9PGZ image
Deposition Date 2025-07-08
Release Date 2025-12-24
Last Version Date 2025-12-31
Entry Detail
PDB ID:
9PGZ
Keywords:
Title:
X-ray crystal structure of SRD42
Biological Source:
Source Organism(s):
Priestia megaterium (Taxon ID: 1404)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 3 2
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tyrosinase,Tyrosine-protein k
Gene (Uniprot):FYN
Chain IDs:A
Chain Length:353
Number of Molecules:1
Biological Source:Priestia megaterium, Homo sapiens
Ligand Molecules
Primary Citation
Enhancing enzymatic bioconjugation efficiency via installation of a substrate recruitment domain.
Biorxiv ? ? ? (2025)
PMID: 41279480 DOI: 10.1101/2025.10.27.684804

Abstact

Enzyme mediated bioconjugation provides a method for easy and rapid formation of protein-protein and protein-small molecule conjugates under mild conditions. Promiscuous enzymes are of particular interest because they can catalyze conjugation reactions on a broad set of substrates. However, this promiscuity carries the risk of undesirable off-target modifications. To mitigate this effect, we used computational design to install a substrate recruitment domain (SRD) onto the promiscuous enzyme, tyrosinase. The redesigned tyrosinase, called D42, preferentially modifies tyrosine residues within the peptide core (core) linked to a 6-amino acid recognition motif/sequence (RS) specific for the SRD. Incorporation of the recognition sequence along with a neighboring tyrosine in peptides or proteins allows for rapid D42-mediated conversion of the tyrosine to an orthoquinone, which can be selectively modified with a variety of nucleophiles. We demonstrate the utility of our design system by rapidly installing cytotoxic molecules on a monoclonal antibody.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback