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Structural Superimposition

Target ID & Chain

Source ID & Chain

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Structural Entry Filters:

Organisms
- Xenopus laevis (30)
- Homo sapiens (28)
- Synthetic construct (21)
- Schizosaccharomyces pombe (12)
- Methanosarcina barkeri (4)
- Saccharomyces cerevisiae (strain atcc 204508 / s288c) (3)
- Schizosaccharomyces pombe 972h- (3)
- Bradyrhizobium japonicum (3)
- Chaetomium thermophilum (strain dsm 1495 / cbs 144.50 / imi 039719) (2)
- Escherichia coli o157:h7 (2)
- Xenopus laevis laevis (1)
- Mus musculus (1)
Methods
- ELECTRON MICROSCOPY (53)
- X-RAY DIFFRACTION (12)
Years
- 2025 (13)
- 2023 (6)
- 2022 (12)
- 2020 (5)
- 2019 (10)
- 2018 (3)
- 2017 (4)
- 2013 (1)
- 2012 (4)
- 2010 (3)
- 2006 (4)
Symmetry
- P 1 (53)
- P 32 2 1 (4)
- P 21 21 2 (3)
- P 1 21 1 (2)
- P 41 21 2 (2)
- P 63 2 2 (1)
Ligands
- ADP (8)
- ATP (5)
- BU1 (1)
- DTT (1)
- EDO (1)
- G5A (1)
- AMP (1)
- SSA (1)
- SER (1)
Resolution
- 1.5 - 2.0 (1)
- 2.0 - 2.5 (5)
- 2.5 - 3.0 (4)
- 4.0 - 4.5 (1)
- >5 (1)

Search Count: 65

All Selected

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9GXA

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Cenp-A/H4 Di-Tetrasome Assembled On Alpha-Satellite Dna.

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-29
Classification: DNA BINDING PROTEIN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9GXA

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-29

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1L

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Snf2H Bound Nucleosome Complex - Classa1

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ATP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1L

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ATP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1M

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Snf2H Bound Nucleosome Complex - Classa2

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ATP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1M

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ATP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1N

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Snf2H Bound Nucleosome Complex-Classa3

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ATP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1N

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ATP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1O

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Snf2H Bound Nucleosome Complex - Classb1

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1O

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1P

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Snf2H Bound Nucleosome Complex - Classb2

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1P

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1Q

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Snf2H Bound Nucleosome Complex - Classb3

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1Q

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1R

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Snf2H Bound Nucleosome Complex - Classb4

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1R

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1U

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Snf2H Bound Nucleosome Complex - Classc1

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1U

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1V

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Snf2H Bound Nucleosome Complex - Classc2

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1V

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1W

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Snf2H Bound Nucleosome Complex - Classc3

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1W

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1X

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Snf2H Bound Nucleosome Complex - Classd1

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1X

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Ligands: ADP

Structural Superimposition 3D-Fold Search Interaction Explorer

9E1Y

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Empty Nucleosome With 601 Widom Sequence

Organism: Xenopus laevis, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9E1Y

Organism: Xenopus laevis, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2025-01-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8G86

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Human Oct4 Bound To Nucleosome With Human Nmatn1 Sequence (Focused Refinement Of Nucleosome)

Organism: Xenopus laevis, Xenopus laevis laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8G86

Organism: Xenopus laevis, Xenopus laevis laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8G87

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Human Oct4 Bound To Nucleosome With Human Nmatn1 Sequence (Focused Refinement Of Oct4 Bound Region)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8G87

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8G88

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Human Oct4 Bound To Nucleosome With Human Nmatn1 Sequence

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8G88

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8G8B

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Nucleosome With Human Nmatn1 Sequence In Complex With Human Oct4

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8G8B

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8G8E

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Human Oct4 Bound To Nucleosome With Human Lin28B Sequence

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8G8E

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8G8G

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Interaction Of H3 Tail In Lin28B Nucleosome With Oct4

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22
Classification: DNA BINDING PROTEIN/DNA

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8G8G

Organism: Xenopus laevis, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-03-22

Structural Superimposition 3D-Fold Search Interaction Explorer

8ESQ

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Ytm1 Associated Nascent 60S Ribosome State 2

Organism: Schizosaccharomyces pombe
Method: ELECTRON MICROSCOPY
Release Date: 2022-11-30
Classification: RIBOSOME
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8ESQ

Organism: Schizosaccharomyces pombe
Method: ELECTRON MICROSCOPY
Release Date: 2022-11-30
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

Protein Functional Filters:

Enzyme
- Hydrolases (19)
- Transferases (9)
- Ligases (7)
- Oxidoreductases (2)
Uniprots
- P62799 (29)
- P02281 (26)
- P84233 (23)
- Q6AZJ8 (18)
- 157310483 (12)
- 288694 (12)
- P40372 (12)
- Q9P784 (12)
- P79071 (12)
- P25457 (12)
- O13672 (12)
- Q10232 (12)
- O74175 (12)
- O94238 (12)
- O74895 (12)
- O42991 (12)
- O14339 (12)
- Q10192 (12)
- P0CT68 (12)
- P0CT60 (12)
- P79015 (12)
- Q9USG6 (12)
- O74904 (12)
- O94658 (12)
- P05733 (12)
PFAM
- PF00125 (35)
- PF15511 (35)
- PF16211 (34)
- PF00271 (19)
- PF00400 (13)
- PF01159 (12)
- PF01248 (12)
- PF08079 (12)
- PF00297 (12)
- PF00237 (12)
- PF01655 (12)
- PF01929 (12)
- PF17135 (12)
- PF01246 (12)
- PF00572 (12)
- PF00573 (12)
- PF01158 (12)
- PF01907 (12)
- PF16906 (12)
- PF01247 (12)
- PF00327 (12)
- PF14374 (12)
- PF00831 (12)
- PF01294 (12)
- PF00467 (12)

Address

Indian Biological Data Centre, Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone

Faridabad-Gurugram Expressway, Faridabad - 121 001

External Links

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