9DGV image
Deposition Date 2024-09-03
Release Date 2025-09-10
Last Version Date 2026-04-08
Entry Detail
PDB ID:
9DGV
Keywords:
Title:
structure of dynactin, dynein tail with TRAK2 from dynein-dynactin-TRAK2 on microtubules
Biological Source:
Source Organism(s):
Mus musculus (Taxon ID: 10090)
Sus scrofa (Taxon ID: 9823)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
8.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-centractin
Chain IDs:A, B, C, D, E, F, G, I
Chain Length:376
Number of Molecules:8
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:H
Chain Length:612
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 10
Gene (Uniprot):ACTR10
Chain IDs:J
Chain Length:417
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-actin-capping protein subun
Gene (Uniprot):CAPZA1
Chain IDs:K
Chain Length:286
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-actin-capping protein subun
Gene (Uniprot):CAPZB
Chain IDs:L
Chain Length:272
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Gene (Uniprot):DCTN2
Chain IDs:M, N, P, Q
Chain Length:405
Number of Molecules:4
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 3
Gene (Uniprot):DCTN3
Chain IDs:O, R
Chain Length:612
Number of Molecules:2
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 6
Gene (Uniprot):DCTN6
Chain IDs:S (auth: U)
Chain Length:190
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 5
Gene (Uniprot):DCTN5
Chain IDs:T (auth: V)
Chain Length:182
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 1
Gene (Uniprot):DCTN1
Chain IDs:U (auth: W), W (auth: Z)
Chain Length:1281
Number of Molecules:2
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 4
Gene (Uniprot):DCTN4
Chain IDs:V (auth: Y)
Chain Length:467
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Trafficking protein, kinesin
Gene (Uniprot):Trak2
Chain IDs:X (auth: a), Y (auth: b)
Chain Length:376
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 heavy ch
Chain IDs:Z (auth: e), AA (auth: f), DA (auth: m), EA (auth: n)
Chain Length:405
Number of Molecules:4
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 intermed
Gene (Uniprot):DYNC1I2
Chain IDs:BA (auth: g), CA (auth: h), FA (auth: o), GA (auth: p)
Chain Length:612
Number of Molecules:4
Biological Source:Sus scrofa
Primary Citation
Roles of microtubules and LIS1 in dynein transport machinery assembly.
Nature ? ? ? (2026)
PMID: 41708859 DOI: 10.1038/s41586-026-10153-y

Abstact

Cytoplasmic dynein-1, a microtubule (MT)-based motor protein, requires dynactin and a coiled-coil adaptor to form the processive dynein-dynactin-adaptor (DDA) complex(1,2). The roles of MTs and dynein regulator lissencephaly-1 (LIS1) in DDA assembly have remained elusive. Here we use cryo-electron microscopy to determine the structural basis of MT- and LIS1-mediated DDA assembly. We show that an adaptor-independent dynein-dynactin complex spontaneously forms on MTs with an intrinsic 2:1 stoichiometry in a highly efficient manner, driven by parallel alignment of dynein tails upon MT binding. Adaptors can wedge into and exchange within the assembled MT-bound dynein-dynactin complex; these processes are enabled by relative rotations between dynein and dynactin and facilitated by the dynein light-intermediate chains that assist the adaptor 'search' mechanism. Although LIS1 is dispensable for efficient DD(A)-MT assembly, its presence expands the conformational landscape of DD(A) assemblies on MTs. Cryo-electron microscopy reveals that LIS1 bridges dynactin p150(glued) and dynein in both the closed Phi-like and open prepowerstroke states, stabilizing low-MT-affinity intermediates that tether dynein molecules in proximity to MTs and prime them for subsequent DD(A) assembly through alternative pathways. These findings demonstrate the dynamic adaptability of the dynein transport machinery and the coordinated roles of MTs and LIS1 in DDA assembly.

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