3AGG image
Deposition Date 2010-03-31
Release Date 2011-03-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3AGG
Keywords:
Title:
X-ray analysis of lysozyme in the absence of Arg
Biological Source:
Source Organism(s):
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A (auth: G)
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine
Protein Eng. Des. Sel. 24 269 274 (2011)
PMID: 21084280 DOI: 10.1093/protein/gzq101

Abstact

While biotechnological applications of arginine (Arg) as a solution additive that prevents protein aggregation are increasing, the molecular mechanism of its effects remains unclear. In this study, we investigated the Arg-lysozyme complex by high-resolution crystallographic analysis. Three Arg molecules were observed to be in close proximity to aromatic amino acid residues of the protein surface, and their occupancies gradually increased with increasing Arg concentration. These interactions were mediated by electrostatic, hydrophobic and cation-π interactions with the surface residues. The binding of Arg decreased the accessible surface area of aromatic residues by 40%, but increased that of charged residues by 10%. These changes might prevent intermolecular hydrophobic interactions by shielding hydrophobic regions of the lysozyme surface, resulting in an increase in protein solubility.

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Primary Citation of related structures
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