9SZW image
Deposition Date 2025-10-16
Release Date 2026-05-13
Last Version Date 2026-05-20
Entry Detail
PDB ID:
9SZW
Keywords:
Title:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - IsdH:Hbdim complex
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.14 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha
Gene (Uniprot):HBA1, HBA2
Chain IDs:A
Chain Length:140
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta
Gene (Uniprot):HBB
Chain IDs:B
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Iron-regulated surface determ
Gene (Uniprot):isdH
Chain IDs:C
Chain Length:616
Number of Molecules:1
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Refining the mechanism of heme acquisition from free hemoglobin by Staphylococcus aureus IsdH.
Proc.Natl.Acad.Sci.USA 123 ? ? (2026)
PMID: 42113987 DOI: 10.1073/pnas.2601134123

Abstact

Staphylococcus aureus is a human pathogen whose virulence depends on iron acquisition. The bacterium expresses the hemophores IsdB and IsdH that enable heme capture from host hemoglobin (Hb). Unlike IsdB, IsdH can bind both free Hb and Hb:haptoglobin (Hb:Hp) complexes. Here, we present a comprehensive structural analysis of full-length IsdH in complex with free Hb, overcoming the limitations of previous studies based on truncated IsdH constructs. Cryo-EM revealed a previously unobserved oligomeric state and a unique binding pose of the N-terminal Hb-binding domain, likely representing the initial step of Hb engagement. Time-resolved and single-molecule force spectroscopy experiments delineated the sequential steps and mechanical aspects of Hb binding and heme extraction. Together, these findings provide an integrated structural and functional view of the IsdH-Hb interaction in the absence of Hp, as may occur during hemolysis, and offer insights into S. aureus heme scavenging and potential avenues for therapeutic inhibition.

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Primary Citation of related structures
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