5TWO image
Deposition Date 2016-11-14
Release Date 2017-02-08
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5TWO
Keywords:
Title:
Peroxisome proliferator-activated receptor gamma ligand binding domain in complex with a novel selectively PPAR gamma-modulating ligand VSP-51
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
unidentified (Taxon ID: 32644)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peroxisome proliferator-activ
Gene (Uniprot):PPARG
Chain IDs:A
Chain Length:272
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PRO-SER-LEU-LEU-LYS-LYS-LEU-L
Chain IDs:B
Chain Length:15
Number of Molecules:1
Biological Source:unidentified
Ligand Molecules
Primary Citation
Identification of a novel selective PPAR gamma ligand with a unique binding mode and improved therapeutic profile in vitro.
Sci Rep 7 41487 41487 (2017)
PMID: 28128331 DOI: 10.1038/srep41487

Abstact

Thiazolidinediones (TZD) function as potent anti-diabetic drugs through their direct action on the nuclear receptor peroxisome proliferator-activated receptor γ (PPARγ), but their therapeutic benefits are compromised by severe side effects. To address this concern, here we developed a potent "hit" compound, VSP-51, which is a novel selective PPARγ-modulating ligand with improved therapeutic profiles in vitro compared to the multi-billion dollar TZD drug rosiglitazone (Rosi). Unlike Rosi, VSP-51 is a partial agonist of PPARγ with improved insulin sensitivity due to its ability to bind PPARγ with high affinity without stimulating adipocyte differentiation and the expression of adipogenesis-related genes. We have determined the crystal structure of the PPARγ ligand-binding domain (LBD) in complex with VSP-51, which revealed a unique mode of binding for VSP-51 and provides the molecular basis for the discrimination between VSP-51 from TZDs and other ligands such as telmisartan, SR1663 and SR1664. Taken together, our findings demonstrate that: a) VSP-51 can serve as a promising candidate for anti-diabetic drug discovery; and b) provide a rational basis for the development of future pharmacological agents targeting PPARγ with advantages over current TZD drugs.

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Primary Citation of related structures
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