7X1K image
Deposition Date 2022-02-24
Release Date 2022-08-10
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7X1K
Keywords:
Title:
Crystal structure of the flagellar expression regulator DegU from Listeria monocytogenes
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chemotaxis protein CheY
Gene (Uniprot):degU
Chain IDs:A, B
Chain Length:76
Number of Molecules:2
Biological Source:Listeria monocytogenes
Primary Citation
Structural and biochemical analyses of the flagellar expression regulator DegU from Listeria monocytogenes.
Sci Rep 12 10856 10856 (2022)
PMID: 35798759 DOI: 10.1038/s41598-022-14459-5

Abstact

Listeria monocytogenes is a pathogenic bacterium that produces flagella, the locomotory organelles, in a temperature-dependent manner. At 37 °C inside humans, L. monocytogenes employs MogR to repress the expression of flagellar proteins, thereby preventing the production of flagella. However, in the low-temperature environment outside of the host, the antirepressor GmaR inactivates MogR, allowing flagellar formation. Additionally, DegU is necessary for flagellar expression at low temperatures. DegU transcriptionally activates the expression of GmaR and flagellar proteins by binding the operator DNA in the fliN-gmaR promoter as a response regulator of a two-component regulatory system. To determine the DegU-mediated regulation mechanism, we performed structural and biochemical analyses on the recognition of operator DNA by DegU. The DegU-DNA interaction is primarily mediated by a C-terminal DNA-binding domain (DBD) and can be fortified by an N-terminal receiver domain (RD). The DegU DBD adopts a tetrahelical helix-turn-helix structure and assembles into a dimer. The DegU DBD dimer recognizes the operator DNA using a positive patch. Unexpectedly, unlike typical response regulators, DegU interacts with operator DNA in both unphosphorylated and phosphorylated states with similar binding affinities. Therefore, we conclude that DegU is a noncanonical response regulator that is constitutively active irrespective of phosphorylation.

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Primary Citation of related structures
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