3PMK image
Deposition Date 2010-11-17
Release Date 2011-10-05
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3PMK
Keywords:
Title:
Crystal structure of the Vesicular Stomatitis Virus RNA free nucleoprotein/phosphoprotein complex
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.03 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleocapsid protein
Gene (Uniprot):N
Chain IDs:A, B, C, D, E
Chain Length:404
Number of Molecules:5
Biological Source:Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphoprotein
Gene (Uniprot):P
Chain IDs:F (auth: N), G (auth: O), H (auth: P), I (auth: Q), J (auth: R)
Chain Length:68
Number of Molecules:5
Biological Source:Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP
Primary Citation
Structure of the Vesicular Stomatitis Virus N0-P Complex
PLoS Pathog. 7 e1002248 e1002248 (2011)
PMID: 21960769 DOI: 10.1371/journal.ppat.1002248

Abstact

Replication of non-segmented negative-strand RNA viruses requires the continuous supply of the nucleoprotein (N) in the form of a complex with the phosphoprotein (P). Here, we present the structural characterization of a soluble, heterodimeric complex between a variant of vesicular stomatitis virus N lacking its 21 N-terminal residues (N(Δ21)) and a peptide of 60 amino acids (P(60)) encompassing the molecular recognition element (MoRE) of P that binds RNA-free N (N(0)). The complex crystallized in a decameric circular form, which was solved at 3.0 Å resolution, reveals how the MoRE folds upon binding to N and competes with RNA binding and N polymerization. Small-angle X-ray scattering experiment and NMR spectroscopy on the soluble complex confirms the binding of the MoRE and indicates that its flanking regions remain flexible in the complex. The structure of this complex also suggests a mechanism for the initiation of viral RNA synthesis.

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Primary Citation of related structures
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