ISDA: 9TG4

Deposition Date 2025-11-28

Release Date 2026-04-08

Last Version Date 2026-04-08

Entry Detail

PDB ID:

9TG4

Keywords:

TRANSPORT PROTEIN

Title:

Structure of the YbjP lipoprotein bound to the AcrABZ-TolC efflux pump

Biological Source:

Source Organism(s):

Escherichia coli (Taxon ID: 562)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.17 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer membrane protein TolC
Gene (Uniprot):tolC
Chain IDs:A, B, C
Chain Length:480
Number of Molecules:3
Biological Source:Escherichia coli

UniProt ID:P02930 Pfam ID:PF02321

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Multidrug efflux pump subunit
Gene (Uniprot):acrA
Chain IDs:D, E, F, G, H, I
Chain Length:397
Number of Molecules:6
Biological Source:Escherichia coli

UniProt ID:P0AE06 Pfam ID:PF25917, PF25876, PF25944, PF25967

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Multidrug efflux pump subunit
Gene (Uniprot):acrB
Chain IDs:J, K, L
Chain Length:1049
Number of Molecules:3
Biological Source:Escherichia coli

UniProt ID:P31224 Pfam ID:PF00873

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Multidrug efflux pump accesso
Gene (Uniprot):acrZ
Chain IDs:M, N, O
Chain Length:49
Number of Molecules:3
Biological Source:Escherichia coli

UniProt ID:P0AAW9 Pfam ID:PF10766

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Uncharacterized lipoprotein Y
Gene (Uniprot):ybjP
Chain IDs:P, Q, R
Chain Length:160
Number of Molecules:3
Biological Source:Escherichia coli

UniProt ID:P75818 Pfam ID:PF12883

Ligand Molecules

Primary Citation

Structure of the YbjP lipoprotein bound to the AcrABZ-TolC efflux pump

Kaplan, E, Harris, A, Horne, J, Petsolari, E, Luisi, B.Show

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Primary Citation of related structures

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