6DFE image
Deposition Date 2018-05-14
Release Date 2018-09-05
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6DFE
Keywords:
Title:
The structure of a ternary complex of E. coli WaaC
Biological Source:
Source Organism(s):
Escherichia coli (Taxon ID: 562)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.31 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADP-heptose--LPS heptosyltran
Gene (Uniprot):rfaC
Chain IDs:A, B
Chain Length:326
Number of Molecules:2
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Insights into Heptosyltransferase I Catalysis and Inhibition through the Structure of Its Ternary Complex.
Structure 26 1399 1407.e5 (2018)
PMID: 30122450 DOI: 10.1016/j.str.2018.07.001

Abstact

Heptosyltransferase I (WaaC) is a highly conserved glycosyltransferase found in Gram-negative bacteria that transfers a heptose residue onto the endotoxin inner core structure (ReLPS) of the outer membrane. Knockouts of WaaC have decreased virulence and increased susceptibility to antibiotics, making WaaC a potential drug target. While previous studies have elucidated the structure of the holoenzyme and a donor analog complex, no information on the binding mode of the acceptor has been available so far. By soaking of a chemically modified functional acceptor, along with a stable donor analog, the crystal structure of a pseudo-ternary complex of WaaC was obtained at 2.3-Å resolution. The acceptor is bound in an unusual horseshoe conformation stabilized by interaction of the anionic carboxylate and phosphate groups at its center and tips with highly conserved Lys and Arg residues. This binding is accompanied by both inter- and intra-domain movements within the protein.

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Protein

Chemical

Disease

Primary Citation of related structures
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