2YBB image
Deposition Date 2011-03-02
Release Date 2011-10-19
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2YBB
Keywords:
Title:
Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
19.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo1
Chain IDs:A (auth: 1)
Chain Length:438
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo2
Chain IDs:B (auth: 2)
Chain Length:181
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo3
Chain IDs:C (auth: 3)
Chain Length:783
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo4
Chain IDs:D (auth: 4)
Chain Length:409
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo5
Chain IDs:E (auth: 5)
Chain Length:207
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo6
Chain IDs:F (auth: 6)
Chain Length:181
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo15
Chain IDs:G (auth: 7)
Chain Length:129
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Gene (Uniprot):nqo9
Chain IDs:H (auth: 8)
Chain Length:182
Number of Molecules:1
Biological Source:THERMUS THERMOPHILUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRC1
Chain IDs:I (auth: A), HA (auth: a)
Chain Length:446
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRC2
Chain IDs:J (auth: B), IA (auth: b)
Chain Length:439
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B
Gene (Uniprot):MT-CYB
Chain IDs:K (auth: C), JA (auth: c)
Chain Length:379
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C1, HEME PROTEIN,
Gene (Uniprot):CYC1
Chain IDs:L (auth: D), KA (auth: d)
Chain Length:241
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRFS1
Chain IDs:M (auth: E), LA (auth: e)
Chain Length:196
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRB
Mutagens:YES
Chain IDs:N (auth: F), MA (auth: f)
Chain Length:110
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRQ
Chain IDs:O (auth: G), NA (auth: g)
Chain Length:81
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRH
Chain IDs:P (auth: H), OA (auth: h)
Chain Length:78
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCRFS1
Chain IDs:Q (auth: I), PA (auth: i)
Chain Length:65
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCR10
Chain IDs:R (auth: J), QA (auth: j)
Chain Length:62
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME B-C1 COMPLEX SUBUN
Gene (Uniprot):UQCR11
Chain IDs:S (auth: K), RA (auth: k)
Chain Length:56
Number of Molecules:2
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):MT-CO1
Chain IDs:T (auth: L)
Chain Length:514
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):MT-CO2
Chain IDs:U (auth: M)
Chain Length:227
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):MT-CO3
Chain IDs:V (auth: N)
Chain Length:391
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX4I1
Chain IDs:W (auth: O)
Chain Length:378
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX5A
Chain IDs:X (auth: P)
Chain Length:281
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX5B
Chain IDs:Y (auth: Q)
Chain Length:98
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE POLYPEPT
Gene (Uniprot):COX6A2
Chain IDs:Z (auth: R)
Chain Length:84
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX6B1
Chain IDs:AA (auth: S)
Chain Length:85
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX6C
Chain IDs:BA (auth: T)
Chain Length:73
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX7A1
Chain IDs:CA (auth: U)
Chain Length:59
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX7B
Chain IDs:DA (auth: V)
Chain Length:56
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX7C
Chain IDs:EA (auth: W)
Chain Length:47
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C OXIDASE SUBUNIT
Gene (Uniprot):COX8B
Chain IDs:FA (auth: X)
Chain Length:46
Number of Molecules:1
Biological Source:BOS TAURUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C
Gene (Uniprot):CYCS
Chain IDs:GA (auth: Y)
Chain Length:104
Number of Molecules:1
Biological Source:BOS TAURUS
Polymer Type:polypeptide(L)
Molecule:NADH\: UBIQUINONE OXIDOREDUCT
Chain IDs:SA (auth: m)
Chain Length:227
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Polymer Type:polypeptide(L)
Molecule:NADH\: UBIQUINONE OXIDOREDUCT
Chain IDs:TA (auth: n)
Chain Length:391
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Chain IDs:UA (auth: o)
Chain Length:378
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Polymer Type:polypeptide(L)
Molecule:NADH-QUINONE OXIDOREDUCTASE S
Chain IDs:VA (auth: p)
Chain Length:281
Number of Molecules:1
Biological Source:ESCHERICHIA COLI
Primary Citation
Arrangement of Electron Transport Chain Components in Bovine Mitochondrial Supercomplex I(1)III(2)Iv(1).
EMBO J. 30 4652 ? (2011)
PMID: 21909073 DOI: 10.1038/EMBOJ.2011.324

Abstact

The respiratory chain in the inner mitochondrial membrane contains three large multi-enzyme complexes that together establish the proton gradient for ATP synthesis, and assemble into a supercomplex. A 19-Å 3D map of the 1.7-MDa amphipol-solubilized supercomplex I(1)III(2)IV(1) from bovine heart obtained by single-particle electron cryo-microscopy reveals an amphipol belt replacing the membrane lipid bilayer. A precise fit of the X-ray structures of complex I, the complex III dimer, and monomeric complex IV indicates distances of 13 nm between the ubiquinol-binding sites of complexes I and III, and of 10-11 nm between the cytochrome c binding sites of complexes III and IV. The arrangement of respiratory chain complexes suggests two possible pathways for efficient electron transfer through the supercomplex, of which the shorter branch through the complex III monomer proximal to complex I may be preferred.

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Primary Citation of related structures
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