ISDA: 7BGD

Deposition Date 2021-01-06

Release Date 2021-12-08

Last Version Date 2024-07-10

Entry Detail

PDB ID:

7BGD

Keywords:

RIBOSOME

Title:

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Biological Source:

Source Organism(s):

Staphylococcus aureus (Taxon ID: 93061)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:A
Chain Length:32
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:B (auth: a)
Chain Length:32
Number of Molecules:1
Biological Source:Staphylococcus aureus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S2
Gene (Uniprot):rpsB
Chain IDs:C (auth: b)
Chain Length:255
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FZ25 Pfam ID:PF00318

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S4
Gene (Uniprot):rpsD
Chain IDs:D (auth: d)
Chain Length:200
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FXK6 Pfam ID:PF00163, PF01479

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S5
Gene (Uniprot):rpsE
Chain IDs:E (auth: e)
Chain Length:166
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW23 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S6
Gene (Uniprot):rpsF
Chain IDs:F (auth: f)
Chain Length:98
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2G113 Pfam ID:PF01250

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S8
Gene (Uniprot):rpsH
Chain IDs:G (auth: h)
Chain Length:132
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW20 Pfam ID:PF00410

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S11
Gene (Uniprot):rpsK
Chain IDs:H (auth: k)
Chain Length:129
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW31 Pfam ID:PF00411

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Gene (Uniprot):rpsL
Chain IDs:I (auth: l)
Chain Length:137
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:P0A0H0 Pfam ID:PF00164

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S15
Gene (Uniprot):rpsO
Chain IDs:J (auth: o)
Chain Length:89
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2G2Q1 Pfam ID:PF00312

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Gene (Uniprot):rpsP
Chain IDs:K (auth: p)
Chain Length:91
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FZ45 Pfam ID:PF00886

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S17
Gene (Uniprot):rpsQ
Chain IDs:L (auth: q)
Chain Length:87
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FW15 Pfam ID:PF00366

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S18
Gene (Uniprot):rpsR
Chain IDs:M (auth: r)
Chain Length:80
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2G111 Pfam ID:PF01084

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S20
Gene (Uniprot):rpsT
Chain IDs:N (auth: t)
Chain Length:83
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325)

UniProt ID:Q2FXY6 Pfam ID:PF01649

Ligand Molecules

Primary Citation

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus

Belinite, M, Khusainov, I, Soufari, H, Marzi, S, Romby, P, Yusupov, M, Hashem, Y.Show

Front Mol Biosci 8 1022 ? (2021)

Primary Citation of related structures

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