6TLJ image
Deposition Date 2019-12-02
Release Date 2020-02-19
Last Version Date 2025-07-02
Entry Detail
PDB ID:
6TLJ
Keywords:
Title:
Cryo-EM structure of the Anaphase-promoting complex/Cyclosome, in complex with the Mitotic checkpoint complex (APC/C-MCC) at 3.8 angstrom resolution
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC1
Chain IDs:A
Chain Length:1944
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC11
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 2
Gene (Uniprot):CDC23
Chain IDs:C, P
Chain Length:597
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC15
Chain IDs:D
Chain Length:121
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC16
Chain IDs:E
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 2
Gene (Uniprot):CDC27
Chain IDs:F, H
Chain Length:824
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):CDC26
Chain IDs:G, T (auth: W)
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC4
Chain IDs:I
Chain Length:808
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 1
Gene (Uniprot):CDC16
Chain IDs:J, K
Chain Length:620
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC10
Chain IDs:L
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC13
Chain IDs:M
Chain Length:74
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC2
Chain IDs:N
Chain Length:822
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC5
Chain IDs:O
Chain Length:755
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 2
Gene (Uniprot):CDC20
Chain IDs:Q
Chain Length:374
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell division cycle protein 2
Gene (Uniprot):CDC20
Chain IDs:R
Chain Length:499
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitotic checkpoint serine/thr
Gene (Uniprot):BUB1B
Chain IDs:S
Chain Length:1050
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anaphase-promoting complex su
Gene (Uniprot):ANAPC7
Chain IDs:U (auth: X), V (auth: Y)
Chain Length:599
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitotic spindle assembly chec
Gene (Uniprot):MAD2L1
Chain IDs:W (auth: Z)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A unique binding mode of Nek2A to the APC/C allows its ubiquitination during prometaphase.
Embo Rep. 21 e49831 e49831 (2020)
PMID: 32307883 DOI: 10.15252/embr.201949831

Abstact

The anaphase-promoting complex (APC/C) is the key E3 ubiquitin ligase which directs mitotic progression and exit by catalysing the sequential ubiquitination of specific substrates. The activity of the APC/C in mitosis is restrained by the spindle assembly checkpoint (SAC), which coordinates chromosome segregation with the assembly of the mitotic spindle. The SAC effector is the mitotic checkpoint complex (MCC), which binds and inhibits the APC/C. It is incompletely understood how the APC/C switches substrate specificity in a cell cycle-specific manner. For instance, it is unclear how in prometaphase, when APC/C activity towards cyclin B and securin is repressed by the MCC, the kinase Nek2A is ubiquitinated. Here, we combine biochemical and structural analysis with functional studies in cells to show that Nek2A is a conformational-specific binder of the APC/C-MCC complex (APC/CMCC) and that, in contrast to cyclin A, Nek2A can be ubiquitinated efficiently by the APC/C in conjunction with both the E2 enzymes UbcH10 and UbcH5. We propose that these special features of Nek2A allow its prometaphase-specific ubiquitination.

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