3A58 image
Deposition Date 2009-08-03
Release Date 2010-01-12
Last Version Date 2024-10-23
Entry Detail
PDB ID:
3A58
Title:
Crystal structure of Sec3p - Rho1p complex from Saccharomyces cerevisiae
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Exocyst complex component SEC
Gene (Uniprot):SEC3
Chain IDs:A, C, E
Chain Length:320
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GTP-binding protein RHO1
Gene (Uniprot):RHO1
Mutagens:F30N
Chain IDs:B, D, F
Chain Length:188
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structural basis for the Rho- and phosphoinositide-dependent localization of the exocyst subunit Sec3
Nat. Struct. Mol. Biol. 17 180 186 (2010)
PMID: 20062059 DOI: 10.1038/nsmb.1722

Abstact

The exocyst complex is a hetero-octameric protein complex that functions during cell polarization by tethering the secretory vesicle to the target membrane. The yeast exocyst subunit Sec3 binds to phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P(2)) and the small GTPases Rho1 and Cdc42 via its N-terminal domain (Sec3-N), and these interactions target Sec3 to the plasma membrane. Here we report the crystal structure of the Sec3-N in complex with Rho1 at 2.6-A resolution. Sec3-N adopts a pleckstrin homology (PH) fold, despite having no detectable sequence homology with other PH domains of known structure. Clusters of conserved basic residues constitute a positively charged cleft, which was identified as a binding site for PtdIns(4,5)P(2). Residues Phe77, Ile115 and Leu131 of Sec3 bind to an extended hydrophobic surface formed around switch regions I and II of Rho1. To our knowledge, these are the first structural insights into how an exocyst subunit might interact with both protein and phospholipid factors on the target membrane.

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