ISDA: 9D9N

Deposition Date 2024-08-21

Release Date 2025-09-03

Last Version Date 2026-03-25

Entry Detail

PDB ID:

9D9N

Keywords:

HYDROLASE

Title:

Crystal structure of NDM-1 complexed with compound 5

Biological Source:

Source Organism(s):

Klebsiella pneumoniae (Taxon ID: 573)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.68 Å

R-Value Free:

0.24

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Metallo-beta-lactamase type 2
Gene (Uniprot):blaNDM-1
Chain IDs:A, B
Chain Length:233
Number of Molecules:2
Biological Source:Klebsiella pneumoniae

UniProt ID:C7C422 Pfam ID:PF00753 EC:3.5.2.6

Ligand Molecules

A1A25

GOL

Primary Citation

Structure-Based Design of Reversible, Quinoline-2(1 H )‐one Inhibitors of Serine- and Metallo-Carbapenemases.

Jacobs, L.M.C, Jaishankar, P, Zheng, J, Hantz, E.R, Lee, I, Narramneni, K, Poore, N, Torres, N, Jackson, J.K, Williams, O, Darch, S.E, Shaw, L.N, Chen, Y, Renslo, A.R.Show

Acs Omega 11 15316 15327 (2026)

PMID: 41835567 DOI: 10.1021/acsomega.5c12676

Primary Citation of related structures

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