6SJM image
Deposition Date 2019-08-13
Release Date 2019-09-18
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6SJM
Title:
Crystal structure of the Retinoic Acid Receptor alpha in complex with compound 24 (JP175)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Retinoic acid receptor RXR-al
Gene (Uniprot):RXRA
Chain IDs:A
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear receptor coactivator
Gene (Uniprot):NCOA2
Chain IDs:B
Chain Length:14
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A Novel Biphenyl-based Chemotype of Retinoid X Receptor Ligands Enables Subtype and Heterodimer Preferences.
Acs Med.Chem.Lett. 10 1346 1352 (2019)
PMID: 31531208 DOI: 10.1021/acsmedchemlett.9b00306

Abstact

The nuclear retinoid X receptors (RXRs) are key ligand sensing transcription factors that serve as universal nuclear receptor heterodimer partners and are thus involved in numerous physiological processes. Therapeutic targeting of RXRs holds high potential but available RXR activators suffer from limited safety. Selectivity for RXR subtypes or for certain RXR heterodimers are promising strategies for safer RXR modulation. Here, we report systematic structure-activity relationship studies on biphenyl carboxylates as new RXR ligand chemotype. We discovered specific structural modifications that enhance potency on RXRs, govern subtype preference, and vary modulation of different RXR heterodimers. Fusion of these structural motifs enabled specific tuning of subtype preferential profiles with markedly improved potency. Our results provide further evidence that RXR subtype selective ligands can be designed and present a novel chemotype of RXR modulators that can be tuned for subtype and heterodimer preferences.

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Primary Citation of related structures
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