3IPN image
Deposition Date 2009-08-18
Release Date 2010-02-02
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3IPN
Title:
Crystal Structure of fluorine and methyl modified collagen: (mepFlpgly)7
Method Details:
Experimental Method:
Resolution:
1.21 Å
R-Value Free:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-natural Collagen
Chain IDs:A, B, C, D, E, F
Chain Length:21
Number of Molecules:6
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FP9 A PRO (4R)-4-FLUORO-L-PROLINE
MP8 A PRO (4R)-4-METHYL-L-PROLINE
Ligand Molecules
Primary Citation
Stereoelectronic and steric effects in side chains preorganize a protein main chain.
Proc. Natl. Acad. Sci. U.S.A. 107 559 564 (2010)
PMID: 20080719 DOI: 10.1073/pnas.0909592107

Abstact

Preorganization is shown to endow a protein with extraordinary conformational stability. This preorganization is achieved by installing side-chain substituents that impose stereoelectronic and steric effects that restrict main-chain torsion angles. Replacing proline residues in (ProProGly)(7) collagen strands with 4-fluoroproline and 4-methylproline leads to the most stable known triple helices, having T (m) values that are increased by > 50 degrees C. Differential scanning calorimetry data indicate an entropic basis to the hyperstability, as expected from an origin in preorganization. Structural data at a resolution of 1.21 A reveal a prototypical triple helix with insignificant deviations to its main chain, even though 2/3 of the residues are nonnatural. Thus, preorganization of a main chain by subtle changes to side chains can confer extraordinary conformational stability upon a protein without perturbing its structure.

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Disease

Primary Citation of related structures
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