SOLUTION NMR


NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-1H TOCSY 1.2 mM protein, 20 mM TCEP, methanol 20 methanol 4.0 ambient ?
2 2D 1H-1H NOESY 1.2 mM protein, 20 mM TCEP, methanol 20 methanol 4.0 ambient ?
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE 600
NMR Refinement
Method Details Software
simulated annealing INITIAL STRUCTURE CALCULATION WAS CARRIED OUT USING DEFAULT SCRIPT ANNEAL_NORDC.PY AND TEMPERATURE SCHEDULE 3500-TO-25 IN STEPS OF 12.5. REFINEMENT WAS PERFORMED FOR 3000 STRUCTURES USING DEFAULT SCRIPT REFINE_NORDC.PY WITH TEMPERATURE SCHEDULES 1500-TO-25 IN STEPS OF 3.25 AND 500-TO-25 IN STEPS OF 2.25. FOR STRONGER J-COUPLING CONSTRAINTS ANNEALING DURING REFINEMENT ITS SCALING FACTOR IS RAMPED FROM 1 TO 3 DURING COOLING: JCOUP = CREATE_JCOUPPOT("JCOUP","JNA_COUP_SPBC_IN_METHANOL9.TBL", A=6.98,B=-1.38,C=1.72,PHASE=-60.0) RAMPEDPARAMS.APPEND( MULTRAMP(1,3, "JCOUP.SETSCALE( VALUE )") ) 1
NMR Ensemble Information
Conformer Selection Criteria structures with favorable non-bond energy
Conformers Calculated Total Number 3000
Conformers Submitted Total Number 10
Representative Model 1 (closest to the average)
Computation: NMR Software
# Classification Version Software Name Author
1 data analysis ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3 data analysis ? Sparky Goddard
4 chemical shift assignment ? Sparky Goddard
5 peak picking ? Sparky Goddard
6 structure solution 2.32 X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
7 refinement 2.32 X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
8 collection ? TopSpin Bruker Biospin
9 data analysis ? TopSpin Bruker Biospin
10 geometry optimization ? ProcheckNMR Laskowski and MacArthur
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