9NM7 image
Deposition Date 2025-03-04
Release Date 2026-01-14
Last Version Date 2026-01-14
Entry Detail
PDB ID:
9NM7
Keywords:
Title:
[2T7-SiO2] Rhombohedral tensegrity triangle lattice coated in silica
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
4.76 Å
R-Value Free:
0.34
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
H 3
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*AP*GP*CP*AP*GP*
Chain IDs:A
Chain Length:12
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*CP*AP*CP*CP*GP
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*CP*TP*GP*AP*TP*
Chain IDs:C
Chain Length:14
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*GP*GP*AP*CP*AP
Chain IDs:D
Chain Length:9
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
DNA Glass: Encasing Diffraction-Quality, Mesoporous DNA Crystals in Architected Silica.
Angew. Chem. Int. Ed. Engl. 65 e16745 e16745 (2026)
PMID: 41178261 DOI: 10.1002/anie.202516745

Abstact

Self-assembling DNA crystals have emerged over the last two decades as an efficient and effective means of organizing matter at the nanoscale, but functionalization of these lattices has proved challenging as physiological buffer conditions are required to maintain structural integrity. In this manuscript, we demonstrate the silicification of mesoporous DNA crystals using sol-gel chemistry. We identify reaction conditions that produce the minimum coating thickness to confer environmental protection, and we subsequently measure this protective ability to various stressors, including heat, low ionic strength solution, organic solvents, and unprotected freezing. By soaking metal ions and dyes into the lattice after silica coating, we demonstrate that the crystals maintain their pores and that the major groove of the DNA can still be used as a sequence-specific template for chemical reactions. We image a library of different crystal motifs by electron microscopy, and we perform X-ray diffraction on these crystals, both with and without cryoprotection, to determine the structure of the DNA frame, underscoring the conserved molecular order after coating. We anticipate these mesoporous silica composites will find use in applications involving extreme, nonphysiological conditions and in experiments which utilize the DNA glass described here as a template for chemical reactions on the internal surface of architected materials.

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