9QEF image
Deposition Date 2025-03-09
Release Date 2026-01-21
Last Version Date 2026-01-21
Entry Detail
PDB ID:
9QEF
Title:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Co-purified transmembrane pro
Gene (Uniprot):BIN_B_02039
Chain IDs:Y (auth: E), AA (auth: A)
Chain Length:123
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Co-purified peptide
Gene (Uniprot):MSMEI_5553
Chain IDs:Z (auth: F), BA (auth: B)
Chain Length:65
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex cytoch
Gene (Uniprot):MSMEG_4262
Chain IDs:B (auth: M), N (auth: G)
Chain Length:408
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex cytoch
Gene (Uniprot):MSMEG_4263
Chain IDs:C (auth: N), O (auth: H)
Chain Length:556
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex cytoch
Gene (Uniprot):MSMEG_4261
Chain IDs:A (auth: O), M (auth: C)
Chain Length:236
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein
Gene (Uniprot):MSMEG_2575
Chain IDs:D (auth: P), P (auth: I)
Chain Length:100
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:cytochrome-c oxidase
Gene (Uniprot):MSMEG_4268
Chain IDs:H (auth: Q), T (auth: X)
Chain Length:341
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit
Gene (Uniprot):D806_022970
Chain IDs:G (auth: R), S (auth: L)
Chain Length:575
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable cytochrome c oxidase
Gene (Uniprot):MSMEG_4260
Chain IDs:E (auth: S), Q (auth: J)
Chain Length:203
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypept
Gene (Uniprot):MSMEG_4267
Chain IDs:F (auth: T), R (auth: K)
Chain Length:139
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit
Gene (Uniprot):MSMEG_4693
Chain IDs:I (auth: U), U (auth: Z)
Chain Length:79
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein MSMEG
Gene (Uniprot):MSMEG_4692, MSMEI_4575
Chain IDs:J (auth: V), V (auth: a)
Chain Length:123
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LpqE protein
Gene (Uniprot):MSMEG_6078
Chain IDs:K (auth: W), W (auth: b)
Chain Length:65
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Cu-Zn]
Gene (Uniprot):sodC
Chain IDs:L (auth: Y), X (auth: c)
Chain Length:236
Number of Molecules:2
Biological Source:Mycolicibacterium smegmatis
Primary Citation
Mycobacterial respiratory chain enzymes and growth are inhibited by decylubiquinone.
Commun Biol 9 43 43 (2025)
PMID: 41372535 DOI: 10.1038/s42003-025-09309-9

Abstact

Aerobic organisms obtain energy by linking electron transfer from NADH to O2, through the respiratory chain, to transmembrane proton translocation. In mycobacteria the respiratory chain is branched; the membrane-bound electron carrier menaquinol (MQH2) donates electrons either to the O2-reducing cytochrome bd or a supercomplex that is composed of a complex (C) III2 dimer flanked by two CIVs. Here, we measured the dimethyl-naphthoquinone (DMNQH2, a menaquinol analogue) oxidation:O2 reduction activities of the CIII2CIV2 supercomplex and cytochrome bd in the presence of an analogue (decylubiquinone, DCQ) of the mammalian electron carrier, ubiquinol. The data show that DCQH2 inhibits both the CIII2CIV2 and cytochrome bd activities, suggesting that DCQ/DCQH2 interferes with both branches of the respiratory chain. Cryo-EM data of the M. smegmatis supercomplex shows that oxidized DCQ binds in the electron donor site (Qo) of CIII2. Accordingly, growth of M. smegmatis cells was impaired in the presence of DCQ. Remarkably, DCQ also impairs intracellular growth of virulent M. tuberculosis cells in human primary macrophages suggesting that the compound could potentially be used as an adjuvant during tuberculosis disease treatment.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback