9EVT image
Deposition Date 2024-04-02
Release Date 2026-03-18
Last Version Date 2026-03-18
Entry Detail
PDB ID:
9EVT
Keywords:
Title:
Structure of the small subunit of the flowering plant mitoribosome with the maturation factor RsgA
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.27 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:KA (auth: 2)
Chain Length:1560
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:EngC GTPase domain-containing
Chain IDs:AA (auth: 7)
Chain Length:496
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S2
Chain IDs:A
Chain Length:212
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:B
Chain Length:554
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S4
Chain IDs:C
Chain Length:128
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:S5 DRBM domain-containing pro
Chain IDs:D
Chain Length:110
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:bS6m
Chain IDs:E
Chain Length:383
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:uS7m,Small ribosomal subunit
Chain IDs:F
Chain Length:157
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15a
Chain IDs:G
Chain Length:129
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9
Chain IDs:H
Chain Length:384
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:I
Chain Length:725
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S11
Chain IDs:J
Chain Length:304
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:K
Chain Length:125
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:uS13m
Chain IDs:L
Chain Length:154
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:M
Chain Length:155
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:N
Chain Length:414
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Chain IDs:O
Chain Length:136
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:P
Chain Length:110
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:Q
Chain Length:237
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:R
Chain Length:212
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S21
Chain IDs:S
Chain Length:100
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S31, mi
Chain IDs:T
Chain Length:94
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:U
Chain Length:192
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:mS26
Chain IDs:V
Chain Length:193
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:W
Chain Length:483
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:BnaC06g06470D protein
Chain IDs:X
Chain Length:496
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:MOSC domain-containing protei
Chain IDs:Y
Chain Length:102
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Mitochondrial 28S ribosomal p
Chain IDs:Z
Chain Length:153
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:BA (auth: a)
Chain Length:212
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:IMS import disulfide relay-sy
Chain IDs:CA (auth: b)
Chain Length:554
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Chain IDs:DA (auth: c)
Chain Length:128
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:IGR domain-containing protein
Chain IDs:EA (auth: d)
Chain Length:110
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:mS45
Chain IDs:FA (auth: e)
Chain Length:383
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:mS47
Chain IDs:GA (auth: f)
Chain Length:157
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:(rape) hypothetical protein
Chain IDs:HA (auth: h)
Chain Length:384
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:PROP1-like PPR domain-contain
Chain IDs:IA (auth: i)
Chain Length:725
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Polymer Type:polypeptide(L)
Molecule:RRM domain-containing protein
Chain IDs:JA (auth: k)
Chain Length:125
Number of Molecules:1
Biological Source:Brassica oleracea var. botrytis
Primary Citation
Structural insights into cauliflower mitoribosome in translation state and in association with a late assembly factor.
Nat Commun 16 10839 10839 (2025)
PMID: 41330901 DOI: 10.1038/s41467-025-65864-z

Abstact

Ribosomes are key molecular machines that translate mRNA into proteins. Mitoribosomes are specific ribosomes found in mitochondria, which have been shown to be remarkably diverse across eukaryotic lineages. In plants, they possess unique features, including additional rRNA domains stabilized by plant-specific proteins. However, the structural specificities of plant mitoribosomes in translation state remained unknown. We used cryo-electron microscopy to provide a high-resolution structural characterization of the cauliflower mitoribosome, in translating and maturation states. The structure reveals the mitoribosome bound with a tRNA in the peptidyl site, along with a segment of mRNA and a nascent polypeptide. Moreover, using structural data, nanopore sequencing and mass spectrometry, we identify a set of 19 ribosomal RNA modifications. Additionally, we observe a late assembly intermediate of the small ribosomal subunit, in complex with the RsgA assembly factor. This reveals how a plant-specific extension of RsgA blocks the mRNA channel to prevent premature mRNA association before complete small subunit maturation. Our findings elucidate key aspects of translation in angiosperm plant mitochondria, revealing its distinct features compared to other eukaryotic lineages.

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Primary Citation of related structures
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