9I89 image
Deposition Date 2025-02-04
Release Date 2026-04-15
Last Version Date 2026-04-15
Entry Detail
PDB ID:
9I89
Keywords:
RIBOSOME
Title:
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Biological Source:
Source Organism(s):
Staphylococcus aureus (Taxon ID: 1280)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.01 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9I89 validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:A (auth: 1)
Chain Length:62
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:B (auth: 2)
Chain Length:69
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:C (auth: 3)
Chain Length:59
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:YA (auth: 4)
Chain Length:84
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:D (auth: 5)
Chain Length:57
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:E (auth: 6)
Chain Length:49
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:F (auth: 7)
Chain Length:45
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:G (auth: 8)
Chain Length:66
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:H (auth: 9)
Chain Length:37
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polyribonucleotide
Molecule:23S ribosomal RNA
Chain IDs:VA (auth: A)
Chain Length:2923
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:I (auth: B)
Chain Length:115
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:J (auth: C)
Chain Length:105
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polyribonucleotide
Molecule:fMet-P-tRNA
Chain IDs:K (auth: D)
Chain Length:77
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:L (auth: G)
Chain Length:277
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:M (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:N (auth: I)
Chain Length:207
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:O (auth: J)
Chain Length:130
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:P (auth: K)
Chain Length:178
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:Q (auth: M)
Chain Length:145
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:R (auth: N)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:S (auth: O)
Chain Length:146
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:T (auth: P)
Chain Length:144
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:U (auth: Q)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:V (auth: R)
Chain Length:87
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:W (auth: S)
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:X (auth: T)
Chain Length:92
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:Y (auth: U)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:Z (auth: V)
Chain Length:117
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:AA (auth: W)
Chain Length:91
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:BA (auth: Y)
Chain Length:217
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:CA (auth: Z)
Chain Length:94
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:WA (auth: a)
Chain Length:2923
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:DA (auth: c)
Chain Length:105
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:EA (auth: d)
Chain Length:77
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:FA (auth: e)
Chain Length:200
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:GA (auth: f)
Chain Length:166
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:HA (auth: g)
Chain Length:277
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:XA (auth: h)
Chain Length:220
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:IA (auth: i)
Chain Length:207
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:JA (auth: j)
Chain Length:130
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:KA (auth: k)
Chain Length:178
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:LA (auth: l)
Chain Length:129
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:MA (auth: m)
Chain Length:145
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:NA (auth: n)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:OA (auth: o)
Chain Length:146
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:PA (auth: p)
Chain Length:144
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:QA (auth: q)
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:RA (auth: r)
Chain Length:87
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:SA (auth: s)
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:TA (auth: t)
Chain Length:92
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:UA (auth: u)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MA6 VA A modified residue
Ligand Molecules
A1I09
FME
K
MG
ZN
Primary Citation
Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
To be published ? ? ? (?)
Primary Citation of related structures
9I89
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