3SM8 image
Deposition Date 2011-06-27
Release Date 2011-07-20
Last Version Date 2024-04-03
Entry Detail
PDB ID:
3SM8
Keywords:
Title:
Crystal Structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase in Complex with an (N5) Flavin Adduct
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.07 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FAD-dependent catabolic D-arg
Gene (Uniprot):dauA
Chain IDs:A
Chain Length:381
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa
Primary Citation
Atomic-resolution structure of an N5 flavin adduct in D-arginine dehydrogenase.
Biochemistry 50 6292 6294 (2011)
PMID: 21707047 DOI: 10.1021/bi200831a

Abstact

D-Arginine dehydrogenase (DADH) catalyzes the flavin-dependent oxidative deamination of D-arginine and other D-amino acids to the corresponding imino acids. The 1.07 Å atomic-resolution structure of DADH crystallized with D-leucine unexpectedly revealed a covalent N(5) flavin adduct, instead of the expected iminoleucine product in the active site. This acyl adduct has been successfully reproduced by photoreduction of DADH in the presence of 4-methyl-2-oxopentanoic acid (ketoleucine). The iminoleucine may be released readily because of weak interactions in the binding site, in contrast to iminoarginine, converted to ketoleucine, which reacts with activated FAD to form the covalently linked acyl adduct.

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Primary Citation of related structures
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