9E7Q image
Deposition Date 2024-11-04
Release Date 2025-11-12
Last Version Date 2026-05-06
Entry Detail
PDB ID:
9E7Q
Keywords:
Title:
Structure of a coiled-coil peptide from C. elegans EDC4
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.42 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FHA domain-containing protein
Gene (Uniprot):edc-4
Chain IDs:A, B
Chain Length:33
Number of Molecules:2
Biological Source:Caenorhabditis elegans
Ligand Molecules
Primary Citation
Conserved and divergent features of human mRNA decapping revealed by biochemical reconstitution.
Nat Commun 17 ? ? (2026)
PMID: 42014425 DOI: 10.1038/s41467-026-72177-2

Abstact

Decapping is a critical step in mRNA decay, but the mechanisms regulating human decapping enzyme DCP2 remain poorly understood. Here, we reconstitute the human decapping network using full-length recombinant proteins and compare it to the yeast system. Unlike in yeast, we find that the C-terminal region of human DCP2 is not autoinhibitory. RNA-binding residues of yeast Dcp2 are not conserved in the human homolog, and we find instead that a charged C-terminal region mediates substrate recognition. Human DCP1 does not stably interact with or directly stimulate DCP2, but mediates activation by the enhancer PNRC2. We also demonstrate that decapping enhancer EDC4 forms tetramers through an extended coiled-coil region, and that both DCP1 and EDC4 homomeric species can further assemble into higher-order oligomers. Furthermore, structural predictions incorporating these findings suggest a model for DCP2 recruitment by EDC4 tetramers. These findings reveal key mechanistic differences between human and yeast decapping regulation and provide insight into the molecular architecture underlying mRNA decay.

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Chemical

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Primary Citation of related structures
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