Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
Funso_TMT_5plex_A1	A1	Trypsin	Specific			False	Oxidation (M)			False	False	1	2		Reporter ion MS2		1260	8842	0	12821	4863	0	7958	498	455	0	43	3.88	9.36	NaN	0.54	360	382631	7370	1.93	600	8.14	25016	4035	3807	16.13	20.53	552	13.68	+	1.7353	2.0994	158980	169460	
Funso_TMT_5plex_A2	A2	Trypsin	Specific			False	Oxidation (M)			False	False	1	2		Reporter ion MS2		1241	8652	0	12594	4710	0	7884	489	443	0	46	3.88	9.41	NaN	0.58	360	378116	7284	1.93	545	7.48	24332	3964	3731	16.29	20.54	497	12.54	+	1.7978	2.1751	154990	165420	
Funso_TMT_5plex_B1	B1	Trypsin	Specific			False	Oxidation (M)			False	False	1	2		Reporter ion MS2		1286	8763	0	12521	5005	0	7516	659	602	0	57	5.26	12.03	NaN	0.76	424	322988	7197	2.23	660	9.17	21677	4094	3883	18.89	24.09	581	14.19	+	1.6163	1.9539	148650	159250	
Funso_TMT_5plex_B2	B2	Trypsin	Specific			False	Oxidation (M)			False	False	1	2		Reporter ion MS2		1234	8506	0	12128	4884	0	7244	657	610	0	47	5.42	12.49	NaN	0.65	404	312445	6932	2.22	683	9.85	20274	3886	3664	19.17	23.83	594	15.29	+	1.5134	1.8705	147120	157910	
A1																																360																		
A2																																360																		
B1																																424																		
B2																																404																		
Total																	5021	34763	0	50064	19462	0	30602	2303	2110	0	193	4.6	10.84	NaN	0.63	632	1396180					91299	15979	15085	17.5	22.12	2224	13.92		1.6561	2.0177	152020	162670	
