9O3D image
Deposition Date 2025-04-07
Release Date 2026-01-21
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9O3D
Keywords:
Title:
Crystal structure of broadly neutralizing antibody HEPC108 in complex with Hepatitis C virus envelope glycoprotein E2 ectodomain
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.68 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HEPC108 Fab Heavy Chain
Chain IDs:A, E, H, I
Chain Length:237
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HEPC108 Fab Light Chain
Chain IDs:B, F, J, L
Chain Length:216
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope Glycoprotein E2
Chain IDs:C, D, G, K
Chain Length:262
Number of Molecules:4
Biological Source:Hepatitis C virus subtype 1b
Primary Citation
Structural repertoire of HCV broadly neutralizing antibodies targeting the E2 front layer supersite.
Structure ? ? ? (2026)
PMID: 41633361 DOI: 10.1016/j.str.2026.01.005

Abstact

Structural studies of the hepatitis C virus (HCV) E2 glycoprotein in complex with broadly neutralizing antibodies (bNAbs) have been instrumental in mapping neutralizing epitopes and guiding the rational design of immunogens. However, the robust structural classification of HCV bNAbs is lacking, complicating immunogen design. The majority of HCV bNAbs recognize the E2 front layer (FRLY) supersite. Here, we developed a roadmap for the structural classification of FRLY-specific bNAbs. We discovered three distinct structural classes, each utilizing a unique binding mode to engage the FRLY supersite. HCV strains with multiple FRLY polymorphisms had a profound impact on the binding and neutralization of bNAbs from distinct FRLY classes. Our findings establish the FRLY as a major antigenic supersite targeted by three bNAb classes and underscore the intrinsic structural plasticity of VH1-69-encoded HCV bNAbs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback