5O60 image
Deposition Date 2017-06-02
Release Date 2017-07-12
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5O60
Keywords:
Title:
Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:tRNA CCA-end acetylated (Phe)
Chain IDs:IA (auth: 2)
Chain Length:3
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein bL37
Gene (Uniprot):MSMEG_1916
Chain IDs:A (auth: 3)
Chain Length:24
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:B (auth: A)
Chain Length:61
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:C (auth: B)
Chain Length:57
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L2
Gene (Uniprot):rplB
Chain IDs:D (auth: C)
Chain Length:278
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L3
Gene (Uniprot):rplC
Chain IDs:E (auth: D)
Chain Length:217
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L4
Gene (Uniprot):rplD
Chain IDs:F (auth: E)
Chain Length:215
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L5
Gene (Uniprot):rplE
Chain IDs:G (auth: F)
Chain Length:37
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L6
Gene (Uniprot):rplF
Chain IDs:H (auth: G)
Chain Length:75
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L9
Gene (Uniprot):rplI
Chain IDs:I (auth: H)
Chain Length:151
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L10
Gene (Uniprot):rplJ
Chain IDs:J (auth: I)
Chain Length:175
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L11
Gene (Uniprot):rplK
Chain IDs:K (auth: J)
Chain Length:142
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L13
Gene (Uniprot):rplM
Chain IDs:L (auth: K)
Chain Length:147
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L14
Gene (Uniprot):rplN
Chain IDs:M (auth: L)
Chain Length:122
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L15
Gene (Uniprot):rplO
Chain IDs:N (auth: M)
Chain Length:147
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L16
Gene (Uniprot):rplP
Chain IDs:O (auth: N)
Chain Length:138
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L17
Gene (Uniprot):rplQ
Chain IDs:P (auth: O)
Chain Length:199
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L18
Gene (Uniprot):rplR
Chain IDs:Q (auth: P)
Chain Length:127
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L19
Gene (Uniprot):rplS
Chain IDs:R (auth: Q)
Chain Length:113
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L20
Gene (Uniprot):rplT
Chain IDs:S (auth: R)
Chain Length:129
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L21
Gene (Uniprot):rplU
Chain IDs:T (auth: S)
Chain Length:103
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L22
Gene (Uniprot):rplV
Chain IDs:U (auth: T)
Chain Length:153
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L23
Gene (Uniprot):rplW
Chain IDs:V (auth: U)
Chain Length:100
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L24
Gene (Uniprot):rplX
Chain IDs:W (auth: V)
Chain Length:105
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L25
Gene (Uniprot):rplY
Chain IDs:X (auth: W)
Chain Length:215
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L27
Gene (Uniprot):rpmA
Chain IDs:Y (auth: X)
Chain Length:88
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L28
Gene (Uniprot):rpmB
Chain IDs:Z (auth: Y)
Chain Length:64
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L29
Gene (Uniprot):rpmC
Chain IDs:AA (auth: Z)
Chain Length:77
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L30
Gene (Uniprot):rpmD
Chain IDs:BA (auth: a)
Chain Length:61
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L32
Gene (Uniprot):rpmF
Chain IDs:CA (auth: b)
Chain Length:57
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L33 1
Gene (Uniprot):rpmG1
Chain IDs:DA (auth: c)
Chain Length:278
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L34
Gene (Uniprot):rpmH
Chain IDs:EA (auth: d)
Chain Length:217
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L35
Gene (Uniprot):rpmI
Chain IDs:FA (auth: e)
Chain Length:215
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L36
Gene (Uniprot):rpmJ
Chain IDs:GA (auth: f)
Chain Length:37
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L31
Gene (Uniprot):rpmE
Chain IDs:HA (auth: g)
Chain Length:75
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Primary Citation
The Complete Structure of the Mycobacterium smegmatis 70S Ribosome.
Cell Rep 20 149 160 (2017)
PMID: 28683309 DOI: 10.1016/j.celrep.2017.06.029

Abstact

The ribosome carries out the synthesis of proteins in every living cell. It consequently represents a frontline target in anti-microbial therapy. Tuberculosis ranks among the leading causes of death worldwide, due in large part to the combination of difficult-to-treat latency and antibiotic resistance. Here, we present the 3.3-Å cryo-EM structure of the 70S ribosome of Mycobacterium smegmatis, a close relative to the human pathogen Mycobacterium tuberculosis. The structure reveals two additional ribosomal proteins and localizes them to the vicinity of drug-target sites in both the catalytic center and the decoding site of the ribosome. Furthermore, we visualized actinobacterium-specific rRNA and protein expansions that extensively remodel the ribosomal surface with implications for polysome organization. Our results provide a foundation for understanding the idiosyncrasies of mycobacterial translation and reveal atomic details of the structure that will facilitate the design of anti-tubercular therapeutics.

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Primary Citation of related structures
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