6E5I image
Deposition Date 2018-07-20
Release Date 2018-11-21
Last Version Date 2025-04-02
Entry Detail
PDB ID:
6E5I
Keywords:
Title:
Heterogeneous-Backbone Mimics of a Designed Disulfide-Rich Protein: Orn turn
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Designed peptide NC_HEE_D1: O
Chain IDs:A
Chain Length:27
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Heterogeneous-Backbone Foldamer Mimics of a Computationally Designed, Disulfide-Rich Miniprotein.
Chembiochem 20 103 110 (2019)
PMID: 30326175 DOI: 10.1002/cbic.201800558

Abstact

Disulfide-rich peptides have found widespread use in the development of bioactive agents; however, low proteolytic stability and the difficulty of exerting synthetic control over chain topology present barriers to their application in some systems. Herein, we report a method that enables the creation of artificial backbone ("foldamer") mimics of compact, disulfide-rich tertiary folds. Systematic replacement of a subset of natural α-residues with various artificial building blocks in the context of a computationally designed prototype sequence leads to "heterogeneous-backbone" variants that undergo clean oxidative folding, adopt tertiary structures indistinguishable from that of the prototype, and enjoy proteolytic protection beyond that inherent to the topologically constrained scaffold. Collectively, these results demonstrate systematic backbone substitution to be a viable method to engineer the properties of disulfide-rich sequences and expands the repertoire of protein mimicry by foldamers to an exciting new structural class.

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Disease

Primary Citation of related structures
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