9T95 image
Deposition Date 2025-11-13
Release Date 2026-04-08
Last Version Date 2026-04-29
Entry Detail
PDB ID:
9T95
Keywords:
Title:
Crystal structure of beta-TrCP bound by diphosphorylated NRF2 degron peptide.
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.27
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-box/WD repeat-containing pr
Gene (Uniprot):BTRC
Mutagens:L188E, L192E
Chain IDs:A
Chain Length:365
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear factor erythroid 2-re
Gene (Uniprot):NFE2L2
Chain IDs:B
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER modified residue
Primary Citation

Abstact

Inhibiting the oncogenic driver NRF2 in non-small cell lung cancer (NSCLC) represents a promising yet challenging clinical opportunity. Small molecules that enhance the NRF2:beta-TrCP interaction ("molecular glues") could hold therapeutic potential by promoting the ubiquitination and proteasomal degradation of NRF2. NRX-252114 is a molecular glue previously reported to promote the interaction between beta-catenin and beta-TrCP. We now find that NRX-252114 can also enhance the association between beta-TrCP and NRF2 phosphodegron peptides. To leverage this novel interaction for the development of NRF2:beta-TrCP molecular glues, we synthesized and evaluated a library of chemical analogues, guided by homology modeling and subsequently by X-ray crystallography. Surprisingly, structural elucidation of the NRF2:beta-TrCP complex revealed occlusion of the presumed molecular glue binding pocket. This mechanistic insight explains the limited affinity enhancement for analogues of NRX-252114, and provides a structural rationale for the lack of NRF2 degradation in cells. Our findings broaden the scope of beta-TrCP-targeted molecular glues, demonstrate that NRF2 is "glueable" at the peptide level, and provide mechanistic guidance for future efforts to target the pharmacologically elusive NRF2 pathway in cancer.

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Disease

Primary Citation of related structures
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