9NDS image
Deposition Date 2025-02-18
Release Date 2026-01-14
Last Version Date 2026-01-14
Entry Detail
PDB ID:
9NDS
Keywords:
Title:
Miniaturized HLA A*02-TAX bound to A6c134 TCR
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 31
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CSM8 A*02:01/MHC class I anti
Gene (Uniprot):HLA-A
Chain IDs:A, E (auth: H)
Chain Length:250
Number of Molecules:2
Biological Source:synthetic construct, Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:X protein
Chain IDs:B (auth: C), F (auth: P)
Chain Length:9
Number of Molecules:2
Biological Source:Human T-cell leukemia virus type I
Polymer Type:polypeptide(L)
Molecule:A6c134 TCR alpha chain
Chain IDs:C (auth: D), G (auth: J)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:A6c134 TCR beta chain
Chain IDs:D (auth: E), H (auth: K)
Chain Length:255
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Design of solubly expressed miniaturized SMART MHCs.
Proc.Natl.Acad.Sci.USA 123 e2505932123 e2505932123 (2026)
PMID: 41481462 DOI: 10.1073/pnas.2505932123

Abstact

The precise recognition of specific peptide-major histocompatibility complex (pMHC) complexes by T cell receptors (TCRs) plays a key role in infectious disease, cancer, and autoimmunity. A critical step in many immunobiological studies is the identification of T cells expressing TCRs specific to a given pMHC antigen. However, the intrinsic instability of empty class-I MHCs limits their soluble expression in Escherichia coli and makes it very difficult to characterize even a small fraction of possible pMHC/TCR interactions. To overcome this limitation, we designed small proteins which buttress the peptide binding groove of class I MHCs, replacing β2-microglobulin (β2m) and the heavy chain α3 domain, and enable soluble and partially soluble expression in E. coli of H-2Db and A*02:01, respectively. We demonstrate that these soluble, monomeric, antigen-receptive, truncated (SMART) MHCs retain both peptide- and TCR-binding specificity and that peptide-bound structures of both allomorphs are similar to their full-length, native counterparts. With extension to the majority of HLA alleles, SMART MHCs should be broadly useful for probing the T cell repertoire in approaches ranging from yeast display to T cell staining.

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Primary Citation of related structures
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