SOLUTION NMR


NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 3D_13C-separated_NOESY 1 mM cofactor B ubiquitin-like domain U-15N, 13C; 20 mM sodium phosphate buffer; 50 mM NaCl 50 mM NaCl + 20 mM NaPO4 90% H2O/10% D2O 6.5 AMBIENT 298
2 3D_15N-separated_NOESY 1 mM cofactor B ubiquitin-like domain U-15N, 13C; 20 mM sodium phosphate buffer; 50 mM NaCl 50 mM NaCl + 20 mM NaPO4 90% H2O/10% D2O 6.5 AMBIENT 298
3 3D_13C-separated_NOESY aromatic 1 mM cofactor B ubiquitin-like domain U-15N, 13C; 20 mM sodium phosphate buffer; 50 mM NaCl 50 mM NaCl + 20 mM NaPO4 90% H2O/10% D2O 6.5 AMBIENT 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker DRX 600
NMR Refinement
Method Details Software
TORSION ANGLE DYNAMICS FOLLOWED BY CARTESIAN MOLECULAR DYNAMICS IN EXPLICIT SOLVENT The C-terminal residues 91-120 were disordered (as evidenced by 15N relaxation data) and were excluded from the model. INITIAL STRUCTURES WERE GENERATED USING THE CANDID MODULE OF CYANA. ADDITIONAL NOE ASSIGNMENTS WERE DETERMINED MANUALLY. PHI AND PSI TORSION ANGLE CONSTRAINTS WERE GENERATED FROM CHEMICAL SHIFT DATABASE SEARCHING USING THE PROGRAM TALOS (G. CORNILESCU). 1
NMR Ensemble Information
Conformer Selection Criteria target function
Conformers Calculated Total Number 100
Conformers Submitted Total Number 20
Representative Model 4 (closest to the average)
Computation: NMR Software
# Classification Version Software Name Author
1 collection 3.1 XwinNMR BRUKER BIOSPIN
2 processing 2.1 NMRPipe F. DELAGLIO
3 data analysis 1.4 XEASY C. BARTELS
4 data analysis 1.1.0 SPSCAN R. GLASER
5 refinement 1.0.6 CYANA HERRMANN, GUENTERT, WUETHRICH
6 refinement 2.0.6 XPLOR-NIH SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE
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