9KPM image
Deposition Date 2024-11-23
Release Date 2025-03-12
Last Version Date 2025-03-12
Entry Detail
PDB ID:
9KPM
Keywords:
Title:
Crystal structure of KRAS-G12C in complex with compound 16 (JAB-16)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.41 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 2B of GTPase KRas
Gene (Uniprot):KRAS
Mutagens:G12C
Chain IDs:A
Chain Length:184
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, Structure Optimization, and Preclinical Characterization of JAB-21822, a Covalent Inhibitor of KRAS G12C.
J. Med. Chem. 68 2422 2436 (2025)
PMID: 39875337 DOI: 10.1021/acs.jmedchem.4c02939

Abstact

KRAS is the most frequently mutated driver oncogene in human cancer, and KRASG12C mutation is commonly found in non-small-cell lung cancer (NSCLC), colorectal cancer (CRC), and pancreatic ductal adenocarcinoma (PDAC). Inhibitors that covalently modify the mutated codon 12 cysteine have completed proof-of-concept studies in the clinic. Here, we describe structure-based design and cocrystal-aided drug optimization of a series of compounds with the 1,8-naphthyridine-3-carbonitrile scaffold. Biopharmaceutical optimization of the resulting leads to improve the solubility of the compounds and block the possible metabolic hotspots led to the identification of JAB-21822, a covalent KRASG12C inhibitor with high potency and excellent cross-species pharmacokinetic properties. JAB-21822 has finished the pivotal Phase II clinical trials in NSCLC, and a new drug application was submitted to the National Medical Products Administration in 2024.

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Primary Citation of related structures
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