9PKQ image
Deposition Date 2025-07-14
Release Date 2026-03-18
Last Version Date 2026-03-25
Entry Detail
PDB ID:
9PKQ
Title:
Structure of the cytoplasmic domain of unliganded human Tom70, open and closed conformations
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor
Gene (Uniprot):TOMM70
Chain IDs:A, B
Chain Length:510
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
An allosteric network governs Tom70 conformational dynamics to coordinate mitochondrial import.
Structure 34 273 ? (2026)
PMID: 41386227 DOI: 10.1016/j.str.2025.11.011

Abstact

Tom70 mediates mitochondrial protein import by coordinating transfer of cytosolic preproteins from Hsp70/Hsp90 to the translocase of the outer membrane (TOM) complex. In humans, the cytosolic domain of Tom70 (HsTom70c) is entirely alpha-helical and comprises modular TPR motifs divided into an N-terminal chaperone-binding and a C-terminal preprotein-binding domain. However, the mechanisms linking these functional regions remain poorly understood. Here, we present the 2.04 A crystal structure of unliganded HsTom70c, revealing two distinct conformations-open and closed-within the asymmetric unit. These states are stabilized by interdomain crystal contacts and supported in solution by hydrogen-deuterium exchange mass spectrometry (HDX-MS) and molecular dynamics (MD) simulations. Principal component and network analyses reveal a continuum of motion linking the NTD and CTD via key residues in helices alpha7, alpha8, and alpha25. Engagement of the CTD by viral protein Orf9b disrupts this network, stabilizing a partially closed intermediate and dampening distal NTD dynamics.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback