6Q6Z image
Deposition Date 2018-12-12
Release Date 2019-10-02
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6Q6Z
Keywords:
Title:
Structure of the plant immune signaling node EDS1 (enhanced disease susceptibility 1) in complex with nanobody ENB21
Biological Source:
Source Organism(s):
Arabidopsis thaliana (Taxon ID: 3702)
Lama glama (Taxon ID: 9844)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.48 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 3 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein EDS1L
Gene (Uniprot):EDS1
Chain IDs:A
Chain Length:631
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:EDS1-SPECIFIC NANOBODY
Chain IDs:B
Chain Length:142
Number of Molecules:1
Biological Source:Lama glama
Ligand Molecules
Primary Citation
Arabidopsis immunity regulator EDS1 in a PAD4/SAG101-unbound form is a monomer with an inherently inactive conformation.
J. Struct. Biol. 208 107390 107390 (2019)
PMID: 31550533 DOI: 10.1016/j.jsb.2019.09.007

Abstact

In plant innate immunity, enhanced disease susceptibility 1 (EDS1) integrates all pathogen-induced signals transmitted by TIR-type NLR receptors. Driven by an N-terminal α/β-hydrolase-fold domain with a protruding interaction helix, EDS1 assembles with two homologs, phytoalexin-deficient 4 (PAD4) and senescence-associated gene 101 (SAG101). The resulting heterodimers are critical for EDS1 function and structurally well characterized. Here, we resolve solution and crystal structures of unbound Arabidopsis thaliana EDS1 (AtEDS1) using nanobodies for crystallization. These structures, together with gel filtration and immunoprecipitation data, show that PAD4/SAG101-unbound AtEDS1 is stable as a monomer and does not form the homodimers recorded in public databases. Its PAD4/SAG101 anchoring helix is disordered unless engaged in protein/protein interactions. As in the complex with SAG101, monomeric AtEDS1 has a substrate-inaccessible esterase triad with a blocked oxyanion hole and without space for a covalent acyl intermediate. These new structures suggest that the AtEDS1 monomer represents an inactive or pre-activated ground state.

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Protein

Chemical

Disease

Primary Citation of related structures
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