9M3L image
Deposition Date 2025-03-03
Release Date 2026-01-21
Last Version Date 2026-01-21
Entry Detail
PDB ID:
9M3L
Keywords:
Title:
Crystal structure of ADP-ribosylated endolytic muramidase TdeM from Pseudomonas aeruginosa
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ADP-ribosylated endolytic mur
Gene (Uniprot):PA0989
Chain IDs:A, B
Chain Length:186
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Primary Citation
A Pseudomonas aeruginosa endolytic muramidase targets cell-wall peptidoglycan in bacterial competition.
J.Biol.Chem. 301 110642 110642 (2025)
PMID: 40885384 DOI: 10.1016/j.jbc.2025.110642

Abstact

Pseudomonas aeruginosa is an opportunistic pathogen that frequently resides in multispecies communities. During chronic infections, P. aeruginosa employs a diverse arsenal of antibacterial weapons to compete with other bacteria for resources and space. Using genetic and biochemical approaches, we identified a type VI secretion system-dependent antibacterial effector-immunity pair, PseM (P. aeruginosa secreted endolytic muramidase) and PA0990 in P. aeruginosa. Our findings demonstrate that PseM functions as an endolytic muramidase, targeting prey bacteria by hydrolytically cleaving cell-wall peptidoglycan, whereas its immunity partner PA0990 provides self-protection. The X-ray crystal structure of PseM reveals a homodimeric configuration, with its active site formed by segments from both monomers. Through structural analysis and macromolecular docking simulations, we further elucidate the substrate-binding residues critical for the activity of PseM. Importantly, we show that PseM contributes to P. aeruginosa growth among bacterial competition. Together, these results uncover a novel antibacterial mechanism mediated by PseM, highlighting the dynamic nature of interspecies and intraspecies competition within bacterial populations.

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