9E6X image
Deposition Date 2024-10-31
Release Date 2025-05-21
Last Version Date 2025-12-03
Entry Detail
PDB ID:
9E6X
Title:
Crystal structure of ferritin
Biological Source:
Source Organism(s):
Equus caballus (Taxon ID: 9796)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
F 4 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferritin light chain
Gene (Uniprot):FTL
Chain IDs:A
Chain Length:170
Number of Molecules:1
Biological Source:Equus caballus
Primary Citation
Processing of Freestanding Single Supercrystal Assembled by Atomically Precise Protein-Decorated Nanoparticles.
Nano Lett. 25 7178 7185 (2025)
PMID: 40257419 DOI: 10.1021/acs.nanolett.5c01619

Abstact

Protein-decorated ferrihydrite nanoparticles (NPs) can self-assemble into periodically ordered structures with response to an external stimulus. X-ray crystallography determines the self-assembly of ferritin-folded nanocages into a face-centered cubic (fcc) structure at atomic resolution, while Cryo-EM imaging with 3D Ab-initio reconstruction defines the size, shape, and distribution of inside NPs at a subnanoscale. Processing of freestanding crystals reveals a large 3D spacing variation of 314% with preservation of translational symmetry. At an internanocage separation of 3.3 nm, crystals still maintain both translational and orientational ordering. In situ SAXS measurements reveal that the diffusion-driven NP assembly starts with a close separation to 3.3 nm. Compression of the single crystal leads to a 3D spacing reduction of ∼40%, giving a rigid modulus of 0.81 GPa. Enhanced stress causes water release from the ordered lattice and triggers biomolecule unfolding. This study provides insights for designing molecules to enhance directional interactions in the NP assembly and engineering control of active materials for adaptive applications.

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