6SP2 image
Deposition Date 2019-08-30
Release Date 2020-01-01
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6SP2
Title:
CryoEM structure of SERINC from Drosophila melanogaster
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.33 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Membrane protein TMS1d
Gene (Uniprot):Serinc
Chain IDs:A, B, C, D, E, F
Chain Length:513
Number of Molecules:6
Biological Source:Drosophila melanogaster
Primary Citation
A bipartite structural organization defines the SERINC family of HIV-1 restriction factors.
Nat. Struct. Mol. Biol. 27 78 83 (2020)
PMID: 31907454 DOI: 10.1038/s41594-019-0357-0

Abstact

The human integral membrane protein SERINC5 potently restricts HIV-1 infectivity and sensitizes the virus to antibody-mediated neutralization. Here, using cryo-EM, we determine the structures of human SERINC5 and its orthologue from Drosophila melanogaster at subnanometer and near-atomic resolution, respectively. The structures reveal a novel fold comprised of ten transmembrane helices organized into two subdomains and bisected by a long diagonal helix. A lipid binding groove and clusters of conserved residues highlight potential functional sites. A structure-based mutagenesis scan identified surface-exposed regions and the interface between the subdomains of SERINC5 as critical for HIV-1-restriction activity. The same regions are also important for viral sensitization to neutralizing antibodies, directly linking the antiviral activity of SERINC5 with remodeling of the HIV-1 envelope glycoprotein.

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Primary Citation of related structures
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