<?xml version="1.0" encoding="UTF-8"?>
<processingOptions xmlns="http://www.matrixscience.com/xmlns/schema/mdro_proc_opts_1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" majorVersion="1" minorVersion="8" xsi:schemaLocation="http://www.matrixscience.com/xmlns/schema/mdro_proc_opts_1 http://www.matrixscience.com/xmlns/schema/mdro_proc_opts_1/mdro_proc_opts_1.xsd">
	<scanOptions level="1">
		<preferredSpectrumFormat>0</preferredSpectrumFormat>
		<uncentroidingHalfWidth>0.05</uncentroidingHalfWidth>
		<uncentroidingPointsPerDa>400</uncentroidingPointsPerDa>
		<alwaysUncentroid>true</alwaysUncentroid>
		<regriddingPointsPerDa>400</regriddingPointsPerDa>
		<aggregationMethod>sum</aggregationMethod>
		<minPeakCount>1</minPeakCount>
		<minPeakCharge>1</minPeakCharge>
		<maxPeakCharge>5</maxPeakCharge>
	</scanOptions>
	<scanOptions level="2">
		<preferredSpectrumFormat>0</preferredSpectrumFormat>
		<uncentroidingHalfWidth>0.05</uncentroidingHalfWidth>
		<uncentroidingPointsPerDa>400</uncentroidingPointsPerDa>
		<alwaysUncentroid>true</alwaysUncentroid>
		<regriddingPointsPerDa>400</regriddingPointsPerDa>
		<aggregationMethod>timedomain</aggregationMethod>
		<minPeakCount>10</minPeakCount>
		<minPeakCharge>1</minPeakCharge>
		<maxPeakCharge>2</maxPeakCharge>
		<usePrecursorAsMaxCharge>false</usePrecursorAsMaxCharge>
		<precursorChargeSources>
			<surveyScan priority="0"/>
			<file priority="1"/>
		</precursorChargeSources>
		<precursorDefaultCharges>2 3</precursorDefaultCharges>
		<redeterminePrecursorMZ>true</redeterminePrecursorMZ>
		<precursorMZTolerance>0.6</precursorMZTolerance>
		<minPrecursorPeakCount>1</minPrecursorPeakCount>
		<maxPrecursorPeakCount>1</maxPrecursorPeakCount>
		<ignoreSingleChargedPrecursor>false</ignoreSingleChargedPrecursor>
	</scanOptions>
	<timeDomainOptions>
		<minPrecursorMass>700</minPrecursorMass>
		<maxPrecursorMass>16000</maxPrecursorMass>
		<precursorGroupingTolerance>0.01</precursorGroupingTolerance>
		<precursorIonMobilityGroupTol>0.026</precursorIonMobilityGroupTol>
		<maxIntermediateTime>0</maxIntermediateTime>
		<maxIntermediateScans>1</maxIntermediateScans>
		<useInterScanCount>false</useInterScanCount>
		<minScansInGroup>1</minScansInGroup>
		<summingType>0</summingType>
		<summingFirstDissType>1000000</summingFirstDissType>
		<summingSecondDissType>1000000</summingSecondDissType>
		<summingNormaliseIntensities>false</summingNormaliseIntensities>
		<mergeReporterFromDissType>-1</mergeReporterFromDissType>
		<mergeReporterIntoDissType>-1</mergeReporterIntoDissType>
		<moveReporterIonPeaks>false</moveReporterIonPeaks>
		<moveReporterIonPeaksMS3>false</moveReporterIonPeaksMS3>
	</timeDomainOptions>
	<peakSelectionOptions>
		<filteringThreshold>0.6</filteringThreshold>
		<minFilteringPeakMZ>50</minFilteringPeakMZ>
		<maxFilteringPeakMZ>100000</maxFilteringPeakMZ>
		<filteringMinSNRatio>1</filteringMinSNRatio>
		<minPeakWidth>0.005</minPeakWidth>
		<expectedPeakWidth>0.05</expectedPeakWidth>
		<maxPeakWidth>0.5</maxPeakWidth>
		<maxIterations>500</maxIterations>
		<rejectWidthOutliers>false</rejectWidthOutliers>
		<baselineCorrection>false</baselineCorrection>
		<baselineSubtractMethod>0</baselineSubtractMethod>
		<peakFitMethod>0</peakFitMethod>
		<isotopeEnvelopeMode>0</isotopeEnvelopeMode>
		<isotopePeakIntensities></isotopePeakIntensities>
		<singlePeakCharge>1</singlePeakCharge>
		<singlePeakWindow>false</singlePeakWindow>
		<minSglPeakWindowMZ>112.5</minSglPeakWindowMZ>
		<maxSglPeakWindowMZ>130.5</maxSglPeakWindowMZ>
	</peakSelectionOptions>
	<vendorPeakSelectionOptions vendor="3" name="WatersMS2E">
		<vendorOption type="1" option="bEnableCuda" description="Enable GPU processing">1</vendorOption>
		<vendorOption type="3" option="chromFWHMMin" description="FWHM in minutes"></vendorOption>
		<vendorOption type="4" option="heThresholdCounts" description="High energy detection threshold">100</vendorOption>
		<vendorOption type="5" option="leThresholdCounts" description="Low energy detection threshold">250</vendorOption>
		<vendorOption type="6" option="lockMassToleranceAMU" description="Lock mass error tolerance">0.25</vendorOption>
		<vendorOption type="7" option="lockmassZ1" description="Da/e of the external lock spray peak"></vendorOption>
		<vendorOption type="8" option="lockmassZ2" description="Da/e of the external lock spray peak">785.8427</vendorOption>
		<vendorOption type="9" option="msResolution" description="MS TOF resolution"></vendorOption>
		<vendorOption type="2" option="binIntenThreshold" description="Minimum integrated intensity">750</vendorOption>
	</vendorPeakSelectionOptions>
	<vendorPeakSelectionOptions vendor="2" name="SciexAnalyst">
		<vendorOption type="10" option="MaxPeaks" description="Maximum peaks per scan">1999</vendorOption>
	</vendorPeakSelectionOptions>
</processingOptions>
