9W7A image
Deposition Date 2025-08-06
Release Date 2026-04-01
Last Version Date 2026-04-01
Entry Detail
PDB ID:
9W7A
Keywords:
Title:
Crystal structure of L-galactose dehydrogenase from Luteolibacter sp. strain LG18 in complex with L-glucose and NADP+
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.56 Å
R-Value Free:
0.18
R-Value Work:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-galactose dehydrogenase
Chain IDs:A, B
Chain Length:349
Number of Molecules:2
Biological Source:Luteolibacter sp. LG18
Primary Citation
Characterization of bacterial l-galactose dehydrogenase with l-glucose dehydrogenase activity from Luteolibacter sp. strain LG18.
Biosci. Biotechnol. Biochem. ? ? ? (2026)
PMID: 41854348 DOI: 10.1093/bbb/zbag041

Abstact

The crystal structure of l-galactose dehydrogenase (LGDH) with l-glucose dehydrogenase activity from Luteolibacter sp. strain LG18 (Lu-LGDH) was determined in complex with l-galactose or l-glucose and NADP(+). This structural analysis identified key residues involved in substrate binding, and alanine-substituted mutants demonstrated the roles of these residues, including Tyr56, acting as potential general base within the catalytic tetrad. Unlike plant enzymes that show a preference for NAD(+), Lu-LGDH exhibits a marked preference for NADP(+) as a cofactor. This preference was attributed to the interaction of the phosphate group with Arg28, Thr269, and Asn274. The binding mode of l-glucose was similar to that of l-galactose. The C4 hydroxyl group (the structural difference between these pyranoses) was not used for substrate binding, which explains the dual activity of the enzyme. Furthermore, among the substrate-binding residues that were mutated, Arg308, which is not conserved among LGDHs, was crucial for the enzymatic activity.

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Primary Citation of related structures
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