6VN1 image
Deposition Date 2020-01-29
Release Date 2020-07-15
Last Version Date 2025-05-28
Entry Detail
PDB ID:
6VN1
Title:
A 2.8 Angstrom Cryo-EM Structure of a Glycoprotein B-Neutralizing Antibody Complex Reveals a Critical Domain for Herpesvirus Fusion Initiation
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein B
Chain IDs:C (auth: A), F (auth: B), I (auth: C)
Chain Length:931
Number of Molecules:3
Biological Source:Human alphaherpesvirus 3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Human monoclonal antibody 93k
Chain IDs:B (auth: H), E (auth: I), H (auth: J)
Chain Length:128
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Human monoclonal antibody 93k
Chain IDs:A (auth: L), D (auth: M), G (auth: N)
Chain Length:106
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A glycoprotein B-neutralizing antibody structure at 2.8 angstrom uncovers a critical domain for herpesvirus fusion initiation.
Nat Commun 11 4141 4141 (2020)
PMID: 32811830 DOI: 10.1038/s41467-020-17911-0

Abstact

Members of the Herpesviridae, including the medically important alphaherpesvirus varicella-zoster virus (VZV), induce fusion of the virion envelope with cell membranes during entry, and between cells to form polykaryocytes in infected tissues. The conserved glycoproteins, gB, gH and gL, are the core functional proteins of the herpesvirus fusion complex. gB serves as the primary fusogen via its fusion loops, but functions for the remaining gB domains remain unexplained. As a pathway for biological discovery of domain function, our approach used structure-based analysis of the viral fusogen together with a neutralizing antibody. We report here a 2.8 Å cryogenic-electron microscopy structure of native gB recovered from VZV-infected cells, in complex with a human monoclonal antibody, 93k. This high-resolution structure guided targeted mutagenesis at the gB-93k interface, providing compelling evidence that a domain spatially distant from the gB fusion loops is critical for herpesvirus fusion, revealing a potential new target for antiviral therapies.

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Chemical

Disease

Primary Citation of related structures
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