6IYB image
Deposition Date 2018-12-14
Release Date 2019-03-13
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6IYB
Title:
Structure of human ORP1 ANK - Rab7 complex
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.09 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rab-7a
Gene (Uniprot):RAB7A
Mutagens:Q67L, Leu73 deletion
Chain IDs:A, C
Chain Length:199
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxysterol-binding protein-rel
Gene (Uniprot):OSBPL1A
Chain IDs:B, D
Chain Length:154
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural basis of human ORP1-Rab7 interaction for the late-endosome and lysosome targeting.
PLoS ONE 14 e0211724 e0211724 (2019)
PMID: 30721249 DOI: 10.1371/journal.pone.0211724

Abstact

Oxysterol-binding protein (OSBP) and OSBP-related proteins (ORPs) constitute a family of lipid transfer proteins conserved in eukaryotes. ORP1 transports cholesterol at the interface between the late endosomes/lysosomes (LELs) and the endoplasmic reticulum (ER). ORP1 is targeted to the endosomal membranes by forming a tripartite complex with the LE GTPase Rab7 and its effector RILP (Rab7-interacting lysosomal protein). Here, we determined the crystal structure of human ORP1 ANK domain in complex with the GTP-bound form of Rab7. ORP1 ANK binds to the helix α3 of Rab7 located away from the switching regions, which makes the interaction independent of the nucleotide-binding state of Rab7. Thus, the effector-interacting switch regions of Rab7 are accessible for RILP binding, allowing formation of the ORP1-Rab7-RILP complex. ORP1 ANK binds to Rab7 and the Rab7-RILP complex with similar micro-molar affinities, which is consistent with the independence binding of ORP1 and RILP to Rab7. The structural model of the ORP1-Rab7-RILP complex correlates with the recruitment of ORP1 at the LEL-ER interface and the role in lipid transport and regulation.

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