11YO image
Deposition Date 2026-03-18
Release Date 2026-04-01
Last Version Date 2026-04-01
Entry Detail
PDB ID:
11YO
Keywords:
PHOTOSYNTHESIS
Title:
Single-conformation model re-refinement of 2F/S3-rich PSII intermediate structure at 2.09 Angstrom resolution
Biological Source:
Source Organism(s):
Thermosynechococcus vestitus BP-1 (Taxon ID: 197221)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.09 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
P 21 21 21
11YO validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1 1
Gene (Uniprot):psbA1
Chain IDs:A, U (auth: a)
Chain Length:344
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P0A444 Pfam ID:PF00124 EC:1.10.3.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction
Gene (Uniprot):psbB
Chain IDs:B, V (auth: b)
Chain Length:510
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIQ1 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction
Gene (Uniprot):psbC
Chain IDs:C, W (auth: c)
Chain Length:461
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIF8 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD1, psbD2
Chain IDs:D, X (auth: d)
Chain Length:352
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8CM25 Pfam ID:PF00124 EC:1.10.3.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:E, Y (auth: e)
Chain Length:84
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIP0 Pfam ID:PF00283, PF00284
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:F, Z (auth: f)
Chain Length:45
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIN9 Pfam ID:PF00283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbH
Chain IDs:G (auth: H), AA (auth: h)
Chain Length:66
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DJ43 Pfam ID:PF00737
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbI
Chain IDs:H (auth: I), BA (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DJZ6 Pfam ID:PF02532
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbJ
Chain IDs:I (auth: J), CA (auth: j)
Chain Length:40
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P59087 Pfam ID:PF01788
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbK
Chain IDs:J (auth: K), DA (auth: k)
Chain Length:46
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q9F1K9 Pfam ID:PF02533
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbL
Chain IDs:K (auth: L), EA (auth: l)
Chain Length:37
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIN8 Pfam ID:PF02419
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbM
Chain IDs:L (auth: M), FA (auth: m)
Chain Length:36
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DHA7 Pfam ID:PF05151
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II manganese-stab
Gene (Uniprot):psbO
Chain IDs:M (auth: O), GA (auth: o)
Chain Length:272
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P0A431 Pfam ID:PF01716
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein Y
Gene (Uniprot):psbY
Chain IDs:N (auth: R), HA (auth: r)
Chain Length:41
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DKM3 Pfam ID:PF06298
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbT
Chain IDs:O (auth: T), IA (auth: t)
Chain Length:32
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DIQ0 Pfam ID:PF01405
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II 12 kDa extrins
Gene (Uniprot):psbU
Chain IDs:P (auth: U), JA (auth: u)
Chain Length:134
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q9F1L5 Pfam ID:PF06514
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c-550
Gene (Uniprot):psbV
Chain IDs:Q (auth: V), KA (auth: v)
Chain Length:163
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:P0A386 Pfam ID:PF14495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbX
Chain IDs:R (auth: X), LA (auth: x)
Chain Length:41
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q9F1R6 Pfam ID:PF06596
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psb30
Chain IDs:S (auth: Y), MA (auth: y)
Chain Length:46
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DJI1 Pfam ID:PF05969
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbZ
Chain IDs:T (auth: Z), NA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Thermosynechococcus vestitus BP-1
UniProt ID:Q8DHJ2 Pfam ID:PF01737
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME H MET modified residue
Ligand Molecules
BCR
BCT
CL
CLA
DGD
FE2
HEC
LHG
LMG
OEX
PHO
PL9
SQD
STE
Primary Citation
Do crystallographic XFEL data support binding of a water molecule to the oxygen-evolving complex of photosystem II exposed to two flashes of light?
Proc. Natl. Acad. Sci. U.S.A. 118 e2023982118 ? (2021)
PMID: 34117119 DOI: 10.1073/pnas.202398211
Primary Citation of related structures
6W1V
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