Sequence N-term cleavage window C-term cleavage window Amino acid before First amino acid Second amino acid Second last amino acid Last amino acid Amino acid after A Count R Count N Count D Count C Count Q Count E Count G Count H Count I Count L Count K Count M Count F Count P Count S Count T Count W Count Y Count V Count U Count O Count Length Missed cleavages Mass Proteins Leading razor protein Start position End position Gene names Protein names Unique (Groups) Unique (Proteins) Charges PEP Score Identification type Exp 1 Identification type Exp 2 Identification type Exp 3 Fraction Average Fraction Std. Dev. Fraction 1 Fraction 2 Fraction 3 Fraction 4 Fraction 5 Fraction 6 Fraction 7 Fraction 8 Fraction 9 Fraction 10 Experiment Exp 1 Experiment Exp 2 Experiment Exp 3 Intensity Intensity Exp 1 Intensity Exp 2 Intensity Exp 3 Reverse Potential contaminant id Protein group IDs Mod. peptide IDs Evidence IDs MS/MS IDs Best MS/MS Oxidation (M) site IDs MS/MS Count LFQ intensity Exp 1 LFQ intensity Exp 2 LFQ intensity Exp 3 AAAAAAAAAAGAAGGR ______________________________ AAAAAAAAAGAAGGRGSGPGRRRHLVPGAG M A A G R G 12 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 1197.6214 Q86U42 Q86U42 2 17 PABPN1 Polyadenylate-binding protein 2 yes yes 2 1.1606E-26 202.2 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 82864000 4609800 78254000 0 0 1544 0 0;1;2;3 0;1 1 2 3693100 20998000 0 AAAAAAALESWQAAAPR ______________________________ AAAAALESWQAAAPRKRRSAARRPRRREAA M A A P R K 10 1 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 17 0 1624.8322 Q9UH36 Q9UH36 2 18 SRRD SRR1-like protein yes yes 2 1.3459E-18 114.86 By MS/MS 6 0 1 1 0 0 0 0 1 2146 1 4 2 2 1 0 0 0 AAAAAAALQAK TILRQARNHKLRVDKAAAAAAALQAKSDEK RVDKAAAAAAALQAKSDEKAAVAGKKPVVG K A A A K S 8 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 0 955.54508 P36578 P36578 354 364 RPL4 60S ribosomal protein L4 yes yes 2 4.0064E-05 146.54 By MS/MS By MS/MS By MS/MS 3.55 1.72 2 1 2 3 2 1 1 3 7 301950000 1254200 69171000 231530000 2 762 2 5;6;7;8;9;10;11;12;13;14;15 3;4;5;6;7;8 7 6 1254200 19199000 36139000 AAAAAAGAGPEMVR ______________________________ MAAAAAAGAGPEMVRGQVFDVGPRYTNLSY M A A V R G 7 1 0 0 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 1 0 0 14 0 1241.6187 P28482 P28482 2 15 MAPK1 Mitogen-activated protein kinase 1 yes yes 2 2.2878E-05 119.16 By MS/MS By MS/MS 4.6 1.5 1 1 1 2 3 2 16206000 0 9445000 6760700 3 694 3 16;17;18;19;20 9;10;11 11 3 0 3411600 942990 AAAAAEQQQFYLLLGNLLSPDNVVR ______________________________ YLLLGNLLSPDNVVRKQAEETYENIPGQSK M A A V R K 5 1 2 1 0 3 1 1 0 0 5 0 0 1 1 1 0 0 1 2 0 0 25 0 2700.4235 O00410 O00410 2 26 IPO5 Importin-5 yes yes 2;3 2.8269E-19 112.06 By MS/MS 2 0 2 2 5505300 0 0 5505300 4 119 4 21;22 12;13 13 2 0 0 1244100 AAAAALSQQQSLQER SASSSASPGRSQSPRAAAAALSQQQSLQER AAAAALSQQQSLQERLRLREERKQQEELMK R A A E R L 5 1 0 0 0 4 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 15 0 1570.8063 Q8WUQ7 Q8WUQ7 129 143 CACTIN Cactin yes yes 2 7.1508E-09 174.4 By MS/MS 2 0 1 1 2679200 0 0 2679200 5 1677 5 23 14 14 1 0 0 605450 AAAAASHLNLDALR ______________________________ MAAAAASHLNLDALREVLECPICMESFTEE M A A L R E 6 1 1 1 0 0 0 0 1 0 3 0 0 0 0 1 0 0 0 0 0 0 14 0 1392.7474 Q13049 Q13049 2 15 TRIM32 E3 ubiquitin-protein ligase TRIM32 yes yes 2 2.4525E-34 209.19 By matching By MS/MS By MS/MS 3 0 3 1 1 1 27437000 3978000 5759300 17700000 6 1217 6 24;25;26 15;16 15 2 4589700 2455200 3432900 AAAADSFSGGPAGVR ______________________________ AAAADSFSGGPAGVRLPRSPPLKVLAEQLR M A A V R L 5 1 0 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 0 0 15 0 1332.6422 Q96E14 Q96E14 2 16 RMI2 RecQ-mediated genome instability protein 2 yes yes 2 3.1244E-05 157.38 By matching By MS/MS By matching 7.25 0.829 1 1 2 2 1 1 18568000 6304800 6037900 6225700 7 1771 7 27;28;29;30 17 17 1 10648000 2747000 954460 AAAAELSLLEK ______________________________ ______________________________ M A A E K S 4 0 0 0 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1114.6234 O43324 O43324 2 12 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes yes 2 0.00039206 116.3 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 29288000 0 4784800 24503000 8 194 8 31;32;33;34 18;19;20 20 3 0 2603800 3888400 AAAAGAAAAAAAEGEAPAEMGALLLEK ______________________________ EGEAPAEMGALLLEKETRGATERVHGSLGD M A A E K E 14 0 0 0 0 0 4 3 0 0 3 1 1 0 1 0 0 0 0 0 0 0 27 0 2395.2053 Q96KQ7 Q96KQ7 2 28 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes yes 3 7.6184E-21 103.9 By MS/MS 2.5 0.5 1 1 2 4001100 0 0 4001100 9 1805 9 35;36 21 21 1 0 0 854810 AAAAGGGGPGTAVGATGSGIAAAAAGLAVYR ______________________________ GSGIAAAAAGLAVYRRKDGGPATKFWESPE M A A Y R R 12 1 0 0 0 0 0 9 0 1 1 0 0 0 1 1 2 0 1 2 0 0 31 0 2513.2986 Q92922 Q92922 2 32 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 3 8.42E-49 140.8 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 8851800 0 3702600 5149200 10 1731 10 37;38;39 22;23;24 22 3 0 1667300 1125200 AAAAQLSLTQLSSGNPVYEK ______________________________ LSLTQLSSGNPVYEKYYRQVDTGNTGRVLA M A A E K Y 4 0 1 0 0 2 1 1 0 0 3 1 0 0 1 3 1 0 1 1 0 0 20 0 2047.0586 P42566 P42566 2 21 EPS15 Epidermal growth factor receptor substrate 15 yes yes 2 3.6299E-15 116.96 By MS/MS 2 0 1 1 1058900 0 1058900 0 11 803 11 40 25 25 0 0 476850 0 AAAAVAFLSFIK QEKVIKTLDFSTPGRAAAAVAFLSFIKDKW PGRAAAAVAFLSFIKDKWSEETHLSGGYLL R A A I K D 5 0 0 0 0 0 0 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 12 0 1207.6965 P03246;P03247 P03246 89 100 yes no 2 0.00059428 123.88 By MS/MS By MS/MS 8 0.707 1 2 1 1 3 38434000 0 9254000 29180000 12 407 12 41;42;43;44 26;27;28;29 26 4 0 4210200 5219300 AAAAVSESWPELELAER ______________________________ AAVSESWPELELAERERRRELLLTGPGLEE M A A E R E 5 1 0 0 0 0 4 0 0 0 2 0 0 0 1 2 0 1 0 1 0 0 17 0 1827.9003 Q8N1G4 Q8N1G4 2 18 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 4.4592E-06 147.24 By MS/MS 3 0 1 1 7769700 0 0 7769700 13 1600 13 45 30 30 1 0 0 1507000 AAAAVVVPAEWIK ______________________________ ______________________________ M A A I K N 5 0 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 1 0 3 0 0 13 0 1323.7551 Q8NI27 Q8NI27 2 14 THOC2 THO complex subunit 2 yes yes 2 0.0036456 93.325 By matching By MS/MS By MS/MS 3 2.33 3 1 1 1 1 1 2 4 43691000 450450 6289900 36950000 14 1647 14 46;47;48;49;50;51;52 31;32;33;34;35;36 33 5 450450 2929200 7770200 AAADGGGPGGASVGTEEDGGGVGHR ______________________________ ASVGTEEDGGGVGHRTVYLFDRREKESELG M A A H R T 4 1 0 2 0 0 2 10 1 0 0 0 0 0 1 1 1 0 0 2 0 0 25 0 2136.9421 A6NHR9 A6NHR9 2 26 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 0 362.61 By MS/MS By MS/MS 1 0 3 2 1 28661000 0 18590000 10071000 15 15 15 53;54;55 37;38;39 37 3 0 9086500 2169900 AAADTLQGPMQAAYR SKLLKSKNLTDAIARAAADTLQGPMQAAYR AAADTLQGPMQAAYREAFQSVVLPAFEKSC R A A Y R E 5 1 0 1 0 2 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 15 0 1562.7511 Q6P2E9 Q6P2E9 1101 1115 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.00030077 148.32 By MS/MS 2 0 1 1 2725400 0 2725400 0 16 1489 16 56 40 40 1 0 1227300 0 AAAEIYEEFLAAFEGSDGNK SKKEQEELKKKEDEKAAAEIYEEFLAAFEG YEEFLAAFEGSDGNKVKTFVRGGVVNAAKE K A A N K V 5 0 1 1 0 0 4 2 0 1 1 1 0 2 0 1 0 0 1 0 0 0 20 0 2130.9746 O15042 O15042 112 131 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 1.3906E-13 150.12 By MS/MS 2 0 1 1 2957900 0 0 2957900 17 163 17 57 41 41 1 0 0 668430 AAAETQSLR ______________________________ ______________________________ M A A L R E 3 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 9 0 945.48796 Q13523 Q13523 2 10 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 2 0.054717 61.582 By matching By MS/MS 1.67 0.471 1 2 2 1 30074000 26737000 3336500 0 18 1255 18 58;59;60 42 42 1 28299000 1502500 0 AAAFQHLLLLVGIHLLK LQTLKELEAHSAEARAAAFQHLLLLVGIHL AFQHLLLLVGIHLLKSPAESCDLLGDIQTC R A A L K S 3 0 0 0 0 1 0 1 2 1 6 1 0 1 0 0 0 0 0 1 0 0 17 0 1856.14 Q9BQG0 Q9BQG0 592 608 MYBBP1A Myb-binding protein 1A yes yes 3 0.00087554 76.391 By MS/MS 2 0 1 1 1153000 0 0 1153000 19 1885 19 61 43 43 1 0 0 260550 AAALAAAVAQDPAASGAPSS KRLKEEKQKRKKEARAAALAAAVAQDPAAS AAVAQDPAASGAPSS_______________ R A A S S - 10 0 0 1 0 1 0 1 0 0 1 0 0 0 2 3 0 0 0 1 0 0 20 0 1695.8428 Q8TAE8 Q8TAE8 203 222 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 2 0.007698 60.255 By MS/MS By MS/MS By MS/MS 7 0 3 1 1 1 25603000 6801100 7443400 11358000 20 1651 20 62;63;64 44;45;46 44 3 14658000 4274100 2015400 AAALATVNAWAEQTGMK IPIITVLGDSKNNVRAAALATVNAWAEQTG ALATVNAWAEQTGMKEWLEGEDLSEELKKE R A A M K E 6 0 1 0 0 1 1 1 0 0 1 1 1 0 0 0 2 1 0 1 0 0 17 0 1731.8614 Q14008 Q14008 959 975 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 3.4609E-27 199.7 By MS/MS By MS/MS 1 0 2 1 1 26750000 0 4352000 22398000 21 1279 21 65;66 47;48 48 2 0 2127200 4826000 AAALATVNAWAEQTGMKEWLEGEDLSEELKK IPIITVLGDSKNNVRAAALATVNAWAEQTG KEWLEGEDLSEELKKENPFLRQELLGWLAE R A A K K E 6 0 1 1 0 1 6 2 0 0 4 3 1 0 0 1 2 2 0 1 0 0 31 2 3417.6762 Q14008 Q14008 959 989 CKAP5 Cytoskeleton-associated protein 5 yes yes 3;4 1.721E-20 99.446 By MS/MS 1.5 0.5 2 2 4 16675000 0 0 16675000 22 1279 22 67;68;69;70 49;50;51 49 3 0 0 3639700 AAALEFLNR TVDLKPDWGKGYSRKAAALEFLNRFEEAKR KGYSRKAAALEFLNRFEEAKRTYEEGLKHE K A A N R F 3 1 1 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1003.5451 P31948 P31948 79 87 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 2.8708E-11 170.32 By MS/MS 3 0 1 1 9008000 0 0 9008000 23 726 23 71 52 52 1 0 0 1747100 AAALVLQTIWGYK VLINKSGNRSEKEVRAAALVLQTIWGYKEL VRAAALVLQTIWGYKELRKPLEKEGWKKSD R A A Y K E 3 0 0 0 0 1 0 1 0 1 2 1 0 0 0 0 1 1 1 1 0 0 13 0 1432.8078 O60716 O60716 821 833 CTNND1 Catenin delta-1 yes yes 2 0.001119 113.22 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 7549100 0 2469600 5079400 24 230 24 72;73;74;75 53;54 53 2 0 1004600 985170 AAAMDVDTPSGTNSGAGK ______________________________ MDVDTPSGTNSGAGKKRFEVKKWNAVALWA M A A G K K 4 0 1 2 0 0 0 3 0 0 0 1 1 0 1 2 2 0 0 1 0 0 18 0 1648.7363 P62877 P62877 2 19 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 2 3.7662E-05 98.105 By MS/MS 9 0 2 2 4276600 0 4276600 0 25 1045 25;26 76;77 55;56 55 501 2 0 3424500 0 AAAMDVDTPSGTNSGAGKK ______________________________ DVDTPSGTNSGAGKKRFEVKKWNAVALWAW M A A K K R 4 0 1 2 0 0 0 3 0 0 0 2 1 0 1 2 2 0 0 1 0 0 19 1 1776.8312 P62877 P62877 2 20 RBX1 E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed yes yes 2 4.0571E-09 144.47 By MS/MS By MS/MS 9 0 2 1 1 5034300 0 1528400 3505900 26 1045 27 78;79 57;58 58 2 0 1223900 1119900 AAAPQAWAGPMEEPPQAQAPPR ETQEPSPILDSEETRAAAPQAWAGPMEEPP AGPMEEPPQAQAPPRGPGSPAEDLMFMESA R A A P R G 7 1 0 0 0 3 2 1 0 0 0 0 1 0 6 0 0 1 0 0 0 0 22 0 2270.0902 Q16643 Q16643 391 412 DBN1 Drebrin yes yes 3 9.0394E-07 78.794 By MS/MS 2 0 1 1 10456000 0 10456000 0 27 1395 28 80 59;60 60 2 0 4708700 0 AAAPTQIEAELYYLIAR ______________________________ APTQIEAELYYLIARFLQSGPCNKSAQVLV M A A A R F 5 1 0 0 0 1 2 0 0 2 2 0 0 0 1 0 1 0 2 0 0 0 17 0 1892.0044 Q6RI45 Q6RI45 2 18 BRWD3 Bromodomain and WD repeat-containing protein 3 yes yes 2 0.0052626 67.153 By MS/MS 1.5 0.5 1 1 2 759540 0 0 759540 28 1500 29 81;82 61;62 62 2 0 0 166820 AAAQEQYSAAVAR MVIDGVTYPGNIKEKAAAQEQYSAAVARGE EKAAAQEQYSAAVARGESAGLVRATGRKTE K A A A R G 6 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 13 0 1334.6579 CON__Q3T052 CON__Q3T052 100 112 yes yes 2 6.3507E-08 172.98 By MS/MS By MS/MS By MS/MS 5.6 2.58 2 2 1 2 1 2 31831000 28599000 0 3231300 + 29 85 30 83;84;85;86;87 63;64;65;66 63 4 33572000 0 483440 AAASHLFPFEQL QKLKGGPKKTKREKKAAASHLFPFEQL___ EKKAAASHLFPFEQL_______________ K A A Q L - 3 0 0 0 0 1 1 0 1 0 2 0 0 2 1 1 0 0 0 0 0 0 12 0 1329.6717 Q01831 Q01831 929 940 XPC DNA repair protein complementing XP-C cells yes yes 2 0.032487 77.732 By MS/MS 2 0 1 1 12612000 0 0 12612000 30 1140 31 88 67 67 1 0 0 2850200 AAASVTPPGSLELLQPGFSK ______________________________ TPPGSLELLQPGFSKTLLGTKLEAKYLCSA M A A S K T 3 0 0 0 0 1 1 2 0 0 3 1 0 1 3 3 1 0 0 1 0 0 20 0 1969.052 Q12933 Q12933 2 21 TRAF2 TNF receptor-associated factor 2 yes yes 2 1.1666E-13 146.96 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 17441000 0 6951800 10489000 31 1213 32 89;90;91 68;69 68 2 0 2307100 1750700 AAATGAVAASAASGQAEGK ______________________________ GAVAASAASGQAEGKKITDLRVIDLKSELK M A A G K K 9 0 0 0 0 1 1 3 0 0 0 1 0 0 0 2 1 0 0 1 0 0 19 0 1587.7853 Q9NWH9 Q9NWH9 2 20 SLTM SAFB-like transcription modulator yes yes 2 2.7805E-80 245.5 By matching By MS/MS By MS/MS 4.14 3.44 1 3 1 1 1 1 2 4 59242000 2962700 7001000 49278000 32 2078 33 92;93;94;95;96;97;98 70;71;72;73 71 4 3569700 3451500 19951000 AAATGAVAASAASGQAEGKK ______________________________ AVAASAASGQAEGKKITDLRVIDLKSELKR M A A K K I 9 0 0 0 0 1 1 3 0 0 0 2 0 0 0 2 1 0 0 1 0 0 20 1 1715.8802 Q9NWH9 Q9NWH9 2 21 SLTM SAFB-like transcription modulator yes yes 2 1.9449E-57 220.21 By matching By MS/MS 1.33 0.471 2 1 1 2 31662000 0 1584500 30077000 33 2078 34 99;100;101 74;75 75 2 0 774490 6637100 AAATMATPLPGR SPPSPGRRREQRRPRAAATMATPLPGRAGG RPRAAATMATPLPGRAGGPATPLSPTRLSR R A A G R A 4 1 0 0 0 0 0 1 0 0 1 0 1 0 2 0 2 0 0 0 0 0 12 0 1155.607 Q03252 Q03252 17 28 LMNB2 Lamin-B2 yes yes 2 0.054597 68.847 By MS/MS 3 0 1 1 3482700 0 3482700 0 34 1156 35 102 76 76 0 0 1484700 0 AAATQPDAKDTPDEPWAFPAR QINLSNIRAGNLARRAAATQPDAKDTPDEP DAKDTPDEPWAFPAREFLRKKLIGKEVCFT R A A A R E 6 1 0 3 0 1 1 0 0 0 0 1 0 1 4 0 2 1 0 0 0 0 21 1 2254.0655 Q7KZF4 Q7KZF4 63 83 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.0030739 54.834 By MS/MS 1.5 0.5 1 1 2 5396600 0 5396600 0 35 1518 36 103;104 77 77 1 0 2465300 0 AAAVAAAGAGEPQSPDELLPK ______________________________ AGAGEPQSPDELLPKGDAEKPEEELEEDDD M A A P K G 7 0 0 1 0 1 2 2 0 0 2 1 0 0 3 1 0 0 0 1 0 0 21 0 1962.0058 Q9NS69 Q9NS69 2 22 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 2 9.4801E-08 104.17 By MS/MS 7.5 0.5 1 1 2 24237000 0 0 24237000 36 2051 37 105;106 78;79 79 2 0 0 3854200 AAAVLPVLDLAQR KRIEAIVKNYPEGHKAAAVLPVLDLAQRQN HKAAAVLPVLDLAQRQNGWLPISAMNKVAE K A A Q R Q 4 1 0 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 2 0 0 13 0 1335.7874 P19404 P19404 76 88 NDUFV2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial yes yes 2 0.0062646 96.89 By matching By MS/MS 7 0 2 1 1 5416800 0 1680800 3736100 37 608 38 107;108 80 80 1 0 965100 662940 AAAVLSGPSAGSAAGVPGGTGGLSAVSSGPR ______________________________ PGGTGGLSAVSSGPRLRLLLLESVSGLLQP M A A P R L 7 1 0 0 0 0 0 8 0 0 2 0 0 0 3 6 1 0 0 3 0 0 31 0 2565.3147 Q8IZL8 Q8IZL8 2 32 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2;3 8.6904E-33 113.53 By matching By MS/MS By MS/MS 3.67 2.91 1 4 2 2 1 4 4 121920000 1914200 42001000 78001000 38 1596 39 109;110;111;112;113;114;115;116;117 81;82;83;84;85;86 82 6 2306400 20721000 17969000 AAAYSAQVQPVDGATR AQMEAEWREALRALRAAAYSAQVQPVDGAT AAYSAQVQPVDGATRKKSQRVCRPRSIWRA R A A T R K 5 1 0 1 0 2 0 1 0 0 0 0 0 0 1 1 1 0 1 2 0 0 16 0 1603.7954 Q9H7E9 Q9H7E9 183 198 C8orf33 UPF0488 protein C8orf33 yes yes 2 2.5922E-36 216.06 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 37228000 0 17656000 19572000 39 1992 40 118;119;120;121 87;88;89 88 3 0 8756100 3122300 AADAEAEVASLNR ALKDAQEKLELAEKKAADAEAEVASLNRRI KKAADAEAEVASLNRRIQLVEEELDRAQER K A A N R R 5 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1315.6368 P06753 P06753 79 91 TPM3 Tropomyosin alpha-3 chain yes yes 2 1.6096E-07 170.47 By MS/MS By MS/MS 6 0 2 1 1 46116000 0 10093000 36023000 40 450 41 122;123 90;91 90 2 0 3493800 5389400 AADALEEQQR SLKVTKGSLEEEKRRAADALEEQQRCISEL EEKRRAADALEEQQRCISELKAETRSLVEQ R A A Q R C 3 1 0 1 0 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1129.5364 Q14980 Q14980 725 734 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0041356 99.802 By MS/MS By MS/MS 1 0 3 2 1 9077100 7797900 1279200 0 41 1327 42 124;125;126 92;93 93 2 7797900 625250 0 AADEEAFEDNSEEYIR TSICEKVIVPNMEFRAADEEAFEDNSEEYI ADEEAFEDNSEEYIRRDLEGSDIDTRRRAA R A A I R R 3 1 1 2 0 0 5 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 16 0 1886.7806 P55060 P55060 356 371 CSE1L Exportin-2 yes yes 2 0.066084 54.683 By MS/MS 2 0 1 1 3518000 0 0 3518000 42 935 43 127 94 94 0 0 0 794990 AADETWEPFASGK RGSPAINVAVHVFKKAADETWEPFASGKTS KKAADETWEPFASGKTSESGELHGLTTEEE K A A G K T 3 0 0 1 0 0 2 1 0 0 0 1 0 1 1 1 1 1 0 0 0 0 13 0 1407.6307 Q5U7I5 Q5U7I5 56 68 yes yes 2 0.001086 113.63 By MS/MS By MS/MS 9.33 0.471 2 1 1 2 36846000 18616000 0 18230000 43 1459 44 128;129;130 95;96 95 2 10449000 0 6915000 AADIEQQAVFAVFDENK LICKSRSLDRRGIQRAADIEQQAVFAVFDE DIEQQAVFAVFDENKSWYIEDNIYKFCENP R A A N K S 4 0 1 2 0 2 2 0 0 1 0 1 0 2 0 0 0 0 0 2 0 0 17 0 1893.9109 CON__Q28107;P12259 CON__Q28107 538 554 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 2 3.8121E-05 80.522 By MS/MS 7 0 1 1 0 0 0 0 + 44 77 45 131 97 97 1 0 0 0 AADLNGDLTATR HTFKKMLPRDERRFKAADLNGDLTATREEF RFKAADLNGDLTATREEFTAFLHPEEFEHM K A A T R E 3 1 1 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 0 0 12 0 1216.6048 Q15293 Q15293 177 188 RCN1 Reticulocalbin-1 yes yes 2 0.056341 70.977 By matching By MS/MS 4 0.816 1 1 1 2 1 62754000 4902500 0 57852000 45 1354 46 132;133;134 98 98 0 4964400 0 8069300 AADPPAENSSAPEAEQGGAE RRPENPKPQDGKETKAADPPAENSSAPEAE AENSSAPEAEQGGAE_______________ K A A A E - 6 0 1 1 0 1 4 2 0 0 0 0 0 0 3 2 0 0 0 0 0 0 20 0 1896.7973 P67809 P67809 305 324 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 2 5.8893E-17 164.65 By MS/MS By MS/MS By MS/MS 4.4 0.8 1 1 3 1 1 3 131320000 8926700 45351000 77045000 46 1072 47 135;136;137;138;139 99;100;101;102;103;104;105;106 101 8 7151400 11690000 11290000 AADQFDIYSSQQSK CGPGKPSCLNEDAMRAADQFDIYSSQQSKY RAADQFDIYSSQQSKYSHTVNHKPMVCQRQ R A A S K Y 2 0 0 2 0 3 0 0 0 1 0 1 0 1 0 3 0 0 1 0 0 0 14 0 1586.7213 Q7Z6I8 Q7Z6I8 28 41 C5orf24 UPF0461 protein C5orf24 yes yes 2 2.501E-07 169.21 By matching By MS/MS By MS/MS 6.75 0.433 1 3 2 1 1 21900000 3674300 4135800 14090000 47 1534 48 140;141;142;143 107;108 108 2 6713600 2374800 2500200 AADTQVSETLKR ______________________________ ______________________________ M A A K R F 2 1 0 1 0 1 1 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 12 1 1317.6888 Q92616 Q92616 2 13 GCN1L1 Translational activator GCN1 yes yes 2 2.0398E-18 192.12 By MS/MS 1.5 0.5 1 1 2 9249000 0 9249000 0 48 1712 49 144;145 109 109 1 0 4460700 0 AADVENVPPVISTPHHYLISIYR VSQSVCDYFFEAQEKAADVENVPPVISTPH PVISTPHHYLISIYRDKLFFVSVIQTEVPP K A A Y R D 2 1 1 1 0 0 1 0 2 3 1 0 0 0 3 2 1 0 2 3 0 0 23 0 2590.3544 Q9Y2T2 Q9Y2T2 39 61 AP3M1 AP-3 complex subunit mu-1 yes yes 4 0.00023325 65.779 By MS/MS 4.5 0.5 1 1 2 16420000 0 0 16420000 49 2250 50 146;147 110 110 1 0 0 2373700 AAEAAAAPAESAAPAAGEEPSKEEGEPK EQAAPGPAAGGEAPKAAEAAAAPAESAAPA PAAGEEPSKEEGEPKKTEAPAAPAAQETKS K A A P K K 11 0 0 0 0 0 7 2 0 0 0 2 0 0 4 2 0 0 0 0 0 0 28 1 2635.2249 P80723 P80723 122 149 BASP1 Brain acid soluble protein 1 yes yes 3 8.311E-15 91.583 By MS/MS 4 0 1 1 14480000 0 0 14480000 50 1093 51 148 111 111 1 0 0 2365100 AAEAADLGLGAAVPVELR ______________________________ AADLGLGAAVPVELRRERRMVCVEYPGVVR M A A L R R 6 1 0 1 0 0 2 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 18 0 1721.9312 Q9Y5Q8 Q9Y5Q8 2 19 GTF3C5 General transcription factor 3C polypeptide 5 yes yes 2 1.1202E-12 170.95 By matching By MS/MS 3 0.816 1 1 1 1 2 10409000 0 658910 9750200 51 2300 52 149;150;151 112;113 113 2 0 296720 1722300 AAEAADLGLGAAVPVELRR ______________________________ ADLGLGAAVPVELRRERRMVCVEYPGVVRD M A A R R E 6 2 0 1 0 0 2 2 0 0 3 0 0 0 1 0 0 0 0 2 0 0 19 1 1878.0323 Q9Y5Q8 Q9Y5Q8 2 20 GTF3C5 General transcription factor 3C polypeptide 5 yes yes 2 0.00048287 68.515 By MS/MS 4 0 1 1 2425100 0 2425100 0 52 2300 53 152 114 114 0 0 804790 0 AAEAAINILK TCTGEGTSKKLAKHRAAEAAINILKANASI LAKHRAAEAAINILKANASICFAVPDPLMP R A A L K A 4 0 1 0 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1012.5917 O75569 O75569 91 100 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 2 0.020983 82.452 By matching By MS/MS By MS/MS 6 0 3 1 1 1 20827000 1427400 9901200 9498300 53 273 54 153;154;155 115;116 115 2 1900600 3427500 1421000 AAEAEQEMQR KAQITEEEAKLLAQKAAEAEQEMQRIKATA LLAQKAAEAEQEMQRIKATAIRTEEEKRLM K A A Q R I 3 1 0 0 0 2 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 10 0 1161.5084 P35240 P35240 402 411 NF2 Merlin yes yes 2 1.3802E-11 173.23 By MS/MS 3 0 1 1 2699600 0 0 2699600 54 741 55 156 117 117 1 0 0 523600 AAEAGGAEEQYGFLTTPTK EKMEAEDYVMAVVDKAAEAGGAEEQYGFLT GGAEEQYGFLTTPTKQLGAQSPGREPASSI K A A T K Q 4 0 0 0 0 1 3 3 0 0 1 1 0 1 1 0 3 0 1 0 0 0 19 0 1939.9163 P46821 P46821 1052 1070 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 1.4809E-17 183.96 By MS/MS By MS/MS 1 0 2 1 1 26476000 0 5258800 21217000 55 834 56 157;158 118;119 118 2 0 2570400 4571600 AAEAVAAAVGTGATTAAVMAAAGIAAIGPAK PKEKGKIKVIKKEGKAAEAVAAAVGTGATT AVMAAAGIAAIGPAKELEAERSLMSSPEDL K A A A K E 15 0 0 0 0 0 1 4 0 2 0 1 1 0 1 0 3 0 0 3 0 0 31 0 2623.4003 P46821 P46821 791 821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 3.6534E-41 127.63 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 24235000 0 1550300 22685000 56 834 57 159;160;161;162 120;121;122;123 122 4 0 731970 4915400 AAEDDEDDDVDTK DGDEDEEAESATGKRAAEDDEDDDVDTKKQ KRAAEDDEDDDVDTKKQKTDEDD_______ R A A T K K 2 0 0 6 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 13 0 1436.5427 P06454 P06454 91 103 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes yes 2 0.0080518 91.855 By MS/MS 8 0 1 1 1021400 0 0 1021400 57 441 58 163 124 124 1 0 0 156590 AAEDDEDDDVDTKK DGDEDEEAESATGKRAAEDDEDDDVDTKKQ RAAEDDEDDDVDTKKQKTDEDD________ R A A K K Q 2 0 0 6 0 0 2 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 14 1 1564.6377 P06454 P06454 91 104 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes yes 2;3 0.034546 70.17 By MS/MS 8 0.707 1 2 1 4 4143500 0 0 4143500 58 441 59 164;165;166;167 125;126;127 126 3 0 0 665870 AAEEFVNVYYTTMDK MASVDFKTYVDQACRAAEEFVNVYYTTMDK AAEEFVNVYYTTMDKRRRLLSRLYMGTATL R A A D K R 2 0 1 1 0 0 2 0 0 0 0 1 1 1 0 0 2 0 2 2 0 0 15 0 1779.8026 Q9UKK6 Q9UKK6 16 30 NXT1 NTF2-related export protein 1 yes yes 2 7.0935E-07 85.522 By MS/MS 8 0 1 1 0 0 0 0 59 2179 60 168 128 128 1 0 0 0 AAEFGEPTSEQTGTAAGK KVEVENVMKRKFSLRAAEFGEPTSEQTGTA FGEPTSEQTGTAAGKTIAQTTAPVSWKPQD R A A G K T 4 0 0 0 0 1 3 3 0 0 0 1 0 1 1 1 3 0 0 0 0 0 18 0 1750.801 O95425 O95425 1055 1072 SVIL Supervillin yes yes 2 2.3923E-08 143.31 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 18956000 0 9257600 9698500 60 325 61 169;170;171 129;130 130 2 0 4408600 2089700 AAEIYGVTHTR EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQ YIKRAAEIYGVTHTRGIYQKAIEVLSDEHA R A A T R G 2 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 2 0 1 1 0 0 11 0 1216.62 Q9HCS7 Q9HCS7 639 649 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.00012829 139.98 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 12665000 0 8218100 4447300 61 2014 62 172;173 131;132 132 2 0 3700700 862570 AAELAVQNEVGLVDNPLK SKKPGTAVVEFATVKAAELAVQNEVGLVDN LAVQNEVGLVDNPLKISWLEGQPQDAVGRS K A A L K I 3 0 2 1 0 1 2 1 0 0 3 1 0 0 1 0 0 0 0 3 0 0 18 0 1879.0051 Q9NVM6 Q9NVM6 226 243 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2 1.3724E-08 131.13 By matching By MS/MS 6 0 2 1 1 4225900 0 1730000 2495900 62 2067 63 174;175 133 133 1 0 598880 373410 AAELETDIR QAVRHLPQSVRIYIRAAELETDIRAKKRVL VRIYIRAAELETDIRAKKRVLRKALEHVPN R A A I R A 2 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1016.5138 O94906 O94906 379 387 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00055626 126.41 By MS/MS 1.5 0.5 1 1 2 16116000 0 0 16116000 63 305 64 176;177 134 134 1 0 0 3603600 AAELIANSLATAGDGLIELR QQKKAAIISAEGDSKAAELIANSLATAGDG ANSLATAGDGLIELRKLEAAEDIAYQLSRS K A A L R K 5 1 1 1 0 0 2 2 0 2 4 0 0 0 0 1 1 0 0 0 0 0 20 0 1997.0793 P35232 P35232 220 239 PHB Prohibitin yes yes 2;3 1.2902E-14 160.27 By matching By MS/MS 6 0 4 2 2 9989100 0 1202800 8786300 64 740 65 178;179;180;181 135;136 135 2 0 416350 1314500 AAESLADPTEYENLFPGLK VVKLWRENLSKVNQKAAESLADPTEYENLF LADPTEYENLFPGLKEAFVVEEWVKETHAD K A A L K E 3 0 1 1 0 0 3 1 0 0 3 1 0 1 2 1 1 0 1 0 0 0 19 0 2064.0052 P35606 P35606 784 802 COPB2 Coatomer subunit beta yes yes 2 0.00042445 90.412 By MS/MS 2 0 1 1 2575900 0 2575900 0 65 754 66 182 137 137 1 0 1160000 0 AAESLTAIPEPASPQLLETPIHASQIQK PKSQASRNQRWGAVRAAESLTAIPEPASPQ PQLLETPIHASQIQKVEPAGRSRFTPELQP R A A Q K V 5 0 0 0 0 3 3 0 1 3 3 1 0 0 4 3 2 0 0 0 0 0 28 0 2939.5604 Q14676 Q14676 1763 1790 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 7.738E-21 101.59 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 37967000 0 7528800 30439000 66 1310 67 183;184;185;186 138;139 138 2 0 3680000 6501800 AAFAHFPELYDFALSNVAEVDTR EMTTIHYDRITSLQRAAFAHFPELYDFALS LYDFALSNVAEVDTRESLVKFFGPLSSNTL R A A T R E 5 1 1 2 0 0 2 0 1 0 2 0 0 3 1 1 1 0 1 2 0 0 23 0 2582.2442 O60306 O60306 340 362 AQR Intron-binding protein aquarius yes yes 3 0.00040954 68.42 By MS/MS 1.5 0.5 1 1 2 3643300 0 0 3643300 67 225 68 187;188 140 140 0 0 0 800140 AAFALGGLGSGFASNR AQAAAERLGYPVLVRAAFALGGLGSGFASN AFALGGLGSGFASNREELSALVAPAFAHTS R A A N R E 4 1 1 0 0 0 0 4 0 0 2 0 0 2 0 2 0 0 0 0 0 0 16 0 1494.7579 P27708 P27708 556 571 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 4.4933E-05 116.03 By MS/MS 1 0 1 1 12614000 0 12614000 0 68 681 69 189 141 141 1 0 6165300 0 AAFAVEPQGPALGSEPMMLGSPTSPK ______________________________ LGSEPMMLGSPTSPKPGVNAQFLPGFLMGD M A A P K P 4 0 0 0 0 1 2 3 0 0 2 1 2 1 5 3 1 0 0 1 0 0 26 0 2569.2556 Q8NFH5 Q8NFH5 2 27 NUP35 Nucleoporin NUP53 yes yes 3 1.0233E-08 84.942 By MS/MS 5.5 0.5 1 1 2 17456000 0 0 17456000 69 1643 70 190;191 142 142 1 0 0 2586100 AAFGGSGGRGSSSGGGYSSGSSSYGSGGR VSVTSSTISSNVASKAAFGGSGGRGSSSGG GGYSSGSSSYGSGGRQSGSRGGSGGGGSIS K A A G R Q 2 2 0 0 0 0 0 12 0 0 0 0 0 1 0 10 0 0 2 0 0 0 29 1 2500.0599 CON__P35908;CON__P35908v2;P35908 CON__P35908 522 550 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 8.0742E-55 188.44 By MS/MS By MS/MS 5.6 2.97 1 1 1 1 1 1 1 2 1 9 1 338130000 336990000 1143300 0 + 70 65;66 71 192;193;194;195;196;197;198;199;200;201 143;144;145;146;147;148;149;150;151;152 150 10 392610000 915510 0 AAFGGSGGRGSSSGGGYSSGSSSYGSGGRQSGSR VSVTSSTISSNVASKAAFGGSGGRGSSSGG GSSSYGSGGRQSGSRGGSGGGGSISGGGYG K A A S R G 2 3 0 0 0 1 0 13 0 0 0 0 0 1 0 12 0 0 2 0 0 0 34 2 3015.3051 CON__P35908;CON__P35908v2;P35908 CON__P35908 522 555 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 4 1.6996E-31 103.95 By MS/MS 7.67 2.62 1 1 1 3 12235000 12235000 0 0 + 71 65;66 72 202;203;204 153;154;155 154 3 10662000 0 0 AAFTAFEEAQLPR VAEEAADRHPERRMRAAFTAFEEAQLPRLK MRAAFTAFEEAQLPRLKQENPNMRLSQLKQ R A A P R L 4 1 0 0 0 1 2 0 0 0 1 0 0 2 1 0 1 0 0 0 0 0 13 0 1449.7252 Q96CT7 Q96CT7 171 183 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2;3 7.9784E-58 234.2 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 78060000 0 29199000 48862000 72 1761 73 205;206;207;208;209 156;157;158;159 158 4 0 9893100 7310200 AAFTECCQAADK YFYAPELLFFAKRYKAAFTECCQAADKAAC RYKAAFTECCQAADKAACLLPKLDELRDEG K A A D K A 4 0 0 1 2 1 1 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 12 0 1370.5595 CON__P02768-1;P02768 CON__P02768-1 187 198 ALB Serum albumin yes no 2 2.0744E-34 207.83 By MS/MS 9 0 1 1 234150000 234150000 0 0 + 73 44 74 210 160 160 1 131430000 0 0 AAFYHQPWAQEAVGR KIITDVIGNPEEERRAAFYHQPWAQEAVGR AAFYHQPWAQEAVGRHIFAKVQQRRQELEQ R A A G R H 4 1 0 0 0 2 1 1 1 0 0 0 0 1 1 0 0 1 1 1 0 0 15 0 1729.8325 Q92925 Q92925 495 509 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 3 0.048936 42.947 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 27297000 0 8090700 19206000 74 1732 75 211;212;213;214 161;162 161 1 0 2685000 3314900 AAGEQEKLEATNR LKYKRRVRDLAREYRAAGEQEKLEATNRYH YRAAGEQEKLEATNRYHMPKETRGQPARAV R A A N R Y 3 1 1 0 0 1 3 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 13 1 1415.7005 O60231 O60231 285 297 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 3 0.048386 48.704 By MS/MS 2 0.816 1 1 1 3 3808200 0 3808200 0 75 221 76 215;216;217 163 163 1 0 1728600 0 AAGGFTHDELLK AVRKLRKYIVARTQRAAGGFTHDELLKVWK TQRAAGGFTHDELLKVWKGLFYCMWMQDKP R A A L K V 2 0 0 1 0 0 1 2 1 0 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1257.6354 P56182 P56182 43 54 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.0010576 117.52 By MS/MS By matching 4.5 0.5 1 1 1 1 12431000 0 9881200 2549300 76 948 77 218;219 164 164 1 0 3279200 355590 AAGLATMISTMRPDIDNMDEYVR YARVEGREIISNLAKAAGLATMISTMRPDI STMRPDIDNMDEYVRNTTARAFAVVASALG K A A V R N 3 2 1 3 0 0 1 1 0 2 1 0 3 0 1 1 2 0 1 1 0 0 23 1 2569.1975 O75533 O75533 603 625 SF3B1 Splicing factor 3B subunit 1 yes yes 3 7.7294E-20 126.51 By MS/MS 1.5 0.5 1 1 2 34720000 0 0 34720000 77 270 78 220;221 165;166 166 2 0 0 7768700 AAGLGELGAALLQLVR LAFAEDLVLDEEGARAAGLGELGAALLQLV AGLGELGAALLQLVRRLQALRLEREEYVLL R A A V R R 4 1 0 0 0 1 1 3 0 0 5 0 0 0 0 0 0 0 0 1 0 0 16 0 1550.9144 P11474 P11474 299 314 ESRRA Steroid hormone receptor ERR1 yes yes 2 0.0020928 89.548 By matching By MS/MS 4 0 2 1 1 1717700 289450 0 1428200 78 526 79 222;223 167 167 1 225820 0 233270 AAGPGLGNVAMGPR SGQGPNGGMGDPYSRAAGPGLGNVAMGPRQ RAAGPGLGNVAMGPRQHYPYGGPYDRVRTE R A A P R Q 3 1 1 0 0 0 0 4 0 0 1 0 1 0 2 0 0 0 0 1 0 0 14 0 1266.6503 O14497 O14497 1263 1276 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 1.7034E-12 117.84 By MS/MS 1 0 1 1 0 0 0 0 79 134 80 224 168 168 1 0 0 0 AAGTAAALAFLSQESR ______________________________ AGTAAALAFLSQESRTRAGGVGGLRVPAPV M A A S R T 6 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 1 0 0 0 0 0 16 0 1562.8053 O75607 O75607 2 17 NPM3 Nucleoplasmin-3 yes yes 2 0 354.27 By MS/MS By MS/MS 7.4 1.91 1 1 1 2 2 1 2 6 4 269450000 0 70652000 198800000 80 274 81 225;226;227;228;229;230;231;232;233;234 169;170;171;172;173;174;175;176;177 174 9 0 49187000 39964000 AAGTLYTYPENWR ______________________________ ______________________________ M A A W R A 2 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 2 1 2 0 0 0 13 0 1540.731 P26641 P26641 2 14 EEF1G Elongation factor 1-gamma yes yes 2 1.7156E-123 242.83 By MS/MS By MS/MS By MS/MS 5.67 2.77 1 1 1 3 3 2 2 2 3 7 5 398170000 15590000 78479000 304100000 81 674 82 235;236;237;238;239;240;241;242;243;244;245;246;247;248;249 178;179;180;181;182;183;184;185;186;187;188 181 11 12036000 43745000 67562000 AAGVEAAAEVAATEIK ______________________________ AGVEAAAEVAATEIKMEEESGAPGVPSGNG M A A I K M 7 0 0 0 0 0 3 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 16 0 1499.7831 P52272 P52272 2 17 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 3.9156E-60 234.92 By MS/MS By MS/MS By MS/MS 4.06 2.15 3 1 3 3 3 2 1 1 4 6 7 1065500000 58567000 154360000 852610000 82 902 83 250;251;252;253;254;255;256;257;258;259;260;261;262;263;264;265;266 189;190;191;192;193;194;195;196;197;198;199;200;201;202;203;204;205;206;207;208;209;210;211;212 194 24 61854000 63536000 158530000 AAGVEAAAEVAATEIKMEEESGAPGVPSGNGAPGPK ______________________________ GAPGVPSGNGAPGPKGEGERPAQNEKRKEK M A A P K G 9 0 1 0 0 0 6 6 0 1 0 2 1 0 4 2 1 0 0 3 0 0 36 1 3348.6144 P52272 P52272 2 37 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 3 5.196E-12 65.57 By MS/MS 2 0.707 1 2 1 4 4371300 0 4371300 0 83 902 84;85 267;268;269;270 213;214;215 214 423 3 0 1957300 0 AAGVNVEPFWPGLFAK DEVTVTEDKINALIKAAGVNVEPFWPGLFA AGVNVEPFWPGLFAKALANVNIGSLICNVG K A A A K A 3 0 1 0 0 0 1 2 0 0 1 1 0 2 2 0 0 1 0 2 0 0 16 0 1701.8879 P05386 P05386 34 49 RPLP1 60S acidic ribosomal protein P1 yes yes 2 1.1599E-12 120.77 By MS/MS By MS/MS By MS/MS 7.83 1.34 1 1 2 4 3 1 2 6 4 666870000 19457000 101350000 546070000 84 430 86 271;272;273;274;275;276;277;278;279;280;281;282 216;217;218;219;220;221;222;223;224;225;226;227;228;229;230;231;232;233;234;235;236;237 227 22 13962000 51394000 133080000 AAGVVLEMIR RQASQGMVGQLAARRAAGVVLEMIREGKIA LAARRAAGVVLEMIREGKIAGRAVLIAGQP R A A I R E 2 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 2 0 0 10 0 1057.5954 Q9Y230 Q9Y230 55 64 RUVBL2 RuvB-like 2 yes yes 2 7.2012E-23 194.2 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 40524000 0 7975000 32549000 85 2228 87 283;284;285;286;287;288 238;239;240;241 240 4 0 2436800 5116200 AAHLCAEAALR AQGTQVTGRKADVIKAAHLCAEAALRLVKP DVIKAAHLCAEAALRLVKPGNQNTQVTEAW K A A L R L 5 1 0 0 1 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1181.5975 Q9UQ80 Q9UQ80 145 155 PA2G4 Proliferation-associated protein 2G4 yes yes 2 5.6695E-05 143.7 By MS/MS By MS/MS 5 0 2 1 1 67378000 0 5416600 61961000 86 2220 88 289;290 242;243 243 2 0 1396200 8642500 AAIAQALAGEVSVVPPSR PREAYPDGSSKEKRRAAIAQALAGEVSVVP AQALAGEVSVVPPSRLMALLGQALKWQQHQ R A A S R L 5 1 0 0 0 1 1 1 0 1 1 0 0 0 2 2 0 0 0 3 0 0 18 0 1734.9628 Q2TAY7 Q2TAY7 143 160 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2;3 1.3246E-30 201.48 By MS/MS By MS/MS 3.57 0.904 1 2 3 1 5 2 47030000 0 36405000 10625000 87 1407 89 291;292;293;294;295;296;297 244;245;246;247 244 4 0 12272000 1795300 AAIDWFDGK KGEATVSFDDPPSAKAAIDWFDGKEFSGNP DPPSAKAAIDWFDGKEFSGNPIKVSFATRR K A A G K E 2 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1021.4869 P35637;Q92804 P35637 349 357 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 2 0.00010595 114.28 By matching By MS/MS By MS/MS 4.5 1.69 1 2 1 3 2 1 1 3 6 192970000 458090 29000000 163510000 88 756;1723 90 298;299;300;301;302;303;304;305;306;307 248;249;250;251;252;253;254;255;256 253 8 609950 11276000 29309000 AAIDWFDGKEFHGNIIK KGEATVSFDDPPSAKAAIDWFDGKEFHGNI IDWFDGKEFHGNIIKVSFATRRPEFMRGGG K A A I K V 2 0 1 2 0 0 1 2 1 3 0 2 0 2 0 0 0 1 0 0 0 0 17 1 1959.9843 Q92804 Q92804 298 314 TAF15 TATA-binding protein-associated factor 2N yes yes 2;3;4 0.00099465 77.191 By MS/MS By MS/MS 3 1.08 4 6 1 1 4 8 142720000 0 41442000 101280000 89 1723 91 308;309;310;311;312;313;314;315;316;317;318;319 257;258;259;260;261;262;263;264;265 259 9 0 17971000 19967000 AAIDWFDGKEFSGNPIK KGEATVSFDDPPSAKAAIDWFDGKEFSGNP IDWFDGKEFSGNPIKVSFATRRADFNRGGG K A A I K V 2 0 1 2 0 0 1 2 0 2 0 2 0 2 1 1 0 1 0 0 0 0 17 1 1893.9261 P35637 P35637 349 365 FUS RNA-binding protein FUS yes yes 2;3 1.3403E-05 155.66 By MS/MS By MS/MS 3.83 1.71 2 4 5 3 4 4 1 12 11 210470000 0 89209000 121260000 90 756 92 320;321;322;323;324;325;326;327;328;329;330;331;332;333;334;335;336;337;338;339;340;341;342 266;267;268;269;270;271;272;273;274;275;276;277;278;279;280 277 15 0 33151000 22994000 AAIGCGIVESILNWVK KSFGSTCQLSEKFIKAAIGCGIVESILNWV AIGCGIVESILNWVKFKAQVQLNKKCSAVK K A A V K F 2 0 1 0 1 0 1 2 0 3 1 1 0 0 0 1 0 1 0 2 0 0 16 0 1728.9233 P11388 P11388 401 416 TOP2A DNA topoisomerase 2-alpha yes yes 2 9.1852E-05 105.46 By MS/MS 1.5 0.5 1 1 2 6441200 0 0 6441200 91 524 93 343;344 281 281 1 0 0 1423200 AAILQTEVDALR HIEVLKESLTAKEQRAAILQTEVDALRLRL EQRAAILQTEVDALRLRLEEKETMLNKKTK R A A L R L 3 1 0 1 0 1 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 12 0 1298.7194 Q8IUD2;O15083 Q8IUD2 517 528 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 yes no 2 0.014336 88.496 By MS/MS 2 0 1 1 8040200 0 0 8040200 92 1565 94 345 282 282 1 0 0 1816900 AAIMQALWLYIK DPRLARLLGVHTQTRAAIMQALWLYIKHNQ QTRAAIMQALWLYIKHNQLQDGHEREYINC R A A I K H 3 0 0 0 0 1 0 0 0 2 2 1 1 0 0 0 0 1 1 0 0 0 12 0 1419.7948 Q92925 Q92925 329 340 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 2 0.069382 68.016 By MS/MS 3.5 0.5 1 1 2 3178200 0 0 3178200 93 1732 95 346;347 283 283 1 0 0 547550 AALAHSEEVTASQVAATK QRLREQLQLLEEQHRAALAHSEEVTASQVA AHSEEVTASQVAATKTLPNGRDALDGPAAE R A A T K T 6 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 2 0 0 2 0 0 18 0 1782.9112 Q15149 Q15149 2744 2761 PLEC Plectin yes yes 2;3 1.3246E-30 201.48 By MS/MS 1 0 2 2 59107000 0 59107000 0 94 1348 96 348;349 284;285 284 2 0 28891000 0 AALAPLPPLPAQFK ______________________________ MAALAPLPPLPAQFKSIQHHLRTAQEHDKR M A A F K S 4 0 0 0 0 1 0 0 0 0 3 1 0 1 4 0 0 0 0 0 0 0 14 0 1432.8442 Q9NP79 Q9NP79 2 15 VTA1 Vacuolar protein sorting-associated protein VTA1 homolog yes yes 2 0.0011317 100.25 By MS/MS By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 111730000 1034700 51041000 59652000 95 2020 97 350;351;352;353 286;287;288;289;290 289 5 1377800 17668000 8963600 AALDSLSLFTSLGLSEQK ______________________________ DSLSLFTSLGLSEQKARETLKNSALSAQLR M A A Q K A 2 0 0 1 0 1 1 1 0 0 5 1 0 1 0 4 1 0 0 0 0 0 18 0 1878.9939 P47897 P47897 2 19 QARS Glutamine--tRNA ligase yes yes 2 0.021143 52.344 By MS/MS 3.5 0.5 1 1 2 1238100 0 0 1238100 96 838 98 354;355 291 291 1 0 0 236280 AALEALLPYTER RREAPEELLAYEGVRAALEALLPYTERHFQ GVRAALEALLPYTERHFQRLSRTLQAAAFL R A A E R H 3 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 0 0 0 12 0 1345.7242 Q12788 Q12788 755 766 TBL3 Transducin beta-like protein 3 yes yes 2 0.00010798 139.32 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 29387000 0 10826000 18561000 97 1197 99 356;357;358;359;360 292;293;294;295;296 294 5 0 4796200 3881700 AALEAQNALHNMK PQSKGCCFVTFYTRKAALEAQNALHNMKVL RKAALEAQNALHNMKVLPGMHHPIQMKPAD K A A M K V 4 0 2 0 0 1 1 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 13 0 1409.7085 Q92879 Q92879 71 83 CELF1 CUGBP Elav-like family member 1 yes yes 2;3 3.7457E-07 164.97 By MS/MS 4 0 2 2 23404000 0 23404000 0 98 1727 100 361;362 297;298 297 2 0 7767000 0 AALEAVGGTVVLE EIKANVAKAEAEKIKAALEAVGGTVVLE__ IKAALEAVGGTVVLE_______________ K A A L E - 3 0 0 0 0 0 2 2 0 0 2 0 0 0 0 0 1 0 0 3 0 0 13 0 1227.6711 P52815 P52815 186 198 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 2 0.0016449 109.71 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 110740000 0 63643000 47092000 99 913 101 363;364;365;366;367 299;300;301 299 2 0 33125000 7574900 AALEDTLAETEAR LQGLEIELQSQLSMKAALEDTLAETEARFG MKAALEDTLAETEARFGAQLAHIQALISGI K A A A R F 4 1 0 1 0 0 3 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 13 0 1388.6783 CON__P08727;P08727 CON__P08727 318 330 KRT19 Keratin, type I cytoskeletal 19 yes no 2 7.5593E-13 185.08 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 267510000 0 48000000 219500000 + 100 51 102 368;369;370 302;303 303 2 0 13341000 30617000 AALEEVYPDLTPEETRR QGVALLPFVDERRLRAALEEVYPDLTPEET LEEVYPDLTPEETRRNSLGGDVLFVGKHHP R A A R R N 2 2 0 1 0 0 4 0 0 0 2 0 0 0 2 0 2 0 1 1 0 0 17 1 1987.9851 Q9H0D6 Q9H0D6 660 676 XRN2 5-3 exoribonuclease 2 yes yes 3 1.9002E-06 111.06 By MS/MS 2 0 1 1 4593900 0 4593900 0 101 1960 103 371 304 304 1 0 2068700 0 AALEEWLPR LRWTKKATKSPEETRAALEEWLPRELWHEI SPEETRAALEEWLPRELWHEINGLLVGFGQ R A A P R E 2 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 9 0 1083.5713 P78549 P78549 264 272 NTHL1 Endonuclease III-like protein 1 yes yes 2 0.00049767 136.16 By matching By MS/MS 6 0 2 1 1 8308200 0 1873600 6434700 102 1090 104 372;373 305 305 1 0 648560 962690 AALETDENLLLCAPTGAGK EGFKTLNRIQSKLYRAALETDENLLLCAPT TDENLLLCAPTGAGKTNVALMCMLREIGKH R A A G K T 4 0 1 1 1 0 2 2 0 0 4 1 0 0 1 0 2 0 0 0 0 0 19 0 1942.967 O75643 O75643 491 509 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 6.1821E-09 128.96 By MS/MS 1 0 1 1 5727500 0 0 5727500 103 277 105 374 306 306 1 0 0 1234100 AALEYLGSFDHYAT PAMVQTEDQYQLCYRAALEYLGSFDHYAT_ RAALEYLGSFDHYAT_______________ R A A A T - 3 0 0 1 0 0 1 1 1 0 2 0 0 1 0 1 1 0 2 0 0 0 14 0 1556.7147 P10586;P23468 P10586 1894 1907 PTPRF;PTPRD Receptor-type tyrosine-protein phosphatase F;Receptor-type tyrosine-protein phosphatase delta yes no 2 0.0025585 99.013 By MS/MS By matching 3 0 2 1 1 7802300 5631500 0 2170900 104 511 106 375;376 307 307 1 6497400 0 421050 AALGPSSQNVTEYVVR ______________________________ ALGPSSQNVTEYVVRVPKNTTKKYNIMAFN M A A V R V 2 1 1 0 0 1 1 1 0 0 1 0 0 0 1 2 1 0 1 3 0 0 16 0 1689.8686 P35269 P35269 2 17 GTF2F1 General transcription factor IIF subunit 1 yes yes 2 8.6258E-13 176.8 By MS/MS By MS/MS 4 1.41 2 1 1 2 32611000 0 5163600 27448000 105 748 107 377;378;379 308;309;310 309 3 0 2201200 4921900 AALGVLESDLPSAVTLLK ______________________________ GVLESDLPSAVTLLKNLQEQVMAVTAQVKS M A A L K N 3 0 0 1 0 0 1 1 0 0 5 1 0 0 1 2 1 0 0 2 0 0 18 0 1796.0295 Q8NEJ9 Q8NEJ9 2 19 NGDN Neuroguidin yes yes 2 1.0339E-05 104.24 By MS/MS By MS/MS 4.29 2.31 1 1 1 1 2 1 1 6 12195000 0 3045000 9150200 106 1639 108 380;381;382;383;384;385;386 311;312;313;314;315 314 5 0 1054100 1493500 AALGVQSINWQTAFNR ______________________________ ALGVQSINWQTAFNRQAHHTDKFSSQELIL M A A N R Q 3 1 2 0 0 2 0 1 0 1 1 0 0 1 0 1 1 1 0 1 0 0 16 0 1774.9115 Q08188 Q08188 2 17 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 8.6258E-13 176.8 By MS/MS 5.67 2.98 1 1 1 1 1 1 1 1 1 9 7529300 7529300 0 0 107 1181 109 387;388;389;390;391;392;393;394;395 316;317;318;319;320;321;322 317 7 7777600 0 0 AALLELWELR SDEVREKLTVLSEERAALLELWELRRQQYE LSEERAALLELWELRRQQYEQCMDLQLFYR R A A L R R 2 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 1 0 0 0 0 10 0 1212.6867 Q13813 Q13813 450 459 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00049726 128 By MS/MS 1 0 1 1 8944000 0 0 8944000 108 1268 110 396 323 323 1 0 0 1927100 AALLELWELRR SDEVREKLTVLSEERAALLELWELRRQQYE SEERAALLELWELRRQQYEQCMDLQLFYRD R A A R R Q 2 2 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 1 0 0 0 0 11 1 1368.7878 Q13813 Q13813 450 460 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.0395E-07 154.84 By MS/MS 1.5 0.5 2 2 4 20525000 0 0 20525000 109 1268 111 397;398;399;400 324;325;326 324 3 0 0 4466300 AALLNAILHSAYSETFLLPHLK DETKESTSCPVVQKRAALLNAILHSAYSET LHSAYSETFLLPHLKDIPAQHITLFLKYLY R A A L K D 4 0 1 0 0 0 1 0 2 1 6 1 0 1 1 2 1 0 1 0 0 0 22 0 2421.342 Q9H8H0 Q9H8H0 585 606 NOL11 Nucleolar protein 11 yes yes 3 1.4685E-20 132.45 By MS/MS 3 0 1 1 11306000 0 0 11306000 110 1995 112 401 327 327 1 0 0 2192900 AALMESQGQQQEER EREAEQMGNELERLRAALMESQGQQQEERG RAALMESQGQQQEERGQQEREVARLTQERG R A A E R G 2 1 0 0 0 4 3 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 14 0 1603.726 Q14980 Q14980 986 999 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 8.3873E-58 229.73 By MS/MS By MS/MS 1 0 2 1 1 28703000 0 11600000 17103000 111 1327 113 402;403 328;329 328 2 0 5670100 3685100 AALNALQPPEFR ______________________________ PDKAALNALQPPEFRNESSLASTLKTLLFF K A A F R N 3 1 1 0 0 1 1 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 12 0 1325.7092 Q3ZAQ7 Q3ZAQ7 7 18 VMA21 Vacuolar ATPase assembly integral membrane protein VMA21 yes yes 2 0.00023349 131.22 By MS/MS By MS/MS 10 0 2 1 1 5257500 0 3640800 1616800 112 1414 114 404;405 330;331 330 1 0 18419000 3536000 AALNLPEAASYDEVR RIIEESTHCGPQAVRAALNLPEAASYDEVR AALNLPEAASYDEVRGKWQDAHLGKDQRDF R A A V R G 4 1 1 1 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 1 0 0 15 0 1617.7999 O95602 O95602 829 843 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.00047306 140.24 By MS/MS 1 0 1 1 5348400 0 5348400 0 113 330 115 406 332 332 1 0 2614200 0 AALQEEEQASK IDILTELRDKVKSFRAALQEEEQASKQINP KSFRAALQEEEQASKQINPKRPRAL_____ R A A S K Q 3 0 0 0 0 2 3 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1202.5779 O00139 O00139 686 696 KIF2A Kinesin-like protein KIF2A yes yes 2 0.00015326 138.98 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 34597000 0 9507400 25090000 114 104 116 407;408;409 333;334;335 335 3 0 4178500 4866200 AALQELLSK AVVSERLKIRGSLARAALQELLSKGLIKLV RGSLARAALQELLSKGLIKLVSKHRAQVIY R A A S K G 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 971.56515 P62851 P62851 86 94 RPS25 40S ribosomal protein S25 yes yes 2 0.0034612 99.802 By MS/MS By MS/MS 8.67 1.25 1 1 1 2 1 104890000 0 80212000 24680000 115 1039 117 410;411;412 336;337;338 336 3 0 85402000 7883700 AALSALESFLK VLLKWCAHTNVELKKAALSALESFLKQVSN ELKKAALSALESFLKQVSNMVAKNAEMHKN K A A L K Q 3 0 0 0 0 0 1 0 0 0 3 1 0 1 0 2 0 0 0 0 0 0 11 0 1148.6441 P78527 P78527 311 321 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00047404 119.75 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 26748000 0 2008600 24739000 116 1089 118 413;414;415;416;417;418 339;340;341;342 340 4 0 904500 5226800 AALTGLLHR SGTSYKDLMPHDLARAALTGLLHRTSVPKE PHDLARAALTGLLHRTSVPKEVVDYIIFGT R A A H R T 2 1 0 0 0 0 0 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 950.56615 P55084 P55084 82 90 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 2 0.00068939 130.04 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 25784000 0 5012200 20772000 117 938 119 419;420;421 343;344;345 345 3 0 1292000 3041400 AALTIDEK ITKEQPLKVSKALHKAALTIDEKGTEAVGS VSKALHKAALTIDEKGTEAVGSTFLEAIPM K A A E K G 2 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 859.4651 CON__P34955 CON__P34955 358 365 yes yes 2 0.070601 72.492 By MS/MS 6 0 1 1 0 0 0 0 + 118 64 120 422 346 346 1 0 0 0 AALVDLEPGTMDSVR NVYYNESSSQKYVPRAALVDLEPGTMDSVR AALVDLEPGTMDSVRSGPFGQLFRPDNFIF R A A V R S 2 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1572.7818 Q9BUF5 Q9BUF5 63 77 TUBB6 Tubulin beta-6 chain yes yes 2 0.00030722 133.07 By MS/MS 4 0.816 1 1 1 3 38211000 0 0 38211000 119 1905 121 423;424;425 347;348 348 2 0 0 5898500 AALVLEDGSVLR ______________________________ ______________________________ M A A L R G 2 1 0 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 2 0 0 12 0 1241.698 P27708 P27708 2 13 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 5.5167E-18 186.78 By MS/MS By MS/MS 3.4 3.38 2 1 1 1 3 2 41557000 0 24912000 16644000 120 681 122 426;427;428;429;430 349;350;351;352;353 353 5 0 14721000 3548900 AAMDNSEIAGEK NAAVQAVNAHSNILKAAMDNSEIAGEKKSA ILKAAMDNSEIAGEKKSAQWRTVEGALKER K A A E K K 3 0 1 1 0 0 2 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 12 0 1234.55 Q16891 Q16891 258 269 IMMT MICOS complex subunit MIC60 yes yes 2 0.01938 85.154 By MS/MS 3 0 1 1 5072600 0 0 5072600 121 1403 123 431 354 354 1 0 0 983840 AAMEALVVEVTK LQISHEAAACITGLRAAMEALVVEVTKQPA GLRAAMEALVVEVTKQPAIISQLDPVNERM R A A T K Q 3 0 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 12 0 1259.6795 Q08211 Q08211 1105 1116 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0026276 108.47 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 101330000 0 14765000 86569000 122 1182 124;125 432;433;434;435;436 355;356;357;358;359 356 558 5 0 7056500 19563000 AAMIVNQLSK LTKLLNDEDPVVVTKAAMIVNQLSKKEASR VVVTKAAMIVNQLSKKEASRRALMGSPQLV K A A S K K 2 0 1 0 0 1 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 10 0 1073.5903 P14923 P14923 162 171 JUP Junction plakoglobin yes yes 2 0.00039478 129.42 By MS/MS By MS/MS By matching 5 3.61 2 1 1 1 1 4 1 1 64364000 56903000 0 7460300 123 567 126 437;438;439;440;441;442 360;361;362;363;364 363 5 54450000 0 1607400 AAMTDAMVPR EVEVAKLEKQLLEEKAAMTDAMVPRSSYEK LLEEKAAMTDAMVPRSSYEKLQSSLESEVS K A A P R S 3 1 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 10 0 1061.4998 Q9P0K7 Q9P0K7 777 786 RAI14 Ankycorbin yes yes 2 0.054227 69.825 By MS/MS 2 0 1 1 0 0 0 0 124 2115 127 443 365 365 1 0 0 0 AANAAENDFSVSQAEMSSR LKKQMEYERQVASLKAANAAENDFSVSQAE AENDFSVSQAEMSSRQAMLENASDIKLEKF K A A S R Q 5 1 2 1 0 1 2 0 0 0 0 0 1 1 0 4 0 0 0 1 0 0 19 0 1983.8592 Q8NE71 Q8NE71 276 294 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 1.5727E-261 329.46 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 44241000 0 6755300 37486000 125 1638 128 444;445;446;447 366;367;368;369 368 4 0 3042000 8217600 AANATTNPSQLLPLELVDK ______________________________ TTNPSQLLPLELVDKCIGSRIHIVMKSDKE M A A D K C 3 0 2 1 0 1 1 0 0 0 4 1 0 0 2 1 2 0 0 1 0 0 19 0 1994.0684 Q9Y4Y9 Q9Y4Y9 2 20 LSM5 U6 snRNA-associated Sm-like protein LSm5 yes yes 2;3 4.0498E-09 120.53 By MS/MS By MS/MS 9.5 0.5 2 2 1 3 25895000 0 11450000 14445000 126 2290 129 448;449;450;451 370;371;372;373 370 4 0 57927000 26048000 AANVGSMFQYWK ______________________________ ______________________________ M A A W K R 2 0 1 0 0 1 0 1 0 0 0 1 1 1 0 1 0 1 1 1 0 0 12 0 1400.6547 O14529 O14529 2 13 CUX2 Homeobox protein cut-like 2 no no 2 0.00062809 114.84 By matching By MS/MS By MS/MS 2.33 1.11 2 1 2 1 1 4 1 10963000 176880 7486000 3299800 127 135 130 452;453;454;455;456;457 374;375;376;377 374 4 176880 3286900 640000 AANVTLLTSLVEGEAVHLAR KLDKIGLNLPAGRRKAANVTLLTSLVEGEA LLTSLVEGEAVHLARDFGYVCETEFPAKAV K A A A R D 4 1 1 0 0 0 2 1 1 0 4 0 0 0 0 1 2 0 0 3 0 0 20 0 2063.1375 P05549;Q6VUC0;Q92481 P05549 283 302 TFAP2A;TFAP2E;TFAP2B Transcription factor AP-2-alpha;Transcription factor AP-2-epsilon;Transcription factor AP-2-beta yes no 3 0.0017251 62.362 By MS/MS 5 0.816 1 1 1 3 12351000 0 0 12351000 128 435 131 458;459;460 378 378 0 0 0 1906800 AAPCIYWLPLTDSQIVQK EPPAKLLDDLFRKTKAAPCIYWLPLTDSQI CIYWLPLTDSQIVQKEAERAERAKEREKRR K A A Q K E 2 0 0 1 1 2 0 0 0 2 2 1 0 0 2 1 1 1 1 1 0 0 18 0 2102.087 Q9UKV3 Q9UKV3 1220 1237 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.01021 65.234 By MS/MS 3 0 1 1 4622400 0 0 4622400 129 2184 132 461 379 379 1 0 0 896530 AAPDILIATPGR AVGGLDVKSQEAALRAAPDILIATPGRLID ALRAAPDILIATPGRLIDHLHNCPSFHLSS R A A G R L 3 1 0 1 0 0 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 12 0 1193.6768 Q96GQ7 Q96GQ7 338 349 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.02133 83.862 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 45291000 0 16769000 28522000 130 1793 133 462;463;464 380;381;382 381 3 0 7551400 5999400 AAPEEPQQRPPEAVAAAPAGTTSSR RPPEQQDQEGGEAAKAAPEEPQQRPPEAVA PEAVAAAPAGTTSSRVLRGGRDRGRAAAAA K A A S R V 7 2 0 0 0 2 3 1 0 0 0 0 0 0 5 2 2 0 0 1 0 0 25 1 2488.2306 Q96JP5 Q96JP5 24 48 ZFP91 E3 ubiquitin-protein ligase ZFP91 yes yes 3 2.8087E-16 104.55 By matching By MS/MS 3 0 2 1 1 16736000 13456000 3279800 0 131 1802 134 465;466 383 383 1 15525000 1398200 0 AAPGAEFAPNK EGIGAIGGTPPAFNRAAPGAEFAPNKRRRY AFNRAAPGAEFAPNKRRRY___________ R A A N K R 4 0 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 11 0 1071.5349 Q15233 Q15233 457 467 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.014461 87.308 By matching By MS/MS By MS/MS 4 0 3 1 1 1 51788000 3609100 18509000 29670000 132 1351 135 467;468;469 384;385 385 2 2815700 6142600 4846100 AAPGAEFAPNKR EGIGAIGGTPPAFNRAAPGAEFAPNKRRRY FNRAAPGAEFAPNKRRRY____________ R A A K R R 4 1 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 0 0 0 0 12 1 1227.636 Q15233 Q15233 457 468 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 1.0111E-25 205.12 By MS/MS By MS/MS 3 1.3 3 1 3 5 1 5 8 419710000 0 144760000 274950000 133 1351 136 470;471;472;473;474;475;476;477;478;479;480;481;482 386;387;388;389;390;391;392;393;394;395;396;397 391 12 0 49205000 47804000 AAPGAPAEYGYIR ______________________________ ______________________________ M A A I R T 4 1 0 0 0 0 1 2 0 1 0 0 0 0 2 0 0 0 2 0 0 0 13 0 1334.6619 Q99959 Q99959 2 14 PKP2 Plakophilin-2 yes yes 2 0.0072457 83 By matching By MS/MS 2.5 0.5 1 1 1 1 7712200 0 1778200 5934000 134 1870 137 483;484 398 398 1 0 800730 1150900 AAPPQIPDTRR ______________________________ MHNKAAPPQIPDTRRELAELVKRKQELAET K A A R R E 2 2 0 1 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 0 0 0 11 1 1220.6626 Q9HAF1 Q9HAF1 7 17 MEAF6 Chromatin modification-related protein MEAF6 yes yes 3 0.069031 36.32 By MS/MS 7 0 1 1 2791200 0 2791200 0 135 2001 138 485 399 399 1 0 1602700 0 AAPRPAPVAQPPAAAPPSAVGSSAAAPR TSRMAPPASRAPQMRAAPRPAPVAQPPAAA AAPPSAVGSSAAAPRQPGLMAQMATTAAGV R A A P R Q 11 2 0 0 0 1 0 1 0 0 0 0 0 0 8 3 0 0 0 2 0 0 28 1 2532.3561 Q9Y6H1;Q5T1J5 Q9Y6H1 24 51 CHCHD2;CHCHD2P9 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial yes no 3 1.4206E-21 109.26 By MS/MS 7 0 1 1 5129300 0 5129300 0 136 1448 139 486 400 400 1 0 2945300 0 AAPSDGFKPR ______________________________ ______________________________ M A A P R E 2 1 0 1 0 0 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 10 1 1044.5352 Q92979 Q92979 2 11 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 1.2105E-16 176.09 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 94357000 0 51525000 42833000 137 1736 140 487;488;489;490 401;402;403 401 3 0 28885000 7433900 AAPSVTLFPPSSEELQANK ______________________________ VTLFPPSSEELQANKATLVCLISDFYPGAV K A A N K A 3 0 1 0 0 1 2 0 0 0 2 1 0 1 3 3 1 0 0 1 0 0 19 0 1985.0106 P0DOY3;P0DOY2;P0CF74;A0M8Q6 P0DOY3 5 23 IGLC6;IGLC7 Ig lambda-6 chain C region;Ig lambda-7 chain C region yes no 2 6.0731E-09 134.68 By MS/MS 8.2 2.64 1 2 2 5 25697000 25697000 0 0 138 498 141 491;492;493;494;495 404;405;406;407;408;409;410;411;412 408 9 20831000 0 0 AAPTAASDQPDSAATTEK LEETAQLPSAPQGSRAAPTAASDQPDSAAT TAASDQPDSAATTEKAKKIKNLKKKLRQVE R A A E K A 6 0 0 2 0 1 1 0 0 0 0 1 0 0 2 2 3 0 0 0 0 0 18 0 1730.7959 Q9BRP8 Q9BRP8 133 150 WIBG Partner of Y14 and mago yes yes 2 1.3621E-08 139.3 By MS/MS By MS/MS 6 0 2 1 1 7817500 0 4324800 3492700 139 1891 142 496;497 413;414 414 2 0 1497100 522550 AAQAPSSFQLLYDLK EGGKGALALAQAVQRAAQAPSSFQLLYDLK AAQAPSSFQLLYDLKLPVEDKIRIIAQKIY R A A L K L 3 0 0 1 0 2 0 0 0 0 3 1 0 1 1 2 0 0 1 0 0 0 15 0 1650.8617 P11586 P11586 805 819 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.00038594 116.24 By matching By MS/MS By MS/MS 2 0 3 1 1 1 16118000 857390 5084600 10176000 140 528 143 498;499;500 415;416 415 2 1033100 2289700 2299700 AAQDRDQIYR SRSYRGGGGGGGGWRAAQDRDQIYRRRSPS GGGWRAAQDRDQIYRRRSPSPYYSRGGYRS R A A Y R R 2 2 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 10 1 1234.6054 P62995 P62995 252 261 TRA2B Transformer-2 protein homolog beta yes yes 2;3 4.7556E-05 136.33 By MS/MS By MS/MS 6.38 1.15 3 5 3 1 1 5 8 136370000 0 51553000 84816000 141 1055 144 501;502;503;504;505;506;507;508;509;510;511;512;513 417;418;419;420;421;422;423;424;425;426;427;428 426 12 0 17638000 13148000 AAQGEPQVQFK ______________________________ ______________________________ M A A F K L 2 0 0 0 0 3 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 11 0 1201.6091 P62826 P62826 2 12 RAN GTP-binding nuclear protein Ran yes yes 2 0.0001586 131.06 By MS/MS By MS/MS By MS/MS 6.75 0.433 1 3 1 2 1 147650000 6669100 52947000 88038000 142 1035 145 514;515;516;517 429;430;431;432;433;434 432 6 14373000 29359000 15622000 AAQVTIQSSGTFSSK ALSKYGAATFTRTGKAAQVTIQSSGTFSSK AAQVTIQSSGTFSSKFQVDNNNRLLLQQVS K A A S K F 2 0 0 0 0 2 0 1 0 1 0 1 0 1 0 4 2 0 0 1 0 0 15 0 1510.7627 P01023 P01023 1275 1289 A2M Alpha-2-macroglobulin yes yes 2 0.0004747 140.31 By MS/MS By matching 9.67 0.471 1 2 2 1 6124200 5488500 0 635660 143 370 146 518;519;520 435 435 1 4670500 0 1390300 AASAAAASAAAASAASGSPGPGEGSAGGEK ______________________________ SGSPGPGEGSAGGEKRSTAPSAAASASASA M A A E K R 13 0 0 0 0 0 2 6 0 0 0 1 0 0 2 6 0 0 0 0 0 0 30 0 2386.0997 Q13263 Q13263 2 31 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 0 403.81 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 4 3 46404000 0 24900000 21504000 144 1235 147 521;522;523;524;525;526;527 436;437;438 437 3 0 11183000 3677800 AASAAAASAAAASAASGSPGPGEGSAGGEKR ______________________________ GSPGPGEGSAGGEKRSTAPSAAASASASAA M A A K R S 13 1 0 0 0 0 2 6 0 0 0 1 0 0 2 6 0 0 0 0 0 0 31 1 2542.2008 Q13263 Q13263 2 32 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 1.6065E-126 247.36 By MS/MS By MS/MS 2.38 0.857 1 4 2 1 5 3 130560000 0 84254000 46306000 145 1235 148 528;529;530;531;532;533;534;535 439;440;441;442;443;444 444 6 0 36111000 10265000 AASADSTTEGTPADGFTVLSTK KGARKSKKKQGEVSKAASADSTTEGTPADG TEGTPADGFTVLSTKSLFLGQKLNLIHSEI K A A T K S 4 0 0 2 0 0 1 2 0 0 1 1 0 1 1 3 5 0 0 1 0 0 22 0 2126.0015 O75367 O75367 168 189 H2AFY Core histone macro-H2A.1 yes yes 2;3 6.1654E-93 244.56 By MS/MS By MS/MS By MS/MS 4.85 1.59 1 1 2 2 7 4 3 1 8 11 1126200000 14305000 177950000 933910000 146 253 149 536;537;538;539;540;541;542;543;544;545;546;547;548;549;550;551;552;553;554;555 445;446;447;448;449;450;451;452;453;454;455;456;457;458;459;460;461;462;463 450 19 11460000 54072000 135670000 AASAGVPYHGEVPVSLAR CVLRRGSLGFYKDAKAASAGVPYHGEVPVS AGVPYHGEVPVSLARAQGSVAFDYRKRKHV K A A A R A 4 1 0 0 0 0 1 2 1 0 1 0 0 0 2 2 0 0 1 3 0 0 18 0 1779.9268 O15020 O15020 2263 2280 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 0.00055398 63.662 By MS/MS By MS/MS 1 0 2 1 1 5384300 0 5384300 0 147 160 150 556;557 464;465 465 2 0 2631800 0 AASDIAMTELPPTHPIR NDRKEAAENSLVAYKAASDIAMTELPPTHP SDIAMTELPPTHPIRLGLALNFSVFYYEIL K A A I R L 3 1 0 1 0 0 1 0 1 2 1 0 1 0 3 1 2 0 0 0 0 0 17 0 1818.9298 P62258 P62258 154 170 YWHAE 14-3-3 protein epsilon yes yes 2;3 1.2253E-19 191.79 By MS/MS By MS/MS 6 0 3 1 2 53004000 0 13211000 39792000 148 1011 151 558;559;560 466;467;468;469;470 467 5 0 4573300 5953400 AASIFGGAKPVDTAAR PKEDDSSASTSQSTRAASIFGGAKPVDTAA ASIFGGAKPVDTAAREREVEERLQKEQEKL R A A A R E 5 1 0 1 0 0 0 2 0 1 0 1 0 1 1 1 1 0 0 1 0 0 16 1 1530.8154 P23588 P23588 357 372 EIF4B Eukaryotic translation initiation factor 4B yes yes 2;3 0.00026843 126.1 By matching By MS/MS By MS/MS 3.5 0.957 1 2 2 1 1 3 2 56294000 3483800 34401000 18409000 149 646 152 561;562;563;564;565;566 471;472 472 2 4197500 12785000 3385400 AASITSEVFNK TIAVKEDGELNLMKKAASITSEVFNKFFKE LMKKAASITSEVFNKFFKERVMEIVDADEK K A A N K F 2 0 1 0 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1165.5979 Q9Y5B9 Q9Y5B9 186 196 SUPT16H FACT complex subunit SPT16 yes yes 2 7.6965E-05 142.04 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 75620000 0 36447000 39173000 150 2296 153 567;568;569 473;474 473 2 0 16643000 8852300 AASSAAQGAFQGN EEFSQGIFSSRTFHRAASSAAQGAFQGN__ HRAASSAAQGAFQGN_______________ R A A G N - 5 0 1 0 0 2 0 2 0 0 0 0 0 1 0 2 0 0 0 0 0 0 13 0 1178.5316 O15127 O15127 317 329 SCAMP2 Secretory carrier-associated membrane protein 2 yes yes 2 0.0024231 107.56 By MS/MS 6 0 1 1 5953400 5953400 0 0 151 166 154 570 475 475 1 7927000 0 0 AASSLLANLWQYNK IKKKRDSPDSEKSSRAASSLLANLWQYNKL RAASSLLANLWQYNKLHRDFRAKGYRKEDF R A A N K L 3 0 2 0 0 1 0 0 0 0 3 1 0 0 0 2 0 1 1 0 0 0 14 0 1577.8202 Q9Y446 Q9Y446 766 779 PKP3 Plakophilin-3 yes yes 2 0.00028598 150.08 By MS/MS By MS/MS 3.8 1.72 1 2 1 1 2 3 29022000 0 6242000 22780000 152 2282 155 571;572;573;574;575 476;477;478;479;480 478 5 0 2734000 4196100 AASSQTPTMCTTTVTVK VILQVGVINEAQFSKAASSQTPTMCTTTVT SSQTPTMCTTTVTVKIIDSDEGPECHPPVK K A A V K I 2 0 0 0 1 1 0 0 0 0 0 1 1 0 1 2 6 0 0 2 0 0 17 0 1782.8492 Q08554 Q08554 445 461 DSC1 Desmocollin-1 yes yes 2 0.0031844 80.69 By MS/MS 10 0 1 1 1220700 1220700 0 0 153 1185 156 576 481 481 1 2223800 0 0 AASYTEEDENHTAK VALNEEFLRNYFTDKAASYTEEDENHTAKD KAASYTEEDENHTAKDCLLVYSQEETESLN K A A A K D 3 0 1 1 0 0 3 0 1 0 0 1 0 0 0 1 2 0 1 0 0 0 14 0 1564.6641 Q14126 Q14126 780 793 DSG2 Desmoglein-2 yes yes 3 0.0075279 66.285 By matching By MS/MS 2.5 0.5 1 1 1 1 2067500 0 426990 1640500 154 1282 157 577;578 482 482 1 0 192280 318190 AATAAADFTAK KGAVWGATLNKDATKAATAAADFTAKVWDA DATKAATAAADFTAKVWDAVSGDELMTLAH K A A A K V 6 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 11 0 1036.5189 Q9Y3F4 Q9Y3F4 74 84 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 0.0015589 99.257 By MS/MS By matching 5.25 0.829 1 1 2 3 1 26678000 0 20887000 5791000 155 2275 158 579;580;581;582 483 483 0 0 6586700 866400 AATALLEAGLAR ______________________________ ______________________________ M A A A R V 5 1 0 0 0 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 12 0 1155.6612 Q8WUK0 Q8WUK0 2 13 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes yes 2 0.0031639 99.815 By matching By MS/MS 7 0 2 1 1 6673800 0 1850400 4823400 156 1674 159 583;584 484 484 1 0 1062500 855880 AATASAGAGGIDGKPR ______________________________ ATASAGAGGIDGKPRTSPKSVKFLFGGLAG M A A P R T 5 1 0 1 0 0 0 4 0 1 0 1 0 0 1 1 1 0 0 0 0 0 16 1 1398.7215 Q02978 Q02978 2 17 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 2 3.0179E-15 185.25 By MS/MS By MS/MS 6 0 2 1 1 24074000 0 7466500 16608000 157 1151 160 585;586 485;486 485 2 0 2584600 2484700 AATGYRDPATGDTIPLFQAMQK LVNEELRERLLKAERAATGYRDPATGDTIP PATGDTIPLFQAMQKQLIEKAEALRLLEVQ R A A Q K Q 4 1 0 2 0 2 0 2 0 1 1 1 1 1 2 0 3 0 1 0 0 0 22 1 2351.158 P58107 P58107 1974 1995 EPPK1 Epiplakin yes yes 3 0.0087566 43.841 By MS/MS 1 0 1 1 6870200 0 6870200 0 158 958 161 587 487 487 1 0 3358100 0 AATIPVSQISTIAGSK SKDSQAKKIKMDLQKAATIPVSQISTIAGS ATIPVSQISTIAGSKLKEIFDKIHSLLSGK K A A S K L 3 0 0 0 0 1 0 1 0 3 0 1 0 0 1 3 2 0 0 1 0 0 16 0 1542.8617 Q53GS7 Q53GS7 425 440 GLE1 Nucleoporin GLE1 yes yes 2 0.0014378 93.011 By MS/MS 3 0 1 1 7039000 0 0 7039000 159 1425 162 588 488 488 1 0 0 1365200 AATLAQELEK QVKKYHRLKEEASKRAATLAQELEKFNRDQ EASKRAATLAQELEKFNRDQKADQDRLDLE R A A E K F 3 0 0 0 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1072.5764 Q14683 Q14683 386 395 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.00032011 134.26 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 111830000 0 21997000 89834000 160 1312 163 589;590;591;592 489;490;491 491 3 0 9905500 19560000 AATLSTLAGQPLLER IRERFGPLVEQGQSRAATLSTLAGQPLLER AATLSTLAGQPLLERAEAWRQKLHGRLEEV R A A E R A 3 1 0 0 0 1 1 1 0 0 4 0 0 0 1 1 2 0 0 0 0 0 15 0 1539.8621 CON__Q03247 CON__Q03247 209 223 yes yes 2;3 9.7463E-08 171.67 By MS/MS By MS/MS By MS/MS 8 1.55 1 2 3 2 4 3 3 5 7 593950000 35872000 59834000 498250000 + 161 72 164 593;594;595;596;597;598;599;600;601;602;603;604;605;606;607 492;493;494;495;496;497;498;499;500;501;502;503;504;505;506;507;508 501 16 40020000 82781000 125040000 AATPTLTTFPTIR PGPCFGGRTLEEIWRAATPTLTTFPTIRVG WRAATPTLTTFPTIRVGSDVWGERSLAAAR R A A I R V 2 1 0 0 0 0 0 0 0 1 1 0 0 1 2 0 5 0 0 0 0 0 13 0 1388.7664 Q8N9Z2 Q8N9Z2 183 195 CCDC71L Coiled-coil domain-containing protein 71L yes yes 2 0.004414 102.06 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 12547000 0 2131500 10415000 162 1620 165 608;609;610;611 509;510 510 2 0 1223900 1668500 AATSPALFNR VVFTMNPSSEGLKDRAATSPALFNRCVLNW GLKDRAATSPALFNRCVLNWFGDWSTEALY R A A N R C 3 1 1 0 0 0 0 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 10 0 1046.5509 Q14204 Q14204 3079 3088 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0059335 95.909 By MS/MS 2 0.816 1 1 1 3 11900000 0 11900000 0 163 1292 166 612;613;614 511 511 1 0 5626400 0 AATTLDEKIEK SWALADVMSQLKKKRAATTLDEKIEKVRKK KKKRAATTLDEKIEKVRKKRKTEDKEAKSG R A A E K V 2 0 0 1 0 0 2 0 0 1 1 2 0 0 0 0 2 0 0 0 0 0 11 1 1217.6503 Q96GQ7 Q96GQ7 113 123 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2;3 0.033521 88.392 By MS/MS 1.5 0.5 2 2 4 11951000 0 11951000 0 164 1793 167 615;616;617;618 512;513 512 1 0 5479100 0 AAVAGEDGR KGFAFVQYVNERNARAAVAGEDGRMIAGQV NERNARAAVAGEDGRMIAGQVLDINLAAEP R A A G R M 3 1 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 9 0 844.40389 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 65 73 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 0.001423 104.75 By MS/MS 6 0 3 3 0 0 0 0 165 467 168 619;620;621 514;515;516 514 3 0 0 0 AAVATFLQSVQVPEFTPK NLFAQTYGLTGSQDRAAVATFLQSVQVPEF ATFLQSVQVPEFTPKSGVKIHVSDQELQSA R A A P K S 3 0 0 0 0 2 1 0 0 0 1 1 0 2 2 1 2 0 0 3 0 0 18 0 1932.0357 P22314 P22314 785 802 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2;3 1.4891E-08 128.54 By MS/MS 2 0 2 2 6396400 0 6396400 0 166 630 169 622;623 517;518 518 2 0 2880400 0 AAVAVVPLVSEDK PLSSSSVLQEPPAKKAAVAVVPLVSEDKSV KKAAVAVVPLVSEDKSVTVPEAENPRDSLV K A A D K S 3 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 4 0 0 13 0 1296.7289 O75152 O75152 700 712 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 0.0086596 90.142 By MS/MS 2 0.816 1 1 1 3 13749000 0 0 13749000 167 244 170 624;625;626 519 519 1 0 0 3033500 AAVDAGFVPNDMQVGQTGK YDLADQLHAAVGASRAAVDAGFVPNDMQVG AGFVPNDMQVGQTGKIVAPELYIAVGISGA R A A G K I 3 0 1 2 0 2 0 3 0 0 0 1 1 1 1 0 1 0 0 3 0 0 19 0 1903.9098 P13804 P13804 250 268 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes yes 2 0.0004752 89.231 By MS/MS 6 0 1 1 4110600 0 4110600 0 168 552 171 627 520 520 1 0 1423000 0 AAVEEGIVLGGGCALLR NEKKDRVTDALNATRAAVEEGIVLGGGCAL VEEGIVLGGGCALLRCIPALDSLTPANEDQ R A A L R C 3 1 0 0 1 0 2 4 0 1 3 0 0 0 0 0 0 0 0 2 0 0 17 0 1683.8978 P10809 P10809 430 446 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0087342 69.261 By MS/MS By matching 4 0 2 1 1 4136300 2007400 0 2128900 169 515 172 628;629 521 521 1 1566100 0 347720 AAVELEEPEDAR RKALEHVPNSVRLWKAAVELEEPEDARIML LWKAAVELEEPEDARIMLSRAVECCPTSVE K A A A R I 3 1 0 1 0 0 4 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1327.6256 O94906 O94906 409 420 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.0010417 117.7 By MS/MS 2 0 1 1 4864600 0 4864600 0 170 305 173 630 522 522 1 0 2190600 0 AAVENLPTFLVELSR PDRLELEAAQKFLERAAVENLPTFLVELSR AAVENLPTFLVELSRVLANPGNSQVARVAA R A A S R V 2 1 1 0 0 0 2 0 0 0 3 0 0 1 1 1 1 0 0 2 0 0 15 0 1657.9039 Q14974 Q14974 28 42 KPNB1 Importin subunit beta-1 yes yes 2;3 0.00028234 130.56 By MS/MS By MS/MS 2.17 0.687 1 3 2 2 4 56107000 0 23465000 32642000 171 1325 174 631;632;633;634;635;636 523;524;525;526;527 525 5 0 10567000 6440400 AAVEWFDGKDFQGSK KGDATVSYEDPPTAKAAVEWFDGKDFQGSK AAVEWFDGKDFQGSKLKVSLARKKPPMNSM K A A S K L 2 0 0 2 0 1 1 2 0 0 0 2 0 2 0 1 0 1 0 1 0 0 15 1 1683.7893 Q01844 Q01844 425 439 EWSR1 RNA-binding protein EWS yes yes 2 9.7852E-05 162.68 By MS/MS By MS/MS 4 1.91 2 1 1 1 1 1 5 47458000 0 3762200 43695000 172 1141 175 637;638;639;640;641;642 528;529;530 530 3 0 1694200 8075500 AAVGEEKDINTFVGTPVEK RKLTPSAGKAMHTPKAAVGEEKDINTFVGT EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ K A A E K L 2 0 1 1 0 0 3 2 0 1 0 2 0 1 1 0 2 0 0 3 0 0 19 1 2003.0211 P46013 P46013 1909 1927 MKI67 Antigen KI-67 yes yes 3 0.00028885 76.573 By MS/MS 1 0 1 1 14773000 0 0 14773000 173 821 176 643 531 531 1 0 0 3183100 AAVIGDVIR ITVEHLAIKCHWTQRAAVIGDVIRVYSGHQ CHWTQRAAVIGDVIRVYSGHQGRTIIFCET R A A I R V 2 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 2 0 0 9 0 912.53927 Q9NR30 Q9NR30 424 432 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.1437E-07 161.68 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 5 2 122240000 0 56488000 65754000 174 2038 177 644;645;646;647;648;649;650 532;533;534;535 535 4 0 24767000 13559000 AAVIGPDVFAK DPKANKGHSVEEALRAAVIGPDVFAKLLSA EALRAAVIGPDVFAKLLSAERAVTGYTDPY R A A A K L 3 0 0 1 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 11 0 1086.6073 P58107 P58107 670 680 EPPK1 Epiplakin yes yes 2 0.053687 72.928 By MS/MS 2 0.816 1 1 1 3 14067000 0 14067000 0 175 958 178 651;652;653 536 536 1 0 6701900 0 AAVKDVEEEKFPTQLSR GLLPPGMTIDLFRGKAAVKDVEEEKFPTQL VKDVEEEKFPTQLSRHIKFGQKSHVECARF K A A S R H 2 1 0 1 0 1 3 0 0 0 1 2 0 1 1 1 1 0 0 2 0 0 17 2 1946.0109 Q2TAY7 Q2TAY7 191 207 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 4 0.043952 35.872 By MS/MS 4 0 1 1 5045400 0 0 5045400 176 1407 179 654 537 537 0 0 0 824080 AAVLLEQER DHSLKEHELLEQQKRAAVLLEQERQQEIAK LEQQKRAAVLLEQERQQEIAKMGTPVPRPP R A A E R Q 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1027.5662 Q13435 Q13435 184 192 SF3B2 Splicing factor 3B subunit 2 yes yes 2 2.2628E-25 153.71 By MS/MS By MS/MS 2.67 0.943 2 1 1 2 15784000 0 13814000 1970000 177 1248 180 655;656;657 538;539 539 2 0 6220800 321770 AAVLQQVLER ______________________________ ______________________________ M A A E R T 2 1 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 10 0 1125.6506 P12270 P12270 2 11 TPR Nucleoprotein TPR yes yes 2 1.2062E-07 161.02 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 13141000 0 2122200 11018000 178 536 181 658;659;660 540;541 541 2 0 1031900 2374100 AAVMHDILDMMPEGIK VTKQRVESHFDLELRAAVMHDILDMMPEGI AVMHDILDMMPEGIKQNKARTILQHLSEAW R A A I K Q 2 0 0 2 0 0 1 1 1 2 1 1 3 0 1 0 0 0 0 1 0 0 16 0 1769.8514 Q6P2Q9 Q6P2Q9 687 702 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 3.891E-05 134.08 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 38946000 0 5551000 33395000 179 1490 182;183 661;662;663;664;665 542;543;544;545 545 639 4 0 2713200 7212500 AAVPSGASTGIYEALELR PTVEVDLFTSKGLFRAAVPSGASTGIYEAL PSGASTGIYEALELRDNDKTRYMGKGVSKA R A A L R D 4 1 0 0 0 0 2 2 0 1 2 0 0 0 1 2 1 0 1 1 0 0 18 0 1803.9367 P06733;P13929;P09104 P06733 33 50 ENO1;ENO3;ENO2 Alpha-enolase;Beta-enolase;Gamma-enolase yes no 2;3 1.9846E-16 177.81 By MS/MS By MS/MS By MS/MS 5.65 2.37 2 3 6 3 2 1 1 2 7 4 9 129990000 30475000 21782000 77731000 180 448 184 666;667;668;669;670;671;672;673;674;675;676;677;678;679;680;681;682;683;684;685 546;547;548;549;550;551;552;553;554;555;556;557;558;559;560;561;562 547 16 25232000 10117000 11918000 AAVQFLNNAWGIQK NKFLSLANKRLPVKRAAVQFLNNAWGIQKK RAAVQFLNNAWGIQKKQNAKRFKRRWMVRK R A A Q K K 3 0 2 0 0 2 0 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 14 0 1558.8256 Q9UMY1 Q9UMY1 224 237 NOL7 Nucleolar protein 7 yes yes 2 1.309E-18 195.7 By MS/MS By MS/MS 7 1 2 2 2 2 76282000 0 26449000 49834000 181 2200 185 686;687;688;689 563;564;565 565 3 0 9345000 7466500 AAVTMSVPGR ______________________________ ______________________________ M A A G R K 2 1 0 0 0 0 0 1 0 0 0 0 1 0 1 1 1 0 0 2 0 0 10 0 987.51715 Q7Z406 Q7Z406 2 11 MYH14 Myosin-14 yes yes 2 0.0043384 89.355 By MS/MS 1 0 1 1 4161500 0 4161500 0 182 1531 186 690 566 566 1 0 2034100 0 AAVTSLFAK LATTQTDTMLSAEEKAAVTSLFAKVKVDEV LSAEEKAAVTSLFAKVKVDEVGGEALGRLL K A A A K V 3 0 0 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 0 0 9 0 906.51747 CON__Q3SX09 CON__Q3SX09 64 72 yes yes 2 0.00040447 129.68 By MS/MS By MS/MS By MS/MS 9.5 0.5 2 2 1 2 1 239320000 49519000 81533000 108260000 + 183 82 187 691;692;693;694 567;568;569;570;571 568 5 90214000 333580000 34584000 AAVVENVVK ______________________________ ______________________________ M A A V K L 2 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 9 0 927.53893 Q92785 Q92785 2 10 DPF2 Zinc finger protein ubi-d4 yes yes 1;2 0.017916 58.782 By MS/MS 5.4 1.02 1 2 1 1 5 17354000 0 0 17354000 184 1722 188 695;696;697;698;699 572;573 573 1 0 0 2508800 AAVWEITGAEFSK NKIYYPDFIVPDPKKAAVWEITGAEFSKSE KKAAVWEITGAEFSKSEAHTADGISIRFPR K A A S K S 3 0 0 0 0 0 2 1 0 1 0 1 0 1 0 1 1 1 0 1 0 0 13 0 1407.7034 P49916 P49916 779 791 LIG3 DNA ligase 3 yes yes 2 8.3346E-05 154.35 By MS/MS By MS/MS 2 0 2 1 1 15116000 0 3116500 11999000 185 874 189 700;701 574;575 575 2 0 1403400 2711600 AAVYHHFISDGVR VIVPLKTGLQEVEVKAAVYHHFISDGVRKS VKAAVYHHFISDGVRKSLKVVPEGIRMNKT K A A V R K 2 1 0 1 0 0 0 1 2 1 0 0 0 1 0 1 0 0 1 2 0 0 13 0 1470.7368 P01024 P01024 914 926 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 0.01857 59.67 By MS/MS 9 0 1 1 15998000 15998000 0 0 186 371 190 702 576 576 1 8979600 0 0 AAYEAELGDAR TESEEVVSREVSGIKAAYEAELGDARKTLD SGIKAAYEAELGDARKTLDSVAKERARLQL K A A A R K 4 1 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 11 0 1164.5411 P02545 P02545 79 89 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 4.6181E-07 156.46 By matching By MS/MS By MS/MS 4.38 1.41 3 2 1 1 1 1 2 5 396220000 14370000 36867000 344980000 187 387 191 703;704;705;706;707;708;709;710 577;578;579;580;581;582 579 6 16579000 14991000 62654000 AAYEAELGDARK TESEEVVSREVSGIKAAYEAELGDARKTLD GIKAAYEAELGDARKTLDSVAKERARLQLE K A A R K T 4 1 0 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1292.6361 P02545 P02545 79 90 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 0.0082062 103.88 By matching By MS/MS By MS/MS 3.82 1.64 1 1 3 3 1 1 1 1 5 5 86890000 1085300 17831000 67974000 188 387 192 711;712;713;714;715;716;717;718;719;720;721 583;584;585;586;587 585 5 1085300 7046300 12747000 AAYFGIYDTAK YQGFNVSVQGIIIYRAAYFGIYDTAKGMLP IIYRAAYFGIYDTAKGMLPDPKNTHIVISW R A A A K G 3 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 2 0 0 0 11 0 1218.5921 P05141 P05141 189 199 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.00032805 128.36 By matching By MS/MS By MS/MS 7.62 1.65 3 2 1 2 1 3 4 188170000 2815000 36461000 148890000 189 427 193 722;723;724;725;726;727;728;729 588;589;590;591;592 590 5 3748300 21509000 36064000 AAYLNMSEDPSHPSMALNTR KLLEQALVIEEQLRRAAYLNMSEDPSHPSM MSEDPSHPSMALNTRFAEVECLAESHQHLS R A A T R F 3 1 2 1 0 0 1 0 1 0 2 0 2 0 2 3 1 0 1 0 0 0 20 0 2203.999 Q14839 Q14839 1802 1821 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2;3 1.0418E-85 246.5 By MS/MS By MS/MS 1.6 0.8 3 1 1 1 4 70627000 0 11595000 59032000 190 1321 194 730;731;732;733;734 593;594;595 595 3 0 5667200 12597000 AAYLQETGKPLDETLKK DILTKRNNAQRQQIKAAYLQETGKPLDETL YLQETGKPLDETLKKALTGHLEEVVLALLK K A A K K A 2 0 0 1 0 1 2 1 0 0 3 3 0 0 1 0 2 0 1 0 0 0 17 2 1904.0255 P04083 P04083 82 98 ANXA1 Annexin A1 yes yes 3 0.002821 68.653 By MS/MS By MS/MS 6 0 2 1 1 17135000 0 8757700 8376800 191 410 195 735;736 596;597 596 2 0 3031600 1253300 ACPRPEGLNFQDLK NGLTVAQNQVLNLIKACPRPEGLNFQDLKN KACPRPEGLNFQDLKNQLKHMSVSSIKQAV K A C L K N 1 1 1 1 1 1 1 1 0 0 2 1 0 1 2 0 0 0 0 0 0 0 14 1 1643.809 P15927 P15927 218 231 RPA2 Replication protein A 32 kDa subunit yes yes 2 0.0033302 122.39 By MS/MS 5.5 0.5 1 1 2 8446900 0 0 8446900 192 573 196 737;738 598 598 1 0 0 1239300 ACQIFVR SFGGAGGHAPGVARKACQIFVRNLPFDFTW HAPGVARKACQIFVRNLPFDFTWKMLKDKF K A C V R N 1 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 892.45891 P52272 P52272 652 658 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 2.1547E-05 122.5 By MS/MS 3 0 1 1 0 0 0 0 193 902 197 739 599 599 1 0 0 0 ACQSIYPLHDVFVR VNKLIPDSIGKDIEKACQSIYPLHDVFVRK KACQSIYPLHDVFVRKVKMLKKPKFELGKL K A C V R K 1 1 0 1 1 1 0 0 1 1 1 0 0 1 1 1 0 0 1 2 0 0 14 0 1703.8454 P61247 P61247 200 213 RPS3A 40S ribosomal protein S3a yes yes 2;3 6.9435E-12 183.33 By MS/MS By MS/MS 6 0 3 2 1 54043000 0 13645000 40398000 194 988 198 740;741;742 600;601;602 602 3 0 4723300 6044000 ADAEVIILPK ______________________________ ______________________________ M A D P K K 2 0 0 1 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1067.6227 O60832 O60832 2 11 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.0020022 99.802 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 22190000 0 11134000 11056000 195 235 199 743;744;745 603;604;605 603 3 0 3695100 1926000 ADAFGDELFSVFEGDSTTAAGTK ______________________________ FSVFEGDSTTAAGTKKDKEKDKGKWKGPPG M A D T K K 4 0 0 3 0 0 2 3 0 0 1 1 0 3 0 2 3 0 0 1 0 0 23 0 2335.0492 P42285 P42285 2 24 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 2.0294E-53 212.39 By MS/MS 1.5 0.5 1 1 2 19587000 0 0 19587000 196 800 200 746;747 606 606 1 0 0 4419700 ADAFGDELFSVFEGDSTTAAGTKK ______________________________ SVFEGDSTTAAGTKKDKEKDKGKWKGPPGS M A D K K D 4 0 0 3 0 0 2 3 0 0 1 2 0 3 0 2 3 0 0 1 0 0 24 1 2463.1442 P42285 P42285 2 25 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.0041725 41.76 By MS/MS 2 0 1 1 422800 0 422800 0 197 800 201 748 607 607 1 0 190390 0 ADDGFHLLLMTPK VQHEARLSMMLLDSRADDGFHLLLMTPKPM SRADDGFHLLLMTPKPMIRAFDHVLHLRPL R A D P K P 1 0 0 2 0 0 0 1 1 0 3 1 1 1 1 0 1 0 0 0 0 0 13 0 1456.7384 Q9H6R4 Q9H6R4 452 464 NOL6 Nucleolar protein 6 yes yes 3 0.037476 49.269 By MS/MS 2 0 1 1 5229600 0 0 5229600 198 1988 202 749 608 608 1 0 0 1181800 ADDIDIEAMLEAPYKK ______________________________ DDIDIEAMLEAPYKKDENKLSSANGHEERS M A D K K D 3 0 0 3 0 0 2 0 0 2 1 2 1 0 1 0 0 0 1 0 0 0 16 1 1820.8866 Q14498 Q14498 2 17 RBM39 RNA-binding protein 39 yes yes 2 0.003736 74.46 By MS/MS 3 0 1 1 2812700 0 0 2812700 199 1302 203 750 609 609 1 0 0 545530 ADDKETCFAEEGK AVMDDFAAFVEKCCKADDKETCFAEEGKKL CKADDKETCFAEEGKKLVAASQAALGL___ K A D G K K 2 0 0 2 1 0 3 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 13 1 1498.6246 CON__P02768-1;P02768 CON__P02768-1 585 597 ALB Serum albumin yes no 2;3 2.7237E-33 213.73 By MS/MS 9 0 2 2 30020000 30020000 0 0 + 200 44 204 751;752 610;611;612 612 3 16850000 0 0 ADDKETCFAEEGKK AVMDDFAAFVEKCCKADDKETCFAEEGKKL KADDKETCFAEEGKKLVAASQAALGL____ K A D K K L 2 0 0 2 1 0 3 1 0 0 0 3 0 1 0 0 1 0 0 0 0 0 14 2 1626.7196 CON__P02768-1;P02768 CON__P02768-1 585 598 ALB Serum albumin yes no 3 1.1936E-74 188.63 By MS/MS 5.4 2.06 1 1 1 1 1 5 8291900 8291900 0 0 + 201 44 205 753;754;755;756;757 613;614;615 615 3 7422800 0 0 ADDLLPLGDQTQDGDFGSR RVKKIRKKEKEVVVRADDLLPLGDQTQDGD LPLGDQTQDGDFGSRLRGRGRRRVSEVEEE R A D S R L 1 1 0 5 0 2 0 3 0 0 3 0 0 1 1 1 1 0 0 0 0 0 19 0 2018.9181 O43290 O43290 420 438 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 1.0505E-16 175.88 By MS/MS 2 0 1 1 10075000 0 0 10075000 202 193 206 758 616 616 1 0 0 2276800 ADDPSSYMEVVQAANTSGNWEELVK LQKGMVKEAIDSYIKADDPSSYMEVVQAAN VQAANTSGNWEELVKYLQMARKKARESYVE K A D V K Y 3 0 2 2 0 1 3 1 0 0 1 1 1 0 1 3 1 1 1 3 0 0 25 0 2739.2334 Q00610 Q00610 1131 1155 CLTC Clathrin heavy chain 1 yes yes 3 4.629E-25 125.37 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 31678000 0 3313500 28365000 203 1125 207 759;760;761;762 617;618;619;620 619 4 0 1550600 6165200 ADDVDQQQTTNTVEEPLDLIR ______________________________ QQTTNTVEEPLDLIRLSLDERIYVKMRNDR M A D I R L 1 1 1 4 0 3 2 0 0 1 2 0 0 0 1 0 3 0 0 2 0 0 21 0 2399.1452 P62310 P62310 2 22 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2;3 2.3482E-86 246.5 By MS/MS 8.67 0.471 1 2 3 24344000 0 0 24344000 204 1020 208 763;764;765 621;622;623 622 3 0 0 7564000 ADEGISFR SDPKRTIAQDYGVLKADEGISFRGLFIIDD QDYGVLKADEGISFRGLFIIDDKGILRQIT K A D F R G 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 893.4243 Q06830 Q06830 121 128 PRDX1 Peroxiredoxin-1 yes yes 2 0.00087421 123.69 By MS/MS By matching By MS/MS 7.25 0.433 3 1 1 1 2 60042000 0 9787200 50255000 205 1173 209 766;767;768;769 624;625 625 2 0 5619900 8896600 ADEVLEILK QLSRFYDDAIVSQKKADEVLEILKTASDDR IVSQKKADEVLEILKTASDDRECENQLVLL K A D L K T 1 0 0 1 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 1028.5754 O75643 O75643 286 294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.022987 88.948 By MS/MS 1 0 1 1 0 0 0 0 206 277 210 770 626 626 1 0 0 0 ADEWLMK ADFCIIHYAGKVDYKADEWLMKNMDPLNDN YAGKVDYKADEWLMKNMDPLNDNIATLLHQ K A D M K N 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 0 0 0 7 0 891.41604 P35579;P35580 P35579 581 587 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.024814 97.071 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 3 1 57687000 392230 42372000 14922000 207 752;753 211 771;772;773;774;775 627;628 627 2 392230 20597000 3215300 ADFDDRVSDEEKVR ______________________________ MADFDDRVSDEEKVRIAAKFITHAPPGEFN M A D V R I 1 2 0 4 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 2 0 0 14 2 1679.7751 P52907 P52907 2 15 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 9.8907E-07 98.439 By MS/MS 6 0 1 1 0 0 0 0 208 914 212 776 629 629 1 0 0 0 ADFQGISPER ILAVCLRIQINPQNKADFQGISPERAFADF NPQNKADFQGISPERAFADFLFASTILHLV K A D E R A 1 1 0 1 0 1 1 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 10 0 1118.5356 P61803 P61803 83 92 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 2 0.00044539 117.89 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 29062000 0 3464700 25597000 209 998 213 777;778;779 630;631;632 632 3 0 17529000 45052000 ADGELNVDSLITR ______________________________ ______________________________ M A D T R L 1 1 1 2 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 13 0 1401.71 P62140 P62140 2 14 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 2 4.5145E-08 172.21 By MS/MS By MS/MS 6 0 2 1 1 14026000 0 2646900 11379000 210 1007 214 780;781 633;634 634 1 0 916280 1702400 ADGQVAELLLR ______________________________ ______________________________ M A D L R R 2 1 0 1 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 11 0 1183.6561 Q9Y285 Q9Y285 2 12 FARSA Phenylalanine--tRNA ligase alpha subunit yes yes 2 2.8791E-14 182.92 By MS/MS By MS/MS 4 0 2 1 1 16356000 0 11346000 5009900 211 2238 215 782;783 635;636 635 2 0 3765300 818280 ADGYEPPVQESV SGKATGDETGAKVERADGYEPPVQESV___ VERADGYEPPVQESV_______________ R A D S V - 1 0 0 1 0 1 2 1 0 0 0 0 0 0 2 1 0 0 1 2 0 0 12 0 1289.5776 P61247 P61247 253 264 RPS3A 40S ribosomal protein S3a yes yes 2 0.0046153 104.05 By MS/MS By MS/MS By MS/MS 6.33 0.471 4 2 1 3 2 192350000 37314000 60703000 94334000 212 988 216 784;785;786;787;788;789 637;638;639;640;641 637 5 49684000 22508000 14282000 ADGYNQPDSK GSRGNRGGNVGGKRKADGYNQPDSKRRQTN GGKRKADGYNQPDSKRRQTNNQQNWGSQPI K A D S K R 1 0 1 2 0 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 10 0 1093.4676 O43390;O60506 O43390 575 584 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 0.040131 75.378 By MS/MS 3 0 1 1 1568200 0 1568200 0 213 195;227 217 790 642 642 1 0 668520 0 ADHNPDSDSTPR ______________________________ ______________________________ M A D P R T 1 1 1 3 0 0 0 0 1 0 0 0 0 0 2 2 1 0 0 0 0 0 12 0 1310.5487 Q96BT3 Q96BT3 2 13 CENPT Centromere protein T yes yes 2 0.0061195 90.15 By MS/MS 3 0 1 1 1622100 0 0 1622100 214 1756 218 791 643 643 1 0 0 314620 ADHPFLFVIR SNIVEKQLPQSTLFRADHPFLFVIRKDDII STLFRADHPFLFVIRKDDIILFSGKVSCP_ R A D I R K 1 1 0 1 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1213.6608 O75635 O75635 357 366 SERPINB7 Serpin B7 yes yes 3 0.004416 80.688 By MS/MS 7.5 1.71 1 1 1 1 1 1 6 4833900 4833900 0 0 215 276 219 792;793;794;795;796;797 644 644 1 5076200 0 0 ADHPPAEVTSHAASGAK HTDSLRNSSTEIRHRADHPPAEVTSHAASG HPPAEVTSHAASGAKADQEEQIHPRSRLRS R A D A K A 5 0 0 1 0 0 1 1 2 0 0 1 0 0 2 2 1 0 0 1 0 0 17 0 1644.7856 Q9UHB6 Q9UHB6 101 117 LIMA1 LIM domain and actin-binding protein 1 yes yes 3;4 0.017366 46.249 By MS/MS 1.67 0.471 1 2 3 2851400 0 0 2851400 216 2150 220 798;799;800 645;646 645 2 0 0 639480 ADHQPLTEASYVNLPTIALCNTDSPLR AAFREPRLLVVTDPRADHQPLTEASYVNLP NLPTIALCNTDSPLRYVDIAIPCNNKGAHS R A D L R Y 3 1 2 2 1 1 1 0 1 1 4 0 0 0 3 2 3 0 1 1 0 0 27 0 2995.4709 P08865 P08865 129 155 RPSA 40S ribosomal protein SA yes yes 3 8.9763E-08 67.848 By MS/MS By matching 6 0 2 1 1 14283000 0 4141200 10141000 217 480 221 801;802 647 647 1 0 1433500 1517300 ADHSFSDGVPSDSVEAAK ______________________________ SFSDGVPSDSVEAAKNASNTEKLTDQVMQN M A D A K N 3 0 0 3 0 0 1 1 1 0 0 1 0 1 1 4 0 0 0 2 0 0 18 0 1817.8068 Q99733 Q99733 2 19 NAP1L4 Nucleosome assembly protein 1-like 4 yes yes 2 6.2356E-65 232.37 By MS/MS 5.5 1.12 1 1 1 1 4 31578000 0 0 31578000 218 1862 222 803;804;805;806 648;649 648 2 0 0 5028500 ADIEMPFDPSK NILFEEVHIPGSPFKADIEMPFDPSKVVAS SPFKADIEMPFDPSKVVASGPGLEHGKVGE K A D S K V 1 0 0 2 0 0 1 0 0 1 0 1 1 1 2 1 0 0 0 0 0 0 11 0 1248.5696 O75369 O75369 1125 1135 FLNB Filamin-B yes yes 2 0.062447 60.899 By MS/MS 1 0 1 1 2018600 0 2018600 0 219 254 223 807 650 650 0 0 986680 0 ADIEVACYGYEGIDAVK NNINRRLTPQAVKIRADIEVACYGYEGIDA IEVACYGYEGIDAVKEALRAGLNCSTENMP R A D V K E 3 0 0 2 1 0 2 2 0 2 0 1 0 0 0 0 0 0 2 2 0 0 17 0 1871.8611 P05198 P05198 193 209 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.00083076 94.688 By MS/MS 6 0 1 1 6549400 0 0 6549400 220 428 224 808 651 651 1 0 0 979870 ADILEDKDGK KKLKEVFSMAGVVVRADILEDKDGKSRGIG GVVVRADILEDKDGKSRGIGTVTFEQSIEA R A D G K S 1 0 0 3 0 0 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1102.5506 P52272 P52272 233 242 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00029269 118.71 By MS/MS By MS/MS 4.33 1.63 1 3 1 1 2 1 5 4 204820000 0 44304000 160520000 221 902 225 809;810;811;812;813;814;815;816;817 652;653;654;655;656 654 5 0 17843000 30876000 ADILQVGLR YLNLEIKGTNGQVTRADILQVGLRELLNAL NGQVTRADILQVGLRELLNALFSNPMDDNL R A D L R E 1 1 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 983.57638 Q9H074 Q9H074 293 301 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes yes 2 0.0010401 109.86 By matching By MS/MS 4.33 0.471 2 1 1 2 23488000 2262400 21226000 0 222 1957 226 818;819;820 657 657 1 1765100 6143900 0 ADIQTER ______________________________ ______________________________ M A D E R A 1 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 7 0 831.40865 P62280 P62280 2 8 RPS11 40S ribosomal protein S11 yes yes 2 0.011712 97.602 By MS/MS By MS/MS 7 0 2 1 1 22874000 0 9750100 13124000 223 1017 227 821;822 658;659 658 2 0 5598600 2328700 ADISLDELIR ______________________________ ______________________________ M A D I R K 1 1 0 2 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1143.6136 Q9BY77 Q9BY77 2 11 POLDIP3 Polymerase delta-interacting protein 3 yes yes 2 0.002703 96.668 By matching By MS/MS 3.67 0.471 1 2 2 1 4467700 2578500 0 1889100 224 1933 228 823;824;825 660 660 1 2821400 0 308550 ADKDYHFKVDNDENEHQLSLR SPLRPQNYLFGCELKADKDYHFKVDNDENE FKVDNDENEHQLSLRTVSLGAGAKDELHIV K A D L R T 1 1 2 4 0 1 2 0 2 0 2 2 0 1 0 1 0 0 1 1 0 0 21 2 2572.1942 P06748 P06748 25 45 NPM1 Nucleophosmin yes yes 4;5 6.5726E-29 190.83 By MS/MS By MS/MS 6.64 1.23 2 4 2 2 1 2 9 335820000 0 85426000 250390000 225 449 229 826;827;828;829;830;831;832;833;834;835;836 661;662;663;664;665;666;667;668;669 661 9 0 29572000 37911000 ADKEAAFDDAVEER ______________________________ MADKEAAFDDAVEERVINEEYKIWKKNTPF M A D E R V 4 1 0 3 0 0 3 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 14 1 1564.7005 Q09028 Q09028 2 15 RBBP4 Histone-binding protein RBBP4 yes yes 2 4.5362E-08 172.09 By MS/MS By MS/MS 4.12 1.9 1 1 1 1 2 1 1 2 6 216240000 0 19205000 197030000 226 1188 230 837;838;839;840;841;842;843;844 670;671;672;673;674;675;676 674 6 0 5349200 30404000 ADKMDMSLDDIIK ______________________________ ______________________________ M A D I K L 1 0 0 4 0 0 0 0 0 2 1 2 2 0 0 1 0 0 0 0 0 0 13 1 1493.7106 Q86V81 Q86V81 2 14 ALYREF THO complex subunit 4 yes yes 2 4.3909E-06 162.68 By MS/MS By MS/MS 6.33 0.471 6 3 5 4 109290000 0 40644000 68650000 227 1551 231;232;233 845;846;847;848;849;850;851;852;853 677;678;679;680;681;682;683;684 681 647;648 8 0 14953000 10474000 ADLATAPPHVTVVR VVDLEGSLKVVYPSKADLATAPPHVTVVR_ KADLATAPPHVTVVR_______________ K A D V R - 3 1 0 1 0 0 0 0 1 0 1 0 0 0 2 0 2 0 0 3 0 0 14 0 1445.7991 Q8N1G4 Q8N1G4 570 583 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 0.00090772 110.84 By MS/MS By MS/MS 3 0 2 1 1 25753000 0 18020000 7732400 228 1600 234 854;855 685;686 686 2 0 7682000 1499700 ADLDKLNIDSIIQR ______________________________ MADLDKLNIDSIIQRLLEVRGSKPGKNVQL M A D Q R L 1 1 1 3 0 1 0 0 0 3 2 1 0 0 0 1 0 0 0 0 0 0 14 1 1612.8784 P36873 P36873 2 15 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes yes 2;3 3.0468E-18 194.39 By MS/MS By MS/MS 6 0 4 2 2 50608000 0 13553000 37055000 229 763 235 856;857;858;859 687;688;689 689 3 0 4691700 5543800 ADLEEQLSDEEKVR ______________________________ MADLEEQLSDEEKVRIAAKFIIHAPPGEFN M A D V R I 1 1 0 2 0 1 4 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 14 1 1659.7952 P47755 P47755 2 15 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 2 0.00016085 147.37 By MS/MS 6 0 1 1 3696200 0 3696200 0 230 836 236 860 690 690 1 0 1279500 0 ADLEMQIENLK INGLRRVLDELTLARADLEMQIENLKEELA TLARADLEMQIENLKEELAYLKKNHEEEMN R A D L K E 1 0 1 1 0 1 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1302.649 Q04695;CON__Q04695 Q04695 202 212 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.00029384 133.32 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 63802000 4270800 0 59532000 + 231 73 237 861;862;863 691;692;693 693 3 3421500 0 8654300 ADLEMQIENLKEELAYLK INGLRRVLDELTLARADLEMQIENLKEELA EMQIENLKEELAYLKKNHEEEMNALRGQVG R A D L K K 2 0 1 1 0 1 4 0 0 1 4 2 1 0 0 0 0 0 1 0 0 0 18 1 2149.0977 Q04695;CON__Q04695 Q04695 202 219 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 1.5727E-21 185.87 By MS/MS 3.2 0.748 1 2 2 5 84956000 0 0 84956000 + 232 73 238 864;865;866;867;868 694;695;696;697;698 698 5 0 0 14490000 ADLEMQIENLKEELAYLKK INGLRRVLDELTLARADLEMQIENLKEELA MQIENLKEELAYLKKNHEEEMNALRGQVGG R A D K K N 2 0 1 1 0 1 4 0 0 1 4 3 1 0 0 0 0 0 1 0 0 0 19 2 2277.1926 Q04695;CON__Q04695 Q04695 202 220 KRT17 Keratin, type I cytoskeletal 17 no no 2;3;4 3.4873E-09 146 By MS/MS By MS/MS By MS/MS 4.57 1.76 1 1 1 3 5 1 1 1 1 2 11 79523000 2939700 9959100 66625000 + 233 73 239 869;870;871;872;873;874;875;876;877;878;879;880;881;882 699;700;701;702;703;704;705;706 701 8 2523800 2567100 10178000 ADLEMQIESLKEELAYLK INGLRRVLDELTLARADLEMQIESLKEELA EMQIESLKEELAYLKKNHEEEMNALRGQVG R A D L K K 2 0 0 1 0 1 4 0 0 1 4 2 1 0 0 1 0 0 1 0 0 0 18 1 2122.0868 CON__P02533;P02533 CON__P02533 233 250 KRT14 Keratin, type I cytoskeletal 14 yes no 3 2.1991E-06 107.75 By MS/MS By MS/MS 5.6 2.06 1 1 1 2 2 3 38366000 5007600 0 33358000 + 234 35 240 883;884;885;886;887 707;708;709;710;711 707 5 4164700 0 5675500 ADLEMQIESLKEELAYLKK INGLRRVLDELTLARADLEMQIESLKEELA MQIESLKEELAYLKKNHEEEMNALRGQVGG R A D K K N 2 0 0 1 0 1 4 0 0 1 4 3 1 0 0 1 0 0 1 0 0 0 19 2 2250.1817 CON__P02533;P02533 CON__P02533 233 251 KRT14 Keratin, type I cytoskeletal 14 yes no 3;4 0.00020502 81.723 By MS/MS By MS/MS 4.75 3.77 2 1 1 2 2 16963000 8023900 0 8939300 + 235 35 241 888;889;890;891 712;713;714 712 3 6562900 0 1926100 ADLEMQIESLTEELAYLK INGLRRVLDELTLTKADLEMQIESLTEELA EMQIESLTEELAYLKKNHEEEMKDLRNVST K A D L K K 2 0 0 1 0 1 4 0 0 1 4 1 1 0 0 1 1 0 1 0 0 0 18 0 2095.0395 P13645;CON__P13645 P13645 267 284 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 8.6887E-17 182.02 By MS/MS By MS/MS By MS/MS 3.95 2.31 6 7 5 9 8 3 3 15 4 22 732070000 24865000 1164000 706040000 + 236 56 242;243 892;893;894;895;896;897;898;899;900;901;902;903;904;905;906;907;908;909;910;911;912;913;914;915;916;917;918;919;920;921;922;923;924;925;926;927;928;929;930;931;932 715;716;717;718;719;720;721;722;723;724;725;726;727;728;729;730;731;732;733;734;735;736;737;738;739;740;741;742;743;744;745;746;747;748;749;750;751;752;753;754 718 40 40 19718000 552440 152760000 ADLEMQIESLTEELAYLKK INGLRRVLDELTLTKADLEMQIESLTEELA MQIESLTEELAYLKKNHEEEMKDLRNVSTG K A D K K N 2 0 0 1 0 1 4 0 0 1 4 2 1 0 0 1 1 0 1 0 0 0 19 1 2223.1345 P13645;CON__P13645 P13645 267 285 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3;4 1.8359E-30 196.93 By MS/MS By MS/MS By MS/MS 4.61 2.65 8 5 7 9 4 3 2 9 4 22 5 24 994630000 207410000 12082000 775140000 + 237 56 244;245 933;934;935;936;937;938;939;940;941;942;943;944;945;946;947;948;949;950;951;952;953;954;955;956;957;958;959;960;961;962;963;964;965;966;967;968;969;970;971;972;973;974;975;976;977;978;979;980;981;982;983 755;756;757;758;759;760;761;762;763;764;765;766;767;768;769;770;771;772;773;774;775;776;777;778;779;780;781;782;783;784;785;786;787;788;789;790;791;792;793;794;795;796;797;798;799;800;801 758 40 47 166420000 5363100 151450000 ADLFPILMR FSISEDNAVVKTAHRADLFPILMRILYGRM VKTAHRADLFPILMRILYGRMKNKTGSKTQ R A D M R I 1 1 0 1 0 0 0 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 9 0 1074.5896 O75691 O75691 1006 1014 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0098096 88.942 By MS/MS By MS/MS 1 0 2 1 1 7556900 0 2972700 4584200 238 280 246 984;985 802;803 802 2 0 1453000 987740 ADLIAYLK GTKMIFVGIKKKEERADLIAYLKKATNE__ IKKKEERADLIAYLKKATNE__________ R A D L K K 2 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 8 0 905.52222 P99999 P99999 93 100 CYCS Cytochrome c yes yes 2 0.026209 79.469 By MS/MS 9 0 1 1 16463000 0 0 16463000 239 1119 247 986 804 804 1 0 0 5258900 ADLINNLGTIAK ERTLTLVDTGIGMTKADLINNLGTIAKSGT MTKADLINNLGTIAKSGTKAFMEALQAGAD K A D A K S 2 0 2 1 0 0 0 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1241.698 P07900;Q14568;P08238;Q58FF8 P08238 96 107 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 9.7605E-05 140.16 By MS/MS By MS/MS By MS/MS 5.43 3.16 1 2 3 1 1 1 1 2 2 7 4 3 212180000 50058000 85546000 76580000 240 466;469;1431 248 987;988;989;990;991;992;993;994;995;996;997;998;999;1000 805;806;807;808;809;810;811 806 7 58359000 78672000 47183000 ADLNIILSSPEQLELFLLAQQK VSKATLQEILPEVLKADLNIILSSPEQLEL SSPEQLELFLLAQQKVPSKLKKLVGSVNLF K A D Q K V 2 0 1 1 0 3 2 0 0 2 6 1 0 1 1 2 0 0 0 0 0 0 22 0 2482.3683 Q9BQG0 Q9BQG0 203 224 MYBBP1A Myb-binding protein 1A yes yes 3 0.00058241 64.295 By MS/MS 1.5 0.5 1 1 2 6111900 0 0 6111900 241 1885 249 1001;1002 812 812 1 0 0 1358900 ADLNQGIGEPQSPSR LGSADCELSAKLLRRADLNQGIGEPQSPSR ADLNQGIGEPQSPSRRVFNPYTEFKEFSRK R A D S R R 1 1 1 1 0 2 1 2 0 1 1 0 0 0 2 2 0 0 0 0 0 0 15 0 1567.759 Q96C19 Q96C19 63 77 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.00034006 140.09 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 40784000 0 13478000 27306000 242 1757 250 1003;1004;1005;1006 813;814;815 813 3 0 5188300 4181700 ADLSGIASGGR YLRALGLKDIFDESKADLSGIASGGRLYIS DESKADLSGIASGGRLYISRMMHKSYIEVT K A D G R L 2 1 0 1 0 0 0 3 0 1 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1002.5094 O75635 O75635 305 315 SERPINB7 Serpin B7 yes yes 2 0.010262 90.696 By MS/MS By matching 9.67 0.471 1 2 2 1 15465000 10677000 0 4787700 243 276 251 1007;1008;1009 816 816 1 13789000 0 10471000 ADLSGITGAR DILLQLGIEEAFTSKADLSGITGARNLAVS AFTSKADLSGITGARNLAVSQVVHKAVLDV K A D A R N 2 1 0 1 0 0 0 2 0 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 959.50361 P01011 P01011 341 350 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 0.047245 71.425 By MS/MS 9 0 1 1 0 0 0 0 244 368 252 1010 817 817 1 0 0 0 ADLSGITK SVLGDVGITEVFSDRADLSGITKEQPLKVS TEVFSDRADLSGITKEQPLKVSKALHKAAL R A D T K E 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 0 0 0 8 0 803.43888 CON__P34955 CON__P34955 338 345 yes yes 2 0.0096971 94.114 By MS/MS By MS/MS 5.5 1.5 1 1 1 1 13111000 7730300 5380900 0 + 245 64 253 1011;1012 818;819 818 2 16660000 1785700 0 ADLSLADALTEPSPDIEGEIKR ______________________________ ALTEPSPDIEGEIKRDFIATLEAEAFDDVV M A D K R D 3 1 0 3 0 0 3 1 0 2 3 1 0 0 2 2 1 0 0 0 0 0 22 1 2339.1856 P27816 P27816 2 23 MAP4 Microtubule-associated protein 4 yes yes 2;3 5.9971E-20 144.12 By MS/MS 1.33 0.471 2 1 3 11951000 0 0 11951000 246 683 254 1013;1014;1015 820;821 821 2 0 0 2597200 ADLTALFLPR SGKVKRDAEKKDQMKADLTALFLPRQPPMS KDQMKADLTALFLPRQPPMSLAEAEQLMEE K A D P R Q 2 1 0 1 0 0 0 0 0 0 3 0 0 1 1 0 1 0 0 0 0 0 10 0 1115.6339 Q13045 Q13045 875 884 FLII Protein flightless-1 homolog yes yes 2 7.2839E-11 167.33 By MS/MS 2 0 1 1 2659000 0 2659000 0 247 1216 255 1016 822 822 1 0 1197400 0 ADLTGISPSPNLYLSK ILQDMGITDIFDETRADLTGISPSPNLYLS DLTGISPSPNLYLSKIIHKTFVEVDENGTQ R A D S K I 1 0 1 1 0 0 0 1 0 1 3 1 0 0 2 3 1 0 1 0 0 0 16 0 1674.8829 Q96P63 Q96P63 328 343 SERPINB12 Serpin B12 yes yes 2 3.279E-05 143.42 By MS/MS By MS/MS 3.9 2.62 2 2 1 2 1 1 1 7 3 145620000 129770000 0 15843000 248 1816 256 1017;1018;1019;1020;1021;1022;1023;1024;1025;1026 823;824;825;826;827;828;829;830;831 823 9 114990000 0 3146300 ADMEDLMSSK LEAKEEFERQNKQLRADMEDLMSSKDDVGK NKQLRADMEDLMSSKDDVGKNVHELEKSKR R A D S K D 1 0 0 2 0 0 1 0 0 0 1 1 2 0 0 2 0 0 0 0 0 0 10 0 1125.4682 P35580 P35580 1511 1520 MYH10 Myosin-10 yes yes 2 0.0060728 95.608 By MS/MS By MS/MS 1 0 2 1 1 21552000 0 10950000 10602000 249 753 257 1027;1028 832;833 832 2 0 5352100 2284400 ADMEDLMSSKDDVGK LEAKEEFERQNKQLRADMEDLMSSKDDVGK ADMEDLMSSKDDVGKNVHELEKSKRALEQQ R A D G K N 1 0 0 4 0 0 1 1 0 0 1 2 2 0 0 2 0 0 0 1 0 0 15 1 1639.7069 P35580 P35580 1511 1525 MYH10 Myosin-10 yes yes 2;3 1.6352E-10 176.05 By MS/MS By MS/MS 1 0 4 3 1 32541000 0 23556000 8985000 250 753 258;259 1029;1030;1031;1032 834;835;836;837 836 366 4 0 11514000 1935900 ADPDVLTEVPAALKR ______________________________ ADPDVLTEVPAALKRLAKYVIRGFYGIEHA M A D K R L 3 1 0 2 0 0 1 0 0 0 2 1 0 0 2 0 1 0 0 2 0 0 15 1 1593.8726 P29083 P29083 2 16 GTF2E1 General transcription factor IIE subunit 1 yes yes 2 0.03791 54.143 By MS/MS 7 0 1 1 1120900 0 0 1120900 251 696 260 1033 838 838 1 0 0 198900 ADQDRLDLEER ATLAQELEKFNRDQKADQDRLDLEERKKVE RDQKADQDRLDLEERKKVETEAKIKQKLRE K A D E R K 1 2 0 3 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 1 1358.6426 Q14683 Q14683 402 412 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00027636 147.28 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 65980000 0 5629500 60351000 252 1312 261 1034;1035;1036;1037;1038 839;840;841;842;843 843 5 0 2535000 13152000 ADQEEQIHPR HPPAEVTSHAASGAKADQEEQIHPRSRLRS ASGAKADQEEQIHPRSRLRSPPEALVQGRY K A D P R S 1 1 0 1 0 2 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 10 0 1221.5738 Q9UHB6 Q9UHB6 118 127 LIMA1 LIM domain and actin-binding protein 1 yes yes 3 0.037931 52.725 By MS/MS By matching 2.5 0.5 1 1 1 1 5749700 0 3006100 2743500 253 2150 262 1039;1040 844 844 1 0 1353700 532110 ADQLDYENFR FLTILRATGFDGGNKADQLDYENFRHVVHK DGGNKADQLDYENFRHVVHKWHYKLTKASV K A D F R H 1 1 1 2 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 10 0 1269.5626 Q8NI27 Q8NI27 1085 1094 THOC2 THO complex subunit 2 yes yes 2 8.2354E-07 154.28 By MS/MS 1 0 1 1 9578500 0 0 9578500 254 1647 263 1041 845 845 1 0 0 2063800 ADQLTEEQIAEFK ______________________________ ______________________________ M A D F K E 2 0 0 1 0 2 3 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1520.7359 P0DP25;P0DP24;P0DP23 P0DP25 2 14 yes no 2 1.2996E-17 191.52 By MS/MS By MS/MS By MS/MS 8.8 1.17 1 1 1 2 2 1 2 35626000 11978000 558070 23090000 255 505 264 1042;1043;1044;1045;1046 846;847;848;849 846 4 9707700 2823400 6334500 ADRDESSPYAAMLAAQDVAQR GKETICRVTGGMKVKADRDESSPYAAMLAA SPYAAMLAAQDVAQRCKELGITALHIKLRA K A D Q R C 6 2 0 3 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 21 1 2264.0492 P62263 P62263 64 84 RPS14 40S ribosomal protein S14 yes yes 2;3 4.6916E-140 273.32 By MS/MS By MS/MS 7.67 0.471 2 4 1 5 193410000 0 5054400 188350000 256 1012 265;266 1047;1048;1049;1050;1051;1052 850;851;852;853;854 853 483 5 0 2299600 29372000 ADRDQYELLCLDNTR AFVKHSTIFENLANKADRDQYELLCLDNTR ADRDQYELLCLDNTRKPVDEYKDCHLAQVP K A D T R K 1 2 1 3 1 1 1 0 0 0 3 0 0 0 0 0 1 0 1 0 0 0 15 1 1880.8687 P02787 P02787 237 251 TF Serotransferrin yes yes 3 6.9293E-05 132.84 By MS/MS 9 0 1 1 15766000 15766000 0 0 257 399 267 1053 855 855 1 8849500 0 0 ADRETVAVKPTENNEEEFTSK LKELEELSLEAQGIKADRETVAVKPTENNE AVKPTENNEEEFTSKDKKKKGQKGKKQSFD K A D S K D 2 1 2 1 0 0 5 0 0 0 0 2 0 1 1 1 3 0 0 2 0 0 21 2 2393.1347 O60841 O60841 74 94 EIF5B Eukaryotic translation initiation factor 5B yes yes 3;4 8.5312E-12 119.5 By MS/MS 1 0 2 2 27928000 0 0 27928000 258 236 268 1054;1055 856;857 857 2 0 0 6017400 ADSELQLVEQR ______________________________ ______________________________ M A D Q R I 1 1 0 1 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1286.6466 P07741 P07741 2 12 APRT Adenine phosphoribosyltransferase yes yes 2 6.6809E-14 179.8 By MS/MS 7 0 1 1 4451900 0 0 4451900 259 464 269 1056 858 858 1 0 0 789970 ADSGLLLK ______________________________ ______________________________ M A D L K R 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 815.47527 Q5SY16 Q5SY16 2 9 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 1 0.027747 47.349 By MS/MS 3 0 1 1 9893300 0 0 9893300 260 1446 270 1057 859 859 0 0 0 1918800 ADSLLAVVK LDLASESTAHAQSSKADSLLAVVKREPAEQ HAQSSKADSLLAVVKREPAEQPGDGERTDC K A D V K R 2 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 914.54368 Q14151;Q15424 Q15424 286 294 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2 0.0015068 107.9 By MS/MS By MS/MS By MS/MS 2.62 0.992 1 3 2 2 1 3 4 148620000 13376000 39060000 96179000 261 1364;1285 271 1058;1059;1060;1061;1062;1063;1064;1065 860;861;862;863;864;865;866 865 7 16117000 17236000 21080000 ADSRDPASDQMQHWK ______________________________ ADSRDPASDQMQHWKEQRAAQKADVLTTGA M A D W K E 2 1 0 3 0 2 0 0 1 0 0 1 1 0 1 2 0 1 0 0 0 0 15 1 1770.7744 P04040 P04040 2 16 CAT Catalase yes yes 3 0.017714 52.522 By MS/MS 8.5 0.5 1 1 2 5718200 5718200 0 0 262 408 272 1066;1067 867 867 1 3899300 0 0 ADTLTDEINFLR DVDAAYMNKVELQAKADTLTDEINFLRALY QAKADTLTDEINFLRALYDAELSQMQTHIS K A D L R A 1 1 1 2 0 0 1 0 0 1 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1406.7042 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 288 299 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 2.5531E-58 232.83 By MS/MS By MS/MS By MS/MS 4.9 3.11 3 3 3 2 1 1 1 2 2 2 8 3 9 461260000 295350000 8374300 157530000 + 263 68;47;37 273 1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078;1079;1080;1081;1082;1083;1084;1085;1086;1087 868;869;870;871;872;873;874;875;876;877;878;879;880;881;882;883;884 871 17 246160000 3917800 31454000 ADTQTYQPYNK DFIDDLADLSCLVYRADTQTYQPYNKDWIK LVYRADTQTYQPYNKDWIKEKIYVLLRRQA R A D N K D 1 0 1 1 0 2 0 0 0 0 0 1 0 0 1 0 2 0 2 0 0 0 11 0 1327.6044 P84090 P84090 74 84 ERH Enhancer of rudimentary homolog yes yes 2 0.0040171 103.8 By MS/MS By MS/MS By matching 9.75 0.433 1 3 2 1 1 19777000 4097000 11659000 4021700 264 1110 274 1088;1089;1090;1091 885;886 886 2 4178800 58983000 8795900 ADTQTYQPYNKDWIK DFIDDLADLSCLVYRADTQTYQPYNKDWIK ADTQTYQPYNKDWIKEKIYVLLRRQAQQAG R A D I K E 1 0 1 2 0 2 0 0 0 1 0 2 0 0 1 0 2 1 2 0 0 0 15 1 1869.8897 P84090 P84090 74 88 ERH Enhancer of rudimentary homolog yes yes 2;3 3.5675E-05 163.51 By MS/MS By MS/MS 9.5 0.764 1 1 4 2 4 283390000 0 208130000 75266000 265 1110 275 1092;1093;1094;1095;1096;1097 887;888;889;890;891 891 5 0 1053000000 34567000 ADTTSTVTPVPGQEK CGEESSKAKEVTIAKADTTSTVTPVPGQEK ADTTSTVTPVPGQEKGSALEGRADTTTGSA K A D E K G 1 0 0 1 0 1 1 1 0 0 0 1 0 0 2 1 4 0 0 2 0 0 15 0 1529.7573 Q9H9B1 Q9H9B1 645 659 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes yes 2 0.050874 59.57 By MS/MS 2 0 1 1 2062100 0 2062100 0 266 1998 276 1098 892 892 1 0 928600 0 ADVDVQPYAFTTK YPNVGKSSFINKVTRADVDVQPYAFTTKSL TRADVDVQPYAFTTKSLFVGHMDYKYLRWQ R A D T K S 2 0 0 2 0 1 0 0 0 0 0 1 0 1 1 0 2 0 1 2 0 0 13 0 1453.7089 Q9BZE4 Q9BZE4 191 203 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.00037563 126.19 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 2 1 83287000 3601800 25692000 53993000 267 1941 277 1099;1100;1101;1102 893;894 893 2 4155700 10603000 10472000 ADVIQATGDAICIFR GVDPVEAFAQNVLSKADVIQATGDAICIFR ADVIQATGDAICIFRELQCLTPRGRYDIRI K A D F R E 3 1 0 2 1 1 0 1 0 3 0 0 0 1 0 0 1 0 0 1 0 0 15 0 1648.8243 Q08945 Q08945 189 203 SSRP1 FACT complex subunit SSRP1 yes yes 2;3 0.0002915 122.51 By MS/MS 5.33 1.7 1 1 1 3 10228000 0 0 10228000 268 1186 278 1103;1104;1105 895;896 896 2 0 0 1689200 ADVLDLHEAGGEDFAMDEDGDESIHK ______________________________ EDFAMDEDGDESIHKLKEKAKKRKGRGFGS M A D H K L 3 0 0 6 0 0 4 3 2 1 2 1 1 1 0 1 0 0 0 1 0 0 26 0 2814.1926 Q9Y5S9 Q9Y5S9 2 27 RBM8A RNA-binding protein 8A yes yes 3 2.3063E-25 124 By matching By MS/MS 7 0 2 1 1 21477000 0 2565900 18911000 269 2302 279 1106;1107 897 897 743 1 0 1473400 3355700 ADVLSVLR ______________________________ ______________________________ M A D L R Q 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 8 0 871.51272 Q6P1J9 Q6P1J9 2 9 CDC73 Parafibromin yes yes 2 0.0032326 98.997 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 2554500 0 2554500 0 270 1486 280 1108;1109;1110 898;899 898 2 0 872080 0 ADVLTTGAGNPVGDK SDQMQHWKEQRAAQKADVLTTGAGNPVGDK ADVLTTGAGNPVGDKLNVITVGPRGPLLVQ K A D D K L 2 0 1 2 0 0 0 3 0 0 1 1 0 0 1 0 2 0 0 2 0 0 15 0 1413.71 P04040 P04040 24 38 CAT Catalase yes yes 2 0.005166 83.226 By MS/MS By matching 6.5 3.95 2 1 1 2 4 2 23149000 13999000 0 9150000 271 408 281 1111;1112;1113;1114;1115;1116 900;901 900 2 12442000 0 4169000 ADVLTTGAGNPVGDKLNVITVGPR SDQMQHWKEQRAAQKADVLTTGAGNPVGDK NPVGDKLNVITVGPRGPLLVQDVVFTDEMA K A D P R G 2 1 2 2 0 0 0 4 0 1 2 1 0 0 2 0 3 0 0 4 0 0 24 1 2363.2809 P04040 P04040 24 47 CAT Catalase yes yes 3 2.8829E-22 153.77 By MS/MS 6.14 3.18 1 1 1 1 1 1 1 7 30794000 30794000 0 0 272 408 282 1117;1118;1119;1120;1121;1122;1123 902;903;904;905;906 902 4 36645000 0 0 ADVQSIIGLQR VGRMFKQFNKLTEDKADVQSIIGLQRFFET TEDKADVQSIIGLQRFFETRMNEAFGDTKF K A D Q R F 1 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1198.667 Q13263 Q13263 780 790 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.0059988 99.013 By matching By MS/MS 2.33 1.25 1 1 1 1 2 35601000 3179500 0 32421000 273 1235 283 1124;1125;1126 907 907 1 3179500 0 7199000 ADVVESWIGEK AKLDENSAFLQFNWKADVVESWIGEKENSL FNWKADVVESWIGEKENSLKTDDYGRDLSS K A D E K E 1 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 0 1 0 2 0 0 11 0 1231.6085 Q13813 Q13813 1985 1995 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.014549 87.258 By MS/MS By MS/MS 1 0 2 1 1 14528000 0 0 14528000 274 1268 284 1127;1128 908;909 909 2 0 0 3130200 ADVVESWIGEKENSLK AKLDENSAFLQFNWKADVVESWIGEKENSL DVVESWIGEKENSLKTDDYGRDLSSVQTLL K A D L K T 1 0 1 1 0 0 3 1 0 1 1 2 0 0 0 2 0 1 0 2 0 0 16 1 1802.905 Q13813 Q13813 1985 2000 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.7668E-07 167.71 By MS/MS By MS/MS 1 0 3 1 2 18536000 0 2992900 15543000 275 1268 285 1129;1130;1131 910;911;912 911 3 0 1462900 3348900 ADWWTNTAHYNR PTPIENMILRYVKAKADWWTNTAHYNRERI KAKADWWTNTAHYNRERIRRGATVDKTVCK K A D N R E 2 1 2 1 0 0 0 0 1 0 0 0 0 0 0 0 2 2 1 0 0 0 12 0 1533.6749 Q6P2Q9 Q6P2Q9 747 758 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 5.5807E-12 177.7 By matching By MS/MS By MS/MS 1.17 0.373 5 1 1 2 3 96119000 772600 27234000 68112000 276 1490 286 1132;1133;1134;1135;1136;1137 913;914;915;916 915 4 772600 13312000 14726000 AEAAAGAAGILLR ______________________________ GRAEAAAGAAGILLRYLQEQNRPYSSQDVF R A E L R Y 6 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 13 0 1182.6721 Q9P2W1 Q9P2W1 6 18 PSMC3IP Homologous-pairing protein 2 homolog yes yes 2 0.00065688 81.338 By MS/MS 7 0 1 1 0 0 0 0 277 2127 287 1138 917 917 1 0 0 0 AEAAASALADADADLEER PSTGGSLSVAAGGKKAEAAASALADADADL AASALADADADLEERLKNLRRD________ K A E E R L 8 1 0 3 0 0 3 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 18 0 1787.8174 O43633 O43633 198 215 CHMP2A Charged multivesicular body protein 2a yes yes 2 3.5553E-08 113.72 By MS/MS 6 0 1 1 3956500 0 0 3956500 278 204 288 1139 918 918 1 0 0 591930 AEAAGLIGWLK VSWVLRSVAEHPLSRAEAAGLIGWLKSHIL PLSRAEAAGLIGWLKSHILPHPVVVADLLK R A E L K S 3 0 0 0 0 0 1 2 0 1 2 1 0 0 0 0 0 1 0 0 0 0 11 0 1127.6339 O60287 O60287 2116 2126 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.010282 90.657 By MS/MS 2 0.816 1 1 1 3 12148000 0 0 12148000 279 224 289 1140;1141;1142 919 919 1 0 0 2581900 AEAALEEESR HNSPAYLAYINAKSRAEAALEEESRQRQSR NAKSRAEAALEEESRQRQSRMEKGEPYMSI R A E S R Q 3 1 0 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1103.5095 Q969G3 Q969G3 149 158 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 2 0.0064959 94.692 By MS/MS 4 0 1 1 2070700 0 0 2070700 280 1741 290 1143 920 920 1 0 0 338210 AEAEALYQTK AEVRAQYEEIAQRSKAEAEALYQTKVQQLQ AQRSKAEAEALYQTKVQQLQISVDQHGDNL K A E T K V 3 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 10 0 1122.5557 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;CON__P12035;P12035;CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7;CON__Q3SY84;Q3SY84;CON__P19013;P19013 CON__P19013 398 407 KRT78;KRT3;KRT73;KRT74;KRT71;KRT4 Keratin, type II cytoskeletal 78;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 4 no no 2 0.00036388 133.13 By MS/MS By matching By matching 5.73 3.19 1 2 1 1 1 1 1 1 2 9 1 1 73470000 70541000 1715000 1213500 + 281 61;54;94;80 291 1144;1145;1146;1147;1148;1149;1150;1151;1152;1153;1154 921;922;923;924;925 924 5 75796000 772270 2654100 AEAESLYQSK AEVKAQYEDIAQKSKAEAESLYQSKYEELQ AQKSKAEAESLYQSKYEELQITAGRHGDSV K A E S K Y 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 10 0 1124.535 P04264;CON__P04264 P04264 367 376 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.6403E-16 180.44 By MS/MS By MS/MS By MS/MS 5.7 2.93 4 1 4 4 3 3 3 3 4 4 16 8 9 6076100000 5373000000 80347000 622740000 + 282 413 292 1155;1156;1157;1158;1159;1160;1161;1162;1163;1164;1165;1166;1167;1168;1169;1170;1171;1172;1173;1174;1175;1176;1177;1178;1179;1180;1181;1182;1183;1184;1185;1186;1187 926;927;928;929;930;931;932;933;934;935;936;937;938;939;940;941;942;943;944;945;946;947;948;949;950;951;952;953;954;955;956;957;958 926 32 5442500000 71078000 239260000 AEAESLYQSKYEELQITAGR AEVKAQYEDIAQKSKAEAESLYQSKYEELQ LYQSKYEELQITAGRHGDSVRNSKIEISEL K A E G R H 3 1 0 0 0 2 4 1 0 1 2 1 0 0 0 2 1 0 2 0 0 0 20 1 2285.1176 P04264;CON__P04264 P04264 367 386 KRT1 Keratin, type II cytoskeletal 1 yes no 3 9.6224E-58 220.82 By MS/MS 5.43 2.97 1 1 1 1 1 1 1 7 120760000 120760000 0 0 + 283 413 293 1188;1189;1190;1191;1192;1193;1194 959;960;961;962 960 4 96874000 0 0 AEAESMYQIK AEVKAQYEDIANRSRAEAESMYQIKYEELQ ANRSRAEAESMYQIKYEELQSLAGKHGDDL R A E I K Y 2 0 0 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 1 0 0 0 10 0 1168.5434 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 276 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00011152 145.63 By MS/MS By MS/MS 3.75 1.71 1 1 1 3 1 1 2 6 691240000 0 148040000 543200000 + 284 49 294;295 1195;1196;1197;1198;1199;1200;1201;1202 963;964;965;966;967;968;969;970;971 963 25 9 0 47044000 93326000 AEAESWYQTK AEVKAQYEEIAQRSRAEAESWYQTKYEELQ AQRSRAEAESWYQTKYEELQVTAGRHGDDL R A E T K Y 2 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 10 0 1211.5459 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 350 359 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 6.8119E-09 158.76 By MS/MS By MS/MS 5 3.13 2 2 2 2 1 2 6 5 273600000 229540000 0 44067000 + 285 68;37;47;69 296 1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213 972;973;974;975;976;977;978;979;980 977 9 188840000 0 7596300 AEAESWYQTKYEELQVTAGR AEVKAQYEEIAQRSRAEAESWYQTKYEELQ WYQTKYEELQVTAGRHGDDLRNTKQEIAEI R A E G R H 3 1 0 0 0 2 4 1 0 0 1 1 0 0 0 1 2 1 2 1 0 0 20 1 2358.1128 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 350 369 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 3.756E-14 149.36 By MS/MS 8.5 0.5 1 1 2 4395600 4395600 0 0 + 286 68;37;47;69 297 1214;1215 981 981 1 2775400 0 0 AEAGAGSATEFQFR DTYRRSAVPPGADKKAEAGAGSATEFQFRG KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K A E F R G 4 1 0 0 0 1 2 2 0 0 0 0 0 2 0 1 1 0 0 0 0 0 14 0 1440.6634 P46783;Q9NQ39 P46783 140 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2 6.205E-196 307.55 By MS/MS By MS/MS By MS/MS 7.83 1.07 3 2 1 1 3 2 257290000 3022600 155250000 99012000 287 833 298 1216;1217;1218;1219;1220;1221 982;983;984;985;986;987;988;989;990;991 988 10 6514400 95757000 16941000 AEAGEQPGTAER KRSRRRGVGADPEARAEAGEQPGTAERALL EARAEAGEQPGTAERALLRDQPRGRGQRGA R A E E R A 3 1 0 0 0 1 3 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 12 0 1214.5527 P56182 P56182 404 415 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.02919 78.655 By MS/MS By MS/MS 3.86 1.25 1 2 2 1 1 5 2 4676500 0 3749800 926700 288 948 299 1222;1223;1224;1225;1226;1227;1228 992;993;994 994 3 0 1295100 170260 AEAGVPAEFSIWTR GGAHKVRAGGPGLERAEAGVPAEFSIWTRE RAEAGVPAEFSIWTREAGAGGLAIAVEGPS R A E T R E 3 1 0 0 0 0 2 1 0 1 0 0 0 1 1 1 1 1 0 1 0 0 14 0 1532.7623 P21333 P21333 2251 2264 FLNA Filamin-A yes yes 2 0.00048195 145.91 By MS/MS By matching 2 0.816 1 1 1 2 1 29201000 0 26527000 2674100 289 623 300 1229;1230;1231 995;996 995 2 0 12796000 518640 AEAMDLGKDPNGPTHSSTLFVR ______________________________ KDPNGPTHSSTLFVRDDGSSMSFYVRPSPA M A E V R D 2 1 1 2 0 0 1 2 1 0 2 1 1 1 2 2 2 0 0 1 0 0 22 1 2342.1325 Q9NYB0 Q9NYB0 2 23 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 3 0.00025087 67.11 By MS/MS 4 0 1 1 4823700 0 4823700 0 290 2096 301 1232 997 997 1 0 1600800 0 AEAMSGHIDQFLIATFMQLR QALTQIDEVLRQEDKAEAMSGHIDQFLIAT GHIDQFLIATFMQLRLIYNTHMADEKLEKD K A E L R L 3 1 0 1 0 2 1 1 1 2 2 0 2 2 0 1 1 0 0 0 0 0 20 0 2278.1238 Q14008 Q14008 1574 1593 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 5.1719E-06 89.049 By MS/MS 1 0 1 1 2718500 0 0 2718500 291 1279 302 1233 998 998 1 0 0 585740 AEAQQVEALPGPSLDQWHR KKKKRKKLKKKGKEKAEAQQVEALPGPSLD QVEALPGPSLDQWHRSAGEEEDGPVLTDEQ K A E H R S 3 1 0 1 0 3 2 1 1 0 2 0 0 0 2 1 0 1 0 1 0 0 19 0 2131.0447 Q66PJ3 Q66PJ3 313 331 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes yes 3 1.0755E-09 130.62 By matching By MS/MS 6.67 0.471 1 2 2 1 13012000 0 3431000 9580900 292 1466 303 1234;1235;1236 999 999 1 0 1519400 1700100 AEDGSVIDYELIDQDAR GDFRKLMVALAKGRRAEDGSVIDYELIDQD DGSVIDYELIDQDARDLYDAGVKRKGTDVP R A E A R D 2 1 0 4 0 1 2 1 0 2 1 0 0 0 0 1 0 0 1 1 0 0 17 0 1907.8749 P07355 P07355 180 196 ANXA2 Annexin A2 yes yes 2 8.0794E-06 133.15 By matching By MS/MS 5.67 0.471 1 2 2 1 23563000 3489900 0 20073000 293 459 304 1237;1238;1239 1000 1000 1 3187300 0 3003200 AEDKEWMPVTK RGRGRGRGRGARGGKAEDKEWMPVTKLGRL RGGKAEDKEWMPVTKLGRLVKDMKIKSLEE K A E T K L 1 0 0 1 0 0 2 0 0 0 0 2 1 0 1 0 1 1 0 1 0 0 11 1 1332.6384 P15880 P15880 55 65 RPS2 40S ribosomal protein S2 yes yes 2;3 0.0022069 130.01 By matching By MS/MS By MS/MS 6.11 0.567 1 6 2 1 3 5 394980000 1031600 80029000 313920000 294 571 305;306 1240;1241;1242;1243;1244;1245;1246;1247;1248 1001;1002;1003;1004;1005;1006 1002 254 6 1373600 27563000 47370000 AEDKPSTDLSAPVNGEATSQK LAGEELAGEEAPQEKAEDKPSTDLSAPVNG TDLSAPVNGEATSQKGESAEDKEHEEGRDS K A E Q K G 3 0 1 2 0 1 2 1 0 0 1 2 0 0 2 3 2 0 0 1 0 0 21 1 2144.0233 Q7Z4V5 Q7Z4V5 590 610 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 3 0.0020171 68.676 By MS/MS 2 0.816 1 1 1 3 17942000 0 0 17942000 295 1533 307 1249;1250;1251 1007 1007 0 0 0 3871000 AEDNADTLALVFEAPNQEK KILKCAGNEDIITLRAEDNADTLALVFEAP ADTLALVFEAPNQEKVSDYEMKLMDLDVEQ R A E E K V 4 0 2 2 0 1 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 19 0 2073.9855 P12004 P12004 92 110 PCNA Proliferating cell nuclear antigen yes yes 2;3 1.0362E-30 197.06 By MS/MS 6 0 2 2 32223000 0 0 32223000 296 531 308 1252;1253 1008;1009 1008 2 0 0 4821000 AEDTAVYYCAR DDSRNTVYLQMNSLRAEDTAVYYCARDLAA NSLRAEDTAVYYCARDLAAARLFGKGTTVT R A E A R D 3 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 11 0 1317.566 P0DOX2;A0A0J9YVY3;A0A0B4J1X5;A0A0C4DH42;P0DP02;P01767;P01772;P01780;A0A0B4J1V1;P01763;P01762 P0DOX2 87 97 IGHV3-74;IGHV3-66;IGHV3-21 Ig heavy chain V-III region BUT;Ig heavy chain V-III region KOL;Ig heavy chain V-III region JON;Ig heavy chain V-III region WEA;Ig heavy chain V-III region TRO no no 2 5.4437E-05 144.09 By MS/MS 9 0 1 1 8423800 8423800 0 0 297 503;4;378 309 1254 1010 1010 1 4728400 0 0 AEEDTQFNYHR ELAQEYDKRKKEMVKAEEDTQFNYHRKKNI EMVKAEEDTQFNYHRKKNIAAERKEAKQEK K A E H R K 1 1 1 1 0 1 2 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 11 0 1408.6008 Q14683 Q14683 178 188 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 5.2085E-27 204.27 By MS/MS By MS/MS 1.67 0.667 4 4 1 4 5 70715000 0 19599000 51116000 298 1312 310 1255;1256;1257;1258;1259;1260;1261;1262;1263 1011;1012;1013;1014;1015;1016;1017 1015 7 0 9097300 11112000 AEEGIAAGGVMDVNTALQEVLK ______________________________ GGVMDVNTALQEVLKTALIHDGLARGIREA M A E L K T 4 0 1 1 0 1 3 3 0 1 2 1 1 0 0 0 1 0 0 3 0 0 22 0 2214.1202 P25398 P25398 2 23 RPS12 40S ribosomal protein S12 yes yes 2 5.3199E-09 92.939 By MS/MS 9 0 1 1 1162100 0 0 1162100 299 657 311 1264 1018 1018 1 0 0 371230 AEEILEK RNEKIAVHCTVRGAKAEEILEKGLKVREYE HCTVRGAKAEEILEKGLKVREYELRKNNFS K A E E K G 1 0 0 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 830.43855 P62913 P62913 79 85 RPL11 60S ribosomal protein L11 yes yes 2 0.017336 107.32 By matching By MS/MS 7.33 0.471 2 1 1 2 292000000 0 13584000 278420000 300 1051 312 1265;1266;1267 1019 1019 1 0 7800000 49221000 AEELGQELK ASENLRQELTSQAERAEELGQELKAWQEKF TSQAERAEELGQELKAWQEKFFQKEQALST R A E L K A 1 0 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1015.5186 Q14980 Q14980 1322 1330 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0078023 99.305 By MS/MS By MS/MS 1 0 2 1 1 0 0 0 0 301 1327 313 1268;1269 1020;1021 1020 2 0 0 0 AEEVATFFAK VKFYYDGKVMKLSPKAEEVATFFAKMLDHE KLSPKAEEVATFFAKMLDHEYTTKEIFRKN K A E A K M 3 0 0 0 0 0 2 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 10 0 1111.555 P11387 P11387 253 262 TOP1 DNA topoisomerase 1 yes yes 2 0.00073632 114.2 By matching By MS/MS By MS/MS 2 0.816 2 2 2 1 2 3 250980000 1933900 52999000 196050000 302 523 314 1270;1271;1272;1273;1274;1275 1022;1023;1024;1025;1026 1023 5 1933900 23438000 41083000 AEEYEFLTPVEEAPK KIDKTDYMVGSYGPRAEEYEFLTPVEEAPK AEEYEFLTPVEEAPKGMLARGSYSIKSRFT R A E P K G 2 0 0 0 0 0 5 0 0 0 1 1 0 1 2 0 1 0 1 1 0 0 15 0 1750.8301 P52565 P52565 153 167 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 2 0.00028234 130.56 By matching By MS/MS 7 0.707 1 2 1 1 3 42119000 0 894610 41225000 303 909 315 1276;1277;1278;1279 1027;1028;1029 1028 2 0 513690 7067100 AEEYTEETEEREESTTGFDK SRSSSSSSQSSHSYKAEEYTEETEEREEST EETEEREESTTGFDKSRLGTKDFVGPSERG K A E D K S 1 1 0 1 0 0 8 1 0 0 0 1 0 1 0 1 4 0 1 0 0 0 20 1 2378.9874 Q9Y2W1 Q9Y2W1 792 811 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 6.0899E-14 125.88 By MS/MS 2 0 1 1 6003500 0 0 6003500 304 2252 316 1280 1030 1030 1 0 0 1356700 AEFAEVSK FKAWAVARLSQRFPKAEFAEVSKLVTDLTK LSQRFPKAEFAEVSKLVTDLTKVHTECCHG K A E S K L 2 0 0 0 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 8 0 879.4338 CON__P02768-1;P02768 CON__P02768-1 250 257 ALB Serum albumin yes no 2 5.5264E-06 125.81 By MS/MS By matching By matching 6.89 2.92 1 1 1 1 1 1 3 6 1 2 1039400000 1006800000 678500 31868000 + 305 44 317 1281;1282;1283;1284;1285;1286;1287;1288;1289 1031;1032;1033;1034;1035;1036 1033 6 786100000 3432600 65225000 AEFAEVSKLVTDLTK FKAWAVARLSQRFPKAEFAEVSKLVTDLTK AEFAEVSKLVTDLTKVHTECCHGDLLECAD K A E T K V 2 0 0 1 0 0 2 0 0 0 2 2 0 1 0 1 2 0 0 2 0 0 15 1 1649.8876 CON__P02768-1;P02768 CON__P02768-1 250 264 ALB Serum albumin yes no 2 2.0468E-06 166.6 By MS/MS 9 0 1 1 3389100 3389100 0 0 + 306 44 318 1290 1037 1037 1 1902300 0 0 AEFHHSIMSQYK EAMQSLQLSIGVRNKAEFHHSIMSQYKLKA RNKAEFHHSIMSQYKLKASAISVTVLNVIE K A E Y K L 1 0 0 0 0 1 1 0 2 1 0 1 1 1 0 2 0 0 1 0 0 0 12 0 1476.682 Q02413 Q02413 355 366 DSG1 Desmoglein-1 yes yes 3 0.001044 101.64 By MS/MS By MS/MS 5 2.96 2 2 2 2 2 1 1 1 1 2 10 6 114110000 92233000 0 21876000 307 1146 319 1291;1292;1293;1294;1295;1296;1297;1298;1299;1300;1301;1302;1303;1304;1305;1306 1038;1039;1040;1041;1042;1043;1044 1043 7 90506000 0 7594900 AEFVEVTK LKAWSVARLSQKFPKAEFVEVTKLVTDLTK LSQKFPKAEFVEVTKLVTDLTKVHKECCHG K A E T K L 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 8 0 921.48075 CON__P02769 CON__P02769 249 256 yes yes 2 0.010304 93.374 By MS/MS By MS/MS By MS/MS 5.87 2.94 1 1 2 2 1 2 1 1 1 3 10 3 2 1051000000 898870000 107790000 44327000 + 308 45 320 1307;1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320;1321 1045;1046;1047;1048;1049;1050;1051;1052;1053;1054;1055 1046 10 937070000 272570000 49059000 AEGDSAGTAGTPGGTPAGDK RKLRIYISNTFSPSKAEGDSAGTAGTPGGT AGTAGTPGGTPAGDKVASWELRVEGKLLDD K A E D K V 4 0 0 2 0 0 1 6 0 0 0 1 0 0 2 1 3 0 0 0 0 0 20 0 1715.7598 Q92925 Q92925 207 226 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 2 2.3282E-13 128.95 By MS/MS 3.5 0.5 1 1 2 6153600 0 0 6153600 309 1732 321 1322;1323 1056 1056 1 0 0 1173500 AEGDVAALNR GLQRELDGERERREKAEGDVAALNRRIQLV ERREKAEGDVAALNRRIQLVEEELDRAQER K A E N R R 3 1 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1014.5094 P67936 P67936 45 54 TPM4 Tropomyosin alpha-4 chain yes yes 2 0.020983 82.452 By MS/MS 6 0 1 1 2229200 0 2229200 0 310 1074 322 1324 1057 1057 1 0 771660 0 AEGEWEDQEALDYFSDK RDKEASKEKGSEKGRAEGEWEDQEALDYFS GEWEDQEALDYFSDKESGKQKFNDSEGDDT R A E D K E 2 0 0 3 0 1 4 1 0 0 1 1 0 1 0 1 0 1 1 0 0 0 17 0 2030.8381 Q9NYF8 Q9NYF8 371 387 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 5.771E-06 150.21 By MS/MS 2 0 1 1 4700000 0 0 4700000 311 2097 323 1325 1058 1058 1 0 0 1062100 AEGFVDALHR MAELVQGQSAPVGMKAEGFVDALHRVRQIA PVGMKAEGFVDALHRVRQIAAKIDSIPHLN K A E H R V 2 1 0 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1113.5567 Q96I24 Q96I24 16 25 FUBP3 Far upstream element-binding protein 3 yes yes 2 5.1851E-20 141.2 By MS/MS 3.5 0.5 1 1 2 7112500 0 7112500 0 312 1797 324 1326;1327 1059;1060 1060 2 0 3032000 0 AEGGGATTSTQVMVIK KLLVKMPFQTSPGGKAEGGGATTSTQVMVI EGGGATTSTQVMVIKRPGRKRKAEADPQAI K A E I K R 2 0 0 0 0 1 1 3 0 1 0 1 1 0 0 1 3 0 0 2 0 0 16 0 1548.7818 P51608 P51608 234 249 MECP2 Methyl-CpG-binding protein 2 yes yes 2 4.8487E-05 137.4 By MS/MS 3 0 1 1 8505500 0 8505500 0 313 896 325 1328 1061 1061 1 0 3625900 0 AEGGGGGGRPGAPAAGDGK PGARQGQQQAGGKKKAEGGGGGGRPGAPAA GGGGRPGAPAAGDGKTEQKGGDKKRGVKRP K A E G K T 4 1 0 1 0 0 1 9 0 0 0 1 0 0 2 0 0 0 0 0 0 0 19 1 1537.7233 Q00839 Q00839 216 234 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 0.040362 35.625 By MS/MS 2.5 0.5 1 1 2 1930800 0 1930800 0 314 1127 326 1329;1330 1062 1062 1 0 842430 0 AEGGYFGQIR TMEQLEAMTGGEQLKAEGGYFGQIRNTKKS GEQLKAEGGYFGQIRNTKKSSQRLKDALLD K A E I R N 1 1 0 0 0 1 1 3 0 1 0 0 0 1 0 0 0 0 1 0 0 0 10 0 1096.5302 Q8NI27 Q8NI27 711 720 THOC2 THO complex subunit 2 yes yes 2 2.99E-05 151.27 By MS/MS 1 0 1 1 18115000 0 0 18115000 315 1647 327 1331 1063 1063 1 0 0 3903100 AEGPEVDVNLPK MPKMKMPKFSVPGFKAEGPEVDVNLPKADV GFKAEGPEVDVNLPKADVDISGPKIDVTAP K A E P K A 1 0 1 1 0 0 2 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 12 0 1266.6456 Q09666 Q09666 764 775 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.027469 72.006 By MS/MS 1 0 1 1 0 0 0 0 316 1190 328 1332 1064 1064 1 0 0 0 AEGSSTASSGSQLAEGK HSEPQARGDPGDQTKAEGSSTASSGSQLAE GSSTASSGSQLAEGKGSQMGTVQPIPCLLS K A E G K G 3 0 0 0 0 1 2 3 0 0 1 1 0 0 0 5 1 0 0 0 0 0 17 0 1565.7169 Q9NZB2 Q9NZB2 503 519 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 9.3948E-06 117.93 By MS/MS 2.5 0.5 1 1 2 4159700 0 4159700 0 317 2101 329 1333;1334 1065;1066 1065 2 0 1848100 0 AEGYAEGDLTLYHR QAKTVTELVTKKKPKAEGYAEGDLTLYHRT KAEGYAEGDLTLYHRTSVTDFLRAANPVDF K A E H R T 2 1 0 1 0 0 2 2 1 0 2 0 0 0 0 0 1 0 2 0 0 0 14 0 1593.7423 Q8IY81 Q8IY81 238 251 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.02742 80.014 By MS/MS By matching 2.5 0.5 1 1 1 1 9894000 0 2947200 6946800 318 1590 330 1335;1336 1067 1067 0 0 1327200 1347300 AEHDQLLLNYAK ARERAKLQIELGKCKAEHDQLLLNYAKKES KCKAEHDQLLLNYAKKESDLNGAQIKLREY K A E A K K 2 0 1 1 0 1 1 0 1 0 3 1 0 0 0 0 0 0 1 0 0 0 12 0 1413.7252 P20700 P20700 112 123 LMNB1 Lamin-B1 yes yes 2;3 3.1951E-25 198.25 By MS/MS By MS/MS 3.08 1.19 1 3 4 2 2 4 8 669390000 0 107530000 561850000 319 619 331 1337;1338;1339;1340;1341;1342;1343;1344;1345;1346;1347;1348 1068;1069;1070;1071;1072;1073;1074;1075;1076;1077;1078 1073 11 0 45980000 103770000 AEHDSILAEK PEYIYTRLEMYNILKAEHDSILAEKAEKDS YNILKAEHDSILAEKAEKDSKPIKVTLPDG K A E E K A 2 0 0 1 0 0 2 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1111.551 P26639 P26639 66 75 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.00099816 110.88 By MS/MS By MS/MS 3 0 2 1 1 5568900 0 653140 4915800 320 672 332 1349;1350 1079;1080 1080 2 0 278430 953420 AEIIQER ______________________________ ______________________________ M A E E R I 1 1 0 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 857.46068 Q9NYH9 Q9NYH9 2 8 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 2 0.032261 73.324 By MS/MS 4 0 1 1 1828300 0 1828300 0 321 2098 333 1351 1081 1081 1 0 606740 0 AEIQELAMVPR GDEMNLHLPQSLETRAEIQELAMVPRMIVT LETRAEIQELAMVPRMIVTPQSNRPVMGIV R A E P R M 2 1 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 0 0 1 0 0 11 0 1255.6595 P24928 P24928 513 523 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 2.145E-05 149.72 By matching By MS/MS 1 0 2 1 1 14158000 2249400 0 11909000 322 653 334 1352;1353 1082 1082 1 2249400 0 2566000 AELATEEFLPVTPILEGFVILR FQTHTTPVLLAHGERAELATEEFLPVTPIL FLPVTPILEGFVILRKNPNYDL________ R A E L R K 2 1 0 0 0 0 4 1 0 2 4 0 0 2 2 0 2 0 0 2 0 0 22 0 2456.3567 Q13200 Q13200 880 901 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 2;3 0.0012274 58.479 By MS/MS 1.5 0.5 2 2 4 6085000 0 0 6085000 323 1229 335 1354;1355;1356;1357 1083;1084 1083 2 0 0 1333400 AELDDTPMR GFIKLESRALAEIAKAELDDTPMRGRQLRV LAEIAKAELDDTPMRGRQLRVRFATHAAAL K A E M R G 1 1 0 2 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 9 0 1046.4703 P23246 P23246 350 358 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 6.0213E-32 202.17 By MS/MS By MS/MS 2.12 0.781 2 3 3 4 4 316040000 0 135060000 180980000 324 638 336;337 1358;1359;1360;1361;1362;1363;1364;1365 1085;1086;1087;1088;1089;1090;1091 1086 7 0 60859000 36712000 AELDEVNK ARERARLQIEIGKLRAELDEVNKSAKKREG IEIGKLRAELDEVNKSAKKREGELTVAQGR R A E N K S 1 0 1 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 916.45018 Q03252 Q03252 126 133 LMNB2 Lamin-B2 yes yes 2 0.016005 87.435 By MS/MS 3 0 1 1 52908000 0 0 52908000 325 1156 338 1366 1092 1092 1 0 0 10262000 AELEALLSSK QEAREELERQNRALRAELEALLSSKDDVGK NRALRAELEALLSSKDDVGKSVHELERACR R A E S K D 2 0 0 0 0 0 2 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 10 0 1059.5812 Q7Z406 Q7Z406 1528 1537 MYH14 Myosin-14 yes yes 2 8.8371E-06 113.71 By MS/MS 1 0 1 1 0 0 0 0 326 1531 339 1367 1093 1093 1 0 0 0 AELEGVAVTAPR ALIRRYQEIEEDRKKAELEGVAVTAPRKGR RKKAELEGVAVTAPRKGRSVEKENVAVESE K A E P R K 3 1 0 0 0 0 2 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 12 0 1211.651 Q9Y3X0 Q9Y3X0 45 56 CCDC9 Coiled-coil domain-containing protein 9 yes yes 2 0.0049715 103.26 By MS/MS 3 0 1 1 5011800 0 5011800 0 327 2279 340 1368 1094 1094 1 0 2136500 0 AELGTDLLSQLSLEDQK EASLHAMESTRESLKAELGTDLLSQLSLED LGTDLLSQLSLEDQKRVDALNDEIRQLQQE K A E Q K R 1 0 0 2 0 2 2 1 0 0 5 1 0 0 0 2 1 0 0 0 0 0 17 0 1858.9524 Q9UQE7 Q9UQE7 779 795 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 1.5813E-36 206.69 By MS/MS 1.5 0.5 1 1 2 23355000 0 0 23355000 328 2222 341 1369;1370 1095 1095 1 0 0 5228100 AELGTDLLSQLSLEDQKR EASLHAMESTRESLKAELGTDLLSQLSLED GTDLLSQLSLEDQKRVDALNDEIRQLQQEN K A E K R V 1 1 0 2 0 2 2 1 0 0 5 1 0 0 0 2 1 0 0 0 0 0 18 1 2015.0535 Q9UQE7 Q9UQE7 779 796 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 2.0521E-134 276.25 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 61376000 0 4624700 56752000 329 2222 342 1371;1372;1373;1374;1375;1376 1096;1097;1098;1099;1100 1099 5 0 2082600 12544000 AELIVQPELK TIQELLQNCSDCLMRAELIVQPELKYGDGI DCLMRAELIVQPELKYGDGIQLTRSRELDE R A E L K Y 1 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 10 0 1138.6598 P15924 P15924 85 94 DSP Desmoplakin yes yes 2 0.0014824 108.98 By MS/MS By MS/MS By matching 5.5 3.23 3 1 1 2 1 1 1 5 2 3 128420000 63510000 19936000 44971000 330 572 343 1377;1378;1379;1380;1381;1382;1383;1384;1385;1386 1101;1102;1103;1104;1105;1106 1106 4 56126000 9899900 16443000 AELLDNEKPAAVVAPITTGYTVK ETEIKNKMQQKSQKKAELLDNEKPAAVVAP PAAVVAPITTGYTVKISNYGWDQSDKFVKI K A E V K I 4 0 1 1 0 0 2 1 0 1 2 2 0 0 2 0 3 0 1 3 0 0 23 1 2399.2948 Q9HB71 Q9HB71 52 74 CACYBP Calcyclin-binding protein yes yes 3 1.7973E-05 77.235 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 19437000 0 2556600 16881000 331 2006 344 1387;1388;1389 1107;1108;1109 1109 3 0 1468000 2876800 AELNEFLTR QISKKRKFVADGIFKAELNEFLTRELAEDG ADGIFKAELNEFLTRELAEDGYSGVEVRVT K A E T R E 1 1 1 0 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1091.5611 P23396 P23396 19 27 RPS3 40S ribosomal protein S3 yes yes 2 1.4779E-07 161.02 By MS/MS 6 0 1 1 266640000 0 0 266640000 332 641 345 1390 1110 1110 1 0 0 39893000 AELNESIR ISYEAIKRGQLALDRAELNESIRATNENLA GQLALDRAELNESIRATNENLALQYSKLQT R A E I R A 1 1 1 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 930.47706 Q50LE6 Q50LE6 114 121 yes yes 2 0.0047021 100.74 By MS/MS 5 0 1 1 20947000 0 20947000 0 333 1420 346 1391 1111 1111 1 0 5399500 0 AELNPWPEYIYTR GGKKKNKEGSGDGGRAELNPWPEYIYTRLE GRAELNPWPEYIYTRLEMYNILKAEHDSIL R A E T R L 1 1 1 0 0 0 2 0 0 1 1 0 0 0 2 0 1 1 2 0 0 0 13 0 1650.8042 P26639 P26639 45 57 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.00033283 140.78 By MS/MS 3 0 1 1 11667000 0 0 11667000 334 672 347 1392 1112 1112 1 0 0 2262900 AELVQGQSAPVGMK ______________________________ MAELVQGQSAPVGMKAEGFVDALHRVRQIA M A E M K A 2 0 0 0 0 2 1 2 0 0 1 1 1 0 1 1 0 0 0 2 0 0 14 0 1413.7286 Q96I24 Q96I24 2 15 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0002002 147.37 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 4 2 104480000 0 75361000 29118000 335 1797 348;349 1393;1394;1395;1396;1397;1398 1113;1114;1115;1116 1113 666 4 0 26085000 5396700 AELVQLVSPFLGK FLRCLVIFNQEVISRAELVQLVSPFLGKFP SRAELVQLVSPFLGKFPELFNWFKNFLGYK R A E G K F 1 0 0 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 2 0 0 13 0 1399.8075 Q96ST3 Q96ST3 498 510 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0089707 89.266 By MS/MS 2 0 1 1 2270800 0 2270800 0 336 1836 350 1399 1117 1117 1 0 1022600 0 AELYKEPTNEELNR EPPAKGLLQPVKLSRAELYKEPTNEELNRL RAELYKEPTNEELNRLRETEILFHSSLLRL R A E N R L 1 1 2 0 0 0 4 0 0 0 2 1 0 0 1 0 1 0 1 0 0 0 14 1 1704.8319 Q9H6R4 Q9H6R4 58 71 NOL6 Nucleolar protein 6 yes yes 2;3 0.00012968 139.74 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 34653000 0 8263500 26390000 337 1988 351 1400;1401;1402;1403 1118;1119;1120 1119 3 0 3721200 5894500 AEMDMVAWGVDLASVEQHINSHR KHVTSECLGWMRQQRAEMDMVAWGVDLASV GVDLASVEQHINSHRGIHNSIGDYRWQLDK R A E H R G 3 1 1 2 0 1 2 1 2 1 1 0 2 0 0 2 0 1 0 3 0 0 23 0 2594.2006 P15924 P15924 200 222 DSP Desmoplakin yes yes 3 8.8837E-15 114.04 By MS/MS 1 0 1 1 7550200 0 0 7550200 338 572 352 1404 1121 1121 1 0 0 1626800 AENDVDNELLDYEDDEVETAAGGDGAEAPAKK ______________________________ ETAAGGDGAEAPAKKDVKGSYVSIHSSGFR M A E K K D 6 0 2 6 0 0 6 3 0 0 2 2 0 0 1 0 1 0 1 2 0 0 32 1 3349.4594 Q13838 Q13838 2 33 DDX39B Spliceosome RNA helicase DDX39B yes yes 3 2.4301E-26 108.56 By MS/MS 5 0 1 1 7664800 0 0 7664800 339 1271 353 1405 1122 1122 1 0 0 1069100 AENFFILR EKILCHKFMRFMMMRAENFFILRRKPVEGY MRFMMMRAENFFILRRKPVEGYDISFLITN R A E L R R 1 1 1 0 0 0 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1008.5393 P59998 P59998 98 105 ARPC4 Actin-related protein 2/3 complex subunit 4 yes yes 2 1.1996E-06 162.51 By MS/MS By MS/MS 7.8 0.748 2 2 1 2 3 25238000 0 10831000 14407000 340 960 354 1406;1407;1408;1409;1410 1123;1124;1125;1126;1127 1126 5 0 5289900 2611000 AENNSEVGASGYGVPGPTWDR PTTMGGPLPPHLALKAENNSEVGASGYGVP VGASGYGVPGPTWDRGANLKDYYSRKEEQE K A E D R G 2 1 2 1 0 0 2 4 0 0 0 0 0 0 2 2 1 1 1 2 0 0 21 0 2161.9665 Q08211 Q08211 121 141 DHX9 ATP-dependent RNA helicase A yes yes 2 6.8034E-141 272.35 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 97323000 0 30361000 66962000 341 1182 355 1411;1412;1413;1414;1415 1128;1129;1130;1131 1130 4 0 13995000 14854000 AENPYLFLR TGHGNLRPRKTRPLKAENPYLFLRGLPYLV KTRPLKAENPYLFLRGLPYLVNEDDVRVFF K A E L R G 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1121.5869 Q8IXT5 Q8IXT5 152 160 RBM12B RNA-binding protein 12B yes yes 2 0.00085891 110.81 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 26850000 0 9233900 17617000 342 1587 356 1416;1417;1418 1132;1133;1134 1134 3 0 4158200 3933100 AEPASVAAESLAGSR ______________________________ AEPASVAAESLAGSRARAARTVLGQVVLPG M A E S R A 5 1 0 0 0 0 2 1 0 0 1 0 0 0 1 3 0 0 0 1 0 0 15 0 1414.7052 Q9NQT5 Q9NQT5 2 16 EXOSC3 Exosome complex component RRP40 yes yes 2 1.0411E-25 203.51 By MS/MS By MS/MS 6 0 2 1 1 55889000 0 19418000 36471000 343 2036 357 1419;1420 1135;1136 1136 2 0 6722000 5456400 AEPEAGEEQAGDDR SQKRSEKPPAGSICRAEPEAGEEQAGDDRD RAEPEAGEEQAGDDRDSGGPVLQFDYEAVA R A E D R D 3 1 0 2 0 1 4 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 14 0 1472.6015 P56182 P56182 276 289 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.03567 67.385 By MS/MS 4 0 1 1 869970 0 0 869970 344 948 358 1421 1137 1137 1 0 0 142090 AEPLNSVAH IDEETDSALDLGNIRAEPLNSVAH______ DLGNIRAEPLNSVAH_______________ R A E A H - 2 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 9 0 936.46649 O95777 O95777 88 96 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 2 0.0063322 94.662 By MS/MS By matching 9.67 0.471 1 2 2 1 26273000 24199000 2073700 0 345 338 359 1422;1423;1424 1138;1139;1140 1140 3 26370000 10491000 0 AEPPKAPEQEQAAPGPAAGGEAPK PKAEPEKTEGAAEAKAEPPKAPEQEQAAPG EQAAPGPAAGGEAPKAAEAAAAPAESAAPA K A E P K A 7 0 0 0 0 2 4 3 0 0 0 2 0 0 6 0 0 0 0 0 0 0 24 1 2297.1288 P80723 P80723 98 121 BASP1 Brain acid soluble protein 1 yes yes 3 0.00026122 62.082 By MS/MS 3.5 0.5 1 1 2 11167000 0 0 11167000 346 1093 360 1425;1426 1141 1141 1 0 0 1940100 AEPPQAMNALMR SPSKKKKKIQKKEEKAEPPQAMNALMRLNQ EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ K A E M R L 3 1 1 0 0 1 1 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 12 0 1327.6377 Q12906 Q12906 397 408 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 2.1593E-05 152.47 By MS/MS By MS/MS 3.56 2.22 1 2 3 1 1 1 7 2 160970000 0 115620000 45346000 347 1211 361;362 1427;1428;1429;1430;1431;1432;1433;1434;1435 1142;1143;1144;1145;1146;1147;1148;1149;1150;1151;1152;1153;1154 1145 13 0 52218000 9041800 AEPVEVVAPR LFLAHILSPWGAEVKAEPVEVVAPRGKSGA GAEVKAEPVEVVAPRGKSGAALSKKSKGQV K A E P R G 2 1 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 10 0 1065.5819 P09874 P09874 487 496 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0018511 107.69 By matching By MS/MS By MS/MS 1.86 0.833 3 2 2 1 3 3 617530000 3192100 237500000 376840000 348 492 363 1436;1437;1438;1439;1440;1441;1442 1155;1156;1157;1158;1159;1160;1161 1160 7 3192100 107520000 80670000 AEPWLSQPASGSAYATPGAYGDIRPSAASWVGSR EDAPLRARPAAASPRAEPWLSQPASGSAYA YGDIRPSAASWVGSRGLAYPARPAQLRRRA R A E S R G 7 2 0 1 0 1 1 4 0 1 1 0 0 0 4 6 1 2 2 1 0 0 34 1 3462.6593 Q8NC56 Q8NC56 85 118 LEMD2 LEM domain-containing protein 2 yes yes 3;4 2.8841E-63 143.82 By MS/MS By MS/MS 4 0 2 1 1 34129000 0 23733000 10396000 349 1631 364 1443;1444 1162;1163 1162 2 0 7876200 1698000 AEPYCSVLPGFTFIQHLPLSER VLVKNCAVEFNFGQRAEPYCSVLPGFTFIQ LPGFTFIQHLPLSERIRGTVGPKSKAECEI R A E E R I 1 1 0 0 1 1 2 1 1 1 3 0 0 2 3 2 1 0 1 1 0 0 22 0 2560.2784 Q9BUJ2 Q9BUJ2 387 408 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 3 0.0030016 49.902 By MS/MS 2.5 0.5 1 1 2 6908000 0 0 6908000 350 1907 365 1445;1446 1164 1164 1 0 0 1351500 AEQDEAEKLQR ______________________________ LLAKAEQDEAEKLQRITVHKELELQFDLGN K A E Q R I 2 1 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1315.6368 Q15050 Q15050 13 23 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 3 0.0066481 79.201 By MS/MS By MS/MS 5 0 2 1 1 6360700 0 2846600 3514100 351 1337 366 1447;1448 1165;1166 1166 2 0 733770 490160 AEQEIAALVEQLTPIER EEAGRPGAEDEEMSRAEQEIAALVEQLTPI QEIAALVEQLTPIERYAMKFLEASLEEVSR R A E E R Y 3 1 0 0 0 2 4 0 0 2 2 0 0 0 1 0 1 0 0 1 0 0 17 0 1909.0157 Q6ZRS2 Q6ZRS2 2298 2314 SRCAP Helicase SRCAP yes yes 3 0.0026671 65.175 By MS/MS 1 0 1 1 1884900 0 0 1884900 352 1509 367 1449 1167 1167 1 0 0 406130 AEQEIMK ERTITVKGAIENCCRAEQEIMKKVREAYEN GAIENCCRAEQEIMKKVREAYENDVAAMSL R A E M K K 1 0 0 0 0 1 2 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 7 0 847.41095 Q9NZI8 Q9NZI8 339 345 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.030881 91.9 By MS/MS By MS/MS 3 0 2 1 1 8627100 0 1655100 6971900 353 2104 368 1450;1451 1168;1169 1169 2 0 705580 1352200 AEQEPTAEQLAQIAAENEEDEHSVNYKPPAQK ______________________________ EEDEHSVNYKPPAQKSIQEIQELDKDDESL M A E Q K S 6 0 2 1 0 4 7 0 1 1 1 2 0 0 3 1 1 0 1 1 0 0 32 1 3563.6652 P52565 P52565 2 33 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 3 2.1705E-06 52.669 By MS/MS 7 0 1 1 7817600 0 0 7817600 354 909 369 1452 1170 1170 1 0 0 1387200 AEQISPFFPLVSAHLSSAMTHITEGIQEDSLK LAAVQLLQFLAPKIRAEQISPFFPLVSAHL AMTHITEGIQEDSLKVLDILLEQYPALITG R A E L K V 3 0 0 1 0 2 3 1 2 3 3 1 1 2 2 5 2 0 0 1 0 0 32 0 3482.7392 Q9NXF1 Q9NXF1 131 162 TEX10 Testis-expressed sequence 10 protein yes yes 4 5.1952E-21 99.515 By MS/MS 2.5 0.5 1 1 2 8682800 0 0 8682800 355 2089 370 1453;1454 1171 1171 1 0 0 1796100 AEQLAAEAER PGQSGMDDMKLLEQRAEQLAAEAERDQPLR LLEQRAEQLAAEAERDQPLRAQSKILFVRS R A E E R D 4 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1086.5306 Q9HCS7 Q9HCS7 776 785 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.018345 83.948 By MS/MS 3 0 1 1 8676100 0 0 8676100 356 2014 371 1455 1172 1172 1 0 0 1682800 AEQLGAEGNVDESQK KVHELNEEIGKLLAKAEQLGAEGNVDESQK AEQLGAEGNVDESQKILMEVEKVRAKKKEA K A E Q K I 2 0 1 1 0 2 3 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 15 0 1573.722 Q9NQ29 Q9NQ29 140 154 LUC7L Putative RNA-binding protein Luc7-like 1 yes yes 2 6.9897E-12 182.23 By MS/MS 5 0.816 1 1 1 3 44958000 0 0 44958000 357 2030 372 1456;1457;1458 1173 1173 1 0 0 6347700 AEQMFGEMEVWNAISER LENHEKMTSTTRYKKAEQMFGEMEVWNAIS QMFGEMEVWNAISERDRLEIYEDVLFFLSK K A E E R D 2 1 1 0 0 1 4 1 0 1 0 0 2 1 0 1 0 1 0 1 0 0 17 0 2025.8924 O75400 O75400 486 502 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 2.2071E-06 153.39 By MS/MS 2 0 1 1 1854500 0 0 1854500 358 258 373 1459 1174 1174 1 0 0 419090 AEQWNVNYVETSAK LEDKRQVSVEEAKNRAEQWNVNYVETSAKT RAEQWNVNYVETSAKTRANVDKVFFDLMRE R A E A K T 2 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 1 1 1 2 0 0 14 0 1637.7686 P11233 P11233 146 159 RALA Ras-related protein Ral-A yes yes 2 0.00044255 134.98 By MS/MS 6.5 0.5 1 1 2 40435000 0 0 40435000 359 521 374 1460;1461 1175 1175 1 0 0 6988400 AERPEDLNLPNAVITR ______________________________ ERPEDLNLPNAVITRIIKEALPDGVNISKE M A E T R I 2 2 2 1 0 0 2 0 0 1 2 0 0 0 2 0 1 0 0 1 0 0 16 1 1806.9588 Q9NRF9 Q9NRF9 2 17 POLE3 DNA polymerase epsilon subunit 3 yes yes 2 0.00021505 97.69 By MS/MS 7 0 1 1 2091500 0 0 2091500 360 2042 375 1462 1176 1176 1 0 0 371120 AESDWDTVTVLR ______________________________ ______________________________ M A E L R K 1 1 0 2 0 0 1 0 0 0 1 0 0 0 0 1 2 1 0 2 0 0 12 0 1390.6729 O60869 O60869 2 13 EDF1 Endothelial differentiation-related factor 1 yes yes 2 5.0975E-06 157.66 By MS/MS By MS/MS 8.4 1.02 1 2 1 1 1 4 18163000 2480600 0 15683000 361 237 376 1463;1464;1465;1466;1467 1177;1178 1178 1 2129700 0 2855700 AESGPDLR GGSHPRINTLGRMIRAESGPDLRYEVTSGG TLGRMIRAESGPDLRYEVTSGGGGTSRMYY R A E L R Y 1 1 0 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 8 0 843.40865 P15924 P15924 20 27 DSP Desmoplakin yes yes 2 0.033452 77.058 By matching By MS/MS 6.33 0.471 2 1 1 2 8448700 1231200 0 7217500 362 572 377 1468;1469;1470 1179 1179 1 1639300 0 1242200 AESLVFVQTDKPIYKPGQTVQFR PTQNFIKKKPIYITKAESLVFVQTDKPIYK TDKPIYKPGQTVQFRIFSVDVNFHPLNETV K A E F R I 1 1 0 1 0 3 1 1 0 1 1 2 0 2 2 1 2 0 1 3 0 0 23 2 2650.4119 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 125 147 yes yes 3;4 2.3288E-11 106.03 By MS/MS By MS/MS 7 0.894 4 2 4 4 6 79868000 0 13134000 66734000 + 363 30 378 1471;1472;1473;1474;1475;1476;1477;1478;1479;1480 1180;1181;1182;1183;1184 1181 5 0 5503600 10767000 AESSDKLYR ______________________________ ______________________________ M A E Y R V 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 9 1 1067.5247 P09874 P09874 2 10 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00015161 137.9 By MS/MS By matching 2 0.816 1 1 1 2 1 92500000 0 86755000 5745100 364 492 379 1481;1482;1483 1185 1185 1 0 39286000 1114300 AESSDKLYRVEYAK ______________________________ MAESSDKLYRVEYAKSGRASCKKCSESIPK M A E A K S 2 1 0 1 0 0 2 0 0 0 1 2 0 0 0 2 0 0 2 1 0 0 14 2 1657.8312 P09874 P09874 2 15 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 0.00014025 112.42 By MS/MS 2 0 1 1 10538000 0 10538000 0 365 492 380 1484 1186 1186 1 0 4745400 0 AESTESIGSSEK EMKKEKDTLRDKGKKAESTESIGSSEKTEK GKKAESTESIGSSEKTEKKEEVVKRDRIRN K A E E K T 1 0 0 0 0 0 3 1 0 1 0 1 0 0 0 4 1 0 0 0 0 0 12 0 1223.5517 Q9BZI7 Q9BZI7 407 418 UPF3B Regulator of nonsense transcripts 3B yes yes 2 0.010803 93.058 By matching By MS/MS 2.5 0.5 1 1 1 1 2827300 0 1599200 1228000 366 1943 381 1485;1486 1187 1187 1 0 720160 238180 AESTLQNSSSAVHTESNK CRRIIPPKMKNTSSKAESTLQNSSSAVHTE TLQNSSSAVHTESNKLQPKRTADAMNLSVD K A E N K L 2 0 2 0 0 1 2 0 1 0 1 1 0 0 0 5 2 0 0 1 0 0 18 0 1888.8763 Q9H967 Q9H967 105 122 WDR76 WD repeat-containing protein 76 yes yes 3 0.00027002 81.317 By MS/MS 3 0 1 1 3850100 0 0 3850100 367 1997 382 1487 1188 1188 1 0 0 746740 AETECQNTEYQQLLDIK QAQISALEEQLQQIRAETECQNTEYQQLLD TECQNTEYQQLLDIKIRLENEIQTYRSLLE R A E I K I 1 0 1 1 1 3 3 0 0 1 2 1 0 0 0 0 2 0 1 0 0 0 17 0 2081.9575 P13645;CON__P13645 P13645 423 439 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 0 347.46 By MS/MS By MS/MS 5.32 2.94 4 2 3 3 3 2 3 3 2 3 14 14 815330000 415030000 0 400300000 + 368 56 383 1488;1489;1490;1491;1492;1493;1494;1495;1496;1497;1498;1499;1500;1501;1502;1503;1504;1505;1506;1507;1508;1509;1510;1511;1512;1513;1514;1515 1189;1190;1191;1192;1193;1194;1195;1196;1197;1198;1199;1200;1201;1202;1203;1204;1205;1206;1207;1208;1209;1210;1211;1212;1213 1192 25 347310000 0 85366000 AETLASSLQEDLAHTR DIQDLLESVRLDKEKAETLASSLQEDLAHT ETLASSLQEDLAHTRNDANRLQDAIAKVED K A E T R N 3 1 0 1 0 1 2 0 1 0 3 0 0 0 0 2 2 0 0 0 0 0 16 0 1740.8642 Q69YQ0 Q69YQ0 619 634 SPECC1L Cytospin-A yes yes 3 1.1539E-05 109.35 By MS/MS By MS/MS 2 0 2 1 1 14527000 0 5133400 9393800 369 1469 384 1516;1517 1214;1215 1214 2 0 2311600 2122800 AETLEFNDVYQEVK ______________________________ MAETLEFNDVYQEVKGSMNDGRLRLSRQGI M A E V K G 1 0 1 1 0 1 3 0 0 0 1 1 0 1 0 0 1 0 1 2 0 0 14 0 1683.7992 Q08945 Q08945 2 15 SSRP1 FACT complex subunit SSRP1 yes yes 2 4.8009E-25 199.08 By MS/MS By MS/MS By MS/MS 4.25 2.68 2 2 3 2 1 1 1 1 5 6 156760000 8770300 22035000 125960000 370 1186 385 1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528;1529 1216;1217;1218;1219;1220;1221;1222;1223;1224;1225 1222 10 10119000 9812900 24699000 AETLMTVTDPVHDIAFAPNLGR VQIFEYNENTRKYAKAETLMTVTDPVHDIA TDPVHDIAFAPNLGRSFHILAIATKDVRIF K A E G R S 3 1 1 2 0 0 1 1 1 1 2 0 1 1 2 0 3 0 0 2 0 0 22 0 2367.1893 Q96EE3 Q96EE3 212 233 SEH1L Nucleoporin SEH1 yes yes 3 0.011148 40.369 By MS/MS 6 0 1 1 3957200 0 3957200 0 371 1773 386 1530 1226 1226 1 0 1369800 0 AETLPGSGDSGPGTASLGPGVAETGTR ______________________________ GTASLGPGVAETGTRRLSELRVIDLRAELK M A E T R R 3 1 0 1 0 0 2 7 0 0 2 0 0 0 3 3 4 0 0 1 0 0 27 0 2441.167 Q14151 Q14151 2 28 SAFB2 Scaffold attachment factor B2 yes yes 3 1.2136E-26 114.21 By matching By MS/MS 1.5 0.5 1 1 1 1 10344000 0 2147100 8196800 372 1285 387 1531;1532 1227 1227 1 0 1049500 1852300 AETLPGSGDSGPGTASLGPGVAETGTRR ______________________________ TASLGPGVAETGTRRLSELRVIDLRAELKK M A E R R L 3 2 0 1 0 0 2 7 0 0 2 0 0 0 3 3 4 0 0 1 0 0 28 1 2597.2681 Q14151 Q14151 2 29 SAFB2 Scaffold attachment factor B2 yes yes 3 4.3683E-27 117.36 By MS/MS 2 0 1 1 9571500 0 9571500 0 373 1285 388 1533 1228 1228 1 0 4310200 0 AETLSGLGDSGAAGAAALSSASSETGTR ______________________________ GAAALSSASSETGTRRLSDLRVIDLRAELR M A E T R R 7 1 0 1 0 0 2 5 0 0 3 0 0 0 0 6 3 0 0 0 0 0 28 0 2494.1783 Q15424 Q15424 2 29 SAFB Scaffold attachment factor B1 yes yes 2;3 0 393.23 By MS/MS By MS/MS 3 2.21 2 4 1 2 3 6 109180000 0 23223000 85960000 374 1364 389 1534;1535;1536;1537;1538;1539;1540;1541;1542 1229;1230;1231;1232;1233;1234;1235;1236 1230 8 0 10603000 18425000 AETLSGLGDSGAAGAAALSSASSETGTRR ______________________________ AAALSSASSETGTRRLSDLRVIDLRAELRK M A E R R L 7 2 0 1 0 0 2 5 0 0 3 0 0 0 0 6 3 0 0 0 0 0 29 1 2650.2794 Q15424 Q15424 2 30 SAFB Scaffold attachment factor B1 yes yes 3 4.9282E-85 218.86 By MS/MS 4.5 2.5 1 1 2 41181000 0 41181000 0 375 1364 390 1543;1544 1237;1238 1237 2 0 18854000 0 AETNDSYHIILK QNFQEEACFILDTMKAETNDSYHIILK___ TMKAETNDSYHIILK_______________ K A E L K - 1 0 1 1 0 0 1 0 1 2 1 1 0 0 0 1 1 0 1 0 0 0 12 0 1402.7092 Q12800 Q12800 491 502 TFCP2 Alpha-globin transcription factor CP2 yes yes 2;3 0.00015062 135.86 By matching By MS/MS By MS/MS 3.67 0.471 2 4 1 2 3 71149000 3249300 24733000 43167000 376 1200 391 1545;1546;1547;1548;1549;1550 1239;1240;1241;1242 1239 4 3749000 8208000 7326300 AETPTAAEDDNEGDKK KVTVDTGVIPASEEKAETPTAAEDDNEGDK ETPTAAEDDNEGDKKKKDKKKKKGEKEEKE K A E K K K 3 0 1 3 0 0 3 1 0 0 0 2 0 0 1 0 2 0 0 0 0 0 16 1 1689.733 O60841 O60841 299 314 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.0061539 58.159 By MS/MS 3.5 0.5 1 1 2 3466000 0 0 3466000 377 236 392 1551;1552 1243 1243 1 0 0 667410 AETSEGSGSAPAVPEASASPK QPSAHHSAEPAEAGKAETSEGSGSAPAVPE SGSAPAVPEASASPKQRRSIIRDRGPMYDD K A E P K Q 5 0 0 0 0 0 3 2 0 0 0 1 0 0 3 5 1 0 0 1 0 0 21 0 1928.8963 P51608 P51608 62 82 MECP2 Methyl-CpG-binding protein 2 yes yes 2 3.1115E-07 100.4 By MS/MS 3 0 1 1 12696000 0 0 12696000 378 896 393 1553 1244 1244 1 0 0 2462400 AEVAPEEDER SVTVSDRPLGVSITKAEVAPEEDERKKRRR VSITKAEVAPEEDERKKRRRERNKIAAAKC K A E E R K 2 1 0 1 0 0 4 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 10 0 1143.5044 P18847 P18847 79 88 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes yes 2 0.00060622 130.31 By MS/MS 7 0 1 1 5891100 0 0 5891100 379 602 394 1554 1245 1245 1 0 0 1045300 AEVEETLKR ______________________________ ______________________________ M A E K R L 1 1 0 0 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 1 1073.5717 Q9NP97;Q8TF09 Q9NP97 2 10 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 yes no 2 1.8231E-11 168.23 By matching By MS/MS 10 0 2 1 1 28226000 0 13274000 14952000 380 2022 395 1555;1556 1246 1246 1 0 67156000 32701000 AEVEGKDLPEHAVLK VCPKDEDYKQRTQKKAEVEGKDLPEHAVLK AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K A E L K M 2 0 0 1 0 0 3 1 1 0 2 2 0 0 1 0 0 0 0 2 0 0 15 1 1633.8675 Q00839 Q00839 621 635 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 0.026199 51.466 By MS/MS 2 0 1 1 12036000 0 12036000 0 381 1127 396 1557 1247 1247 1 0 5419800 0 AEVEVADELLENLAK SAADLSMLVLESLEKAEVEVADELLENLAK AEVEVADELLENLAKVFSLMDPNSPERVTF K A E A K V 3 0 1 1 0 0 4 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 15 0 1641.8461 Q7L5D6 Q7L5D6 96 110 GET4 Golgi to ER traffic protein 4 homolog yes yes 2 0.00058399 106.01 By MS/MS 6 0 1 1 3402800 0 0 3402800 382 1525 397 1558 1248 1248 1 0 0 509100 AEVIMNYHVGETVLSLQK KALWDRGLLNGASQKAEVIMNYHVGETVLS IMNYHVGETVLSLQKTTLIPGGSESLVYTT K A E Q K T 1 0 1 0 0 1 2 1 1 1 2 1 1 0 0 1 1 0 1 3 0 0 18 0 2030.0507 Q15393 Q15393 1089 1106 SF3B3 Splicing factor 3B subunit 3 yes yes 3 0.0031832 60.564 By MS/MS 2 0 1 1 6187200 0 6187200 0 383 1361 398 1559 1249 1249 1 0 2786200 0 AEVKFEGDTLVNR ERTIFFKDDGNYKTRAEVKFEGDTLVNRIE TRAEVKFEGDTLVNRIELKGIDFKEDGNIL R A E N R I 1 1 1 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 0 2 0 0 13 1 1476.7573 CON__Q9U6Y5 CON__Q9U6Y5 110 122 yes yes 2;3 1.45E-23 196.11 By MS/MS By MS/MS 5.67 0.943 1 5 3 3 6 6 360880000 0 183310000 177570000 + 384 101 399 1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571 1250;1251;1252;1253;1254;1255;1256;1257;1258;1259;1260;1261 1254 12 0 52648000 25430000 AEVLSPVVSVFVPPR KGGKTVGTVRVIATKAEVLSPVVSVFVPPR AEVLSPVVSVFVPPRNSLSGDGNSKSSLIC K A E P R N 1 1 0 0 0 0 1 0 0 0 1 0 0 1 3 2 0 0 0 5 0 0 15 0 1594.9083 CON__Q1RMK2 CON__Q1RMK2 252 266 yes yes 2 0.00080987 99.215 By matching By MS/MS 3 0 2 1 1 6292100 1672800 0 4619300 + 385 76 400 1572;1573 1262 1262 1 1930100 0 895920 AEVLWLMGAK SLEALLQRAVAHCPKAEVLWLMGAKSKWLA AHCPKAEVLWLMGAKSKWLAGDVPAARSIL K A E A K S 2 0 0 0 0 0 1 1 0 0 2 1 1 0 0 0 0 1 0 1 0 0 10 0 1116.6002 O94906 O94906 607 616 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.051291 72.485 By MS/MS 2 0 1 1 3817400 0 3817400 0 386 305 401 1574 1263 1263 1 0 1719000 0 AEVPGATGGDSPHLQPAEPPGEPR ______________________________ DSPHLQPAEPPGEPRREPHPAEAEKQQPQH K A E P R R 3 1 0 1 0 1 3 4 1 0 1 0 0 0 6 1 1 0 0 1 0 0 24 0 2365.1299 Q9P2K5 Q9P2K5 7 30 MYEF2 Myelin expression factor 2 yes yes 3 1.4894E-06 78.236 By MS/MS 4 0 1 1 9210400 0 0 9210400 387 2125 402 1575 1264 1264 1 0 0 1504400 AEVQNLGGELVVSGVDSAMSLIQAAK IALYCHQLNICSKVKAEVQNLGGELVVSGV VSGVDSAMSLIQAAKNLMNAVVQTVKASYV K A E A K N 4 0 1 1 0 2 2 3 0 1 3 1 1 0 0 3 0 0 0 4 0 0 26 0 2585.3371 P35221 P35221 798 823 CTNNA1 Catenin alpha-1 yes yes 3 5.7288E-09 87.196 By MS/MS 2 0 1 1 10200000 0 0 10200000 388 739 403 1576 1265 1265 1 0 0 2305100 AEVQVLVLDGR ______________________________ ______________________________ M A E G R G 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 11 0 1197.6717 P40429 P40429 2 12 RPL13A 60S ribosomal protein L13a yes yes 2 0.00015838 121.83 By MS/MS By MS/MS 7.6 2.24 1 2 2 3 2 29752000 0 10975000 18776000 389 784 404 1577;1578;1579;1580;1581 1266;1267;1268;1269 1269 4 0 13385000 7275400 AEVTMGDPHQQTLAR SLEEFYKEAPPDISKAEVTMGDPHQQTLAR AEVTMGDPHQQTLARLDWELEQRKRLAEKY K A E A R L 2 1 0 1 0 2 1 1 1 0 1 0 1 0 1 0 2 0 0 1 0 0 15 0 1652.7941 Q13769 Q13769 176 190 THOC5 THO complex subunit 5 homolog yes yes 2;3 0.0014139 95.094 By matching By MS/MS By MS/MS 2.5 0.5 2 2 1 2 1 32678000 2960100 3666600 26051000 390 1267 405 1582;1583;1584;1585 1270;1271 1270 2 3566500 1610100 5052800 AEWQVYK ELPDSKKKIYQDAYRAEWQVYKEEISRFKE KIYQDAYRAEWQVYKEEISRFKEQLTPSQI R A E Y K E 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 1 1 0 0 7 0 922.45487 Q00059 Q00059 105 111 TFAM Transcription factor A, mitochondrial yes yes 2 0.044859 78.616 By MS/MS By MS/MS 7 0 2 1 1 95526000 0 10050000 85476000 391 1120 406 1586;1587 1272;1273 1272 2 0 5771000 15167000 AEWQVYKEEISR ELPDSKKKIYQDAYRAEWQVYKEEISRFKE AYRAEWQVYKEEISRFKEQLTPSQIMSLEK R A E S R F 1 1 0 0 0 1 3 0 0 1 0 1 0 0 0 1 0 1 1 1 0 0 12 1 1536.7573 Q00059 Q00059 105 116 TFAM Transcription factor A, mitochondrial yes yes 2;3 5.7478E-08 173.64 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 229910000 0 15967000 213940000 392 1120 407 1588;1589;1590;1591;1592 1274;1275;1276;1277;1278 1277 5 0 9168300 37762000 AEYFDGSEPVQNR ALRLLRKATALPARRAEYFDGSEPVQNRVY RRAEYFDGSEPVQNRVYKSLKVWSMLADLE R A E N R V 1 1 1 1 0 1 2 1 0 0 0 0 0 1 1 1 0 0 1 1 0 0 13 0 1510.6688 Q9HCS7 Q9HCS7 467 479 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.00045069 83.438 By MS/MS 2 0 1 1 0 0 0 0 393 2014 408 1593 1279 1279 1 0 0 0 AEYLASIFGTEK ______________________________ ______________________________ M A E E K D 2 0 0 0 0 0 2 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 12 0 1327.666 P0DN76;Q01081;Q8WU68 P0DN76 2 13 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 2 1.3875E-25 199.11 By MS/MS By MS/MS 5.09 2.54 1 1 1 2 1 2 1 1 1 4 7 41317000 0 8646900 32670000 394 502 409 1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604 1280;1281;1282;1283;1284;1285;1286;1287;1288 1287 9 0 3011500 5195600 AFAVVASALGIPSLLPFLK DIDNMDEYVRNTTARAFAVVASALGIPSLL VASALGIPSLLPFLKAVCKSKKSWQARHTG R A F L K A 4 0 0 0 0 0 0 1 0 1 4 1 0 2 2 2 0 0 0 2 0 0 19 0 1913.139 O75533 O75533 631 649 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 7.0512E-09 124.38 By MS/MS 1.8 0.748 2 2 1 5 60139000 0 0 60139000 395 270 410 1605;1606;1607;1608;1609 1289;1290;1291;1292 1291 4 0 0 13543000 AFDHVLHLRPLSR DGFHLLLMTPKPMIRAFDHVLHLRPLSRLQ IRAFDHVLHLRPLSRLQAACHRLKLWPELQ R A F S R L 1 2 0 1 0 0 0 0 2 0 3 0 0 1 1 1 0 0 0 1 0 0 13 1 1559.8685 Q9H6R4 Q9H6R4 469 481 NOL6 Nucleolar protein 6 yes yes 3 0.010119 70.563 By MS/MS 2 0 1 1 8148100 0 0 8148100 396 1988 411 1610 1293 1293 1 0 0 1841300 AFDLFNPNFK RIRAKFYSVYGSGQRAFDLFNPNFKSTCQR GSGQRAFDLFNPNFKSTCQRFVEKYTELQK R A F F K S 1 0 2 1 0 0 0 0 0 0 1 1 0 3 1 0 0 0 0 0 0 0 10 0 1211.5975 Q9Y3D9 Q9Y3D9 84 93 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 2 0.00060751 133.12 By MS/MS By MS/MS 7 0 2 1 1 33526000 0 9311500 24215000 397 2272 412 1611;1612 1294;1295 1295 2 0 5346700 4296800 AFDLIVDRPVTLVR RRTPVQPNPIVYMMKAFDLIVDRPVTLVRE KAFDLIVDRPVTLVREFIERQHAKNRYYYY K A F V R E 1 2 0 2 0 0 0 0 0 1 2 0 0 1 1 0 1 0 0 3 0 0 14 1 1612.9301 O96000 O96000 30 43 NDUFB10 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 yes yes 3 0.00016987 114.56 By matching By MS/MS 7 0 2 1 1 6813200 0 298640 6514500 398 352 413 1613;1614 1296 1296 1 0 171480 1156000 AFEDEMSGR GKDLTSVMRLLSKHRAFEDEMSGRSGHFEQ LLSKHRAFEDEMSGRSGHFEQAIKEGEDMI R A F G R S 1 1 0 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 9 0 1040.4233 Q01082 Q01082 682 690 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.052039 70.919 By MS/MS 1 0 1 1 6930700 0 6930700 0 399 1128 414 1615 1297 1297 1 0 3387600 0 AFEEDQVAGR LEQLRQQEEEKAEARAFEEDQVAGRLKEDV KAEARAFEEDQVAGRLKEDVLEQRGRLQKL R A F G R L 2 1 0 1 0 1 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1120.5149 O43818 O43818 102 111 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.00035554 124.98 By MS/MS 4 0.816 1 1 1 3 16600000 0 0 16600000 400 214 415 1616;1617;1618 1298 1298 1 0 0 2742000 AFENLLGQALTK AQSNPYYNGPHLNLKAFENLLGQALTKALE NLKAFENLLGQALTKALEDSSFLKRSGRDS K A F T K A 2 0 1 0 0 1 1 1 0 0 3 1 0 1 0 0 1 0 0 0 0 0 12 0 1303.7136 Q8WWI1 Q8WWI1 195 206 LMO7 LIM domain only protein 7 yes yes 2 0.059994 70.488 By MS/MS 2 0 1 1 2577500 0 2577500 0 401 1687 416 1619 1299 1299 1 0 1160700 0 AFEPYLEILEVYSTK ______________________________ AFEPYLEILEVYSTKAKNYVNGHCTKYEPW K A F T K A 1 0 0 0 0 0 3 0 0 1 2 1 0 1 1 1 1 0 2 1 0 0 15 0 1800.9186 O95470 O95470 11 25 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 2 0.0015461 94.191 By MS/MS 4 0 1 1 4886900 0 0 4886900 402 328 417 1620 1300 1300 1 0 0 798190 AFFSEVER RDPSKQYGLKMKTSRAFFSEVERRFDAMPF LKMKTSRAFFSEVERRFDAMPFTLRAFEDE R A F E R R 1 1 0 0 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 8 0 983.47125 Q9UQ80 Q9UQ80 264 271 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.00020589 139.28 By MS/MS By MS/MS By MS/MS 4.75 1.39 1 2 3 1 1 1 3 4 213450000 0 35184000 178260000 403 2220 418 1621;1622;1623;1624;1625;1626;1627;1628 1301;1302;1303;1304 1304 4 0 9555800 25597000 AFGPGLEGGLVNK FRVGVTEGCDPTRVRAFGPGLEGGLVNKAN VRAFGPGLEGGLVNKANRFTVETRGAGTGG R A F N K A 1 0 1 0 0 0 1 4 0 0 2 1 0 1 1 0 0 0 0 1 0 0 13 0 1257.6717 Q14315 Q14315 1355 1367 FLNC Filamin-C yes yes 2 0.0063609 96.618 By MS/MS 1 0 1 1 25487000 0 25487000 0 404 1298 419 1629 1305 1305 1 0 12458000 0 AFGPGLQGGSAGSPAR FPLEAVAPTKPSKVKAFGPGLQGGSAGSPA FGPGLQGGSAGSPARFTIDTKGAGTGGLGL K A F A R F 3 1 0 0 0 1 0 5 0 0 1 0 0 1 2 2 0 0 0 0 0 0 16 0 1428.711 P21333 P21333 1072 1087 FLNA Filamin-A yes yes 2 3.5398E-05 124.12 By MS/MS By MS/MS 1 0 2 1 1 64531000 0 38090000 26441000 405 623 420 1630;1631 1306;1307 1306 2 0 18618000 5697100 AFGYYGPLR VGNLGNNGNKTELERAFGYYGPLRSVWVAR KTELERAFGYYGPLRSVWVARNPPGFAFVE R A F L R S 1 1 0 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 2 0 0 0 9 0 1042.5236 P84103 P84103 29 37 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 4.4253E-07 155.19 By MS/MS By MS/MS By MS/MS 6.57 2.56 1 2 1 1 4 1 2 2 1 9 4 1198700000 42145000 559590000 596980000 406 1113 421 1632;1633;1634;1635;1636;1637;1638;1639;1640;1641;1642;1643;1644;1645 1308;1309;1310;1311;1312;1313;1314;1315;1316;1317;1318;1319;1320 1311 13 90831000 443440000 178480000 AFHPFIAGPYNR AEQDKRAVERLEVEKAFHPFIAGPYNRLVG VEKAFHPFIAGPYNRLVGEIMQETGTRINI K A F N R L 2 1 1 0 0 0 0 1 1 1 0 0 0 2 2 0 0 0 1 0 0 0 12 0 1388.699 Q00341 Q00341 232 243 HDLBP Vigilin yes yes 2;3 0.0174 74.301 By MS/MS 1.67 0.471 1 2 3 8205200 0 8205200 0 407 1122 422 1646;1647;1648 1321;1322 1321 2 0 3724900 0 AFIGFEGVK VIDQDMATRLKPAQKAFIGFEGVKGKKKMS LKPAQKAFIGFEGVKGKKKMSAAEAVKEKW K A F V K G 1 0 0 0 0 0 1 2 0 1 0 1 0 2 0 0 0 0 0 1 0 0 9 0 966.51747 P15924 P15924 2694 2702 DSP Desmoplakin yes yes 2 0.007052 93.374 By MS/MS By MS/MS 1 0 2 1 1 26987000 0 11336000 15651000 408 572 423 1649;1650 1323;1324 1323 2 0 5540800 3372300 AFIPAIDSFGFETDLR TQDAPIPGSPLYTIKAFIPAIDSFGFETDL FIPAIDSFGFETDLRTHTQGQAFSLSVFHH K A F L R T 2 1 0 2 0 0 1 1 0 2 1 0 0 3 1 1 1 0 0 0 0 0 16 0 1797.8938 Q15029 Q15029 873 888 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 1.8257E-05 138.75 By MS/MS By MS/MS 2 0 2 1 1 3164600 0 2344800 819760 409 1335 424 1651;1652 1325;1326 1326 2 0 1055900 185250 AFITNIPFDVK GNRFEPYANPTKRYRAFITNIPFDVKWQSL KRYRAFITNIPFDVKWQSLKDLVKEKVGEV R A F V K W 1 0 1 1 0 0 0 0 0 2 0 1 0 2 1 0 1 0 0 1 0 0 11 0 1263.6863 P52272 P52272 73 83 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 7.2692E-14 182.4 By matching By MS/MS By MS/MS 5.3 2.76 2 2 2 2 3 2 2 2 1 2 1 10 9 968420000 935620 382810000 584680000 410 902 425 1653;1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672 1327;1328;1329;1330;1331;1332;1333;1334;1335;1336;1337;1338;1339;1340;1341;1342;1343;1344 1329 18 749550 162480000 117580000 AFLADPSAFVAAAPVAAATTAAPAAAAAPAK SVETDYTFPLAEKVKAFLADPSAFVAAAPV AATTAAPAAAAAPAKVEAKEESEESDEDMG K A F A K V 17 0 0 1 0 0 0 0 0 0 1 1 0 2 4 1 2 0 0 2 0 0 31 0 2751.4596 P05388 P05388 267 297 RPLP0 60S acidic ribosomal protein P0 yes yes 2;3;4 2.8113E-59 175.56 By MS/MS By MS/MS 5.8 2.07 1 1 2 2 5 1 1 1 1 8 7 469010000 0 145570000 323440000 411 432 426 1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687 1345;1346;1347;1348;1349;1350;1351;1352;1353;1354;1355;1356 1350 12 0 50724000 50735000 AFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAK SVETDYTFPLAEKVKAFLADPSAFVAAAPV AAPAAAAAPAKVEAKEESEESDEDMGFGLF K A F A K E 18 0 0 1 0 0 1 0 0 0 1 2 0 2 4 1 2 0 0 3 0 0 35 1 3178.7026 P05388 P05388 267 301 RPLP0 60S acidic ribosomal protein P0 yes yes 3 6.2341E-22 88.242 By MS/MS 6 0 1 1 5623500 0 5623500 0 412 432 427 1688 1357 1357 1 0 1946700 0 AFLASGPYLTHQQK ______________________________ MAFLASGPYLTHQQKVLRLYKRALRHLESW M A F Q K V 2 0 0 0 0 2 0 1 1 0 2 1 0 1 1 1 1 0 1 0 0 0 14 0 1559.8096 Q9Y6M9 Q9Y6M9 2 15 NDUFB9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 yes yes 2 1.0098E-11 179.42 By MS/MS By MS/MS 7 0 2 1 1 14636000 0 3024400 11612000 413 2316 428 1689;1690 1358;1359 1359 2 0 1736600 2060400 AFLDNPTIILAHIR ______________________________ MAFLDNPTIILAHIRQSHVTSDDTGMCEMV M A F I R Q 2 1 1 1 0 0 0 0 1 3 2 0 0 1 1 0 1 0 0 0 0 0 14 0 1592.9039 Q9BPZ7 Q9BPZ7 2 15 MAPKAP1 Target of rapamycin complex 2 subunit MAPKAP1 yes yes 2 1.9353E-17 187.97 By matching By MS/MS By MS/MS 3.67 0.471 1 2 1 1 1 8238500 506300 1759600 5972500 414 1875 429 1691;1692;1693 1360;1361 1361 2 395000 583950 1158400 AFLEILHTYQK NKIKNRFQGQPDIYKAFLEILHTYQKEQRN DIYKAFLEILHTYQKEQRNAKEAGGNYTPA K A F Q K E 1 0 0 0 0 1 1 0 1 1 2 1 0 1 0 0 1 0 1 0 0 0 11 0 1361.7343 Q96ST3 Q96ST3 327 337 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.01177 70.412 By MS/MS 1.5 0.5 1 1 2 6707000 0 0 6707000 415 1836 430 1694;1695 1362 1362 1 0 0 1496800 AFLGQVLVR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT AVPLARAFLGQVLVRRLPNGTELRGRIVET R A F V R R 1 1 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 2 0 0 9 0 1001.6022 P29372 P29372 101 109 MPG DNA-3-methyladenine glycosylase yes yes 2 3.087E-05 150.02 By MS/MS By MS/MS By MS/MS 6.4 0.49 3 2 1 2 2 77707000 3443700 20612000 53652000 416 698 431 1696;1697;1698;1699;1700 1363;1364;1365;1366;1367 1364 5 4585400 7482700 8174700 AFLIEEQK GGSMCAKCVRDRIKRAFLIEEQKIVVKVLK VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA R A F Q K I 1 0 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 976.52295 P49207 P49207 94 101 RPL34 60S ribosomal protein L34 yes yes 2 4.8888E-06 158.08 By MS/MS By MS/MS 7.17 1.57 1 1 2 1 1 5 1 376430000 0 335820000 40604000 417 850 432 1701;1702;1703;1704;1705;1706 1368;1369;1370;1371 1369 4 0 1444900000 7204900 AFLISLLNLFDDTAK SHLYSMIRGNRQHRRAFLISLLNLFDDTAK AFLISLLNLFDDTAKTDVTMLLYIADNLAC R A F A K T 2 0 1 2 0 0 0 0 0 1 4 1 0 2 0 1 1 0 0 0 0 0 15 0 1679.9134 Q6KC79 Q6KC79 2408 2422 NIPBL Nipped-B-like protein yes yes 2 1.1164E-09 103.91 By MS/MS 2 0 1 1 0 0 0 0 418 1480 433 1707 1372 1372 1 0 0 0 AFLLESLLK KHNVHSPYKCTICGKAFLLESLLKNHVAAH CTICGKAFLLESLLKNHVAAHGQSLLKCPR K A F L K N 1 0 0 0 0 0 1 0 0 0 4 1 0 1 0 1 0 0 0 0 0 0 9 0 1032.6219 Q96JM3 Q96JM3 746 754 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.013069 86.794 By MS/MS 2 0 1 1 3716500 0 3716500 0 419 1801 434 1708 1373 1373 1 0 1673600 0 AFLNAIMR GGNIEVLGFNARQRKAFLNAIMRYGMPPQD FNARQRKAFLNAIMRYGMPPQDAFTTQWLV K A F M R Y 2 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 8 0 934.50586 Q14839;Q8TDI0 Q14839 1423 1430 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.00011112 146.21 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 37732000 2128900 13349000 22254000 420 1321;1662 435 1709;1710;1711;1712;1713;1714 1374;1375;1376;1377 1374 4 2128900 6460100 4782600 AFLTLAEDILR RFFETSAKANINIEKAFLTLAEDILRKTPV NIEKAFLTLAEDILRKTPVKEPNSENVDIS K A F L R K 2 1 0 1 0 0 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1260.7078 P61026 P61026 162 172 RAB10 Ras-related protein Rab-10 yes yes 2 0.00032805 128.36 By matching By MS/MS 6.67 0.471 1 2 2 1 4251300 703110 0 3548100 421 976 436 1715;1716;1717 1378 1378 1 1395000 0 629590 AFMGTPVQK MLTPKPAGGDEKDIKAFMGTPVQKLDLAGT DEKDIKAFMGTPVQKLDLAGTLPGSKRQLQ K A F Q K L 1 0 0 0 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 9 0 977.50044 P46013 P46013 1189 1197 MKI67 Antigen KI-67 yes no 2 0.0006802 114.6 By MS/MS 1.5 0.5 1 1 2 18913000 0 0 18913000 422 821 437 1718;1719 1379 1379 1 0 0 4132600 AFMTADLPNELIELLEK LSETQDPEEVSVTVKAFMTADLPNELIELL MTADLPNELIELLEKIVLDNSVFSEHRNLQ K A F E K I 2 0 1 1 0 0 3 0 0 1 4 1 1 1 1 0 1 0 0 0 0 0 17 0 1946.0071 Q00610;P53675 Q00610 994 1010 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 9.8044E-06 120.53 By MS/MS 1.5 0.5 3 3 6 122070000 0 0 122070000 423 1125 438;439 1720;1721;1722;1723;1724;1725 1380;1381;1382;1383;1384;1385 1380 533 6 0 0 27303000 AFMVTDEDIR KNPGVWLNTTQPLCKAFMVTDEDIRKQEEL QPLCKAFMVTDEDIRKQEELVQQVRKRLEE K A F I R K 1 1 0 2 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1195.5543 O95983 O95983 217 226 MBD3 Methyl-CpG-binding domain protein 3 yes yes 2 0.004302 99.442 By MS/MS 6 0 1 1 7472500 0 0 7472500 424 351 440 1726 1386 1386 1 0 0 1118000 AFPMPGFDEH QRLANLRQRVEQFARAFPMPGFDEH_____ EQFARAFPMPGFDEH_______________ R A F E H - 1 0 0 1 0 0 1 1 1 0 0 0 1 2 2 0 0 0 0 0 0 0 10 0 1146.4804 P34897 P34897 495 504 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.00032685 124.37 By MS/MS By matching By MS/MS 4 0.632 1 3 1 1 1 3 147440000 37424000 9893900 100120000 425 734 441 1727;1728;1729;1730;1731 1387;1388;1389;1390 1390 4 29197000 3283400 16278000 AFPVLLLDTVPWYLR KGELSTLLYNTHPYRAFPVLLLDTVPWYLR AFPVLLLDTVPWYLRLYVHTLTITSKGKEN R A F L R L 1 1 0 1 0 0 0 0 0 0 4 0 0 1 2 0 1 1 1 2 0 0 15 0 1802.0131 Q969N2 Q969N2 380 394 PIGT GPI transamidase component PIG-T yes yes 2 0.0018764 91.937 By MS/MS 3.5 0.5 1 1 2 3297400 0 0 3297400 426 1743 442 1732;1733 1391 1391 1 0 0 620030 AFPYGNVAFPHLPGSAPSWPSLVDTSK IESGHSSGYDSRSARAFPYGNVAFPHLPGS PGSAPSWPSLVDTSKQWDYYARREKDRDRE R A F S K Q 3 0 1 1 0 0 0 2 1 0 2 1 0 2 5 4 1 1 1 2 0 0 27 0 2841.4126 Q6UN15 Q6UN15 423 449 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 3 9.5747E-05 50.029 By MS/MS By MS/MS 3.5 1.89 1 1 2 2 4 2 19852000 0 7468100 12384000 427 1503 443 1734;1735;1736;1737;1738;1739 1392;1393;1394 1394 3 0 3071200 2324900 AFSAVDTDGNGTINAQELGAALK MAGELTPEEEAQYKKAFSAVDTDGNGTINA GNGTINAQELGAALKATGKNLSEAQLRKLI K A F L K A 5 0 2 2 0 1 1 3 0 1 2 1 0 1 0 1 2 0 0 1 0 0 23 0 2262.1128 Q9NZT1 Q9NZT1 16 38 CALML5 Calmodulin-like protein 5 yes yes 2;3 0 342.38 By MS/MS By MS/MS By MS/MS 6.46 2.9 2 2 2 2 1 3 4 3 4 5 19 1 8 341450000 300150000 842090 40464000 428 2107 444 1740;1741;1742;1743;1744;1745;1746;1747;1748;1749;1750;1751;1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763;1764;1765;1766;1767 1395;1396;1397;1398;1399;1400;1401;1402;1403;1404;1405;1406;1407;1408;1409;1410;1411;1412;1413;1414;1415;1416 1409 22 291620000 4260300 15618000 AFSQFVR HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YRTLTNYKAFSQFVRPLIAAKNPKIAVSKM K A F V R P 1 1 0 0 0 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 7 0 853.44464 Q14839 Q14839 180 186 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.024198 97.596 By MS/MS By matching 1.5 0.5 1 1 1 1 4093500 0 2833700 1259700 429 1321 445 1768;1769 1417 1417 1 0 1385100 284680 AFSQFVRPLIAAK HVFSEEDYRTLTNYKAFSQFVRPLIAAKNP YKAFSQFVRPLIAAKNPKIAVSKMMMVLGA K A F A K N 3 1 0 0 0 1 0 0 0 1 1 1 0 2 1 1 0 0 0 1 0 0 13 1 1446.8347 Q14839 Q14839 180 192 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2;3 0.0013145 121.29 By MS/MS By MS/MS 1 0 3 1 2 37433000 0 6932000 30501000 430 1321 446 1770;1771;1772 1418;1419;1420 1418 3 0 3388300 6571900 AFSWASVTSK PPPAEPVSLPQEPPKAFSWASVTSKNLPPS QEPPKAFSWASVTSKNLPPSGTVSSSGIPP K A F S K N 2 0 0 0 0 0 0 0 0 0 0 1 0 1 0 3 1 1 0 1 0 0 10 0 1082.5397 Q9UN86 Q9UN86 243 252 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2 0.0057749 96.253 By MS/MS By MS/MS 6.86 1.55 1 2 1 2 1 4 3 496360000 0 231640000 264710000 431 2203 447 1773;1774;1775;1776;1777;1778;1779 1421;1422;1423;1424;1425 1422 4 0 84280000 41148000 AFSYYGPLR VGNLGTGAGKGELERAFSYYGPLRTVWIAR KGELERAFSYYGPLRTVWIARNPPGFAFVE R A F L R T 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 0 0 2 0 0 0 9 0 1072.5342 Q16629 Q16629 30 38 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2 1.4309E-23 191.03 By MS/MS By MS/MS By MS/MS 6.5 2.26 1 1 2 3 2 2 2 1 2 7 5 566750000 27295000 223280000 316180000 432 1392 448 1780;1781;1782;1783;1784;1785;1786;1787;1788;1789;1790;1791;1792;1793 1426;1427;1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438 1431 12 36344000 81447000 58327000 AFTMDCITLEGDQVSHR TLICRSMEVSTQLARAFTMDCITLEGDQVS TMDCITLEGDQVSHRGALTGGYYDTRKSRL R A F H R G 1 1 0 2 1 1 1 1 1 1 1 0 1 1 0 1 2 0 0 1 0 0 17 0 1978.8877 Q9UQE7 Q9UQE7 645 661 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 1.5145E-06 124.2 By MS/MS 1.5 0.5 1 1 2 12781000 0 0 12781000 433 2222 449 1794;1795 1439 1439 1 0 0 2851700 AFTQLSNLQSHR TGDRPYKCAHPGCEKAFTQLSNLQSHRRQH CEKAFTQLSNLQSHRRQHNKDKPFKCHNCH K A F H R R 1 1 1 0 0 2 0 0 1 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1400.7161 Q8TF68 Q8TF68 383 394 ZNF384 Zinc finger protein 384 yes yes 2;3 2.4577E-05 151.83 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 13295000 0 9819800 3474900 434 1669 450 1796;1797;1798;1799 1440;1441;1442 1441 3 0 3258800 484690 AFVAIGDYNGHVGLGVK PVQKQTRAGQRTRFKAFVAIGDYNGHVGLG VAIGDYNGHVGLGVKCSKEVATAIRGAIIL K A F V K C 2 0 1 1 0 0 0 4 1 1 1 1 0 1 0 0 0 0 1 3 0 0 17 0 1715.8995 P15880 P15880 126 142 RPS2 40S ribosomal protein S2 yes yes 2;3 5.7444E-06 138.75 By MS/MS By MS/MS 6.33 0.471 4 2 2 4 158660000 0 48250000 110410000 435 571 451 1800;1801;1802;1803;1804;1805 1443;1444;1445 1444 3 0 16702000 16641000 AFVATQGATVVDQTTLMK ______________________________ ATQGATVVDQTTLMKKYLQFVAALTDVNTP M A F M K K 3 0 0 1 0 2 0 1 0 0 1 1 1 1 0 0 4 0 0 3 0 0 18 0 1879.9713 Q9Y4A5 Q9Y4A5 2 19 TRRAP Transformation/transcription domain-associated protein yes yes 2 8.6357E-23 187.11 By MS/MS 1 0 1 1 4411300 0 0 4411300 436 2285 452 1806 1446 1446 1 0 0 950480 AFVDFLSDEIK ACGCGCGSLHTDGDKAFVDFLSDEIKEERK DGDKAFVDFLSDEIKEERKIQKHKTLPKMS K A F I K E 1 0 0 2 0 0 1 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 11 0 1282.6445 Q07021 Q07021 81 91 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 2 0.011349 89.047 By matching By MS/MS 7.33 0.471 2 1 1 2 6216900 0 426380 5790500 437 1175 453 1807;1808;1809 1447 1447 1 0 244830 1012200 AFVDFLSDEIKEER ACGCGCGSLHTDGDKAFVDFLSDEIKEERK KAFVDFLSDEIKEERKIQKHKTLPKMSGGW K A F E R K 1 1 0 2 0 0 3 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0 14 1 1696.8308 Q07021 Q07021 81 94 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 2;3 4.4911E-05 152.67 By matching By MS/MS 6.4 0.49 3 2 1 4 29860000 0 979580 28881000 438 1175 454 1810;1811;1812;1813;1814 1448;1449;1450 1448 3 0 339100 4476200 AFVHWYVGEGMEEGEFSEAR WARLDHKFDLMYAKRAFVHWYVGEGMEEGE YVGEGMEEGEFSEAREDMAALEKDYEEVGV R A F A R E 2 1 0 0 0 0 5 3 1 0 0 0 1 2 0 1 0 1 1 2 0 0 20 0 2329.011 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3 P68363 403 422 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2;3 1.81E-70 233.59 By MS/MS By MS/MS 4.57 0.495 3 4 1 6 174850000 0 5136900 169710000 439 1077;1515;1883;1078 455;456 1815;1816;1817;1818;1819;1820;1821 1451;1452;1453;1454;1455;1456;1457;1458;1459;1460;1461 1460 519 11 0 1324100 26913000 AFVHWYVGEGMEEGEFSEAREDMAALEK WARLDHKFDLMYAKRAFVHWYVGEGMEEGE GEFSEAREDMAALEKDYEEVGVDSVEGEGE R A F E K D 4 1 0 1 0 0 7 3 1 0 1 1 2 2 0 1 0 1 1 2 0 0 28 1 3216.4169 P68363;P68366;Q71U36;Q9BQE3 P68363 403 430 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 4 4.8356E-08 68.361 By MS/MS 4.5 0.5 1 1 2 20630000 0 0 20630000 440 1077;1515;1883;1078 457 1822;1823 1462;1463 1463 2 0 0 3175600 AFVPAILFK DEDARNFYENLIDLKAFVPAILFKDNEKSC NLIDLKAFVPAILFKDNEKSCQNKESNKDD K A F F K D 2 0 0 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 9 0 1004.6059 Q9HAU5 Q9HAU5 476 484 UPF2 Regulator of nonsense transcripts 2 yes yes 2 0.072208 66.682 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 3157200 0 851560 2305600 441 2003 458 1824;1825 1464;1465 1464 2 0 416230 521020 AFVSMVYSEEGAEDR DLIHGAPVGKPAANRAFVSMVYSEEGAEDR AFVSMVYSEEGAEDRTFARVIVGGSSEYKI R A F D R T 2 1 0 1 0 0 3 1 0 0 0 0 1 1 0 2 0 0 1 2 0 0 15 0 1688.7352 Q14683 Q14683 78 92 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 3.5792E-73 244.01 By MS/MS 1.67 0.471 1 2 3 44829000 0 0 44829000 442 1312 459;460 1826;1827;1828 1466;1467;1468 1467 595 3 0 0 9969800 AFYPEEISSMVLTK GDKPKVQVSYKGETKAFYPEEISSMVLTKM KAFYPEEISSMVLTKMKEIAEAYLGYPVTN K A F T K M 1 0 0 0 0 0 2 0 0 1 1 1 1 1 1 2 1 0 1 1 0 0 14 0 1613.8011 P0DMV9;P0DMV8 P0DMV9 113 126 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2;3 0.0018348 103.91 By MS/MS By MS/MS By MS/MS 4.8 1.83 2 1 2 1 3 1 33930000 14879000 12376000 6676000 443 501 461 1829;1830;1831;1832;1833 1469;1470;1471;1472;1473 1471 5 17167000 4958500 1184600 AGAASLDVIQEVEYVKEEAK AKSALVKPVTINVGRAGAASLDVIQEVEYV LDVIQEVEYVKEEAKMVYLLECLQKTPPPV R A G A K M 4 0 0 1 0 1 4 1 0 1 1 2 0 0 0 1 0 0 1 3 0 0 20 1 2148.095 Q9UJV9 Q9UJV9 401 420 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.000195 73.11 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 10412000 0 1707200 8704400 444 2171 462 1834;1835;1836 1474;1475 1475 2 0 727800 1566400 AGAGMITQHSSNASPINR QGPSYHDTRRMGDGRAGAGMITQHSSNASP GMITQHSSNASPINRIVQISGNSMPRGSGS R A G N R I 3 1 2 0 0 1 0 2 1 2 0 0 1 0 1 3 1 0 0 0 0 0 18 0 1810.8744 Q9NWH9 Q9NWH9 989 1006 SLTM SAFB-like transcription modulator yes yes 2 1.6961E-08 123.95 By MS/MS 1.5 0.5 1 1 2 7527300 0 0 7527300 445 2078 463 1837;1838 1476 1476 1 0 0 1641800 AGAGPGGPPQKPAPSSQR GAKPKRKPGMRPDWKAGAGPGGPPQKPAPS GPGGPPQKPAPSSQRKPPARPSAAAAAIAV K A G Q R K 3 1 0 0 0 2 0 4 0 0 0 1 0 0 5 2 0 0 0 0 0 0 18 1 1658.8489 Q9Y5J1 Q9Y5J1 31 48 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 3 0.011018 51.348 By MS/MS 2.5 0.5 1 1 2 5877000 0 0 5877000 446 2297 464 1839;1840 1477 1477 1 0 0 1142600 AGAGSAAVSGAGTPVAGPTGR ______________________________ AVSGAGTPVAGPTGRDLFAEGLLEFLRPAV M A G G R D 6 1 0 0 0 0 0 6 0 0 0 0 0 0 2 2 2 0 0 2 0 0 21 0 1710.8649 O95295 O95295 2 22 SNAPIN SNARE-associated protein Snapin yes yes 2 2.2747E-14 151.3 By MS/MS 8 0 1 1 3727600 0 3727600 0 447 318 465 1841 1478 1478 1 0 1695900 0 AGAGSATLSMAYAGAR TGRIQEAGTEVVKAKAGAGSATLSMAYAGA GAGSATLSMAYAGARFVFSLVDAMNGKEGV K A G A R F 6 1 0 0 0 0 0 3 0 0 1 0 1 0 0 2 1 0 1 0 0 0 16 0 1453.6984 P40926 P40926 242 257 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 3.3416E-57 168.05 By MS/MS By MS/MS By MS/MS 5.75 0.433 1 3 1 2 1 19110000 8518000 10592000 0 448 786 466 1842;1843;1844;1845 1479;1480;1481 1481 3 11342000 3050600 0 AGAIAPCEVTVPAQNTGLGPEK IRDMLLANKVPAAARAGAIAPCEVTVPAQN EVTVPAQNTGLGPEKTSFFQALGITTKISR R A G E K T 4 0 1 0 1 1 2 3 0 1 1 1 0 0 3 0 2 0 0 2 0 0 22 0 2179.0943 P05388;Q8NHW5 P05388 113 134 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 1.755E-24 173.44 By matching By MS/MS 6 0 3 1 2 108830000 0 6442800 102390000 449 432 467 1846;1847;1848 1482;1483 1482 2 0 2230300 15318000 AGALNSNDAFVLK ANSAGATRAVEVLPKAGALNSNDAFVLKTP PKAGALNSNDAFVLKTPSAAYLWVGTGASE K A G L K T 3 0 2 1 0 0 0 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 13 0 1318.6881 P06396 P06396 585 597 GSN Gelsolin no no 2 0.0095148 88.681 By MS/MS By MS/MS 4.33 1.49 1 1 1 1 2 4 2 59390000 0 24390000 35000000 + 450 440 468 1849;1850;1851;1852;1853;1854 1484;1485 1484 2 0 8756700 6169000 AGDEIDEPSER KYHVMANHNSLPILKAGDEIDEPSERERLR PILKAGDEIDEPSERERLRTVLKRLGKLRC K A G E R E 1 1 0 2 0 0 3 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1216.5208 Q96ME7 Q96ME7 228 238 ZNF512 Zinc finger protein 512 yes yes 2 0.010542 90.15 By MS/MS 4 0.816 1 1 1 3 11190000 0 0 11190000 451 1809 469 1855;1856;1857 1486;1487 1487 2 0 0 1946500 AGDFLEANYMNLQR ICEEQVNSLPGSITKAGDFLEANYMNLQRS KAGDFLEANYMNLQRSYTVAIAGYALAQMG K A G Q R S 2 1 2 1 0 1 1 1 0 0 2 0 1 1 0 0 0 0 1 0 0 0 14 0 1640.7617 P01024 P01024 1172 1185 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 2.2442E-07 169.76 By MS/MS 9 0 1 1 6554600 6554600 0 0 452 371 470 1858 1488 1488 1 3679100 0 0 AGDLSAGFFMEELNTYR ______________________________ DLSAGFFMEELNTYRQKQGVVLKYQELPNS M A G Y R Q 2 1 1 1 0 0 2 2 0 0 2 0 1 2 0 1 1 0 1 0 0 0 17 0 1919.8724 P19525 P19525 2 18 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 6.0183E-06 139.46 By MS/MS 2.5 0.5 1 1 2 1465100 0 0 1465100 453 609 471 1859;1860 1489 1489 1 0 0 299790 AGDLVFAK ______________________________ PRPREYKAGDLVFAKMKGYPHWPARIDELP K A G A K M 2 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 819.44905 Q9Y3E1 Q9Y3E1 11 18 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes yes 2 0.061956 69.998 By matching By MS/MS 6 0 2 1 1 12610000 0 3101300 9509000 454 2273 472 1861;1862 1490 1490 1 0 1073600 1422600 AGEAPTENPAPPTQQSSAE PRPPNAPSQDGKEAKAGEAPTENPAPPTQQ PTENPAPPTQQSSAE_______________ K A G A E - 4 0 1 0 0 2 3 1 0 0 0 0 0 0 4 2 2 0 0 0 0 0 19 0 1880.8388 P16989 P16989 354 372 YBX3 Y-box-binding protein 3 yes yes 2 6.0731E-09 143.21 By MS/MS By MS/MS By MS/MS 4.17 0.687 1 3 2 1 2 3 51733000 5198000 13768000 32767000 455 581 473 1863;1864;1865;1866;1867;1868 1491;1492;1493;1494;1495;1496 1492 6 4055300 4042200 5351000 AGELTEDEVER AHVVLRKADIDLTKRAGELTEDEVERVITI LTKRAGELTEDEVERVITIMQNPRQYKIPD R A G E R V 1 1 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1246.5677 P62269 P62269 56 66 RPS18 40S ribosomal protein S18 yes yes 2 4.3904E-07 156.83 By MS/MS By MS/MS By MS/MS 7.67 1.25 2 2 3 1 1 2 3 4 263150000 16738000 24511000 221900000 456 1014 474 1869;1870;1871;1872;1873;1874;1875;1876;1877 1497;1498;1499;1500;1501;1502;1503;1504 1497 8 15229000 10999000 40275000 AGELTPEEEAQYK ______________________________ ______________________________ M A G Y K K 2 0 0 0 0 1 4 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 13 0 1463.678 Q9NZT1 Q9NZT1 2 14 CALML5 Calmodulin-like protein 5 yes yes 2 4.5877E-08 157.66 By MS/MS By MS/MS 6.62 2.9 1 1 1 1 1 1 3 2 2 10 3 112960000 87338000 0 25623000 457 2107 475 1878;1879;1880;1881;1882;1883;1884;1885;1886;1887;1888;1889;1890 1505;1506;1507;1508;1509;1510;1511;1512;1513 1506 8 82188000 0 42408000 AGELTPEEEAQYKK ______________________________ MAGELTPEEEAQYKKAFSAVDTDGNGTINA M A G K K A 2 0 0 0 0 1 4 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 14 1 1591.773 Q9NZT1 Q9NZT1 2 15 CALML5 Calmodulin-like protein 5 yes yes 2 2.6853E-25 201.84 By MS/MS By MS/MS By MS/MS 5.5 3.06 3 2 2 2 2 2 2 2 2 3 10 2 10 1362200000 1112000000 9737700 240440000 458 2107 476 1891;1892;1893;1894;1895;1896;1897;1898;1899;1900;1901;1902;1903;1904;1905;1906;1907;1908;1909;1910;1911;1912 1514;1515;1516;1517;1518;1519;1520;1521;1522;1523;1524;1525;1526;1527;1528;1529;1530;1531;1532;1533;1534;1535 1515 22 1062100000 19527000 259080000 AGEVFIHK ITEEEMRKLFEKYGKAGEVFIHKDKGFGFI LFEKYGKAGEVFIHKDKGFGFIRLETRTLA K A G H K D 1 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 899.4865 Q15233 Q15233 100 107 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.0044378 101.64 By MS/MS By MS/MS 4.78 1.31 2 2 2 2 1 4 5 143680000 13335000 0 130350000 459 1351 477 1913;1914;1915;1916;1917;1918;1919;1920;1921 1536;1537 1536 2 11064000 0 22134000 AGEVQEPELR AYDFYPGKIDVHWTRAGEVQEPELRGDVLH VHWTRAGEVQEPELRGDVLHNGNGTYQSWV R A G L R G 1 1 0 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 10 0 1126.5619 P25311 P25311 242 251 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 2.6809E-16 177.36 By MS/MS 6.1 2.91 1 1 1 1 1 1 1 2 1 10 227630000 227630000 0 0 460 656 478 1922;1923;1924;1925;1926;1927;1928;1929;1930;1931 1538;1539;1540;1541;1542;1543;1544;1545;1546;1547;1548;1549;1550;1551 1549 14 216760000 0 0 AGFAGDDAPR DIAALVVDNGSGMCKAGFAGDDAPRAVFPS SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV K A G P R A 3 1 0 2 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 10 0 975.44101 P60709;A5A3E0;P63261;P0CG38;P0CG39;P68032;P63267;P68133;P62736;Q6S8J3 P60709 19 28 ACTB;POTEF;ACTG1;POTEI;POTEJ;ACTC1;ACTG2;ACTA1;ACTA2;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E no no 2 3.112E-16 176.09 By MS/MS By MS/MS By MS/MS 5.38 2.79 2 2 2 2 4 2 1 2 2 2 4 8 9 3602300000 65434000 1082700000 2454200000 461 966;1069;1075;1501;499 479 1932;1933;1934;1935;1936;1937;1938;1939;1940;1941;1942;1943;1944;1945;1946;1947;1948;1949;1950;1951;1952 1552;1553;1554;1555;1556;1557;1558;1559;1560;1561;1562;1563;1564;1565;1566;1567;1568;1569;1570;1571 1559 20 52994000 305640000 367700000 AGFDSDYDQALADIR FDHEKARKTGLITPKAGFDSDYDQALADIR AGFDSDYDQALADIRENEQSLLEYLEKQRN K A G I R E 3 1 0 4 0 1 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 15 0 1655.7427 P52701 P52701 931 945 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.0015461 94.191 By matching By MS/MS 1.5 0.5 1 1 1 1 4376100 0 289900 4086200 462 911 480 1953;1954 1572 1572 1 0 141700 923400 AGFIQDTSLILYEEVKPNLTER ISCKIRDLLPVMCDRAGFIQDTSLILYEEV SLILYEEVKPNLTERIQDYDVSLDKALDEL R A G E R I 1 1 1 1 0 1 3 1 0 2 3 1 0 1 1 1 2 0 1 1 0 0 22 1 2535.3221 Q93009 Q93009 724 745 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 3 6.3844E-12 109.65 By MS/MS 1.5 0.5 1 1 2 14476000 0 0 14476000 463 1738 481 1955;1956 1573 1573 1 0 0 3245100 AGFVPVYLR VSYGLTPRLLKFWKRAGFVPVYLRQTPNDL LKFWKRAGFVPVYLRQTPNDLTGEHSCIML R A G L R Q 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 2 0 0 9 0 1020.5757 Q9H0A0 Q9H0A0 726 734 NAT10 N-acetyltransferase 10 yes yes 2 0.0078718 91.906 By matching By MS/MS By MS/MS 2.73 1.21 2 3 3 2 1 2 4 5 77056000 8472100 22821000 45763000 464 1959 482 1957;1958;1959;1960;1961;1962;1963;1964;1965;1966;1967 1574;1575;1576;1577;1578;1579;1580 1578 7 9963800 10156000 9705000 AGGAAVVITEPEHTK PGGGKRAARPATAGKAGGAAVVITEPEHTK AGGAAVVITEPEHTKERVKLEGSKCKGQLL K A G T K E 3 0 0 0 0 0 2 2 1 1 0 1 0 0 1 0 2 0 0 2 0 0 15 0 1478.7729 Q9P258 Q9P258 78 92 RCC2 Protein RCC2 yes yes 2;3 0.00041877 137.89 By matching By MS/MS By MS/MS 4.11 0.875 2 5 1 1 1 2 6 140180000 5384000 10829000 123970000 465 2120 483 1968;1969;1970;1971;1972;1973;1974;1975;1976 1581;1582;1583;1584;1585 1582 5 4200500 3593900 21476000 AGGAAVVITEPEHTKER PGGGKRAARPATAGKAGGAAVVITEPEHTK GAAVVITEPEHTKERVKLEGSKCKGQLLIF K A G E R V 3 1 0 0 0 0 3 2 1 1 0 1 0 0 1 0 2 0 0 2 0 0 17 1 1763.9166 Q9P258 Q9P258 78 94 RCC2 Protein RCC2 yes yes 3 0.0016159 72.315 By MS/MS 4 0 1 1 983130 0 983130 0 466 2120 484 1977 1586 1586 1 0 326260 0 AGGADAVQTVTGGLR ______________________________ AGGADAVQTVTGGLRSLYLRKVLPLEEAYR R A G L R S 3 1 0 1 0 1 0 4 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1371.7106 Q9H223 Q9H223 15 29 EHD4 EH domain-containing protein 4 yes yes 2 4.5734E-16 118.28 By MS/MS 4 0 1 1 0 0 0 0 467 1971 485 1978 1587 1587 1 0 0 0 AGGDAEPRPAEPPAWAGGAR SAAVLFSAVAVGKPRAGGDAEPRPAEPPAW EPRPAEPPAWAGGARPGPGVWDPNWDRREP R A G A R P 6 2 0 1 0 0 2 4 0 0 0 0 0 0 4 0 0 1 0 0 0 0 20 1 1931.9238 Q96HS1 Q96HS1 33 52 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 3 5.2271E-06 90.972 By MS/MS By MS/MS 6 0 2 1 1 23068000 0 8602200 14466000 468 1796 486 1979;1980 1588;1589 1588 2 0 2977800 2164200 AGGEAGVTLGQPHLSR ______________________________ GGEAGVTLGQPHLSRQDLTTLDVTKLTPLS M A G S R Q 2 1 0 0 0 1 1 4 1 0 2 0 0 0 1 1 1 0 0 1 0 0 16 0 1548.8009 P41091;Q2VIR3 P41091 2 17 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2;3 8.4246E-129 273.44 By MS/MS By MS/MS By MS/MS 5.36 2.57 2 1 3 5 3 3 2 2 2 2 1 14 10 1032600000 7327200 503950000 521330000 469 790 487 1981;1982;1983;1984;1985;1986;1987;1988;1989;1990;1991;1992;1993;1994;1995;1996;1997;1998;1999;2000;2001;2002;2003;2004;2005 1590;1591;1592;1593;1594;1595;1596;1597;1598;1599;1600;1601;1602;1603;1604;1605;1606;1607;1608;1609;1610;1611;1612;1613;1614;1615 1594 26 5716500 225510000 111340000 AGGFASALER GSESGSSNAKEPKTRAGGFASALERHSELL EPKTRAGGFASALERHSELLQKVEPLQKGS R A G E R H 3 1 0 0 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 977.49304 Q9Y2Q9 Q9Y2Q9 49 58 MRPS28 28S ribosomal protein S28, mitochondrial yes yes 2 0.00095797 111.39 By MS/MS By matching 6.67 0.471 1 2 2 1 22970000 0 10619000 12351000 470 2245 488 2006;2007;2008 1616 1616 1 0 5822100 2191600 AGGPATPLSPTR RPRAAATMATPLPGRAGGPATPLSPTRLSR PGRAGGPATPLSPTRLSRLQEKEELRELND R A G T R L 2 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 2 0 0 0 0 0 12 0 1123.5986 Q03252 Q03252 29 40 LMNB2 Lamin-B2 yes yes 2 8.6662E-06 108.57 By MS/MS By MS/MS 3 0 2 1 1 38742000 0 0 38742000 471 1156 489 2009;2010 1617;1618 1617 2 0 0 7514100 AGGPTTPLSPTR ______________________________ GSRAGGPTTPLSPTRLSRLQEKEELRELND R A G T R L 1 1 0 0 0 0 0 2 0 0 1 0 0 0 3 1 3 0 0 0 0 0 12 0 1153.6091 P20700 P20700 15 26 LMNB1 Lamin-B1 yes yes 2 0.0016359 111.06 By matching By MS/MS By MS/MS 2.29 1.03 2 2 2 1 1 2 4 325450000 1238600 92413000 231800000 472 619 490 2011;2012;2013;2014;2015;2016;2017 1619;1620;1621;1622;1623;1624 1623 6 1238600 39499000 44940000 AGGSASAMLQPLLDNQVGFK YSFDPVGSYQRDSFKAGGSASAMLQPLLDN SAMLQPLLDNQVGFKNMQNVEHVPLSLDRA K A G F K N 3 0 1 1 0 2 0 3 0 0 3 1 1 1 1 2 0 0 0 1 0 0 20 0 2003.0146 P20618 P20618 165 184 PSMB1 Proteasome subunit beta type-1 yes yes 2 3.5516E-14 153.81 By matching By MS/MS 6.25 0.829 1 1 2 3 1 10736000 0 4743400 5992600 473 617 491 2018;2019;2020;2021 1625 1625 1 0 1896300 1063300 AGIEGPLLASDVGR RPLLPKDMERLTSLRAGIEGPLLASDVGRD RAGIEGPLLASDVGRDRSAASPVVSSMPER R A G G R D 2 1 0 1 0 0 1 3 0 1 2 0 0 0 1 1 0 0 0 1 0 0 14 0 1353.7252 P18583 P18583 1750 1763 SON Protein SON yes yes 2 0.00027987 150.21 By MS/MS By matching 1.5 0.5 1 1 1 1 9924800 0 8406800 1518100 474 596 492 2022;2023 1626 1626 1 0 4109100 343060 AGILTTLNAR AIHEVMEQQTISIAKAGILTTLNARCSILA ISIAKAGILTTLNARCSILAAANPAYGRYN K A G A R C 2 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 2 0 0 0 0 0 10 0 1028.5978 P33993 P33993 472 481 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.044737 74.184 By MS/MS By MS/MS 4.67 3.09 1 1 1 1 2 16096000 0 2844800 13251000 475 733 493 2024;2025;2026 1627;1628 1627 2 0 2278000 2648400 AGITTTLNSR AIHEAMEQQTISIAKAGITTTLNSRCSVLA ISIAKAGITTTLNSRCSVLAAANSVFGRWD K A G S R C 1 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 3 0 0 0 0 0 10 0 1032.5564 P33992 P33992 472 481 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.018636 83.783 By matching By MS/MS 3 0 2 1 1 13107000 2406700 0 10701000 476 732 494 2027;2028 1629 1629 1 2776800 0 2075400 AGKFPSLLTHNENMVAK LIKQIPRILGPGLNKAGKFPSLLTHNENMV KFPSLLTHNENMVAKVDEVKSTIKFQMKKV K A G A K V 2 0 2 0 0 0 1 1 1 0 2 2 1 1 1 1 1 0 0 1 0 0 17 1 1855.9615 P62906 P62906 131 147 RPL10A 60S ribosomal protein L10a yes yes 3;4 0.00078794 79.326 By MS/MS By MS/MS 6.71 0.452 2 5 5 2 125070000 0 107150000 17919000 477 1049 495;496 2029;2030;2031;2032;2033;2034;2035 1630;1631;1632;1633 1631 503 4 0 60993000 3179600 AGLAMPGPPLGPVLGQR LRKPEVGGVIRAIVRAGLAMPGPPLGPVLG LAMPGPPLGPVLGQRGVSINQFCKEFNERT R A G Q R G 2 1 0 0 0 1 0 4 0 0 3 0 1 0 4 0 0 0 0 1 0 0 17 0 1629.9025 Q9Y3B7 Q9Y3B7 26 42 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 9.248E-06 134.84 By MS/MS By MS/MS 7 0 3 1 2 26579000 0 8077300 18502000 478 2266 497 2036;2037;2038 1634;1635;1636;1637 1637 4 0 4638000 3283000 AGLEDLQVAFR EISFQEFLTAAKKARAGLEDLQVAFRAFDQ KKARAGLEDLQVAFRAFDQDGDGHITVDEL R A G F R A 2 1 0 1 0 1 1 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1217.6404 Q9NZT1 Q9NZT1 78 88 CALML5 Calmodulin-like protein 5 yes yes 2 0.00086737 115.71 By MS/MS By matching 7.5 3.77 1 1 2 3 1 8555000 8052900 0 502170 479 2107 498 2039;2040;2041;2042 1638;1639;1640 1639 3 6949200 0 1098300 AGLELLSDQGYR ______________________________ ______________________________ M A G Y R V 1 1 0 1 0 1 1 2 0 0 3 0 0 0 0 1 0 0 1 0 0 0 12 0 1320.6674 Q9NPD3 Q9NPD3 2 13 EXOSC4 Exosome complex component RRP41 yes yes 2 4.2175E-06 158.76 By matching By MS/MS By MS/MS 6.25 0.829 1 1 2 1 1 2 51837000 2916600 7748100 41172000 480 2025 499 2043;2044;2045;2046 1641;1642 1642 2 2336600 4449000 7251100 AGLESGAEPGDGDSDTTK IKKEKKKSKKDKKAKAGLESGAEPGDGDSD ESGAEPGDGDSDTTKKKKKKKKAKEVELVS K A G T K K 2 0 0 3 0 0 2 4 0 0 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1705.7279 O60832 O60832 481 498 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 4.2016E-08 110.92 By MS/MS 3.5 0.5 1 1 2 6955000 0 0 6955000 481 235 500 2047;2048 1643 1643 1 0 0 1242000 AGLESGAEPGDGDSDTTKK IKKEKKKSKKDKKAKAGLESGAEPGDGDSD SGAEPGDGDSDTTKKKKKKKKAKEVELVSE K A G K K K 2 0 0 3 0 0 2 4 0 0 1 2 0 0 1 2 2 0 0 0 0 0 19 1 1833.8228 O60832 O60832 481 499 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 3 0.04889 30.767 By MS/MS 4 0 1 1 1799100 0 0 1799100 482 235 501 2049 1644 1644 1 0 0 293860 AGLGSAGDMTLSMTGR ERVRCGLEHERQGRRAGLGSAGDMTLSMTG GLGSAGDMTLSMTGRERSEYLRWKQEREKI R A G G R E 2 1 0 1 0 0 0 4 0 0 2 0 2 0 0 2 2 0 0 0 0 0 16 0 1523.7072 Q9Y3X0 Q9Y3X0 244 259 CCDC9 Coiled-coil domain-containing protein 9 yes yes 2 0.0016452 91.914 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 11277000 0 6962800 4314400 483 2279 502 2050;2051;2052 1645;1646 1646 2 0 2867600 836780 AGLITNFNEPINQIATQIAVLIAK VAPHALSEEEKTTLRAGLITNFNEPINQIA PINQIATQIAVLIAKVARLDCPRQWPELIP R A G A K V 4 0 3 0 0 2 1 1 0 5 2 1 0 1 1 0 2 0 0 1 0 0 24 0 2551.4374 Q9UI26 Q9UI26 92 115 IPO11 Importin-11 yes yes 3 0.056506 21.564 By MS/MS 2 0 1 1 806680 0 0 806680 484 2161 503 2053 1647 1647 1 0 0 182290 AGLLQVYIHTQK THQSLLMLMDSPLNRAGLLQVYIHTQKNVL LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT R A G Q K N 1 0 0 0 0 2 0 1 1 1 2 1 0 0 0 0 1 0 1 1 0 0 12 0 1369.7718 Q92979 Q92979 103 114 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2;3 0.00026146 130.66 By MS/MS 6.67 0.471 1 2 3 19560000 0 0 19560000 485 1736 504 2054;2055;2056 1648;1649 1648 2 0 0 3360600 AGLNCSTENMPIK CYGYEGIDAVKEALRAGLNCSTENMPIKIN LRAGLNCSTENMPIKINLIAPPRYVMTTTT R A G I K I 1 0 2 0 1 0 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 0 13 0 1433.6643 P05198 P05198 214 226 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.00015085 123.86 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 25473000 0 0 25473000 486 428 505 2057;2058;2059 1650;1651 1650 2 0 0 3757600 AGLNSLEAVKR ______________________________ ______________________________ M A G K R K 2 1 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 1 1156.6564 P67936 P67936 2 12 TPM4 Tropomyosin alpha-4 chain yes yes 2 0.00025056 101.46 By MS/MS 6 0 1 1 0 0 0 0 487 1074 506 2060 1652 1652 1 0 0 0 AGLQEGDQVLAVNDVDFQDIEHSK GIFISKVIPDSDAHRAGLQEGDQVLAVNDV LAVNDVDFQDIEHSKAVEILKTAREISMRV R A G S K A 2 0 1 4 0 3 2 2 1 1 2 1 0 1 0 1 0 0 0 3 0 0 24 0 2626.2511 Q5EBL8 Q5EBL8 86 109 PDZD11 PDZ domain-containing protein 11 yes yes 3 6.9083E-08 85.376 By MS/MS 8 0 1 1 7635600 0 0 7635600 488 1435 507 2061 1653 1653 1 0 0 1170600 AGLQFPVGR QGGKARAKAKTRSSRAGLQFPVGRVHRLLR KTRSSRAGLQFPVGRVHRLLRKGNYAERVG R A G G R V 1 1 0 0 0 1 0 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 943.52395 Q71UI9;P0C0S5;Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q16777;Q6FI13;Q8IUE6;Q93077;Q7L7L0;P04908 Q99878 22 30 H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AC;HIST2H2AA3;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2 9.6325E-05 143 By MS/MS By MS/MS By MS/MS 5.96 2.94 3 2 2 1 2 3 3 4 3 3 5 11 10 21448000000 829530000 8940900000 11678000000 489 497;1399;1473;1740;574;1566;496 508 2062;2063;2064;2065;2066;2067;2068;2069;2070;2071;2072;2073;2074;2075;2076;2077;2078;2079;2080;2081;2082;2083;2084;2085;2086;2087 1654;1655;1656;1657;1658;1659;1660;1661;1662;1663;1664;1665;1666;1667;1668;1669;1670;1671;1672;1673;1674;1675;1676;1677;1678;1679;1680;1681;1682;1683;1684;1685;1686;1687;1688;1689;1690;1691;1692;1693;1694;1695;1696;1697;1698;1699;1700;1701;1702;1703;1704;1705;1706;1707;1708;1709;1710;1711;1712;1713;1714;1715 1657 62 922260000 7210700000 3984900000 AGLQFPVGRVHR QGGKARAKAKTRSSRAGLQFPVGRVHRLLR SSRAGLQFPVGRVHRLLRKGNYAERVGAGA R A G H R L 1 2 0 0 0 1 0 2 1 0 1 0 0 1 1 0 0 0 0 2 0 0 12 1 1335.7524 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q16777;Q6FI13;Q8IUE6;Q93077;Q7L7L0;P04908 Q99878 22 33 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AC;HIST2H2AA3;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 3 0.0016267 98.943 By MS/MS By matching 8 0 2 1 1 11557000 0 7286700 4270200 490 497;1399;1473;1740;574;1566 509 2088;2089 1716 1716 1 0 3315200 654670 AGLSDLELR ______________________________ ______________________________ M A G L R R 1 1 0 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 972.52401 Q8NC56 Q8NC56 2 10 LEMD2 LEM domain-containing protein 2 yes yes 2 3.3389E-17 182.09 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 12241000 0 2119200 10122000 491 1631 510 2090;2091;2092 1717;1718 1718 2 0 703300 1697800 AGLSDLELRR ______________________________ ______________________________ M A G R R E 1 2 0 1 0 0 1 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 1 1128.6251 Q8NC56 Q8NC56 2 11 LEMD2 LEM domain-containing protein 2 yes yes 2 0.0030576 93.267 By MS/MS By MS/MS 4 0 2 1 1 28704000 0 20793000 7911000 492 1631 511 2093;2094 1719;1720 1719 2 0 6900400 1292100 AGLSQSLFER HCQLGPVVMCKKAAKAGLSQSLFERLVVLG KKAAKAGLSQSLFERLVVLGIRPIRLQVQY K A G E R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 10 0 1106.572 Q92900 Q92900 689 698 UPF1 Regulator of nonsense transcripts 1 yes yes 2 5.5479E-17 183.65 By matching By MS/MS 2 0 2 1 1 8425300 1488500 0 6936800 493 1729 512 2095;2096 1721 1721 1 1793500 0 1567600 AGLTLFVGR ______________________________ ______________________________ M A G G R L 1 1 0 0 0 0 0 2 0 0 2 0 0 1 0 0 1 0 0 1 0 0 9 0 932.54435 Q9NW13 Q9NW13 2 10 RBM28 RNA-binding protein 28 yes yes 1;2 2.3425E-06 127.84 By matching By MS/MS By MS/MS 3.18 1.47 5 3 1 2 2 5 4 14042000 2319600 6369700 5352700 494 2075 513 2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107 1722;1723;1724;1725;1726 1723 4 2794800 2715000 996540 AGLVELLLR AGAGPAMAVWTRATKAGLVELLLRERWVRV WTRATKAGLVELLLRERWVRVVAELSGESL K A G L R E 1 1 0 0 0 0 1 1 0 0 4 0 0 0 0 0 0 0 0 1 0 0 9 0 982.61752 Q13425 Q13425 25 33 SNTB2 Beta-2-syntrophin yes yes 2 0.0010401 109.86 By MS/MS 3.5 0.5 1 1 2 1885100 0 0 1885100 495 1245 514 2108;2109 1727 1727 1 0 0 341440 AGLVGPEFHEK DPATSARLTVDEAVRAGLVGPEFHEKLLSA EAVRAGLVGPEFHEKLLSAEKAVTGYRDPY R A G E K L 1 0 0 0 0 0 2 2 1 0 1 1 0 1 1 0 0 0 0 1 0 0 11 0 1182.6033 Q15149 Q15149 3221 3231 PLEC Plectin yes yes 2 0.05987 71.451 By MS/MS 1 0 1 1 8174500 0 8174500 0 496 1348 515 2110 1728 1728 1 0 3995600 0 AGMQPGLTMVVGPPGTGK RNTIQFTHTQIEAIRAGMQPGLTMVVGPPG QPGLTMVVGPPGTGKTDVAVQIISNIYHNF R A G G K T 1 0 0 0 0 1 0 5 0 0 1 1 2 0 3 0 2 0 0 2 0 0 18 0 1696.864 O60306 O60306 812 829 AQR Intron-binding protein aquarius yes yes 2 0.001318 84.506 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 19137000 0 8353900 10783000 497 225 516 2111;2112;2113;2114 1729;1730;1731 1731 3 0 3833900 2370700 AGMSSNQSISSPVLDAVPR SGHSSSELSPDAVEKAGMSSNQSISSPVLD SNQSISSPVLDAVPRTPSRERSSSASSPEM K A G P R T 2 1 1 1 0 1 0 1 0 1 1 0 1 0 2 5 0 0 0 2 0 0 19 0 1914.9469 Q9UQ35 Q9UQ35 1394 1412 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.003055 69.714 By MS/MS 1 0 1 1 4369500 0 4369500 0 498 2219 517 2115 1732 1732 1 0 2135700 0 AGNFYVPAEPK QMYRTEIRMARMARKAGNFYVPAEPKLAFV MARKAGNFYVPAEPKLAFVIRIRGINGVSP K A G P K L 2 0 1 0 0 0 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 11 0 1191.5924 P18124 P18124 78 88 RPL7 60S ribosomal protein L7 yes yes 2 0.0059988 99.013 By MS/MS By matching 5.67 0.471 1 2 2 1 199360000 0 42341000 157020000 499 594 518 2116;2117;2118 1733 1733 1 0 14353000 23492000 AGNGQWASVIR FLNENLPESIFGAPKAGNGQWASVIRVMNP GAPKAGNGQWASVIRVMNPIQGNTLDLVQL K A G I R V 2 1 1 0 0 1 0 2 0 1 0 0 0 0 0 1 0 1 0 1 0 0 11 0 1157.5942 Q15393 Q15393 857 867 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0018146 109.44 By MS/MS 2 0 1 1 4423600 0 4423600 0 500 1361 519 2119 1734 1734 1 0 1992000 0 AGNLGGGVVTIER NFEQFLQERIKVNGKAGNLGGGVVTIERSK GKAGNLGGGVVTIERSKSKITVTSEVPFSK K A G E R S 1 1 1 0 0 0 1 4 0 1 1 0 0 0 0 0 1 0 0 2 0 0 13 0 1241.6728 P35268 P35268 53 65 RPL22 60S ribosomal protein L22 yes yes 2 0.00010633 152.7 By MS/MS By MS/MS By MS/MS 8.22 1.4 2 3 2 2 1 4 4 845840000 21657000 186730000 637460000 501 747 520 2120;2121;2122;2123;2124;2125;2126;2127;2128 1735;1736;1737;1738;1739;1740;1741;1742;1743;1744 1735 10 18594000 103320000 130370000 AGNNMLLVGVHGPR AYVGQKSSFTVDCSKAGNNMLLVGVHGPRT KAGNNMLLVGVHGPRTPCEEILVKHVGSRL K A G P R T 1 1 2 0 0 0 0 3 1 0 2 0 1 0 1 0 0 0 0 2 0 0 14 0 1433.7562 P21333 P21333 2585 2598 FLNA Filamin-A yes yes 2 0.016291 76.282 By MS/MS 1 0 1 1 2934900 0 2934900 0 502 623 521 2129 1745 1745 1 0 1434500 0 AGPESDAQYQFTGIK ______________________________ AGPESDAQYQFTGIKKYFNSYTLTGRMNCV M A G I K K 2 0 0 1 0 2 1 2 0 1 0 1 0 1 1 1 1 0 1 0 0 0 15 0 1610.7577 Q96IX5 Q96IX5 2 16 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2 1.0061E-17 192.5 By MS/MS 9.5 0.5 1 1 2 37858000 0 0 37858000 503 1799 522 2130;2131 1746;1747 1747 2 0 0 74205000 AGPGSEELTVTNAR TGTRKGQGGECEIRRAGPGSEELTVTNARY RAGPGSEELTVTNARYVPVSCEKEVDALLH R A G A R Y 2 1 1 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1400.6896 Q9BW19 Q9BW19 490 503 KIFC1 Kinesin-like protein KIFC1 yes yes 2 2.329E-07 169.58 By matching By MS/MS By MS/MS 3 0 3 1 1 1 22828000 3500900 4872300 14455000 504 1919 523 2132;2133;2134 1748;1749 1748 2 4039200 2077100 2803600 AGPGSSPLFSLLPGYR VPFMDSEAESENPPRAGPGSSPLFSLLPGY GPGSSPLFSLLPGYRGHPSFQSLVSKLRSQ R A G Y R G 1 1 0 0 0 0 0 3 0 0 3 0 0 1 3 3 0 0 1 0 0 0 16 0 1617.8515 Q9H0W8 Q9H0W8 446 461 SMG9 Protein SMG9 yes yes 2 0.0031592 86.313 By MS/MS 4 0 1 1 2077500 0 2077500 0 505 1966 524 2135 1750 1750 1 0 689450 0 AGPGTLSVTIEGPSK GTTGIQSEFFINTTRAGPGTLSVTIEGPSK AGPGTLSVTIEGPSKVKMDCQETPEGYKVM R A G S K V 1 0 0 0 0 0 1 3 0 1 1 1 0 0 2 2 2 0 0 1 0 0 15 0 1412.7511 O75369 O75369 2412 2426 FLNB Filamin-B yes yes 2 0.0013689 95.401 By MS/MS 1 0 1 1 3957300 0 3957300 0 506 254 525 2136 1751 1751 1 0 1934300 0 AGPIWDLR PRDLYEDELVPLFEKAGPIWDLRLMMDPLS LVPLFEKAGPIWDLRLMMDPLSGQNRGYAF K A G L R L 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 8 0 926.4974 O43390;O60506 O43390 188 195 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 0.0017394 111.65 By MS/MS By MS/MS 4 2.24 2 1 2 1 2 2 5 5 373100000 0 175400000 197700000 507 195;227 526 2137;2138;2139;2140;2141;2142;2143;2144;2145;2146 1752;1753;1754;1755;1756;1757;1758;1759;1760;1761;1762;1763 1763 12 0 68170000 37872000 AGPNASIISLK IIRGDDEEWNEVLNKAGPNASIISLKSDKK VLNKAGPNASIISLKSDKKRKLEAKQEPKQ K A G L K S 2 0 1 0 0 0 0 1 0 2 1 1 0 0 1 2 0 0 0 0 0 0 11 0 1069.6132 Q9H0A0 Q9H0A0 979 989 NAT10 N-acetyltransferase 10 yes yes 2 0.010563 90.108 By MS/MS 2 0 1 1 23946000 0 23946000 0 508 1959 527 2147 1764 1764 1 0 10783000 0 AGPQPLALQLEQLLNPR ______________________________ PQPLALQLEQLLNPRPSEADPEADPEEATA M A G P R P 2 1 1 0 0 3 1 1 0 0 5 0 0 0 3 0 0 0 0 0 0 0 17 0 1857.0472 Q9NY61 Q9NY61 2 18 AATF Protein AATF yes yes 2;3 3.3486E-06 149.23 By MS/MS By MS/MS 2.75 0.433 1 3 1 3 14534000 0 858570 13676000 509 2094 528 2148;2149;2150;2151 1765;1766;1767 1766 3 0 366010 2679600 AGQMVTVWAAGAGVAHSPPSTLVWK GEEIAYKFTPKYILRAGQMVTVWAAGAGVA GAGVAHSPPSTLVWKGQSSWGTGESFRTVL R A G W K G 5 0 0 0 0 1 0 3 1 0 1 1 1 0 2 2 2 2 0 4 0 0 25 0 2520.2947 Q03252 Q03252 525 549 LMNB2 Lamin-B2 yes yes 3 3.1578E-12 93.111 By MS/MS By MS/MS 3 0 3 2 1 70751000 0 24119000 46632000 510 1156 529;530 2152;2153;2154 1768;1769;1770;1771 1771 553 4 0 10282000 9044300 AGQPHSSSDAAQAPAEQPHSSSDAAQAPCPR QFCRRMGQKKQRPARAGQPHSSSDAAQAPA QPHSSSDAAQAPCPRERCLGPPTTPGPYRS R A G P R E 8 1 0 2 1 4 1 1 2 0 0 0 0 0 5 6 0 0 0 0 0 0 31 0 3112.3653 P29372 P29372 28 58 MPG DNA-3-methyladenine glycosylase yes yes 4 4.4467E-06 51.758 By MS/MS 6 0 1 1 11114000 0 0 11114000 511 698 531 2155 1772 1772 1 0 0 1662700 AGQSAAGAAPGGGVDTR ______________________________ QSAAGAAPGGGVDTRDAEMPATEKDLAEDA R A G T R D 5 1 0 1 0 1 0 5 0 0 0 0 0 0 1 1 1 0 0 1 0 0 17 0 1441.691 P21333 P21333 8 24 FLNA Filamin-A yes yes 2 0.023018 60.628 By MS/MS 1 0 1 1 1227300 0 1227300 0 512 623 532 2156 1773 1773 1 0 599910 0 AGQTVTIWAANAGVTASPPTDLIWK DTSVSYKYTSRYVLKAGQTVTIWAANAGVT NAGVTASPPTDLIWKNQNSWGTGEDVKVIL K A G W K N 5 0 1 1 0 1 0 2 0 2 1 1 0 0 2 1 4 2 0 2 0 0 25 0 2567.3384 P20700 P20700 492 516 LMNB1 Lamin-B1 yes yes 2;3 1.5799E-51 200.48 By MS/MS By MS/MS 2.33 0.745 1 2 3 1 5 97562000 0 2244100 95317000 513 619 533 2157;2158;2159;2160;2161;2162 1774;1775;1776;1777;1778;1779;1780 1780 7 0 956680 18719000 AGQVVTIWAAGAGATHSPPTDLVWK DPLLTYRFPPKFTLKAGQVVTIWAAGAGAT GAGATHSPPTDLVWKAQNTWGCGNSLRTAL K A G W K A 5 0 0 1 0 1 0 3 1 1 1 1 0 0 2 1 3 2 0 3 0 0 25 0 2532.3125 P02545 P02545 491 515 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 9.7666E-38 184.22 By MS/MS By MS/MS 3.57 2.38 1 1 3 1 1 1 6 185430000 0 31218000 154210000 514 387 534 2163;2164;2165;2166;2167;2168;2169 1781;1782;1783;1784;1785;1786;1787;1788 1785 8 0 13308000 30327000 AGRPQFDDQGK YVDFPITDVLQMMGRAGRPQFDDQGKAVIL MMGRAGRPQFDDQGKAVILVHDIKKDFYKK R A G G K A 1 1 0 2 0 2 0 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 11 1 1217.5789 Q8N3C0 Q8N3C0 1690 1700 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.068187 44.543 By MS/MS 1 0 1 1 1302100 0 1302100 0 515 1602 535 2170 1789 1789 1 0 636420 0 AGSATVLSGSIAGLEGGSQLALR QDSQKKIISNLFLGRAGSATVLSGSIAGLE GSIAGLEGGSQLALRRATSMRKTFTTGMAA R A G L R R 4 1 0 0 0 1 1 5 0 1 4 0 0 0 0 4 1 0 0 1 0 0 23 0 2114.1331 Q92614 Q92614 978 1000 MYO18A Unconventional myosin-XVIIIa yes yes 3 0.0016365 52.483 By MS/MS 1 0 1 1 1564800 0 1564800 0 516 1710 536 2171 1790 1790 1 0 764830 0 AGSLLWMVATSPGR DQQSSSSRLRSAVSRAGSLLWMVATSPGRL RAGSLLWMVATSPGRLFRLLYWWAGTTWYR R A G G R L 2 1 0 0 0 0 0 2 0 0 2 0 1 0 1 2 1 1 0 1 0 0 14 0 1444.7497 Q9UH99 Q9UH99 162 175 SUN2 SUN domain-containing protein 2 yes yes 2 0.00056404 144.17 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 17513000 0 1497600 16016000 517 2148 537 2172;2173;2174;2175 1791;1792 1792 2 0 638440 2889900 AGTFQAFEQFGQQLLAHGHYASPEIK LLERHQEHRTEIDARAGTFQAFEQFGQQLL QQLLAHGHYASPEIKQKLDILDQERADLEK R A G I K Q 4 0 0 0 0 4 2 3 2 1 2 1 0 3 1 1 1 0 1 0 0 0 26 0 2874.4089 Q13813 Q13813 1392 1417 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 1.7261E-25 126.27 By MS/MS 1.5 0.5 1 1 2 70450000 0 0 70450000 518 1268 538 2176;2177 1793 1793 1 0 0 15318000 AGTGENAPWVVEDELVK NKEIVRYFIRHNALRAGTGENAPWVVEDEL TGENAPWVVEDELVKKYSLPSKFSDFLLDP R A G V K K 2 0 1 1 0 0 3 2 0 0 1 1 0 0 1 0 1 1 0 3 0 0 17 0 1812.8894 Q9UIG0 Q9UIG0 264 280 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.030085 57.095 By MS/MS 1.5 0.5 1 1 2 24285000 0 0 24285000 519 2164 539 2178;2179 1794 1794 1 0 0 5314500 AGTGENAPWVVEDELVKK NKEIVRYFIRHNALRAGTGENAPWVVEDEL GENAPWVVEDELVKKYSLPSKFSDFLLDPY R A G K K Y 2 0 1 1 0 0 3 2 0 0 1 2 0 0 1 0 1 1 0 3 0 0 18 1 1940.9844 Q9UIG0 Q9UIG0 264 281 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.00051309 97.297 By MS/MS 1 0 2 2 23768000 0 0 23768000 520 2164 540 2180;2181 1795;1796 1795 2 0 0 5121200 AGTGVDNVDLEAATR ADVINAAEKLQVVGRAGTGVDNVDLEAATR AGTGVDNVDLEAATRKGILVMNTPNGNSLS R A G T R K 3 1 1 2 0 0 1 2 0 0 1 0 0 0 0 0 2 0 0 2 0 0 15 0 1487.7216 O43175 O43175 76 90 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 6.8755E-25 196.67 By matching By MS/MS By MS/MS 6.4 2.94 3 2 1 2 2 43059000 2449600 9713300 30896000 521 190 541 2182;2183;2184;2185;2186 1797;1798;1799 1799 2 1911100 6975300 11965000 AGTLLPVIQFLQK THKLLMLHGQKLKSRAGTLLPVIQFLQKSI SRAGTLLPVIQFLQKSIQRHLDDLSKLCSW R A G Q K S 1 0 0 0 0 2 0 1 0 1 3 1 0 1 1 0 1 0 0 1 0 0 13 0 1426.8548 Q15269 Q15269 838 850 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 0.00029663 136.21 By MS/MS By MS/MS 3.75 2.22 2 1 1 1 2 1 4 4 62985000 0 51075000 11910000 522 1352 542 2187;2188;2189;2190;2191;2192;2193;2194 1800;1801;1802;1803 1801 4 0 22934000 2346800 AGTLQLTVER RVDSLQRQVADSEVKAGTLQLTVERLNGAL DSEVKAGTLQLTVERLNGALAKVEESEGAL K A G E R L 1 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 10 0 1086.6033 Q5TZA2 Q5TZA2 1700 1709 CROCC Rootletin yes yes 2 0.025499 79.893 By MS/MS 1 0 1 1 5323200 0 0 5323200 523 1458 543 2195 1804 1804 1 0 0 1147000 AGTLSITEFADMLSGNAGGFR IAKNLIDRSALDQYRAGTLSITEFADMLSG TEFADMLSGNAGGFRSRSSSVGSSSSYPIS R A G F R S 3 1 1 1 0 0 1 4 0 1 2 0 1 2 0 2 2 0 0 0 0 0 21 0 2114.0103 Q15149 Q15149 4361 4381 PLEC Plectin yes yes 2;3 1.0105E-13 132.86 By MS/MS By MS/MS 1 0 3 1 2 9359400 0 1030500 8328900 524 1348 544 2196;2197;2198 1805;1806;1807 1806 3 0 503690 1794600 AGTLTVEELGATLTSLLAQAQAQAR EVSEDRRQDLLSRYRAGTLTVEELGATLTS ATLTSLLAQAQAQARAEAEAGSPRPDPREA R A G A R A 6 1 0 0 0 3 2 2 0 0 5 0 0 0 0 1 4 0 0 1 0 0 25 0 2512.3497 P58107 P58107 2477 2501 EPPK1 Epiplakin yes no 2;3 1.1676E-24 128.9 By MS/MS By MS/MS 1.71 0.7 3 3 1 3 4 90805000 0 16997000 73808000 525 958 545 2199;2200;2201;2202;2203;2204;2205 1808;1809;1810;1811;1812;1813 1810 6 0 8286600 16523000 AGTQIENIDEDFRDGLK QRKTFTAWCNSHLRKAGTQIENIDEDFRDG TQIENIDEDFRDGLKLMLLLEVISGERLPK K A G L K L 1 1 1 3 0 1 2 2 0 2 1 1 0 1 0 0 1 0 0 0 0 0 17 1 1919.9225 O43707 O43707 67 83 ACTN4 Alpha-actinin-4 yes yes 3 7.5831E-06 106.19 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 47119000 0 19394000 27725000 526 210 546 2206;2207;2208 1814;1815 1815 2 0 8733200 6231700 AGTQIENIEEDFRDGLK QRKTFTAWCNSHLRKAGTQIENIEEDFRDG TQIENIEEDFRDGLKLMLLLEVISGERLAK K A G L K L 1 1 1 2 0 1 3 2 0 2 1 1 0 1 0 0 1 0 0 0 0 0 17 1 1933.9381 P12814 P12814 48 64 ACTN1 Alpha-actinin-1 yes yes 3 0.0014965 73.252 By MS/MS 2 0 1 1 3319300 0 3319300 0 527 540 547 2209 1816 1816 1 0 1494700 0 AGTVVLDDVELR ______________________________ ______________________________ M A G L R E 1 1 0 2 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 3 0 0 12 0 1285.6878 P25205 P25205 2 13 MCM3 DNA replication licensing factor MCM3 yes yes 2 0.0056812 91.584 By MS/MS By matching 7.33 0.471 2 1 1 2 5470800 0 529590 4941300 528 655 548 2210;2211;2212 1817 1817 1 0 304090 796600 AGTYFSNQAVR FFTGVVDFMHLDPKKAGTYFSNQAVRACIL DPKKAGTYFSNQAVRACILCVHPRTRVVHL K A G V R A 2 1 1 0 0 1 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 0 11 0 1212.5887 Q14690 Q14690 318 328 PDCD11 Protein RRP5 homolog yes yes 2 0.0077987 95.502 By matching By MS/MS 1 0 2 1 1 18395000 2196100 0 16199000 529 1314 549 2213;2214 1818 1818 1 2196100 0 3490300 AGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAK ______________________________ DREEGAASTAEEAAKKKRRKKKKSKGPSAA M A G A K K 8 1 1 4 0 0 6 4 1 0 2 1 0 0 1 3 1 0 0 2 0 0 35 1 3467.5561 P50579 P50579 2 36 METAP2 Methionine aminopeptidase 2 yes yes 3 7.3364E-50 129.13 By MS/MS 4 0 1 1 16529000 0 0 16529000 530 881 550 2215 1819 1819 1 0 0 2699800 AGVFPYR ______________________________ ______________________________ M A G Y R G 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 7 0 808.42317 Q6P2Q9 Q6P2Q9 2 8 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0076979 109.88 By MS/MS 1 0 1 1 3641100 0 3641100 0 531 1490 551 2216 1820 1820 1 0 1779700 0 AGVIFPVGR RGGKKKSTKTSRSAKAGVIFPVGRMLRYIK TSRSAKAGVIFPVGRMLRYIKKGHPKYRIG K A G G R M 1 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 2 0 0 9 0 914.53379 Q9P0M6;O75367 O75367 19 27 H2AFY2;H2AFY Core histone macro-H2A.2;Core histone macro-H2A.1 no no 2 0.0022497 104.76 By MS/MS By MS/MS By MS/MS 4.6 2.82 3 1 2 1 3 2 1 2 2 5 8 1028200000 30964000 227210000 770020000 532 253;2117 552 2217;2218;2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231 1821;1822;1823;1824;1825;1826;1827;1828;1829;1830;1831;1832;1833;1834;1835 1830 15 25003000 91352000 124250000 AGVLAHLEEER DSNLYRIGQSKVFFRAGVLAHLEEERDLKI VFFRAGVLAHLEEERDLKITDVIIGFQACC R A G E R D 2 1 0 0 0 0 3 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1222.6306 P35579;P35580 P35579 765 775 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 0.00032809 128.6 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 436180000 0 204980000 231190000 533 752;753 553 2232;2233;2234;2235;2236;2237;2238;2239 1836;1837;1838;1839;1840;1841;1842 1840 7 0 99681000 50003000 AGVLGGPATPASGPGPASAEPAVTEPGLGPDPK YELQMLRHRHEALARAGVLGGPATPASGPG AEPAVTEPGLGPDPKDTIIDVVGAPLTPNS R A G P K D 6 0 0 1 0 0 2 7 0 0 2 1 0 0 8 2 2 0 0 2 0 0 33 0 2921.4771 Q9NPF5 Q9NPF5 401 433 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 3 0.057241 32.312 By MS/MS 4 0 1 1 13080000 0 0 13080000 534 2027 554 2240 1843 1843 0 0 0 2136500 AGVMALANLLQIQR AEPLINLDVNNPDFKAGVMALANLLQIQRH KAGVMALANLLQIQRHDDYLVMLKAIRILV K A G Q R H 3 1 1 0 0 2 0 1 0 1 3 0 1 0 0 0 0 0 0 1 0 0 14 0 1496.8497 Q9Y224 Q9Y224 132 145 C14orf166 UPF0568 protein C14orf166 yes yes 2;3 1.2796E-24 196.88 By MS/MS By MS/MS 6.92 0.862 4 6 1 1 5 7 104580000 0 16474000 88105000 535 2227 555;556 2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252 1844;1845;1846;1847;1848;1849;1850;1851 1844 722 8 0 8118800 15213000 AGVNTVTTLVENK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA LRAGVNTVTTLVENKKAQLVVIAHDVDPIE R A G N K K 1 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 3 0 0 3 0 0 13 0 1344.7249 P62424 P62424 138 150 RPL7A 60S ribosomal protein L7a yes yes 2;3 0.00014165 151.22 By MS/MS By MS/MS By MS/MS 5.93 2.12 2 1 1 3 4 2 1 3 4 7 857770000 102280000 142130000 613370000 536 1026 557 2253;2254;2255;2256;2257;2258;2259;2260;2261;2262;2263;2264;2265;2266 1852;1853;1854;1855;1856;1857;1858;1859;1860;1861 1854 10 95545000 53430000 95590000 AGVNTVTTLVENKK AGKGDVPTKRPPVLRAGVNTVTTLVENKKA RAGVNTVTTLVENKKAQLVVIAHDVDPIEL R A G K K A 1 0 2 0 0 0 1 1 0 0 1 2 0 0 0 0 3 0 0 3 0 0 14 1 1472.8199 P62424 P62424 138 151 RPL7A 60S ribosomal protein L7a yes yes 2;3 0.00045919 146.11 By MS/MS By MS/MS 7.08 1.54 1 4 4 1 2 1 6 7 493700000 0 123780000 369920000 537 1026 558 2267;2268;2269;2270;2271;2272;2273;2274;2275;2276;2277;2278;2279 1862;1863;1864;1865;1866;1867;1868;1869;1870;1871 1863 10 0 45671000 61006000 AGVPLPPNLKPAPPPTIEEK LLEIAKANAAAMCAKAGVPLPPNLKPAPPP PPNLKPAPPPTIEEKVAKKSGGATIEELTE K A G E K V 2 0 1 0 0 0 2 1 0 1 2 2 0 0 7 0 1 0 0 1 0 0 20 1 2064.1619 P18583 P18583 2073 2092 SON Protein SON yes yes 3 0.008568 47.016 By MS/MS By MS/MS 1 0 2 1 1 10717000 0 3426400 7290300 538 596 559 2280;2281 1872;1873 1872 2 0 1674800 1570800 AGVQSVGEKESLEAAK DDEEKGEGTPREEGKAGVQSVGEKESLEAA GVQSVGEKESLEAAKEKKKEDDDGEIDDGE K A G A K E 3 0 0 0 0 1 3 2 0 0 1 2 0 0 0 2 0 0 0 2 0 0 16 1 1601.8261 Q86VM9 Q86VM9 169 184 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 3 0.061998 36.029 By MS/MS 1.5 0.5 1 1 2 15351000 0 0 15351000 539 1553 560 2282;2283 1874 1874 1 0 0 3373700 AGVSFSGHR ______________________________ ______________________________ M A G H R L 1 1 0 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 1 0 0 9 0 916.45151 Q16643 Q16643 2 10 DBN1 Drebrin yes yes 2 0.00025461 132.08 By MS/MS By MS/MS 5.86 3.36 1 2 1 1 2 4 3 35743000 0 29205000 6537800 540 1395 561 2284;2285;2286;2287;2288;2289;2290 1875;1876;1877 1875 3 0 18264000 6523000 AGVSVKPFQVK QVVGKLIEVVKKKNKAGVSVKPFQVKNHIW KKNKAGVSVKPFQVKNHIWVFINCLIENPT K A G V K N 1 0 0 0 0 1 0 1 0 0 0 2 0 1 1 1 0 0 0 3 0 0 11 1 1158.6761 Q02880 Q02880 368 378 TOP2B DNA topoisomerase 2-beta yes yes 2 0.033473 103.01 By MS/MS 1 0 1 1 17756000 0 0 17756000 541 1150 562 2291 1878;1879 1878 2 0 0 3825800 AGVVGPELHEQLLSAEK DPVRNQRLYVHEAVKAGVVGPELHEQLLSA VVGPELHEQLLSAEKAVTGYRDPYSGSTIS K A G E K A 2 0 0 0 0 1 3 2 1 0 3 1 0 0 1 1 0 0 0 2 0 0 17 0 1775.9418 Q15149 Q15149 3552 3568 PLEC Plectin yes yes 3 0.0011038 74.147 By MS/MS 1 0 1 1 9750700 0 9750700 0 542 1348 563 2292 1880 1880 1 0 4766000 0 AGYKPVAIQTYPILGEK ______________________________ YKPVAIQTYPILGEKITQDTLYWNNYKTPV M A G E K I 2 0 0 0 0 1 1 2 0 2 1 2 0 0 2 0 1 0 2 1 0 0 17 1 1847.0193 Q8TED0 Q8TED0 2 18 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 6.0497E-07 156.52 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 57196000 0 23272000 33923000 543 1665 564 2293;2294;2295 1881;1882;1883;1884;1885 1881 5 0 7723200 5726300 AGYSTDESSSSSLHATR FRPPGSGRGSGGSDKAGYSTDESSSSSLHA YSTDESSSSSLHATRTYGGSYGGRGRGRRT K A G T R T 2 1 0 1 0 0 1 1 1 0 1 0 0 0 0 6 2 0 1 0 0 0 17 0 1754.7707 P51116 P51116 407 423 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 0.00044473 84.859 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 43335000 0 6964100 36371000 544 888 565 2296;2297;2298;2299;2300 1886;1887;1888 1888 3 0 3136000 7112000 AHATLLGLANMETR HLSWLHEINSQELEKAHATLLGLANMETRY KAHATLLGLANMETRYFAKKKTLLGLSKLA K A H T R Y 3 1 1 0 0 0 1 1 1 0 3 0 1 0 0 0 2 0 0 0 0 0 14 0 1496.7769 Q8WUM0 Q8WUM0 949 962 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.00014279 113.69 By matching By MS/MS 1.33 0.471 2 1 1 2 13865000 2307200 0 11558000 545 1675 566 2301;2302;2303 1889 1889 1 2307200 0 2595100 AHEVGAQGGPPVAQVEQDLPISR DAGAEWAAAVLKQERAHEVGAQGGPPVAQV GPPVAQVEQDLPISRENLTDLVVDTDTLGE R A H S R E 3 1 0 1 0 3 2 3 1 1 1 0 0 0 3 1 0 0 0 3 0 0 23 0 2354.1979 Q14676 Q14676 620 642 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.0076267 53.551 By MS/MS 1 0 1 1 4344500 0 4344500 0 546 1310 567 2304 1890 1890 0 0 2123500 0 AHGLLAEENR AEKASYAEQLSMLKKAHGLLAEENRGLGER SMLKKAHGLLAEENRGLGERANLGRQFLEV K A H N R G 2 1 1 0 0 0 2 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1108.5625 Q14980 Q14980 1443 1452 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0063574 95.358 By MS/MS 1 0 2 2 7070300 0 0 7070300 547 1327 568 2305;2306 1891;1892 1891 1 0 0 1523400 AHGPGLEGGLVGKPAEFTIDTK YTVEASLPPDPSKVKAHGPGLEGGLVGKPA GGLVGKPAEFTIDTKGAGTGGLGLTVEGPC K A H T K G 2 0 0 1 0 0 2 5 1 1 2 2 0 1 2 0 2 0 0 1 0 0 22 1 2193.143 O75369 O75369 1045 1066 FLNB Filamin-B yes yes 4 0.0044671 45.992 By MS/MS 1 0 1 1 5662000 0 5662000 0 548 254 569 2307 1893 1893 1 0 2767500 0 AHIAFKPTVAQQR GHFDGVPVVSKGPQKAHIAFKPTVAQQRKC QKAHIAFKPTVAQQRKCLNCSETMVDGELV K A H Q R K 3 1 0 0 0 2 0 0 1 1 0 1 0 1 1 0 1 0 0 1 0 0 13 1 1465.8154 CON__Q9TRI1 CON__Q9TRI1 247 259 yes yes 3 0.0075183 74.21 By MS/MS 3.5 0.5 1 1 2 13450000 0 0 13450000 + 549 99 570 2308;2309 1894;1895 1895 2 0 0 2468900 AHLGTALK SHRRDQKWHDKQYKKAHLGTALKANPFGGA HDKQYKKAHLGTALKANPFGGASHAKGIVL K A H L K A 2 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 809.47594 P62266 P62266 30 37 RPS23 40S ribosomal protein S23 yes yes 2 0.0017838 111.04 By matching By matching By MS/MS 6.83 1.07 1 1 2 2 1 3 2 9568200 354800 2405200 6808300 550 1013 571 2310;2311;2312;2313;2314;2315 1896;1897 1897 2 284240 1193800 1151800 AHLLADMAHISGLVAAK LIDYARMREVCDEVKAHLLADMAHISGLVA LLADMAHISGLVAAKVIPSPFKHADIVTTT K A H A K V 5 0 0 1 0 0 0 1 2 1 3 1 1 0 0 1 0 0 0 1 0 0 17 0 1716.9345 P34897 P34897 246 262 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2;3;4 6.3749E-06 149.69 By MS/MS By MS/MS 4.25 0.661 1 4 3 2 6 100240000 0 16437000 83801000 551 734 572 2316;2317;2318;2319;2320;2321;2322;2323 1898;1899;1900;1901;1902 1900 5 0 5078900 13566000 AHLLLQAHLSR PIESNPHSFDSPHTKAHLLLQAHLSRAMLP PHTKAHLLLQAHLSRAMLPCPDYDTDTKTV K A H S R A 2 1 0 0 0 1 0 0 2 0 4 0 0 0 0 1 0 0 0 0 0 0 11 0 1257.7306 Q8N3C0 Q8N3C0 1891 1901 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.0034408 84.896 By MS/MS 1 0 1 1 11503000 0 0 11503000 552 1602 573 2324 1903 1903 1 0 0 2478500 AHLMEIQVNGGTVAEK IAHTQMRLLPLRQKKAHLMEIQVNGGTVAE HLMEIQVNGGTVAEKLDWARERLEQQVPVN K A H E K L 2 0 1 0 0 1 2 2 1 1 1 1 1 0 0 0 1 0 0 2 0 0 16 0 1695.8614 P39023 P39023 178 193 RPL3 60S ribosomal protein L3 yes yes 2;3 1.4359E-18 190.1 By MS/MS By MS/MS 5 0.535 1 5 1 3 4 116470000 0 73305000 43165000 553 778 574;575 2325;2326;2327;2328;2329;2330;2331 1904;1905;1906;1907;1908;1909 1906 387 6 0 18896000 6256000 AHLSENELEALEK QLSGLHKQNLEIHRRAHLSENELEALEKND RRAHLSENELEALEKNDMEQMKYRDRAAER R A H E K N 2 0 1 0 0 0 4 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1481.7362 P98175 P98175 794 806 RBM10 RNA-binding protein 10 yes yes 2 6.785E-05 156.14 By MS/MS 2 0 1 1 5070800 0 0 5070800 554 1117 576 2332 1910 1910 1 0 0 1145900 AHLTNQYMQR KPLYVALAQRKEERKAHLTNQYMQRVAGMR KEERKAHLTNQYMQRVAGMRALPANAILNQ K A H Q R V 1 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 10 0 1260.6033 Q13310 Q13310 376 385 PABPC4 Polyadenylate-binding protein 4 yes yes 3 0.013986 66.962 By MS/MS 3 0 1 1 9896800 0 9896800 0 555 1237 577 2333 1911 1911 1 0 4219000 0 AHLTVGQAAAGGSGNLLTER REAGPSVAVDSSGRRAHLTVGQAAAGGSGN GQAAAGGSGNLLTERSTFTDSQLGNADMEM R A H E R S 4 1 1 0 0 1 1 4 1 0 3 0 0 0 0 1 2 0 0 1 0 0 20 0 1921.997 Q99959 Q99959 317 336 PKP2 Plakophilin-2 yes yes 2;3 2.3059E-36 204.28 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 16238000 0 6993900 9244000 556 1870 578 2334;2335;2336;2337 1912;1913 1913 1 0 3064800 1712400 AHMGMFTELAILYSK EELITMLEAALGLERAHMGMFTELAILYSK AHMGMFTELAILYSKFKPQKMREHLELFWS R A H S K F 2 0 0 0 0 0 1 1 1 1 2 1 2 1 0 1 1 0 1 0 0 0 15 0 1710.8473 Q00610;P53675 Q00610 1312 1326 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 0.00031699 117.98 By MS/MS 1.33 0.471 2 1 3 15391000 0 0 15391000 557 1125 579 2338;2339;2340 1914;1915;1916 1914 2 0 0 3354700 AHNGSLQHLTWLGLQWNSLPALPGIR PELEDLTRYDVGAIRAHNGSLQHLTWLGLQ LGLQWNSLPALPGIRKWLKQLFHHLPHETS R A H I R K 2 1 2 0 0 2 0 3 2 1 6 0 0 0 2 2 1 2 0 0 0 0 26 0 2878.5355 A6NKT7;Q7Z3J3;O14715;Q99666;P49792 P49792 429 454 RGPD3;RGPD4;RGPD8;RGPD5;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;E3 SUMO-protein ligase RanBP2 no no 4 0.0004065 48.286 By MS/MS 1.5 0.5 1 1 2 2285600 0 0 2285600 558 871;17 580 2341;2342 1917 1917 1 0 0 503730 AHNNELEPTPGNTLR TIKKAKQDVIEVIEKAHNNELEPTPGNTLR AHNNELEPTPGNTLRQTFENQVNRILNDAR K A H L R Q 1 1 3 0 0 0 2 1 1 0 2 0 0 0 2 0 2 0 0 0 0 0 15 0 1661.8121 P24928 P24928 720 734 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 3 0.012333 56.397 By MS/MS By MS/MS 1 0 2 1 1 17179000 0 6608900 10570000 559 653 581 2343;2344 1918;1919 1919 2 0 3230300 2277400 AHQVVEDGYEFFAK VAKFLHKHDLDLICRAHQVVEDGYEFFAKR RAHQVVEDGYEFFAKRQLVTLFSAPNYCGE R A H A K R 2 0 0 1 0 1 2 1 1 0 0 1 0 2 0 0 0 0 1 2 0 0 14 0 1638.7678 P62140;P62136;P36873 P62136 247 260 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2;3 1.0855E-11 182.23 By MS/MS By MS/MS 5.67 0.471 2 4 2 4 150750000 0 11763000 138990000 560 1006;1007;763 582 2345;2346;2347;2348;2349;2350 1920;1921;1922;1923;1924 1923 5 0 4072100 20555000 AHSFLMDFIHQVGLFGR NTSLIILHQLEDKMKAHSFLMDFIHQVGLF SFLMDFIHQVGLFGRLGSFPVRGTPMATRL K A H G R L 1 1 0 1 0 1 0 2 2 1 2 0 1 3 0 1 0 0 0 1 0 0 17 0 1973.9934 Q8WUM0 Q8WUM0 607 623 NUP133 Nuclear pore complex protein Nup133 yes yes 3 9.4397E-10 165.86 By MS/MS 2.5 0.5 1 1 2 3230000 0 0 3230000 561 1675 583 2351;2352 1925 1925 1 0 0 709750 AHSIQIMK VTQCYRDMGARHRARAHSIQIMKVEEIAAS GARHRARAHSIQIMKVEEIAASKCRRPAVK R A H M K V 1 0 0 0 0 1 0 0 1 2 0 1 1 0 0 1 0 0 0 0 0 0 8 0 926.50077 Q02543 Q02543 121 128 RPL18A 60S ribosomal protein L18a yes yes 2 0.00069373 126.28 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 76955000 0 23049000 53905000 562 1147 584;585 2353;2354;2355;2356;2357 1926;1927;1928 1927 552 3 0 12815000 9565200 AHTMTDDVTFWK KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS KMKAHTMTDDVTFWKWISLNTVALVTDNAV K A H W K W 1 0 0 2 0 0 0 0 1 0 0 1 1 1 0 0 3 1 0 1 0 0 12 0 1450.6551 Q00610 Q00610 101 112 CLTC Clathrin heavy chain 1 yes yes 2;3 2.5335E-58 232.88 By matching By MS/MS 1.67 0.745 3 2 1 1 5 73748000 0 2163300 71584000 563 1125 586 2358;2359;2360;2361;2362;2363 1929;1930;1931;1932 1929 4 0 1057400 15531000 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR LDGRRIRVDYSITKRAHTPTPGIYMGRPTH GGGGGGGGGGGGGGRRRDSYYDRGYDRGYD R A H G R R 1 2 0 0 0 0 0 18 2 1 0 0 1 0 3 1 3 0 1 0 0 0 33 1 2790.2753 Q13595 Q13595 200 232 TRA2A Transformer-2 protein homolog alpha yes yes 4;5 4.0028E-42 124.03 By MS/MS 5.67 0.471 1 2 3 19548000 0 19548000 0 564 1260 587 2364;2365;2366 1933;1934 1934 2 0 6702600 0 AHVQEVAQHNLK GKWLQDLQEENESLKAHVQEVAQHNLKEAS SLKAHVQEVAQHNLKEASSASQFEELEIVL K A H L K E 2 0 1 0 0 2 1 0 2 0 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1372.7211 Q86UP2 Q86UP2 909 920 KTN1 Kinectin yes yes 3 0.0020739 92.247 By MS/MS 1.5 0.5 1 1 2 3710400 0 0 3710400 565 1549 588 2367;2368 1935;1936;1937 1937 3 0 0 821840 AHWTPFEGQK LEHEWTIPSHMPFSKAHWTPFEGQKVKGTV MPFSKAHWTPFEGQKVKGTVRRVVLRGEVA K A H Q K V 1 0 0 0 0 1 1 1 1 0 0 1 0 1 1 0 1 1 0 0 0 0 10 0 1199.5724 P27708 P27708 1769 1778 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.00092417 111.82 By MS/MS 1 0 1 1 10986000 0 10986000 0 566 681 589 2369 1938 1938 1 0 5369800 0 AIADTGANVVVTGGK NFSKGEENLMDAQVKAIADTGANVVVTGGK AIADTGANVVVTGGKVADMALHYANKYNIM K A I G K V 3 0 1 1 0 0 0 3 0 1 0 1 0 0 0 0 2 0 0 3 0 0 15 0 1371.7358 P50990 P50990 282 296 CCT8 T-complex protein 1 subunit theta yes yes 2 0.00029146 122.55 By matching By MS/MS By MS/MS 4 0 3 1 1 1 38948000 6345900 17899000 14703000 567 885 590 2370;2371;2372 1939;1940 1939 2 4950900 5940000 2401500 AIAELGIYPAVDPLDSTSR ATTFAHLDATTVLSRAIAELGIYPAVDPLD LGIYPAVDPLDSTSRIMDPNIVGSEHYDVA R A I S R I 3 1 0 2 0 0 1 1 0 2 2 0 0 0 2 2 1 0 1 1 0 0 19 0 1987.0262 P06576 P06576 388 406 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 0.0016474 75.088 By MS/MS By matching By MS/MS 3.5 0.5 2 2 2 1 1 34751000 9976500 1691700 23083000 568 444 591 2373;2374;2375;2376 1941;1942 1942 2 8332300 721170 3770100 AIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFK SPEVVRKMGDKVEARAIAIAAGVPVVPGTD AHEFSNTYGFPIIFKAAYGGGGRGMRVVHS R A I F K A 6 0 1 1 0 0 2 3 2 5 1 1 0 3 4 2 3 0 1 3 0 0 38 0 3950.0618 P11498 P11498 157 194 PC Pyruvate carboxylase, mitochondrial yes yes 4 0.025791 20.907 By MS/MS 2 0 1 1 2313200 0 0 2313200 569 527 592 2377 1943 1943 1 0 0 522740 AIANLYGPLMALNHMVQQDYFPK LLVHMGLLKSEDKVKAIANLYGPLMALNHM LMALNHMVQQDYFPKALAPLLLAFVTKPNS K A I P K A 3 0 2 1 0 2 0 1 1 1 3 1 2 1 2 0 0 0 2 1 0 0 23 0 2633.3134 P46060 P46060 531 553 RANGAP1 Ran GTPase-activating protein 1 yes yes 3 1.1043E-09 93.006 By MS/MS 3 0 1 1 9121300 0 0 9121300 570 822 593 2378 1944 1944 1 0 0 1769100 AIAYHVLAAYYSHLEGAR GLTVTALSSYDPQMRAIAYHVLAAYYSHLE YHVLAAYYSHLEGARFQEQSQLLYLLDVVR R A I A R F 5 1 0 0 0 0 1 1 2 1 2 0 0 0 0 1 0 0 3 1 0 0 18 0 2004.0217 O60287 O60287 1684 1701 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 8.1392E-05 95.767 By MS/MS 1 0 1 1 4903000 0 0 4903000 571 224 594 2379 1945 1945 1 0 0 1056400 AIAYLFPSGLFEK MGEDPETFTQEDIDRAIAYLFPSGLFEKRA DRAIAYLFPSGLFEKRARPVMKHPEQIFPR R A I E K R 2 0 0 0 0 0 1 1 0 1 2 1 0 2 1 1 0 0 1 0 0 0 13 0 1454.781 P82933 P82933 107 119 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 2 0.0003305 140.49 By matching By MS/MS By MS/MS 5.8 0.748 2 2 1 1 1 3 16365000 372920 2948000 13044000 572 1104 595 2380;2381;2382;2383;2384 1946;1947;1948 1947 3 298750 1020500 1904700 AIDLMNALMR NKKMKRNLRKILDSKAIDLMNALMRLNQIR ILDSKAIDLMNALMRLNQIRPGLQYKLLSQ K A I M R L 2 1 1 1 0 0 0 0 0 1 2 0 2 0 0 0 0 0 0 0 0 0 10 0 1146.5889 Q96SI9 Q96SI9 385 394 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 8.444E-11 166.17 By MS/MS By MS/MS 3.75 0.829 2 1 1 3 1 9932600 0 6562400 3370200 573 1834 596 2385;2386;2387;2388 1949;1950;1951 1949 2 0 2522500 653660 AIEALHGHELRPGR QFAFVHMRENAGALRAIEALHGHELRPGRA RAIEALHGHELRPGRALVVEMSRPRPLNTW R A I G R A 2 2 0 0 0 0 2 2 2 1 2 0 0 0 1 0 0 0 0 0 0 0 14 1 1554.8379 Q96PK6 Q96PK6 51 64 RBM14 RNA-binding protein 14 yes yes 3 9.1582E-05 126.95 By matching By MS/MS By MS/MS 5 1.69 1 2 1 1 2 1 1 5 47730000 2335600 6029900 39365000 574 1818 597 2389;2390;2391;2392;2393;2394;2395 1952;1953;1954;1955;1956 1955 5 1822200 3462400 6811800 AIEALKEFNEDGALAVLQQFK IYVAGLVAHSDLDERAIEALKEFNEDGALA EFNEDGALAVLQQFKDSDLSHVQNKSAFLC R A I F K D 4 0 1 1 0 2 3 1 0 1 3 2 0 2 0 0 0 0 0 1 0 0 21 1 2333.2267 O60506 O60506 61 81 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 3 5.7631E-08 102.37 By MS/MS 3 0 1 1 8127900 0 0 8127900 575 227 598 2396 1957 1957 1 0 0 1576400 AIEDEGGNPDEIEITSEGNKK DSSGNKSVLMERLKKAIEDEGGNPDEIEIT GNPDEIEITSEGNKKTSKRSSKGRKPEEEG K A I K K T 1 0 2 2 0 0 5 3 0 3 0 2 0 0 1 1 1 0 0 0 0 0 21 1 2244.0394 Q15424 Q15424 64 84 SAFB Scaffold attachment factor B1 yes yes 2;3 1.359E-140 271.08 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 215650000 0 34230000 181420000 576 1364 599 2397;2398;2399;2400;2401;2402 1958;1959;1960;1961;1962 1962 5 0 15609000 40410000 AIEDGNLEEMEEEVR DVDYSDALTEKQWLRAIEDGNLEEMEEEVR AIEDGNLEEMEEEVRLKKRKRRRNVDKDPA R A I V R L 1 1 1 1 0 0 6 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 15 0 1761.7727 P51531 P51531 1328 1342 SMARCA2 Probable global transcription activator SNF2L2 yes yes 2 0.00029158 122.45 By MS/MS 1.5 0.5 1 1 2 4750100 0 0 4750100 577 893 600 2403;2404 1963 1963 1 0 0 1037700 AIEEQMVAAK IIRKVVKLFNEVQEKAIEEQMVAAKDVVME EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL K A I A K D 3 0 0 0 0 1 2 0 0 1 0 1 1 0 0 0 0 0 0 1 0 0 10 0 1088.5536 Q9H0A0 Q9H0A0 913 922 NAT10 N-acetyltransferase 10 yes yes 2 0.0017931 107.9 By MS/MS By MS/MS 2 0 2 1 1 18243000 0 0 18243000 578 1959 601 2405;2406 1964;1965 1965 2 0 0 4122600 AIEFLNNPPEEAPR GFAFVEFETKEQAAKAIEFLNNPPEEAPRK KAIEFLNNPPEEAPRKPGIFPKTVKNKPIP K A I P R K 2 1 2 0 0 0 3 0 0 1 1 0 0 1 3 0 0 0 0 0 0 0 14 0 1595.7944 Q4G0J3 Q4G0J3 182 195 LARP7 La-related protein 7 yes yes 2 0.00036778 131.42 By MS/MS 3 0 1 1 11575000 0 0 11575000 579 1418 602 2407 1966 1966 1 0 0 2244900 AIEINPDSAQPYK VKLQKPNAAIRDCDRAIEINPDSAQPYKRR DRAIEINPDSAQPYKRRGKAHRLLGHWEEA R A I Y K R 2 0 1 1 0 1 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 0 13 0 1444.7198 Q8IZP2;P50502;Q8NFI4 Q8IZP2 170 182 ST13P4;ST13;ST13P5 Putative protein FAM10A4;Hsc70-interacting protein;Putative protein FAM10A5 yes no 2 0.00091297 115.78 By MS/MS By MS/MS 5 0 2 1 1 16020000 0 3713300 12307000 580 880 603 2408;2409 1967;1968 1968 2 0 957180 1716600 AIELFSVGQGPAK KMNSLPAERIQEIQKAIELFSVGQGPAKTM QKAIELFSVGQGPAKTMEEASKRSYQFWDT K A I A K T 2 0 0 0 0 1 1 2 0 1 1 1 0 1 1 1 0 0 0 1 0 0 13 0 1315.7136 P30419 P30419 95 107 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 3.2707E-11 176.38 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 40714000 0 33106000 7607800 581 714 604 2410;2411;2412 1969;1970 1969 2 0 11058000 1475500 AIEMFMNK AGHHAEVVVDPEDERAIEMFMNKNPPARRT VDPEDERAIEMFMNKNPPARRTLADIIMEK R A I N K N 1 0 1 0 0 0 1 0 0 1 0 1 2 1 0 0 0 0 0 0 0 0 8 0 982.46161 Q13895 Q13895 132 139 BYSL Bystin yes yes 2 0.05447 71.852 By MS/MS 5 0 1 1 4611600 0 0 4611600 582 1276 605 2413 1971 1971 1 0 0 643230 AIEPPPLDAVIEAEHTLR IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH PPPLDAVIEAEHTLRELDALDANDELTPLG K A I L R E 3 1 0 1 0 0 3 0 1 2 2 0 0 0 3 0 1 0 0 1 0 0 18 0 1970.0473 Q08211 Q08211 820 837 DHX9 ATP-dependent RNA helicase A yes yes 3 2.5558E-09 139.04 By MS/MS By MS/MS By MS/MS 2.33 1.33 3 3 1 1 1 1 3 5 390260000 1513700 114300000 274440000 583 1182 606 2414;2415;2416;2417;2418;2419;2420;2421;2422 1972;1973;1974;1975;1976;1977;1978;1979;1980;1981;1982;1983 1981 11 1823800 52263000 59999000 AIETAPLSFR LTKVPQRALELDKNRAIETAPLSFRTLVGL LDKNRAIETAPLSFRTLVGLLGIEAALESL R A I F R T 2 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 10 0 1103.5975 Q6IPU0 Q6IPU0 254 263 CENPP Centromere protein P yes yes 2 0.00026954 123.16 By MS/MS 6 0 1 1 7015100 0 0 7015100 584 1478 607 2423 1984 1984 1 0 0 1049500 AIETFSGK GYAFVDCPDEHWAMKAIETFSGKVELQGKR DEHWAMKAIETFSGKVELQGKRLEIEHSVP K A I G K V 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 851.43888 Q9NZI8 Q9NZI8 53 60 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.041319 75.109 By MS/MS 2.5 0.5 1 1 2 10711000 0 10711000 0 585 2104 608 2424;2425 1985 1985 1 0 4589500 0 AIETTDIISR LGLKFNKIVHSSMTRAIETTDIISRHLPGV SSMTRAIETTDIISRHLPGVCKVSTDLLRE R A I S R H 1 1 0 1 0 0 1 0 0 3 0 0 0 0 0 1 2 0 0 0 0 0 10 0 1117.5979 Q96HS1 Q96HS1 153 162 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0064229 94.85 By matching By MS/MS By matching 5.25 0.829 1 1 2 2 1 1 106390000 16038000 18873000 71475000 586 1796 609 2426;2427;2428;2429 1986 1986 1 12764000 6533200 10693000 AIFAGYKR ______________________________ SGRLWSKAIFAGYKRGLRNQREHTALLKIE K A I K R G 2 1 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 1 924.51814 P18077 P18077 9 16 RPL35A 60S ribosomal protein L35a yes yes 2 0.035549 84.064 By MS/MS 9.5 0.5 1 1 2 3222000 0 3222000 0 587 593 610 2430;2431 1987 1987 1 0 5058200 0 AIFDQLMTFGIEPFK VLQIDDVTIKISALKAIFDQLMTFGIEPFK AIFDQLMTFGIEPFKTKKIKTLHCEGTEIN K A I F K T 1 0 0 1 0 1 1 1 0 2 1 1 1 3 1 0 1 0 0 0 0 0 15 0 1755.8906 Q9BPX3 Q9BPX3 644 658 NCAPG Condensin complex subunit 3 yes yes 2 4.9669E-25 199.43 By MS/MS 2.5 0.5 1 1 2 5949500 0 0 5949500 588 1873 611 2432;2433 1988;1989 1988 2 0 0 1299000 AIFEIVLNR ADMVYVTQSAGRLMRAIFEIVLNRGWAQLT AGRLMRAIFEIVLNRGWAQLTDKTLNLCKM R A I N R G 1 1 1 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 O75643 O75643 1094 1102 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 2.9455E-07 158.12 By MS/MS 1 0 1 1 23056000 0 0 23056000 589 277 612 2434 1990 1990 1 0 0 4967800 AIFLADGK VAEREKAHEGARPMRAIFLADGKVFTTGFS EGARPMRAIFLADGKVFTTGFSRMSERQLA R A I G K V 2 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 8 0 833.4647 Q9BR76 Q9BR76 226 233 CORO1B Coronin-1B yes yes 2 0.0095763 94.262 By MS/MS 4 0 1 1 3778900 0 3778900 0 590 1887 613 2435 1991 1991 1 0 1254100 0 AIFLADGNVFTTGFSR VAEKEKAHEGARPMRAIFLADGNVFTTGFS IFLADGNVFTTGFSRMSERQLALWNPKNMQ R A I S R M 2 1 1 1 0 0 0 2 0 1 1 0 0 3 0 1 2 0 0 1 0 0 16 0 1714.8679 Q9ULV4 Q9ULV4 224 239 CORO1C Coronin-1C yes yes 2 1.4541E-108 261.35 By MS/MS By MS/MS 3.56 1.57 1 2 1 2 2 1 4 5 144770000 0 41941000 102830000 591 2192 614 2436;2437;2438;2439;2440;2441;2442;2443;2444 1992;1993;1994;1995;1996;1997;1998;1999;2000;2001 2000 10 0 11761000 16773000 AIFQQPPVGVR LILPVHSNIPMMDQKAIFQQPPVGVRKIVL MDQKAIFQQPPVGVRKIVLATNIAETSITI K A I V R K 1 1 0 0 0 2 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 11 0 1210.6822 Q7L2E3 Q7L2E3 715 725 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.00032719 122.18 By matching By MS/MS 1.5 0.5 1 1 1 1 30383000 0 1402700 28980000 592 1522 615 2445;2446 2002 2002 1 0 685600 6548900 AIFSHAAGDNSTLLSFK SMAAGLERNGRMRVKAIFSHAAGDNSTLLS FSHAAGDNSTLLSFKEGDLITLLVPEARDG K A I F K E 3 0 1 1 0 0 0 1 1 1 2 1 0 2 0 3 1 0 0 0 0 0 17 0 1777.8999 Q9UQB8 Q9UQB8 381 397 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes yes 3 0.00037048 87.088 By MS/MS 4 0 1 1 7758200 0 7758200 0 593 2221 616 2447 2003 2003 1 0 2574600 0 AIFTTGQGASAVGLTAYVQR AKSQFLKYIEKVSSRAIFTTGQGASAVGLT GQGASAVGLTAYVQRHPVSREWTLEAGALV R A I Q R H 4 1 0 0 0 2 0 3 0 1 1 0 0 1 0 1 3 0 1 2 0 0 20 0 2010.0534 P49736 P49736 543 562 MCM2 DNA replication licensing factor MCM2 yes yes 2 5.7934E-17 164.81 By MS/MS By MS/MS 2 0 2 1 1 7909400 0 2717900 5191600 594 864 617 2448;2449 2004;2005 2004 2 0 1223900 1173200 AIGFVVGQTDWEK RWADLEEKKDADRKRAIGFVVGQTDWEKIT KRAIGFVVGQTDWEKITDESGHLAEKALNR R A I E K I 1 0 0 1 0 1 1 2 0 1 0 1 0 1 0 0 1 1 0 2 0 0 13 0 1448.73 P49750 P49750 2115 2127 YLPM1 YLP motif-containing protein 1 yes yes 2 0.00027762 133.81 By MS/MS 1 0 1 1 13448000 0 0 13448000 595 865 618 2450 2006 2006 1 0 0 2897500 AIGGGLSSSGGLSSSTIKYTTTSSSK SSHGLGGGFSAGSGRAIGGGLSSSGGLSSS LSSSTIKYTTTSSSKKSYRQ__________ R A I S K K 1 0 0 0 0 0 0 5 0 2 2 2 0 0 0 9 4 0 1 0 0 0 26 1 2433.2235 CON__P50446 CON__P50446 523 548 yes yes 3 0.037983 25.021 By MS/MS By matching 5.5 1.12 1 1 1 1 3 1 63629000 0 61401000 2228200 + 596 69 619 2451;2452;2453;2454 2007 2007 1 0 17958000 395380 AIGGGLSSVGGGSSTIK SGLGIGGGFSSSSGRAIGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A I I K Y 1 0 0 0 0 0 0 6 0 2 1 1 0 0 0 4 1 0 0 1 0 0 17 0 1446.7678 P02538;CON__P02538;CON__P48668;P48668 CON__P48668 534 550 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 2.3905E-10 174.21 By MS/MS By MS/MS By MS/MS 5 3.01 3 2 3 1 2 1 2 2 1 2 9 7 3 853570000 728420000 49214000 75930000 + 597 68;37 620 2455;2456;2457;2458;2459;2460;2461;2462;2463;2464;2465;2466;2467;2468;2469;2470;2471;2472;2473 2008;2009;2010;2011;2012;2013;2014;2015;2016;2017;2018;2019;2020;2021;2022;2023 2015 16 768690000 19571000 44196000 AIGGGLSSVGGGSSTIKYTTTSSSSR SGLGIGGGFSSSSGRAIGGGLSSVGGGSST GSSTIKYTTTSSSSRKSYKH__________ R A I S R K 1 1 0 0 0 0 0 6 0 2 1 1 0 0 0 8 4 0 1 1 0 0 26 1 2417.2034 P02538;CON__P02538;CON__P48668;P48668 CON__P48668 534 559 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 5.3511E-33 164.79 By MS/MS 8.33 1.7 1 1 1 3 34815000 34815000 0 0 + 598 68;37 621 2474;2475;2476 2024;2025;2026 2024 3 43214000 0 0 AIGNIELGIR LVVVGEIVTEEHLRRAIGNIELGIRSWDTN EHLRRAIGNIELGIRSWDTNLIECNLDQEL R A I I R S 1 1 1 0 0 0 1 2 0 3 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1054.6135 P46821 P46821 55 64 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 4.3741E-11 170.24 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 25594000 0 5181500 20413000 599 834 622 2477;2478 2027;2028 2028 2 0 2333300 4398200 AIGPHDVLATLLNNLK AIRRATVNTFGYIAKAIGPHDVLATLLNNL IGPHDVLATLLNNLKVQERQNRVCTTVAIA K A I L K V 2 0 2 1 0 0 0 1 1 1 4 1 0 0 1 0 1 0 0 1 0 0 16 0 1687.9621 O75533 O75533 1087 1102 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 3.5427E-284 339.5 By MS/MS By MS/MS 2.22 0.916 2 4 2 1 4 5 110300000 0 83673000 26629000 600 270 623 2479;2480;2481;2482;2483;2484;2485;2486;2487 2029;2030;2031;2032;2033;2034;2035;2036 2031 8 0 37574000 5785200 AIGSASEGAQSSLQEVYHK FHMDPSGTFVQCDARAIGSASEGAQSSLQE ASEGAQSSLQEVYHKSMTLKEAIKSSLIIL R A I H K S 3 0 0 0 0 2 2 2 1 1 1 1 0 0 0 4 0 0 1 1 0 0 19 0 1960.949 P28066 P28066 169 187 PSMA5 Proteasome subunit alpha type-5 yes yes 3 0.00062246 68.41 By MS/MS 7 0 1 1 9246900 0 9246900 0 601 685 624 2488 2037 2037 1 0 5309600 0 AIGVLTSGGDAQGMNAAVR GSLRKFLEHLSGAGKAIGVLTSGGDAQGMN LTSGGDAQGMNAAVRAVVRMGIYVGAKVYF K A I V R A 4 1 1 1 0 1 0 4 0 1 1 0 1 0 0 1 1 0 0 2 0 0 19 0 1786.8996 Q01813;P17858 Q01813 26 44 PFKP;PFKL ATP-dependent 6-phosphofructokinase, platelet type;ATP-dependent 6-phosphofructokinase, liver type yes no 2 2.3152E-23 193.23 By matching By MS/MS By matching 5 3.74 1 1 1 1 1 1 3 1 23954000 1409300 20670000 1874500 602 1139 625 2489;2490;2491;2492;2493 2038;2039;2040 2039 3 1409300 10267000 4099700 AIGYLIPLMDAEYANYYTR GIRQHRGKGLAAFLKAIGYLIPLMDAEYAN LIPLMDAEYANYYTREVMLILIREFQSPDE K A I T R E 3 1 1 1 0 0 1 1 0 2 2 0 1 0 1 0 1 0 4 0 0 0 19 0 2236.0874 O75533 O75533 749 767 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 1.8727E-09 140.68 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 7414400 0 689420 6725000 603 270 626 2494;2495;2496 2041;2042;2043 2043 2 0 310460 1480500 AIGYLNTGYQR YLNETQQLTPEIKSKAIGYLNTGYQRQLNY IKSKAIGYLNTGYQRQLNYKHYDGSYSTFG K A I Q R Q 1 1 1 0 0 1 0 2 0 1 1 0 0 0 0 0 1 0 2 0 0 0 11 0 1254.6357 P01023 P01023 1004 1014 A2M Alpha-2-macroglobulin yes yes 2 1.3821E-35 208.37 By MS/MS 4.83 3.44 1 1 1 1 1 1 6 40179000 40179000 0 0 604 370 627 2497;2498;2499;2500;2501;2502 2044;2045;2046;2047 2046 4 38122000 0 0 AIIASNIMYIVGQYPR DLLGLCEQKRGKDNKAIIASNIMYIVGQYP IIASNIMYIVGQYPRFLRAHWKFLKTVVNK K A I P R F 2 1 1 0 0 1 0 1 0 4 0 0 1 0 1 1 0 0 2 1 0 0 16 0 1807.9655 O14980 O14980 538 553 XPO1 Exportin-1 yes yes 2;3 8.2231E-08 163.9 By MS/MS 2 0 2 2 3889900 0 0 3889900 605 158 628 2503;2504 2048;2049 2049 2 0 0 879050 AIIIFVPVPQLK NITAAKEIEVGGGRKAIIIFVPVPQLKSFQ GRKAIIIFVPVPQLKSFQKIQVRLVRELEK K A I L K S 1 0 0 0 0 1 0 0 0 3 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1336.8482 P62081 P62081 59 70 RPS7 40S ribosomal protein S7 yes yes 2 0.0030791 107.47 By MS/MS By MS/MS 6.14 1.25 1 1 2 2 1 4 3 300990000 0 12714000 288270000 606 1005 629 2505;2506;2507;2508;2509;2510;2511 2050;2051;2052;2053;2054;2055;2056;2057 2054 8 0 6246700 50260000 AIILAAAPGEK VLQAGQYGVAQTRRRAIILAAAPGEKLPLF TRRRAIILAAAPGEKLPLFPEPLHVFAPRA R A I E K L 4 0 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 0 11 0 1052.623 P26358 P26358 1313 1323 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.02135 83.456 By MS/MS 1 0 1 1 19647000 0 0 19647000 607 667 630 2512 2058 2058 1 0 0 4233200 AIIVEFAQQGLNAALFYENKDPR KQKKNTKDEFEERAKAIIVEFAQQGLNAAL QGLNAALFYENKDPRTFVSLVPTSAHTGDG K A I P R T 4 1 2 1 0 2 2 1 0 2 2 1 0 2 1 0 0 0 1 1 0 0 23 1 2606.3493 O60841 O60841 793 815 EIF5B Eukaryotic translation initiation factor 5B yes yes 3;4 0.00083625 59.814 By MS/MS 1.67 0.471 1 2 3 17840000 0 0 17840000 608 236 631 2513;2514;2515 2059;2060;2061 2059 3 0 0 3991800 AIKVEQATKPSFESGR KDAARDMNGKSLDGKAIKVEQATKPSFESG IKVEQATKPSFESGRRGPPPPPRSRGPPRG K A I G R R 2 1 0 0 0 1 2 1 0 1 0 2 0 1 1 2 1 0 0 1 0 0 16 2 1746.9264 P38159 P38159 78 93 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes yes 2;3;4 3.2726E-06 156.69 By MS/MS By MS/MS 6.15 1.46 1 5 2 2 2 1 9 4 183260000 0 120590000 62671000 609 771 632 2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526;2527;2528 2062;2063;2064;2065;2066;2067;2068;2069;2070;2071 2064 10 0 44856000 8905500 AILAGAQPIEEMR PITSPIENIIAIYEKAILAGAQPIEEMRHT EKAILAGAQPIEEMRHTIVDILTMKSQEKA K A I M R H 3 1 0 0 0 1 2 1 0 2 1 0 1 0 1 0 0 0 0 0 0 0 13 0 1397.7337 Q8WWK9 Q8WWK9 487 499 CKAP2 Cytoskeleton-associated protein 2 yes yes 2 0.00014165 151.22 By matching By MS/MS By MS/MS 3.4 1.02 1 2 1 1 1 1 3 28819000 709730 2666800 25443000 610 1688 633 2529;2530;2531;2532;2533 2072;2073 2073 2 855140 1136900 4350700 AILNGIDSINK DLEKKQQLLRAATGKAILNGIDSINKVLDH ATGKAILNGIDSINKVLDHFRRKGINQHVQ K A I N K V 1 0 2 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1156.6452 Q9UQE7 Q9UQE7 504 514 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0073735 96.331 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 83817000 0 23148000 60668000 611 2222 634 2534;2535;2536;2537;2538 2074;2075;2076;2077 2077 4 0 10557000 13323000 AILQATLR IIEYLKQQVSLLKEKAILQATLREEKKLRV VSLLKEKAILQATLREEKKLRVENAKLKKE K A I L R E 2 1 0 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 884.54435 Q12904 Q12904 36 43 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 2 0.0068379 97.602 By matching By MS/MS 6 0 2 1 1 5440100 0 1249700 4190300 612 1209 635 2539;2540 2078 2078 1 0 432620 626920 AILQLDSPESAQSMYSFLK FGKVDHHVFISNRNKAILQLDSPESAQSMY LDSPESAQSMYSFLKQNPQNIGDHMLTCSL K A I L K Q 2 0 0 1 0 2 1 0 0 1 3 1 1 1 1 4 0 0 1 0 0 0 19 0 2127.0558 Q14966 Q14966 1046 1064 ZNF638 Zinc finger protein 638 yes yes 2 4.9687E-23 190.1 By MS/MS 1.5 0.5 1 1 2 11518000 0 0 11518000 613 1324 636 2541;2542 2079 2079 1 0 0 2520800 AILTYIDLVR CPWVVNIDYHPTHMKAILTYIDLVRMRLIN PTHMKAILTYIDLVRMRLINIDRIHIKNKH K A I V R M 1 1 0 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 1 1 0 0 10 0 1175.6914 Q9IWW8;P28887 Q9IWW8 1638 1647 yes no 2 0.0079118 91.626 By MS/MS 3 0 1 1 19954000 0 0 19954000 614 695 637 2543 2080 2080 1 0 0 3870100 AILVDLEPGTMDSVR SVYYNEATGGKYVPRAILVDLEPGTMDSVR AILVDLEPGTMDSVRSGPFGQIFRPDNFVF R A I V R S 1 1 0 2 0 0 1 1 0 1 2 0 1 0 1 1 1 0 0 2 0 0 15 0 1614.8287 P07437;Q13885;Q9BVA1;Q13509 P07437 63 77 TUBB;TUBB2A;TUBB2B;TUBB3 Tubulin beta chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain no no 2;3 1.9828E-17 189.13 By MS/MS By MS/MS By MS/MS 5.41 2.59 3 3 2 9 7 4 3 3 3 4 2 16 23 2797900000 42061000 801230000 1954600000 615 462;1274;1254 638;639 2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577;2578;2579;2580;2581;2582;2583;2584 2081;2082;2083;2084;2085;2086;2087;2088;2089;2090;2091;2092;2093;2094;2095;2096;2097;2098;2099;2100;2101;2102;2103;2104;2105;2106;2107;2108;2109;2110;2111;2112;2113;2114;2115;2116;2117;2118;2119;2120;2121 2093 175 41 32815000 362370000 334660000 AILYLNTGYQR YLNETQQLTAELKSKAILYLNTGYQRQLLY LKSKAILYLNTGYQRQLLYKHFDGSYSTFG K A I Q R Q 1 1 1 0 0 1 0 1 0 1 2 0 0 0 0 0 1 0 2 0 0 0 11 0 1310.6983 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1008 1018 yes yes 2 5.4244E-05 144.12 By MS/MS By MS/MS 6.33 3.3 1 1 1 2 1 18474000 16124000 2349200 0 + 616 28 640 2585;2586;2587 2122;2123;2124 2122 3 28683000 11885000 0 AIMAQLPQEQK VQTEDDQLIAGQSARAIMAQLPQEQKAKIA QSARAIMAQLPQEQKAKIAEQVASFQEEKS R A I Q K A 2 0 0 0 0 3 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 11 0 1255.6595 P35221 P35221 671 681 CTNNA1 Catenin alpha-1 yes yes 2 0.022614 82.749 By MS/MS 2 0.816 1 1 1 3 11818000 0 0 11818000 617 739 641 2588;2589;2590 2125 2125 1 0 0 2558100 AIMEMPSFYSHGLPR PDDLNSIRAAPGEFRAIMEMPSFYSHGLPR AIMEMPSFYSHGLPRCSPYKKLTECQLKNP R A I P R C 1 1 0 0 0 0 1 1 1 1 1 0 2 1 2 2 0 0 1 0 0 0 15 0 1734.8222 P55265 P55265 475 489 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2;3 0.00029623 133.07 By MS/MS By MS/MS 2.89 1.2 1 3 2 2 1 4 5 87377000 0 30001000 57376000 618 941 642 2591;2592;2593;2594;2595;2596;2597;2598;2599 2126;2127;2128;2129;2130;2131 2131 6 0 12425000 11487000 AIMTYVSSFYHAFSGAQK LDAEDIVNTARPDEKAIMTYVSSFYHAFSG TYVSSFYHAFSGAQKAETAANRICKVLAVN K A I Q K A 3 0 0 0 0 1 0 1 1 1 0 1 1 2 0 3 1 0 2 1 0 0 18 0 2006.956 O43707;P12814 O43707 256 273 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2;3 3.3995E-31 205.31 By MS/MS By MS/MS 1.89 0.567 2 6 1 6 3 132670000 0 66570000 66104000 619 210;540 643;644 2600;2601;2602;2603;2604;2605;2606;2607;2608 2132;2133;2134;2135;2136;2137;2138;2139 2139 84 8 0 29900000 14900000 AINGPTSASGDDISK EMAKDVIEEHGPSEKAINGPTSASGDDISK AINGPTSASGDDISKLQRTPGEEKINTLKE K A I S K L 2 0 1 2 0 0 0 2 0 2 0 1 0 0 1 3 1 0 0 0 0 0 15 0 1431.6842 P51114 P51114 579 593 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 2 0.00041229 114.82 By MS/MS By MS/MS 3 0 2 1 1 9954400 0 3588100 6366400 620 887 645 2609;2610 2140;2141 2140 2 0 1529600 1234800 AINIGQLVDVK EPKKEPAGHSQKKGKAINIGQLVDVKVLEK KKGKAINIGQLVDVKVLEKTKDGLEVAVLP K A I V K V 1 0 1 1 0 1 0 1 0 2 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1168.6816 Q14690 Q14690 632 642 PDCD11 Protein RRP5 homolog yes yes 2 0.00080981 116.3 By matching By matching By MS/MS 1.25 0.433 3 1 1 1 2 32335000 1171100 7990700 23173000 621 1314 646 2611;2612;2613;2614 2142;2143 2142 2 1171100 3905700 5040200 AINQGGLTSVAVR FSPEGRLYQVEYAFKAINQGGLTSVAVRGK FKAINQGGLTSVAVRGKDCAVIVTQKKVPD K A I V R G 2 1 1 0 0 1 0 2 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1284.715 P60900 P60900 31 43 PSMA6 Proteasome subunit alpha type-6 yes yes 2 0.00029253 130.41 By MS/MS By matching 7 0 2 1 1 15403000 0 5223900 10179000 622 969 647 2615;2616 2144 2144 1 0 2999600 1806300 AINQQTGAFVEISR HKCGLVIGRGGENVKAINQQTGAFVEISRQ KAINQQTGAFVEISRQLPPNGDPNFKLFII K A I S R Q 2 1 1 0 0 2 1 1 0 2 0 0 0 1 0 1 1 0 0 1 0 0 14 0 1532.7947 Q92945 Q92945 449 462 KHSRP Far upstream element-binding protein 2 yes yes 2 4.1531E-07 165.63 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 52528000 0 27298000 25230000 623 1733 648 2617;2618;2619;2620 2145;2146;2147 2146 2 0 11908000 5043600 AINTLNGLR GYGFVNYVTAKDAERAINTLNGLRLQSKTI AKDAERAINTLNGLRLQSKTIKVSYARPSS R A I L R L 1 1 2 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 970.55598 Q15717;Q12926;P26378 Q15717 77 85 ELAVL1;ELAVL2;ELAVL4 ELAV-like protein 1;ELAV-like protein 2;ELAV-like protein 4 yes no 2 2.5046E-23 187.34 By matching By MS/MS By MS/MS 5.29 0.7 1 3 3 1 4 2 184310000 4974000 129390000 49938000 624 1380 649 2621;2622;2623;2624;2625;2626;2627 2148;2149;2150;2151;2152 2152 4 3984800 44336000 7368300 AINVFVSANR KSFSDTLKTYFKDGKAINVFVSANRLIHQT FKDGKAINVFVSANRLIHQTNLILQTFKTV K A I N R L 2 1 2 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 2 0 0 10 0 1089.5931 Q9BUL8 Q9BUL8 187 196 PDCD10 Programmed cell death protein 10 yes yes 2 0.0030783 103.42 By MS/MS 7 0 1 1 2651200 0 0 2651200 625 1908 650 2628 2153 2153 1 0 0 470440 AIPDLTAPVAAVQAAVSNLVR SHLVIMHEEGEVDGKAIPDLTAPVAAVQAA APVAAVQAAVSNLVRVGKETVQTTEDQILK K A I V R V 6 1 1 1 0 1 0 0 0 1 2 0 0 0 2 1 1 0 0 4 0 0 21 0 2075.1739 P18206 P18206 36 56 VCL Vinculin yes yes 3 0.005991 57.989 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 2675600 0 315350 2360200 626 595 651 2629;2630;2631 2154;2155 2155 1 0 142010 515710 AIPLALEGK VTDLGWSRPTLIQEKAIPLALEGKDLLARA TLIQEKAIPLALEGKDLLARARTGSGKTAA K A I G K D 2 0 0 0 0 0 1 1 0 1 2 1 0 0 1 0 0 0 0 0 0 0 9 0 910.54877 Q9NY93 Q9NY93 37 45 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2 0.016963 84.227 By MS/MS 4 0 1 1 5455600 0 5455600 0 627 2095 652 2632 2156 2156 1 0 1810500 0 AIPQLQGYLR IDQKAVDSQILPKIKAIPQLQGYLRSVFAL LPKIKAIPQLQGYLRSVFALTNGIYPHKLV K A I L R S 1 1 0 0 0 2 0 1 0 1 2 0 0 0 1 0 0 0 1 0 0 0 10 0 1157.6557 Q02878 Q02878 263 272 RPL6 60S ribosomal protein L6 yes yes 2 3.8452E-20 158.08 By MS/MS By MS/MS By MS/MS 5 2.57 2 1 2 2 3 3 2 2 2 9 6 952740000 20541000 522540000 409670000 628 1149 653 2633;2634;2635;2636;2637;2638;2639;2640;2641;2642;2643;2644;2645;2646;2647;2648;2649 2157;2158;2159;2160;2161;2162;2163;2164;2165;2166;2167;2168;2169;2170;2171;2172;2173;2174;2175;2176;2177 2164 20 27350000 224500000 66350000 AIQDAILEVLK YLYRELLVHLDDPERAIQDAILEVLKEGSG DPERAIQDAILEVLKEGSGLFPDLLVRETE R A I L K E 2 0 0 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1211.7125 Q86Y56 Q86Y56 804 814 DNAAF5 Dynein assembly factor 5, axonemal yes yes 2 0.0034733 105.2 By MS/MS 3.5 0.5 1 1 2 9158500 9158500 0 0 629 1560 654 2650;2651 2178 2178 1 9171700 0 0 AIQGGTSHHLGQNFSK DYTTTIEAFISASGRAIQGGTSHHLGQNFS IQGGTSHHLGQNFSKMFEIVFEDPKIPGEK R A I S K M 1 0 1 0 0 2 0 3 2 1 1 1 0 1 0 2 1 0 0 0 0 0 16 0 1680.8332 P07814 P07814 1235 1250 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3;4 0.0022561 69.431 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 28240000 0 2078600 26161000 630 465 655 2652;2653;2654;2655 2179;2180;2181 2180 3 0 1016000 5674400 AIQWGEDGRPFHYLFYTGK RPVMKHPEQIFPRQRAIQWGEDGRPFHYLF GEDGRPFHYLFYTGKQSYYSLMHDVYGMLL R A I G K Q 1 1 0 1 0 1 1 3 1 1 1 1 0 2 1 0 1 1 2 0 0 0 19 1 2284.1065 P82933 P82933 137 155 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 3 0.036635 36.856 By MS/MS 5 0 1 1 9675600 0 0 9675600 631 1104 656 2656 2182 2182 1 0 0 1349600 AISAHFDDSSASSLK RNCFPKQTAAQVTLKAISAHFDDSSASSLK AISAHFDDSSASSLKNVYFLLFDSESIGIY K A I L K N 3 0 0 2 0 0 0 0 1 1 1 1 0 1 0 5 0 0 0 0 0 0 15 0 1534.7264 Q9P0M6 Q9P0M6 333 347 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 0.0049991 83.573 By MS/MS By MS/MS 6.6 2.42 1 2 1 1 1 4 143150000 0 41927000 101230000 632 2117 657 2657;2658;2659;2660;2661 2183;2184;2185 2184 2 0 10808000 21603000 AISEELDHALNDMTSI DDLEDELYAQKLKYKAISEELDHALNDMTS ISEELDHALNDMTSI_______________ K A I S I - 2 0 1 2 0 0 2 0 1 2 2 0 1 0 0 2 1 0 0 0 0 0 16 0 1757.8142 P06753;P09493 P09493 269 284 TPM3;TPM1 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain no no 2 0.011175 71.03 By MS/MS By matching 6 0 2 1 1 7805700 0 2411800 5393900 + 633 485;450 658 2662;2663 2186 2186 1 0 834870 806990 AISGVHTVR GTIGHVAHGKSTVVKAISGVHTVRFKNELE KSTVVKAISGVHTVRFKNELERNITIKLGY K A I V R F 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 938.52976 P41091;Q2VIR3 P41091 60 68 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.0054438 96.253 By MS/MS 4 0 1 1 1943100 0 0 1943100 634 790 659 2664 2187 2187 1 0 0 317380 AISSASSPQSPGDALR WSDFPSWAMELLVEKAISSASSPQSPGDAL ISSASSPQSPGDALRRVFECISSGIILKGS K A I L R R 3 1 0 1 0 1 0 1 0 1 1 0 0 0 2 5 0 0 0 0 0 0 16 0 1542.7638 Q96KR1 Q96KR1 954 969 ZFR Zinc finger RNA-binding protein yes yes 2 1.2364E-09 174.24 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 25708000 0 13100000 12608000 635 1806 660 2665;2666;2667;2668;2669 2188;2189;2190 2189 3 0 5717900 2663600 AISSTEAVLNNR EGALIQFATYEEAKKAISSTEAVLNNRFIK AKKAISSTEAVLNNRFIKVYWHREGSTQQL K A I N R F 2 1 2 0 0 0 1 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 12 0 1273.6626 Q5T8P6;Q9P2N5 Q5T8P6 586 597 RBM26;RBM27 RNA-binding protein 26;RNA-binding protein 27 yes no 2 0.00022294 131.44 By matching By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 3 1 15367000 3085800 8553700 3727600 636 1455 661 2670;2671;2672;2673;2674 2191;2192 2191 2 3085800 3505500 842360 AISSYFVSTMSSSIK RNGFPKQTAAQLILKAISSYFVSTMSSSIK AISSYFVSTMSSSIKTVYFVLFDSESIGIY K A I I K T 1 0 0 0 0 0 0 0 0 2 0 1 1 1 0 6 1 0 1 1 0 0 15 0 1606.7913 O75367 O75367 333 347 H2AFY Core histone macro-H2A.1 yes yes 2;3 6.1602E-05 157.68 By MS/MS By MS/MS 4.92 2.06 2 1 3 3 6 4 2 2 1 13 11 642840000 0 215790000 427060000 637 253 662;663 2675;2676;2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690;2691;2692;2693;2694;2695;2696;2697;2698 2193;2194;2195;2196;2197;2198;2199;2200;2201;2202;2203;2204;2205;2206;2207;2208;2209;2210;2211;2212;2213;2214;2215 2198 100 23 0 64503000 63771000 AITFFTEDDKPLLR IHRIGRTGRAGNKGKAITFFTEDDKPLLRS KAITFFTEDDKPLLRSVANVIQQAGCPVPE K A I L R S 1 1 0 2 0 0 1 0 0 1 2 1 0 2 1 0 2 0 0 0 0 0 14 1 1664.8774 Q9Y2R4 Q9Y2R4 512 525 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 2;3 2.7863E-10 175.15 By MS/MS 3 0 2 2 18749000 0 0 18749000 638 2246 664 2699;2700 2216;2217 2217 2 0 0 3636500 AITFLQSATR GIAYLVKVSEGDLRKAITFLQSATRLTGGK GDLRKAITFLQSATRLTGGKEITEKVITDI K A I T R L 2 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 2 0 0 0 0 0 10 0 1106.6084 P35249 P35249 241 250 RFC4 Replication factor C subunit 4 yes yes 2 4.75E-05 150.05 By MS/MS 5 0 1 1 8299300 0 0 8299300 639 744 665 2701 2218 2218 1 0 0 1157600 AITGASLADIMAK EIQKKRTRRAVKFQRAITGASLADIMAKRN QRAITGASLADIMAKRNQKPEVRKAQREQA R A I A K R 4 0 0 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1260.6748 P83731 P83731 81 93 RPL24 60S ribosomal protein L24 yes yes 2 0.00026483 141.93 By MS/MS By MS/MS By MS/MS 6.73 1.73 1 1 1 2 6 2 1 1 2 5 8 1403300000 28374000 542230000 832690000 640 1106 666;667 2702;2703;2704;2705;2706;2707;2708;2709;2710;2711;2712;2713;2714;2715;2716 2219;2220;2221;2222;2223;2224;2225;2226;2227;2228;2229;2230;2231;2232;2233;2234 2223 524 16 61151000 295870000 151870000 AITGASLADIMAKR EIQKKRTRRAVKFQRAITGASLADIMAKRN RAITGASLADIMAKRNQKPEVRKAQREQAI R A I K R N 4 1 0 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 0 14 1 1416.7759 P83731 P83731 81 94 RPL24 60S ribosomal protein L24 yes yes 3 0.012848 59.607 By matching By MS/MS 7 0 2 1 1 6471800 0 2997400 3474400 641 1106 668 2717;2718 2235 2235 1 0 1721100 616510 AITGFDDPFSGK LIDFDDRQQIYAAEKAITGFDDPFSGKTVS AEKAITGFDDPFSGKTVSVSEAIKKNLIDR K A I G K T 1 0 0 2 0 0 0 2 0 1 0 1 0 2 1 1 1 0 0 0 0 0 12 0 1253.5928 P15924 P15924 2092 2103 DSP Desmoplakin yes yes 2 0.00018735 132.88 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 62541000 0 29812000 32729000 642 572 669 2719;2720;2721;2722 2236;2237 2236 2 0 14572000 7050700 AITHLNNNFMFGQK GAAMVEMADGYAVDRAITHLNNNFMFGQKL RAITHLNNNFMFGQKLNVCVSKQPAIMPGQ R A I Q K L 1 0 3 0 0 1 0 1 1 1 1 1 1 2 0 0 1 0 0 0 0 0 14 0 1633.8035 P14866 P14866 435 448 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2;3 8.1414E-196 305.74 By MS/MS By MS/MS By MS/MS 4.24 1.75 1 2 6 8 2 3 1 2 3 14 8 1124300000 24969000 607760000 491530000 643 565 670;671 2723;2724;2725;2726;2727;2728;2729;2730;2731;2732;2733;2734;2735;2736;2737;2738;2739;2740;2741;2742;2743;2744;2745;2746;2747 2238;2239;2240;2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254 2243 248 17 22887000 217190000 87138000 AITIAGIPQSIIECVK QVQVAGDMLPNSTERAITIAGIPQSIIECV ITIAGIPQSIIECVKQICVVMLETLSQSPP R A I V K Q 2 0 0 0 1 1 1 1 0 5 0 1 0 0 1 1 1 0 0 1 0 0 16 0 1711.9542 Q15366 Q15366 145 160 PCBP2 Poly(rC)-binding protein 2 yes yes 2 3.5398E-05 124.12 By matching By MS/MS 5.67 0.471 1 2 1 2 18648000 0 1020100 17628000 644 1357 672 2748;2749;2750 2255;2256 2255 2 0 353110 2570500 AITSAYYR IKAQIWDTAGQERYRAITSAYYRGAVGALL AGQERYRAITSAYYRGAVGALLVYDIAKHL R A I Y R G 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 0 8 0 943.47633 Q15907;P62491;P57735 Q15907 75 82 RAB11B;RAB11A;RAB25 Ras-related protein Rab-11B;Ras-related protein Rab-11A;Ras-related protein Rab-25 yes no 2 0.012262 90.986 By MS/MS 10 0 1 1 3110300 0 0 3110300 645 1027 673 2751 2257 2257 1 0 0 6802600 AIVAGDQNVEYK CTTREDSPKCKGCFKAIVAGDQNVEYKGTV CFKAIVAGDQNVEYKGTVWHKDCFTCSNCK K A I Y K G 2 0 1 1 0 1 1 1 0 1 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1305.6565 Q13642 Q13642 107 118 FHL1 Four and a half LIM domains protein 1 yes yes 2 5.7499E-05 144.77 By MS/MS By MS/MS By MS/MS 5.35 2.61 2 1 1 2 2 4 2 1 2 2 5 10 810930000 8893600 128140000 673900000 646 1265 674 2752;2753;2754;2755;2756;2757;2758;2759;2760;2761;2762;2763;2764;2765;2766;2767;2768 2258;2259;2260;2261;2262;2263;2264;2265;2266;2267;2268;2269;2270;2271;2272;2273 2269 16 13649000 62390000 122220000 AIVAIENPADVSVISSR INLKRTWEKLLLAARAIVAIENPADVSVIS VAIENPADVSVISSRNTGQRAVLKFAAATG R A I S R N 3 1 1 1 0 0 1 0 0 3 0 0 0 0 1 3 0 0 0 3 0 0 17 0 1739.9418 P08865 P08865 64 80 RPSA 40S ribosomal protein SA yes yes 2;3 2.7987E-27 201.02 By MS/MS By MS/MS By MS/MS 6.4 2.33 1 1 2 3 1 2 1 5 4 112400000 6219400 40671000 65511000 647 480 675 2769;2770;2771;2772;2773;2774;2775;2776;2777;2778 2274;2275;2276;2277;2278;2279;2280;2281;2282;2283 2280 10 8281200 47562000 16685000 AIVEFLSNLAR TNVRIWKVEKGPDGKAIVEFLSNLARHTKA PDGKAIVEFLSNLARHTKAVNVVRFSPTGE K A I A R H 2 1 1 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1231.6925 Q13112 Q13112 54 64 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 2.46E-13 175.51 By matching By MS/MS By MS/MS 3.67 0.745 3 2 1 1 2 3 48634000 1630300 15227000 31776000 648 1221 676 2779;2780;2781;2782;2783;2784 2284;2285;2286;2287;2288 2286 5 1881000 5556500 5811900 AIVLAAIFR GQRLAHISTDPRLAKAIVLAAIFRCLHPLL DPRLAKAIVLAAIFRCLHPLLVVVSCLTRD K A I F R C 3 1 0 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 0 1 0 0 9 0 972.61204 Q7L2E3 Q7L2E3 886 894 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 1.4846E-11 172.39 By MS/MS 1.5 0.5 1 1 2 7029000 0 0 7029000 649 1522 677 2785;2786 2289 2289 1 0 0 1578600 AIVNVIGMHK EEYPEVLGSILGALKAIVNVIGMHKMTPPI LGALKAIVNVIGMHKMTPPIKDLLPRLTPI K A I H K M 1 0 1 0 0 0 0 1 1 2 0 1 1 0 0 0 0 0 0 2 0 0 10 0 1080.6114 O75533 O75533 999 1008 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.040769 75.213 By MS/MS 2 0 1 1 11553000 0 0 11553000 650 270 678 2787 2290 2290 1 0 0 2610800 AIVQQWLEYR QANKEYLLGSTAEEKAIVQQWLEYRVTQVD TAEEKAIVQQWLEYRVTQVDGHSSKNDIHT K A I Y R V 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 10 0 1304.6877 O43324 O43324 69 78 EEF1E1 Eukaryotic translation elongation factor 1 epsilon-1 yes yes 2 1.3802E-11 173.23 By matching By MS/MS 8 0.707 1 2 1 1 3 20403000 0 1338000 19065000 651 194 679 2788;2789;2790;2791 2291;2292 2292 2 0 608760 3248400 AIVSSGTLGDR SKTNSQKGASSTWMKAIVSSGTLGDRMAAM TWMKAIVSSGTLGDRMAAMILLIQDDAVHT K A I D R M 1 1 0 1 0 0 0 2 0 1 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1074.5669 Q03701 Q03701 237 247 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.02545 81.972 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 22900000 0 6827400 16072000 652 1157 680 2792;2793;2794;2795 2293;2294 2293 1 0 3074500 3471500 AIYAYALQVFPSK DADSCVAHNALECARAIYAYALQVFPSKKS ARAIYAYALQVFPSKKSVWLRAAYFEKNHG R A I S K K 3 0 0 0 0 1 0 0 0 1 1 1 0 1 1 1 0 0 2 1 0 0 13 0 1469.7919 O94906 O94906 561 573 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00031728 129.16 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 12625000 0 2412600 10213000 653 305 681 2796;2797 2295;2296 2295 2 0 1028500 2307900 AIYAYALQVFPSKK DADSCVAHNALECARAIYAYALQVFPSKKS RAIYAYALQVFPSKKSVWLRAAYFEKNHGT R A I K K S 3 0 0 0 0 1 0 0 0 1 1 2 0 1 1 1 0 0 2 1 0 0 14 1 1597.8868 O94906 O94906 561 574 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.023746 52.5 By MS/MS 2.5 0.5 1 1 2 3511900 0 3511900 0 654 305 682 2798;2799 2297 2297 1 0 1540500 0 AIYELAISQPR FAELETILGDIDRARAIYELAISQPRLDMP DRARAIYELAISQPRLDMPEVLWKSYIDFE R A I P R L 2 1 0 0 0 1 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1259.6874 Q9BZJ0 Q9BZJ0 661 671 CRNKL1 Crooked neck-like protein 1 yes yes 2 8.2243E-05 105.4 By MS/MS 9 0 1 1 0 0 0 0 655 1944 683 2800 2298 2298 1 0 0 0 AIYHDLEQSIR EVQKHLDLSNVAGYKAIYHDLEQSIRAADA AGYKAIYHDLEQSIRAADAVEDLRWFRANH K A I I R A 1 1 0 1 0 1 1 0 1 2 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1343.6834 Q9UNF0 Q9UNF0 265 275 PACSIN2 Protein kinase C and casein kinase substrate in neurons protein 2 yes yes 3 0.00082744 102.53 By MS/MS 3 0 1 1 5044700 0 0 5044700 656 2205 684 2801 2299 2299 1 0 0 978430 AKDELSAQAEVK AWMGEQELHMMGQEKAKDELSAQAEVKKHQ QEKAKDELSAQAEVKKHQVLEQALADYAQT K A K V K K 3 0 0 1 0 1 2 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 12 1 1287.667 O15020 O15020 1617 1628 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2;3 0.034819 104.3 By MS/MS By MS/MS 1 0 2 1 1 5894700 0 3327400 2567300 657 160 685 2802;2803 2300;2301 2301 2 0 1626400 553160 AKDEQSAVSMLK AWMSEQELYMMSEEKAKDEQSAVSMLKKHQ EEKAKDEQSAVSMLKKHQILEQAVEDYAET K A K L K K 2 0 0 1 0 1 1 0 0 0 1 2 1 0 0 2 0 0 0 1 0 0 12 1 1305.6599 Q01082 Q01082 1621 1632 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 0.00010264 156.01 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 59430000 0 10325000 49104000 658 1128 686 2804;2805;2806;2807;2808 2302;2303;2304 2302 3 0 5046900 10614000 AKDLQDELAGNSEQR ERQEQIKQRTKLELKAKDLQDELAGNSEQR AKDLQDELAGNSEQRKRLLKERQKLLEKIE K A K Q R K 2 1 1 2 0 2 2 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 15 1 1672.8016 Q9UQE7 Q9UQE7 309 323 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.2627E-126 276.47 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 56171000 0 10996000 45175000 659 2222 687 2809;2810;2811;2812;2813 2305;2306;2307;2308;2309 2309 5 0 4951600 9932000 AKDNFNFLHLNR PSVYENGLSQKSSHKAKDNFNFLHLNRNAC SHKAKDNFNFLHLNRNACYQPMSFRPRILI K A K N R N 1 1 3 1 0 0 0 0 1 0 2 1 0 2 0 0 0 0 0 0 0 0 12 1 1487.7633 Q6PL18 Q6PL18 771 782 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 3 0.021115 64.55 By MS/MS 1 0 1 1 7503900 0 0 7503900 660 1498 688 2814 2310 2310 1 0 0 1616800 AKEAAEQDVEK MARANARLFGIRAKRAKEAAEQDVEKKK__ RAKRAKEAAEQDVEKKK_____________ R A K E K K 3 0 0 1 0 1 3 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 11 1 1216.5935 P26373 P26373 199 209 RPL13 60S ribosomal protein L13 yes yes 2;3 0.016273 108.7 By MS/MS By matching 6.2 0.4 4 1 2 3 3630600 0 3416200 214350 661 669 689 2815;2816;2817;2818;2819 2311;2312;2313;2314 2314 4 0 1182600 33274 AKEEEGVPDEEGWVK FMEAYDQKIAEEEAKAKEEEGVPDEEGWVK AKEEEGVPDEEGWVKVTRRGRRPVLPRTEA K A K V K V 1 0 0 1 0 0 5 2 0 0 0 2 0 0 1 0 0 1 0 2 0 0 15 1 1700.7893 Q9Y3A4;Q9NSQ0 Q9Y3A4 191 205 RRP7A;RRP7BP Ribosomal RNA-processing protein 7 homolog A;Putative ribosomal RNA-processing protein 7 homolog B yes no 2;3 0.0032474 145.31 By matching By MS/MS 6.25 0.433 3 1 1 3 23311000 0 1193500 22118000 662 2262 690 2820;2821;2822;2823 2315;2316 2316 2 0 413150 3446200 AKEFTNVYIK RFKSRKEREAELGARAKEFTNVYIKNFGED ELGARAKEFTNVYIKNFGEDMDDERLKDLF R A K I K N 1 0 1 0 0 0 1 0 0 1 0 2 0 1 0 0 1 0 1 1 0 0 10 1 1211.655 P11940;Q13310 P11940 187 196 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2;3 0.0023905 119.62 By MS/MS By MS/MS 4.29 1.67 1 2 1 1 1 1 6 1 149090000 0 118390000 30692000 663 530;1237 691 2824;2825;2826;2827;2828;2829;2830 2317;2318;2319 2317 3 0 49117000 5952800 AKEGVVAAAEK ______________________________ GLSKAKEGVVAAAEKTKQGVAEAAGKTKEG K A K E K T 4 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 2 0 0 11 1 1071.5924 P37840 P37840 11 21 SNCA Alpha-synuclein yes yes 2 4.5149E-15 150.09 By MS/MS By MS/MS 7.4 2.37 1 1 1 3 2 2 3 7 58023000 0 15606000 42417000 664 769 692 2831;2832;2833;2834;2835;2836;2837;2838;2839;2840 2320;2321;2322;2323;2324;2325;2326;2327;2328;2329 2323 10 0 4100100 33909000 AKFEELNMDLFR ESFYEGEDFSETLTRAKFEELNMDLFRSTM LTRAKFEELNMDLFRSTMKPVQKVLEDSDL R A K F R S 1 1 1 1 0 0 2 0 0 0 2 1 1 2 0 0 0 0 0 0 0 0 12 1 1511.7442 P11021 P11021 325 336 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.0022851 99.568 By MS/MS 2.67 0.471 1 2 3 13371000 0 0 13371000 665 516 693 2841;2842;2843 2330;2331 2330 2 0 0 2650400 AKGEIPEVAFMK NWDYTRSAQAFTHLKAKGEIPEVAFMK___ HLKAKGEIPEVAFMK_______________ K A K M K - 2 0 0 0 0 0 2 1 0 1 0 2 1 1 1 0 0 0 0 1 0 0 12 1 1318.6955 Q9UBU9 Q9UBU9 608 619 NXF1 Nuclear RNA export factor 1 yes yes 3 0.0085122 76.522 By MS/MS By MS/MS 3 0 2 1 1 9061100 0 1968200 7092900 666 2136 694 2844;2845 2332;2333 2332 2 0 839050 1375700 AKLDVQFAGTAK GKPTHFTVLTKGAGKAKLDVQFAGTAKGEV AGKAKLDVQFAGTAKGEVVRDFEIIDNHDY K A K A K G 3 0 0 1 0 1 0 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 12 1 1247.6874 Q14315 Q14315 900 911 FLNC Filamin-C yes yes 2 0.015105 98.634 By MS/MS 1 0 1 1 15392000 0 15392000 0 667 1298 695 2846 2334 2334 0 0 7523400 0 AKLEQLFQDEVAK KDSLLQRERFIEQEKAKLEQLFQDEVAKAQ EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K A K A K A 2 0 0 1 0 2 2 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 1 1517.809 Q15149 Q15149 2651 2663 PLEC Plectin yes yes 2;3 1.3465E-56 228.93 By MS/MS By MS/MS 1 0 3 2 1 36619000 0 21193000 15426000 668 1348 696 2847;2848;2849 2335;2336;2337 2336 3 0 10359000 3323700 AKLQELEGAVK DNARQQLERQNKELKAKLQELEGAVKSKFK KELKAKLQELEGAVKSKFKATISALEAKIG K A K V K S 2 0 0 0 0 1 2 1 0 0 2 2 0 0 0 0 0 0 0 1 0 0 11 1 1184.6765 P35580 P35580 1799 1809 MYH10 Myosin-10 yes yes 2 0.0037219 103.01 By MS/MS 1 0 1 1 0 0 0 0 669 753 697 2850 2338 2338 1 0 0 0 AKLQIELGK LADARRALDDTARERAKLQIELGKCKAEHD DTARERAKLQIELGKCKAEHDQLLLNYAKK R A K G K C 1 0 0 0 0 1 1 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 9 1 998.61243 P20700 P20700 101 109 LMNB1 Lamin-B1 yes yes 2 0.026762 99.802 By MS/MS 3 0 1 1 11422000 0 11422000 0 670 619 698 2851 2339 2339 1 0 4869400 0 AKPALEDLR YHAKATEHLSTLSEKAKPALEDLRQGLLPV STLSEKAKPALEDLRQGLLPVLESFKVSFL K A K L R Q 2 1 0 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 9 1 1011.5713 P02647 P02647 231 239 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.0063019 111.74 By MS/MS 9.5 0.5 1 1 2 97969000 97969000 0 0 671 389 699 2852;2853 2340 2340 1 59295000 0 0 AKPVLEDLR YHAKASEQLKALGEKAKPVLEDLRQGLLPV KALGEKAKPVLEDLRQGLLPVLESLKVSIL K A K L R Q 1 1 0 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1039.6026 CON__P15497 CON__P15497 229 237 yes yes 2 2.5801E-06 157.34 By matching By MS/MS 7.6 1.36 1 2 1 1 2 3 439980000 83789000 0 356190000 + 672 59 700 2854;2855;2856;2857;2858 2341;2342 2341 2 179220000 0 131160000 AKQDVIEVIEK ADSKTYQDIQNTIKKAKQDVIEVIEKAHNN TIKKAKQDVIEVIEKAHNNELEPTPGNTLR K A K E K A 1 0 0 1 0 1 2 0 0 2 0 2 0 0 0 0 0 0 0 2 0 0 11 1 1270.7133 P24928 P24928 709 719 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.0025331 125.23 By MS/MS 1 0 1 1 5319300 0 0 5319300 673 653 701 2859 2343 2343 1 0 0 1146100 AKQTLENERGELANEVK EQLEQTKRVKANLEKAKQTLENERGELANE QTLENERGELANEVKVLLQGKGDSEHKRKK K A K V K V 2 1 2 0 0 1 4 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 17 2 1927.9963 P35579 P35579 1218 1234 MYH9 Myosin-9 yes yes 3;4 7.8459E-06 107.75 By MS/MS 1.5 0.5 2 2 4 70613000 0 70613000 0 674 752 702 2860;2861;2862;2863 2344;2345;2346 2345 3 0 34067000 0 AKVEFNIR EMTLDEWKAIQNKDRAKVEFNIRKPNEGAD AIQNKDRAKVEFNIRKPNEGADGQWKKGFV R A K I R K 1 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 1 975.55016 Q8NC51 Q8NC51 302 309 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0036452 129.47 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 99841000 0 56202000 43639000 675 1630 703 2864;2865;2866;2867 2347;2348 2347 2 0 18809000 6700500 ALAAAGYDVEK ASKERSGVSLAALKKALAAAGYDVEKNNSR ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K A L E K N 4 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1106.5608 P10412;Q02539;P22492;P16402;P16403 P16403 65 75 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.3;Histone H1.2 no no 2 0.0010715 113.62 By MS/MS By MS/MS By MS/MS 5.63 2.58 2 2 4 2 3 6 3 3 3 2 3 13 14 15926000000 33853000 2469800000 13423000000 676 509;578;577 704 2868;2869;2870;2871;2872;2873;2874;2875;2876;2877;2878;2879;2880;2881;2882;2883;2884;2885;2886;2887;2888;2889;2890;2891;2892;2893;2894;2895;2896;2897 2349;2350;2351;2352;2353;2354;2355;2356;2357;2358;2359;2360;2361;2362;2363;2364;2365;2366;2367;2368;2369;2370;2371;2372;2373;2374;2375;2376;2377;2378;2379;2380;2381;2382;2383;2384;2385;2386;2387;2388;2389 2357 41 27279000 1247700000 2386100000 ALAAAGYDVEKNNSR ASKERSGVSLAALKKALAAAGYDVEKNNSR ALAAAGYDVEKNNSRIKLGLKSLVSKGTLV K A L S R I 4 1 2 1 0 0 1 1 0 0 1 1 0 0 0 1 0 0 1 1 0 0 15 1 1577.7798 P10412;Q02539;P22492;P16402;P16403 P16403 65 79 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.3;Histone H1.2 no no 2;3 9.9533E-89 255.52 By MS/MS 4.83 2.7 2 2 1 4 2 1 12 915630000 0 915630000 0 677 509;578;577 705 2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909 2390;2391;2392;2393;2394;2395;2396;2397;2398;2399;2400;2401 2395 12 0 343920000 0 ALAAEMTDYFSR IKKNEFKIVYVAPMKALAAEMTDYFSRRLE PMKALAAEMTDYFSRRLEPLGIIVKELTGD K A L S R R 3 1 0 1 0 0 1 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 12 0 1373.6286 Q8N3C0 Q8N3C0 541 552 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00077462 120.68 By MS/MS By MS/MS 1 0 2 1 1 9714300 0 5064300 4650000 678 1602 706 2910;2911 2402;2403 2403 2 0 2475300 1001900 ALAEVDVISLEQGKK LLEKVPAELICLDPRALAEVDVISLEQGKK ALAEVDVISLEQGKKEQIERLGYDPQAKAP R A L K K E 2 0 0 1 0 1 2 1 0 1 2 2 0 0 0 1 0 0 0 2 0 0 15 1 1598.8879 O15213 O15213 520 534 WDR46 WD repeat-containing protein 46 yes yes 2;3 0.0036216 90.614 By matching By MS/MS By MS/MS 2.4 0.8 1 1 3 1 1 3 21142000 1337900 3392400 16411000 679 173 707 2912;2913;2914;2915;2916 2404;2405;2406 2405 3 1337900 1446200 3291700 ALAFNGVMFGDRPLK RFAFVEFADQNSVPRALAFNGVMFGDRPLK ALAFNGVMFGDRPLKINHSNNAIVKPPEMT R A L L K I 2 1 1 1 0 0 0 2 0 0 2 1 1 2 1 0 0 0 0 1 0 0 15 1 1634.8603 Q8WXA9 Q8WXA9 122 136 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes yes 3 0.04676 43.798 By MS/MS 2.5 0.5 1 1 2 5693400 0 0 5693400 680 1693 708 2917;2918 2407 2407 1 0 0 1155900 ALAILSQPTPSLVVDHER RRSQVEQQQLITVEKALAILSQPTPSLVVD ILSQPTPSLVVDHERLKNLLKTVVKKSQNY K A L E R L 2 1 0 1 0 1 1 0 1 1 3 0 0 0 2 2 1 0 0 2 0 0 18 0 1945.0633 Q6PL18 Q6PL18 1315 1332 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 3 0.00028352 79.805 By matching By MS/MS 1.5 0.5 1 1 1 1 15825000 0 1623800 14201000 681 1498 709 2919;2920 2408 2408 1 0 793670 3209200 ALANESGLNFLAIK LLYGPPGCSKTMIAKALANESGLNFLAIKG KALANESGLNFLAIKGPELMNKYVGESERA K A L I K G 3 0 2 0 0 0 1 1 0 1 3 1 0 1 0 1 0 0 0 0 0 0 14 0 1459.8035 Q8NB90 Q8NB90 680 693 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.00056701 118.4 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 18201000 0 6386500 11815000 682 1624 710 2921;2922;2923 2409;2410 2410 2 0 2853600 2669900 ALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEK AGVNVEPFWPGLFAKALANVNIGSLICNVG GGPAPSTAAAPAEEKKVEAKKEESEESDDD K A L E K K 14 0 3 0 1 0 2 7 0 2 2 1 0 0 6 2 1 0 0 2 0 0 43 0 3807.9214 P05386 P05386 50 92 RPLP1 60S acidic ribosomal protein P1 yes yes 3 1.0293E-10 48.798 By MS/MS 9 0 1 1 23047000 0 0 23047000 683 430 711 2924 2411 2411 1 0 0 7362200 ALAPTWEQLALGLEHSETVK DHFIKFFAPWCGHCKALAPTWEQLALGLEH WEQLALGLEHSETVKIGKVDCTQHYELCSG K A L V K I 3 0 0 0 0 1 3 1 1 0 4 1 0 0 1 1 2 1 0 1 0 0 20 0 2192.1477 Q8NBS9 Q8NBS9 222 241 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 3 0.0016704 58.49 By MS/MS 5 0 1 1 6583900 0 6583900 0 684 1628 712 2925 2412 2412 1 0 1697100 0 ALAQEDQGAGEVER AVREKEVEAIQAQAKALAQEDQGAGEVERT KALAQEDQGAGEVERTSRAVEEKFRALCQP K A L E R T 3 1 0 1 0 2 3 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 14 0 1471.6903 O15020 O15020 1448 1461 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.00026802 150.46 By MS/MS By MS/MS 1 0 2 1 1 10066000 0 5012300 5054000 685 160 713 2926;2927 2413;2414 2413 2 0 2449900 1089000 ALATHPGISFYEEPR FPLPLEPCTQEFLWRALATHPGISFYEEPR ALATHPGISFYEEPRERPDLQLQDRYEEID R A L P R E 2 1 0 0 0 0 2 1 1 1 1 0 0 1 2 1 1 0 1 0 0 0 15 0 1686.8366 Q12789 Q12789 50 64 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 3 0.0010812 81.703 By MS/MS By MS/MS 1 0 2 1 1 10251000 0 3270900 6980200 686 1198 714 2928;2929 2415;2416 2416 2 0 1598800 1504000 ALAVGGLGSIIR PTENSSAVLLQWHEKALAVGGLGSIIRVLT HEKALAVGGLGSIIRVLTARKTV_______ K A L I R V 2 1 0 0 0 0 0 3 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1125.687 Q9BPX5 Q9BPX5 134 145 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein yes yes 2 0.00034983 128.86 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 30927000 0 18993000 11933000 687 1874 715 2930;2931;2932 2417;2418 2418 2 0 8977700 1829500 ALAVMVDHLESEK LQDEMFHSDFQHHNKALAVMVDHLESEKEG NKALAVMVDHLESEKEGVIGCLDLILKWLT K A L E K E 2 0 0 1 0 0 2 0 1 0 2 1 1 0 0 1 0 0 0 2 0 0 13 0 1440.7283 Q14008 Q14008 1223 1235 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 2.1378E-12 184.71 By MS/MS 1.33 0.471 2 1 3 101880000 0 0 101880000 688 1279 716 2933;2934;2935 2419;2420 2420 2 0 0 22070000 ALAVVYGPHEIR AQADGSAYIEQGNTKALAVVYGPHEIRGSR NTKALAVVYGPHEIRGSRARALPDRALVNC K A L I R G 2 1 0 0 0 0 1 1 1 1 1 0 0 0 1 0 0 0 1 2 0 0 12 0 1323.7299 Q9NPD3 Q9NPD3 48 59 EXOSC4 Exosome complex component RRP41 yes yes 2;3 0.00047487 126.31 By MS/MS By MS/MS 7.2 0.4 4 1 2 3 56960000 0 11302000 45658000 689 2025 717 2936;2937;2938;2939;2940 2421;2422;2423;2424 2421 4 0 6489700 7986100 ALDELMDGDIIVFQK NLTERIQDYDVSLDKALDELMDGDIIVFQK ALDELMDGDIIVFQKDDPENDNSELPTAKE K A L Q K D 1 0 0 3 0 1 1 1 0 2 2 1 1 1 0 0 0 0 0 1 0 0 15 0 1705.8597 Q93009 Q93009 756 770 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.0020646 90.653 By MS/MS 2 0 1 1 5162500 0 0 5162500 690 1738 718 2941 2425 2425 1 0 0 1166600 ALDEMEK AQPGTFEFEYASRWKALDEMEKQQREQVDR FEYASRWKALDEMEKQQREQVDRNIREAKE K A L E K Q 1 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 7 0 834.37932 Q8WXF1 Q8WXF1 281 287 PSPC1 Paraspeckle component 1 yes yes 2 0.024191 97.602 By MS/MS 3 0 1 1 20868000 0 0 20868000 691 1695 719 2942 2426 2426 1 0 0 4047400 ALDFIASK ERGKMRVHKINNVNKALDFIASKGVKLVSI KINNVNKALDFIASKGVKLVSIGAEEIVDG K A L S K G 2 0 0 1 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 0 863.47527 O43707;Q08043;P12814 O43707 115 122 ACTN4;ACTN3;ACTN1 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1 no no 2 0.0096971 94.114 By MS/MS 2 0 1 1 32694000 0 32694000 0 692 210;540 720 2943 2427 2427 1 0 14722000 0 ALDGINSGITHAGR GINRGLSNAEREVGKALDGINSGITHAGRE KALDGINSGITHAGREVEKVFNGLSNMGSH K A L G R E 2 1 1 1 0 0 0 3 1 2 1 0 0 0 0 1 1 0 0 0 0 0 14 0 1380.711 Q6UWP8 Q6UWP8 50 63 SBSN Suprabasin yes yes 2;3 7.8491E-05 157.78 By MS/MS By matching By MS/MS 7.23 3.07 2 1 1 1 2 2 4 10 1 2 527420000 385440000 124480000 17497000 693 1504 721 2944;2945;2946;2947;2948;2949;2950;2951;2952;2953;2954;2955;2956 2428;2429;2430;2431;2432;2433;2434 2433 6 304530000 99676000 38269000 ALDIDLDKPLADSEK LPSDEDDKDPNDPYRALDIDLDKPLADSEK ALDIDLDKPLADSEKLPIQKHRNTETSKSP R A L E K L 2 0 0 4 0 0 1 0 0 1 3 2 0 0 1 1 0 0 0 0 0 0 15 1 1641.8461 O14617 O14617 801 815 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.00078252 153.63 By MS/MS 2 0 1 1 7729500 0 0 7729500 694 139 722 2957 2435 2435 1 0 0 1746700 ALDIPLVK WAPRPFNLRSGRTRRALDIPLVKNWYREHC RSGRTRRALDIPLVKNWYREHCPAGQPVKV R A L V K N 1 0 0 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 8 0 867.54295 Q6P2Q9 Q6P2Q9 421 428 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0095763 94.262 By matching By MS/MS 1 0 2 1 1 19966000 1295500 0 18670000 695 1490 723 2958;2959 2436 2436 1 1295500 0 4022800 ALDKLDGTEINGR NEGVIEFRSYSDMKRALDKLDGTEINGRNI KRALDKLDGTEINGRNIRLIEDKPRTSHRR R A L G R N 1 1 1 2 0 0 1 2 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 1 1400.726 Q13247 Q13247 162 174 SRSF6 Serine/arginine-rich splicing factor 6 yes yes 2;3 1.622E-10 179.57 By MS/MS By MS/MS 4.4 0.49 3 2 3 2 41421000 0 20834000 20588000 696 1234 724 2960;2961;2962;2963;2964 2437;2438;2439;2440 2438 4 0 6196100 2871600 ALDLADMITR IPNRIMFSEMKRVTKALDLADMITRVIQEG KRVTKALDLADMITRVIQEGLEGLVLKDVK K A L T R V 2 1 0 2 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1117.5801 P49916 P49916 639 648 LIG3 DNA ligase 3 yes yes 2 7.5161E-05 148.14 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 30146000 0 6434900 23711000 697 874 725 2965;2966;2967;2968 2441;2442;2443;2444 2443 4 0 2897700 5136400 ALDLLNNK IRGLVGNPLPSVRRKALDLLNNKLQQNISW LPSVRRKALDLLNNKLQQNISWKKTIVTRF K A L N K L 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 899.50763 Q9H583 Q9H583 1619 1626 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.0044238 101.69 By matching By MS/MS By MS/MS 1 0 3 1 1 1 54049000 34417000 7850100 11782000 698 1984 726 2969;2970;2971 2445;2446 2445 2 34417000 3837000 2538700 ALDLLYGMVSK ILQCLDDKDESIRLRALDLLYGMVSKKNLM IRLRALDLLYGMVSKKNLMEIVKKLMTHVD R A L S K K 1 0 0 1 0 0 0 1 0 0 3 1 1 0 0 1 0 0 1 1 0 0 11 0 1208.6475 O14617 O14617 360 370 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.010563 90.108 By MS/MS 2 0 1 1 13963000 0 0 13963000 699 139 727 2972 2447 2447 1 0 0 3155300 ALDPADQHLR ______________________________ ______________________________ M A L L R H 2 1 0 2 0 1 0 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 10 0 1134.5782 Q7Z7K0 Q7Z7K0 2 11 CMC1 COX assembly mitochondrial protein homolog yes yes 2 0.0040473 90.657 By MS/MS 9 0 1 1 2447800 0 2447800 0 700 1537 728 2973 2448 2448 1 0 1960100 0 ALDPPQLQVISNAMNLLR IMKCNLGSPEDFLSKALDPPQLQVISNAMN PPQLQVISNAMNLLRKIGACELNEPKLTPL K A L L R K 2 1 2 1 0 2 0 0 0 1 4 0 1 0 2 1 0 0 0 1 0 0 18 0 1992.0826 Q7Z478 Q7Z478 1037 1054 DHX29 ATP-dependent RNA helicase DHX29 yes yes 3 3.9938E-05 98.062 By MS/MS 2 0 1 1 697530 0 697530 0 701 1532 729 2974 2449 2449 1 0 314110 0 ALDQFVNFSEQK QCNTELKKYSHVNKKALDQFVNFSEQKEKL NKKALDQFVNFSEQKEKLIKRQEELDRGYK K A L Q K E 1 0 1 1 0 2 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 12 0 1424.6936 Q9UQE7 Q9UQE7 986 997 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.8659E-25 199.11 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 112420000 0 17987000 94430000 702 2222 730 2975;2976;2977;2978;2979 2450;2451;2452 2451 3 0 8202000 20922000 ALDQFVNFSEQKEK QCNTELKKYSHVNKKALDQFVNFSEQKEKL KALDQFVNFSEQKEKLIKRQEELDRGYKSI K A L E K L 1 0 1 1 0 2 2 0 0 0 1 2 0 2 0 1 0 0 0 1 0 0 14 1 1681.8312 Q9UQE7 Q9UQE7 986 999 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0042095 118.9 By MS/MS 2 0 1 1 3006200 0 3006200 0 703 2222 731 2980 2453 2453 1 0 1353700 0 ALDQSDNDMSAVYR TPMAAAANEVYKRAKALDQSDNDMSAVYRA KALDQSDNDMSAVYRAYIH___________ K A L Y R A 2 1 1 3 0 1 0 0 0 0 1 0 1 0 0 2 0 0 1 1 0 0 14 0 1583.6886 Q49A26 Q49A26 536 549 GLYR1 Putative oxidoreductase GLYR1 yes yes 2 4.1932E-08 173.71 By MS/MS 4.5 1.12 1 1 1 1 4 34195000 0 0 34195000 704 1417 732 2981;2982;2983;2984 2454;2455 2454 2 0 0 5811500 ALDSVISMTEGMEAFLR FADHVSSSLKLNAFKALDSVISMTEGMEAF DSVISMTEGMEAFLRGRQNEKSGYQKLLEL K A L L R G 2 1 0 1 0 0 2 1 0 1 2 0 2 1 0 2 1 0 0 1 0 0 17 0 1868.9012 Q69YN4 Q69YN4 506 522 KIAA1429 Protein virilizer homolog yes yes 2 1.8684E-06 155.02 By MS/MS 1 0 1 1 1291700 0 0 1291700 705 1468 733 2985 2456 2456 1 0 0 278310 ALDTMNFDVIK GYAYVNFQQPADAERALDTMNFDVIKGKPV DAERALDTMNFDVIKGKPVRIMWSQRDPSL R A L I K G 1 0 1 2 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1265.6326 P11940;Q13310 P11940 68 78 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 7.9248E-10 138.98 By MS/MS By MS/MS 4.93 2.6 1 1 3 2 2 2 1 2 10 4 408880000 0 294230000 114650000 706 530;1237 734;735 2986;2987;2988;2989;2990;2991;2992;2993;2994;2995;2996;2997;2998;2999 2457;2458;2459;2460;2461;2462;2463;2464;2465 2461 230 8 0 148660000 25582000 ALDVADLQK NQKQGRFRSLEEALKALDVADLQKELDKSQ LEEALKALDVADLQKELDKSQSVFSGNPSI K A L Q K E 2 0 0 2 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 0 971.52876 Q6NUQ4 Q6NUQ4 117 125 TMEM214 Transmembrane protein 214 yes yes 2 0.050022 71.501 By MS/MS 3 0 1 1 3529800 0 3529800 0 707 1481 736 3000 2466 2466 1 0 1504800 0 ALDYYMLR SDDDPKKGIWLEAGKALDYYMLRNGDTMEY IWLEAGKALDYYMLRNGDTMEYRKKQRPLK K A L L R N 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 2 0 0 0 8 0 1043.511 Q9Y490 Q9Y490 67 74 TLN1 Talin-1 yes yes 2 0.044122 74.415 By matching By MS/MS 4.5 0.5 1 1 1 1 4536900 0 1532300 3004600 708 2284 737 3001;3002 2467 2467 1 0 508510 419090 ALEAANADLEVK QNLNDRLASYLDKVRALEAANADLEVKIRD KVRALEAANADLEVKIRDWHLKQSPASPER R A L V K I 4 0 1 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1242.6456 CON__P08730-1 CON__P08730-1 116 127 yes yes 2 0.00037873 128.27 By MS/MS By MS/MS By matching 5.8 0.748 2 2 1 1 2 2 26946000 5173600 14313000 7458600 + 709 52 738 3003;3004;3005;3006;3007 2468;2469 2469 2 4144700 3874900 1200500 ALEAANGELEVK QNLNDRLASYLDKVRALEAANGELEVKIRD KVRALEAANGELEVKIRDWYQKQGPGPSRD R A L V K I 3 0 1 0 0 0 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1242.6456 CON__P08727;P08727 CON__P08727 100 111 KRT19 Keratin, type I cytoskeletal 19 yes no 2 0.00012454 137.98 By MS/MS 5 0 1 1 98568000 0 0 98568000 + 710 51 739 3008 2470 2470 1 0 0 13748000 ALEAVFGK GKLFIGGLNTETNEKALEAVFGKYGRIVEV NTETNEKALEAVFGKYGRIVEVLLMKDRET K A L G K Y 2 0 0 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 833.4647 P38159 P38159 23 30 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes yes 2 0.01344 89.55 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 3 5 210070000 0 55571000 154500000 711 771 740 3009;3010;3011;3012;3013;3014;3015;3016 2471;2472;2473;2474;2475;2476;2477 2476 7 0 15819000 23293000 ALEDAQAVNEQLSSER GENLRLQGLVRQKERALEDAQAVNEQLSSE LEDAQAVNEQLSSERSNLAQVIRQEFEDRL R A L E R S 3 1 1 1 0 2 3 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 16 0 1758.8384 Q9UPN4 Q9UPN4 978 993 CEP131 Centrosomal protein of 131 kDa yes yes 2 1.1199E-60 238.13 By MS/MS By MS/MS 2 0 2 1 1 15363000 0 2871000 12492000 712 2215 741 3017;3018 2478;2479 2479 2 0 1292900 2823000 ALEDFLASLR EGMNHRVQRSEDTLKALEDFLASLRTAKLS EDTLKALEDFLASLRTAKLSAEPVTDLSAS K A L L R T 2 1 0 1 0 0 1 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 10 0 1133.6081 Q8WXH0 Q8WXH0 1324 1333 SYNE2 Nesprin-2 yes yes 2 0.00039764 118.5 By MS/MS By MS/MS 1 0 2 1 1 1981700 0 0 1981700 713 1696 742 3019;3020 2480;2481 2481 2 0 0 426990 ALEDLAGFK PGSKRQLQTPKEKAQALEDLAGFKELFQTP PKEKAQALEDLAGFKELFQTPGHTEELVAA Q A L F K E 2 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 962.5073 P46013 P46013 1220 1228 MKI67 Antigen KI-67 yes yes 2 0.0054438 96.253 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 32986000 0 16802000 16185000 714 821 743 3021;3022;3023;3024;3025;3026 2482;2483;2484 2483 3 0 7608500 3367500 ALEDLVDFK TGSRRQLRTRKEKARALEDLVDFKELFSAP RKEKARALEDLVDFKELFSAPGHTEESMTI R A L F K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1048.5441 P46013 P46013 2555 2563 MKI67 Antigen KI-67 yes yes 2 0.030726 77.072 By matching By MS/MS 1.5 0.5 1 1 1 1 5780500 0 432670 5347800 715 821 744 3027;3028 2485 2485 1 0 211480 1208500 ALEEALEAK AEAREKETKALSLARALEEALEAKEEFERQ ALSLARALEEALEAKEEFERQNKQLRADME R A L A K E 3 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 972.51278 P35580 P35580 1491 1499 MYH10 Myosin-10 no no 2 0.002059 105.57 By MS/MS 1 0 1 1 7799300 0 7799300 0 716 753 745 3029 2486 2486 1 0 3812200 0 ALEEALEAKEEFER AEAREKETKALSLARALEEALEAKEEFERQ RALEEALEAKEEFERQNKQLRADMEDLMSS R A L E R Q 3 1 0 0 0 0 6 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 14 1 1662.8101 P35580 P35580 1491 1504 MYH10 Myosin-10 yes yes 3 0.0075461 68.044 By MS/MS 1 0 1 1 157180000 0 0 157180000 717 753 746 3030 2487 2487 1 0 0 33866000 ALEEAMEQK AEAREKETKALSLARALEEAMEQKAELERL ALSLARALEEAMEQKAELERLNKQFRTEME R A L Q K A 2 0 0 0 0 1 3 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1047.4907 P35579 P35579 1484 1492 MYH9 Myosin-9 yes yes 2 0.00065852 133.55 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 132940000 0 105420000 27521000 718 752 747 3031;3032;3033;3034 2488;2489;2490 2488 3 0 50856000 5929900 ALEEAMEQKAELER AEAREKETKALSLARALEEAMEQKAELERL RALEEAMEQKAELERLNKQFRTEMEDLMSS R A L E R L 3 1 0 0 0 1 5 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 14 1 1645.7981 P35579 P35579 1484 1497 MYH9 Myosin-9 yes yes 2;3 2.1292E-33 212.89 By MS/MS 1.25 0.433 3 1 4 29370000 0 29370000 0 719 752 748;749 3035;3036;3037;3038 2491;2492;2493 2492 344 3 0 14250000 0 ALEEANADLEVK QNLNDRLASYLDKVRALEEANADLEVKIRD KVRALEEANADLEVKIRDWYQRQRPAEIKD R A L V K I 3 0 1 1 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1300.6511 CON__P02533;P02533;CON__P08779;P08779;CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;CON__Q6IFX2 CON__P02533 135 146 KRT14;KRT16;KRT13 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13 no no 2 7.1088E-18 190.24 By MS/MS By MS/MS By MS/MS 5.55 3.14 2 3 2 2 1 1 2 2 2 3 11 2 7 1949500000 1688900000 6770000 253840000 + 720 35;53;91;57;548 750 3039;3040;3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058 2494;2495;2496;2497;2498;2499;2500;2501;2502;2503;2504;2505;2506;2507;2508;2509;2510;2511;2512;2513;2514 2506 20 1656800000 9467700 105690000 ALEEANTELEVK QNLNDRLASYLDKVRALEEANTELEVKIRD KVRALEEANTELEVKIRDWYQRQAPGPARD R A L V K I 2 0 1 0 0 0 4 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1344.6773 Q04695;CON__Q04695 Q04695 104 115 KRT17 Keratin, type I cytoskeletal 17 no no 2 7.1088E-18 190.24 By MS/MS By MS/MS By MS/MS 4.85 2.51 1 2 1 1 4 2 1 1 8 1 4 704980000 180410000 50074000 474500000 + 721 73 751 3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071 2515;2516;2517;2518;2519;2520;2521;2522;2523;2524;2525;2526 2518 12 152700000 12908000 68285000 ALEEETKNHEAQIQDMR ELRTKREQEVAELKKALEEETKNHEAQIQD EEETKNHEAQIQDMRQRHATALEELSEQLE K A L M R Q 2 1 1 1 0 2 4 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 17 1 2040.9535 P35580 P35580 1182 1198 MYH10 Myosin-10 yes yes 2;3;4 1.0102E-09 174.39 By MS/MS By MS/MS 1.91 1.38 7 1 1 1 1 4 7 131530000 0 49585000 81947000 722 753 752;753 3072;3073;3074;3075;3076;3077;3078;3079;3080;3081;3082 2527;2528;2529;2530;2531;2532;2533 2533 367 7 0 24056000 17087000 ALEESESSQLISPPLAQAIR RSHISDQSPLSSKRKALEESESSQLISPPL ESSQLISPPLAQAIRDYVNSLLVQGGVGSL K A L I R D 3 1 0 0 0 2 3 0 0 2 3 0 0 0 2 4 0 0 0 0 0 0 20 0 2138.1219 P42166 P42166 359 378 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 1.5978E-102 257.76 By MS/MS 2.5 0.5 1 1 2 10037000 0 0 10037000 723 798 754 3083;3084 2534 2534 1 0 0 1993300 ALEESNYELEGK QNLNDRLASYLDKVRALEESNYELEGKIKE KVRALEESNYELEGKIKEWYEKHGNSHQGE R A L G K I 1 0 1 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 12 0 1380.6409 P13645;CON__P13645;CON__P02535-1 P13645 166 177 KRT10 Keratin, type I cytoskeletal 10 no no 2 2.9202E-33 187.64 By MS/MS By MS/MS By MS/MS 5.37 2.81 4 3 4 3 3 5 4 3 3 3 16 8 11 20295000000 14817000000 439460000 5039300000 + 724 56;36 755 3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119 2535;2536;2537;2538;2539;2540;2541;2542;2543;2544;2545;2546;2547;2548;2549;2550;2551;2552;2553;2554;2555;2556;2557;2558;2559;2560;2561;2562;2563;2564;2565;2566;2567;2568;2569;2570;2571;2572;2573;2574;2575;2576;2577 2570 43 13476000000 253010000 1914800000 ALEFLDQLLLQNIR VVPVVMDCESTVQEKALEFLDQLLLQNIRH KALEFLDQLLLQNIRHHSHFHSGDDSQVLA K A L I R H 1 1 1 1 0 2 1 0 0 1 5 0 0 1 0 0 0 0 0 0 0 0 14 0 1684.9512 P42695 P42695 639 652 NCAPD3 Condensin-2 complex subunit D3 yes yes 2 1.8027E-07 170.72 By MS/MS 1.5 0.5 1 1 2 3940100 0 0 3940100 725 806 756 3120;3121 2578;2579 2578 1 0 0 869490 ALEFVTNPDIAAK QKQANEKRALRKKRKALEFVTNPDIAAKKK RKALEFVTNPDIAAKKKMKKHKNKSEAKKR K A L A K K 3 0 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 13 0 1387.7347 O75691 O75691 2732 2744 UTP20 Small subunit processome component 20 homolog yes yes 2 0.038994 72.2 By MS/MS 1 0 1 1 4164600 0 0 4164600 726 280 757 3122 2580 2580 1 0 0 897330 ALEHFTDLYDIK AHIAQLCEKAGLLQRALEHFTDLYDIKRAV LQRALEHFTDLYDIKRAVVHTHLLNPEWLV R A L I K R 1 0 0 2 0 0 1 0 1 1 2 1 0 1 0 0 1 0 1 0 0 0 12 0 1463.7296 Q00610 Q00610 626 637 CLTC Clathrin heavy chain 1 yes yes 2;3 3.8227E-12 180.09 By matching By MS/MS 1.25 0.433 3 1 1 3 51211000 0 955670 50256000 727 1125 758 3123;3124;3125;3126 2581;2582;2583 2581 3 0 467120 10963000 ALEHFTDLYDIKR AHIAQLCEKAGLLQRALEHFTDLYDIKRAV QRALEHFTDLYDIKRAVVHTHLLNPEWLVN R A L K R A 1 1 0 2 0 0 1 0 1 1 2 1 0 1 0 0 1 0 1 0 0 0 13 1 1619.8308 Q00610 Q00610 626 638 CLTC Clathrin heavy chain 1 yes yes 2;3;4 1.2701E-24 202.56 By MS/MS By MS/MS 1.78 0.786 4 3 2 2 7 111570000 0 8546500 103030000 728 1125 759 3127;3128;3129;3130;3131;3132;3133;3134;3135 2584;2585;2586;2587;2588;2589 2588 6 0 3931600 22276000 ALEKEEEEEKQK MDKEDALICFEEHIRALEKEEEEEKQKSLL HIRALEKEEEEEKQKSLLRERRRQRKNRES R A L Q K S 1 0 0 0 0 1 6 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 12 2 1488.7308 O75400 O75400 587 598 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 3 0.017952 71.085 By MS/MS 2.5 0.5 1 1 2 1221100 0 1221100 0 729 258 760 3136;3137 2590;2591 2591 2 0 546710 0 ALELDPNLYR KGFMDGKQACERMIRALELDPNLYRIGQSK ERMIRALELDPNLYRIGQSKIFFRAGVLAH R A L Y R I 1 1 1 1 0 0 1 0 0 0 3 0 0 0 1 0 0 0 1 0 0 0 10 0 1202.6295 P35580 P35580 753 762 MYH10 Myosin-10 no no 2 0.00014951 143.01 By MS/MS 1.5 0.5 1 1 2 102070000 0 102070000 0 730 753 761 3138;3139 2592;2593 2592 2 0 49499000 0 ALELDSNLYR KGFMDGKQACVLMIKALELDSNLYRIGQSK VLMIKALELDSNLYRIGQSKVFFRAGVLAH K A L Y R I 1 1 1 1 0 0 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1192.6088 P35579 P35579 746 755 MYH9 Myosin-9 yes yes 2 3.66E-22 187 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 438560000 0 324950000 113600000 731 752 762 3140;3141;3142 2594;2595;2596 2594 3 0 157940000 24478000 ALELENDR RELNDRLAHYIDRVRALELENDRLLLKISE HYIDRVRALELENDRLLLKISEKEEVTTRE R A L D R L 1 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 958.47197 Q03252 Q03252 66 73 LMNB2 Lamin-B2 yes yes 2 2.5318E-06 160.91 By MS/MS By MS/MS 4.2 1.17 2 1 1 1 1 4 92265000 0 9570200 82695000 732 1156 763 3143;3144;3145;3146;3147 2597;2598;2599 2598 3 0 4079800 14979000 ALELPLAASSIPRPR TPSLELGPIPAGEEKALELPLAASSIPRPR ALELPLAASSIPRPRTPSPESHRSPAEGSE K A L P R T 3 2 0 0 0 0 1 0 0 1 3 0 0 0 3 2 0 0 0 0 0 0 15 1 1589.9253 Q66K74 Q66K74 623 637 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 3 9.4962E-05 114.74 By MS/MS 2 0 1 1 3264300 0 0 3264300 733 1465 764 3148 2600 2600 1 0 0 737670 ALELSGTAVPPDLEK FITEDQARYAGDIIKALELSGTAVPPDLEK ALELSGTAVPPDLEKLWSDFKDQQKAEGKI K A L E K L 2 0 0 1 0 0 2 1 0 0 3 1 0 0 2 1 1 0 0 1 0 0 15 0 1538.8192 Q7L014 Q7L014 737 751 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.00066707 101.93 By MS/MS 2 0 1 1 6440800 0 0 6440800 734 1520 765 3149 2601 2601 1 0 0 1455500 ALELTGLK KFGYVDFESAEDLEKALELTGLKVFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD K A L L K V 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 843.50657 P19338 P19338 363 370 NCL Nucleolin yes yes 1;2 0.0044378 113.14 By matching By MS/MS By MS/MS 4.21 2.48 2 4 3 2 3 2 1 1 1 1 6 12 866200000 3613000 304530000 558050000 735 604 766 3150;3151;3152;3153;3154;3155;3156;3157;3158;3159;3160;3161;3162;3163;3164;3165;3166;3167;3168 2602;2603;2604;2605;2606;2607;2608;2609;2610;2611;2612 2604 10 4353200 124740000 115500000 ALEPLEGLETMR MNISSQGDGACVLLRALEPLEGLETMRQLR LLRALEPLEGLETMRQLRSTLRKGTASRVL R A L M R Q 1 1 0 0 0 0 3 1 0 0 3 0 1 0 1 0 1 0 0 0 0 0 12 0 1357.6912 P29372 P29372 183 194 MPG DNA-3-methyladenine glycosylase yes yes 2 5.2518E-05 145.84 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 41745000 0 4126300 37619000 736 698 767 3169;3170;3171 2613;2614;2615 2614 3 0 1428400 5787100 ALEQIDENLIYWPR RRLWERVRLSKNYEKALEQIDENLIYWPRF KALEQIDENLIYWPRFIRHKCKQRFTKITQ K A L P R F 1 1 1 1 0 1 2 0 0 2 2 0 0 0 1 0 0 1 1 0 0 0 14 0 1758.8941 Q9BXY0 Q9BXY0 90 103 MAK16 Protein MAK16 homolog yes yes 2 5.3361E-127 279.64 By MS/MS 5 0 1 1 9470300 0 0 9470300 737 1931 768 3172 2616 2616 1 0 0 1320900 ALEQLNGFELAGRPMK GYGFITFSDSECAKKALEQLNGFELAGRPM LEQLNGFELAGRPMKVGHVTERTDASSASS K A L M K V 2 1 1 0 0 1 2 2 0 0 3 1 1 1 1 0 0 0 0 0 0 0 16 1 1772.9243 Q14498 Q14498 307 322 RBM39 RNA-binding protein 39 yes yes 2;3 8.9787E-26 204.49 By MS/MS By MS/MS 4.75 0.433 1 3 2 2 21039000 0 13103000 7936200 738 1302 769 3173;3174;3175;3176 2617;2618;2619;2620 2619 4 0 3377400 1107000 ALEQQVEEMK DDVGKSVHELEKSKRALEQQVEEMKTQLEE EKSKRALEQQVEEMKTQLEELEDELQATED R A L M K T 1 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1203.5805 P35579 P35579 1529 1538 MYH9 Myosin-9 yes yes 2 4.9194E-05 149.94 By matching By MS/MS By MS/MS 1.57 0.728 4 2 1 1 3 3 488890000 6488000 371640000 110760000 739 752 770;771 3177;3178;3179;3180;3181;3182;3183 2621;2622;2623;2624 2624 345 4 6488000 181170000 23922000 ALEQQVEEMR DDVGKNVHELEKSKRALEQQVEEMRTQLEE EKSKRALEQQVEEMRTQLEELEDELQATED R A L M R T 1 1 0 0 0 2 3 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1231.5867 P35580 P35580 1536 1545 MYH10 Myosin-10 yes yes 2 0.0001182 145.17 By matching By MS/MS By MS/MS 1.2 0.4 4 1 1 3 1 155300000 908810 88981000 65414000 740 753 772;773 3184;3185;3186;3187;3188 2625;2626;2627;2628;2629 2626 368 5 908810 43263000 14094000 ALESDMAPVLIMATNR EVHMLDIESFSFLNRALESDMAPVLIMATN LESDMAPVLIMATNRGITRIRGTSYQSPHG R A L N R G 3 1 1 1 0 0 1 0 0 1 2 0 2 0 1 1 1 0 0 1 0 0 16 0 1730.8695 Q9Y230 Q9Y230 315 330 RUVBL2 RuvB-like 2 yes yes 2;3 6.0331E-17 131.69 By MS/MS By MS/MS 4.71 1.16 1 2 3 1 3 4 48922000 0 9548200 39373000 741 2228 774 3189;3190;3191;3192;3193;3194;3195 2630;2631;2632;2633;2634;2635 2631 6 0 3357700 5916500 ALESGDVNTVWK SVAVEMLSSVALINRALESGDVNTVWKQLS INRALESGDVNTVWKQLSSSVTGLTNIEEE R A L W K Q 1 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 1 1 0 2 0 0 12 0 1317.6565 P46940 P46940 466 477 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.02133 83.862 By MS/MS 2 0 1 1 2793000 0 2793000 0 742 835 775 3196 2636 2636 1 0 1257700 0 ALESPERPFLAILGGAK AGGFLMKKELNYFAKALESPERPFLAILGG ESPERPFLAILGGAKVADKIQLINNMLDKV K A L A K V 3 1 0 0 0 0 2 2 0 1 3 1 0 1 2 1 0 0 0 0 0 0 17 1 1767.9883 P00558 P00558 200 216 PGK1 Phosphoglycerate kinase 1 yes yes 2 6.02E-05 127.79 By MS/MS 5 0 1 1 9646300 0 0 9646300 743 363 776 3197 2637 2637 1 0 0 1345500 ALESSIAPIVIFASNR EVHMLDIECFTYLHRALESSIAPIVIFASN LESSIAPIVIFASNRGNCVIRGTEDITSPH R A L N R G 3 1 1 0 0 0 1 0 0 3 1 0 0 1 1 3 0 0 0 1 0 0 16 0 1686.9305 Q9Y265 Q9Y265 318 333 RUVBL1 RuvB-like 1 yes yes 2;3 9.7205E-07 158.93 By MS/MS By MS/MS 4.25 0.661 1 4 3 4 4 112030000 0 25903000 86132000 744 2234 777 3198;3199;3200;3201;3202;3203;3204;3205 2638;2639;2640;2641;2642 2642 5 0 8272100 13811000 ALESSLWELQALQR ADPYDPGEEDPAQSRALESSLWELQALQRH RALESSLWELQALQRHYHPEVSKAASVINQ R A L Q R H 2 1 0 0 0 2 2 0 0 0 4 0 0 0 0 2 0 1 0 0 0 0 14 0 1642.8679 Q9BVI4 Q9BVI4 430 443 NOC4L Nucleolar complex protein 4 homolog yes yes 2 2.0699E-12 184.71 By MS/MS 4 0 1 1 4917900 0 4917900 0 745 1914 778 3206 2643 2643 1 0 1632100 0 ALETDSVSGVSK NGTANGFSEINSKEKALETDSVSGVSKQSK KEKALETDSVSGVSKQSKKQKL________ K A L S K Q 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 3 1 0 0 2 0 0 12 0 1191.5983 Q15022 Q15022 721 732 SUZ12 Polycomb protein SUZ12 yes yes 2 0.012213 90.827 By MS/MS 3 0.816 1 1 1 3 17919000 0 0 17919000 746 1333 779 3207;3208;3209 2644 2644 1 0 0 3429400 ALETHTYFER SYDGLNISWSRQNGKALETHTYFERHLNDT RQNGKALETHTYFERHLNDTFSARGEASVC K A L E R H 1 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 2 0 1 0 0 0 10 0 1265.6041 CON__Q1RMK2 CON__Q1RMK2 411 420 yes yes 3 0.015097 66.19 By matching By MS/MS 3 0 2 1 1 16973000 3752600 0 13220000 + 747 76 780 3210;3211 2645 2645 1 4329700 0 2564100 ALETLTGALFQRPPLIAAVK VRLHNAIEGGTQLSRALETLTGALFQRPPL TGALFQRPPLIAAVKRQLRVRTIYESKMIE R A L V K R 4 1 0 0 0 1 1 1 0 1 4 1 0 1 2 0 2 0 0 1 0 0 20 1 2108.2358 O60832 O60832 172 191 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2;3 2.1719E-162 290.21 By MS/MS By MS/MS 3.58 1.19 1 1 3 4 3 5 7 361560000 0 203330000 158230000 748 235 781 3212;3213;3214;3215;3216;3217;3218;3219;3220;3221;3222;3223 2646;2647;2648;2649;2650;2651;2652;2653;2654;2655;2656;2657 2650 12 0 68054000 26942000 ALEYTIYNQELNETR KEELAQYQKWDKMRRALEYTIYNQELNETR ALEYTIYNQELNETRAKLDELSAKRETSGE R A L T R A 1 1 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 15 0 1855.8952 Q9UQE7 Q9UQE7 222 236 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 1.1906E-107 265.61 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 85314000 0 7985900 77328000 749 2222 782 3224;3225;3226;3227;3228;3229 2658;2659;2660;2661;2662 2660 5 0 3663000 17212000 ALEYVEAK KQHGTEKDVQAVKAKALEYVEAKSSVLED_ VQAVKAKALEYVEAKSSVLED_________ K A L A K S 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 8 0 921.48075 Q14690 Q14690 1858 1865 PDCD11 Protein RRP5 homolog yes yes 2 0.048786 73.26 By MS/MS 1 0 1 1 5716900 0 5716900 0 750 1314 783 3230 2663 2663 1 0 2794300 0 ALFEIALR SDSAYVAQNAARIVRALFEIALRKRWPTMT NAARIVRALFEIALRKRWPTMTYRLLNLSK R A L L R K 2 1 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 931.5491 Q8N3C0 Q8N3C0 1092 1099 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0014636 115.46 By MS/MS 1.5 0.5 1 1 2 3083900 0 3083900 0 751 1602 784 3231;3232 2664 2664 1 0 1480600 0 ALFLIPR MAEGAPPLCDMHPMRALFLIPRNPPPRLKS LCDMHPMRALFLIPRNPPPRLKSKKWSKKF R A L P R N 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 828.52216 O95819;Q8N4C8;Q9UKE5 O95819 241 247 MAP4K4;MINK1;TNIK Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1;TRAF2 and NCK-interacting protein kinase yes no 2 0.060383 74.832 By MS/MS 3 0 1 1 927890 0 927890 0 752 344 785 3233 2665 2665 1 0 395560 0 ALFYVAR ______________________________ ______________________________ M A L A R Y 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 838.47012 Q8N8A6 Q8N8A6 2 8 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.023439 77.72 By MS/MS 3 0 1 1 632820 0 632820 0 753 1615 786 3234 2666 2666 1 0 269770 0 ALGALAAALR RRLQPRKEFVEKARRALGALAAALRERGGR EKARRALGALAAALRERGGRLGAAAPRVLK R A L L R E 5 1 0 0 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 10 0 925.5709 Q9Y6K5 Q9Y6K5 32 41 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 3.7936E-22 186.67 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 11365000 0 6740800 4624100 754 2314 787 3235;3236;3237 2667;2668;2669 2669 3 0 3013800 1045000 ALGEEEEEPPR CPATAPQEAPAPEGRALGEEEEEPPRAGEG PEGRALGEEEEEPPRAGEGRPAGREEEEEE R A L P R A 1 1 0 0 0 0 5 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 11 0 1254.5728 Q96B54 Q96B54 130 140 ZNF428 Zinc finger protein 428 yes yes 2 0.00032802 128.12 By MS/MS 6 0 1 1 3956200 0 0 3956200 755 1755 788 3238 2670 2670 1 0 0 591890 ALGEPITLFGEGPAER INVSTDDSEVKACLRALGEPITLFGEGPAE LGEPITLFGEGPAERRERLRNILSVVGTDA R A L E R R 2 1 0 0 0 0 3 3 0 1 2 0 0 1 2 0 1 0 0 0 0 0 16 0 1655.8519 O43172 O43172 114 129 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 4.7219E-05 136.96 By MS/MS By MS/MS 4 0 2 1 1 22042000 0 4229500 17812000 756 189 789 3239;3240 2671;2672 2672 2 0 1403600 2909300 ALGEYLER RSLERLADLLGKIQKALGEYLERERSSFPR LLGKIQKALGEYLERERSSFPRFYFVGDED K A L E R E 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 949.4869 Q14204 Q14204 1614 1621 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0015772 113.89 By MS/MS 1 0 1 1 3826700 0 3826700 0 757 1292 790 3241 2673 2673 1 0 1870400 0 ALGFMYIR QVMGLITHTDSPYIRALGFMYIRYTQPPTD TDSPYIRALGFMYIRYTQPPTDLWDWFESF R A L I R Y 1 1 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 1 0 0 0 8 0 969.51061 Q5VTL8 Q5VTL8 159 166 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2 0.00098128 122.15 By MS/MS By MS/MS 3 0 2 1 1 13678000 0 5132100 8546300 758 1461 791 3242;3243 2674;2675 2674 2 0 2187800 1657600 ALGFVSDR LPYIKQEVPIIIVFRALGFVSDRDILEHII PIIIVFRALGFVSDRDILEHIIYDFEDPEM R A L D R D 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 863.45012 P30876 P30876 275 282 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 0.066331 68.915 By matching By matching By MS/MS 1.33 0.471 2 1 1 1 1 39809000 31202000 5315800 3292000 759 715 792 3244;3245;3246 2676 2676 1 31202000 2598300 743930 ALGGEDVR AEKQYGFCKGSVIQKALGGEDVRVTCTLFQ KGSVIQKALGGEDVRVTCTLFQTQPVIPQP K A L V R V 1 1 0 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 815.41373 CON__P12763 CON__P12763 238 245 yes yes 2 4.4404E-10 127.84 By MS/MS By MS/MS By MS/MS 4.56 1.86 1 2 2 4 3 3 2 1 10 3 5 319290000 211890000 48902000 58494000 + 760 55 793 3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262;3263;3264 2677;2678;2679;2680;2681;2682;2683;2684;2685;2686;2687;2688;2689;2690 2688 14 197180000 15032000 10710000 ALGLFSNDIPHVVR ASERRTASALFAGFRALGLFSNDIPHVVRF RALGLFSNDIPHVVRFSALKRRFYVTTCVG R A L V R F 1 1 1 1 0 0 0 1 1 1 2 0 0 1 1 1 0 0 0 2 0 0 14 0 1536.8413 Q8NI36 Q8NI36 75 88 WDR36 WD repeat-containing protein 36 yes yes 3 0.00039964 101.39 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 15522000 0 4840800 10681000 761 1648 794 3265;3266;3267;3268 2691;2692 2691 2 0 2179900 2288400 ALGLGVEQLPVVFEDVVLHQATILPK PATGYLSIVWKTLARALGLGVEQLPVVFED VFEDVVLHQATILPKTGTVSLEVRLLEASR R A L P K T 2 0 0 1 0 2 2 2 1 1 5 1 0 1 2 0 1 0 0 5 0 0 26 0 2784.579 P49327 P49327 902 927 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 0.0013373 44.161 By MS/MS 1.5 0.5 1 1 2 9794500 0 0 9794500 762 853 795 3269;3270 2693;2694 2694 2 0 0 2178200 ALGLNENDYK LARLDPRLFCKALFKALGLNENDYKFGLTK KALFKALGLNENDYKFGLTKVFFRPGKFAE K A L Y K F 1 0 2 1 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1135.551 Q9UM54 Q9UM54 741 750 MYO6 Unconventional myosin-VI yes yes 2 0.034327 76.827 By MS/MS 1 0 1 1 0 0 0 0 763 2198 796 3271 2695 2695 1 0 0 0 ALGLSTDDAYEELR NARHSDASLTDTVNKALGLSTDDAYEELRQ KALGLSTDDAYEELRQKHEYELNSTPDKKD K A L L R Q 2 1 0 2 0 0 2 1 0 0 3 0 0 0 0 1 1 0 1 0 0 0 14 0 1551.7417 Q9UK61 Q9UK61 796 809 FAM208A Protein FAM208A yes yes 2 0.00039499 133.12 By matching By MS/MS 1.33 0.471 2 1 1 2 16592000 0 1116100 15476000 764 2175 797 3272;3273;3274 2696;2697 2697 2 0 545550 3408600 ALGQNPTNAEVLK GDGKILYSQCGDVMRALGQNPTNAEVLKVL MRALGQNPTNAEVLKVLGNPKSDEMNVKVL R A L L K V 2 0 2 0 0 1 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1353.7252 P60660;P14649 P60660 38 50 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B no no 2 8.559E-13 171.85 By MS/MS By MS/MS By MS/MS 8.62 1.11 2 1 3 2 1 4 3 885480000 21281000 837870000 26329000 765 965;562 798 3275;3276;3277;3278;3279;3280;3281;3282 2698;2699;2700;2701;2702;2703;2704;2705 2704 8 11945000 690520000 16167000 ALGQNPTNAEVLKVLGNPK GDGKILYSQCGDVMRALGQNPTNAEVLKVL NPTNAEVLKVLGNPKSDEMNVKVLDFEHFL R A L P K S 2 0 3 0 0 1 1 2 0 0 3 2 0 0 2 0 1 0 0 2 0 0 19 1 1962.0898 P60660;P14649 P60660 38 56 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B no no 3 2.6815E-06 102.58 By MS/MS 8.5 0.5 1 1 2 8793900 0 8793900 0 766 965;562 799 3283;3284 2706;2707 2707 2 0 6345300 0 ALGTPNNEVWPEVESLQDYK FHGDSEIDQLFRIFRALGTPNNEVWPEVES NNEVWPEVESLQDYKNTFPKWKPGSLASHV R A L Y K N 1 0 2 1 0 1 3 1 0 0 2 1 0 0 2 1 1 1 1 2 0 0 20 0 2288.0961 P06493 P06493 219 238 CDK1 Cyclin-dependent kinase 1 yes yes 2 2.7952E-07 106.32 By MS/MS 6 0 1 1 7035700 0 0 7035700 767 443 800 3285 2708 2708 1 0 0 1052600 ALGTPNNEVWPEVESLQDYKNTFPK FHGDSEIDQLFRIFRALGTPNNEVWPEVES PEVESLQDYKNTFPKWKPGSLASHVKNLDE R A L P K W 1 0 3 1 0 1 3 1 0 0 2 2 0 1 3 1 2 1 1 2 0 0 25 1 2875.4028 P06493 P06493 219 243 CDK1 Cyclin-dependent kinase 1 yes yes 3 0.049272 24.351 By MS/MS 6 0 1 1 2270000 0 2270000 0 768 443 801 3286 2709 2709 1 0 785780 0 ALGVLAQLIWSR MTEMNYYTVLFGVSRALGVLAQLIWSRALG VSRALGVLAQLIWSRALGFPLERPKSMSTE R A L S R A 2 1 0 0 0 1 0 1 0 1 3 0 0 0 0 1 0 1 0 1 0 0 12 0 1325.782 O75390 O75390 429 440 CS Citrate synthase, mitochondrial yes yes 2 0.02919 78.655 By MS/MS 5 0 1 1 653960 0 653960 0 769 257 802 3287 2710 2710 1 0 168570 0 ALGVTALFDK KFKLEKDYDLVGALRALGVTALFDKHSNTT VGALRALGVTALFDKHSNTTGITGQRIVID R A L D K H 2 0 0 1 0 0 0 1 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1033.5808 CON__ENSEMBL:ENSBTAP00000018574 CON__ENSEMBL:ENSBTAP00000018574 408 417 yes yes 2 0.0152 85.731 By matching By MS/MS 3 0 2 1 1 10844000 5595100 0 5248600 + 770 27 803 3288;3289 2711 2711 1 6455500 0 1018000 ALHFAISEYNK GGIYDADLNDEWVQRALHFAISEYNKATED WVQRALHFAISEYNKATEDEYYRRPLQVLR R A L N K A 2 0 1 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 1 0 0 0 11 0 1291.6561 P01036;P01037 P01036 47 57 CST4;CST1 Cystatin-S;Cystatin-SN no no 2;3 2.1209E-26 196.99 By MS/MS By matching 5.78 3.1 2 2 2 1 1 1 2 2 3 2 16 2 283710000 283050000 660110 0 771 372;373 804 3290;3291;3292;3293;3294;3295;3296;3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307 2712;2713;2714;2715;2716;2717;2718;2719 2718 8 296930000 1982900 0 ALHLSDLFSPLPILELTR DSLRALSGQAGCRLRALHLSDLFSPLPILE LSDLFSPLPILELTRAIVRALPLLRVLSIR R A L T R A 1 1 0 1 0 0 1 0 1 1 6 0 0 1 2 2 1 0 0 0 0 0 18 0 2034.1514 Q15345 Q15345 524 541 LRRC41 Leucine-rich repeat-containing protein 41 yes yes 3 4.0834E-09 119.47 By MS/MS 3.5 0.5 1 1 2 4243300 0 0 4243300 772 1355 805 3308;3309 2720 2720 1 0 0 812550 ALIAAQLDNAIEK LSKKVERREKRREEKALIAAQLDNAIEKEL EKALIAAQLDNAIEKELLERLKQDTYGDIY K A L E K E 4 0 1 1 0 1 1 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1368.7613 Q9BXY0 Q9BXY0 152 164 MAK16 Protein MAK16 homolog yes yes 2 6.7662E-05 156.16 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 59831000 0 9302000 50529000 773 1931 806 3310;3311;3312 2721;2722 2721 2 0 2397800 7095500 ALIAAQYSGAQVR AGTLYTYPENWRAFKALIAAQYSGAQVRVL FKALIAAQYSGAQVRVLSAPPHFHFGQTNR K A L V R V 4 1 0 0 0 2 0 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 13 0 1346.7306 P26641 P26641 18 30 EEF1G Elongation factor 1-gamma yes yes 2 4.5677E-25 204.07 By MS/MS By MS/MS 5.3 2.1 1 1 2 2 1 1 1 1 4 6 337440000 0 65562000 271880000 774 674 807 3313;3314;3315;3316;3317;3318;3319;3320;3321;3322 2723;2724;2725;2726;2727;2728 2725 6 0 18226000 41512000 ALIAGGGAPEIELALR IHDALCVIRCLVKKRALIAGGGAPEIELAL LIAGGGAPEIELALRLTEYSRTLSGMESYC R A L L R L 4 1 0 0 0 0 2 3 0 2 3 0 0 0 1 0 0 0 0 0 0 0 16 0 1549.8828 P50991 P50991 420 435 CCT4 T-complex protein 1 subunit delta yes yes 2 3.4507E-05 126.71 By MS/MS By MS/MS By MS/MS 5.44 2.59 2 3 1 1 2 1 3 5 41017000 4798600 15446000 20773000 775 886 808 3323;3324;3325;3326;3327;3328;3329;3330;3331 2729;2730;2731;2732;2733 2729 5 3743700 9442500 4573400 ALIEMEK AQPGSFEYEYAMRWKALIEMEKQQQDQVDR YEYAMRWKALIEMEKQQQDQVDRNIKEARE K A L E K Q 1 0 0 0 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 7 0 832.43644 Q15233 Q15233 273 279 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.055398 76.035 By matching By MS/MS 3 1.41 1 1 1 1 1 1 4 255150000 0 3458500 251690000 776 1351 809 3332;3333;3334;3335;3336 2734 2734 1 0 1690500 43500000 ALIGDDVGLTSYK RYHSRRIQRDVIKKRALIGDDVGLTSYKHR KRALIGDDVGLTSYKHRHSGLVNVPEEPIE R A L Y K H 1 0 0 2 0 0 0 2 0 1 2 1 0 0 0 1 1 0 1 1 0 0 13 0 1350.7031 Q53F19 Q53F19 317 329 C17orf85 Uncharacterized protein C17orf85 yes yes 2 0.033469 63.694 By MS/MS 3 0 1 1 0 0 0 0 777 1422 810 3337 2735 2735 1 0 0 0 ALILSPTR MFERLKTHSAQTGARALILSPTRELALQTL SAQTGARALILSPTRELALQTLKFTKELGK R A L T R E 1 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 869.53345 Q8TDD1 Q8TDD1 169 176 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.021634 97.068 By MS/MS 3 0 1 1 0 0 0 0 778 1661 811 3338 2736 2736 1 0 0 0 ALINADELASDVAGAEALLDR LADFRDLTSWVTEMKALINADELASDVAGA ELASDVAGAEALLDRHQEHKGEIDAHEDSF K A L D R H 6 1 1 3 0 0 2 1 0 1 4 0 0 0 0 1 0 0 0 1 0 0 21 0 2126.0855 Q13813 Q13813 382 402 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.0996E-16 162.92 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 29933000 0 709720 29223000 779 1268 812 3339;3340;3341;3342;3343 2737;2738;2739;2740 2738 4 0 346900 6353200 ALINMSSLPAQDK TSCNVVWLDEMTATRALINMSSLPAQDKIR TRALINMSSLPAQDKIRSRDASEDKSAEKR R A L D K I 2 0 1 1 0 1 0 0 0 1 2 1 1 0 1 2 0 0 0 0 0 0 13 0 1386.7177 Q53F19 Q53F19 174 186 C17orf85 Uncharacterized protein C17orf85 yes yes 2 0.00027721 133.76 By MS/MS By MS/MS 3 0 2 1 1 17411000 0 7001800 10409000 780 1422 813 3344;3345 2741;2742 2741 2 0 2984900 2018900 ALIPLALEGTDVGQTK EVEDRGTVVAQGGGRALIPLALEGTDVGQT LIPLALEGTDVGQTKAAQALAKLTITSNPE R A L T K A 2 0 0 1 0 1 1 2 0 1 3 1 0 0 1 0 2 0 0 1 0 0 16 0 1624.9036 Q9H3U1 Q9H3U1 692 707 UNC45A Protein unc-45 homolog A yes yes 2 3.4711E-05 126.12 By MS/MS 3 1 1 1 2 11639000 0 11639000 0 781 1980 814 3346;3347 2743;2744 2743 1 0 4780100 0 ALIVEPSR NAQVTQTKFLPNAPKALIVEPSRELAEQTL FLPNAPKALIVEPSRELAEQTLNNIKQFKK K A L S R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 0 1 0 0 8 0 883.51272 Q92499 Q92499 289 296 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 0.0002213 138.07 By MS/MS 3 0 1 1 16350000 0 0 16350000 782 1705 815 3348 2745 2745 1 0 0 3171000 ALIVVPYAEGVIPDEAK AVVAQHLTNTVFVDRALIVVPYAEGVIPDE IVVPYAEGVIPDEAKALSLLAPANAVAGLL R A L A K A 3 0 0 1 0 0 2 1 0 2 1 1 0 0 2 0 0 0 1 3 0 0 17 0 1782.9768 Q05519 Q05519 104 120 SRSF11 Serine/arginine-rich splicing factor 11 yes yes 2 0.0028475 82.543 By MS/MS 3.5 0.5 1 1 2 6900100 0 6900100 0 783 1164 816 3349;3350 2746 2746 1 0 2544000 0 ALIVVQQGMTPSAK IKVYCQRMQEENITRALIVVQQGMTPSAKQ RALIVVQQGMTPSAKQSLVDMAPKYILEQF R A L A K Q 2 0 0 0 0 2 0 1 0 1 1 1 1 0 1 1 1 0 0 2 0 0 14 0 1441.7963 P19388 P19388 102 115 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 2 1.7909E-17 192.38 By MS/MS By MS/MS 7 0 4 2 2 61004000 0 20209000 40795000 784 607 817;818 3351;3352;3353;3354 2747;2748;2749 2749 265 3 0 11604000 7238800 ALKDEEKMELQEIQLK AADESERGMKVIENRALKDEEKMELQEIQL LKDEEKMELQEIQLKEAKHIAEEADRKYEE R A L L K E 1 0 0 1 0 2 4 0 0 1 3 3 1 0 0 0 0 0 0 0 0 0 16 2 1944.0238 P06753 P06753 135 150 TPM3 Tropomyosin alpha-3 chain yes yes 3 7.2942E-09 93.495 By MS/MS 6 0 1 1 0 0 0 0 785 450 819 3355 2750 2750 1 0 0 0 ALKDFVASIDATYAK RLLNNAFEELVAFQRALKDFVASIDATYAK ALKDFVASIDATYAKQYEEFYVGLEGSFGS R A L A K Q 4 0 0 2 0 0 0 0 0 1 1 2 0 1 0 1 1 0 1 1 0 0 15 1 1611.8508 P25205 P25205 79 93 MCM3 DNA replication licensing factor MCM3 yes yes 3 0.034766 47.537 By MS/MS 2 0 1 1 2442500 0 2442500 0 786 655 820 3356 2751 2751 1 0 1099900 0 ALKDYALEK ______________________________ ______________________________ M A L E K E 2 0 0 1 0 0 1 0 0 0 2 2 0 0 0 0 0 0 1 0 0 0 9 1 1049.5757 P33993 P33993 2 10 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.016584 52.549 By MS/MS 3 0 1 1 4311500 0 4311500 0 787 733 821 3357 2752 2752 0 0 1838000 0 ALKPEVDKLNIMAAK LRNAGNEQDLGIQYKALKPEVDKLNIMAAK ALKPEVDKLNIMAAKRQQELKDVGHRDQMA K A L A K R 3 0 1 1 0 0 1 0 0 1 2 3 1 0 1 0 0 0 0 1 0 0 15 2 1639.9331 P35221 P35221 179 193 CTNNA1 Catenin alpha-1 yes yes 4 0.043245 45.54 By MS/MS 2 0 1 1 4170000 0 0 4170000 788 739 822 3358 2753 2753 1 0 0 942340 ALLADAQLMLDHLK FESEKRLRKDLKRTKALLADAQLMLDHLKN KALLADAQLMLDHLKNSAPSKREIAQLKNQ K A L L K N 3 0 0 2 0 1 0 0 1 0 5 1 1 0 0 0 0 0 0 0 0 0 14 0 1550.849 Q92614 Q92614 1663 1676 MYO18A Unconventional myosin-XVIIIa yes yes 3 0.0025266 77.527 By MS/MS 1 0 1 1 3372400 0 0 3372400 789 1710 823 3359 2754 2754 1 0 0 726650 ALLAEGVILR LGETDEEKLFVETGKALLAEGVILRRVGEA VETGKALLAEGVILRRVGEARTQHGGSHVS K A L L R R 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1053.6546 Q9Y3D9 Q9Y3D9 124 133 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 2 0.0067625 94.114 By matching By MS/MS By MS/MS 7 0 3 1 1 1 20943000 365070 5945800 14632000 790 2272 824 3360;3361;3362 2755;2756 2755 2 786800 3414100 2596400 ALLANALTSALR LPLLGLHEAASFYQRALLANALTSALRLHQ YQRALLANALTSALRLHQRLPHFQLSRAFL R A L L R L 4 1 1 0 0 0 0 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 12 0 1212.719 P57088 P57088 58 69 TMEM33 Transmembrane protein 33 yes yes 2 5.9131E-89 253.74 By matching By MS/MS By MS/MS 7 0 3 1 1 1 30563000 390300 9254300 20919000 791 954 825 3363;3364;3365 2757;2758 2758 2 841180 5313900 3711900 ALLATQSDYFR DVTLVIEDHQFQAHKALLATQSDYFRIMFT QAHKALLATQSDYFRIMFTADMRERDQDKI K A L F R I 2 1 0 1 0 1 0 0 0 0 2 0 0 1 0 1 1 0 1 0 0 0 11 0 1283.651 Q96M94 Q96M94 47 57 KLHL15 Kelch-like protein 15 yes yes 2 2.1228E-15 130.75 By MS/MS 4 0 1 1 0 0 0 0 792 1808 826 3366 2759 2759 1 0 0 0 ALLAVIGADSVTLK EGAKSQEDTEAVFKKALLAVIGADSVTLKN KALLAVIGADSVTLKNKYLDWAYRSGGYKK K A L L K N 3 0 0 1 0 0 0 1 0 1 3 1 0 0 0 1 1 0 0 2 0 0 14 0 1369.8181 Q9NYH9 Q9NYH9 464 477 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 2 0.021085 73.9 By MS/MS 3 0 1 1 6563400 0 0 6563400 793 2098 827 3367 2760 2760 1 0 0 1273000 ALLAYAFALAGNQDK KTAQEGDHGSHVYTKALLAYAFALAGNQDK ALLAYAFALAGNQDKRKEVLKSLNEEAVKK K A L D K R 5 0 1 1 0 1 0 1 0 0 3 1 0 1 0 0 0 0 1 0 0 0 15 0 1564.8249 P01023 P01023 1148 1162 A2M Alpha-2-macroglobulin yes yes 2 0.00028937 124.39 By MS/MS By matching 9.5 0.5 1 1 1 1 3649900 2999000 650870 0 794 370 828 3368;3369 2761 2761 1 1683400 3292900 0 ALLDASETTSTR NRKVEQLQQEYTEMKALLDASETTSTRKIK EMKALLDASETTSTRKIKEEEKRVNSKFDT K A L T R K 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 2 3 0 0 0 0 0 12 0 1263.6307 Q14258 Q14258 250 261 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 1.1921E-05 156.83 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 50680000 0 25240000 25439000 795 1297 829 3370;3371;3372 2762;2763;2764 2764 3 0 9636000 4934000 ALLDQLMGTAR ______________________________ AQMRALLDQLMGTARDGDETRQRVKFTDDR R A L A R D 2 1 0 1 0 1 0 1 0 0 3 0 1 0 0 0 1 0 0 0 0 0 11 0 1187.6332 Q9NQ29 Q9NQ29 9 19 LUC7L Putative RNA-binding protein Luc7-like 1 yes yes 2 2.1456E-26 196.88 By matching By MS/MS By MS/MS 6.17 1.77 3 2 1 1 2 3 35928000 1087200 11167000 23674000 796 2030 830 3373;3374;3375;3376;3377;3378 2765;2766;2767;2768 2767 4 870960 3245600 3330000 ALLDSLQLGPDSLTVHLIHEVTK CKRQRSIRPGLSPYRALLDSLQLGPDSLTV GPDSLTVHLIHEVTKVLLVLELQGLQKNMT R A L T K V 1 0 0 2 0 1 1 1 2 1 6 1 0 0 1 2 2 0 0 2 0 0 23 0 2498.3744 Q14697 Q14697 62 84 GANAB Neutral alpha-glucosidase AB yes yes 3;4 0.00013054 67.614 By MS/MS 2 0 2 2 4413700 0 0 4413700 797 1317 831 3379;3380 2769;2770 2769 2 0 0 997400 ALLDYLDENTETDPSLVFSR KQVSGGEDEIQQLQKALLDYLDENTETDPS LDENTETDPSLVFSRKFYIAQWFRDTTLET K A L S R K 1 1 1 3 0 0 2 0 0 0 4 0 0 1 1 2 2 0 1 1 0 0 20 0 2297.1063 Q6KC79 Q6KC79 1654 1673 NIPBL Nipped-B-like protein yes yes 2;3 6.4185E-86 247.58 By MS/MS 1.33 0.471 2 1 3 10523000 0 0 10523000 798 1480 832 3381;3382;3383 2771;2772;2773 2771 3 0 0 2274100 ALLEAGALPNAPNSYGR WLATAAARGRVEEVRALLEAGALPNAPNSY LEAGALPNAPNSYGRRPIQVMMMGSARVAE R A L G R R 4 1 2 0 0 0 1 2 0 0 3 0 0 0 2 1 0 0 1 0 0 0 17 0 1712.8846 P42771 P42771 30 46 CDKN2A Cyclin-dependent kinase inhibitor 2A yes yes 2 2.0701E-19 188.91 By MS/MS By MS/MS 8.33 0.471 2 1 2 1 11678000 0 4922100 6755900 799 811 833 3384;3385;3386 2774;2775;2776 2776 3 0 2503300 1035700 ALLEGESNPEIVIWAEHVENMPSEFR LQVKTGLSLEVATYRALLEGESNPEIVIWA VIWAEHVENMPSEFRNKSYHYTDSLLQREN R A L F R N 2 1 2 0 0 0 6 1 1 2 2 0 1 1 2 2 0 1 0 2 0 0 26 0 2995.4386 O15061 O15061 313 338 SYNM Synemin yes yes 3 0.00057365 47.52 By MS/MS 2 0 1 1 0 0 0 0 800 164 834 3387 2777 2777 1 0 0 0 ALLELVPWR MEHRLVLDTVNEVSRALLELVPWRAREGLD VNEVSRALLELVPWRAREGLDKLVSDANEQ R A L W R A 1 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 1 0 1 0 0 9 0 1095.6441 Q9UPN3 Q9UPN3 5628 5636 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes yes 2 0.028639 77.674 By MS/MS 1 0 1 1 476570 0 476570 0 801 2214 835 3388 2778 2778 1 0 232940 0 ALLEVVQSGGK EAIETDDLTIKLVIKALLEVVQSGGKNIEL LVIKALLEVVQSGGKNIELAVMRRDQSLKI K A L G K N 1 0 0 0 0 1 1 2 0 0 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1099.6237 O14818;Q8TAA3 O14818 194 204 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2 0.022614 82.749 By MS/MS By matching 6.2 4.26 2 1 2 3 2 18708000 12191000 0 6517300 802 147 836 3389;3390;3391;3392;3393 2779;2780 2779 2 11293000 0 7026600 ALLFIPR LAVKHFSVEGQLEFRALLFIPRRAPFDLFE VEGQLEFRALLFIPRRAPFDLFENKKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 7 0 828.52216 P08238 P08238 331 337 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 0.0063833 126.05 By MS/MS By MS/MS 5.53 2.58 2 2 2 2 2 2 1 2 8 7 67919000 0 24904000 43015000 803 469 837 3394;3395;3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408 2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792 2787 12 0 27526000 27964000 ALLFVPR LAVKHFSVEGQLEFRALLFVPRRAPFDLFE VEGQLEFRALLFVPRRAPFDLFENRKKKNN R A L P R R 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 7 0 814.50651 P07900 P07900 339 345 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.010049 120.76 By MS/MS By MS/MS By MS/MS 4 2.26 3 3 2 1 1 1 2 3 6 65976000 10637000 13381000 41958000 804 466 838 3409;3410;3411;3412;3413;3414;3415;3416;3417;3418;3419 2793;2794;2795;2796;2797;2798;2799;2800;2801 2794 9 12358000 5541400 27811000 ALLLAQWAWQEGSVTR FDLSPDNEVLVTASRALLLAQWAWQEGSVT LLLAQWAWQEGSVTRLWKAIHTAPVATMAF R A L T R L 3 1 0 0 0 2 1 1 0 0 3 0 0 0 0 1 1 2 0 1 0 0 16 0 1827.9632 Q12788 Q12788 87 102 TBL3 Transducin beta-like protein 3 yes yes 2 4.296E-05 117.23 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 8382000 0 563710 7818300 805 1197 839 3420;3421;3422;3423 2802;2803;2804 2804 2 0 240310 1657600 ALLLLLVGGVDQSPR ASIAPEIYGHEDVKKALLLLLVGGVDQSPR ALLLLLVGGVDQSPRGMKIRGNINICLMGD K A L P R G 1 1 0 1 0 1 0 2 0 0 5 0 0 0 1 1 0 0 0 2 0 0 15 0 1549.9192 P33993 P33993 353 367 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.0063997 70.977 By MS/MS 3 0 1 1 0 0 0 0 806 733 840 3424 2805 2805 1 0 0 0 ALLLLLVGGVDQSPRGMK ASIAPEIYGHEDVKKALLLLLVGGVDQSPR LLLVGGVDQSPRGMKIRGNINICLMGDPGV K A L M K I 1 1 0 1 0 1 0 3 0 0 5 1 1 0 1 1 0 0 0 2 0 0 18 1 1866.0761 P33993 P33993 353 370 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.025146 42.338 By matching By MS/MS 8 0 2 1 1 29561000 6511600 0 23049000 807 733 841 3425;3426 2806 2806 332 1 5590500 0 3533700 ALLLPDYYLVTVMLSGIK VNAIIEHVRDGSVVRALLLPDYYLVTVMLS LPDYYLVTVMLSGIKCPTFRREADGSETPE R A L I K C 1 0 0 1 0 0 0 1 0 1 5 1 1 0 1 1 1 0 2 2 0 0 18 0 2008.1319 Q7KZF4 Q7KZF4 210 227 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 0.00015922 91.457 By MS/MS 2 0 2 2 16652000 0 0 16652000 808 1518 842 3427;3428 2807;2808 2808 2 0 0 3763100 ALLLSHQFK AAVEYYIKHQNRQLRALLLSHQFKRREADQ QNRQLRALLLSHQFKRREADQTHAQNFSSA R A L F K R 1 0 0 0 0 1 0 0 1 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 1055.6128 Q5SNT2 Q5SNT2 184 192 TMEM201 Transmembrane protein 201 yes yes 2 0.037059 75.243 By MS/MS 5 0 1 1 19104000 0 0 19104000 809 1444 843 3429 2809 2809 1 0 0 2664700 ALLLSTYIK HLLHSKFHLCSVPTRALLLSTYIKFVNLFP CSVPTRALLLSTYIKFVNLFPEVKPTIQDV R A L I K F 1 0 0 0 0 0 0 0 0 1 3 1 0 0 0 1 1 0 1 0 0 0 9 0 1020.6219 O94973;O95782 O94973 538 546 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 0.037165 75.213 By matching By MS/MS 2.33 0.471 2 1 1 2 21637000 1533200 0 20104000 810 306;339 844 3430;3431;3432 2810 2810 1 1847300 0 4400600 ALLLTGDFSQAGNK MRTESNLGAKVFFFKALLLTGDFSQAGNKG KALLLTGDFSQAGNKGHHVWVTKDELGDYL K A L N K G 2 0 1 1 0 1 0 2 0 0 3 1 0 1 0 1 1 0 0 0 0 0 14 0 1433.7514 Q9H2W6 Q9H2W6 236 249 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 0.00039137 146.11 By MS/MS By MS/MS 7.11 1.79 1 1 1 2 2 1 1 4 5 70929000 0 15238000 55691000 811 1977 845 3433;3434;3435;3436;3437;3438;3439;3440;3441 2811;2812;2813 2811 3 0 7787100 32096000 ALLNLPGTQTSGEAK EDKRRRRRRREKRKRALLNLPGTQTSGEAK ALLNLPGTQTSGEAKDGPPKKQVCGDSIKP R A L A K D 2 0 1 0 0 1 1 2 0 0 3 1 0 0 1 1 2 0 0 0 0 0 15 0 1498.7991 Q96GM8 Q96GM8 348 362 TOE1 Target of EGR1 protein 1 yes yes 2 0.00028933 124.42 By MS/MS 4 0 1 1 8217600 0 8217600 0 812 1792 846 3442 2814 2814 1 0 2727100 0 ALLNNSHYYHMAHGK TLGGTCLNVGCIPSKALLNNSHYYHMAHGK ALLNNSHYYHMAHGKDFASRGIEMSEVRLN K A L G K D 2 0 2 0 0 0 0 1 3 0 2 1 1 0 0 1 0 0 2 0 0 0 15 0 1754.8311 P09622 P09622 90 104 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes yes 3 0.058336 36.445 By MS/MS 4 0 1 1 953350 0 953350 0 813 489 847 3443 2815 2815 1 0 316380 0 ALLPVAYLLMEK A L E K 2 0 0 0 0 0 1 0 0 0 4 1 1 0 1 0 0 0 1 1 0 0 12 0 1359.7836 REV__A6NDX5 yes yes 2 0.032819 78.516 By MS/MS 1 0 1 1 22645000 0 0 22645000 + 814 2322 848 3444 2816 2816 745 1 0 0 4879300 ALLQAILQTEDMLK NGVTDGYLNSLCTVRALLQAILQTEDMLKV RALLQAILQTEDMLKVYEARLTEEETVCLD R A L L K V 2 0 0 1 0 2 1 0 0 1 4 1 1 0 0 0 1 0 0 0 0 0 14 0 1585.8749 P15924 P15924 772 785 DSP Desmoplakin yes yes 2;3 2.8598E-34 212.72 By MS/MS By MS/MS By MS/MS 4.4 2.99 7 1 3 4 2 1 1 2 3 1 14 3 8 162940000 35253000 12245000 115440000 815 572 849;850 3445;3446;3447;3448;3449;3450;3451;3452;3453;3454;3455;3456;3457;3458;3459;3460;3461;3462;3463;3464;3465;3466;3467;3468;3469 2817;2818;2819;2820;2821;2822;2823;2824;2825;2826;2827;2828;2829;2830;2831;2832;2833 2825 255 14 28536000 5901000 24350000 ALLQEFDNAVLSK QMMIDEFNKQSNAFKALLQEFDNAVLSKEN FKALLQEFDNAVLSKENHMQGKLNEKEKMI K A L S K E 2 0 1 1 0 1 1 0 0 0 3 1 0 1 0 1 0 0 0 1 0 0 13 0 1446.7718 Q02241 Q02241 524 536 KIF23 Kinesin-like protein KIF23 yes yes 2 0.00073655 117.98 By MS/MS 4.5 2.5 1 1 2 13060000 0 13060000 0 816 1145 851 3470;3471 2834;2835 2834 2 0 5973500 0 ALLQEMPLTALLR EHLLTNHLKSKEVWKALLQEMPLTALLRNL WKALLQEMPLTALLRNLGKMTANSVLEPGN K A L L R N 2 1 0 0 0 1 1 0 0 0 5 0 1 0 1 0 1 0 0 0 0 0 13 0 1467.8483 P10155 P10155 271 283 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 2 7.6698E-05 155.11 By MS/MS 4 0 1 1 5434800 0 5434800 0 817 507 852 3472 2836 2836 1 0 1803600 0 ALLQQQPEDDSKR TAIKRNENMAKGLQRALLQQQPEDDSKRSP QRALLQQQPEDDSKRSPRPQDLIRLYDIIL R A L K R S 1 1 0 2 0 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 13 1 1526.7689 Q9UHB9 Q9UHB9 405 417 SRP68 Signal recognition particle subunit SRP68 yes yes 3 2.5589E-07 105.17 By MS/MS By MS/MS 4.25 1.3 2 1 1 1 3 9590300 0 3908700 5681700 818 2152 853 3473;3474;3475;3476 2837;2838;2839 2838 3 0 1666300 817920 ALLQSSASR DLYKSEMEVQDAELKALLQSSASRKTQKKK QDAELKALLQSSASRKTQKKKKKKASKTAE K A L S R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 9 0 931.50869 Q9UQ80 Q9UQ80 356 364 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.00013922 129.55 By MS/MS By MS/MS 4.29 1.28 1 1 1 3 1 2 5 26387000 0 19429000 6957600 819 2220 854 3477;3478;3479;3480;3481;3482;3483 2840;2841;2842;2843 2842 4 0 5155400 1185000 ALLSDMVR EREQHKREEAIQNFKALLSDMVRSSDVSWS EAIQNFKALLSDMVRSSDVSWSDTRRTLRK K A L V R S 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 8 0 903.48479 O14776 O14776 905 912 TCERG1 Transcription elongation regulator 1 yes yes 2 0.0010881 120.65 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 21605000 0 5962600 15642000 820 145 855 3484;3485;3486;3487 2844;2845 2845 2 0 2685100 3338100 ALLSHDSGSDHLAFVR FSSSLQNRAEVDKVKALLSHDSGSDHLAFV LLSHDSGSDHLAFVRAVAGWEEVLRWQDRS K A L V R A 2 1 0 2 0 0 0 1 2 0 3 0 0 1 0 3 0 0 0 1 0 0 16 0 1723.8642 Q7L2E3 Q7L2E3 926 941 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2;3;4 2.8982E-28 206.58 By MS/MS By MS/MS 2.11 0.737 2 4 3 1 8 100300000 0 7729900 92569000 821 1522 856 3488;3489;3490;3491;3492;3493;3494;3495;3496 2846;2847;2848;2849;2850;2851;2852 2851 7 0 3480900 20411000 ALLTTNQLPQPDVFPLFK ALWDQLLEGRIKLQKALLTTNQLPQPDVFP TTNQLPQPDVFPLFKDKGGPEFSSALKNSH K A L F K D 1 0 1 1 0 2 0 0 0 0 4 1 0 2 3 0 2 0 0 1 0 0 18 0 2041.1248 Q9NY61 Q9NY61 247 264 AATF Protein AATF yes yes 2;3 6.747E-05 99.589 By MS/MS By MS/MS 3 0.577 1 4 1 3 3 51505000 0 11081000 40424000 822 2094 857 3497;3498;3499;3500;3501;3502 2853;2854;2855;2856 2855 4 0 4758300 7808800 ALMDEVVK PVGVFEWEAFARGTKALMDEVVKATSRGCI AFARGTKALMDEVVKATSRGCITIIGGGDT K A L V K A 1 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 8 0 903.47355 P00558 P00558 354 361 PGK1 Phosphoglycerate kinase 1 yes yes 2 0.047348 73.616 By MS/MS 6 0.816 1 1 1 3 12462000 0 0 12462000 823 363 858 3503;3504;3505 2857 2857 1 0 0 1934800 ALMDLLQLTR HTMLGSPEQPGVIPRALMDLLQLTREEGAE GVIPRALMDLLQLTREEGAEGRPWALSVTM R A L T R E 1 1 0 1 0 1 0 0 0 0 4 0 1 0 0 0 1 0 0 0 0 0 10 0 1172.6587 Q14807 Q14807 150 159 KIF22 Kinesin-like protein KIF22 yes yes 2 7.8061E-06 152.79 By MS/MS 2.5 1.12 1 1 1 1 4 11956000 0 0 11956000 824 1320 859 3506;3507;3508;3509 2858 2858 1 0 0 2344800 ALMGSPQLVAAVVR AMIVNQLSKKEASRRALMGSPQLVAAVVRT RALMGSPQLVAAVVRTMQNTSDLDTARCTT R A L V R T 3 1 0 0 0 1 0 1 0 0 2 0 1 0 1 1 0 0 0 3 0 0 14 0 1410.8017 P14923 P14923 178 191 JUP Junction plakoglobin yes yes 2 0.0003886 132.88 By MS/MS By MS/MS By MS/MS 6 2.95 2 1 3 1 3 3 2 2 3 14 1 5 120010000 78464000 6513100 35030000 825 567 860;861 3510;3511;3512;3513;3514;3515;3516;3517;3518;3519;3520;3521;3522;3523;3524;3525;3526;3527;3528;3529 2859;2860;2861;2862;2863;2864;2865;2866;2867;2868;2869;2870;2871;2872;2873 2866 253 13 84473000 2776500 10307000 ALMLQGVDLLADAVAVTMGPK TRAYAKDVKFGADARALMLQGVDLLADAVA VDLLADAVAVTMGPKGRTVIIEQSWGSPKV R A L P K G 4 0 0 2 0 1 0 2 0 0 4 1 2 0 1 0 1 0 0 3 0 0 21 0 2112.1323 P10809 P10809 38 58 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 1.5158E-16 163.45 By MS/MS By MS/MS 3.5 0.707 1 2 5 3 5 21822000 0 2011600 19811000 826 515 862;863 3530;3531;3532;3533;3534;3535;3536;3537 2874;2875;2876;2877;2878;2879;2880 2880 215 7 0 667590 3518000 ALNEINQFYQK TEEVKITVDDKHYQKALNEINQFYQKFPQY HYQKALNEINQFYQKFPQYLQYLYQGPIVL K A L Q K F 1 0 2 0 0 2 1 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 11 0 1366.6881 CON__P02663 CON__P02663 81 91 yes yes 2 3.8499E-05 146.81 By MS/MS By matching 5.6 3.88 2 1 1 1 4 1 130960000 126940000 0 4020800 + 827 40 864 3538;3539;3540;3541;3542 2881;2882;2883;2884 2884 4 129910000 0 866350 ALNGAEPNYHSLPSAR EERKLLLDPSSPPTKALNGAEPNYHSLPSA LNGAEPNYHSLPSARTDEQALLSSILAKTA K A L A R T 3 1 2 0 0 0 1 1 1 0 2 0 0 0 2 2 0 0 1 0 0 0 16 0 1695.8329 Q6IAA8 Q6IAA8 32 47 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 3 0.030779 43.024 By MS/MS 8 0 1 1 2433600 0 2433600 0 828 1475 865 3543 2885 2885 1 0 1107200 0 ALNHEIEELEK IKLQEELSENDKKIKALNHEIEELEKRKDK KKIKALNHEIEELEKRKDKETGGILRSLED K A L E K R 1 0 1 0 0 0 4 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1323.667 O95347 O95347 276 286 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 0.0075989 75.849 By MS/MS 1.5 0.5 1 1 2 22082000 0 0 22082000 829 321 866 3544;3545 2886 2886 1 0 0 4930900 ALNILQSTNMAFGK GMKALVTLSSGDMRRALNILQSTNMAFGKV RALNILQSTNMAFGKVTEETVYTCTGHPLK R A L G K V 2 0 2 0 0 1 0 1 0 1 2 1 1 1 0 1 1 0 0 0 0 0 14 0 1506.7864 P40937 P40937 216 229 RFC5 Replication factor C subunit 5 yes yes 2 0.00036861 148.32 By MS/MS By MS/MS 5.8 0.4 1 4 2 3 33112000 0 8965700 24146000 830 787 867;868 3546;3547;3548;3549;3550 2887;2888;2889;2890 2890 390 4 0 3103600 3574900 ALNIVDQEGSLLGK DSVLRGGSQVQARGRALNIVDQEGSLLGKG RALNIVDQEGSLLGKGETQGLLTAKGGVGK R A L G K G 1 0 1 1 0 1 1 2 0 1 3 1 0 0 0 1 0 0 0 1 0 0 14 0 1455.7933 Q8IX01 Q8IX01 215 228 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 2 0.00044664 121.08 By MS/MS 2 0.816 1 1 1 3 19583000 0 0 19583000 831 1578 869 3551;3552;3553 2891 2891 1 0 0 4218500 ALNLFQGSVEDTTGSQSLAALLNK FDFSQYMKLDIAAVRALNLFQGSVEDTTGS EDTTGSQSLAALLNKCKTPQGQRLVNQWIK R A L N K C 3 0 2 1 0 2 1 2 0 0 5 1 0 1 0 3 2 0 0 1 0 0 24 0 2476.2809 P43246 P43246 309 332 MSH2 DNA mismatch repair protein Msh2 yes yes 2;3 2.0951E-20 130.98 By MS/MS By MS/MS 2 0 2 1 1 4283600 0 1728900 2554700 832 813 870 3554;3555 2892;2893 2893 2 0 778530 577310 ALNMAIPGGPK NYFYLFDLKAFFTSKALNMAIPGGPKFEPL FTSKALNMAIPGGPKFEPLVRDINLQDEDW K A L P K F 2 0 1 0 0 0 0 2 0 1 1 1 1 0 2 0 0 0 0 0 0 0 11 0 1067.5798 Q6P2Q9 Q6P2Q9 268 278 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0012348 111.95 By MS/MS By MS/MS 1 0 2 1 1 41114000 0 19086000 22028000 833 1490 871 3556;3557 2894;2895;2896 2895 3 0 9329100 4746300 ALNRPPTYPTK NGIKTVIVNMVDVAKALNRPPTYPTKYFGC DVAKALNRPPTYPTKYFGCELGAQTQFDVK K A L T K Y 1 1 1 0 0 0 0 0 0 0 1 1 0 0 3 0 2 0 1 0 0 0 11 1 1256.6877 P55010 P55010 45 55 EIF5 Eukaryotic translation initiation factor 5 yes yes 3 0.070974 43.544 By MS/MS 4 0 1 1 5335800 0 0 5335800 834 933 872 3558 2897 2897 1 0 0 871520 ALNSIIDVYHK ______________________________ ELEKALNSIIDVYHKYSLIKGNFHAVYRDD K A L H K Y 1 0 1 1 0 0 0 0 1 2 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1271.6874 P05109 P05109 8 18 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 2;3 0.00010904 140.75 By MS/MS By MS/MS By MS/MS 6.39 3.06 3 2 2 1 1 3 4 2 5 5 19 2 7 258910000 187160000 7700900 64050000 835 424 873 3559;3560;3561;3562;3563;3564;3565;3566;3567;3568;3569;3570;3571;3572;3573;3574;3575;3576;3577;3578;3579;3580;3581;3582;3583;3584;3585;3586 2898;2899;2900;2901;2902;2903;2904;2905;2906;2907;2908;2909;2910;2911;2912;2913;2914;2915;2916;2917;2918 2907 20 230390000 24760000 63760000 ALNSMGQDLERPLELR IVDREVTPFFIIYCRALNSMGQDLERPLEL LNSMGQDLERPLELRVRVLDINDNPPVFSM R A L L R V 1 2 1 1 0 1 2 1 0 0 4 0 1 0 1 1 0 0 0 0 0 0 16 1 1840.9465 Q02413 Q02413 129 144 DSG1 Desmoglein-1 yes yes 2;3 6.5364E-06 139.66 By MS/MS By MS/MS 6.05 2.75 2 1 1 3 2 3 2 2 4 2 16 6 189840000 154980000 0 34861000 836 1146 874;875 3587;3588;3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601;3602;3603;3604;3605;3606;3607;3608 2919;2920;2921;2922;2923;2924;2925;2926;2927;2928;2929;2930;2931 2921 547 13 133160000 0 6378700 ALNTLSSPGQSSFSHGTR IPGKTILENSVKHSKALNTLSSPGQSSFSH TLSSPGQSSFSHGTRNNSAKENMEKEKPVK K A L T R N 1 1 1 0 0 1 0 2 1 0 2 0 0 1 1 5 2 0 0 0 0 0 18 0 1845.8969 Q8WWQ0 Q8WWQ0 1554 1571 PHIP PH-interacting protein yes yes 3 3.4808E-09 120.9 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 58114000 0 13717000 44398000 837 1690 876 3609;3610;3611;3612 2932;2933 2933 2 0 6704500 9568400 ALPANAILNQFQPAAGGYFVPAVPQAQGR AHLTNQYMQRVAGMRALPANAILNQFQPAA AGGYFVPAVPQAQGRPPYYTPNQLAQMRPN R A L G R P 7 1 2 0 0 4 0 3 0 1 2 0 0 2 4 0 0 0 1 2 0 0 29 0 2965.5563 Q13310 Q13310 391 419 PABPC4 Polyadenylate-binding protein 4 yes yes 3 0.0050889 33.548 By MS/MS 3 0 1 1 1306500 0 1306500 0 838 1237 877 3613 2934 2934 1 0 556980 0 ALPAPIEK DWLNGKEYKCKVSNKALPAPIEKTISKAKG KCKVSNKALPAPIEKTISKAKGQPREPQVY K A L E K T 2 0 0 0 0 0 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 8 0 837.496 P0DOX5;P01857;P01860 P0DOX5 329 336 IGHG1;IGHG3 Ig gamma-1 chain C region;Ig gamma-3 chain C region no no 2 0.022107 82.671 By MS/MS 8.5 1.12 1 1 1 1 4 209100000 209100000 0 0 839 381;383 878 3614;3615;3616;3617 2935;2936 2935 2 193450000 0 0 ALPAVQQNNLDEDLIR DAAELVALAQAVNARALPAVQQNNLDEDLI LPAVQQNNLDEDLIRKLAYVAAGDLAPINA R A L I R K 2 1 2 2 0 2 1 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 16 0 1807.9428 P22314 P22314 369 384 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 3.4552E-05 147.63 By MS/MS By MS/MS 2 0 2 1 1 13002000 0 2733900 10268000 840 630 879 3618;3619 2937;2938 2937 2 0 1231100 2320500 ALPEFFNGK AAWFDYNSVHAIERRALPEFFNGKNKSKTP HAIERRALPEFFNGKNKSKTPEIYLAYRNF R A L G K N 1 0 1 0 0 0 1 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 9 0 1021.5233 Q8TAQ2;Q92922 Q8TAQ2 445 453 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 2.8868E-11 132.29 By matching By MS/MS 2 0.707 1 2 1 1 3 10857000 833160 0 10024000 841 1653;1731 880 3620;3621;3622;3623 2939;2940 2939 2 1003900 0 2188000 ALPGMGTTIDVILINGR LAHCEELRAQVMEVKALPGMGTTIDVILIN PGMGTTIDVILINGRLKEGDTIIVPGVEGP K A L G R L 1 1 1 1 0 0 0 3 0 3 2 0 1 0 1 0 2 0 0 1 0 0 17 0 1739.9604 O60841 O60841 865 881 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 9.7727E-06 116.24 By MS/MS 1.5 0.5 1 1 2 13502000 0 0 13502000 842 236 881 3624;3625 2941;2942 2942 2 0 0 2985500 ALPGQLKPFETLLSQNQGGK LIYTNYEAGKDDYVKALPGQLKPFETLLSQ LKPFETLLSQNQGGKTFIVGDQISFADYNL K A L G K T 1 0 1 0 0 3 1 3 0 0 4 2 0 1 2 1 1 0 0 0 0 0 20 1 2125.1532 P09211 P09211 122 141 GSTP1 Glutathione S-transferase P yes yes 2;3 7.0973E-14 132.97 By MS/MS By MS/MS 7.6 0.8 3 1 1 1 4 141670000 0 24838000 116830000 843 482 882 3626;3627;3628;3629;3630 2943;2944;2945;2946;2947;2948;2949 2943 7 0 14262000 21570000 ALPLEAEVAPVK MTLPPETNVILTKDKALPLEAEVAPVKDMA KDKALPLEAEVAPVKDMAQLPETEIAPAKD K A L V K D 3 0 0 0 0 0 2 0 0 0 2 1 0 0 2 0 0 0 0 2 0 0 12 0 1235.7125 P27816 P27816 465 476 MAP4 Microtubule-associated protein 4 yes yes 2 0.066052 68.893 By MS/MS 1.5 0.5 1 1 2 22625000 0 0 22625000 844 683 883 3631;3632 2950 2950 1 0 0 5014400 ALPLEAEVAPVKDMAQLPETEIAPAK MTLPPETNVILTKDKALPLEAEVAPVKDMA KDMAQLPETEIAPAKDVAPSTVKEVGLLKD K A L A K D 6 0 0 1 0 1 4 0 0 1 3 2 1 0 4 0 1 0 0 2 0 0 26 1 2730.4514 P27816 P27816 465 490 MAP4 Microtubule-associated protein 4 yes yes 3 0.0307 27.299 By MS/MS 2 0 1 1 2415000 0 2415000 0 845 683 884 3633 2951 2951 1 0 1087500 0 ALPLIVGAQLIHADK ______________________________ ALPLIVGAQLIHADKLGEKVEDSTMPIRRT K A L D K L 3 0 0 1 0 1 0 1 1 2 3 1 0 0 1 0 0 0 0 1 0 0 15 0 1557.9243 Q5SSJ5 Q5SSJ5 15 29 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.003392 86.911 By MS/MS By MS/MS 3 0 2 1 1 16407000 0 4432700 11975000 846 1445 885 3634;3635 2952;2953;2954 2953 3 0 1889700 2322500 ALPMHIR EVDDEALEKFDKALKALPMHIRLSFNPTQL EKFDKALKALPMHIRLSFNPTQLEEQCHI_ K A L I R L 1 1 0 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 7 0 836.46908 CON__P02754 CON__P02754 142 148 yes yes 2 0.020245 102.12 By MS/MS By matching 5.5 4.03 1 1 1 1 3 1 57320000 54872000 2448400 0 + 847 43 886 3636;3637;3638;3639 2955;2956 2956 1 57200000 1102500 0 ALPNNTSSSPQPK KGEPHHELPPGSTKRALPNNTSSSPQPKKK KRALPNNTSSSPQPKKKPLDGEYFTLQIRG R A L P K K 1 0 2 0 0 1 0 0 0 0 1 1 0 0 3 3 1 0 0 0 0 0 13 0 1339.6732 P04637 P04637 307 319 TP53 Cellular tumor antigen p53 yes yes 2 0.00051886 120.68 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 6580300 0 2065600 4514800 848 416 887 3640;3641;3642 2957;2958;2959 2958 3 0 532440 676290 ALPSQGLSSSAVLEK SKNMSFLKVDKEYVKALPSQGLSSSAVLEK ALPSQGLSSSAVLEKLKEYSSMDAFWQEGR K A L E K L 2 0 0 0 0 1 1 1 0 0 3 1 0 0 1 4 0 0 0 1 0 0 15 0 1485.8039 O95470 O95470 115 129 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 2 2.9572E-07 165.66 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 1 4 58573000 0 18426000 40147000 849 328 888 3643;3644;3645;3646;3647 2960;2961;2962 2960 3 0 6114800 7297700 ALPTDWLIYDEMTR YKKIPPANGQAAAIKALPTDWLIYDEMTRA KALPTDWLIYDEMTRAHRIANIRCCSAVTP K A L T R A 1 1 0 2 0 0 1 0 0 1 2 0 1 0 1 0 2 1 1 0 0 0 14 0 1722.8287 Q9H6S0 Q9H6S0 1029 1042 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 2 0.044915 64.55 By matching By MS/MS 1.5 0.5 1 1 1 1 5314200 0 2076000 3238200 850 1989 889 3648;3649 2963 2963 0 0 1014700 731760 ALQAAIQQLAEAQPEATAK FCLTLHRYRDAASRRALQAAIQQLAEAQPE AIQQLAEAQPEATAKNLLHSLQSSGIGSKA R A L A K N 7 0 0 0 0 4 2 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 19 0 1951.0375 Q92616 Q92616 69 87 GCN1L1 Translational activator GCN1 yes yes 2 1.2794E-12 169.79 By MS/MS 1 0 1 1 2343500 0 2343500 0 851 1712 890 3650 2964 2964 1 0 1145500 0 ALQAEIAALR ______________________________ LAEVRALQAEIAALRRACEDPPAPWEEKSR R A L L R R 4 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1054.6135 Q6IPU0 Q6IPU0 10 19 CENPP Centromere protein P yes yes 2 1.9231E-29 196.77 By MS/MS 6 0 1 1 8640800 0 0 8640800 852 1478 891 3651 2965 2965 1 0 0 1292800 ALQALEELR SRVKAEAEAAREKQRALQALEELRLQAEEA AREKQRALQALEELRLQAEEAERRLRQAEV R A L L R L 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1671 1679 PLEC Plectin yes yes 2 4.9312E-05 148.04 By MS/MS 1 0 1 1 23336000 0 0 23336000 853 1348 892 3652 2966 2966 1 0 0 5028200 ALQALQNEPIPER EGKTRQAARHNAAMKALQALQNEPIPERSP MKALQALQNEPIPERSPQNGESGKDVDDDK K A L E R S 2 1 1 0 0 2 2 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 13 0 1477.7889 Q9NUL3 Q9NUL3 175 187 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 yes yes 2 4.7934E-25 203.94 By matching By MS/MS 4.33 0.471 2 1 1 2 10453000 2290500 8162200 0 854 2060 893 3653;3654;3655 2967 2967 1 1787000 2574600 0 ALQATVGNSYK DARDPAFKAANGSLRALQATVGNSYKCNAE GSLRALQATVGNSYKCNAEEHVRVTKAFSV R A L Y K C 2 0 1 0 0 1 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1150.5982 P11279 P11279 327 337 LAMP1 Lysosome-associated membrane glycoprotein 1 yes yes 2 0.00047404 119.75 By MS/MS By matching 6.5 3.1 1 1 1 1 2 5 1 24495000 23514000 0 980900 855 522 894 3656;3657;3658;3659;3660;3661 2968;2969;2970;2971 2971 3 29704000 0 2145300 ALQDEWDAVMLHSFTLR RPKPPSATSIPAILKALQDEWDAVMLHSFT QDEWDAVMLHSFTLRQQLQTTRQELSHALY K A L L R Q 2 1 0 2 0 1 1 0 1 0 3 0 1 1 0 1 1 1 0 1 0 0 17 0 2030.9884 Q9UMS4 Q9UMS4 77 93 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3 1.8714E-06 114.27 By MS/MS By MS/MS 3.14 1.12 1 1 1 4 2 5 163420000 0 14777000 148640000 856 2199 895;896 3662;3663;3664;3665;3666;3667;3668 2972;2973;2974;2975;2976;2977 2972 705 6 0 4903900 25151000 ALQDLENAASGDATVR QDPSAGPLLTEELIKALQDLENAASGDATV LQDLENAASGDATVRQKIASLPQEVQDVSL K A L V R Q 4 1 1 2 0 1 1 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 16 0 1629.7958 Q9NQG5 Q9NQG5 183 198 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 2.5398E-18 185.59 By matching By MS/MS 6 0 2 1 1 14594000 0 3229800 11364000 857 2033 897 3669;3670 2978 2978 1 0 1118100 1700100 ALQDQLVLVAAK IPAPIQAKTSPVDEKALQDQLVLVAAKLDT DEKALQDQLVLVAAKLDTEDKLRAAMVGML K A L A K L 3 0 0 1 0 2 0 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1267.75 P01019 P01019 83 94 AGT Angiotensinogen;Angiotensin-1;Angiotensin-2;Angiotensin-3;Angiotensin-4;Angiotensin 1-9;Angiotensin 1-7;Angiotensin 1-5;Angiotensin 1-4 yes yes 2 0.00048694 126.07 By MS/MS 9 0 1 1 3910700 3910700 0 0 858 369 898 3671 2979 2979 1 2195100 0 0 ALQDSAPDRPSPVER ASLNSQVWSALQMSKALQDSAPDRPSPVER ALQDSAPDRPSPVERIVSRDIARGYERIPI K A L E R I 2 2 0 2 0 1 1 0 0 0 1 0 0 0 3 2 0 0 0 1 0 0 15 1 1636.8169 Q9H9B1 Q9H9B1 994 1008 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes yes 3 6.4899E-05 130.24 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 33906000 0 12852000 21055000 859 1998 899 3672;3673;3674;3675;3676;3677 2980;2981;2982;2983 2982 4 0 5911700 4495200 ALQDVQIR SAAGVLIKLFCVHTKALQDVQIRFQPQLNP LFCVHTKALQDVQIRFQPQLNPDVVAPLPT K A L I R F 1 1 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 941.52943 Q6P2E9 Q6P2E9 515 522 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.043023 97.071 By MS/MS 2 0 1 1 2001100 0 2001100 0 860 1489 900 3678 2984 2984 0 0 901110 0 ALQEFDLALR WFQTKEERKKEKIAKALQEFDLALRGKKKR EKIAKALQEFDLALRGKKKRKKFMKDAKKK K A L L R G 2 1 0 1 0 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 10 0 1174.6346 Q96GQ7 Q96GQ7 667 676 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 1.4376E-05 152.34 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 51299000 0 27068000 24231000 861 1793 901 3679;3680;3681 2985;2986 2985 2 0 12163000 5475700 ALQEWLLK VRPPKAPEDFSQNWKALQEWLLKQKSQAPE DFSQNWKALQEWLLKQKSQAPEKPLVISQM K A L L K Q 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 1 0 0 0 0 8 0 999.57532 Q9GZR2 Q9GZR2 72 79 REXO4 RNA exonuclease 4 yes yes 2 0.024004 81.191 By matching By MS/MS By MS/MS 3.5 0.5 2 2 1 2 1 54581000 1631700 23609000 29340000 862 1951 902 3682;3683;3684;3685 2987;2988 2987 2 1882600 7917800 4792200 ALQFLEEVK HPRIITEGFEAAKEKALQFLEEVKVSREMD EAAKEKALQFLEEVKVSREMDRETLIDVAR K A L V K V 1 0 0 0 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1075.5914 P40227 P40227 130 138 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.0030405 101.43 By matching By MS/MS 3.67 0.471 1 2 2 1 16857000 8789100 8067900 0 863 783 903 3686;3687;3688 2989 2989 1 8433900 2677400 0 ALQFPPEGWLR IFICHANVIRYIVCRALQFPPEGWLRLSLN IVCRALQFPPEGWLRLSLNNGSITHLVIRP R A L L R L 1 1 0 0 0 1 1 1 0 0 2 0 0 1 2 0 0 1 0 0 0 0 11 0 1312.6928 Q96HS1 Q96HS1 241 251 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00032802 128.12 By matching By MS/MS 6 0 2 1 1 6193300 0 1321700 4871600 864 1796 904 3689;3690 2990 2990 1 0 457530 728840 ALQHMAAMSSAQIVSATAIHNK RDFHSKLKDQTAKDKALQHMAAMSSAQIVS MSSAQIVSATAIHNKLGLPGIPRPTFPGAP K A L N K L 6 0 1 0 0 2 0 0 2 2 1 1 2 0 0 3 1 0 0 1 0 0 22 0 2279.1515 P28347 P28347 118 139 TEAD1 Transcriptional enhancer factor TEF-1 yes yes 3 0.00011567 71.853 By MS/MS 4.5 0.5 1 1 2 21121000 0 0 21121000 865 692 905 3691;3692 2991 2991 1 0 0 3252300 ALQHMTDFAIQFNK HRQGHIYMEMNFTNKALQHMTDFAIQFNKN KALQHMTDFAIQFNKNSFGVIPSTPLAIHT K A L N K N 2 0 1 1 0 2 0 0 1 1 1 1 1 2 0 0 1 0 0 0 0 0 14 0 1662.8188 P63010 P63010 746 759 AP2B1 AP-2 complex subunit beta yes yes 2;3 4.9874E-17 185.99 By MS/MS By MS/MS 2 0 2 1 1 14458000 0 4788500 9669100 866 1057 906 3693;3694 2992;2993 2993 2 0 2156300 2185000 ALQLILDVLNPETSEDENDRVVVTDDSDERR ARSVFGHICSHLTPRALQLILDVLNPETSE ENDRVVVTDDSDERRLKGAEDKSEEGEDNR R A L R R L 1 3 2 6 0 1 4 0 0 1 4 0 0 0 1 2 2 0 0 4 0 0 31 2 3554.7336 Q9BQG0 Q9BQG0 685 715 MYBBP1A Myb-binding protein 1A yes yes 4 0.012915 29.028 By MS/MS 2 0 1 1 5893100 0 0 5893100 867 1885 907 3695 2994 2994 1 0 0 1331700 ALQLLDEVLHTMPIADPQPLD SIKETPCWIEIHLHRALQLLDEVLHTMPIA EVLHTMPIADPQPLD_______________ R A L L D - 2 0 0 3 0 2 1 0 1 1 5 0 1 0 3 0 1 0 0 1 0 0 21 0 2328.2035 Q13485 Q13485 532 552 SMAD4 Mothers against decapentaplegic homolog 4 yes yes 2 0.0069451 59.898 By MS/MS 3.5 0.5 1 1 2 2933800 0 0 2933800 868 1251 908 3696;3697 2995 2995 1 0 0 534950 ALQLLQMYYEGR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC GSRALQLLQMYYEGRFPCLEEKVLETPQEI R A L G R F 1 1 0 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 2 0 0 0 12 0 1483.7493 Q9H0A0 Q9H0A0 644 655 NAT10 N-acetyltransferase 10 yes yes 2 3.5683E-25 197.27 By MS/MS By MS/MS 2 0 2 1 1 29391000 0 3283900 26107000 869 1959 909 3698;3699 2996;2997 2997 2 0 1478800 5899700 ALQQEQEIEQR LKVEHTSRLKAAFVKALQQEQEIEQRLLQQ AFVKALQQEQEIEQRLLQQGTAPAQAKAEP K A L Q R L 1 1 0 0 0 4 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1370.679 Q86YP4;Q8WXI9 Q86YP4 465 475 GATAD2A;GATAD2B Transcriptional repressor p66-alpha;Transcriptional repressor p66-beta no no 2 4.9504E-10 172.23 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 17194000 0 2530000 14664000 870 1563;1697 910 3700;3701;3702 2998;2999 2998 2 0 875810 2300000 ALQQGLVGLELK GLVDLARGQLLPVSKALQQGLVGLELKEKL VSKALQQGLVGLELKEKLLAAERATTGYPD K A L L K E 1 0 0 0 0 2 1 2 0 0 4 1 0 0 0 0 0 0 0 1 0 0 12 0 1267.75 P58107 P58107 98 109 EPPK1 Epiplakin yes yes 2 0.0007113 121.5 By MS/MS 1 0 1 1 8457900 0 8457900 0 871 958 911 3703 3000 3000 1 0 4134100 0 ALQQNFLAMAAQLPMSIR KMALVADEQQRLMQRALQQNFLAMAAQLPM QNFLAMAAQLPMSIRINSQASESRQDSAVN R A L I R I 4 1 1 0 0 3 0 0 0 1 3 0 2 1 1 1 0 0 0 0 0 0 18 0 2002.0492 Q99856 Q99856 477 494 ARID3A AT-rich interactive domain-containing protein 3A yes yes 2;3 1.5556E-52 154.46 By MS/MS By MS/MS 3 0 4 2 2 8890500 0 1947000 6943500 872 1867 912 3704;3705;3706;3707 3001;3002;3003;3004 3004 4 0 830010 1346700 ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK GARGKGRTQLSLLPRALQRPSAAAPQAENG AAPAVAAPAATEAPKMSNADFAKLFLRK__ R A L P K M 14 1 1 0 0 2 2 1 0 0 1 1 0 0 6 1 1 0 0 1 0 0 32 1 2964.5417 Q15020 Q15020 919 950 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 3 1.784E-10 67.198 By MS/MS 2 0 1 1 3953400 0 3953400 0 873 1331 913 3708 3005 3005 1 0 1780300 0 ALQSQLEEEQLR KAALQELESEQGKGRALQSQLEEEQLRHLQ KGRALQSQLEEEQLRHLQRESQSAKALEEL R A L L R H 1 1 0 0 0 3 3 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 12 0 1442.7365 O95613 O95613 2664 2675 PCNT Pericentrin yes yes 2 0.0012012 115.91 By MS/MS 1.5 0.5 1 1 2 11706000 0 0 11706000 874 331 914 3709;3710 3006 3006 1 0 0 2584600 ALQSVGQIVGEVLK KELTKQYEKSENDLKALQSVGQIVGEVLKQ KALQSVGQIVGEVLKQLTEEKFIVKATNGP K A L L K Q 1 0 0 0 0 2 1 2 0 1 2 1 0 0 0 1 0 0 0 3 0 0 14 0 1439.8348 P62333 P62333 49 62 PSMC6 26S protease regulatory subunit 10B yes yes 2 0.0044321 89.403 By MS/MS 5 0 1 1 1952400 0 1952400 0 875 1025 915 3711 3007 3007 1 0 503260 0 ALSAIADLLTNEHER WTYGRYIRSALRQEKALSAIADLLTNEHER ALSAIADLLTNEHERVVKAASGALRNLAVD K A L E R V 3 1 1 1 0 0 2 0 1 1 3 0 0 0 0 1 1 0 0 0 0 0 15 0 1651.8529 O60716 O60716 711 725 CTNND1 Catenin delta-1 yes yes 2;3 3.376E-08 169.04 By MS/MS 2 0.707 1 2 1 4 37378000 0 0 37378000 876 230 916 3712;3713;3714;3715 3008;3009;3010 3008 3 0 0 8058900 ALSFLGFSAPTPIQALTLAPAIR VSAWKDLFVPRPVLRALSFLGFSAPTPIQA APTPIQALTLAPAIRDKLDILGAAETGSGK R A L I R D 5 1 0 0 0 1 0 1 0 2 4 0 0 2 3 2 2 0 0 0 0 0 23 0 2354.3362 Q9GZR7 Q9GZR7 206 228 DDX24 ATP-dependent RNA helicase DDX24 yes yes 2;3 4.9468E-22 159.04 By MS/MS By MS/MS 2 0.577 1 4 1 2 4 11998000 0 1306100 10691000 877 1952 917 3716;3717;3718;3719;3720;3721 3011;3012;3013;3014 3013 4 0 588170 2355800 ALSGTSPDDVQPGPSVGPPSK ESAIVSRPLNPFTAKALSGTSPDDVQPGPS PDDVQPGPSVGPPSKDKDKVLPSFWIPSLT K A L S K D 1 0 0 2 0 1 0 3 0 0 1 1 0 0 5 4 1 0 0 2 0 0 21 0 1991.98 Q9Y314 Q9Y314 133 153 NOSIP Nitric oxide synthase-interacting protein yes yes 2 1.7906E-14 153.24 By matching By MS/MS 6 0 2 1 1 12787000 0 1810300 10977000 878 2257 918 3722;3723 3015 3015 1 0 626660 1642300 ALSLLTLLNVYQK KFQKKLKELGRLNAKALSLLTLLNVYQKKH AKALSLLTLLNVYQKKHLVEILSYHNCDSQ K A L Q K K 1 0 1 0 0 1 0 0 0 0 5 1 0 0 0 1 1 0 1 1 0 0 13 0 1474.8759 Q9UK61 Q9UK61 1385 1397 FAM208A Protein FAM208A yes yes 2 0.0070448 94.692 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 5893800 0 866750 5027100 879 2175 919 3724;3725;3726 3016;3017 3017 2 0 404480 1083200 ALSMYEEAFQNTSDSDR IHLWYLLPPTASISRALSMYEEAFQNTSDS SMYEEAFQNTSDSDRYACSPLPSYLEGSGC R A L D R Y 2 1 1 2 0 1 2 0 0 0 1 0 1 1 0 3 1 0 1 0 0 0 17 0 1962.8265 P52948 P52948 1445 1461 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 2.8733E-130 272.97 By MS/MS 2 0 1 1 6678800 0 0 6678800 880 916 920 3727 3018 3018 1 0 0 1509300 ALSPSDSLEIFTK DQAKTQIGMTESLLKALSPSDSLEIFTKLE LKALSPSDSLEIFTKLEEIQQQILQQKHSM K A L T K L 1 0 0 1 0 0 1 0 0 1 2 1 0 1 1 3 1 0 0 0 0 0 13 0 1406.7293 Q8WXH0 Q8WXH0 1770 1782 SYNE2 Nesprin-2 yes yes 2 0.016905 80.979 By MS/MS 1 0 1 1 2180800 0 2180800 0 881 1696 921 3728 3019 3019 1 0 1065900 0 ALSSEGKPYVTK TENVKSSEEIESAFRALSSEGKPYVTKEEL AFRALSSEGKPYVTKEELYQNLTREQADYC R A L T K E 1 0 0 0 0 0 1 1 0 0 1 2 0 0 1 2 1 0 1 1 0 0 12 1 1278.682 Q13813 Q13813 2415 2426 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.054 48.659 By MS/MS By MS/MS 1 0 2 1 1 14748000 0 6514600 8233100 882 1268 922 3729;3730 3020;3021 3021 2 0 3184200 1774000 ALSSEGKPYVTKEELYQNLTR TENVKSSEEIESAFRALSSEGKPYVTKEEL KPYVTKEELYQNLTREQADYCVSHMKPYVD R A L T R E 1 1 1 0 0 1 3 1 0 0 3 2 0 0 1 2 2 0 2 1 0 0 21 2 2425.2489 Q13813 Q13813 2415 2435 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3;4 2.9665E-22 175.33 By MS/MS By MS/MS 1 0 2 1 1 21197000 0 10148000 11050000 883 1268 923 3731;3732 3022;3023 3023 2 0 4960100 2380800 ALSTDPAAPNLK KGISMSSSKLLLAAKALSTDPAAPNLKSQL AAKALSTDPAAPNLKSQLAAAARAVTDSIN K A L L K S 3 0 1 1 0 0 0 0 0 0 2 1 0 0 2 1 1 0 0 0 0 0 12 0 1196.6401 Q9Y490 Q9Y490 1321 1332 TLN1 Talin-1 yes yes 2 0.05121 64.711 By MS/MS 1 0 1 1 3899100 0 0 3899100 884 2284 924 3733 3024 3024 0 0 0 840110 ALSTMDLQK GVTKNMAQVTKALDKALSTMDLQKVSSVMD TKALDKALSTMDLQKVSSVMDRFEQQVQNL K A L Q K V 1 0 0 1 0 1 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 9 0 1005.5165 Q9HD42 Q9HD42 99 107 CHMP1A Charged multivesicular body protein 1a yes yes 2 0.016447 84.568 By MS/MS By matching 6.67 0.471 1 2 2 1 58933000 0 33498000 25435000 885 2016 925 3734;3735;3736 3025 3025 1 0 18790000 4513200 ALTALGLAVPR DSLRELLRLPLRYPRALTALGLAVPRGVLL RYPRALTALGLAVPRGVLLAGPPGVGKTQL R A L P R G 3 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 11 0 1080.6655 Q9BVQ7 Q9BVQ7 225 235 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 0.00032723 128.69 By matching By MS/MS By MS/MS 3.17 2.73 2 1 2 1 1 4 1 15718000 606920 8662500 6449000 886 1918 926 3737;3738;3739;3740;3741;3742 3026;3027;3028 3026 3 606920 4420500 1250800 ALTHIDHSLSR VQGKKGEDVLGSVRRALTHIDHSLSRQNCP SVRRALTHIDHSLSRQNCPFLAGETESLAD R A L S R Q 1 1 0 1 0 0 0 0 2 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1248.6575 P56192 P56192 120 130 MARS Methionine--tRNA ligase, cytoplasmic yes yes 3 0.0056874 78.342 By matching By MS/MS By MS/MS 2 0 3 1 1 1 8248200 1823400 1625700 4799000 887 949 927 3743;3744;3745 3029;3030 3030 1 2197000 732090 1084500 ALTLIAGSPLK LERLKNEITRLTTVKALTLIAGSPLKIDLR TTVKALTLIAGSPLKIDLRPVLGEGVPILA K A L L K I 2 0 0 0 0 0 0 1 0 1 3 1 0 0 1 1 1 0 0 0 0 0 11 0 1082.6699 Q86VP6 Q86VP6 631 641 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.0041178 103.55 By MS/MS 2 0 1 1 1095400 0 1095400 0 888 1554 928 3746 3031 3031 1 0 493250 0 ALTLPGSSENEYIMK EIAPFVEILLTNLFKALTLPGSSENEYIMK ALTLPGSSENEYIMKAIMRSFSLLQEAIIP K A L M K A 1 0 1 0 0 0 2 1 0 1 2 1 1 0 1 2 1 0 1 0 0 0 15 0 1651.8127 P55060 P55060 560 574 CSE1L Exportin-2 yes yes 2 0.019605 68.536 By MS/MS 2 0 1 1 2657600 0 2657600 0 889 935 929 3747 3032 3032 1 0 1196800 0 ALTLQDLDNIWAAQAGK VEKLEKILRFVIKEKALTLQDLDNIWAAQA TLQDLDNIWAAQAGKHEAIVKNVHDLLAKL K A L G K H 4 0 1 2 0 2 0 1 0 1 3 1 0 0 0 0 1 1 0 0 0 0 17 0 1826.9527 Q93008;O00507 Q93008 425 441 USP9X;USP9Y Probable ubiquitin carboxyl-terminal hydrolase FAF-X;Probable ubiquitin carboxyl-terminal hydrolase FAF-Y yes no 2 2.9439E-13 101.71 By MS/MS 2 1 1 1 2 971820 0 0 971820 890 1737 930 3748;3749 3033;3034 3033 2 0 0 188490 ALTSEIALLQSR STLNSGKKSLETEHKALTSEIALLQSRLKT EHKALTSEIALLQSRLKTEGSDLCDRVSEM K A L S R L 2 1 0 0 0 1 1 0 0 1 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1300.7351 P04843 P04843 525 536 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 4.0932E-05 148.32 By matching By MS/MS By MS/MS 3 0 3 1 1 1 40901000 2383200 11289000 27229000 891 419 931 3750;3751;3752 3035;3036 3035 2 2749700 4812500 5281100 ALTSELANAR TTEAEKNERVQKHLKALTSELANARDESKK QKHLKALTSELANARDESKKTANDMIHAEN K A L A R D 3 1 1 0 0 0 1 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1044.5564 P26038 P26038 524 533 MSN Moesin yes yes 2 8.7196E-07 153.71 By MS/MS 3 0 1 1 42061000 0 42061000 0 892 664 932 3753 3037 3037 1 0 17931000 0 ALTSFLPAPTQLSQDQLEAEEK ______________________________ APTQLSQDQLEAEEKARSQRSRQTSLVSSR M A L E K A 3 0 0 1 0 3 3 0 0 0 4 1 0 1 2 2 2 0 0 0 0 0 22 0 2415.2169 Q13573 Q13573 2 23 SNW1 SNW domain-containing protein 1 yes yes 2;3 4.2673E-21 155.09 By MS/MS By MS/MS 3 0 3 1 2 23098000 0 647790 22450000 893 1259 933 3754;3755;3756 3038;3039;3040 3039 3 0 276150 4354300 ALTVPELTQQMFDAK PGFAPLTSRGSQQYRALTVPELTQQMFDAK ALTVPELTQQMFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 1 1 1 0 2 0 0 1 0 0 15 0 1690.86 P68371;P04350;Q13509 P68371 283 297 TUBB4B;TUBB4A;TUBB3 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2;3 5.7247E-30 189.13 By MS/MS By MS/MS By MS/MS 4.48 1.81 2 3 2 7 7 5 2 1 1 13 15 980580000 15922000 605350000 359310000 894 1079;414;1254 934;935 3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780;3781;3782;3783;3784;3785 3041;3042;3043;3044;3045;3046;3047;3048;3049;3050;3051;3052;3053;3054;3055;3056;3057;3058;3059;3060;3061;3062;3063;3064;3065;3066;3067;3068;3069;3070;3071;3072;3073;3074;3075;3076;3077;3078;3079;3080;3081;3082;3083;3084;3085;3086;3087 3061 140 46 12422000 178320000 59223000 ALTVPELTQQMFDAR PGFAPLTSRGSQQYRALTVPELTQQMFDAR ALTVPELTQQMFDARNMMAACDPRHGRYLT R A L A R N 2 1 0 1 0 2 1 0 0 0 2 0 1 1 1 0 2 0 0 1 0 0 15 0 1718.8662 Q9BUF5 Q9BUF5 283 297 TUBB6 Tubulin beta-6 chain yes yes 2 8.3089E-05 155.48 By MS/MS By MS/MS 3.5 1.5 1 1 2 2 2 4 65251000 0 22722000 42530000 895 1905 936 3786;3787;3788;3789;3790;3791 3088;3089;3090 3089 3 0 6771800 7113600 ALTVPELTQQMFDSK PGFAPLTSRGSQQYRALTVPELTQQMFDSK ALTVPELTQQMFDSKNMMAACDPRHGRYLT R A L S K N 1 0 0 1 0 2 1 0 0 0 2 1 1 1 1 1 2 0 0 1 0 0 15 0 1706.8549 Q13885;Q9BVA1 Q13885 283 297 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain yes no 2 3.0858E-25 202.16 By MS/MS 4.5 0.5 1 1 2 28981000 0 28981000 0 896 1274 937 3792;3793 3091;3092 3092 2 0 8267500 0 ALTVPELTQQVFDAK PGFAPLTSRGSQQYRALTVPELTQQVFDAK ALTVPELTQQVFDAKNMMAACDPRHGRYLT R A L A K N 2 0 0 1 0 2 1 0 0 0 2 1 0 1 1 0 2 0 0 2 0 0 15 0 1658.8879 P07437 P07437 283 297 TUBB Tubulin beta chain yes yes 2;3 1.2429E-12 182.33 By MS/MS By MS/MS By MS/MS 4.81 2.24 2 2 4 5 4 4 3 1 1 1 1 12 14 1678400000 21662000 545390000 1111400000 897 462 938 3794;3795;3796;3797;3798;3799;3800;3801;3802;3803;3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818;3819;3820 3093;3094;3095;3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109;3110;3111;3112;3113;3114;3115;3116;3117;3118;3119;3120;3121;3122;3123;3124;3125;3126;3127;3128;3129;3130;3131;3132;3133;3134;3135;3136;3137;3138;3139;3140;3141 3104 49 16900000 165420000 174390000 ALVADSHPESER EDYAETVHQLSKTSRALVADSHPESERISM TSRALVADSHPESERISMRQSKVDKLYAGL R A L E R I 2 1 0 1 0 0 2 0 1 0 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1309.6262 Q01082 Q01082 1657 1668 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 0.00069997 121.73 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 26737000 0 14698000 12039000 898 1128 939 3821;3822;3823;3824;3825 3142;3143;3144;3145 3144 4 0 7119500 2593900 ALVALGAVDTALYAVGGK RPGDTVKLNLKTESRALVALGAVDTALYAV ALGAVDTALYAVGGKSHKPLDMVKVFEAMN R A L G K S 5 0 0 1 0 0 0 3 0 0 3 1 0 0 0 0 1 0 1 3 0 0 18 0 1687.9509 CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 596 613 yes no 2 1.1766E-08 149.38 By MS/MS By MS/MS By matching 3 0 3 1 1 1 4926700 1651100 982520 2293100 + 899 25 940 3826;3827;3828 3146;3147 3146 2 1905000 418850 444750 ALVATPGKK KAVTTPGKKGATPGKALVATPGKKGAAIPA GATPGKALVATPGKKGAAIPAKGAKNGKNA K A L K K G 2 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 9 1 883.5491 P19338 P19338 117 125 NCL Nucleolin yes yes 2 0.012335 93.374 By MS/MS By matching 6.67 0.471 1 2 2 1 3688600 0 2714100 974470 900 604 941 3829;3830;3831 3148 3148 1 0 1355400 172910 ALVAVLLSR HPHRLTGNKVQQYHRALVAVLLSRTWHVRR VQQYHRALVAVLLSRTWHVRRQAQQTVRKL R A L S R T 2 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 2 0 0 9 0 940.60695 Q92616 Q92616 568 576 GCN1L1 Translational activator GCN1 yes yes 2 0.068307 67.169 By MS/MS 1 0 1 1 1492100 0 0 1492100 901 1712 942 3832 3149 3149 1 0 0 321500 ALVAYYQK GHVAQIYAIRQSISKALVAYYQKYVDEASK IRQSISKALVAYYQKYVDEASKKEIKDILI K A L Q K Y 2 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 954.51747 P62249 P62249 91 98 RPS16 40S ribosomal protein S16 yes yes 2 0.0012755 118.06 By MS/MS 8 0 1 1 40812000 0 40812000 0 902 1010 943 3833 3150 3150 1 0 18568000 0 ALVDGPCTQVR AGKLVAIVDVIDQNRALVDGPCTQVRRQAM DQNRALVDGPCTQVRRQAMPFKCMQLTDFI R A L V R R 1 1 0 1 1 1 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1214.6078 P50914 P50914 36 46 RPL14 60S ribosomal protein L14 yes yes 2 0.0087484 93.649 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 138140000 0 32344000 105790000 903 884 944 3834;3835;3836;3837 3151;3152 3151 2 0 16712000 17714000 ALVDILSEVSK ALAQYQNHLQEQPRKALVDILSEVSKATLQ QPRKALVDILSEVSKATLQEILPEVLKADL K A L S K A 1 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 11 0 1172.6653 Q9BQG0 Q9BQG0 180 190 MYBBP1A Myb-binding protein 1A yes yes 2 0.0040577 103.7 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 34271000 0 14050000 20220000 904 1885 945 3838;3839;3840 3153;3154 3153 2 0 6327100 4498300 ALVEFESNPEETR PESPESLTSVSRTRRALVEFESNPEETREP RRALVEFESNPEETREPGSPPSVQRAGLGS R A L T R E 1 1 1 0 0 0 4 0 0 0 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1519.7155 Q9H6F5 Q9H6F5 31 43 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 5.6963E-12 131.82 By matching By MS/MS 3.5 0.5 1 1 1 1 10851000 0 6328800 4521800 905 1986 946 3841;3842 3155 3155 0 0 2698000 738560 ALVEFESNPEETREPGSPPSVQR PESPESLTSVSRTRRALVEFESNPEETREP PEETREPGSPPSVQRAGLGSPERPPKTSPG R A L Q R A 1 2 1 0 0 1 5 1 0 0 1 0 0 1 4 3 1 0 0 2 0 0 23 1 2554.23 Q9H6F5 Q9H6F5 31 53 CCDC86 Coiled-coil domain-containing protein 86 yes yes 3 5.175E-20 128.55 By MS/MS 4 0 1 1 27775000 0 0 27775000 906 1986 947 3843 3156 3156 1 0 0 4536600 ALVELLR AYLRRIKMELQQKDRALVELLREKVGLFAE MELQQKDRALVELLREKVGLFAEMTHFQAE R A L L R E 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 812.51199 Q92974 Q92974 603 609 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes yes 2 0.014165 113.08 By MS/MS 2 0 1 1 2134100 0 2134100 0 907 1735 948 3844 3157 3157 1 0 961030 0 ALVIQESER AVGLPLGPGREALEKALVIQESERRKKLRF REALEKALVIQESERRKKLRFHPRQLYLSV K A L E R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 Q96KQ7 Q96KQ7 635 643 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes yes 2 0.043929 73.26 By MS/MS 2 0 1 1 3064200 0 3064200 0 908 1805 949 3845 3158 3158 1 0 1379900 0 ALVLANPEVSLWR RLRLLEEAQLQDLEKALVLANPEVSLWRKQ EKALVLANPEVSLWRKQKELQYLQGHLVSS K A L W R K 2 1 1 0 0 0 1 0 0 0 3 0 0 0 1 1 0 1 0 2 0 0 13 0 1466.8245 Q9NU22 Q9NU22 234 246 MDN1 Midasin yes yes 2 0.00034468 127.76 By MS/MS 1.5 0.5 1 1 2 3107700 0 3107700 0 909 2056 950 3846;3847 3159 3159 1 0 1507200 0 ALVQNDTLLQVK FDQQNGRTYLKYSIKALVQNDTLLQVKGTG SIKALVQNDTLLQVKGTGANGSFKLNRKKL K A L V K G 1 0 1 1 0 2 0 0 0 0 3 1 0 0 0 0 1 0 0 2 0 0 12 0 1340.7664 Q92522 Q92522 95 106 H1FX Histone H1x yes yes 2 5.665E-06 160.59 By MS/MS By MS/MS By MS/MS 5.47 2.25 1 1 1 2 2 2 3 2 1 1 9 5 623160000 8142900 171050000 443970000 910 1706 951 3848;3849;3850;3851;3852;3853;3854;3855;3856;3857;3858;3859;3860;3861;3862 3160;3161;3162;3163;3164;3165;3166;3167;3168;3169;3170;3171;3172 3165 13 17550000 68250000 69422000 ALVQQMEQLR EFRRRVEPYGENFNKALVQQMEQLRQKLGP ENFNKALVQQMEQLRQKLGPHAGDVEGHLS K A L L R Q 1 1 0 0 0 3 1 0 0 0 2 0 1 0 0 0 0 0 0 1 0 0 10 0 1214.6441 P06727 P06727 317 326 APOA4 Apolipoprotein A-IV yes yes 2 0.0036174 101.54 By MS/MS By matching 10 0 2 1 1 1835200 935190 0 899990 911 446 952 3863;3864 3173 3173 1 1703700 0 1968400 ALVSEWKEPQAK QITSASVRLVSQEPKALVSEWKEPQAKNIS EPKALVSEWKEPQAKNISVASCNSSQVVVA K A L A K N 2 0 0 0 0 1 2 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 12 1 1384.7351 Q16531 Q16531 485 496 DDB1 DNA damage-binding protein 1 yes yes 3 0.006688 78.692 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 37289000 0 9155800 28134000 912 1387 953 3865;3866;3867;3868 3174;3175;3176 3176 3 0 4123000 6078600 ALVSHNGSLINVGSLLQR PGKSTKPGAAPTEHKALVSHNGSLINVGSL SHNGSLINVGSLLQRAEQQDSGRLYLENKI K A L Q R A 1 1 2 0 0 1 0 2 1 1 4 0 0 0 0 3 0 0 0 2 0 0 18 0 1877.0483 Q8N163 Q8N163 801 818 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 3 0.012733 46.494 By MS/MS 2 0 1 1 5759200 0 0 5759200 913 1598 954 3869 3177 3177 1 0 0 1301500 ALVTGYFMQVAHLER STDFTSRDYYINIRKALVTGYFMQVAHLER ALVTGYFMQVAHLERTGHYLTVKDNQVVQL K A L E R T 2 1 0 0 0 1 1 1 1 0 2 0 1 1 0 0 1 0 1 2 0 0 15 0 1733.8923 O43143 O43143 692 706 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 5.3929E-05 133.05 By MS/MS By MS/MS 3 1.31 3 3 1 2 5 55519000 0 6003300 49516000 914 186 955 3870;3871;3872;3873;3874;3875;3876 3178;3179;3180;3181;3182;3183 3178 6 0 2664600 10120000 ALVTLSSGDMR VVEEEKVDISEDGMKALVTLSSGDMRRALN DGMKALVTLSSGDMRRALNILQSTNMAFGK K A L M R R 1 1 0 1 0 0 0 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 11 0 1148.586 P40937 P40937 204 214 RFC5 Replication factor C subunit 5 yes yes 2 9.8039E-05 141.2 By matching By MS/MS 6 0.707 1 2 1 1 3 40954000 0 7814600 33140000 915 787 956 3877;3878;3879;3880 3184;3185 3185 2 0 2705100 4913500 ALVTVHVR APFARDIPRVTALNRALVTVHVRDLDEGPE RVTALNRALVTVHVRDLDEGPECTPAAQYV R A L V R D 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 3 0 0 8 0 893.54469 Q14574 Q14574 456 463 DSC3 Desmocollin-3 yes yes 2 0.014457 88.643 By MS/MS 9.5 0.5 1 1 2 5661600 5661600 0 0 916 1306 957 3881;3882 3186 3186 1 6447900 0 0 ALVVEMSR RAIEALHGHELRPGRALVVEMSRPRPLNTW HELRPGRALVVEMSRPRPLNTWKIFVGNVS R A L S R P 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 2 0 0 8 0 903.48479 Q96PK6 Q96PK6 65 72 RBM14 RNA-binding protein 14 yes yes 2 8.2782E-06 154.01 By MS/MS 3 0 1 1 50949000 0 0 50949000 917 1818 958 3883 3187 3187 1 0 0 9881700 ALWFQGR TREDAMAMVDHCLKKALWFQGRCVKVDLSE MVDHCLKKALWFQGRCVKVDLSEKYKKLVL K A L G R C 1 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 7 0 876.46062 P43243 P43243 556 562 MATR3 Matrin-3 yes yes 2 0.021952 99.511 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 90076000 0 34045000 56030000 918 812 959 3884;3885;3886;3887;3888;3889 3188;3189;3190 3189 3 0 15275000 12457000 ALYALQDIVSR FHELQLLNTDYLRQRALYALQDIVSRHISE LRQRALYALQDIVSRHISESHEKGENVKSV R A L S R H 2 1 0 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 1 1 0 0 11 0 1247.6874 Q15154 Q15154 1422 1432 PCM1 Pericentriolar material 1 protein yes yes 2 0.00031727 132.38 By MS/MS 1 0 1 1 13393000 0 0 13393000 919 1349 960 3890 3191 3191 1 0 0 2885600 ALYALQEEMLQLSQQLDASEQHK EQERLRKEEGQIRLRALYALQEEMLQLSQQ MLQLSQQLDASEQHKALLKVDLAAFQTRGN R A L H K A 3 0 0 1 0 5 3 0 1 0 5 1 1 0 0 2 0 0 1 0 0 0 23 0 2672.3116 Q53GS7 Q53GS7 247 269 GLE1 Nucleoporin GLE1 yes yes 3 8.113E-21 132.45 By MS/MS 3 0 1 1 11255000 0 0 11255000 920 1425 961 3891 3192 3192 1 0 0 2183000 ALYDAELSQMQTHISDTSVVLSMDNNR QAKADTLTDEINFLRALYDAELSQMQTHIS HISDTSVVLSMDNNRNLDLDSIIAEVKAQY R A L N R N 2 1 2 3 0 2 1 0 1 1 3 0 2 0 0 4 2 0 1 2 0 0 27 0 3037.4121 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 300 326 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 2.3242E-40 161.84 By MS/MS 3 0.816 1 1 1 3 31773000 0 0 31773000 + 921 68;47;37 962 3892;3893;3894 3193 3193 1 0 0 6106200 ALYDTFSAFGNILSCK GNIFIKNLDKSIDNKALYDTFSAFGNILSC LYDTFSAFGNILSCKVVCDENGSKGYGFVH K A L C K V 2 0 1 1 1 0 0 1 0 1 2 1 0 2 0 2 1 0 1 0 0 0 16 0 1805.8658 P11940;Q13310 P11940 114 129 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.0016363 91.961 By MS/MS 3.5 0.5 1 1 2 2299100 0 2299100 0 922 530;1237 963 3895;3896 3194 3194 1 0 851490 0 ALYEQEIR LLVLRQKHSEPSRFRALYEQEIRDLRLAAE SEPSRFRALYEQEIRDLRLAAEDATNEKQA R A L I R D 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1020.524 P07196 P07196 137 144 NEFL Neurofilament light polypeptide yes yes 2 1.8105E-06 124.37 By MS/MS 3 0 1 1 0 0 0 0 923 453 964 3897 3195 3195 1 0 0 0 ALYEQEIRDLR LLVLRQKHSEPSRFRALYEQEIRDLRLAAE SRFRALYEQEIRDLRLAAEDATNEKQALQG R A L L R L 1 2 0 1 0 1 2 0 0 1 2 0 0 0 0 0 0 0 1 0 0 0 11 1 1404.7361 P07196 P07196 137 147 NEFL Neurofilament light polypeptide yes yes 3 0.060653 47.302 By MS/MS 3 0 1 1 5863000 0 5863000 0 924 453 965 3898 3196 3196 1 0 2499400 0 ALYESELADAR SEKEEVTTREVSGIKALYESELADARRVLD SGIKALYESELADARRVLDETARERARLQI K A L A R R 3 1 0 1 0 0 2 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 11 0 1236.5986 Q03252 Q03252 94 104 LMNB2 Lamin-B2 yes yes 2 8.2526E-06 151.97 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 125370000 0 13384000 111990000 925 1156 966 3899;3900;3901;3902 3197;3198;3199;3200 3200 4 0 5705700 19954000 ALYETELADAR TEREEVRGRELTGLKALYETELADARRALD TGLKALYETELADARRALDDTARERAKLQI K A L A R R 3 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 11 0 1250.6143 P20700 P20700 80 90 LMNB1 Lamin-B1 yes yes 2 2.2316E-05 149.57 By MS/MS By MS/MS By MS/MS 3.3 1.62 1 2 4 1 1 1 1 1 8 719050000 27492000 71196000 620360000 926 619 967 3903;3904;3905;3906;3907;3908;3909;3910;3911;3912 3201;3202;3203;3204;3205;3206;3207;3208;3209 3205 9 31719000 30351000 115150000 ALYETELADARR TEREEVRGRELTGLKALYETELADARRALD GLKALYETELADARRALDDTARERAKLQIE K A L R R A 3 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 12 1 1406.7154 P20700 P20700 80 91 LMNB1 Lamin-B1 yes yes 2;3 6.9721E-26 205.59 By MS/MS By MS/MS 2.25 0.829 2 2 4 5 3 94035000 0 19482000 74553000 927 619 968 3913;3914;3915;3916;3917;3918;3919;3920 3210;3211;3212;3213;3214;3215 3211 6 0 8599700 14672000 ALYYLQIHPQELR VASCNSSQVVVAVGRALYYLQIHPQELRQI GRALYYLQIHPQELRQISHTEMEHEVACLD R A L L R Q 1 1 0 0 0 2 1 0 1 1 3 0 0 0 1 0 0 0 2 0 0 0 13 0 1642.8831 Q16531 Q16531 515 527 DDB1 DNA damage-binding protein 1 yes yes 2;3 4.4943E-05 158.79 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 29557000 0 14141000 15416000 928 1387 969 3921;3922;3923 3216;3217;3218 3218 3 0 6367800 3433200 AMAAEAEASR RVEIKDVKLPVQLQRAMAAEAEASREARAK VQLQRAMAAEAEASREARAKVIAAEGEMNA R A M S R E 5 1 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 10 0 1005.4549 P27105 P27105 206 215 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.0014824 108.98 By matching By MS/MS 6.5 0.5 1 1 1 1 3696300 0 696640 2999700 929 675 970 3924;3925 3219 3219 1 0 241150 532270 AMAATLGAGTPPRPQAR PVPGTNSTEQASVPRAMAATLGAGTPPRPQ AATLGAGTPPRPQARSIAGVYVEASGQAQS R A M A R S 5 2 0 0 0 1 0 2 0 0 1 0 1 0 3 0 2 0 0 0 0 0 17 1 1664.8781 P58107 P58107 25 41 EPPK1 Epiplakin yes yes 3 0.00039552 88.73 By MS/MS By matching 1.5 0.5 1 1 1 1 9452500 0 6779700 2672800 930 958 971 3926;3927 3220 3220 1 0 3313800 604000 AMADALLER PMFREYSLQVLKNARAMADALLERGYSLVS VLKNARAMADALLERGYSLVSGGTDNHLVL R A M E R G 3 1 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 988.50117 P34897 P34897 360 368 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.00026225 139.97 By MS/MS By MS/MS 3.83 1.07 1 1 2 2 3 3 98463000 0 21021000 77442000 931 734 972 3928;3929;3930;3931;3932;3933 3221;3222;3223;3224 3223 4 0 6892800 12587000 AMADPEVQQIMSDPAMR AQYNRHDSPEDVKRRAMADPEVQQIMSDPA ADPEVQQIMSDPAMRLILEQMQKDPQALSE R A M M R L 3 1 0 2 0 2 1 0 0 1 0 0 3 0 2 1 0 0 0 1 0 0 17 0 1888.8481 P31948 P31948 489 505 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 3.5726E-05 105.65 By MS/MS 3 0 1 1 4964900 0 0 4964900 932 726 973 3934 3225 3225 1 0 0 962960 AMAPLHPHPAGMR PALKLTKTIQVPQQKAMAPLHPHPAGMRIN QKAMAPLHPHPAGMRINVVNNHQAKQNLYD K A M M R I 3 1 0 0 0 0 0 1 2 0 1 0 2 0 3 0 0 0 0 0 0 0 13 0 1384.6856 Q9BY77 Q9BY77 156 168 POLDIP3 Polymerase delta-interacting protein 3 yes yes 3 0.071448 36 By MS/MS By matching 5.5 0.5 1 1 1 1 2985100 0 1172400 1812700 933 1933 974 3935;3936 3226 3226 1 0 302200 271200 AMDLAQAGSTVESK FTTYFLPLANTLKSKAMDLAQAGSTVESKI KAMDLAQAGSTVESKIYDTLQWQMWTLLPG K A M S K I 3 0 0 1 0 1 1 1 0 0 1 1 1 0 0 2 1 0 0 1 0 0 14 0 1406.6711 Q5JTH9 Q5JTH9 600 613 RRP12 RRP12-like protein yes yes 2 2.9187E-07 168.3 By MS/MS 1.5 0.5 1 1 2 15637000 0 0 15637000 934 1438 975 3937;3938 3227 3227 1 0 0 3450100 AMDSDWFAENYMGR EFHEAFSGQILANFKAMDSDWFAENYMGRK KAMDSDWFAENYMGRKTKVGLPPLEKFNNW K A M G R K 2 1 1 2 0 0 1 1 0 0 0 0 2 1 0 1 0 1 1 0 0 0 14 0 1691.6708 P55084 P55084 392 405 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 2 0.016191 76.332 By MS/MS 4.5 0.5 1 1 2 5250000 0 0 5250000 935 938 976 3939;3940 3228 3228 1 0 0 788990 AMEAEAAGLR QEETRAKLALGSRVRAMEAEAAGLREQLEE GSRVRAMEAEAAGLREQLEEEAAARERAGR R A M L R E 4 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1017.4913 Q7Z406 Q7Z406 1357 1366 MYH14 Myosin-14 yes yes 2 0.037077 74.486 By MS/MS 1 0 1 1 0 0 0 0 936 1531 977 3941 3229 3229 1 0 0 0 AMEGIFMKPSELLK EVHGMAQPSQNNYWKAMEGIFMKPSELLKA KAMEGIFMKPSELLKAEAHHAEL_______ K A M L K A 1 0 0 0 0 0 2 1 0 1 2 2 2 1 1 1 0 0 0 0 0 0 14 1 1592.8306 Q99470 Q99470 190 203 SDF2 Stromal cell-derived factor 2 yes yes 3 0.043471 47.606 By MS/MS By MS/MS 7 0 2 1 1 12368000 0 1544500 10824000 937 1844 978 3942;3943 3230;3231 3230 2 0 886860 1920600 AMFEQMR ______________________________ ______________________________ M A M M R A 1 1 0 0 0 1 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 7 0 911.39934 Q9UBQ5 Q9UBQ5 2 8 EIF3K Eukaryotic translation initiation factor 3 subunit K yes yes 2 0.009486 103.29 By MS/MS By matching 7 0 2 1 1 5791200 0 2628800 3162400 938 2133 979 3944;3945 3232 3232 1 0 1509500 561140 AMFLQPDLDSLVDFSTNNQK FLSPPALQGYVAWLRAMFLQPDLDSLVDFS PDLDSLVDFSTNNQKKAQDSSLHMPERAVF R A M Q K K 1 0 2 3 0 2 0 0 0 0 3 1 1 2 1 2 1 0 0 1 0 0 20 0 2282.0889 Q9BQG0 Q9BQG0 412 431 MYBBP1A Myb-binding protein 1A yes yes 2;3 5.1723E-14 148.68 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 26825000 0 9719400 17105000 939 1885 980 3946;3947;3948 3233;3234;3235 3235 3 0 4376800 3685600 AMFLQPDLDSLVDFSTNNQKK FLSPPALQGYVAWLRAMFLQPDLDSLVDFS DLDSLVDFSTNNQKKAQDSSLHMPERAVFR R A M K K A 1 0 2 3 0 2 0 0 0 0 3 2 1 2 1 2 1 0 0 1 0 0 21 1 2410.1839 Q9BQG0 Q9BQG0 412 432 MYBBP1A Myb-binding protein 1A yes yes 3 6.3101E-06 81.723 By MS/MS 2 0 1 1 2553500 0 2553500 0 940 1885 981 3949 3236 3236 1 0 1149900 0 AMGIMNSFLNDIFER KVLKRVHPDTGIWCKAMGIMNSFLNDIFER AMGIMNSFLNDIFERIAGEASRLAHYNKRS K A M E R I 1 1 2 1 0 0 1 1 0 2 1 0 2 2 0 1 0 0 0 0 0 0 15 0 1756.8277 Q6DRA6;Q6DN03 Q6DRA6 59 73 HIST2H2BD;HIST2H2BC Putative histone H2B type 2-D;Putative histone H2B type 2-C yes no 2;3 0.00022072 137.98 By MS/MS By MS/MS 7.08 1.63 1 1 4 7 8 3 11 13 946510000 0 109700000 836810000 941 1472 982;983;984 3950;3951;3952;3953;3954;3955;3956;3957;3958;3959;3960;3961;3962;3963;3964;3965;3966;3967;3968;3969;3970;3971;3972;3973 3237;3238;3239;3240;3241;3242;3243;3244;3245;3246;3247;3248;3249;3250;3251;3252;3253;3254;3255 3255 637;638 19 0 47974000 130140000 AMGIMNSFVNDIFER KVLKQVHPDTGISSKAMGIMNSFVNDIFER AMGIMNSFVNDIFERIAGEASRLAHYNKRS K A M E R I 1 1 2 1 0 0 1 1 0 2 0 0 2 2 0 1 0 0 0 1 0 0 15 0 1742.812 P06899;Q16778;P33778;P23527;P57053;O60814;Q8N257 P06899 59 73 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 2;3 8.2861E-149 283.52 By MS/MS By MS/MS By MS/MS 6.31 2.52 8 7 8 9 7 11 15 42 12 5 11 36 77 23080000000 525300000 1160500000 21394000000 942 451;644;953;1601 985;986;987 3974;3975;3976;3977;3978;3979;3980;3981;3982;3983;3984;3985;3986;3987;3988;3989;3990;3991;3992;3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006;4007;4008;4009;4010;4011;4012;4013;4014;4015;4016;4017;4018;4019;4020;4021;4022;4023;4024;4025;4026;4027;4028;4029;4030;4031;4032;4033;4034;4035;4036;4037;4038;4039;4040;4041;4042;4043;4044;4045;4046;4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057;4058;4059;4060;4061;4062;4063;4064;4065;4066;4067;4068;4069;4070;4071;4072;4073;4074;4075;4076;4077;4078;4079;4080;4081;4082;4083;4084;4085;4086;4087;4088;4089;4090;4091;4092;4093;4094;4095;4096;4097 3256;3257;3258;3259;3260;3261;3262;3263;3264;3265;3266;3267;3268;3269;3270;3271;3272;3273;3274;3275;3276;3277;3278;3279;3280;3281;3282;3283;3284;3285;3286;3287;3288;3289;3290;3291;3292;3293;3294;3295;3296;3297;3298;3299;3300;3301;3302;3303;3304;3305;3306;3307;3308;3309;3310;3311;3312;3313;3314;3315;3316;3317;3318;3319;3320;3321;3322;3323;3324;3325;3326;3327;3328;3329;3330;3331;3332;3333;3334;3335;3336;3337;3338;3339;3340;3341;3342;3343;3344;3345;3346;3347;3348;3349;3350;3351;3352;3353;3354;3355;3356;3357;3358;3359;3360;3361;3362;3363;3364;3365;3366;3367;3368;3369;3370;3371;3372;3373;3374;3375;3376;3377;3378;3379;3380;3381;3382;3383;3384;3385;3386;3387;3388;3389;3390;3391;3392;3393;3394;3395;3396;3397;3398;3399;3400;3401;3402;3403;3404;3405;3406;3407;3408;3409;3410;3411;3412;3413 3381 170;171 156 444690000 572990000 3478300000 AMGPLVLTEVLFNEK SDKEIVAEAERLDVKAMGPLVLTEVLFNEK AMGPLVLTEVLFNEKIREQIKKYRRHFLRF K A M E K I 1 0 1 0 0 0 2 1 0 0 3 1 1 1 1 0 1 0 0 2 0 0 15 0 1659.8906 P55010 P55010 274 288 EIF5 Eukaryotic translation initiation factor 5 yes yes 2 0.00051083 109.6 By matching By MS/MS 3.5 0.5 1 1 1 1 11017000 0 122990 10894000 943 933 988 4098;4099 3414 3414 1 0 52429 1779300 AMGQGLPDEEQEK SPCWASPQLLRIIFKAMGQGLPDEEQEKLL FKAMGQGLPDEEQEKLLRICSIYTQSGENS K A M E K L 1 0 0 1 0 2 3 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 13 0 1430.6348 Q9Y4W2 Q9Y4W2 487 499 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.007185 94.297 By MS/MS 2.5 0.5 1 1 2 9424200 0 0 9424200 944 2289 989 4100;4101 3415 3415 1 0 0 1869500 AMIGHTDSAEAAPGTIR VAMVWEGYNVVRASRAMIGHTDSAEAAPGT IGHTDSAEAAPGTIRGDFSVHISRNVIHAS R A M I R G 4 1 0 1 0 0 1 2 1 2 0 0 1 0 1 1 2 0 0 0 0 0 17 0 1696.8203 O00746 O00746 122 138 NME4 Nucleoside diphosphate kinase, mitochondrial yes yes 3 0.0032516 63.462 By MS/MS By MS/MS 8 0 2 1 1 19680000 0 10925000 8754600 945 133 990 4102;4103 3416;3417 3416 2 0 4970600 1342200 AMLDQLMGTSR ______________________________ AQMRAMLDQLMGTSRDGDTTRQRIKFSDDR R A M S R D 1 1 0 1 0 1 0 1 0 0 2 0 2 0 0 1 1 0 0 0 0 0 11 0 1221.5846 Q9Y383 Q9Y383 9 19 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes yes 2 9.1156E-08 162.49 By MS/MS 5 0 1 1 15239000 0 15239000 0 946 2259 991 4104 3418 3418 1 0 3928000 0 AMLSANIR YFGSLSVEDSLECLRAMLSANIRQNLQICV DSLECLRAMLSANIRQNLQICVQVASKYHE R A M I R Q 2 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 874.46947 Q00610 Q00610 669 676 CLTC Clathrin heavy chain 1 yes yes 2 0.022473 82.386 By MS/MS 2 0 1 1 7699700 0 7699700 0 947 1125 992 4105 3419 3419 1 0 3467300 0 AMLSGPGQFAENETNEVNFR FIVKREHALTSGTIKAMLSGPGQFAENETN PGQFAENETNEVNFREIPSHVLSKVCMYFT K A M F R E 2 1 3 0 0 1 3 2 0 0 1 0 1 2 1 1 1 0 0 1 0 0 20 0 2210.0062 Q15369 Q15369 44 63 TCEB1 Transcription elongation factor B polypeptide 1 yes yes 2 6.2589E-102 251.24 By MS/MS 9 0 1 1 13501000 0 0 13501000 948 1358 993 4106 3420 3420 1 0 0 4312900 AMNGESLDGR FITFTNPEHASVAMRAMNGESLDGRQIRVD SVAMRAMNGESLDGRQIRVDHAGKSARGTR R A M G R Q 1 1 1 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 0 0 0 0 10 0 1048.4608 P98179 P98179 66 75 RBM3 RNA-binding protein 3 yes yes 2 0.0037004 101.25 By MS/MS 8 0 1 1 5146500 0 5146500 0 949 1118 994 4107 3421 3421 1 0 2341500 0 AMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTR VPPPGFEHITPMQYKAMQAAGQIPATALLP VTPTPVPVVGSQMTRQARRLYVGNIPFGIT K A M T R Q 6 1 0 1 0 3 0 3 0 1 3 0 3 0 6 1 6 0 0 4 0 0 38 0 3787.9675 P26368 P26368 109 146 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 3;4;5 3.2283E-80 154.35 By MS/MS By MS/MS 3.68 0.926 3 6 13 2 1 18 7 371340000 0 189160000 182180000 950 668 995;996;997 4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125;4126;4127;4128;4129;4130;4131;4132 3422;3423;3424;3425;3426;3427;3428;3429;3430;3431;3432;3433;3434;3435;3436;3437;3438;3439;3440;3441;3442;3443;3444 3427 295;296;297 23 0 63221000 30485000 AMQADISQAAQILSSDPSR ASALQIATHTAFVAKAMQADISQAAQILSS DISQAAQILSSDPSRTHQALGILSKTYDAA K A M S R T 4 1 0 2 0 3 0 0 0 2 1 0 1 0 1 4 0 0 0 0 0 0 19 0 1987.9633 P42166 P42166 592 610 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 1.679E-261 329.11 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 22175000 0 4245100 17930000 951 798 998 4133;4134;4135 3445;3446;3447 3447 3 0 1667100 3477500 AMTGVEQWPYR ASEMAVAHALTEKSKAMTGVEQWPYRAVAQ EKSKAMTGVEQWPYRAVAQALEVIPRTLIQ K A M Y R A 1 1 0 0 0 1 1 1 0 0 0 0 1 0 1 0 1 1 1 1 0 0 11 0 1336.6234 P49368 P49368 428 438 CCT3 T-complex protein 1 subunit gamma yes yes 2 0.0013398 110.87 By MS/MS 3 0 1 1 3753600 0 0 3753600 952 854 999 4136 3448 3448 1 0 0 728020 AMTILLEEAK EAGSKKVAKQDAAMKAMTILLEEAKAKDSG DAAMKAMTILLEEAKAKDSGKSEESSHYST K A M A K A 2 0 0 0 0 0 2 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1117.6053 P55265 P55265 565 574 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.0018853 107.57 By MS/MS 2.5 0.5 1 1 2 14010000 0 14010000 0 953 941 1000 4137;4138 3449 3449 1 0 6264600 0 AMTVDREFPEMNLESVTPMTLTTLEGGNLEAK SDEEIQDVSGTWYLKAMTVDREFPEMNLES PMTLTTLEGGNLEAKVTMLISGRCQEVKAV K A M A K V 2 1 2 1 0 0 5 2 0 0 4 1 3 1 2 1 5 0 0 2 0 0 32 1 3523.6885 P31025 P31025 39 70 LCN1 Lipocalin-1 yes yes 3 2.443E-27 110.44 By MS/MS 6.5 2.06 2 2 2 2 8 30348000 30348000 0 0 954 716 1001;1002 4139;4140;4141;4142;4143;4144;4145;4146 3450;3451;3452;3453;3454;3455 3450 312;313 6 23592000 0 0 AMVEYEIDLQK QDLIKMIFDVESMKKAMVEYEIDLQKMPLG SMKKAMVEYEIDLQKMPLGKLSKRQIQAAY K A M Q K M 1 0 0 1 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 1 0 0 11 0 1337.6537 P09874 P09874 685 695 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00032851 131.62 By MS/MS By MS/MS 2.67 1.15 1 4 2 1 1 3 6 269450000 0 36600000 232850000 955 492 1003;1004 4147;4148;4149;4150;4151;4152;4153;4154;4155 3456;3457;3458;3459;3460;3461 3460 202 6 0 16567000 49014000 AMVNKDDIQK RGDEVMVELAENGKKAMVNKDDIQKMNPPK ENGKKAMVNKDDIQKMNPPKFSKVEDMAEL K A M Q K M 1 0 1 2 0 1 0 0 0 1 0 2 1 0 0 0 0 0 0 1 0 0 10 1 1160.586 P35580 P35580 69 78 MYH10 Myosin-10 yes yes 2 0.0029297 125.48 By MS/MS 1 0 1 1 4614800 0 4614800 0 956 753 1005 4156 3462 3462 1 0 2255600 0 AMVQQLDTLR DFRRTVGPYGETFNKAMVQQLDTLRQKLGP ETFNKAMVQQLDTLRQKLGPLAGDVEDHLS K A M L R Q 1 1 0 1 0 2 0 0 0 0 2 0 1 0 0 0 1 0 0 1 0 0 10 0 1173.6176 CON__Q32PJ2 CON__Q32PJ2 317 326 yes yes 2 7.6197E-38 186.3 By MS/MS By MS/MS By MS/MS 7.2 1.51 2 3 5 2 1 2 8 1 6 127280000 77482000 2923700 46870000 + 957 81 1006;1007 4157;4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171 3463;3464;3465;3466;3467;3468;3469;3470;3471;3472;3473;3474 3470 60 12 103970000 1678800 17221000 AMVSEFLK ______________________________ ______________________________ M A M L K Q 1 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 8 0 923.47864 P04083 P04083 2 9 ANXA1 Annexin A1 yes yes 1;2 0.008367 75.854 By MS/MS By matching 4.33 2.36 1 2 2 1 16218000 2337100 0 13881000 958 410 1008 4172;4173;4174 3475;3476 3476 1 2757800 0 2076700 AMYPGTFYFQFK ______________________________ PMKAMYPGTFYFQFKNLWEANDRNETWLCF K A M F K N 1 0 0 0 0 1 0 1 0 0 0 1 1 3 1 0 1 0 2 0 0 0 12 0 1498.6955 Q9NRW3 Q9NRW3 11 22 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 2 0.0048406 103.55 By matching By MS/MS 7 0 3 1 2 17066000 0 480640 16586000 959 2046 1009;1010 4175;4176;4177 3477;3478 3478 695 2 0 275980 2943000 ANCIDSTASAEAVFASEVK HTFLRNGGHFVISIKANCIDSTASAEAVFA DSTASAEAVFASEVKKMQQENMKPQEQLTL K A N V K K 5 0 1 1 1 0 2 0 0 1 0 1 0 1 0 3 1 0 0 2 0 0 19 0 1968.9099 P22087 P22087 266 284 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2 7.658E-09 121.24 By matching By MS/MS 5 0.816 1 1 1 2 1 17317000 4943000 0 12374000 960 627 1011 4178;4179;4180 3479 3479 1 3917300 0 1851300 ANDDIIVNWVNR RYTLNVLEDLGDGQKANDDIIVNWVNRTLS GQKANDDIIVNWVNRTLSEAGKSTSIQSFK K A N N R T 1 1 3 2 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 2 0 0 12 0 1427.7157 P13797 P13797 519 530 PLS3 Plastin-3 yes yes 2 1.7199E-16 135.63 By MS/MS 3 0 1 1 0 0 0 0 961 551 1012 4181 3480 3480 1 0 0 0 ANDLTHSLSSYLK IELEELNLPDSCFLKANDLTHSLSSYLKEI LKANDLTHSLSSYLKEICPKWVKLRKNHSE K A N L K E 1 0 1 1 0 0 0 0 1 0 3 1 0 0 0 3 1 0 1 0 0 0 13 0 1447.7307 Q9BQ75 Q9BQ75 125 137 CMSS1 Protein CMSS1 yes yes 3 0.016888 61.212 By matching By MS/MS 6.33 0.471 2 1 1 2 21197000 0 4291500 16906000 962 1881 1013 4182;4183;4184 3481 3481 1 0 1485600 2641900 ANDYANAVLQALSNVPPLR GTTYLPGIVGLNNIKANDYANAVLQALSNV ANAVLQALSNVPPLRNYFLEEDNYKNIKRP K A N L R N 4 1 3 1 0 1 0 0 0 0 3 0 0 0 2 1 0 0 1 2 0 0 19 0 2025.0643 Q53GS9 Q53GS9 232 250 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2;3;4 1.1752E-79 239.61 By MS/MS By MS/MS 3.33 0.471 4 2 3 3 42413000 0 12390000 30023000 963 1426 1014 4185;4186;4187;4188;4189;4190 3482;3483;3484;3485;3486 3486 5 0 4174100 5823000 ANENSNIQVLSER IGQTITISRVEGRRRANENSNIQVLSERSA RRANENSNIQVLSERSATEVDNNFSKPPPF R A N E R S 1 1 3 0 0 1 2 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 13 0 1472.7219 Q6UN15 Q6UN15 332 344 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 2 8.7295E-34 208.46 By MS/MS 3 0 1 1 13207000 0 0 13207000 964 1503 1015 4191 3487 3487 1 0 0 2561600 ANEVEQMIR ELQKLEDDAKDNQQKANEVEQMIRDLEASI KDNQQKANEVEQMIRDLEASIARYKEEYAV K A N I R D 1 1 1 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1088.5284 Q14204 Q14204 3430 3438 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00072693 131.06 By matching By MS/MS 1 0 2 1 1 6650900 2436300 4214600 0 965 1292 1016 4192;4193 3488 3488 1 2436300 2060000 0 ANFENLAK TVPVEAVTSKTSNIRANFENLAKEKEQEDR SKTSNIRANFENLAKEKEQEDRRKAEAERA R A N A K E 2 0 2 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 905.46068 Q14247 Q14247 352 359 CTTN Src substrate cortactin yes yes 2 0.048649 79.469 By MS/MS 3 0 1 1 0 0 0 0 966 1295 1017 4194 3489 3489 1 0 0 0 ANGMELDGR VYFENVDDAKEAKERANGMELDGRRIRVDF KEAKERANGMELDGRRIRVDFSITKRPHTP R A N G R R 1 1 1 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 961.42873 Q13595;P62995 P62995 179 187 TRA2A;TRA2B Transformer-2 protein homolog alpha;Transformer-2 protein homolog beta no no 2 0.016181 84.743 By matching By MS/MS 6 0.707 1 2 1 1 3 31362000 0 2461700 28900000 967 1055;1260 1018 4195;4196;4197;4198 3490;3491 3490 2 0 852160 4343500 ANGMELDGRR VYFENVDDAKEAKERANGMELDGRRIRVDF EAKERANGMELDGRRIRVDFSITKRPHTPT R A N R R I 1 2 1 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 1 1117.5298 Q13595;P62995 P62995 179 188 TRA2A;TRA2B Transformer-2 protein homolog alpha;Transformer-2 protein homolog beta no no 2 0.023689 86.67 By MS/MS 5.5 0.5 1 1 2 8514300 0 8514300 0 968 1055;1260 1019 4199;4200 3492 3492 1 0 2900500 0 ANGTTVHVGIHPSK RKKYVIYIERVQREKANGTTVHVGIHPSKV KANGTTVHVGIHPSKVVITRLKLDKDRKKI K A N S K V 1 0 1 0 0 0 0 2 2 1 0 1 0 0 1 1 2 0 0 2 0 0 14 0 1416.7474 P61254;Q9UNX3 P61254 90 103 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2;3 1.7743E-36 157.22 By MS/MS By MS/MS 7 0 3 1 2 55649000 0 16763000 38887000 969 989 1020 4201;4202;4203 3493;3494;3495 3495 3 0 9625200 6900200 ANILGLAAGQR RVEGITGKQMESFLKANILGLAAGQRCGAS SFLKANILGLAAGQRCGAS___________ K A N Q R C 3 1 1 0 0 1 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1082.6196 Q14807 Q14807 651 661 KIF22 Kinesin-like protein KIF22 yes yes 2 0.0034966 105.14 By MS/MS By MS/MS 8.75 1.09 1 2 1 1 3 6462100 0 1524800 4937300 970 1320 1021 4204;4205;4206;4207 3496;3497 3497 2 0 1221000 4523200 ANLEESFPR ______________________________ ______________________________ M A N P R G 1 1 1 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1061.5142 Q14690 Q14690 2 10 PDCD11 Protein RRP5 homolog yes yes 2 0.00035194 131.06 By MS/MS 1 0 1 1 7782400 0 7782400 0 971 1314 1022 4208 3498 3498 1 0 3803900 0 ANLGVFSVFAPR LMPSNQQHKTDEKGRANLGVFSVFAPRGEH KGRANLGVFSVFAPRGEHTLQVKAIYNKSI R A N P R G 2 1 1 0 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 12 0 1276.6928 A6NHR9 A6NHR9 1325 1336 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00012483 137.95 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 20997000 0 8681400 12316000 972 15 1023 4209;4210;4211;4212 3499;3500;3501;3502 3499 4 0 4133900 2653600 ANLLNNEAHAITMQVTK FTAYATISYLKIGPKANLLNNEAHAITMQV LLNNEAHAITMQVTKSTQNSFRAESSQTCH K A N T K S 3 0 3 0 0 1 1 0 1 1 2 1 1 0 0 0 2 0 0 1 0 0 17 0 1866.9622 P46063 P46063 576 592 RECQL ATP-dependent DNA helicase Q1 yes yes 2;3 4.6601E-37 214.18 By MS/MS By MS/MS 3 0.577 1 4 1 2 4 104860000 0 24016000 80848000 973 823 1024 4213;4214;4215;4216;4217;4218 3503;3504;3505;3506 3506 4 0 10238000 15675000 ANLPQSFQVDTSK KVKCSGPGLSPGMVRANLPQSFQVDTSKAG VRANLPQSFQVDTSKAGVAPLQVKVQGPKG R A N S K A 1 0 1 1 0 2 0 0 0 0 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1433.7151 P21333 P21333 1465 1477 FLNA Filamin-A yes yes 2 2.6483E-11 178.08 By MS/MS 1 0 1 1 28101000 0 28101000 0 974 623 1025 4219 3507 3507 1 0 13735000 0 ANLQIDQINTDLNLER EEQGNTELINDRLKKANLQIDQINTDLNLE NLQIDQINTDLNLERSHAQKNENARQQLER K A N E R S 1 1 3 2 0 2 1 0 0 2 3 0 0 0 0 0 1 0 0 0 0 0 16 0 1868.9592 P35579 P35579 1755 1770 MYH9 Myosin-9 yes yes 2;3 1.3157E-108 262.24 By MS/MS By MS/MS 2 1.15 3 1 1 1 5 1 183590000 0 156200000 27384000 975 752 1026 4220;4221;4222;4223;4224;4225 3508;3509;3510;3511;3512 3512 5 0 75599000 5900300 ANNYNEAVYLVR EFVEAMIRQLKESLKANNYNEAVYLVRFLS SLKANNYNEAVYLVRFLSDLVNCHVIAAPS K A N V R F 2 1 3 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 12 0 1424.7048 Q09161 Q09161 118 129 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.01119 92.445 By MS/MS 9 0 1 1 2019800 0 2019800 0 976 1189 1027 4226 3513 3513 1 0 1617400 0 ANPALYVLR GSKPLIQQAMAKIMKANPALYVLRERIRKG MAKIMKANPALYVLRERIRKGLQLYSSEPT K A N L R E 2 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1015.5815 Q6P2Q9 Q6P2Q9 1736 1744 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 4.0526E-05 148.98 By MS/MS 1 0 1 1 30584000 0 30584000 0 977 1490 1028 4227 3514 3514 1 0 14949000 0 ANPHNYDAWFDYLR IIVSKRRFQYEEEVKANPHNYDAWFDYLRL KANPHNYDAWFDYLRLVESDAEAEAVREVY K A N L R L 2 1 2 2 0 0 0 0 1 0 1 0 0 1 1 0 0 1 2 0 0 0 14 0 1780.7958 Q9BZJ0 Q9BZJ0 486 499 CRNKL1 Crooked neck-like protein 1 yes yes 3 0.037201 46.408 By MS/MS 3 0 1 1 1904200 0 1904200 0 978 1944 1029 4228 3515 3515 1 0 811750 0 ANPQVGVAFPHIK DLDMVAIVRYAYDKRANPQVGVAFPHIKHN KRANPQVGVAFPHIKHNYECLVYVQLPFME R A N I K H 2 0 1 0 0 1 0 1 1 1 0 1 0 1 2 0 0 0 0 2 0 0 13 0 1376.7565 P13010 P13010 401 413 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.0012726 111.31 By matching By MS/MS By MS/MS 4.2 2.71 2 5 1 1 1 1 4 5 149320000 4939100 54163000 90223000 979 542 1030 4229;4230;4231;4232;4233;4234;4235;4236;4237;4238 3516;3517;3518;3519;3520;3521;3522;3523;3524;3525 3518 9 5698600 26095000 19235000 ANPTQLNTVEFLWDPAK LDIDIPMSVGIIDPRANPTQLNTVEFLWDP PTQLNTVEFLWDPAKRTSVFIQVHCISTEF R A N A K R 2 0 2 1 0 1 1 0 0 0 2 1 0 1 2 0 2 1 0 1 0 0 17 0 1942.9789 Q12800 Q12800 165 181 TFCP2 Alpha-globin transcription factor CP2 yes yes 2 8.8285E-06 120.47 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 33921000 0 6672800 27248000 980 1200 1031 4239;4240;4241;4242 3526;3527;3528 3527 3 0 2214500 4947900 ANRFEYLLK QEPDPTYEEKMQTDRANRFEYLLKQTELFA KMQTDRANRFEYLLKQTELFAHFIQPAAQK R A N L K Q 1 1 1 0 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 9 1 1152.6291 O60264 O60264 89 97 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.066503 90.601 By MS/MS 1.5 0.5 1 1 2 24968000 0 0 24968000 981 223 1032 4243;4244 3529 3529 1 0 0 5538100 ANSFTVSSVAAPSWLHR EPEKLGQALTEVYAKANSFTVSSVAAPSWL SFTVSSVAAPSWLHRFIIGKKGQNLAKITQ K A N H R F 3 1 1 0 0 0 0 0 1 0 1 0 0 1 1 4 1 1 0 2 0 0 17 0 1828.922 Q00341 Q00341 361 377 HDLBP Vigilin yes yes 3 0.0013671 71.558 By matching By MS/MS 1.5 0.5 1 1 1 1 7661900 0 2236900 5425100 982 1122 1033 4245;4246 3530 3530 1 0 1093300 1226000 ANSHFATAFYQHLADSK KIPGATNRRVWELSKANSHFATAFYQHLAD SHFATAFYQHLADSKNNNDNIFLSPLSIST K A N S K N 4 0 1 1 0 1 0 0 2 0 1 1 0 2 0 2 1 0 1 0 0 0 17 0 1906.8962 CON__P41361 CON__P41361 87 103 yes yes 2;3;4 1.0606E-05 101.23 By MS/MS By MS/MS By MS/MS 3.22 0.629 1 5 3 2 1 6 68607000 18380000 3210700 47017000 + 983 67 1034 4247;4248;4249;4250;4251;4252;4253;4254;4255 3531;3532;3533;3534;3535 3531 5 17055000 1368700 8949700 ANSNLVLQADR ______________________________ YEYKANSNLVLQADRSLIDRTRRDEPTGEV K A N D R S 2 1 2 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1199.6258 O75643 O75643 15 25 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 1.0614E-35 210.44 By matching By MS/MS By MS/MS 1 0 3 1 1 1 85360000 3947000 41955000 39458000 984 277 1035 4256;4257;4258 3536;3537 3537 2 3947000 20507000 8501800 ANVAVVSGAPLQGQLVAR LSQYMGLSLNEEEIRANVAVVSGAPLQGQL AVVSGAPLQGQLVARPSSINYMVAPVTGND R A N A R P 4 1 1 0 0 2 0 2 0 0 2 0 0 0 1 1 0 0 0 4 0 0 18 0 1748.9897 O00560 O00560 68 85 SDCBP Syntenin-1 yes yes 2;3 2.2077E-16 176.97 By MS/MS By MS/MS By MS/MS 6 0 5 1 2 2 40960000 3094300 6712700 31153000 985 128 1036 4259;4260;4261;4262;4263 3538;3539;3540;3541 3539 4 4120200 2323700 4660800 ANVELDHATLVR WSTKDFLQREHRSMRANVELDHATLVRFSP SMRANVELDHATLVRFSPDCRAFIVWLANG R A N V R F 2 1 1 1 0 0 1 0 1 0 2 0 0 0 0 0 1 0 0 2 0 0 12 0 1336.7099 Q9Y4P3 Q9Y4P3 132 143 TBL2 Transducin beta-like protein 2 yes yes 3 0.031588 54.343 By MS/MS 5 0 1 1 8285900 0 8285900 0 986 2288 1037 4264 3542 3542 1 0 2135900 0 ANVNEILDFFHGYR SGRVTPIKIMNLPFKANVNEILDFFHGYRI KANVNEILDFFHGYRIIPDSVSIQYNEQGL K A N Y R I 1 1 2 1 0 0 1 1 1 1 1 0 0 2 0 0 0 0 1 1 0 0 14 0 1693.8213 Q8IXT5 Q8IXT5 936 949 RBM12B RNA-binding protein 12B yes yes 3 9.9535E-05 138.89 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 21018000 0 3887600 17130000 987 1587 1038 4265;4266;4267 3543;3544;3545 3545 3 0 1750600 3843800 ANYAVDAYFR IAFTEWIEPPKRERKANYAVDAYFREALRV KRERKANYAVDAYFREALRVSEPKAPKAPR K A N F R E 3 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 10 0 1188.5564 O60264;P28370 O60264 740 749 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 4.9523E-05 149.91 By MS/MS By matching By MS/MS 2 0.632 1 3 1 1 1 3 45136000 3095000 8891100 33150000 988 223;693 1039 4268;4269;4270;4271;4272 3546;3547;3548 3548 3 3729100 4003800 7357500 APAEVQITAEQLLR AGKQRIPKVAKVKNKAPAEVQITAEQLLRE KAPAEVQITAEQLLREAKERELELLPPPPQ K A P L R E 3 1 0 0 0 2 2 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 14 0 1537.8464 Q9BZJ0 Q9BZJ0 183 196 CRNKL1 Crooked neck-like protein 1 yes yes 2 0.02497 78.763 By MS/MS 3 0 1 1 8414600 0 8414600 0 989 1944 1040 4273 3549 3549 0 0 3587100 0 APAMFNIR KVVDPFSKKDWYDVKAPAMFNIRNIGKTLV KDWYDVKAPAMFNIRNIGKTLVTRTQGTKI K A P I R N 2 1 1 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 8 0 918.47456 P61247 P61247 35 42 RPS3A 40S ribosomal protein S3a yes yes 1;2 4.001E-10 166.13 By MS/MS By MS/MS 6.28 2.16 1 1 2 1 6 2 2 1 2 8 10 519450000 0 205800000 313650000 990 988 1041;1042 4274;4275;4276;4277;4278;4279;4280;4281;4282;4283;4284;4285;4286;4287;4288;4289;4290;4291 3550;3551;3552;3553;3554;3555;3556;3557;3558;3559;3560;3561;3562;3563;3564 3559 471 13 0 89734000 57082000 APAMQPAEIQFAQR ______________________________ MAPAMQPAEIQFAQRLASSEKGIRDRAVKK M A P Q R L 4 1 0 0 0 3 1 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 14 0 1556.7769 Q14684 Q14684 2 15 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 3.5517E-05 161.17 By matching By MS/MS By MS/MS 2.6 0.49 2 3 1 3 1 30569000 2512300 10387000 17670000 991 1313 1043;1044 4292;4293;4294;4295;4296 3565;3566;3567 3566 3 2898700 4615800 3427100 APAVAVAPTPVQPPIIVAPVATVPAMPQEK DPAPNVTVLLREPVRAPAVAVAPTPVQPPI IVAPVATVPAMPQEKLASSPKDKKKKEKKV R A P E K L 7 0 0 0 0 2 1 0 0 2 0 1 1 0 8 0 2 0 0 6 0 0 30 0 2958.6616 Q9P2E9 Q9P2E9 102 131 RRBP1 Ribosome-binding protein 1 yes yes 3 2.3393E-06 55.413 By MS/MS 4.5 1.71 1 1 1 1 1 1 6 10383000 0 10383000 0 992 2122 1045 4297;4298;4299;4300;4301;4302 3568;3569;3570 3568 3 0 3949300 0 APDELHYTYLDTFGRPVIVAYK GAKNIEIDSPYEISRAPDELHYTYLDTFGR TYLDTFGRPVIVAYKKNLVEQHIQDIVVHY R A P Y K K 2 1 0 2 0 0 1 1 1 1 2 1 0 1 2 0 2 0 3 2 0 0 22 1 2567.306 P04843 P04843 392 413 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 4 0.019589 35.174 By MS/MS 3 0 1 1 24127000 0 0 24127000 993 419 1046 4303 3571 3571 1 0 0 4679500 APDFVFYAPR SFNDKKFVIKPIDKKAPDFVFYAPRLRINK PIDKKAPDFVFYAPRLRINKRILALCMGNH K A P P R L 2 1 0 1 0 0 0 0 0 0 0 0 0 2 2 0 0 0 1 1 0 0 10 0 1181.5869 P15311;P26038;P35241 P26038 264 273 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2 0.00037112 136.8 By MS/MS By matching 2.6 1.02 1 1 2 1 4 1 77797000 0 45677000 32120000 994 664;569;742 1047 4304;4305;4306;4307;4308 3572;3573;3574;3575 3573 3 0 18544000 6229800 APEDFSQNWK KKPASGPGAVVRPPKAPEDFSQNWKALQEW VRPPKAPEDFSQNWKALQEWLLKQKSQAPE K A P W K A 1 0 1 1 0 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 10 0 1220.5462 Q9GZR2 Q9GZR2 62 71 REXO4 RNA exonuclease 4 yes yes 2 0.00019622 121.05 By MS/MS 4 0 1 1 19514000 0 0 19514000 995 1951 1048 4309 3576 3576 1 0 0 3187300 APELLLGAK PLKAYTPVVVTLWYRAPELLLGAKEYSTAV VTLWYRAPELLLGAKEYSTAVDMWSVGCIF R A P A K E 2 0 0 0 0 0 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 9 0 910.54877 P21127;Q9UQ88 P21127 605 613 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 0.058323 69.105 By MS/MS 3 0.816 1 1 1 3 17674000 0 0 17674000 996 620 1049 4310;4311;4312 3577 3577 1 0 0 3588300 APEPTPQQVAQQQ LQMSERNILSRLANRAPEPTPQQVAQQQ__ NRAPEPTPQQVAQQQ_______________ R A P Q Q - 2 0 0 0 0 5 1 0 0 0 0 0 0 0 3 0 1 0 0 1 0 0 13 0 1420.6947 Q14839 Q14839 1900 1912 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00020644 148.5 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 84776000 35260000 27300000 22216000 997 1321 1050 4313;4314;4315 3578;3579;3580;3581 3579 4 35260000 13344000 4786700 APEVSQYIYQVYDSILK IQPGNPNYTLSLKCRAPEVSQYIYQVYDSI EVSQYIYQVYDSILKN______________ R A P L K N 1 0 0 1 0 2 1 0 0 2 1 1 0 0 1 2 0 0 3 2 0 0 17 0 2015.0252 P63010 P63010 920 936 AP2B1 AP-2 complex subunit beta yes yes 2;3 0.00058107 93.494 By MS/MS 2 0 2 2 4523000 0 0 4523000 998 1057 1051 4316;4317 3582;3583 3583 2 0 0 1022100 APFDLFENK EGQLEFRALLFIPRRAPFDLFENKKKKNNI LFIPRRAPFDLFENKKKKNNIKLYVRRVFI R A P N K K 1 0 1 1 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 9 0 1079.5288 P08238;Q58FF7 P08238 339 347 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.0056357 95.909 By matching By MS/MS 3.5 1.12 1 1 1 1 1 3 9257100 0 1586300 7670800 999 469 1052 4318;4319;4320;4321 3584 3584 1 0 714350 1360500 APFHQLR ISIKKALDTKIGRYKAPFHQLRISYGTNKG DTKIGRYKAPFHQLRISYGTNKGKNYTEEE K A P L R I 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 7 0 867.47152 O60264;P28370 O60264 930 936 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 0.027632 94.669 By matching By MS/MS 2.5 1.12 1 1 1 1 1 3 7329400 312980 0 7016500 1000 223;693 1053 4322;4323;4324;4325 3585 3585 1 312980 0 1467100 APGAEEYAQQDVLK PGVLHCTTKFCDYGKAPGAEEYAQQDVLKK KAPGAEEYAQQDVLKKSYSKAFTLTISALF K A P L K K 3 0 0 1 0 2 2 1 0 0 1 1 0 0 1 0 0 0 1 1 0 0 14 0 1517.7362 P09543 P09543 262 275 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 1.4556E-45 225.58 By MS/MS By MS/MS 4 1.22 1 1 2 2 2 35515000 0 9883700 25631000 1001 488 1054 4326;4327;4328;4329 3586;3587 3587 2 0 3429500 3642200 APGAGLGQDR SSSWLTRRAIRPENRAPGAGLGQDRQVPLW RPENRAPGAGLGQDRQVPLWGQLLLFLVFV R A P D R Q 2 1 0 1 0 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 10 0 940.47264 P50402 P50402 212 221 EMD Emerin yes yes 2 0.0004516 117.81 By MS/MS By matching 6.33 0.471 2 1 1 2 91702000 0 16427000 75275000 1002 878 1055 4330;4331;4332 3588 3588 1 0 5686300 12256000 APGEQTVPALNLQNAFR ATFVKEITYRASNIKAPGEQTVPALNLQNA GEQTVPALNLQNAFRIIKEVQKRYKTREAE K A P F R I 3 1 2 0 0 2 1 1 0 0 2 0 0 1 2 0 1 0 0 1 0 0 17 0 1824.9482 Q9Y5B9 Q9Y5B9 607 623 SUPT16H FACT complex subunit SPT16 yes yes 2;3 1.4045E-36 207.88 By MS/MS By MS/MS By MS/MS 2 0.913 4 5 2 1 2 5 5 270250000 4390500 119780000 146080000 1003 2296 1056 4333;4334;4335;4336;4337;4338;4339;4340;4341;4342;4343;4344 3589;3590;3591;3592;3593;3594;3595;3596;3597;3598;3599;3600;3601 3599 13 4881700 53056000 32188000 APGFLQPPPLR AGPAERARHQPPQPKAPGFLQPPPLRQPRT PQPKAPGFLQPPPLRQPRTTPPPGAQCEVP K A P L R Q 1 1 0 0 0 1 0 1 0 0 2 0 0 1 4 0 0 0 0 0 0 0 11 0 1191.6764 Q9H074 Q9H074 50 60 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes yes 2 0.00032766 125.58 By matching By MS/MS 3.5 0.5 1 1 1 1 20181000 9538900 10642000 0 1004 1957 1057 4345;4346 3602;3603 3603 2 11006000 3531800 0 APGMNSLEQGMVGLK VVDGQPGFHSDTLSKAPGMNSLEQGMVGLK APGMNSLEQGMVGLKIGDVSSSAVKTVGSV K A P L K I 1 0 1 0 0 1 1 3 0 0 2 1 2 0 1 1 0 0 0 1 0 0 15 0 1530.7534 Q9BYJ9 Q9BYJ9 177 191 YTHDF1 YTH domain-containing family protein 1 yes yes 2 0.00043468 142.1 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 15272000 0 8624200 6647400 1005 1937 1058 4347;4348;4349 3604;3605;3606 3605 3 0 3256500 1289300 APGMNTIDQGMAALK MIDGQSAFANETLNKAPGMNTIDQGMAALK APGMNTIDQGMAALKLGSTEVASNVPKVVG K A P L K L 3 0 1 1 0 1 0 2 0 1 1 1 2 0 1 0 1 0 0 0 0 0 15 0 1516.7378 Q9Y5A9 Q9Y5A9 179 193 YTHDF2 YTH domain-containing family protein 2 yes yes 2 1.9943E-34 210.15 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 27125000 0 13104000 14021000 1006 2294 1059 4350;4351;4352;4353 3607;3608;3609 3609 3 0 5171700 2597400 APGPGLAQGLPQLHSLVLR PLLHYLEVSGCGSLRAPGPGLAQGLPQLHS GLAQGLPQLHSLVLRRNALGPGLSPELGPL R A P L R R 2 1 0 0 0 2 0 3 1 0 5 0 0 0 3 1 0 0 0 1 0 0 19 0 1923.1054 Q8N1G4 Q8N1G4 65 83 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 3.0946E-10 152.9 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 70712000 0 43074000 27638000 1007 1600 1060 4354;4355;4356;4357 3610;3611;3612;3613 3611 4 0 17890000 5360400 APGPWDPLASAAGLK PHCLSEEEGEQDRPRAPGPWDPLASAAGLK APGPWDPLASAAGLKEGGKRKKQKQREESK R A P L K E 4 0 0 1 0 0 0 2 0 0 2 1 0 0 3 1 0 1 0 0 0 0 15 0 1449.7616 O75190 O75190 288 302 DNAJB6 DnaJ homolog subfamily B member 6 yes yes 2 0.0033486 87.001 By MS/MS 6 0 1 1 1526500 0 1526500 0 1008 247 1061 4358 3614 3614 1 0 528420 0 APGSAGHYELPWVEK EVEAQDSDPAPAFSKAPGSAGHYELPWVEK APGSAGHYELPWVEKYRPVKLNEIVGNEDT K A P E K Y 2 0 0 0 0 0 2 2 1 0 1 1 0 0 2 1 0 1 1 1 0 0 15 0 1639.7995 P35250 P35250 27 41 RFC2 Replication factor C subunit 2 yes yes 2 3.3651E-22 128.88 By MS/MS 6 0 1 1 0 0 0 0 1009 745 1062 4359 3615 3615 1 0 0 0 APGSGLALLPLK LERLTYHQLLERCVRAPGSGLALLPLKITF CVRAPGSGLALLPLKITFRSMGGAVSAAEL R A P L K I 2 0 0 0 0 0 0 2 0 0 4 1 0 0 2 1 0 0 0 0 0 0 12 0 1135.6965 P58107 P58107 221 232 EPPK1 Epiplakin yes yes 2 5.221E-05 145.9 By MS/MS 2.5 1.12 1 1 1 1 4 18405000 0 18405000 0 1010 958 1063 4360;4361;4362;4363 3616;3617 3616 2 0 8589900 0 APGTNVAMASNQAVR ALFKCKFEEAQSILKAPGTNVAMASNQAVR APGTNVAMASNQAVRIVKEPTSHDNKDICK K A P V R I 4 1 2 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 2 0 0 15 0 1485.7358 P49792 P49792 1307 1321 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 3.0872E-58 228.74 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 30085000 0 0 30085000 1011 871 1064 4364;4365;4366 3618;3619;3620 3619 3 0 0 6551900 APGTPHSHTKPYVR SGPRKGREVYRHFGKAPGTPHSHTKPYVRS KAPGTPHSHTKPYVRSKGRKFERARGRRAS K A P V R S 1 1 0 0 0 0 0 1 2 0 0 1 0 0 3 1 2 0 1 1 0 0 14 1 1546.8005 Q07020 Q07020 155 168 RPL18 60S ribosomal protein L18 yes yes 3 6.4146E-05 150.21 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 17639000 0 14007000 3632500 1012 1174 1065 4367;4368;4369 3621;3622;3623;3624;3625;3626 3621 6 0 7915200 644560 APIDTSDVEEK ESIANQRITAFKMEKAPIDTSDVEEKAEEI KMEKAPIDTSDVEEKAEEIIAEAEPPSEVV K A P E K A 1 0 0 2 0 0 2 0 0 1 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1202.5667 Q06265 Q06265 301 311 EXOSC9 Exosome complex component RRP45 yes yes 2 0.05621 72.325 By MS/MS 3 0 1 1 4570900 0 0 4570900 1013 1169 1066 4370 3627 3627 1 0 0 886540 APILIATDVASR QQERDWVLNEFKHGKAPILIATDVASRGLD HGKAPILIATDVASRGLDVEDVKFVINYDY K A P S R G 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 1 0 0 12 0 1225.703 Q92841;P17844 P17844 392 403 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 3.9558E-101 202.44 By MS/MS By MS/MS By MS/MS 4.67 2.91 2 1 4 2 2 1 1 2 1 7 7 890100000 32957000 727750000 129390000 1014 588;1725 1067 4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385 3628;3629;3630;3631;3632;3633;3634;3635;3636;3637;3638;3639;3640;3641 3638 13 38025000 291560000 24918000 APIQDIWYHEDR EPVFQRPRVRYGKAKAPIQDIWYHEDRIRA KAKAPIQDIWYHEDRIRAKFYSVYGSGQRA K A P D R I 1 1 0 2 0 1 1 0 1 2 0 0 0 0 1 0 0 1 1 0 0 0 12 0 1541.7263 Q9Y3D9 Q9Y3D9 58 69 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 2;3 2.7114E-06 162.36 By MS/MS 6.67 0.471 1 2 3 25845000 0 0 25845000 1015 2272 1068 4386;4387;4388 3642;3643 3643 2 0 0 4527000 APIQWEER PEISAAVMKIFDAAKAPIQWEERNVTAIQG KIFDAAKAPIQWEERNVTAIQGPGGKWMIP K A P E R N 1 1 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 8 0 1027.5087 P50213 P50213 59 66 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes yes 2 0.019042 85.064 By MS/MS 6 0 1 1 6709900 0 0 6709900 1016 876 1069 4389 3644 3644 1 0 0 1003900 APIRPDIVNFVHTNLR GESSGKNVTLPAVFKAPIRPDIVNFVHTNL PIRPDIVNFVHTNLRKNNRQPYAVSELAGH K A P L R K 1 2 2 1 0 0 0 0 1 2 1 0 0 1 2 0 1 0 0 2 0 0 16 1 1861.0323 P36578 P36578 30 45 RPL4 60S ribosomal protein L4 yes yes 2;3;4 1.7954E-127 270.79 By MS/MS By MS/MS 3.58 1.74 4 4 5 4 5 3 1 9 17 1689100000 0 656550000 1032600000 1017 762 1070 4390;4391;4392;4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410;4411;4412;4413;4414;4415 3645;3646;3647;3648;3649;3650;3651;3652;3653;3654;3655;3656;3657;3658;3659;3660;3661;3662;3663;3664;3665;3666;3667;3668;3669 3664 24 0 186440000 161750000 APIRPDIVNFVHTNLRK GESSGKNVTLPAVFKAPIRPDIVNFVHTNL IRPDIVNFVHTNLRKNNRQPYAVSELAGHQ K A P R K N 1 2 2 1 0 0 0 0 1 2 1 1 0 1 2 0 1 0 0 2 0 0 17 2 1989.1272 P36578 P36578 30 46 RPL4 60S ribosomal protein L4 yes yes 4 0.0023118 67.994 By MS/MS 4.5 0.5 1 1 2 39894000 0 39894000 0 1018 762 1071 4416;4417 3670 3670 1 0 12043000 0 APIVTVGVNNDPADVR NKRTQIVTEIISEIRAPIVTVGVNNDPADV PIVTVGVNNDPADVRKKELKMAEIKVKLIE R A P V R K 2 1 2 2 0 0 0 1 0 1 0 0 0 0 2 0 1 0 0 4 0 0 16 0 1635.858 Q9BPX3 Q9BPX3 471 486 NCAPG Condensin complex subunit 3 yes yes 2 3.5308E-05 124.39 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 24325000 0 11253000 13072000 1019 1873 1072 4418;4419;4420 3671;3672 3672 2 0 4944000 2954000 APKPDGPGGGPGGSHMGGNYGDDR ENMNFSWRNECNQCKAPKPDGPGGGPGGSH GPGGSHMGGNYGDDRRGGRGGYDRGGYRGR K A P D R R 1 1 1 3 0 0 0 9 1 0 0 1 1 0 4 1 0 0 1 0 0 0 24 1 2251.9665 P35637 P35637 449 472 FUS RNA-binding protein FUS yes yes 3;4 1.8921E-21 143.67 By MS/MS By MS/MS 3.69 1.97 5 6 8 5 6 2 3 1 15 21 1075700000 0 368490000 707240000 1020 756 1073;1074 4421;4422;4423;4424;4425;4426;4427;4428;4429;4430;4431;4432;4433;4434;4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450;4451;4452;4453;4454;4455;4456 3673;3674;3675;3676;3677;3678;3679;3680;3681;3682;3683;3684;3685;3686;3687;3688;3689;3690;3691;3692;3693;3694;3695;3696;3697;3698;3699;3700;3701;3702 3676 374 30 0 146250000 128920000 APLEAVAAK LAGKPVFKFQLAKFKAPLEAVAAKMEVKKC QLAKFKAPLEAVAAKMEVKKCVDTMAYEKR K A P A K M 4 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 0 0 9 0 868.50182 O95968 O95968 51 59 SCGB1D1 Secretoglobin family 1D member 1 yes yes 2 0.00063684 128.61 By MS/MS 9.5 0.5 1 1 2 27077000 27077000 0 0 1021 349 1075 4457;4458 3703;3704 3703 2 35378000 0 0 APLNVQFNSPLPGDAVK GKPTHFTVYTKGAGKAPLNVQFNSPLPGDA LNVQFNSPLPGDAVKDLDIIDNYDYSHTVK K A P V K D 2 0 2 1 0 1 0 1 0 0 2 1 0 1 3 1 0 0 0 2 0 0 17 0 1765.9363 O75369 O75369 878 894 FLNB Filamin-B yes yes 2 2.1204E-06 153.81 By MS/MS 1 0 1 1 6988000 0 6988000 0 1022 254 1076 4459 3705;3706 3705 2 0 3415600 0 APLPDLYPFGTMR VTRPEPQALPSPAIRAPLPDLYPFGTMRGG IRAPLPDLYPFGTMRGGGFGDRDRDRDRGG R A P M R G 1 1 0 1 0 0 0 1 0 0 2 0 1 1 3 0 1 0 1 0 0 0 13 0 1476.7435 Q92841 Q92841 69 81 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 3.0908E-07 166.66 By MS/MS By MS/MS 3.4 2.15 2 1 3 3 1 6 4 163990000 0 93194000 70796000 1023 1725 1077;1078 4460;4461;4462;4463;4464;4465;4466;4467;4468;4469 3707;3708;3709;3710;3711;3712;3713;3714;3715;3716;3717;3718;3719 3711 13 0 40261000 13610000 APLQVAVLGPTGVAEPVEVR RVPQTFTVDCSQAGRAPLQVAVLGPTGVAE AVLGPTGVAEPVEVRDNGDGTHTVHYTPAT R A P V R D 3 1 0 0 0 1 2 2 0 0 2 0 0 0 3 0 1 0 0 5 0 0 20 0 2001.1259 Q14315 Q14315 1475 1494 FLNC Filamin-C yes yes 2;3 3.2945E-17 169.04 By MS/MS By MS/MS 1 0 4 2 2 30021000 0 22529000 7491700 1024 1298 1079 4470;4471;4472;4473 3720;3721;3722;3723 3722 4 0 11012000 1614200 APLYDLAAHEDK SLDNIVKLWDTRSCKAPLYDLAAHEDKVLS SCKAPLYDLAAHEDKVLSVDWTDTGLLLSG K A P D K V 3 0 0 2 0 0 1 0 1 0 2 1 0 0 1 0 0 0 1 0 0 0 12 0 1341.6565 Q9GZL7 Q9GZL7 377 388 WDR12 Ribosome biogenesis protein WDR12 yes yes 3 0.034587 52.863 By MS/MS 4 0 1 1 17189000 0 0 17189000 1025 1949 1080 4474 3724 3724 1 0 0 2807500 APPGFLGSLVPVVVETLGDAYPELQR RILRRAVRFSMEILKAPPGFLGSLVPVVVE VVVETLGDAYPELQRNSAQIANLVSEDEAA K A P Q R N 2 1 0 1 0 1 2 3 0 0 4 0 0 1 4 1 1 0 1 4 0 0 26 0 2723.4534 Q5JTZ9 Q5JTZ9 367 392 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 3 0.0012891 41.423 By MS/MS 2 0 1 1 1354900 0 0 1354900 1026 1440 1081 4475 3725 3725 0 0 0 306180 APPPSLTDCIGTVDSR ______________________________ PPPSLTDCIGTVDSRAESIDKKISRLDAEL K A P S R A 1 1 0 2 1 0 0 1 0 1 1 0 0 0 3 2 2 0 0 1 0 0 16 0 1684.809 Q9NZZ3 Q9NZZ3 12 27 CHMP5 Charged multivesicular body protein 5 yes yes 2 3.5984E-05 122.42 By MS/MS 6 0 1 1 5257200 0 0 5257200 1027 2108 1082 4476 3726 3726 1 0 0 786530 APPSSQDKIPQQNSESAMAKPQVVVAPVLMSK PSRPGALPEQTRPLRAPPSSQDKIPQQNSE MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS R A P S K L 4 0 1 1 0 4 1 0 0 1 1 3 2 0 5 5 0 0 0 4 0 0 32 2 3361.7374 Q9H074 Q9H074 96 127 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes yes 4 1.15E-12 73.817 By MS/MS 4 0 1 1 13840000 0 13840000 0 1028 1957 1083 4477 3727 3727 1 0 4593100 0 APPVDDAEVDELVLQTK RPGKKPHSTRRSQPKAPPVDDAEVDELVLQ PVDDAEVDELVLQTKRSSRRQSLELQKCEE K A P T K R 2 0 0 3 0 1 2 0 0 0 2 1 0 0 2 0 1 0 0 3 0 0 17 0 1837.9309 Q9UIG0 Q9UIG0 1319 1335 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.020203 62.14 By MS/MS 1.5 0.5 1 1 2 5047900 0 5047900 0 1029 2164 1084 4478;4479 3728 3728 1 0 2369900 0 APQLTSPELMALTR EYYLQNAFLVAYTKKAPQLTSPELMALTRK KAPQLTSPELMALTRKMANAGAICCHLSED K A P T R K 2 1 0 0 0 1 1 0 0 0 3 0 1 0 2 1 2 0 0 0 0 0 14 0 1526.8127 CON__Q3SZ57 CON__Q3SZ57 440 453 yes yes 2 0.00062498 142.08 By MS/MS By matching 3.33 0.471 2 1 1 2 8511200 4402800 4108400 0 + 1030 83 1085 4480;4481;4482 3729 3729 1 5079900 1476200 0 APQQQPPPQQPPPPQPPPQQPPPPPSYSPAR NRDNNNSNNRGSYNRAPQQQPPPQQPPPPQ PPQQPPPPPSYSPARNPPGASTYNKNSNIP R A P A R N 2 1 0 0 0 8 0 0 0 0 0 0 0 0 17 2 0 0 1 0 0 0 31 0 3327.6789 Q9BUJ2 Q9BUJ2 691 721 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 4 4.6025E-15 80.009 By MS/MS 2.5 0.5 1 1 2 7207200 0 7207200 0 1031 1907 1086 4483;4484 3730 3730 1 0 3171500 0 APQQWATFAR ______________________________ SSFSRAPQQWATFARIWYLLDGKMQPPGKL R A P A R I 3 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 10 0 1174.5883 Q9BYD1 Q9BYD1 7 16 MRPL13 39S ribosomal protein L13, mitochondrial yes yes 2 0.0004516 117.81 By MS/MS By matching 7 0 2 1 1 18168000 0 5686500 12481000 1032 1934 1087 4485;4486 3731 3731 1 0 3265200 2214700 APQVLVLAPTR IEKLHGELQDRKRGRAPQVLVLAPTRELAN KRGRAPQVLVLAPTRELANQVSKDFSDITK R A P T R E 2 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 2 0 0 11 0 1163.7026 Q9NR30 Q9NR30 260 270 DDX21 Nucleolar RNA helicase 2 yes yes 2 1.3799E-13 179.8 By MS/MS By MS/MS By MS/MS 4.22 3.12 1 3 2 1 1 1 2 3 4 193740000 6841800 106940000 79952000 1033 2038 1088 4487;4488;4489;4490;4491;4492;4493;4494;4495 3732;3733;3734;3735;3736 3734 5 8083600 49032000 17583000 APQVVAEAAK YSESAKKEVVAEVVKAPQVVAEAAKTAKRK AEVVKAPQVVAEAAKTAKRKRESESESDET K A P A K T 4 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 2 0 0 10 0 982.54475 O60832 O60832 434 443 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.041563 85.744 By MS/MS 3.5 0.5 1 1 2 21964000 0 0 21964000 1034 235 1089 4496;4497 3737 3737 0 0 0 3855300 APSHSESALNNDSK EKPAPQMNGSTGDARAPSHSESALNNDSKT RAPSHSESALNNDSKTCNTNPHLNALSTDS R A P S K T 2 0 2 1 0 0 1 0 1 0 1 1 0 0 1 4 0 0 0 0 0 0 14 0 1455.659 Q9NZB2 Q9NZB2 1073 1086 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 3 0.069315 34.82 By MS/MS 2.5 0.5 1 1 2 1340200 0 1340200 0 1035 2101 1090 4498;4499 3738 3738 1 0 596440 0 APSKPWSQVDEATIR QLRQKWHSLFLRRMRAPSKPWSQVDEATIR APSKPWSQVDEATIRAIIAVLSTEEQSAGL R A P I R A 2 1 0 1 0 1 1 0 0 1 0 1 0 0 2 2 1 1 0 1 0 0 15 1 1683.858 Q9H6S0 Q9H6S0 1140 1154 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 3 0.056457 41.088 By MS/MS 2 0 1 1 6068700 0 6068700 0 1036 1989 1091 4500 3739 3739 1 0 2732800 0 APSSSSLNSATSSQSK RNKLFDHLKATGHARAPSSSSLNSATSSQS PSSSSLNSATSSQSKKEKRKNR________ R A P S K K 2 0 1 0 0 1 0 0 0 0 1 1 0 0 1 8 1 0 0 0 0 0 16 0 1537.722 Q5F1R6 Q5F1R6 509 524 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.0016559 91.858 By MS/MS 3 0 1 1 913500 0 913500 0 1037 1436 1092 4501 3740 3740 1 0 389430 0 APSTPLLTVR ______________________________ ______________________________ M A P V R G 1 1 0 0 0 0 0 0 0 0 2 0 0 0 2 1 2 0 0 1 0 0 10 0 1053.6182 Q9BY44 Q9BY44 2 11 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 2 0.018256 83.998 By MS/MS 3.5 0.5 1 1 2 7677100 0 7677100 0 1038 1932 1093 4502;4503 3741 3741 1 0 2893400 0 APSTWLTAYVVK AFRQPSSAFAAFVKRAPSTWLTAYVVKVFS VKRAPSTWLTAYVVKVFSLAVNLIAIDSQV R A P V K V 2 0 0 0 0 0 0 0 0 0 1 1 0 0 1 1 2 1 1 2 0 0 12 0 1334.7234 P01024 P01024 1073 1084 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.00018735 132.88 By MS/MS By matching 9.5 0.5 1 1 1 1 7422400 7079600 342880 0 1039 371 1094 4504;4505 3742 3742 1 3973800 1734700 0 APSTYGGGLSVSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSRF RAPSTYGGGLSVSSRFSSGGACGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 4 1 0 1 1 0 0 14 0 1337.6575 CON__P08779;P08779 CON__P08779 42 55 KRT16 Keratin, type I cytoskeletal 16 yes no 2 2.9563E-07 168.22 By MS/MS By MS/MS By MS/MS 4.79 2.65 2 2 1 1 2 2 2 1 1 7 2 5 536370000 414200000 13198000 108970000 + 1040 53 1095 4506;4507;4508;4509;4510;4511;4512;4513;4514;4515;4516;4517;4518;4519 3743;3744;3745;3746;3747;3748;3749;3750;3751;3752;3753 3753 11 528450000 6285000 16483000 APSTYGGGLSVSSSR GSSRISSVLAGGSCRAPSTYGGGLSVSSSR APSTYGGGLSVSSSRFSSGGAYGLGGGYGG R A P S R F 1 1 0 0 0 0 0 3 0 0 1 0 0 0 1 5 1 0 1 1 0 0 15 0 1424.6896 CON__P02533;P02533 CON__P02533 42 56 KRT14 Keratin, type I cytoskeletal 14 yes no 2 7.9681E-64 226.04 By MS/MS By MS/MS By MS/MS 5.23 2.83 3 3 2 3 3 3 3 2 1 3 8 9 9 1840700000 1317800000 110120000 412860000 + 1041 35 1096 4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530;4531;4532;4533;4534;4535;4536;4537;4538;4539;4540;4541;4542;4543;4544;4545 3754;3755;3756;3757;3758;3759;3760;3761;3762;3763;3764;3765;3766;3767;3768;3769;3770;3771;3772;3773;3774;3775;3776;3777;3778;3779;3780 3772 27 1458100000 45098000 164260000 APSYLEISSMR GCVVVDGMPPGVSFKAPSYLEISSMRRILD VSFKAPSYLEISSMRRILDSAEFIKFTVIR K A P M R R 1 1 0 0 0 0 1 0 0 1 1 0 1 0 1 3 0 0 1 0 0 0 11 0 1252.6122 P78347 P78347 917 927 GTF2I General transcription factor II-I yes yes 2 5.0832E-14 183.27 By matching By MS/MS By MS/MS 4 2.53 1 3 1 1 2 2 42706000 9517000 10053000 23136000 1042 1085 1097 4546;4547;4548;4549;4550 3781;3782;3783;3784 3783 4 10981000 4804100 4965800 APTAALPQGVVMAASPGSLHSPQQLAEEATR HMAAATGDMPTYQIRAPTAALPQGVVMAAS GSLHSPQQLAEEATRKRELRLMKNREAAKE R A P T R K 7 1 0 0 0 3 2 2 1 0 3 0 1 0 4 3 2 0 0 2 0 0 31 0 3084.5662 Q03060 Q03060 257 287 CREM cAMP-responsive element modulator yes yes 3 8.7754E-06 47.429 By MS/MS By MS/MS 7.25 1.09 1 2 1 2 2 14605000 0 5009600 9595300 1043 1153 1098 4551;4552;4553;4554 3785;3786 3786 2 0 2042600 2189300 APTTAAAAAAGVSSTK ASSSPAAGIPQEPQRAPTTAAAAAAGVSST PTTAAAAAAGVSSTKSKKGAKSHQGEKNAS R A P T K S 7 0 0 0 0 0 0 1 0 0 0 1 0 0 1 2 3 0 0 1 0 0 16 0 1373.7151 O15479 O15479 65 80 MAGEB2 Melanoma-associated antigen B2 yes yes 2 5.2438E-05 82.202 By MS/MS 5 0 1 1 0 0 0 0 1044 183 1099 4555 3787 3787 1 0 0 0 APVAIGVAAMSTAEMLTSGLK VQKGDLCAISLVGNRAPVAIGVAAMSTAEM VAAMSTAEMLTSGLKGRGFSVLHTYQDHLW R A P L K G 5 0 0 0 0 0 1 2 0 1 2 1 2 0 1 2 2 0 0 2 0 0 21 0 2017.0588 P41214 P41214 142 162 EIF2D Eukaryotic translation initiation factor 2D yes yes 3 0.00023351 67.995 By MS/MS 3 0 1 1 1355500 0 1355500 0 1045 792 1100 4556 3788 3788 1 0 577850 0 APVEHVVADAGAFLR ______________________________ APVEHVVADAGAFLRHAALQDIGKNIYTIR M A P L R H 4 1 0 1 0 0 1 1 1 0 1 0 0 1 1 0 0 0 0 3 0 0 15 0 1550.8205 Q9ULX3 Q9ULX3 2 16 NOB1 RNA-binding protein NOB1 yes yes 3 0.0021994 74.789 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 13962000 0 4410400 9551800 1046 2194 1101 4557;4558;4559;4560 3789;3790;3791 3789 3 0 2269600 1543800 APVIDIGIANTGK YTFTATPEDFPKKHKAPVIDIGIANTGKFI HKAPVIDIGIANTGKFIMTASSDTTVLIWS K A P G K F 2 0 1 1 0 0 0 2 0 3 0 1 0 0 1 0 1 0 0 1 0 0 13 0 1267.7136 Q9Y4P3 Q9Y4P3 189 201 TBL2 Transducin beta-like protein 2 yes yes 2 0.001141 112.95 By matching By MS/MS 4.33 0.471 2 1 1 2 84577000 50370000 34207000 0 1047 2288 1102 4561;4562;4563 3792 3792 1 39297000 10456000 0 APVLSDSSCK KSSGSSYPSLLQCLKAPVLSDSSCKSSYPG LQCLKAPVLSDSSCKSSYPGQITGNMICVG K A P C K S 1 0 0 1 1 0 0 0 0 0 1 1 0 0 1 3 0 0 0 1 0 0 10 0 1062.5016 CON__P00761 CON__P00761 148 157 yes yes 2 0.034544 76.827 By MS/MS 8.5 1.5 1 1 2 2622000 2622000 0 0 + 1048 32 1103 4564;4565 3793;3794 3794 1 5209800 0 0 APVNTAELTDLLIQQNHIGSVIK DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ TDLLIQQNHIGSVIKQTDVSEDSNDDMDED K A P I K Q 2 0 2 1 0 2 1 1 1 3 3 1 0 0 1 1 2 0 0 2 0 0 23 0 2473.354 Q9P287 Q9P287 85 107 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 3 0.002011 50.237 By MS/MS By matching 5.67 0.471 1 2 2 1 7062400 0 3447600 3614800 1049 2121 1104 4566;4567;4568 3795 3795 1 0 1079100 540810 APVPASELLASGVLSR VETLRQERLSFSGLRAPVPASELLASGVLS PVPASELLASGVLSRAQFEQLKDGKTTVKD R A P S R A 3 1 0 0 0 0 1 1 0 0 3 0 0 0 2 3 0 0 0 2 0 0 16 0 1565.8777 Q15149 Q15149 3447 3462 PLEC Plectin yes yes 2;3 6.0089E-06 158.25 By matching By MS/MS By MS/MS 1.57 0.728 4 2 1 1 3 3 105400000 1354000 69029000 35018000 1050 1348 1105 4569;4570;4571;4572;4573;4574;4575 3796;3797;3798;3799 3797 4 1354000 33492000 7492900 APVPTGEVYFADSFDR PDTTAPPSSPKVTYKAPVPTGEVYFADSFD PVPTGEVYFADSFDRGTLSGWILSKAKKDD K A P D R G 2 1 0 2 0 0 1 1 0 0 0 0 0 2 2 1 1 0 1 2 0 0 16 0 1769.8261 P27824 P27824 62 77 CANX Calnexin yes yes 2 0.00081456 96.306 By matching By MS/MS 3.5 0.5 2 2 1 3 18058000 1914100 0 16144000 1051 684 1106 4576;4577;4578;4579 3800;3801 3800 1 2208500 0 2798000 APVQPQQSPAAAPGGTDEKPSGK ______________________________ PAAAPGGTDEKPSGKERRDAGDKDKEQELS K A P G K E 4 0 0 1 0 3 1 3 0 0 0 2 0 0 5 2 1 0 0 1 0 0 23 1 2217.1026 Q13200 Q13200 9 31 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3 0.006462 43.841 By MS/MS 2 0 1 1 1786000 0 1786000 0 1052 1229 1107 4580 3802 3802 1 0 804270 0 APVSYPNTLPESFTK DYTFNVDQKLPAEEKAPVSYPNTLPESFTK APVSYPNTLPESFTKFLQEQRMACEVGLYY K A P T K F 1 0 1 0 0 0 1 0 0 0 1 1 0 1 3 2 2 0 1 1 0 0 15 0 1649.8301 Q8WX92 Q8WX92 399 413 NELFB Negative elongation factor B yes yes 2 0.00030554 120.57 By MS/MS 3 0 1 1 4140800 0 0 4140800 1053 1692 1108 4581 3803 3803 1 0 0 803130 AQAAAPASVPAQAPK RPKAKAKAKAKDQTKAQAAAPASVPAQAPK AQAAAPASVPAQAPKRTQAPTKASE_____ K A Q P K R 7 0 0 0 0 2 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 15 0 1376.7412 P47914 P47914 135 149 RPL29 60S ribosomal protein L29 yes yes 2 0.00015597 151.98 By MS/MS By MS/MS By MS/MS 5.93 2.49 1 2 2 1 2 3 1 2 1 2 7 6 455480000 11158000 321690000 122640000 1054 839 1109 4582;4583;4584;4585;4586;4587;4588;4589;4590;4591;4592;4593;4594;4595;4596 3804;3805;3806;3807;3808;3809;3810;3811;3812;3813;3814;3815;3816;3817;3818 3810 15 21410000 178730000 28103000 AQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLR NHKELKTDSSPNQARAQAALQAVNSVQSGN VDAGMAMAGQSPVLRIIVENLFYPVTLDVL R A Q L R I 13 1 2 1 0 4 0 3 0 0 4 0 2 0 1 4 0 0 0 4 0 0 39 0 3679.8774 P26599 P26599 147 185 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 3;4 1.6929E-81 163.4 By MS/MS By MS/MS 3.17 1.07 2 3 3 10 7 11 108010000 0 31463000 76546000 1055 671 1110;1111;1112 4597;4598;4599;4600;4601;4602;4603;4604;4605;4606;4607;4608;4609;4610;4611;4612;4613;4614 3819;3820;3821;3822;3823;3824;3825;3826;3827;3828;3829;3830;3831;3832 3831 301;302 14 0 10491000 13647000 AQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLR NHRELKTDNLPNQARAQAALQAVSAVQSGS SNEGTVLPGQSPVLRIIIENLFYPVTLEVL R A Q L R I 6 1 1 0 0 4 1 5 0 0 5 0 0 0 3 6 1 0 0 4 0 0 37 0 3516.8536 O95758 O95758 147 183 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 4 2.0827E-19 71.47 By MS/MS 4.5 0.5 1 1 2 8530600 0 8530600 0 1056 337 1113 4615;4616 3833;3834 3833 2 0 2656100 0 AQADLALEK QQEREVARLTQERGRAQADLALEKAARAEL TQERGRAQADLALEKAARAELEMRLQNALN R A Q E K A 3 0 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 957.51311 Q14980 Q14980 1016 1024 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.072693 66.621 By MS/MS 1 0 1 1 11530000 0 11530000 0 1057 1327 1114 4617 3835 3835 1 0 5635900 0 AQAEAQQPTFDALR LPELEATKASLKKLRAQAEAQQPTFDALRD RAQAEAQQPTFDALRDELRGAQEVGERLQQ R A Q L R D 4 1 0 1 0 3 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 14 0 1544.7583 Q15149 Q15149 1274 1287 PLEC Plectin yes yes 2 5.6776E-25 202.31 By MS/MS 1 0 1 1 4076900 0 4076900 0 1058 1348 1115 4618 3836 3836 1 0 1992700 0 AQAEAQQPTFDALRDELR LPELEATKASLKKLRAQAEAQQPTFDALRD EAQQPTFDALRDELRGAQEVGERLQQRHGE R A Q L R G 4 2 0 2 0 3 2 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 18 1 2058.013 Q15149 Q15149 1274 1291 PLEC Plectin yes yes 2;3 1.5311E-22 194.98 By MS/MS By MS/MS 1 0 3 1 2 46987000 0 21735000 25252000 1059 1348 1116 4619;4620;4621 3837;3838;3839 3839 3 0 10624000 5440900 AQAELENVSGALNEAESK DGERARAEAAEKLQRAQAELENVSGALNEA ELENVSGALNEAESKTIRLSKELSSTEAQL R A Q S K T 4 0 2 0 0 1 4 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 18 0 1858.8909 Q7Z406 Q7Z406 1302 1319 MYH14 Myosin-14 yes yes 2 1.0891E-30 202.4 By MS/MS 1 0 1 1 10005000 0 10005000 0 1060 1531 1117 4622 3840 3840 1 0 4890200 0 AQAEVEGLGK EPARECAQRIAEQQKAQAEVEGLGKGVARL AEQQKAQAEVEGLGKGVARLSAEAEKVLAL K A Q G K G 2 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1000.5189 Q15149 Q15149 1166 1175 PLEC Plectin yes yes 2 0.011833 87.639 By MS/MS 1 0 1 1 10292000 0 10292000 0 1061 1348 1118 4623 3841 3841 1 0 5030400 0 AQALEDLAGFK TLPGSKRQLQTPKEKAQALEDLAGFKELFQ PKEKAQALEDLAGFKELFQTPGHTEELVAA K A Q F K E 3 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1161.603 P46013 P46013 1218 1228 MKI67 Antigen KI-67 yes no 2 0.001995 108.98 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 28200000 1733300 12969000 13498000 1062 821 1119 4624;4625;4626 3842 3842 1 1733300 6339000 3050300 AQALEELTGFR NLPGSNRRLQTRKEKAQALEELTGFRELFQ RKEKAQALEELTGFRELFQTPCTDNPTTDE K A Q F R E 2 1 0 0 0 1 2 1 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 0 1233.6354 P46013 P46013 1826 1836 MKI67 Antigen KI-67 yes yes 2 0.00106 113.74 By matching By MS/MS 1.33 0.471 2 1 1 2 13112000 1388800 0 11723000 1063 821 1120 4627;4628;4629 3843;3844 3843 2 1388800 0 2562600 AQAVSEDAGGNEGR EAPGEQARDERSDSRAQAVSEDAGGNEGRA RAQAVSEDAGGNEGRAAEAEPRALENGDAD R A Q G R A 3 1 1 1 0 1 2 3 0 0 0 0 0 0 0 1 0 0 0 1 0 0 14 0 1359.6015 P55884 P55884 121 134 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.00042857 122.7 By MS/MS 2 0 1 1 2851400 0 2851400 0 1064 947 1121 4630 3845 3845 1 0 1284000 0 AQAVTQPVPLANKPVPAQSTFPSK NWDQNVQSMETQIDKAQAVTQPVPLANKPV LANKPVPAQSTFPSKTGGMEGGTAVATSSL K A Q S K T 4 0 1 0 0 3 0 0 0 0 1 2 0 1 5 2 2 0 0 3 0 0 24 1 2475.3486 P49750 P49750 938 961 YLPM1 YLP motif-containing protein 1 yes yes 3 1.7173E-07 81.553 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 42290000 0 10368000 31923000 1065 865 1122 4631;4632;4633 3846;3847;3848;3849 3848 4 0 5067700 6924900 AQCPIVER LPHSAGRYAAKRFRKAQCPIVERLTNSMMM AAKRFRKAQCPIVERLTNSMMMHGRNNGKK K A Q E R L 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 8 0 971.48585 P46782 P46782 64 71 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 0.0017016 112.17 By MS/MS 7 0 1 1 8259700 0 0 8259700 1066 832 1123 4634 3850 3850 1 0 0 1465600 AQDALPFFMMHLGYEK LYSCLEDRNGDVRKKAQDALPFFMMHLGYE QDALPFFMMHLGYEKMAKATGKLKPTSKDQ K A Q E K M 2 0 0 1 0 1 1 1 1 0 2 1 2 2 1 0 0 0 1 0 0 0 16 0 1896.8903 Q14008 Q14008 1038 1053 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 5.998E-05 141.38 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 49382000 0 613420 48769000 1067 1279 1124 4635;4636;4637;4638 3851;3852;3853;3854 3853 4 0 299830 10625000 AQDEAFALQDVPLSSVVR GLVTLKHVYEIARIKAQDEAFALQDVPLSS EAFALQDVPLSSVVRSIIGSARSLGIRVVK K A Q V R S 3 1 0 2 0 2 1 0 0 0 2 0 0 1 1 2 0 0 0 3 0 0 18 0 1943.9953 Q9Y3B7 Q9Y3B7 125 142 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 1.2343E-79 245.03 By MS/MS By MS/MS 7 0 2 1 1 32943000 0 2366900 30576000 1068 2266 1125 4639;4640 3855;3856 3856 2 0 1359100 5425500 AQDQGEKENPMR ______________________________ ______________________________ M A Q M R E 1 1 1 1 0 2 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 12 1 1401.6307 P62913 P62913 2 13 RPL11 60S ribosomal protein L11 yes yes 2 2.5304E-73 245.08 By MS/MS By MS/MS 8.25 1.3 2 1 1 1 3 167270000 0 27475000 139800000 1069 1051 1126 4641;4642;4643;4644 3857;3858;3859;3860;3861;3862 3858 6 0 15776000 27770000 AQDVLVQEMEVVK EHNPYEKFSKEELKKAQDVLVQEMEVVKQG KKAQDVLVQEMEVVKQGMSHGELSSEAYNQ K A Q V K Q 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 4 0 0 13 0 1486.7701 Q99459 Q99459 632 644 CDC5L Cell division cycle 5-like protein yes yes 2 0.0089219 89.403 By MS/MS 4 0 1 1 20780000 0 0 20780000 1070 1843 1127 4645 3863 3863 1 0 0 3394000 AQEEADYIEWLK GSSLLQKRAKTRQEKAQEEADYIEWLKGQK QEKAQEEADYIEWLKGQKEIRNPDSLKELT K A Q L K G 2 0 0 1 0 1 3 0 0 1 1 1 0 0 0 0 0 1 1 0 0 0 12 0 1493.7038 Q8N9T8 Q8N9T8 196 207 KRI1 Protein KRI1 homolog yes yes 2 0.002201 109.42 By MS/MS 1.5 0.5 1 1 2 13076000 0 0 13076000 1071 1619 1128 4646;4647 3864 3864 1 0 0 2939400 AQEEAKEAEMSRK FVKESKQKMNARKRRAQEEAKEAEMSRKEL RRAQEEAKEAEMSRKELGLDEGVDSLKAAI R A Q R K E 3 1 0 0 0 1 4 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 13 2 1505.7144 Q8WXX5 Q8WXX5 193 205 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.038545 94.85 By matching By MS/MS 6 0 2 1 1 21601000 0 3976300 17625000 1072 1698 1129 4648;4649 3865 3865 657 1 0 1376500 2636900 AQEEGPGEPPPPELALLPPPPPPPPTPATPTSSASNLDLGEQR KPPSEKPRLRRSSPRAQEEGPGEPPPPELA TPTSSASNLDLGEQRERWETFQKRQKLTSE R A Q Q R E 4 1 1 1 0 2 5 3 0 0 5 0 0 0 15 3 3 0 0 0 0 0 43 0 4345.1754 Q7Z7K6 Q7Z7K6 73 115 CENPV Centromere protein V yes yes 4 1.1417E-22 72.078 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 29790000 0 2929200 26861000 1073 1538 1130 4650;4651;4652 3866;3867 3867 2 0 1014000 4084600 AQEGPDAEIIGGER KVALELPASKFLWLKAQEGPDAEIIGGERS KAQEGPDAEIIGGERSVFYLLMKMFVTSSH K A Q E R S 2 1 0 1 0 1 3 3 0 2 0 0 0 0 1 0 0 0 0 0 0 0 14 0 1440.6845 O60287 O60287 622 635 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0038888 92.19 By MS/MS 1 0 1 1 5998500 0 0 5998500 1074 224 1131 4653 3868 3868 1 0 0 1292500 AQELGHSQSALASAQR RDSALETLQGQLEEKAQELGHSQSALASAQ QELGHSQSALASAQRELAAFRTKVQDHSKA K A Q Q R E 4 1 0 0 0 3 1 1 1 0 2 0 0 0 0 3 0 0 0 0 0 0 16 0 1652.823 Q14980 Q14980 1175 1190 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.7636E-06 159.08 By matching By MS/MS By MS/MS 1.2 0.4 4 1 1 1 3 194500000 13148000 39411000 141940000 1075 1327 1132 4654;4655;4656;4657;4658 3869;3870;3871 3870 3 13148000 19264000 30606000 AQELIQATNQILSHR LLFKMEEANLASRAKAQELIQATNQILSHR AQELIQATNQILSHRKPPSSLGMTPAPVPT K A Q H R K 2 1 1 0 0 3 1 0 1 2 2 0 0 0 0 1 1 0 0 0 0 0 15 0 1720.922 Q9H7N4 Q9H7N4 1124 1138 SCAF1 Splicing factor, arginine/serine-rich 19 yes yes 3 5.2985E-05 124.62 By matching By MS/MS By MS/MS 4.5 2.5 2 2 1 2 1 13524000 902010 3744300 8877400 1076 1993 1133 4659;4660;4661;4662 3872;3873 3873 2 1086800 1811500 1575200 AQENLNPLVVLNLFK TAIEHNKEVEPLLGRAQENLNPLVVLNLFK AQENLNPLVVLNLFKRIPAEDVPLLLMNPE R A Q F K R 1 0 3 0 0 1 1 0 0 0 4 1 0 1 1 0 0 0 0 2 0 0 15 0 1710.9669 O14802 O14802 214 228 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 2 0.014599 72.652 By MS/MS 2 0 1 1 1184300 0 1184300 0 1077 146 1134 4663 3874 3874 1 0 533310 0 AQEPESGLSEETQVK DYVAVARGSKDHNIRAQEPESGLSEETQVK AQEPESGLSEETQVKCLMDQATDPNILGRT R A Q V K C 1 0 0 0 0 2 4 1 0 0 1 1 0 0 1 2 1 0 0 1 0 0 15 0 1630.7686 P78527 P78527 4091 4105 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00040636 115.14 By MS/MS 1 0 1 1 5124900 0 0 5124900 1078 1089 1135 4664 3875 3875 1 0 0 1104200 AQEQQQQMAELHSK HTQSSHASLRADAEKAQEQQQQMAELHSKL KAQEQQQQMAELHSKLQSSEAEVRSKCEEL K A Q S K L 2 0 0 0 0 5 2 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 14 0 1654.7733 Q9P2E9 Q9P2E9 908 921 RRBP1 Ribosome-binding protein 1 yes yes 3 0.00080442 89.624 By MS/MS 1.5 0.5 1 1 2 7146600 0 0 7146600 1079 2122 1136 4665;4666 3876 3876 1 0 0 1552600 AQFAQPEILIGTIPGAGGTQR CELAMMCDIIYAGEKAQFAQPEILIGTIPG EILIGTIPGAGGTQRLTRAVGKSLAMEMVL K A Q Q R L 3 1 0 0 0 3 1 4 0 3 1 0 0 1 2 0 2 0 0 0 0 0 21 0 2124.1328 P30084 P30084 158 178 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3 2.5256E-14 151.54 By matching By MS/MS By MS/MS 6.83 0.373 1 5 1 2 3 35169000 549820 7106100 27513000 1080 709 1137 4667;4668;4669;4670;4671;4672 3877;3878;3879;3880 3880 4 1185000 4080300 4759400 AQFEGIVTDLIR MDSSGPKHLNMKLTRAQFEGIVTDLIRRTI LTRAQFEGIVTDLIRRTIAPCQKAMQDAEV R A Q I R R 1 1 0 1 0 1 1 1 0 2 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1360.7351 P38646 P38646 349 360 HSPA9 Stress-70 protein, mitochondrial yes yes 2 1.426E-05 155.42 By MS/MS By MS/MS By MS/MS 3 0.632 1 3 1 1 2 2 31519000 4559200 7303100 19657000 1081 774 1138 4673;4674;4675;4676;4677 3881;3882;3883 3883 3 5260300 3144300 3772100 AQFFVEDASTASALK SVPFTPIEFHYENTRAQFFVEDASTASALK AQFFVEDASTASALKAVNYKILDRENRRIS R A Q L K A 4 0 0 1 0 1 1 0 0 0 1 1 0 2 0 2 1 0 0 1 0 0 15 0 1583.7831 Q9UBU9 Q9UBU9 159 173 NXF1 Nuclear RNA export factor 1 yes yes 2 2.3189E-07 167.6 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 31944000 0 9458700 22485000 1082 2136 1139 4678;4679;4680 3884;3885 3885 2 0 3824100 4361000 AQGLEVALTDLQSSR ______________________________ AQGLEVALTDLQSSRNNVRHHTEEITVDHL M A Q S R N 2 1 0 1 0 2 1 1 0 0 3 0 0 0 0 2 1 0 0 1 0 0 15 0 1586.8264 O43548 O43548 2 16 TGM5 Protein-glutamine gamma-glutamyltransferase 5 yes yes 2 0.00019961 114.82 By MS/MS 5.4 2.06 1 1 1 1 1 5 2609500 2609500 0 0 1083 201 1140 4681;4682;4683;4684;4685 3886;3887 3887 1 2235000 0 0 AQHEDQVEQYK REFESRLADALQELRAQHEDQVEQYKKELE QELRAQHEDQVEQYKKELEKTYSAKLDNAR R A Q Y K K 1 0 0 1 0 3 2 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1373.6212 P02545 P02545 250 260 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 0.010462 90.306 By matching By MS/MS 3 1.29 1 1 2 1 1 2 4 63717000 0 700950 63016000 1084 387 1141 4686;4687;4688;4689;4690;4691 3888;3889 3889 2 0 320900 12131000 AQHEDQVEQYKK REFESRLADALQELRAQHEDQVEQYKKELE ELRAQHEDQVEQYKKELEKTYSAKLDNARQ R A Q K K E 1 0 0 1 0 3 2 0 1 0 0 2 0 0 0 0 0 0 1 1 0 0 12 1 1501.7161 P02545 P02545 250 261 LMNA Prelamin-A/C;Lamin-A/C yes yes 3 0.00097143 101.89 By matching By MS/MS By MS/MS 2.43 1.29 2 2 2 1 1 3 3 92663000 456850 21965000 70242000 1085 387 1142 4692;4693;4694;4695;4696;4697;4698 3890;3891;3892;3893;3894 3894 5 456850 9418900 13622000 AQHIGSCPAYPAK A Q A K 3 0 0 0 1 1 0 1 1 1 0 1 0 0 2 1 0 0 1 0 0 0 13 0 1398.6714 REV__O95395 yes yes 2 0.0070448 94.692 By MS/MS By MS/MS By matching 3.75 0.433 1 3 2 1 1 26440000 15436000 8001300 3003200 + 1086 2326 1143 4699;4700;4701;4702 3895;3896 3895 2 12043000 3410900 490510 AQHPDYSFGELSR SGYILFSSEMRAVIKAQHPDYSFGELSRLV IKAQHPDYSFGELSRLVGTEWRNLETAKKA K A Q S R L 1 1 0 1 0 1 1 1 1 0 1 0 0 1 1 2 0 0 1 0 0 0 13 0 1505.6899 Q86U86 Q86U86 1399 1411 PBRM1 Protein polybromo-1 yes yes 3 0.0072987 71.933 By MS/MS 1 0 1 1 17603000 0 0 17603000 1087 1545 1144 4703 3897 3897 1 0 0 3792800 AQHQQALSSLELLNVLFR KVTENLRVLGEAQTKAQHQQALSSLELLNV QQALSSLELLNVLFRTCKHEKLTLDLTVLL K A Q F R T 2 1 1 0 0 3 1 0 1 0 5 0 0 1 0 2 0 0 0 1 0 0 18 0 2066.1273 Q9BQG0 Q9BQG0 1077 1094 MYBBP1A Myb-binding protein 1A yes yes 3 9.7471E-24 193.32 By MS/MS 1.5 0.5 1 1 2 17818000 0 0 17818000 1088 1885 1145 4704;4705 3898;3899 3899 2 0 0 3918900 AQHSENDLEEVGK QSQLTAFFLEALDFRAQHSENDLEEVGKTE FRAQHSENDLEEVGKTENCIIDCLVAMVVK R A Q G K T 1 0 1 1 0 1 3 1 1 0 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1454.6638 Q9H583 Q9H583 1879 1891 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3 0.040673 46.408 By MS/MS 1 0 1 1 0 0 0 0 1089 1984 1146 4706 3900 3900 1 0 0 0 AQHVFQHAVPQEGKPITNQK HDLLDICLKRATVQRAQHVFQHAVPQEGKP QHAVPQEGKPITNQKSSGRCWIFSCLNVMR R A Q Q K S 2 0 1 0 0 4 1 1 2 1 0 2 0 1 2 0 1 0 0 2 0 0 20 1 2256.1763 Q13867 Q13867 49 68 BLMH Bleomycin hydrolase yes yes 4 0.0014516 60.09 By MS/MS By MS/MS 4.6 3.01 1 1 1 1 1 2 3 24504000 11633000 0 12871000 1090 1272 1147 4707;4708;4709;4710;4711 3901;3902;3903 3901 3 17009000 0 2344100 AQIAGYLYGVSPPDNPQVK PKNVLKKFICISDLRAQIAGYLYGVSPPDN GYLYGVSPPDNPQVKEIRCIVMVPQWGTHQ R A Q V K E 2 0 1 1 0 2 0 2 0 1 1 1 0 0 3 1 0 0 2 2 0 0 19 0 2016.0316 Q6P2Q9 Q6P2Q9 2122 2140 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 5.8693E-09 132.97 By MS/MS By MS/MS 1 0 2 1 1 26091000 0 14329000 11762000 1091 1490 1148 4712;4713 3904;3905;3906 3904 3 0 7003700 2534300 AQIDNLTR HQLTMQKEEDTSGYRAQIDNLTRENRSLSE EDTSGYRAQIDNLTRENRSLSEEIKRLKNT R A Q T R E 1 1 1 1 0 1 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 929.49304 P15924 P15924 1393 1400 DSP Desmoplakin yes yes 2 0.032544 77.282 By MS/MS By MS/MS 5.5 4.5 1 1 1 1 11812000 4397600 7414200 0 1092 572 1149 4714;4715 3907;3908 3908 2 8011500 3624000 0 AQIEDTLRR GGKAPRVATSSKVTRAQIEDTLRRDHQLRE SSKVTRAQIEDTLRRDHQLREAPDTAEKAK R A Q R R D 1 2 0 1 0 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 1 1100.5938 Q96CT7 Q96CT7 98 106 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 0.0010827 128.12 By MS/MS By matching 6 0 2 1 1 12351000 0 7212000 5139100 1093 1761 1150 4716;4717 3909 3909 1 0 2496500 768860 AQIEELKNEK QKESEKLESVNAELKAQIEELKNEKQHLIY NAELKAQIEELKNEKQHLIYMLNLHRPTCI K A Q E K Q 1 0 1 0 0 1 3 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 10 1 1200.635 P18847 P18847 130 139 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes yes 2 0.0077947 110.76 By MS/MS 7 0 1 1 2182300 0 0 2182300 1094 602 1151 4718 3910 3910 1 0 0 387240 AQIFANTVDNAR VRDWSHYFKIIEDLRAQIFANTVDNARIVL DLRAQIFANTVDNARIVLQIDNARLAADDF R A Q A R I 3 1 2 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1318.663 P05783 P05783 138 149 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 5.6912E-89 253.98 By MS/MS By MS/MS By MS/MS 4.6 2.15 2 2 2 3 5 2 2 1 1 2 9 9 2145200000 64484000 712440000 1368300000 1095 436 1152 4719;4720;4721;4722;4723;4724;4725;4726;4727;4728;4729;4730;4731;4732;4733;4734;4735;4736;4737;4738 3911;3912;3913;3914;3915;3916;3917;3918;3919;3920;3921;3922;3923;3924;3925;3926;3927;3928;3929;3930;3931;3932;3933 3918 23 51606000 206360000 205940000 AQIHDLVLVGGSTR LEPVEKALRDAKLDKAQIHDLVLVGGSTRI KAQIHDLVLVGGSTRIPKVQKLLQDFFNGR K A Q T R I 1 1 0 1 0 1 0 2 1 1 2 0 0 0 0 1 1 0 0 2 0 0 14 0 1464.8049 P0DMV9;P0DMV8 P0DMV9 329 342 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 8.7989E-05 157.03 By MS/MS By MS/MS By MS/MS 3.67 0.943 4 2 2 1 3 205400000 32035000 54925000 118440000 1096 501 1153 4739;4740;4741;4742;4743;4744 3934;3935;3936;3937;3938;3939 3937 6 36961000 23415000 21828000 AQILEMR TQKGLYRIGFIEEVKAQILEMRYTKGKLSM IGFIEEVKAQILEMRYTKGKLSMFVLLPSH K A Q M R Y 1 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 Q96P63 Q96P63 240 246 SERPINB12 Serpin B12 yes yes 2 0.019131 104.11 By MS/MS By matching 7 1.41 2 1 2 1 22801000 21040000 0 1760700 1097 1816 1154 4745;4746;4747 3940;3941 3940 2 22321000 0 263420 AQILPIR ______________________________ ______________________________ M A Q I R F 1 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 7 0 809.51232 Q00610 Q00610 2 8 CLTC Clathrin heavy chain 1 yes yes 1;2 0.0055662 118.06 By matching By MS/MS By MS/MS 3.94 3.31 5 3 3 2 1 2 3 6 7 78787000 2919200 15915000 59952000 1098 1125 1155 4748;4749;4750;4751;4752;4753;4754;4755;4756;4757;4758;4759;4760;4761;4762;4763 3942;3943;3944;3945;3946;3947;3948;3949 3947 7 3003700 11041000 14752000 AQIMNVSWSADHR IKAIPRFNQKGEVYKAQIMNVSWSADHRVI YKAQIMNVSWSADHRVIDGATMSRFSNLWK K A Q H R V 2 1 1 1 0 1 0 0 1 1 0 0 1 0 0 2 0 1 0 1 0 0 13 0 1513.7096 P11182 P11182 441 453 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 3 0.00094424 100.02 By matching By MS/MS By MS/MS 4.4 0.49 3 2 1 2 2 29426000 6063000 4880500 18483000 1099 519 1156 4764;4765;4766;4767;4768 3950;3951;3952 3952 3 4730200 1347000 2801700 AQKDEEKMEIQEIQLK AADESERGMKVIESRAQKDEEKMEIQEIQL QKDEEKMEIQEIQLKEAKHIAEDADRKYEE R A Q L K E 1 0 0 1 0 3 4 0 0 2 1 3 1 0 0 0 0 0 0 0 0 0 16 2 1958.9983 P09493 P09493 134 149 TPM1 Tropomyosin alpha-1 chain yes yes 3;4 0.007808 62.709 By MS/MS By matching 6 0 4 2 2 33420000 0 25174000 8245600 + 1100 485 1157 4769;4770;4771;4772 3953;3954 3953 2 0 8714500 1233600 AQLADSFHLQQFFR LSRRNALHERAMRRRAQLADSFHLQQFFRD RAQLADSFHLQQFFRDSDELKSWVNEKMKT R A Q F R D 2 1 0 1 0 3 0 0 1 0 2 0 0 3 0 1 0 0 0 0 0 0 14 0 1706.8529 Q13813 Q13813 567 580 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.4087E-34 211.84 By MS/MS By MS/MS 1.62 0.696 4 3 1 3 5 77779000 0 15895000 61883000 1101 1268 1158 4773;4774;4775;4776;4777;4778;4779;4780 3955;3956;3957;3958;3959;3960 3959 6 0 7589400 13389000 AQLEPVASPAK INAIKDYELQLVTYKAQLEPVASPAKKPKV VTYKAQLEPVASPAKKPKVQSGSESVIQEY K A Q A K K 3 0 0 0 0 1 1 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 11 0 1109.6081 Q15149 Q15149 1428 1438 PLEC Plectin yes yes 2 0.014478 87.298 By MS/MS 1 0 1 1 10732000 0 10732000 0 1102 1348 1159 4781 3961 3961 1 0 5245700 0 AQLEQSVEENKER LQSLEQEKGRWRVEKAQLEQSVEENKERME EKAQLEQSVEENKERMEKLEGYWGEAQSLC K A Q E R M 1 1 1 0 0 2 4 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 13 1 1558.7587 Q96SB3 Q96SB3 707 719 PPP1R9B Neurabin-2 yes yes 3 0.0091115 71.976 By MS/MS 2 0 1 1 3457700 0 3457700 0 1103 1831 1160 4782 3962 3962 1 0 1557100 0 AQLGLGHSYSR FHNLVKGLTDLSACKAQLGLGHSYSRAKVK SACKAQLGLGHSYSRAKVKFNVNRVDNMII K A Q S R A 1 1 0 0 0 1 0 2 1 0 2 0 0 0 0 2 0 0 1 0 0 0 11 0 1187.6047 O00567 O00567 144 154 NOP56 Nucleolar protein 56 yes yes 2 0.0087392 93.667 By matching By MS/MS By MS/MS 3.4 0.49 3 2 1 2 2 30825000 4614400 3730400 22480000 1104 130 1161 4783;4784;4785;4786;4787 3963;3964;3965 3963 3 5324000 1590300 4272900 AQLLQPTLEINPR HFLRMQQLAKTQEERAQLLQPTLEINPRHA ERAQLLQPTLEINPRHALIKKLNQLRASEP R A Q P R H 1 1 1 0 0 2 1 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 13 0 1491.8409 Q12931 Q12931 635 647 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 3.5316E-26 196.27 By matching By MS/MS By MS/MS 3 0 3 1 1 1 11071000 2229200 8842000 0 1105 1212 1162 4788;4789;4790 3966;3967 3967 2 2572000 3769300 0 AQLMADFQAGR LWEVMQSDLIPEEQRAQLMADFQAGRVTKE EEQRAQLMADFQAGRVTKERMIIIIIEIIE R A Q G R V 3 1 0 1 0 2 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 11 0 1206.5815 Q15149 Q15149 3739 3749 PLEC Plectin yes yes 2 0.00080326 116.37 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 14134000 0 14134000 0 1106 1348 1163 4791;4792;4793 3968;3969;3970 3968 3 0 6777900 0 AQLPVMVIVTPQDR VEEQVEIRSGFLAARAQLPVMVIVTPQDRK RAQLPVMVIVTPQDRKNSVWTQDGPSAQIL R A Q D R K 1 1 0 1 0 2 0 0 0 1 1 0 1 0 2 0 1 0 0 3 0 0 14 0 1565.8599 Q9H6R4 Q9H6R4 942 955 NOL6 Nucleolar protein 6 yes yes 2 0.0085678 83.182 By MS/MS 1.5 0.5 1 1 2 12650000 0 0 12650000 1107 1988 1164 4794;4795 3971 3971 1 0 0 2812800 AQLSDYSDIVTTLDLAPPTK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL YSDIVTTLDLAPPTKKLMMWKETGGVEKLF R A Q T K K 2 0 0 3 0 1 0 0 0 1 3 1 0 0 2 2 3 0 1 1 0 0 20 0 2147.0998 O60216 O60216 339 358 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 2.9598E-23 185.14 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 20911000 0 2134300 18777000 1108 219 1165 4796;4797;4798;4799 3972;3973;3974 3972 3 0 961090 3733900 AQLSDYSDIVTTLDLAPPTKK LIVDSVKELDSKTIRAQLSDYSDIVTTLDL SDIVTTLDLAPPTKKLMMWKETGGVEKLFS R A Q K K L 2 0 0 3 0 1 0 0 0 1 3 2 0 0 2 2 3 0 1 1 0 0 21 1 2275.1947 O60216 O60216 339 359 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2;3 5.5229E-08 100.19 By MS/MS By MS/MS 2.5 0.5 2 2 1 3 36346000 0 6177900 30168000 1109 219 1166 4800;4801;4802;4803 3975;3976;3977;3978 3975 4 0 2782000 6162300 AQLSQYFDAVK YKELRKLEVEYEQKRAQLSQYFDAVKNAQH EQKRAQLSQYFDAVKNAQHVEVESIPLPDM R A Q V K N 2 0 0 1 0 2 0 0 0 0 1 1 0 1 0 1 0 0 1 1 0 0 11 0 1268.6401 Q9Y2W2 Q9Y2W2 119 129 WBP11 WW domain-binding protein 11 yes yes 2 0.029937 78.655 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 15284000 0 7174600 8109800 1110 2253 1167 4804;4805;4806 3979;3980 3979 2 0 3161000 1572900 AQLSSSLQEGVMQK PSCEVNRECSVFLSKAQLSSSLQEGVMQKF KAQLSSSLQEGVMQKFNGHDALPFIPADKL K A Q Q K F 1 0 0 0 0 3 1 1 0 0 2 1 1 0 0 3 0 0 0 1 0 0 14 0 1504.7555 O96028 O96028 51 64 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 2 0.006041 86.911 By matching By matching By MS/MS 2 0.707 1 2 1 2 1 1 34177000 23729000 3579100 6869000 1111 355 1168 4807;4808;4809;4810 3981 3981 1 24771000 1611700 1332300 AQMVQEDLEK ARQKKESEAVEWQQKAQMVQEDLEKTRAEL EWQQKAQMVQEDLEKTRAELKTAMSTPHVA K A Q E K T 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 10 0 1189.5649 P26038 P26038 449 458 MSN Moesin yes yes 2 0.017878 84.213 By matching By MS/MS 3 0 2 1 1 15166000 4038600 11127000 0 1112 664 1169 4811;4812 3982 3982 1 4659600 4743400 0 AQNDLIWNIK KKEKDKDSKLEKALKAQNDLIWNIKDELKK EKALKAQNDLIWNIKDELKKVCSTNDLKEL K A Q I K D 1 0 2 1 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1213.6455 P09874 P09874 240 249 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.035401 76.605 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 45345000 0 4418900 40926000 1113 492 1170 4813;4814;4815;4816 3983;3984 3984 2 0 1989900 8831600 AQNDLIWNIKDELK KKEKDKDSKLEKALKAQNDLIWNIKDELKK KAQNDLIWNIKDELKKVCSTNDLKELLIFN K A Q L K K 1 0 2 2 0 1 1 0 0 2 2 2 0 0 0 0 0 1 0 0 0 0 14 1 1698.8941 P09874 P09874 240 253 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00011654 146.5 By MS/MS By MS/MS 2.2 1.08 3 4 1 2 3 7 266780000 0 8467400 258310000 1114 492 1171 4817;4818;4819;4820;4821;4822;4823;4824;4825;4826 3985;3986;3987;3988;3989;3990;3991;3992 3987 8 0 3993300 56734000 AQNDLIWNIKDELKK KKEKDKDSKLEKALKAQNDLIWNIKDELKK AQNDLIWNIKDELKKVCSTNDLKELLIFNK K A Q K K V 1 0 2 2 0 1 1 0 0 2 2 3 0 0 0 0 0 1 0 0 0 0 15 2 1826.989 P09874 P09874 240 254 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 0.00016531 151.7 By MS/MS By MS/MS 2.59 1.29 4 5 4 2 2 6 11 327250000 0 51626000 275630000 1115 492 1172 4827;4828;4829;4830;4831;4832;4833;4834;4835;4836;4837;4838;4839;4840;4841;4842;4843 3993;3994;3995;3996;3997;3998;3999;4000;4001;4002;4003;4004;4005;4006 3995 14 0 22767000 59604000 AQNISSNANMLR PSAAPIKQVEEKPQRAQNISSNANMLRKGP PQRAQNISSNANMLRKGPAEDMSSKLNQAR R A Q L R K 2 1 3 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 0 12 0 1317.6459 Q14008 Q14008 1442 1453 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 1.3555E-05 155.84 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 75667000 3067000 19568000 53032000 1116 1279 1173 4844;4845;4846 4007;4008;4009 4008 3 3067000 9564700 11427000 AQNSELASTANMLR LERIARLEEKVKTLKAQNSELASTANMLRE KAQNSELASTANMLREQVAQLKQKVMNHVN K A Q L R E 3 1 2 0 0 1 1 0 0 0 2 0 1 0 0 2 1 0 0 0 0 0 14 0 1504.7304 P05412 P05412 289 302 JUN Transcription factor AP-1 yes yes 2 2.8019E-34 212.82 By matching By MS/MS By MS/MS 5.83 1.07 1 1 2 2 1 3 2 36229000 3719900 11915000 20593000 1117 433 1174 4847;4848;4849;4850;4851;4852 4010;4011;4012;4013 4010 4 2902200 4360900 3355000 AQNTWGCGNSLR GAGATHSPPTDLVWKAQNTWGCGNSLRTAL VWKAQNTWGCGNSLRTALINSTGEEVAMRK K A Q L R T 1 1 2 0 1 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 0 12 0 1362.6099 P02545 P02545 516 527 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.4664E-08 172.69 By MS/MS 3 0 1 1 34393000 0 0 34393000 1118 387 1175 4853 4014 4014 1 0 0 6670600 AQPLEDLAGFTELSETSGHTQESLTAGK EEEPSRRRPRAPKEKAQPLEDLAGFTELSE SETSGHTQESLTAGKATKIPCESPPLEVVD K A Q G K A 3 0 0 1 0 2 4 3 1 0 4 1 0 1 1 3 4 0 0 0 0 0 28 0 2916.3989 P46013 P46013 2673 2700 MKI67 Antigen KI-67 yes yes 3 1.5836E-38 143.05 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 24598000 0 5204700 19393000 1119 821 1176 4854;4855;4856;4857 4015;4016;4017 4017 3 0 2377300 4290800 AQPLEDLAGLK ASVTGSKRHPKTKEKAQPLEDLAGLKELFQ TKEKAQPLEDLAGLKELFQTPVCTDKPTTH K A Q L K E 2 0 0 1 0 1 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 11 0 1153.6343 P46013 P46013 1461 1471 MKI67 Antigen KI-67 yes no 2 0.061335 64.04 By MS/MS 2.5 1.12 1 1 1 1 4 37920000 0 0 37920000 1120 821 1177 4858;4859;4860;4861 4018 4018 0 0 0 7971800 AQPLSLEELLAK SKKDEEDEHGDKKPKAQPLSLEELLAKKKA KPKAQPLSLEELLAKKKAEEEAEAKPKFLS K A Q A K K 2 0 0 0 0 1 2 0 0 0 4 1 0 0 1 1 0 0 0 0 0 0 12 0 1310.7446 Q9BUQ8 Q9BUQ8 139 150 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.018807 85.533 By MS/MS 2 0.816 1 1 1 3 37050000 0 0 37050000 1121 1909 1178 4862;4863;4864 4019 4019 1 0 0 8156300 AQPSASLGVGYR TYRAQPSVSLGAAYRAQPSASLGVGYRTQP AYRAQPSASLGVGYRTQPMTAQAASYRAQP R A Q Y R T 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1204.62 Q96PK6 Q96PK6 251 262 RBM14 RNA-binding protein 14 yes yes 2 0.00011938 138.4 By MS/MS 2 0.816 1 1 1 3 86231000 0 0 86231000 1122 1818 1179 4865;4866;4867 4020 4020 1 0 0 17025000 AQPSVSLGAAYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP TYRAQPSVSLGAAYRAQPSASLGVGYRTQP R A Q Y R A 3 1 0 0 0 1 0 1 0 0 1 0 0 0 1 2 0 0 1 1 0 0 12 0 1218.6357 Q96PK6 Q96PK6 239 250 RBM14 RNA-binding protein 14 yes yes 2 1.7958E-05 153.24 By MS/MS 3 0 1 1 67937000 0 0 67937000 1123 1818 1180 4868 4021 4021 1 0 0 13177000 AQPSVSLGAPYR GYRTQPMTAQAASYRAQPSVSLGAPYRGQL SYRAQPSVSLGAPYRGQLASPSSQSAAASS R A Q Y R G 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 2 0 0 1 1 0 0 12 0 1244.6513 Q96PK6 Q96PK6 275 286 RBM14 RNA-binding protein 14 yes yes 2 1.4847E-05 155.07 By matching By MS/MS By MS/MS 3.5 0.866 3 1 1 1 2 68718000 9191700 4715600 54811000 1124 1818 1181 4869;4870;4871;4872 4022;4023;4024;4025 4023 4 10605000 2010200 10272000 AQPTPSSSATQSKPTPVKPNYALK ______________________________ TQSKPTPVKPNYALKFTLAGHTKAVSSVKF R A Q L K F 3 0 1 0 0 2 0 0 0 0 1 3 0 0 5 4 3 0 1 1 0 0 24 2 2497.3177 P61964 P61964 15 38 WDR5 WD repeat-containing protein 5 yes yes 3;4 7.8078E-12 101.94 By MS/MS By MS/MS 5.43 0.728 1 2 4 3 4 131730000 0 28699000 103040000 1125 1001 1182 4873;4874;4875;4876;4877;4878;4879 4026;4027;4028;4029;4030;4031 4030 6 0 9744000 14924000 AQPVPHYGVPFKPQIPEAR PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI PHYGVPFKPQIPEARTVEICPFSFDSRDKE K A Q A R T 2 1 0 0 0 2 1 1 1 1 0 1 0 1 5 0 0 0 1 2 0 0 19 1 2130.1374 Q9ULW0 Q9ULW0 513 531 TPX2 Targeting protein for Xklp2 yes yes 4 0.02906 37.112 By MS/MS 2 0 1 1 8264100 0 0 8264100 1126 2193 1183 4880 4032 4032 1 0 0 1867500 AQQAADKYLYVDK ______________________________ ______________________________ M A Q D K N 3 0 0 2 0 2 0 0 0 0 1 2 0 0 0 0 0 0 2 1 0 0 13 1 1511.762 P35579 P35579 2 14 MYH9 Myosin-9 yes yes 2 6.4166E-18 193.23 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 178840000 0 155440000 23400000 1127 752 1184 4881;4882;4883;4884 4033;4034;4035;4036 4033 4 0 75500000 5041800 AQQAADKYLYVDKNFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA M A Q A K K 7 0 3 3 0 3 0 0 0 1 2 3 0 1 1 0 0 1 2 1 0 0 28 2 3165.5883 P35579 P35579 2 29 MYH9 Myosin-9 yes yes 3 1.0734E-39 152.99 By MS/MS 1.5 0.5 1 1 2 17965000 0 17965000 0 1128 752 1185 4885;4886 4037;4038 4037 2 0 8544300 0 AQQEDALAQQAFEEAR QRLDGMGCLEFDEERAQQEDALAQQAFEEA QQEDALAQQAFEEARRRTREFEDRDRSHRE R A Q A R R 5 1 0 1 0 4 3 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 16 0 1803.8388 Q13951 Q13951 132 147 CBFB Core-binding factor subunit beta yes yes 2 1.8851E-59 229.97 By matching By MS/MS 6.33 0.471 2 1 1 2 24376000 0 1749900 22626000 1129 1277 1186 4887;4888;4889 4039 4039 1 0 605750 3662500 AQQELEEQTRR ELMERLKQIEEQTKKAQQELEEQTRRALEL QTKKAQQELEEQTRRALELEQERKRAQSEA K A Q R R A 1 2 0 0 0 3 3 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 11 1 1386.6852 P26038 P26038 361 371 MSN Moesin yes yes 3 5.7113E-05 130.94 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 13110000 1331500 4678400 7100100 1130 664 1187 4890;4891;4892;4893 4040;4041 4040 2 1536200 1994400 1319000 AQQIHSQTSQQYPLYDLDLGK LKKSLLATMKTELQKAQQIHSQTSQQYPLY QTSQQYPLYDLDLGKFGEKVTQLTDRWQRI K A Q G K F 1 0 0 2 0 5 0 1 1 1 3 1 0 0 1 2 1 0 2 0 0 0 21 0 2432.1972 P15924 P15924 835 855 DSP Desmoplakin yes yes 3 8.3025E-19 151.96 By MS/MS By MS/MS 5.4 3.01 2 1 1 1 1 1 1 1 1 9 1 78820000 54700000 24119000 0 1131 572 1188 4894;4895;4896;4897;4898;4899;4900;4901;4902;4903 4042;4043;4044;4045;4046;4047;4048;4049 4047 8 59592000 11789000 0 AQQNNVEHKVETFSGVYK VKLDGSRLIKVHLDKAQQNNVEHKVETFSG NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K A Q Y K K 1 0 2 0 0 2 2 1 1 0 0 2 0 1 0 1 1 0 1 3 0 0 18 1 2077.0229 P62081 P62081 161 178 RPS7 40S ribosomal protein S7 yes yes 2;3;4 5.6548E-134 278.16 By MS/MS By MS/MS 7 0 6 3 3 198930000 0 118730000 80199000 1132 1005 1189 4904;4905;4906;4907;4908;4909 4050;4051;4052;4053;4054;4055 4054 6 0 68174000 14231000 AQQNNVEHKVETFSGVYKK VKLDGSRLIKVHLDKAQQNNVEHKVETFSG NVEHKVETFSGVYKKLTGKDVNFEFPEFQL K A Q K K L 1 0 2 0 0 2 2 1 1 0 0 3 0 1 0 1 1 0 1 3 0 0 19 2 2205.1178 P62081 P62081 161 179 RPS7 40S ribosomal protein S7 yes yes 3;4;5 0.00012874 90.654 By MS/MS 7 0 3 3 55177000 0 55177000 0 1133 1005 1190 4910;4911;4912 4056;4057;4058 4056 3 0 31683000 0 AQQVSQGLDVLTAK LRARGQGSSPVAMQKAQQVSQGLDVLTAKV KAQQVSQGLDVLTAKVENAARKLEAMTNSK K A Q A K V 2 0 0 1 0 3 0 1 0 0 2 1 0 0 0 1 1 0 0 2 0 0 14 0 1456.7886 P18206 P18206 353 366 VCL Vinculin yes yes 2 0.00038804 147.91 By MS/MS 9.5 0.5 1 1 2 5785000 5785000 0 0 1134 595 1191 4913;4914 4059 4059 1 7385100 0 0 AQSLLQLWK RWTQVNQAIADQLQKAQSLLQLWKAYSNAH ADQLQKAQSLLQLWKAYSNAHGEAAARLKQ K A Q W K A 1 0 0 0 0 2 0 0 0 0 3 1 0 0 0 1 0 1 0 0 0 0 9 0 1085.6233 Q8WXH0 Q8WXH0 5380 5388 SYNE2 Nesprin-2 yes yes 2 0.043929 73.26 By MS/MS 1 0 1 1 1677600 0 1677600 0 1135 1696 1192 4915 4060 4060 1 0 820000 0 AQSLVISPPAPSPR SGKQESGSEIHVEVKAQSLVISPPAPSPRK KAQSLVISPPAPSPRKTPVASDQRRRSCKT K A Q P R K 2 1 0 0 0 1 0 0 0 1 1 0 0 0 4 3 0 0 0 1 0 0 14 0 1418.7882 P46013 P46013 573 586 MKI67 Antigen KI-67 yes yes 2 0.01304 69.864 By MS/MS 2 0 1 1 0 0 0 0 1136 821 1193 4916 4061 4061 1 0 0 0 AQSSQDAVSSMNLFDLGGQYLR TTGKHKGYGFIEYEKAQSSQDAVSSMNLFD VSSMNLFDLGGQYLRVGKAVTPPMPLLTPA K A Q L R V 2 1 1 2 0 3 0 2 0 0 3 0 1 1 0 4 0 0 1 1 0 0 22 0 2386.1223 Q9UHX1 Q9UHX1 277 298 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2;3 6.4741E-195 300.51 By MS/MS By MS/MS 3.83 0.687 2 3 1 1 5 64466000 0 16643000 47823000 1137 2158 1194 4917;4918;4919;4920;4921;4922 4062;4063;4064;4065 4062 4 0 5523100 8410300 AQTEGINISEEALNHLGEIGTK MLYTPQEMKQIIKIRAQTEGINISEEALNH ISEEALNHLGEIGTKTTLRYSVQLLTPANL R A Q T K T 2 0 2 0 0 1 4 3 1 3 2 1 0 0 0 1 2 0 0 0 0 0 22 0 2323.1656 Q9Y265 Q9Y265 379 400 RUVBL1 RuvB-like 1 yes yes 2;3 3.3718E-64 219.58 By MS/MS 4 0.707 1 2 1 4 86475000 0 0 86475000 1138 2234 1195 4923;4924;4925;4926 4066;4067 4067 2 0 0 14119000 AQTLPTSVVTITSESSPGK HEVSASTQSTPASSRAQTLPTSVVTITSES PTSVVTITSESSPGKREKDKEKDKEKRFSL R A Q G K R 1 0 0 0 0 1 1 1 0 1 1 1 0 0 2 4 4 0 0 2 0 0 19 0 1901.9946 Q01082 Q01082 2326 2344 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 7.1906E-09 146.96 By MS/MS 1 0 1 1 4667300 0 4667300 0 1139 1128 1196 4927 4068 4068 1 0 2281300 0 AQTLPTSVVTITSESSPGKR HEVSASTQSTPASSRAQTLPTSVVTITSES TSVVTITSESSPGKREKDKEKDKEKRFSLF R A Q K R E 1 1 0 0 0 1 1 1 0 1 1 1 0 0 2 4 4 0 0 2 0 0 20 1 2058.0957 Q01082 Q01082 2326 2345 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 1.5894E-11 118.52 By MS/MS By MS/MS 1 0 2 1 1 49135000 0 19206000 29929000 1140 1128 1197 4928;4929 4069;4070 4069 2 0 9387600 6448700 AQVADVVVSR DPATHRQKLYTLQDKAQVADVVVSRWLRVT TLQDKAQVADVVVSRWLRVTVAGGVHISGL K A Q S R W 2 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 10 0 1042.5771 P49327 P49327 1073 1082 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.050681 72.643 By MS/MS 1 0 1 1 6116400 0 0 6116400 1141 853 1198 4930 4071 4071 1 0 0 1317900 AQVEQELTTLR MEKHKKFAEQTLRQKAQVEQELTTLRLQLE LRQKAQVEQELTTLRLQLEETDHQKNLLDE K A Q L R L 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 11 0 1286.683 Q15149 Q15149 2319 2329 PLEC Plectin yes yes 2 2.4052E-13 175.73 By MS/MS By MS/MS 1 0 2 1 1 67962000 0 34451000 33511000 1142 1348 1199 4931;4932 4072;4073 4073 2 0 16839000 7220400 AQVIYTR ELLSKGLIKLVSKHRAQVIYTRNTKGGDAP IKLVSKHRAQVIYTRNTKGGDAPAAGEDA_ R A Q T R N 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 1 1 0 0 7 0 849.47085 P62851 P62851 105 111 RPS25 40S ribosomal protein S25 yes yes 2 0.01682 108.24 By MS/MS 8 1.41 1 1 1 1 1 5 15445000 0 15445000 0 1143 1039 1200 4933;4934;4935;4936;4937 4074 4074 1 0 11846000 0 AQVPSSLGSLFNK LNLAENPAMTRELLRAQVPSSLGSLFNKKE LRAQVPSSLGSLFNKKENKEVILKLLVIFE R A Q N K K 1 0 1 0 0 1 0 1 0 0 2 1 0 1 1 3 0 0 0 1 0 0 13 0 1346.7194 Q9UH62 Q9UH62 283 295 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.072937 64.439 By MS/MS 5 0 1 1 9660600 0 0 9660600 1144 2147 1201 4938 4075 4075 1 0 0 1347500 AQVQLQLFK EEADRYQRLKDEVVRAQVQLQLFKLYHNEV KDEVVRAQVQLQLFKLYHNEVEIEKLNKEL R A Q F K L 1 0 0 0 0 3 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 9 0 1073.6233 Q14683 Q14683 219 227 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0023247 104.45 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 65959000 0 26804000 39155000 1145 1312 1202 4939;4940;4941;4942 4076;4077;4078 4077 3 0 12410000 8693500 AQVSLLIR SVVAKFNASQLITQRAQVSLLIRRELTERA SQLITQRAQVSLLIRRELTERAKDFSLILD R A Q I R R 1 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 8 0 898.56 Q99623 Q99623 158 165 PHB2 Prohibitin-2 yes yes 2 0.0011669 119.56 By matching By MS/MS 6 0 2 1 1 15443000 4310200 0 11133000 1146 1855 1203 4943;4944 4079 4079 1 5739000 0 1665600 AQVTELEDELTAAEDAK ERACRVAEQAANDLRAQVTELEDELTAAED VTELEDELTAAEDAKLRLEVTVQALKTQHE R A Q A K L 4 0 0 2 0 1 4 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 17 0 1831.8687 Q7Z406 Q7Z406 1563 1579 MYH14 Myosin-14 yes yes 2 1.6678E-06 155.98 By MS/MS 1 0 1 1 5051100 0 5051100 0 1147 1531 1204 4945 4080 4080 1 0 2468900 0 AQYDELAR APKSQDLAKIMADIRAQYDELARKNREELD KIMADIRAQYDELARKNREELDKYWSQQIE R A Q A R K 2 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 8 0 964.46141 P05783 P05783 254 261 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 4.3521E-09 170.06 By MS/MS By MS/MS 3.78 1.69 1 1 2 2 2 1 3 6 661450000 0 147990000 513460000 1148 436 1205 4946;4947;4948;4949;4950;4951;4952;4953;4954 4081;4082;4083;4084;4085;4086;4087;4088 4083 8 0 39852000 76074000 AQYEDIANR NSRSLDMDSIIAEVKAQYEDIANRSRAEAE IIAEVKAQYEDIANRSRAEAESMYQIKYEE K A Q N R S 2 1 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1078.5043 CON__P05787;P05787 CON__P05787 265 273 KRT8 Keratin, type II cytoskeletal 8 no no 2 4.1206E-11 168.45 By MS/MS By MS/MS By MS/MS 4.08 1.64 1 1 3 3 2 2 1 4 4 5 915960000 37999000 213590000 664370000 + 1149 49 1206 4955;4956;4957;4958;4959;4960;4961;4962;4963;4964;4965;4966;4967 4089;4090;4091;4092;4093;4094;4095;4096;4097;4098 4091 10 31675000 67296000 109040000 AQYEDIAQK NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE IIAEVKAQYEDIAQKSKAEAESLYQSKYEE K A Q Q K S 2 0 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 9 0 1064.5138 P04264 P04264 356 364 KRT1 Keratin, type II cytoskeletal 1 yes yes 2 3.3738E-11 169.57 By MS/MS By MS/MS By MS/MS 5.85 2.95 3 3 4 2 3 3 4 4 3 5 16 7 11 13933000000 12383000000 240610000 1309700000 + 1150 413 1207 4968;4969;4970;4971;4972;4973;4974;4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999;5000;5001 4099;4100;4101;4102;4103;4104;4105;4106;4107;4108;4109;4110;4111;4112;4113;4114;4115;4116;4117;4118;4119;4120;4121;4122;4123;4124;4125 4109 27 13221000000 200070000 539360000 AQYEDIAQKSK NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE AEVKAQYEDIAQKSKAEAESLYQSKYEELQ K A Q S K A 2 0 0 1 0 2 1 0 0 1 0 2 0 0 0 1 0 0 1 0 0 0 11 1 1279.6408 P04264 P04264 356 366 KRT1 Keratin, type II cytoskeletal 1 yes yes 2;3 0.0052047 117.71 By MS/MS 6.67 4.03 1 1 1 3 10796000 10796000 0 0 + 1151 413 1208 5002;5003;5004 4126;4127 4126 2 9563600 0 0 AQYEEIANR NNRNLDLDSIIAEVKAQYEEIANRSRTEAE IIAEVKAQYEEIANRSRTEAESWYQTKYEE K A Q N R S 2 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1092.52 CON__P13647;P13647 CON__P13647 344 352 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.3017E-31 196.98 By MS/MS By MS/MS By MS/MS 5.69 2.8 2 2 3 2 4 3 2 2 3 3 12 5 9 1478700000 1257900000 12366000 208460000 + 1152 58 1209 5005;5006;5007;5008;5009;5010;5011;5012;5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023;5024;5025;5026;5027;5028;5029;5030 4128;4129;4130;4131;4132;4133;4134;4135;4136;4137;4138;4139;4140;4141;4142;4143;4144;4145;4146;4147;4148;4149 4136 22 1235800000 12463000 71903000 AQYEEIAQR NSRNLDLDSIIAEVKAQYEEIAQRSKEEAE IIAEVKAQYEEIAQRSKEEAEALYHSKYEE K A Q Q R S 2 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1106.5356 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;Q01546;CON__P35908;CON__P35908v2;P35908;CON__P19013;P19013 CON__P35908 360 368 KRT6A;KRT6C;KRT76;KRT2;KRT4 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 4 no no 2 1.1005E-16 180.18 By MS/MS By MS/MS By MS/MS 5.28 2.83 3 3 4 2 3 4 3 2 2 3 13 6 10 10630000000 8810300000 187240000 1632600000 + 1153 65;66;68;37;47;1135;61 1210 5031;5032;5033;5034;5035;5036;5037;5038;5039;5040;5041;5042;5043;5044;5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059 4150;4151;4152;4153;4154;4155;4156;4157;4158;4159;4160;4161;4162;4163;4164;4165;4166;4167;4168;4169;4170;4171;4172;4173;4174;4175;4176;4177;4178;4179;4180;4181;4182 4163 32 8843800000 163170000 621550000 AQYEQTLAELHR QERVERCAKEAEKTKAQYEQTLAELHRYTP KTKAQYEQTLAELHRYTPRYMEDMEQAFET K A Q H R Y 2 1 0 0 0 2 2 0 1 0 2 0 0 0 0 0 1 0 1 0 0 0 12 0 1457.7263 Q9UKS6 Q9UKS6 204 215 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes yes 3 0.0083866 74.237 By matching By MS/MS By MS/MS 2.8 1.6 2 1 1 1 1 1 3 60432000 12562000 8587300 39283000 1154 2183 1211 5060;5061;5062;5063;5064 4183;4184 4183 2 12562000 2213500 7378600 ARDDLITDLLNEAK QMSNLMNQARLKVLRARDDLITDLLNEAKQ RARDDLITDLLNEAKQRLSKVVKDTTRYQV R A R A K Q 2 1 1 3 0 0 1 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 14 1 1585.8312 P36543 P36543 86 99 ATP6V1E1 V-type proton ATPase subunit E 1 yes yes 2 1.1385E-07 107.39 By MS/MS 6 0 1 1 0 0 0 0 1155 761 1212 5065 4185 4185 1 0 0 0 AREDIFMETLK VEGMEDWKQDSQLQKAREDIFMETLKDIVE QLQKAREDIFMETLKDIVEYYNDSNGSHVL K A R L K D 1 1 0 1 0 0 2 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 11 1 1351.6806 P25311 P25311 92 102 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2;3 2.5705E-06 158.56 By MS/MS By matching By matching 5.67 2.94 2 1 2 2 2 2 1 1 3 2 16 1 1 126880000 126360000 310130 214480 1156 656 1213 5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076;5077;5078;5079;5080;5081;5082;5083 4186;4187;4188;4189;4190;4191;4192;4193;4194;4195 4189 10 107700000 248340 469100 ARFEELCSDLFR DSLFEGIDFYTSITRARFEELCSDLFRSTL ITRARFEELCSDLFRSTLEPVEKALRDAKL R A R F R S 1 2 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 12 1 1541.7297 P0DMV9;P0DMV8;P17066;P48741 P0DMV9 300 311 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 1.6817E-05 162.68 By MS/MS 3 0 1 1 13101000 0 0 13101000 1157 501;582 1214 5084 4196 4196 1 0 0 2540900 ARFEELNADLFR DSLYEGIDFYTSITRARFEELNADLFRGTL ITRARFEELNADLFRGTLDPVEKALRDAKL R A R F R G 2 2 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 12 1 1479.747 P54652;P11142 P11142 300 311 HSPA2;HSPA8 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein no no 2;3 1.0968E-129 238.92 By MS/MS By MS/MS 3 1.48 2 2 4 1 1 1 4 7 208410000 0 20233000 188180000 1158 517;930 1215 5085;5086;5087;5088;5089;5090;5091;5092;5093;5094;5095 4197;4198;4199;4200;4201 4201 4 0 8727200 36455000 ARHEVLLISAEQDKR SNQIKITGTKEGIEKARHEVLLISAEQDKR ARHEVLLISAEQDKRAVERLEVEKAFHPFI K A R K R A 2 2 0 1 0 1 2 0 1 1 2 1 0 0 0 1 0 0 0 1 0 0 15 2 1763.9642 Q00341 Q00341 208 222 HDLBP Vigilin yes yes 4 0.051211 43.454 By MS/MS 2 0 1 1 7252600 0 0 7252600 1159 1122 1216 5096 4202 4202 1 0 0 1638900 ARLEIEPEWAYGK RGWDEALLTMSKGEKARLEIEPEWAYGKKG EKARLEIEPEWAYGKKGQPDAKIPPNAKLT K A R G K K 2 1 0 0 0 0 3 1 0 1 1 1 0 0 1 0 0 1 1 0 0 0 13 1 1560.7936 Q00688 Q00688 188 200 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 0.047689 97.163 By MS/MS 6.5 0.5 1 1 2 23892000 0 0 23892000 1160 1126 1217 5097;5098 4203 4203 1 0 0 3737300 ARQEELYSELQAR LTGLSLLPLSEKAARARQEELYSELQARET ARARQEELYSELQARETFEKTPVEVPVGGF R A R A R E 2 2 0 0 0 2 3 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 13 1 1591.7954 Q15149 Q15149 3356 3368 PLEC Plectin yes yes 2;3 7.6011E-33 207.34 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 67881000 0 26238000 41643000 1161 1348 1218 5099;5100;5101;5102;5103 4204;4205;4206;4207 4207 4 0 12825000 9001000 ASAAVESFVTK ______________________________ ______________________________ M A S T K Q 3 0 0 0 0 0 1 0 0 0 0 1 0 1 0 2 1 0 0 2 0 0 11 0 1108.5764 P38935 P38935 2 12 IGHMBP2 DNA-binding protein SMUBP-2 yes yes 2 0.004511 92.538 By MS/MS 1.5 0.5 1 1 2 3370700 0 3370700 0 1162 776 1219 5104;5105 4208 4208 1 0 1555600 0 ASAEGPLLGPEAAPSGEGAGSK KVPEVTEKKNKKLKKASAEGPLLGPEAAPS LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL K A S S K G 5 0 0 0 0 0 3 5 0 0 2 1 0 0 3 3 0 0 0 0 0 0 22 0 1951.9487 Q9BRJ6 Q9BRJ6 22 43 C7orf50 Uncharacterized protein C7orf50 yes yes 2 9.9709E-20 134.88 By MS/MS By MS/MS 7 0 2 1 1 47696000 0 13978000 33718000 1163 1889 1220 5106;5107 4209;4210 4210 2 0 8026500 5983000 ASAELIEEEVAK VKLQGERVRGLKQQKASAELIEEEVAKLLK QQKASAELIEEEVAKLLKLKAQLGPDESKQ K A S A K L 3 0 0 0 0 0 4 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1287.6558 P12081 P12081 26 37 HARS Histidine--tRNA ligase, cytoplasmic yes yes 2 0.00081566 120.22 By MS/MS 4 0 1 1 22085000 0 0 22085000 1164 532 1221 5108 4211 4211 1 0 0 3607100 ASAETVDPASLWEY VGGRYLKGDHAGVLKASAETVDPASLWEY_ KASAETVDPASLWEY_______________ K A S E Y - 3 0 0 1 0 0 2 0 0 0 1 0 0 0 1 2 1 1 1 1 0 0 14 0 1537.6937 Q16658 Q16658 480 493 FSCN1 Fascin yes yes 2 0.0023689 100.02 By MS/MS 4 0 1 1 16179000 16179000 0 0 1165 1397 1222 5109 4212 4212 1 12623000 0 0 ASAFNSWFENAEEDLTDPVR HFRKVEDLFLTFAKKASAFNSWFENAEEDL SWFENAEEDLTDPVRCNSLEEIKALREAHD K A S V R C 3 1 2 2 0 0 3 0 0 0 1 0 0 2 1 2 1 1 0 1 0 0 20 0 2297.0237 Q13813 Q13813 2100 2119 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 4.638E-14 152.99 By MS/MS 1.5 0.5 1 1 2 4660600 0 0 4660600 1166 1268 1223 5110;5111 4213 4213 1 0 0 1022100 ASAISVTVLNVIEGPVFRPGSK KAEFHHSIMSQYKLKASAISVTVLNVIEGP VLNVIEGPVFRPGSKTYVVTGNMGSNDKVG K A S S K T 2 1 1 0 0 0 1 2 0 2 1 1 0 1 2 3 1 0 0 4 0 0 22 1 2240.2529 Q02413 Q02413 369 390 DSG1 Desmoglein-1 yes yes 3 0.02815 34.405 By MS/MS 8 0 1 1 2444000 2444000 0 0 1167 1146 1224 5112 4214 4214 1 2098300 0 0 ASALEQFVNSVR ______________________________ ______________________________ M A S V R Q 2 1 1 0 0 1 1 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 12 0 1319.6834 Q9UNS2 Q9UNS2 2 13 COPS3 COP9 signalosome complex subunit 3 yes yes 2 1.8989E-06 161.63 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 3457500 886940 2570600 0 1168 2211 1225 5113;5114;5115 4215;4216;4217 4215 3 710550 726470 0 ASASGSGAQVGGPISSGSSASSVTVTR SRTVLCGTCGQPADKASASGSGAQVGGPIS PISSGSSASSVTVTRSYRSVGGSGGGSFGD K A S T R S 4 1 0 0 0 1 0 5 0 1 0 0 0 0 1 9 2 0 0 3 0 0 27 0 2364.1517 P02545 P02545 598 624 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 8.876E-298 325.13 By MS/MS By MS/MS 5.86 3.31 4 1 2 4 3 133960000 0 58564000 75400000 1169 387 1226 5116;5117;5118;5119;5120;5121;5122 4218;4219;4220;4221;4222 4222 5 0 30481000 18031000 ASASYHISNLLEK ______________________________ ______________________________ M A S E K M 2 0 1 0 0 0 1 0 1 1 2 1 0 0 0 3 0 0 1 0 0 0 13 0 1431.7358 Q86VP6 Q86VP6 2 14 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 1.5133E-11 176.78 By MS/MS 2 0 1 1 10547000 0 0 10547000 1170 1554 1227 5123 4223 4223 1 0 0 2383500 ASAVSELSPR KPWPDATYGTGSASRASAVSELSPRERSPA GSASRASAVSELSPRERSPALKSPLQSVVV R A S P R E 2 1 0 0 0 0 1 0 0 0 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1015.5298 Q9Y2W1 Q9Y2W1 236 245 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.00094101 111.61 By MS/MS 1.5 0.5 1 1 2 17652000 0 0 17652000 1171 2252 1228 5124;5125 4224 4224 1 0 0 3906500 ASAVSPANLPAVLLQPR ______________________________ AVSPANLPAVLLQPRWKRVVGWSGPVPRPR M A S P R W 4 1 1 0 0 1 0 0 0 0 3 0 0 0 3 2 0 0 0 2 0 0 17 0 1702.973 P51610 P51610 2 18 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes yes 2 1.4127E-19 186.02 By MS/MS By matching 2.25 0.829 1 1 2 3 1 12185000 0 8771100 3413900 1172 897 1229 5126;5127;5128;5129 4225;4226;4227 4226 3 0 3970000 662140 ASEIMVDDEELAQHPATTEDIR TDFLRAANPVDFLSKASEIMVDDEELAQHP DEELAQHPATTEDIRVCCQDIRVLGRKELR K A S I R V 3 1 0 3 0 1 4 0 1 2 1 0 1 0 1 1 2 0 0 1 0 0 22 0 2469.1329 Q8IY81 Q8IY81 270 291 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 2.3536E-09 91.729 By MS/MS By MS/MS 3 1 1 1 1 1 8913800 0 2743700 6170100 1173 1590 1230 5130;5131 4228;4229 4229 2 0 1235500 1007800 ASELATLIQTK FLWVGEFANVIEKAKASELATLIQTKRELG EKAKASELATLIQTKRELGCRATYIQTIEE K A S T K R 2 0 0 0 0 1 1 0 0 1 2 1 0 0 0 1 2 0 0 0 0 0 11 0 1173.6605 O95425 O95425 1496 1506 SVIL Supervillin yes yes 2 0.00098453 114.51 By MS/MS By MS/MS 1 0 2 1 1 8399500 0 4672000 3727500 1174 325 1231 5132;5133 4230;4231 4230 2 0 2283600 803150 ASEMAGPPQMPNDFLSFQDIATEAAHPIR YYGLVMDLLVLGLHRASEMAGPPQMPNDFL LSFQDIATEAAHPIRLFCRYIDRIHIFFRF R A S I R L 5 1 1 2 0 2 2 1 1 2 1 0 2 2 4 2 1 0 0 0 0 0 29 0 3140.4696 Q6P2Q9 Q6P2Q9 1058 1086 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 1.5869E-32 126.36 By MS/MS By MS/MS 1.38 0.484 5 3 5 3 56704000 0 13040000 43664000 1175 1490 1232;1233 5134;5135;5136;5137;5138;5139;5140;5141 4232;4233;4234;4235;4236;4237 4236 640;641 6 0 6302300 9458400 ASESSKPWPDATYGTGSASR AKEQTFSGGTSQDTKASESSKPWPDATYGT KPWPDATYGTGSASRASAVSELSPRERSPA K A S S R A 3 1 0 1 0 0 1 2 0 0 0 1 0 0 2 5 2 1 1 0 0 0 20 1 2053.9341 Q9Y2W1 Q9Y2W1 216 235 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 4.854E-16 163.99 By MS/MS By MS/MS 2 1 3 3 1 1 4 4 115760000 0 31473000 84284000 1176 2252 1234 5142;5143;5144;5145;5146;5147;5148;5149 4238;4239;4240;4241 4241 4 0 13851000 18780000 ASETPPPVAQPKPEAPHPGLETTLQER DLLAELNEVLGEEQKASETPPPVAQPKPEA PEAPHPGLETTLQERLALYQTAIESARQAG K A S E R L 3 1 0 0 0 2 4 1 1 0 2 1 0 0 7 1 3 0 0 1 0 0 27 1 2876.4668 Q6P1N0 Q6P1N0 117 143 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 4 0.0018705 37.934 By MS/MS 2 0 1 1 4421600 0 4421600 0 1177 1488 1235 5150 4242 4242 1 0 1991100 0 ASEVMGPVEAAPEYR EIMMKIEEYISKQAKASEVMGPVEAAPEYR ASEVMGPVEAAPEYRVIVDANNLTVEIENE K A S Y R V 3 1 0 0 0 0 3 1 0 0 0 0 1 0 2 1 0 0 1 2 0 0 15 0 1604.7505 Q8WWY3 Q8WWY3 77 91 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 2 0.00028996 132.32 By MS/MS 4 0 1 1 11570000 0 0 11570000 1178 1691 1236 5151 4243 4243 1 0 0 1889800 ASFEEASNQLINHIEQFLDTNETPYFMK VNPAENFRVLVKQKKASFEEASNQLINHIE IEQFLDTNETPYFMKSIDCIRAFREEAIKF K A S M K S 2 0 3 1 0 2 4 0 1 2 2 1 1 3 1 2 2 0 1 0 0 0 28 0 3315.5394 P13010 P13010 607 634 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 1.3981E-06 59.912 By MS/MS 2 0 1 1 6984700 0 0 6984700 1179 542 1237 5152 4244 4244 1 0 0 1578400 ASFITPVPGGVGPMTVAMLMQSTVESAK RKVVGDVAYDEAKERASFITPVPGGVGPMT MTVAMLMQSTVESAKRFLEKFKPGKWMIQY R A S A K R 3 0 0 0 0 1 1 3 0 1 1 1 3 1 3 3 3 0 0 4 0 0 28 0 2805.4115 P11586 P11586 265 292 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 3 2.2377E-08 73.805 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 6133000 0 1357800 4775200 1180 528 1238 5153;5154;5155 4245;4246 4246 2 0 611440 1022600 ASFLYSLPHR DQTVKIWDLRQVRGKASFLYSLPHRHPVNA QVRGKASFLYSLPHRHPVNAACFSPDGARL K A S H R H 1 1 0 0 0 0 0 0 1 0 2 0 0 1 1 2 0 0 1 0 0 0 10 0 1189.6244 Q92466 Q92466 279 288 DDB2 DNA damage-binding protein 2 yes yes 2 0.012419 87.308 By MS/MS 5 0 1 1 3798500 0 3798500 0 1181 1704 1239 5156 4247 4247 1 0 979130 0 ASFNHFDKDHGGALGPEEFK RDAKGISQEQMQEFRASFNHFDKDHGGALG FDKDHGGALGPEEFKACLISLGYDVENDRQ R A S F K A 2 0 1 2 0 0 2 3 2 0 1 2 0 3 1 1 0 0 0 0 0 0 20 1 2202.013 O43707 O43707 772 791 ACTN4 Alpha-actinin-4 yes yes 3;4 1.798E-05 80.98 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 72507000 0 21549000 50959000 1182 210 1240 5157;5158;5159;5160 4248;4249;4250 4249 3 0 9703600 11463000 ASFSVLGDILGSAMR LSLKLPPNVVEESARASFSVLGDILGSAMR ASFSVLGDILGSAMRNTQNLLQMPYGCGEQ R A S M R N 2 1 0 1 0 0 0 2 0 1 2 0 1 1 0 3 0 0 0 1 0 0 15 0 1522.7814 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 950 964 yes yes 2 9.6509E-30 137.89 By MS/MS By MS/MS 3.2 1.72 1 1 1 1 1 2 3 11946000 0 4075100 7871000 + 1183 28 1241 5161;5162;5163;5164;5165 4251;4252;4253;4254;4255 4255 5 0 1619600 1601200 ASFVTEVLAHSGR ______________________________ ______________________________ M A S G R L 2 1 0 0 0 0 1 1 1 0 1 0 0 1 0 2 1 0 0 2 0 0 13 0 1372.7099 O43264 O43264 2 14 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 2 0.065929 55.401 By MS/MS 3 0 1 1 502740 0 502740 0 1184 192 1242 5166 4256 4256 1 0 214320 0 ASGADSKGDDLSTAILK ______________________________ GADSKGDDLSTAILKQKNRPNRLIVDEAIN M A S L K Q 3 0 0 3 0 0 0 2 0 1 2 2 0 0 0 3 1 0 0 0 0 0 17 1 1647.8315 P55072 P55072 2 18 VCP Transitional endoplasmic reticulum ATPase yes yes 2 4.0355E-06 113.54 By MS/MS By matching 2.5 0.5 1 1 1 1 7193100 0 3570400 3622700 1185 936 1243 5167;5168 4257 4257 1 0 1607800 702640 ASGDLIPWTVSEQFQDPDFGGLSGGR ISRQSILNSLSRGKKASGDLIPWTVSEQFQ EQFQDPDFGGLSGGRVVRIAVHPDYQGMGY K A S G R V 1 1 0 3 0 2 1 5 0 1 2 0 0 2 2 3 1 1 0 1 0 0 26 0 2735.2827 Q9H0A0 Q9H0A0 600 625 NAT10 N-acetyltransferase 10 yes yes 2 2.7991E-62 214.82 By MS/MS 2 0 1 1 1408000 0 0 1408000 1186 1959 1244 5169 4258 4258 1 0 0 318180 ASGFEESMK KGTYFPTWEGLFWEKASGFEESMKWKKLTN GLFWEKASGFEESMKWKKLTNAQRSGLNQI K A S M K W 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 2 0 0 0 0 0 0 9 0 984.42225 Q6P2Q9 Q6P2Q9 1506 1514 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.022712 80.438 By MS/MS 1 0 1 1 5645200 0 5645200 0 1187 1490 1245 5170 4259 4259 1 0 2759300 0 ASGGLPQFGDEYDFYR SFVKFALGSVVAVTKASGGLPQFGDEYDFY SGGLPQFGDEYDFYRSFPGFQAFCETQGDR K A S Y R S 1 1 0 2 0 1 1 3 0 0 1 0 0 2 1 1 0 0 2 0 0 0 16 0 1820.8006 Q01780 Q01780 49 64 EXOSC10 Exosome component 10 yes yes 2 4.7084E-05 114.71 By MS/MS 2 0 1 1 7531200 0 0 7531200 1188 1138 1246 5171 4260 4260 1 0 0 1701900 ASGGSGGVSVPALWSEVNR ______________________________ SGGVSVPALWSEVNRYGQNGDFTRALKTVN M A S N R Y 2 1 1 0 0 0 1 4 0 0 1 0 0 0 1 4 0 1 0 3 0 0 19 0 1828.9068 O76094 O76094 2 20 SRP72 Signal recognition particle subunit SRP72 yes yes 2 5.1236E-09 141.37 By MS/MS 3 0 1 1 2049700 0 2049700 0 1189 296 1247 5172 4261;4262 4262 2 0 873780 0 ASGGSLQGHDAVLR LLMYLMDLTHLILDKASGGSLQGHDAVLRL KASGGSLQGHDAVLRLVEIRTVLEKLRPLD K A S L R L 2 1 0 1 0 1 0 3 1 0 2 0 0 0 0 2 0 0 0 1 0 0 14 0 1366.6953 Q8NEJ9 Q8NEJ9 75 88 NGDN Neuroguidin yes yes 3 0.00016283 76.728 By MS/MS 6 0 1 1 0 0 0 0 1190 1639 1248 5173 4263 4263 1 0 0 0 ASGNYATVISHNPETK CCLEEKPGDRGKLARASGNYATVISHNPET SGNYATVISHNPETKKTRVKLPSGSKKVIS R A S T K K 2 0 2 0 0 0 1 1 1 1 0 1 0 0 1 2 2 0 1 1 0 0 16 0 1687.8166 P62917 P62917 129 144 RPL8 60S ribosomal protein L8 yes yes 2;3 5.6919E-109 267.02 By MS/MS By MS/MS By MS/MS 5.53 1.61 1 1 1 4 4 6 2 7 8 1183200000 20259000 304920000 858010000 1191 1052 1249 5174;5175;5176;5177;5178;5179;5180;5181;5182;5183;5184;5185;5186;5187;5188;5189;5190 4264;4265;4266;4267;4268;4269;4270;4271;4272;4273;4274;4275;4276;4277;4278;4279;4280;4281;4282 4270 19 43662000 117520000 133080000 ASGNYATVISHNPETKK CCLEEKPGDRGKLARASGNYATVISHNPET GNYATVISHNPETKKTRVKLPSGSKKVISS R A S K K T 2 0 2 0 0 0 1 1 1 1 0 2 0 0 1 2 2 0 1 1 0 0 17 1 1815.9115 P62917 P62917 129 145 RPL8 60S ribosomal protein L8 yes yes 2;3;4 3.4844E-70 172.57 By MS/MS By MS/MS 6.15 0.863 1 1 6 5 7 6 181180000 0 95811000 85368000 1192 1052 1250 5191;5192;5193;5194;5195;5196;5197;5198;5199;5200;5201;5202;5203 4283;4284;4285;4286;4287;4288;4289;4290;4291;4292;4293;4294 4292 12 0 37333000 13478000 ASGPGLNASGIPASLPVEFTIDAR FKIKVLPAHDASKVRASGPGLNASGIPASL GIPASLPVEFTIDARDAGEGLLTVQILDPE R A S A R D 4 1 1 1 0 0 1 3 0 2 2 0 0 1 3 3 1 0 0 1 0 0 24 0 2339.2121 Q14315 Q14315 1544 1567 FLNC Filamin-C yes yes 2;3 1.2843E-24 167.69 By MS/MS 1 0 2 2 7555500 0 7555500 0 1193 1298 1251 5204;5205 4295;4296 4296 2 0 3693000 0 ASGPGLNTTGVPASLPVEFTIDAK FKVKVLPTHDASKVKASGPGLNTTGVPASL GVPASLPVEFTIDAKDAGEGLLAVQITDPE K A S A K D 3 0 1 1 0 0 1 3 0 1 2 1 0 1 3 2 3 0 0 2 0 0 24 0 2341.2165 P21333 P21333 1550 1573 FLNA Filamin-A yes yes 2;3 1.7151E-20 139.67 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 26740000 0 21446000 5294200 1194 623 1252 5206;5207;5208;5209 4297;4298;4299 4298 3 0 10415000 1140700 ASGPPVSELITK VKKKAAKKAGGTPRKASGPPVSELITKAVA PRKASGPPVSELITKAVAASKERSGVSLAA K A S T K A 1 0 0 0 0 0 1 1 0 1 1 1 0 0 2 2 1 0 0 1 0 0 12 0 1197.6605 P10412;P16402;P16403 P16403 35 46 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.00089516 119.34 By MS/MS By MS/MS By MS/MS 5.62 2.8 2 1 1 1 2 3 2 1 1 2 1 7 8 7884200000 179070000 1933900000 5771300000 1195 509;578;577 1253 5210;5211;5212;5213;5214;5215;5216;5217;5218;5219;5220;5221;5222;5223;5224;5225 4300;4301;4302;4303;4304;4305;4306;4307;4308;4309;4310;4311;4312;4313;4314;4315;4316;4317;4318;4319;4320;4321;4322;4323;4324;4325 4300 26 238440000 859340000 987100000 ASGPPVSELITKAVAASK VKKKAAKKAGGTPRKASGPPVSELITKAVA PPVSELITKAVAASKERSGVSLAALKKALA K A S S K E 4 0 0 0 0 0 1 1 0 1 1 2 0 0 2 3 1 0 0 2 0 0 18 1 1724.9672 P10412;P16402;P16403 P16403 35 52 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 2.4789E-07 115.24 By MS/MS By MS/MS 7.12 1.05 3 2 2 1 3 5 83566000 0 14958000 68608000 1196 509;578;577 1254 5226;5227;5228;5229;5230;5231;5232;5233 4326;4327;4328;4329;4330;4331;4332 4331 7 0 5564100 10729000 ASGQAFELILSPR ______________________________ KRASGQAFELILSPRSKESVPEFPLSPPKK R A S P R S 2 1 0 0 0 1 1 1 0 1 2 0 0 1 1 2 0 0 0 0 0 0 13 0 1387.746 P16949 P16949 15 27 STMN1 Stathmin yes yes 2 3.0773E-07 166.69 By matching By MS/MS 8 0 2 1 1 12535000 3102200 0 9433000 1197 580 1255 5234;5235 4333 4333 1 2663300 0 1446200 ASGSGGGSAALGPSGFGPSGGSGTK GPRAPRPPQPKKSKKASGSGGGSAALGPSG LGPSGFGPSGGSGTKLPKKATKTAPPALPT K A S T K L 3 0 0 0 0 0 0 10 0 0 1 1 0 1 2 6 1 0 0 0 0 0 25 0 2006.9294 P25440 P25440 590 614 BRD2 Bromodomain-containing protein 2 yes yes 2 1.4488E-32 171.71 By MS/MS 2 0 1 1 7044000 0 0 7044000 1198 658 1256 5236 4334 4334 1 0 0 1591800 ASGVAVSDGVIK ______________________________ ______________________________ M A S I K V 2 0 0 1 0 0 0 2 0 1 0 1 0 0 0 2 0 0 0 3 0 0 12 0 1101.603 P23528 P23528 2 13 CFL1 Cofilin-1 yes yes 2 0.00016227 129.16 By MS/MS By MS/MS By MS/MS 7.47 1.67 1 1 1 5 4 3 4 7 4 477060000 38313000 236210000 202530000 1199 645 1257 5237;5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251 4335;4336;4337;4338;4339;4340;4341;4342;4343;4344;4345;4346 4336 11 59367000 186420000 88786000 ASGVAVSDGVIKVFNDMK ______________________________ VAVSDGVIKVFNDMKVRKSSTPEEVKKRKK M A S M K V 2 0 1 2 0 0 0 2 0 1 0 2 1 1 0 2 0 0 0 4 0 0 18 1 1835.9451 P23528 P23528 2 19 CFL1 Cofilin-1 yes yes 2 0.014246 53.967 By MS/MS By matching 7.67 0.471 1 2 2 1 8795400 0 1750300 7045100 1200 645 1258 5252;5253;5254 4347;4348 4348 2 0 881620 1080100 ASGVTVNDEVIK ______________________________ ______________________________ M A S I K V 1 0 1 1 0 0 1 1 0 1 0 1 0 0 0 1 1 0 0 3 0 0 12 0 1230.6456 Q9Y281 Q9Y281 2 13 CFL2 Cofilin-2 yes yes 2 0.0052188 93.096 By matching By MS/MS By matching 6.8 1.17 1 1 1 2 2 2 1 49791000 5447000 22208000 22136000 1201 2237 1259 5255;5256;5257;5258;5259 4349 4349 1 5195300 12397000 3393700 ASIHEAWTDGK RLERLDHLAEKFRQKASIHEAWTDGKEAML FRQKASIHEAWTDGKEAMLKHRDYETATLS K A S G K E 2 0 0 1 0 0 1 1 1 1 0 1 0 0 0 1 1 1 0 0 0 0 11 0 1213.5728 O43707;P12814 O43707 422 432 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2;3 1.6596E-09 117.28 By matching By MS/MS By MS/MS 2.44 0.685 6 2 1 2 3 4 95063000 35483000 17852000 41727000 1202 210;540 1260 5260;5261;5262;5263;5264;5265;5266;5267;5268 4350;4351;4352;4353;4354;4355 4351 6 42753000 7989300 8732300 ASIHEAWTDGKEAMLK RLERLDHLAEKFRQKASIHEAWTDGKEAML SIHEAWTDGKEAMLKHRDYETATLSDIKAL K A S L K H 3 0 0 1 0 0 2 1 1 1 1 2 1 0 0 1 1 1 0 0 0 0 16 1 1785.872 O43707 O43707 422 437 ACTN4 Alpha-actinin-4 yes yes 3 1.7884E-05 107.34 By MS/MS 2 0 1 1 9134700 0 9134700 0 1203 210 1261 5269 4356 4356 1 0 4113500 0 ASIHEAWTDGKEAMLR RLERLDHLAEKFRQKASIHEAWTDGKEAML SIHEAWTDGKEAMLRQKDYETATLSEIKAL K A S L R Q 3 1 0 1 0 0 2 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 16 1 1813.8781 P12814 P12814 403 418 ACTN1 Alpha-actinin-1 yes yes 4 0.0015777 74.786 By MS/MS 2 0 1 1 1872400 0 1872400 0 1204 540 1262 5270 4357 4357 1 0 843180 0 ASILNTWISLK QIFGLSNHLVWSKLRASILNTWISLKQADK SKLRASILNTWISLKQADKKIRECNL____ R A S L K Q 1 0 1 0 0 0 0 0 0 2 2 1 0 0 0 2 1 1 0 0 0 0 11 0 1244.7129 P22234 P22234 404 414 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase yes yes 2 0.0077877 95.523 By MS/MS 5 0 1 1 2882600 0 2882600 0 1205 628 1263 5271 4358 4358 1 0 743040 0 ASINMLR RLRQIFNGTFVKLNKASINMLRIVEPYIAW GTFVKLNKASINMLRIVEPYIAWGYPNLKS K A S L R I 1 1 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 7 0 803.43236 P18124 P18124 128 134 RPL7 60S ribosomal protein L7 yes yes 2 4.3532E-05 122.98 By MS/MS By MS/MS 4.33 2.31 2 1 1 1 2 2 3 6 154120000 0 79997000 74123000 1206 594 1264 5272;5273;5274;5275;5276;5277;5278;5279;5280 4359;4360;4361;4362;4363;4364;4365;4366 4362 8 0 29219000 11374000 ASIPFSVVGSNQLIEAK SDEDEDFKEQTRLLKASIPFSVVGSNQLIE IPFSVVGSNQLIEAKGKKVRGRLYPWGVVE K A S A K G 2 0 1 0 0 1 1 1 0 2 1 1 0 1 1 3 0 0 0 2 0 0 17 0 1758.9516 Q15019 Q15019 233 249 SEPT2 Septin-2 yes yes 2 0.0025287 84.297 By MS/MS 5 0 1 1 3321700 0 3321700 0 1207 1330 1265 5281 4367 4367 1 0 856230 0 ASITALEAK VKLQEMEGTVKSKYKASITALEAKIAQLEE VKSKYKASITALEAKIAQLEEQLDNETKER K A S A K I 3 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 902.5073 P35579 P35579 1807 1815 MYH9 Myosin-9 yes yes 2 0.0038318 99.139 By MS/MS 2 0.816 1 1 1 3 204080000 0 204080000 0 1208 752 1266 5282;5283;5284 4368 4368 1 0 99227000 0 ASITPGTILIILTGR SHGKKPFSQHVRKLRASITPGTILIILTGR ASITPGTILIILTGRHRGKRVVFLKQLASG R A S G R H 1 1 0 0 0 0 0 2 0 4 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1524.9239 Q02878 Q02878 142 156 RPL6 60S ribosomal protein L6 yes yes 2;3 7.8343E-12 181.87 By MS/MS By MS/MS 4.24 2.02 2 3 3 3 4 4 1 1 8 13 143970000 0 91015000 52959000 1209 1149 1267 5285;5286;5287;5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300;5301;5302;5303;5304;5305 4369;4370;4371;4372;4373;4374;4375;4376;4377;4378;4379;4380;4381;4382;4383;4384;4385;4386;4387;4388;4389 4387 21 0 29673000 8625600 ASLCISTK MIEKLGGKLTGTANKASLCISTKKEVEKMN LTGTANKASLCISTKKEVEKMNKKMEEVKE K A S T K K 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 2 1 0 0 0 0 0 8 0 878.45315 P09874 P09874 426 433 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.016776 86.833 By MS/MS 2 0 1 1 25605000 0 0 25605000 1210 492 1268 5306 4390 4390 1 0 0 5786300 ASLEAAIADAEQR ISRLQAEIEGLKGQRASLEAAIADAEQRGE QRASLEAAIADAEQRGELAIKDANAKLSEL R A S Q R G 5 1 0 1 0 1 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1343.6681 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 329 341 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.0079E-126 280.09 By MS/MS By MS/MS By MS/MS 3.86 1.91 3 3 3 4 4 1 3 2 8 11 1521400000 9679200 260070000 1251600000 + 1211 49 1269 5307;5308;5309;5310;5311;5312;5313;5314;5315;5316;5317;5318;5319;5320;5321;5322;5323;5324;5325;5326;5327 4391;4392;4393;4394;4395;4396;4397;4398;4399;4400;4401;4402;4403;4404;4405;4406;4407;4408;4409;4410 4395 19 8183800 83415000 204030000 ASLEAAIADAEQRGELAIK ISRLQAEIEGLKGQRASLEAAIADAEQRGE AAIADAEQRGELAIKDANAKLSELEAALQR R A S I K D 6 1 0 1 0 1 3 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 19 1 1955.0324 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 329 347 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 8.7462E-30 196.18 By MS/MS By MS/MS 3.57 1.24 1 2 3 4 4 8 6 172750000 0 115520000 57236000 + 1212 49 1270 5328;5329;5330;5331;5332;5333;5334;5335;5336;5337;5338;5339;5340;5341 4411;4412;4413;4414;4415;4416;4417;4418;4419;4420;4421;4422 4417 12 0 38294000 9085300 ASLEGNLAETENR MQALEIELQSQLSMKASLEGNLAETENRYC MKASLEGNLAETENRYCVQLSQIQGLIGSV K A S N R Y 2 1 2 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1402.6688 Q04695;CON__Q04695 Q04695 322 334 KRT17 Keratin, type I cytoskeletal 17 yes no 2 7.2466E-34 209.96 By MS/MS By MS/MS By MS/MS 4.69 2.55 2 1 1 2 3 1 1 1 1 4 1 8 545390000 46473000 31478000 467440000 + 1213 73 1271 5342;5343;5344;5345;5346;5347;5348;5349;5350;5351;5352;5353;5354 4423;4424;4425;4426;4427;4428;4429;4430;4431;4432;4433;4434 4426 12 38906000 8114000 72244000 ASLENSLEETK MQNLEIELQSQLSMKASLENSLEETKGRYC LSMKASLENSLEETKGRYCMQLAQIQEMIG K A S T K G 1 0 1 0 0 0 3 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1219.5932 CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P02533 353 363 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 4.5325E-23 175.93 By MS/MS By MS/MS By MS/MS 5.89 2.73 2 1 3 3 1 2 2 2 2 9 3 6 990870000 792090000 18884000 179900000 + 1214 35;53 1272 5355;5356;5357;5358;5359;5360;5361;5362;5363;5364;5365;5366;5367;5368;5369;5370;5371;5372 4435;4436;4437;4438;4439;4440;4441;4442;4443;4444;4445;4446;4447;4448;4449;4450 4445 16 725200000 6730000 70735000 ASLENSLEETKGR MQNLEIELQSQLSMKASLENSLEETKGRYC MKASLENSLEETKGRYCMQLAQIQEMIGSV K A S G R Y 1 1 1 0 0 0 3 1 0 0 2 1 0 0 0 2 1 0 0 0 0 0 13 1 1432.7158 CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P02533 353 365 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2;3 9.0089E-07 171.62 By MS/MS By matching By MS/MS 5.69 3.07 3 1 2 1 1 2 2 1 8 1 4 123130000 100830000 1083800 21215000 + 1215 35;53 1273 5373;5374;5375;5376;5377;5378;5379;5380;5381;5382;5383;5384;5385 4451;4452;4453;4454;4455;4456;4457;4458;4459;4460 4459 10 73183000 279360 5052000 ASLENSLR VQSLEIDLDSMRNLKASLENSLREVEARYA DSMRNLKASLENSLREVEARYALQMEQLNG K A S L R E 1 1 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 8 0 888.46649 P05783;CON__H-INV:HIT000015463 P05783 318 325 KRT18 Keratin, type I cytoskeletal 18 yes no 2 7.0318E-06 155.51 By matching By MS/MS By MS/MS 4.08 1.93 2 3 2 2 1 2 2 6 4 449790000 9086500 137420000 303290000 1216 436 1274 5386;5387;5388;5389;5390;5391;5392;5393;5394;5395;5396;5397 4461;4462;4463;4464;4465;4466;4467;4468;4469 4468 9 9215700 39622000 45392000 ASLESWWQNPVPGLR VDQRARRAEILSEMRASLESWWQNPVPGLR ASLESWWQNPVPGLRLTFPEQSVPGALQFR R A S L R L 1 1 1 0 0 1 1 1 0 0 2 0 0 0 2 2 0 2 0 1 0 0 15 0 1738.8791 Q9Y6K5 Q9Y6K5 103 117 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 0.00028394 129.16 By MS/MS By MS/MS 4.86 2.29 2 1 2 1 1 3 4 40443000 0 9557400 30885000 1217 2314 1275 5398;5399;5400;5401;5402;5403;5404 4470;4471;4472;4473 4470 4 0 4115700 5276500 ASLEVSR ______________________________ ______________________________ M A S S R S 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 7 0 760.40792 O60762 O60762 2 8 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 1 0.0022017 113.14 By MS/MS 7 0 1 1 16603000 0 0 16603000 1218 231 1276 5405 4474 4474 1 0 0 2946200 ASLLGDMHFR SELFILSTTEAPVKRASLLGDMHFRSLRTK APVKRASLLGDMHFRSLRTKLLLMSRNEEA R A S F R S 1 1 0 1 0 0 0 1 1 0 2 0 1 1 0 1 0 0 0 0 0 0 10 0 1145.5652 P51116 P51116 191 200 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.034544 76.827 By MS/MS 3 0 1 1 4651100 0 0 4651100 1219 888 1277 5406 4475 4475 1 0 0 902100 ASLLPQSLAAAAAVPTR TSAAAAAAASYSALRASLLPQSLAAAAAVP LLPQSLAAAAAVPTRSYSQESKTTYLEDLP R A S T R S 6 1 0 0 0 1 0 0 0 0 3 0 0 0 2 2 1 0 0 1 0 0 17 0 1635.9308 Q12849 Q12849 99 115 GRSF1 G-rich sequence factor 1 yes yes 2 0.0012809 91.62 By MS/MS 4 0 1 1 2797000 0 2797000 0 1220 1204 1278 5407 4476 4476 1 0 928220 0 ASLSLAPVNIFK ______________________________ ______________________________ M A S F K A 2 0 1 0 0 0 0 0 0 1 2 1 0 1 1 2 0 0 0 1 0 0 12 0 1258.7285 P78371 P78371 2 13 CCT2 T-complex protein 1 subunit beta yes yes 2 8.9163E-05 133.13 By MS/MS By MS/MS By MS/MS 5.83 2.73 1 1 3 1 1 2 1 2 1 8 3 54446000 4631900 32472000 17342000 1221 1086 1279 5408;5409;5410;5411;5412;5413;5414;5415;5416;5417;5418;5419 4477;4478;4479;4480;4481;4482;4483 4479 7 3613700 19381000 4241800 ASLSLWQAMEK QAERAAAGYPDPYSRASLSLWQAMEKGLVP PYSRASLSLWQAMEKGLVPQNEGLPLLQVQ R A S E K G 2 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 1 0 0 0 0 11 0 1262.6329 P58107 P58107 1334 1344 EPPK1 Epiplakin yes yes 2 0.0016618 109.83 By MS/MS 1 0 1 1 7600600 0 7600600 0 1222 958 1280 5420 4484 4484 1 0 3715000 0 ASLTYAEAQLR EILKTKFTKSVINSKASLTYAEAQLRIDSA INSKASLTYAEAQLRIDSANMNDDITTSLR K A S L R I 3 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 11 0 1221.6354 Q9Y2L1 Q9Y2L1 586 596 DIS3 Exosome complex exonuclease RRP44 yes yes 2 0.0095673 92.051 By MS/MS 2 0 1 1 6604500 0 0 6604500 1223 2242 1281 5421 4485 4485 1 0 0 1492500 ASLVALPEQTASEEETPPPLLTK SKSPSPPRLTEDRKKASLVALPEQTASEEE QTASEEETPPPLLTKEASSPPPHPQLHSEE K A S T K E 3 0 0 0 0 1 4 0 0 0 4 1 0 0 4 2 3 0 0 1 0 0 23 0 2420.2686 Q9UKV3 Q9UKV3 399 421 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 0.0020414 50.055 By MS/MS 1 0 1 1 1531400 0 1531400 0 1224 2184 1282 5422 4486 4486 1 0 748510 0 ASMGTLAFDEYGRPFLIIK ______________________________ TLAFDEYGRPFLIIKDQDRKSRLMGLEALK M A S I K D 2 1 0 1 0 0 1 2 0 2 2 1 1 2 1 1 1 0 1 0 0 0 19 1 2128.1027 P48643 P48643 2 20 CCT5 T-complex protein 1 subunit epsilon yes yes 2 3.9251E-17 176.25 By MS/MS 3.5 0.5 1 1 2 13675000 0 0 13675000 1225 845 1283 5423;5424 4487;4488 4487 2 0 0 2474100 ASMPHMVQSK PLSPASNLRVQPKRKASMPHMVQSKKVNLC QPKRKASMPHMVQSKKVNLCRPFPKRTASR K A S S K K 1 0 0 0 0 1 0 0 1 0 0 1 2 0 1 2 0 0 0 1 0 0 10 0 1114.5263 Q5VWN6 Q5VWN6 353 362 FAM208B Protein FAM208B yes yes 2 0.01988 70.816 By MS/MS By matching 5 0.816 1 1 1 2 1 59355000 57510000 0 1845300 1226 1462 1284 5425;5426;5427 4489 4489 635;636 1 45673000 0 276070 ASMQPIQIAEGTGITTR DEEMKTGDPQETLRRASMQPIQIAEGTGIT MQPIQIAEGTGITTRQQRKRVSLEPHQGPG R A S T R Q 2 1 0 0 0 2 1 2 0 3 0 0 1 0 1 1 3 0 0 0 0 0 17 0 1772.9091 Q14980 Q14980 1968 1984 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 7.981E-06 142.85 By MS/MS By MS/MS 4 2.54 3 1 1 2 2 4 5 89182000 0 34406000 54776000 1227 1327 1285 5428;5429;5430;5431;5432;5433;5434;5435;5436 4490;4491;4492;4493;4494;4495;4496;4497 4496 8 0 16301000 9437800 ASMQQQQQLASAR TNMLKNKQPTPVNIRASMQQQQQLASARNR IRASMQQQQQLASARNRRLAQQMENRPSVQ R A S A R N 3 1 0 0 0 5 0 0 0 0 1 0 1 0 0 2 0 0 0 0 0 0 13 0 1445.7045 Q9Y3Y2 Q9Y3Y2 39 51 CHTOP Chromatin target of PRMT1 protein yes yes 2 1.8753E-24 196.11 By MS/MS By MS/MS By MS/MS 7.56 1.57 3 3 1 2 1 5 3 115890000 7198800 49390000 59303000 1228 2280 1286;1287 5437;5438;5439;5440;5441;5442;5443;5444;5445 4498;4499;4500;4501;4502;4503;4504;4505;4506 4499 736 9 15515000 21276000 10542000 ASNLENSTYDLYTIPK MSYNPAENAVLLCTRASNLENSTYDLYTIP SNLENSTYDLYTIPKDADSQNPDAPEGKRS R A S P K D 1 0 2 1 0 0 1 0 0 1 2 1 0 0 1 2 2 0 2 0 0 0 16 0 1827.8891 P53621 P53621 383 398 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 3.6735E-05 121.04 By MS/MS 2 0 1 1 7121400 0 7121400 0 1229 922 1288 5446 4507 4507 1 0 3206800 0 ASNNDLNVATNFLLQH MEMGFSRGDALEALRASNNDLNVATNFLLQ SNNDLNVATNFLLQH_______________ R A S Q H - 2 0 4 1 0 1 0 0 1 0 3 0 0 1 0 1 1 0 0 1 0 0 16 0 1769.8697 Q8NBM4 Q8NBM4 329 344 UBAC2 Ubiquitin-associated domain-containing protein 2 yes yes 2 7.4135E-05 107.85 By MS/MS 1 0 1 1 1845900 1845900 0 0 1230 1626 1289 5447 4508 4508 1 1845900 0 0 ASNVTNKTDPR ______________________________ ______________________________ M A S P R S 1 1 2 1 0 0 0 0 0 0 0 1 0 0 1 1 2 0 0 1 0 0 11 1 1201.6051 P07910 P07910 2 12 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2 0.0048705 88.392 By MS/MS 6 0 1 1 19033000 0 19033000 0 1231 467 1290 5448 4509 4509 1 0 6588600 0 ASPAFDYAEFEPHIVPSTKNPHQLFCK LQVYTRGKKYQRLVRASPAFDYAEFEPHIV HIVPSTKNPHQLFCKLTLRHINKCPEHVLR R A S C K L 3 0 1 1 1 1 2 0 2 1 1 2 0 3 4 2 1 0 1 1 0 0 27 1 3129.5018 Q15527 Q15527 58 84 SURF2 Surfeit locus protein 2 yes yes 7 0.071313 2.323 By MS/MS 6 0 1 1 2883000 0 2883000 0 1232 1373 1291 5449 4510 4510 1 0 998000 0 ASPATQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVK HRSRGGGGGSRGGARASPATQPPPLLPPSA APTPLLPPSATASVKMEPENKYLPELMAEK R A S V K M 7 0 0 1 0 1 0 3 0 0 4 1 0 0 12 4 5 0 0 2 0 0 40 0 3725.988 Q07666 Q07666 57 96 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 3;4 4.4569E-09 47.867 By MS/MS By MS/MS 4.83 1.46 3 3 1 3 2 9 3 173410000 0 128940000 44475000 1233 1178 1292 5450;5451;5452;5453;5454;5455;5456;5457;5458;5459;5460;5461 4511;4512;4513;4514;4515;4516;4517;4518;4519;4520;4521;4522;4523;4524;4525;4526;4527;4528;4529;4530 4515 20 0 44078000 7400200 ASPLVAIGQTLAR ERTRFQELLASPAYRASPLVAIGQTLARQM YRASPLVAIGQTLARQMQLEDGGQL_____ R A S A R Q 3 1 0 0 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 1 0 0 13 0 1295.7561 Q9NSI2 Q9NSI2 208 220 FAM207A Protein FAM207A yes yes 2 0.00033975 128.01 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 16311000 0 7547400 8764100 1234 2052 1293 5462;5463;5464;5465 4531;4532;4533;4534 4532 4 0 3677700 1405500 ASPPSLEQPYLTHR AGMGDVVNIWAGQGKASPPSLEQPYLTHRL KASPPSLEQPYLTHRLSGPVHGLQFCPFED K A S H R L 1 1 0 0 0 1 1 0 1 0 2 0 0 0 3 2 1 0 1 0 0 0 14 0 1594.8104 O15213 O15213 432 445 WDR46 WD repeat-containing protein 46 yes yes 3 0.0044469 72.321 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 50254000 0 21445000 28809000 1235 173 1294 5466;5467;5468 4535;4536 4536 2 0 9142100 5732700 ASPSLERPEK ______________________________ ______________________________ M A S E K G 1 1 0 0 0 0 2 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 10 1 1112.5826 Q13601 Q13601 2 11 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.001979 97.741 By MS/MS 5 0 1 1 11061000 0 11061000 0 1236 1261 1295 5469 4537 4537 1 0 2851100 0 ASQGSTLVHPFR INFLLGILYIATPNKASQGSTLVHPFRALG PNKASQGSTLVHPFRALGKNSELLVVSARE K A S F R A 1 1 0 0 0 1 0 1 1 0 1 0 0 1 1 2 1 0 0 1 0 0 12 0 1298.6731 P78316 P78316 628 639 NOP14 Nucleolar protein 14 yes yes 3 0.016858 64.55 By MS/MS 1.5 0.5 1 1 2 17525000 0 0 17525000 1237 1083 1296 5470;5471 4538 4538 1 0 0 3914700 ASQNLVVLAR ILLDPEEKGTEKKQKASQNLVVLAREDAGA EKKQKASQNLVVLAREDAGAEKIFRSNGVQ K A S A R E 2 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1069.6244 Q9H3U1 Q9H3U1 174 183 UNC45A Protein unc-45 homolog A yes yes 2 0.033264 77.732 By MS/MS 2 0 1 1 0 0 0 0 1238 1980 1297 5472 4539 4539 1 0 0 0 ASQSQGIQQLLQAEK ______________________________ ASQSQGIQQLLQAEKRAAEKVSEARKRKNR M A S E K R 2 0 0 0 0 5 1 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 15 0 1627.8529 O75348;O95670 O75348 2 16 ATP6V1G1;ATP6V1G2 V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2 yes no 2 3.5531E-12 182.08 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 29264000 0 6653800 22610000 1239 251 1298 5473;5474;5475;5476 4540;4541;4542;4543 4540 4 0 3964500 6108400 ASREEILAQAK QAQMKDCMRELDDTRASREEILAQAKENEK DDTRASREEILAQAKENEKKLKSMEAEMIQ R A S A K E 3 1 0 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1214.6619 P35579 P35579 1659 1669 MYH9 Myosin-9 yes yes 2;3 0.0020279 134.59 By MS/MS By MS/MS 1.33 0.471 4 2 4 2 300200000 0 256930000 43267000 1240 752 1299 5477;5478;5479;5480;5481;5482 4544;4545;4546;4547 4547 4 0 124880000 9322600 ASSAQSGGSSGGPAVPTVQR ______________________________ SGGSSGGPAVPTVQRGIIKMVLSGCAIIVR M A S Q R G 3 1 0 0 0 2 0 4 0 0 0 0 0 0 2 5 1 0 0 2 0 0 20 0 1799.8762 Q7KZF4 Q7KZF4 2 21 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 9.1466E-14 148.57 By MS/MS 2 0 1 1 10724000 0 10724000 0 1241 1518 1300 5483 4548 4548 1 0 4829300 0 ASSEGGTAAGAGLDSLHK RGLTARERFQNLDKKASSEGGTAAGAGLDS EGGTAAGAGLDSLHKNSVSQISVLSGGKAK K A S H K N 4 0 0 1 0 0 1 4 1 0 2 1 0 0 0 3 1 0 0 0 0 0 18 0 1627.7802 O15143 O15143 309 326 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 2;3 2.6596E-09 155.08 By MS/MS 5.67 0.471 1 2 3 15699000 0 15699000 0 1242 168 1301 5484;5485;5486 4549;4550 4549 2 0 5234800 0 ASSGLLYPLER FQGHSGAQCITCSYKASSGLLYPLERGFIY CSYKASSGLLYPLERGFIYVHKPPVHIRFD K A S E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 0 1 2 0 0 1 0 0 0 11 0 1204.6452 Q08945 Q08945 347 357 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.00032711 125.57 By matching By MS/MS By MS/MS 2.71 1.03 1 2 2 2 1 3 3 245850000 4722700 93067000 148060000 1243 1186 1302 5487;5488;5489;5490;5491;5492;5493 4551;4552;4553;4554;4555;4556 4551 6 4722700 38549000 28865000 ASSIMDELFQDR EQSHVMDVMEDSFTRASSIMDELFQDRFFL FTRASSIMDELFQDRFFLRRPQDTQYYSPF R A S D R F 1 1 0 2 0 1 1 0 0 1 1 0 1 1 0 2 0 0 0 0 0 0 12 0 1410.6449 CON__P17697 CON__P17697 177 188 yes yes 2 1.6673E-05 153.97 By matching By MS/MS 6 0 2 1 1 9430800 664250 0 8766600 + 1244 60 1303 5494;5495 4557 4557 1 884460 0 1311600 ASSSGNDDDLTIPR ______________________________ MASSSGNDDDLTIPRAAINKMIKETLPNVR M A S P R A 1 1 1 3 0 0 0 1 0 1 1 0 0 0 1 3 1 0 0 0 0 0 14 0 1446.6587 Q01658 Q01658 2 15 DR1 Protein Dr1 yes yes 2 3.3616E-12 183.33 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 25904000 0 1512000 24392000 1245 1136 1304 5496;5497;5498 4558;4559;4560 4560 2 0 868200 4065300 ASSTSPVEISEWLDQK FDAAATSGGSASSEKASSTSPVEISEWLDQ SSTSPVEISEWLDQKLTKSDRPELTGAKVV K A S Q K L 1 0 0 1 0 1 2 0 0 1 1 1 0 0 1 4 1 1 0 1 0 0 16 0 1775.8578 P13804 P13804 188 203 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes yes 2 0.010766 71.607 By matching By MS/MS 6 0 2 1 1 9948600 0 1957400 7991200 1246 552 1305 5499;5500 4561 4561 1 0 677570 1195600 ASTEGVAIQGQQGTR KNPPKNVQQHEKVQKASTEGVAIQGQQGTR ASTEGVAIQGQQGTRLLPEQLIKEAFILSD K A S T R L 2 1 0 0 0 3 1 3 0 1 0 0 0 0 0 1 2 0 0 1 0 0 15 0 1501.7485 Q92621 Q92621 70 84 NUP205 Nuclear pore complex protein Nup205 yes yes 2 5.2202E-08 173.04 By MS/MS 1 0 1 1 8865300 0 0 8865300 1247 1714 1306 5501 4562 4562 1 0 0 1910200 ASTNAMLISAGLPPLK DREREREKEKEKELRASTNAMLISAGLPPL STNAMLISAGLPPLKASHSAHSTHSAHSTH R A S L K A 3 0 1 0 0 0 0 1 0 1 3 1 1 0 2 2 1 0 0 0 0 0 16 0 1582.8753 O43143 O43143 63 78 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00013223 100.02 By MS/MS By MS/MS 2.78 1.13 1 3 3 1 1 3 6 49758000 0 16516000 33242000 1248 186 1307;1308 5502;5503;5504;5505;5506;5507;5508;5509;5510 4563;4564;4565;4566;4567;4568 4565 78 6 0 7369900 6522400 ASTNLQDQLEK KKNAAEAMLLQLGYKASTNLQDQLEKTGEN LGYKASTNLQDQLEKTGENKGWSGPKPGFP K A S E K T 1 0 1 1 0 2 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1245.6201 Q9NUL3 Q9NUL3 377 387 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 yes yes 2 0.009032 93.096 By MS/MS 4 0 1 1 3326500 0 3326500 0 1249 2060 1309 5511 4569 4569 1 0 1103900 0 ASTPAILFLDEIDSILGAR GDSEKVLSQIFRQARASTPAILFLDEIDSI AILFLDEIDSILGARSASKTGCDVQERVLS R A S A R S 3 1 0 2 0 0 1 1 0 3 3 0 0 1 1 2 1 0 0 0 0 0 19 0 2001.0783 Q9BVQ7 Q9BVQ7 555 573 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 0.0027278 70.963 By MS/MS 2.5 0.5 1 1 2 895750 0 0 895750 1250 1918 1310 5512;5513 4570 4570 1 0 0 189550 ASVAAQQQEEAR YKREEEDREVAAAVRASVAAQQQEEARRSE AVRASVAAQQQEEARRSEDQEEGGRPKKEE R A S A R R 4 1 0 0 0 3 2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 12 0 1286.6215 Q86UK7 Q86UK7 351 362 ZNF598 Zinc finger protein 598 yes yes 2 0.00030099 129.85 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 2679200 0 954760 1724500 1251 1548 1311 5514;5515 4571;4572 4572 2 0 429940 334470 ASVHCLETGEYTHIR NFRHVVHKWHYKLTKASVHCLETGEYTHIR ASVHCLETGEYTHIRNILIVLTKILPWYPK K A S I R N 1 1 0 0 1 0 2 1 2 1 1 0 0 0 0 1 2 0 1 1 0 0 15 0 1771.8312 Q8NI27 Q8NI27 1107 1121 THOC2 THO complex subunit 2 yes yes 3 0.056035 41.284 By MS/MS 1 0 1 1 3608300 0 0 3608300 1252 1647 1312 5516 4573 4573 0 0 0 777460 ASVHTLSGHTNAVATVR CSRDSTARIWDVRTKASVHTLSGHTNAVAT VHTLSGHTNAVATVRCQAAEPQIITGSHDT K A S V R C 3 1 1 0 0 0 0 1 2 0 1 0 0 0 0 2 3 0 0 3 0 0 17 0 1719.9016 O43660 O43660 321 337 PLRG1 Pleiotropic regulator 1 yes yes 3;4 2.4298E-20 191.44 By matching By MS/MS By MS/MS 3.82 1.34 1 1 1 5 2 1 1 3 7 129310000 3456400 53012000 72844000 1253 205 1313 5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527 4574;4575;4576;4577;4578;4579 4575 6 2696600 17593000 12448000 ASVITQVFHVPLEER QEPSGAWGNKIRPIKASVITQVFHVPLEER ASVITQVFHVPLEERKYKDMNQFGEGEQAK K A S E R K 1 1 0 0 0 1 2 0 1 1 1 0 0 1 1 1 1 0 0 3 0 0 15 0 1723.9257 Q00341 Q00341 73 87 HDLBP Vigilin yes yes 3 0.027579 47.639 By MS/MS By matching 1.5 0.5 1 1 1 1 19947000 0 1145700 18802000 1254 1122 1314 5528;5529 4580 4580 1 0 560010 4248800 ASVSPMDEPVPDSESPIEK PVSFEFSDAKDENERASVSPMDEPVPDSES PMDEPVPDSESPIEKVLSPLRSPPLIGSES R A S E K V 1 0 0 2 0 0 3 0 0 1 0 1 1 0 4 4 0 0 0 2 0 0 19 0 2012.9249 P46821 P46821 1375 1393 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00014761 76.588 By MS/MS 1 0 1 1 8595600 0 0 8595600 1255 834 1315 5530 4581 4581 0 0 0 1852100 ASVTLSEAEK ______________________________ ______________________________ M A S E K V 2 0 0 0 0 0 2 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 10 0 1033.5292 Q15024 Q15024 2 11 EXOSC7 Exosome complex component RRP42 yes yes 2 0.0061478 87.149 By matching By MS/MS By matching 5 1 2 2 1 2 1 14324000 2307200 6476200 5540300 1256 1334 1316 5531;5532;5533;5534 4582 4582 1 1800100 2201500 828880 ASVTVGGEQISAIGR ______________________________ ASVTVGGEQISAIGRGICVLLGISLEDTQK R A S G R G 2 1 0 0 0 1 1 3 0 2 0 0 0 0 0 2 1 0 0 2 0 0 15 0 1443.7682 Q8TEA8 Q8TEA8 11 25 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 2 5.3947E-25 198.81 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 41021000 0 15966000 25056000 1257 1664 1317 5535;5536;5537;5538 4583;4584;4585 4583 3 0 8536500 4274100 ASVVTLPVYLNFTR LTQLRWVKQTNTEKKASVVTLPVYLNFTRA KASVVTLPVYLNFTRADLIFTVDFEIATKE K A S T R A 1 1 1 0 0 0 0 0 0 0 2 0 0 1 1 1 2 0 1 3 0 0 14 0 1578.877 Q14204 Q14204 4602 4615 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.030928 69.01 By MS/MS 1 0 1 1 2140300 0 2140300 0 1258 1292 1318 5539 4586 4586 1 0 1046100 0 ASWPSVQQGLQQSFLHTLDSYR CRSIVRTLHQHKLGRASWPSVQQGLQQSFL QGLQQSFLHTLDSYRILQKAAPFDRRATSL R A S Y R I 1 1 0 1 0 4 0 1 1 0 3 0 0 1 1 4 1 1 1 1 0 0 22 0 2547.2506 Q92466 Q92466 81 102 DDB2 DNA damage-binding protein 2 yes yes 3 1.1182E-09 96.131 By MS/MS 5 0 1 1 4939300 0 0 4939300 1259 1704 1319 5540 4587 4587 1 0 0 688940 ASYAEQLSMLK VAEQERTAQQLRAEKASYAEQLSMLKKAHG RAEKASYAEQLSMLKKAHGLLAEENRGLGE K A S L K K 2 0 0 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 1 0 0 0 11 0 1239.6169 Q14980 Q14980 1431 1441 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00048051 119.68 By matching By MS/MS By MS/MS 1 0 3 1 1 1 34629000 1807200 8090600 24731000 1260 1327 1320 5541;5542;5543 4588;4589 4588 2 1807200 3954600 5328800 ASYAEQLSMLKK VAEQERTAQQLRAEKASYAEQLSMLKKAHG AEKASYAEQLSMLKKAHGLLAEENRGLGER K A S K K A 2 0 0 0 0 1 1 0 0 0 2 2 1 0 0 2 0 0 1 0 0 0 12 1 1367.7119 Q14980 Q14980 1431 1442 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 0.018855 93.096 By MS/MS 1 0 2 2 20800000 0 0 20800000 1261 1327 1321 5544;5545 4590;4591 4591 2 0 0 4481800 ASYDVSDSGQLEHVQPWSV WLKLRPLMKILAKYKASYDVSDSGQLEHVQ VSDSGQLEHVQPWSV_______________ K A S S V - 1 0 0 2 0 2 1 1 1 0 1 0 0 0 1 4 0 1 1 3 0 0 19 0 2102.9545 Q01813 Q01813 766 784 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 0.0018974 74.133 By matching By MS/MS 3 0 2 1 1 14328000 9535500 0 4792100 1262 1139 1322 5546;5547 4592 4592 1 11002000 0 929430 ASYVAPLTAQPATYR FFGRDRSPLRRSPPRASYVAPLTAQPATYR ASYVAPLTAQPATYRAQPSVSLGAAYRAQP R A S Y R A 4 1 0 0 0 1 0 0 0 0 1 0 0 0 2 1 2 0 2 1 0 0 15 0 1607.8308 Q96PK6 Q96PK6 224 238 RBM14 RNA-binding protein 14 yes yes 2;3 0.00028164 131.17 By MS/MS By MS/MS By MS/MS 4.07 1.58 2 5 2 1 3 1 2 7 5 210430000 9995700 50723000 149710000 1263 1818 1323 5548;5549;5550;5551;5552;5553;5554;5555;5556;5557;5558;5559;5560;5561 4593;4594;4595;4596;4597;4598;4599;4600;4601;4602 4594 10 11533000 21232000 28570000 ATAFNEQVDK KLFSLELVDESGEIRATAFNEQVDKFFPLI SGEIRATAFNEQVDKFFPLIEVNKVYYFSK R A T D K F 2 0 1 1 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 1 0 0 10 0 1121.5353 P27694 P27694 235 244 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.00042271 118.18 By matching By MS/MS 2.5 0.5 1 1 1 1 19810000 2010200 0 17799000 1264 679 1324 5562;5563 4603 4603 1 2422000 0 3452200 ATAFNEQVDKFFPLIEVNK KLFSLELVDESGEIRATAFNEQVDKFFPLI NEQVDKFFPLIEVNKVYYFSKGTLKIANKQ R A T N K V 2 0 2 1 0 1 2 0 0 1 1 2 0 3 1 0 1 0 0 2 0 0 19 1 2209.1419 P27694 P27694 235 253 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 3 0.037477 36.523 By MS/MS 3 0 1 1 6538200 0 0 6538200 1265 679 1325 5564 4604 4604 1 0 0 1268100 ATAGDTHLGGEDFDNR DVSILTIDDGIFEVKATAGDTHLGGEDFDN TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK K A T N R L 2 1 1 3 0 0 1 3 1 0 1 0 0 1 0 0 2 0 0 0 0 0 16 0 1674.7234 P0DMV9;P0DMV8;P17066;P48741 P0DMV9 221 236 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2;3 1.9294E-74 245.15 By MS/MS By MS/MS By MS/MS 5.58 2.33 3 2 2 1 1 1 1 1 2 2 8 129380000 13609000 12884000 102880000 1266 501;582 1326 5565;5566;5567;5568;5569;5570;5571;5572;5573;5574;5575;5576 4605;4606;4607;4608;4609;4610;4611 4607 7 13879000 5144000 30776000 ATAPQTQHVSPMR EARLNVLEKSSPGHRATAPQTQHVSPMRQV HRATAPQTQHVSPMRQVEPPAKKPATPAED R A T M R Q 2 1 0 0 0 2 0 0 1 0 0 0 1 0 2 1 2 0 0 1 0 0 13 0 1422.7038 P29692 P29692 124 136 EEF1D Elongation factor 1-delta yes yes 3 0.00020478 113.24 By MS/MS By MS/MS 6 0 2 1 1 14615000 0 4570200 10044000 1267 702 1327 5577;5578 4612;4613 4613 2 0 1582100 1502700 ATAPVPTVGEGYGYGHESELSQASAAAR ASTSYYGRDRSPLRRATAPVPTVGEGYGYG YGHESELSQASAAARNSLYDMARYEREQYA R A T A R N 6 1 0 0 0 1 3 4 1 0 1 0 0 0 2 3 2 0 2 2 0 0 28 0 2775.31 Q9BWF3 Q9BWF3 314 341 RBM4 RNA-binding protein 4 yes yes 3 1.6414E-54 187.17 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 51352000 0 14787000 36565000 1268 1924 1328 5579;5580;5581;5582;5583 4614;4615;4616 4616 3 0 4562200 5266500 ATAPYNYSYIFK ______________________________ ______________________________ M A T F K Y 2 0 1 0 0 0 0 0 0 1 0 1 0 1 1 1 1 0 3 0 0 0 12 0 1436.6976 P61106 P61106 2 13 RAB14 Ras-related protein Rab-14 yes yes 2 0.036317 67.113 By matching By MS/MS 7 0 2 1 1 11607000 305490 0 11301000 1269 979 1329 5584;5585 4617 4617 1 658390 0 2005400 ATATISAKPQITNPK RPKADDTSAATIEKKATATISAKPQITNPK ATATISAKPQITNPKAEITRFVPTALRVRR K A T P K A 3 0 1 0 0 1 0 0 0 2 0 2 0 0 2 1 3 0 0 0 0 0 15 1 1539.8621 Q9Y2W2 Q9Y2W2 558 572 WBP11 WW domain-binding protein 11 yes yes 2;3 0.0022904 121.08 By MS/MS By MS/MS 3 0 2 1 1 5531600 0 1679200 3852400 1270 2253 1330 5586;5587 4618;4619 4619 2 0 715830 747190 ATATPVPPR ______________________________ ______________________________ M A T P R M 2 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 9 0 908.50797 P20700 P20700 2 10 LMNB1 Lamin-B1 yes yes 2 0.0011961 103.83 By MS/MS By MS/MS 3 0 2 1 1 41375000 0 19438000 21937000 1271 619 1331 5588;5589 4620;4621;4622 4621 3 0 8286200 4254700 ATAVMPDGQFK SSGNAKIGHPAPNFKATAVMPDGQFKDISL PNFKATAVMPDGQFKDISLSDYKGKYVVFF K A T F K D 2 0 0 1 0 1 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 11 0 1163.5645 Q06830 Q06830 17 27 PRDX1 Peroxiredoxin-1 yes yes 2 0.0012192 112.11 By MS/MS By MS/MS By MS/MS 9.2 1.17 1 1 3 1 3 1 32459000 3050000 21741000 7668100 1272 1173 1332 5590;5591;5592;5593;5594 4623;4624;4625 4624 3 5556600 18933000 16771000 ATAVVDGAFK ASGNARIGKPAPDFKATAVVDGAFKEVKLS APDFKATAVVDGAFKEVKLSDYKGKYVVLF K A T F K E 3 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 2 0 0 10 0 977.5182 P32119 P32119 17 26 PRDX2 Peroxiredoxin-2 yes yes 2 0.017878 84.213 By MS/MS By MS/MS 8.67 1.25 1 1 1 2 1 47258000 27947000 0 19311000 1273 727 1333 5595;5596;5597 4626;4627;4628 4626 3 35316000 0 3426700 ATDAEADVASLNR ALKDAQEKLELAEKKATDAEADVASLNRRI KKATDAEADVASLNRRIQLVEEELDRAQER K A T N R R 4 1 1 2 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 0 1331.6317 P09493;CON__Q3SX28;P07951 P09493 78 90 TPM1;TPM2 Tropomyosin alpha-1 chain;Tropomyosin beta chain yes no 2 5.0038E-171 300.43 By MS/MS By MS/MS 6 0 2 1 1 28817000 0 16871000 11946000 + 1274 485 1334 5598;5599 4629;4630 4629 2 0 5840200 1787300 ATDAEADVASLNRR ALKDAQEKLELAEKKATDAEADVASLNRRI KATDAEADVASLNRRIQLVEEELDRAQERL K A T R R I 4 2 1 2 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 14 1 1487.7328 P09493;CON__Q3SX28;P07951 P09493 78 91 TPM1;TPM2 Tropomyosin alpha-1 chain;Tropomyosin beta chain yes no 2 0.00075303 122.42 By MS/MS 6 0 1 1 6521200 0 6521200 0 + 1275 485 1335 5600 4631 4631 1 0 2257400 0 ATDTSQGELVHPK ______________________________ ______________________________ M A T P K A 1 0 0 1 0 1 1 1 1 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1381.6838 Q5SSJ5 Q5SSJ5 2 14 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.00012821 131.82 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 109310000 0 37952000 71355000 1276 1445 1336 5601;5602;5603;5604 4632;4633;4634 4632 3 0 16315000 13759000 ATEDEGSEQKIPEATNR IPMNPMCIYRSPEKKATEDEGSEQKIPEAT EDEGSEQKIPEATNRRVWELSKANSRFATT K A T N R R 2 1 1 1 0 1 4 1 0 1 0 1 0 0 1 1 2 0 0 0 0 0 17 1 1873.8654 P01008 P01008 62 78 SERPINC1 Antithrombin-III yes yes 3 0.0016009 72.433 By MS/MS 9 0 1 1 2577700 2577700 0 0 1277 366 1337 5605 4635 4635 1 1446900 0 0 ATEDEYYR WVQRALHFAISEYNKATEDEYYRRPLQVLR AISEYNKATEDEYYRRPLQVLRAREQTFGG K A T Y R R 1 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 8 0 1045.4353 P01036;P09228 P01036 58 65 CST4;CST2 Cystatin-S;Cystatin-SA yes no 2 2.5318E-06 160.91 By MS/MS 2.5 1.12 1 1 1 1 4 13130000 13130000 0 0 1278 372 1338 5606;5607;5608;5609 4636;4637 4636 2 13462000 0 0 ATEEKKPETEAAR ______________________________ ______________________________ M A T A R A 3 1 0 0 0 0 4 0 0 0 0 2 0 0 1 0 2 0 0 0 0 0 13 2 1458.7314 P61964 P61964 2 14 WDR5 WD repeat-containing protein 5 yes yes 2;3 3.3894E-05 148.68 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 33784000 0 29096000 4688100 1279 1001 1339 5610;5611;5612;5613;5614 4638;4639;4640;4641;4642 4639 5 0 9905100 679880 ATEHLSTLSEK LKENGGARLAEYHAKATEHLSTLSEKAKPA YHAKATEHLSTLSEKAKPALEDLRQGLLPV K A T E K A 1 0 0 0 0 0 2 0 1 0 2 1 0 0 0 2 2 0 0 0 0 0 11 0 1214.6143 P02647 P02647 220 230 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 6.1439E-07 153.97 By MS/MS 6 3.46 1 1 1 2 1 6 99299000 99299000 0 0 1280 389 1340 5615;5616;5617;5618;5619;5620 4643;4644;4645;4646 4645 4 60788000 0 0 ATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAK ______________________________ PGHYGAWAAQELQAKLAEIGAPIQGNREEL M A T A K L 6 0 0 0 0 3 4 2 2 0 3 2 0 0 9 0 1 1 1 0 0 0 34 1 3651.8474 Q13435 Q13435 2 35 SF3B2 Splicing factor 3B subunit 2 yes yes 4 6.9124E-40 117.52 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 44236000 0 22228000 22008000 1281 1248 1341 5621;5622;5623 4647;4648 4648 2 0 10095000 4973400 ATENDIANFFSPLNPIR FHGGHFVHMRGLPFRATENDIANFFSPLNP ENDIANFFSPLNPIRVHIDIGADGRATGEA R A T I R V 2 1 3 1 0 0 1 0 0 2 1 0 0 2 2 1 1 0 0 0 0 0 17 0 1917.9585 P31942 P31942 206 222 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2;3 1.8374E-200 302.87 By MS/MS By MS/MS By MS/MS 4.69 2.13 3 2 3 3 4 5 4 2 1 13 12 1003900000 1478500 415000000 587430000 1282 721 1342 5624;5625;5626;5627;5628;5629;5630;5631;5632;5633;5634;5635;5636;5637;5638;5639;5640;5641;5642;5643;5644;5645;5646;5647;5648;5649 4649;4650;4651;4652;4653;4654;4655;4656;4657;4658;4659;4660;4661;4662;4663;4664;4665;4666;4667;4668;4669;4670;4671;4672;4673;4674;4675 4658 27 1968600 144370000 88906000 ATENDIYNFFSPLNPMR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPMRVHIEIGPDGRVTGEA R A T M R V 1 1 3 1 0 0 1 0 0 1 1 0 1 2 2 1 1 0 1 0 0 0 17 0 2027.9411 P55795 P55795 300 316 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2;3 2.1401E-48 225.79 By MS/MS By MS/MS By MS/MS 4.42 0.64 8 3 1 2 6 4 81895000 2838300 35043000 44014000 1283 944 1343;1344 5650;5651;5652;5653;5654;5655;5656;5657;5658;5659;5660;5661 4676;4677;4678;4679;4680;4681;4682;4683;4684 4681 454 9 2214400 10006000 7159400 ATENDIYNFFSPLNPVR STTGHCVHMRGLPYRATENDIYNFFSPLNP ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA R A T V R V 1 1 3 1 0 0 1 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 17 0 1995.969 P31943;P52597 P31943 300 316 HNRNPH1;HNRNPF Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed no no 2;3 1.9816E-256 329.77 By MS/MS By MS/MS By MS/MS 5.12 2.17 2 3 2 6 6 4 5 3 2 4 13 16 1310800000 36517000 420740000 853530000 1284 722;910 1345 5662;5663;5664;5665;5666;5667;5668;5669;5670;5671;5672;5673;5674;5675;5676;5677;5678;5679;5680;5681;5682;5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693;5694 4685;4686;4687;4688;4689;4690;4691;4692;4693;4694;4695;4696;4697;4698;4699;4700;4701;4702;4703;4704;4705;4706;4707;4708;4709;4710;4711;4712;4713;4714;4715;4716;4717;4718;4719;4720;4721;4722;4723;4724;4725 4713 41 28820000 122270000 130320000 ATEPQMVLFNLYDDWLK QACLKVEKFGDLILKATEPQMVLFNLYDDW EPQMVLFNLYDDWLKTISSYTAFSRLILIL K A T L K T 1 0 1 2 0 1 1 0 0 0 3 1 1 1 1 0 1 1 1 1 0 0 17 0 2082.0132 Q6P2Q9 Q6P2Q9 1909 1925 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 0.00039045 86.488 By matching By MS/MS 1.4 0.49 3 2 1 4 22163000 0 173630 21989000 1285 1490 1346 5695;5696;5697;5698;5699 4726;4727;4728 4727 3 0 84870 4815000 ATETVELHK ______________________________ ______________________________ M A T H K L 1 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 2 0 0 1 0 0 9 0 1026.5346 P82979 P82979 2 10 SARNP SAP domain-containing ribonucleoprotein yes yes 2 0.00018869 137.9 By MS/MS By MS/MS 6 0 2 1 1 117370000 0 14381000 102990000 1286 1105 1347 5700;5701 4729;4730 4729 2 0 4978100 15408000 ATFDAISK TSARGCTATLGNFAKATFDAISKTYSYLTP TLGNFAKATFDAISKTYSYLTPDLWKETVF K A T S K T 2 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 8 0 851.43888 P15880 P15880 239 246 RPS2 40S ribosomal protein S2 yes yes 1;2 0.011759 113.26 By MS/MS By MS/MS 6 0 3 2 1 77951000 0 63041000 14910000 1287 571 1348 5702;5703;5704 4731;4732 4732 2 0 21823000 2230700 ATFSGPAGPILSLNPQEDVEFQK ______________________________ PILSLNPQEDVEFQKEVAQVRKRITQRKKQ M A T Q K E 2 0 1 1 0 2 2 2 0 1 2 1 0 2 3 2 1 0 0 1 0 0 23 0 2444.2224 Q9BYG3 Q9BYG3 2 24 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 2.4896E-21 154.6 By MS/MS 6 0 1 1 1464800 0 1464800 0 1288 1936 1349 5705 4733 4733 1 0 507060 0 ATFYGEQVDYYK ELVKLQQTYAALNSKATFYGEQVDYYKSYI NSKATFYGEQVDYYKSYIKTCLDNLASKGK K A T Y K S 1 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 1 0 3 1 0 0 12 0 1482.6667 P46940 P46940 1517 1528 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.0014485 113.15 By MS/MS 2 0 1 1 12577000 0 12577000 0 1289 835 1350 5706 4734 4734 1 0 5663600 0 ATGANATPLDFPSK ______________________________ MATGANATPLDFPSKKRKRSRWNQDTMEQK M A T S K K 3 0 1 1 0 0 0 1 0 0 1 1 0 1 2 1 2 0 0 0 0 0 14 0 1388.6936 Q15637 Q15637 2 15 SF1 Splicing factor 1 yes yes 2 0.00066014 107.34 By MS/MS 3 0 1 1 4438600 0 4438600 0 1290 1376 1351 5707 4735 4735 1 0 1892200 0 ATGANATPLDFPSKK ______________________________ ATGANATPLDFPSKKRKRSRWNQDTMEQKT M A T K K R 3 0 1 1 0 0 0 1 0 0 1 2 0 1 2 1 2 0 0 0 0 0 15 1 1516.7886 Q15637 Q15637 2 16 SF1 Splicing factor 1 yes yes 2 0.0076889 69.864 By MS/MS By matching 3.5 0.5 1 1 1 1 6922100 0 2653600 4268500 1291 1376 1352 5708;5709 4736 4736 1 0 1131200 697190 ATGATQQDANASSLLDIYSFWLK LRDNQLSEVANKFAKATGATQQDANASSLL ANASSLLDIYSFWLKSAKVPERKLQANGPV K A T L K S 4 0 1 2 0 2 0 1 0 1 3 1 0 1 0 3 2 1 1 0 0 0 23 0 2499.2282 Q14978 Q14978 37 59 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 2 1.9969E-64 218.98 By MS/MS 1.5 0.5 1 1 2 44905000 0 0 44905000 1292 1326 1353 5710;5711 4737 4737 1 0 0 10132000 ATGEADVEFVTHEDAVAAMSK LNPIRVHIDIGADGRATGEADVEFVTHEDA VEFVTHEDAVAAMSKDKNNMQHRYIELFLN R A T S K D 5 0 0 2 0 0 3 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2176.9947 P31942 P31942 233 253 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2;3 1.4265E-102 255.71 By MS/MS By MS/MS 6.14 0.35 6 1 3 4 148340000 0 34265000 114070000 1293 721 1354;1355 5712;5713;5714;5715;5716;5717;5718 4738;4739;4740;4741;4742 4742 317 5 0 11861000 17226000 ATGGGAEEER ______________________________ ______________________________ M A T E R K 2 1 0 0 0 0 3 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 10 0 975.42575 Q9NUD5 Q9NUD5 2 11 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 2 0.0038399 91.584 By MS/MS 5 0 1 1 2078600 0 2078600 0 1294 2057 1356 5719 4743 4743 1 0 535800 0 ATGGGLSSVGGGSSTIK SGLGVGGGFSSSSGRATGGGLSSVGGGSST GGGLSSVGGGSSTIKYTTTSSSSRKSYKH_ R A T I K Y 1 0 0 0 0 0 0 6 0 1 1 1 0 0 0 4 2 0 0 1 0 0 17 0 1434.7314 CON__P04259 CON__P04259 534 550 no no 2 2.3088E-19 188.09 By MS/MS By matching By MS/MS 5.62 2.87 1 1 1 3 1 1 1 1 1 2 10 1 2 162180000 145630000 3792000 12758000 + 1295 47 1357 5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732 4744;4745;4746;4747;4748;4749;4750;4751;4752;4753;4754;4755 4752 12 145220000 1258400 6451800 ATGGGLSSVGGGSSTIKYTTTSSSSR SGLGVGGGFSSSSGRATGGGLSSVGGGSST GSSTIKYTTTSSSSRKSYKH__________ R A T S R K 1 1 0 0 0 0 0 6 0 1 1 1 0 0 0 8 5 0 1 1 0 0 26 1 2405.167 CON__P04259 CON__P04259 534 559 no no 3 8.5905E-29 144.26 By MS/MS 8 2 1 1 2 10495000 10495000 0 0 + 1296 47 1358 5733;5734 4756;4757 4756 2 15076000 0 0 ATGYLELSNWPEVAPDPSVR DHFQLGTLSHTLNIKATGYLELSNWPEVAP ELSNWPEVAPDPSVRNVEVIELAKEWTPAG K A T V R N 2 1 1 1 0 0 2 1 0 0 2 0 0 0 3 2 1 1 1 2 0 0 20 0 2200.08 O00203 O00203 630 649 AP3B1 AP-3 complex subunit beta-1 yes yes 2 1.359E-70 234.85 By MS/MS 2 0.816 1 1 1 3 11668000 0 0 11668000 1297 111 1359 5735;5736;5737 4758 4758 1 0 0 2536800 ATIAGGGVIPHIHK QLAIRGDEELDSLIKATIAGGGVIPHIHKS KATIAGGGVIPHIHKSLIGKKGQQKTA___ K A T H K S 2 0 0 0 0 0 0 3 2 3 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1369.783 Q71UI9;P0C0S5 Q71UI9 103 116 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2;3 4.1718E-06 163.65 By MS/MS By MS/MS By MS/MS 7.87 1.9 1 2 5 6 5 4 4 8 11 6108800000 173350000 1687900000 4247600000 1298 496 1360 5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759;5760 4759;4760;4761;4762;4763;4764;4765;4766;4767;4768;4769;4770;4771;4772;4773;4774;4775;4776;4777;4778;4779;4780;4781;4782;4783;4784;4785;4786;4787;4788;4789;4790;4791;4792;4793;4794;4795 4773 37 154990000 1008300000 921840000 ATIAGGGVIPHIHKSLIGK QLAIRGDEELDSLIKATIAGGGVIPHIHKS GGGVIPHIHKSLIGKKGQQKTA________ K A T G K K 2 0 0 0 0 0 0 4 2 4 1 2 0 0 1 1 1 0 0 1 0 0 19 1 1868.0996 Q71UI9;P0C0S5 Q71UI9 103 121 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2;3;4 0.0018488 94.717 By MS/MS By MS/MS 8 0 4 2 2 31247000 0 20892000 10355000 1299 496 1361 5761;5762;5763;5764 4796;4797;4798;4799 4799 4 0 9505100 1587500 ATIGADFLTK LMNQYVNKKFSNQYKATIGADFLTKEVMVD SNQYKATIGADFLTKEVMVDDRLVTMQIWD K A T T K E 2 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1035.5601 P51149 P51149 39 48 RAB7A Ras-related protein Rab-7a yes yes 2 0.045505 73.985 By matching By MS/MS 7 0 2 1 1 26404000 4003900 0 22400000 1300 890 1362 5765;5766 4800 4800 1 8629400 0 3974800 ATILDLSCNK DLNEVPVKELAALPKATILDLSCNKLTTLP AALPKATILDLSCNKLTTLPSDFCGLTHLV K A T N K L 1 0 1 1 1 0 0 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 10 0 1133.5751 Q96AG4 Q96AG4 41 50 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.0020714 106.93 By MS/MS 6 0 1 1 8700600 0 0 8700600 1301 1751 1363 5767 4801 4801 1 0 0 1301700 ATIQFHQPQR KAHFLQLRKDFDQKRATIQFHQPQRFKDEL FDQKRATIQFHQPQRFKDELWRIQEKLECY R A T Q R F 1 1 0 0 0 3 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 10 0 1224.6364 Q8IUF8 Q8IUF8 133 142 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 3 0.0033459 83.998 By MS/MS 4.5 0.5 1 1 2 6533300 0 6533300 0 1302 1567 1364 5768;5769 4802 4802 1 0 2077100 0 ATIQGVLR LSTYIKFINLFPETKATIQGVLRAGSQLRN NLFPETKATIQGVLRAGSQLRNADVELQQR K A T L R A 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 0 856.51305 O95782 O95782 557 564 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.065278 69.176 By MS/MS 2 0 1 1 3931400 0 3931400 0 1303 339 1365 5770 4803 4803 1 0 1770400 0 ATISALEAK AKLQELEGAVKSKFKATISALEAKIGQLEE VKSKFKATISALEAKIGQLEEQLEQEAKER K A T A K I 3 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 9 0 902.5073 P35580 P35580 1814 1822 MYH10 Myosin-10 yes yes 2 0.0038336 99.136 By MS/MS 1 0 1 1 34402000 0 34402000 0 1304 753 1366 5771 4804 4804 1 0 16815000 0 ATISDEEIER APSAARSLPSASTSKATISDEEIERQLKAL ASTSKATISDEEIERQLKALGVD_______ K A T E R Q 1 1 0 1 0 0 3 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 10 0 1161.5513 Q9UQN3 Q9UQN3 196 205 CHMP2B Charged multivesicular body protein 2b yes yes 2 0.0061218 95.502 By MS/MS 6 0 1 1 16759000 0 0 16759000 1305 2223 1367 5772 4805 4805 1 0 0 2507400 ATLENDFVVLK EEEYKSKYEEEAHRRATLENDFVVLKKDVD AHRRATLENDFVVLKKDVDGVFLSKMELEG R A T L K K 1 0 1 1 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 11 0 1247.6762 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 209 219 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.02047 83.948 By MS/MS 9.5 0.5 1 1 2 6580300 6580300 0 0 + 1306 94 1368 5773;5774 4806 4806 1 5507800 0 0 ATLENDFVVLKK EEEYKSKYEEEAHRRATLENDFVVLKKDVD HRRATLENDFVVLKKDVDGVFLSKMELEGK R A T K K D 1 0 1 1 0 0 1 0 0 0 2 2 0 1 0 0 1 0 0 2 0 0 12 1 1375.7711 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 209 220 KRT78 Keratin, type II cytoskeletal 78 yes no 3 0.026617 56.087 By MS/MS By matching 5.5 4.5 2 2 2 2 7927000 5442400 0 2484600 + 1307 94 1369 5775;5776;5777;5778 4807;4808 4807 2 6677300 0 1325000 ATLKDQLIYNLLK ______________________________ ______________________________ M A T L K E 1 0 1 1 0 1 0 0 0 1 4 2 0 0 0 0 1 0 1 0 0 0 13 1 1531.8974 P00338 P00338 2 14 LDHA L-lactate dehydrogenase A chain yes yes 2 2.5032E-123 214.67 By MS/MS 6 0 1 1 0 0 0 0 1308 356 1370 5779 4809 4809 1 0 0 0 ATLNAFLYR FLRKRATEKISEDLRATLNAFLYRTGQHSN ISEDLRATLNAFLYRTGQHSNKFMLVLASN R A T Y R T 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1067.5764 Q9NVI7 Q9NVI7 479 487 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 4.4411E-11 144.38 By MS/MS By MS/MS By MS/MS 3 0.632 1 3 1 1 3 1 85476000 3958700 18644000 62873000 1309 2066 1371 5780;5781;5782;5783;5784 4810;4811;4812;4813;4814 4813 5 4567500 7987300 12194000 ATLQEILPEVLK QPRKALVDILSEVSKATLQEILPEVLKADL VSKATLQEILPEVLKADLNIILSSPEQLEL K A T L K A 1 0 0 0 0 1 2 0 0 1 3 1 0 0 1 0 1 0 0 1 0 0 12 0 1352.7915 Q9BQG0 Q9BQG0 191 202 MYBBP1A Myb-binding protein 1A yes yes 2 0.0010159 117.99 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 42634000 0 25560000 17074000 1310 1885 1372 5785;5786;5787;5788;5789 4815;4816;4817 4816 3 0 11643000 3713200 ATLSAEVYR RIWNNEDVNLDKVFKATLSAEVYRILSVQG LDKVFKATLSAEVYRILSVQGTEPLVLFKE K A T Y R I 2 1 0 0 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 9 0 1008.524 Q9H8H0 Q9H8H0 103 111 NOL11 Nucleolar protein 11 yes yes 2 2.6407E-11 170.66 By matching By MS/MS By MS/MS 3 0 3 1 1 1 40535000 1602200 16169000 22764000 1311 1995 1373 5790;5791;5792 4818;4819 4818 2 1848600 6893000 4415100 ATMQNLNDR SSFGGVDGLLAGGEKATMQNLNDRLASYLD LAGGEKATMQNLNDRLASYLDKVRALEEAN K A T D R L 1 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1061.4924 Q04695;CON__Q04695;CON__Q99PS0 Q04695 86 94 KRT17 Keratin, type I cytoskeletal 17 no no 2 2.9412E-11 170.22 By MS/MS By MS/MS By MS/MS 4.71 2.52 1 2 2 2 3 1 1 1 1 9 3 2 117940000 68860000 28956000 20123000 + 1312 73 1374 5793;5794;5795;5796;5797;5798;5799;5800;5801;5802;5803;5804;5805;5806 4820;4821;4822;4823;4824;4825;4826;4827 4820 8 79003000 7930600 2989100 ATNANPSQLFGTLMILK AVGKVIYEGLTNYEKATNANPSQLFGTLMI NANPSQLFGTLMILKSACSNNPSYIDRLIS K A T L K S 2 0 2 0 0 1 0 1 0 1 3 1 1 1 1 1 2 0 0 0 0 0 17 0 1817.971 Q9Y4A5 Q9Y4A5 2260 2276 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.0090592 68.676 By MS/MS 1 0 1 1 831700 0 831700 0 1313 2285 1375 5807 4828 4828 1 0 406520 0 ATNESEDEIPQLVPIGK EHGKKKRGRGKAQVKATNESEDEIPQLVPI NESEDEIPQLVPIGKKTPANEKVEIQKHAT K A T G K K 1 0 1 1 0 1 3 1 0 2 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1838.9262 O76021 O76021 357 373 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 7.7779E-06 127.85 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 46743000 0 5035900 41707000 1314 295 1376 5808;5809;5810;5811 4829;4830 4830 2 0 2146800 8076800 ATNFLAHEK ______________________________ ______________________________ M A T E K I 2 0 1 0 0 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1029.5243 P29692 P29692 2 10 EEF1D Elongation factor 1-delta yes yes 2 6.5044E-05 142.04 By MS/MS By MS/MS By MS/MS 5 1.15 1 1 1 3 1 1 4 155370000 10505000 22287000 122570000 1315 702 1377 5812;5813;5814;5815;5816;5817 4831;4832;4833;4834 4834 4 13988000 7715100 18514000 ATNIEQIFR ______________________________ ______________________________ M A T F R S 1 1 1 0 0 1 1 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 9 0 1090.5771 P18583 P18583 2 10 SON Protein SON yes yes 2 7.773E-12 172.21 By MS/MS By MS/MS By MS/MS 2.83 2.27 3 1 2 1 3 2 21515000 1454700 13471000 6589800 1316 596 1378 5818;5819;5820;5821;5822;5823 4835;4836;4837;4838;4839 4839 5 1454700 6247200 1295000 ATNIEVLSNTFQFTNEAR VRFNISTDRRDKLERATNIEVLSNTFQFTN IEVLSNTFQFTNEAREMGVIAAMRDGFGFI R A T A R E 2 1 3 0 0 1 2 0 0 1 1 0 0 2 0 1 3 0 0 1 0 0 18 0 2054.0069 O75534 O75534 331 348 CSDE1 Cold shock domain-containing protein E1 yes yes 2 1.9181E-156 286.65 By MS/MS By matching 2.5 0.5 1 1 1 1 6505400 0 3146000 3359400 1317 271 1379 5824;5825 4840 4840 1 0 1416700 651560 ATNTDLLLAYANLMLLTLSTR LESLQCLESDKSDWRATNTDLLLAYANLML LLAYANLMLLTLSTRDVQESRELLQSFDSA R A T T R D 3 1 2 1 0 0 0 0 0 0 7 0 1 0 0 1 4 0 1 0 0 0 21 0 2307.2508 A6NKT7;Q7Z3J3;O14715;P0DJD0;P0DJD1;P49792 P49792 230 250 RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;E3 SUMO-protein ligase RanBP2 no no 2;3 2.5978E-14 138.03 By MS/MS 1.5 0.5 2 2 4 4612100 0 0 4612100 1318 871;17 1380 5826;5827;5828;5829 4841;4842;4843 4842 3 0 0 1029400 ATPLAVNSAASLWGPYK ______________________________ PLAVNSAASLWGPYKDIWHKVGNALWRRQP M A T Y K D 4 0 1 0 0 0 0 1 0 0 2 1 0 0 2 2 1 1 1 1 0 0 17 0 1744.9148 Q92621 Q92621 2 18 NUP205 Nuclear pore complex protein Nup205 yes yes 2 3.9307E-06 125.28 By MS/MS 1 0 1 1 921740 0 921740 0 1319 1714 1381 5830 4844 4844 1 0 450530 0 ATPLAVNSAASLWGPYKDIWHK ______________________________ SAASLWGPYKDIWHKVGNALWRRQPEAVHL M A T H K V 4 0 1 1 0 0 0 1 1 1 2 2 0 0 2 2 1 2 1 1 0 0 22 1 2424.259 Q92621 Q92621 2 23 NUP205 Nuclear pore complex protein Nup205 yes yes 3 1.8486E-10 99.407 By MS/MS 1 0 1 1 5843100 0 0 5843100 1320 1714 1382 5831 4845 4845 1 0 0 1259000 ATPMPSRPSTTPFIDK SGTAPAAGVVPSRVKATPMPSRPSTTPFID TPMPSRPSTTPFIDKKPTSAKPSSTTPRLS K A T D K K 1 1 0 1 0 0 0 0 0 1 0 1 1 1 4 2 3 0 0 0 0 0 16 1 1744.8818 P27816 P27816 891 906 MAP4 Microtubule-associated protein 4 yes yes 2;3 0.00025755 130.19 By MS/MS By MS/MS 3 1.31 1 2 1 2 1 1 6 101330000 0 11434000 89895000 1321 683 1383 5832;5833;5834;5835;5836;5837;5838 4846;4847;4848;4849 4848 4 0 3794600 18964000 ATPSENLVPSSAR PRAHSRDSSDSADGRATPSENLVPSSARVD GRATPSENLVPSSARVDKPPSVLPYFNRPP R A T A R V 2 1 1 0 0 0 1 0 0 0 1 0 0 0 2 3 1 0 0 1 0 0 13 0 1327.6732 Q8N684 Q8N684 202 214 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 0.00094209 115.42 By MS/MS By MS/MS 4 0 2 1 1 42428000 0 23572000 18856000 1322 1610 1384 5839;5840 4850;4851 4850 2 0 7822600 3079900 ATQALVLAPTR TFAISILQQIELDLKATQALVLAPTRELAQ LDLKATQALVLAPTRELAQQIQKVVMALGD K A T T R E 3 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 11 0 1139.6663 P60842 P60842 100 110 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2 0.00021443 136.52 By MS/MS By MS/MS By MS/MS 6.5 1.71 2 2 1 1 1 3 2 41767000 9105900 25504000 7157000 1323 967 1385 5841;5842;5843;5844;5845;5846 4852;4853;4854;4855 4853 4 7295000 7071100 10200000 ATQASQEY TSATVGPKAPSGGKKATQASQEY_______ APSGGKKATQASQEY_______________ K A T E Y - 2 0 0 0 0 2 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 8 0 896.38758 P16104 P16104 136 143 H2AFX Histone H2AX yes yes 1 3.4933E-08 169.57 By MS/MS 8 0 1 1 4578300 0 4578300 0 1324 574 1386 5847 4856 4856 1 0 2083000 0 ATQEWLEK QLQDALNELTEEHSKATQEWLEKQAQLEKE LTEEHSKATQEWLEKQAQLEKELSAALQDK K A T E K Q 1 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 1003.4975 Q14980 Q14980 351 358 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.034597 76.774 By MS/MS By MS/MS 1 0 2 1 1 32789000 0 32789000 0 1325 1327 1387 5848;5849 4857;4858 4857 2 0 16027000 0 ATQGPGLAAR RGSSEEDEDARTPDRATQGPGLAARRWWAA RTPDRATQGPGLAARRWWAASPAPARLPSS R A T A R R 3 1 0 0 0 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 10 0 940.50903 Q8NC56 Q8NC56 151 160 LEMD2 LEM domain-containing protein 2 yes yes 2 0.048503 73.208 By MS/MS 4 0 1 1 1087300 0 0 1087300 1326 1631 1388 5850 4859 4859 1 0 0 177600 ATQMPEGGQGAPPMYQLYK ACELLHSMVMFMLGKATQMPEGGQGAPPMY PEGGQGAPPMYQLYKRTFPVLLRLACDVDQ K A T Y K R 2 0 0 0 0 3 1 3 0 0 1 1 2 0 3 0 1 0 2 0 0 0 19 0 2065.9601 P78527 P78527 945 963 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 6.2627E-09 133.15 By MS/MS 1 0 1 1 9576600 0 0 9576600 1327 1089 1389 5851 4860 4860 1 0 0 2063400 ATQQQHDFTLTQTADGR EGSLSARWPVAGQIRATQQQHDFTLTQTAD QQQHDFTLTQTADGRSSFDWLTGSSTDPLV R A T G R S 2 1 0 2 0 4 0 1 1 0 1 0 0 1 0 0 4 0 0 0 0 0 17 0 1916.8977 P78527 P78527 2637 2653 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.9132E-227 315.21 By matching By MS/MS By MS/MS 1.5 0.764 4 1 1 1 1 4 71386000 2207400 14226000 54952000 1328 1089 1390 5852;5853;5854;5855;5856;5857 4861;4862;4863 4862 3 2207400 6953600 11739000 ATQVEPLLPGGATLLQAEEHGGLVR ______________________________ GATLLQAEEHGGLVRKKPPPAPEGKGEPGP M A T V R K 3 1 0 0 0 2 3 4 1 0 5 0 0 0 2 0 2 0 0 2 0 0 25 0 2555.3708 Q6PKG0 Q6PKG0 2 26 LARP1 La-related protein 1 yes yes 2;3 8.9003E-74 223.97 By MS/MS By MS/MS 1.86 0.99 3 3 1 4 3 43720000 0 25692000 18028000 1329 1497 1391 5858;5859;5860;5861;5862;5863;5864 4864;4865;4866;4867;4868;4869 4867 6 0 11734000 3233100 ATSEVPGSQASPNPVPGDGLHR LEMGIKAARPEIADRATSEVPGSQASPNPV SQASPNPVPGDGLHRAGFDAFMTGYVMAYV R A T H R A 2 1 1 1 0 1 1 3 1 0 1 0 0 0 4 3 1 0 0 2 0 0 22 0 2172.056 Q96GM8 Q96GM8 418 439 TOE1 Target of EGR1 protein 1 yes yes 3 1.2383E-09 95.703 By MS/MS 4 0 1 1 15854000 0 15854000 0 1330 1792 1392 5865 4870 4870 1 0 5261400 0 ATSFLLALEPELEAR AEVVLAHLGGGSTSRATSFLLALEPELEAR ATSFLLALEPELEARLAHLGVQVKGEDEEE R A T A R L 3 1 0 0 0 0 3 0 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1658.8879 P04843 P04843 66 80 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.026342 66.267 By matching By MS/MS 3 0.816 1 1 1 1 2 10348000 0 444830 9902800 1331 419 1393 5866;5867;5868 4871 4871 1 0 200310 1850400 ATSLAWHPTHPSTVAVGSK DSYRILQKAAPFDRRATSLAWHPTHPSTVA AWHPTHPSTVAVGSKGGDIMLWNFGIKDKP R A T S K G 3 0 0 0 0 0 0 1 2 0 1 1 0 0 2 3 3 1 0 2 0 0 19 0 1946.001 Q92466 Q92466 114 132 DDB2 DNA damage-binding protein 2 yes yes 2;3;4 1.8786E-05 99.834 By matching By MS/MS 4.75 0.433 1 3 1 3 77238000 0 1578800 75659000 1332 1704 1394 5869;5870;5871;5872 4872;4873;4874 4873 3 0 523940 10553000 ATSLGSNTYNR ______________________________ ______________________________ M A T N R Q 1 1 2 0 0 0 0 1 0 0 1 0 0 0 0 2 2 0 1 0 0 0 11 0 1182.5629 Q9NW64 Q9NW64 2 12 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2 9.5163E-10 165.15 By MS/MS By MS/MS 5 1.22 2 1 1 3 1 16933000 0 16933000 0 1333 2076 1395 5873;5874;5875;5876 4875;4876;4877;4878 4875 4 0 6249500 0 ATSNVFAMFDQSQIQEFK SSKRTKTKTKKRPQRATSNVFAMFDQSQIQ NVFAMFDQSQIQEFKEAFNMIDQNRDGFID R A T F K E 2 0 1 1 0 3 1 0 0 1 0 1 1 3 0 2 1 0 0 1 0 0 18 0 2089.9779 P19105;O14950;P24844 P19105 17 34 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2;3 1.5046E-205 310.34 By MS/MS By MS/MS 7.59 0.771 1 7 7 2 9 8 183860000 0 78805000 105060000 1334 154;652 1396;1397 5877;5878;5879;5880;5881;5882;5883;5884;5885;5886;5887;5888;5889;5890;5891;5892;5893 4879;4880;4881;4882;4883;4884;4885;4886;4887;4888;4889;4890;4891 4886 72 13 0 37671000 17486000 ATSSSSGSLSATGR LKLSPSPSSRVTVSRATSSSSGSLSATGRL RATSSSSGSLSATGRLGRSKRKRLEVEEPL R A T G R L 2 1 0 0 0 0 0 2 0 0 1 0 0 0 0 6 2 0 0 0 0 0 14 0 1267.6004 Q03252 Q03252 417 430 LMNB2 Lamin-B2 yes yes 2 0.00029148 149.96 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 35470000 0 2934300 32536000 1335 1156 1398 5894;5895;5896;5897;5898 4892;4893 4893 2 0 1281800 6291800 ATTAALLLEAQAATGFLVDPVR EKVSIYEAMRRGLLRATTAALLLEAQAATG LEAQAATGFLVDPVRNQRLYVHEAVKAGVV R A T V R N 6 1 0 1 0 1 1 1 0 0 4 0 0 1 1 0 3 0 0 2 0 0 22 0 2227.2212 Q15149 Q15149 3519 3540 PLEC Plectin yes yes 2;3 1.1712E-42 197.14 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 5037800 0 2138200 2899600 1336 1348 1399 5899;5900;5901;5902 4894;4895;4896 4896 3 0 1028400 642970 ATTATMATSGSAR ______________________________ ______________________________ M A T A R K 4 1 0 0 0 0 0 1 0 0 0 0 1 0 0 2 4 0 0 0 0 0 13 0 1224.5768 P38919 P38919 2 14 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 4.7097E-12 182.64 By MS/MS By MS/MS By MS/MS 5 0.577 1 4 1 1 2 3 270520000 18603000 19793000 232120000 1337 775 1400;1401 5903;5904;5905;5906;5907;5908 4897;4898;4899;4900;4901 4899 382 5 14904000 6249500 32413000 ATTLSNAVSSLASTGLSLTK SLEGKKIKDSTAASRATTLSNAVSSLASTG NAVSSLASTGLSLTKVDEREKQAALEEEQA R A T T K V 3 0 1 0 0 0 0 1 0 0 4 1 0 0 0 5 4 0 0 1 0 0 20 0 1921.0368 Q13492 Q13492 299 318 PICALM Phosphatidylinositol-binding clathrin assembly protein yes yes 2 5.7355E-11 119.54 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 13911000 0 6603000 7308300 1338 1252 1402 5909;5910;5911;5912 4902;4903;4904 4903 3 0 2545100 1417500 ATVASDQIEMNR QKGKAALAATLEEYKATVASDQIEMNRLKA EYKATVASDQIEMNRLKAQLENEKQKVAEL K A T N R L 2 1 1 1 0 1 1 0 0 1 0 0 1 0 0 1 1 0 0 1 0 0 12 0 1333.6296 Q69YQ0 Q69YQ0 567 578 SPECC1L Cytospin-A yes yes 2 0.0012205 115.7 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 15528000 0 4854000 10674000 1339 1469 1403 5913;5914;5915 4905;4906 4905 2 0 2185800 2372500 ATVEDEKLQGK VSSKNSLESYAFNMKATVEDEKLQGKINDE FNMKATVEDEKLQGKINDEDKQKILDKCNE K A T G K I 1 0 0 1 0 1 2 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 11 1 1216.6299 P11142 P11142 551 561 HSPA8 Heat shock cognate 71 kDa protein yes yes 3 0.066695 45.077 By MS/MS 3 0 1 1 1118900 0 1118900 0 1340 517 1404 5916 4907 4907 1 0 476990 0 ATVIQAFR LTNFFGTLDSVLRYRATVIQAFRDMNRFTV DSVLRYRATVIQAFRDMNRFTVNETVLSTK R A T F R D 2 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 904.51305 O60287 O60287 1954 1961 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.011205 101.69 By MS/MS 1 0 1 1 0 0 0 0 1341 224 1405 5917 4908 4908 1 0 0 0 ATVLNLHQHLK LSLNQRKEDLLVDLKATVLNLHQHLKQEQE VDLKATVLNLHQHLKQEQEGVERDRLPAVT K A T L K Q 1 0 1 0 0 1 0 0 2 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1272.7303 Q8WXH0 Q8WXH0 4062 4072 SYNE2 Nesprin-2 yes yes 3 0.061964 41.164 By MS/MS 1 0 1 1 3725500 0 0 3725500 1342 1696 1406 5918 4909 4909 1 0 0 802710 ATVLNYLPK TMPYSVIRGEAFTLKATVLNYLPKCIRVSV EAFTLKATVLNYLPKCIRVSVQLEASPAFL K A T P K C 1 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 1 0 1 1 0 0 9 0 1017.5859 CON__ENSEMBL:ENSBTAP00000024146;P01023 P01023 812 820 A2M Alpha-2-macroglobulin no no 2 0.0063322 94.662 By MS/MS By MS/MS By matching 7.71 1.16 1 2 3 1 4 2 1 30886000 19470000 9722200 1693500 + 1343 370;28 1407 5919;5920;5921;5922;5923;5924;5925 4910;4911;4912;4913 4910 4 31166000 5350500 259640 ATVLQTVFEDYVHSSER AQKSHAVGPQEIRERATVLQTVFEDYVHSS VLQTVFEDYVHSSERRVSWAKKALQSFIQA R A T E R R 1 1 0 1 0 1 2 0 1 0 1 0 0 1 0 2 2 0 1 3 0 0 17 0 1979.9589 Q9H8H2 Q9H8H2 690 706 DDX31 Probable ATP-dependent RNA helicase DDX31 yes yes 3 0.0010752 74.428 By matching By MS/MS 3 0.816 1 1 1 1 2 8092700 0 2422600 5670100 1344 1996 1408 5926;5927;5928 4914 4914 1 0 1090900 1084300 ATVLTTER LVGMTPEIIQKLQDKATVLTTERKKRGKTV IQKLQDKATVLTTERKKRGKTVPEELVKPE K A T E R K 1 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 3 0 0 1 0 0 8 0 889.4869 Q9UMS4 Q9UMS4 180 187 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 3.4331E-10 130.04 By MS/MS 4 0 1 1 0 0 0 0 1345 2199 1409 5929 4915 4915 1 0 0 0 ATVMDVKPVDYR VRVKVETYNDESRIKATVMDVKPVDYREYG RIKATVMDVKPVDYREYGRRLVMSIRRSAL K A T Y R E 1 1 0 2 0 0 0 0 0 0 0 1 1 0 1 0 1 0 1 3 0 0 12 1 1392.7071 P27694 P27694 589 600 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.0072828 118.81 By matching By matching By MS/MS 2 0.816 1 1 1 1 1 1 27133000 1154400 1621200 24357000 1346 679 1410 5930;5931;5932 4916 4916 1 1154400 730070 4724100 ATVNTFGYIAK ELLELLKAHKKAIRRATVNTFGYIAKAIGP AIRRATVNTFGYIAKAIGPHDVLATLLNNL R A T A K A 2 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 2 0 1 1 0 0 11 0 1183.6237 O75533 O75533 1076 1086 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.00032723 122.52 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 46550000 0 24289000 22261000 1347 270 1411 5933;5934;5935;5936 4917;4918 4917 2 0 11105000 4946500 ATVQQLEGR ______________________________ ______________________________ M A T G R W 1 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5302 Q01469 Q01469 2 10 FABP5 Fatty acid-binding protein, epidermal yes yes 2 4.6609E-05 143.01 By MS/MS By MS/MS 5.09 3.09 2 1 1 1 1 1 2 2 8 3 155960000 141940000 0 14020000 1348 1133 1412 5937;5938;5939;5940;5941;5942;5943;5944;5945;5946;5947 4919;4920;4921;4922;4923;4924;4925;4926 4924 8 192540000 0 16401000 ATVQQLEGRWR ______________________________ ______________________________ M A T W R L 1 2 0 0 0 2 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 11 1 1342.7106 Q01469 Q01469 2 12 FABP5 Fatty acid-binding protein, epidermal yes yes 2 0.029073 67.897 By MS/MS 9.5 0.5 1 1 2 2158700 2158700 0 0 1349 1133 1413 5948;5949 4927 4927 1 2005300 0 0 ATVTAMIAR HHTKDFTRAAPNPAKATVTAMIARELLYGG APNPAKATVTAMIARELLYGGTSPTAETIL K A T A R E 3 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 9 0 932.51134 O95793 O95793 449 457 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 1.6483E-05 151.56 By MS/MS By MS/MS 4 0 2 1 1 37161000 0 19675000 17485000 1350 341 1414 5950;5951 4928;4929 4928 2 0 6529500 2855900 ATVVVEATEPEPSGSIANPAASTSPSLSHR ______________________________ IANPAASTSPSLSHRFLDSKFYLLVVVGEI M A T H R F 5 1 1 0 0 0 3 1 1 1 1 0 0 0 4 6 3 0 0 3 0 0 30 0 2961.468 P46821 P46821 2 31 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 2.3293E-33 116.94 By MS/MS By MS/MS 1 0 2 1 1 15920000 0 3801000 12119000 1351 834 1415 5952;5953 4930;4931 4930 2 0 1857900 2611200 AVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEPK KDKKHKKHKKHKKEKAVAAAAAAAVTPAAI TTLAQEEPVAAPEPKKETESEAEDNLDDLE K A V P K K 16 0 0 0 0 1 3 0 0 1 1 1 0 0 4 0 4 0 0 3 0 0 34 0 3113.6608 Q8IYB3 Q8IYB3 836 869 SRRM1 Serine/arginine repetitive matrix protein 1 yes yes 3;4 1.9049E-39 112.35 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 11311000 0 6009300 5301700 1352 1591 1416 5954;5955;5956;5957 4932;4933;4934;4935;4936;4937 4934 6 0 2759600 1198100 AVAAASLVPVVESLVYLQTQK TRIIEGLQDLDDDVRAVAAASLVPVVESLV LVPVVESLVYLQTQKVPFIINTLWDALLEL R A V Q K V 4 0 0 0 0 2 1 0 0 0 3 1 0 0 1 2 1 0 1 5 0 0 21 0 2185.2358 O14981 O14981 448 468 BTAF1 TATA-binding protein-associated factor 172 yes yes 3 1.2937E-06 94.057 By MS/MS 1 0 1 1 2470700 0 0 2470700 1353 159 1417 5958 4938 4938 1 0 0 532350 AVAALLTIPEAEK QEFEKQDELKRSAMRAVAALLTIPEAEKSP MRAVAALLTIPEAEKSPLMSEFQSQISSNP R A V E K S 4 0 0 0 0 0 2 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1324.7602 Q86VP6 Q86VP6 1179 1191 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.0065751 96.015 By matching By MS/MS 1.5 0.5 1 1 1 1 8557800 0 3496000 5061800 1354 1554 1418 5959;5960 4939 4939 1 0 1708800 1143900 AVAEFLNR ARDFGYVCETEFPAKAVAEFLNRQHSDPNE ETEFPAKAVAEFLNRQHSDPNEQVTRKNML K A V N R Q 2 1 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 918.49232 P05549 P05549 316 323 TFAP2A Transcription factor AP-2-alpha yes yes 2 0.034358 76.833 By MS/MS 4.5 0.5 1 1 2 6007300 0 0 6007300 1355 435 1419 5961;5962 4940 4940 1 0 0 902190 AVAFFLESIAMHDIIAAEK ALQVLGTEAQSSLLKAVAFFLESIAMHDII FLESIAMHDIIAAEKCFGTGAAGNRTSPQE K A V E K C 5 0 0 1 0 0 2 0 1 3 1 1 1 2 0 1 0 0 0 1 0 0 19 0 2075.0761 P78527 P78527 1293 1311 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.3722E-09 152.16 By MS/MS 1.75 0.829 2 1 1 4 16154000 0 0 16154000 1356 1089 1420 5963;5964;5965;5966 4941;4942 4942 2 0 0 3474000 AVAFQNPQTHVIENLHAAAYR RWEVADLQPQLKIDKAVAFQNPQTHVIENL PQTHVIENLHAAAYRNALANPLYCPDYRIG K A V Y R N 5 1 2 0 0 2 1 0 2 1 1 0 0 1 1 0 1 0 1 2 0 0 21 0 2349.1978 P22695 P22695 163 183 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 4 0.02903 28.412 By MS/MS 5 0 1 1 4783300 0 0 4783300 1357 635 1421 5967 4943 4943 0 0 0 667180 AVAGNISDPGLQK DELSKTISPMVMDAKAVAGNISDPGLQKSF AKAVAGNISDPGLQKSFLDSGYRILGAVAK K A V Q K S 2 0 1 1 0 1 0 2 0 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1268.6725 P18206 P18206 803 815 VCL Vinculin yes yes 2 0.001024 114.4 By MS/MS By matching 3.75 3.63 1 2 1 3 1 18584000 13589000 0 4995300 1358 595 1422 5968;5969;5970;5971 4944;4945 4945 2 17120000 0 1128800 AVAGWEEVLR LLSHDSGSDHLAFVRAVAGWEEVLRWQDRS LAFVRAVAGWEEVLRWQDRSSRENYLEENL R A V L R W 2 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 10 0 1128.5928 Q7L2E3 Q7L2E3 942 951 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 9.5764E-13 174.52 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 1 2 42478000 3367300 7989200 31121000 1359 1522 1423 5972;5973;5974;5975 4946;4947;4948 4946 2 4057100 3597600 6943300 AVAILCNHQR ENIPAKILSYNRANRAVAILCNHQRAPPKT NRANRAVAILCNHQRAPPKTFEKSMMNLQT R A V Q R A 2 1 1 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1180.6135 P11387 P11387 625 634 TOP1 DNA topoisomerase 1 yes yes 2 2.5817E-07 160.91 By matching By MS/MS 2 0 2 1 1 5355900 1578100 0 3777800 1360 523 1424 5976;5977 4949 4949 1 1901400 0 853710 AVALYFIDK YREDWKSKEMKVRQRAVALYFIDKLALRAG MKVRQRAVALYFIDKLALRAGNEKEEGETA R A V D K L 2 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1038.575 P11387;Q969P6 P11387 476 484 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0092714 89.401 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 3 3 125480000 0 41934000 83547000 1361 523 1425 5978;5979;5980;5981;5982;5983 4950;4951;4952;4953 4951 4 0 18555000 16453000 AVANESGLNFISVK LLAGPPGCGKTLLAKAVANESGLNFISVKG KAVANESGLNFISVKGPELLNMYVGESERA K A V V K G 2 0 2 0 0 0 1 1 0 1 1 1 0 1 0 2 0 0 0 2 0 0 14 0 1447.7671 O15381 O15381 634 647 NVL Nuclear valosin-containing protein-like yes yes 2 0.0013866 107.18 By MS/MS By MS/MS 3 0 2 1 1 13079000 0 3119400 9960100 1362 180 1426 5984;5985 4954;4955 4954 2 0 1329800 1931800 AVANYDSVEEGEK AADKVVEEIRRRGGKAVANYDSVEEGEKVV GKAVANYDSVEEGEKVVKTALDAFGRIDVV K A V E K V 2 0 1 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 1 2 0 0 13 0 1409.6311 P51659 P51659 69 81 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 2 0.00046023 121.9 By MS/MS 6 0 1 1 4803600 0 0 4803600 1363 898 1427 5986 4956 4956 1 0 0 718670 AVAPSIIFFDELDALAVER GESERAVRETFRKARAVAPSIIFFDELDAL SIIFFDELDALAVERGSSLGAGNVADRVLA R A V E R G 4 1 0 2 0 0 2 0 0 2 2 0 0 2 1 1 0 0 0 2 0 0 19 0 2075.0939 Q8NB90 Q8NB90 718 736 SPATA5 Spermatogenesis-associated protein 5 yes yes 2;3 2.4332E-05 99.705 By MS/MS 1.67 0.471 1 2 3 25298000 0 0 25298000 1364 1624 1428 5987;5988;5989 4957;4958 4957 2 0 0 5712700 AVASDFYLR ______________________________ ______________________________ M A V L R Y 2 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0 0 9 0 1040.5291 Q96A72 Q96A72 2 10 MAGOHB Protein mago nashi homolog 2 yes yes 2 9.1981E-06 151.29 By matching By MS/MS By MS/MS 6.73 2.7 1 1 1 1 2 2 1 2 5 3 3 119620000 36162000 40526000 42935000 1365 1748 1429 5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000 4959;4960;4961;4962;4963 4960 5 49943000 24254000 22134000 AVATWHANTER EYHRSVAGKIQKLSKAVATWHANTEREQKK KLSKAVATWHANTEREQKKETERIEKERMR K A V E R E 3 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 0 11 0 1254.6105 P51531 P51531 479 489 SMARCA2 Probable global transcription activator SNF2L2 yes yes 2;3 0.00086737 115.71 By MS/MS 1 0 2 2 6875200 0 0 6875200 1366 893 1430 6001;6002 4964;4965 4964 2 0 0 1481400 AVAVAMAGALIGSEPGPAEELAK ______________________________ ALIGSEPGPAEELAKLEYLSLVSKVCTELD M A V A K L 7 0 0 0 0 0 3 3 0 1 2 1 1 0 2 1 0 0 0 2 0 0 23 0 2151.1246 Q14562 Q14562 2 24 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 1.4421E-20 150.22 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 13989000 0 495990 13493000 1367 1304 1431 6003;6004;6005;6006;6007 4966;4967;4968;4969 4968 4 0 223350 2960200 AVAVDSTGTYMATSGLDHQLK KEPLAKILCHRGGVRAVAVDSTGTYMATSG TGTYMATSGLDHQLKIFDLRGTYQPLSTRT R A V L K I 3 0 0 2 0 1 0 2 1 0 2 1 1 0 0 2 3 0 1 2 0 0 21 0 2164.047 O15213 O15213 364 384 WDR46 WD repeat-containing protein 46 yes yes 3 2.4586E-12 120.4 By MS/MS 3.5 0.5 1 1 2 32968000 0 32968000 0 1368 173 1432 6008;6009 4970 4970 1 0 13600000 0 AVCMLSNTTAIAEAWAR PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW CMLSNTTAIAEAWARLDHKFDLMYAKRAFV R A V A R L 5 1 1 0 1 0 1 0 0 1 1 0 1 0 0 1 2 1 0 1 0 0 17 0 1863.8971 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 374 390 TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 2;3 2.9039E-61 235.49 By MS/MS By MS/MS By MS/MS 5.31 1.86 4 7 6 2 2 3 2 1 9 16 372380000 4409700 94956000 273020000 1369 1077;1515;1078 1433;1434 6010;6011;6012;6013;6014;6015;6016;6017;6018;6019;6020;6021;6022;6023;6024;6025;6026;6027;6028;6029;6030;6031;6032;6033;6034;6035 4971;4972;4973;4974;4975;4976;4977;4978;4979;4980;4981;4982;4983;4984;4985;4986;4987;4988;4989;4990;4991;4992;4993;4994;4995;4996;4997;4998;4999 4986 520 28 3440300 27619000 43085000 AVCMLSNTTAVAEAWAR PPTVVPGGDLAKVQRAVCMLSNTTAVAEAW CMLSNTTAVAEAWARLDHKFDLMYAKRAFV R A V A R L 5 1 1 0 1 0 1 0 0 0 1 0 1 0 0 1 2 1 0 2 0 0 17 0 1849.8815 Q9BQE3 Q9BQE3 374 390 TUBA1C Tubulin alpha-1C chain yes yes 2;3 1.2303E-75 241.92 By MS/MS By MS/MS 4.6 1.2 2 3 3 1 1 2 8 62811000 0 10973000 51838000 1370 1883 1435 6036;6037;6038;6039;6040;6041;6042;6043;6044;6045 5000;5001;5002;5003;5004;5005;5006;5007 5005 7 0 3164400 8086400 AVDEAVILLQEIGVLDQR AVEFLSKAVDSPNIKAVDEAVILLQEIGVL EAVILLQEIGVLDQREYLTTLGQRLAHIST K A V Q R E 2 1 0 2 0 2 2 1 0 2 3 0 0 0 0 0 0 0 0 3 0 0 18 0 1980.0892 Q7L2E3 Q7L2E3 847 864 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2;3 8.2212E-206 311.71 By MS/MS 2 0.707 1 2 1 4 62725000 0 0 62725000 1371 1522 1436 6046;6047;6048;6049 5008;5009;5010 5010 3 0 0 14126000 AVDFAER FRAHVKHRKGAARLRAVDFAERHGYIKGIV RKGAARLRAVDFAERHGYIKGIVKDIIHDP R A V E R H 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 7 0 806.39227 P62917 P62917 31 37 RPL8 60S ribosomal protein L8 yes yes 2 0.018415 105.39 By matching By MS/MS By MS/MS 7.86 1.64 2 2 1 2 2 3 2 100320000 5895700 56467000 37954000 1372 1052 1437 6050;6051;6052;6053;6054;6055;6056 5011;5012;5013 5011 3 4863300 24640000 19210000 AVDGIEVYSTK RNPSLLLGKRSLPGRAVDGIEVYSTKVNCK LPGRAVDGIEVYSTKVNCKVTSRFAHNVVT R A V T K V 1 0 0 1 0 0 1 1 0 1 0 1 0 0 0 1 1 0 1 2 0 0 11 0 1180.5976 CON__Q0V8M9 CON__Q0V8M9 39 49 yes yes 2 0.0026877 107.21 By MS/MS By MS/MS By MS/MS 8 1.51 1 3 1 2 1 3 3 71467000 6671900 13025000 51770000 + 1373 75 1438 6057;6058;6059;6060;6061;6062;6063 5014;5015;5016;5017 5014 4 14379000 17642000 17531000 AVDIPHMDIEALK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL AKAVDIPHMDIEALKKLNKNKKLVKKLAKK K A V L K K 2 0 0 2 0 0 1 0 1 2 1 1 1 0 1 0 0 0 0 1 0 0 13 0 1450.749 P62906 P62906 79 91 RPL10A 60S ribosomal protein L10a yes yes 2;3 0.0031841 105.46 By matching By MS/MS By MS/MS 6.64 0.643 1 2 8 1 3 7 337740000 957580 29808000 306980000 1374 1049 1439;1440 6064;6065;6066;6067;6068;6069;6070;6071;6072;6073;6074 5018;5019;5020;5021;5022;5023;5024 5023 504 7 2063800 17116000 53840000 AVDIPHMDIEALKK SVCVLGDQQHCDEAKAVDIPHMDIEALKKL KAVDIPHMDIEALKKLNKNKKLVKKLAKKY K A V K K L 2 0 0 2 0 0 1 0 1 2 1 2 1 0 1 0 0 0 0 1 0 0 14 1 1578.844 P62906 P62906 79 92 RPL10A 60S ribosomal protein L10a yes yes 2;3 0.005633 95.618 By matching By MS/MS By MS/MS 6.67 0.471 2 4 1 2 3 213110000 1727500 41666000 169720000 1375 1049 1441;1442 6075;6076;6077;6078;6079;6080 5025;5026;5027;5028 5027 504 4 2300200 23925000 29853000 AVDLMTHNYYELLYAFHIYR NLHNEVVGIIESRARAVDLMTHNYYELLYA THNYYELLYAFHIYRHNYRKAGTVMFEYGM R A V Y R H 2 1 1 1 0 0 1 0 2 1 3 0 1 1 0 0 1 0 4 1 0 0 20 0 2531.2308 Q12769 Q12769 1072 1091 NUP160 Nuclear pore complex protein Nup160 yes yes 4 0.0010212 62.203 By MS/MS 2.5 0.5 1 1 2 2227900 0 0 2227900 1376 1196 1443 6081;6082 5029 5029 1 0 0 461170 AVDPEDDFQR IGGSEAPAPQNKDQKAVDPEDDFQREMSFY NKDQKAVDPEDDFQREMSFYRQAQAAVLAV K A V Q R E 1 1 0 3 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 10 0 1190.5204 Q99848 Q99848 95 104 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2 0.00022398 122.19 By matching By MS/MS 4.33 0.471 2 1 1 2 133620000 6394400 0 127220000 1377 1866 1444 6083;6084;6085 5030 5030 1 4988700 0 18166000 AVDPSSVALVTLGSSK HLSAKITIAAYLPLKAVDPSSVALVTLGSS VDPSSVALVTLGSSKEMLFEGGPRPWILEP K A V S K E 2 0 0 1 0 0 0 1 0 0 2 1 0 0 1 4 1 0 0 3 0 0 16 0 1529.8301 Q8TEM1 Q8TEM1 645 660 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 5.0799E-05 112.44 By MS/MS 1 0 1 1 4201200 0 0 4201200 1378 1666 1445 6086 5031 5031 1 0 0 905220 AVDQSVLLMRPEAELSAATVYNLLPVK HLRVTASPQSLCALRAVDQSVLLMRPEAEL AELSAATVYNLLPVKDLSSFPSSVNQQEED R A V V K D 4 1 1 1 0 1 2 0 0 0 5 1 1 0 2 2 1 0 1 4 0 0 27 1 2926.5838 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 599 625 yes yes 3 1.6132E-06 63.297 By MS/MS 2 0.816 1 1 1 3 13141000 0 0 13141000 + 1379 28 1446 6087;6088;6089 5032 5032 1 0 0 2676400 AVDSAMELLFLDTFK ______________________________ AVDSAMELLFLDTFKHPSAEQSSHIDVVRF M A V F K H 2 0 0 2 0 0 1 0 0 0 3 1 1 2 0 1 1 0 0 1 0 0 15 0 1698.8539 Q69YN4 Q69YN4 2 16 KIAA1429 Protein virilizer homolog yes yes 2 0.00014391 121.02 By MS/MS 1.5 0.5 1 1 2 2604800 0 0 2604800 1380 1468 1447 6090;6091 5033 5033 1 0 0 567470 AVDSLVPIGR IPRISVREPMQTGIKAVDSLVPIGRGQREL QTGIKAVDSLVPIGRGQRELIIGDRQTGKT K A V G R G 1 1 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1025.5869 P25705 P25705 195 204 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.0029595 103.83 By MS/MS By MS/MS 4 0 2 1 1 56587000 0 23257000 33330000 1381 661 1448 6092;6093 5034;5035 5034 2 0 7718300 5443800 AVDSQILPK KEKYEITEQRKIDQKAVDSQILPKIKAIPQ RKIDQKAVDSQILPKIKAIPQLQGYLRSVF K A V P K I 1 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 969.5495 Q02878 Q02878 252 260 RPL6 60S ribosomal protein L6 yes yes 2 0.015867 93.162 By MS/MS 5.5 0.5 1 1 2 113620000 0 113620000 0 1382 1149 1449 6094;6095 5036;5037 5036 2 0 39332000 0 AVDVFFPPEAQNDFPVAMQISEK EVGTPPTGNQPFPKKAVDVFFPPEAQNDFP EAQNDFPVAMQISEKHDVVFLITKYGYIHL K A V E K H 3 0 1 2 0 2 2 0 0 1 0 1 1 3 3 1 0 0 0 3 0 0 23 0 2578.2414 Q00610 Q00610 247 269 CLTC Clathrin heavy chain 1 yes yes 3 0.0019126 50.827 By MS/MS 1 0 1 1 8191200 0 0 8191200 1383 1125 1450 6096 5038 5038 1 0 0 1764900 AVEFLASNESR IPPQSRRRMKRVWDRAVEFLASNESRIQTE VWDRAVEFLASNESRIQTESHRVAGEDMLV R A V S R I 2 1 1 0 0 0 2 0 0 0 1 0 0 1 0 2 0 0 0 1 0 0 11 0 1221.599 Q8NC56 Q8NC56 464 474 LEMD2 LEM domain-containing protein 2 yes yes 2 1.2206E-13 180.44 By MS/MS By MS/MS 4 0 2 1 1 59106000 0 10099000 49007000 1384 1631 1451 6097;6098 5039;5040 5040 2 0 3351600 8004400 AVEHLDDLPGALSELSDLHAHK QVKGHGAKVAAALTKAVEHLDDLPGALSEL LPGALSELSDLHAHKLRVDPVNFKLLSHSL K A V H K L 3 0 0 3 0 0 2 1 3 0 5 1 0 0 1 2 0 0 0 1 0 0 22 0 2366.1866 CON__P01966 CON__P01966 70 91 yes yes 2;3;4;5 2.8238E-53 215.48 By MS/MS By MS/MS 6.97 2.28 1 1 1 1 3 3 4 5 9 1 10 19 1848700000 413120000 0 1435600000 + 1385 34 1452 6099;6100;6101;6102;6103;6104;6105;6106;6107;6108;6109;6110;6111;6112;6113;6114;6115;6116;6117;6118;6119;6120;6121;6122;6123;6124;6125;6126;6127 5041;5042;5043;5044;5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060;5061;5062;5063;5064;5065;5066;5067;5068;5069 5067 28 250090000 0 385660000 AVENIQINEEDNEISMLQEK FGALYWKKRQPSLTRAVENIQINEEDNEIS QINEEDNEISMLQEKEREFQEV________ R A V E K E 1 0 3 1 0 2 5 0 0 3 1 1 1 0 0 1 0 0 0 1 0 0 20 0 2345.1057 P21583 P21583 247 266 KITLG Kit ligand;Soluble KIT ligand yes yes 3 0.0060726 52.612 By MS/MS By matching 3 0 2 1 1 23898000 13181000 0 10717000 1386 624 1453 6128;6129 5070 5070 276 1 15208000 0 2078600 AVENSSTAIGIR FSPDGRVFQVEYAMKAVENSSTAIGIRCKD AMKAVENSSTAIGIRCKDGVVFGVEKLVLS K A V I R C 2 1 1 0 0 0 1 1 0 2 0 0 0 0 0 2 1 0 0 1 0 0 12 0 1216.6412 P25788 P25788 30 41 PSMA3 Proteasome subunit alpha type-3 yes yes 2 0.00011224 138.98 By MS/MS By MS/MS 7 0 2 1 1 8129300 3082100 5047200 0 1387 663 1454 6130;6131 5071;5072 5072 2 6642500 2898200 0 AVEPAQQYDMFNIYIK GLARHAMAVYERATRAVEPAQQYDMFNIYI VEPAQQYDMFNIYIKRAAEIYGVTHTRGIY R A V I K R 2 0 1 1 0 2 1 0 0 2 0 1 1 1 1 0 0 0 2 1 0 0 16 0 1928.9342 Q9HCS7 Q9HCS7 622 637 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.015237 67.08 By MS/MS 2.5 0.5 1 1 2 18870000 0 0 18870000 1388 2014 1455 6132;6133 5073 5073 1 0 0 4005600 AVFLLQNNLVELYSLNPSLPTPQPVR IKSFDLIHSPHGELKAVFLLQNNLVELYSL LYSLNPSLPTPQPVRTSRITIGGHRSDVRT K A V V R T 1 1 3 0 0 2 1 0 0 0 6 0 0 1 4 2 1 0 1 3 0 0 26 0 2921.6015 Q9UNX4 Q9UNX4 380 405 WDR3 WD repeat-containing protein 3 yes yes 3 0.00015496 55.247 By MS/MS 1.5 0.5 1 1 2 2493900 0 0 2493900 1389 2212 1456 6134;6135 5074 5074 1 0 0 543650 AVFPSIVGR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV GDDAPRAVFPSIVGRPRHQGVMVGMGQKDS R A V G R P 1 1 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 2 0 0 9 0 944.54435 P60709;A5A3E0;P63261;P0CG38;P68032;P63267;P68133;P62736;Q6S8J3 P60709 29 37 ACTB;POTEF;ACTG1;POTEI;ACTC1;ACTG2;ACTA1;ACTA2;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E no no 2 7.7286E-05 145.04 By MS/MS By MS/MS By MS/MS 5.62 3.2 2 1 1 1 2 1 1 2 2 2 8 3 1635600000 12811000 639800000 982970000 1390 966;1069;1075;1501;499 1457 6136;6137;6138;6139;6140;6141;6142;6143;6144;6145;6146;6147;6148 5075;5076;5077;5078;5079;5080;5081;5082;5083;5084;5085;5086 5083 12 9830600 176250000 158250000 AVFPSIVGRPR SGMCKAGFAGDDAPRAVFPSIVGRPRHQGV DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV R A V P R H 1 2 0 0 0 0 0 1 0 1 0 0 0 1 2 1 0 0 0 2 0 0 11 1 1197.6982 P60709;A5A3E0;P63261;P0CG38;P68032;P63267;P68133;P62736;Q6S8J3 P60709 29 39 ACTB;POTEF;ACTG1;POTEI;ACTC1;ACTG2;ACTA1;ACTA2;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E no no 2;3 9.9169E-46 220.51 By MS/MS By MS/MS By MS/MS 5.39 2.8 4 3 4 4 5 5 3 3 3 4 3 17 18 4014800000 21443000 2125900000 1867500000 1391 966;1069;1075;1501;499 1458 6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159;6160;6161;6162;6163;6164;6165;6166;6167;6168;6169;6170;6171;6172;6173;6174;6175;6176;6177;6178;6179;6180;6181;6182;6183;6184;6185;6186 5087;5088;5089;5090;5091;5092;5093;5094;5095;5096;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117;5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145;5146 5135 60 25507000 636180000 295130000 AVFQESIR SQMVEMEEQVVEDHRAVFQESIRWLEDEKA QVVEDHRAVFQESIRWLEDEKALLEMTEEV R A V I R W 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 8 0 948.50288 O00139 O00139 630 637 KIF2A Kinesin-like protein KIF2A yes yes 2 0.0013404 117.16 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 36466000 0 14999000 21467000 1392 104 1459 6187;6188;6189;6190 5147;5148;5149 5148 3 0 6772000 4163600 AVFVDLEPTVIDEIR TTFFCETGAGKHVPRAVFVDLEPTVIDEIR AVFVDLEPTVIDEIRNGPYRQLFHPEQLIT R A V I R N 1 1 0 2 0 0 2 0 0 2 1 0 0 1 1 0 1 0 0 3 0 0 15 0 1714.9142 P68366 P68366 65 79 TUBA4A Tubulin alpha-4A chain yes yes 2 0.00028373 129.34 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 19962000 0 13206000 6755800 1393 1078 1460 6191;6192;6193 5150;5151;5152 5151 3 0 3755700 1103400 AVFVDLEPTVIDEVR NTFFSETGAGKHVPRAVFVDLEPTVIDEVR AVFVDLEPTVIDEVRTGTYRQLFHPEQLIT R A V V R T 1 1 0 2 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 4 0 0 15 0 1700.8985 P68363;Q71U36;Q9BQE3 P68363 65 79 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2;3 3.0858E-25 202.16 By matching By MS/MS By MS/MS 5.24 2.76 3 3 2 2 2 4 3 2 3 1 1 7 17 2197900000 1008000 96783000 2100100000 1394 1077;1515;1883 1461 6194;6195;6196;6197;6198;6199;6200;6201;6202;6203;6204;6205;6206;6207;6208;6209;6210;6211;6212;6213;6214;6215;6216;6217;6218 5153;5154;5155;5156;5157;5158;5159;5160;5161;5162;5163;5164;5165;5166;5167;5168;5169;5170;5171;5172;5173;5174 5161 22 807500 70064000 354170000 AVFWDIK DARMRLMKHDVNLGRAVFWDIKNRLPRSVT KHDVNLGRAVFWDIKNRLPRSVTTVQWENS R A V I K N 1 0 0 1 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 7 0 877.46979 Q6P2Q9 Q6P2Q9 1152 1158 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.027946 94.401 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 34711000 474940 11671000 22566000 1395 1490 1462 6219;6220;6221;6222 5175;5176 5175 2 474940 5704400 4877800 AVGHPFVIQLGR KQLGSILKTNVRACKAVGHPFVIQLGRIYL ACKAVGHPFVIQLGRIYLDMLNVYKCLSEN K A V G R I 1 1 0 0 0 1 0 2 1 1 1 0 0 1 1 0 0 0 0 2 0 0 12 0 1292.7353 O14980 O14980 701 712 XPO1 Exportin-1 yes yes 3 0.00083156 104.22 By MS/MS 2 0 1 1 5331400 0 0 5331400 1396 158 1463 6223 5177 5177 1 0 0 1204800 AVGPSSTQLYMVR EKDPKSGFDIKVPRRAVGPSSTQLYMVRTM RRAVGPSSTQLYMVRTMLESLIADKSGSKK R A V V R T 1 1 0 0 0 1 0 1 0 0 1 0 1 0 1 2 1 0 1 2 0 0 13 0 1407.718 Q7L576 Q7L576 551 563 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 2 0.00037328 126.31 By MS/MS By MS/MS 2 0 2 1 1 8645100 0 4238500 4406600 1397 1524 1464 6224;6225 5178;5179 5179 2 0 1908700 995800 AVGPTAEADK DYEETELISTTANYRAVGPTAEADKSAAEK TANYRAVGPTAEADKSAAEKRRQLIQESKF R A V D K S 3 0 0 1 0 0 1 1 0 0 0 1 0 0 1 0 1 0 0 1 0 0 10 0 957.47673 Q13123 Q13123 128 137 IK Protein Red yes yes 2 0.040131 75.378 By MS/MS 3 0 1 1 3967200 0 3967200 0 1398 1222 1465 6226 5180 5180 1 0 1691200 0 AVGPTAEADKSAAEK DYEETELISTTANYRAVGPTAEADKSAAEK AVGPTAEADKSAAEKRRQLIQESKFLGGDM R A V E K R 5 0 0 1 0 0 2 1 0 0 0 2 0 0 1 1 1 0 0 1 0 0 15 1 1443.7205 Q13123 Q13123 128 142 IK Protein Red yes yes 3 0.070431 37.182 By MS/MS 2.5 0.5 1 1 2 4032700 0 4032700 0 1399 1222 1466 6227;6228 5181 5181 1 0 1748600 0 AVGTPGGGGGGAVPGISAMSR RGDKEAPPPVLLTPKAVGTPGGGGGGAVPG GGGGGAVPGISAMSRGDLSQRAKDLSKRSF K A V S R G 3 1 0 0 0 0 0 8 0 1 0 0 1 0 2 2 1 0 0 2 0 0 21 0 1754.8734 P48634 P48634 1350 1370 PRRC2A Protein PRRC2A yes yes 2 1.0189E-13 130.27 By MS/MS By matching 1.67 0.471 1 2 2 1 12336000 0 9041700 3294500 1400 844 1467 6229;6230;6231 5182;5183 5183 2 0 4195600 744500 AVHEQLAALSQAPVNKPK EERATRLAELQEQLKAVHEQLAALSQAPVN EQLAALSQAPVNKPKKKKEKKEKEKKKKDK K A V P K K 4 0 1 0 0 2 1 0 1 0 2 2 0 0 2 1 0 0 0 2 0 0 18 1 1900.053 Q15059 Q15059 472 489 BRD3 Bromodomain-containing protein 3 yes yes 3;4 0.00035973 79.393 By MS/MS 2.17 1.07 2 2 1 1 6 111090000 0 0 111090000 1401 1342 1468 6232;6233;6234;6235;6236;6237 5184;5185;5186 5186 3 0 0 24102000 AVHEQLAALSQGPISKPK EERAHRLAELQEQLRAVHEQLAALSQGPIS EQLAALSQGPISKPKRKREKKEKKKKRKAE R A V P K R 3 0 0 0 0 2 1 1 1 1 2 2 0 0 2 2 0 0 0 1 0 0 18 1 1873.0421 P25440 P25440 529 546 BRD2 Bromodomain-containing protein 2 yes yes 2;3;4 1.2987E-07 147.1 By MS/MS By MS/MS 2.22 0.629 1 5 3 3 6 123640000 0 14817000 108820000 1402 658 1469 6238;6239;6240;6241;6242;6243;6244;6245;6246 5187;5188;5189;5190;5191;5192;5193;5194 5193 8 0 6596400 23937000 AVHGVEETSSEVKPPNE GCGTAAFPYPMMHGRAVHGVEETSSEVKPP HGVEETSSEVKPPNE_______________ R A V N E - 1 0 1 0 0 0 4 1 1 0 0 1 0 0 2 2 1 0 0 3 0 0 17 1 1807.8588 Q7Z6I8 Q7Z6I8 172 188 C5orf24 UPF0461 protein C5orf24 yes yes 2;3 1.1381E-08 172.11 By matching By MS/MS 6.5 0.5 2 2 1 3 27132000 1877600 0 25255000 1403 1534 1470 6247;6248;6249;6250 5195;5196 5196 2 2500100 0 4408300 AVHNSVAAQLTGVAGH NLCGKRGHAFAQCPKAVHNSVAAQLTGVAG VHNSVAAQLTGVAGH_______________ K A V G H - 4 0 1 0 0 1 0 2 2 0 1 0 0 0 0 1 1 0 0 3 0 0 16 0 1530.7903 Q9NUD5 Q9NUD5 388 403 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 2;3 3.9437E-06 160.22 By MS/MS 4.5 0.5 1 1 2 26491000 0 0 26491000 1404 2057 1471 6251;6252 5197;5198 5198 1 0 0 3858100 AVHTVDFTADK ISGRAPLRQFEGHTKAVHTVDFTADKYHVV GHTKAVHTVDFTADKYHVVSGADDYTVKLW K A V D K Y 2 0 0 2 0 0 0 0 1 0 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1202.5932 Q8TED0 Q8TED0 124 134 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 3 0.0072289 76.332 By MS/MS 2.5 1.12 1 1 1 1 4 28014000 0 0 28014000 1405 1665 1472 6253;6254;6255;6256 5199 5199 1 0 0 5341000 AVHTVDFTADKYHVVSGADDYTVK ISGRAPLRQFEGHTKAVHTVDFTADKYHVV DKYHVVSGADDYTVKLWDIPNSKEILTFKE K A V V K L 3 0 0 4 0 0 0 1 2 0 0 2 0 1 0 1 3 0 2 5 0 0 24 1 2637.2711 Q8TED0 Q8TED0 124 147 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 4 0.05443 22.271 By MS/MS 4 0 1 1 9918700 0 0 9918700 1406 1665 1473 6257 5200 5200 1 0 0 1620000 AVIDLNNR GNVYVKFRREEDAEKAVIDLNNRWFNGQPI REEDAEKAVIDLNNRWFNGQPIHAELSPVT K A V N R W 1 1 2 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 913.49813 P0DN76;Q01081 P0DN76 126 133 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 0.00029776 132.09 By MS/MS By MS/MS 6 0 2 1 1 129710000 19590000 0 110120000 1407 502 1474 6258;6259 5201;5202 5201 2 26085000 0 16475000 AVIMFGVPYVYTQSR GKVSEGIDFVHHYGRAVIMFGVPYVYTQSR AVIMFGVPYVYTQSRILKARLEYLRDQFQI R A V S R I 1 1 0 0 0 1 0 1 0 1 0 0 1 1 1 1 1 0 2 3 0 0 15 0 1729.8862 P18074 P18074 617 631 ERCC2 TFIIH basal transcription factor complex helicase XPD subunit yes yes 2 0.00066655 101.95 By MS/MS 3 0 1 1 1984100 0 1984100 0 1408 592 1475 6260 5203 5203 1 0 845810 0 AVITSLLDQIPEMFADTR VPLLDGFLVNVNESRAVITSLLDQIPEMFA TSLLDQIPEMFADTRETETVFVPVIQAGME R A V T R E 2 1 0 2 0 1 1 0 0 2 2 0 1 1 1 1 2 0 0 1 0 0 18 0 2019.0347 P53992 P53992 596 613 SEC24C Protein transport protein Sec24C yes yes 3 0.0002015 88.992 By MS/MS 2 0 1 1 1176400 0 0 1176400 1409 925 1476 6261 5204 5204 1 0 0 265850 AVIYNPATQADWTAK RTGLEDPERYLFVDRAVIYNPATQADWTAK AVIYNPATQADWTAKKLVWIPSERHGFEAA R A V A K K 4 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 1 1 0 0 15 0 1647.8257 P35580 P35580 19 33 MYH10 Myosin-10 yes yes 2 0.00039821 137.01 By MS/MS By matching 1.5 0.5 1 1 1 1 53089000 0 48865000 4223900 1410 753 1477 6262;6263 5205 5205 1 0 23884000 954530 AVKEEGQDPDEIGIELEATSK DTGGNKSVLMERLKKAVKEEGQDPDEIGIE QDPDEIGIELEATSKKSAKRCVKGLKMEEE K A V S K K 2 0 0 2 0 1 5 2 0 2 1 2 0 0 1 1 1 0 0 1 0 0 21 1 2257.0962 Q14151 Q14151 63 83 SAFB2 Scaffold attachment factor B2 yes yes 3 0.048862 40.402 By MS/MS 2 0 1 1 5645400 0 0 5645400 1411 1285 1478 6264 5206 5206 0 0 0 1275800 AVLALGGSLAGSAAEASHLVTDR PKVLFTGVVDARGERAVLALGGSLAGSAAE LAGSAAEASHLVTDRIRRTVKFLCALGRGI R A V D R I 6 1 0 1 0 0 1 3 1 0 4 0 0 0 0 3 1 0 0 2 0 0 23 0 2165.144 Q14676 Q14676 1908 1930 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 2.4032E-11 102.6 By MS/MS 1 0 1 1 20960000 0 0 20960000 1412 1310 1479 6265 5207 5207 1 0 0 4516200 AVLDALLASK YVISGQDQRKEEGMRAVLDALLASKQHWDR EEGMRAVLDALLASKQHWDRDLQVTLIPTF R A V S K Q 3 0 0 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 999.59645 Q66K74 Q66K74 991 1000 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 2 0.040131 75.378 By MS/MS 6 0.816 1 1 1 3 10766000 0 0 10766000 1413 1465 1480 6266;6267;6268 5208 5208 1 0 0 1753900 AVLDVFEEGTEASAATAVK ITGARNLAVSQVVHKAVLDVFEEGTEASAA VFEEGTEASAATAVKITLLSALVETRTIVR K A V V K I 5 0 0 1 0 0 3 1 0 0 1 1 0 1 0 1 2 0 0 3 0 0 19 0 1906.9524 P01011 P01011 361 379 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 6.774E-23 187.97 By MS/MS By matching 7.33 3.09 1 1 1 2 1 11593000 11308000 285850 0 1414 368 1481 6269;6270;6271 5209;5210 5210 2 9459900 1446200 0 AVLEKTDEPGKYTADGGK AKVTMLISGRCQEVKAVLEKTDEPGKYTAD EKTDEPGKYTADGGKHVAYIIRSHVKDHYI K A V G K H 2 0 0 2 0 0 2 3 0 0 1 3 0 0 1 0 2 0 1 1 0 0 18 2 1877.9371 P31025 P31025 84 101 LCN1 Lipocalin-1 yes yes 3 1.3332E-12 167.82 By MS/MS 6.29 3.01 1 1 1 1 1 1 1 7 36407000 36407000 0 0 1415 716 1482 6272;6273;6274;6275;6276;6277;6278 5211;5212;5213;5214;5215;5216 5214 6 44301000 0 0 AVLETIR FNIIMRRKPKENNFKAVLETIRNLMNTDCV KPKENNFKAVLETIRNLMNTDCVVPDWLHD K A V I R N 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 7 0 800.4756 O60306;Q5JTH9 O60306 668 674 AQR;RRP12 Intron-binding protein aquarius;RRP12-like protein no no 2 0.039993 83.377 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 8810200 4051400 2402400 2356400 1416 225;1438 1483 6279;6280;6281 5217 5217 1 4051400 1174200 532500 AVLIAGQPGTGK GVVLEMIREGKIAGRAVLIAGQPGTGKTAI AGRAVLIAGQPGTGKTAIAMGMAQALGPDT R A V G K T 2 0 0 0 0 1 0 3 0 1 1 1 0 0 1 0 1 0 0 1 0 0 12 0 1110.6397 Q9Y230 Q9Y230 72 83 RUVBL2 RuvB-like 2 yes yes 2 0.025671 80.986 By MS/MS 4 0.816 1 1 1 3 23111000 0 0 23111000 1417 2228 1484 6282;6283;6284 5218;5219 5218 1 0 0 3633200 AVLLAGPPGTGK GVIVELIKSKKMAGRAVLLAGPPGTGKTAL AGRAVLLAGPPGTGKTALALAIAQELGSKV R A V G K T 2 0 0 0 0 0 0 3 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1079.6339 Q9Y265 Q9Y265 65 76 RUVBL1 RuvB-like 1 yes yes 2 0.02132 83.869 By matching By MS/MS By MS/MS 4.4 0.49 3 2 1 2 2 63751000 3053200 12517000 48181000 1418 2234 1485 6285;6286;6287;6288;6289 5220;5221;5222;5223 5222 3 2382000 3813200 7718600 AVLMEKPDVVVGTPSR RVANVSAAEDSVSQRAVLMEKPDVVVGTPS VLMEKPDVVVGTPSRILSHLQQDSLKLRDS R A V S R I 1 1 0 1 0 0 1 1 0 0 1 1 1 0 2 1 1 0 0 4 0 0 16 1 1696.9182 Q9NY93 Q9NY93 129 144 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2;3 8.0172E-06 156.14 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 36999000 0 26256000 10743000 1419 2095 1486 6290;6291;6292 5224;5225;5226 5224 3 0 8713400 2083700 AVLMENIVYLTNSLELEHIEVK MGPRILDLQLEFDEKAVLMENIVYLTNSLE VYLTNSLELEHIEVKFASEAEDKIREDCCP K A V V K F 1 0 2 0 0 0 4 0 1 2 4 1 1 0 0 1 1 0 1 3 0 0 22 0 2556.3509 Q9P2J5 Q9P2J5 1018 1039 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 0.032098 32.025 By MS/MS 2 0 1 1 1177800 0 0 1177800 1420 2124 1487 6293 5227 5227 1 0 0 266150 AVLQALEVLPVAPPPEPR LILKQAAKPPISKKKAVLQALEVLPVAPPP QALEVLPVAPPPEPRSLTAEEVKRLEEQEE K A V P R S 3 1 0 0 0 1 2 0 0 0 3 0 0 0 5 0 0 0 0 3 0 0 18 0 1895.088 Q6PL18 Q6PL18 951 968 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2;3 3.7899E-12 168.61 By MS/MS By MS/MS 1.75 0.661 3 4 1 3 5 26311000 0 5735700 20575000 1421 1498 1488 6294;6295;6296;6297;6298;6299;6300;6301 5228;5229;5230;5231;5232;5233 5233 6 0 2600900 4510800 AVLQNTAQINQMLSDLNR LRRYTSLNHLAQAARAVLQNTAQINQMLSD QNTAQINQMLSDLNRVDFANVQEQASWVCR R A V N R V 2 1 3 1 0 3 0 0 0 1 3 0 1 0 0 1 1 0 0 1 0 0 18 0 2028.0422 P22670 P22670 763 780 RFX1 MHC class II regulatory factor RFX1 yes yes 3 0.0012626 67.4 By matching By MS/MS 1.5 0.5 1 1 1 1 3632200 0 527650 3104500 1422 633 1489 6302;6303 5234 5234 1 0 257910 701560 AVLSAEQLR LVSLGGKATTASQAKAVLSAEQLRDEEVHA TASQAKAVLSAEQLRDEEVHAGLGELLRSL K A V L R D 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 985.55564 P50454 P50454 95 103 SERPINH1 Serpin H1 yes yes 2 0.0041756 98.523 By MS/MS 4.5 0.5 1 1 2 10763000 0 0 10763000 1423 879 1490 6304;6305 5235 5235 1 0 0 1570400 AVLSAEQLRDEEVHAGLGELLR LVSLGGKATTASQAKAVLSAEQLRDEEVHA LRDEEVHAGLGELLRSLSNSTARNVTWKLG K A V L R S 3 2 0 1 0 1 4 2 1 0 5 0 0 0 0 1 0 0 0 2 0 0 22 1 2404.271 P50454 P50454 95 116 SERPINH1 Serpin H1 yes yes 4 4.41E-10 98.562 By MS/MS 4.5 0.5 1 1 2 22325000 0 0 22325000 1424 879 1491 6306;6307 5236;5237 5237 2 0 0 3295200 AVLVDLEPGTMDSVR NVYYNEATGGKYVPRAVLVDLEPGTMDSVR AVLVDLEPGTMDSVRSGPFGQIFRPDNFVF R A V V R S 1 1 0 2 0 0 1 1 0 0 2 0 1 0 1 1 1 0 0 3 0 0 15 0 1600.8131 P68371;P04350;Q3ZCM7 P68371 63 77 TUBB4B;TUBB4A;TUBB8 Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-8 chain no no 2;3 1.4821E-11 178.81 By MS/MS By MS/MS By MS/MS 5.18 2.46 3 4 4 11 10 5 3 3 3 4 2 21 27 2687100000 31503000 739870000 1915700000 1425 1079;414;1415 1492;1493 6308;6309;6310;6311;6312;6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348;6349;6350;6351;6352;6353;6354;6355;6356;6357 5238;5239;5240;5241;5242;5243;5244;5245;5246;5247;5248;5249;5250;5251;5252;5253;5254;5255;5256;5257;5258;5259;5260;5261;5262;5263;5264;5265;5266;5267;5268;5269;5270;5271;5272;5273;5274;5275;5276;5277;5278;5279;5280;5281;5282;5283;5284;5285;5286 5279 141 49 24578000 362040000 327000000 AVMDDFAAFVEK ELVKHKPKATKEQLKAVMDDFAAFVEKCCK QLKAVMDDFAAFVEKCCKADDKETCFAEEG K A V E K C 3 0 0 2 0 0 1 0 0 0 0 1 1 2 0 0 0 0 0 2 0 0 12 0 1341.6275 CON__P02768-1;P02768 CON__P02768-1 570 581 ALB Serum albumin yes no 2 0.00016621 134.59 By MS/MS 6 2.97 1 1 2 2 1 1 1 1 3 2 15 871070000 871070000 0 0 + 1426 44 1494;1495 6358;6359;6360;6361;6362;6363;6364;6365;6366;6367;6368;6369;6370;6371;6372 5287;5288;5289;5290;5291;5292;5293;5294;5295;5296;5297;5298;5299;5300 5295 17 14 625030000 0 0 AVMISAIEK RIVPGQFLAVDPKGRAVMISAIEKQKLVYI VDPKGRAVMISAIEKQKLVYILNRDAAARL R A V E K Q 2 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 9 0 960.5314 Q15393 Q15393 129 137 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.057219 69.423 By MS/MS 3 1.41 1 1 1 1 1 5 19168000 0 19168000 0 1427 1361 1496 6373;6374;6375;6376;6377 5301 5301 1 0 7737000 0 AVNPFLADVDK AFEALGTALKVVGEKAVNPFLADVDKLKLD VGEKAVNPFLADVDKLKLDKIKECSEKVEL K A V D K L 2 0 1 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1187.6186 Q14008 Q14008 474 484 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.045212 72.275 By MS/MS 1 0 1 1 0 0 0 0 1428 1279 1497 6378 5302 5302 1 0 0 0 AVNPFLADVDKLK AFEALGTALKVVGEKAVNPFLADVDKLKLD EKAVNPFLADVDKLKLDKIKECSEKVELIH K A V L K L 2 0 1 2 0 0 0 0 0 0 2 2 0 1 1 0 0 0 0 2 0 0 13 1 1428.7977 Q14008 Q14008 474 486 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 0.011923 91.752 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 70775000 0 9497000 61278000 1429 1279 1498 6379;6380;6381;6382;6383;6384 5303;5304;5305;5306 5305 4 0 4486400 13345000 AVNSATGVPTV VAVLQAHQAKEAAQKAVNSATGVPTV____ AAQKAVNSATGVPTV_______________ K A V T V - 2 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 2 0 0 3 0 0 11 0 1014.5346 P11940;Q9H361 P11940 626 636 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.007638 95.815 By MS/MS By MS/MS By matching 3 0 3 1 1 1 38822000 33581000 0 5240900 1430 530 1499 6385;6386;6387 5307;5308 5307 2 38745000 0 1016500 AVNVYSTSVTSDNLSR ______________________________ VNVYSTSVTSDNLSRHDMLAWINESLQLNL M A V S R H 1 1 2 1 0 0 0 0 0 0 1 0 0 0 0 4 2 0 1 3 0 0 16 0 1711.8377 Q15691 Q15691 2 17 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2 9.097E-36 208.27 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 39167000 0 13364000 25803000 1431 1379 1500 6388;6389;6390;6391 5309;5310;5311;5312 5309 4 0 5142400 3956200 AVPETRPNHTIYINNLNEK ______________________________ TRPNHTIYINNLNEKIKKDELKKSLYAIFS M A V E K I 1 1 4 0 0 0 2 0 1 2 1 1 0 0 2 0 2 0 1 1 0 0 19 1 2222.1444 P09012 P09012 2 20 SNRPA U1 small nuclear ribonucleoprotein A yes yes 2;3 2.7923E-52 220.97 By MS/MS By MS/MS 6.58 2.29 1 1 1 4 1 1 1 2 6 6 645190000 0 353680000 291510000 1432 481 1501 6392;6393;6394;6395;6396;6397;6398;6399;6400;6401;6402;6403 5313;5314;5315;5316;5317;5318;5319;5320;5321;5322 5319 10 0 154820000 50568000 AVPKEDIYSGGGGGGSR VKFHPIQGHRVEVKKAVPKEDIYSGGGGGG PKEDIYSGGGGGGSRSSRGGRGGRGRGGGR K A V S R S 1 1 0 1 0 0 1 6 0 1 0 1 0 0 1 2 0 0 1 1 0 0 17 1 1605.7747 Q13151 Q13151 173 189 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 0.00022171 93.768 By MS/MS By MS/MS 6.2 0.4 4 1 3 2 77644000 0 56917000 20727000 1433 1225 1502 6404;6405;6406;6407;6408 5323;5324;5325;5326 5324 4 0 22025000 3101000 AVPLAVPLGQTEVFQALQR ______________________________ AVPLGQTEVFQALQRLHMTIFSQSVSPCGK R A V Q R L 3 1 0 0 0 3 1 1 0 0 3 0 0 1 2 0 1 0 0 3 0 0 19 0 2036.1419 Q86W42 Q86W42 4 22 THOC6 THO complex subunit 6 homolog yes yes 2;3 1.463E-17 178.14 By MS/MS By MS/MS By MS/MS 6.33 1.05 1 6 1 1 2 2 5 67463000 740600 12282000 54440000 1434 1555 1503 6409;6410;6411;6412;6413;6414;6415;6416;6417 5327;5328;5329;5330;5331;5332 5332 6 986110 4251500 8276200 AVPNPVINPYQPAPPSGYFMAAIPQTQNR AHLTNQYMQRMASVRAVPNPVINPYQPAPP PSGYFMAAIPQTQNRAAYYPPSQIAQLRPS R A V N R A 4 1 3 0 0 3 0 1 0 2 0 0 1 1 7 1 1 0 2 2 0 0 29 0 3137.5757 P11940 P11940 391 419 PABPC1 Polyadenylate-binding protein 1 yes yes 3 5.6351E-08 67.463 By MS/MS 3.5 0.5 1 1 2 16813000 0 16813000 0 1435 530 1504 6418;6419 5333;5334;5335 5333 3 0 6796900 0 AVPPTYADLGK ______________________________ ______________________________ M A V G K S 2 0 0 1 0 0 0 1 0 0 1 1 0 0 2 0 1 0 1 1 0 0 11 0 1130.5972 P21796 P21796 2 12 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 0.023785 61.65 By MS/MS 6 0 1 1 0 0 0 0 1436 625 1505 6420 5336 5336 1 0 0 0 AVPVWDVLASGYVSGAAR RAATMEVKVGRLRGRAVPVWDVLASGYVSG VWDVLASGYVSGAAREELLAEFGSGTLDLP R A V A R E 4 1 0 1 0 0 0 2 0 0 1 0 0 0 1 2 0 1 1 4 0 0 18 0 1816.9472 P58107 P58107 4670 4687 EPPK1 Epiplakin yes yes 2;3 2.0889E-08 137.95 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 31956000 0 21147000 10808000 1437 958 1506 6421;6422;6423;6424;6425 5337;5338;5339;5340;5341;5342;5343 5338 7 0 10230000 2328800 AVPVWDVLASGYVSR RAATMEVKVGRLRGRAVPVWDVLASGYVSR AVPVWDVLASGYVSRAAREELLAEFGSGTL R A V S R A 2 1 0 1 0 0 0 1 0 0 1 0 0 0 1 2 0 1 1 4 0 0 15 0 1617.8515 P58107 P58107 2533 2547 EPPK1 Epiplakin yes no 2;3 3.5708E-25 201.46 By MS/MS By MS/MS 2.27 1.05 3 4 2 2 5 6 120490000 0 53618000 66875000 1438 958 1507 6426;6427;6428;6429;6430;6431;6432;6433;6434;6435;6436 5344;5345;5346;5347;5348;5349;5350;5351 5346 8 0 25502000 14314000 AVPYPQR VLSLSQSKVLPVPQKAVPYPQRDMPIQAFL KVLPVPQKAVPYPQRDMPIQAFLLYQEPVL K A V Q R D 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 1 0 0 7 0 829.44464 CON__P02666 CON__P02666 177 183 yes yes 2 0.023689 98.03 By MS/MS 10 0 1 1 22880000 22880000 0 0 + 1439 41 1508 6437 5352;5353 5353 2 41683000 0 0 AVQAAVQYPYEVGIK RRQHPGCLAQEACVRAVQAAVQYPYEVGIK AVQAAVQYPYEVGIKKEEELFLYLLQSGQA R A V I K K 3 0 0 0 0 2 1 1 0 1 0 1 0 0 1 0 0 0 2 3 0 0 15 0 1634.8668 Q08426 Q08426 236 250 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.0057948 81.92 By MS/MS 3 0 1 1 3638500 0 0 3638500 1440 1184 1509 6438 5354 5354 1 0 0 705700 AVQAQGGESQQEAQR ADSDQASKVQQQKLKAVQAQGGESQQEAQR AVQAQGGESQQEAQRLQAQLNELQAQLSQK K A V Q R L 3 1 0 0 0 5 2 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 15 0 1585.7445 Q14980 Q14980 1574 1588 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.011812 74.944 By MS/MS 1 0 1 1 568070 0 568070 0 1441 1327 1510 6439 5355 5355 1 0 277660 0 AVQGAQQPSLYQIR SHFKRKFIIHRGKRKAVQGAQQPSLYQIRT KAVQGAQQPSLYQIRTNGSALCTRCIQINT K A V I R T 2 1 0 0 0 4 0 1 0 1 1 0 0 0 1 1 0 0 1 1 0 0 14 0 1557.8263 Q13045 Q13045 1047 1060 FLII Protein flightless-1 homolog yes yes 2 7.7745E-25 200.71 By MS/MS 2 0 1 1 3234800 0 3234800 0 1442 1216 1511 6440 5356 5356 1 0 1456700 0 AVQGFFTSNNATR LPSTSRRLNHYVLYKAVQGFFTSNNATRDF YKAVQGFFTSNNATRDFLLPFLEEPMDTEA K A V T R D 2 1 2 0 0 1 0 1 0 0 0 0 0 2 0 1 2 0 0 1 0 0 13 0 1411.6844 O43242 O43242 116 128 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 1.1868E-25 140.78 By MS/MS 4 0 1 1 0 0 0 0 1443 191 1512 6441 5357 5357 1 0 0 0 AVQGGGATPVVGAVQGPVPGMPPMTQAPR EKRKPKSQETPATKKAVQGGGATPVVGAVQ QGPVPGMPPMTQAPRIMHHMPGQPPYMPPP K A V P R I 4 1 0 0 0 3 0 6 0 0 0 0 2 0 6 0 2 0 0 5 0 0 29 0 2726.3996 P09012 P09012 124 152 SNRPA U1 small nuclear ribonucleoprotein A yes yes 2;3 5.9118E-43 170.38 By MS/MS By MS/MS 6.11 0.314 8 1 6 3 130630000 0 77526000 53103000 1444 481 1513;1514;1515 6442;6443;6444;6445;6446;6447;6448;6449;6450 5358;5359;5360;5361;5362;5363;5364;5365;5366;5367 5366 194;195 10 0 27377000 7944800 AVQLKPRPPQGLVR APELGVFADFGNHTKAVQLKPRPPQGLVRV KAVQLKPRPPQGLVRVVGRPQPQLQYVDAL K A V V R V 1 2 0 0 0 2 0 1 0 0 2 1 0 0 3 0 0 0 0 2 0 0 14 2 1557.9467 Q13724 Q13724 661 674 MOGS Mannosyl-oligosaccharide glucosidase yes yes 3 0.0032249 80.522 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 14210000 0 6054400 8156000 1445 1266 1516 6451;6452 5368;5369 5368 2 0 2726400 1581900 AVQTLQMELQQIMK SIHRIKRTAGDHPGRAVQTLQMELQQIMKG RAVQTLQMELQQIMKGNFSSFMQKEIFEQP R A V M K G 1 0 0 0 0 4 1 0 0 1 2 1 2 0 0 0 1 0 0 1 0 0 14 0 1659.8688 Q06210 Q06210 323 336 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 0.0034651 94.363 By MS/MS 3 0 1 1 2918100 0 2918100 0 1446 1168 1517 6453 5370 5370 1 0 1244000 0 AVQYLSSQDEK ICSEDIECSGLTIPKAVQYLSSQDEKYQAI TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ K A V E K Y 1 0 0 1 0 2 1 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 11 0 1266.6092 Q13835 Q13835 250 260 PKP1 Plakophilin-1 yes yes 2 6.3378E-10 171.56 By MS/MS By matching 5.5 2.87 1 2 1 3 1 25713000 16589000 0 9124300 1447 1270 1518 6454;6455;6456;6457 5371;5372;5373 5373 3 15857000 0 1365100 AVSDASAGDYGSAIETLVTAISLIK IMNRNRAISSSAISRAVSDASAGDYGSAIE GSAIETLVTAISLIKQSKVSADDRCKVLIS R A V I K Q 5 0 0 2 0 0 1 2 0 3 2 1 0 0 0 4 2 0 1 2 0 0 25 0 2451.2745 Q16630 Q16630 432 456 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes yes 2;3 0.0012237 54.234 By MS/MS 2.83 1.07 1 1 2 2 6 20072000 0 0 20072000 1448 1393 1519 6458;6459;6460;6461;6462;6463 5374;5375;5376 5375 3 0 0 4038500 AVSDMIMELAVHAQFITTTFRPELLESADK LFDEIDQALDAQHRKAVSDMIMELAVHAQF ITTTFRPELLESADKFYGVKFRNKVSHIDV K A V D K F 4 1 0 2 0 1 3 0 1 2 3 1 2 2 1 2 3 0 0 2 0 0 30 1 3362.689 Q9UQE7 Q9UQE7 1156 1185 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3;4 7.9382E-56 173.92 By MS/MS 2 0 2 2 27055000 0 0 27055000 1449 2222 1520 6464;6465 5377;5378 5377 2 0 0 6114000 AVSDWIDEQEK EAVQNMVSHTERALKAVSDWIDEQEKGSSE RALKAVSDWIDEQEKGSSEQAESDNMDVPP K A V E K G 1 0 0 2 0 1 2 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 11 0 1318.6041 Q12906 Q12906 44 54 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 1.7759E-09 166.07 By MS/MS 1.5 0.5 1 1 2 19645000 0 19645000 0 1450 1211 1521 6466;6467 5379;5380 5380 2 0 8928600 0 AVSEGNLLLLHEALAK LLKKYHLMQFAEVTRAVSEGNLLLLHEALA VSEGNLLLLHEALAKHEAFFIRCGIFLILE R A V A K H 3 0 1 0 0 0 2 1 1 0 5 1 0 0 0 1 0 0 0 1 0 0 16 0 1676.9461 Q5JVF3 Q5JVF3 285 300 PCID2 PCI domain-containing protein 2 yes yes 3 0.033754 41.912 By MS/MS 5 0 1 1 13578000 0 0 13578000 1451 1441 1522 6468 5381 5381 1 0 0 1893800 AVSGASAGDYSDAIETLLTAIAVIK IMKRNRAISSSAISKAVSGASAGDYSDAIE SDAIETLLTAIAVIKQSRVANDERCRVLIS K A V I K Q 6 0 0 2 0 0 1 2 0 3 2 1 0 0 0 3 2 0 1 2 0 0 25 0 2435.2795 Q8N684 Q8N684 355 379 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 3 0.00013275 58.457 By MS/MS 2.5 1.12 1 1 1 1 4 3158500 0 0 3158500 1452 1610 1523 6469;6470;6471;6472 5382;5383 5383 2 0 0 604080 AVSILPLLGHGVPR PSILKKTSAYGPPTRAVSILPLLGHGVPRL RAVSILPLLGHGVPRLPPGRKPPGPPPGPP R A V P R L 1 1 0 0 0 0 0 2 1 1 3 0 0 0 2 1 0 0 0 2 0 0 14 0 1427.8613 Q9Y2W2 Q9Y2W2 179 192 WBP11 WW domain-binding protein 11 yes yes 3 0.0038715 73.881 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 10863000 0 4805800 6057200 1453 2253 1524 6473;6474;6475 5384;5385;5386;5387 5387 4 0 2093100 1174800 AVSISTEPPTYLR SEVEEILDGNDEKYKAVSISTEPPTYLREQ YKAVSISTEPPTYLREQKAKRNSQWVPTLP K A V L R E 1 1 0 0 0 0 1 0 0 1 1 0 0 0 2 2 2 0 1 1 0 0 13 0 1432.7562 Q12824 Q12824 109 121 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes yes 2 0.00030653 139.43 By matching By MS/MS By MS/MS 4 0.894 2 1 2 1 1 3 76034000 7271800 20801000 47961000 1454 1202 1525 6476;6477;6478;6479;6480 5388;5389;5390 5388 3 8390000 5361900 6896000 AVSPLLLTTTNSSEGLSMGNYIGLINR AAAKLAVEILNKEKKAVSPLLLTTTNSSEG SEGLSMGNYIGLINRIAQKKRLTVNYEQCA K A V N R I 1 1 3 0 0 0 1 3 0 2 5 0 1 0 1 4 3 0 1 1 0 0 27 0 2820.4691 P19525 P19525 81 107 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 3 2.0774E-10 79.589 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 22753000 0 7518900 15234000 1455 609 1526 6481;6482;6483 5391;5392;5393 5392 3 0 2663200 2954700 AVSSAIAQLLGEVAQGNENYAGIAAR ETMEKCTQDLGNSTKAVSSAIAQLLGEVAQ EVAQGNENYAGIAARDVAGGLRSLAQAARG K A V A R D 7 1 2 0 0 2 2 3 0 2 2 0 0 0 0 2 0 0 1 2 0 0 26 0 2572.3245 Q9Y490 Q9Y490 1097 1122 TLN1 Talin-1 yes yes 3 0.00015479 56.298 By MS/MS 1 0 1 1 3471400 0 0 3471400 1456 2284 1527 6484 5394 5394 0 0 0 747970 AVSVTPIR ______________________________ ______________________________ M A V I R D 1 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 Q9NR56 Q9NR56 2 9 MBNL1 Muscleblind-like protein 1 yes yes 2 0.070377 58.687 By MS/MS 1 0 1 1 75938000 0 75938000 0 1457 2041 1528 6485 5395 5395 1 0 37118000 0 AVSVTPIRDTK ______________________________ ______________________________ M A V T K W 1 1 0 1 0 0 0 0 0 1 0 1 0 0 1 1 2 0 0 2 0 0 11 1 1185.6717 Q9NR56 Q9NR56 2 12 MBNL1 Muscleblind-like protein 1 yes yes 2 0.014347 76.943 By MS/MS By matching 5.5 0.5 1 1 1 1 4426300 0 2438800 1987500 1458 2041 1529 6486;6487 5396 5396 1 0 628650 297350 AVTDKFLSAIVSSVDK EEVKTRLDSSIRNMRAVTDKFLSAIVSSVD VTDKFLSAIVSSVDKIPYGMRFIAKVLKDS R A V D K I 2 0 0 2 0 0 0 0 0 1 1 2 0 1 0 3 1 0 0 3 0 0 16 1 1678.9142 P46940 P46940 1140 1155 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 0.00080039 85.362 By MS/MS 2 0 1 1 5965800 0 5965800 0 1459 835 1530 6488 5397 5397 1 0 2686500 0 AVTEQGAELSNEER AEQAERYDDMATCMKAVTEQGAELSNEERN KAVTEQGAELSNEERNLLSVAYKNVVGGRR K A V E R N 2 1 1 0 0 1 4 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1531.7114 P27348 P27348 28 41 YWHAQ 14-3-3 protein theta yes yes 2 1.8759E-148 290.48 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 70649000 0 2532000 68117000 1460 676 1531 6489;6490;6491 5398;5399;5400 5400 3 0 1453900 11619000 AVTEQGHELSNEER AEQAERYDDMAAAMKAVTEQGHELSNEERN KAVTEQGHELSNEERNLLSVAYKNVVGARR K A V E R N 1 1 1 0 0 1 4 1 1 0 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1597.7332 P31946 P31946 30 43 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2;3 3.0991E-74 249.2 By MS/MS By MS/MS 6.75 0.968 4 3 1 3 5 177970000 0 10124000 167850000 1461 724 1532 6492;6493;6494;6495;6496;6497;6498;6499 5401;5402;5403;5404;5405;5406;5407 5404 7 0 4370400 28708000 AVTGYKDPYTGQQISLFQAMQK VVGPELHHKLLSAERAVTGYKDPYTGQQIS PYTGQQISLFQAMQKGLIVREHGIRLLEAQ R A V Q K G 2 0 0 1 0 4 0 2 0 1 1 2 1 1 1 1 2 0 2 1 0 0 22 1 2473.2311 Q15149 Q15149 2910 2931 PLEC Plectin yes yes 3 2.4937E-10 99.407 By MS/MS 1 0 1 1 13418000 0 13418000 0 1462 1348 1533 6500 5408 5408 1 0 6558300 0 AVTGYNDPETGNIISLFQAMNK LVGIEFKEKLLSAERAVTGYNDPETGNIIS PETGNIISLFQAMNKELIEKGHGIRLLEAQ R A V N K E 2 0 3 1 0 1 1 2 0 2 1 1 1 1 1 1 2 0 1 1 0 0 22 0 2382.1526 P15924 P15924 2335 2356 DSP Desmoplakin yes yes 2;3 9.5593E-35 189.33 By MS/MS By MS/MS By MS/MS 4.46 3.03 4 2 1 2 2 2 9 2 2 61142000 14483000 11603000 35056000 1463 572 1534 6501;6502;6503;6504;6505;6506;6507;6508;6509;6510;6511;6512;6513 5409;5410;5411;5412;5413;5414;5415;5416;5417;5418;5419 5419 11 11738000 5671300 7553300 AVTGYTDPYTGQQISLFQAMQK VIGPDVFAKLLSAERAVTGYTDPYTGQQIS PYTGQQISLFQAMQKGLIVREHGIRLLEAQ R A V Q K G 2 0 0 1 0 4 0 2 0 1 1 1 1 1 1 1 3 0 2 1 0 0 22 0 2446.1839 P58107 P58107 687 708 EPPK1 Epiplakin yes no 2;3 1.5986E-247 321.09 By MS/MS 1.67 0.745 3 2 1 6 163020000 0 163020000 0 1464 958 1535 6514;6515;6516;6517;6518;6519 5420;5421;5422;5423;5424;5425 5421 5 0 78338000 0 AVTIFIR TKDKMLVIEQCKNSRAVTIFIRGGNKMIIE IEQCKNSRAVTIFIRGGNKMIIEEAKRSLH R A V I R G 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 7 0 818.50142 P48643 P48643 382 388 CCT5 T-complex protein 1 subunit epsilon yes yes 2 0.034519 88.734 By MS/MS By MS/MS 6.2 3.12 1 2 2 2 3 12561000 0 5191400 7369200 1465 845 1536 6520;6521;6522;6523;6524 5426;5427;5428 5426 3 0 5907800 5285400 AVTLDKDAYYR ______________________________ ______________________________ M A V Y R R 2 1 0 2 0 0 0 0 0 0 1 1 0 0 0 0 1 0 2 1 0 0 11 1 1313.6616 Q9Y5B9 Q9Y5B9 2 12 SUPT16H FACT complex subunit SPT16 yes yes 2 2.4701E-14 182.76 By matching By MS/MS By MS/MS 5.29 3.84 1 2 1 1 2 1 2 4 307340000 6063500 59103000 242170000 1466 2296 1537 6525;6526;6527;6528;6529;6530;6531 5429;5430;5431;5432;5433 5429 5 3403500 42542000 62093000 AVTLNPDNSYIK REGSVKSFSLGPLRKAVTLNPDNSYIKVFL LRKAVTLNPDNSYIKVFLALKLQDVHAEAE K A V I K V 1 0 2 1 0 0 0 0 0 1 1 1 0 0 1 1 1 0 1 1 0 0 12 0 1333.6878 Q13325 Q13325 207 218 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 yes yes 2 0.024344 81.865 By MS/MS 4 0 1 1 5515900 0 5515900 0 1467 1238 1538 6532 5434 5434 1 0 1830500 0 AVTNEPEEEELATLSEEEIAMAVTAWEK PYLQKQPQPSPAEGRAVTNEPEEEELATLS LSEEEIAMAVTAWEKGLESLPPLRPQQNPV R A V E K G 5 0 1 0 0 0 9 0 0 1 2 1 1 0 1 1 3 1 0 2 0 0 28 0 3118.454 P56192 P56192 215 242 MARS Methionine--tRNA ligase, cytoplasmic yes yes 3 2.4812E-11 87.439 By MS/MS 2 0 1 1 15790000 0 0 15790000 1468 949 1539 6533 5435 5435 1 0 0 3568200 AVTPPMPLLTPATPGGLPPAAAVAAAAATAK MNLFDLGGQYLRVGKAVTPPMPLLTPATPG LPPAAAVAAAAATAKITAQEAVAGAAVLGT K A V A K I 11 0 0 0 0 0 0 2 0 0 3 1 1 0 7 0 4 0 0 2 0 0 31 0 2793.5463 Q9UHX1 Q9UHX1 302 332 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2;3;4 9.0722E-10 65.495 By MS/MS By MS/MS 3.75 1.59 1 1 4 3 1 1 1 5 7 192870000 0 109640000 83238000 1469 2158 1540 6534;6535;6536;6537;6538;6539;6540;6541;6542;6543;6544;6545 5436;5437;5438;5439;5440;5441;5442;5443 5437 8 0 37148000 14630000 AVVGDAQYHHFR QPFEVLIIASDDGFKAVVGDAQYHHFRHRL GFKAVVGDAQYHHFRHRLPLARVRLVEVGG K A V F R H 2 1 0 1 0 1 0 1 2 0 0 0 0 1 0 0 0 0 1 2 0 0 12 0 1398.6793 P47929 P47929 100 111 LGALS7 Galectin-7 yes yes 3 0.00089651 103.43 By MS/MS By matching 7.5 3.77 1 1 2 3 1 27595000 26868000 0 727870 1470 840 1541 6546;6547;6548;6549 5444;5445;5446 5445 3 26870000 0 1591900 AVVGVVAGGGR KLPSGSKKVISSANRAVVGVVAGGGRIDKP SANRAVVGVVAGGGRIDKPILKAGRAYHKY R A V G R I 2 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 4 0 0 11 0 940.54541 P62917 P62917 164 174 RPL8 60S ribosomal protein L8 yes yes 2 1.5901E-09 166.96 By matching By MS/MS By MS/MS 4.25 2.08 2 1 4 2 2 2 2 1 2 7 7 717720000 24385000 211100000 482230000 1471 1052 1542 6550;6551;6552;6553;6554;6555;6556;6557;6558;6559;6560;6561;6562;6563;6564;6565 5447;5448;5449;5450;5451;5452;5453;5454;5455;5456 5455 8 28135000 79194000 75331000 AVVIVDDR ELLEEAFSQFGPIERAVVIVDDRGRSTGKG QFGPIERAVVIVDDRGRSTGKGIVEFASKP R A V D R G 1 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 885.49198 P23246;Q15233 P23246 400 407 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 2 0.00010051 146.94 By MS/MS By MS/MS By MS/MS 4.17 1.57 2 3 2 2 2 1 2 5 5 708490000 31855000 250060000 426570000 1472 638;1351 1543 6566;6567;6568;6569;6570;6571;6572;6573;6574;6575;6576;6577 5457;5458;5459;5460;5461;5462;5463;5464;5465;5466;5467;5468 5464 12 29194000 96057000 78414000 AVVIVDDRGR ELLEEAFSQFGPIERAVVIVDDRGRSTGKG GPIERAVVIVDDRGRSTGKGIVEFASKPAA R A V G R S 1 2 0 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 10 1 1098.6146 P23246;Q15233 P23246 400 409 SFPQ;NONO Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein no no 2 0.065661 90.37 By MS/MS 2 0 1 1 19044000 0 19044000 0 1473 638;1351 1544 6578 5469 5469 1 0 8575600 0 AVVIVDDRGRPSGK ELLEEAFSVFGQVERAVVIVDDRGRPSGKG RAVVIVDDRGRPSGKGIVEFSGKPAARKAL R A V G K G 1 2 0 2 0 0 0 2 0 1 0 1 0 0 1 1 0 0 0 3 0 0 14 2 1467.8158 Q15233 Q15233 177 190 NONO Non-POU domain-containing octamer-binding protein yes yes 3 0.01663 63.76 By MS/MS 4 0 1 1 3735800 0 3735800 0 1474 1351 1545 6579 5470 5470 1 0 1239800 0 AVVMPLQLIQEQAASPNAEIHILK PLSHRTVTGAKPLKKAVVMPLQLIQEQAAS QEQAASPNAEIHILKNKGRKRKLESLDALE K A V L K N 4 0 1 0 0 3 2 0 1 3 3 1 1 0 2 1 0 0 0 2 0 0 24 0 2612.436 Q14807 Q14807 529 552 KIF22 Kinesin-like protein KIF22 yes yes 3 0.00073882 53.747 By MS/MS 3 0 1 1 3204300 0 3204300 0 1475 1320 1546 6580 5471 5471 1 0 1366000 0 AVVPGVKPQDWISAAR GSGVGIGDRFKIEGRAVVPGVKPQDWISAA VVPGVKPQDWISAARVLVDGEEHVGFLKTD R A V A R V 3 1 0 1 0 1 0 1 0 1 0 1 0 0 2 1 0 1 0 3 0 0 16 1 1692.9311 Q9NPA0 Q9NPA0 51 66 EMC7 ER membrane protein complex subunit 7 yes yes 3 0.0057968 62.646 By MS/MS By MS/MS 7 0 2 1 1 7966500 0 3019200 4947300 1476 2023 1547 6581;6582 5472;5473 5472 2 0 1733600 877870 AVVQVFEGTSGIDAK GTKRSGQVLEVSGSKAVVQVFEGTSGIDAK AVVQVFEGTSGIDAKKTSCEFTGDILRTPV K A V A K K 2 0 0 1 0 1 1 2 0 1 0 1 0 1 0 1 1 0 0 3 0 0 15 0 1519.7882 P21281 P21281 94 108 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 2 0.00062673 103.91 By MS/MS 4 0 1 1 7382900 0 0 7382900 1477 621 1548 6583 5474 5474 1 0 0 1205900 AVVVNAAQLASYSQSK GVLTLWRGCIPTMARAVVVNAAQLASYSQS VVVNAAQLASYSQSKQFLLDSGYFSDNILC R A V S K Q 4 0 1 0 0 2 0 0 0 0 1 1 0 0 0 3 0 0 1 3 0 0 16 0 1634.8628 Q02978 Q02978 191 206 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 2 3.8969E-26 199.43 By matching By MS/MS 6 0 2 1 1 10114000 0 2399100 7714600 1478 1151 1549 6584;6585 5475 5475 1 0 830500 1154200 AVVYSNTIQSIMAIVK IHEDGYSEEECRQYRAVVYSNTIQSIMAIV VVYSNTIQSIMAIVKAMGNLQIDFADPSRA R A V V K A 2 0 1 0 0 1 0 0 0 3 0 1 1 0 0 2 1 0 1 3 0 0 16 0 1735.9542 P04899 P04899 71 86 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes yes 2 3.8439E-05 147.72 By MS/MS 6 0 1 1 7855700 0 7855700 0 1479 421 1550 6586 5476 5476 1 0 2719400 0 AVYDEQGTVDEDSPVLTQDR ILGKVYSVLSDREQRAVYDEQGTVDEDSPV QGTVDEDSPVLTQDRDWEAYWRLLFKKISL R A V D R D 1 1 0 4 0 2 2 1 0 0 1 0 0 0 1 1 2 0 1 3 0 0 20 0 2236.0132 Q8WXX5 Q8WXX5 76 95 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 6.5505E-141 277.31 By MS/MS 6 0 1 1 11553000 0 0 11553000 1480 1698 1551 6587 5477 5477 1 0 0 1728400 AVYHNMPLIWKPGYLDR GYALLGKVELQQGLRAVYHNMPLIWKPGYL YHNMPLIWKPGYLDRALQVMEKVAASPEDI R A V D R A 1 1 1 1 0 0 0 1 1 1 2 1 1 0 2 0 0 1 2 1 0 0 17 1 2072.0666 Q92552 Q92552 242 258 MRPS27 28S ribosomal protein S27, mitochondrial yes yes 4 0.0071849 55.589 By MS/MS 5 0 1 1 7659800 0 0 7659800 1481 1707 1552 6588 5478 5478 1 0 0 1068400 AVYIEDVIER CLTTINIMTSPNMPKAVYIEDVIERVIQYT PNMPKAVYIEDVIERVIQYTKFHLQNTLYP K A V E R V 1 1 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 2 0 0 10 0 1205.6292 Q6KC79 Q6KC79 1326 1335 NIPBL Nipped-B-like protein yes yes 2 0.0083854 90.601 By MS/MS 1 0 1 1 14307000 0 0 14307000 1482 1480 1553 6589 5479 5479 1 0 0 3082600 AVYTLYQQR MQIQPNREDTETLIKAVYTLYQQRGLILPV TETLIKAVYTLYQQRGLILPVRTLLLKFFS K A V Q R G 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 2 1 0 0 9 0 1140.5928 Q9NXF1 Q9NXF1 505 513 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.0091882 89.55 By MS/MS By matching 2.5 1.12 1 1 1 1 2 2 907680000 0 8042400 899640000 1483 2089 1554 6590;6591;6592;6593 5480 5480 1 0 3686800 151750000 AWEGNYLASKPDTPQTSGTFVPVANELK VEMLKGQRADLGLQRAWEGNYLASKPDTPQ PQTSGTFVPVANELKRKDKYMNVLFSCHVR R A W L K R 3 0 2 1 0 1 2 2 0 0 2 2 0 1 3 2 3 1 1 2 0 0 28 1 3019.4927 O94832 O94832 822 849 MYO1D Unconventional myosin-Id yes yes 3 3.4627E-15 96.44 By MS/MS 2 0 1 1 7913200 0 7913200 0 1484 299 1555 6594 5481 5481 1 0 3563400 0 AWGILTFK RVRPDYTAQNLDHGKAWGILTFKGKTESEA QNLDHGKAWGILTFKGKTESEAREIEHVMY K A W F K G 1 0 0 0 0 0 0 1 0 1 1 1 0 1 0 0 1 1 0 0 0 0 8 0 934.52764 P82930 P82930 114 121 MRPS34 28S ribosomal protein S34, mitochondrial yes yes 2 0.0044378 101.64 By MS/MS By MS/MS 7 0 2 1 1 13039000 0 2773600 10266000 1485 1102 1556 6595;6596 5482;5483 5483 2 0 1592600 1821600 AWGPGLEGGVVGK FEVKVGTECGNQKVRAWGPGLEGGVVGKSA VRAWGPGLEGGVVGKSADFVVEAIGDDVGT R A W G K S 1 0 0 0 0 0 1 5 0 0 1 1 0 0 1 0 0 1 0 2 0 0 13 0 1225.6455 P21333 P21333 581 593 FLNA Filamin-A yes yes 2 0.014487 83.499 By MS/MS 1.5 0.5 1 1 2 25264000 0 25264000 0 1486 623 1557 6597;6598 5484 5484 1 0 12193000 0 AWGPGLHGGIVGR FEVQVGPEAGMQKVRAWGPGLHGGIVGRSA VRAWGPGLHGGIVGRSADFVVESIGSEVGS R A W G R S 1 1 0 0 0 0 0 5 1 1 1 0 0 0 1 0 0 1 0 1 0 0 13 0 1275.6836 O75369 O75369 554 566 FLNB Filamin-B yes yes 3 0.015452 62.528 By MS/MS By MS/MS 2 1.22 2 1 1 1 3 20637000 0 4966300 15671000 1487 254 1558 6599;6600;6601;6602 5485;5486 5485 2 0 2427500 3398600 AWLLSMIQSK NWFKITIPYGRKYDKAWLLSMIQSKCSVPF RKYDKAWLLSMIQSKCSVPFTPIEFHYENT K A W S K C 1 0 0 0 0 1 0 0 0 1 2 1 1 0 0 2 0 1 0 0 0 0 10 0 1175.6373 Q9UBU9 Q9UBU9 133 142 NXF1 Nuclear RNA export factor 1 yes yes 2 0.0004895 135.83 By MS/MS By MS/MS 3 0 2 1 1 16434000 0 3494500 12940000 1488 2136 1559 6603;6604 5487;5488 5488 2 0 1489700 2509700 AWPVFEHNILTR CHLLKTIHVASHSRKAWPVFEHNILTRCSL SRKAWPVFEHNILTRCSLHLGNRRGVFLPY K A W T R C 1 1 1 0 0 0 1 0 1 1 1 0 0 1 1 0 1 1 0 1 0 0 12 0 1481.7779 P03243;P03244 P03243 381 392 yes no 2;3 3.9127E-16 151.83 By MS/MS By MS/MS 3.73 1.95 4 5 3 4 5 3 1 1 11 15 362830000 0 83046000 279780000 1489 406 1560 6605;6606;6607;6608;6609;6610;6611;6612;6613;6614;6615;6616;6617;6618;6619;6620;6621;6622;6623;6624;6625;6626;6627;6628;6629;6630 5489;5490;5491;5492;5493;5494;5495;5496;5497;5498;5499;5500;5501;5502;5503;5504;5505;5506;5507;5508;5509;5510;5511;5512;5513;5514;5515;5516;5517;5518;5519;5520;5521;5522;5523;5524;5525;5526;5527;5528;5529;5530;5531;5532 5530 44 0 26643000 53581000 AWQGAMDAGAASR DWGEHNQRLEEHQARAWQGAMDAGAASREH ARAWQGAMDAGAASREHARWQGGERGLSGP R A W S R E 5 1 0 1 0 1 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 0 13 0 1290.5775 Q14151 Q14151 861 873 SAFB2 Scaffold attachment factor B2 yes yes 2 3.541E-11 175.65 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 40207000 0 12122000 28085000 1490 1285 1561 6631;6632;6633;6634 5533;5534;5535;5536 5536 4 0 5402200 6209900 AWTVEQLR ______________________________ AAAVPQRAWTVEQLRSEQLPKKDIIKFLQE R A W L R S 1 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 1 0 1 0 0 8 0 1001.5294 Q00688 Q00688 9 16 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 4.8611E-06 158.12 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 98505000 0 39917000 58588000 1491 1126 1562 6635;6636;6637;6638;6639 5537;5538;5539 5537 3 0 18177000 9518400 AYAALAALEK GQKFQGAGSNKKVAKAYAALAALEKLFPDT KKVAKAYAALAALEKLFPDTPLALDANKKK K A Y E K L 5 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1019.5651 Q12906 Q12906 578 587 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.00044539 117.89 By MS/MS By MS/MS 3.38 1.8 1 2 2 1 1 1 3 5 204290000 0 140530000 63764000 1492 1211 1563 6640;6641;6642;6643;6644;6645;6646;6647 5540;5541;5542;5543;5544;5545;5546 5541 7 0 62265000 11820000 AYAGDKAEEIGR PQVQQVQDDGHRLQKAYAGDKAEEIGRHMQ LQKAYAGDKAEEIGRHMQAVAEAWAQLQGS K A Y G R H 3 1 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 0 1 0 0 0 12 1 1278.6204 O15020 O15020 1869 1880 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.070717 42.789 By MS/MS 1 0 1 1 1331200 0 1331200 0 1493 160 1564 6648 5547 5547 1 0 650660 0 AYAQQLADWAR GDLVSCFQERARIEKAYAQQLADWARKWRG RIEKAYAQQLADWARKWRGTVEKGPQYGTL K A Y A R K 4 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 11 0 1291.6309 Q9UKS6 Q9UKS6 52 62 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes yes 2 0.00028758 133.57 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 19979000 0 5170200 14809000 1494 2183 1565 6649;6650;6651 5548;5549 5548 2 0 1332700 2285500 AYDASLAMLMR LITDVALHEVVDLFRAYDASLAMLMRKGQD DLFRAYDASLAMLMRKGQDSIEPVPGQKGK R A Y M R K 3 1 0 1 0 0 0 0 0 0 2 0 2 0 0 1 0 0 1 0 0 0 11 0 1240.5944 Q9NR50 Q9NR50 123 133 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes yes 2 3.6301E-05 147.19 By MS/MS 4 0 1 1 3523900 0 0 3523900 1495 2040 1566 6652 5550 5550 1 0 0 575570 AYDGTTYLPGIVGLNNIK KQQIANLDKQAKLSRAYDGTTYLPGIVGLN GTTYLPGIVGLNNIKANDYANAVLQALSNV R A Y I K A 1 0 2 1 0 0 0 3 0 2 2 1 0 0 1 0 2 0 2 1 0 0 18 0 1907.9993 Q53GS9 Q53GS9 214 231 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2;3 1.663E-05 105.65 By MS/MS By MS/MS 3.33 0.471 4 2 5 1 38453000 0 38453000 0 1496 1426 1567 6653;6654;6655;6656;6657;6658 5551;5552;5553;5554 5552 4 0 14030000 0 AYDLLDKVNALLPTETFIPVIR ADKLTVKFWRALLSKAYDLLDKVNALLPTE VNALLPTETFIPVIRGLVGNPLPSVRRKAL K A Y I R G 2 1 1 2 0 0 1 0 0 2 4 1 0 1 2 0 2 0 1 2 0 0 22 1 2500.3941 Q9H583 Q9H583 1584 1605 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3 1.6886E-19 125.23 By MS/MS 1.5 0.5 1 1 2 4276600 0 0 4276600 1497 1984 1568 6659;6660 5555 5555 1 0 0 925670 AYEAAASALQIATHTAFVAK STESCNQQLDLALCRAYEAAASALQIATHT ASALQIATHTAFVAKAMQADISQAAQILSS R A Y A K A 8 0 0 0 0 1 1 0 1 1 1 1 0 1 0 1 2 0 1 1 0 0 20 0 2033.0582 P42166 P42166 572 591 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 2.3059E-36 204.28 By MS/MS 2.8 1.33 1 1 2 1 5 56544000 0 0 56544000 1498 798 1569 6661;6662;6663;6664;6665 5556;5557 5557 2 0 0 11601000 AYEFAER SAVQVLIEHIGNLDRAYEFAERCNEPAVWS EHIGNLDRAYEFAERCNEPAVWSQLAKAQL R A Y E R C 2 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 7 0 884.40283 Q00610;P53675 Q00610 1095 1101 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.024818 97.068 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 29877000 0 5961900 23916000 1499 1125 1570 6666;6667;6668 5558;5559 5559 2 0 2684700 5024600 AYFHLLNQIAPK WQKINNFSADIKDSKAYFHLLNQIAPKGQK DSKAYFHLLNQIAPKGQKEGEPRIDINMSG K A Y P K G 2 0 1 0 0 1 0 0 1 1 2 1 0 1 1 0 0 0 1 0 0 0 12 0 1413.7769 P13797;Q14651 P13797 301 312 PLS3;PLS1 Plastin-3;Plastin-1 yes no 2;3 0.0012925 114.89 By MS/MS By MS/MS 3 0 2 1 1 13152000 0 4918500 8233700 1500 551 1571 6669;6670 5560;5561 5560 2 0 2096800 1597000 AYFLGYMVHR MLPHVGVSDFCETKKAYFLGYMVHRLLLAA CETKKAYFLGYMVHRLLLAALGRRELDDRD K A Y H R L 1 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 2 1 0 0 10 0 1255.6172 P30876 P30876 362 371 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 3 0.002276 87.308 By MS/MS 2 0 1 1 2898000 0 0 2898000 1501 715 1572 6671 5562 5562 1 0 0 654900 AYGDFAWSNPLHPDIFPGLR TVYSGEEKLTELLVKAYGDFAWSNPLHPDI AWSNPLHPDIFPGLRKIEAEIVRIACSLFN K A Y L R K 2 1 1 2 0 0 0 2 1 1 2 0 0 2 3 1 0 1 1 0 0 0 20 0 2272.1065 O95470 O95470 163 182 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 3 1.6512E-06 96.544 By MS/MS By MS/MS 4 0 2 1 1 22139000 0 3965700 18173000 1502 328 1573 6672;6673 5563;5564 5564 2 0 1316100 2968300 AYGELPEHAK DVILKYNADEARSLKAYGELPEHAKINETD ARSLKAYGELPEHAKINETDTFGPGDDDEI K A Y A K I 2 0 0 0 0 0 2 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 10 0 1113.5455 P47813;O14602 P47813 105 114 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 0.015314 85.666 By matching By MS/MS 7.33 0.471 2 1 1 2 22345000 0 1667300 20677000 1503 138 1574 6674;6675;6676 5565 5565 1 0 957390 3382000 AYGPGIEPTGNMVK PGAPLRPKLNPKKARAYGPGIEPTGNMVKK RAYGPGIEPTGNMVKKRAEFTVETRSAGQG R A Y V K K 1 0 1 0 0 0 1 3 0 1 0 1 1 0 2 0 1 0 1 1 0 0 14 0 1432.7021 P21333 P21333 286 299 FLNA Filamin-A yes yes 2 0.0048987 88.596 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 33617000 0 3363900 30253000 1504 623 1575 6677;6678;6679 5566;5567 5567 2 0 1514800 6365200 AYGTNYIETLR GWNQIQFNLLDFTRRAYGTNYIETLRVQIH FTRRAYGTNYIETLRVQIHANCRIRRVYFS R A Y L R V 1 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 2 0 0 0 11 0 1299.6459 Q9Y6A4 Q9Y6A4 143 153 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.000328 128 By MS/MS 7 0 1 1 22232000 0 0 22232000 1505 2310 1576 6680 5568 5568 1 0 0 3945000 AYHEQLSVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLSVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 1 1 0 1 2 0 0 24 0 2749.284 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2 P68363 281 304 TUBA1B;TUBA4A;TUBA1A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain no no 3 2.5846E-21 136.62 By matching By MS/MS By matching 5.2 1.17 2 1 1 1 1 1 3 66242000 4958900 10196000 51088000 1506 1077;1515;1078 1577 6681;6682;6683;6684;6685 5569 5569 1 3868800 3383500 7394200 AYHEQLTVAEITNACFEPANQMVK HFPLATYAPVISAEKAYHEQLTVAEITNAC EITNACFEPANQMVKCDPRHGKYMACCLLY K A Y V K C 4 0 2 0 1 2 3 0 1 1 1 1 1 1 1 0 2 0 1 2 0 0 24 0 2763.2996 Q9BQE3 Q9BQE3 281 304 TUBA1C Tubulin alpha-1C chain yes yes 3 0.0028093 44.711 By MS/MS 5 0 1 1 9844800 0 9844800 0 1507 1883 1578 6686 5570 5570 1 0 2537700 0 AYHNSPAYLAYINAK NEYEAEKIEYNESMKAYHNSPAYLAYINAK AYHNSPAYLAYINAKSRAEAALEEESRQRQ K A Y A K S 4 0 2 0 0 0 0 0 1 1 1 1 0 0 1 1 0 0 3 0 0 0 15 0 1694.8417 Q969G3 Q969G3 132 146 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 2 7.6793E-18 193.32 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 30917000 0 3755000 27162000 1508 1741 1579 6687;6688;6689 5571;5572 5572 2 0 1246200 4328400 AYILNLVK VSDYAQMDRVLREERAYILNLVKQIKKTGC RVLREERAYILNLVKQIKKTGCNVLLIQKS R A Y V K Q 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 1 1 0 0 8 0 932.5695 P50991 P50991 281 288 CCT4 T-complex protein 1 subunit delta yes yes 2 0.0061714 98.415 By matching By MS/MS By matching 4.33 0.471 2 1 1 1 1 14094000 3903300 9051100 1139500 1509 886 1580 6690;6691;6692 5573 5573 1 3045200 3003700 158940 AYKEELEGQLGPMAQETQAR QELTALMEETMKEVKAYKEELEGQLGPMAQ LEGQLGPMAQETQARVSKELQAAQARLGSD K A Y A R V 3 1 0 0 0 3 4 2 0 0 2 1 1 0 1 0 1 0 1 0 0 0 20 1 2248.0794 CON__Q03247 CON__Q03247 90 109 yes yes 2;3 0 357.22 By MS/MS By MS/MS By MS/MS 7.92 1.47 1 5 2 7 5 4 6 3 15 591110000 91940000 8720700 490450000 + 1510 72 1581;1582 6693;6694;6695;6696;6697;6698;6699;6700;6701;6702;6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716 5574;5575;5576;5577;5578;5579;5580;5581;5582;5583;5584;5585;5586;5587;5588;5589;5590;5591;5592;5593;5594;5595;5596 5589 56 23 74309000 12220000 114410000 AYLEEECPATLR KQKWEAEPVYVQRAKAYLEEECPATLRKYL RAKAYLEEECPATLRKYLKYSKNILDRQDP K A Y L R K 2 1 0 0 1 0 3 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 12 0 1450.6762 P25311 P25311 180 191 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 6.0393E-06 160.36 By MS/MS 8.5 0.5 1 1 2 17786000 17786000 0 0 1511 656 1583 6717;6718 5597 5597 1 11262000 0 0 AYLFAHAVDFVPSEENNLVGTLK LANQKQQHLAFRDRRAYLFAHAVDFVPSEE DFVPSEENNLVGTLKISGYVRGQTLNVNRL R A Y L K I 3 0 2 1 0 0 2 1 1 0 3 1 0 2 1 1 1 0 1 3 0 0 23 0 2533.2853 Q2NL82 Q2NL82 251 273 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 3 0.00070036 59.339 By MS/MS 2 0 1 1 1130100 0 1130100 0 1512 1406 1584 6719 5598 5598 1 0 508910 0 AYLPVNESFGFTADLR FEESQVAGTPMFVVKAYLPVNESFGFTADL YLPVNESFGFTADLRSNTGGQAFPQCVFDH K A Y L R S 2 1 1 1 0 0 1 1 0 0 2 0 0 2 1 1 1 0 1 1 0 0 16 0 1798.889 P13639 P13639 786 801 EEF2 Elongation factor 2 yes yes 2 4.6387E-05 144.1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 19444000 0 1973600 17471000 1513 547 1585 6720;6721;6722;6723 5599;5600;5601 5599 3 0 888750 3732300 AYLQQLR IYAKPANKQEDEVMRAYLQQLRQETGLRLC KQEDEVMRAYLQQLRQETGLRLCEKVFDPQ R A Y L R Q 1 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 890.4974 O15145 O15145 131 137 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 2 0.043058 80.377 By MS/MS 7 0 1 1 19940000 0 19940000 0 1514 170 1586 6724 5602 5602 1 0 11450000 0 AYNEAEVLYNR PECMALKADVVAKKRAYNEAEVLYNRSLNE AKKRAYNEAEVLYNRSLNEYKALKKDDEQL R A Y N R S 2 1 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 1 0 0 11 0 1340.6361 Q96SB8 Q96SB8 359 369 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2 0.033351 86.136 By MS/MS 2 0 1 1 2124200 0 2124200 0 1515 1833 1587 6725 5603 5603 0 0 956580 0 AYPDVAALSDGYWVVSNR SPHLPPSSYFNASGRAYPDVAALSDGYWVV DVAALSDGYWVVSNRVPIPWVSGTSASTPV R A Y N R V 3 1 1 2 0 0 0 1 0 0 1 0 0 0 1 2 0 1 2 3 0 0 18 0 1981.9534 Q5IS74;O14773 Q5IS74 448 465 TPP1 Tripeptidyl-peptidase 1 yes no 2;3 1.877E-16 178.22 By MS/MS 4.67 0.471 1 2 3 4318100 0 0 4318100 1516 144 1588 6726;6727;6728 5604;5605 5604 1 0 0 625570 AYPLADAHLTK ______________________________ VNPKAYPLADAHLTKKLLDLVQQSCNYKQL K A Y T K K 3 0 0 1 0 0 0 0 1 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1198.6346 P55769 P55769 10 20 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 2;3 0.0012192 112.11 By MS/MS By MS/MS By MS/MS 9.2 0.4 4 1 1 1 3 70407000 2996000 17229000 50182000 1517 943 1589 6729;6730;6731;6732;6733 5606;5607;5608;5609;5610;5611;5612;5613;5614;5615 5608 10 1681700 13796000 20367000 AYPLADAHLTKK ______________________________ NPKAYPLADAHLTKKLLDLVQQSCNYKQLR K A Y K K L 3 0 0 1 0 0 0 0 1 0 2 2 0 0 1 0 1 0 1 0 0 0 12 1 1326.7296 P55769 P55769 10 21 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 3 0.054356 42.446 By MS/MS 9 0 1 1 9846300 0 0 9846300 1518 943 1590 6734 5616 5616 1 0 0 3145300 AYQHGGVTGLSQY IDVALSQDSTYQGERAYQHGGVTGLSQY__ ERAYQHGGVTGLSQY_______________ R A Y Q Y - 1 0 0 0 0 2 0 3 1 0 1 0 0 0 0 1 1 0 2 1 0 0 13 0 1379.647 Q92900 Q92900 1117 1129 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0002845 134.68 By MS/MS By MS/MS By MS/MS 1.6 0.49 2 3 2 1 2 87508000 46688000 21547000 19273000 1519 1729 1591 6735;6736;6737;6738;6739 5617;5618;5619;5620 5618 4 55643000 9703000 4285900 AYQKQPTIFQNK ______________________________ TERAYQKQPTIFQNKKRVLLGETGKEKLPR R A Y N K K 1 0 1 0 0 3 0 0 0 1 0 2 0 1 1 0 1 0 1 0 0 0 12 1 1464.7725 P62280 P62280 9 20 RPS11 40S ribosomal protein S11 yes yes 3 0.024372 62.408 By MS/MS By matching 6.25 0.829 1 1 2 3 1 17942000 0 13592000 4350200 1520 1017 1592 6740;6741;6742;6743 5621 5621 1 0 5519900 771910 AYSDPSTGEPATYGELQQR EETSRALSAPRADAKAYSDPSTGEPATYGE PSTGEPATYGELQQRCRPDQLTGLSLLPLS K A Y Q R C 2 1 0 1 0 2 2 2 0 0 1 0 0 0 2 2 2 0 2 0 0 0 19 0 2068.9338 Q15149 Q15149 3317 3335 PLEC Plectin yes yes 2;3 3.6488E-180 293.13 By MS/MS By MS/MS 1 0 3 2 1 23082000 0 12586000 10496000 1521 1348 1593 6744;6745;6746 5622;5623;5624 5624 3 0 6151800 2261600 AYTIDPSNPMVLNHLANHFFFK KEADSIKNGVQLLSRAYTIDPSNPMVLNHL NPMVLNHLANHFFFKKDYSKVQHLALHAFH R A Y F K K 2 0 3 1 0 0 0 0 2 1 2 1 1 3 2 1 1 0 1 1 0 0 22 0 2575.2682 Q6PD62 Q6PD62 261 282 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 4 7.2701E-20 128.26 By MS/MS 2 0 1 1 7104800 0 0 7104800 1522 1494 1594 6747 5625 5625 1 0 0 1605600 AYTNFDAER EGDHSTPPSAYGSVKAYTNFDAERDALNIE AYGSVKAYTNFDAERDALNIETAIKTKGVD K A Y E R D 2 1 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 1085.4778 P07355;A6NMY6 P07355 29 37 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 9.8332E-05 142.79 By MS/MS By MS/MS By MS/MS 5.17 2.41 1 1 1 2 1 3 2 1 85540000 7699800 7051100 70789000 1523 459 1595 6748;6749;6750;6751;6752;6753 5626;5627;5628 5628 3 5952800 2274700 10591000 AYVAVDGIPQGVLER NPAPLSSPLNGVHDRAYVAVDGIPQGVLER AYVAVDGIPQGVLERNNVITLNITGKAGAT R A Y E R N 2 1 0 1 0 1 1 2 0 1 1 0 0 0 1 0 0 0 1 3 0 0 15 0 1585.8464 P16278 P16278 443 457 GLB1 Beta-galactosidase yes yes 2 0.0006548 102.53 By MS/MS 4 0 1 1 3458600 0 3458600 0 1524 576 1596 6754 5629 5629 1 0 1147800 0 AYVPALQMAFK FLLSLPHNIIELDVRAYVPALQMAFKLGLS LDVRAYVPALQMAFKLGLSYTPLAEVGLNA R A Y F K L 3 0 0 0 0 1 0 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 11 0 1237.6529 P78527 P78527 747 757 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0025081 107.66 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 23377000 752610 5145100 17479000 1525 1089 1597 6755;6756;6757;6758 5630;5631 5631 2 752610 2514900 3789800 AYVSLFMR WLVRDLRGKSEKEFKAYVSLFMRHLCEPGA KSEKEFKAYVSLFMRHLCEPGADGAETFAD K A Y M R H 1 1 0 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 8 0 985.50552 Q14839;Q12873;Q8TDI0 Q14839 1458 1465 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2 7.9084E-09 166.34 By MS/MS By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 28942000 1515900 7497400 19929000 1526 1321;1662;1205 1598 6759;6760;6761;6762 5632;5633;5634;5635 5634 4 1515900 3664600 4316800 AYVSTLMGVPGR LTVDTSLQNGRMSIKAYVSTLMGVPGRTMG SIKAYVSTLMGVPGRTMGVMFTPLTVKYAY K A Y G R T 1 1 0 0 0 0 0 2 0 0 1 0 1 0 1 1 1 0 1 2 0 0 12 0 1249.6489 O00303 O00303 215 226 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.0039532 105.52 By MS/MS By MS/MS 5 0 2 1 1 15383000 0 6577100 8806000 1527 118 1599 6763;6764 5636;5637 5637 1 0 1695400 1228300 AYVVLGQFLVLK GEVLGKKLEERGFDKAYVVLGQFLVLKKDE FDKAYVVLGQFLVLKKDEDLFREWLKDTCG K A Y L K K 1 0 0 0 0 1 0 1 0 0 3 1 0 1 0 0 0 0 1 3 0 0 12 0 1348.8119 O75531 O75531 42 53 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2 0.0012926 114.89 By MS/MS By MS/MS By MS/MS 9.75 0.433 1 3 1 1 2 24401000 5696300 2384000 16321000 1528 269 1600 6765;6766;6767;6768 5638;5639;5640 5639 3 10378000 12061000 6036000 AYYEFREEAYHSR RGVKRQRDEKDEHGRAYYEFREEAYHSRSK GRAYYEFREEAYHSRSKSPLPPEEEAKDEE R A Y S R S 2 2 0 0 0 0 3 0 1 0 0 0 0 1 0 1 0 0 3 0 0 0 13 1 1719.7641 Q1KMD3 Q1KMD3 213 225 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 4 0.0040479 76.262 By MS/MS 2 0 1 1 9112700 0 9112700 0 1529 1404 1601 6769 5641 5641 0 0 4103600 0 CCAAADPHECYAK LLLRLAKTYETTLEKCCAAADPHECYAKVF EKCCAAADPHECYAKVFDEFKPLVEEPQNL K C C A K V 4 0 0 1 3 0 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 13 0 1551.5905 CON__P02768-1;P02768 CON__P02768-1 384 396 ALB Serum albumin yes no 2;3 0.0011527 96.82 By MS/MS 9 0 2 2 7840400 7840400 0 0 + 1530 44 1602 6770;6771 5642;5643;5644 5643 3 4400900 0 0 CCAADDKEACFAVEGPK QLKTVMENFVAFVDKCCAADDKEACFAVEG AADDKEACFAVEGPKLVVSTQTALA_____ K C C P K L 4 0 0 2 3 0 2 1 0 0 0 2 0 1 1 0 0 0 0 1 0 0 17 1 1926.791 CON__P02769 CON__P02769 581 597 yes yes 3 0.0016327 72.184 By MS/MS 4 0 1 1 8909900 8909900 0 0 + 1531 45 1603 6772 5645 5645 1 6951300 0 0 CCTESLVNR CVLHEKTPVSDRVTKCCTESLVNRRPCFSA SDRVTKCCTESLVNRRPCFSALEVDETYVP K C C N R R 0 1 1 0 2 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1137.4907 CON__P02768-1;P02768;CON__P02769 CON__P02768-1 500 508 ALB Serum albumin no no 2 9.9681E-05 142.64 By MS/MS 6.5 1.71 1 1 1 1 1 1 6 132770000 132770000 0 0 + 1532 44;45 1604 6773;6774;6775;6776;6777;6778 5646;5647;5648;5649 5646 4 86722000 0 0 CDSSPDSAEDVR HVLKQDGQFSVLFTKCDSSPDSAEDVRKLC FTKCDSSPDSAEDVRKLCPDCPLLAPLNDS K C D V R K 1 1 0 3 1 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 0 0 12 0 1336.5201 CON__P12763;P02765 CON__P12763 132 143 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B no no 2 0.010803 93.058 By MS/MS 4.5 0.5 1 1 2 4343100 4343100 0 0 + 1533 55;395 1605 6779;6780 5650 5650 1 3400500 0 0 CEEILHK QTKRSSRRQSLELQKCEEILHKIVKYRFSW RQSLELQKCEEILHKIVKYRFSWPFREPVT K C E H K I 0 0 0 0 1 0 2 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 7 0 927.4484 Q9UIG0 Q9UIG0 1348 1354 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.012186 108.24 By MS/MS 5 0 1 1 0 0 0 0 1534 2164 1606 6781 5651 5651 1 0 0 0 CEELLEK KFVIHCNSPVWGADKCEELLEKTVKNCLAL SPVWGADKCEELLEKTVKNCLALADDKKLK K C E E K T 0 0 0 0 1 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 7 0 919.43208 O75367 O75367 286 292 H2AFY Core histone macro-H2A.1 yes yes 2 4.5878E-09 127.84 By MS/MS 5 0 1 1 0 0 0 0 1535 253 1607 6782 5652 5652 1 0 0 0 CEMEQQNQEYK QEMIGSVEEQLAQLRCEMEQQNQEYKILLD AQLRCEMEQQNQEYKILLDVKTRLEQEIAT R C E Y K I 0 0 1 0 1 3 3 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 11 0 1485.5864 CON__P02533;P02533;CON__Q61782;Q04695;CON__Q04695 CON__P02533 389 399 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 0.00032712 121.73 By MS/MS 5 0 1 1 3447800 0 0 3447800 + 1536 35;73 1608 6783 5653 5653 1 0 0 480910 CESAFLSK YARTDGKVFQFLNAKCESAFLSKRNPRQIN FQFLNAKCESAFLSKRNPRQINWTVLYRRK K C E S K R 1 0 0 0 1 0 1 0 0 0 1 1 0 1 0 2 0 0 0 0 0 0 8 0 940.43242 P83731 P83731 36 43 RPL24 60S ribosomal protein L24 yes yes 2 0.033395 77.072 By MS/MS 7 0 1 1 14128000 0 0 14128000 1537 1106 1609 6784 5654 5654 1 0 0 2506800 CFIVGADNVGSK NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ YPKCFIVGADNVGSKQMQQIRMSLRGKAVV K C F S K Q 1 0 1 1 1 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 12 0 1265.6074 P05388;Q8NHW5 P05388 27 38 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.00099972 102.06 By MS/MS 6 0 1 1 0 0 0 0 1538 432 1610 6785 5655 5655 1 0 0 0 CLAALASLR TLSVNDPPDVLDRQKCLAALASLRHAKWFQ VLDRQKCLAALASLRHAKWFQARANGLKSC K C L L R H 3 1 0 0 1 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 973.53789 Q12906 Q12906 203 211 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.024175 79.474 By matching By MS/MS 2 0 2 1 1 4950400 1097700 0 3852700 1539 1211 1611 6786;6787 5656 5656 1 1322600 0 870640 CLAYDFYPGK VVTSHQAPGEKKKLKCLAYDFYPGKIDVHW KKKLKCLAYDFYPGKIDVHWTRAGEVQEPE K C L G K I 1 0 0 1 1 0 0 1 0 0 1 1 0 1 1 0 0 0 2 0 0 0 10 0 1232.5536 P25311 P25311 225 234 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 0.017414 84.476 By MS/MS 9 0 1 1 5052200 5052200 0 0 1540 656 1612 6788 5657 5657 1 2835900 0 0 CLHPLANETFVAK YKNRFWHDTCFRCAKCLHPLANETFVAKDN AKCLHPLANETFVAKDNKILCNKCTTREDS K C L A K D 2 0 1 0 1 0 1 0 1 0 2 1 0 1 1 0 1 0 0 1 0 0 13 0 1498.7602 Q13642 Q13642 71 83 FHL1 Four and a half LIM domains protein 1 yes yes 2;3 0.00028336 145.28 By MS/MS 6 0 2 2 43418000 0 0 43418000 1541 1265 1613 6789;6790 5658;5659 5658 2 0 0 6495800 CLTALQGLYYNK VGWTMHDKQGEVRLKCLTALQGLYYNKELN RLKCLTALQGLYYNKELNSKLELFTSRFKD K C L N K E 1 0 1 0 1 1 0 1 0 0 3 1 0 0 0 0 1 0 2 0 0 0 12 0 1442.7228 Q8N3U4 Q8N3U4 347 358 STAG2 Cohesin subunit SA-2 yes yes 2 0.068036 68.371 By MS/MS 1.5 0.5 1 1 2 6855100 0 0 6855100 1542 1603 1614 6791;6792 5660 5660 1 0 0 1509600 CMQLTDFILK DGPCTQVRRQAMPFKCMQLTDFILKFPHSA AMPFKCMQLTDFILKFPHSAHQKYVRQAWQ K C M L K F 0 0 0 1 1 1 0 0 0 1 2 1 1 1 0 0 1 0 0 0 0 0 10 0 1267.6305 P50914 P50914 54 63 RPL14 60S ribosomal protein L14 yes yes 2 0.00023946 122.52 By matching By MS/MS 6.67 0.471 1 2 1 2 36079000 0 1155000 34924000 1543 884 1615 6793;6794;6795 5661;5662 5662 2 0 663220 5844400 CNEIINWLDK QGKINDEDKQKILDKCNEIINWLDKNQTAE KILDKCNEIINWLDKNQTAEKEEFEHQQKE K C N D K N 0 0 2 1 1 0 1 0 0 2 1 1 0 0 0 0 0 1 0 0 0 0 10 0 1303.6231 P11142 P11142 574 583 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 0.0079314 91.584 By MS/MS 3 0 1 1 2822000 0 0 2822000 1544 517 1616 6796 5663 5663 1 0 0 547330 CNNVLYIR IDGALSGHLGEVLIRCNNVLYIRGVEEEEE LGEVLIRCNNVLYIRGVEEEEEDGEMRE__ R C N I R G 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1050.528 P62306 P62306 66 73 SNRPF Small nuclear ribonucleoprotein F yes yes 2 8.2102E-06 154.09 By matching By MS/MS 10 0 2 1 1 34257000 0 1654100 32603000 1545 1019 1617 6797;6798 5664 5664 1 0 8368300 71305000 CPQVVISFYEER SDEADLVPAKEANVKCPQVVISFYEERLTW NVKCPQVVISFYEERLTWHSYPSEDDDKKD K C P E R L 0 1 0 0 1 1 2 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 12 0 1525.7235 P83916 P83916 156 167 CBX1 Chromobox protein homolog 1 yes yes 2 0.0012132 115.78 By MS/MS 7 0 1 1 4337900 0 0 4337900 1546 1109 1618 6799 5665 5665 1 0 0 769730 CSEGSFLLTTFPR VEFSGKPAARKALDRCSEGSFLLTTFPRPV DRCSEGSFLLTTFPRPVTVEPMDQLDDEEG R C S P R P 0 1 0 0 1 0 1 1 0 0 2 0 0 2 1 2 2 0 0 0 0 0 13 0 1513.7235 Q15233 Q15233 208 220 NONO Non-POU domain-containing octamer-binding protein yes yes 2 4.1258E-58 236.35 By matching By MS/MS 3.67 0.471 1 2 1 2 65026000 3453000 0 61573000 1547 1351 1619 6800;6801;6802 5666;5667 5667 2 2694000 0 10439000 CSEGVFLLTTTPR VEFASKPAARKAFERCSEGVFLLTTTPRPV ERCSEGVFLLTTTPRPVIVEPLEQLDDEDG R C S P R P 0 1 0 0 1 0 1 1 0 0 2 0 0 1 1 1 3 0 0 1 0 0 13 0 1479.7392 P23246 P23246 431 443 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 2.8822E-11 177.44 By MS/MS 2 0 1 1 14478000 0 0 14478000 1548 638 1620 6803 5668 5668 1 0 0 3271800 CSMINMWPGVLGMDGVVIMNVR GAEVEIDTEDRVAFRCSMINMWPGVLGMDG PGVLGMDGVVIMNVRFTGPNFSGTVFLANT R C S V R F 0 1 2 1 1 0 0 3 0 2 1 0 4 0 1 1 0 1 0 4 0 0 22 0 2478.1714 P03243;P03244 P03243 219 240 yes no 3 0.017227 35.703 By MS/MS 1 0 1 1 1627700 0 0 1627700 1549 406 1621 6804 5669 5669 1 0 0 350710 CSTSSLLEACTFR YLGEEYVKAVGNLRKCSTSSLLEACTFRRP RKCSTSSLLEACTFRRP_____________ K C S F R R 1 1 0 0 2 0 1 0 0 0 2 0 0 1 0 3 2 0 0 0 0 0 13 0 1530.6807 P02787 P02787 684 696 TF Serotransferrin yes yes 2 2.6498E-72 244.24 By MS/MS 9 0 1 1 7305800 7305800 0 0 1550 399 1622 6805 5670 5670 1 4100800 0 0 CTLGILSEGNSR RPKSRASIKKCLFERCTLGILSEGNSRVRH FERCTLGILSEGNSRVRHNVASDCGCFMLV R C T S R V 0 1 1 0 1 0 1 2 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1305.6347 P03243;P03244 P03243 310 321 yes no 2 3.1617E-08 170.47 By MS/MS By MS/MS 3.17 1.34 1 1 1 2 1 2 4 60024000 0 10423000 49600000 1551 406 1623 6806;6807;6808;6809;6810;6811 5671;5672;5673;5674;5675 5672 4 0 3167700 9935900 DAAFEALGTALK AALLKHINDSAPEVRDAAFEALGTALKVVG EVRDAAFEALGTALKVVGEKAVNPFLADVD R D A L K V 4 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1205.6292 Q14008 Q14008 457 468 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00015062 135.86 By matching By MS/MS By MS/MS 1.71 0.7 3 3 1 2 2 3 150690000 3081200 45862000 101750000 1552 1279 1624 6812;6813;6814;6815;6816;6817;6818 5676;5677;5678;5679;5680 5679 5 3388800 21572000 22049000 DAALATALGDK AQIKLREYEAALNSKDAALATALGDKKSLE LNSKDAALATALGDKKSLEGDLEDLKDQIA K D A D K K 4 0 0 2 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1044.5451 P20700 P20700 146 156 LMNB1 Lamin-B1 yes yes 2 0.00032741 123.75 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 2 3 179010000 0 24341000 154670000 1553 619 1625 6819;6820;6821;6822;6823 5681;5682 5681 1 0 10420000 29077000 DAALATALGDKK AQIKLREYEAALNSKDAALATALGDKKSLE NSKDAALATALGDKKSLEGDLEDLKDQIAQ K D A K K S 4 0 0 2 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 12 1 1172.6401 P20700 P20700 146 157 LMNB1 Lamin-B1 yes yes 2 0.00010776 143.89 By MS/MS By MS/MS 3.92 2.3 2 2 3 1 2 1 1 1 5 8 1230200000 0 318450000 911720000 1554 619 1626 6824;6825;6826;6827;6828;6829;6830;6831;6832;6833;6834;6835;6836 5683;5684;5685;5686;5687;5688;5689;5690;5691;5692;5693 5689 11 0 135710000 171530000 DAASLESQLQDTQELLQEETR TLLEEAEKKGIKFAKDAASLESQLQDTQEL SQLQDTQELLQEETRQKLNLSSRIRQLEEE K D A T R Q 2 1 0 2 0 4 4 0 0 0 4 0 0 0 0 2 2 0 0 0 0 0 21 0 2403.1401 P35580 P35580 1309 1329 MYH10 Myosin-10 yes yes 2;3 0 375.66 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 56612000 0 26946000 29666000 1555 753 1627 6837;6838;6839;6840;6841;6842 5694;5695;5696;5697;5698;5699 5699 6 0 13067000 6404100 DAASVDKVLELK PVTGRSRGFGFVLFKDAASVDKVLELKEHK LFKDAASVDKVLELKEHKLDGKLIDPKRAK K D A L K E 2 0 0 2 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 2 0 0 12 1 1286.7082 O14979 O14979 198 209 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 0.0073152 118.77 By MS/MS 6 0 1 1 18208000 0 18208000 0 1556 157 1628 6843 5700 5700 1 0 6302800 0 DAATDVASR SICLSILDRSLNFRRDAATDVASRNDPKYV SLNFRRDAATDVASRNDPKYVGRVLSAMIN R D A S R N 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 9 0 904.42502 Q08188 Q08188 202 210 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.025722 78.516 By MS/MS 10 0 1 1 1345800 1345800 0 0 1557 1181 1629 6844 5701 5701 1 2451800 0 0 DAATIMQPYFTSNGLVTK DEGEEAASPMLQIQRDAATIMQPYFTSNGL TIMQPYFTSNGLVTKALEHAFQLEHIMDLT R D A T K A 2 0 1 1 0 1 0 1 0 1 1 1 1 1 1 1 3 0 1 1 0 0 18 0 1955.9663 Q14204 Q14204 2418 2435 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.926E-10 162.32 By MS/MS 1 0 1 1 2236600 0 2236600 0 1558 1292 1630 6845 5702 5702 1 0 1093200 0 DADDAVYELNGK DLKNGYGFVEFEDSRDADDAVYELNGKELC DSRDADDAVYELNGKELCGERVIVEHARGP R D A G K E 2 0 1 3 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1308.5834 Q13247;Q08170 Q13247 47 58 SRSF6;SRSF4 Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4 yes no 2 0.00076739 120.76 By MS/MS 5 0 1 1 2900600 0 2900600 0 1559 1234 1631 6846 5703 5703 1 0 747690 0 DADETKEWIEEK SQLLGSAHEVQRFHRDADETKEWIEEKNQA FHRDADETKEWIEEKNQALNTDNYGHDLAS R D A E K N 1 0 0 2 0 0 4 0 0 1 0 2 0 0 0 0 1 1 0 0 0 0 12 1 1491.6729 Q13813 Q13813 1241 1252 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 9.5874E-34 211.64 By MS/MS 1.5 0.5 1 1 2 31138000 0 0 31138000 1560 1268 1632 6847;6848 5704 5704 1 0 0 6734300 DADPILISLR GPEAALEAEEWVSGRDADPILISLREAYVP WVSGRDADPILISLREAYVPSKQRDLKISR R D A L R E 1 1 0 2 0 0 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1111.6237 Q9BR76 Q9BR76 384 393 CORO1B Coronin-1B yes yes 2 0.0033074 102.62 By MS/MS By MS/MS 4 0 2 1 1 16281000 0 7844600 8436800 1561 1887 1633 6849;6850 5705;5706 5706 2 0 2603300 1378000 DADSQNPDAPEGK SNLENSTYDLYTIPKDADSQNPDAPEGKRS PKDADSQNPDAPEGKRSSGLTAVWVARNRF K D A G K R 2 0 1 3 0 1 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 13 0 1342.5637 P53621 P53621 399 411 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.01787 79.974 By MS/MS 2 0 1 1 1677500 0 1677500 0 1562 922 1634 6851 5707 5707 1 0 755420 0 DADSQNPDAPEGKR SNLENSTYDLYTIPKDADSQNPDAPEGKRS KDADSQNPDAPEGKRSSGLTAVWVARNRFA K D A K R S 2 1 1 3 0 1 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 14 1 1498.6648 P53621 P53621 399 412 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.06361 36.022 By MS/MS 2 0 1 1 1017500 0 1017500 0 1563 922 1635 6852 5708 5708 1 0 458170 0 DADSSISVLEIHSQK MKTGELEKETAPLRKDADSSISVLEIHSQK DADSSISVLEIHSQKAQIEEPDPPEMETSL K D A Q K A 1 0 0 2 0 1 1 0 1 2 1 1 0 0 0 4 0 0 0 1 0 0 15 0 1627.8053 Q96T23 Q96T23 512 526 RSF1 Remodeling and spacing factor 1 yes yes 2;3 6.157E-09 155.15 By MS/MS By MS/MS 1.5 0.764 4 1 1 1 5 80945000 0 0 80945000 1564 1837 1636 6853;6854;6855;6856;6857;6858 5709;5710;5711;5712 5709 4 0 0 17448000 DAEAWFNEK NMRSQYEQLAEQNRKDAEAWFNEKSKELTT AEQNRKDAEAWFNEKSKELTTEIDNNIEQI K D A E K S 2 0 1 1 0 0 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1108.4825 P13645;CON__P13645;Q7Z3Y7;CON__Q7Z3Y7;CON__Q148H6;Q7Z3Y8;CON__Q7Z3Y8;CON__Q7Z3Z0;Q7Z3Z0 P13645 335 343 KRT10;KRT28;KRT27;KRT25 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25 yes no 1;2 4.7861E-09 162.25 By MS/MS By MS/MS By MS/MS 5.41 2.93 3 3 3 3 4 2 3 2 2 4 10 7 12 6407600000 5036700000 108530000 1262300000 + 1565 56 1637 6859;6860;6861;6862;6863;6864;6865;6866;6867;6868;6869;6870;6871;6872;6873;6874;6875;6876;6877;6878;6879;6880;6881;6882;6883;6884;6885;6886;6887 5713;5714;5715;5716;5717;5718;5719;5720;5721;5722;5723;5724;5725;5726;5727;5728;5729;5730;5731;5732;5733;5734;5735;5736;5737;5738;5739;5740;5741;5742;5743;5744;5745;5746;5747;5748;5749 5747 33 4328700000 69571000 384400000 DAEAWFTSR DMRSQYEVMAEQNRKDAEAWFTSRTEELNR AEQNRKDAEAWFTSRTEELNREVAGHTEQL K D A S R T 2 1 0 1 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 9 0 1081.4829 CON__P08727;P08727 CON__P08727 266 274 KRT19 Keratin, type I cytoskeletal 19 yes no 2 4.4686E-07 155.1 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 79826000 0 9892900 69933000 + 1566 51 1638 6888;6889;6890 5750;5751 5751 2 0 2550100 9781400 DAEDAIYGR HGLVPFAFVRFEDPRDAEDAIYGRNGYDYG RFEDPRDAEDAIYGRNGYDYGQCRLRVEFP R D A G R N 2 1 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1008.4512 Q13242 Q13242 64 72 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 4.8973E-24 194.27 By matching By MS/MS 6.67 0.471 1 2 1 2 88234000 0 5830800 82403000 1567 1232 1639 6891;6892;6893 5752;5753 5753 2 0 3348100 14300000 DAEDALHNLDR RRPRGFAYVQFEDVRDAEDALHNLDRKWIC EDVRDAEDALHNLDRKWICGRQIEIQFAQG R D A D R K 2 1 1 3 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1267.5793 O75494 O75494 63 73 SRSF10 Serine/arginine-rich splicing factor 10 yes yes 2;3 3.4702E-36 215.06 By matching By matching By MS/MS 6 1 1 1 3 3 1 3 4 171760000 1298100 3491800 166970000 1568 267 1640 6894;6895;6896;6897;6898;6899;6900;6901 5754;5755;5756;5757 5757 4 1012800 1303400 28336000 DAEDAMDAMDGAVLDGR KESRGFAFVRFHDKRDAEDAMDAMDGAVLD EDAMDAMDGAVLDGRELRVQMARYGRPPDS R D A G R E 4 1 0 5 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 17 0 1750.7138 Q01130 Q01130 67 83 SRSF2 Serine/arginine-rich splicing factor 2 yes yes 2;3 2.6196E-27 201.38 By MS/MS By MS/MS 5.08 2.06 1 1 1 1 2 5 1 1 2 11 114990000 0 17993000 96997000 1569 1131 1641 6902;6903;6904;6905;6906;6907;6908;6909;6910;6911;6912;6913;6914 5758;5759;5760;5761;5762;5763;5764;5765 5762 8 0 6228400 16001000 DAEDAVYGR RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R D A G R D 2 1 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 9 0 994.43559 Q07955 Q07955 66 74 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 0.00036913 121.31 By matching By MS/MS 6.33 0.471 2 1 1 2 132160000 0 11352000 120810000 1570 1179 1642 6915;6916;6917 5766 5766 1 0 3929600 18250000 DAEDAVYGRDGYDYDGYR RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG R D A Y R L 2 2 0 5 0 0 1 3 0 0 0 0 0 0 0 0 0 0 4 1 0 0 18 1 2098.8504 Q07955 Q07955 66 83 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 1.1984E-06 109.6 By MS/MS 6 0 1 1 3428500 0 0 3428500 1571 1179 1643 6918 5767 5767 0 0 0 512940 DAEDWFFSK EMRDQYEKMAEKNRKDAEDWFFSKTEELNR AEKNRKDAEDWFFSKTEELNREVATNSELV K D A S K T 1 0 0 2 0 0 1 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 9 0 1143.4873 Q04695;CON__Q04695 Q04695 270 278 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.0024174 104.06 By MS/MS By MS/MS 4.22 2.62 2 1 1 1 1 1 1 1 2 7 129470000 4317500 0 125150000 + 1572 73 1644 6919;6920;6921;6922;6923;6924;6925;6926;6927 5768;5769;5770;5771;5772;5773 5773 6 2834700 0 19395000 DAEEWFFTK EMRDQYEKMAEKNRKDAEEWFFTKTEELNR AEKNRKDAEEWFFTKTEELNREVATNSELV K D A T K T 1 0 0 1 0 0 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 9 0 1171.5186 CON__P02533;P02533;CON__Q6IFX2 CON__P02533 301 309 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.00037457 137.9 By MS/MS By MS/MS By MS/MS 5.25 2.86 2 1 2 2 2 2 1 1 1 2 8 1 7 322580000 245670000 3823100 73079000 + 1573 35;91 1645 6928;6929;6930;6931;6932;6933;6934;6935;6936;6937;6938;6939;6940;6941;6942;6943 5774;5775;5776;5777;5778;5779;5780;5781;5782;5783;5784;5785;5786;5787;5788 5776 15 205660000 1868700 13318000 DAEEWFHAK EMREQYEAMAERNRRDAEEWFHAKSAELNK AERNRRDAEEWFHAKSAELNKEVSTNTAMI R D A A K S 2 0 0 1 0 0 2 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 9 0 1131.4985 CON__P13646-1 CON__P13646-1 291 299 yes yes 2 0.00042633 107.66 By MS/MS 1 0 1 1 0 0 0 0 + 1574 57 1646 6944 5789 5789 1 0 0 0 DAELVDKSETDLRR KKFGGPLERLDAIARDAELVDKSETDLRRL RDAELVDKSETDLRRLGELVHNGCIKALKD R D A R R L 1 2 0 3 0 0 2 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 14 2 1645.8271 O14646 O14646 1154 1167 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0001206 128.54 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 34416000 0 11739000 22677000 1575 141 1647 6945;6946;6947 5790;5791 5790 2 0 5738100 4906300 DAETWFLSK EMRDQYEQMAEKNRRDAETWFLSKTEELNK AEKNRRDAETWFLSKTEELNKEVASNSELV R D A S K T 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 1 0 0 0 0 9 0 1095.5237 CON__P08779;P08779 CON__P08779 303 311 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.0023273 104.44 By MS/MS By MS/MS By MS/MS 4.58 3.12 3 2 1 1 2 1 1 1 8 1 3 180680000 158570000 1617000 20499000 + 1576 53 1648 6948;6949;6950;6951;6952;6953;6954;6955;6956;6957;6958;6959 5792;5793;5794;5795;5796;5797;5798;5799;5800;5801 5796 10 122690000 790380 4190900 DAFADAVQR GPSQPPGGGGPGIRKDAFADAVQRARQIAA GPGIRKDAFADAVQRARQIAAKIGGDAATT K D A Q R A 3 1 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 9 0 991.47231 Q92945 Q92945 72 80 KHSRP Far upstream element-binding protein 2 yes yes 2 0.0087301 90.37 By MS/MS 2.5 0.5 1 1 2 9794000 0 9794000 0 1577 1733 1649 6960;6961 5802 5802 1 0 4336300 0 DAFLGSFLYEYSR FAEDKDVCKNYQEAKDAFLGSFLYEYSRRH AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK K D A S R R 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 2 0 0 2 0 0 0 13 0 1566.7355 CON__P02769 CON__P02769 347 359 yes yes 2 7.6045E-45 220.82 By MS/MS By MS/MS By MS/MS 4.2 2.23 2 2 2 3 2 1 1 2 6 4 5 169380000 92365000 16438000 60573000 + 1578 45 1650 6962;6963;6964;6965;6966;6967;6968;6969;6970;6971;6972;6973;6974;6975;6976 5803;5804;5805;5806;5807;5808;5809;5810;5811;5812 5803 10 78784000 5736000 10898000 DAFSLAEGLR LELLTIFAWEQGCKKDAFSLAEGLRTVLGL QGCKKDAFSLAEGLRTVLGLIQQHQHLCVF K D A L R T 2 1 0 1 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 10 0 1077.5455 Q9Y6K5 Q9Y6K5 244 253 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 3.2704E-07 160.11 By MS/MS 2 0 1 1 2714200 0 2714200 0 1579 2314 1651 6977 5813 5813 1 0 1222200 0 DAGEGGLSLAIEGPSK HGVVNKPATFTVNTKDAGEGGLSLAIEGPS AGEGGLSLAIEGPSKAEISCTDNQDGTCSV K D A S K A 2 0 0 1 0 0 2 4 0 1 2 1 0 0 1 2 0 0 0 0 0 0 16 0 1499.7468 P21333 P21333 1892 1907 FLNA Filamin-A yes yes 2 6.0625E-06 158.2 By MS/MS 1 0 1 1 10253000 0 10253000 0 1580 623 1652 6978 5814;5815 5814 2 0 5011300 0 DAGEGGLSLAVEGPSK HGMVNKPATFTIVTKDAGEGGLSLAVEGPS AGEGGLSLAVEGPSKAEITCKDNKDGTCTV K D A S K A 2 0 0 1 0 0 2 4 0 0 2 1 0 0 1 2 0 0 0 1 0 0 16 0 1485.7311 Q14315 Q14315 1886 1901 FLNC Filamin-C yes yes 2 1.739E-06 162.32 By matching By MS/MS 1.33 0.471 2 1 1 2 13741000 2471900 11269000 0 1581 1298 1653 6979;6980;6981 5816 5816 1 2471900 5395700 0 DAGEGLLAVQITDPEGKPK GVPASLPVEFTIDAKDAGEGLLAVQITDPE GLLAVQITDPEGKPKKTHIQDNHDGTYTVA K D A P K K 2 0 0 2 0 1 2 3 0 1 2 2 0 0 2 0 1 0 0 1 0 0 19 1 1937.0106 P21333 P21333 1574 1592 FLNA Filamin-A yes yes 2;3 7.8483E-12 170.79 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 22869000 0 12396000 10473000 1582 623 1654 6982;6983;6984;6985 5817;5818;5819 5819 3 0 6059000 2271500 DAGEGLLTVQILDPEGKPK GIPASLPVEFTIDARDAGEGLLTVQILDPE GLLTVQILDPEGKPKKANIRDNGDGTYTVS R D A P K K 1 0 0 2 0 1 2 3 0 1 3 2 0 0 2 0 1 0 0 1 0 0 19 1 1979.0575 Q14315 Q14315 1568 1586 FLNC Filamin-C yes yes 3 0.0034943 57.482 By MS/MS 1 0 1 1 3903000 0 3903000 0 1583 1298 1655 6986 5820 5820 1 0 1907700 0 DAGIEPGPDTYLALLNAYAEK AGDMENAENILTVMRDAGIEPGPDTYLALL GPDTYLALLNAYAEKGDIDHVKQTLEKVEK R D A E K G 4 0 1 2 0 0 2 2 0 1 3 1 0 0 2 0 1 0 2 0 0 0 21 0 2220.095 P42704 P42704 260 280 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.00016973 70.99 By MS/MS 2 0 1 1 663010 0 0 663010 1584 808 1656 6987 5821 5821 1 0 0 149830 DAGQISGLNVLR TVPAYFNDSQRQATKDAGQISGLNVLRVIN ATKDAGQISGLNVLRVINEPTAAALAYGLD K D A L R V 1 1 1 1 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1241.6728 P38646 P38646 207 218 HSPA9 Stress-70 protein, mitochondrial yes yes 2 1.5271E-05 154.81 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 63684000 0 41589000 22095000 1585 774 1657 6988;6989;6990;6991 5822;5823;5824 5823 3 0 17787000 4228000 DAGTIAGLNVLR TVPAYFNDSQRQATKDAGTIAGLNVLRIIN ATKDAGTIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 1 0 0 12 0 1198.667 P11142 P11142 160 171 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 1.5978E-09 174.41 By MS/MS By MS/MS By MS/MS 5.37 2.7 1 2 4 1 1 3 3 1 1 2 3 8 8 986740000 39064000 464380000 483290000 1586 517 1658 6992;6993;6994;6995;6996;6997;6998;6999;7000;7001;7002;7003;7004;7005;7006;7007;7008;7009;7010 5825;5826;5827;5828;5829;5830;5831;5832;5833;5834;5835;5836;5837;5838;5839;5840;5841 5828 17 47684000 209330000 98376000 DAGTIAGLNVMR TVPAYFNDAQRQATKDAGTIAGLNVMRIIN ATKDAGTIAGLNVMRIINEPTAAAIAYGLD K D A M R I 2 1 1 1 0 0 0 2 0 1 1 0 1 0 0 0 1 0 0 1 0 0 12 0 1216.6234 P11021 P11021 186 197 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.00062747 123.21 By MS/MS By matching 4.75 1.48 1 1 1 1 2 2 62222000 0 57340000 4881500 1587 516 1659 7011;7012;7013;7014 5842 5842 1 0 24229000 772830 DAGVIAGLNVLR TVPAYFNDSQRQATKDAGVIAGLNVLRIIN ATKDAGVIAGLNVLRIINEPTAAAIAYGLD K D A L R I 2 1 1 1 0 0 0 2 0 1 2 0 0 0 0 0 0 0 0 2 0 0 12 0 1196.6877 P0DMV9;P0DMV8 P0DMV9 160 171 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 3.664E-06 161.79 By matching By MS/MS By MS/MS 6 2.37 3 1 2 2 1 1 1 1 5 5 480410000 38960000 216410000 225040000 1588 501 1660 7015;7016;7017;7018;7019;7020;7021;7022;7023;7024;7025 5843;5844;5845;5846;5847;5848;5849;5850 5845 8 44951000 89998000 49365000 DAGYGGISLAVEGPSK EGRTFEMSDFIVDTRDAGYGGISLAVEGPS AGYGGISLAVEGPSKVDIQTEDLEDGTCKV R D A S K V 2 0 0 1 0 0 1 4 0 1 1 1 0 0 1 2 0 0 1 1 0 0 16 0 1519.7518 O75369 O75369 2029 2044 FLNB Filamin-B yes yes 2 3.5565E-05 123.64 By MS/MS 1 0 1 1 2718400 0 2718400 0 1589 254 1661 7026 5851 5851 1 0 1328700 0 DAGYGGLSLSIEGPSK EGHTFEPAEFIIDTRDAGYGGLSLSIEGPS AGYGGLSLSIEGPSKVDINTEDLEDGTCRV R D A S K V 1 0 0 1 0 0 1 4 0 1 2 1 0 0 1 3 0 0 1 0 0 0 16 0 1549.7624 P21333 P21333 2074 2089 FLNA Filamin-A yes yes 2 4.3293E-05 117.03 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 12376000 0 7472500 4903800 1590 623 1662 7027;7028;7029 5852;5853 5852 2 0 3601600 1056600 DAHSIHGTNPQYLVEK ______________________________ AHSIHGTNPQYLVEKIIRTRIYESKYWKEE K D A E K I 1 0 1 1 0 1 1 1 2 1 1 1 0 0 1 1 1 0 1 1 0 0 16 0 1807.8853 Q8NAV1 Q8NAV1 8 23 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2;3 1.1787E-12 179.67 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 63967000 0 19369000 44597000 1591 1622 1663 7030;7031;7032;7033 5854;5855;5856 5856 2 0 5575100 6220500 DAIGISLLK YVSGDQKEIISYDVKDAIGISLLKKSGIEV ISYDVKDAIGISLLKKSGIEVRLISERACS K D A L K K 1 0 0 1 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 9 0 928.55933 Q8NFW8 Q8NFW8 307 315 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.061376 68.224 By MS/MS 5 0 1 1 6774400 0 6774400 0 1592 1644 1664 7034 5857 5857 1 0 1746200 0 DAIPENLPPLTADFAEDK KPLLEKSHCIAEVEKDAIPENLPPLTADFA PENLPPLTADFAEDKDVCKNYQEAKDAFLG K D A D K D 3 0 1 3 0 0 2 0 0 1 2 1 0 1 3 0 1 0 0 0 0 0 18 0 1954.9524 CON__P02769 CON__P02769 319 336 yes yes 2;3 1.834E-08 140.1 By MS/MS 4.29 1.03 2 2 2 1 7 83834000 83834000 0 0 + 1593 45 1665 7035;7036;7037;7038;7039;7040;7041 5858;5859;5860;5861;5862;5863 5863 6 79063000 0 0 DAIPENLPPLTADFAEDKDVCK KPLLEKSHCIAEVEKDAIPENLPPLTADFA PPLTADFAEDKDVCKNYQEAKDAFLGSFLY K D A C K N 3 0 1 4 1 0 2 0 0 1 2 2 0 1 3 0 1 0 0 1 0 0 22 1 2457.1734 CON__P02769 CON__P02769 319 340 yes yes 3 4.2385E-07 85.35 By MS/MS 5 0.816 1 1 1 3 29438000 29438000 0 0 + 1594 45 1666 7042;7043;7044 5864;5865;5866 5866 3 24009000 0 0 DAITQALFLR DVINESGLYRLKGHKDAITQALFLREKNLL LKGHKDAITQALFLREKNLLVTSGKDTMVK K D A L R E 2 1 0 1 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1146.6397 Q9UNX4 Q9UNX4 150 159 WDR3 WD repeat-containing protein 3 yes yes 2 2.1839E-16 178.83 By matching By MS/MS By MS/MS 3.75 2.33 1 3 1 1 2 1 3 4 26360000 1902900 12422000 12036000 1595 2212 1667 7045;7046;7047;7048;7049;7050;7051;7052 5867;5868;5869;5870;5871 5868 5 2292700 5767600 2308000 DAKDKLESEMEDAYHEHQANLLR EMEKQQREQVEKNMKDAKDKLESEMEDAYH EMEDAYHEHQANLLRQDLMRRQEELRRMEE K D A L R Q 3 1 1 3 0 1 4 0 2 0 3 2 1 0 0 1 0 0 1 0 0 0 23 2 2741.2715 P23246 P23246 514 536 SFPQ Splicing factor, proline- and glutamine-rich yes yes 4 8.5075E-20 126.31 By MS/MS 2 0 1 1 8401000 0 8401000 0 1596 638 1668 7053 5872 5872 1 0 3783100 0 DALLLWCQMK ISVETEDNKEKKSAKDALLLWCQMKTAGYP KKSAKDALLLWCQMKTAGYPNVNIHNFTTS K D A M K T 1 0 0 1 1 1 0 0 0 0 3 1 1 0 0 0 0 1 0 0 0 0 10 0 1276.6308 Q01082;P11277;O15020 Q01082 177 186 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 no no 2 0.0070794 93.429 By MS/MS 1 0 1 1 4657300 0 0 4657300 1597 1128;160 1669 7054 5873 5873 1 0 0 1003500 DALNIETAIK AYGSVKAYTNFDAERDALNIETAIKTKGVD FDAERDALNIETAIKTKGVDEVTIVNILTN R D A I K T 2 0 1 1 0 0 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1086.5921 P07355;A6NMY6 P07355 38 47 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 0.002475 105.52 By MS/MS By MS/MS By MS/MS 8.2 1.83 2 1 2 2 1 2 94828000 12917000 18224000 63688000 1598 459 1670 7055;7056;7057;7058;7059 5874;5875;5876 5876 3 11061000 6308500 17188000 DALNQATSQVESK NTQLARLQQENSILRDALNQATSQVESKQN LRDALNQATSQVESKQNAELAKLRQELSKV R D A S K Q 2 0 1 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 0 1 0 0 13 0 1389.6736 Q9P2E9 Q9P2E9 807 819 RRBP1 Ribosome-binding protein 1 yes yes 2 3.1405E-05 160.36 By MS/MS 1 0 1 1 21863000 0 0 21863000 1599 2122 1671 7060 5877 5877 1 0 0 4710800 DALPELLGLEAGSR RRRATVVVGDLHPLRDALPELLGLEAGSRR RDALPELLGLEAGSRRQARSRESNKPRPSE R D A S R R 2 1 0 1 0 0 2 2 0 0 4 0 0 0 1 1 0 0 0 0 0 0 14 0 1439.762 Q9NSI2 Q9NSI2 149 162 FAM207A Protein FAM207A yes yes 2 0.010715 80.014 By MS/MS 6.5 0.5 1 1 2 4698300 0 0 4698300 1600 2052 1672 7061;7062 5878 5878 1 0 0 749470 DALRPPLQNINSVQLK DEAKLIAVEIYRWIRDALRPPLQNINSVQL ALRPPLQNINSVQLKELEEEWVKLPTSAPR R D A L K E 1 1 2 1 0 2 0 0 0 1 3 1 0 0 2 1 0 0 0 1 0 0 16 1 1805.0159 Q14008 Q14008 197 212 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 6.9746E-05 155.39 By MS/MS By MS/MS 1.5 0.764 4 1 1 2 4 112500000 0 17368000 95132000 1601 1279 1673 7063;7064;7065;7066;7067;7068 5879;5880;5881;5882;5883 5881 5 0 8489200 20543000 DALSDLALHFLNK KTGCNVLLIQKSILRDALSDLALHFLNKMK LRDALSDLALHFLNKMKIMVIKDIEREDIE R D A N K M 2 0 1 2 0 0 0 0 1 0 4 1 0 1 0 1 0 0 0 0 0 0 13 0 1455.7722 P50991 P50991 307 319 CCT4 T-complex protein 1 subunit delta yes yes 2;3 0.00026504 132.22 By matching By MS/MS By MS/MS 4.56 1.17 1 5 1 1 1 1 2 6 59148000 2236400 23011000 33900000 1602 886 1674 7069;7070;7071;7072;7073;7074;7075;7076;7077 5884;5885;5886;5887;5888 5887 4 1744800 7636400 5644700 DALSSVQESQVAQQAR SFMQGYMKHATKTAKDALSSVQESQVAQQA ALSSVQESQVAQQARGWVTDGFSSLKDYWS K D A A R G 3 1 0 1 0 4 1 0 0 0 1 0 0 0 0 3 0 0 0 2 0 0 16 0 1715.8438 P02656 P02656 45 60 APOC3 Apolipoprotein C-III yes yes 2 8.9703E-19 192.3 By MS/MS By MS/MS By MS/MS 9.75 0.433 1 3 2 1 1 23682000 8931500 1944100 12806000 1603 392 1675 7078;7079;7080;7081 5889;5890;5891;5892 5889 4 9967200 9835700 28008000 DALVQPLTSQGVDGVQDVVALMDTYYLMK SSKRTVNMDYLSLLRDALVQPLTSQGVDGV VQDVVALMDTYYLMKEDFENIMEISSWGGK R D A M K E 2 0 0 4 0 3 0 2 0 0 4 1 2 0 1 1 2 0 2 5 0 0 29 0 3168.5723 P35251 P35251 1004 1032 RFC1 Replication factor C subunit 1 yes yes 3 0.00047592 43.801 By MS/MS 1.5 0.5 1 1 2 17358000 0 0 17358000 1604 746 1676 7082;7083 5893;5894 5894 2 0 0 3905400 DAMQYASESK WKQSVELCKKDSLYKDAMQYASESKDTELA DSLYKDAMQYASESKDTELAEELLQWFLQE K D A S K D 2 0 0 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 10 0 1128.4757 Q00610 Q00610 1536 1545 CLTC Clathrin heavy chain 1 yes yes 2 0.00059047 116.05 By MS/MS 1 0 1 1 7399500 0 0 7399500 1605 1125 1677 7084 5895 5895 1 0 0 1594300 DANGNSFATR NRERHPGSFDVVHVKDANGNSFATRLSNIF VVHVKDANGNSFATRLSNIFVIGKGNKPWI K D A T R L 2 1 2 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 10 0 1051.4683 P62701;Q8TD47;P22090 P62701 212 221 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 3.2254E-05 125.82 By MS/MS By MS/MS 6 0 2 1 1 6077300 0 6077300 0 1606 1029 1678 7085;7086 5896;5897 5897 2 0 2103800 0 DANLYISGLPR TIKVSYARPSSEVIKDANLYISGLPRTMTQ EVIKDANLYISGLPRTMTQKDVEDMFSRFG K D A P R T 1 1 1 1 0 0 0 1 0 1 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1217.6404 Q15717 Q15717 105 115 ELAVL1 ELAV-like protein 1 yes yes 2 1.9371E-05 150.08 By matching By MS/MS By MS/MS 6 1 1 3 2 1 3 2 283730000 17264000 144780000 121690000 1607 1380 1679 7087;7088;7089;7090;7091;7092 5898;5899;5900;5901;5902 5902 5 22987000 51294000 18443000 DANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSR ADQMFFHSDYRPLIRDANNFVLDEQTQQAP PPFLVDVDGNPHPSRYQRLVPGRENCREEQ R D A S R Y 2 1 3 4 0 3 1 1 2 0 3 0 1 2 6 1 1 0 0 3 0 0 34 0 3794.8111 Q8WWQ0 Q8WWQ0 568 601 PHIP PH-interacting protein yes yes 4 8.8129E-08 55.871 By MS/MS 1 0 1 1 10015000 0 0 10015000 1608 1690 1680 7093 5903 5903 1 0 0 2157800 DANNGNLQLR ILFKEKAKEALGKAKDANNGNLQLRNKEVT LGKAKDANNGNLQLRNKEVTWEVLEGEVEK K D A L R N 1 1 3 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1113.5527 P05455 P05455 288 297 SSB Lupus La protein yes yes 2 0.002235 106.36 By MS/MS 5 0 1 1 2262000 0 2262000 0 1609 434 1681 7094 5904 5904 1 0 583070 0 DAPAESVAYHAQNNPPVPPKPQPK SHTNIHLLVTTYNLRDAPAESVAYHAQNNP HAQNNPPVPPKPQPKVQEKADIPVKSSPQA R D A P K V 4 0 2 1 0 2 1 0 1 0 0 2 0 0 7 1 0 0 1 2 0 0 24 1 2551.2819 Q9H2P0 Q9H2P0 573 596 ADNP Activity-dependent neuroprotector homeobox protein yes yes 3 0.0014239 50.215 By MS/MS 1.5 0.5 1 1 2 8694200 0 0 8694200 1610 1975 1682 7095;7096 5905 5905 1 0 0 1925700 DAPPLLPSDTGQGYR GMHREVYALLYSDKKDAPPLLPSDTGQGYR DAPPLLPSDTGQGYRTVKAKLGSKKVRPWK K D A Y R T 1 1 0 2 0 1 0 2 0 0 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1585.7736 Q9NPF5 Q9NPF5 67 81 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 2 0.031447 61.235 By MS/MS 4 0 1 1 0 0 0 0 1611 2027 1683 7097 5906 5906 1 0 0 0 DAQEFAADVR DLSTVKRKMENRDYRDAQEFAADVRLMFSN NRDYRDAQEFAADVRLMFSNCYKYNPPDHD R D A V R L 3 1 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1120.5149 P25440 P25440 410 419 BRD2 Bromodomain-containing protein 2 yes yes 2 0.00049537 135.71 By MS/MS 1.5 0.5 1 1 2 23167000 0 0 23167000 1612 658 1684 7098;7099 5907 5907 1 0 0 5152400 DAQEMADSLGVR PQYAVILAFDVRIERDAQEMADSLGVRIFS IERDAQEMADSLGVRIFSAEIIYHLFDAFT R D A V R I 2 1 0 2 0 1 1 1 0 0 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1290.5874 O60841 O60841 1044 1055 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 1.6873E-34 209.6 By matching By MS/MS By MS/MS 1.6 0.49 2 3 1 2 2 46442000 1648100 11282000 33512000 1613 236 1685 7100;7101;7102;7103;7104 5908;5909;5910;5911 5910 4 1985800 5258600 7356700 DAQIAMMQQR LELELAENRKLLTEKDAQIAMMQQRIDRLA LLTEKDAQIAMMQQRIDRLALLNEKQAASP K D A Q R I 2 1 0 1 0 3 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 10 0 1190.5536 Q14980 Q14980 248 257 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 9.3168E-17 182.53 By matching By MS/MS By MS/MS 1 0 3 1 1 1 30949000 2181800 8566400 20201000 1614 1327 1686 7105;7106;7107 5912;5913 5913 2 2181800 4187100 4352600 DAQIFIQK EQRKRLCENIAGHLKDAQIFIQKKAVKNFT NIAGHLKDAQIFIQKKAVKNFTEVHPDYGS K D A Q K K 1 0 0 1 0 2 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 961.52328 P04040 P04040 469 476 CAT Catalase yes yes 2 0.0036154 104.45 By MS/MS By matching 7.4 3.38 1 1 1 2 4 1 12658000 10877000 0 1781000 1615 408 1687 7108;7109;7110;7111;7112 5914;5915;5916 5914 3 13274000 0 3895200 DASDDLDDLNFFNQK EDKDLEADEEDTRKKDASDDLDDLNFFNQK DASDDLDDLNFFNQKKKKKKTKKIFDIDEA K D A Q K K 1 0 2 5 0 1 0 0 0 0 2 1 0 2 0 1 0 0 0 0 0 0 15 0 1755.7588 P20042 P20042 65 79 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 7.8161E-12 181.87 By MS/MS 4.5 0.5 1 1 2 11968000 0 0 11968000 1616 613 1688 7113;7114 5917;5918 5917 2 0 0 1772000 DASGATFTWTPSSGK LGSEANLTCTLTGLRDASGATFTWTPSSGK DASGATFTWTPSSGKSAVEGPPERDLCGCY R D A G K S 2 0 0 1 0 0 0 2 0 0 0 1 0 1 1 3 3 1 0 0 0 0 15 0 1511.6892 P0DOX2;P01877 P0DOX2 256 270 IGHA2 Ig alpha-2 chain C region yes no 2 3.239E-07 164.81 By MS/MS 5.5 4.03 1 1 1 1 4 20491000 20491000 0 0 1617 503 1689 7115;7116;7117;7118 5919;5920;5921 5920 3 20045000 0 0 DASGVTFTWTPSSGK LGSEANLTCTLTGLRDASGVTFTWTPSSGK DASGVTFTWTPSSGKSAVQGPPERDLCGCY R D A G K S 1 0 0 1 0 0 0 2 0 0 0 1 0 1 1 3 3 1 0 1 0 0 15 0 1539.7205 P01876 P01876 154 168 IGHA1 Ig alpha-1 chain C region yes yes 2 3.0587E-58 228.83 By MS/MS By matching 3.8 3.19 1 1 2 1 4 1 40166000 37780000 0 2386300 1618 386 1690 7119;7120;7121;7122;7123 5922;5923;5924;5925 5922 4 51357000 0 462820 DASLMVTNDGATILK LGPKGMDKILLSSGRDASLMVTNDGATILK DASLMVTNDGATILKNIGVDNPAAKVLVDM R D A L K N 2 0 1 2 0 0 0 1 0 1 2 1 1 0 0 1 2 0 0 1 0 0 15 0 1547.7865 P78371 P78371 58 72 CCT2 T-complex protein 1 subunit beta yes yes 2 2.7996E-07 166.14 By matching By MS/MS 4 0 2 1 1 10687000 3660500 7026700 0 1619 1086 1691 7124;7125 5926 5926 1 2855800 2331900 0 DASSLYPGTETMGLR EKRGGKSDKQEESSRDASSLYPGTETMGLR DASSLYPGTETMGLRTCAGESKDYALHVGD R D A L R T 1 1 0 1 0 0 1 2 0 0 2 0 1 0 1 2 2 0 1 0 0 0 15 0 1596.7454 O95425 O95425 162 176 SVIL Supervillin yes yes 2 0.018723 69.261 By MS/MS By MS/MS 1 0 2 1 1 6376100 0 2631400 3744700 1620 325 1692 7126;7127 5927;5928 5927 2 0 1286200 806850 DASVAEAWLLGQEPYLSSR WEWLRLILEVHQFSRDASVAEAWLLGQEPY AEAWLLGQEPYLSSREIGQSVDEVEKLIKR R D A S R E 3 1 0 1 0 1 2 1 0 0 3 0 0 0 1 3 0 1 1 1 0 0 19 0 2091.0273 Q01082 Q01082 2025 2043 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 2.7192E-52 225.32 By MS/MS By MS/MS 1 0 3 1 2 25162000 0 3636800 21525000 1621 1128 1693 7128;7129;7130 5929;5930;5931 5930 3 0 1777600 4638000 DATGAEEEAPWAATER PVPPPGAQGVAELLRDATGAEEEAPWAATE ATGAEEEAPWAATERRMPGQCSVLLFPGQG R D A E R R 5 1 0 1 0 0 4 1 0 0 0 0 0 0 1 0 2 1 0 0 0 0 16 0 1702.7435 Q8IVS2 Q8IVS2 41 56 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 2 0.0023875 88.552 By matching By matching By MS/MS 4.33 0.471 2 1 1 1 1 12360000 3912100 2833100 5615400 1622 1571 1694 7131;7132;7133 5932 5932 1 3052100 940190 783240 DATMEVQR AAAAAAARRQEQTLRDATMEVQRGQFQGRP RQEQTLRDATMEVQRGQFQGRPVSVWDVLF R D A Q R G 1 1 0 1 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 8 0 948.43348 P58107 P58107 2642 2649 EPPK1 Epiplakin yes no 2 0.0036154 104.45 By MS/MS 1 0 1 1 7374600 0 7374600 0 1623 958 1695 7134 5933 5933 1 0 3604600 0 DATNVAAAFEEAVR CRDNGDYPYFETSAKDATNVAAAFEEAVRR KDATNVAAAFEEAVRRVLATEDRSDHLIQT K D A V R R 5 1 1 1 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 2 0 0 14 0 1462.7052 P51151 P51151 157 170 RAB9A Ras-related protein Rab-9A yes yes 2 0.0036984 93.166 By MS/MS 7 0 1 1 5409900 0 0 5409900 1624 891 1696 7135 5934 5934 1 0 0 959950 DATNVGDEGGFAPNILENK VYHNLKNVIKEKYGKDATNVGDEGGFAPNI VGDEGGFAPNILENKEGLELLKTAIGKAGY K D A N K E 2 0 3 2 0 0 2 3 0 1 1 1 0 1 1 0 1 0 0 1 0 0 19 0 1959.9174 P06733 P06733 203 221 ENO1 Alpha-enolase yes yes 2 9.5288E-52 218.68 By MS/MS By MS/MS 5.57 1.4 2 2 1 1 1 2 5 79793000 15608000 0 64185000 1625 448 1697 7136;7137;7138;7139;7140;7141;7142 5935;5936;5937;5938;5939;5940 5936 6 12362000 0 9750300 DAVEDLESVGK DGAKKAVGGLGKLGKDAVEDLESVGKGAVH KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ K D A G K G 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1160.5561 P81605 P81605 86 96 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 8.2243E-05 125.48 By MS/MS By MS/MS By MS/MS 5.83 3 3 2 1 2 2 2 2 3 4 2 14 1 8 4470100000 4016200000 26707000 427140000 1626 1094 1698 7143;7144;7145;7146;7147;7148;7149;7150;7151;7152;7153;7154;7155;7156;7157;7158;7159;7160;7161;7162;7163;7164;7165 5941;5942;5943;5944;5945;5946;5947;5948;5949;5950;5951;5952;5953;5954;5955;5956;5957;5958;5959;5960;5961;5962;5963;5964 5960 24 3613200000 13054000 412240000 DAVLLVFANK AREELMRMLAEDELRDAVLLVFANKQDLPN EDELRDAVLLVFANKQDLPNAMNAAEITDK R D A N K Q 2 0 1 1 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 2 0 0 10 0 1088.623 P84077;P61204;P84085 P84077 118 127 ARF1;ARF3;ARF5 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5 yes no 2 0.012518 87.251 By MS/MS 8.33 1.25 1 1 1 3 7694600 0 0 7694600 1627 984 1699 7166;7167;7168 5965 5965 1 0 0 3430200 DAVSGLAFR EAQSCQHLYTFTGHRDAVSGLAFRRGTHQL TFTGHRDAVSGLAFRRGTHQLYSTSHDRSV R D A F R R 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 934.48723 O43818 O43818 242 250 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 0.00051371 125.25 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 26824000 0 10556000 16267000 1628 214 1700 7169;7170;7171 5966;5967;5968 5966 3 0 3503300 2597900 DAVSNTTNQLESK EAEIAHLKQENGILRDAVSNTTNQLESKQS LRDAVSNTTNQLESKQSAELNKLRQDYARL R D A S K Q 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 2 2 0 0 1 0 0 13 0 1405.6685 Q86UP2 Q86UP2 431 443 KTN1 Kinectin yes yes 2 0.00012131 152.07 By MS/MS 1.5 0.5 1 1 2 14352000 0 0 14352000 1629 1549 1701 7172;7173 5969;5970 5969 2 0 0 3155700 DAVTYTEHAK ETRGVLKVFLENVIRDAVTYTEHAKRKTVT ENVIRDAVTYTEHAKRKTVTAMDVVYALKR R D A A K R 2 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 10 0 1133.5353 P62805 P62805 69 78 HIST1H4A Histone H4 yes yes 2 7.2839E-11 167.33 By MS/MS By MS/MS By MS/MS 6.58 3.18 4 1 1 1 1 2 2 3 7 4 5 10 11 3646700000 107110000 835610000 2704000000 1630 1033 1702 7174;7175;7176;7177;7178;7179;7180;7181;7182;7183;7184;7185;7186;7187;7188;7189;7190;7191;7192;7193;7194;7195;7196;7197;7198;7199 5971;5972;5973;5974;5975;5976;5977;5978;5979;5980;5981;5982;5983;5984;5985;5986;5987;5988;5989;5990;5991;5992;5993;5994;5995;5996;5997;5998;5999;6000;6001;6002;6003;6004;6005;6006;6007;6008;6009 5976 39 71271000 1084400000 1432600000 DAVTYTEHAKR ETRGVLKVFLENVIRDAVTYTEHAKRKTVT NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ R D A K R K 2 1 0 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 1 1 0 0 11 1 1289.6364 P62805 P62805 69 79 HIST1H4A Histone H4 yes yes 2;3 0.00010523 138.98 By MS/MS By MS/MS 8.89 0.875 1 1 5 2 3 6 193870000 0 57230000 136640000 1631 1033 1703 7200;7201;7202;7203;7204;7205;7206;7207;7208 6010;6011;6012;6013;6014;6015;6016;6017;6018;6019 6014 10 0 99732000 42348000 DAVTYTEHAKRK ETRGVLKVFLENVIRDAVTYTEHAKRKTVT VIRDAVTYTEHAKRKTVTAMDVVYALKRQG R D A R K T 2 1 0 1 0 0 1 0 1 0 0 2 0 0 0 0 2 0 1 1 0 0 12 2 1417.7314 P62805 P62805 69 80 HIST1H4A Histone H4 yes yes 3 0.042427 57.836 By MS/MS 9.5 0.5 1 1 2 679370 0 0 679370 1632 1033 1704 7209;7210 6020 6020 1 0 0 301840 DAYELEVLLR DGGGEATGSPLAQGKDAYELEVLLRVKESE LAQGKDAYELEVLLRVKESEIQYLKQEISS K D A L R V 1 1 0 1 0 0 2 0 0 0 3 0 0 0 0 0 0 0 1 1 0 0 10 0 1219.6449 Q6WCQ1 Q6WCQ1 898 907 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 0.024507 80.455 By MS/MS 2 0 1 1 2072900 0 0 2072900 1633 1507 1705 7211 6021 6021 1 0 0 468440 DAYLQSLAK ______________________________ ASLLAKDAYLQSLAKKICSHSAPEQQARTR K D A A K K 2 0 0 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1007.5288 O75683 O75683 8 16 SURF6 Surfeit locus protein 6 yes yes 2 0.02141 81.296 By MS/MS By matching 6 0.816 1 1 1 2 1 9677100 0 8387200 1289800 1634 279 1706 7212;7213;7214 6022 6022 1 0 2296500 228880 DAYQVILDGVK YGILADATEQVGQHKDAYQVILDGVKGGTK GQHKDAYQVILDGVKGGTKEKRLAAQFIPK K D A V K G 1 0 0 2 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 11 0 1219.6449 Q9BZZ5 Q9BZZ5 26 36 API5 Apoptosis inhibitor 5 yes yes 2 0.0047323 101.97 By matching By MS/MS By MS/MS 3.67 0.471 1 2 1 1 1 36036000 3175300 10138000 22723000 1635 1947 1707 7215;7216;7217 6023;6024 6024 2 2477300 3364500 4407100 DAYSGGAVNLYHVR AYDLARRAIYQATYRDAYSGGAVNLYHVRE RDAYSGGAVNLYHVREDGWIRVSSDNVADL R D A V R E 2 1 1 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 2 2 0 0 14 0 1520.7372 P28074 P28074 226 239 PSMB5 Proteasome subunit beta type-5 yes yes 2 4.3653E-05 160.53 By matching By MS/MS 7 0 2 1 1 10728000 1485800 0 9242100 1636 686 1708 7218;7219 6025 6025 1 3202200 0 1640000 DDAYWPEAK ERRPAVRRPYDLDRRDDAYWPEAKRAALDE YDLDRRDDAYWPEAKRAALDERYHSDFNRQ R D D A K R 2 0 0 2 0 0 1 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 9 0 1093.4716 Q15424 Q15424 720 728 SAFB Scaffold attachment factor B1 yes yes 2 0.0092972 89.355 By MS/MS 2 0.816 1 1 1 3 11419000 0 0 11419000 1637 1364 1709 7220;7221;7222 6026 6026 1 0 0 2506300 DDDIAALVVDNGSGMCK ______________________________ DIAALVVDNGSGMCKAGFAGDDAPRAVFPS M D D C K A 2 0 1 4 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 2 0 0 17 0 1778.7815 P60709 P60709 2 18 ACTB Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed yes yes 2 1.3772E-27 200.93 By MS/MS By MS/MS By MS/MS 4.75 0.433 1 3 1 1 2 37669000 3656100 3561000 30452000 1638 966 1710 7223;7224;7225;7226 6027;6028;6029;6030 6030 4 2929000 917920 4321800 DDDSLSEASHSK SQGHRKDSDKSRSRKDDDSLSEASHSKKTV SRKDDDSLSEASHSKKTVKKVVVVEQNGSF K D D S K K 1 0 0 3 0 0 1 0 1 0 1 1 0 0 0 4 0 0 0 0 0 0 12 0 1289.5372 Q8NDX6 Q8NDX6 67 78 ZNF740 Zinc finger protein 740 yes yes 2 0.00069519 121.83 By MS/MS 7 0 1 1 1876200 0 0 1876200 1639 1637 1711 7227 6031 6031 1 0 0 332930 DDEAAAVALSSLIHALDDLDMVAIVR RFFMGNQVLKVFAARDDEAAAVALSSLIHA LIHALDDLDMVAIVRYAYDKRANPQVGVAF R D D V R Y 6 1 0 5 0 0 1 0 1 2 4 0 1 0 0 2 0 0 0 3 0 0 26 0 2722.3847 P13010 P13010 369 394 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 8.4244E-09 86.236 By MS/MS 2.5 0.5 1 1 2 904050 0 0 904050 1640 542 1712 7228;7229 6032 6032 1 0 0 199590 DDEVQVVR ELRQKYNVRSMPIRKDDEVQVVRGHYKGQQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY K D D V R G 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 958.47197 P61254;Q9UNX3 P61254 52 59 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0015912 113.7 By matching By MS/MS 7.4 1.5 2 1 1 1 1 4 136350000 0 2137400 134210000 1641 989 1713 7230;7231;7232;7233;7234 6033;6034;6035;6036 6034 3 0 739900 24934000 DDGKLDLSVVENGGLK LRDILLQGLKAIGSKDDGKLDLSVVENGGL DGKLDLSVVENGGLKAKTITKKRKKEIEES K D D L K A 0 0 1 3 0 0 1 3 0 0 3 2 0 0 0 1 0 0 0 2 0 0 16 1 1657.8523 Q99986 Q99986 335 350 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2 0.00016668 151.16 By matching By MS/MS 4.5 0.5 1 1 1 1 14480000 0 5046600 9433000 1642 1871 1714 7235;7236 6037 6037 1 0 1674800 1315700 DDGTGQLLLPLSDAR DERLSYTQLLRRCRRDDGTGQLLLPLSDAR DDGTGQLLLPLSDARKLTFRGLRKQITMEE R D D A R K 1 1 0 3 0 1 0 2 0 0 4 0 0 0 1 1 1 0 0 0 0 0 15 0 1569.7999 Q15149 Q15149 4004 4018 PLEC Plectin yes yes 2 4.4159E-31 147.72 By MS/MS 1 0 1 1 0 0 0 0 1643 1348 1715 7237 6038 6038 1 0 0 0 DDLGNTLEK VEAIINPTNADIDLKDDLGNTLEKKGGKEF ADIDLKDDLGNTLEKKGGKEFVEAVLELRK K D D E K K 0 0 1 2 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1003.4822 O75367 O75367 227 235 H2AFY Core histone macro-H2A.1 yes yes 2 0.0082004 91.318 By MS/MS 5 0 1 1 105350000 0 0 105350000 1644 253 1716 7238 6039 6039 1 0 0 14695000 DDLIASILSEVAPTPLDELR TTSPASTSLSSPGQRDDLIASILSEVAPTP SILSEVAPTPLDELRGHKALVKLRSRQERD R D D L R G 2 1 0 3 0 0 2 0 0 2 4 0 0 0 2 2 1 0 0 1 0 0 20 0 2166.142 Q01970 Q01970 939 958 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2 3.3339E-70 229.32 By MS/MS 1.5 0.5 1 1 2 4442600 0 0 4442600 1645 1142 1717 7239;7240 6040 6040 1 0 0 999920 DDLYAEQMER EITTDLGKHQHMHDRDDLYAEQMEREMRHK HMHDRDDLYAEQMEREMRHKLKTAFKNFIE R D D E R E 1 1 0 2 0 1 2 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 0 1268.5343 Q9Y5B9 Q9Y5B9 761 770 SUPT16H FACT complex subunit SPT16 yes yes 2 5.9678E-20 161.92 By MS/MS 1.5 0.5 1 1 2 8142300 0 0 8142300 1646 2296 1718 7241;7242 6041;6042 6041 2 0 0 1840000 DDNMFQIGK TSRALSSSKQSSSSRDDNMFQIGKMRYVSV QSSSSRDDNMFQIGKMRYVSVRDFKGKVLI R D D G K M 0 0 1 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1066.4753 P53999 P53999 60 68 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 0.003065 101.33 By MS/MS By MS/MS 9 0.894 2 1 2 2 3 112500000 0 17001000 95495000 1647 926 1719 7243;7244;7245;7246;7247 6043;6044;6045;6046;6047 6046 5 0 18410000 51992000 DDNPNLPR AKQEPERNECFLQHKDDNPNLPRLVRPEVD ECFLQHKDDNPNLPRLVRPEVDVMCTAFHD K D D P R L 0 1 2 2 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 8 0 939.44101 CON__P02768-1;P02768 CON__P02768-1 131 138 ALB Serum albumin yes no 2 0.00051361 128.86 By MS/MS 5.33 2.98 1 1 1 1 1 1 1 1 1 9 263320000 263320000 0 0 + 1648 44 1720 7248;7249;7250;7251;7252;7253;7254;7255;7256 6048;6049;6050;6051;6052;6053;6054;6055 6048 7 229990000 0 0 DDPALATYYGSLFK FFKEFWEQKPLLIQRDDPALATYYGSLFKL RDDPALATYYGSLFKLTDLKSLCSRGMYYG R D D F K L 2 0 0 2 0 0 0 1 0 0 2 1 0 1 1 1 1 0 2 0 0 0 14 0 1559.7508 Q8IUF8 Q8IUF8 69 82 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 0.00045189 120.96 By MS/MS By MS/MS 4 0 2 1 1 12192000 0 3510300 8681800 1649 1567 1721 7257;7258 6056;6057 6057 2 0 1164900 1418000 DDPDGKQEAKPQQAAGMLSPK KLDSSPSVSSTLAAKDDPDGKQEAKPQQAA QEAKPQQAAGMLSPKTGGKEAASGTTPQKS K D D P K T 3 0 0 3 0 3 1 2 0 0 1 3 1 0 3 1 0 0 0 0 0 0 21 2 2210.0637 Q13428 Q13428 1239 1259 TCOF1 Treacle protein yes yes 3;4 1.0544E-05 82.477 By MS/MS 1.33 0.471 2 1 3 15782000 0 0 15782000 1650 1247 1722 7259;7260;7261 6058;6059 6058 2 0 0 3414300 DDPHACYSTVFDK LAKEYEATLEECCAKDDPHACYSTVFDKLK AKDDPHACYSTVFDKLKHLVDEPQNLIKQN K D D D K L 1 0 0 3 1 0 0 0 1 0 0 1 0 1 1 1 1 0 1 1 0 0 13 0 1553.6457 CON__P02769 CON__P02769 387 399 yes yes 2;3 0.00029713 144.7 By MS/MS 4.5 0.5 2 2 4 94031000 94031000 0 0 + 1651 45 1723 7262;7263;7264;7265 6060;6061;6062 6060 3 73731000 0 0 DDPLTNLNTAFDVAEK HRHRPELIDYGKLRKDDPLTNLNTAFDVAE DPLTNLNTAFDVAEKYLDIPKMLDAEDIVG K D D E K Y 2 0 2 3 0 0 1 0 0 0 2 1 0 1 1 0 2 0 0 1 0 0 16 0 1761.8421 P12814 P12814 199 214 ACTN1 Alpha-actinin-1 yes yes 2 5.2948E-05 111.12 By MS/MS By MS/MS 2 0 2 1 1 5887600 0 3040900 2846700 1652 540 1724 7266;7267 6063;6064 6063 2 0 1369400 643290 DDPSKPVHLTAFLGYK KRSSRHRGKVKSFPKDDPSKPVHLTAFLGY DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K D D Y K A 1 0 0 2 0 0 0 1 1 0 2 2 0 1 2 1 1 0 1 1 0 0 16 1 1786.9254 P39023 P39023 35 50 RPL3 60S ribosomal protein L3 yes yes 2;3;4 9.7991E-06 140.01 By MS/MS By MS/MS 3.82 1.34 1 1 2 2 5 5 6 361950000 0 155850000 206100000 1653 778 1725 7268;7269;7270;7271;7272;7273;7274;7275;7276;7277;7278 6065;6066;6067;6068;6069;6070;6071;6072;6073;6074;6075;6076 6068 12 0 43043000 30751000 DDSFFGETSHNYHK MDYEDDRLRDGERCRDDSFFGETSHNYHKF RDDSFFGETSHNYHKFDSEYERMGRGPGPL R D D H K F 0 0 1 2 0 0 1 1 2 0 0 1 0 2 0 2 1 0 1 0 0 0 14 0 1682.6961 P43243 P43243 232 245 MATR3 Matrin-3 yes yes 3 0.0093034 64.313 By MS/MS 2 0 1 1 9207900 0 0 9207900 1654 812 1726 7279 6077 6077 1 0 0 2080800 DDTVCLAK NFCLFRSETKDLLFRDDTVCLAKLHDRNTY TKDLLFRDDTVCLAKLHDRNTYEKYLGEEY R D D A K L 1 0 0 2 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 920.42733 P02787 P02787 652 659 TF Serotransferrin yes yes 2 0.037583 76.035 By MS/MS 9 0 1 1 5702700 5702700 0 0 1655 399 1727 7280 6078 6078 1 3200900 0 0 DDVAPESGDTTVK KKRQQARKTASVLSKDDVAPESGDTTVKKP SKDDVAPESGDTTVKKPESKKEQTPEHGKK K D D V K K 1 0 0 3 0 0 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1332.6045 O76021 O76021 319 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.00092966 115.57 By matching By MS/MS By MS/MS 3.67 1.11 1 2 1 2 1 2 3 95712000 2843500 9541900 83327000 1656 295 1728 7281;7282;7283;7284;7285;7286 6079;6080;6081;6082 6081 4 3426100 3576000 15718000 DDWEEKR DGRSATREPPYRVPRDDWEEKRHFRRDSFD EPPYRVPRDDWEEKRHFRRDSFDDRGPSLN R D D K R H 0 1 0 2 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 7 1 976.42502 P43243 P43243 176 182 MATR3 Matrin-3 yes yes 2 0.031207 106.42 By MS/MS By matching 2.5 0.5 1 1 1 1 9126500 0 7264900 1861600 1657 812 1729 7287;7288 6083 6083 1 0 3271500 361070 DEAEDYYDVITHPMDFQTVQNK VKYRFSWPFREPVTRDEAEDYYDVITHPMD DVITHPMDFQTVQNKCSCGSYRSVQEFLTD R D E N K C 1 0 1 4 0 2 2 0 1 1 0 1 1 1 1 0 2 0 2 2 0 0 22 0 2657.1592 Q9UIG0 Q9UIG0 1371 1392 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 1.3009E-09 95.48 By MS/MS 1.5 0.5 1 1 2 12861000 0 0 12861000 1658 2164 1730 7289;7290 6084 6084 1 0 0 2814000 DEILPTTPISEQK PKKPLPDHVSIVEPKDEILPTTPISEQKGG PKDEILPTTPISEQKGGKPEPPAMPQPVPT K D E Q K G 0 0 0 1 0 1 2 0 0 2 1 1 0 0 2 1 2 0 0 0 0 0 13 0 1469.7613 P23396 P23396 215 227 RPS3 40S ribosomal protein S3 yes yes 2 0.00019655 148.91 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 321420000 0 40239000 281180000 1659 641 1731 7291;7292;7293 6085;6086;6087 6087 3 0 13929000 43086000 DEKEQLIIPQVPLFNILAK FMYLTLDLPTAPLYKDEKEQLIIPQVPLFN QLIIPQVPLFNILAKFNGITEKEYKTYKEN K D E A K F 1 0 1 1 0 2 2 0 0 3 3 2 0 1 2 0 0 0 0 1 0 0 19 1 2207.2566 Q53GS9 Q53GS9 403 421 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 3 0.0031382 58.864 By MS/MS 3 0 1 1 5334800 0 0 5334800 1660 1426 1732 7294 6088 6088 1 0 0 1034700 DELADEIANSSGK LAAAERAKRQAQQERDELADEIANSSGKGA ERDELADEIANSSGKGALALEEKRRLEARI R D E G K G 2 0 1 2 0 0 2 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 13 0 1347.6154 P35579 P35579 1704 1716 MYH9 Myosin-9 yes yes 2 1.2848E-17 193.83 By MS/MS 1.5 0.5 1 1 2 31461000 0 31461000 0 1661 752 1733 7295;7296 6089 6089 1 0 15325000 0 DELHIVEAEAMNYEGSPIK HQLSLRTVSLGAGAKDELHIVEAEAMNYEG IVEAEAMNYEGSPIKVTLATLKMSVQPTVS K D E I K V 2 0 1 1 0 0 4 1 1 2 1 1 1 0 1 1 0 0 1 1 0 0 19 0 2144.0096 P06748 P06748 55 73 NPM1 Nucleophosmin yes yes 2;3 3.7892E-180 292.76 By matching By MS/MS By MS/MS 6.31 1.16 1 3 5 4 3 1 2 13 501360000 610870 5960400 494790000 1662 449 1734;1735 7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312 6090;6091;6092;6093;6094;6095;6096 6094 164 7 813380 2464100 76588000 DELLAQHAAGALGLPDLVAVLTR VWDVLFSSYLSEARRDELLAQHAAGALGLP AGALGLPDLVAVLTRVIEETEERLSKVSFR R D E T R V 5 1 0 2 0 1 1 2 1 0 6 0 0 0 1 0 1 0 0 2 0 0 23 0 2342.2958 P58107 P58107 2674 2696 EPPK1 Epiplakin yes no 3 0.00042235 63.376 By MS/MS By matching 1.5 0.5 1 1 1 1 1698100 0 503260 1194800 1663 958 1736 7313;7314 6097 6097 1 0 245990 270000 DELPYTFAAPESYEELR KGLISGKERAGKATRDELPYTFAAPESYEE LPYTFAAPESYEELRSLLLGRSMEEQLLVV R D E L R S 2 1 0 1 0 0 4 0 0 0 2 0 0 1 2 1 1 0 2 0 0 0 17 0 2028.9317 P78316 P78316 420 436 NOP14 Nucleolar protein 14 yes yes 2 0.00034469 98 By matching By MS/MS 1.5 0.5 1 1 1 1 8214000 0 528080 7685900 1664 1083 1737 7315;7316 6098 6098 1 0 258120 1736900 DENSVELTMAEGPYK LVADPPIARLSVSGRDENSVELTMAEGPYK DENSVELTMAEGPYKIILTARPFRLDLLED R D E Y K I 1 0 1 1 0 0 3 1 0 0 1 1 1 0 1 1 1 0 1 1 0 0 15 0 1681.7505 Q14697 Q14697 134 148 GANAB Neutral alpha-glucosidase AB yes yes 2 0.014658 98.407 By MS/MS 2 0 1 1 2470400 0 0 2470400 1665 1317 1738 7317 6099 6099 0 0 0 558270 DEPTGEVLSLVGK LVLQADRSLIDRTRRDEPTGEVLSLVGKLE RRDEPTGEVLSLVGKLEGTRMGDKAQRTKP R D E G K L 0 0 0 1 0 0 2 2 0 0 2 1 0 0 1 1 1 0 0 2 0 0 13 0 1342.698 O75643 O75643 34 46 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0014034 110.38 By MS/MS By MS/MS 1 0 2 1 1 53024000 0 25077000 27947000 1666 277 1739 7318;7319 6100;6101;6102 6101 3 0 12257000 6021600 DEQDVLLVHHPDMPENSR DSSVTPCVPAVSMNRDEQDVLLVHHPDMPE DVLLVHHPDMPENSRVLRVVLLGAPNAGKS R D E S R V 0 1 1 3 0 1 2 0 2 0 2 0 1 0 2 1 0 0 0 2 0 0 18 0 2129.98 O75616 O75616 95 112 ERAL1 GTPase Era, mitochondrial yes yes 2 0.05547 49.627 By MS/MS 4.5 0.5 1 1 2 36020000 0 0 36020000 1667 275 1740 7320;7321 6103 6103 1 0 0 5786800 DEQGALLLGHELQSFLK SQQATVKKSSKKSARDEQGALLLGHELQSF QGALLLGHELQSFLKTARKKHKSSSDAHSS R D E L K T 1 0 0 1 0 2 2 2 1 0 5 1 0 1 0 1 0 0 0 0 0 0 17 0 1896.9945 Q9UGU5 Q9UGU5 230 246 HMGXB4 HMG domain-containing protein 4 yes yes 2;3 1.0269E-05 136.33 By MS/MS 3.33 0.471 2 1 3 15439000 0 0 15439000 1668 2145 1741 7322;7323;7324 6104;6105 6105 2 0 0 2929900 DEQILAQLLPLLHGNVNGSK AQEEQTPKASKRERRDEQILAQLLPLLHGN AQLLPLLHGNVNGSKVIIREFQEHCRRGLL R D E S K V 1 0 2 1 0 2 1 2 1 1 5 1 0 0 1 1 0 0 0 1 0 0 20 0 2158.1746 Q13111 Q13111 732 751 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3 0.0014694 59.857 By MS/MS 2 0 1 1 845810 0 0 845810 1669 1220 1742 7325 6106 6106 1 0 0 191140 DEQLESLFQR YSILRHVAEVLEYTKDEQLESLFQRTAWVF LEYTKDEQLESLFQRTAWVFDDKYKRPGYG K D E Q R T 0 1 0 1 0 2 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 10 0 1263.6095 P05198 P05198 124 133 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 7.3847E-11 167.23 By matching By MS/MS 6 0 2 1 1 13008000 0 1004800 12003000 1670 428 1743 7326;7327 6107 6107 1 0 347820 1795800 DESSPYAAMLAAQDVAQR TICRVTGGMKVKADRDESSPYAAMLAAQDV SPYAAMLAAQDVAQRCKELGITALHIKLRA R D E Q R C 5 1 0 2 0 2 1 0 0 0 1 0 1 0 1 2 0 0 1 1 0 0 18 0 1921.884 P62263 P62263 67 84 RPS14 40S ribosomal protein S14 yes yes 2 9.2856E-66 238.2 By MS/MS By MS/MS 8.4 1.02 1 2 1 1 1 4 59405000 0 2616800 56788000 1671 1012 1744 7328;7329;7330;7331;7332 6108;6109;6110;6111 6110 4 0 1190500 11657000 DETEFYLGK REHTALLKIEGVYARDETEFYLGKRCAYVY EGVYARDETEFYLGKRCAYVYKAKNNTVTP R D E G K R 0 0 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 9 0 1100.5026 P18077 P18077 37 45 RPL35A 60S ribosomal protein L35a yes yes 2 0.01547 85.212 By MS/MS By matching By MS/MS 9 0.632 1 3 1 1 1 3 214260000 10214000 878970 203170000 1672 593 1745 7333;7334;7335;7336;7337 6112;6113;6114;6115 6112 4 5732900 703840 67375000 DETEFYLGKR REHTALLKIEGVYARDETEFYLGKRCAYVY GVYARDETEFYLGKRCAYVYKAKNNTVTPG R D E K R C 0 1 0 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 10 1 1256.6037 P18077 P18077 37 46 RPL35A 60S ribosomal protein L35a yes yes 2;3 9.4877E-07 157.58 By MS/MS 8.67 0.471 1 2 3 40609000 0 0 40609000 1673 593 1746 7338;7339;7340 6116;6117 6117 2 0 0 11803000 DETNYGIPQR SASRDKTIIMWKLTRDETNYGIPQRALRGH WKLTRDETNYGIPQRALRGHSHFVSDVVIS R D E Q R A 0 1 1 1 0 1 1 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1191.552 P63244 P63244 48 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 6.8898E-20 163.99 By MS/MS By MS/MS 6.2 2.04 1 1 2 1 2 3 90011000 0 20740000 69271000 1674 1068 1747 7341;7342;7343;7344;7345 6118;6119;6120;6121 6121 4 0 7156700 10272000 DETSGLHLLPLPESAPALPTEEQVQR QGRTSYAQLLEECPRDETSGLHLLPLPESA PESAPALPTEEQVQRSLQAVPGAKDGTSLW R D E Q R S 2 1 0 1 0 2 4 1 1 0 5 0 0 0 4 2 2 0 0 1 0 0 26 0 2826.44 P58107 P58107 1105 1130 EPPK1 Epiplakin yes yes 3 1.7359E-05 66.3 By MS/MS 1 0 1 1 2612400 0 2612400 0 1675 958 1748 7346 6122 6122 1 0 1276900 0 DEVASLLFDPK QRLALPQSDASLLSRDEVASLLFDPKEAAT LLSRDEVASLLFDPKEAATIDRDTAFAIGC R D E P K E 1 0 0 2 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 1 0 0 11 0 1232.6289 Q9H583 Q9H583 24 34 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.0046982 102.06 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 19711000 0 6070900 13641000 1676 1984 1749 7347;7348;7349 6123;6124 6123 2 0 2967400 2963400 DFADILVQPTLEENK EEEREFRKQFPLHEKDFADILVQPTLEENK DFADILVQPTLEENKGTSDGQEEEAGTNPA K D F N K G 1 0 1 2 0 1 2 0 0 1 2 1 0 1 1 0 1 0 0 1 0 0 15 0 1730.8727 Q9NU22 Q9NU22 3584 3598 MDN1 Midasin yes yes 2 0.0018764 91.937 By MS/MS 1.5 0.5 1 1 2 29553000 0 29553000 0 1677 2056 1750 7350;7351 6125 6125 1 0 14169000 0 DFATVYVEAIK FWQQDDPQSSWDRVKDFATVYVEAIKDSGR DRVKDFATVYVEAIKDSGRDYVAQFEASAL K D F I K D 2 0 0 1 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 2 0 0 11 0 1254.6496 CON__P15497 CON__P15497 36 46 yes yes 2 0.0048605 101.65 By matching By MS/MS 7.83 1.34 1 2 1 1 1 1 5 90119000 13246000 0 76872000 + 1678 59 1751 7352;7353;7354;7355;7356;7357 6126;6127;6128;6129 6129 3 28549000 0 20051000 DFATVYVEAIKDSGR FWQQDDPQSSWDRVKDFATVYVEAIKDSGR DFATVYVEAIKDSGRDYVAQFEASALGKQL K D F G R D 2 1 0 2 0 0 1 1 0 1 0 1 0 1 0 1 1 0 1 2 0 0 15 1 1669.8312 CON__P15497 CON__P15497 36 50 yes yes 2 0.0044391 106.49 By MS/MS 7 0 1 1 1161300 1161300 0 0 + 1679 59 1752 7358 6130 6130 1 2502800 0 0 DFDFVPPVVR VEATSYALLALLQLKDFDFVPPVVRWLNEQ LLQLKDFDFVPPVVRWLNEQRYYGGGYGST K D F V R W 0 1 0 2 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 3 0 0 10 0 1189.6132 P01024 P01024 1245 1254 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.055085 71.501 By MS/MS 9 0 1 1 3541400 3541400 0 0 1680 371 1753 7359 6131 6131 1 1987800 0 0 DFEASFIR KIRKIRARDDNPGLRDFEASFIRLLDKITN DDNPGLRDFEASFIRLLDKITNGSRIEINQ R D F I R L 1 1 0 1 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 8 0 983.47125 Q9Y2P8 Q9Y2P8 46 53 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.048529 73.324 By matching By MS/MS 6 0 2 1 1 4309500 0 1117700 3191800 1681 2243 1754 7360;7361 6132 6132 1 0 386920 477520 DFFQSYGNVVELR FIGNLPHEVDKSELKDFFQSYGNVVELRIN LKDFFQSYGNVVELRINSGGKLPNFGFVVF K D F L R I 0 1 1 1 0 1 1 1 0 0 1 0 0 2 0 1 0 0 1 2 0 0 13 0 1572.7573 Q13283 Q13283 358 370 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 1.4075E-05 162.36 By matching By MS/MS By MS/MS 5.29 1.83 1 3 2 1 1 2 4 70920000 2303600 7912600 60704000 1682 1236 1755 7362;7363;7364;7365;7366;7367;7368 6133;6134;6135;6136 6135 4 1797300 2699400 10618000 DFHVDEQTTVK GKWEKPFEMKHTTERDFHVDEQTTVKVPMM TTERDFHVDEQTTVKVPMMNRLGMFDLHYC R D F V K V 0 0 0 2 0 1 1 0 1 0 0 1 0 1 0 0 2 0 0 2 0 0 11 0 1317.6201 CON__P34955 CON__P34955 229 239 yes yes 2;3 1.653E-09 166.66 By MS/MS By MS/MS By MS/MS 6.62 2.36 1 2 3 2 2 4 4 3 3 8 5 11 348760000 175050000 13443000 160270000 + 1683 64 1756 7369;7370;7371;7372;7373;7374;7375;7376;7377;7378;7379;7380;7381;7382;7383;7384;7385;7386;7387;7388;7389;7390;7391;7392 6137;6138;6139;6140;6141;6142;6143;6144;6145;6146;6147;6148;6149;6150;6151;6152;6153;6154;6155;6156;6157;6158;6159 6143 22 150930000 27444000 33681000 DFIATLEAEAFDDVVGETVGK ALTEPSPDIEGEIKRDFIATLEAEAFDDVV EAEAFDDVVGETVGKTDYIPLLDVDEKTGN R D F G K T 3 0 0 3 0 0 3 2 0 1 1 1 0 2 0 0 2 0 0 3 0 0 21 0 2225.074 P27816 P27816 24 44 MAP4 Microtubule-associated protein 4 yes yes 2;3 0.006015 61.212 By MS/MS 1.5 0.5 2 2 4 5175700 0 0 5175700 1684 683 1757 7393;7394;7395;7396 6160;6161 6161 2 0 0 1155200 DFKPGDLIFAK ______________________________ ______________________________ R D F A K M 1 0 0 2 0 0 0 1 0 1 1 2 0 2 1 0 0 0 0 0 0 0 11 1 1249.6707 O75475 O75475 4 14 PSIP1 PC4 and SFRS1-interacting protein yes yes 3 0.0020543 93.258 By MS/MS By MS/MS 4.42 1.85 1 1 2 2 2 2 2 6 6 86901000 0 15172000 71730000 1685 262 1758 7397;7398;7399;7400;7401;7402;7403;7404;7405;7406;7407;7408 6162;6163;6164;6165;6166;6167;6168;6169;6170;6171 6165 10 0 5569900 12256000 DFLAGGIAAAISK ______________________________ AKDFLAGGIAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 2 1 1 0 1 0 1 0 0 0 0 0 0 13 0 1232.6765 P12236 P12236 11 23 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 2 0.062055 66.267 By matching By MS/MS 6.33 0.471 2 1 1 2 21653000 0 3527400 18125000 1686 534 1759 7409;7410;7411 6172 6172 1 0 1221100 2748500 DFLAGGVAAAISK ______________________________ AKDFLAGGVAAAISKTAVAPIERVKLLLQV K D F S K T 4 0 0 1 0 0 0 2 0 1 1 1 0 1 0 1 0 0 0 1 0 0 13 0 1218.6608 P05141 P05141 11 23 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.012267 85.813 By MS/MS 7 0.816 1 1 1 3 39397000 0 39397000 0 1687 427 1760 7412;7413;7414 6173 6173 1 0 14608000 0 DFLDSLGFSTR LSSKGVKIWDANGSRDFLDSLGFSTREEGD NGSRDFLDSLGFSTREEGDLGPVYGFQWRH R D F T R E 0 1 0 2 0 0 0 1 0 0 2 0 0 2 0 2 1 0 0 0 0 0 11 0 1256.6037 P04818 P04818 116 126 TYMS Thymidylate synthase yes yes 2 0.00032712 121.73 By MS/MS 6.5 0.5 1 1 2 3472900 0 0 3472900 1688 418 1761 7415;7416 6174 6174 1 0 0 533800 DFLLKPELLR DVKGSYVSIHSSGFRDFLLKPELLRAIVDC SSGFRDFLLKPELLRAIVDCGFEHPSEVQH R D F L R A 0 1 0 1 0 0 1 0 0 0 4 1 0 1 1 0 0 0 0 0 0 0 10 1 1242.7336 Q13838;O00148 Q13838 49 58 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2;3 0.00068851 147.19 By MS/MS By MS/MS 5 1.21 1 3 4 1 2 3 8 228630000 0 23550000 205080000 1689 1271 1762 7417;7418;7419;7420;7421;7422;7423;7424;7425;7426;7427 6175;6176;6177;6178;6179;6180;6181;6182;6183 6178 9 0 6146900 30226000 DFLLQQTMLR EAALSCCSDADPSTKDFLLQQTMLRVKDPK DPSTKDFLLQQTMLRVKDPKKSLDFYTRVL K D F L R V 0 1 0 1 0 2 0 0 0 0 3 0 1 1 0 0 1 0 0 0 0 0 10 0 1263.6645 Q04760 Q04760 29 38 GLO1 Lactoylglutathione lyase yes yes 2 8.9047E-05 147.19 By MS/MS By MS/MS 8.25 1.3 2 1 1 1 3 22385000 2237600 0 20147000 1690 1160 1763 7428;7429;7430;7431 6184;6185;6186 6185 3 4822400 0 6140300 DFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN K D F A R R 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 834.45995 P63173 P63173 10 16 RPL38 60S ribosomal protein L38 yes yes 2 0.011521 118.01 By MS/MS By MS/MS 10 0 2 1 1 37904000 0 3669400 34235000 1691 1064 1764 7432;7433 6187;6188 6187 2 0 18564000 74875000 DFLQAMNDIRPSAMR LPDVKVAGLVKITLKDFLQAMNDIRPSAMR DFLQAMNDIRPSAMREIAIDVPNVSWSDIG K D F M R E 2 2 1 2 0 1 0 0 0 1 1 0 2 1 1 1 0 0 0 0 0 0 15 1 1763.8447 Q8NB90 Q8NB90 601 615 SPATA5 Spermatogenesis-associated protein 5 yes yes 3 6.6785E-05 123.02 By MS/MS 2.5 0.5 1 1 2 5229900 0 0 5229900 1692 1624 1765 7434;7435 6189 6189 1 0 0 1146500 DFLTPPLLSVR GGAQVQQVLNIECLRDFLTPPLLSVRFRYG ECLRDFLTPPLLSVRFRYGGAPQALTLKLP R D F V R F 0 1 0 1 0 0 0 0 0 0 3 0 0 1 2 1 1 0 0 1 0 0 11 0 1256.7129 O95782 O95782 833 843 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 2.145E-05 149.72 By MS/MS By MS/MS 2 0 2 1 1 7996300 0 3573800 4422500 1693 339 1766 7436;7437 6190;6191 6191 2 0 1609300 999390 DFMIQGGDFTR KGFGYKNSKFHRVIKDFMIQGGDFTRGDGT RVIKDFMIQGGDFTRGDGTGGKSIYGERFP K D F T R G 0 1 0 2 0 1 0 2 0 1 0 0 1 2 0 0 1 0 0 0 0 0 11 0 1285.5761 P23284 P23284 99 109 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 6.6245E-05 143.21 By MS/MS By MS/MS 7 0 4 2 2 207120000 0 15648000 191470000 1694 640 1767;1768 7438;7439;7440;7441 6192;6193;6194 6193 291 2 0 8985200 33976000 DFMIQGGDPTGTGR RRGYYNGTKFHRIIKDFMIQGGDPTGTGRG KDFMIQGGDPTGTGRGGASIYGKQFEDELH K D F G R G 0 1 0 2 0 1 0 4 0 1 0 0 1 1 1 0 2 0 0 0 0 0 14 0 1450.6511 Q9Y3C6 Q9Y3C6 59 72 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 2 0.024037 72.434 By MS/MS By matching 8 0 2 1 1 9380600 0 2427000 6953600 1695 2269 1769 7442;7443 6195 6195 1 0 1104200 1066000 DFMYVSQDPKDQLLLGPTYATPK EKALAMGYKPKAYLRDFMYVSQDPKDQLLL PKDQLLLGPTYATPKVLEKAGLTMNDIDAF R D F P K V 1 0 0 3 0 2 0 1 0 0 3 2 1 1 3 1 2 0 2 1 0 0 23 1 2626.2989 P55084 P55084 339 361 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 3 5.5316E-05 74.364 By MS/MS 5 0 1 1 3751400 0 3751400 0 1696 938 1770 7444 6196 6196 1 0 966990 0 DFNHINVELSLLGK GRTVIVKGPRGTLRRDFNHINVELSLLGKK RDFNHINVELSLLGKKKKRLRVDKWWGNRK R D F G K K 0 0 2 1 0 0 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 14 0 1597.8464 Q5IFJ7;P32969 Q5IFJ7 37 50 RPL9 60S ribosomal protein L9 yes no 3 0.0019891 79.81 By matching By MS/MS 6.5 0.5 1 1 1 1 12321000 429610 0 11892000 1697 729 1771 7445;7446 6197 6197 1 572030 0 2110100 DFNQFIK KEKLLTQGFTNWNKRDFNQFIKANEKWGRD GFTNWNKRDFNQFIKANEKWGRDDIENIAR R D F I K A 0 0 1 1 0 1 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 0 7 0 910.45487 O60264;P28370 O60264 849 855 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 0.02997 92.677 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 53935000 0 17405000 36529000 1698 223;693 1772 7447;7448;7449;7450 6198;6199;6200;6201 6199 4 0 7923900 8147500 DFQAISDVIGNK EEQLLAVQAIRKYGRDFQAISDVIGNKSVV YGRDFQAISDVIGNKSVVQVKNFFVNYRRR R D F N K S 1 0 1 2 0 1 0 1 0 2 0 1 0 1 0 1 0 0 0 1 0 0 12 0 1305.6565 Q9UKL0 Q9UKL0 404 415 RCOR1 REST corepressor 1 yes yes 2 0.058138 70.977 By MS/MS 4 0 1 1 1600800 0 1600800 0 1699 2180 1773 7451 6202 6202 1 0 531250 0 DFQQALYELSYHVIK RILSENKSHDSSTYRDFQQALYELSYHVIK DFQQALYELSYHVIKGNLKHEQASNVLSDI R D F I K G 1 0 0 1 0 2 1 0 1 1 2 1 0 1 0 1 0 0 2 1 0 0 15 0 1852.9359 Q8NI27 Q8NI27 44 58 THOC2 THO complex subunit 2 yes yes 2;3 0.00028805 125.54 By MS/MS 1.33 0.471 2 1 3 20180000 0 0 20180000 1700 1647 1774 7452;7453;7454 6203;6204;6205 6204 3 0 0 4356700 DFSALESQLQDTQELLQEENR GLLSQSDSKSSKLTKDFSALESQLQDTQEL SQLQDTQELLQEENRQKLSLSTKLKQVEDE K D F N R Q 1 1 1 2 0 4 4 0 0 0 4 0 0 1 0 2 1 0 0 0 0 0 21 0 2492.1667 P35579 P35579 1302 1322 MYH9 Myosin-9 yes yes 2;3 0 444.58 By MS/MS By MS/MS 1.43 0.495 4 3 4 3 98391000 0 57893000 40497000 1701 752 1775 7455;7456;7457;7458;7459;7460;7461 6206;6207;6208;6209;6210;6211 6207 6 0 28165000 8741800 DFSAPTLEDHFNK RGAFFMDEDEEVYKRDFSAPTLEDHFNKTI KRDFSAPTLEDHFNKTILPKVMQVKNFGRS R D F N K T 1 0 1 2 0 0 1 0 1 0 1 1 0 2 1 1 1 0 0 0 0 0 13 0 1519.6943 P55081 P55081 359 371 MFAP1 Microfibrillar-associated protein 1 yes yes 2;3 0.0012016 109.15 By matching By MS/MS 3.5 0.5 2 2 1 3 31501000 941600 0 30560000 1702 937 1776 7462;7463;7464;7465 6212;6213;6214 6213 3 734610 0 5745100 DFTDLIVINEDRK RGLALKKIIPQCIARDFTDLIVINEDRKTP ARDFTDLIVINEDRKTPNGLILSHLPNGPT R D F R K T 0 1 1 3 0 0 1 0 0 2 1 1 0 1 0 0 1 0 0 1 0 0 13 1 1576.8097 Q9H9Y2 Q9H9Y2 191 203 RPF1 Ribosome production factor 1 yes yes 2 0.0032303 109.16 By MS/MS 5 0 1 1 5087800 0 0 5087800 1703 1999 1777 7466 6215 6215 1 0 0 709650 DFTPVCTTELGR DFLGDSWGILFSHPRDFTPVCTTELGRAAK HPRDFTPVCTTELGRAAKLAPEFAKRNVKL R D F G R A 0 1 0 1 1 0 1 1 0 0 1 0 0 1 1 0 3 0 0 1 0 0 12 0 1394.65 P30041 P30041 42 53 PRDX6 Peroxiredoxin-6 yes yes 2 0.02104 84.054 By MS/MS 7 0 1 1 4069600 0 0 4069600 1704 705 1778 7467 6216 6216 1 0 0 722120 DFTVSAMHGDMDQK TRRKVDWLTEKMHARDFTVSAMHGDMDQKE RDFTVSAMHGDMDQKERDVIMREFRSGSSR R D F Q K E 1 0 0 3 0 1 0 1 1 0 0 1 2 1 0 1 1 0 0 1 0 0 14 0 1580.6599 P60842 P60842 296 309 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2 0.01093 79.697 By MS/MS 4.5 0.5 1 1 2 28126000 0 0 28126000 1705 967 1779 7468;7469 6217;6218 6218 2 0 0 4022300 DFVAEPMGEK ______________________________ SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK R D F E K P 1 0 0 1 0 0 2 1 0 0 0 1 1 1 1 0 0 0 0 1 0 0 10 0 1121.5063 O75531 O75531 9 18 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2 0.0014824 108.98 By MS/MS 9.5 0.5 1 1 2 37489000 0 0 37489000 1706 269 1780 7470;7471 6219 6219 1 0 0 66945000 DFVAEPMGEKPVGSLAGIGEVLGK ______________________________ KPVGSLAGIGEVLGKKLEERGFDKAYVVLG R D F G K K 2 0 0 1 0 0 3 5 0 1 2 2 1 1 2 1 0 0 0 3 0 0 24 1 2399.2406 O75531 O75531 9 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2;3 1.5062E-07 88.561 By MS/MS By MS/MS 9.29 0.7 1 3 3 2 5 142250000 0 32715000 109540000 1707 269 1781;1782 7472;7473;7474;7475;7476;7477;7478 6220;6221;6222;6223;6224;6225;6226 6220 103 7 0 165510000 36244000 DFVEDDTTHG NKVSHIDVITAEMAKDFVEDDTTHG_____ AEMAKDFVEDDTTHG_______________ K D F H G - 0 0 0 3 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1134.4465 Q9UQE7 Q9UQE7 1208 1217 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0039306 100.45 By MS/MS By MS/MS 4.5 3.59 1 2 1 1 1 1 5 32243000 0 10929000 21314000 1708 2222 1783 7479;7480;7481;7482;7483;7484 6227;6228;6229 6227 2 0 4921600 8946500 DFVNMMLGK ISEVTGGVSDTISYRDFVNMMLGKRSAVLK DTISYRDFVNMMLGKRSAVLKLVMMFEGKA R D F G K R 0 0 1 1 0 0 0 1 0 0 1 1 2 1 0 0 0 0 0 1 0 0 9 0 1053.4987 Q9BQI0 Q9BQI0 107 115 AIF1L Allograft inflammatory factor 1-like yes yes 2 0.012827 86.953 By MS/MS By matching 8 0 2 1 1 10744000 0 4999200 5744600 1709 1886 1784 7485;7486 6230 6230 1 0 2274500 880700 DFVNYLVR GNSTNKKDAQSNAARDFVNYLVRINEIKSE AQSNAARDFVNYLVRINEIKSEEVPAFGVA R D F V R I 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 2 0 0 8 0 1024.5342 Q08211 Q08211 64 71 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00077693 125.08 By MS/MS By MS/MS By MS/MS 4.67 2.92 3 3 2 1 2 2 1 1 2 1 2 10 6 309580000 12689000 167810000 129080000 1710 1182 1785 7487;7488;7489;7490;7491;7492;7493;7494;7495;7496;7497;7498;7499;7500;7501;7502;7503;7504 6231;6232;6233;6234;6235;6236;6237;6238;6239;6240;6241;6242;6243;6244;6245;6246;6247 6233 17 14778000 79179000 27873000 DFVPNSVSFSWK SPSDESTVALGCLARDFVPNSVSFSWKFNN LARDFVPNSVSFSWKFNNSTVSSERFWTFP R D F W K F 0 0 1 1 0 0 0 0 0 0 0 1 0 2 1 3 0 1 0 2 0 0 12 0 1411.6772 CON__Q1RMK2 CON__Q1RMK2 174 185 yes yes 2 0.0092144 95.573 By matching By MS/MS 3 0 2 1 1 7249800 1493800 0 5756000 + 1711 76 1786 7505;7506 6248 6248 1 1723500 0 1116400 DFVVGALILR VRICFQGDEGACPTRDFVVGALILRSIGMD ACPTRDFVVGALILRSIGMDPSDIYAVIQI R D F L R S 1 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1101.6546 Q9NUD5 Q9NUD5 182 191 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 2 0.0061085 95.531 By MS/MS By MS/MS 5 0 2 1 1 2431000 0 1944400 486500 1712 2057 1787 7507;7508 6249;6250 6250 2 0 501220 67858 DFYEMLAER LAFYHCMEKSGQDIRDFYEMLAERREERRA SGQDIRDFYEMLAERREERRASYDYNQDRT R D F E R R 1 1 0 1 0 0 2 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 9 0 1172.5172 Q96T58 Q96T58 608 616 SPEN Msx2-interacting protein yes yes 2 0.00059857 127.56 By MS/MS 1.5 0.5 1 1 2 3233200 0 0 3233200 1713 1839 1788 7509;7510 6251 6251 1 0 0 720350 DFYFSVK KEQIGKVDEIFGQLRDFYFSVKLSENMKAS DEIFGQLRDFYFSVKLSENMKASSFKKLQK R D F V K L 0 0 0 1 0 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 7 0 904.43307 Q9NY12 Q9NY12 122 128 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.055398 76.035 By MS/MS By matching 7 0 2 1 1 30989000 0 7750100 23239000 1714 2093 1789 7511;7512 6252 6252 1 0 4450200 4123700 DFYVAFQDLPTR LKTFVKDRKEIPLAKDFYVAFQDLPTRHKI LAKDFYVAFQDLPTRHKIRELTSSRIGLLT K D F T R H 1 1 0 2 0 1 0 0 0 0 1 0 0 2 1 0 1 0 1 1 0 0 12 0 1470.7143 Q14566 Q14566 109 120 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0010439 117.67 By MS/MS 2 0 1 1 2661200 0 2661200 0 1715 1305 1790 7513 6253 6253 1 0 1198400 0 DGAAYFYGPIFIHPEETEHEPTK LVRPRVGRIEKVWVRDGAAYFYGPIFIHPE PIFIHPEETEHEPTKMFYKKEVFLSNLEET R D G T K M 2 0 0 1 0 0 4 2 2 2 0 1 0 2 3 0 2 0 2 0 0 0 23 0 2647.2231 Q86U86 Q86U86 1186 1208 PBRM1 Protein polybromo-1 yes yes 4 0.01253 35.546 By MS/MS 1.5 0.5 1 1 2 18675000 0 0 18675000 1716 1545 1791 7514;7515 6254 6254 1 0 0 4070800 DGAGDVAFIR QEPYFSYSGAFKCLRDGAGDVAFIRESTVF FKCLRDGAGDVAFIRESTVFEDLSDEAERD R D G I R E 2 1 0 2 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1019.5036 P02788 P02788 220 229 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 2.561E-49 219.56 By MS/MS By matching 5.38 2.56 1 1 1 2 2 2 1 1 1 1 11 2 264550000 259180000 5363800 0 1717 400 1792 7516;7517;7518;7519;7520;7521;7522;7523;7524;7525;7526;7527;7528 6255;6256;6257;6258;6259;6260;6261;6262;6263;6264 6255 10 271310000 1746500 0 DGAGDVAFVK LNQYFGYSGAFKCLKDGAGDVAFVKHSTIF FKCLKDGAGDVAFVKHSTIFENLANKADRD K D G V K H 2 0 0 2 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 0 977.48181 P02787 P02787 216 225 TF Serotransferrin yes yes 2 0.0057387 96.331 By MS/MS 9.5 0.5 1 1 2 92266000 92266000 0 0 1718 399 1793 7529;7530 6265 6265 1 59731000 0 0 DGALHMIGSLAEILLK CYQILTEPNADPRKKDGALHMIGSLAEILL GALHMIGSLAEILLKKKIYKDQMEYMLQNH K D G L K K 2 0 0 1 0 0 1 2 1 2 4 1 1 0 0 1 0 0 0 0 0 0 16 0 1679.928 O95373 O95373 430 445 IPO7 Importin-7 yes yes 3 2.0676E-05 102.64 By MS/MS 2 0 1 1 4749700 0 0 4749700 1719 322 1794 7531 6266 6266 1 0 0 1073300 DGDFENPVPYTGAVK YKLDKESYPVFYLFRDGDFENPVPYTGAVK DGDFENPVPYTGAVKVGAIQRWLKGQGVYL R D G V K V 1 0 1 2 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 2 0 0 15 0 1607.7468 P30040 P30040 123 137 ERP29 Endoplasmic reticulum resident protein 29 yes yes 2 0.029709 65.348 By MS/MS 7 0 1 1 5998400 0 0 5998400 1720 704 1795 7532 6267 6267 1 0 0 1064400 DGEEAGAYDGPR NKYGVSGYPTLKIFRDGEEAGAYDGPRTAD IFRDGEEAGAYDGPRTADGIVSHLKKQAGP R D G P R T 2 1 0 2 0 0 2 3 0 0 0 0 0 0 1 0 0 0 1 0 0 0 12 0 1235.5055 P30101 P30101 108 119 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.0046914 103.88 By MS/MS 4 0 1 1 2652800 0 0 2652800 1721 711 1796 7533 6268 6268 1 0 0 433300 DGELHIAEHPAGHLVLK AIASLAATGLHPGGKDGELHIAEHPAGHLV ELHIAEHPAGHLVLKWLIEQDKKMKENGRE K D G L K W 2 0 0 1 0 0 2 2 3 1 3 1 0 0 1 0 0 0 0 1 0 0 17 0 1834.969 Q15397 Q15397 543 559 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 3 0.057485 31.155 By MS/MS 3 0 1 1 10735000 0 0 10735000 1722 1362 1797 7534 6269 6269 1 0 0 2082100 DGFFGNPR IAELPPKVSVFVPPRDGFFGNPRKSKLICQ SVFVPPRDGFFGNPRKSKLICQATGFSPRQ R D G P R K 0 1 1 1 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0 8 0 908.41407 P01871;P0DOX6 P01871 121 128 IGHM Ig mu chain C region yes no 2 0.055026 71.715 By MS/MS 9.5 0.5 1 1 2 9369000 9369000 0 0 1723 385 1798 7535;7536 6270 6270 1 8764400 0 0 DGFGGLAAAR AAHIISELILTAQERDGFGGLAAARGRGRG TAQERDGFGGLAAARGRGRGRGDWSVGAPG R D G A R G 3 1 0 1 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 0 933.46683 Q96I24 Q96I24 328 337 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0019965 107.19 By matching By MS/MS By MS/MS 3.4 1.02 1 2 1 1 1 3 1 41041000 1137500 25097000 14806000 1724 1797 1799 7537;7538;7539;7540;7541 6271;6272 6271 2 1370600 8518400 2871700 DGFIDKEDLHDMLASLGK IQEFKEAFNMIDQNRDGFIDKEDLHDMLAS IDKEDLHDMLASLGKNPTDEYLDAMMNEAP R D G G K N 1 0 0 4 0 0 1 2 1 1 3 2 1 1 0 1 0 0 0 0 0 0 18 1 2002.967 P19105;O14950;P24844 P19105 45 62 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 3;4 0.00055012 76.704 By MS/MS 7.6 0.49 2 3 5 34904000 0 0 34904000 1725 154;652 1800;1801 7542;7543;7544;7545;7546 6273;6274;6275;6276;6277 6275 73 5 0 0 5549900 DGFIDLMELK IKDMEKMFKQYDAGRDGFIDLMELKLMMEK YDAGRDGFIDLMELKLMMEKLGAPQTHLGL R D G L K L 0 0 0 2 0 0 1 1 0 1 2 1 1 1 0 0 0 0 0 0 0 0 10 0 1179.5846 Q96C19;Q9BUP0 Q96C19 109 118 EFHD2;EFHD1 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 2 0.045505 73.985 By MS/MS By matching 6.33 0.471 2 1 1 2 10842000 0 2771000 8071400 1726 1757 1802 7547;7548;7549 6278 6278 1 0 959230 1236500 DGGTFISDADDVVSAMIVK LQRKKSMSGKRRRNRDGGTFISDADDVVSA FISDADDVVSAMIVKMNEAAEEDRQLNNQK R D G V K M 2 0 0 4 0 0 0 2 0 2 0 1 1 1 0 2 1 0 0 3 0 0 19 0 1938.9245 Q96ST2 Q96ST2 548 566 IWS1 Protein IWS1 homolog yes yes 2 0.00050354 88.075 By MS/MS 2 0 1 1 2937400 0 0 2937400 1727 1835 1803 7550 6279 6279 1 0 0 663790 DGIDDESYEAIFKPVMSK GAGKGKYYAVNYPLRDGIDDESYEAIFKPV DDESYEAIFKPVMSKVMEMFQPSAVVLQCG R D G S K V 1 0 0 3 0 0 2 1 0 2 0 2 1 1 1 2 0 0 1 1 0 0 18 1 2042.9507 Q13547 Q13547 230 247 HDAC1 Histone deacetylase 1 yes yes 3 0.0039871 60.564 By MS/MS 3.5 0.5 1 1 2 18423000 0 0 18423000 1728 1257 1804 7551;7552 6280;6281 6281 2 0 0 3149100 DGIQLSEYLPEVK SKDSIFVKILQKLLKDGIQLSEYLPEVKDL LKDGIQLSEYLPEVKDLLQADQLGSLKSNP K D G V K D 0 0 0 1 0 1 2 1 0 1 2 1 0 0 1 1 0 0 1 1 0 0 13 0 1489.7664 Q8WUM0 Q8WUM0 1111 1123 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.0033948 72.887 By MS/MS 2 0 1 1 0 0 0 0 1729 1675 1805 7553 6282 6282 1 0 0 0 DGLAFNALIHR PYKNVNVQNFHISWKDGLAFNALIHRHRPE ISWKDGLAFNALIHRHRPELIEYDKLRKDD K D G H R H 2 1 1 1 0 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 0 0 11 0 1225.6568 O43707 O43707 194 204 ACTN4 Alpha-actinin-4 no no 2;3 6.0063E-05 128.12 By MS/MS By MS/MS 2 0.632 1 3 1 3 2 53429000 0 38149000 15280000 1730 210 1806 7554;7555;7556;7557;7558 6283;6284;6285 6284 3 0 17215000 3420300 DGLEVAVLPHNIR NIGQLVDVKVLEKTKDGLEVAVLPHNIRAF TKDGLEVAVLPHNIRAFLPTSHLSDHVANG K D G I R A 1 1 1 1 0 0 1 1 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1431.7834 Q14690 Q14690 649 661 PDCD11 Protein RRP5 homolog yes yes 2 0.0063443 96.665 By MS/MS 1 0 1 1 4116400 0 0 4116400 1731 1314 1807 7559 6286 6286 1 0 0 886940 DGMAFNALIHK GYPNVNIHNFTTSWRDGMAFNALIHKHRPD TSWRDGMAFNALIHKHRPDLIDFDKLKKSN R D G H K H 2 0 1 1 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 11 0 1215.607 Q01082 Q01082 204 214 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.026085 58.676 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 14266000 0 5767100 8499000 1732 1128 1808 7560;7561;7562 6287;6288 6287 2 0 2785000 1831200 DGMDNQGGYGSVGR GGSGMGGSGMGGYGRDGMDNQGGYGSVGRM RDGMDNQGGYGSVGRMGMGNNYSGGYGTPD R D G G R M 0 1 1 2 0 1 0 5 0 0 0 0 1 0 0 1 0 0 1 1 0 0 14 0 1411.5786 P31942 P31942 288 301 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 4.9009E-89 256.48 By MS/MS By MS/MS By MS/MS 6 0.632 2 6 2 1 5 4 212400000 13458000 86899000 112040000 1733 721 1809;1810 7563;7564;7565;7566;7567;7568;7569;7570;7571;7572 6289;6290;6291;6292;6293;6294;6295;6296;6297;6298;6299 6296 318 11 17919000 30746000 16769000 DGMEYPFIGEGEPHVDGEPGDLR NEERTLEVEIEPGVRDGMEYPFIGEGEPHV GEGEPHVDGEPGDLRFRIKVVKHPIFERRG R D G L R F 0 1 0 3 0 0 4 5 1 1 1 0 1 1 3 0 0 0 1 1 0 0 23 0 2515.0962 Q9UBS4 Q9UBS4 218 240 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 3 0.00010109 68.88 By MS/MS 5 0 1 1 5521900 0 0 5521900 1734 2134 1811 7573 6300 6300 1 0 0 770210 DGNASGTTLLEALDCILPPTRPTDKPLR SANMPWFKGWKVTRKDGNASGTTLLEALDC DCILPPTRPTDKPLRLPLQDVYKIGGIGTV K D G L R L 2 2 1 3 1 0 1 2 0 1 5 1 0 0 4 1 4 0 0 0 0 0 28 2 3020.5601 Q5VTE0;P68104 Q5VTE0 220 247 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 3;4 1.3307E-20 101.47 By MS/MS 4.5 0.957 1 2 2 1 6 44628000 0 0 44628000 1735 1076 1812 7574;7575;7576;7577;7578;7579 6301;6302;6303 6303 3 0 0 6866200 DGNVLLHEMQIQHPTASLIAK MKMLVSGAGDIKLTKDGNVLLHEMQIQHPT HEMQIQHPTASLIAKVATAQDDITGDGTTS K D G A K V 2 0 1 1 0 2 1 1 2 2 3 1 1 0 1 1 1 0 0 1 0 0 21 0 2314.2104 P40227 P40227 59 79 CCT6A T-complex protein 1 subunit zeta yes yes 3 0.00016638 71.148 By MS/MS 4 0 1 1 9506900 0 9506900 0 1736 783 1813 7580 6304 6304 1 0 3155000 0 DGPGFYTTR VAVGLKQGKVIIVVKDGPGFYTTRCLAPMM VIIVVKDGPGFYTTRCLAPMMSEVIRILQE K D G T R C 0 1 0 1 0 0 0 2 0 0 0 0 0 1 1 0 2 0 1 0 0 0 9 0 1012.4614 P40939 P40939 541 549 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.065712 67.494 By MS/MS 3 0 1 1 4278000 0 0 4278000 1737 789 1814 7581 6305 6305 1 0 0 829730 DGPYITAEEAVAVYTTTVHWLESR LYLKAEQERQHNYLKDGPYITAEEAVAVYT AVAVYTTTVHWLESRRFSPIPFPPLSYKHD K D G S R R 3 1 0 1 0 0 3 1 1 1 1 0 0 0 1 1 4 1 2 3 0 0 24 0 2707.313 Q6P2Q9 Q6P2Q9 797 820 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 7.166E-05 66.868 By MS/MS 2 0 1 1 4894100 0 0 4894100 1738 1490 1815 7582 6306 6306 1 0 0 1106000 DGQAMLWDLNEGK VTVSPDGSLCASGGKDGQAMLWDLNEGKHL GKDGQAMLWDLNEGKHLYTLDGGDIINALC K D G G K H 1 0 1 2 0 1 1 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 13 0 1475.6715 P63244 P63244 213 225 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 1.3921E-05 162.38 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 42936000 0 5906800 37030000 1739 1068 1816 7583;7584;7585 6307;6308 6308 2 0 2044700 5641600 DGQILPVPNVVVR ELVPRRVAIFIEKTKDGQILPVPNVVVRDV TKDGQILPVPNVVVRDVACGANHTLVLDSQ K D G V R D 0 1 1 1 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 4 0 0 13 0 1404.8089 Q9P258 Q9P258 321 333 RCC2 Protein RCC2 yes yes 2 0.008148 91.584 By MS/MS By MS/MS 5 1.67 1 2 2 3 2 59185000 0 25282000 33904000 1740 2120 1817 7586;7587;7588;7589;7590 6309;6310;6311 6309 3 0 8740900 5592700 DGQPLAGLIQDHMVSGASMTTR AYVLACTDQQYLVPKDGQPLAGLIQDHMVS LIQDHMVSGASMTTRGCFFTREHYMELVYR K D G T R G 2 1 0 2 0 2 0 3 1 1 2 0 2 0 1 2 2 0 0 1 0 0 22 0 2284.094 O95602 O95602 623 644 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.0029731 50.029 By MS/MS 1 0 1 1 1853500 0 1853500 0 1741 330 1818 7591 6312 6312 1 0 905960 0 DGQVINETSQHHDDLE THSKRTLLIKTVETRDGQVINETSQHHDDL GQVINETSQHHDDLE_______________ R D G L E - 0 0 1 3 0 2 2 1 2 1 1 0 0 0 0 1 1 0 0 1 0 0 16 0 1835.7922 P08670 P08670 451 466 VIM Vimentin yes yes 2;3 1.3934E-46 219.74 By MS/MS By MS/MS By MS/MS 4.69 2.41 5 5 8 11 8 5 3 4 3 2 15 13 26 8294200000 1604200000 257070000 6433000000 1742 476 1819 7592;7593;7594;7595;7596;7597;7598;7599;7600;7601;7602;7603;7604;7605;7606;7607;7608;7609;7610;7611;7612;7613;7614;7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630;7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641;7642;7643;7644;7645 6313;6314;6315;6316;6317;6318;6319;6320;6321;6322;6323;6324;6325;6326;6327;6328;6329;6330;6331;6332;6333;6334;6335;6336;6337;6338;6339;6340;6341;6342;6343;6344;6345;6346;6347;6348;6349;6350;6351;6352;6353;6354;6355;6356;6357;6358;6359;6360;6361;6362;6363;6364;6365;6366;6367 6318 55 1263200000 91427000 1081700000 DGQYILATGTYKPR DFEMPTVCTTIKVSKDGQYILATGTYKPRV KDGQYILATGTYKPRVRCYDTYQLSLKFER K D G P R V 1 1 0 1 0 1 0 2 0 1 1 1 0 0 1 0 2 0 2 0 0 0 14 1 1581.8151 Q9BSC4 Q9BSC4 63 76 NOL10 Nucleolar protein 10 yes yes 2 0.0029739 129 By MS/MS 3 0 1 1 5688700 0 0 5688700 1743 1895 1820 7646 6368 6368 1 0 0 1103300 DGSLASNPYSGDLTK YSIPFPTPTTPLTGRDGSLASNPYSGDLTK DGSLASNPYSGDLTKFGRGDASSPAPATTL R D G T K F 1 0 1 2 0 0 0 2 0 0 2 1 0 0 1 3 1 0 1 0 0 0 15 0 1523.7104 Q14157 Q14157 850 864 UBAP2L Ubiquitin-associated protein 2-like yes yes 2 0.0006679 101.89 By MS/MS 2 0 1 1 2765300 0 2765300 0 1744 1287 1821 7647 6369 6369 1 0 1245200 0 DGTAGIPNLQLYDVK KNTVLATWQPYTTSKDGTAGIPNLQLYDVK DGTAGIPNLQLYDVKTGTCLKSFIQKKMQN K D G V K T 1 0 1 2 0 1 0 2 0 1 2 1 0 0 1 0 1 0 1 1 0 0 15 0 1602.8253 Q9BY44 Q9BY44 101 115 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 2 0.0019679 91.313 By matching By MS/MS 2.5 0.5 1 1 1 1 10011000 0 1683400 8327200 1745 1932 1822 7648;7649 6370 6370 1 0 758070 1615100 DGTGVVEFVR HMREAGDVCYADVYRDGTGVVEFVRKEDMT ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK R D G V R K 0 1 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 3 0 0 10 0 1077.5455 Q07955 Q07955 155 164 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 2.8431E-22 189 By MS/MS By MS/MS By MS/MS 5.3 1.68 1 1 2 4 2 3 3 4 497170000 20908000 121280000 354990000 1746 1179 1823 7650;7651;7652;7653;7654;7655;7656;7657;7658;7659 6371;6372;6373;6374;6375;6376;6377;6378;6379 6376 9 25585000 44638000 54015000 DGTGVVEFVRK HMREAGDVCYADVYRDGTGVVEFVRKEDMT DVYRDGTGVVEFVRKEDMTYAVRKLDNTKF R D G R K E 0 1 0 1 0 0 1 2 0 0 0 1 0 1 0 0 1 0 0 3 0 0 11 1 1205.6404 Q07955 Q07955 155 165 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 0.042055 81.95 By MS/MS 6 0 1 1 3803300 0 3803300 0 1747 1179 1824 7660 6380 6380 1 0 1316600 0 DGVGMVEYLR HMREAGDVCYADVQKDGVGMVEYLRKEDME ADVQKDGVGMVEYLRKEDMEYALRKLDDTK K D G L R K 0 1 0 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 1 2 0 0 10 0 1137.5488 Q13242 Q13242 145 154 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.00013389 144.09 By matching By MS/MS By MS/MS 7 0.535 1 5 1 1 2 4 187800000 1719100 20187000 165900000 1748 1232 1825 7661;7662;7663;7664;7665;7666;7667 6381;6382;6383;6384;6385 6383 5 3705000 11592000 28703000 DGVLTLANNVTPAK EDQVPALKTEAPLAKDGVLTLANNVTPAKD KDGVLTLANNVTPAKDVPPLSETEATPVPI K D G A K D 2 0 2 1 0 0 0 1 0 0 2 1 0 0 1 0 2 0 0 2 0 0 14 0 1411.7671 P27816 P27816 561 574 MAP4 Microtubule-associated protein 4 yes yes 2 0.048072 64.86 By matching By MS/MS 2 0 2 1 1 20176000 1862500 0 18314000 1749 683 1826 7668;7669 6386 6386 1 2244100 0 4138500 DGVPEGAQLQGPVHR PHPNRIQAGEIGEMKDGVPEGAQLQGPVHR DGVPEGAQLQGPVHRNPTYRPRYRSRGPPR K D G H R N 1 1 0 1 0 2 1 3 1 0 1 0 0 0 2 0 0 0 0 2 0 0 15 0 1558.7852 P16989 P16989 269 283 YBX3 Y-box-binding protein 3 yes yes 2 0.00028709 137.46 By matching By MS/MS By MS/MS 3.71 1.03 1 2 2 2 2 3 2 74387000 21771000 20289000 32328000 1750 581 1827 7670;7671;7672;7673;7674;7675;7676 6387;6388;6389;6390 6387 4 26038000 6597000 5049000 DGVTLYLLQSVNQLLLTATK SRKEITCDNFDETVKDGVTLYLLQSVNQLL YLLQSVNQLLLTATKERIDFLPHYDTLVKS K D G T K E 1 0 1 1 0 2 0 1 0 0 6 1 0 0 0 1 3 0 1 2 0 0 20 0 2189.2307 A6NHR9 A6NHR9 93 112 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 8.7723E-05 79.466 By MS/MS 1.5 0.5 1 1 2 1123500 0 0 1123500 1751 15 1828 7677;7678 6391 6391 1 0 0 244210 DGVWNLQNEVTK ILPKCRTSYEEFTHKDGVWNLQNEVTKERT THKDGVWNLQNEVTKERTAQCFLRVDDESM K D G T K E 0 0 2 1 0 1 1 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 12 0 1401.6888 Q6P2Q9 Q6P2Q9 1211 1222 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0049326 103.34 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 49908000 0 17771000 32137000 1752 1490 1829 7679;7680;7681 6392;6393 6393 2 0 8686100 6971700 DGWGGYGSDKR PERHGGPERHGRDSRDGWGGYGSDKRMSEG RDSRDGWGGYGSDKRMSEGRGLPPPPRRDW R D G K R M 0 1 0 2 0 0 0 4 0 0 0 1 0 0 0 1 0 1 1 0 0 0 11 1 1196.521 Q14151;Q15424 Q15424 796 806 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2 0.0031877 109.42 By MS/MS By matching 2.5 0.5 1 1 1 1 9617000 0 5493200 4123900 1753 1364;1285 1830 7682;7683 6394 6394 1 0 2473600 799830 DGYDYDGYR EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG R D G Y R L 0 1 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 3 0 0 0 9 0 1122.4254 Q07955 Q07955 75 83 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 6.8965E-17 182.09 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 77970000 0 7735500 70234000 1754 1179 1831 7684;7685;7686 6395;6396 6396 2 0 2677800 10766000 DGYVLSLNR DIANDILQDINRDRKDGYVLSLNRVSDARE INRDRKDGYVLSLNRVSDAREHRQEAGLGS K D G N R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1035.5349 CON__Q58D62 CON__Q58D62 58 66 yes yes 2 0.0017174 107.01 By MS/MS By matching 3.67 0.471 1 2 2 1 19326000 16967000 0 2359000 + 1755 89 1832 7687;7688;7689 6397 6397 1 15389000 0 385310 DHASIQMNVAEVDK VPRKCSASNRIIGAKDHASIQMNVAEVDKV KDHASIQMNVAEVDKVTGRFNGQFKTYAIC K D H D K V 2 0 1 2 0 1 1 0 1 1 0 1 1 0 0 1 0 0 0 2 0 0 14 0 1555.7301 P63220 P63220 28 41 RPS21 40S ribosomal protein S21 yes yes 2;3 1.5323E-126 276.47 By MS/MS By MS/MS 9.78 0.416 2 7 3 6 59777000 0 6695000 53082000 1756 1066 1833;1834 7690;7691;7692;7693;7694;7695;7696;7697;7698 6398;6399;6400;6401;6402;6403;6404 6401 511 7 0 33871000 92116000 DHASIQMNVAEVDKVTGR VPRKCSASNRIIGAKDHASIQMNVAEVDKV SIQMNVAEVDKVTGRFNGQFKTYAICGAIR K D H G R F 2 1 1 2 0 1 1 1 1 1 0 1 1 0 0 1 1 0 0 3 0 0 18 1 1968.9687 P63220 P63220 28 45 RPS21 40S ribosomal protein S21 yes yes 3;4 6.5106E-10 154.49 By MS/MS By matching 10 0 6 4 2 38522000 0 31527000 6994900 1757 1066 1835;1836 7699;7700;7701;7702;7703;7704 6405;6406;6407;6408;6409 6407 511 5 0 159500000 15299000 DHAVVVGVYRPPPK NMKPQEQLTLEPYERDHAVVVGVYRPPPKV RDHAVVVGVYRPPPKVKN____________ R D H P K V 1 1 0 1 0 0 0 1 1 0 0 1 0 0 3 0 0 0 1 4 0 0 14 1 1532.8463 P22087 P22087 305 318 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2;3 5.4012E-19 143.55 By MS/MS By MS/MS 5 1.69 1 1 2 3 5 2 4 10 278740000 0 62806000 215940000 1758 627 1837 7705;7706;7707;7708;7709;7710;7711;7712;7713;7714;7715;7716;7717;7718 6410;6411;6412;6413;6414;6415;6416;6417;6418;6419;6420;6421;6422 6421 13 0 22028000 32679000 DHFQLGTLSHTLNIK AQKPAPLLESPFKDRDHFQLGTLSHTLNIK DHFQLGTLSHTLNIKATGYLELSNWPEVAP R D H I K A 0 0 1 1 0 1 0 1 2 1 3 1 0 1 0 1 2 0 0 0 0 0 15 0 1722.9053 O00203 O00203 615 629 AP3B1 AP-3 complex subunit beta-1 yes yes 3 6.1308E-05 134.25 By MS/MS 2.5 0.5 1 1 2 13384000 0 0 13384000 1759 111 1838 7719;7720 6423 6423 1 0 0 2934000 DHGLEVLGLVR LEQLHAVEISAVHSRDHGLEVLGLVRVPLY VHSRDHGLEVLGLVRVPLYTQKDRVGGFPN R D H V R V 0 1 0 1 0 0 1 2 1 0 3 0 0 0 0 0 0 0 0 2 0 0 11 0 1206.6721 Q9BRJ7;Q96DE0 Q9BRJ7 134 144 NUDT16L1;NUDT16 Protein syndesmos;U8 snoRNA-decapping enzyme yes no 2;3 0.00012351 117.7 By matching By MS/MS By MS/MS 6.14 1.12 1 1 1 4 3 2 2 22675000 5940100 3057800 13678000 1760 1890 1839 7721;7722;7723;7724;7725;7726;7727 6424;6425;6426 6426 3 5264900 1755800 2427000 DHIKDEWEGLR PTRVRADVTINLNVRDHIKDEWEGLRKHDV LNVRDHIKDEWEGLRKHDVCFLITVRPTKP R D H L R K 0 1 0 2 0 0 2 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 11 1 1396.6735 O60306 O60306 547 557 AQR Intron-binding protein aquarius yes yes 3 0.031794 59.198 By MS/MS 1.5 0.5 1 1 2 14060000 0 0 14060000 1761 225 1840 7728;7729 6427 6427 1 0 0 3121200 DHIMEIFSTYGK PTKVHIGRLTRNVTKDHIMEIFSTYGKIKM VTKDHIMEIFSTYGKIKMIDMPVERMHPHL K D H G K I 0 0 0 1 0 0 1 1 1 2 0 1 1 1 0 1 1 0 1 0 0 0 12 0 1439.6755 Q15287 Q15287 175 186 RNPS1 RNA-binding protein with serine-rich domain 1 yes yes 2;3 5.7426E-08 167.09 By MS/MS By MS/MS 4.31 1.64 1 1 2 2 4 2 1 1 12 229070000 0 26855000 202220000 1762 1353 1841;1842 7730;7731;7732;7733;7734;7735;7736;7737;7738;7739;7740;7741;7742 6428;6429;6430;6431;6432;6433;6434 6428 619 7 0 6922400 30546000 DHINDIIK HQARKRYRDRLQYFRDHINDIIKIQAFIRA DRLQYFRDHINDIIKIQAFIRANKARDDYK R D H I K I 0 0 1 2 0 0 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 0 8 0 966.51345 P46940 P46940 834 841 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 7.094E-05 148.99 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 21480000 0 11503000 9976600 1763 835 1843 7743;7744;7745 6435;6436 6436 2 0 5179900 2209200 DHLVTAYNHLFETK KLLGNIKNVAKTANKDHLVTAYNHLFETKR KDHLVTAYNHLFETKRFKGTESISKVSEQV K D H T K R 1 0 1 1 0 0 1 0 2 0 2 1 0 1 0 0 2 0 1 1 0 0 14 0 1686.8366 Q00688 Q00688 57 70 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2;3 4.3068E-17 187.35 By MS/MS 6.33 0.471 2 1 3 42265000 0 0 42265000 1764 1126 1844 7746;7747;7748 6437;6438;6439 6438 3 0 0 6590700 DHQYQFLEDAVR CDTLTCRDCQLNAHKDHQYQFLEDAVRNQR AHKDHQYQFLEDAVRNQRKLLASLVKRLGD K D H V R N 1 1 0 2 0 2 1 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 12 0 1519.7056 Q13263 Q13263 239 250 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 9.722E-46 223.87 By matching By MS/MS 3.5 1.71 2 2 2 2 2 2 1 11 133500000 0 1011200 132490000 1765 1235 1845 7749;7750;7751;7752;7753;7754;7755;7756;7757;7758;7759;7760 6440;6441;6442;6443;6444;6445;6446 6446 6 0 494260 25312000 DHSVQLPKPVHKPNR PLMSESTSNIDQGPRDHSVQLPKPVHKPNR DHSVQLPKPVHKPNRWCFYSSCEQLDQLIE R D H N R W 0 1 1 1 0 1 0 0 2 0 1 2 0 0 3 1 0 0 0 2 0 0 15 2 1750.9591 Q9NRL2 Q9NRL2 877 891 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 4 0.0091222 63.292 By MS/MS 1.5 0.5 1 1 2 5740000 0 0 5740000 1766 2045 1846 7761;7762 6447 6447 1 0 0 1252900 DHTLVQTIAR LKFIDPFCKIAAKTKDHTLVQTIARGVFEA AAKTKDHTLVQTIARGVFEAIVDQSPFVPE K D H A R G 1 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1152.6251 Q14684 Q14684 205 214 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.043656 74.464 By MS/MS 2 0.816 1 1 1 3 13457000 0 0 13457000 1767 1313 1847 7763;7764;7765 6448 6448 1 0 0 2817600 DHYIFYCEGELHGK DGGKHVAYIIRSHVKDHYIFYCEGELHGKP KDHYIFYCEGELHGKPVRGVKLVGRDPKNN K D H G K P 0 0 0 1 1 0 2 2 2 1 1 1 0 1 0 0 0 0 2 0 0 0 14 0 1766.7723 P31025 P31025 113 126 LCN1 Lipocalin-1 yes yes 3 0.015593 57.328 By MS/MS 8 0 1 1 3525500 3525500 0 0 1768 716 1848 7766 6449 6449 1 3026800 0 0 DHYIFYCEGELHGKPVR DGGKHVAYIIRSHVKDHYIFYCEGELHGKP YIFYCEGELHGKPVRGVKLVGRDPKNNLEA K D H V R G 0 1 0 1 1 0 2 2 2 1 1 1 0 1 1 0 0 0 2 1 0 0 17 1 2118.9945 P31025 P31025 113 129 LCN1 Lipocalin-1 yes yes 4 1.7647E-06 140.74 By MS/MS 6.5 2.29 1 1 1 1 1 1 1 1 8 82102000 82102000 0 0 1769 716 1849 7767;7768;7769;7770;7771;7772;7773;7774 6450;6451;6452 6451 3 70962000 0 0 DIAPTLTLYVGK AKNLFLNHSENATAKDIAPTLTLYVGKKQL TAKDIAPTLTLYVGKKQLVEIEKVVLHPNY K D I G K K 1 0 0 1 0 0 0 1 0 1 2 1 0 0 1 0 2 0 1 1 0 0 12 0 1289.7231 P00738;P00739 P00738 216 227 HP;HPR Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain;Haptoglobin-related protein yes no 2 0.0083828 96.89 By MS/MS By matching 6.2 4.26 2 1 2 3 2 29930000 28279000 0 1650300 1770 364 1850 7775;7776;7777;7778;7779 6453;6454 6453 2 23042000 0 840030 DIAPTLTLYVGKK AKNLFLNHSENATAKDIAPTLTLYVGKKQL AKDIAPTLTLYVGKKQLVEIEKVVLHPNYS K D I K K Q 1 0 0 1 0 0 0 1 0 1 2 2 0 0 1 0 2 0 1 1 0 0 13 1 1417.8181 P00738;P00739 P00738 216 228 HP;HPR Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain;Haptoglobin-related protein yes no 2 0.049789 64.297 By MS/MS By matching 9.5 0.5 1 1 1 1 2524400 1753300 0 771100 1771 364 1851 7780;7781 6455 6455 0 984130 0 1686500 DIASGLIGPLIICK NCVTRIYHSHIDAPKDIASGLIGPLIICKK KDIASGLIGPLIICKKDSLDKEKEKHIDRE K D I C K K 1 0 0 1 1 0 0 2 0 4 2 1 0 0 1 1 0 0 0 0 0 0 14 0 1468.8323 P00450 P00450 188 201 CP Ceruloplasmin yes yes 2 0.024899 72.006 By MS/MS 9 0 1 1 1214100 1214100 0 0 1772 360 1852 7782 6456 6456 1 681500 0 0 DIAVVSPYNLQVDLLR SLHIQALVDAGVPARDIAVVSPYNLQVDLL IAVVSPYNLQVDLLRQSLVHRHPELEIKSV R D I L R Q 1 1 1 2 0 1 0 0 0 1 3 0 0 0 1 1 0 0 1 3 0 0 16 0 1813.9938 P38935 P38935 534 549 IGHMBP2 DNA-binding protein SMUBP-2 yes yes 2 5.5332E-05 110.38 By MS/MS 2 0 1 1 996390 0 996390 0 1773 776 1853 7783 6457 6457 1 0 448690 0 DICNDVLSLLEK QMAREYREKIETELRDICNDVLSLLEKFLI ELRDICNDVLSLLEKFLIPNASQAESKVFY R D I E K F 0 0 1 2 1 0 1 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 12 0 1417.7123 P63104 P63104 92 103 YWHAZ 14-3-3 protein zeta/delta yes yes 2 0.020128 84.658 By MS/MS 7 0 1 1 3703300 0 0 3703300 1774 1059 1854 7784 6458 6458 1 0 0 657130 DIDAFWLQR SGELMSSKKKDLHPRDIDAFWLQRQLSRFY KDLHPRDIDAFWLQRQLSRFYDDAIVSQKK R D I Q R Q 1 1 0 2 0 1 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 9 0 1162.5771 O75643 O75643 262 270 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 2.7681E-23 186.43 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 44218000 0 5560600 38657000 1775 277 1855 7785;7786;7787;7788 6459;6460;6461 6460 3 0 2718000 8347000 DIDIHEVR MKVTEKIPVRHLYTKDIDIHEVRIGWSLTT VRHLYTKDIDIHEVRIGWSLTTSGMLLGEE K D I V R I 0 1 0 2 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 8 0 995.50361 Q00839 Q00839 353 360 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 0.001359 116.9 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 304040000 0 95409000 208630000 1776 1127 1856 7789;7790;7791;7792;7793;7794;7795 6462;6463;6464;6465;6466;6467 6463 6 0 42555000 44007000 DIDNNLITSTPR KEERENPSKRSRIERDIDNNLITSTPRAGE IERDIDNNLITSTPRAGEKPNKQISRVRRK R D I P R A 0 1 2 2 0 0 0 0 0 2 1 0 0 0 1 1 2 0 0 0 0 0 12 0 1357.6838 Q05D32 Q05D32 77 88 CTDSPL2 CTD small phosphatase-like protein 2 yes yes 2 0.0001486 136.02 By MS/MS 4 0 1 1 30410000 0 30410000 0 1777 1167 1857 7796 6468 6468 1 0 10092000 0 DIDPQNDLTFLR SLMHSFILKARSTVRDIDPQNDLTFLRIRS TVRDIDPQNDLTFLRIRSKKNEIMVAPDKD R D I L R I 0 1 1 3 0 1 0 0 0 1 2 0 0 1 1 0 1 0 0 0 0 0 12 0 1445.7151 Q9NP97;Q8TF09 Q9NP97 59 70 DYNLRB1;DYNLRB2 Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2 yes no 2 0.009771 94.692 By MS/MS By MS/MS 10 0 2 1 1 7860300 0 6613600 1246700 1778 2022 1858 7797;7798 6469;6470 6469 2 0 33459000 2726700 DIDVLNSSGK LSKMQREWYTKILMKDIDVLNSSGKMDKMR KILMKDIDVLNSSGKMDKMRLLNILMQLRK K D I G K M 0 0 1 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 0 1 0 0 10 0 1046.5244 P28370 P28370 434 443 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.045505 73.985 By MS/MS 2 0 1 1 8050100 0 8050100 0 1779 693 1859 7799 6471 6471 1 0 3625100 0 DIELVMSQANVSR ESEEEEVDETGVEVKDIELVMSQANVSRAK VKDIELVMSQANVSRAKAVRALKNNSNDIV K D I S R A 1 1 1 1 0 1 1 0 0 1 1 0 1 0 0 2 0 0 0 2 0 0 13 0 1460.7293 E9PAV3;Q13765 E9PAV3 2043 2055 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 2 1.4276E-24 198.62 By MS/MS By MS/MS 6.33 0.943 1 3 1 1 1 5 62821000 0 5247200 57574000 1780 102 1860;1861 7800;7801;7802;7803;7804;7805 6472;6473;6474 6473 65 3 0 1816400 8845600 DIENQYETQITQIEHEVSSSGQEVQSSAK DMRQEYEQLIAKNRKDIENQYETQITQIEH HEVSSSGQEVQSSAKEVTQLRHGVQELEIE K D I A K E 1 0 1 1 0 5 5 1 1 3 0 1 0 0 0 5 2 0 1 2 0 0 29 0 3263.5066 P35527;CON__P35527 P35527 340 368 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3;4 0 486.58 By MS/MS By MS/MS By MS/MS 4.69 2.48 6 3 5 7 6 5 2 4 4 14 7 21 2606100000 1416600000 68223000 1121300000 + 1781 750 1862 7806;7807;7808;7809;7810;7811;7812;7813;7814;7815;7816;7817;7818;7819;7820;7821;7822;7823;7824;7825;7826;7827;7828;7829;7830;7831;7832;7833;7834;7835;7836;7837;7838;7839;7840;7841;7842;7843;7844;7845;7846;7847 6475;6476;6477;6478;6479;6480;6481;6482;6483;6484;6485;6486;6487;6488;6489;6490;6491;6492;6493;6494;6495;6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508;6509;6510;6511;6512;6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523;6524;6525 6506 51 1114300000 28994000 212240000 DIEQIIR GLGLDVERVNKIAKRDIEQIIRNYARSESH RVNKIAKRDIEQIIRNYARSESHTDLTFSR R D I I R N 0 1 0 1 0 1 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 7 0 885.49198 O15226 O15226 605 611 NKRF NF-kappa-B-repressing factor yes yes 2 0.042877 80.555 By MS/MS By matching 2.5 0.5 1 1 1 1 4212900 0 1704600 2508300 1782 174 1863 7848;7849 6526 6526 1 0 767620 486490 DIFMFITR IYAPEAPYTSPDKLKDIFMFITRQLKGLED TSPDKLKDIFMFITRQLKGLEDTKSPQFNR K D I T R Q 0 1 0 1 0 0 0 0 0 2 0 0 1 2 0 0 1 0 0 0 0 0 8 0 1041.5317 Q9NTI5 Q9NTI5 105 112 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.00063518 127.12 By MS/MS 2 0.816 1 1 1 3 11579000 0 0 11579000 1783 2053 1864 7850;7851;7852 6527;6528 6527 2 0 0 2541600 DIFPYSENK IFFFGTHETAFLGPKDIFPYSENKEKYGKP AFLGPKDIFPYSENKEKYGKPNKRKGFNEG K D I N K E 0 0 1 1 0 0 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 0 9 0 1111.5186 O75475 O75475 57 65 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.05583 69.825 By matching By MS/MS 5 1.41 1 1 1 1 1 1 4 44575000 0 2314700 42260000 1784 262 1865 7853;7854;7855;7856;7857 6529 6529 1 0 986770 6512800 DIGEGNLSTAAAAALAAAAVK EVVESEGERKTKVERDIGEGNLSTAAAAAL LSTAAAAALAAAAVKAKHLAAVEERKIKSL R D I V K A 9 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 1 0 0 1 0 0 21 0 1883.9953 Q8TAQ2 Q8TAQ2 852 872 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 2;3 1.5168E-13 139.3 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 73940000 0 15294000 58646000 1785 1653 1866 7858;7859;7860;7861;7862;7863;7864;7865 6530;6531;6532;6533;6534;6535;6536;6537 6535 8 0 6968700 12927000 DIHLDLPSNNNLVSK SGGSEADIEGPLPAKDIHLDLPSNNNLVSK DIHLDLPSNNNLVSKDTEEPLPVKESDQTL K D I S K D 0 0 3 2 0 0 0 0 1 1 3 1 0 0 1 2 0 0 0 1 0 0 15 0 1677.8686 P18583 P18583 1663 1677 SON Protein SON yes yes 3 0.0011691 80.706 By MS/MS By MS/MS 1 0 2 1 1 10895000 0 5593500 5301200 1786 596 1867 7866;7867 6538;6539 6538 2 0 2734000 1142200 DIICQIAYAR YNTPKYRMIVRVTNRDIICQIAYARIEGDM RVTNRDIICQIAYARIEGDMIVCAAYAHEL R D I A R I 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1221.6176 P46777 P46777 59 68 RPL5 60S ribosomal protein L5 yes yes 2 0.0026972 104.75 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 61692000 0 5935800 55756000 1787 828 1868 7868;7869;7870 6540;6541;6542 6540 3 0 2054800 8281000 DIIDTPMDFATVR PFRQPVDLLEYPDYRDIIDTPMDFATVRET YRDIIDTPMDFATVRETLEAGNYESPMELC R D I V R E 1 1 0 3 0 0 0 0 0 2 0 0 1 1 1 0 2 0 0 1 0 0 13 0 1492.7232 Q8WWQ0 Q8WWQ0 1355 1367 PHIP PH-interacting protein yes yes 2 1.9268E-07 169.65 By MS/MS 1 0 1 1 9626100 0 0 9626100 1788 1690 1869 7871 6543 6543 1 0 0 2074100 DIIGLAETGSGK TKIQIEAIPLALQGRDIIGLAETGSGKTGA QGRDIIGLAETGSGKTGAFALPILNALLET R D I G K T 1 0 0 1 0 0 1 3 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1159.6085 Q9H0S4 Q9H0S4 63 74 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.020128 84.658 By MS/MS 4 0 1 1 9087200 0 9087200 0 1789 1964 1870 7872 6544 6544 1 0 3015700 0 DIIGVAETGSGK TPIQRQAIPIGLQNRDIIGVAETGSGKTAA QNRDIIGVAETGSGKTAAFLIPLLVWITTL R D I G K T 1 0 0 1 0 0 1 3 0 2 0 1 0 0 0 1 1 0 0 1 0 0 12 0 1145.5928 Q9BUQ8 Q9BUQ8 430 441 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.00018302 133.23 By MS/MS By matching 2.5 0.5 1 1 1 1 24633000 0 10530000 14103000 1790 1909 1871 7873;7874 6545 6545 1 0 4741900 2735200 DIIHDPGR VDFAERHGYIKGIVKDIIHDPGRGAPLAKV YIKGIVKDIIHDPGRGAPLAKVVFRDPYRF K D I G R G 0 1 0 2 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 8 0 921.46683 P62917 P62917 47 54 RPL8 60S ribosomal protein L8 yes yes 2 0.0048646 100.19 By matching By MS/MS 6.33 0.471 2 1 1 2 166940000 0 31584000 135360000 1791 1052 1872 7875;7876;7877 6546;6547 6546 2 0 10933000 21257000 DIILDNPTLTLEVLNEAR AVCKVPDESEVVVERDIILDNPTLTLEVLN LDNPTLTLEVLNEARVRKPVNVQMLFSNPL R D I A R V 1 1 2 2 0 0 2 0 0 2 4 0 0 0 1 0 2 0 0 1 0 0 18 0 2038.0946 Q08188 Q08188 589 606 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 1.1616E-05 107.14 By MS/MS 5 0 1 1 560620 560620 0 0 1792 1181 1873 7878 6548 6548 1 449130 0 0 DIILGMEISAPSQQR KNNVNVASLTQSEIRDIILGMEISAPSQQR DIILGMEISAPSQQRQQIAEIEKQTKEQSQ R D I Q R Q 1 1 0 1 0 2 1 1 0 3 1 0 1 0 1 2 0 0 0 0 0 0 15 0 1656.8505 Q6P2Q9 Q6P2Q9 2009 2023 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00029839 120.96 By MS/MS By MS/MS 1 0 2 1 1 10868000 0 3488400 7379900 1793 1490 1874 7879;7880 6549;6550 6549 2 0 1705100 1590100 DIILQSNPLLEAFGNAK ISKVSGGGEKVQHVKDIILQSNPLLEAFGN ILQSNPLLEAFGNAKTVRNNNSSRFGKYFE K D I A K T 2 0 2 1 0 1 1 1 0 2 3 1 0 1 1 1 0 0 0 0 0 0 17 0 1841.9887 O00160;Q12965 O00160 142 158 MYO1F;MYO1E Unconventional myosin-If;Unconventional myosin-Ie yes no 2 7.8415E-06 127.37 By MS/MS 2 0 1 1 1637100 0 1637100 0 1794 107 1875 7881 6551 6551 1 0 737220 0 DIISDTSGDFR INRVYKEMYKTDLEKDIISDTSGDFRKLMV DLEKDIISDTSGDFRKLMVALAKGRRAEDG K D I F R K 0 1 0 3 0 0 0 1 0 2 0 0 0 1 0 2 1 0 0 0 0 0 11 0 1224.5622 P07355;A6NMY6 P07355 158 168 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 0.025139 81.338 By MS/MS 5 0 1 1 5447800 5447800 0 0 1795 459 1876 7882 6552 6552 1 4364400 0 0 DIISDTSGDFRK INRVYKEMYKTDLEKDIISDTSGDFRKLMV LEKDIISDTSGDFRKLMVALAKGRRAEDGS K D I R K L 0 1 0 3 0 0 0 1 0 2 0 1 0 1 0 2 1 0 0 0 0 0 12 1 1352.6572 P07355;A6NMY6 P07355 158 169 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 0.00011518 142.98 By MS/MS By matching By MS/MS 7 1.41 2 1 1 1 1 30451000 2923900 2848800 24678000 1796 459 1877 7883;7884;7885 6553;6554 6554 2 1641200 986160 3692100 DIKPDNFLMGIGR ISRIEYVHTKNFIHRDIKPDNFLMGIGRHC HRDIKPDNFLMGIGRHCNKLFLIDFGLAKK R D I G R H 0 1 1 2 0 0 0 2 0 2 1 1 1 1 1 0 0 0 0 0 0 0 13 1 1474.7602 P48729 P48729 136 148 CSNK1A1 Casein kinase I isoform alpha yes yes 3 0.0027807 85.973 By matching By MS/MS By MS/MS 5.25 0.829 1 1 2 1 1 2 15347000 2284100 2732200 10331000 1797 847 1878 7886;7887;7888;7889 6555;6556 6556 2 1782000 945800 1514900 DIKPENLLLGLK ADALMYCHGKKVIHRDIKPENLLLGLKGEL IHRDIKPENLLLGLKGELKIADFGWSVHAP R D I L K G 0 0 1 1 0 0 1 1 0 1 4 2 0 0 1 0 0 0 0 0 0 0 12 1 1351.8075 Q96GD4 Q96GD4 200 211 AURKB Aurora kinase B yes yes 3 0.00017213 120.96 By matching By MS/MS 6.33 0.471 2 1 1 2 10216000 0 1472600 8743300 1798 1790 1879 7890;7891;7892 6557 6557 1 0 509770 1331300 DIKPIIKDEK SEGADQKMSSFKEEKDIKPIIKDEKGRVGS FKEEKDIKPIIKDEKGRVGSGSGRNLWVSG K D I E K G 0 0 0 2 0 0 1 0 0 3 0 3 0 0 1 0 0 0 0 0 0 0 10 2 1197.6969 Q14151 Q14151 389 398 SAFB2 Scaffold attachment factor B2 yes yes 3 0.00019986 115.39 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 26085000 0 7051300 19034000 1799 1285 1880 7893;7894;7895;7896 6558;6559;6560 6559 3 0 3175300 4067300 DIKPQLELIEDEEK KDFEELKAEEVDVTKDIKPQLELIEDEEKL KDIKPQLELIEDEEKLKETEPVEAYVIQKE K D I E K L 0 0 0 2 0 1 4 0 0 2 2 2 0 0 1 0 0 0 0 0 0 0 14 1 1697.8723 P46821 P46821 853 866 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.00071112 96.247 By MS/MS 1 0 1 1 5594500 0 0 5594500 1800 834 1881 7897 6561 6561 1 0 0 1205400 DILCGAADEVLAVLK VLLSFIQAALGDQPRDILCGAADEVLAVLK DILCGAADEVLAVLKNEKLRDKERRKEIDL R D I L K N 3 0 0 2 1 0 1 1 0 1 3 1 0 0 0 0 0 0 0 2 0 0 15 0 1585.8385 O75643 O75643 130 144 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.039088 43.184 By MS/MS 1 0 1 1 531510 0 0 531510 1801 277 1882 7898 6562 6562 1 0 0 114520 DILIQYDR YYQKYVDEASKKEIKDILIQYDRTLLVADP ASKKEIKDILIQYDRTLLVADPRRCESKKF K D I D R T 0 1 0 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1034.5397 P62249 P62249 110 117 RPS16 40S ribosomal protein S16 yes yes 2 0.00066657 126.67 By matching By MS/MS 8.75 0.829 2 1 1 1 3 60518000 0 5100100 55418000 1802 1010 1883 7899;7900;7901;7902 6563;6564 6563 2 0 2320400 17760000 DILLQGLK KLLDYTEKPLYENLRDILLQGLKAIGSKDD PLYENLRDILLQGLKAIGSKDDGKLDLSVV R D I L K A 0 0 0 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 8 0 898.54877 Q99986 Q99986 322 329 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2 0.016198 87.284 By MS/MS By MS/MS By MS/MS 3.57 1.5 1 1 1 1 3 1 1 5 78720000 3914300 17671000 57134000 1803 1871 1884 7903;7904;7905;7906;7907;7908;7909 6565;6566;6567;6568 6568 4 3135800 4555100 8300100 DILLVNDHLLNFVR IRHDVIVSIVTAAKKDILLVNDHLLNFVRE KDILLVNDHLLNFVRERTLDKRWRVRKEAM K D I V R E 0 1 2 2 0 0 0 0 1 1 4 0 0 1 0 0 0 0 0 2 0 0 14 0 1679.9359 Q9NTI5 Q9NTI5 381 394 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 2.9652E-11 176.95 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 39741000 0 0 39741000 1804 2053 1885 7910;7911;7912;7913;7914 6569;6570;6571;6572;6573 6573 5 0 0 8800800 DILQNVFK AAWNKEDFPWSGKVKDILQNVFKLEKFRPL PWSGKVKDILQNVFKLEKFRPLQLETINVT K D I F K L 0 0 1 1 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 975.53893 P46063 P46063 81 88 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.02066 83.801 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 14880000 0 2776100 12104000 1805 823 1886 7915;7916;7917 6574;6575 6574 2 0 1183500 2294500 DILSQLGIK LRLPRFSISSHYQLKDILSQLGIKKIFTSD SHYQLKDILSQLGIKKIFTSDAGFSGITDD K D I I K K 0 0 0 1 0 1 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 9 0 985.5808 CON__A2I7N3;CON__REFSEQ:XP_001252647 CON__A2I7N3 322 330 yes no 2 0.0093301 89.296 By MS/MS By MS/MS By matching 5.33 1.11 2 1 2 1 3 1 2 14768000 8887100 4252800 1628200 + 1806 23 1887 7918;7919;7920;7921;7922;7923 6576;6577 6576 2 7607500 1411400 267880 DILSWVNFMNK LTHQEFGRKCVVSIRDILSWVNFMNKMGEE VSIRDILSWVNFMNKMGEEAALKRPEIIST R D I N K M 0 0 2 1 0 0 0 0 0 1 1 1 1 1 0 1 0 1 0 1 0 0 11 0 1365.6751 Q9NU22 Q9NU22 1604 1614 MDN1 Midasin yes yes 2 0.0065011 98.033 By MS/MS 1 0 1 1 3033100 0 0 3033100 1807 2056 1888 7924 6578 6578 1 0 0 653520 DILVATDVAGR EQREFALSNLKAGAKDILVATDVAGRGIDI AGAKDILVATDVAGRGIDIQDVSMVVNYDM K D I G R G 2 1 0 2 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1128.6139 Q9BUQ8 Q9BUQ8 716 726 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.00032773 126.07 By matching By MS/MS By MS/MS 1.5 0.5 2 2 1 1 2 71675000 1313100 26590000 43772000 1808 1909 1889 7925;7926;7927;7928 6579;6580 6580 2 1313100 11974000 9616400 DIMQALLVRPLGK RAFRGSRYGDFRQIRDIMQALLVRPLGKEH IRDIMQALLVRPLGKEHTVSRLLRVMQCLS R D I G K E 1 1 0 1 0 1 0 1 0 1 3 1 1 0 1 0 0 0 0 1 0 0 13 1 1452.8487 Q15554 Q15554 123 135 TERF2 Telomeric repeat-binding factor 2 yes yes 3 0.008852 72.34 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 6691400 0 1390100 5301300 1809 1374 1890 7929;7930;7931 6581;6582 6582 2 0 461330 982490 DINAVLIDMER SALNLAKNIGLTKARDINAVLIDMERQGDV TKARDINAVLIDMERQGDVYRQGTTPPIWH R D I E R Q 1 1 1 2 0 0 1 0 0 2 1 0 1 0 0 0 0 0 0 1 0 0 11 0 1287.6493 P55265 P55265 329 339 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 2.9647E-05 148.32 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 25919000 0 2085300 23834000 1810 941 1891 7932;7933;7934;7935 6583;6584 6584 2 0 939060 5169100 DINTDFLLVVLR IRGISHVIVDEIHERDINTDFLLVVLRDVV HERDINTDFLLVVLRDVVQAYPEVRIVLMS R D I L R D 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 1 0 0 2 0 0 12 0 1416.7977 Q08211 Q08211 517 528 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00059875 123.79 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 87869000 0 493160 87376000 1811 1182 1892 7936;7937;7938;7939 6585;6586;6587;6588 6586 4 0 222080 19579000 DINTFLGTPVQK GKAMHTPKPAVGEEKDINTFLGTPVQKLDQ EEKDINTFLGTPVQKLDQPGNLPGSNRRLQ K D I Q K L 0 0 1 1 0 1 0 1 0 1 1 1 0 1 1 0 2 0 0 1 0 0 12 0 1331.7085 P46013 P46013 1794 1805 MKI67 Antigen KI-67 yes yes 2 0.012938 89.679 By MS/MS 1.5 0.5 1 1 2 5902900 0 5902900 0 1812 821 1893 7940;7941 6589 6589 1 0 2784400 0 DINWDSSQWQPLIQDR VLLCRQPCASQSSLKDINWDSSQWQPLIQD INWDSSQWQPLIQDRCFLSWLVKIPSEQEQ K D I D R C 0 1 1 3 0 3 0 0 0 2 1 0 0 0 1 2 0 2 0 0 0 0 16 0 1999.9388 Q92900 Q92900 221 236 UPF1 Regulator of nonsense transcripts 1 yes yes 2 8.0503E-47 223.22 By matching By MS/MS 2 0 2 1 1 7143500 1374000 0 5769500 1813 1729 1894 7942;7943 6590 6590 1 1655500 0 1303800 DIPGLTDTTVPR NLSVLNLVIVKKGEKDIPGLTDTTVPRRLG GEKDIPGLTDTTVPRRLGPKRASRIRKLFN K D I P R R 0 1 0 2 0 0 0 1 0 1 1 0 0 0 2 0 3 0 0 1 0 0 12 0 1283.6721 P62753 P62753 120 131 RPS6 40S ribosomal protein S6 yes yes 2 1.5423E-08 172.59 By MS/MS By MS/MS 6.45 1.97 1 1 1 3 2 1 1 1 7 4 653290000 0 151110000 502180000 1814 1032 1895 7944;7945;7946;7947;7948;7949;7950;7951;7952;7953;7954 6591;6592;6593;6594;6595;6596;6597;6598;6599;6600;6601;6602 6598 11 0 60125000 77641000 DIPSLPPLPPLPPLPPLDR YGRPLDEQESQFRERDIPSLPPLPPLPPLP LPPLPPLPPLPPLDRYRDDRWREERNREHG R D I D R Y 0 1 0 2 0 0 0 0 0 1 5 0 0 0 9 1 0 0 0 0 0 0 19 0 2043.1768 P49750 P49750 1327 1345 YLPM1 YLP motif-containing protein 1 yes yes 2;3 0.00054736 86.288 By MS/MS By MS/MS 1.57 0.728 4 2 1 4 3 8857600 0 2900700 5957000 1815 865 1896 7955;7956;7957;7958;7959;7960;7961 6603;6604;6605;6606;6607;6608;6609 6607 7 0 1378400 1265900 DIPTNSPELEETLTHTITK DFVQPPTKICVGCPRDIPTNSPELEETLTH NSPELEETLTHTITKLNAENNATFYFKIDN R D I T K L 0 0 1 1 0 0 3 0 1 2 2 1 0 0 2 1 5 0 0 0 0 0 19 0 2138.0743 P01042 P01042 270 288 KNG1 Kininogen-1;Kininogen-1 heavy chain;T-kinin;Bradykinin;Lysyl-bradykinin;Kininogen-1 light chain;Low molecular weight growth-promoting factor yes yes 3 2.0562E-06 102.89 By MS/MS 9 0 1 1 5143500 5143500 0 0 1816 375 1897 7962 6610 6610 1 2887100 0 0 DIPVLVATDVAAR DQSERNKVISDFKKKDIPVLVATDVAARGL KKDIPVLVATDVAARGLDIPSIKTVINYDV K D I A R G 3 1 0 2 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 3 0 0 13 0 1338.7507 Q86XP3 Q86XP3 548 560 DDX42 ATP-dependent RNA helicase DDX42 yes yes 2 0.0010196 114.45 By MS/MS By MS/MS 2 0 2 1 1 6861000 0 2546800 4314200 1817 1559 1898 7963;7964 6611;6612 6612 2 0 1146900 974920 DIPVVHQLLTR PETPKTAGLRPMETKDIPVVHQLLTRYLKQ METKDIPVVHQLLTRYLKQFHLTPVMSQEE K D I T R Y 0 1 0 1 0 1 0 0 1 1 2 0 0 0 1 0 1 0 0 2 0 0 11 0 1289.7456 P30419 P30419 345 355 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2;3 0.0045132 81.625 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 20951000 0 4324400 16626000 1818 714 1899 7965;7966;7967;7968 6613;6614 6613 2 0 1324900 2834500 DIQDSLTVSNEVQTAK VHYYEDGNVQLVSHKDIQDSLTVSNEVQTA IQDSLTVSNEVQTAKEFIKIVEAAENEYQT K D I A K E 1 0 1 2 0 2 1 0 0 1 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1746.8636 P47755 P47755 211 226 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 2 0.0019342 71.548 By MS/MS 6 0 1 1 0 0 0 0 1819 836 1900 7969 6615 6615 1 0 0 0 DIQMAETSPEGTKPER MDNGEPELDIISNPRDIQMAETSPEGTKPE IQMAETSPEGTKPERRSFRAYAAVLYIDPR R D I E R R 1 1 0 1 0 1 3 1 0 1 0 1 1 0 2 1 2 0 0 0 0 0 16 1 1787.836 Q9Y6X9 Q9Y6X9 222 237 MORC2 MORC family CW-type zinc finger protein 2 yes yes 3 0.0072401 59.862 By MS/MS 2 0 1 1 1380000 0 0 1380000 1820 2320 1901 7970 6616 6616 1 0 0 311860 DIQMTQSPSTLSASVGDR ______________________________ MTQSPSTLSASVGDRVTITCRASQSINTWL - D I D R V 1 1 0 2 0 2 0 1 0 1 1 0 1 0 1 4 2 0 0 1 0 0 18 0 1891.8946 P0DOX7 P0DOX7 1 18 yes yes 2 1.3271E-40 214.88 By MS/MS 9.5 0.5 1 1 2 7452500 7452500 0 0 1821 504 1902 7971;7972 6617;6618 6617 2 5396400 0 0 DIRPGAAFEPTYIYR VPPKPRQALGDKIVRDIRPGAAFEPTYIYR DIRPGAAFEPTYIYRLLTVNKSSLSEKGRQ R D I Y R L 2 2 0 1 0 0 1 1 0 2 0 0 0 1 2 0 1 0 2 0 0 0 15 1 1767.8944 Q14694 Q14694 492 506 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes yes 2 3.0672E-11 108.59 By MS/MS 2 0 1 1 0 0 0 0 1822 1316 1903 7973 6619 6619 1 0 0 0 DISAQEGASPASLMAMGTTSPQLSLSSSPTASVTPTTR KTLSVSRRSSEEVKRDISAQEGASPASLMA SLSSSPTASVTPTTRSRIREERKDPLSALA R D I T R S 5 1 0 1 0 2 1 2 0 1 3 0 2 0 4 9 6 0 0 1 0 0 38 0 3734.7979 Q69YQ0 Q69YQ0 954 991 SPECC1L Cytospin-A yes yes 3 1.4498E-08 48.909 By MS/MS 2 0 1 1 2219700 0 2219700 0 1823 1469 1904 7974 6620 6620 1 0 999550 0 DISEASVFDAYVLPK KKFVIRNIVEAAAVRDISEASVFDAYVLPK DISEASVFDAYVLPKLYVKLHYCVSCAIHS R D I P K L 2 0 0 2 0 0 1 0 0 1 1 1 0 1 1 2 0 0 1 2 0 0 15 0 1652.8298 P62854 P62854 52 66 RPS26 40S ribosomal protein S26 yes yes 2 0.00028541 127.87 By MS/MS By MS/MS By MS/MS 7.62 1.32 2 2 2 1 1 1 4 3 92846000 8051000 36402000 48393000 1824 1040 1905 7975;7976;7977;7978;7979;7980;7981;7982 6621;6622;6623;6624;6625;6626 6621 6 6912100 22763000 11626000 DISEVIALGVPNPR AAPDKRSKLQRNENRDISEVIALGVPNPRT RDISEVIALGVPNPRTSNEVQYDQRLFNQS R D I P R T 1 1 1 1 0 0 1 1 0 2 1 0 0 0 2 1 0 0 0 2 0 0 14 0 1478.8093 Q13573 Q13573 387 400 SNW1 SNW domain-containing protein 1 yes yes 3 0.066772 42.426 By MS/MS 3 0 1 1 754720 0 0 754720 1825 1259 1906 7983 6627 6627 0 0 0 146380 DISLSDYK PNFKATAVMPDGQFKDISLSDYKGKYVVFF MPDGQFKDISLSDYKGKYVVFFFYPLDFTF K D I Y K G 0 0 0 2 0 0 0 0 0 1 1 1 0 0 0 2 0 0 1 0 0 0 8 0 939.45493 Q06830 Q06830 28 35 PRDX1 Peroxiredoxin-1 yes yes 2 0.0044378 101.64 By matching By matching By MS/MS 6.67 0.471 1 2 1 1 1 45453000 898320 4575100 39980000 1826 1173 1907 7984;7985;7986 6628 6628 1 1196100 2627000 7094100 DISPVLKDPASFR IRSFPDFPTPGVVFRDISPVLKDPASFRAA FRDISPVLKDPASFRAAIGLLARHLKATHG R D I F R A 1 1 0 2 0 0 0 0 0 1 1 1 0 1 2 2 0 0 0 1 0 0 13 1 1443.7722 P07741 P07741 28 40 APRT Adenine phosphoribosyltransferase yes yes 2 0.0027981 77.744 By MS/MS 7 0 1 1 0 0 0 0 1827 464 1908 7987 6629 6629 1 0 0 0 DISSSLNSLADSNAR NGNVEAKVVCLFRRRDISSSLNSLADSNAR DISSSLNSLADSNAREFEEESKQPGVSEQQ R D I A R E 2 1 2 2 0 0 0 0 0 1 2 0 0 0 0 5 0 0 0 0 0 0 15 0 1548.738 O94776 O94776 50 64 MTA2 Metastasis-associated protein MTA2 yes yes 2 8.316E-05 155.47 By MS/MS 3 0 1 1 12181000 0 0 12181000 1828 298 1909 7988 6630 6630 1 0 0 2362500 DISSTLIALADK NGNVEAKVVCFYRRRDISSTLIALADKHAT RRRDISSTLIALADKHATLSVCYKAGPGAD R D I D K H 2 0 0 2 0 0 0 0 0 2 2 1 0 0 0 2 1 0 0 0 0 0 12 0 1245.6816 Q13330 Q13330 50 61 MTA1 Metastasis-associated protein MTA1 yes yes 2 0.069182 68.069 By matching By MS/MS 3 0 2 1 1 5622000 932440 0 4689500 1829 1239 1910 7989;7990 6631 6631 1 1075800 0 909550 DISTNKVEQIPYGER KPPPVQQTVDYGHGRDISTNKVEQIPYGER DISTNKVEQIPYGERITLRPDPLPERSTFE R D I E R I 0 1 1 1 0 1 2 1 0 2 0 1 0 0 1 1 1 0 1 1 0 0 15 1 1747.8741 P49750 P49750 1647 1661 YLPM1 YLP motif-containing protein 1 yes yes 3 0.0050816 67.415 By MS/MS 1 0 1 1 11257000 0 0 11257000 1830 865 1911 7991 6632 6632 1 0 0 2425600 DISTNYYASQK NMERIMKAQAYQTGKDISTNYYASQKKTFE QTGKDISTNYYASQKKTFEINPRHPLIRDM K D I Q K K 1 0 1 1 0 1 0 0 0 1 0 1 0 0 0 2 1 0 2 0 0 0 11 0 1288.5935 P14625 P14625 672 682 HSP90B1 Endoplasmin yes yes 2 0.067631 60.518 By MS/MS By matching 2.33 0.471 2 1 1 2 10343000 3475600 0 6867000 1831 560 1912 7992;7993;7994 6633 6633 0 4187700 0 1402300 DITIHANPFAQ VNEKTYRPLNDVHIKDITIHANPFAQ____ VHIKDITIHANPFAQ_______________ K D I A Q - 2 0 1 1 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 11 0 1225.6091 Q9H2H8 Q9H2H8 151 161 PPIL3 Peptidyl-prolyl cis-trans isomerase-like 3 yes yes 2 3.5975E-05 147.24 By MS/MS By MS/MS By MS/MS 8 0 3 1 1 1 23422000 9175600 6072600 8173700 1832 1973 1913 7995;7996;7997 6634;6635;6636 6634 3 7877600 2762800 1253100 DITLFHAMDTLHK VRQPSLHMSAAAASRDITLFHAMDTLHKNI SRDITLFHAMDTLHKNIYDISKAISALVPQ R D I H K N 1 0 0 2 0 0 0 0 2 1 2 1 1 1 0 0 2 0 0 0 0 0 13 0 1540.7708 Q13330 Q13330 248 260 MTA1 Metastasis-associated protein MTA1 yes yes 3 0.017814 60.364 By MS/MS 3 0 1 1 3916700 0 3916700 0 1833 1239 1914 7998 6637 6637 1 0 1669700 0 DITLFHAMDTLQR IRQPSLHMSAAAASRDITLFHAMDTLQRNG SRDITLFHAMDTLQRNGYDLAKAMSTLVPQ R D I Q R N 1 1 0 2 0 1 0 0 1 1 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1559.7766 O94776 O94776 228 240 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 0.00031685 138.76 By matching By MS/MS 2.5 0.5 2 2 1 3 15292000 805600 0 14487000 1834 298 1915 7999;8000;8001;8002 6638;6639 6638 2 970650 0 2839200 DITSDTSGDFR INRVYREELKRDLAKDITSDTSGDFRNALL DLAKDITSDTSGDFRNALLSLAKGDRSEDF K D I F R N 0 1 0 3 0 0 0 1 0 1 0 0 0 1 0 2 2 0 0 0 0 0 11 0 1212.5259 P04083 P04083 167 177 ANXA1 Annexin A1 yes yes 2 4.9504E-10 172.23 By MS/MS By MS/MS By MS/MS 4.75 2.17 1 3 2 1 1 20403000 10990000 3891300 5522200 1835 410 1916 8003;8004;8005;8006 6640;6641;6642;6643 6643 3 12009000 1347000 826190 DITYFIQQLLR YVIGSCIKHIPIAGRDITYFIQQLLRDREV IAGRDITYFIQQLLRDREVGIPPEQSLETA R D I L R D 0 1 0 1 0 2 0 0 0 2 2 0 0 1 0 0 1 0 1 0 0 0 11 0 1408.7715 P61158;Q9C0K3;Q9P1U1 P61158 199 209 ACTR3;ACTR3C;ACTR3B Actin-related protein 3;Actin-related protein 3C;Actin-related protein 3B yes no 2 0.0003281 128.69 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 1 4 5030600 0 578990 4451700 1836 980 1917 8007;8008;8009;8010;8011 6644;6645;6646;6647 6647 4 0 149240 802350 DIVEELSALK PTSTRRRPKTPLGKRDIVEELSALKQLTQT PLGKRDIVEELSALKQLTQTTHTDKVPGDE R D I L K Q 1 0 0 1 0 0 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1115.6074 P46013 P46013 2129 2138 MKI67 Antigen KI-67 yes yes 2 0.0018853 107.57 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 6703100 0 6703100 0 1837 821 1918 8012;8013;8014 6648;6649;6650 6648 3 0 3207000 0 DIVENYFMR TVVDCPVCKQQCFSKDIVENYFMRDSGSKA QQCFSKDIVENYFMRDSGSKAATDAQDANQ K D I M R D 0 1 1 1 0 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 9 0 1185.5488 Q13263 Q13263 128 136 TRIM28 Transcription intermediary factor 1-beta yes yes 2 3.0451E-11 170.06 By MS/MS By MS/MS 3.29 1.67 1 2 1 1 1 1 2 5 92472000 0 18224000 74247000 1838 1235 1919 8015;8016;8017;8018;8019;8020;8021 6651;6652;6653;6654;6655 6651 3 0 8299000 14527000 DIVHKPGPIVLTVAK NFENMSNDDAVRVLRDIVHKPGPIVLTVAK DIVHKPGPIVLTVAKCWDPSPQAYFTLPRN R D I A K C 1 0 0 1 0 0 0 1 1 2 1 2 0 0 2 0 1 0 0 3 0 0 15 1 1585.9556 O14641 O14641 339 353 DVL2 Segment polarity protein dishevelled homolog DVL-2 yes yes 3 0.02479 52.112 By MS/MS 2 0.816 1 1 1 3 20359000 0 0 20359000 1839 140 1920 8022;8023;8024 6656 6656 1 0 0 4260100 DIVINANPASPPLSLLVLHR LDLNSVLGKDYGALKDIVINANPASPPLSL ANPASPPLSLLVLHRLLCEHFRVLSTVHTH K D I H R L 2 1 2 1 0 0 0 0 1 2 4 0 0 0 3 2 0 0 0 2 0 0 20 0 2138.2212 Q13155 Q13155 121 140 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes yes 3 0.039676 32.797 By matching By MS/MS 6 0.816 1 1 1 1 2 5642900 0 974150 4668800 1840 1226 1921 8025;8026;8027 6657 6657 1 0 251100 729190 DIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAK EEGKKKEHKKVKSTRDIVPFSELGTTPSGG STRPPLGSTELQAAKKVHTSKGDLPREPLV R D I A K K 2 1 0 1 0 2 3 6 0 3 3 1 0 4 5 5 4 0 0 1 0 0 41 1 4235.1427 P42166 P42166 202 242 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 4 1.1807E-06 36.473 By MS/MS 3 0 1 1 23107000 0 0 23107000 1841 798 1922 8028 6658 6658 1 0 0 4481600 DIVQFVPFR DDGPLRCPRGVPAARDIVQFVPFRDFKDAA GVPAARDIVQFVPFRDFKDAAPSALAKCVL R D I F R D 0 1 0 1 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 2 0 0 9 0 1119.6077 O95741;Q96FN4;Q8IYJ1;Q96A23;Q86YQ8;Q9HCH3;Q9UBL6 O95741 500 508 CPNE6;CPNE2;CPNE9;CPNE4;CPNE8;CPNE5;CPNE7 Copine-6;Copine-2;Copine-9;Copine-4;Copine-8;Copine-5;Copine-7 no no 2 0.00051371 125.25 By matching By MS/MS By MS/MS 6.4 2.94 3 2 1 2 2 9592800 1036900 3821800 4734000 1842 336 1923 8029;8030;8031;8032;8033 6659;6660;6661 6661 3 808980 3401100 1911800 DIVYIGLR DVPGFSWVTPCISAKDIVYIGLRDVDPGEH TPCISAKDIVYIGLRDVDPGEHYILKTLGI K D I L R D 0 1 0 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 1 1 0 0 8 0 947.54402 P05089 P05089 173 180 ARG1 Arginase-1 yes yes 2 0.0064025 98.133 By MS/MS By MS/MS 6.5 3.43 2 1 1 1 1 2 6 2 27822000 24542000 0 3280700 1843 422 1924 8034;8035;8036;8037;8038;8039;8040;8041 6662;6663 6663 2 28470000 0 3814300 DIYALISDQK RLPLETAYRRGCLHKDIYALISDQKHMRKR GCLHKDIYALISDQKHMRKRFVDPNTQEKV K D I Q K H 1 0 0 2 0 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1164.6027 P58107 P58107 2039 2048 EPPK1 Epiplakin yes yes 2 0.00037934 138.06 By MS/MS 1 0 1 1 6742600 0 6742600 0 1844 958 1925 8042 6664 6664 1 0 3295700 0 DIYQDLNR GILITERKKADFSTKDIYQDLNRLLKGKKG KADFSTKDIYQDLNRLLKGKKGEQMNSAVL K D I N R L 0 1 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1035.4985 P43246 P43246 236 243 MSH2 DNA mismatch repair protein Msh2 yes yes 2 0.0010414 121.29 By MS/MS 2 0 1 1 3816600 0 3816600 0 1845 813 1926 8043 6665 6665 1 0 1718700 0 DKADFCIIHYAGK EQGTHPKFQKPKQLKDKADFCIIHYAGKVD LKDKADFCIIHYAGKVDYKADEWLMKNMDP K D K G K V 2 0 0 2 1 0 0 1 1 2 0 2 0 1 0 0 0 0 1 0 0 0 13 1 1536.7395 P35579;P35580 P35579 564 576 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 0.010578 69.92 By MS/MS 1 0 1 1 12788000 0 0 12788000 1846 752;753 1927 8044 6666 6666 1 0 0 2755400 DKDAYSSFGSR KGFYDKDSSGWSSSKDKDAYSSFGSRSDSR SSSKDKDAYSSFGSRSDSRGKSSFFSDRGS K D K S R S 1 1 0 2 0 0 0 1 0 0 0 1 0 1 0 3 0 0 1 0 0 0 11 1 1231.5469 O00571;O15523 O00571 65 75 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 1.1883E-45 219.03 By matching By MS/MS By MS/MS 2.43 0.728 1 2 4 2 3 2 135240000 39001000 23479000 72756000 1847 131 1928 8045;8046;8047;8048;8049;8050;8051 6667;6668;6669;6670 6668 4 46453000 10037000 14111000 DKDDKISWEEYK YIFDNVAKVWKDYDRDKDDKISWEEYKQAT YDRDKDDKISWEEYKQATYGYYLGNPAEFH R D K Y K Q 0 0 0 3 0 0 2 0 0 1 0 3 0 0 0 1 0 1 1 0 0 0 12 2 1554.7202 Q15293 Q15293 130 141 RCN1 Reticulocalbin-1 yes yes 3 0.030431 63.662 By MS/MS 5 0 1 1 10968000 0 0 10968000 1848 1354 1929 8052 6671 6671 1 0 0 1529800 DKEIELVIHR LNREQELREEIRKGRDKEIELVIHRLEADM IRKGRDKEIELVIHRLEADMALAKEESEKA R D K H R L 0 1 0 1 0 0 2 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1250.6983 Q9UPN4 Q9UPN4 897 906 CEP131 Centrosomal protein of 131 kDa yes yes 3 0.00018273 113.44 By MS/MS 2 0 1 1 11945000 0 0 11945000 1849 2215 1930 8053 6672 6672 1 0 0 2699400 DKEVEFGGPAPR GLPGSGKTHVAKLIRDKEVEFGGPAPRVLS LIRDKEVEFGGPAPRVLSLDDYFITEVEKE R D K P R V 1 1 0 1 0 0 2 2 0 0 0 1 0 1 2 0 0 0 0 1 0 0 12 1 1300.6412 P49750 P49750 1856 1867 YLPM1 YLP motif-containing protein 1 yes yes 2;3 0.022687 107.79 By MS/MS 1 0 2 2 11821000 0 0 11821000 1850 865 1931 8054;8055 6673;6674 6673 2 0 0 2546900 DKFNECGHVLYADIK FVRNLPFDFTWKMLKDKFNECGHVLYADIK DKFNECGHVLYADIKMENGKSKGCGVVKFE K D K I K M 1 0 1 2 1 0 1 1 1 1 1 2 0 1 0 0 0 0 1 1 0 0 15 1 1807.8563 P52272 P52272 671 685 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3;4 0.0054708 99.941 By MS/MS 2.75 0.433 1 3 4 59264000 0 0 59264000 1851 902 1932 8056;8057;8058;8059 6675;6676;6677 6676 3 0 0 11649000 DKFPEVIINFPDPAQK RTIIGQKGERIREIRDKFPEVIINFPDPAQ KFPEVIINFPDPAQKSDIVQLRGPKNEVEK R D K Q K S 1 0 1 2 0 1 1 0 0 2 0 2 0 2 3 0 0 0 0 1 0 0 16 1 1856.9672 Q00341 Q00341 535 550 HDLBP Vigilin yes yes 3 0.00068893 86.772 By MS/MS 2 0 1 1 1461600 0 1461600 0 1852 1122 1933 8060 6678 6678 1 0 658160 0 DKFQETSDEFEAAR AAPNMKAMEKLESVRDKFQETSDEFEAARK RDKFQETSDEFEAARKRAKKAKQAFEQIKK R D K A R K 2 1 0 2 0 1 3 0 0 0 0 1 0 2 0 1 1 0 0 0 0 0 14 1 1671.7376 Q14683 Q14683 1036 1049 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 4.9873E-33 206.97 By matching By MS/MS 1.4 0.49 3 2 1 4 141830000 0 2260900 139570000 1853 1312 1934 8061;8062;8063;8064;8065 6679;6680;6681;6682 6682 4 0 1105100 30782000 DKFSPFPVQDRPESSLVFK LPPQEDATASPPRQKDKFSPFPVQDRPESS PFPVQDRPESSLVFKDTLRTPPRERSGAGS K D K F K D 0 1 0 2 0 1 1 0 0 0 1 2 0 3 3 3 0 0 0 2 0 0 19 2 2222.1372 Q9UQ35 Q9UQ35 1185 1203 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.00083926 71.073 By MS/MS 1.5 0.5 1 1 2 8005500 0 8005500 0 1854 2219 1935 8066;8067 6683 6683 1 0 3872500 0 DKGFGFIR LFEKYGKAGEVFIHKDKGFGFIRLETRTLA GEVFIHKDKGFGFIRLETRTLAEIAKVELD K D K I R L 0 1 0 1 0 0 0 2 0 1 0 1 0 2 0 0 0 0 0 0 0 0 8 1 938.4974 Q15233 Q15233 108 115 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.0022594 132.53 By MS/MS By MS/MS 3.5 1.71 1 1 1 1 1 1 2 4 181040000 0 11930000 169110000 1855 1351 1936 8068;8069;8070;8071;8072;8073 6684;6685;6686;6687 6686 4 0 5130600 27850000 DKILGATIENSR SRDYSHYYTTIQDLRDKILGATIENSRIVL DLRDKILGATIENSRIVLQIDNARLAADDF R D K S R I 1 1 1 1 0 0 1 1 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 1 1315.7096 CON__P08727;P08727 CON__P08727 139 150 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 0.0027227 128.81 By MS/MS By MS/MS 5 0 3 1 2 30804000 0 8655900 22148000 + 1856 51 1937 8074;8075;8076 6688;6689;6690 6688 3 0 2231200 3089300 DKLDETGNSLK LPVKGFRSYVDMYLKDKLDETGNSLKVIHE MYLKDKLDETGNSLKVIHEQVNHRWEVCLT K D K L K V 0 0 1 2 0 0 1 1 0 0 2 2 0 0 0 1 1 0 0 0 0 0 11 1 1218.6092 P11388 P11388 277 287 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.6033E-25 197.21 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 32903000 0 12956000 19947000 1857 524 1938 8077;8078;8079;8080;8081 6691;6692;6693;6694 6693 4 0 6106500 4318400 DKLDETGVALK LPVNGFRSYVDLYVKDKLDETGVALKVIHE LYVKDKLDETGVALKVIHELANERWDVCLT K D K L K V 1 0 0 2 0 0 1 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1187.6398 Q02880 Q02880 298 308 TOP2B DNA topoisomerase 2-beta yes yes 2 2.9586E-06 157.75 By MS/MS 1.5 0.5 1 1 2 31530000 0 0 31530000 1858 1150 1939 8082;8083 6695 6695 1 0 0 6834000 DKLDGNELDLSLSDLNEVPVK ______________________________ ELDLSLSDLNEVPVKELAALPKATILDLSC R D K V K E 0 0 2 4 0 0 2 1 0 0 5 2 0 0 1 2 0 0 0 2 0 0 21 1 2312.1747 Q96AG4 Q96AG4 13 33 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 1.3115E-45 215.23 By matching By MS/MS 6 0 3 1 2 72756000 0 12377000 60379000 1859 1751 1940 8084;8085;8086 6696;6697 6697 2 0 4284400 9033300 DKLDGNELDLSLSDLNEVPVKELAALPK ______________________________ DLNEVPVKELAALPKATILDLSCNKLTTLP R D K P K A 2 0 2 4 0 0 3 1 0 0 7 3 0 0 2 2 0 0 0 2 0 0 28 2 3034.6074 Q96AG4 Q96AG4 13 40 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 4 0.017703 29.341 By MS/MS 6 0 1 1 6547200 0 6547200 0 1860 1751 1941 8087 6698 6698 1 0 2266400 0 DKLDILGAAETGSGK APTPIQALTLAPAIRDKLDILGAAETGSGK DKLDILGAAETGSGKTLAFAIPMIHAVLQW R D K G K T 2 0 0 2 0 0 1 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 15 1 1473.7675 Q9GZR7 Q9GZR7 229 243 DDX24 ATP-dependent RNA helicase DDX24 yes yes 2;3 0.0025198 136.3 By MS/MS By MS/MS 2 0 3 1 2 17667000 0 4833400 12834000 1861 1952 1942 8088;8089;8090 6699;6700;6701 6699 3 0 2176500 2900200 DKLEEILR VEEPSKKGALKEEQRDKLEEILRGLTPRKN ALKEEQRDKLEEILRGLTPRKNDIGDAMVF R D K L R G 0 1 0 1 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1014.571 O15042 O15042 540 547 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.032581 102.41 By MS/MS 1.5 0.5 1 1 2 16995000 0 0 16995000 1862 163 1943 8091;8092 6702 6702 1 0 0 3766700 DKLESEMEDAYHEHQANLLR KQQREQVEKNMKDAKDKLESEMEDAYHEHQ EMEDAYHEHQANLLRQDLMRRQEELRRMEE K D K L R Q 2 1 1 2 0 1 4 0 2 0 3 1 1 0 0 1 0 0 1 0 0 0 20 1 2427.1125 P23246 P23246 517 536 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3;4;5 0 361.38 By MS/MS By MS/MS 2.52 1.25 4 10 5 2 1 1 3 20 1013400000 0 59989000 953460000 1863 638 1944;1945 8093;8094;8095;8096;8097;8098;8099;8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114;8115 6703;6704;6705;6706;6707;6708;6709;6710;6711;6712;6713;6714;6715;6716;6717;6718;6719;6720;6721;6722;6723;6724;6725 6718 283 23 0 27014000 205710000 DKLNNLVLFDK GGKAKKKKWSKGKVRDKLNNLVLFDKATYD GKVRDKLNNLVLFDKATYDKLCKEVPNYKL R D K D K A 0 0 2 2 0 0 0 0 0 0 3 2 0 1 0 0 0 0 0 1 0 0 11 1 1317.7293 P62851 P62851 42 52 RPS25 40S ribosomal protein S25 yes yes 2;3 3.9074E-26 204.34 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 228310000 0 36824000 191490000 1864 1039 1946 8116;8117;8118;8119;8120;8121 6726;6727;6728;6729;6730;6731 6726 6 0 17736000 30022000 DKLTVEELEQFQSK SSSIIATDNVLFTPRDKLTVEELEQFQSKK RDKLTVEELEQFQSKKFTLGKIPLKPPPLE R D K S K K 0 0 0 1 0 2 3 0 0 0 2 2 0 1 0 1 1 0 0 1 0 0 14 1 1692.857 O15504 O15504 391 404 NUPL2 Nucleoporin-like protein 2 yes yes 2 0.0040684 138.24 By MS/MS 5 0 1 1 4384900 0 0 4384900 1865 184 1947 8122 6732 6732 1 0 0 611620 DKLVYVHTNGPK LNSVIGRALGISHAKDKLVYVHTNGPKKKK HAKDKLVYVHTNGPKKKKVTLHIKWPKSVE K D K P K K 0 0 1 1 0 0 0 1 1 0 1 2 0 0 1 0 1 0 1 2 0 0 12 1 1369.7354 Q7L2E3 Q7L2E3 72 83 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3 0.037419 55.188 By MS/MS 1.5 0.5 1 1 2 5578500 0 0 5578500 1866 1522 1948 8123;8124 6733 6733 1 0 0 1235500 DKNEQAFEEVFQNANFR EAILGQNAAYLGELKDKNEQAFEEVFQNAN NEQAFEEVFQNANFRSFIFRVRVKVETYND K D K F R S 2 1 3 1 0 2 3 0 0 0 0 1 0 3 0 0 0 0 0 1 0 0 17 1 2084.9552 P27694 P27694 552 568 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 3 5.0259E-07 153.48 By MS/MS 3 0 1 1 8737400 0 0 8737400 1867 679 1949 8125 6734 6734 1 0 0 1694600 DKPDNFQLFQSPHGK VIWELLNHAQEHFGKDKPDNFQLFQSPHGK DKPDNFQLFQSPHGKDLLFKDSADGFLKIP K D K G K D 0 0 1 2 0 2 0 1 1 0 1 2 0 2 2 1 0 0 0 0 0 0 15 1 1756.8533 CON__Q29443;CON__Q0IIK2 CON__Q29443 281 295 yes no 3 6.4712E-05 130.95 By MS/MS By matching 3 0 2 1 1 33745000 25053000 0 8691300 + 1868 74 1950 8126;8127 6735 6735 1 28906000 0 1685700 DKPHVNVGTIGHVDHGK LCRGLAVEAKKTYVRDKPHVNVGTIGHVDH PHVNVGTIGHVDHGKTTLTAAITKILAEGG R D K G K T 0 0 1 2 0 0 0 3 3 1 0 2 0 0 1 0 1 0 0 3 0 0 17 1 1808.9282 P49411 P49411 54 70 TUFM Elongation factor Tu, mitochondrial yes yes 4 0.0091233 53.773 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 1 4 42181000 0 6993100 35188000 1869 856 1951 8128;8129;8130;8131;8132 6736;6737 6737 2 0 1802600 5107100 DKPLKDVIIADCGK MEVVRKVESTKTDSRDKPLKDVIIADCGKI RDKPLKDVIIADCGKIEVEKPFAIAKE___ R D K G K I 1 0 0 3 1 0 0 1 0 2 1 3 0 0 1 0 0 0 0 1 0 0 14 2 1570.8389 P23284 P23284 191 204 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 3 0.0032534 80.387 By matching By MS/MS 7 0 2 1 1 27086000 0 2389000 24697000 1870 640 1952 8133;8134 6738 6738 1 0 1371800 4382300 DKPVTGEQIEVFANK NDALLKENESPDVRRDKPVTGEQIEVFANK DKPVTGEQIEVFANKLGEQWKILAPYLEMK R D K N K L 1 0 1 1 0 1 2 1 0 1 0 2 0 1 1 0 1 0 0 2 0 0 15 1 1673.8625 Q96FV9 Q96FV9 566 580 THOC1 THO complex subunit 1 yes yes 2 0.047339 81.239 By matching By MS/MS 3 0 2 1 1 13759000 4398400 0 9360700 1871 1783 1953 8135;8136 6739 6739 1 5074700 0 1815500 DKQNIFEFFER PHSDENGSTTPKVKKDKQNIFEFFERQTLL KVKKDKQNIFEFFERQTLLLRPGGKWYDLE K D K E R Q 0 1 1 1 0 1 2 0 0 1 0 1 0 3 0 0 0 0 0 0 0 0 11 1 1471.7096 Q03701 Q03701 162 172 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2;3 0.00036841 145.25 By MS/MS 1.67 0.471 1 2 3 17894000 0 0 17894000 1872 1157 1954 8137;8138;8139 6740;6741 6740 2 0 0 4030100 DKQNKPTGFALGSIEGR ESPLKHQHRCVAIFKDKQNKPTGFALGSIE QNKPTGFALGSIEGRVAIHYINPPNPAKDN K D K G R V 1 1 1 1 0 1 1 3 0 1 1 2 0 1 1 1 1 0 0 0 0 0 17 2 1816.9432 P78406 P78406 223 239 RAE1 mRNA export factor yes yes 2 0.0015695 141.46 By MS/MS 5 0 1 1 8221400 0 0 8221400 1873 1087 1955 8140 6742 6742 1 0 0 1146700 DKTLLRDEK LMEEKKEEITGTLRKDKTLLRDEKKMEKLK TGTLRKDKTLLRDEKKMEKLKQKLHTDDEL K D K E K K 0 1 0 2 0 0 1 0 0 0 2 2 0 0 0 0 1 0 0 0 0 0 9 2 1116.6139 Q9Y490 Q9Y490 148 156 TLN1 Talin-1 yes yes 1 0.05379 34.173 By MS/MS 1 0 1 1 1236200 0 0 1236200 1874 2284 1956 8141 6743 6743 0 0 0 266360 DKVAGHSLGYGFVNYVTAK LFSSIGEVESAKLIRDKVAGHSLGYGFVNY GHSLGYGFVNYVTAKDAERAINTLNGLRLQ R D K A K D 2 0 1 1 0 0 0 3 1 0 1 2 0 1 0 1 1 0 2 3 0 0 19 1 2025.032 Q15717 Q15717 54 72 ELAVL1 ELAV-like protein 1 yes yes 3;4 1.7502E-09 121.35 By MS/MS 5.67 0.471 1 2 3 61964000 0 61964000 0 1875 1380 1957 8142;8143;8144 6744;6745 6744 2 0 21333000 0 DKVSSFFNTLK GDVEDHLSFLEKDLRDKVSSFFNTLKEKES KDLRDKVSSFFNTLKEKESQAPALPAQEEM R D K L K E 0 0 1 1 0 0 0 0 0 0 1 2 0 2 0 2 1 0 0 1 0 0 11 1 1284.6714 CON__Q32PJ2 CON__Q32PJ2 349 359 yes yes 2 0.038643 101.3 By MS/MS 5 0 1 1 10398000 0 0 10398000 + 1876 81 1958 8145 6746 6746 1 0 0 1450300 DKWSNFDPTGLER EGGGDRGLGDRPAPKDKWSNFDPTGLERAA PKDKWSNFDPTGLERAAKAARELEHSRYAK K D K E R A 0 1 1 2 0 0 1 1 0 0 1 1 0 1 1 1 1 1 0 0 0 0 13 1 1563.7318 Q5T9A4;Q9NVI7 Q9NVI7 45 57 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.00011928 162.21 By MS/MS 3 0 1 1 12481000 0 0 12481000 1877 2066;1456 1959 8146 6747 6747 1 0 0 2420800 DKYGVFPLR SAKTLAVSGLGVVGRDKYGVFPLRGKILNV LGVVGRDKYGVFPLRGKILNVREASHKQIM R D K L R G 0 1 0 1 0 0 0 1 0 0 1 1 0 1 1 0 0 0 1 1 0 0 9 1 1093.592 P11388 P11388 479 487 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.012074 107.66 By MS/MS 1 0 1 1 39302000 0 0 39302000 1878 524 1960 8147 6748;6749 6748 2 0 0 8468300 DKYKDTQSVSAIGEEK EIKGRTVAVDWAVAKDKYKDTQSVSAIGEE KYKDTQSVSAIGEEKSHESKHQESVKKKGR K D K E K S 1 0 0 2 0 1 2 1 0 1 0 3 0 0 0 2 1 0 1 1 0 0 16 2 1796.8792 Q9NW13 Q9NW13 193 208 RBM28 RNA-binding protein 28 yes yes 3 8.2192E-05 74.141 By MS/MS 2 0 1 1 0 0 0 0 1879 2075 1961 8148 6750 6750 1 0 0 0 DKYPNLQVIGGNVVTAAQAK QGNSIFQINMIKYIKDKYPNLQVIGGNVVT LQVIGGNVVTAAQAKNLIDAGVDALRVGMG K D K A K N 3 0 2 1 0 2 0 2 0 1 1 2 0 0 1 0 1 0 1 3 0 0 20 1 2085.1219 P12268 P12268 292 311 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 3 1.6829E-05 81.788 By MS/MS 4 0 1 1 7612300 0 7612300 0 1880 535 1962 8149 6751;6752 6751 2 0 2526200 0 DLAALEDKVK ASVQALLRKHEGLERDLAALEDKVKALCAE EGLERDLAALEDKVKALCAEADRLQQSHPL R D L V K A 2 0 0 2 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1100.6077 Q13813 Q13813 303 312 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.038294 98.033 By MS/MS 1 0 1 1 32853000 0 0 32853000 1881 1268 1963 8150 6753 6753 1 0 0 7078800 DLAALGDKVNSLGETAER ASVQALQRKHEGFERDLAALGDKVNSLGET ALGDKVNSLGETAERLIQSHPESAEDLQEK R D L E R L 3 1 1 2 0 0 2 2 0 0 3 1 0 0 0 1 1 0 0 1 0 0 18 1 1857.9432 Q13813 Q13813 1281 1298 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.2664E-09 146.67 By MS/MS By MS/MS 1.33 0.471 4 2 4 2 48739000 0 16699000 32040000 1882 1268 1964 8151;8152;8153;8154;8155;8156 6754;6755;6756;6757;6758 6758 5 0 8008700 6903600 DLADELALVDVIEDK VGAVGMACAISILMKDLADELALVDVIEDK DLADELALVDVIEDKLKGEMMDLQHGSLFL K D L D K L 2 0 0 4 0 0 2 0 0 1 3 1 0 0 0 0 0 0 0 2 0 0 15 0 1656.8458 P00338 P00338 43 57 LDHA L-lactate dehydrogenase A chain yes yes 2 0.040478 62.408 By MS/MS 6 0.816 1 1 1 3 1016500 1016500 0 0 1883 356 1965 8157;8158;8159 6759 6759 1 1219500 0 0 DLAEDAPWKK GGVDTRDAEMPATEKDLAEDAPWKKIQQNT PATEKDLAEDAPWKKIQQNTFTRWCNEHLK K D L K K I 2 0 0 2 0 0 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 10 1 1171.5873 P21333;O75369;Q14315 P21333 34 43 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 0.015674 89.355 By matching By MS/MS 1 0 2 1 1 13873000 9400400 4472900 0 1884 623;1298;254 1966 8160;8161 6760 6760 1 9400400 2186300 0 DLAEFVISLAEK KVCTELDNHLGINDKDLAEFVISLAEKNTT NDKDLAEFVISLAEKNTTFDTFKASLVKNG K D L E K N 2 0 0 1 0 0 2 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1333.7129 Q14562 Q14562 48 59 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 0.0033461 94.616 By MS/MS 2 0 1 1 0 0 0 0 1885 1304 1967 8162 6761 6761 1 0 0 0 DLAGSIIGK DLGGPIITTQVTIPKDLAGSIIGKGGQRIK QVTIPKDLAGSIIGKGGQRIKQIRHESGAS K D L G K G 1 0 0 1 0 0 0 2 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 0 872.49673 P61978 P61978 397 405 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 0.035345 75.738 By MS/MS By MS/MS 3 1.41 1 2 1 2 344030000 45468000 298570000 0 1886 1002 1968 8163;8164;8165 6762;6763;6764 6762 3 35473000 99755000 0 DLAGSIIGKGGQR DLGGPIITTQVTIPKDLAGSIIGKGGQRIK PKDLAGSIIGKGGQRIKQIRHESGASIKID K D L Q R I 1 1 0 1 0 1 0 4 0 2 1 1 0 0 0 1 0 0 0 0 0 0 13 1 1270.6993 P61978 P61978 397 409 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 5.5499E-05 163.16 By MS/MS 4 0 1 1 4346500 0 4346500 0 1887 1002 1969 8166 6765 6765 1 0 1442400 0 DLAIYYSYGDFLLGK EEGRSRSEYLNRLKKDLAIYYSYGDFLLGK DLAIYYSYGDFLLGKLMDLFPLSELVEFLE K D L G K L 1 0 0 2 0 0 0 2 0 1 3 1 0 1 0 1 0 0 3 0 0 0 15 0 1736.8661 P46087 P46087 273 287 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0002822 130.69 By MS/MS 2 0 1 1 5400700 0 0 5400700 1888 824 1970 8167 6766 6766 1 0 0 1220500 DLALGLVPGDR CRRVVHFAEPGAGTKDLALGLVPGDRLVEI AGTKDLALGLVPGDRLVEINGHNVESKSRD K D L D R L 1 1 0 2 0 0 0 2 0 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1124.619 Q92614 Q92614 265 275 MYO18A Unconventional myosin-XVIIIa yes yes 2 0.010542 90.15 By matching By MS/MS By matching 1.75 0.829 2 1 1 1 2 1 9164300 298670 6534800 2330900 1889 1710 1971 8168;8169;8170;8171 6767 6767 1 298670 3130000 452080 DLANDIMTLMSHTKPYIR ALTGLSCFVTPDLARDLANDIMTLMSHTKP NDIMTLMSHTKPYIRKKAVLIMYKVFLKYP R D L I R K 1 1 1 2 0 0 0 0 1 2 2 1 2 0 1 1 2 0 1 0 0 0 18 1 2118.0602 O14617 O14617 146 163 AP3D1 AP-3 complex subunit delta-1 yes yes 4 3.2448E-09 122.75 By MS/MS 2 0.816 1 1 1 3 4812600 0 0 4812600 1890 139 1972 8172;8173;8174 6768;6769 6768 2 0 0 983570 DLAPIGIR ASKGGIVGMTLPIARDLAPIGIRVMTIAPG MTLPIARDLAPIGIRVMTIAPGLFGTPLLT R D L I R V 1 1 0 1 0 0 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 853.50215 Q99714 Q99714 185 192 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2 0.0083209 95.793 By MS/MS 7 0 1 1 18770000 0 18770000 0 1891 1859 1973 8175 6770 6770 1 0 10778000 0 DLAPYLPSVTPGLK AAQIIGNMYSLTDQKDLAPYLPSVTPGLKA KDLAPYLPSVTPGLKASLLDPVPEVRTVSA K D L L K A 1 0 0 1 0 0 0 1 0 0 3 1 0 0 3 1 1 0 1 1 0 0 14 0 1469.813 Q92616 Q92616 1650 1663 GCN1L1 Translational activator GCN1 yes yes 2 0.047986 64.878 By MS/MS 1 0 1 1 3902300 0 3902300 0 1892 1712 1974 8176 6771 6771 1 0 1907400 0 DLAQALINR RPVTLRTNTLKTRRRDLAQALINRGVNLDP LKTRRRDLAQALINRGVNLDPLGKWSKTGL R D L N R G 2 1 1 1 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1012.5665 P46087 P46087 323 331 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 1.8586E-11 147.34 By matching By MS/MS By MS/MS 2.67 0.745 3 2 1 1 2 3 110000000 26575000 46274000 37152000 1893 824 1975 8177;8178;8179;8180;8181;8182 6772;6773;6774;6775 6774 4 32020000 20542000 8202600 DLAQDEAVWLER KLCQALAINKSFDQRDLAQDEAVWLERGPL DQRDLAQDEAVWLERGPLEPSEPAVVAAAR R D L E R G 2 1 0 2 0 1 2 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 12 0 1443.6994 P29372 P29372 235 246 MPG DNA-3-methyladenine glycosylase yes yes 2 4.3625E-05 147.74 By MS/MS 6.5 0.5 1 1 2 14488000 0 0 14488000 1894 698 1976 8183;8184 6776 6776 1 0 0 2233200 DLAQINDLQAQLEEANKEK ELMKKHKAAVAQASRDLAQINDLQAQLEEA INDLQAQLEEANKEKQELQEKLQALQSQVE R D L E K Q 3 0 2 2 0 3 3 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 19 1 2169.0913 Q92614 Q92614 1772 1790 MYO18A Unconventional myosin-XVIIIa yes yes 3 1.9066E-06 104.89 By MS/MS 1 0 1 1 4182200 0 4182200 0 1895 1710 1977 8185 6777 6777 1 0 2044200 0 DLASVNNLLK LSEVEALLASEDYGKDLASVNNLLKKHQLL EDYGKDLASVNNLLKKHQLLEADISAHEDR K D L L K K 1 0 2 1 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1085.6081 Q13813 Q13813 1689 1698 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0010145 110.67 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 3 1 42462000 1648700 27407000 13406000 1896 1268 1978 8186;8187;8188;8189;8190 6778;6779;6780 6778 3 1648700 12950000 2888500 DLASVQALLR IKEKEQLMASDDFGRDLASVQALLRKHEGL DDFGRDLASVQALLRKHEGLERDLAALEDK R D L L R K 2 1 0 1 0 1 0 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1084.6241 Q13813 Q13813 286 295 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00013682 143.89 By matching By MS/MS By MS/MS 2 1 3 3 1 1 1 4 3 103290000 1885100 60560000 40845000 1897 1268 1979 8191;8192;8193;8194;8195;8196;8197;8198 6781;6782;6783;6784 6782 4 1885100 29213000 8892600 DLATVYVDVLK WQQDEPPQSPWDRVKDLATVYVDVLKDSGR DRVKDLATVYVDVLKDSGRDYVSQFEGSAL K D L L K D 1 0 0 2 0 0 0 0 0 0 2 1 0 0 0 0 1 0 1 3 0 0 11 0 1234.6809 P02647 P02647 37 47 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.0017267 109.66 By MS/MS 9.5 0.5 1 1 2 48121000 48121000 0 0 1898 389 1980 8199;8200 6785 6785 1 29173000 0 0 DLDDFQSWLSR EASLGEASKLQQFLRDLDDFQSWLSRTQTA QFLRDLDDFQSWLSRTQTAIASEDMPNTLT R D L S R T 0 1 0 3 0 1 0 0 0 0 2 0 0 1 0 2 0 1 0 0 0 0 11 0 1380.631 Q01082 Q01082 1070 1080 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.017105 90.108 By MS/MS 1 0 1 1 6415400 0 0 6415400 1899 1128 1981 8201 6786 6786 0 0 0 1382300 DLDELSR DQASNILASFGLSARDLDELSRYPEDKITP ASFGLSARDLDELSRYPEDKITPENLPQIL R D L S R Y 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 846.40831 P43243 P43243 121 127 MATR3 Matrin-3 yes yes 2 0.042971 80.462 By matching By MS/MS 2.33 0.471 2 1 1 2 26063000 17779000 0 8284000 1900 812 1982 8202;8203;8204 6787 6787 1 21422000 0 1751400 DLDELSRYPEDK DQASNILASFGLSARDLDELSRYPEDKITP SARDLDELSRYPEDKITPENLPQILLQLKR R D L D K I 0 1 0 3 0 0 2 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 12 1 1478.6889 P43243 P43243 121 132 MATR3 Matrin-3 yes yes 2;3 1.505E-72 248.05 By matching By MS/MS 1.4 0.49 3 2 1 4 61033000 696090 0 60336000 1901 812 1983 8205;8206;8207;8208;8209 6788;6789;6790 6789 3 696090 0 13523000 DLDELSRYPEDKITPENLPQILLQLK DQASNILASFGLSARDLDELSRYPEDKITP KITPENLPQILLQLKRRRTEEGPTLSYGRD R D L L K R 0 1 1 3 0 2 3 0 0 2 6 2 0 0 3 1 1 0 1 0 0 0 26 2 3079.6441 P43243 P43243 121 146 MATR3 Matrin-3 yes yes 4 1.4501E-08 85.371 By MS/MS 2 0 1 1 1422100 0 0 1422100 1902 812 1984 8210 6791 6791 1 0 0 321360 DLDIIDNYDYSHTVK LNVQFNSPLPGDAVKDLDIIDNYDYSHTVK DLDIIDNYDYSHTVKYTPTQQGNMQVLVTY K D L V K Y 0 0 1 4 0 0 0 0 1 2 1 1 0 0 0 1 1 0 2 1 0 0 15 0 1809.8421 O75369 O75369 895 909 FLNB Filamin-B yes yes 2;3 2.7996E-07 166.14 By MS/MS 1 0 2 2 6436000 0 0 6436000 1903 254 1985 8211;8212 6792;6793 6793 2 0 0 1386700 DLDKADSMIR LAAGKVPQRAGEVERDLDKADSMIRLLFND GEVERDLDKADSMIRLLFNDVQTLKDGRHP R D L I R L 1 1 0 3 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 0 10 1 1162.5652 Q15149 Q15149 578 587 PLEC Plectin yes yes 2 5.3368E-06 155.84 By MS/MS 1 0 1 1 5956500 0 5956500 0 1904 1348 1986 8213 6794 6794 1 0 2911500 0 DLDVITIPSK CVRKRPLNKKETQMKDLDVITIPSKDVVMV ETQMKDLDVITIPSKDVVMVHEPKQKVDLT K D L S K D 0 0 0 2 0 0 0 0 0 2 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1099.6125 O00139 O00139 242 251 KIF2A Kinesin-like protein KIF2A yes yes 2 0.057371 70.908 By MS/MS 3 0 1 1 13510000 0 0 13510000 1905 104 1987 8214 6795 6795 1 0 0 2620200 DLEAHIDSANK SMAVAARKKLEMDLKDLEAHIDSANKNRDE MDLKDLEAHIDSANKNRDEAIKQLRKLQAQ K D L N K N 2 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1211.5782 P35579 P35579 1621 1631 MYH9 Myosin-9 yes yes 2;3 1.5523E-46 218.94 By matching By MS/MS By MS/MS 1.17 0.373 5 1 1 3 2 174550000 3085300 125150000 46312000 1906 752 1988 8215;8216;8217;8218;8219;8220 6796;6797;6798;6799 6798 4 3085300 61032000 9978600 DLEALLNSK TKKEGDLIAAQARLKDLEALLNSKEAALST AQARLKDLEALLNSKEAALSTALSEKRTLE K D L S K E 1 0 1 1 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 0 1001.5393 P02545 P02545 136 144 LMNA Prelamin-A/C;Lamin-A/C yes yes 1;2 0.00016464 105.94 By MS/MS By MS/MS 3.6 0.8 3 1 1 2 3 65918000 0 6044300 59874000 1907 387 1989 8221;8222;8223;8224;8225 6800;6801;6802;6803 6802 3 0 2243700 11446000 DLEAQIEAANK ALAVASKKKMEIDLKDLEAQIEAANKARDE IDLKDLEAQIEAANKARDEVIKQLRKLQAQ K D L N K A 3 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 0 1200.5986 P35580 P35580 1628 1638 MYH10 Myosin-10 yes yes 2 0.00032837 130.66 By MS/MS By MS/MS 1 0 2 1 1 19819000 0 10868000 8951100 1908 753 1990 8226;8227 6804;6805 6804 2 0 5312000 1928600 DLEDGEVPQHAGK ARRESGGRPIKPPKKDLEDGEVPQHAGKKG KKDLEDGEVPQHAGKKGKLSEHLRYCDSIL K D L G K K 1 0 0 2 0 1 2 2 1 0 1 1 0 0 1 0 0 0 0 1 0 0 13 0 1393.6474 Q15059 Q15059 292 304 BRD3 Bromodomain-containing protein 3 yes yes 2 0.0079154 92.239 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 9552100 0 3394900 6157200 1909 1342 1991 8228;8229 6806;6807 6807 2 0 1528800 1194200 DLEDLFYK GRIYVGNLPTDVREKDLEDLFYKYGRIREI PTDVREKDLEDLFYKYGRIREIELKNRHGL K D L Y K Y 0 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 0 8 0 1041.5019 Q13242 Q13242 29 36 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.0033389 105.39 By matching By MS/MS 7.33 0.471 2 1 1 2 15206000 0 2685200 12521000 1910 1232 1992 8230;8231;8232 6808 6808 1 0 1541900 2121300 DLEDSLAR SQLQKQLAAKEAKLRDLEDSLARERDTSRR AKEAKLRDLEDSLARERDTSRRLLAEKERE R D L A R E 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 917.44543 P02545 P02545 322 329 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.0018129 110.63 By matching By matching By MS/MS 3.6 0.8 3 1 1 1 1 3 69278000 3119000 3446100 62713000 1911 387 1993 8233;8234;8235;8236;8237 6809;6810 6809 2 3598600 1469100 11443000 DLEDTEANKEK QAINDKKRQIAAIHKDLEDTEANKEKNLEQ AIHKDLEDTEANKEKNLEQYNKLDQDLNEV K D L E K N 1 0 1 2 0 0 3 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 11 1 1290.5939 Q9UQE7 Q9UQE7 419 429 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 0.0021428 133.99 By MS/MS By matching 2.33 0.471 2 1 2 1 8890000 0 7521700 1368300 1912 2222 1994 8238;8239;8240 6811;6812 6811 2 0 3387100 265390 DLEEFFSTVGK RTVFCMQLAARIRPRDLEEFFSTVGKVRDV IRPRDLEEFFSTVGKVRDVRMISDRNSRRS R D L G K V 0 0 0 1 0 0 2 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1270.6081 Q14498 Q14498 168 178 RBM39 RNA-binding protein 39 yes yes 2 0.0040577 103.7 By MS/MS By matching By MS/MS 3 1.29 1 1 2 1 1 1 2 3 42899000 2724000 1007800 39167000 1913 1302 1995 8241;8242;8243;8244;8245;8246 6813;6814 6813 2 3142900 481850 6099300 DLEEILYTLGLHLSR FVYFDQSHCGYLLEKDLEEILYTLGLHLSR DLEEILYTLGLHLSRAQVKKLLNKVVLRES K D L S R A 0 1 0 1 0 0 2 1 1 1 5 0 0 0 0 1 1 0 1 0 0 0 15 0 1770.9516 Q8IX12 Q8IX12 944 958 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3 5.2703E-05 125.97 By MS/MS 2 0 1 1 1478300 0 0 1478300 1914 1579 1996 8247 6815 6815 1 0 0 334070 DLEGLSQR GCLETAEEVKRKLQKDLEGLSQRHEEKVAA VKRKLQKDLEGLSQRHEEKVAAYDKLEKTK K D L Q R H 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 916.46141 P35579 P35579 1393 1400 MYH9 Myosin-9 yes yes 2 0.00017334 141.83 By MS/MS 1 0 1 1 108290000 0 108290000 0 1915 752 1997 8248 6816 6816 1 0 52928000 0 DLEGLSQRHEEK GCLETAEEVKRKLQKDLEGLSQRHEEKVAA LQKDLEGLSQRHEEKVAAYDKLEKTKTRLQ K D L E K V 0 1 0 1 0 1 3 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 12 1 1439.7005 P35579 P35579 1393 1404 MYH9 Myosin-9 yes yes 3 0.0086837 76.326 By MS/MS 1 0 1 1 13158000 0 13158000 0 1916 752 1998 8249 6817 6817 1 0 6431400 0 DLEHLMLLIGELYK MSMQMGNEPPISLRRDLEHLMLLIGELYKK RDLEHLMLLIGELYKKNPFHLELALEYWCP R D L Y K K 0 0 0 1 0 0 2 1 1 1 5 1 1 0 0 0 0 0 1 0 0 0 14 0 1685.9062 Q92621 Q92621 438 451 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.014549 58.487 By MS/MS 1.5 0.5 1 1 2 1932700 0 0 1932700 1917 1714 1999 8250;8251 6818 6818 1 0 0 433660 DLEKPFLLPVEAVYSVPGR KLLDAVDTYIPVPARDLEKPFLLPVEAVYS PFLLPVEAVYSVPGRGTVVTGTLERGILKK R D L G R G 1 1 0 1 0 0 2 1 0 0 3 1 0 1 3 1 0 0 1 3 0 0 19 1 2128.1568 P49411 P49411 253 271 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 5.0519E-21 108.89 By MS/MS By MS/MS 5.6 0.8 3 1 1 1 4 18736000 0 6516600 12219000 1918 856 2000 8252;8253;8254;8255;8256 6819;6820;6821;6822;6823 6821 5 0 1679800 1830100 DLELPDMHMR ISASSSTSRRRQGQRDLELPDMHMRDLVGM RQGQRDLELPDMHMRDLVGMGHHFLPSEPT R D L M R D 0 1 0 2 0 0 1 0 1 0 2 0 2 0 1 0 0 0 0 0 0 0 10 0 1255.5689 Q8IXK0 Q8IXK0 768 777 PHC2 Polyhomeotic-like protein 2 yes yes 2 0.00023946 122.52 By MS/MS 5 0 1 1 4750600 0 0 4750600 1919 1582 2001 8257 6824 6824 1 0 0 662620 DLENLGLTHLIGSPFLR PESTVYDDYKFVTKKDLENLGLTHLIGSPF ENLGLTHLIGSPFLRAYMHGFFMDIRLYHK K D L L R A 0 1 1 1 0 0 1 2 1 1 5 0 0 1 1 1 1 0 0 0 0 0 17 0 1894.0312 Q9BSC4 Q9BSC4 380 396 NOL10 Nucleolar protein 10 yes yes 3 0.00058202 80.738 By MS/MS 3 0 1 1 9929800 0 0 9929800 1920 1895 2002 8258 6825 6825 1 0 0 1925900 DLESLFHR KKREGELTVAQGRVKDLESLFHRSEVELAA VAQGRVKDLESLFHRSEVELAAALSDKRGL K D L H R S 0 1 0 1 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 1015.5087 Q03252 Q03252 151 158 LMNB2 Lamin-B2 yes yes 2 0.011508 91.906 By matching By MS/MS 3 0 2 1 1 24913000 1013600 0 23899000 1921 1156 2003 8259;8260 6826 6826 1 1169500 0 4635300 DLEWVER NDVNGLKQCLAEFKRDLEWVERLDVTLGPV QCLAEFKRDLEWVERLDVTLGPVPEIGGSE R D L E R L 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 945.4556 Q99848 Q99848 63 69 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2 0.018568 105.12 By MS/MS 5 0 1 1 18619000 0 0 18619000 1922 1866 2004 8261 6827 6827 1 0 0 2597000 DLFDFSTR TELEDEVRNLRKINRDLFDFSTRFITRPAK NLRKINRDLFDFSTRFITRPAK________ R D L T R F 0 1 0 2 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 0 0 0 8 0 999.46616 Q9BV38 Q9BV38 418 425 WDR18 WD repeat-containing protein 18 yes yes 2 5.3613E-06 157.52 By MS/MS 5 0 1 1 12920000 0 0 12920000 1923 1910 2005 8262 6828 6828 1 0 0 1802100 DLFEDELVPLFEK QPSVGTEIFVGKIPRDLFEDELVPLFEKAG PRDLFEDELVPLFEKAGPIWDLRLMMDPLT R D L E K A 0 0 0 2 0 0 3 0 0 0 3 1 0 2 1 0 0 0 0 1 0 0 13 0 1592.7974 O60506 O60506 172 184 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2 0.0009427 115.41 By MS/MS By MS/MS By MS/MS 3.5 1.5 1 2 2 1 2 2 2 31607000 1768700 2710200 27128000 1924 227 2006 8263;8264;8265;8266;8267;8268 6829;6830;6831;6832 6832 4 1565100 911280 5346200 DLFHGATFVPR PYHKQRLAEYYGLYRDLFHGATFVPRVPLH GLYRDLFHGATFVPRVPLHVAYAVGEDDLM R D L P R V 1 1 0 1 0 0 0 1 1 0 1 0 0 2 1 0 1 0 0 1 0 0 11 0 1258.6459 Q96DV4 Q96DV4 160 170 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 3 0.0017642 91.937 By MS/MS 5 0 1 1 2998300 0 0 2998300 1925 1769 2007 8269 6833 6833 1 0 0 418210 DLFPYEESK VFFFGTHETAFLGPKDLFPYEESKEKFGKP AFLGPKDLFPYEESKEKFGKPNKRKGFSEG K D L S K E 0 0 0 1 0 0 2 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 9 0 1126.5183 P51858 P51858 62 70 HDGF Hepatoma-derived growth factor yes yes 2 0.023519 79.906 By MS/MS 5 0 1 1 9433300 0 0 9433300 1926 899 2008 8270 6834 6834 1 0 0 1315800 DLFQVAFNR KGVTDHTQRLSIITKDLFQVAFNRVARGML LSIITKDLFQVAFNRVARGMLHQDHITFAM K D L N R V 1 1 1 1 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 9 0 1108.5665 Q14204 Q14204 3862 3870 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 5.9558E-05 146.94 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 7476800 0 4836200 2640700 1927 1292 2009 8271;8272;8273 6835;6836 6836 2 0 2363800 574410 DLGEEHFK FRRDTHKSEIAHRFKDLGEEHFKGLVLIAF EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP K D L F K G 0 0 0 1 0 0 2 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 973.45051 CON__P02769 CON__P02769 37 44 yes yes 2 0.019042 85.064 By MS/MS By matching 5.62 2.83 1 1 1 1 1 1 1 1 7 1 211130000 207910000 0 3223800 + 1928 45 2010 8274;8275;8276;8277;8278;8279;8280;8281 6837;6838;6839 6839 3 199390000 0 572050 DLGEELEALK ESERASRNKAEKQKRDLGEELEALKTELED EKQKRDLGEELEALKTELEDTLDSTAAQQE R D L L K T 1 0 0 1 0 0 3 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1115.571 P35579 P35579 1136 1145 MYH9 Myosin-9 no no 2 0.0051365 97.635 By MS/MS By MS/MS 1 0 2 1 1 23435000 0 16927000 6507800 1929 752 2011 8282;8283 6840;6841 6840 2 0 8273700 1402200 DLGEENFK FRRDAHKSEVAHRFKDLGEENFKALVLIAF EVAHRFKDLGEENFKALVLIAFAQYLQQCP K D L F K A 0 0 1 1 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 950.43453 CON__P02768-1;P02768 CON__P02768-1 37 44 ALB Serum albumin yes no 2 0.0036154 104.45 By MS/MS 9.5 0.5 1 1 2 126790000 126790000 0 0 + 1930 44 2012 8284;8285 6842 6842 1 78248000 0 0 DLGFNGAPYR EALTKEELEFEVPFRDLGFNGAPYRSTCLL EVPFRDLGFNGAPYRSTCLLQPTSSALVNA R D L Y R S 1 1 1 1 0 0 0 2 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1108.5302 Q9Y5B9 Q9Y5B9 803 812 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00047348 136.16 By matching By MS/MS By MS/MS 1.83 0.687 2 3 1 2 3 1 44972000 4282400 23954000 16735000 1931 2296 2013 8286;8287;8288;8289;8290;8291 6843;6844;6845 6844 3 4688300 10845000 3781800 DLGVLDVIFHPTQPWVFSSGADGTVR LLVPVKVLKGHVLTRDLGVLDVIFHPTQPW TQPWVFSSGADGTVRLFT____________ R D L V R L 1 1 0 3 0 1 0 3 1 1 2 0 0 2 2 2 2 1 0 4 0 0 26 0 2812.4184 Q14137 Q14137 718 743 BOP1 Ribosome biogenesis protein BOP1 yes yes 2;3 2.3891E-52 195.97 By MS/MS 2 0.707 1 2 1 4 16744000 0 0 16744000 1932 1283 2014 8292;8293;8294;8295 6846;6847 6846 2 0 0 3702300 DLHQGIEAASDEEDLR HLDLSSSEKFHELHRDLHQGIEAASDEEDL LHQGIEAASDEEDLRWWRSTHGPGMAMNWP R D L L R W 2 1 0 3 0 1 3 1 1 1 2 0 0 0 0 1 0 0 0 0 0 0 16 0 1796.8177 Q9UKS6 Q9UKS6 267 282 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes yes 2;3 1.6265E-12 177.54 By MS/MS 4.33 0.471 2 1 3 20252000 0 0 20252000 1933 2183 2015 8296;8297;8298 6848;6849 6849 2 0 0 3266900 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK NAQMVEDQGFLDSLRDLIADSNPMVVANAV PNSNLLDLNPQNINKLLTALNECTEWGQIF R D L N K L 5 0 7 3 0 1 2 0 1 3 5 1 1 0 3 5 0 0 0 3 0 0 40 0 4227.1118 P63010 P63010 167 206 AP2B1 AP-2 complex subunit beta yes yes 3 2.2142E-34 97.446 By MS/MS 2 0 1 1 4647400 0 0 4647400 1934 1057 2016 8299 6850 6850 1 0 0 1050200 DLIDFDDR PHRNEKLTVDSAIARDLIDFDDRQQIYAAE VDSAIARDLIDFDDRQQIYAAEKAITGFDD R D L D R Q 0 1 0 4 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 1007.456 P15924 P15924 2076 2083 DSP Desmoplakin yes yes 2 0.0017016 112.17 By MS/MS 1 0 1 1 6261700 0 0 6261700 1935 572 2017 8300 6851 6851 1 0 0 1349200 DLIDNSFNR LALGAVIASSKKAKRDLIDNSFNRYTFNED SKKAKRDLIDNSFNRYTFNEDEGELPEWFV R D L N R Y 0 1 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1092.52 Q8IY81 Q8IY81 683 691 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.00071302 113.91 By MS/MS 3 0.816 1 1 1 3 16164000 0 16164000 0 1936 1590 2018 8301;8302;8303 6852 6852 1 0 6972900 0 DLIGHIVEFSQDQHGSR LEDFRNNRFPNLQLRDLIGHIVEFSQDQHG IGHIVEFSQDQHGSRFIQQKLERATPAERQ R D L S R F 0 1 0 2 0 2 1 2 2 2 1 0 0 1 0 2 0 0 0 1 0 0 17 0 1936.9391 Q8TB72 Q8TB72 726 742 PUM2 Pumilio homolog 2 yes yes 3 0.0011354 74.428 By MS/MS 2 0 1 1 6343800 0 0 6343800 1937 1655 2019 8304 6853 6853 0 0 0 1433600 DLIGVQNLLK IREKEPIAASTNRGKDLIGVQNLLKKHQAL TNRGKDLIGVQNLLKKHQALQAEIAGHEPR K D L L K K 0 0 1 1 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1111.6601 Q13813 Q13813 815 824 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0075219 92.47 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 21160000 232060 9295000 11633000 1938 1268 2020 8305;8306;8307;8308 6854;6855 6854 2 232060 4543200 2525200 DLIHGAPVGK VLGEKTSNLRVKTLRDLIHGAPVGKPAANR VKTLRDLIHGAPVGKPAANRAFVSMVYSEE R D L G K P 1 0 0 1 0 0 0 2 1 1 1 1 0 0 1 0 0 0 0 1 0 0 10 0 1005.5607 Q14683 Q14683 63 72 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.026237 79.906 By MS/MS 1.5 0.5 1 1 2 21176000 0 0 21176000 1939 1312 2021 8309;8310 6856;6857 6856 1 0 0 4649800 DLIHGAPVGKPAANR VLGEKTSNLRVKTLRDLIHGAPVGKPAANR DLIHGAPVGKPAANRAFVSMVYSEEGAEDR R D L N R A 3 1 1 1 0 0 0 2 1 1 1 1 0 0 2 0 0 0 0 1 0 0 15 1 1514.8318 Q14683 Q14683 63 77 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00010008 155.15 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 126860000 0 15235000 111620000 1940 1312 2022 8311;8312;8313;8314;8315 6858;6859;6860;6861;6862 6862 5 0 6860400 24397000 DLILADYGK TLTDEEWIKVEVQLKDLILADYGKKNNVNV VEVQLKDLILADYGKKNNVNVASLTQSEIR K D L G K K 1 0 0 2 0 0 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 0 9 0 1006.5335 Q6P2Q9 Q6P2Q9 1985 1993 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.019656 82.452 By MS/MS 1 0 1 1 12448000 0 12448000 0 1941 1490 2023 8316 6863 6863 1 0 6084600 0 DLIQDQNMDEK LQSSVVATSKERTRRDLIQDQNMDEKGKQR RTRRDLIQDQNMDEKGKQRNRRIFGLLMGT R D L E K G 0 0 1 3 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 11 0 1347.5976 Q9H307 Q9H307 127 137 PNN Pinin yes yes 2 0.0017267 109.66 By MS/MS 1.5 0.5 1 1 2 24792000 0 0 24792000 1942 1978 2024 8317;8318 6864;6865 6865 2 0 0 5484700 DLIQMLVQR EKIQGKITIENRSKKDLIQMLVQRGYESDP ENRSKKDLIQMLVQRGYESDPVKAWKEAQE K D L Q R G 0 1 0 1 0 2 0 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1114.6169 Q02880 Q02880 1093 1101 TOP2B DNA topoisomerase 2-beta yes yes 2 1.9215E-05 151.27 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 37546000 0 8594200 28952000 1943 1150 2025 8319;8320;8321;8322;8323 6866;6867;6868;6869 6868 4 0 4068800 6285400 DLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINK NAQLVEDQGFLDTLKDLISDSNPMVVANAV PSSNLLDLNPQSINKLLTALNECTEWGQIF K D L N K L 5 0 5 3 0 1 2 0 1 3 5 1 1 0 3 7 0 0 0 3 0 0 40 0 4173.09 Q10567 Q10567 167 206 AP1B1 AP-1 complex subunit beta-1 yes yes 4 0.016784 21.829 By MS/MS 2 0 1 1 4511600 0 0 4511600 1944 1193 2026 8324 6870 6870 1 0 0 1019500 DLISHDEMFSDIYK ______________________________ RDLISHDEMFSDIYKIREIADGLCLEVEGK R D L Y K I 0 0 0 3 0 0 1 0 1 2 1 1 1 1 0 2 0 0 1 0 0 0 14 0 1711.7763 P13693 P13693 6 19 TPT1 Translationally-controlled tumor protein yes yes 2;3 0.00028543 150.09 By MS/MS 7 0 2 2 15494000 0 0 15494000 1945 550 2027 8325;8326 6871;6872 6872 2 0 0 2749300 DLKDYFSK WKMFIGGLSWDTTKKDLKDYFSKFGEVVDC SWDTTKKDLKDYFSKFGEVVDCTLKLDPIT K D L S K F 0 0 0 2 0 0 0 0 0 0 1 2 0 1 0 1 0 0 1 0 0 0 8 1 1014.5022 Q14103 Q14103 112 119 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 0.00045564 149.82 By MS/MS By MS/MS 3.86 1.81 1 1 1 1 1 2 5 2 84046000 0 30760000 53287000 1946 1281 2028 8327;8328;8329;8330;8331;8332;8333 6873;6874 6874 2 0 10937000 7507800 DLKDYFTK GKMFVGGLSWDTSKKDLKDYFTKFGEVVDC SWDTSKKDLKDYFTKFGEVVDCTIKMDPNT K D L T K F 0 0 0 2 0 0 0 0 0 0 1 2 0 1 0 0 1 0 1 0 0 0 8 1 1028.5179 Q99729 Q99729 84 91 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2 0.0010061 144.9 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 162170000 0 70764000 91409000 1947 1861 2029 8334;8335;8336;8337;8338;8339 6875;6876;6877;6878 6875 4 0 22158000 13212000 DLKPQNLLIDDKGTIK LQGIVFCHSRRVLHRDLKPQNLLIDDKGTI LKPQNLLIDDKGTIKLADFGLARAFGIPIR R D L I K L 0 0 1 3 0 1 0 1 0 2 3 3 0 0 1 0 1 0 0 0 0 0 16 2 1810.02 P06493 P06493 128 143 CDK1 Cyclin-dependent kinase 1 yes yes 4 0.0051237 64.565 By matching By MS/MS 6 0 2 1 1 7709000 0 2348900 5360100 1948 443 2030 8340;8341 6879 6879 1 0 813110 801930 DLKPSNIFLVDTK TKGVDYIHSKKLIHRDLKPSNIFLVDTKQV HRDLKPSNIFLVDTKQVKIGDFGLVTSLKN R D L T K Q 0 0 1 2 0 0 0 0 0 1 2 2 0 1 1 1 1 0 0 1 0 0 13 1 1488.8188 P19525 P19525 414 426 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2;3 0.00055911 120.53 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 39721000 0 7287400 32433000 1949 609 2031 8342;8343;8344;8345 6880;6881;6882;6883 6883 4 0 2667200 6290500 DLLAVVFYGTEK CIQSVYISKIISSDRDLLAVVFYGTEKDKN SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE R D L E K D 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 0 1 0 1 2 0 0 12 0 1353.718 P12956 P12956 81 92 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00033516 129.16 By matching By MS/MS By MS/MS 2.67 0.471 1 2 1 1 1 7463200 623390 1097700 5742100 1950 541 2032 8346;8347;8348 6884;6885 6885 1 751110 467970 1113700 DLLDLLVEAK LATSFFNERNINITKDLLDLLVEAKQEVPS INITKDLLDLLVEAKQEVPSWLENMAYEHH K D L A K Q 1 0 0 2 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 10 0 1127.6438 O00571;O15523 O00571 555 564 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.00060088 133.57 By matching By MS/MS By MS/MS 2.86 0.99 1 1 3 2 1 2 4 12140000 1191000 1711300 9237300 1951 131 2033 8349;8350;8351;8352;8353;8354;8355 6886;6887;6888;6889;6890 6890 5 1374100 679790 1823300 DLLDQILMLDPAK QRLPEDQRKKVHQLKDLLDQILMLDPAKRI LKDLLDQILMLDPAKRISINQALQHAFIQE K D L A K R 1 0 0 3 0 1 0 0 0 1 4 1 1 0 1 0 0 0 0 0 0 0 13 0 1483.7956 Q13523 Q13523 978 990 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 2 0.00041051 124.42 By MS/MS 2 0.816 1 1 1 3 8267900 0 0 8267900 1952 1255 2034 8356;8357;8358 6891;6892 6892 2 0 0 1822800 DLLDTVLPHLYNETK VTFNSAAHNKPSLIRDLLDTVLPHLYNETK DLLDTVLPHLYNETKVRKELIREVEMGPFK R D L T K V 0 0 1 2 0 0 1 0 1 0 4 1 0 0 1 0 2 0 1 1 0 0 15 0 1769.92 Q86VP6 Q86VP6 1043 1057 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 3 0.016098 54.234 By MS/MS 2 0 1 1 2504100 0 0 2504100 1953 1554 2035 8359 6893 6893 1 0 0 565870 DLLFILTAK KIAVMELFRPKGESKDLLFILTAKYNACIL PKGESKDLLFILTAKYNACILEYKQSGESI K D L A K Y 1 0 0 1 0 0 0 0 0 1 3 1 0 1 0 0 1 0 0 0 0 0 9 0 1032.6219 Q16531 Q16531 75 83 DDB1 DNA damage-binding protein 1 yes yes 2 0.061376 68.224 By MS/MS 1.5 0.5 1 1 2 2468500 0 0 2468500 1954 1387 2036 8360;8361 6894 6894 1 0 0 533820 DLLFRDDTVCLAK TDCSGNFCLFRSETKDLLFRDDTVCLAKLH TKDLLFRDDTVCLAKLHDRNTYEKYLGEEY K D L A K L 1 1 0 3 1 0 0 0 0 0 3 1 0 1 0 0 1 0 0 1 0 0 13 1 1564.7919 P02787 P02787 647 659 TF Serotransferrin yes yes 2 0.0024309 143.97 By MS/MS 9 0 1 1 3591400 3591400 0 0 1955 399 2037 8362 6895 6895 1 2015900 0 0 DLLHLPELFSPGMLVR TKKLNEQVTQEQPLKDLLHLPELFSPGMLV LLHLPELFSPGMLVRCVVSSLGITDRGKKS K D L V R C 0 1 0 1 0 0 1 1 1 0 5 0 1 1 2 1 0 0 0 1 0 0 16 0 1835.9968 Q14690 Q14690 135 150 PDCD11 Protein RRP5 homolog yes yes 3 0.0017891 73.022 By MS/MS 1 0 1 1 4946000 0 0 4946000 1956 1314 2038 8363 6896 6896 1 0 0 1065700 DLLHNEDRHDDYFQER ERSPSRSRESSRRHRDLLHNEDRHDDYFQE LLHNEDRHDDYFQERNREHERHRDRERDRH R D L E R N 0 2 1 4 0 1 2 0 2 0 2 0 0 1 0 0 0 0 1 0 0 0 16 1 2100.9249 Q8N684 Q8N684 440 455 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 3;4 7.8389E-06 127.75 By MS/MS 4 0 2 2 29709000 0 0 29709000 1957 1610 2039 8364;8365 6897;6898 6898 2 0 0 4852500 DLLHPSLEEEK ______________________________ PLARDLLHPSLEEEKKKHKKKRLVQSPNSY R D L E K K 0 0 0 1 0 0 3 0 1 0 3 1 0 0 1 1 0 0 0 0 0 0 11 0 1308.6561 Q71UM5 Q71UM5 6 16 RPS27L 40S ribosomal protein S27-like yes yes 2;3 0.0072023 96.665 By matching By MS/MS By MS/MS 8.17 1.34 1 1 1 2 1 2 3 1 49706000 10948000 38758000 0 1958 1516 2040 8366;8367;8368;8369;8370;8371 6899;6900 6899 2 16569000 32190000 0 DLLHPSPEEEK ______________________________ PLAKDLLHPSPEEEKRKHKKKRLVQSPNSY K D L E K R 0 0 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 11 0 1292.6248 P42677 P42677 6 16 RPS27 40S ribosomal protein S27 yes yes 2;3 2.7203E-19 190.96 By MS/MS 9 0 2 2 199470000 0 0 199470000 1959 804 2041 8372;8373 6901;6902 6901 2 0 0 63719000 DLLHPSPEEEKR ______________________________ LAKDLLHPSPEEEKRKHKKKRLVQSPNSYF K D L K R K 0 1 0 1 0 0 3 0 1 0 2 1 0 0 2 1 0 0 0 0 0 0 12 1 1448.726 P42677 P42677 6 17 RPS27 40S ribosomal protein S27 yes yes 2;3 0.00017073 140.16 By matching By MS/MS By MS/MS 9.25 0.433 3 1 1 1 2 74315000 2927500 3810200 67577000 1960 804 2042 8374;8375;8376;8377 6903;6904;6905 6905 3 1643200 19276000 21587000 DLLHPSPEEEKRK ______________________________ AKDLLHPSPEEEKRKHKKKRLVQSPNSYFM K D L R K H 0 1 0 1 0 0 3 0 1 0 2 2 0 0 2 1 0 0 0 0 0 0 13 2 1576.8209 P42677 P42677 6 18 RPS27 40S ribosomal protein S27 yes yes 3 8.6093E-05 133.71 By matching By MS/MS 9.5 0.5 1 1 1 1 8289300 559850 7729400 0 1961 804 2043 8378;8379 6906 6906 1 314250 39104000 0 DLLILQQLLMR RGVHKIASTRFLICRDLLILQQLLMRLGDA LICRDLLILQQLLMRLGDAVIWGTGQLFQA R D L M R L 0 1 0 1 0 2 0 0 0 1 5 0 1 0 0 0 0 0 0 0 0 0 11 0 1354.8006 Q12769 Q12769 733 743 NUP160 Nuclear pore complex protein Nup160 yes yes 2 0.00023146 135.83 By MS/MS 1.5 0.5 1 1 2 14282000 0 0 14282000 1962 1196 2044 8380;8381 6907 6907 1 0 0 3205700 DLLLDPAWEK GSMGDYMAQEDDWDRDLLLDPAWEKQQRKT DDWDRDLLLDPAWEKQQRKTFTAWCNSHLR R D L E K Q 1 0 0 2 0 0 1 0 0 0 3 1 0 0 1 0 0 1 0 0 0 0 10 0 1198.6234 O43707;Q08043;P12814;P35609 O43707 41 50 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 2 0.050681 72.643 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 29157000 0 6065500 23092000 1963 210;540 2045 8382;8383;8384 6908;6909 6908 2 0 2795000 5218200 DLLLNTMSQEEK RLGLIEWLENTVTLKDLLLNTMSQEEKAAY TLKDLLLNTMSQEEKAAYLSDPRAPPCEYK K D L E K A 0 0 1 1 0 1 2 0 0 0 3 1 1 0 0 1 1 0 0 0 0 0 12 0 1419.6915 P78527 P78527 3814 3825 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.0529E-05 157.66 By MS/MS By MS/MS 1 0 2 1 1 22411000 0 5063900 17347000 1964 1089 2046 8385;8386 6910;6911 6911 2 0 2475200 3737800 DLLPSDMAVALLEAQAGTGHIIDPATSAR EEAGQKLSIYNALKKDLLPSDMAVALLEAQ QAGTGHIIDPATSARLTVDEAVRAGLVGPE K D L A R L 6 1 0 3 0 1 1 2 1 2 4 0 1 0 2 2 2 0 0 1 0 0 29 0 2932.4964 Q15149 Q15149 3184 3212 PLEC Plectin yes yes 3 1.1074E-08 75.103 By MS/MS By matching 1.5 0.5 2 2 3 1 9164800 0 7492100 1672700 1965 1348 2047;2048 8387;8388;8389;8390 6912;6913;6914 6912 603 3 0 3649600 377990 DLLPYGFAIHHAGMTR VLRTEAEQCKNLELKDLLPYGFAIHHAGMT LLPYGFAIHHAGMTRVDRTLVEDLFADKHI K D L T R V 2 1 0 1 0 0 0 2 2 1 2 0 1 1 1 0 1 0 1 0 0 0 16 0 1797.8985 O75643 O75643 776 791 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3;4 3.5165E-08 163.99 By MS/MS By MS/MS 1.2 0.4 4 1 1 4 83430000 0 2281200 81149000 1966 277 2049 8391;8392;8393;8394;8395 6915;6916;6917;6918 6916 4 0 1115000 17509000 DLLQADQLGSLK LKDGIQLSEYLPEVKDLLQADQLGSLKSNP EVKDLLQADQLGSLKSNPYFEFVLKANYEY K D L L K S 1 0 0 2 0 2 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1299.7034 Q8WUM0 Q8WUM0 1124 1135 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.0055081 102.06 By MS/MS 2 0.816 1 1 1 3 14030000 0 0 14030000 1967 1675 2050 8396;8397;8398 6919 6919 1 0 0 3087600 DLLQLGGELAR GFRRLVSEVKMFTERDLLQLGGELARTSRA FTERDLLQLGGELARTSRAVQEAGLGLSTG R D L A R T 1 1 0 1 0 1 1 2 0 0 4 0 0 0 0 0 0 0 0 0 0 0 11 0 1183.6561 Q5TZA2 Q5TZA2 320 330 CROCC Rootletin yes yes 2 0.0042316 103.26 By MS/MS 1 0 1 1 3446400 0 0 3446400 1968 1458 2051 8399 6920 6920 1 0 0 742580 DLLSTQPSETLASSDSFASTQPTHSWK LKLKKDLQEVIELTKDLLSTQPSETLASSD SSDSFASTQPTHSWKVGDKCMAVWSEDGQC K D L W K V 2 0 0 2 0 2 1 0 1 0 3 1 0 1 2 7 4 1 0 0 0 0 27 0 2920.3727 O75940 O75940 48 74 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 3 6.1787E-43 167.51 By matching By MS/MS 6 0.707 1 2 1 2 2 43490000 0 9760800 33729000 1969 292 2052 8400;8401;8402;8403 6921 6921 1 0 3152900 5194800 DLLVLLNEILEQVK TKALSSLELSSHLAKDLLVLLNEILEQVKD KDLLVLLNEILEQVKDRTCLRALEKIKIQL K D L V K D 0 0 1 1 0 1 2 0 0 1 5 1 0 0 0 0 0 0 0 2 0 0 14 0 1637.9604 Q9BPX3 Q9BPX3 866 879 NCAPG Condensin complex subunit 3 yes yes 2 0.026969 70.977 By MS/MS 2 0 1 1 447830 0 0 447830 1970 1873 2053 8404 6922 6922 1 0 0 101200 DLLVQQASQCLSK RMKGLEEPEMDPKSRDLLVQQASQCLSKLV SRDLLVQQASQCLSKLVQIASRTKRNFILD R D L S K L 1 0 0 1 1 3 0 0 0 0 3 1 0 0 0 2 0 0 0 1 0 0 13 0 1488.7606 Q1KMD3 Q1KMD3 509 521 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 1.4075E-05 162.36 By MS/MS 2 0 1 1 14849000 0 0 14849000 1971 1404 2054 8405 6923 6923 1 0 0 3355700 DLLVQYATGK QDSDSESEDDGPTARDLLVQYATGKKSSKN GPTARDLLVQYATGKKSSKNKKKLEKAMKV R D L G K K 1 0 0 1 0 1 0 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 10 0 1106.5972 Q9NVU7 Q9NVU7 245 254 SDAD1 Protein SDA1 homolog yes yes 2 0.018636 83.783 By MS/MS 3 0 1 1 8676900 0 0 8676900 1972 2071 2055 8406 6924 6924 1 0 0 1682900 DLMACAQTGSGK TPVQKHAIPIIKEKRDLMACAQTGSGKTAA EKRDLMACAQTGSGKTAAFLLPILSQIYSD R D L G K T 2 0 0 1 1 1 0 2 0 0 1 1 1 0 0 1 1 0 0 0 0 0 12 0 1237.5431 O00571;O15523;Q9NQI0 O00571 219 230 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 2 0.0006009 123.75 By MS/MS 3 0 1 1 11583000 0 0 11583000 1973 131 2056 8407 6925 6925 1 0 0 2246500 DLMGHHLLYLAHQLSK D L S K 1 0 0 1 0 1 0 1 3 0 5 1 1 0 0 1 0 0 1 0 0 0 16 0 1874.9825 REV__Q15573 yes yes 2 0.013758 69.346 By MS/MS 8.67 0.471 1 2 3 23848000 23848000 0 0 + 1974 2334 2057 8408;8409;8410 6926 6926 748 1 16625000 0 0 DLMHGLITLMLDSR QIESLAREASTGVLKDLMHGLITLMLDSRI KDLMHGLITLMLDSRIEDLEEGQQVIRSVN K D L S R I 0 1 0 2 0 0 0 1 1 1 4 0 2 0 0 1 1 0 0 0 0 0 14 0 1613.8269 Q14008 Q14008 1641 1654 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00011954 116.51 By MS/MS 1.33 0.471 2 1 3 10050000 0 0 10050000 1975 1279 2058;2059 8411;8412;8413 6927;6928;6929 6929 590 3 0 0 2179200 DLMLQSRTREILTR ______________________________ RDLMLQSRTREILTRTTVDHMAIIKKYTSG R D L T R T 0 3 0 1 0 1 1 0 0 1 3 0 1 0 0 1 2 0 0 0 0 0 14 2 1730.9461 B3EUR6 B3EUR6 9 22 yes yes 2 0.035061 57.888 By MS/MS 5 0 1 1 6848100 0 0 6848100 1976 20 2060 8414 6930 6930 6 0 0 0 955190 DLMLWMEDVIR LVDTGDKFRFFSMVRDLMLWMEDVIRQIEA SMVRDLMLWMEDVIRQIEAQEKPRDVSSVE R D L I R Q 0 1 0 2 0 0 1 0 0 1 2 0 2 0 0 0 0 1 0 1 0 0 11 0 1419.689 Q01082 Q01082 1922 1932 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 1.7711E-09 166.09 By MS/MS 1.5 0.5 1 1 2 8630300 0 0 8630300 1977 1128 2061 8415;8416 6931 6931 1 0 0 1876300 DLMSWINGIR LGDSHDLQRFLSDFRDLMSWINGIRGLVSS LSDFRDLMSWINGIRGLVSSDELAKDVTGA R D L I R G 0 1 1 1 0 0 0 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 10 0 1203.607 Q13813 Q13813 1350 1359 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 3.9494E-11 170.66 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 12754000 0 2119300 10635000 1978 1268 2062 8417;8418;8419 6932;6933;6934 6934 3 0 1007500 2291500 DLMVGDEASELR PIIRSTTKVGNIEIKDLMVGDEASELRSML EIKDLMVGDEASELRSMLEVNYPMENGIVR K D L L R S 1 1 0 2 0 0 2 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 12 0 1333.6184 P61160 P61160 54 65 ACTR2 Actin-related protein 2 yes yes 2 0.0007113 121.5 By MS/MS 5 0 1 1 8914700 0 0 8914700 1979 981 2063 8420 6935 6935 1 0 0 1243400 DLNAAEALQR RVQHKQQQLPDGTGRDLNAAEALQRRHCAY DGTGRDLNAAEALQRRHCAYEHDIQALSPQ R D L Q R R 3 1 1 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1099.5622 O15020 O15020 1831 1840 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.041819 74.941 By MS/MS 1 0 1 1 36773000 0 0 36773000 1980 160 2064 8421 6936 6936 1 0 0 7923400 DLNLDGIIAEVK HISETSVIVKMDNSRDLNLDGIIAEVKAQY NSRDLNLDGIIAEVKAQYEEVARRSRADAE R D L V K A 1 0 1 2 0 0 1 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1298.7082 CON__Q6ISB0;CON__Q9NSB2;Q9NSB2 CON__Q6ISB0 327 338 KRT84 Keratin, type II cuticular Hb4 yes no 2 0.025625 81.017 By MS/MS 5 0 1 1 1653500 1653500 0 0 + 1981 92 2065 8422 6937 6937 1 1324700 0 0 DLNSQADSLMTSSAFDTSQVK QLLEADISAHEDRLKDLNSQADSLMTSSAF DSLMTSSAFDTSQVKDKRDTINGRFQKIKS K D L V K D 2 0 1 3 0 2 0 0 0 0 2 1 1 1 0 5 2 0 0 1 0 0 21 0 2244.0216 Q13813 Q13813 1716 1736 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.2454E-70 231.17 By MS/MS By matching 1.33 0.471 2 1 2 1 13360000 0 10245000 3115100 1982 1268 2066 8423;8424;8425 6938;6939 6939 2 0 5007500 703950 DLNSQLEYLR QQYRSAVCKLDSVNKDLNSQLEYLRTPDMR DSVNKDLNSQLEYLRTPDMRKKKQELDEHE K D L L R T 0 1 1 1 0 1 1 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1249.6303 A6NHR9 A6NHR9 1925 1934 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 5.3248E-08 163.32 By MS/MS 1 0 1 1 6774700 0 6774700 0 1983 15 2067 8426 6940 6940 1 0 3311400 0 DLNYCFSGMSDHR GYNDGYGFGSDRFGRDLNYCFSGMSDHRYG GRDLNYCFSGMSDHRYGDGGSTFQSTTGHC R D L H R Y 0 1 1 2 1 0 0 1 1 0 1 0 1 1 0 2 0 0 1 0 0 0 13 0 1600.6399 P31943;P55795 P31943 263 275 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 0.00018717 149.31 By matching By MS/MS 4.62 0.992 1 3 2 2 1 7 74122000 5336300 0 68786000 1984 722;944 2068 8427;8428;8429;8430;8431;8432;8433;8434 6941;6942;6943 6942 3 4163300 0 10209000 DLPDVQELITQVR NEVNSDAGAFKNSLKDLPDVQELITQVRSE LKDLPDVQELITQVRSEKCSLQAAAILDAN K D L V R S 0 1 0 2 0 2 1 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 13 0 1524.8148 Q9UHB9 Q9UHB9 509 521 SRP68 Signal recognition particle subunit SRP68 yes yes 2 0.002013 108.7 By MS/MS 3 0 1 1 4274500 0 0 4274500 1985 2152 2069 8435 6944 6944 1 0 0 829050 DLPEHAVLK DYKQRTQKKAEVEGKDLPEHAVLKMKGNFT AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K D L L K M 1 0 0 1 0 0 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1020.5604 Q00839 Q00839 627 635 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 0.0023273 104.44 By MS/MS By MS/MS 2.88 1.83 2 2 2 1 1 3 5 448610000 0 207250000 241360000 1986 1127 2070 8436;8437;8438;8439;8440;8441;8442;8443 6945;6946;6947;6948;6949;6950 6946 6 0 92535000 51326000 DLPLLLFR GLNGAVFRPEVPLRRDLPLLLFRTQTSDPA PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL R D L F R T 0 1 0 1 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 8 0 985.59605 O43175 O43175 462 469 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.00028668 132.96 By MS/MS By MS/MS By MS/MS 5.27 2.6 1 2 3 1 1 1 2 1 4 6 54974000 3070000 20434000 31469000 1987 190 2071 8444;8445;8446;8447;8448;8449;8450;8451;8452;8453;8454 6951;6952;6953;6954;6955 6952 5 2395100 14119000 7468700 DLPNIEVR ARMRHIPLAPGSDWRDLPNIEVRLSDGTMA APGSDWRDLPNIEVRLSDGTMARKLRYTHH R D L V R L 0 1 1 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 8 0 954.51345 P26358 P26358 1438 1445 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.024004 81.191 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 23194000 0 5672500 17522000 1988 667 2072 8455;8456;8457 6956;6957 6957 2 0 2772700 3814600 DLPRPSEVNETILRPLNVEPPLTDLQK ERVKEMKRMHKAVQKDLPRPSEVNETILRP LRPLNVEPPLTDLQKSEELIKKEMITMLHY K D L Q K S 0 2 2 2 0 1 3 0 0 1 5 1 0 0 5 1 2 0 0 2 0 0 27 2 3082.6663 Q99459 Q99459 544 570 CDC5L Cell division cycle 5-like protein yes yes 4 5.9363E-15 96.338 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 1 4 34906000 0 7096900 27809000 1989 1843 2073 8458;8459;8460;8461;8462 6958;6959;6960;6961 6959 4 0 3195800 5365600 DLPSADSVQYR HFFHSLMLYHEHLRKDLPSADSVQYRHLPS HLRKDLPSADSVQYRHLPSRGITQKEQDGL K D L Y R H 1 1 0 2 0 1 0 0 0 0 1 0 0 0 1 2 0 0 1 1 0 0 11 0 1249.5939 Q92621 Q92621 572 582 NUP205 Nuclear pore complex protein Nup205 yes yes 2 2.1857E-13 176.6 By MS/MS 1 0 1 1 19787000 0 0 19787000 1990 1714 2074 8463 6962 6962 1 0 0 4263300 DLPSWMK RSLGPPQGEEDSVPRDLPSWMKFLHGKLGN GEEDSVPRDLPSWMKFLHGKLGNPIVPLNI R D L M K F 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 7 0 875.42112 P78527 P78527 2121 2127 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.072332 71.949 By MS/MS 1 0 1 1 3959800 0 0 3959800 1991 1089 2075 8464 6963 6963 1 0 0 853200 DLPVTEAVFSALVTGHAR DIEGASKILGFMKTKDLPVTEAVFSALVTG VTEAVFSALVTGHARAGDMENAENILTVMR K D L A R A 3 1 0 1 0 0 1 1 1 0 2 0 0 1 1 1 2 0 0 3 0 0 18 0 1881.9949 P42704 P42704 227 244 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.00028584 79.545 By MS/MS By MS/MS 2 0 2 1 1 3106900 0 1527900 1579000 1992 808 2076 8465;8466 6964;6965 6965 2 0 688020 356830 DLQDELAGNSEQR QEQIKQRTKLELKAKDLQDELAGNSEQRKR AKDLQDELAGNSEQRKRLLKERQKLLEKIE K D L Q R K 1 1 1 2 0 2 2 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 13 0 1473.6696 Q9UQE7 Q9UQE7 311 323 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 4.4295E-34 212.82 By MS/MS 2 0 1 1 16676000 0 0 16676000 1993 2222 2077 8467 6966 6966 1 0 0 3768400 DLQEVIELTK LSGNGENEDLLKLKKDLQEVIELTKDLLST LKLKKDLQEVIELTKDLLSTQPSETLASSD K D L T K D 0 0 0 1 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1186.6445 O75940 O75940 38 47 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 2 0.00020094 120.99 By MS/MS 6 0 1 1 14503000 0 0 14503000 1994 292 2078 8468 6967 6967 1 0 0 2169800 DLQGLTVEHAIDSFR EEEFGQRRQDLYSARDLQGLTVEHAIDSFR DLQGLTVEHAIDSFREGETMILTLKDKGVL R D L F R E 1 1 0 2 0 1 1 1 1 1 2 0 0 1 0 1 1 0 0 1 0 0 15 0 1699.8529 O43290 O43290 253 267 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2;3 6.4203E-30 141.34 By MS/MS 1.67 0.471 1 2 3 12220000 0 0 12220000 1995 193 2079 8469;8470;8471 6968;6969 6969 2 0 0 2736300 DLQGRDEQSEEK RLEVNLQAMKAQFERDLQGRDEQSEEKKKQ FERDLQGRDEQSEEKKKQLVRQVREMEAEL R D L E K K 0 1 0 2 0 2 3 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 12 1 1432.643 P35579 P35579 1572 1583 MYH9 Myosin-9 yes yes 3 0.059564 46.481 By MS/MS 3 0.816 1 1 1 3 8022800 0 8022800 0 1996 752 2080 8472;8473;8474 6970 6970 1 0 3588900 0 DLQLQILR SSQFVSKGDLQTMLRDLQLQILRNVTHHVS DLQTMLRDLQLQILRNVTHHVSVTKQLPTS R D L L R N 0 1 0 1 0 2 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 997.59203 O94901 O94901 580 587 SUN1 SUN domain-containing protein 1 yes yes 2 0.0015557 114.19 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 8580000 0 5565200 3014800 1997 303 2081 8475;8476;8477;8478 6971;6972 6972 1 0 2543800 492410 DLQNVNITLR CRSRPRNVPVITGSKDLQNVNITLRILFRP ITGSKDLQNVNITLRILFRPVASQLPRIFT K D L L R I 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1184.6513 P35232 P35232 84 93 PHB Prohibitin yes yes 2 0.00062245 130.66 By matching By MS/MS 6.33 0.471 2 1 1 2 26693000 0 6079800 20613000 1998 740 2082 8479;8480;8481 6973 6973 1 0 2104600 3128100 DLQPFPTCQALVYR NVDPEDLIPKLPRPRDLQPFPTCQALVYRG RDLQPFPTCQALVYRGHSDLVRCLSVSPGG R D L Y R G 1 1 0 1 1 2 0 0 0 0 2 0 0 1 2 0 1 0 1 1 0 0 14 0 1706.845 Q14137 Q14137 397 410 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.0076697 84.507 By MS/MS 2.5 0.5 1 1 2 13222000 0 0 13222000 1999 1283 2083 8482;8483 6974;6975 6974 2 0 0 2706200 DLREVFSK CCLGVFGLSLYTTERDLREVFSKYGPIADV SLYTTERDLREVFSKYGPIADVSIVYDQQS R D L S K Y 0 1 0 1 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 8 1 992.5291 P62995 P62995 133 140 TRA2B Transformer-2 protein homolog beta yes yes 2 4.6957E-08 168.26 By MS/MS 5.5 0.5 1 1 2 18664000 0 18664000 0 2000 1055 2084 8484;8485 6976 6976 1 0 6278800 0 DLRPSALPFVASLIR FEQALTGAFMSAVIKDLRPSALPFVASLIR DLRPSALPFVASLIRHYTMVAVAQQCGPFL K D L I R H 2 2 0 1 0 0 0 0 0 1 3 0 0 1 2 2 0 0 0 1 0 0 15 1 1653.9566 Q9Y4A5 Q9Y4A5 1033 1047 TRRAP Transformation/transcription domain-associated protein yes yes 3 0.011625 59.634 By MS/MS 1.5 0.5 1 1 2 2150900 0 0 2150900 2001 2285 2085 8486;8487 6977 6977 1 0 0 467810 DLSAAGIGLLAAATQSLSMPASLGR FQQSSLSRDSQGHGRDLSAAGIGLLAAATQ AAATQSLSMPASLGRMNQGTARLASLMNLG R D L G R M 6 1 0 1 0 1 0 3 0 1 5 0 1 0 1 4 1 0 0 0 0 0 25 0 2370.2577 P43243 P43243 20 44 MATR3 Matrin-3 yes yes 2;3 0 432.37 By MS/MS By MS/MS 2.28 0.87 3 9 4 2 6 12 392300000 0 42075000 350230000 2002 812 2086;2087 8488;8489;8490;8491;8492;8493;8494;8495;8496;8497;8498;8499;8500;8501;8502;8503;8504;8505 6978;6979;6980;6981;6982;6983;6984;6985;6986;6987;6988;6989;6990;6991;6992;6993;6994;6995;6996 6984 396 19 0 18903000 77773000 DLSEELEALKTELEDTLDTTAAQQELR ESEKASRNKAEKQKRDLSEELEALKTELED LEDTLDTTAAQQELRTKREQEVAELKKALE R D L L R T 3 1 0 3 0 2 6 0 0 0 6 1 0 0 0 1 4 0 0 0 0 0 27 1 3060.4986 P35580 P35580 1143 1169 MYH10 Myosin-10 yes yes 3 0.0015077 41.188 By MS/MS 1.5 0.5 1 1 2 4734000 0 0 4734000 2003 753 2088 8506;8507 6997 6997 1 0 0 1062800 DLSELGSVR RAQFEQLKDGKTTVKDLSELGSVRTLLQGS GKTTVKDLSELGSVRTLLQGSGCLAGIYLE K D L V R T 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 2 0 0 0 1 0 0 9 0 974.50327 Q15149 Q15149 3477 3485 PLEC Plectin yes yes 2 0.00069791 130.27 By MS/MS By matching 1.5 0.5 1 1 1 1 17728000 0 16088000 1640000 2004 1348 2089 8508;8509 6998 6998 1 0 7863500 370600 DLSFFGGLLR WSPSPAQASGAAALRDLSFFGGLLRRAACL AAALRDLSFFGGLLRRAACLRRCLGPPAAH R D L L R R 0 1 0 1 0 0 0 2 0 0 3 0 0 2 0 1 0 0 0 0 0 0 10 0 1123.6026 Q32P28 Q32P28 106 115 LEPRE1 Prolyl 3-hydroxylase 1 yes yes 2 2.99E-05 151.27 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 5042600 0 576730 4465800 2005 1409 2090 8510;8511 6999;7000 7000 2 0 259710 866160 DLSHIGDAVVISCAK CVVKMPSGEFARICRDLSHIGDAVVISCAK DLSHIGDAVVISCAKDGVKFSASGELGNGN R D L A K D 2 0 0 2 1 0 0 1 1 2 1 1 0 0 0 2 0 0 0 2 0 0 15 0 1583.7977 P12004 P12004 150 164 PCNA Proliferating cell nuclear antigen yes yes 2 2.2372E-07 167.84 By MS/MS 6 0 1 1 15706000 0 0 15706000 2006 531 2091 8512 7001 7001 1 0 0 2349800 DLSILSYLSQLQPPMPK RITPRNRESHNKILRDLSILSYLSQLQPPM SILSYLSQLQPPMPKPLSPLHSLTPYQVPF R D L P K P 0 0 0 1 0 2 0 0 0 1 4 1 1 0 3 3 0 0 1 0 0 0 17 0 1929.0281 Q5SY16 Q5SY16 521 537 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2;3 0.0032422 82.171 By MS/MS By MS/MS 2.43 0.728 1 2 4 2 5 25339000 0 1163000 24176000 2007 1446 2092;2093 8513;8514;8515;8516;8517;8518;8519 7002;7003;7004;7005;7006;7007 7007 634 6 0 509570 4729200 DLSLEEIQK KESVPEFPLSPPKKKDLSLEEIQKKLEAAE SPPKKKDLSLEEIQKKLEAAEERRKSHEAE K D L Q K K 0 0 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1073.5605 P16949;Q93045 P16949 44 52 STMN1;STMN2 Stathmin;Stathmin-2 yes no 2 0.016553 84.498 By MS/MS By matching By MS/MS 8 0 3 1 1 1 5316200 0 756020 4560100 2008 580 2094 8520;8521;8522 7008;7009 7009 2 0 343960 699110 DLSLLQIQMR RNALKWDKDNLQILRDLSLLQIQMRDLEGY LQILRDLSLLQIQMRDLEGYRETRYQLLQL R D L M R D 0 1 0 1 0 2 0 0 0 1 3 0 1 0 0 1 0 0 0 0 0 0 10 0 1215.6645 Q9BXJ9;Q6N069 Q9BXJ9 119 128 NAA15;NAA16 N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit yes no 2 4.9463E-20 141.52 By MS/MS 2 0 1 1 0 0 0 0 2009 1928 2095 8523 7010 7010 1 0 0 0 DLSMIVLLPNEIDGLQK EDVQAKVLEIPYKGKDLSMIVLLPNEIDGL SMIVLLPNEIDGLQKLEEKLTAEKLMEWTS K D L Q K L 0 0 1 2 0 1 1 1 0 2 4 1 1 0 1 1 0 0 0 1 0 0 17 0 1897.0231 P29508;P48594 P29508 240 256 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 0.0029609 81.92 By MS/MS 4.5 0.5 1 1 2 1420900 1420900 0 0 2010 700 2096 8524;8525 7011 7011 1 1123000 0 0 DLSSVQTLLTK IGEKENSLKTDDYGRDLSSVQTLLTKQETF DYGRDLSSVQTLLTKQETFDAGLQAFQQEG R D L T K Q 0 0 0 1 0 1 0 0 0 0 3 1 0 0 0 2 2 0 0 1 0 0 11 0 1203.6711 Q13813 Q13813 2007 2017 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 5.7846E-07 154.56 By MS/MS By MS/MS By MS/MS 1.71 0.7 3 3 1 2 2 3 92261000 3432400 47611000 41217000 2011 1268 2097 8526;8527;8528;8529;8530;8531;8532 7012;7013;7014;7015;7016 7013 5 3598100 22795000 8919200 DLSYCLSGMYDHR GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG GRDLSYCLSGMYDHRYGDSEFTVQSTTGHC R D L H R Y 0 1 0 2 1 0 0 1 1 0 2 0 1 0 0 2 0 0 2 0 0 0 13 0 1615.6759 P52597 P52597 263 275 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 0.00046596 121.61 By MS/MS 5 0 1 1 18850000 0 0 18850000 2012 910 2098 8533 7017 7017 1 0 0 2629200 DLTDYLMK YALPHAILRLDLAGRDLTDYLMKILTERGY RLDLAGRDLTDYLMKILTERGYSFTTTAER R D L M K I 0 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 0 1 0 0 0 8 0 997.47903 P60709;P63261;P68032;P63267;P68133;P62736;Q562R1 P60709 184 191 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 1;2 0.016198 104.75 By MS/MS By MS/MS By MS/MS 5.91 2.87 5 2 1 5 6 5 3 2 5 6 15 13 3310900000 24042000 1624500000 1662400000 2013 966;1069;1075;1430 2099;2100 8534;8535;8536;8537;8538;8539;8540;8541;8542;8543;8544;8545;8546;8547;8548;8549;8550;8551;8552;8553;8554;8555;8556;8557;8558;8559;8560;8561;8562;8563;8564;8565;8566;8567 7018;7019;7020;7021;7022;7023;7024;7025;7026;7027;7028;7029;7030;7031;7032;7033 7026 14 25536000 454290000 305710000 DLTEYLK KFASHCLMNHPDLAKDLTEYLKVRSHDPEE MNHPDLAKDLTEYLKVRSHDPEEAIRHDVI K D L L K V 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 7 0 880.4542 Q9NTI5;Q29RF7 Q9NTI5 350 356 PDS5B;PDS5A Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A no no 2 0.058572 75.269 By MS/MS 2 0.816 1 1 1 3 19992000 0 0 19992000 2014 2053;1405 2101 8568;8569;8570 7034 7034 1 0 0 4350800 DLTEYLSR GKMFIGGLSWDTSKKDLTEYLSRFGEVVDC SWDTSKKDLTEYLSRFGEVVDCTIKTDPVT K D L S R F 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 8 0 995.49238 O14979 O14979 163 170 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 0.00018411 140.98 By MS/MS By MS/MS By MS/MS 4.54 1.82 1 1 2 2 2 3 2 1 7 5 266280000 9886600 103520000 152880000 2015 157 2102 8571;8572;8573;8574;8575;8576;8577;8578;8579;8580;8581;8582;8583 7035;7036;7037;7038;7039;7040;7041;7042;7043 7042 9 13164000 35713000 22325000 DLTGQVPTPVVK LKHLDFLKQPLATQKDLTGQVPTPVVKQTK TQKDLTGQVPTPVVKQTKLKQRADSRESLK K D L V K Q 0 0 0 1 0 1 0 1 0 0 1 1 0 0 2 0 2 0 0 3 0 0 12 0 1252.7027 P46821 P46821 520 531 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00039027 128.03 By MS/MS 1.5 0.5 1 1 2 7257700 0 7257700 0 2016 834 2103 8584;8585 7044 7044 1 0 3429000 0 DLTGVQNLR IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL SEDYGRDLTGVQNLRKKHKRLEAELAAHEP R D L L R K 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1014.5458 Q13813 Q13813 1795 1803 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 8.8402E-05 143.85 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 95800000 10590000 30235000 54974000 2017 1268 2104 8586;8587;8588;8589 7045;7046 7045 2 10590000 14779000 11990000 DLTLEENQVK EFEERMEEESQSQGRDLTLEENQVKKYHRL QSQGRDLTLEENQVKKYHRLKEEASKRAAT R D L V K K 0 0 1 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1187.6034 Q14683 Q14683 364 373 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 2.0626E-05 110.41 By MS/MS 2 0 1 1 0 0 0 0 2018 1312 2105 8590 7047 7047 1 0 0 0 DLTLEENQVKK EFEERMEEESQSQGRDLTLEENQVKKYHRL SQGRDLTLEENQVKKYHRLKEEASKRAATL R D L K K Y 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 11 1 1315.6983 Q14683 Q14683 364 374 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00047318 134.26 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 33348000 0 7541800 25806000 2019 1312 2106 8591;8592;8593;8594 7048;7049;7050 7048 3 0 3396200 5471500 DLTNSHFFLFDFQK FLRAVTKLGFKIVSKDLTNSHFFLFDFQKT KDLTNSHFFLFDFQKTGPPLVGPKAQLSGL K D L Q K T 0 0 1 2 0 1 0 0 1 0 2 1 0 4 0 1 1 0 0 0 0 0 14 0 1757.8413 O43159 O43159 418 431 RRP8 Ribosomal RNA-processing protein 8 yes yes 3 0.0051658 70.373 By MS/MS 3.5 0.5 1 1 2 12714000 0 0 12714000 2020 188 2107 8595;8596 7051 7051 1 0 0 2144600 DLTNVQNLQK LYEVEGHLASDDYGKDLTNVQNLQKKHALL DDYGKDLTNVQNLQKKHALLEADVAAHQDR K D L Q K K 0 0 2 1 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1171.6197 Q13813 Q13813 709 718 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 5.3298E-05 149.65 By MS/MS 1 0 1 1 18365000 0 18365000 0 2021 1268 2108 8597 7052 7052 1 0 8976500 0 DLTQMADELRR PKYYADGEDAYAMKRDLTQMADELRRHLEL AMKRDLTQMADELRRHLELKEKGRHVVLGA R D L R R H 1 2 0 2 0 1 1 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 11 1 1346.6612 P41227 P41227 150 160 NAA10 N-alpha-acetyltransferase 10 yes yes 3 0.0045504 80.763 By matching By MS/MS 6.33 0.471 2 1 1 2 4345000 0 804490 3540500 2022 794 2109 8598;8599;8600 7053 7053 1 0 278490 563890 DLTSVMR IREKEKILSSDDYGKDLTSVMRLLSKHRAF LSSDDYGKDLTSVMRLLSKHRAFEDEMSGR K D L M R L 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 7 0 820.41129 Q01082 Q01082 669 675 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.041539 81.864 By MS/MS 1 0 1 1 3876100 0 3876100 0 2023 1128 2110 8601 7054 7054 1 0 1894600 0 DLTSVNILLK LHGLESQIQSDDYGKDLTSVNILLKKQQML DDYGKDLTSVNILLKKQQMLENQMEVRKKE K D L L K K 0 0 1 1 0 0 0 0 0 1 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1114.6598 Q01082;O15020 Q01082 1411 1420 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 0.025474 79.906 By matching By MS/MS By MS/MS 1 0 3 1 1 1 26908000 566810 12600000 13742000 2024 1128;160 2111 8602;8603;8604 7055;7056 7056 2 566810 6158500 2960800 DLTSWVTEMK LNDSYRLQRFLADFRDLTSWVTEMKALINA LADFRDLTSWVTEMKALINADELASDVAGA R D L M K A 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 2 1 0 1 0 0 10 0 1208.5747 Q13813 Q13813 372 381 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 3.739E-06 153.08 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 49326000 0 21718000 27608000 2025 1268 2112 8605;8606;8607;8608 7057;7058;7059 7057 3 0 10616000 5975400 DLTTAGAVTQCYR YDSRSGTHNMYREYRDLTTAGAVTQCYRDM YRDLTTAGAVTQCYRDMGARHRARAHSIQI R D L Y R D 2 1 0 1 1 1 0 1 0 0 1 0 0 0 0 0 3 0 1 1 0 0 13 0 1454.6824 Q02543 Q02543 99 111 RPL18A 60S ribosomal protein L18a yes yes 2 4.825E-17 187.97 By MS/MS By MS/MS By MS/MS 6.5 0.764 1 1 4 1 1 4 125080000 5050200 9087500 110940000 2026 1147 2113 8609;8610;8611;8612;8613;8614 7060;7061;7062;7063;7064 7061 5 10884000 5218100 18986000 DLVASVPDMQGDGEDNHMDGDK LKQCIELEQQFDFLKDLVASVPDMQGDGED DMQGDGEDNHMDGDKGARRGRKPGSGGRKN K D L D K G 1 0 1 6 0 1 1 3 1 0 1 1 2 0 1 1 0 0 0 2 0 0 22 0 2343.9584 Q14919 Q14919 85 106 DRAP1 Dr1-associated corepressor yes yes 3 2.438E-20 139.02 By MS/MS 7 0 1 1 10540000 0 0 10540000 2027 1323 2114 8615 7065 7065 1 0 0 1870300 DLVAWSR QMHSNAPRSEIATERDLVAWSRRVVVPELS RSEIATERDLVAWSRRVVVPELSAGVASRQ R D L S R R 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 7 0 845.43955 Q8WWQ0 Q8WWQ0 715 721 PHIP PH-interacting protein yes yes 2 0.0086919 122.79 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 3 1 8652300 721560 3199400 4731300 2028 1690 2115 8616;8617;8618;8619;8620 7066;7067 7067 2 721560 1501000 1019400 DLVGMGHHFLPSEPTK RQGQRDLELPDMHMRDLVGMGHHFLPSEPT LVGMGHHFLPSEPTKWNVEDVYEFIRSLPG R D L T K W 0 0 0 1 0 0 1 2 2 0 2 1 1 1 2 1 1 0 0 1 0 0 16 0 1763.8665 Q8IXK0 Q8IXK0 778 793 PHC2 Polyhomeotic-like protein 2 yes yes 3 0.060133 32.191 By matching By MS/MS 5 0.816 1 1 1 1 2 14245000 0 2032900 12212000 2029 1582 2116 8621;8622;8623 7068 7068 1 0 674650 1736900 DLVLGPSGVLQGIRPGK CDITFACVSDPKAAKDLVLGPSGVLQGIRP VLGPSGVLQGIRPGKCYVDMSTVDADTVTE K D L G K C 0 1 0 1 0 1 0 4 0 1 3 1 0 0 2 1 0 0 0 2 0 0 17 1 1704.9887 Q49A26 Q49A26 339 355 GLYR1 Putative oxidoreductase GLYR1 yes yes 2;3 2.0147E-06 149.41 By MS/MS By MS/MS 4 0.943 3 4 1 1 3 6 74767000 0 15738000 59029000 2030 1417 2117 8624;8625;8626;8627;8628;8629;8630;8631;8632 7069;7070;7071;7072;7073;7074;7075;7076 7071 8 0 5378500 10343000 DLVLPTQALPASPALK GAQDSEAAFAKLDQKDLVLPTQALPASPAL LVLPTQALPASPALKNKRPRKDENESSAPA K D L L K N 3 0 0 1 0 1 0 0 0 0 4 1 0 0 3 1 1 0 0 1 0 0 16 0 1632.9451 Q15554 Q15554 354 369 TERF2 Telomeric repeat-binding factor 2 yes yes 2 0.0021396 89.301 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 15949000 0 5223600 10726000 2031 1374 2118 8633;8634;8635 7077;7078 7078 2 0 1877500 2080200 DLVSSLTSGLLTIGDR VSGAHNTIICARAGKDLVSSLTSGLLTIGD LVSSLTSGLLTIGDRFGGALDAAAKMFSKA K D L D R F 0 1 0 2 0 0 0 2 0 1 4 0 0 0 0 3 2 0 0 1 0 0 16 0 1645.8887 P53396 P53396 919 934 ACLY ATP-citrate synthase yes yes 2 0.0014378 93.011 By MS/MS 2 0 1 1 478410 0 478410 0 2032 919 2119 8636 7079 7079 1 0 215440 0 DLWSLLSFLK RRWVLTGTPIQNSLKDLWSLLSFLKLKPFI QNSLKDLWSLLSFLKLKPFIDREWWHRTIQ K D L L K L 0 0 0 1 0 0 0 0 0 0 4 1 0 1 0 2 0 1 0 0 0 0 10 0 1220.6805 Q14527 Q14527 595 604 HLTF Helicase-like transcription factor yes yes 2 0.041899 74.92 By MS/MS 2.5 0.5 1 1 2 1485700 0 0 1485700 2033 1303 2120 8637;8638 7080 7080 1 0 0 328920 DLYANTVLSGGTTMYPGIADR TTFNSIMKCDVDIRKDLYANTVLSGGTTMY VLSGGTTMYPGIADRMQKEITALAPSTMKI K D L D R M 2 1 1 2 0 0 0 3 0 1 2 0 1 0 1 1 3 0 2 1 0 0 21 0 2214.0627 P60709;P63261 P60709 292 312 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 2.3724E-239 319.28 By MS/MS By MS/MS By MS/MS 5.09 2.43 5 5 5 6 12 7 8 2 3 3 4 31 21 2269000000 42453000 913370000 1313200000 2034 966;1069 2121;2122 8639;8640;8641;8642;8643;8644;8645;8646;8647;8648;8649;8650;8651;8652;8653;8654;8655;8656;8657;8658;8659;8660;8661;8662;8663;8664;8665;8666;8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678;8679;8680;8681;8682;8683;8684;8685;8686;8687;8688;8689;8690;8691;8692;8693;8694 7081;7082;7083;7084;7085;7086;7087;7088;7089;7090;7091;7092;7093;7094;7095;7096;7097;7098;7099;7100;7101;7102;7103;7104;7105;7106;7107;7108;7109;7110;7111;7112;7113;7114;7115;7116;7117;7118;7119;7120;7121;7122;7123;7124;7125;7126;7127;7128;7129;7130;7131;7132;7133;7134;7135;7136;7137;7138;7139;7140;7141;7142 7103 463 62 34018000 293880000 196940000 DLYDDKDGLR RAMQDRYMEVSGNLRDLYDDKDGLRKEELN SGNLRDLYDDKDGLRKEELNAISGPNEFAE R D L L R K 0 1 0 4 0 0 0 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 1 1208.5673 Q12874 Q12874 59 68 SF3A3 Splicing factor 3A subunit 3 yes yes 3 0.010534 73.885 By MS/MS 4 0 1 1 4238000 0 0 4238000 2035 1206 2123 8695 7143 7143 1 0 0 692200 DLYEDELVPLFEK QPGIGTEVFVGKIPRDLYEDELVPLFEKAG PRDLYEDELVPLFEKAGPIWDLRLMMDPLS R D L E K A 0 0 0 2 0 0 3 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1608.7923 O43390 O43390 175 187 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.00027829 134.3 By MS/MS By MS/MS 3 1.67 1 1 2 1 1 4 51351000 4343400 0 47007000 2036 195 2124 8696;8697;8698;8699;8700 7144;7145;7146;7147 7147 4 5011300 0 9204500 DLYIRPNIAQK DSLVINLNRSNPKLKDLYIRPNIAQKRMQG PKLKDLYIRPNIAQKRMQGSLEAHVNGFRF K D L Q K R 1 1 1 1 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 0 11 1 1329.7405 Q9Y5B9 Q9Y5B9 664 674 SUPT16H FACT complex subunit SPT16 yes yes 2;3 0.002539 130.66 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 64843000 0 8378000 56465000 2037 2296 2125 8701;8702;8703;8704;8705 7148;7149;7150;7151 7151 4 0 3772700 12356000 DLYLIPLSAQDPVPSK RGRFGVVANNNRHVKDLYLIPLSAQDPVPS LYLIPLSAQDPVPSKLLPFEGPGLESPRPN K D L S K L 1 0 0 2 0 1 0 0 0 1 3 1 0 0 3 2 0 0 1 1 0 0 16 0 1754.9455 Q9BTC0 Q9BTC0 1158 1173 DIDO1 Death-inducer obliterator 1 yes yes 2 0.016552 66.498 By MS/MS 1 0 1 1 2486500 0 2486500 0 2038 1900 2126 8706 7152 7152 1 0 1215400 0 DMAQLPETEIAPAK KDKALPLEAEVAPVKDMAQLPETEIAPAKD KDMAQLPETEIAPAKDVAPSTVKEVGLLKD K D M A K D 3 0 0 1 0 1 2 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 14 0 1512.7494 P27816 P27816 477 490 MAP4 Microtubule-associated protein 4 yes yes 2 0.022022 73.435 By MS/MS 2 0 1 1 15420000 0 0 15420000 2039 683 2127 8707 7153 7153 1 0 0 3484700 DMAQSIYRPSK DEIYNVYDQAWRGGKDMAQSIYRPSKNLDK RGGKDMAQSIYRPSKNLDKDMYGDDLEARI K D M S K N 1 1 0 1 0 1 0 0 0 1 0 1 1 0 1 2 0 0 1 0 0 0 11 1 1294.634 Q13573 Q13573 442 452 SNW1 SNW domain-containing protein 1 yes yes 2;3 0.029621 103.31 By MS/MS By MS/MS 3.6 0.8 3 1 1 4 1 25325000 0 16604000 8720600 2040 1259 2128 8708;8709;8710;8711;8712 7154;7155;7156 7156 3 0 6595800 1691400 DMDDEESWIK RAKLNESHRLHQFFRDMDDEESWIKEKKLL HQFFRDMDDEESWIKEKKLLVGSEDYGRDL R D M I K E 0 0 0 3 0 0 2 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 10 0 1266.5074 Q13813 Q13813 1772 1781 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0073522 92.838 By MS/MS 1.5 0.5 1 1 2 9191700 0 0 9191700 2041 1268 2129 8713;8714 7157 7157 1 0 0 2005200 DMDEPSPVPNVEEVTLPK SKRGHREEEQEDLTKDMDEPSPVPNVEEVT EPSPVPNVEEVTLPKTVNTKKDSESAPVKG K D M P K T 0 0 1 2 0 0 3 0 0 0 1 1 1 0 4 1 1 0 0 3 0 0 18 0 1994.9507 Q8TAQ2 Q8TAQ2 342 359 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 2 0.0060742 68.034 By MS/MS 1.5 0.5 1 1 2 22984000 0 0 22984000 2042 1653 2130 8715;8716 7158;7159 7158 2 0 0 5062500 DMEANLLPGFLR DQTVYIVLDKAEYLRDMEANLLPGFLRLQE YLRDMEANLLPGFLRLQELADRNVTVLFLS R D M L R L 1 1 1 1 0 0 1 1 0 0 3 0 1 1 1 0 0 0 0 0 0 0 12 0 1374.6966 O43913 O43913 132 143 ORC5 Origin recognition complex subunit 5 yes yes 2 6.3246E-08 166.33 By MS/MS 4.5 0.5 1 1 2 5798000 0 0 5798000 2043 218 2131 8717;8718 7160;7161 7161 2 0 0 869830 DMEDPTPVPNIEEVVLPK RRSQKEEDEQEDLTKDMEDPTPVPNIEEVV DPTPVPNIEEVVLPKNVNLKKDSENTPVKG K D M P K N 0 0 1 2 0 0 3 0 0 1 1 1 1 0 4 0 1 0 0 3 0 0 18 0 2021.0027 Q92922 Q92922 370 387 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 0.051408 50.563 By MS/MS 2 0 1 1 4477700 0 0 4477700 2044 1731 2132 8719 7162 7162 1 0 0 1011900 DMFQETMEAMR FLSNGHVTIPGQQDKDMFQETMEAMRIMGI QQDKDMFQETMEAMRIMGIPEEEQMGLLRV K D M M R I 1 1 0 1 0 1 2 0 0 0 0 0 3 1 0 0 1 0 0 0 0 0 11 0 1387.557 P35579 P35579 317 327 MYH9 Myosin-9 yes yes 2 2.8302E-07 159.37 By MS/MS 1 0 1 1 9984800 0 9984800 0 2045 752 2133 8720 7163 7163 1 0 4880400 0 DMGEMVTQGQTDAQYMFLR KNEIDNYEEDYQKMRDMGEMVTQGQTDAQY MVTQGQTDAQYMFLRQRLQALDTGWNELHK R D M L R Q 1 1 0 2 0 3 1 2 0 0 1 0 3 1 0 0 2 0 1 1 0 0 19 0 2219.965 Q01082 Q01082 1123 1141 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 8.9591E-137 281.25 By MS/MS By MS/MS 1 0 4 2 2 24203000 0 5959000 18244000 2046 1128 2134 8721;8722;8723;8724 7164;7165;7166;7167 7166 4 0 2912700 3930900 DMGYGNWISKPQEEK RDYETAKNYFKKGLKDMGYGNWISKPQEEK DMGYGNWISKPQEEKNFYLCPV________ K D M E K N 0 0 1 1 0 1 2 2 0 1 0 2 1 0 1 1 0 1 1 0 0 0 15 1 1780.809 P55265 P55265 1205 1219 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2;3 0.0020485 149.23 By MS/MS 2 0 2 2 25309000 0 0 25309000 2047 941 2135 8725;8726 7168;7169 7168 2 0 0 5719300 DMIILPEMVGSMVGVYNGK APPMEKPEVVKTHLRDMIILPEMVGSMVGV LPEMVGSMVGVYNGKTFNQVEIKPEMIGHY R D M G K T 0 0 1 1 0 0 1 3 0 2 1 1 3 0 1 1 0 0 1 3 0 0 19 0 2052.0094 P62841 P62841 82 100 RPS15 40S ribosomal protein S15 yes yes 2;3 6.7244E-09 126.1 By MS/MS By MS/MS By MS/MS 7.21 0.558 1 9 4 1 7 6 25804000 391440 4161400 21251000 2048 1037 2136;2137;2138 8727;8728;8729;8730;8731;8732;8733;8734;8735;8736;8737;8738;8739;8740 7170;7171;7172;7173;7174;7175;7176;7177;7178;7179;7180 7173 495;496;497 11 336070 2198400 3477800 DMLANFR QNDSQAIAEVLNQLKDMLANFRGSEKYCYL AEVLNQLKDMLANFRGSEKYCYLQNEVFGL K D M F R G 1 1 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 7 0 865.41162 P15924 P15924 728 734 DSP Desmoplakin yes yes 2 0.012694 115.83 By MS/MS By MS/MS By MS/MS 4.55 2.81 3 1 1 1 2 1 1 1 8 1 2 62695000 36736000 8290300 17669000 2049 572 2139 8741;8742;8743;8744;8745;8746;8747;8748;8749;8750;8751 7181;7182;7183;7184;7185;7186;7187;7188 7188 8 36969000 4052200 3636300 DMLLANKVPAAAR NVGFVFTKEDLTEIRDMLLANKVPAAARAG IRDMLLANKVPAAARAGAIAPCEVTVPAQN R D M A R A 4 1 1 1 0 0 0 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 13 1 1368.7548 P05388;Q8NHW5 P05388 100 112 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 3 0.011355 68.83 By MS/MS 6 0 1 1 20201000 0 20201000 0 2050 432 2140 8752 7189 7189 1 0 6993000 0 DMLQAASHYR IEWAEVVINVNNILKDMLQAASHYRQNRNS NNILKDMLQAASHYRQNRNSLYRREESLEK K D M Y R Q 2 1 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 10 0 1190.5502 Q8WUM0 Q8WUM0 734 743 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.00274 98.033 By matching By MS/MS 2 0 2 1 1 11031000 4120900 0 6909600 2051 1675 2141 8753;8754 7190 7190 0 4965200 0 1561400 DMNHTNSYGIIR ADYMTAKNNVVINYKDMNHTNSYGIIRGLQ NYKDMNHTNSYGIIRGLQFASFIVQYYGLV K D M I R G 0 1 2 1 0 0 0 1 1 2 0 0 1 0 0 1 1 0 1 0 0 0 12 0 1419.6565 Q6P2Q9 Q6P2Q9 1021 1032 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 7.843E-08 164.33 By matching By MS/MS By MS/MS 1.17 0.373 5 1 1 2 3 70461000 1687800 23222000 45552000 2052 1490 2142 8755;8756;8757;8758;8759;8760 7191;7192;7193;7194 7191 4 1687800 11350000 9833200 DMPIQAFLLYQEPVLGPVR KVLPVPQKAVPYPQRDMPIQAFLLYQEPVL QAFLLYQEPVLGPVRGPFPIIV________ R D M V R G 1 1 0 1 0 2 1 1 0 1 3 0 1 1 3 0 0 0 1 2 0 0 19 0 2185.1605 CON__P02666 CON__P02666 184 202 yes yes 2;3 8.4957E-09 146.47 By MS/MS By matching By MS/MS 5.46 2.8 4 2 3 4 2 4 5 20 2 2 39730000 36607000 716860 2406300 + 2053 41 2143;2144 8761;8762;8763;8764;8765;8766;8767;8768;8769;8770;8771;8772;8773;8774;8775;8776;8777;8778;8779;8780;8781;8782;8783;8784 7195;7196;7197;7198;7199;7200;7201;7202;7203;7204;7205;7206;7207;7208;7209;7210;7211;7212;7213;7214 7199 16 20 27287000 263500 592290 DMSPLSETEMALGK KDVAPSTVKEVGLLKDMSPLSETEMALGKD KDMSPLSETEMALGKDVTPPPETEVVLIKN K D M G K D 1 0 0 1 0 0 2 1 0 0 2 1 2 0 1 2 1 0 0 0 0 0 14 0 1507.6898 P27816 P27816 505 518 MAP4 Microtubule-associated protein 4 yes yes 2 0.065349 61.344 By MS/MS 1.5 0.5 1 1 2 23616000 0 0 23616000 2054 683 2145 8785;8786 7215 7215 1 0 0 5206400 DMSTWVFGAER IDWTDDSRCFVVGSKDMSTWVFGAERWDNL VGSKDMSTWVFGAERWDNLIYYALGGHKDA K D M E R W 1 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 1 1 0 1 0 0 11 0 1297.5761 Q15269 Q15269 165 175 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 0.068973 69.276 By MS/MS 2 0 1 1 984560 0 984560 0 2055 1352 2146 8787 7216 7216 1 0 443360 0 DMTLPPETNVILTK EKVALSSETEVALARDMTLPPETNVILTKD RDMTLPPETNVILTKDKALPLEAEVAPVKD R D M T K D 0 0 1 1 0 0 1 0 0 1 2 1 1 0 2 0 3 0 0 1 0 0 14 0 1570.8276 P27816 P27816 449 462 MAP4 Microtubule-associated protein 4 yes yes 2 0.031883 68.536 By MS/MS 2 0 1 1 4581000 0 4581000 0 2056 683 2147 8788 7217 7217 1 0 2062900 0 DMTVPILVSKPPVFTGK PSPKVEIMPPPPKPKDMTVPILVSKPPVFT TVPILVSKPPVFTGKDKTEPIKGFQKAMVK K D M G K D 0 0 0 1 0 0 0 1 0 1 1 2 1 1 3 1 2 0 0 3 0 0 17 1 1828.0168 P11182 P11182 234 250 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 2;3 0.00045571 95.273 By MS/MS 4.5 0.5 2 2 4 23008000 0 0 23008000 2057 519 2148 8789;8790;8791;8792 7218;7219;7220;7221 7220 4 0 0 3442500 DMVGIAQTGSGK TPIQCQGFPLALSGRDMVGIAQTGSGKTLA SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ R D M G K T 1 0 0 1 0 1 0 3 0 1 0 1 1 0 0 1 1 0 0 1 0 0 12 0 1162.5652 Q92841 Q92841 210 221 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 9.8515E-09 173.32 By matching By MS/MS By MS/MS 3.43 0.495 4 3 1 3 3 145370000 11895000 67351000 66128000 2058 1725 2149;2150 8793;8794;8795;8796;8797;8798;8799 7222;7223;7224;7225 7223 660 4 13724000 27627000 12664000 DMVVNLFHELEK EQEIIQNDRQLQYERDMVVNLFHELEKMTE YERDMVVNLFHELEKMTEVLDHEERVISNL R D M E K M 0 0 1 1 0 0 2 0 1 0 2 1 1 1 0 0 0 0 0 2 0 0 12 0 1472.7334 Q9UBB9 Q9UBB9 347 358 TFIP11 Tuftelin-interacting protein 11 yes yes 2;3 0.011089 92.606 By MS/MS 2.33 0.471 2 1 3 9430000 0 0 9430000 2059 2129 2151 8800;8801;8802 7226;7227 7226 2 0 0 2098100 DMYEQFQNIMK EALIEKLKHGQFTLRDMYEQFQNIMKMGPF FTLRDMYEQFQNIMKMGPFSQILGMIPGFG R D M M K M 0 0 1 1 0 2 1 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 11 0 1445.6319 P61011 P61011 331 341 SRP54 Signal recognition particle 54 kDa protein yes yes 2 2.2538E-05 106.6 By MS/MS 4 0 1 1 0 0 0 0 2060 974 2152 8803 7228 7228 1 0 0 0 DMYSFLQDMGLK INGIMYFPVSNTNEKDMYSFLQDMGLKAFT NEKDMYSFLQDMGLKAFTNSKIHKPKICPQ K D M L K A 0 0 0 2 0 1 0 1 0 0 2 1 2 1 0 1 0 0 1 0 0 0 12 0 1446.6523 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 667 678 yes yes 2 0.0062204 100.48 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 12160000 0 380040 11780000 + 2061 28 2153 8804;8805 7229;7230 7230 2 0 171140 2284700 DNALTLLIK LLDLLTEVGVSGQGRDNALTLLIKAVPRKS VSGQGRDNALTLLIKAVPRKSLKDPNNSLT R D N I K A 1 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 1 0 0 0 0 0 9 0 999.59645 Q9H3U1 Q9H3U1 313 321 UNC45A Protein unc-45 homolog A yes yes 2 0.029874 77.318 By MS/MS By matching 2.5 0.5 1 1 1 1 3528000 0 2720100 807920 2062 1980 2154 8806;8807 7231 7231 1 0 1224900 156700 DNCANELDLLAQK MTRHRPECITFQQIKDNCANELDLLAQKYS IKDNCANELDLLAQKYSIEQLTTYWLQPGD K D N Q K Y 2 0 2 2 1 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 13 0 1502.7035 P03243;P03244 P03243 139 151 yes no 2 0.00031728 129.16 By MS/MS 3 1.41 1 1 1 1 1 5 60752000 0 0 60752000 2063 406 2155 8808;8809;8810;8811;8812 7232;7233;7234 7232 3 0 0 11399000 DNEEETTDDPR CLEHYEFLLDKAAQRDNEEETTDDPRKLKP AAQRDNEEETTDDPRKLKPGEIDPNPETKP R D N P R K 0 1 1 3 0 0 3 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 11 0 1319.5113 Q99459 Q99459 111 121 CDC5L Cell division cycle 5-like protein yes yes 2 0.053687 72.928 By MS/MS 2 0 1 1 716350 0 716350 0 2064 1843 2156 8813 7235 7235 1 0 322580 0 DNGDGTYTVSYLPDMSGR QILDPEGKPKKANIRDNGDGTYTVSYLPDM DGTYTVSYLPDMSGRYTITIKYGGDEIPYS R D N G R Y 0 1 1 3 0 0 0 3 0 0 1 0 1 0 1 2 2 0 2 1 0 0 18 0 1946.8316 Q14315 Q14315 1592 1609 FLNC Filamin-C yes yes 2 0.0011722 87.498 By MS/MS 1 0 1 1 2601300 0 2601300 0 2065 1298 2157 8814 7236 7236 1 0 1271500 0 DNHLLGTFDLTGIPPAPR TVTIKVYEGERPLTKDNHLLGTFDLTGIPP LLGTFDLTGIPPAPRGVPQIEVTFEIDVNG K D N P R G 1 1 1 2 0 0 0 2 1 1 3 0 0 1 3 0 2 0 0 0 0 0 18 0 1933.0058 P11021 P11021 475 492 HSPA5 78 kDa glucose-regulated protein yes yes 3 3.778E-09 137.73 By matching By MS/MS By MS/MS 3.17 0.373 5 1 1 3 2 36161000 5143500 10435000 20583000 2066 516 2158 8815;8816;8817;8818;8819;8820 7237;7238;7239;7240;7241;7242;7243;7244 7237 8 5934500 4340400 3992100 DNIQAMVIVPTR GAYLIPLLERLDLKKDNIQAMVIVPTRELA LKKDNIQAMVIVPTRELALQVSQICIQVSK K D N T R E 1 1 1 1 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 12 0 1355.7231 P26196 P26196 163 174 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.0014058 113.63 By MS/MS By MS/MS 4 0 2 1 1 11262000 0 4538900 6723000 2067 665 2159 8821;8822 7245;7246 7245 2 0 1506300 1098100 DNIQGITK GLGKGGAKRHRKVLRDNIQGITKPAIRRLA RHRKVLRDNIQGITKPAIRRLARRGGVKRI R D N T K P 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 887.47125 P62805 P62805 25 32 HIST1H4A Histone H4 yes yes 2 0.00072608 125.81 By MS/MS By MS/MS By MS/MS 8.5 1 2 1 4 1 1 2 5 634780000 25783000 209880000 399110000 2068 1033 2160 8823;8824;8825;8826;8827;8828;8829;8830 7247;7248;7249;7250;7251;7252;7253 7249 7 14472000 167790000 120490000 DNIQGITKPAIR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA VLRDNIQGITKPAIRRLARRGGVKRISGLI R D N I R R 1 1 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 12 1 1324.7463 P62805 P62805 25 36 HIST1H4A Histone H4 yes yes 2;3 2.7701E-84 225.66 By matching By MS/MS By MS/MS 6.59 3.03 6 4 4 5 4 7 8 17 9 4 27 33 36615000000 128030000 13098000000 23389000000 2069 1033 2161 8831;8832;8833;8834;8835;8836;8837;8838;8839;8840;8841;8842;8843;8844;8845;8846;8847;8848;8849;8850;8851;8852;8853;8854;8855;8856;8857;8858;8859;8860;8861;8862;8863;8864;8865;8866;8867;8868;8869;8870;8871;8872;8873;8874;8875;8876;8877;8878;8879;8880;8881;8882;8883;8884;8885;8886;8887;8888;8889;8890;8891;8892;8893;8894 7254;7255;7256;7257;7258;7259;7260;7261;7262;7263;7264;7265;7266;7267;7268;7269;7270;7271;7272;7273;7274;7275;7276;7277;7278;7279;7280;7281;7282;7283;7284;7285;7286;7287;7288;7289;7290;7291;7292;7293;7294;7295;7296;7297;7298;7299;7300;7301;7302;7303;7304;7305;7306;7307;7308;7309;7310;7311;7312;7313;7314;7315;7316;7317;7318;7319;7320;7321;7322;7323;7324;7325;7326;7327;7328;7329;7330;7331;7332;7333;7334;7335;7336;7337;7338;7339;7340;7341;7342;7343;7344;7345;7346;7347 7285 93 113640000 22572000000 11597000000 DNIQGITKPAIRR GLGKGGAKRHRKVLRDNIQGITKPAIRRLA LRDNIQGITKPAIRRLARRGGVKRISGLIY R D N R R L 1 2 1 1 0 1 0 1 0 3 0 1 0 0 1 0 1 0 0 0 0 0 13 2 1480.8474 P62805 P62805 25 37 HIST1H4A Histone H4 yes yes 2;3 8.3324E-05 162.36 By MS/MS By MS/MS 8.91 0.9 1 2 5 3 5 6 389950000 0 138680000 251260000 2070 1033 2162 8895;8896;8897;8898;8899;8900;8901;8902;8903;8904;8905 7348;7349;7350;7351;7352;7353;7354;7355 7350 8 0 378030000 93966000 DNLAEDIMR VDQLTNDKARVEVERDNLAEDIMRLREKLQ RVEVERDNLAEDIMRLREKLQEEMLQREEA R D N M R L 1 1 1 2 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1075.4968 P08670 P08670 176 184 VIM Vimentin yes yes 1;2 9.608E-31 196.79 By MS/MS By MS/MS By MS/MS 3.6 1.71 3 3 3 5 3 2 1 1 5 14 1558000000 19134000 82566000 1456300000 2071 476 2163;2164 8906;8907;8908;8909;8910;8911;8912;8913;8914;8915;8916;8917;8918;8919;8920;8921;8922;8923;8924;8925 7356;7357;7358;7359;7360;7361;7362;7363;7364;7365;7366;7367;7368;7369;7370;7371;7372 7365 184 17 14928000 27953000 232930000 DNLAQQSFNMEQANYTIQSLKDTK ALRVLKQKRMYEQQRDNLAQQSFNMEQANY MEQANYTIQSLKDTKTTVDAMKLGVKEMKK R D N T K T 2 0 3 2 0 4 1 0 0 1 2 2 1 1 0 2 2 0 1 0 0 0 24 1 2786.3181 Q9NZZ3 Q9NZZ3 80 103 CHMP5 Charged multivesicular body protein 5 yes yes 3 0.04223 28.023 By matching By MS/MS 5.5 0.5 1 1 1 1 7165300 3211000 3954200 0 2072 2108 2165 8926;8927 7373 7373 1 2572500 1368800 0 DNLPIQIQK MCKDKPTETLLNTVKDNLPIQIQKLTEEKY LLNTVKDNLPIQIQKLTEEKYQVEQCVNEA K D N Q K L 0 0 1 1 0 2 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 0 1067.5975 Q96SI9 Q96SI9 123 131 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.0096521 89.046 By MS/MS 3 0 1 1 2525000 0 2525000 0 2073 1834 2166 8928 7374 7374 1 0 1076400 0 DNNGVIGLLEPMK ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS FRDNNGVIGLLEPMKKSMVPVQVQLDVPVV R D N M K K 0 0 2 1 0 0 1 2 0 1 2 1 1 0 1 0 0 0 0 1 0 0 13 0 1398.7177 P18754 P18754 148 160 RCC1 Regulator of chromosome condensation yes yes 2 0.012267 85.813 By MS/MS 5 0 1 1 7471900 0 7471900 0 2074 599 2167 8929 7375 7375 1 0 1926000 0 DNNGVIGLLEPMKK ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK R D N K K S 0 0 2 1 0 0 1 2 0 1 2 2 1 0 1 0 0 0 0 1 0 0 14 1 1526.8127 P18754 P18754 148 161 RCC1 Regulator of chromosome condensation yes yes 2;3 0.012726 77.597 By MS/MS By MS/MS 5 1.2 1 1 3 1 1 2 5 59079000 0 27267000 31812000 2075 599 2168 8930;8931;8932;8933;8934;8935;8936 7376;7377;7378 7378 3 0 7028700 4753100 DNNLLGR GVLIQVYEGERAMTKDNNLLGRFELSGIPP EGERAMTKDNNLLGRFELSGIPPAPRGVPQ K D N G R F 0 1 2 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 800.41407 P0DMV9;P0DMV8;P17066 P0DMV9 452 458 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 0.0084748 123.1 By MS/MS By MS/MS 3 0 2 1 1 30118000 0 14657000 15461000 2076 501;582 2169 8937;8938 7379;7380 7379 2 0 6248400 2998600 DNNQFASASLDR EGHTHYVMQIVINPKDNNQFASASLDRTIK NPKDNNQFASASLDRTIKVWQLGSSSPNFT K D N D R T 2 1 2 2 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 12 0 1336.6008 P35606 P35606 154 165 COPB2 Coatomer subunit beta yes yes 2 0.067409 68.536 By MS/MS 1.5 0.5 1 1 2 2906600 0 2906600 0 2077 754 2170 8939;8940 7381 7381 1 0 1354300 0 DNPQTHYYAVAVVK PNNLKPVVAEFHGTKDNPQTHYYAVAVVKK KDNPQTHYYAVAVVKKDTDFKLNELRGKKS K D N V K K 2 0 1 1 0 1 0 0 1 0 0 1 0 0 1 0 1 0 2 3 0 0 14 0 1603.7995 CON__Q29443;CON__Q0IIK2 CON__Q29443 88 101 yes no 2;3 1.9963E-11 179.67 By MS/MS By matching 3.25 0.433 3 1 2 2 51148000 24837000 26311000 0 + 2078 74 2171 8941;8942;8943;8944 7382;7383 7383 2 28656000 10617000 0 DNQLSEVANK VVPSDLYPLVLGFLRDNQLSEVANKFAKAT LGFLRDNQLSEVANKFAKATGATQQDANAS R D N N K F 1 0 2 1 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 10 0 1116.5411 Q14978 Q14978 24 33 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 2 0.037486 76.064 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 8148000 0 0 8148000 2079 1326 2172 8945;8946 7384;7385 7385 2 0 0 1580300 DNQVVQLHPSTVLDHKPEWVLYNEFVLTTK QVAHLERTGHYLTVKDNQVVQLHPSTVLDH KPEWVLYNEFVLTTKNYIRTCTDIKPEWLV K D N T K N 0 0 2 2 0 2 2 0 2 0 4 2 0 1 2 1 3 1 1 5 0 0 30 1 3548.8304 O43143 O43143 715 744 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 4 0.0035681 34.166 By MS/MS 3 0 1 1 11892000 0 0 11892000 2080 186 2173 8947 7386 7386 1 0 0 2306600 DNTIEHLLPLFLAQLK ALASVIMGLSPILGKDNTIEHLLPLFLAQL NTIEHLLPLFLAQLKDECPEVRLNIISNLD K D N L K D 1 0 1 1 0 1 1 0 1 1 5 1 0 1 1 0 1 0 0 0 0 0 16 0 1864.0458 P30153 P30153 359 374 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 3 0.0010757 78.508 By MS/MS 3.5 0.5 1 1 2 3417700 0 0 3417700 2081 712 2174 8948;8949 7387;7388 7388 2 0 0 589150 DNTINLIHTFR ITFVLFPRHTNASARDNTINLIHTFRDYLH ASARDNTINLIHTFRDYLHYHIKCSKAYIH R D N F R D 0 1 2 1 0 0 0 0 1 2 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1342.6993 O15144 O15144 238 248 ARPC2 Actin-related protein 2/3 complex subunit 2 yes yes 2;3 0.00089616 115.42 By matching By MS/MS By MS/MS 5.83 0.373 1 5 1 3 2 35155000 1338500 14718000 19099000 2082 169 2175 8950;8951;8952;8953;8954;8955 7389;7390;7391 7390 3 1782200 4797800 2857400 DNTQLLINQLWQLPTER CAGPTPEAELQALARDNTQLLINQLWQLPT TQLLINQLWQLPTERVEEAIVARLPEPTTR R D N E R V 0 1 2 1 0 3 1 0 0 1 4 0 0 0 1 0 2 1 0 0 0 0 17 0 2081.0906 Q15050 Q15050 67 83 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 9.2672E-48 218.5 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 5882600 798690 5083900 0 2083 1337 2176 8956;8957;8958 7392;7393 7393 2 639850 1347400 0 DNTRPGANSPEMWSEAIK RLGKSHIRTDDVHAKDNTRPGANSPEMWSE RPGANSPEMWSEAIKILKGEYAVRAIKEHK K D N I K I 2 1 2 1 0 0 2 1 0 1 0 1 1 0 2 2 1 1 0 0 0 0 18 1 2001.9214 Q92499 Q92499 473 490 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2;3 2.628E-16 184.01 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 31095000 0 7840700 23254000 2084 1705 2177 8959;8960;8961;8962 7394;7395;7396 7396 3 0 3430400 4510100 DNVSSPGGATIHALHVLESGGFR AKMLLHSEQHPGQLKDNVSSPGGATIHALH ATIHALHVLESGGFRSLLINAVEASCIRTR K D N F R S 2 1 1 1 0 0 1 4 2 1 2 0 0 1 1 3 1 0 0 2 0 0 23 0 2320.156 P32322 P32322 229 251 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes yes 4 8.923E-05 69.152 By matching By MS/MS 6 0 2 1 1 3893200 0 454770 3438400 2085 728 2178 8963;8964 7397 7397 1 0 157430 514430 DNYVPEVSALDQEIIEVDPDTK RGISIKLQEEERERRDNYVPEVSALDQEII SALDQEIIEVDPDTKEMLKLLDFGSLSNLQ R D N T K E 1 0 1 4 0 1 3 0 0 2 1 1 0 0 2 1 1 0 1 3 0 0 22 0 2488.1857 P08708 P08708 82 103 RPS17 40S ribosomal protein S17 yes yes 2 5.9749E-19 126.63 By MS/MS 8 0 1 1 9727300 0 0 9727300 2086 477 2179 8965 7398;7399 7399 2 0 0 1491300 DPAITSILEK TAIWTARKIVSDYQRDPAITSILEKMDIFL SDYQRDPAITSILEKMDIFLLPVANPDGYV R D P E K M 1 0 0 1 0 0 1 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 10 0 1085.5968 Q9UI42 Q9UI42 205 214 CPA4 Carboxypeptidase A4 yes yes 2 0.0028979 104.05 By MS/MS By matching 3.67 3.77 2 1 2 1 8539400 7461800 0 1077600 2087 2162 2180 8966;8967;8968 7400;7401 7401 2 6073100 0 232190 DPALNSGVSQKPDPAK TTGAKKRAAPKGTKRDPALNSGVSQKPDPA PALNSGVSQKPDPAKTKNRRKRKPSTSDDS R D P A K T 2 0 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 16 1 1622.8264 P11388 P11388 1444 1459 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.3755E-45 217.46 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 62941000 0 12550000 50391000 2088 524 2181 8969;8970;8971;8972;8973 7402;7403;7404;7405;7406 7406 5 0 5948600 10857000 DPAQPMSPGEATQSGAR ______________________________ AQPMSPGEATQSGARPADRYGLLKHSREFL R D P A R P 3 1 0 1 0 2 1 2 0 0 0 0 1 0 3 2 1 0 0 0 0 0 17 0 1698.7631 Q9BQG0 Q9BQG0 5 21 MYBBP1A Myb-binding protein 1A yes yes 2 9.0534E-06 134.56 By MS/MS 2 0 1 1 3638100 0 3638100 0 2089 1885 2182 8974 7407 7407 1 0 1638300 0 DPAQPMSPGEATQSGARPADR ______________________________ SPGEATQSGARPADRYGLLKHSREFLDFFW R D P D R Y 4 2 0 2 0 2 1 2 0 0 0 0 1 0 4 2 1 0 0 0 0 0 21 1 2137.9811 Q9BQG0 Q9BQG0 5 25 MYBBP1A Myb-binding protein 1A yes yes 3 9.8632E-15 151.57 By MS/MS By matching 1.6 0.49 2 3 4 1 21756000 0 19635000 2120800 2090 1885 2183;2184 8975;8976;8977;8978;8979 7408;7409;7410 7409 674 3 0 9051200 479260 DPDAQPGGELMLGGTDSK QKLVDQNIFSFYLSRDPDAQPGGELMLGGT AQPGGELMLGGTDSKYYKGSLSYLNVTRKA R D P S K Y 1 0 0 3 0 1 1 4 0 0 2 1 1 0 2 1 1 0 0 0 0 0 18 0 1786.8043 P07339 P07339 236 253 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2 1.2884E-12 172.57 By MS/MS By MS/MS 5.86 2.53 1 1 1 2 1 1 6 1 39428000 30094000 0 9333200 2091 458 2185 8980;8981;8982;8983;8984;8985;8986 7411;7412;7413 7412 3 25262000 0 1656100 DPEAGDVEADPGLADLPQQLLFVHQGETELK GADHQITQWDLAVERDPEAGDVEADPGLAD PQQLLFVHQGETELKELHWHPQCPGLLVST R D P L K E 3 0 0 4 0 3 4 3 1 0 5 1 0 1 3 0 1 0 0 2 0 0 31 0 3330.6256 Q9BQ67 Q9BQ67 388 418 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 3 9.7389E-57 174.49 By MS/MS 4 0 1 1 45425000 0 0 45425000 2092 1878 2186 8987 7414 7414 1 0 0 7419300 DPEDRIPSPLGYAAIPIK ______________________________ DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R D P I K F 2 1 0 2 0 0 1 1 0 3 1 1 0 0 4 1 0 0 1 0 0 0 18 1 1951.0415 Q9Y3A4 Q9Y3A4 12 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 3 0.047693 35.212 By matching By MS/MS 6 0 2 1 1 5954800 0 2636800 3318000 2093 2262 2187 8988;8989 7415 7415 1 0 912780 496400 DPEEIEKEEQAAAEK REHPWEVMPDLYFYRDPEEIEKEEQAAAEK DPEEIEKEEQAAAEKAVTKEEFQGEWTAPA R D P E K A 3 0 0 1 0 1 6 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 15 1 1714.7897 P08865 P08865 206 220 RPSA 40S ribosomal protein SA yes yes 2 5.5908E-24 196.15 By MS/MS 5.5 0.5 1 1 2 7791200 0 0 7791200 2094 480 2188 8990;8991 7416 7416 1 0 0 1132800 DPELWGSVLLESNPYR NSLFKSLSRYLVRRKDPELWGSVLLESNPY PELWGSVLLESNPYRRPLIDQVVQTALSET K D P Y R R 0 1 1 1 0 0 2 1 0 0 3 0 0 0 2 2 0 1 1 1 0 0 16 0 1873.921 Q00610 Q00610 952 967 CLTC Clathrin heavy chain 1 yes yes 2 4.0175E-06 160.15 By MS/MS 1.5 0.5 1 1 2 2716900 0 0 2716900 2095 1125 2189 8992;8993 7417 7417 1 0 0 589990 DPENFPFVVLGNK LDSWRDEFLIQASPRDPENFPFVVLGNKID PRDPENFPFVVLGNKIDLENRQVATKRAQA R D P N K I 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 0 2 0 0 13 0 1474.7456 P51149 P51149 114 126 RAB7A Ras-related protein Rab-7a yes yes 2 0.00033019 140.45 By MS/MS 7 0 1 1 10987000 0 0 10987000 2096 890 2190 8994 7418;7419 7418 2 0 0 1949600 DPESNINSDNEK EHLLGAGFVSSRNPKDPESNINSDNEKIIK NPKDPESNINSDNEKIIKAVICAGLYPKVA K D P E K I 0 0 3 2 0 0 2 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 12 0 1360.5743 Q9H2U1 Q9H2U1 818 829 DHX36 ATP-dependent RNA helicase DHX36 yes yes 2 0.014882 88.134 By MS/MS 2 0 1 1 1513900 0 1513900 0 2097 1976 2191 8995 7420 7420 1 0 681750 0 DPETGLYLLPLSSTQSPLVDSATQQAFQNLLLSVK HENLTYLQLLERCVRDPETGLYLLPLSSTQ SATQQAFQNLLLSVKYGRFQGQRVSAWELI R D P V K Y 2 0 1 2 0 4 1 1 0 0 8 1 0 1 3 5 3 0 1 2 0 0 35 0 3772.9775 P58107 P58107 788 822 EPPK1 Epiplakin yes yes 4 0.067133 13.441 By MS/MS 1 0 1 1 772270 0 0 772270 2098 958 2192 8996 7421 7421 1 0 0 166400 DPFAHLPK MDECEQALAAEPKAKDPFAHLPKSTFVLDE AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE K D P P K S 1 0 0 1 0 0 0 0 1 0 1 1 0 1 2 0 0 0 0 0 0 0 8 0 923.4865 P26641 P26641 278 285 EEF1G Elongation factor 1-gamma yes yes 2 0.011278 92.187 By MS/MS 5 0 1 1 12531000 0 0 12531000 2099 674 2193 8997 7422 7422 1 0 0 1747800 DPGEARPDITHQSLLMLMDSPLNR LNCDKHKSILLKNGRDPGEARPDITHQSLL THQSLLMLMDSPLNRAGLLQVYIHTQKNVL R D P N R A 1 2 1 3 0 1 1 1 1 1 4 0 2 0 3 2 1 0 0 0 0 0 24 1 2705.3265 Q92979 Q92979 79 102 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 3;4 1.5399E-07 80.702 By MS/MS 7 0 2 2 34182000 0 0 34182000 2100 1736 2194 8998;8999 7423;7424 7423 2 0 0 6065400 DPGMGAMGGMGGGMGGGMF TTAEVVVTEIPKEEKDPGMGAMGGMGGGMG GAMGGMGGGMGGGMF_______________ K D P M F - 1 0 0 1 0 0 0 10 0 0 0 0 5 1 1 0 0 0 0 0 0 0 19 0 1673.6129 P10809 P10809 555 573 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 3.272E-06 108.35 By MS/MS By matching 4 0 2 1 1 5623000 3205300 0 2417700 2101 515 2195 9000;9001 7425 7425 1 2500700 0 394880 DPIPYLPPLEK TQFLPPNLLALFAPRDPIPYLPPLEKLPHE FAPRDPIPYLPPLEKLPHEKHHNQPYCGIA R D P E K L 0 0 0 1 0 0 1 0 0 1 2 1 0 0 4 0 0 0 1 0 0 0 11 0 1280.7016 P08621 P08621 17 27 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.048084 74.267 By matching By MS/MS 1.75 0.829 2 1 1 1 3 32350000 357980 0 31992000 2102 474 2196 9002;9003;9004;9005 7426 7426 1 357980 0 6361700 DPIVMGVTVEAGQVK PCKIKILPQYIFNSRDPIVMGVTVEAGQVK DPIVMGVTVEAGQVKQGTPMCVPSKNFVDI R D P V K Q 1 0 0 1 0 1 1 2 0 1 0 1 1 0 1 0 1 0 0 4 0 0 15 0 1541.8123 O60841 O60841 1106 1120 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.0039051 85.845 By MS/MS By MS/MS 2.57 1.4 2 2 1 1 1 5 2 21329000 0 13388000 7941200 2103 236 2197 9006;9007;9008;9009;9010;9011;9012 7427;7428;7429;7430 7428 4 0 5282600 1711100 DPNDVRPIQAR SLKNVDENIRKLTGRDPNDVRPIQARLLAL LTGRDPNDVRPIQARLLALSGPGGGRGRGS R D P A R L 1 2 1 2 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 11 1 1279.6633 Q9H307 Q9H307 33 43 PNN Pinin yes yes 3 0.0010364 102.53 By MS/MS 2.5 0.5 1 1 2 10260000 0 0 10260000 2104 1978 2198 9013;9014 7431 7431 1 0 0 2125600 DPNLFPFEK LQLESPKLHAEAIKRDPNLFPFEKEGPHYT AEAIKRDPNLFPFEKEGPHYTPPIPNYQPP R D P E K E 0 0 1 1 0 0 1 0 0 0 1 1 0 2 2 0 0 0 0 0 0 0 9 0 1105.5444 Q9NQ50 Q9NQ50 165 173 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 2 0.014068 86.136 By MS/MS By MS/MS 7 0 2 1 1 7655900 0 1376600 6279300 2105 2031 2199 9015;9016 7432;7433;7434 7433 3 0 790450 1114200 DPNTYFIVGTAMVYPEEAEPK QNEYALSLVSCKLGKDPNTYFIVGTAMVYP IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ K D P P K Q 2 0 1 1 0 0 3 1 0 1 0 1 1 1 3 0 2 0 2 2 0 0 21 0 2370.109 Q16531 Q16531 824 844 DDB1 DNA damage-binding protein 1 yes yes 2 1.7444E-06 98.676 By MS/MS 1.5 0.5 1 1 2 7868700 0 0 7868700 2106 1387 2200 9017;9018 7435 7435 1 0 0 1755500 DPPIYSVGAFENFR QSRERGDHSHLFDSKDPPIYSVGAFENFRH KDPPIYSVGAFENFRHQLEDLRQLDNFKHP K D P F R H 1 1 1 1 0 0 1 1 0 1 0 0 0 2 2 1 0 0 1 1 0 0 14 0 1610.7729 Q8IXT5 Q8IXT5 515 528 RBM12B RNA-binding protein 12B yes yes 2 6.1155E-58 232.14 By MS/MS By MS/MS 2 0 2 1 1 11680000 0 3735300 7944300 2107 1587 2201 9019;9020 7436;7437 7437 2 0 1682100 1795300 DPPLAAVTTAVQELLR ILEDFSKRQQPKFKKDPPLAAVTTAVQELL PPLAAVTTAVQELLRLAQAHPAGPPTLDPV K D P L R L 3 1 0 1 0 1 1 0 0 0 3 0 0 0 2 0 2 0 0 2 0 0 16 0 1692.941 Q15477 Q15477 955 970 SKIV2L Helicase SKI2W yes yes 2 0.00012101 101.53 By MS/MS 1.5 0.5 1 1 2 2191800 0 0 2191800 2108 1371 2202 9021;9022 7438 7438 1 0 0 493070 DPQALSEHLKNPVIAQK MSDPAMRLILEQMQKDPQALSEHLKNPVIA QALSEHLKNPVIAQKIQKLMDVGLIAIR__ K D P Q K I 2 0 1 1 0 2 1 0 1 1 2 2 0 0 2 1 0 0 0 1 0 0 17 1 1887.0214 P31948 P31948 514 530 STIP1 Stress-induced-phosphoprotein 1 yes yes 3 0.013791 51.888 By MS/MS 3.5 0.5 1 1 2 8479100 0 8479100 0 2109 726 2203 9023;9024 7439 7439 1 0 3115700 0 DPTAEQFQEELEK EHMFRQLRFESTMKRDPTAEQFQEELEKFQ KRDPTAEQFQEELEKFQQAIDSREDPVSCA R D P E K F 1 0 0 1 0 2 4 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 13 0 1562.71 P31944 P31944 55 67 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 3.8549E-72 241.92 By MS/MS By matching 5.11 3 1 1 1 2 1 1 1 1 7 2 69241000 64935000 0 4306400 2110 723 2204 9025;9026;9027;9028;9029;9030;9031;9032;9033 7440;7441;7442;7443;7444;7445;7446;7447 7445 7 52008000 0 2600200 DPTPSFYDLWAQEDPNAVLGR VHAIKMGWIQPRRPRDPTPSFYDLWAQEDP YDLWAQEDPNAVLGRHKMHVPAPKLALPGH R D P G R H 2 1 1 3 0 1 1 1 0 0 2 0 0 1 3 1 1 1 1 1 0 0 21 0 2390.1179 Q14137 Q14137 275 295 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 1.5266E-70 229.48 By MS/MS 2 0 1 1 5186400 0 0 5186400 2111 1283 2205 9034 7448 7448 1 0 0 1172000 DPVVVPFPTMTFAEVLATYGTDKPDTR SLIEGLLQYSWPNDKDPVVVPFPTMTFAEV AEVLATYGTDKPDTRFGMKIIDISDVFRNT K D P T R F 2 1 0 3 0 0 1 1 0 0 1 1 1 2 4 0 5 0 1 4 0 0 27 1 2966.4736 Q6PI48 Q6PI48 310 336 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 3 6.2972E-05 53.55 By MS/MS 3 0 1 1 2131500 0 0 2131500 2112 1495 2206 9035 7449 7449 1 0 0 413410 DPYSGSTISLFQAMQK HEQLLSAEKAVTGYRDPYSGSTISLFQAMQ PYSGSTISLFQAMQKGLVLRQHGIRLLEAQ R D P Q K G 1 0 0 1 0 2 0 1 0 1 1 1 1 1 1 3 1 0 1 0 0 0 16 0 1771.8451 Q15149 Q15149 3575 3590 PLEC Plectin yes yes 2 1.7817E-12 176.8 By MS/MS 1 0 2 2 14585000 0 14585000 0 2113 1348 2207;2208 9036;9037 7450;7451 7451 604 2 0 7129100 0 DPYTEQTISLFQAMK HDRLLSAERAVTGYRDPYTEQTISLFQAMK DPYTEQTISLFQAMKKELIPTEEALRLLDA R D P M K K 1 0 0 1 0 2 1 0 0 1 1 1 1 1 1 1 2 0 1 0 0 0 15 0 1770.8498 Q15149 Q15149 3910 3924 PLEC Plectin yes yes 2 1.9828E-17 189.13 By MS/MS 1 0 1 1 4121700 0 4121700 0 2114 1348 2209 9038 7452 7452 1 0 2014600 0 DPYTGQQISLFQAMQK HHKLLSAERAVTGYKDPYTGQQISLFQAMQ PYTGQQISLFQAMQKGLIVREHGIRLLEAQ K D P Q K G 1 0 0 1 0 4 0 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 16 0 1853.8982 Q15149 Q15149 2916 2931 PLEC Plectin yes yes 2 1.0592E-12 180.24 By MS/MS 1 0 1 1 5743500 0 5743500 0 2115 1348 2210 9039 7453 7453 1 0 2807300 0 DPYTGQSVSLFQALK HEKLLSAEKAVTGYRDPYTGQSVSLFQALK DPYTGQSVSLFQALKKGLIPREQGLRLLDA R D P L K K 1 0 0 1 0 2 0 1 0 0 2 1 0 1 1 2 1 0 1 1 0 0 15 0 1652.841 Q15149 Q15149 3244 3258 PLEC Plectin yes yes 2 2.0974E-58 231.92 By MS/MS 1 0 1 1 14101000 0 14101000 0 2116 1348 2211 9040 7454 7454 1 0 6892200 0 DPYTGQSVSLFQALKK HEKLLSAEKAVTGYRDPYTGQSVSLFQALK PYTGQSVSLFQALKKGLIPREQGLRLLDAQ R D P K K G 1 0 0 1 0 2 0 1 0 0 2 2 0 1 1 2 1 0 1 1 0 0 16 1 1780.9359 Q15149 Q15149 3244 3259 PLEC Plectin yes yes 2;3 1.9603E-05 102.65 By MS/MS By MS/MS 1 0 3 1 2 22470000 0 10429000 12040000 2117 1348 2212 9041;9042;9043 7455;7456;7457 7456 2 0 5097700 2594300 DQAEEEPNRIPSR KEEDVVTPKPGKRKRDQAEEEPNRIPSRSL KRDQAEEEPNRIPSRSLRRTKLNQESTAPK R D Q S R S 1 2 1 1 0 1 3 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 13 1 1539.7277 Q14676 Q14676 1867 1879 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 0.00029558 111.12 By MS/MS 4 2.16 1 1 1 3 11171000 0 0 11171000 2118 1310 2213 9044;9045;9046 7458;7459 7458 2 0 0 1980600 DQAVENILVSPVVVASSLGLVSLGGK RSAGLAFSLYQAMAKDQAVENILVSPVVVA VVVASSLGLVSLGGKATTASQAKAVLSAEQ K D Q G K A 2 0 1 1 0 1 1 3 0 1 4 1 0 0 1 4 0 0 0 6 0 0 26 0 2550.4269 P50454 P50454 61 86 SERPINH1 Serpin H1 yes yes 3 0.00051458 46.695 By MS/MS 3 0.816 1 1 1 3 3964700 0 0 3964700 2119 879 2214 9047;9048;9049 7460 7460 1 0 0 739780 DQAVMISGESGAGK AVADTVYRALRTERRDQAVMISGESGAGKT RDQAVMISGESGAGKTEATKRLLQFYAETC R D Q G K T 2 0 0 1 0 1 1 3 0 1 0 1 1 0 0 2 0 0 0 1 0 0 14 0 1348.6293 O00159 O00159 133 146 MYO1C Unconventional myosin-Ic yes yes 2 0.00023647 151.13 By MS/MS 2 0 1 1 5905100 0 0 5905100 2120 106 2215 9050 7461 7461 1 0 0 1334400 DQDLTQEIAMEHFVK KTVEDLDGLIQQIYRDQDLTQEIAMEHFVK DQDLTQEIAMEHFVKKVEAAHCAACDLFIP R D Q V K K 1 0 0 2 0 2 2 0 1 1 1 1 1 1 0 0 1 0 0 1 0 0 15 0 1802.8509 Q9ULX6 Q9ULX6 463 477 AKAP8L A-kinase anchor protein 8-like yes yes 3 0.014442 55.186 By MS/MS 2 0 1 1 5062100 0 0 5062100 2121 2195 2216 9051 7462 7462 1 0 0 1143900 DQEALEAVKR NKQAEVKKMDSGYRKDQEALEAVKRLKEKL SGYRKDQEALEAVKRLKEKLEAEMKKLNYE K D Q K R L 2 1 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1157.6041 O95347 O95347 447 456 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.031563 83.647 By MS/MS 2 0 1 1 0 0 0 0 2122 321 2217 9052 7463 7463 1 0 0 0 DQGALDSSEALTPIGSLLAQLPVDVVIGK PPPPASLETAILYLRDQGALDSSEALTPIG GSLLAQLPVDVVIGKMLILGSMFSLVEPVL R D Q G K M 3 0 0 3 0 2 1 3 0 2 5 1 0 0 2 3 1 0 0 3 0 0 29 0 2905.5648 Q14147 Q14147 563 591 DHX34 Probable ATP-dependent RNA helicase DHX34 yes yes 3 0.04227 20.559 By MS/MS 2 0 1 1 809800 0 0 809800 2123 1284 2218 9053 7464 7464 1 0 0 183000 DQGTYEDYVEGLR FEHFLPMLQTVAKNKDQGTYEDYVEGLRVF NKDQGTYEDYVEGLRVFDKEGNGTVMGAEI K D Q L R V 0 1 0 2 0 1 2 2 0 0 1 0 0 0 0 0 1 0 2 1 0 0 13 0 1543.6791 P60660 P60660 82 94 MYL6 Myosin light polypeptide 6 yes yes 2 0.0054391 101.48 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 21867000 0 4474300 17393000 2124 965 2219 9054;9055;9056;9057 7465;7466;7467 7465 2 0 3067600 4261900 DQIVDLTVGNNK QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K D Q N K T 0 0 2 2 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 2 0 0 12 0 1314.6779 P35527;CON__P35527 P35527 213 224 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.2208E-45 218.6 By MS/MS By MS/MS 6.3 2.9 1 1 1 1 1 1 1 1 2 9 1 312290000 308440000 0 3851100 + 2125 750 2220 9058;9059;9060;9061;9062;9063;9064;9065;9066;9067 7468;7469;7470;7471;7472;7473;7474;7475 7471 7 287370000 0 8422800 DQLIYNLLK ______________________________ ______________________________ K D Q L K E 0 0 1 1 0 1 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 9 0 1118.6336 P00338 P00338 6 14 LDHA L-lactate dehydrogenase A chain yes yes 2 0.00071379 113.89 By MS/MS 6 0 1 1 2828300 0 2828300 0 2126 356 2221 9068 7476 7476 1 0 979070 0 DQLLLGPTYATPK KAYLRDFMYVSQDPKDQLLLGPTYATPKVL PKDQLLLGPTYATPKVLEKAGLTMNDIDAF K D Q P K V 1 0 0 1 0 1 0 1 0 0 3 1 0 0 2 0 2 0 1 0 0 0 13 0 1415.766 P55084 P55084 349 361 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 2 3.0773E-07 166.69 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 25962000 0 4993800 20968000 2127 938 2222 9069;9070;9071 7477;7478 7478 2 0 1287300 3111100 DQLQTFSEEHPVLLTEAPLNPR DWNDMERIWQYVYSKDQLQTFSEEHPVLLT EEHPVLLTEAPLNPRKNRERAAEVFFETFN K D Q P R K 1 1 1 1 0 2 3 0 1 0 4 0 0 1 3 1 2 0 0 1 0 0 22 0 2533.2813 P61163 P61163 97 118 ACTR1A Alpha-centractin yes yes 3 0.021702 37.458 By MS/MS 5 0 1 1 3991900 0 0 3991900 2128 982 2223 9072 7479 7479 0 0 0 556800 DQLSVLENGVDIVVGTPGR PKLRELLIIGGVAARDQLSVLENGVDIVVG VLENGVDIVVGTPGRLDDLVSTGKLNLSQV R D Q G R L 0 1 1 2 0 1 1 3 0 1 2 0 0 0 1 1 1 0 0 4 0 0 19 0 1967.0324 Q92499 Q92499 331 349 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2;3 7.8495E-10 87.18 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 5452700 0 778830 4673900 2129 1705 2224 9073;9074;9075;9076 7480;7481;7482 7480 1 0 350720 914120 DQMQQQLNDYEQLLDVK RRMLTDKEREMAEIRDQMQQQLNDYEQLLD MQQQLNDYEQLLDVKLALDMEISAYRKLLE R D Q V K L 0 0 1 3 0 5 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 17 0 2106.9892 P20700 P20700 351 367 LMNB1 Lamin-B1 yes yes 2;3 2.3088E-19 188.09 By MS/MS By MS/MS By MS/MS 3.36 1.23 1 1 8 1 2 1 2 2 10 283980000 4789700 5821200 273370000 2130 619 2225;2226 9077;9078;9079;9080;9081;9082;9083;9084;9085;9086;9087;9088;9089;9090 7483;7484;7485;7486;7487;7488;7489;7490;7491;7492 7486 267 10 5526200 2481600 52487000 DQNILLGTTYR NNVSSYLSKNILAFRDQNILLGTTYRIIAN LAFRDQNILLGTTYRIIANALSSEPACLAE R D Q Y R I 0 1 1 1 0 1 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 11 0 1292.6725 P78527 P78527 3325 3335 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.0821E-09 169.41 By matching By MS/MS 1.33 0.471 2 1 1 2 30402000 3451800 0 26950000 2131 1089 2227 9091;9092;9093 7493;7494 7493 2 3451800 0 5896000 DQNTVETLQR RIQDKHKKLPEELGRDQNTVETLQRMHTTF EELGRDQNTVETLQRMHTTFEHDIQALGTQ R D Q Q R M 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1202.5891 Q01082 Q01082 1835 1844 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 2.627E-11 171.99 By MS/MS By MS/MS 1 0 2 1 1 16447000 0 9515200 6932200 2132 1128 2228 9094;9095 7495;7496 7495 2 0 4650900 1493600 DQPAFTPSGILTPHALGSR SFRRRQKEKRKRMKRDQPAFTPSGILTPHA FTPSGILTPHALGSRNSPGSQVASNPRQAA R D Q S R N 2 1 0 1 0 1 0 2 1 1 2 0 0 1 3 2 2 0 0 0 0 0 19 0 1964.0116 Q9H0D6 Q9H0D6 428 446 XRN2 5-3 exoribonuclease 2 yes yes 3 0.00063793 68.088 By MS/MS By matching 2.5 0.5 1 1 1 1 12206000 0 8773900 3431900 2133 1960 2229 9096;9097 7497 7497 1 0 3951000 665630 DQPIILTSELGK ESVAFPDWFIASSKRDQPIILTSELGKSYN SKRDQPIILTSELGKSYNTAFELNIND___ R D Q G K S 0 0 0 1 0 1 1 1 0 2 2 1 0 0 1 1 1 0 0 0 0 0 12 0 1312.7238 Q9NZH8 Q9NZH8 146 157 IL36G Interleukin-36 gamma yes yes 2 0.0088731 96.113 By MS/MS By matching 7 2.83 1 1 1 1 1 1 2 7 1 27644000 26829000 0 815120 2134 2102 2230 9098;9099;9100;9101;9102;9103;9104;9105 7498;7499;7500 7500 3 28755000 0 1782700 DQSTYISAIR EELWLDGNSLCDTFRDQSTYISAIRERFPK CDTFRDQSTYISAIRERFPKLLRLDGHELP R D Q I R E 1 1 0 1 0 1 0 0 0 2 0 0 0 0 0 2 1 0 1 0 0 0 10 0 1152.5775 Q9UBU9 Q9UBU9 333 342 NXF1 Nuclear RNA export factor 1 yes yes 2 5.5224E-11 169.09 By MS/MS By MS/MS 3 0 2 1 1 22455000 0 6782000 15673000 2135 2136 2231 9106;9107 7501;7502 7502 2 0 2891200 3039700 DQTIVDPFSSK MYIKQVIIQGFRSYRDQTIVDPFSSKHNVI RSYRDQTIVDPFSSKHNVIVGRNGSGKSNF R D Q S K H 0 0 0 2 0 1 0 0 0 1 0 1 0 1 1 2 1 0 0 1 0 0 11 0 1235.6034 Q9UQE7 Q9UQE7 16 26 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0082136 94.692 By matching By MS/MS 3 1.41 1 1 1 1 1 1 4 28287000 1812900 0 26475000 2136 2222 2232 9108;9109;9110;9111;9112 7503 7503 1 1812900 0 5312600 DQTPDENDQVIVK NELQNLTAAEVVVPRDQTPDENDQVIVKII PRDQTPDENDQVIVKIIGHFYASQMAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 1 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1499.7104 Q9NZI8 Q9NZI8 526 538 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 1.0662E-07 171.87 By MS/MS By MS/MS By MS/MS 3.33 1.7 1 2 3 1 1 1 1 2 6 169000000 8270600 23639000 137090000 2137 2104 2233 9113;9114;9115;9116;9117;9118;9119;9120;9121 7504;7505;7506;7507;7508 7507 5 9542500 10165000 25736000 DQTPDENDQVVVK NELQNLSSAEVVVPRDQTPDENDQVVVKIT PRDQTPDENDQVVVKITGHFYACQVAQRKI R D Q V K I 0 0 1 3 0 2 1 0 0 0 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1485.6947 O00425 O00425 526 538 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 2.1542E-11 179.42 By MS/MS By MS/MS 3 0 2 1 1 33086000 0 6219000 26867000 2138 121 2234 9122;9123 7509;7510 7510 2 0 2651200 5211000 DQTPDENEEVIVR NELQNLTSAEVIVPRDQTPDENEEVIVRII PRDQTPDENEEVIVRIIGHFFASQTAQRKI R D Q V R I 0 1 1 2 0 1 3 0 0 1 0 0 0 0 1 0 1 0 0 2 0 0 13 0 1542.7162 Q9Y6M1 Q9Y6M1 548 560 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 2.7101E-18 195.51 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 33021000 0 2559300 30461000 2139 2315 2235 9124;9125;9126 7511;7512;7513 7512 2 0 1091000 5576400 DQTVIQNTDGNNNEAWAK AFRCLVEKGDVAFVKDQTVIQNTDGNNNEA VIQNTDGNNNEAWAKNLKKENFEVLCKDGT K D Q A K N 2 0 4 2 0 2 1 1 0 1 0 1 0 0 0 0 2 1 0 1 0 0 18 0 2016.9137 CON__Q29443;CON__Q0IIK2 CON__Q29443 542 559 yes no 2 5.2587E-41 216.34 By MS/MS By matching 3 0 2 1 1 18654000 13944000 0 4709500 + 2140 74 2236 9127;9128 7514 7514 1 16089000 0 913420 DQVANSAFVER KENQKHIYYITGETKDQVANSAFVERLRKH GETKDQVANSAFVERLRKHGLEVIYMIEPI K D Q E R L 2 1 1 1 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1234.5942 P07900 P07900 500 510 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 6.2597E-09 163.88 By MS/MS By MS/MS By MS/MS 4.75 3.03 3 1 1 1 2 44525000 14303000 3953500 26269000 2141 466 2237 9129;9130;9131;9132 7515;7516;7517;7518 7517 4 16502000 1685400 5094900 DQVLAMLEK EKMAKATGKLKPTSKDQVLAMLEKAKVNMP LKPTSKDQVLAMLEKAKVNMPAKPAPPTKA K D Q E K A 1 0 0 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1045.5478 Q14008 Q14008 1067 1075 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.02712 78.113 By MS/MS 1 0 1 1 12854000 0 12854000 0 2142 1279 2238 9133 7519 7519 1 0 6282900 0 DQVTYQQLR AVDKDNKFFFDPSARDQVTYQQLRERCVCD FDPSARDQVTYQQLRERCVCDSETGLLLLP R D Q L R E 0 1 0 1 0 3 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 9 0 1149.5778 P58107 P58107 1410 1418 EPPK1 Epiplakin yes yes 2 0.0028089 102.41 By MS/MS 1 0 1 1 11260000 0 11260000 0 2143 958 2239 9134 7520 7520 1 0 5503800 0 DQWYNVLEFSR FYQYLEQSKYRVMNKDQWYNVLEFSRTVHA VMNKDQWYNVLEFSRTVHADLSNYDEDGAW K D Q S R T 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 11 0 1455.6783 Q9BTE7 Q9BTE7 195 205 DCUN1D5 DCN1-like protein 5 yes yes 2 0.034415 77.533 By MS/MS 7 0 1 1 1571100 0 0 1571100 2144 1901 2240 9135 7521 7521 1 0 0 278790 DQYEQMAEK AAPGVDLSRILNEMRDQYEQMAEKNRRDAE ILNEMRDQYEQMAEKNRRDAETWFLSKTEE R D Q E K N 1 0 0 1 0 2 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 9 0 1140.4757 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P08779 291 299 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.0024613 103.87 By MS/MS By MS/MS 5.2 2.75 1 1 1 1 2 1 1 1 1 9 1 86006000 77991000 0 8015200 + 2145 53 2241 9136;9137;9138;9139;9140;9141;9142;9143;9144;9145 7522;7523;7524;7525;7526;7527 7524 6 70177000 0 1118000 DQYVSPETVTVR CQKPEISNGKLSVEKDQYVSPETVTVRCDP VEKDQYVSPETVTVRCDPGYRMVGSQDILC K D Q V R C 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 2 0 1 3 0 0 12 0 1392.6885 CON__ENSEMBL:ENSBTAP00000034412 CON__ENSEMBL:ENSBTAP00000034412 103 114 yes yes 2 0.0044416 104.43 By matching By MS/MS 6.33 0.471 2 1 1 2 16245000 0 1524200 14721000 + 2146 29 2242 9146;9147;9148 7528 7528 1 0 527610 2422100 DRDGYSYGSR CGERVIVEHARGPRRDRDGYSYGSRSGGGG RGPRRDRDGYSYGSRSGGGGYSSRRTSGRD R D R S R S 0 2 0 2 0 0 0 2 0 0 0 0 0 0 0 2 0 0 2 0 0 0 10 1 1174.5003 Q13247 Q13247 76 85 SRSF6 Serine/arginine-rich splicing factor 6 yes yes 2 0.032812 99.568 By MS/MS 5 0 1 1 1232200 0 1232200 0 2147 1234 2243 9149 7529 7529 1 0 317630 0 DRDHFQLGTLSHTLNIK FLAQKPAPLLESPFKDRDHFQLGTLSHTLN DHFQLGTLSHTLNIKATGYLELSNWPEVAP K D R I K A 0 1 1 2 0 1 0 1 2 1 3 1 0 1 0 1 2 0 0 0 0 0 17 1 1994.0334 O00203 O00203 613 629 AP3B1 AP-3 complex subunit beta-1 yes yes 4 0.020065 45.221 By MS/MS 2 0.816 1 1 1 3 22622000 0 0 22622000 2148 111 2244 9150;9151;9152 7530 7530 1 0 0 4966200 DRDWSHSGNPGASR QKPRNRGRSGGQAERDRDWSHSGNPGASRA RDRDWSHSGNPGASRAGEDARVLRDGFAEE R D R S R A 1 2 1 2 0 0 0 2 1 0 0 0 0 0 1 3 0 1 0 0 0 0 14 1 1540.6767 Q96MG7 Q96MG7 18 31 NDNL2 Melanoma-associated antigen G1 yes yes 3 0.0021338 82.109 By matching By MS/MS 6 0 2 1 1 3439900 0 849480 2590500 2149 1811 2245 9153;9154 7531 7531 1 0 294060 387560 DRDYSDHPSGGSYR DYPSRGYSDRDGYGRDRDYSDHPSGGSYRD RDRDYSDHPSGGSYRDSYESYGNSRSAPPT R D R Y R D 0 2 0 3 0 0 0 2 1 0 0 0 0 0 1 3 0 0 2 0 0 0 14 1 1610.671 P38159;Q96E39 P38159 269 282 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3;4 1.9353E-106 269.04 By MS/MS By MS/MS 4.68 1.78 2 3 2 5 4 3 5 14 326330000 0 27691000 298640000 2150 771;1772 2246 9155;9156;9157;9158;9159;9160;9161;9162;9163;9164;9165;9166;9167;9168;9169;9170;9171;9172;9173 7532;7533;7534;7535;7536;7537;7538;7539;7540;7541;7542;7543;7544;7545;7546 7543 15 0 9721900 43737000 DREEALHQFR EGYACTSIHGDRSQRDREEALHQFRSGKSP DRSQRDREEALHQFRSGKSPILVATAVAAR R D R F R S 1 2 0 1 0 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1299.632 O00571;O15523 O00571 479 488 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 2.5392E-75 245.5 By MS/MS By MS/MS 3.58 1.66 1 2 4 2 1 1 1 4 8 278540000 0 44634000 233910000 2151 131 2247 9174;9175;9176;9177;9178;9179;9180;9181;9182;9183;9184;9185 7547;7548;7549;7550;7551;7552;7553;7554;7555 7553 9 0 18800000 44696000 DRELDLR AELIEQAAQYTNAVRDRELDLRGYKIPVIE AQYTNAVRDRELDLRGYKIPVIENLGATLD R D R L R G 0 2 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 915.47739 P09661 P09661 21 27 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 0.021208 137.9 By MS/MS 6.5 0.5 1 1 2 39181000 0 0 39181000 2152 491 2248 9186;9187 7556 7556 1 0 0 6720000 DREVGIPPEQSLETAK IAGRDITYFIQQLLRDREVGIPPEQSLETA REVGIPPEQSLETAKAVKERYSYVCPDLVK R D R A K A 1 1 0 1 0 1 3 1 0 1 1 1 0 0 2 1 1 0 0 1 0 0 16 1 1767.9003 P61158 P61158 210 225 ACTR3 Actin-related protein 3 yes yes 3 0.046963 40.515 By MS/MS By matching 5 0.816 1 1 1 2 1 9455900 0 5746800 3709200 2153 980 2249 9188;9189;9190 7557 7557 1 0 1752800 554930 DRGPFRPEPGDGGEK PGSRERGLGRSDFGRDRGPFRPEPGDGGEK DRGPFRPEPGDGGEKMYPYHRDEPPRAPWN R D R E K M 0 2 0 2 0 0 2 4 0 0 0 1 0 1 3 0 0 0 0 0 0 0 15 2 1612.7594 P49750 P49750 1165 1179 YLPM1 YLP motif-containing protein 1 yes yes 3 0.0037384 74.772 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 9754700 0 1880100 7874700 2154 865 2250 9191;9192;9193 7558;7559 7559 2 0 918950 1706500 DRLEIYEDVLFFLSK QMFGEMEVWNAISERDRLEIYEDVLFFLSK DRLEIYEDVLFFLSKKEKEQAKQLRKRNWE R D R S K K 0 1 0 2 0 0 2 0 0 1 3 1 0 2 0 1 0 0 1 1 0 0 15 1 1885.9826 O75400 O75400 503 517 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 3 0.00014917 102.78 By MS/MS 2 0 1 1 1738600 0 0 1738600 2155 258 2251 9194 7560 7560 1 0 0 392890 DRLLASTLVHSVK PVPLDDSNRPASLTKDRLLASTLVHSVKKE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP K D R V K K 1 1 0 1 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 13 1 1437.8304 Q9NYF8 Q9NYF8 568 580 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.019971 62.077 By matching By MS/MS 1.5 0.5 1 1 1 1 15086000 0 3754800 11332000 2156 2097 2252 9195;9196 7561 7561 1 0 1835300 2560700 DRLSASSLTMESFAFLWAGGR CLDTYNCDLHFKISRDRLSASSLTMESFAF SLTMESFAFLWAGGRASYGVSKGKVCFEMK R D R G R A 3 2 0 1 0 0 1 2 0 0 3 0 1 2 0 4 1 1 0 0 0 0 21 1 2301.1212 Q00839 Q00839 304 324 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 2.1906E-14 132.14 By MS/MS 2 0 1 1 7013100 0 0 7013100 2157 1127 2253 9197 7562 7562 1 0 0 1584800 DRPARHPQEQPLW FPSVSLQEASSFFQRDRPARHPQEQPLW__ QRDRPARHPQEQPLW_______________ R D R L W - 1 2 0 1 0 2 1 0 1 0 1 0 0 0 3 0 0 1 0 0 0 0 13 2 1628.8172 Q16378 Q16378 122 134 PRR4 Proline-rich protein 4 yes yes 2;3 4.2299E-09 175.15 By MS/MS 7.56 2.06 1 1 1 1 1 2 2 9 230570000 230570000 0 0 2158 1385 2254 9198;9199;9200;9201;9202;9203;9204;9205;9206 7563;7564;7565;7566;7567 7566 5 201460000 0 0 DRPASGSPFQLFLSK KSNAKLWNEVLASLKDRPASGSPFQLFLSK DRPASGSPFQLFLSKVEETFQCICCQELVF K D R S K V 1 1 0 1 0 1 0 1 0 0 2 1 0 2 2 3 0 0 0 0 0 0 15 1 1648.8573 Q96T88 Q96T88 703 717 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2;3 0.0014885 137.62 By MS/MS By MS/MS 3.71 1.67 2 2 1 1 1 2 5 27539000 0 6418100 21121000 2159 1841 2255 9207;9208;9209;9210;9211;9212;9213 7568;7569 7568 2 0 2890200 3941700 DRPFFAGLVK QASEDLLKEHYVDLKDRPFFAGLVKYMHSG YVDLKDRPFFAGLVKYMHSGPVVAMVWEGL K D R V K Y 1 1 0 1 0 0 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 0 10 1 1148.6342 P15531 P15531 57 66 NME1 Nucleoside diphosphate kinase A yes yes 2 0.014103 107.79 By MS/MS By MS/MS 8 0 2 1 1 62914000 0 6415700 56499000 2160 570 2256 9214;9215 7570;7571 7571 2 0 2918900 8661800 DRPFFPGLVK RASEEHLKQHYIDLKDRPFFPGLVKYMNSG YIDLKDRPFFPGLVKYMNSGPVVAMVWEGL K D R V K Y 0 1 0 1 0 0 0 1 0 0 1 1 0 2 2 0 0 0 0 1 0 0 10 1 1174.6499 P22392;O60361 P22392 57 66 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 2 0.044334 96.342 By matching By MS/MS 8 0 2 1 1 25195000 0 4225900 20969000 2161 631 2257 9216;9217 7572 7572 1 0 1922600 3214800 DSAHGFLK FQLFSSPHGKDLLFKDSAHGFLKVPPRMDA GKDLLFKDSAHGFLKVPPRMDAKMYLGYEY K D S L K V 1 0 0 1 0 0 0 1 1 0 1 1 0 1 0 1 0 0 0 0 0 0 8 0 873.43447 P02787 P02787 316 323 TF Serotransferrin yes yes 2 0.00056406 127.12 By MS/MS 7.2 2.48 1 1 1 1 1 5 30892000 30892000 0 0 2162 399 2258 9218;9219;9220;9221;9222 7573;7574;7575;7576;7577;7578 7574 6 29253000 0 0 DSAIGFSR QLFGSPSGQKDLLFKDSAIGFSRVPPRIDS QKDLLFKDSAIGFSRVPPRIDSGLYLGSGY K D S S R V 1 1 0 1 0 0 0 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 8 0 851.41373 P02788 P02788 321 328 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 0.001576 113.91 By MS/MS 5.8 3.66 1 1 1 1 1 5 164410000 164410000 0 0 2163 400 2259 9223;9224;9225;9226;9227 7579;7580;7581;7582;7583 7582 5 219150000 0 0 DSALETLQGQLEEK LERSLEAERASRAERDSALETLQGQLEEKA RDSALETLQGQLEEKAQELGHSQSALASAQ R D S E K A 1 0 0 1 0 2 3 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1559.7679 Q14980 Q14980 1161 1174 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.019051 75.739 By MS/MS 1 0 1 1 15951000 0 15951000 0 2164 1327 2260 9228 7584 7584 0 0 7796800 0 DSAQTSVTQAQR LEILQQQLQVANEARDSAQTSVTQAQREKA EARDSAQTSVTQAQREKAELSRKVEELQAC R D S Q R E 2 1 0 1 0 3 0 0 0 0 0 0 0 0 0 2 2 0 0 1 0 0 12 0 1290.6164 Q14980 Q14980 632 643 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.016204 87.258 By MS/MS 1 0 1 1 988090 0 988090 0 2165 1327 2261 9229 7585 7585 1 0 482960 0 DSATMSLDPEEEAEHPIK WTIIYNGTLVHEVWKDSATMSLDPEEEAEH TMSLDPEEEAEHPIKISYAQYEKYLKSDNM K D S I K I 2 0 0 2 0 0 4 0 1 1 1 1 1 0 2 2 1 0 0 0 0 0 18 0 1997.8888 Q08188 Q08188 537 554 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 3 3.9439E-06 104.2 By MS/MS 4.5 0.5 1 1 2 10251000 10251000 0 0 2166 1181 2262 9230;9231 7586 7586 1 8115400 0 0 DSAYQSITHYRPVSASR SEEECKDRERPMYGRDSAYQSITHYRPVSA AYQSITHYRPVSASRSSLDLSYYPTSSSTS R D S S R S 2 2 0 1 0 1 0 0 1 1 0 0 0 0 1 4 1 0 2 1 0 0 17 1 1936.9391 P50402 P50402 158 174 EMD Emerin yes yes 2;3;4 1.4162E-06 147.7 By MS/MS By MS/MS 5.07 1.83 1 1 1 1 2 5 3 2 12 384260000 0 42942000 341310000 2167 878 2263 9232;9233;9234;9235;9236;9237;9238;9239;9240;9241;9242;9243;9244;9245 7587;7588;7589;7590;7591;7592;7593;7594 7591 8 0 14865000 52037000 DSDEADLVLAK ATDSSGELMFLMKWKDSDEADLVLAKEANM MKWKDSDEADLVLAKEANMKCPQIVIAFYE K D S A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1174.5717 Q13185 Q13185 144 154 CBX3 Chromobox protein homolog 3 yes yes 2 0.003184 105.94 By matching By MS/MS 7.67 0.943 2 1 1 2 80628000 0 2182400 78446000 2168 1228 2264 9246;9247;9248 7595 7595 1 0 1253100 14559000 DSDKEGTSNSTSEDGPGDGFTILSSK SKAAKPRTSKKSKPKDSDKEGTSNSTSEDG SEDGPGDGFTILSSKSLVLGQKLSLTQSDI K D S S K S 0 0 1 4 0 0 2 4 0 1 1 2 0 1 1 6 3 0 0 0 0 0 26 1 2630.1467 Q9P0M6 Q9P0M6 164 189 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 5.8144E-51 200.48 By MS/MS 5 0 2 2 22734000 0 0 22734000 2169 2117 2265 9249;9250 7596;7597 7596 2 0 0 3170900 DSDPVMAGIGEEIAHFQK SLQPAVAEKQGHQWKDSDPVMAGIGEEIAH PVMAGIGEEIAHFQKELEELKARTSKACFQ K D S Q K E 2 0 0 2 0 1 2 2 1 2 0 1 1 1 1 1 0 0 0 1 0 0 18 0 1942.9095 P35658 P35658 698 715 NUP214 Nuclear pore complex protein Nup214 yes yes 3 0.011657 47.754 By MS/MS 1 0 1 1 1618700 0 0 1618700 2170 757 2266 9251 7598 7598 1 0 0 348770 DSDSGLEQMSIGHHIR RSAPGGIRETRRTVRDSDSGLEQMSIGHHI SDSGLEQMSIGHHIRDRAHILQRSRNHRTG R D S I R D 0 1 0 2 0 1 1 2 2 2 1 0 1 0 0 3 0 0 0 0 0 0 16 0 1780.8162 Q15773 Q15773 143 158 MLF2 Myeloid leukemia factor 2 yes yes 3 0.0015593 74.789 By matching By MS/MS 6 0 2 1 1 6356900 0 783310 5573600 2171 1381 2267 9252;9253 7599 7599 1 0 271150 833870 DSDYYNMLLK SAVKVLMKFLELLPKDSDYYNMLLKKLAPP ELLPKDSDYYNMLLKKLAPPLVTLLSGEPE K D S L K K 0 0 1 2 0 0 0 0 0 0 2 1 1 0 0 1 0 0 2 0 0 0 10 0 1260.5696 P63010 P63010 273 282 AP2B1 AP-2 complex subunit beta yes yes 2 0.017375 84.498 By MS/MS 2 0 1 1 7430000 0 0 7430000 2172 1057 2268 9254 7600 7600 1 0 0 1679000 DSEADRFSDSHNALR FSTLAGLVFEWTIVKDSEADRFSDSHNALR DSEADRFSDSHNALRILTFLESTYIPPSYI K D S L R I 2 2 1 3 0 0 1 0 1 0 1 0 0 1 0 3 0 0 0 0 0 0 15 1 1718.7608 Q8TEM1 Q8TEM1 164 178 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 6.6326E-05 124.78 By matching By MS/MS 1 0 2 1 1 7839200 591360 0 7247800 2173 1666 2269 9255;9256 7601 7601 1 591360 0 1561700 DSEEAEIIR VNYEKLKTDIKVVDRDSEEAEIIRKYVKNT IKVVDRDSEEAEIIRKYVKNTHATTHNAYD R D S I R K 1 1 0 1 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 9 0 1060.5037 P09874 P09874 807 815 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00093398 110.31 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 46006000 0 6422300 39584000 2174 492 2270 9257;9258;9259;9260 7602;7603 7603 2 0 2892100 8623900 DSEEAEIIRK VNYEKLKTDIKVVDRDSEEAEIIRKYVKNT KVVDRDSEEAEIIRKYVKNTHATTHNAYDL R D S R K Y 1 1 0 1 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 0 0 0 10 1 1188.5986 P09874 P09874 807 816 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 7.5518E-11 170.3 By matching By MS/MS 1.33 0.471 2 1 1 2 14380000 0 1292900 13087000 2175 492 2271 9261;9262;9263 7604;7605 7605 2 0 631970 2900800 DSEIMQQK KRRDDGLSAAARKQRDSEIMQQKQKKANEK AAARKQRDSEIMQQKQKKANEKKEEPK___ R D S Q K Q 0 0 0 1 0 2 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 8 0 977.4488 P84101 P84101 40 47 SERF2 Small EDRK-rich factor 2 yes yes 2 0.0069438 97.473 By MS/MS 9 0 1 1 2248500 0 0 2248500 2176 1112 2272 9264 7606 7606 1 0 0 718270 DSETGENIR LKEEISKMRELLARKDSETGENIRQAASSL ELLARKDSETGENIRQAASSLQQASLKLFE K D S I R Q 0 1 1 1 0 0 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 9 0 1019.452 P38646 P38646 626 634 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.025243 78.77 By matching By MS/MS 3 0 2 1 1 2247000 287220 0 1959800 2177 774 2273 9265;9266 7607 7607 1 331380 0 380110 DSETVDEDEEVDPALTVGTIK VEGPAAKRTMRPTQKDSETVDEDEEVDPAL EDEEVDPALTVGTIKKHTLSIGDMVTGTVK K D S I K K 1 0 0 4 0 0 4 1 0 1 1 1 0 0 1 1 3 0 0 3 0 0 21 0 2261.0434 Q14690 Q14690 1009 1029 PDCD11 Protein RRP5 homolog yes yes 2 1.7385E-13 142.85 By MS/MS 1 0 1 1 4802600 0 0 4802600 2178 1314 2274 9267 7608 7608 1 0 0 1034800 DSGFQMNQLR EDPQTFYYAVAVVKKDSGFQMNQLRGKKSC AVVKKDSGFQMNQLRGKKSCHTGLGRSAGW K D S L R G 0 1 1 1 0 2 0 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 10 0 1194.5452 P02787 P02787 123 132 TF Serotransferrin yes yes 2 1.4911E-22 192.31 By MS/MS 5.6 2.97 1 1 1 1 1 1 1 2 1 10 68561000 68561000 0 0 2179 399 2275;2276 9268;9269;9270;9271;9272;9273;9274;9275;9276;9277 7609;7610;7611;7612;7613;7614 7611 128 6 83984000 0 0 DSGNIPEAIASYR PAFADAHSNLASIHKDSGNIPEAIASYRTA HKDSGNIPEAIASYRTALKLKPDFPDAYCN K D S Y R T 2 1 1 1 0 0 1 1 0 2 0 0 0 0 1 2 0 0 1 0 0 0 13 0 1391.6681 O15294 O15294 441 453 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.046496 69.786 By MS/MS 2 0 1 1 3835300 0 0 3835300 2180 175 2277 9278 7615 7615 1 0 0 866710 DSGPLSDPITGKPYVPLLEAEEVR PELRLQSDDILPLGKDSGPLSDPITGKPYV TGKPYVPLLEAEEVRLSQSLLELWRRRGPV K D S V R L 1 1 0 2 0 0 3 2 0 1 3 1 0 0 4 2 1 0 1 2 0 0 24 1 2581.3275 Q7L2E3 Q7L2E3 389 412 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3 3.4245E-05 71.696 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 24255000 0 3780700 20474000 2181 1522 2278 9279;9280;9281 7616;7617 7617 2 0 1702500 4587100 DSGRDYVSQFEGSALGK DRVKDLATVYVDVLKDSGRDYVSQFEGSAL GRDYVSQFEGSALGKQLNLKLLDNWDSVTS K D S G K Q 1 1 0 2 0 1 1 3 0 0 1 1 0 1 0 3 0 0 1 1 0 0 17 1 1814.8435 P02647 P02647 48 64 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 1.0478E-05 151.56 By MS/MS 9 0 2 2 22132000 22132000 0 0 2182 389 2279 9282;9283 7618;7619 7618 2 12423000 0 0 DSGSFVAFQNIPGSELMSSFAK PRKVPRLSEKSVEERDSGSFVAFQNIPGSE FQNIPGSELMSSFAKTVVSHSLTTLGLEVA R D S A K T 2 0 1 1 0 1 1 2 0 1 1 1 1 3 1 5 0 0 0 1 0 0 22 0 2318.0889 P42166 P42166 441 462 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 6.5772E-43 201.3 By MS/MS 3 0 2 2 37874000 0 0 37874000 2183 798 2280 9284;9285 7620;7621 7620 2 0 0 7345800 DSGSQEVLSELR ELSQDAEPAGSQETKDSGSQEVLSELRVLS ETKDSGSQEVLSELRVLSQKLKENHQSRKQ K D S L R V 0 1 0 1 0 1 2 1 0 0 2 0 0 0 0 3 0 0 0 1 0 0 12 0 1318.6365 Q9BVJ6 Q9BVJ6 450 461 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.00010798 139.32 By matching By MS/MS 2 0 2 1 1 11508000 2377700 0 9130700 2184 1915 2281 9286;9287 7622 7622 1 2864900 0 2063400 DSILSEMK MQQIETQQRKFKASRDSILSEMKMLKEKRQ RKFKASRDSILSEMKMLKEKRQQSEKTFMP R D S M K M 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 8 0 921.44773 Q9UQE7 Q9UQE7 733 740 SMC3 Structural maintenance of chromosomes protein 3 yes yes 1;2 0.0044378 101.64 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 30558000 0 8562200 21996000 2185 2222 2282 9288;9289;9290;9291 7623;7624;7625 7623 2 0 3855700 4890700 DSIVQGFQWGTR TLPSEVDKALLGSVKDSIVQGFQWGTREGP SVKDSIVQGFQWGTREGPLCDELIRNVKFK K D S T R E 0 1 0 1 0 2 0 2 0 1 0 0 0 1 0 1 1 1 0 1 0 0 12 0 1392.6786 Q15029 Q15029 764 775 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 6.1538E-08 166.55 By matching By MS/MS By MS/MS 2.5 0.866 3 1 1 1 2 59893000 2615600 15270000 42008000 2186 1335 2283 9292;9293;9294;9295 7626;7627;7628 7627 2 3151500 6876200 9093100 DSLDPSFTHAMQLLTAEIEK MEPENKYLPELMAEKDSLDPSFTHAMQLLT SFTHAMQLLTAEIEKIQKGDSKKDDEENYL K D S E K I 2 0 0 2 0 1 2 0 1 1 3 1 1 1 1 2 2 0 0 0 0 0 20 0 2245.0936 Q07666 Q07666 112 131 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 9.7285E-46 211.75 By MS/MS 4 1.29 1 1 2 1 1 6 198240000 0 0 198240000 2187 1178 2284 9296;9297;9298;9299;9300;9301 7629;7630;7631;7632;7633 7631 5 0 0 33559000 DSLHEKFPDAGEDELLK DKIPYGMRFIAKVLKDSLHEKFPDAGEDEL LHEKFPDAGEDELLKIIGNLLYYRYMNPAI K D S L K I 1 0 0 3 0 0 3 1 1 0 3 2 0 1 1 1 0 0 0 0 0 0 17 1 1941.932 P46940 P46940 1169 1185 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 0.00036656 89.468 By MS/MS 2 0 1 1 5491400 0 5491400 0 2188 835 2285 9302 7634 7634 1 0 2472900 0 DSLIFLVDASK EENLEASGDYKYSGRDSLIFLVDASKAMFE YSGRDSLIFLVDASKAMFESQSEDELTPFD R D S S K A 1 0 0 2 0 0 0 0 0 1 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1206.6496 P12956 P12956 36 46 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00057913 118.67 By matching By MS/MS 2 0.816 1 1 1 1 2 38912000 0 1075500 37836000 2189 541 2286 9303;9304;9305 7635;7636 7635 2 0 525680 7419400 DSLIIIDELGR AEMLETASILRSATKDSLIIIDELGRGTST SATKDSLIIIDELGRGTSTYDGFGLAWAIS K D S G R G 0 1 0 2 0 0 1 1 0 3 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1242.682 P43246 P43246 742 752 MSH2 DNA mismatch repair protein Msh2 yes yes 2 4.6181E-07 156.46 By MS/MS 2 0 1 1 7990700 0 0 7990700 2190 813 2287 9306 7637 7637 1 0 0 1805700 DSLIQSLATQLELDGFER LQLQADRHQEHIRARDSLIQSLATQLELDG IQSLATQLELDGFERGPFSERQIKNFHKLV R D S E R G 1 1 0 2 0 2 2 1 0 1 4 0 0 1 0 2 1 0 0 0 0 0 18 0 2034.0269 Q92878 Q92878 368 385 RAD50 DNA repair protein RAD50 yes yes 2;3 4.2425E-12 167.89 By MS/MS 1.8 0.748 2 2 1 5 11851000 0 0 11851000 2191 1726 2288 9307;9308;9309;9310;9311 7638;7639 7639 2 0 0 2621900 DSLLASLLDGVR EFIKGQVRKYSSTERDSLLASLLDGVRASG TERDSLLASLLDGVRASGNRDVCVKMTPTH R D S V R A 1 1 0 2 0 0 0 1 0 0 4 0 0 0 0 2 0 0 0 1 0 0 12 0 1257.6929 O75165 O75165 312 323 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.027199 79.974 By MS/MS 1 0 1 1 2270400 0 0 2270400 2192 245 2289 9312 7640 7640 1 0 0 489190 DSLSPGQERPYSTVR GRLLPQVLNSWSIGRDSLSPGQERPYSTVR DSLSPGQERPYSTVRTKVYAILELWVQVCG R D S V R T 0 2 0 1 0 1 1 1 0 0 1 0 0 0 2 3 1 0 1 1 0 0 15 1 1690.8275 Q8IZL8 Q8IZL8 414 428 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2;3 7.6754E-05 138.45 By MS/MS By MS/MS 2.17 0.687 1 3 2 1 5 58520000 0 10194000 48326000 2193 1596 2290 9313;9314;9315;9316;9317;9318 7641;7642;7643;7644 7643 4 0 4590500 10353000 DSLTDLYVQHAIPLPQR EQKNIAVETDVRVNKDSLTDLYVQHAIPLP LTDLYVQHAIPLPQRDLPKNRWGKMMEKKR K D S Q R D 1 1 0 2 0 2 0 0 1 1 3 0 0 0 2 1 1 0 1 1 0 0 17 0 1965.032 Q9BVC5 Q9BVC5 47 63 C2orf49 Ashwin yes yes 3 0.00058883 80.534 By MS/MS 7 0 1 1 5525200 0 0 5525200 2194 1913 2291 9319 7645 7645 1 0 0 980400 DSLTLVFVETK DKRSFLLDLLNATGKDSLTLVFVETKKGAD ATGKDSLTLVFVETKKGADSLEDFLYHEGY K D S T K K 0 0 0 1 0 0 1 0 0 0 2 1 0 1 0 1 2 0 0 2 0 0 11 0 1250.6758 O00571 O00571 441 451 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 0.0031685 105.98 By MS/MS 3 0 1 1 3009000 0 3009000 0 2195 131 2292 9320 7646 7646 1 0 1282800 0 DSLTLVFVETKK DKRSFLLDLLNATGKDSLTLVFVETKKGAD TGKDSLTLVFVETKKGADSLEDFLYHEGYA K D S K K G 0 0 0 1 0 0 1 0 0 0 2 2 0 1 0 1 2 0 0 2 0 0 12 1 1378.7708 O00571 O00571 441 452 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 0.0026937 112.13 By MS/MS 3 0 1 1 3992500 0 3992500 0 2196 131 2293 9321 7647 7647 1 0 1702000 0 DSNPEEIEIDFETLKPSTLR GRVVHIIQAREPSLRDSNPEEIEIDFETLK EIEIDFETLKPSTLRELERYVLSCLRKKPR R D S L R E 0 1 1 2 0 0 4 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 20 1 2332.1434 P25440 P25440 678 697 BRD2 Bromodomain-containing protein 2 yes yes 2;3 3.4036E-56 220.46 By MS/MS 2 0 2 2 40566000 0 0 40566000 2197 658 2294 9322;9323 7648;7649 7649 2 0 0 9167100 DSPFGLSFVR RWDRVKIVCSQPYSKDSPFGLSFVRFHSPP QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ K D S V R F 0 1 0 1 0 0 0 1 0 0 1 0 0 2 1 2 0 0 0 1 0 0 10 0 1123.5662 P18887 P18887 139 148 XRCC1 DNA repair protein XRCC1 yes yes 2 0.00019622 121.05 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 19821000 0 4256300 15565000 2198 603 2295 9324;9325;9326 7650;7651 7651 2 0 1814500 3080900 DSPSVWAAVPGK MADGTCQDAAIVGYKDSPSVWAAVPGKTFV GYKDSPSVWAAVPGKTFVNITPAEVGVLVG K D S G K T 2 0 0 1 0 0 0 1 0 0 0 1 0 0 2 2 0 1 0 2 0 0 12 0 1212.6139 CON__P02584;P07737 P07737 27 38 PFN1 Profilin-1 no no 2 0.00046339 126.55 By MS/MS By MS/MS By MS/MS 9 0 3 1 1 1 43447000 16033000 6684400 20729000 + 2199 463;38 2296 9327;9328;9329 7652;7653;7654 7652 3 8999400 5352600 6621800 DSQDAGGFGPEDR QALHSLELHYQAFLRDSQDAGGFGPEDRLM LRDSQDAGGFGPEDRLMAEREYGSCSHHYQ R D S D R L 1 1 0 3 0 1 1 3 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 0 1349.5484 Q15149 Q15149 1076 1088 PLEC Plectin yes yes 2 0.0071252 94.465 By MS/MS 1 0 1 1 4244000 0 4244000 0 2200 1348 2297 9330 7655 7655 1 0 2074400 0 DSQEEEKTEALTSAK MLLDTWDQVFVWVGKDSQEEEKTEALTSAK DSQEEEKTEALTSAKRYIETDPANRDRRTP K D S A K R 2 0 0 1 0 1 4 0 0 0 1 2 0 0 0 2 2 0 0 0 0 0 15 1 1664.7741 P06396 P06396 714 728 GSN Gelsolin no no 2;3 1.5709E-16 188.96 By MS/MS 3 0 2 2 23522000 0 0 23522000 + 2201 440 2298 9331;9332 7656;7657 7656 2 0 0 4562100 DSQPWEQALGR LGPEEPLTTQQPRGKDSQPWEQALGRFWDY PRGKDSQPWEQALGRFWDYLRWVQTLSDQV K D S G R F 1 1 0 1 0 2 1 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 11 0 1285.6051 CON__Q03247 CON__Q03247 39 49 yes yes 2 2.0064E-09 164.96 By MS/MS By MS/MS By MS/MS 7.2 1.47 1 3 2 2 1 1 3 1 6 235480000 19603000 3901200 211970000 + 2202 72 2299 9333;9334;9335;9336;9337;9338;9339;9340;9341;9342 7658;7659;7660;7661;7662;7663;7664;7665;7666;7667;7668 7663 11 25296000 1350500 46761000 DSQVVQVVLDGLK QQNVIPPFCNLLSVKDSQVVQVVLDGLKNI VKDSQVVQVVLDGLKNILIMAGDEASTIAE K D S L K N 0 0 0 2 0 2 0 1 0 0 2 1 0 0 0 1 0 0 0 4 0 0 13 0 1398.7718 O00505 O00505 424 436 KPNA3 Importin subunit alpha-4 yes yes 2 0.00062718 119.34 By MS/MS By MS/MS 4 0 2 1 1 6348800 0 4074800 2274000 2203 126 2300 9343;9344 7669;7670 7669 1 0 1352300 371410 DSRPSQAAGDNQGDEAK SSKRKSAKEKKSSSKDSRPSQAAGDNQGDE RPSQAAGDNQGDEAKEQTFSGGTSQDTKAS K D S A K E 3 1 1 3 0 2 1 2 0 0 0 1 0 0 1 2 0 0 0 0 0 0 17 1 1744.7612 Q9Y2W1 Q9Y2W1 186 202 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 0.0014118 73.918 By MS/MS 2.5 0.5 1 1 2 4331400 0 4331400 0 2204 2252 2301 9345;9346 7671 7671 1 0 1940700 0 DSRPSQAAGDNQGDEAKEQTFSGGTSQDTK SSKRKSAKEKKSSSKDSRPSQAAGDNQGDE AKEQTFSGGTSQDTKASESSKPWPDATYGT K D S T K A 3 1 1 4 0 4 2 4 0 0 0 2 0 1 1 4 3 0 0 0 0 0 30 2 3111.3613 Q9Y2W1 Q9Y2W1 186 215 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 4 1.0476E-51 159.05 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 32608000 0 11357000 21251000 2205 2252 2302 9347;9348;9349;9350 7672;7673;7674 7672 3 0 5180500 4660600 DSSQILSASFDQTIR ERAHSKGVTCLSFSKDSSQILSASFDQTIR DSSQILSASFDQTIRIHGLKSGKTLKEFRG K D S I R I 1 1 0 2 0 2 0 0 0 2 1 0 0 1 0 4 1 0 0 0 0 0 15 0 1666.8162 Q2TAY7 Q2TAY7 318 332 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 3.7918E-16 162.68 By MS/MS By MS/MS 4 0 2 1 1 29792000 0 29792000 0 2206 1407 2303 9351;9352 7675;7676 7676 2 0 9887000 0 DSSQVHPLAVLLLTDGDVHIR TYFMAVKSNGSVFVRDSSQVHPLAVLLLTD PLAVLLLTDGDVHIRDDGRRATISLSDSDL R D S I R D 1 1 0 3 0 1 0 1 2 1 4 0 0 0 1 2 1 0 0 3 0 0 21 0 2284.2175 Q7L2E3 Q7L2E3 1090 1110 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3;4 3.7163E-08 103.95 By MS/MS 1.67 0.471 1 2 3 23383000 0 0 23383000 2207 1522 2304 9353;9354;9355 7677;7678 7678 2 0 0 5256100 DSTEYFIVFEPR AEIMSLVLAESSPGRDSTEYFIVFEPRLPL PGRDSTEYFIVFEPRLPLLSRTLEPYILPF R D S P R L 0 1 0 1 0 0 2 0 0 1 0 0 0 2 1 1 1 0 1 1 0 0 12 0 1501.7089 A6NHR9 A6NHR9 1585 1596 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00087788 119.53 By MS/MS By MS/MS 1 0 2 1 1 9854500 0 1179400 8675000 2208 15 2305 9356;9357 7679;7680 7680 2 0 576500 1869200 DSTLIMQLLR DAIAELDTLSEESYKDSTLIMQLLRDNLTL EESYKDSTLIMQLLRDNLTLWTSDMQGDGE K D S L R D 0 1 0 1 0 1 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 10 0 1188.6536 P31947;P62258;P63104;P27348;P31946;P61981;Q04917 P62258 216 225 SFN;YWHAE;YWHAZ;YWHAQ;YWHAB;YWHAG;YWHAH 14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta no no 2 5.4241E-07 157.58 By MS/MS By MS/MS By MS/MS 6.38 1.27 2 4 6 1 2 6 5 244090000 5842300 22556000 215690000 2209 1011;1059;724;676;1003;1162;725 2306;2307 9358;9359;9360;9361;9362;9363;9364;9365;9366;9367;9368;9369;9370 7681;7682;7683;7684;7685;7686;7687;7688;7689 7685 305 9 11946000 10545000 36371000 DSTYSLSSTLTLSK QSGNSQESVTEQDSKDSTYSLSSTLTLSKA KDSTYSLSSTLTLSKADYEKHKVYACEVTH K D S S K A 0 0 0 1 0 0 0 0 0 0 3 1 0 0 0 5 3 0 1 0 0 0 14 0 1501.7512 P01834;P0DOX7 P01834 63 76 IGKC Ig kappa chain C region no no 2 0.00012439 154.15 By MS/MS 9.5 0.5 1 1 2 71897000 71897000 0 0 2210 380;504 2308 9371;9372 7690;7691 7691 2 66993000 0 0 DSWLDNIDWVK DADGNYFLNRDAQIRDSWLDNIDWVKIRER AQIRDSWLDNIDWVKIRERPPGQRQASDSE R D S V K I 0 0 1 3 0 0 0 0 0 1 1 1 0 0 0 1 0 2 0 1 0 0 11 0 1389.6565 O95400 O95400 117 127 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 2 0.05488 72.643 By MS/MS 5 0 1 1 1669800 0 0 1669800 2211 324 2309 9373 7692 7692 1 0 0 232900 DSWVDIFR SSLPAAFKHFALMQRDSWVDIFRLLFWGGS HFALMQRDSWVDIFRLLFWGGSYGGAGQPQ R D S F R L 0 1 0 2 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 1 0 0 8 0 1036.4978 CON__Q3ZBS7 CON__Q3ZBS7 315 322 yes yes 1;2 1.5721E-06 162.07 By MS/MS By MS/MS By MS/MS 4.53 1.85 1 1 4 4 4 2 1 2 5 3 11 354120000 110330000 3625700 240160000 + 2212 88 2310 9374;9375;9376;9377;9378;9379;9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390;9391;9392 7693;7694;7695;7696;7697;7698;7699;7700;7701;7702;7703;7704;7705;7706;7707;7708;7709 7700 16 95247000 1143700 41741000 DSYDSYATHNE QSGGYSDRSSGGSYRDSYDSYATHNE____ GSYRDSYDSYATHNE_______________ R D S N E - 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 2 1 0 2 0 0 0 11 0 1300.4844 Q14011 Q14011 162 172 CIRBP Cold-inducible RNA-binding protein yes yes 2 1.6641E-07 161.27 By MS/MS By MS/MS By MS/MS 7.4 0.49 3 2 2 1 2 56763000 15845000 6792400 34125000 2213 1280 2311 9393;9394;9395;9396;9397 7710;7711;7712;7713;7714 7711 5 17571000 3900200 5933200 DSYESYGNSR RDRDYSDHPSGGSYRDSYESYGNSRSAPPT GGSYRDSYESYGNSRSAPPTRGPPPSYGGS R D S S R S 0 1 1 1 0 0 1 1 0 0 0 0 0 0 0 3 0 0 2 0 0 0 10 0 1176.4683 P38159;Q96E39 P38159 283 292 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.00037934 138.06 By MS/MS 5.5 0.5 1 1 2 17900000 0 17900000 0 2214 771;1772 2312 9398;9399 7715;7716 7715 2 0 5172800 0 DSYVGDEAQSK GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL MGQKDSYVGDEAQSKRGILTLKYPIEHGIV K D S S K R 1 0 0 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 11 0 1197.515 P60709;P63261;P68032;P63267;P68133;P62736 P60709 51 61 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle no no 2 2.0093E-13 177.3 By MS/MS By MS/MS By MS/MS 5.55 2.06 1 2 2 6 3 3 1 1 1 1 9 10 1049200000 9050900 559020000 481160000 2215 966;1069;1075 2313 9400;9401;9402;9403;9404;9405;9406;9407;9408;9409;9410;9411;9412;9413;9414;9415;9416;9417;9418;9419 7717;7718;7719;7720;7721;7722;7723;7724;7725;7726;7727;7728;7729;7730;7731 7727 15 7250900 153170000 72503000 DSYVGDEAQSKR GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL GQKDSYVGDEAQSKRGILTLKYPIEHGIVT K D S K R G 1 1 0 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 1 1 0 0 12 1 1353.6161 P60709;P63261;P68032;P63267;P68133;P62736 P60709 51 62 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle no no 2;3 5.3662E-26 205.83 By MS/MS By MS/MS 4.07 1.65 1 2 3 2 4 2 1 12 3 298440000 0 257130000 41302000 2216 966;1069;1075 2314 9420;9421;9422;9423;9424;9425;9426;9427;9428;9429;9430;9431;9432;9433;9434 7732;7733;7734;7735;7736;7737;7738;7739;7740;7741 7734 10 0 73653000 5760900 DTAAWTVGR PTLIELMKDPSVVVRDTAAWTVGRICELLP PSVVVRDTAAWTVGRICELLPEAAINDVYL R D T G R I 2 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 1 0 1 0 0 9 0 975.47739 Q14974 Q14974 426 434 KPNB1 Importin subunit beta-1 yes yes 2 0.016553 84.498 By matching By MS/MS 2.5 0.5 1 1 1 1 9149600 3548400 0 5601200 2217 1325 2315 9435;9436 7742 7742 1 4275400 0 1086400 DTAYPETNDAIPMISK PGEVTFLPLNKLDVRDTAYPETNDAIPMIS TAYPETNDAIPMISKLRYNPRFDKAFKHVF R D T S K L 2 0 1 2 0 0 1 0 0 2 0 1 1 0 2 1 2 0 1 0 0 0 16 0 1764.824 Q9UQE7 Q9UQE7 597 612 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00098263 95.417 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 61810000 0 13427000 48383000 2218 2222 2316 9437;9438;9439;9440 7743;7744;7745;7746 7746 4 0 6175000 10781000 DTDEADLVLAK ATDSCGDLMFLMKWKDTDEADLVLAKEANV MKWKDTDEADLVLAKEANVKCPQIVIAFYE K D T A K E 2 0 0 3 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1188.5874 P45973 P45973 144 154 CBX5 Chromobox protein homolog 5 yes yes 2 0.0082139 94.692 By MS/MS 6.5 0.5 1 1 2 46419000 0 0 46419000 2219 820 2317 9441;9442 7747 7747 1 0 0 8168600 DTDSEEEIR IDFPEFLTMMARKMKDTDSEEEIREAFRVF MARKMKDTDSEEEIREAFRVFDKDGNGYIS K D T I R E 0 1 0 2 0 0 3 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 9 0 1092.4571 P0DP25;P0DP24;P0DP23 P0DP25 79 87 yes no 2 8.3534E-05 144.38 By MS/MS 8 0.816 1 1 1 3 16332000 0 0 16332000 2220 505 2318 9443;9444;9445 7748 7748 1 0 0 2684300 DTDSEEEIREAFR IDFPEFLTMMARKMKDTDSEEEIREAFRVF MKDTDSEEEIREAFRVFDKDGNGYISAAEL K D T F R V 1 2 0 2 0 0 4 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 13 1 1595.7063 P0DP25;P0DP24;P0DP23 P0DP25 79 91 yes no 2;3 5.4409E-07 172.8 By matching By MS/MS 8 0 3 1 2 10852000 0 958830 9893400 2221 505 2319 9446;9447;9448 7749;7750 7750 2 0 436240 1516800 DTEEEDFHVDQVTTVK YIFFKGKWERPFEVKDTEEEDFHVDQVTTV TEEEDFHVDQVTTVKVPMMKRLGMFNIQHC K D T V K V 0 0 0 3 0 1 3 0 1 0 0 1 0 1 0 0 3 0 0 3 0 0 16 0 1890.8483 P01009 P01009 226 241 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 7.1861E-110 270.21 By MS/MS 9 0 1 1 6958200 6958200 0 0 2222 367 2320 9449 7751 7751 1 3905700 0 0 DTELAEELLQWFLQEEK DSLYKDAMQYASESKDTELAEELLQWFLQE ELAEELLQWFLQEEKRECFGACLFTCYDLL K D T E K R 1 0 0 1 0 2 5 0 0 0 4 1 0 1 0 0 1 1 0 0 0 0 17 0 2120.0314 Q00610 Q00610 1546 1562 CLTC Clathrin heavy chain 1 yes yes 2;3 9.3001E-06 102.65 By MS/MS 2 0 2 2 4024900 0 0 4024900 2223 1125 2321 9450;9451 7752;7753 7752 2 0 0 909560 DTELAEELLQWFLQEEKR DSLYKDAMQYASESKDTELAEELLQWFLQE LAEELLQWFLQEEKRECFGACLFTCYDLLR K D T K R E 1 1 0 1 0 2 5 0 0 0 4 1 0 1 0 0 1 1 0 0 0 0 18 1 2276.1325 Q00610 Q00610 1546 1563 CLTC Clathrin heavy chain 1 yes yes 3 2.645E-09 127.83 By MS/MS 2 0 1 1 4310300 0 0 4310300 2224 1125 2322 9452 7754 7754 1 0 0 974040 DTEMLATGAQDGK FMMMDDAVLCMCFSRDTEMLATGAQDGKIK SRDTEMLATGAQDGKIKVWKIQSGQCLRRF R D T G K I 2 0 0 2 0 1 1 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 13 0 1335.5976 Q2TAY7 Q2TAY7 275 287 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 2.0358E-07 169.37 By MS/MS 4.5 1.12 1 1 1 1 4 20226000 0 0 20226000 2225 1407 2323 9453;9454;9455;9456 7755;7756 7756 2 0 0 3322000 DTEQVDNWMSK RQQYEQCMDLQLFYRDTEQVDNWMSKQEAF LFYRDTEQVDNWMSKQEAFLLNEDLGDSLD R D T S K Q 0 0 1 2 0 1 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 0 11 0 1351.5714 Q13813 Q13813 475 485 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 2.0899E-08 163.64 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 32091000 0 13086000 19005000 2226 1268 2324 9457;9458;9459 7757;7758 7757 2 0 6353300 4095000 DTFEHDPSESIDEFNK QEESPLKSKSQEEPKDTFEHDPSESIDEFN TFEHDPSESIDEFNKSSATSGDIWPGLSAY K D T N K S 0 0 1 3 0 0 3 0 1 1 0 1 0 2 1 2 1 0 0 0 0 0 16 0 1908.8014 Q9NYF8 Q9NYF8 189 204 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 1.0123E-109 270.02 By MS/MS 2 0 1 1 11411000 0 0 11411000 2227 2097 2325 9460 7759 7759 1 0 0 2578600 DTGELASSFLEFMR ALHSLLKRVVSTFSKDTGELASSFLEFMRQ KDTGELASSFLEFMRQILNSDTIGCCGDDN K D T M R Q 1 1 0 1 0 0 2 1 0 0 2 0 1 2 0 2 1 0 0 0 0 0 14 0 1601.7396 Q69YN4 Q69YN4 1389 1402 KIAA1429 Protein virilizer homolog yes yes 2 1.2387E-45 225.93 By MS/MS By MS/MS 1 0 2 1 1 7183400 0 700170 6483200 2228 1468 2326 9461;9462 7760;7761 7761 2 0 342230 1396900 DTGIFLDLMHLK SAKASRARTKAGDLRDTGIFLDLMHLKKPG DLRDTGIFLDLMHLKKPGGFDISLFYRDII R D T L K K 0 0 0 2 0 0 0 1 1 1 3 1 1 1 0 0 1 0 0 0 0 0 12 0 1401.7326 P12956 P12956 195 206 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 0.0020343 109.79 By MS/MS By MS/MS By MS/MS 3.88 1.54 2 8 1 1 3 1 1 8 7 213830000 2343900 43815000 167670000 2229 541 2327;2328 9463;9464;9465;9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478 7762;7763;7764;7765;7766;7767;7768;7769;7770;7771 7764 237 9 2704300 18277000 32436000 DTGKTPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K D T H R I 1 1 0 1 0 0 2 1 1 1 0 1 0 0 2 0 2 0 0 2 0 0 15 1 1647.858 P60866 P60866 5 19 RPS20 40S ribosomal protein S20 yes yes 3;4 0.0001007 113.4 By MS/MS By MS/MS 8.33 0.471 4 2 2 4 27335000 0 9991900 17344000 2230 968 2329 9479;9480;9481;9482;9483;9484 7772;7773;7774;7775 7773 4 0 4546000 3518700 DTGLGLSPTASLR DTITEWKAGALCLSRDTGLGLSPTASLRVF SRDTGLGLSPTASLRVFQPFFVELTMPYSV R D T L R V 1 1 0 1 0 0 0 2 0 0 3 0 0 0 1 2 2 0 0 0 0 0 13 0 1286.683 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 780 792 yes yes 2 6.8593E-45 221.52 By MS/MS By MS/MS By MS/MS 6.67 2.96 1 2 1 1 3 2 2 3 6 6 3 201340000 88630000 62810000 49897000 + 2231 28 2330 9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495;9496;9497;9498;9499 7776;7777;7778;7779;7780;7781;7782;7783;7784;7785;7786;7787;7788 7788 13 130320000 64675000 25424000 DTGNFVIGQILSDQSR KGLDIVRRDWCDLAKDTGNFVIGQILSDQS TGNFVIGQILSDQSRDTIVENIQKRLIEIG K D T S R D 0 1 1 2 0 2 0 2 0 2 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1748.8693 P09884 P09884 1090 1105 POLA1 DNA polymerase alpha catalytic subunit yes yes 2 0.00012209 101.39 By MS/MS 1 0 1 1 1771500 0 1771500 0 2232 493 2331 9500 7789 7789 1 0 865910 0 DTGNIFSEPVPLSEVPDYLDHIK FLILLRKTLEQLQEKDTGNIFSEPVPLSEV PVPLSEVPDYLDHIKKPMDFFTMKQNLEAY K D T I K K 0 0 1 3 0 0 2 1 1 2 2 1 0 1 3 2 1 0 1 2 0 0 23 0 2584.2697 P55201 P55201 648 670 BRPF1 Peregrin yes yes 3 7.8653E-05 71.042 By MS/MS 1.5 0.5 1 1 2 3709700 0 0 3709700 2233 939 2332 9501;9502 7790 7790 1 0 0 816140 DTHDQLSEPSEVR HLPLEVAYQRGYLNKDTHDQLSEPSEVRSY NKDTHDQLSEPSEVRSYVDPSTDERLSYTQ K D T V R S 0 1 0 2 0 1 2 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1511.6852 Q15149 Q15149 3969 3981 PLEC Plectin yes yes 2;3 1.3921E-05 162.38 By MS/MS By MS/MS 1 0 3 2 1 18039000 0 13051000 4987800 2234 1348 2333 9503;9504;9505 7791;7792;7793 7793 3 0 6379000 1074700 DTILAELLQIHK NSEKKKKRDTPMLPKDTILAELLQIHKEHI LPKDTILAELLQIHKEHIVGYHEHDSLLDH K D T H K E 1 0 0 1 0 1 1 0 1 2 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1392.7977 P46100 P46100 2234 2245 ATRX Transcriptional regulator ATRX yes yes 3 0.013331 67.456 By MS/MS 2 0.816 1 1 1 3 8961400 0 0 8961400 2235 825 2334 9506;9507;9508 7794;7795 7794 2 0 0 1945500 DTLALLQK LKRAKKKQLRSIEKRDTLALLQKQPPQQPA LRSIEKRDTLALLQKQPPQQPAAKI_____ R D T Q K Q 1 0 0 1 0 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 900.52803 Q9H6F5 Q9H6F5 343 350 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 3.9653E-06 159.19 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 4 1 46674000 0 33096000 13578000 2236 1986 2335 9509;9510;9511;9512;9513 7796;7797 7796 2 0 11532000 2217700 DTLGLFLR TGKTARAIRDMCLEKDTLGLFLREGSASTE RDMCLEKDTLGLFLREGSASTEVLRTEAEQ K D T L R E 0 1 0 1 0 0 0 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 933.52837 O75643 O75643 746 753 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 2.351E-05 152.26 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 53622000 1048300 30332000 22242000 2237 277 2336 9514;9515;9516;9517;9518 7798;7799;7800;7801 7798 4 1048300 14779000 4811200 DTLGSWQR LKKHLVSAGYVHVNRDTLGSWQRCVTTCET GYVHVNRDTLGSWQRCVTTCETALKQGKRV R D T Q R C 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 8 0 961.46174 Q96T60 Q96T60 397 404 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2 0.061956 69.998 By MS/MS 4 0 1 1 4702000 0 0 4702000 2238 1840 2337 9519 7802 7802 1 0 0 767990 DTLMISR LLGGPSVFLFPPKPKDTLMISRTPEVTCVV FLFPPKPKDTLMISRTPEVTCVVVDVSHED K D T S R T 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 7 0 834.42694 P0DOX5;P01857;P01859;P01860;P01861 P0DOX5 251 257 IGHG1;IGHG2;IGHG3;IGHG4 Ig gamma-1 chain C region;Ig gamma-2 chain C region;Ig gamma-3 chain C region;Ig gamma-4 chain C region no no 2 0.020182 82.305 By MS/MS 9.5 0.5 1 1 2 39667000 39667000 0 0 2239 381;383;382;384 2338 9520;9521 7803;7804 7804 121 1 47996000 0 0 DTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE R D T V R E 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 8 0 965.48181 P62906 P62906 8 15 RPL10A 60S ribosomal protein L10a yes yes 2 0.00018411 140.98 By MS/MS By MS/MS 7.2 1.47 2 2 1 3 2 488290000 0 178550000 309740000 2240 1049 2339 9522;9523;9524;9525;9526 7805;7806;7807;7808;7809 7808 5 0 123250000 54265000 DTMSDLPEVR ITRLSSGPFRTITVRDTMSDLPEVRNGASA TITVRDTMSDLPEVRNGASALEISYNGEPQ R D T V R N 0 1 0 2 0 0 1 0 0 0 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1161.5336 P26358 P26358 1369 1378 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.0041356 99.802 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 12721000 0 5424900 7295700 2241 667 2340 9527;9528;9529 7810;7811 7810 2 0 2589800 1572000 DTNGENIAESLVAEGLATR KTPQGREYGMIYLGKDTNGENIAESLVAEG ENIAESLVAEGLATRREGMRANNPEQNRLS K D T T R R 3 1 2 1 0 0 3 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 19 0 1958.9545 Q7KZF4 Q7KZF4 117 135 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 4.6277E-65 233.28 By MS/MS By MS/MS 1.86 0.639 2 4 1 4 3 35961000 0 10861000 25101000 2242 1518 2341 9530;9531;9532;9533;9534;9535;9536 7812;7813;7814;7815 7814 4 0 4940200 5600500 DTNGSQFFITTVK KHYGPGWVSMANAGKDTNGSQFFITTVKTA GKDTNGSQFFITTVKTAWLDGKHVVFGKVL K D T V K T 0 0 1 1 0 1 0 1 0 1 0 1 0 2 0 1 3 0 0 1 0 0 13 0 1456.7198 P23284 P23284 146 158 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.00033196 143.24 By MS/MS By MS/MS By MS/MS 7 0 3 1 1 1 273020000 6766400 89747000 176500000 2243 640 2342 9537;9538;9539 7816;7817;7818 7817 3 14583000 51533000 31319000 DTNMGAWFEAQVVR TELGLYKVNEYVDARDTNMGAWFEAQVVRV RDTNMGAWFEAQVVRVTRKAPSRDEPCSST R D T V R V 2 1 1 1 0 1 1 1 0 0 0 0 1 1 0 0 1 1 0 2 0 0 14 0 1622.7511 Q96T88 Q96T88 145 158 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.0043352 89.9 By MS/MS 2.5 0.5 1 1 2 6818100 0 0 6818100 2244 1841 2343 9540;9541 7819 7819 1 0 0 1417200 DTNVMLVALAAK DYADLVKALKKVVGKDTNVMLVALAAKCLT VGKDTNVMLVALAAKCLTGLAVGLRKKFGQ K D T A K C 3 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 2 0 0 12 0 1244.6799 Q14008 Q14008 331 342 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0056947 101.65 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 28961000 0 2693300 26268000 2245 1279 2344 9542;9543;9544 7820;7821 7820 2 0 1316400 5736800 DTPDEPWAFPAR GNLARRAAATQPDAKDTPDEPWAFPAREFL DAKDTPDEPWAFPAREFLRKKLIGKEVCFT K D T A R E 2 1 0 2 0 0 1 0 0 0 0 0 0 1 3 0 1 1 0 0 0 0 12 0 1400.6361 Q7KZF4 Q7KZF4 72 83 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0016003 111.46 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 22898000 0 5524100 17374000 2246 1518 2345 9545;9546;9547 7822;7823;7824 7823 3 0 2518200 3926200 DTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLK GPLLPLPSRYRMGSRDTPELVAYPLPQASS PSGSVVMVSGLHQLKMNCSRVFNLFCLYGN R D T L K M 2 0 1 1 0 2 1 4 2 0 4 1 2 0 4 6 1 0 2 4 0 0 37 0 3852.8815 Q8WVV9 Q8WVV9 310 346 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes yes 4 2.9761E-13 61.099 By matching By MS/MS 3.5 0.5 1 1 1 1 16423000 0 1547400 14876000 2247 1685 2346 9548;9549 7825 7825 1 0 659660 2429700 DTPGHGSGWAETPR SARKNRWDETPKTERDTPGHGSGWAETPRT RDTPGHGSGWAETPRTDRGGDSIGETPTPG R D T P R T 1 1 0 1 0 0 1 3 1 0 0 0 0 0 2 1 2 1 0 0 0 0 14 0 1466.6539 O75533 O75533 302 315 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 0.0003377 103.85 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 25842000 0 12105000 13737000 2248 270 2347 9550;9551;9552;9553;9554 7826;7827;7828 7828 3 0 5560900 3062400 DTPITHISFHPK RTVQKQGFHHLWLQRDTPITHISFHPKRPM LQRDTPITHISFHPKRPMHILLHDAYMFCI R D T P K R 0 0 0 1 0 0 0 0 2 2 0 1 0 1 2 1 2 0 0 0 0 0 12 0 1391.7197 Q969X6 Q969X6 580 591 CIRH1A Cirhin yes yes 3 0.02071 61.375 By MS/MS 3 0 1 1 13448000 0 13448000 0 2249 1746 2348 9555 7829 7829 1 0 5732800 0 DTPLYTDNTANGIALLWAPR DEEFELPEFVEPFLKDTPLYTDNTANGIAL TDNTANGIALLWAPRPFNLRSGRTRRALDI K D T P R P 3 1 2 2 0 0 0 1 0 1 3 0 0 0 2 0 3 1 1 0 0 0 20 0 2201.1117 Q6P2Q9 Q6P2Q9 390 409 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 4.4892E-57 220.31 By MS/MS By MS/MS 1 0 4 2 2 14096000 0 3981000 10115000 2250 1490 2349 9556;9557;9558;9559 7830;7831;7832;7833 7833 4 0 1945800 2179400 DTPLYTDNTANGIALLWAPRPFNLR DEEFELPEFVEPFLKDTPLYTDNTANGIAL NGIALLWAPRPFNLRSGRTRRALDIPLVKN K D T L R S 3 2 3 2 0 0 0 1 0 1 4 0 0 1 3 0 3 1 1 0 0 0 25 1 2828.461 Q6P2Q9 Q6P2Q9 390 414 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 1.1876E-28 147.53 By MS/MS 1 0 1 1 9842600 0 0 9842600 2251 1490 2350 9560 7834 7834 1 0 0 2120700 DTPTSAGPNSFNK EMPPEAKMRMKNIGRDTPTSAGPNSFNKGK GRDTPTSAGPNSFNKGKHGFSDNQKLWERN R D T N K G 1 0 2 1 0 0 0 1 0 0 0 1 0 1 2 2 2 0 0 0 0 0 13 0 1334.6103 Q8WW12 Q8WW12 138 150 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2 0.03047 74.944 By MS/MS 7 0 1 1 1905800 0 1905800 0 2252 1686 2351 9561 7835 7835 1 0 1094300 0 DTPVELLAPLPPYFSR HLHLHRLLLPGTRARDTPVELLAPLPPYFS TPVELLAPLPPYFSRTLQCLGLRLQ_____ R D T S R T 1 1 0 1 0 0 1 0 0 0 3 0 0 1 4 1 1 0 1 1 0 0 16 0 1813.9614 Q6P087 Q6P087 326 341 RPUSD3 RNA pseudouridylate synthase domain-containing protein 3 yes yes 2 8.5932E-05 106.26 By matching By MS/MS 6 0 2 1 1 6360700 0 1616500 4744100 2253 1484 2352 9562;9563 7836 7836 1 0 559590 709770 DTQSGSLLFIGR PKLFYADHPFIFLVRDTQSGSLLFIGRLVR LVRDTQSGSLLFIGRLVRPKGDKMRDEL__ R D T G R L 0 1 0 1 0 1 0 2 0 1 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1292.6725 P50454 P50454 394 405 SERPINH1 Serpin H1 yes yes 2 4.5206E-05 147.4 By MS/MS By MS/MS 6.67 2.43 1 2 1 2 3 3 49541000 0 22408000 27133000 2254 879 2353 9564;9565;9566;9567;9568;9569 7837;7838;7839;7840;7841;7842 7838 6 0 18752000 16500000 DTQSIIFLGK IVRVNRPFLIAIVLKDTQSIIFLGKVTNPS AIVLKDTQSIIFLGKVTNPSEA________ K D T G K V 0 0 0 1 0 1 0 1 0 2 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1120.6128 CON__Q9TTE1;CON__A2I7N1;CON__A2I7N0 CON__Q9TTE1 395 404 yes no 2 0.0083854 90.601 By MS/MS By matching By matching 9.67 0.471 1 2 1 1 1 7438600 1824300 1370600 4243800 + 2255 100 2354 9570;9571;9572 7843 7843 1 1024000 6933900 9281600 DTSFEQHVLWHTGGK ARFPQLDSTSFANSRDTSFEQHVLWHTGGK DTSFEQHVLWHTGGKGVDLVLNSLAEEKLQ R D T G K G 0 0 0 1 0 1 1 2 2 0 1 1 0 1 0 1 2 1 0 1 0 0 15 0 1740.822 P49327 P49327 1725 1739 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 0.0097835 58.885 By matching By MS/MS 1 0 2 1 1 9494000 1812200 0 7681800 2256 853 2355 9573;9574 7844 7844 1 1812200 0 1655200 DTSFLGSDDIGNIDVR QSALYDALFSSQSPKDTSFLGSDDIGNIDV TSFLGSDDIGNIDVREPELEDLTRYDVGAI K D T V R E 0 1 1 4 0 0 0 2 0 2 1 0 0 1 0 2 1 0 0 1 0 0 16 0 1722.8061 P49792 P49792 397 412 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 5.4567E-19 193.73 By MS/MS 1.5 0.5 1 1 2 13528000 0 0 13528000 2257 871 2356 9575;9576 7845 7845 1 0 0 3000100 DTSVEGSEMVPGK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE GRDTSVEGSEMVPGKVELQEKVVQVSAGDS R D T G K V 0 0 0 1 0 0 2 2 0 0 0 1 1 0 1 2 1 0 0 2 0 0 13 0 1334.6024 P18754 P18754 102 114 RCC1 Regulator of chromosome condensation yes yes 2 0.0024263 107.55 By MS/MS By MS/MS 4.6 0.49 2 3 1 4 130500000 0 3664500 126840000 2258 599 2357;2358 9577;9578;9579;9580;9581 7846;7847;7848;7849 7849 262 4 0 944580 18039000 DTSVEGSEMVPGKVELQEK QVYSFGCNDEGALGRDTSVEGSEMVPGKVE EGSEMVPGKVELQEKVVQVSAGDSHTAALT R D T E K V 0 0 0 1 0 1 4 2 0 0 1 2 1 0 1 2 1 0 0 3 0 0 19 1 2060.9936 P18754 P18754 102 120 RCC1 Regulator of chromosome condensation yes yes 2;3 1.1763E-180 302.28 By MS/MS 4.5 0.5 2 2 4 108460000 0 0 108460000 2259 599 2359 9582;9583;9584;9585 7850;7851 7850 2 0 0 15498000 DTTALSFFHMLNGAALR INILKEMKEKDVLIKDTTALSFFHMLNGAA TALSFFHMLNGAALRGEIETVKQLHEAIVT K D T L R G 3 1 1 1 0 0 0 1 1 0 3 0 1 2 0 1 2 0 0 0 0 0 17 0 1863.9302 P42704 P42704 783 799 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.0038731 61.641 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 4222600 0 3235400 987220 2260 808 2360 9586;9587;9588 7852;7853 7852 2 0 1465000 223090 DTVLEPYADPYYDYEIER EVFRDWNSRIPRDVRDTVLEPYADPYYDYE LEPYADPYYDYEIERFWRGGQYENFRVQYT R D T E R F 1 1 0 3 0 0 3 0 0 1 1 0 0 0 2 0 1 0 4 1 0 0 18 0 2250.0005 Q86VM9 Q86VM9 361 378 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 2 1.9815E-22 186.13 By MS/MS 1.5 0.5 1 1 2 17586000 0 0 17586000 2261 1553 2361 9589;9590 7854;7855 7855 2 0 0 3930500 DTYIENEK SAVEAERLVAGKLKKDTYIENEKLISGKRQ VAGKLKKDTYIENEKLISGKRQELVTKIDH K D T E K L 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 8 0 1010.4557 P04843 P04843 580 587 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.064814 76.774 By MS/MS 3 0 1 1 6282800 0 0 6282800 2262 419 2362 9591 7856 7856 0 0 0 1218600 DVAEEIANYRPTLDTLHEQASALPQEHAESPDVR GHDEYSTQSLVKKHKDVAEEIANYRPTLDT ASALPQEHAESPDVRGRLSGIEERYKEVAE K D V V R G 5 2 1 3 0 2 5 0 2 1 3 0 0 0 3 2 2 0 1 2 0 0 34 1 3800.8242 Q01082 Q01082 788 821 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 5 3.3545E-16 68.907 By MS/MS 1 0 1 1 19894000 0 0 19894000 2263 1128 2363 9592 7857 7857 1 0 0 4286400 DVAEQLEK YEIIIIDDGSPDGTRDVAEQLEKIYGSDRI GSPDGTRDVAEQLEKIYGSDRILLRPREKK R D V E K I 1 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 930.46583 O60762 O60762 73 80 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 0.016826 86.794 By MS/MS 6.5 0.5 1 1 2 26067000 0 0 26067000 2264 231 2364 9593;9594 7858;7859 7859 2 0 0 4438000 DVAEVDTVRR RELYQQLQRGERSVRDVAEVDTVRRALRGA ERSVRDVAEVDTVRRALRGANVIAGVWLEE R D V R R A 1 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 10 1 1158.5993 Q15149 Q15149 3146 3155 PLEC Plectin yes yes 2 1.0361E-11 174.02 By MS/MS By MS/MS 1 0 2 1 1 12782000 0 7422000 5360100 2265 1348 2365 9595;9596 7860;7861 7861 2 0 3627800 1154900 DVAWAPSIGLPTSTIASCSQDGR WKEEQKLEAHSDWVRDVAWAPSIGLPTSTI GLPTSTIASCSQDGRVFIWTCDDASSNTWS R D V G R V 3 1 0 2 1 1 0 2 0 2 1 0 0 0 2 4 2 1 0 1 0 0 23 0 2388.138 P55735 P55735 217 239 SEC13 Protein SEC13 homolog yes yes 2 4.5981E-20 132.84 By MS/MS 6 0 1 1 4370400 0 0 4370400 2266 942 2366 9597 7862 7862 1 0 0 653860 DVDAAYLNKVELEAK NKRTAAENDFVVLKKDVDAAYLNKVELEAK DVDAAYLNKVELEAKVDSLNDEINFLKVLY K D V A K V 3 0 1 2 0 0 2 0 0 0 2 2 0 0 0 0 0 0 1 2 0 0 15 1 1676.8621 CON__P19013;P19013 CON__P19013 321 335 KRT4 Keratin, type II cytoskeletal 4 yes no 2 0.0036433 140.16 By MS/MS 1 0 1 1 5707000 5707000 0 0 + 2267 61 2367 9598 7863 7863 1 5707000 0 0 DVDAAYMNK NKRTAAENEFVTLKKDVDAAYMNKVELQAK FVTLKKDVDAAYMNKVELQAKADTLTDEIN K D V N K V 2 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1025.4488 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668;CON__P50446 CON__P48668 273 281 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 3.4046E-07 157.21 By MS/MS By MS/MS 5.67 2.84 1 1 1 2 1 1 1 1 2 1 9 3 365880000 323360000 0 42520000 + 2268 68;37;47;58;69 2368 9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610 7864;7865;7866;7867;7868;7869;7870;7871;7872 7864 9 310360000 0 26171000 DVDAAYMNKVELEAK NKRTTAENEFVMLKKDVDAAYMNKVELEAK DVDAAYMNKVELEAKVDALMDEINFMKMFF K D V A K V 3 0 1 2 0 0 2 0 0 0 1 2 1 0 0 0 0 0 1 2 0 0 15 1 1694.8185 CON__P13647;P13647 CON__P13647 278 292 KRT5 Keratin, type II cytoskeletal 5 no no 2;3 9.5081E-25 204.85 By MS/MS By matching 5.92 2.98 2 1 1 1 1 1 2 2 1 11 1 80249000 75969000 4279300 0 + 2269 58 2369 9611;9612;9613;9614;9615;9616;9617;9618;9619;9620;9621;9622 7873;7874;7875;7876;7877 7877 5 68471000 2091700 0 DVDAAYMNKVELQAK NKRTAAENEFVTLKKDVDAAYMNKVELQAK DVDAAYMNKVELQAKADTLTDEINFLRALY K D V A K A 3 0 1 2 0 1 1 0 0 0 1 2 1 0 0 0 0 0 1 2 0 0 15 1 1693.8345 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 273 287 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 0.00015501 153.75 By MS/MS 6.29 3.45 2 1 2 1 1 7 40576000 40576000 0 0 + 2270 68;37;47;69 2370 9623;9624;9625;9626;9627;9628;9629 7878;7879;7880;7881 7879 4 37404000 0 0 DVDDDGEEKELMER QQKKKRDTRKGRRKKDVDDDGEEKELMERL KDVDDDGEEKELMERLKKLSVPTSDEEDEV K D V E R L 0 1 0 4 0 0 4 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 14 1 1678.6992 Q8NE71 Q8NE71 87 100 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 3 0.067874 48.177 By MS/MS 2 0 1 1 0 0 0 0 2271 1638 2371 9630 7882 7882 1 0 0 0 DVDEAYMNK NKRTEMENEFVLIKKDVDEAYMNKVELESR FVLIKKDVDEAYMNKVELESRLEGLTDEIN K D V N K V 1 0 1 2 0 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1083.4543 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 199 207 KRT8 Keratin, type II cytoskeletal 8 yes no 2 2.9021E-07 158.2 By MS/MS By MS/MS 4 2 1 1 1 1 1 1 1 3 4 437980000 0 15090000 422890000 + 2272 49 2372 9631;9632;9633;9634;9635;9636;9637 7883;7884;7885;7886 7885 4 0 4490500 70991000 DVDEAYMNKVELESR NKRTEMENEFVLIKKDVDEAYMNKVELESR DVDEAYMNKVELESRLEGLTDEINFLRQLY K D V S R L 1 1 1 2 0 0 3 0 0 0 1 1 1 0 0 1 0 0 1 2 0 0 15 1 1796.8251 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 199 213 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.3861E-88 253.76 By MS/MS By MS/MS 3.9 1.45 1 1 1 3 3 1 3 7 175430000 0 14320000 161110000 + 2273 49 2373 9638;9639;9640;9641;9642;9643;9644;9645;9646;9647 7887;7888;7889;7890;7891;7892 7891 6 0 4124000 26406000 DVDEIEAWISEK RSKLGESQTLQQFSRDVDEIEAWISEKLQT FSRDVDEIEAWISEKLQTASDESYKDPTNI R D V E K L 1 0 0 2 0 0 3 0 0 2 0 1 0 0 0 1 0 1 0 1 0 0 12 0 1432.6722 Q13813 Q13813 1559 1570 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0011728 116.23 By MS/MS By MS/MS 1 0 2 1 1 14765000 0 1928100 12836000 2274 1268 2374 9648;9649 7893;7894 7893 2 0 942440 2765800 DVDETISWIK QGKLFGAAEVQRFNRDVDETISWIKEKEQL QRFNRDVDETISWIKEKEQLMASDDFGRDL R D V I K E 0 0 0 2 0 0 1 0 0 2 0 1 0 0 0 1 1 1 0 1 0 0 10 0 1204.5976 Q13813 Q13813 263 272 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0041356 99.802 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 15719000 0 0 15719000 2275 1268 2375 9650;9651;9652 7895;7896;7897 7896 3 0 0 3386900 DVDGAYMTK NKRTNAENEFVTIKKDVDGAYMTKVDLQAK FVTIKKDVDGAYMTKVDLQAKLDNLQQEID K D V T K V 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 0 9 0 998.4379 P04264;CON__P04264 P04264 290 298 KRT1 Keratin, type II cytoskeletal 1 yes no 2 0.0029814 102.95 By MS/MS By MS/MS By MS/MS 5.15 2.92 5 5 5 2 5 4 4 3 3 4 27 5 8 9653500000 8275100000 96298000 1282200000 + 2276 413 2376;2377 9653;9654;9655;9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670;9671;9672;9673;9674;9675;9676;9677;9678;9679;9680;9681;9682;9683;9684;9685;9686;9687;9688;9689;9690;9691;9692 7898;7899;7900;7901;7902;7903;7904;7905;7906;7907;7908;7909;7910;7911;7912;7913;7914;7915;7916;7917;7918;7919;7920;7921;7922;7923;7924;7925 7900 136 28 8617700000 41019000 394250000 DVDGAYMTKVDLQAK NKRTNAENEFVTIKKDVDGAYMTKVDLQAK DVDGAYMTKVDLQAKLDNLQQEIDFLTALY K D V A K L 2 0 0 3 0 1 0 1 0 0 1 2 1 0 0 0 1 0 1 2 0 0 15 1 1652.808 P04264;CON__P04264 P04264 290 304 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0.00059624 150.69 By MS/MS By matching 4.4 3.77 2 1 2 4 1 23423000 19995000 0 3428000 + 2277 413 2378 9693;9694;9695;9696;9697 7926;7927;7928;7929 7929 4 15331000 0 774660 DVDIIDHHDNTYTVK LDVQFSGLTKGDAVRDVDIIDHHDNTYTVK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY R D V V K Y 0 0 1 4 0 0 0 0 2 2 0 1 0 0 0 0 2 0 1 2 0 0 15 0 1783.8377 P21333 P21333 922 936 FLNA Filamin-A yes yes 2;3 0.00035378 135.08 By MS/MS By MS/MS 1 0 3 1 2 70562000 0 18799000 51762000 2278 623 2379 9698;9699;9700 7930;7931;7932 7932 3 0 9188900 11153000 DVDLTLPGWGEWGGVGLKPSAK FLKEKREAVEASKPKDVDLTLPGWGEWGGV GWGEWGGVGLKPSAKKRRRFLIKAPEGPPR K D V A K K 1 0 0 2 0 0 1 5 0 0 3 2 0 0 2 1 1 2 0 2 0 0 22 1 2281.1743 Q9BVJ6;Q5TAP6 Q9BVJ6 623 644 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 4.0569E-07 85.518 By MS/MS 1.5 0.5 1 1 2 13572000 0 0 13572000 2279 1915 2380 9701;9702 7933 7933 1 0 0 3051500 DVDNAYMIK NKRTAAENDFVTLKKDVDNAYMIKVELQSK FVTLKKDVDNAYMIKVELQSKVDLLNQEIE K D V I K V 1 0 1 2 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 9 0 1067.4957 CON__P35908;CON__P35908v2;P35908 CON__P35908 294 302 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00045636 123.69 By MS/MS By MS/MS By MS/MS 5.88 3.38 4 2 2 1 2 2 3 3 5 15 2 7 4709100000 4182700000 43516000 482920000 + 2280 65;66 2381;2382 9703;9704;9705;9706;9707;9708;9709;9710;9711;9712;9713;9714;9715;9716;9717;9718;9719;9720;9721;9722;9723;9724;9725;9726 7934;7935;7936;7937;7938;7939;7940;7941;7942;7943;7944;7945;7946;7947;7948;7949;7950;7951;7952;7953;7954;7955;7956;7957 7941 50 24 3943000000 43947000 479270000 DVDSEISDLENEVENK RYYSSENTRPKFLSRDVDSEISDLENEVEN VDSEISDLENEVENKTAQILNLQQHLSALE R D V N K T 0 0 2 3 0 0 4 0 0 1 1 1 0 0 0 2 0 0 0 2 0 0 16 0 1833.8116 Q96SB8 Q96SB8 663 678 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2 3.5458E-05 123.95 By MS/MS 2 0 1 1 5149900 0 0 5149900 2281 1833 2383 9727 7958 7958 1 0 0 1163800 DVEDEETWIR KQKLADSLRLQQLFRDVEDEETWIREKEPI QQLFRDVEDEETWIREKEPIAASTNRGKDL R D V I R E 0 1 0 2 0 0 3 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 10 0 1290.5728 Q13813 Q13813 792 801 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 8.1537E-14 161.02 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 21941000 0 0 21941000 2282 1268 2384 9728;9729;9730 7959;7960 7959 2 0 0 4774600 DVEDEILWVGER KHNLLASKEIHQFNRDVEDEILWVGERMPL FNRDVEDEILWVGERMPLATSTDHGHNLQT R D V E R M 0 1 0 2 0 0 3 1 0 1 1 0 0 0 0 0 0 1 0 2 0 0 12 0 1458.6991 Q01082 Q01082 1493 1504 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 8.1296E-26 204.5 By MS/MS By MS/MS 1 0 2 1 1 26880000 0 2369300 24511000 2283 1128 2385 9731;9732 7961;7962 7962 2 0 1158100 5281200 DVEDMFSR ANLYISGLPRTMTQKDVEDMFSRFGRIINS PRTMTQKDVEDMFSRFGRIINSRVLVDQTT K D V S R F 0 1 0 2 0 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 8 0 997.4175 Q15717 Q15717 121 128 ELAVL1 ELAV-like protein 1 yes yes 2 0.00069373 126.28 By matching By MS/MS By MS/MS 6 0.632 1 3 1 1 1 3 53508000 1842700 10392000 41273000 2284 1380 2386 9733;9734;9735;9736;9737 7963;7964;7965 7963 3 2453500 3597400 6157400 DVEEEKFPTQLSR PGMTIDLFRGKAAVKDVEEEKFPTQLSRHI VKDVEEEKFPTQLSRHIKFGQKSHVECARF K D V S R H 0 1 0 1 0 1 3 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 13 1 1576.7733 Q2TAY7 Q2TAY7 195 207 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 1.399E-23 196.48 By MS/MS 4 0 1 1 30295000 0 0 30295000 2285 1407 2387 9738 7966 7966 1 0 0 4948100 DVESYIHR DIPEVDLVIQSSPPKDVESYIHRSGRTGRA IQSSPPKDVESYIHRSGRTGRAGRTGVCIC K D V H R S 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 8 0 1017.488 Q9NR30 Q9NR30 517 524 DDX21 Nucleolar RNA helicase 2 yes yes 2 9.6386E-09 164.53 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 46051000 0 17250000 28801000 2286 2038 2388 9739;9740;9741;9742 7967;7968;7969;7970 7967 4 0 7596000 5893100 DVFGSNSNPYMGTR MRTEEDKKKVIAVFKDVFGSNSNPYMGTRL KDVFGSNSNPYMGTRLFRITPYDVQLGYSV K D V T R L 0 1 2 1 0 0 0 2 0 0 0 0 1 1 1 2 1 0 1 1 0 0 14 0 1543.6725 Q9NU22 Q9NU22 1996 2009 MDN1 Midasin yes yes 2 0.0001136 155 By MS/MS 1 0 1 1 2683300 0 2683300 0 2287 2056 2389 9743 7971 7971 1 0 1311600 0 DVFISAAER EHVPLSLDRAMRLVKDVFISAAERDVYTGD AMRLVKDVFISAAERDVYTGDALRICIVTK K D V E R D 2 1 0 1 0 0 1 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1006.5084 P20618 P20618 205 213 PSMB1 Proteasome subunit beta type-1 yes yes 2 0.0015615 107.66 By matching By MS/MS 7 0 2 1 1 5863400 712750 0 5150600 2288 617 2390 9744;9745 7972 7972 1 1536100 0 913950 DVFLGMFLYEYAR FVESKDVCKNYAEAKDVFLGMFLYEYARRH AKDVFLGMFLYEYARRHPDYSVVLLLRLAK K D V A R R 1 1 0 1 0 0 1 1 0 0 2 0 1 2 0 0 0 0 2 1 0 0 13 0 1622.7803 CON__P02768-1;P02768 CON__P02768-1 348 360 ALB Serum albumin yes no 2 0.018761 81.017 By MS/MS 9 0 1 1 1451100 1451100 0 0 + 2289 44 2391 9746 7973 7973 18 1 814520 0 0 DVFLNGSYNDYVR PRYQEVDRRFSGVRRDVFLNGSYNDYVREF RRDVFLNGSYNDYVREFHNMGPPPPWQGMP R D V V R E 0 1 2 2 0 0 0 1 0 0 1 0 0 1 0 1 0 0 2 2 0 0 13 0 1560.7209 Q96MU7 Q96MU7 582 594 YTHDC1 YTH domain-containing protein 1 yes yes 2 2.9688E-07 166.97 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 17096000 0 4154900 12941000 2290 1813 2392 9747;9748;9749 7974;7975 7974 2 0 1871000 2736000 DVFQLKDLEK EEKRTRMMEIFSETKDVFQLKDLEKIAPKE FSETKDVFQLKDLEKIAPKEKGITAMSVKE K D V E K I 0 0 0 2 0 1 1 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 10 1 1233.6605 Q9BWT6 Q9BWT6 25 34 MND1 Meiotic nuclear division protein 1 homolog yes yes 3 0.005713 80.24 By MS/MS 8.5 0.5 1 1 2 17514000 0 0 17514000 2291 1927 2393 9750;9751 7976;7977 7976 2 0 0 4359800 DVFRDPALKR RYSVDIPLDKTVVNKDVFRDPALKRKARRE TVVNKDVFRDPALKRKARREAKVKFEERYK K D V K R K 1 2 0 2 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 1 0 0 10 2 1215.6724 P61353 P61353 99 108 RPL27 60S ribosomal protein L27 yes yes 3 7.1418E-05 141.1 By MS/MS By MS/MS 7.8 0.748 2 2 1 2 3 98353000 0 42313000 56040000 2292 993 2394 9752;9753;9754;9755;9756 7978;7979;7980 7980 3 0 21540000 9504400 DVGSLASVQR QDLYERLEHGQATAKDVGSLASVQRYLQGT QATAKDVGSLASVQRYLQGTGCIAGLLLPG K D V Q R Y 1 1 0 1 0 1 0 1 0 0 1 0 0 0 0 2 0 0 0 2 0 0 10 0 1030.5407 P58107 P58107 595 604 EPPK1 Epiplakin yes yes 2 0.055769 82.645 By matching By MS/MS 1.33 0.471 2 1 1 2 48160000 34183000 13977000 0 2293 958 2395 9757;9758;9759 7981 7981 0 34183000 6762500 0 DVHNIYGLYVHMATADGLR TMLKDAQHYGGWEHRDVHNIYGLYVHMATA IYGLYVHMATADGLRQRSGGMERPFVLARA R D V L R Q 2 1 1 2 0 0 0 2 2 1 2 0 1 0 0 0 1 0 2 2 0 0 19 0 2144.0473 Q14697 Q14697 570 588 GANAB Neutral alpha-glucosidase AB yes yes 4 0.0011101 65.097 By MS/MS 2 0 1 1 2322200 0 0 2322200 2294 1317 2396 9760 7982 7982 1 0 0 524770 DVHTLLDR DHLERVLEAAAQAARDVHTLLDRVVRQHVR AAAQAARDVHTLLDRVVRQHVREASILLGD R D V D R V 0 1 0 2 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 967.50869 Q9NPD3 Q9NPD3 223 230 EXOSC4 Exosome complex component RRP41 yes yes 2 0.0022767 109.01 By MS/MS By MS/MS 7 0 2 1 1 17611000 0 3889400 13722000 2295 2025 2397 9761;9762 7983;7984 7984 2 0 2233300 2434900 DVIAQSQSGTGK SAIQQRAIKQIIKGRDVIAQSQSGTGKTAT KGRDVIAQSQSGTGKTATFSISVLQCLDIQ R D V G K T 1 0 0 1 0 2 0 2 0 1 0 1 0 0 0 2 1 0 0 1 0 0 12 0 1189.5939 P38919 P38919 77 88 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.00018854 132.78 By MS/MS 5 0 1 1 1574100 0 1574100 0 2296 775 2398 9763 7985 7985 1 0 405750 0 DVIDEPIIEEPSR PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ QRDVIDEPIIEEPSRLQESVMEASRTNIDE R D V S R L 0 1 0 2 0 0 3 0 0 3 0 0 0 0 2 1 0 0 0 1 0 0 13 0 1510.7515 O60216 O60216 438 450 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 9.0921E-08 172.27 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 64329000 0 4381900 59947000 2297 219 2399 9764;9765;9766;9767;9768 7986;7987;7988;7989;7990 7989 5 0 1973200 12123000 DVIEEYFK SCVVVKDYGKESQAKDVIEEYFKCKK____ GKESQAKDVIEEYFKCKK____________ K D V F K C 0 0 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 1041.5019 P25398 P25398 122 129 RPS12 40S ribosomal protein S12 yes yes 2 0.014073 88.942 By MS/MS By MS/MS 8.67 0.471 1 2 1 2 103430000 5798300 0 97632000 2298 657 2400 9769;9770;9771 7991;7992;7993 7992 3 3254600 0 26783000 DVIGFNMAGLDYLK EKLRETTISKVSQVRDVIGFNMAGLDYLKR RDVIGFNMAGLDYLKRECEAKSEVMFFADA R D V L K R 1 0 1 2 0 0 0 2 0 1 2 1 1 1 0 0 0 0 1 1 0 0 14 0 1554.7752 Q9UNX4 Q9UNX4 893 906 WDR3 WD repeat-containing protein 3 yes yes 2 0.010932 79.693 By MS/MS 1.5 0.5 1 1 2 4028700 0 0 4028700 2299 2212 2401 9772;9773 7994 7994 1 0 0 872010 DVIGFNMAGLDYLKR EKLRETTISKVSQVRDVIGFNMAGLDYLKR DVIGFNMAGLDYLKRECEAKSEVMFFADAT R D V K R E 1 1 1 2 0 0 0 2 0 1 2 1 1 1 0 0 0 0 1 1 0 0 15 1 1710.8763 Q9UNX4 Q9UNX4 893 907 WDR3 WD repeat-containing protein 3 yes yes 3 0.0013011 78.505 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 8172300 0 3929900 4242500 2300 2212 2402 9774;9775;9776 7995;7996 7995 2 0 1769700 929850 DVIGIAHHPHQNLIATYSEDGLLK TVTGKLERTLTVHEKDVIGIAHHPHQNLIA HQNLIATYSEDGLLKLWKP___________ K D V L K L 2 0 1 2 0 1 1 2 3 3 3 1 0 0 1 1 1 0 1 1 0 0 24 0 2640.366 Q2TAY7 Q2TAY7 486 509 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 3;4 1.3146E-12 108.64 By MS/MS 4 0 2 2 62314000 0 0 62314000 2301 1407 2403 9777;9778 7997;7998 7997 2 0 0 10178000 DVKPDNFLMGLGK ISRIEYIHSKNFIHRDVKPDNFLMGLGKKG HRDVKPDNFLMGLGKKGNLVYIIDFGLAKK R D V G K K 0 0 1 2 0 0 0 2 0 0 2 2 1 1 1 0 0 0 0 1 0 0 13 1 1432.7384 P48730;P49674 P48730 128 140 CSNK1D;CSNK1E Casein kinase I isoform delta;Casein kinase I isoform epsilon yes no 3 0.014073 66.393 By MS/MS 5.5 0.5 1 1 2 4921100 0 0 4921100 2302 848 2404 9779;9780 7999 7999 1 0 0 696140 DVKPHNVMIDHEHR LKALDYCHSMGIMHRDVKPHNVMIDHEHRK RDVKPHNVMIDHEHRKLRLIDWGLAEFYHP R D V H R K 0 1 1 2 0 0 1 0 3 1 0 1 1 0 1 0 0 0 0 2 0 0 14 1 1725.8369 P68400;Q8NEV1 P68400 156 169 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3;4 0.00015504 112.42 By MS/MS 4.67 0.471 1 2 3 11580000 0 0 11580000 2303 1080 2405 9781;9782;9783 8000;8001 8000 2 0 0 1629500 DVKPHNVMIDHEHRK LKALDYCHSMGIMHRDVKPHNVMIDHEHRK DVKPHNVMIDHEHRKLRLIDWGLAEFYHPG R D V R K L 0 1 1 2 0 0 1 0 3 1 0 2 1 0 1 0 0 0 0 2 0 0 15 2 1853.9319 P68400;Q8NEV1 P68400 156 170 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 4 0.0097018 62.646 By MS/MS 5 0.816 1 1 1 3 9608300 0 0 9608300 2304 1080 2406 9784;9785;9786 8002 8002 1 0 0 1349500 DVKPHNVMIDHQQK LKALDYCHSKGIMHRDVKPHNVMIDHQQKK RDVKPHNVMIDHQQKKLRLIDWGLAEFYHP R D V Q K K 0 0 1 2 0 2 0 0 2 1 0 2 1 0 1 0 0 0 0 2 0 0 14 1 1687.8464 P19784 P19784 157 170 CSNK2A2 Casein kinase II subunit alpha yes yes 4 0.053076 41.092 By MS/MS 5 0.816 1 1 1 3 4791700 0 0 4791700 2305 612 2407 9787;9788;9789 8003 8003 1 0 0 680670 DVLEQIQQFLATQLIMQTSESGISAK SSDHDVYHMAVEMQRDVLEQIQQFLATQLI TQLIMQTSESGISAKSLRGRDSTRKQDASE R D V A K S 2 0 0 1 0 5 2 1 0 3 3 1 1 1 0 3 2 0 0 1 0 0 26 0 2877.4794 Q9H0E9 Q9H0E9 803 828 BRD8 Bromodomain-containing protein 8 yes yes 3 0.003051 39.153 By MS/MS 2 0 1 1 374720 0 0 374720 2306 1962 2408 9790 8004 8004 1 0 0 84679 DVLIQGLIDENPGLQLIIR SETDNDSQEIFKLAKDVLIQGLIDENPGLQ QGLIDENPGLQLIIRNFWSHETRLPSNTLD K D V I R N 0 1 1 2 0 2 1 2 0 4 4 0 0 0 1 0 0 0 0 1 0 0 19 0 2118.2049 P78527 P78527 2504 2522 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.0715E-10 162.32 By MS/MS 1 0 2 2 9276400 0 0 9276400 2307 1089 2409 9791;9792 8005;8006 8005 2 0 0 1998700 DVLLPGEWDVCVTSYEMLIK VCLIGDKEQRAAFVRDVLLPGEWDVCVTSY GEWDVCVTSYEMLIKEKSVFKKFNWRYLVI R D V I K E 0 0 0 2 1 0 2 1 0 1 3 1 1 0 1 1 1 1 1 3 0 0 20 0 2366.1538 O60264 O60264 273 292 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.036864 47.189 By MS/MS 2 0 1 1 2094300 0 0 2094300 2308 223 2410 9793 8007 8007 1 0 0 473260 DVLLQVDDERR QAACKQVRRTEKKLKDVLLQVDDERRNAEQ KKLKDVLLQVDDERRNAEQYKDQADKASTR K D V R R N 0 2 0 3 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 11 1 1356.6997 P35579 P35579 1846 1856 MYH9 Myosin-9 yes yes 2;3 3.659E-19 192.12 By MS/MS By MS/MS 1 0 2 1 1 43628000 0 30554000 13074000 2309 752 2411 9794;9795 8008;8009 8008 2 0 14934000 2816900 DVLLVAQGEMALEEFLK QIWDVDLQKNEAIVKDVLLVAQGEMALEEF LLVAQGEMALEEFLKQIREVWNTYELDLVN K D V L K Q 2 0 0 1 0 1 3 1 0 0 4 1 1 1 0 0 0 0 0 2 0 0 17 0 1903.9965 Q14204 Q14204 1448 1464 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.043879 54.7 By MS/MS 1 0 1 1 838810 0 0 838810 2310 1292 2412 9796 8010 8010 1 0 0 180730 DVLSNAHIQNELER NERALRRTLQEDLVKDVLSNAHIQNELERE KDVLSNAHIQNELEREFERMREDREVLRVI K D V E R E 1 1 2 1 0 1 2 0 1 1 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1636.8169 P24928 P24928 941 954 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 1.2512E-05 95.346 By MS/MS 1 0 1 1 0 0 0 0 2311 653 2413 9797 8011 8011 1 0 0 0 DVLSVAFSSDNR LTTGTTTRRFVGHTKDVLSVAFSSDNRQIV HTKDVLSVAFSSDNRQIVSGSRDKTIKLWN K D V N R Q 1 1 1 2 0 0 0 0 0 0 1 0 0 1 0 3 0 0 0 2 0 0 12 0 1308.631 P63244 P63244 107 118 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 8.7317E-108 269.99 By matching By MS/MS By MS/MS 6 0 3 1 1 1 48106000 3252300 14637000 30216000 2312 1068 2414 9798;9799;9800 8012;8013 8013 2 4330500 5066900 4520700 DVLTIIEKPTGSK SVQGATYEEVSQMVKDVLTIIEKPTGSKQP VKDVLTIIEKPTGSKQPAGCLENQVSAFLE K D V S K Q 0 0 0 1 0 0 1 1 0 2 1 2 0 0 1 1 2 0 0 1 0 0 13 1 1399.7922 CON__Q3SZ57 CON__Q3SZ57 69 81 yes yes 2;3 0.0076305 114.86 By MS/MS By matching 7.67 3.3 1 2 2 1 4072200 0 3462400 609710 + 2313 83 2415 9801;9802;9803 8014;8015 8014 2 0 7820100 1333500 DVLVATDVASK EERTKAIEAFREGKKDVLVATDVASKGLDF EGKKDVLVATDVASKGLDFPAIQHVINYDM K D V S K G 2 0 0 2 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 3 0 0 11 0 1116.6027 Q9UJV9 Q9UJV9 484 494 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.021273 83.499 By MS/MS 3 0 1 1 11419000 0 0 11419000 2314 2171 2416 9804 8016 8016 1 0 0 2214700 DVMEGVTVDDHMMK QQTNNQTEVVKIIEKDVMEGVTVDDHMMKV KDVMEGVTVDDHMMKVETVHCSACSVYIPA K D V M K V 0 0 0 3 0 0 1 1 1 0 0 1 3 0 0 0 1 0 0 3 0 0 14 0 1605.6837 Q5BKZ1 Q5BKZ1 388 401 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.0019482 103.08 By MS/MS 3 0 1 1 4273000 0 0 4273000 2315 1434 2417 9805 8017 8017 1 0 0 828760 DVMQQQLAEYQELLDVK RKMLDAKEQEMTEMRDVMQQQLAEYQELLD MQQQLAEYQELLDVKLALDMEINAYRKLLE R D V V K L 1 0 0 2 0 4 2 0 0 0 3 1 1 0 0 0 0 0 1 2 0 0 17 0 2049.0089 Q03252 Q03252 365 381 LMNB2 Lamin-B2 yes yes 2;3 7.5541E-06 129.54 By MS/MS By MS/MS 3 0.632 1 3 1 2 3 46156000 0 2935700 43221000 2316 1156 2418 9806;9807;9808;9809;9810 8018;8019;8020;8021 8019 4 0 1281800 8172500 DVNAAIATIK YMACCLLYRGDVVPKDVNAAIATIKTKRSI DVVPKDVNAAIATIKTKRSIQFVDWCPTGF K D V I K T 3 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 1 0 0 10 0 1014.571 P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 327 336 TUBA1B;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2 0.00027892 123.35 By matching By MS/MS By MS/MS 5.43 2.66 3 1 3 4 4 3 3 2 3 2 9 11 8 3038600000 63657000 1391400000 1583500000 2317 1077;1515;1883 2419 9811;9812;9813;9814;9815;9816;9817;9818;9819;9820;9821;9822;9823;9824;9825;9826;9827;9828;9829;9830;9831;9832;9833;9834;9835;9836;9837;9838 8022;8023;8024;8025;8026;8027;8028;8029;8030;8031;8032;8033;8034;8035;8036;8037;8038;8039;8040;8041 8037 19 60900000 549400000 342340000 DVNALPETLSDALR SYMEEFPFPYYIILRDVNALPETLSDALRQ RDVNALPETLSDALRQWFELVTASDHP___ R D V L R Q 2 1 1 2 0 0 1 0 0 0 3 0 0 0 1 1 1 0 0 1 0 0 14 0 1512.7784 Q9NU22 Q9NU22 5571 5584 MDN1 Midasin yes yes 2 0.021325 73.781 By MS/MS 1 0 1 1 1032700 0 1032700 0 2318 2056 2420 9839 8042 8042 1 0 504790 0 DVNFEFPEFQL KVETFSGVYKKLTGKDVNFEFPEFQL____ LTGKDVNFEFPEFQL_______________ K D V Q L - 0 0 1 1 0 1 2 0 0 0 1 0 0 3 1 0 0 0 0 1 0 0 11 0 1383.6347 P62081 P62081 184 194 RPS7 40S ribosomal protein S7 yes yes 2 0.0063987 98.233 By MS/MS 1.5 0.5 1 1 2 3423900 0 0 3423900 2319 1005 2421 9840;9841 8043 8043 1 0 0 745080 DVNQQEFVR ______________________________ PGVTVKDVNQQEFVRALAAFLKKSGKLKVP K D V V R A 0 1 1 1 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 9 0 1133.5465 P39019 P39019 8 16 RPS19 40S ribosomal protein S19 yes yes 2 4.6148E-05 148.38 By MS/MS By MS/MS 8 1.41 1 2 2 2 4 3 146090000 0 86456000 59638000 2320 777 2422 9842;9843;9844;9845;9846;9847;9848 8044;8045;8046;8047 8046 4 0 57975000 28960000 DVNTDFLLILLK LEGVSHVIVDEVHERDVNTDFLLILLKGLQ HERDVNTDFLLILLKGLQRLNPALRLVLMS R D V L K G 0 0 1 2 0 0 0 0 0 1 4 1 0 1 0 0 1 0 0 1 0 0 12 0 1402.8072 Q7L2E3 Q7L2E3 565 576 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.0025389 108.67 By MS/MS 1.5 0.5 1 1 2 18260000 0 0 18260000 2321 1522 2423 9849;9850 8048;8049 8049 2 0 0 4102700 DVPAYSQDTFK NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE GPFRDVPAYSQDTFKVHYENNSPFLTITSM R D V F K V 1 0 0 2 0 1 0 0 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1269.5877 P04843 P04843 205 215 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.00092406 115.13 By MS/MS By MS/MS 3 0 2 1 1 18875000 0 4192700 14682000 2322 419 2424 9851;9852 8050;8051 8051 2 0 1787300 2847600 DVPLLPSDVK GRWLLWPMLFPVAPRDVPLLPSDVKLKLYD PVAPRDVPLLPSDVKLKLYDRSLESNPEQL R D V V K L 0 0 0 2 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 2 0 0 10 0 1081.6019 Q9HCE1 Q9HCE1 480 489 MOV10 Putative helicase MOV-10 yes yes 2 0.026848 79.128 By MS/MS 2 0 1 1 8570700 0 8570700 0 2323 2011 2425 9853 8052 8052 1 0 3859500 0 DVPLPVVR KLWTMPISSVRFVPRDVPLPVVRVASVFAN SVRFVPRDVPLPVVRVASVFANADKGDDEK R D V V R V 0 1 0 1 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 3 0 0 8 0 893.53345 Q86U86 Q86U86 1089 1096 PBRM1 Protein polybromo-1 yes yes 2 0.057342 71.141 By MS/MS 1 0 1 1 2737000 0 2737000 0 2324 1545 2426 9854 8053 8053 1 0 1337800 0 DVPNETLQVEEDDRPELPWWK NLTEWIEILKTVVNRDVPNETLQVEEDDRP LQVEEDDRPELPWWKCKKWALHILARLFER R D V W K C 0 1 1 3 0 1 4 0 0 0 2 1 0 0 3 0 1 2 0 2 0 0 21 1 2594.2289 O95373 O95373 239 259 IPO7 Importin-7 yes yes 3 1.2394E-06 95.5 By MS/MS 2 0 1 1 4575900 0 0 4575900 2325 322 2427 9855 8054 8054 1 0 0 1034100 DVPPLSETEATPVPIKDMEIAQTQK KDGVLTLANNVTPAKDVPPLSETEATPVPI TPVPIKDMEIAQTQKGISEDSHLESLQDVG K D V Q K G 2 0 0 2 0 2 3 0 0 2 1 2 1 0 4 1 3 0 0 2 0 0 25 1 2736.3892 P27816 P27816 575 599 MAP4 Microtubule-associated protein 4 yes yes 3 0.0004224 54.658 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 17707000 0 4242900 13464000 2326 683 2428 9856;9857 8055;8056 8055 2 0 1910600 2901000 DVPVAEEVSALFAGELNPVAPK CILQLVKHIQKLQAKDVPVAEEVSALFAGE VSALFAGELNPVAPKAQKKVPVPEGLDLDA K D V P K A 4 0 1 1 0 0 3 1 0 0 2 1 0 1 3 1 0 0 0 4 0 0 22 0 2251.1736 O14617 O14617 589 610 AP3D1 AP-3 complex subunit delta-1 yes yes 3 0.0066745 44.106 By MS/MS 2 0.816 1 1 1 3 12705000 0 0 12705000 2327 139 2429 9858;9859;9860 8057;8058 8058 2 0 0 2717200 DVQDSLTVSNEAQTAK VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA VQDSLTVSNEAQTAKEFIKIIENAENEYQT K D V A K E 2 0 1 2 0 2 1 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 16 0 1704.8166 P52907 P52907 211 226 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2 5.1807E-36 214.81 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 28035000 0 9562000 18473000 2328 914 2430 9861;9862;9863 8059;8060 8059 2 0 3310000 2879000 DVQEIFR LDECDKMLEQLDMRRDVQEIFRMTPHEKQV LEQLDMRRDVQEIFRMTPHEKQVMMFSATL R D V F R M 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 905.46068 Q13838;O00148 Q13838 210 216 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2 0.015134 111.28 By MS/MS By MS/MS By MS/MS 4.4 0.8 1 1 3 1 1 3 72682000 9798900 7693400 55190000 2329 1271 2431 9864;9865;9866;9867;9868 8061;8062;8063;8064 8061 4 7850100 1983100 8073300 DVQIGDIVTVGECRPLSK KRHKNMSVHLSPCFRDVQIGDIVTVGECRP IGDIVTVGECRPLSKTVRFNVLKVTKAAGT R D V S K T 0 1 0 2 1 1 1 2 0 2 1 1 0 0 1 1 1 0 0 3 0 0 18 1 1985.0252 P62280 P62280 119 136 RPS11 40S ribosomal protein S11 yes yes 2;3 1.8789E-29 197.19 By matching By MS/MS 7.4 0.49 3 2 1 4 61845000 0 519770 61325000 2330 1017 2432 9869;9870;9871;9872;9873 8065;8066;8067 8066 3 0 298460 10622000 DVRPYIVGAVVR ENPVPLTVRVSPEVRDVRPYIVGAVVRGMD EVRDVRPYIVGAVVRGMDLQPGNALKRFLT R D V V R G 1 2 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 4 0 0 12 1 1342.7721 Q8N1G4 Q8N1G4 331 342 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 0.0074506 101.39 By MS/MS By MS/MS 3 0.632 1 3 1 4 1 27222000 0 21243000 5979400 2331 1600 2433 9874;9875;9876;9877;9878 8068;8069;8070 8069 3 0 8857300 1159700 DVSSVELLMNNHQGIK MEDVIRQIEAQEKPRDVSSVELLMNNHQGI VSSVELLMNNHQGIKAEIDARNDSFTTCIE R D V I K A 0 0 2 1 0 1 1 1 1 1 2 1 1 0 0 2 0 0 0 2 0 0 16 0 1782.8934 Q01082 Q01082 1942 1957 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.3964E-108 261.72 By MS/MS By MS/MS 1 0 5 3 2 82751000 0 36985000 45766000 2332 1128 2434;2435 9879;9880;9881;9882;9883 8071;8072;8073;8074;8075 8072 538 4 0 18078000 9861100 DVTEAEQAEEQAR HALTGASDSRVILWKDVTEAEQAEEQARQE WKDVTEAEQAEEQARQEEQVVRQQELDNLL K D V A R Q 3 1 0 1 0 2 4 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 13 0 1474.6536 Q12788 Q12788 634 646 TBL3 Transducin beta-like protein 3 yes yes 2 1.0662E-07 171.87 By matching By MS/MS 2.5 0.5 1 1 1 1 8699100 0 2167600 6531500 2333 1197 2436 9884;9885 8076 8076 1 0 976110 1266800 DVTGAEALLER INGIRGLVSSDELAKDVTGAEALLERHQEH ELAKDVTGAEALLERHQEHRTEIDARAGTF K D V E R H 2 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1172.6037 Q13813 Q13813 1370 1380 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00052655 119.21 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 54581000 0 27967000 26614000 2334 1268 2437 9886;9887;9888 8077;8078;8079 8079 3 0 13567000 5734400 DVTPPPETEVVLIK KDMSPLSETEMALGKDVTPPPETEVVLIKN KDVTPPPETEVVLIKNVCLPPEMEVALTED K D V I K N 0 0 0 1 0 0 2 0 0 1 1 1 0 0 3 0 2 0 0 3 0 0 14 0 1535.8447 P27816 P27816 519 532 MAP4 Microtubule-associated protein 4 yes yes 2 0.023597 72.652 By MS/MS 1.5 0.5 1 1 2 19565000 0 0 19565000 2335 683 2438 9889;9890 8080;8081 8080 2 0 0 4352000 DVTVLQNTDGNNNEAWAK FRCLAENAGDVAFVKDVTVLQNTDGNNNEA VLQNTDGNNNEAWAKDLKLADFALLCLDGK K D V A K D 2 0 4 2 0 1 1 1 0 0 1 1 0 0 0 0 2 1 0 2 0 0 18 0 1987.9235 P02788 P02788 566 583 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 1.6792E-134 274.05 By MS/MS 5.56 3.02 1 1 1 1 1 1 1 1 1 9 62658000 62658000 0 0 2336 400 2439 9891;9892;9893;9894;9895;9896;9897;9898;9899 8082;8083;8084;8085;8086;8087;8088 8087 7 56593000 0 0 DVVMEPTMK EVQEKAIEEQMVAAKDVVMEPTMKTLSDDL QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE K D V M K T 0 0 0 1 0 0 1 0 0 0 0 1 2 0 1 0 1 0 0 2 0 0 9 0 1048.4933 Q9H0A0 Q9H0A0 923 931 NAT10 N-acetyltransferase 10 yes yes 2 0.022712 80.438 By MS/MS By MS/MS 2 0 2 1 1 13502000 0 6843800 6658100 2337 1959 2440 9900;9901 8089;8090 8089 2 0 3081800 1504600 DVVQAYPEVR HERDINTDFLLVVLRDVVQAYPEVRIVLMS LVVLRDVVQAYPEVRIVLMSATIDTSMFCE R D V V R I 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 10 0 1174.5982 Q08211 Q08211 529 538 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00056254 129.38 By MS/MS By MS/MS 4.57 3.54 1 2 1 1 2 5 2 174410000 0 112090000 62326000 2338 1182 2441 9902;9903;9904;9905;9906;9907;9908 8091;8092;8093;8094 8092 4 0 55348000 20541000 DVWGIEGPIDAAFTR LDEKAVRPGYPKLIRDVWGIEGPIDAAFTR DVWGIEGPIDAAFTRVNCQGKTYLFKGSQY R D V T R V 2 1 0 2 0 0 1 2 0 2 0 0 0 1 1 0 1 1 0 1 0 0 15 0 1645.81 CON__Q3ZBS7 CON__Q3ZBS7 194 208 no no 2;3 1.8544E-26 206.36 By MS/MS By MS/MS By MS/MS 5.06 1.95 1 3 3 3 3 1 3 5 3 9 376190000 82407000 6912900 286870000 + 2339 88 2442 9909;9910;9911;9912;9913;9914;9915;9916;9917;9918;9919;9920;9921;9922;9923;9924;9925 8095;8096;8097;8098;8099;8100;8101;8102;8103;8104;8105;8106;8107;8108;8109;8110;8111;8112;8113;8114;8115;8116 8099 22 67054000 2217300 48391000 DVYLSPR SYGGPPRREPLPSRRDVYLSPRDDGYSTKD REPLPSRRDVYLSPRDDGYSTKDSYSSRDY R D V P R D 0 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 7 0 848.43922 P38159;Q96E39 P38159 204 210 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 0.011521 118.01 By MS/MS By MS/MS 5 0.707 1 2 1 2 2 87623000 0 38595000 49028000 2340 771;1772 2443 9926;9927;9928;9929 8117;8118;8119;8120 8117 4 0 11506000 7014200 DVYVQLYLQHLTAR LVANNVTLPAGEQRKDVYVQLYLQHLTARN KDVYVQLYLQHLTARNRPPLPAGTNSKGPP K D V A R N 1 1 0 1 0 2 0 0 1 0 3 0 0 0 0 0 1 0 2 2 0 0 14 0 1717.9152 P42166;P42167 P42166 35 48 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 3.933E-07 166.11 By MS/MS 4.38 1.32 1 1 2 2 2 8 67170000 0 0 67170000 2341 798;799 2444 9930;9931;9932;9933;9934;9935;9936;9937 8121;8122 8122 2 0 0 11110000 DWEAYWR QGTVDEDSPVLTQDRDWEAYWRLLFKKISL SPVLTQDRDWEAYWRLLFKKISLEDIQAFE R D W W R L 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 7 0 1024.4403 Q8WXX5 Q8WXX5 96 102 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.0027075 137.5 By MS/MS 6 0 1 1 7063900 0 0 7063900 2342 1698 2445 9938 8123 8123 1 0 0 1056800 DWEQFEYK MLLLYHSTMSSKSPRDWEQFEYKIQAELAV MSSKSPRDWEQFEYKIQAELAVILKFVLDH R D W Y K I 0 0 0 1 0 1 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 8 0 1143.4873 Q14980 Q14980 115 122 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.01344 89.55 By MS/MS 1 0 1 1 15393000 0 0 15393000 2343 1327 2446 9939 8124 8124 1 0 0 3316600 DWNIPFK CHFMPPEKVHKELFKDWNIPFKQPSYPSVK KVHKELFKDWNIPFKQPSYPSVKRYNRNRT K D W F K Q 0 0 1 1 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 7 0 918.45995 Q9BYG3 Q9BYG3 133 139 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 0.019765 102.98 By matching By MS/MS By MS/MS 6.4 0.49 3 2 1 2 2 30778000 705640 1901500 28170000 2344 1936 2447 9940;9941;9942;9943;9944 8125;8126;8127 8126 3 939570 775240 4342700 DWQSYYYHHPQDR YEYNRYRDYYRQYNRDWQSYYYHHPQDRDR NRDWQSYYYHHPQDRDRYYRNYYGYQGYR_ R D W D R D 0 1 0 2 0 2 0 0 2 0 0 0 0 0 1 1 0 1 3 0 0 0 13 0 1793.7546 Q1KMD3 Q1KMD3 721 733 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2;3;4 0.0003144 143.97 By MS/MS By MS/MS 2 0.577 1 4 1 1 5 87876000 0 8949500 78927000 2345 1404 2448 9945;9946;9947;9948;9949;9950 8128;8129;8130;8131 8130 4 0 4030100 17637000 DWQSYYYHHPQDRDR YEYNRYRDYYRQYNRDWQSYYYHHPQDRDR DWQSYYYHHPQDRDRYYRNYYGYQGYR___ R D W D R Y 0 2 0 3 0 2 0 0 2 0 0 0 0 0 1 1 0 1 3 0 0 0 15 1 2064.8827 Q1KMD3 Q1KMD3 721 735 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 4 7.3034E-05 115.8 By MS/MS 2 0 1 1 6495200 0 6495200 0 2346 1404 2449 9951 8132 8132 1 0 2924900 0 DWSHYFK SKIREHLEKKGPQVRDWSHYFKIIEDLRAQ EKKGPQVRDWSHYFKIIEDLRAQIFANTVD R D W F K I 0 0 0 1 0 0 0 0 1 0 0 1 0 1 0 1 0 1 1 0 0 0 7 0 981.43447 P05783 P05783 125 131 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 0.015491 110.61 By MS/MS By MS/MS By MS/MS 4.6 2.06 1 1 1 1 3 1 1 1 1 1 8 581090000 11610000 169180000 400300000 2347 436 2450 9952;9953;9954;9955;9956;9957;9958;9959;9960;9961 8133;8134;8135;8136 8133 4 9301000 43608000 59721000 DWVLNEFK WPAMGIHGDKSQQERDWVLNEFKHGKAPIL DKSQQERDWVLNEFKHGKAPILIATDVASR R D W F K H 0 0 1 1 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 8 0 1049.5182 P17844 P17844 381 388 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 0.0026928 107.59 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 22323000 6775900 15547000 0 2348 588 2451 9962;9963;9964 8137;8138;8139 8139 3 7817900 5498200 0 DWVLNEFR WPAMCIHGDKSQPERDWVLNEFRSGKAPIL DKSQPERDWVLNEFRSGKAPILIATDVASR R D W F R S 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 8 0 1077.5243 Q92841 Q92841 458 465 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 4.8888E-06 158.08 By MS/MS By MS/MS By MS/MS 3.4 1.56 1 2 3 2 2 1 3 6 110130000 5593600 6265100 98266000 2349 1725 2452 9965;9966;9967;9968;9969;9970;9971;9972;9973;9974 8140;8141;8142;8143;8144;8145;8146;8147 8145 8 6453700 2329400 18754000 DWYPHSR VPFSLLRGPSWDPFRDWYPHSRLFDQAFGL GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW R D W S R L 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 0 7 0 959.42496 P04792 P04792 21 27 HSPB1 Heat shock protein beta-1 yes yes 2 0.021396 100.07 By matching By MS/MS 7 0 2 1 1 9387800 0 1014000 8373900 2350 417 2453 9975;9976 8148 8148 1 0 582220 1485900 DYAFVHMEK LFERRGRVIECDVVKDYAFVHMEKEADAKA ECDVVKDYAFVHMEKEADAKAAIAQLNGKE K D Y E K E 1 0 0 1 0 0 1 0 1 0 0 1 1 1 0 0 0 0 1 1 0 0 9 0 1138.5117 Q96PK6 Q96PK6 113 121 RBM14 RNA-binding protein 14 yes yes 2 0.011786 87.639 By matching By MS/MS 3.62 2.12 2 1 1 1 1 1 1 1 7 57221000 1305500 0 55915000 2351 1818 2454 9977;9978;9979;9980;9981;9982;9983;9984 8149 8149 1 1305500 0 10485000 DYAFVHMER KFEEYGPVIECDIVKDYAFVHMERAEDAVE ECDIVKDYAFVHMERAEDAVEAIRGLDNTE K D Y E R A 1 1 0 1 0 0 1 0 1 0 0 0 1 1 0 0 0 0 1 1 0 0 9 0 1166.5179 Q9BWF3;Q9BQ04 Q9BWF3 112 120 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.00055626 126.41 By MS/MS 6 0.816 1 1 1 3 14390000 0 0 14390000 2352 1924 2455 9985;9986;9987 8150 8150 1 0 0 2147200 DYAPPPRDYTYR DSYSSRDYPSSRDTRDYAPPPRDYTYRDYG DTRDYAPPPRDYTYRDYGHSSSRDDYPSRG R D Y Y R D 1 2 0 2 0 0 0 0 0 0 0 0 0 0 3 0 1 0 3 0 0 0 12 1 1512.6997 P38159;Q96E39 P38159 233 244 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3 0.0053535 97.813 By MS/MS 5.5 0.957 1 2 2 1 6 33560000 0 33560000 0 2353 771;1772 2456 9988;9989;9990;9991;9992;9993 8151;8152;8153 8151 3 0 10925000 0 DYDALFPVAEDISLLQQASSVLDETR LQIFSSLLQEKRFLRDYDALFPVAEDISLL ISLLQQASSVLDETRTAYILQAVESAWEGV R D Y T R T 3 1 0 4 0 2 2 0 0 1 4 0 0 1 1 3 1 0 1 2 0 0 26 0 2894.4185 Q9H1I8 Q9H1I8 366 391 ASCC2 Activating signal cointegrator 1 complex subunit 2 yes yes 3 1.6595E-12 92.426 By MS/MS 2 0 1 1 1060700 0 0 1060700 2354 1969 2457 9994 8154 8154 1 0 0 239710 DYDDMSPR MPPGRGGRPMPPSRRDYDDMSPRRGPPPPP PMPPSRRDYDDMSPRRGPPPPPPGRGGRGG R D Y P R R 0 1 0 3 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 8 0 997.38111 P61978 P61978 279 286 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 0.00038082 130.77 By matching By MS/MS 3.67 1.25 1 2 2 1 1 5 102380000 0 1255400 101120000 2355 1002 2458;2459 9995;9996;9997;9998;9999;10000 8155;8156 8156 476 2 0 565310 16964000 DYDVDHPGEADSVLR SSRLIEKECLEKESRDYDVDHPGEADSVLR DYDVDHPGEADSVLRGGSQVQARGRALNIV R D Y L R G 1 1 0 4 0 0 1 1 1 0 1 0 0 0 1 1 0 0 1 2 0 0 15 0 1686.7485 Q8IX01 Q8IX01 190 204 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 2 0.00060036 105.2 By MS/MS 2 0 1 1 3517800 0 0 3517800 2356 1578 2460 10001 8157 8157 1 0 0 794960 DYDWINAER REAEDGAAKVSKMLKDYDWINAERHLFGQP VSKMLKDYDWINAERHLFGQPNSAYDFKTN K D Y E R H 1 1 1 2 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 9 0 1180.5149 O95347 O95347 937 945 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.023813 79.713 By MS/MS 2 0 1 1 4475700 0 0 4475700 2357 321 2461 10002 8158 8158 1 0 0 1011400 DYEEVGVDSVEGEGEEEGEEY GEFSEAREDMAALEKDYEEVGVDSVEGEGE VDSVEGEGEEEGEEY_______________ K D Y E Y - 0 0 0 2 0 0 9 4 0 0 0 0 0 0 0 1 0 0 2 3 0 0 21 0 2347.8976 P68363;Q71U36 P68363 431 451 TUBA1B;TUBA1A Tubulin alpha-1B chain;Tubulin alpha-1A chain no no 2 0.022213 50.207 By MS/MS 4 0 1 1 14846000 0 0 14846000 2358 1077;1515 2462 10003 8159 8159 1 0 0 2424800 DYELLCLDGTR GGKNPDPWAKNLNEKDYELLCLDGTRKPVE LNEKDYELLCLDGTRKPVEEYANCHLARAP K D Y T R K 0 1 0 2 1 0 1 1 0 0 3 0 0 0 0 0 1 0 1 0 0 0 11 0 1353.6235 P02787 P02787 577 587 TF Serotransferrin yes yes 2 8.0886E-07 153.24 By MS/MS 9 0 1 1 3233900 3233900 0 0 2359 399 2463 10004 8160 8160 1 1815200 0 0 DYELQLASYTSGLETLLNIPIKR EEVQKIAELCANSIKDYELQLASYTSGLET YTSGLETLLNIPIKRTMIQSPSGVILQEAA K D Y K R T 1 1 1 1 0 1 2 1 0 2 5 1 0 0 1 2 2 0 2 0 0 0 23 1 2636.4061 P15924 P15924 960 982 DSP Desmoplakin yes yes 3 0.069323 18.251 By MS/MS 1 0 1 1 749920 0 0 749920 2360 572 2464 10005 8161 8161 1 0 0 161580 DYETATLSDIK HEAWTDGKEAMLKHRDYETATLSDIKALIR LKHRDYETATLSDIKALIRKHEAFESDLAA R D Y I K A 1 0 0 2 0 0 1 0 0 1 1 1 0 0 0 1 2 0 1 0 0 0 11 0 1254.598 O43707 O43707 440 450 ACTN4 Alpha-actinin-4 yes yes 2 0.00032804 128.27 By MS/MS 2 0 1 1 15225000 0 15225000 0 2361 210 2465 10006 8162 8162 1 0 6856200 0 DYEVELLR KEKDAYHKKCDQKKKDYEVELLRFLESLPE KCDQKKKDYEVELLRFLESLPEEEQQRVLG K D Y L R F 0 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 8 0 1035.5237 P17480 P17480 353 360 UBTF Nucleolar transcription factor 1 yes yes 2 9.6386E-09 164.53 By MS/MS 3 0.816 1 1 1 3 25958000 0 0 25958000 2362 584 2466 10007;10008;10009 8163;8164 8164 2 0 0 5447000 DYFEEYGK FVGGIKEDTEEHHLRDYFEEYGKIDTIEII TEEHHLRDYFEEYGKIDTIEIITDRQSGKK R D Y G K I 0 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1049.4342 P22626 P22626 130 137 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 0.011508 91.906 By matching By MS/MS By MS/MS 5.29 1.48 1 1 2 2 1 1 1 5 415550000 5097200 12645000 397810000 2363 632 2467 10010;10011;10012;10013;10014;10015;10016 8165;8166;8167;8168;8169 8169 5 4083500 4377200 58355000 DYFEEYGKIDTIEIITDR FVGGIKEDTEEHHLRDYFEEYGKIDTIEII EEYGKIDTIEIITDRQSGKKRGFGFVTFDD R D Y D R Q 0 1 0 3 0 0 3 1 0 4 0 1 0 1 0 0 2 0 2 0 0 0 18 1 2219.0634 P22626 P22626 130 147 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 8.4357E-05 96.544 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 17073000 0 4480700 12593000 2364 632 2468 10017;10018;10019;10020 8170;8171;8172 8171 3 0 1551100 1791300 DYFEQYGK FVGGIKEDTEEHHLRDYFEQYGKIEVIEIM TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK R D Y G K I 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 0 8 0 1048.4502 P09651;Q32P51 P09651 123 130 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 0.010396 93.262 By MS/MS By MS/MS 5.5 2.87 2 1 1 1 2 2 1 1 1 4 8 438320000 0 58596000 379720000 2365 490 2469 10021;10022;10023;10024;10025;10026;10027;10028;10029;10030;10031;10032 8173;8174;8175;8176;8177;8178;8179;8180 8174 8 0 21822000 67055000 DYFMPCPGR PVRGEVPPRYPRDVRDYFMPCPGRGHGHRN YPRDVRDYFMPCPGRGHGHRNGTGHGNSTH R D Y G R G 0 1 0 1 1 0 0 1 0 0 0 0 1 1 2 0 0 0 1 0 0 0 9 0 1141.4685 P02790 P02790 226 234 HPX Hemopexin yes yes 2 0.055227 69.998 By MS/MS 9 0 1 1 7825400 7825400 0 0 2366 401 2470 10033 8181 8181 1 4392400 0 0 DYGDLPFADIPNDSPFQIVK AGLLEKLKEQECDVKDYGDLPFADIPNDSP PFADIPNDSPFQIVKNPRSVGKASEQLAGK K D Y V K N 1 0 1 4 0 1 0 1 0 2 1 1 0 2 3 1 0 0 1 1 0 0 20 0 2250.0845 P05089 P05089 49 68 ARG1 Arginase-1 yes yes 2 1.1217E-05 95.651 By MS/MS 5 0 1 1 1344700 1344700 0 0 2367 422 2471 10034 8182 8182 1 1077300 0 0 DYGEIFNVQLPDKEER PHSALPEEVQELFIRDYGEIFNVQLPDKEE YGEIFNVQLPDKEERTKFFEDLILKQAAKP R D Y E R T 0 1 1 2 0 1 3 1 0 1 1 1 0 1 1 0 0 0 1 1 0 0 16 1 1950.9323 Q6PL18 Q6PL18 914 929 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2;3 1.3446E-05 162.32 By MS/MS 1.5 0.5 2 2 4 27178000 0 0 27178000 2368 1498 2472 10035;10036;10037;10038 8183;8184 8184 2 0 0 6008200 DYGHSSSRDDYPSR DTRDYAPPPRDYTYRDYGHSSSRDDYPSRG RDYGHSSSRDDYPSRGYSDRDGYGRDRDYS R D Y S R G 0 2 0 3 0 0 0 1 1 0 0 0 0 0 1 4 0 0 2 0 0 0 14 1 1640.6815 P38159;Q96E39 P38159 245 258 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 3 0.0055699 72.321 By MS/MS 6 0.816 1 1 1 3 9420200 0 9420200 0 2369 771;1772 2473 10039;10040;10041 8185 8185 1 0 3020800 0 DYGNSPLHR VQLPREGQEDQGLTKDYGNSPLHRFKKPGS DQGLTKDYGNSPLHRFKKPGSKNFQNIFPP K D Y H R F 0 1 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 9 0 1057.4941 P26599 P26599 429 437 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2 0.00026225 139.97 By MS/MS By matching By MS/MS 2.8 1.17 1 1 1 2 2 2 1 37655000 6076300 3256700 28322000 2370 671 2474 10042;10043;10044;10045;10046 8186;8187 8187 2 5154100 1424600 4625900 DYGVFIQFPSGLSGLAPK IHPGMLLIGFVKSIKDYGVFIQFPSGLSGL VFIQFPSGLSGLAPKAIMSDKFVTSTSDHF K D Y P K A 1 0 0 1 0 1 0 3 0 1 2 1 0 2 2 2 0 0 1 1 0 0 18 0 1894.9829 Q14690 Q14690 741 758 PDCD11 Protein RRP5 homolog yes yes 2 0.00072408 92.925 By MS/MS By MS/MS 1 0 2 1 1 6764700 0 586370 6178300 2371 1314 2475 10047;10048 8188;8189 8188 2 0 286610 1331200 DYGVLLEGSGLALR MNIALLSDLTKQISRDYGVLLEGSGLALRG RDYGVLLEGSGLALRGLFIIDPNGVIKHLS R D Y L R G 1 1 0 1 0 0 1 3 0 0 4 0 0 0 0 1 0 0 1 1 0 0 14 0 1461.7827 P30048 P30048 171 184 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.00032214 149.31 By matching By MS/MS 6.33 0.471 2 1 1 2 29920000 0 402170 29518000 2372 707 2476 10049;10050;10051 8190 8190 1 0 139220 5201800 DYGVYLEDSGHTLR IRIPLLSDLTHQISKDYGVYLEDSGHTLRG KDYGVYLEDSGHTLRGLFIIDDKGILRQIT K D Y L R G 0 1 0 2 0 0 1 2 1 0 2 0 0 0 0 1 1 0 2 1 0 0 14 0 1623.7529 Q13162 Q13162 187 200 PRDX4 Peroxiredoxin-4 yes yes 2;3 7.3028E-05 156.51 By MS/MS 7 0.816 2 2 2 6 106800000 0 0 106800000 2373 1227 2477 10052;10053;10054;10055;10056;10057 8191;8192;8193;8194;8195 8195 5 0 0 17737000 DYIPQAFPGGHSMILDSEVLLIDNK RSLKPVLPHKVAHFKDYIPQAFPGGHSMIL HSMILDSEVLLIDNKTGKPLPFGTLGVHKK K D Y N K T 1 0 1 3 0 1 1 2 1 3 3 1 1 1 2 2 0 0 1 1 0 0 25 0 2771.384 P49916 P49916 543 567 LIG3 DNA ligase 3 yes yes 3 0.068151 28.145 By MS/MS 2 0 1 1 845720 0 0 845720 2374 874 2478 10058 8196 8196 0 0 0 191120 DYLAHSSMDF LEAMQTKQVSNIGRKDYLAHSSMDF_____ NIGRKDYLAHSSMDF_______________ K D Y D F - 1 0 0 2 0 0 0 0 1 0 1 0 1 1 0 2 0 0 1 0 0 0 10 0 1184.4808 Q9UJV9 Q9UJV9 613 622 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.0045241 93.992 By MS/MS By matching 3.33 0.471 2 1 1 2 17905000 13574000 0 4331300 2375 2171 2479 10059;10060;10061 8197 8197 0 15661000 0 791650 DYLEAAIR RTHPVEIFYTPEPERDYLEAAIRTVIQIHM YTPEPERDYLEAAIRTVIQIHMCEEEEGDL R D Y I R T 2 1 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 949.4869 O43143 O43143 330 337 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.018663 85.359 By matching By MS/MS 2.5 0.5 1 1 1 1 14538000 0 3104800 11433000 2376 186 2480 10062;10063 8198 8198 1 0 1398100 2217500 DYLHLPPEIVPATLR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR DYLHLPPEIVPATLRRSRPETGRPRPKGLE R D Y L R R 1 1 0 1 0 0 1 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 15 0 1732.9512 P46783 P46783 81 95 RPS10 40S ribosomal protein S10 yes yes 2;3 0.00011715 107.06 By matching By MS/MS By MS/MS 6.86 1.73 1 1 1 1 4 4 2 1 7 6 373280000 2160700 84036000 287080000 2377 833 2481 10064;10065;10066;10067;10068;10069;10070;10071;10072;10073;10074;10075;10076;10077 8199;8200;8201;8202;8203;8204;8205;8206;8207;8208;8209;8210;8211;8212;8213;8214;8215;8216;8217;8218;8219;8220;8221;8222;8223;8224;8225;8226;8227;8228;8229;8230;8231 8202 33 2493000 45974000 52889000 DYLHYIR VVTKMKMQRTIVIRRDYLHYIRKYNRFEKR QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R D Y I R K 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 978.49232 P62280 P62280 91 97 RPS11 40S ribosomal protein S11 yes yes 2 0.018512 105.22 By matching By MS/MS By MS/MS 7.57 2.06 1 1 2 1 2 1 4 2 219050000 4369100 57410000 157270000 2378 1017 2482 10078;10079;10080;10081;10082;10083;10084 8232;8233;8234 8233 3 3408700 35873000 40660000 DYQAMLGVK EALQQSKEELARLLRDYQAMLGVKLSLDVE LARLLRDYQAMLGVKLSLDVEIATYRQLLE R D Y V K L 1 0 0 1 0 1 0 1 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1023.5059 CON__Q7Z794;Q7Z794 CON__Q7Z794 448 456 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.052039 70.919 By MS/MS 9 0 1 1 4052300 4052300 0 0 + 2379 95 2483 10085 8235 8235 1 2274600 0 0 DYQDNKADVILK KVWINTSDIILVGLRDYQDNKADVILKYNA GLRDYQDNKADVILKYNADEARSLKAYGEL R D Y L K Y 1 0 1 3 0 1 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1420.7198 P47813;O14602 P47813 83 94 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 7.6475E-05 158.05 By matching By MS/MS By MS/MS 6.8 1.17 1 1 1 2 2 1 2 44856000 6715000 3780700 34360000 2380 138 2484 10086;10087;10088;10089;10090 8236;8237 8236 2 6439200 1720100 5435300 DYQELMNTK DALQQAKEDLARLLRDYQELMNTKLALDLE LARLLRDYQELMNTKLALDLEIATYRTLLE R D Y T K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 9 0 1140.5121 P04264;CON__P04264;CON__Q3TTY5 P04264 464 472 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.7078E-17 184.49 By MS/MS By MS/MS By MS/MS 5.33 2.82 7 6 8 6 6 6 8 6 6 5 34 12 18 11272000000 9001600000 256410000 2013700000 + 2381 413;86 2485;2486 10091;10092;10093;10094;10095;10096;10097;10098;10099;10100;10101;10102;10103;10104;10105;10106;10107;10108;10109;10110;10111;10112;10113;10114;10115;10116;10117;10118;10119;10120;10121;10122;10123;10124;10125;10126;10127;10128;10129;10130;10131;10132;10133;10134;10135;10136;10137;10138;10139;10140;10141;10142;10143;10144;10145;10146;10147;10148;10149;10150;10151;10152;10153;10154 8238;8239;8240;8241;8242;8243;8244;8245;8246;8247;8248;8249;8250;8251;8252;8253;8254;8255;8256;8257;8258;8259;8260;8261;8262;8263;8264;8265;8266;8267;8268;8269;8270;8271;8272;8273;8274;8275;8276;8277;8278;8279;8280;8281;8282;8283;8284;8285;8286;8287;8288;8289;8290;8291;8292;8293;8294;8295;8296 8295 61 58 8804200000 174620000 851610000 DYQELMNTKLALDLEIATYRTLLEGEESR DALQQAKEDLARLLRDYQELMNTKLALDLE EIATYRTLLEGEESRMSGECAPNVSVSVST R D Y S R M 2 2 1 2 0 1 5 1 0 1 6 1 1 0 0 1 3 0 2 0 0 0 29 2 3413.7025 P04264;CON__P04264 P04264 464 492 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 2.6333E-48 178.91 By MS/MS 2 0 2 2 14784000 0 0 14784000 + 2382 413 2487 10155;10156 8297;8298 8297 2 0 0 3340900 DYQELMNVK EALQQAKEDLARLLRDYQELMNVKLALDVE LARLLRDYQELMNVKLALDVEIATYRKLLE R D Y V K L 0 0 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1138.5329 CON__P12035;P12035;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908 CON__P35908 468 476 KRT3;KRT76;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2 0.00042811 130.27 By MS/MS By MS/MS By MS/MS 5.71 3.08 5 4 3 2 2 4 5 4 4 5 20 7 11 4227700000 3282000000 94685000 850960000 + 2383 65;66;71;1135;54 2488;2489 10157;10158;10159;10160;10161;10162;10163;10164;10165;10166;10167;10168;10169;10170;10171;10172;10173;10174;10175;10176;10177;10178;10179;10180;10181;10182;10183;10184;10185;10186;10187;10188;10189;10190;10191;10192;10193;10194 8299;8300;8301;8302;8303;8304;8305;8306;8307;8308;8309;8310;8311;8312;8313;8314;8315;8316;8317;8318;8319;8320;8321;8322;8323;8324;8325;8326;8327;8328;8329;8330;8331;8332;8333;8334;8335;8336;8337;8338 8302 39 40 3132500000 64602000 496490000 DYSHYYTTIQDLR KIRDWYQKQGPGPSRDYSHYYTTIQDLRDK SRDYSHYYTTIQDLRDKILGATIENSRIVL R D Y L R D 0 1 0 2 0 1 0 0 1 1 1 0 0 0 0 1 2 0 3 0 0 0 13 0 1673.7686 CON__P08727;P08727 CON__P08727 126 138 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 0.00010203 133.91 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 188130000 0 9974200 178150000 + 2384 51 2490 10195;10196;10197;10198 8339;8340;8341;8342 8342 4 0 2571000 24849000 DYSQYYR KIRDWYQRQAPGPARDYSQYYRTIEELQNK RQAPGPARDYSQYYRTIEELQNKILTATVD R D Y Y R T 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 7 0 993.41921 Q04695;CON__Q04695 Q04695 130 136 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.0026253 136.58 By MS/MS By MS/MS By MS/MS 6.18 2.79 1 1 2 2 2 1 2 5 2 4 125530000 32769000 28198000 64558000 + 2385 73 2491 10199;10200;10201;10202;10203;10204;10205;10206;10207;10208;10209 8343;8344;8345;8346;8347;8348;8349 8348 7 41453000 7559100 11892000 DYTYEELLNR SFSNQTGPAWAGSERDYTYEELLNRVFNIM AGSERDYTYEELLNRVFNIMREKNPDMVAG R D Y N R V 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1314.6092 P20042 P20042 173 182 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 6.189E-23 194.44 By matching By MS/MS By MS/MS 5.57 1.05 1 3 1 2 1 2 4 108780000 3435600 10334000 95008000 2386 613 2492 10210;10211;10212;10213;10214;10215;10216 8350;8351;8352;8353;8354 8354 5 2752300 2852000 13966000 DYVAPTANLDQK AAERFAKERRLRIWRDYVAPTANLDQKDKQ IWRDYVAPTANLDQKDKQFVAKVMQVLNAD R D Y Q K D 2 0 1 2 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.6514 Q7KZF4 Q7KZF4 328 339 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00482 93.448 By MS/MS 2 0 1 1 0 0 0 0 2387 1518 2493 10217 8355 8355 1 0 0 0 DYVAQFEASALGK DFATVYVEAIKDSGRDYVAQFEASALGKQL GRDYVAQFEASALGKQLNLKLLDNWDTLAS R D Y G K Q 3 0 0 1 0 1 1 1 0 0 1 1 0 1 0 1 0 0 1 1 0 0 13 0 1397.6827 CON__P15497 CON__P15497 51 63 yes yes 2 3.8431E-12 151.15 By MS/MS By MS/MS By MS/MS 6.68 2.6 1 1 1 1 1 2 4 3 2 3 10 3 6 342230000 174660000 43933000 123640000 + 2388 59 2494 10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236 8356;8357;8358;8359;8360;8361;8362;8363;8364;8365;8366;8367;8368;8369;8370;8371 8368 16 289420000 75312000 58428000 DYVDLFR SGEVRTGKWKVPTYKDYVDLFRHLLSSDQM KWKVPTYKDYVDLFRHLLSSDQMMDSILAD K D Y F R H 0 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 926.44978 P78527 P78527 526 532 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0072048 124.89 By MS/MS By MS/MS 1 0 2 1 1 8016600 0 1491300 6525300 2389 1089 2495 10237;10238 8372;8373 8373 2 0 728920 1406000 DYVSQFEGSALGK DLATVYVDVLKDSGRDYVSQFEGSALGKQL GRDYVSQFEGSALGKQLNLKLLDNWDSVTS R D Y G K Q 1 0 0 1 0 1 1 2 0 0 1 1 0 1 0 2 0 0 1 1 0 0 13 0 1399.662 P02647 P02647 52 64 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 1.4947E-24 198.25 By MS/MS 6.67 4.03 1 1 1 3 115720000 115720000 0 0 2390 389 2496 10239;10240;10241 8374;8375;8376 8375 3 71688000 0 0 DYYINIR DRFNLPRRSTDFTSRDYYINIRKALVTGYF RSTDFTSRDYYINIRKALVTGYFMQVAHLE R D Y I R K 0 1 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 7 0 955.47633 O43143 O43143 684 690 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0159 109.88 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 18323000 0 10717000 7606400 2391 186 2497 10242;10243;10244 8377;8378 8378 2 0 4825900 1690600 EAAAAAAAAVAAAAAAAAAAEPYPVSGAK LKSMTSRDNYKAGSREAAAAAAAAVAAAAA AAAAAAEPYPVSGAKRKYQEDSDPERSDYE R E A A K R 19 0 0 0 0 0 2 1 0 0 0 1 0 0 2 1 0 0 1 2 0 0 29 0 2453.2551 Q6P6C2 Q6P6C2 29 57 ALKBH5 RNA demethylase ALKBH5 yes yes 3 2.9415E-21 103.14 By MS/MS By MS/MS 6 0.816 1 1 1 1 2 7203100 0 4484300 2718900 2392 1493 2498 10245;10246;10247 8379;8380 8379 2 0 1155900 434900 EAAAALVEEETR ALPYFDQGYEAPGVREAAAALVEEETRRYR GVREAAAALVEEETRRYRPTKNYLSYLTAP R E A T R R 4 1 0 0 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 0 1287.6307 O75934 O75934 30 41 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 3.3496E-34 158.47 By MS/MS 7 0 1 1 0 0 0 0 2393 290 2499 10248 8381 8381 1 0 0 0 EAAAALVEEETRR ALPYFDQGYEAPGVREAAAALVEEETRRYR VREAAAALVEEETRRYRPTKNYLSYLTAPD R E A R R Y 4 2 0 0 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 13 1 1443.7318 O75934 O75934 30 42 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2;3 1.5098E-33 208.56 By MS/MS By MS/MS 6.6 0.49 2 3 1 4 113680000 0 4056400 109630000 2394 290 2500 10249;10250;10251;10252;10253 8382;8383;8384;8385 8384 4 0 2329200 18440000 EAADAIDAEGASAPLMELLHSR QRVAAGVLCELAQDKEAADAIDAEGASAPL AEGASAPLMELLHSRNEGTATYAAAVLFRI K E A S R N 6 1 0 2 0 0 3 1 1 1 3 0 1 0 1 2 0 0 0 0 0 0 22 0 2266.09 P14923 P14923 616 637 JUP Junction plakoglobin yes yes 3 1.2051E-19 126.02 By MS/MS 6.5 1.5 1 1 2 10132000 10132000 0 0 2395 567 2501 10254;10255 8386;8387 8386 1 8307000 0 0 EAAENSLVAYK YHRYLAEFATGNDRKEAAENSLVAYKAASD NDRKEAAENSLVAYKAASDIAMTELPPTHP K E A Y K A 3 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1193.5928 P62258 P62258 143 153 YWHAE 14-3-3 protein epsilon yes yes 2 0.00023244 135.79 By MS/MS By MS/MS 7.2 1.17 2 1 1 1 4 1 84762000 0 28632000 56130000 2396 1011 2502 10256;10257;10258;10259;10260 8388;8389 8388 2 0 11610000 8397700 EAAEQDVEK RANARLFGIRAKRAKEAAEQDVEKKK____ RAKRAKEAAEQDVEKKK_____________ K E A E K K 2 0 0 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 9 0 1017.4615 P26373 P26373 201 209 RPL13 60S ribosomal protein L13 yes yes 2 0.00063974 128.69 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 7344200 0 5579600 1764600 2397 669 2503 10261;10262;10263;10264 8390;8391;8392;8393;8394;8395;8396 8391 7 0 2066100 313120 EAAFDDAVEER ______________________________ MADKEAAFDDAVEERVINEEYKIWKKNTPF K E A E R V 3 1 0 2 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 11 0 1250.5415 Q09028 Q09028 5 15 RBBP4 Histone-binding protein RBBP4 yes yes 2 4.3805E-05 145.9 By MS/MS 4.5 0.5 1 1 2 24361000 0 0 24361000 2398 1188 2504 10265;10266 8397;8398 8398 2 0 0 3822000 EAALILGVSPTANK GGYYRGGFEPKMTKREAALILGVSPTANKG REAALILGVSPTANKGKIRDAHRRIMLLNH R E A N K G 3 0 1 0 0 0 1 1 0 1 2 1 0 0 1 1 1 0 0 1 0 0 14 0 1382.7769 Q96DA6 Q96DA6 62 75 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 yes yes 2 0.0040788 91.215 By MS/MS 9.5 0.5 1 1 2 12777000 0 12777000 0 2399 1764 2505 10267;10268 8399 8399 1 0 26885000 0 EAALLALEEDIQANLIMK QTDAYSGAEIVAVCREAALLALEEDIQANL LLALEEDIQANLIMKRHFTQALSTVTPRIP R E A M K R 4 0 1 1 0 1 3 0 0 2 4 1 1 0 0 0 0 0 0 0 0 0 18 0 1984.0551 Q8NB90 Q8NB90 842 859 SPATA5 Spermatogenesis-associated protein 5 yes yes 3 2.7164E-06 106.19 By MS/MS 2 0 1 1 898600 0 0 898600 2400 1624 2506 10269 8400 8400 1 0 0 203070 EAALSTALSEK AQARLKDLEALLNSKEAALSTALSEKRTLE LNSKEAALSTALSEKRTLEGELHDLRGQVA K E A E K R 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 11 0 1118.5819 P02545 P02545 145 155 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.00032739 126.49 By matching By MS/MS By MS/MS 2.5 0.866 1 3 1 1 2 797210000 19651000 93531000 684030000 2401 387 2507 10270;10271;10272;10273 8401;8402;8403;8404 8403 4 22673000 39872000 132670000 EAALSTALSEKR AQARLKDLEALLNSKEAALSTALSEKRTLE NSKEAALSTALSEKRTLEGELHDLRGQVAK K E A K R T 3 1 0 0 0 0 2 0 0 0 2 1 0 0 0 2 1 0 0 0 0 0 12 1 1274.683 P02545 P02545 145 156 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 7.1453E-16 174.98 By matching By MS/MS By MS/MS 2.5 1.32 4 2 3 2 1 1 8 3 237970000 623810 160170000 77180000 2402 387 2508 10274;10275;10276;10277;10278;10279;10280;10281;10282;10283;10284;10285 8405;8406;8407;8408;8409;8410;8411;8412;8413 8412 9 623810 61137000 15208000 EAALTSEEVGADLEQVEVLQK LFREANELQQWINEKEAALTSEEVGADLEQ EEVGADLEQVEVLQKKFDDFQKDLKANESR K E A Q K K 3 0 0 1 0 2 5 1 0 0 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2257.1325 Q13813 Q13813 1111 1131 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.0305E-36 204.37 By MS/MS 1 0 2 2 9505200 0 9505200 0 2403 1268 2509 10286;10287 8414;8415 8414 2 0 4646000 0 EAALVQQEEEKAEQR RLARVNEQRMKAAEKEAALVQQEEEKAEQR EAALVQQEEEKAEQRKRARAEKKALKKKKK K E A Q R K 3 1 0 0 0 3 5 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1756.8592 Q15020 Q15020 587 601 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 3 0.00020481 98.654 By MS/MS By MS/MS 2 0 2 1 1 5079700 0 0 5079700 2404 1331 2510 10288;10289 8416;8417 8417 2 0 0 1147900 EAATAVEQEK LESLDQLELRVEALREAATAVEQEKEILLE VEALREAATAVEQEKEILLEMIHSIQNSQD R E A E K E 3 0 0 0 0 1 3 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 10 0 1074.5193 O95816 O95816 44 53 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.00099901 110.87 By MS/MS By MS/MS 7 0 2 1 1 10210000 0 639910 9569700 2405 342 2511 10290;10291 8418;8419 8419 2 0 367440 1698100 EAATLEVERPLPMEVEK PKRPKEAENPEGEEKEAATLEVERPLPMEV ATLEVERPLPMEVEKNSTPSEPGSGRGPPQ K E A E K N 2 1 0 0 0 0 5 0 0 0 2 1 1 0 2 0 1 0 0 2 0 0 17 1 1939.9925 P51858 P51858 181 197 HDGF Hepatoma-derived growth factor yes yes 3 0.0018111 70.783 By MS/MS 4.5 0.5 1 1 2 12636000 0 0 12636000 2406 899 2512 10292;10293 8420 8420 1 0 0 1807700 EAATQAQQTLGSTIDK ARETLKNSALSAQLREAATQAQQTLGSTID AATQAQQTLGSTIDKATGILLYGLASRLRD R E A D K A 3 0 0 1 0 3 1 1 0 1 1 1 0 0 0 1 3 0 0 0 0 0 16 0 1660.8268 P47897 P47897 35 50 QARS Glutamine--tRNA ligase yes yes 2 3.6011E-05 122.34 By MS/MS 3 0 1 1 10025000 0 0 10025000 2407 838 2513 10294 8421 8421 1 0 0 1944400 EAAWAISNLTISGR MIIHQLAKGDFGTQKEAAWAISNLTISGRK KEAAWAISNLTISGRKDQVEYLVQQNVIPP K E A G R K 3 1 1 0 0 0 1 1 0 2 1 0 0 0 0 2 1 1 0 0 0 0 14 0 1487.7732 O00505;O00629 O00505 387 400 KPNA3;KPNA4 Importin subunit alpha-4;Importin subunit alpha-3 no no 2 7.9746E-05 157.68 By MS/MS By MS/MS 4 0 2 1 1 19530000 0 12228000 7301700 2408 126;132 2514 10295;10296 8422;8423 8422 2 0 4058000 1192600 EAAWAITNATSGGSAEQIK ALISILQTAEFRTRKEAAWAITNATSGGSA AITNATSGGSAEQIKYLVELGCIKPLCDLL K E A I K Y 5 0 1 0 0 1 2 2 0 2 0 1 0 0 0 2 2 1 0 0 0 0 19 0 1903.9276 P52294 P52294 399 417 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 2 8.2004E-52 219.97 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 20347000 0 7969600 12378000 2409 904 2515 10297;10298;10299 8424;8425 8424 2 0 2644800 2173000 EAAWAITNATSGGTPEQIR VLIEILQKAEFRTRKEAAWAITNATSGGTP AITNATSGGTPEQIRYLVSLGCIKPLCDLL K E A I R Y 4 1 1 0 0 1 2 2 0 2 0 0 0 0 1 1 3 1 0 0 0 0 19 0 1971.965 O60684;O15131 O60684 397 415 KPNA6;KPNA5 Importin subunit alpha-7;Importin subunit alpha-6 yes no 2 5.7357E-41 214.81 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 25011000 0 8503900 16507000 2410 167 2516 10300;10301;10302 8426;8427 8427 2 0 2822100 2844400 EAAYNAITLPEEFHDFDQPLPDLDDIDVAQQFSLNQSR MAFRPGVVDLPEENREAAYNAITLPEEFHD DDIDVAQQFSLNQSRVEEITMREEVGNISI R E A S R V 4 1 2 6 0 4 3 0 1 2 4 0 0 3 3 2 1 0 1 1 0 0 38 0 4361.04 O60216 O60216 102 139 RAD21 Double-strand-break repair protein rad21 homolog yes yes 4 1.6065E-13 62.827 By MS/MS 2 0 1 1 3206300 0 0 3206300 2411 219 2517 10303 8428 8428 1 0 0 724550 EADGSETPEPFAAEAK VTVMLSGIKCPTFRREADGSETPEPFAAEA ADGSETPEPFAAEAKFFTESRLLQRDVQII R E A A K F 4 0 0 1 0 0 4 1 0 0 0 1 0 1 2 1 1 0 0 0 0 0 16 0 1647.7264 Q7KZF4 Q7KZF4 234 249 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 5.1476E-05 112.02 By MS/MS 2 0 1 1 6857500 0 6857500 0 2412 1518 2518 10304 8429 8429 1 0 3088000 0 EADIDGDGQVNYEEFVQMMTAK LGEKLTDEEVDEMIREADIDGDGQVNYEEF GQVNYEEFVQMMTAK_______________ R E A A K - 2 0 1 3 0 2 3 2 0 1 0 1 2 1 0 0 1 0 1 2 0 0 22 0 2489.0727 P0DP25;P0DP24;P0DP23 P0DP25 128 149 yes no 2;3 1.6037E-28 180.97 By MS/MS 8 0 2 2 14718000 0 0 14718000 2413 505 2519 10305;10306 8430;8431 8430 2 0 0 2256400 EADLAAQEEAAK AAFQKERAIFLAAQKEADLAAQEEAAKK__ AQKEADLAAQEEAAKK______________ K E A A K K 5 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 12 0 1244.5885 Q9Y3B7 Q9Y3B7 180 191 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.00060696 123.63 By MS/MS 7 0 1 1 11973000 0 0 11973000 2414 2266 2520 10307 8432 8432 1 0 0 2124600 EADLAAQEEAAKK AAFQKERAIFLAAQKEADLAAQEEAAKK__ QKEADLAAQEEAAKK_______________ K E A K K - 5 0 0 1 0 1 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 13 1 1372.6834 Q9Y3B7 Q9Y3B7 180 192 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.014084 91.855 By MS/MS 7 0 1 1 2575900 0 0 2575900 2415 2266 2521 10308 8433 8433 1 0 0 457080 EADQTHAQNFSSAVK RQLRALLLSHQFKRREADQTHAQNFSSAVK EADQTHAQNFSSAVKSPVQVILLRALAFLA R E A V K S 3 0 1 1 0 2 1 0 1 0 0 1 0 1 0 2 1 0 0 1 0 0 15 0 1631.754 Q5SNT2 Q5SNT2 195 209 TMEM201 Transmembrane protein 201 yes yes 2;3 9.2427E-19 126.83 By MS/MS 5 0 2 2 20263000 0 0 20263000 2416 1444 2522 10309;10310 8434;8435 8435 2 0 0 2826300 EAEEKEKEGIVK AFRIIKEVQKRYKTREAEEKEKEGIVKQDS KTREAEEKEKEGIVKQDSLVINLNRSNPKL R E A V K Q 1 0 0 0 0 0 5 1 0 1 0 3 0 0 0 0 0 0 0 1 0 0 12 2 1387.7195 Q9Y5B9 Q9Y5B9 636 647 SUPT16H FACT complex subunit SPT16 yes yes 3 0.010821 77.124 By MS/MS 2 0 1 1 4561000 0 4561000 0 2417 2296 2523 10311 8436 8436 1 0 2053900 0 EAEEVYR QKVMDEVEKARAKKREAEEVYRNSMPASSF EKARAKKREAEEVYRNSMPASSFQQQKLRV R E A Y R N 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 7 0 894.40831 Q9Y383 Q9Y383 168 174 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes yes 2 0.036428 86.866 By MS/MS 5 0 1 1 1038300 0 0 1038300 2418 2259 2524 10312 8437;8438 8437 2 0 0 144820 EAEKLESEHPDQAQAILSR RDLVAIEAKLSDLQKEAEKLESEHPDQAQA LESEHPDQAQAILSRLAEISDVWEEMKTTL K E A S R L 3 1 0 1 0 2 4 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 19 1 2150.0604 Q01082 Q01082 1018 1036 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3;4 1.1356E-30 205.27 By MS/MS By MS/MS 1.5 0.764 4 1 1 1 5 130030000 0 16183000 113840000 2419 1128 2525 10313;10314;10315;10316;10317;10318 8439;8440;8441;8442 8441 4 0 7909900 24496000 EAEKSEDSSGAAGLSGLHR KEIEEDKLKREEEKREAEKSEDSSGAAGLS SEDSSGAAGLSGLHRTYSQDCSFKNSMYHV R E A H R T 3 1 0 1 0 0 3 3 1 0 2 1 0 0 0 4 0 0 0 0 0 0 19 1 1899.8922 Q86U86 Q86U86 927 945 PBRM1 Protein polybromo-1 yes yes 3;4 2.5723E-09 142.55 By MS/MS 1 0 2 2 16991000 0 0 16991000 2420 1545 2526 10319;10320 8443;8444 8443 2 0 0 3660900 EAEQMGNELER RQFCSTQAALQAMEREAEQMGNELERLRAA AMEREAEQMGNELERLRAALMESQGQQQEE R E A E R L 1 1 1 0 0 1 4 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 11 0 1304.5667 Q14980 Q14980 973 983 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 1.3356E-26 200.56 By MS/MS 1 0 1 1 27063000 0 0 27063000 2421 1327 2527 10321 8445 8445 1 0 0 5831100 EAFAGDDVIRDFLK ELEDEEERNHRQMIKEAFAGDDVIRDFLKE KEAFAGDDVIRDFLKEKREAVEASKPKDVD K E A L K E 2 1 0 3 0 0 1 1 0 1 1 1 0 2 0 0 0 0 0 1 0 0 14 1 1594.7991 Q9BVJ6;Q5TAP6 Q9BVJ6 597 610 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 0.0071174 68.972 By MS/MS 2 0 1 1 4317900 0 0 4317900 2422 1915 2528 10322 8446 8446 1 0 0 975770 EAFDLFDADGTGTIDVK SPKPELTEEQKQEIREAFDLFDADGTGTID FDLFDADGTGTIDVKELKVAMRALGFEPKK R E A V K E 2 0 0 4 0 0 1 2 0 1 1 1 0 2 0 0 2 0 0 1 0 0 17 0 1812.8418 P41208 P41208 35 51 CETN2 Centrin-2 yes yes 2 5.7396E-05 101.32 By MS/MS 8 0 1 1 13765000 0 0 13765000 2423 791 2529 10323 8447 8447 1 0 0 2110300 EAFLNTEDKGDSLDSVEALIK FHRDCEQAENWMAAREAFLNTEDKGDSLDS EDKGDSLDSVEALIKKHEDFDKAINVQEEK R E A I K K 2 0 1 3 0 0 3 1 0 1 3 2 0 1 0 2 1 0 0 1 0 0 21 1 2293.1325 Q13813 Q13813 1465 1485 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.8236E-140 274.81 By matching By MS/MS 1.25 0.433 3 1 1 3 62278000 0 5182100 57096000 2424 1268 2530 10324;10325;10326;10327 8448;8449;8450 8449 3 0 2532900 12403000 EAFLVNSDLTLR SYIGLSFQDFYQQCREAFLVNSDLTLRAQL QCREAFLVNSDLTLRAQLTEFRDHKLIRTK R E A L R A 1 1 1 1 0 0 1 0 0 0 3 0 0 1 0 1 1 0 0 1 0 0 12 0 1376.73 Q13416 Q13416 522 533 ORC2 Origin recognition complex subunit 2 yes yes 2 0.0010417 117.7 By MS/MS 3 0 1 1 7571000 0 0 7571000 2425 1244 2531 10328 8451 8451 1 0 0 1468400 EAFNMIDQNR NVFAMFDQSQIQEFKEAFNMIDQNRDGFID IQEFKEAFNMIDQNRDGFIDKEDLHDMLAS K E A N R D 1 1 2 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 10 0 1236.5557 P19105;O14950;P24844 P19105 35 44 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2 3.9675E-22 186.25 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 116950000 0 67739000 49208000 2426 154;652 2532 10329;10330;10331;10332;10333 8452;8453;8454 8453 3 0 33441000 8099800 EAFQLFDR ______________________________ DQTAEFKEAFQLFDRTGDGKILYSQCGDVM K E A D R T 1 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1024.4978 P60660 P60660 14 21 MYL6 Myosin light polypeptide 6 yes yes 2 0.00021081 138.9 By matching By MS/MS 8.33 0.471 2 1 1 2 44007000 712730 0 43294000 2427 965 2533 10334;10335;10336 8455;8456 8456 2 611900 0 8588000 EAFQSVVLPAFEK AAADTLQGPMQAAYREAFQSVVLPAFEKSC YREAFQSVVLPAFEKSCQAMFQQINDSFRL R E A E K S 2 0 0 0 0 1 2 0 0 0 1 1 0 2 1 1 0 0 0 2 0 0 13 0 1463.766 Q6P2E9 Q6P2E9 1116 1128 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.022093 77.64 By MS/MS 2 0 1 1 2972600 0 2972600 0 2428 1489 2534 10337 8457 8457 1 0 1338600 0 EAFSLFDKDGDGTITTK ______________________________ FSLFDKDGDGTITTKELGTVMRSLGQNPTE K E A T K E 1 0 0 3 0 0 1 2 0 1 1 2 0 2 0 1 3 0 0 0 0 0 17 1 1843.884 P0DP25;P0DP24;P0DP23 P0DP25 15 31 yes no 2;3 2.7184E-60 234.83 By MS/MS By MS/MS 7.62 0.484 3 5 1 7 231250000 0 3662300 227590000 2429 505 2535 10338;10339;10340;10341;10342;10343;10344;10345 8458;8459;8460;8461;8462;8463;8464 8461 7 0 1666200 35504000 EAFTADGDQVFAGR ARAVMQSQKPPKNCREAFTADGDQVFAGRY REAFTADGDQVFAGRYYSSENTRPKFLSRD R E A G R Y 3 1 0 2 0 1 1 2 0 0 0 0 0 2 0 0 1 0 0 1 0 0 14 0 1482.6739 Q96SB8 Q96SB8 635 648 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2 9.49E-05 156.48 By MS/MS 1.5 0.5 1 1 2 11449000 0 0 11449000 2430 1833 2536 10346;10347 8465 8465 1 0 0 2561900 EAGAGGLAIAVEGPSK RAEAGVPAEFSIWTREAGAGGLAIAVEGPS AGAGGLAIAVEGPSKAEISFEDRKDGSCGV R E A S K A 4 0 0 0 0 0 2 4 0 1 1 1 0 0 1 1 0 0 0 1 0 0 16 0 1425.7464 P21333 P21333 2265 2280 FLNA Filamin-A yes yes 2 4.4499E-05 136.01 By MS/MS By MS/MS 1 0 2 1 1 25660000 0 15059000 10601000 2431 623 2537 10348;10349 8466;8467;8468 8466 3 0 7360400 2284200 EAGAGGLSIAVEGPSK RGVAGVPAEFSIWTREAGAGGLSIAVEGPS AGAGGLSIAVEGPSKAEIAFEDRKDGSCGV R E A S K A 3 0 0 0 0 0 2 4 0 1 1 1 0 0 1 2 0 0 0 1 0 0 16 0 1441.7413 O75369;Q14315 Q14315 2341 2356 FLNB;FLNC Filamin-B;Filamin-C no no 2 3.3876E-05 128.54 By MS/MS 1.5 0.5 1 1 2 15588000 0 15588000 0 2432 1298;254 2538 10350;10351 8469 8469 1 0 7506200 0 EAGDVCYADVQK LPPSGSWQDLKDHMREAGDVCYADVQKDGV HMREAGDVCYADVQKDGVGMVEYLRKEDME R E A Q K D 2 0 0 2 1 1 1 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 12 0 1353.5871 Q13242 Q13242 133 144 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.0013282 114.5 By MS/MS 7 0 1 1 27473000 0 0 27473000 2433 1232 2539 10352 8470 8470 1 0 0 4874900 EAGDVCYADVYR LPPSGSWQDLKDHMREAGDVCYADVYRDGT HMREAGDVCYADVYRDGTGVVEFVRKEDMT R E A Y R D 2 1 0 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 2 2 0 0 12 0 1416.598 Q07955 Q07955 143 154 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 0.00012454 137.98 By matching By MS/MS 6 0 2 1 1 50003000 0 2440200 47563000 2434 1179 2540 10353;10354 8471 8471 1 0 844730 7115900 EAGEQGDIEPR QRINIPPQRGPRPIREAGEQGDIEPRRMVR RPIREAGEQGDIEPRRMVRHPDSHQLFIGN R E A P R R 1 1 0 1 0 1 3 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 11 0 1199.5418 Q13283 Q13283 321 331 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 5.1528E-07 155.58 By MS/MS By MS/MS 4.8 1.47 1 2 1 1 4 1 24251000 0 12436000 11815000 2435 1236 2541 10355;10356;10357;10358;10359 8472;8473;8474;8475;8476 8476 5 0 4657400 1929800 EAGFGGGPNATITTSLK AWQAVEPSDIAACFREAGFGGGPNATITTS GFGGGPNATITTSLKSEGEEEEEEEEEEEE R E A L K S 2 0 1 0 0 0 1 4 0 1 1 1 0 1 1 1 3 0 0 0 0 0 17 0 1619.8155 P07199 P07199 386 402 CENPB Major centromere autoantigen B yes yes 2 0.0045125 76.868 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 22400000 0 2408900 19991000 2436 455 2542 10360;10361;10362 8477;8478 8478 1 0 1026900 3729000 EAGFLRPVTIFGPIADVAR PVQTKFPAYERVVLREAGFLRPVTIFGPIA LRPVTIFGPIADVAREKLAREEPDIYQIAK R E A A R E 3 2 0 1 0 0 1 2 0 2 1 0 0 2 2 0 1 0 0 2 0 0 19 1 2028.1156 Q07157 Q07157 640 658 TJP1 Tight junction protein ZO-1 yes yes 3 7.6177E-05 92.563 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 8488400 0 516870 7971600 2437 1177 2543 10363;10364;10365 8479;8480 8480 1 0 252640 1741300 EAGLVAQHPPAR KLKKERKKEERQRLREAGLVAQHPPARRSG RLREAGLVAQHPPARRSGAELALDYLCRWA R E A A R R 3 1 0 0 0 1 1 1 1 0 1 0 0 0 2 0 0 0 0 1 0 0 12 0 1244.6626 Q9BRJ6 Q9BRJ6 84 95 C7orf50 Uncharacterized protein C7orf50 yes yes 2;3 3.999E-05 148.52 By matching By MS/MS By MS/MS 7 0 6 1 2 3 41303000 4675500 13586000 23042000 2438 1889 2544 10366;10367;10368;10369;10370;10371 8481;8482;8483;8484 8482 4 10077000 7800900 4088600 EAGNINQSLMTLR SERTNRTRAEGNRLREAGNINQSLMTLRTC LREAGNINQSLMTLRTCMDVLRENQMYGTN R E A L R T 1 1 2 0 0 1 1 1 0 1 2 0 1 0 0 1 1 0 0 0 0 0 13 0 1445.7297 Q02241 Q02241 356 368 KIF23 Kinesin-like protein KIF23 yes yes 2 2.4202E-05 161.19 By matching By MS/MS 2 0 2 1 1 12192000 3205900 8986600 0 2439 1145 2545 10372;10373 8485 8485 1 3862700 4046800 0 EAGPNPSRPTSWK IIHDRPDITHPRHPREAGPNPSRPTSWKSE PREAGPNPSRPTSWKSEGSMSTDKRETRVE R E A W K S 1 1 1 0 0 0 1 1 0 0 0 1 0 0 3 2 1 1 0 0 0 0 13 1 1425.7001 Q9NWH9 Q9NWH9 872 884 SLTM SAFB-like transcription modulator yes yes 3 0.052261 47.189 By matching By MS/MS 2 0 2 1 1 7539300 3031600 0 4507800 2440 2078 2546 10374;10375 8486 8486 1 3652700 0 1018700 EAGQFGHDIHHTAGQAGK RVVQGLHHGVSQAGREAGQFGHDIHHTAGQ QFGHDIHHTAGQAGKEGDIAVHGVQPGVHE R E A G K E 3 0 0 1 0 2 1 4 3 1 0 1 0 1 0 0 1 0 0 0 0 0 18 0 1859.8663 Q6UWP8 Q6UWP8 418 435 SBSN Suprabasin yes yes 3 0.026583 40.085 By MS/MS 2.5 1.12 1 1 1 1 4 4354700 4354700 0 0 2441 1504 2547 10376;10377;10378;10379 8487 8487 1 4448900 0 0 EAGSEPAPEQESTEATPAE RRHKHKKSKRSKEGKEAGSEPAPEQESTEA EPAPEQESTEATPAE_______________ K E A A E - 4 0 0 0 0 1 6 1 0 0 0 0 0 0 3 2 2 0 0 0 0 0 19 0 1928.8123 Q6UN15 Q6UN15 576 594 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 2 8.1046E-06 105.03 By MS/MS By matching 3 0 2 1 1 8247000 3899800 0 4347200 2442 1503 2548 10380;10381 8488 8488 1 4499500 0 843150 EAGTKEEPVTADVINPMALR AKLGLKPLEVNAIKKEAGTKEEPVTADVIN EEPVTADVINPMALRQREELREKLAAAKEK K E A L R Q 3 1 1 1 0 0 3 1 0 1 1 1 1 0 2 0 2 0 0 2 0 0 20 1 2140.0834 O43290 O43290 143 162 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 1.0862E-05 85.974 By MS/MS 1.5 0.5 1 1 2 8036100 0 8036100 0 2443 193 2549 10382;10383 8489 8489 1 0 3687100 0 EAHEPLAVADAK KINKQLKKVLKKIVKEAHEPLAVADAKLGG IVKEAHEPLAVADAKLGGVIKEKLNLSCIH K E A A K L 4 0 0 1 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1249.6303 Q9Y2X3 Q9Y2X3 82 93 NOP58 Nucleolar protein 58 yes yes 2;3 7.843E-08 164.33 By matching By MS/MS By MS/MS 4.11 0.994 3 3 2 1 1 1 7 176370000 1849300 3492400 171030000 2444 2254 2550 10384;10385;10386;10387;10388;10389;10390;10391;10392 8490;8491;8492;8493;8494;8495;8496 8492 5 2133700 1159000 29974000 EAHQLFLEPEVLDPESVELK LDPNKYPVPENWLHKEAHQLFLEPEVLDPE FLEPEVLDPESVELKWSEPNEEELIKFMCG K E A L K W 1 0 0 1 0 1 5 0 1 0 4 1 0 1 2 1 0 0 0 2 0 0 20 0 2321.1791 P39748 P39748 278 297 FEN1 Flap endonuclease 1 yes yes 2;3 1.3494E-45 209.6 By MS/MS 3.33 1.49 1 1 1 1 2 6 95287000 0 0 95287000 2445 780 2551 10393;10394;10395;10396;10397;10398 8497;8498;8499 8499 3 0 0 14078000 EAIAELER EIQRQQSDHDAERLREAIAELEREKEKLQQ HDAERLREAIAELEREKEKLQQEAKLLQLK R E A E R E 2 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 929.48181 Q15149 Q15149 2587 2594 PLEC Plectin yes yes 2 0.00056011 113.91 By MS/MS 1 0 1 1 0 0 0 0 2446 1348 2552 10399 8500 8500 1 0 0 0 EAIDSPVSFLALHNQIR HQTGLKVVRLCAKSREAIDSPVSFLALHNQ IDSPVSFLALHNQIRNMDSMPELQKLQQLK R E A I R N 2 1 1 1 0 1 1 0 1 2 2 0 0 1 1 2 0 0 0 1 0 0 17 0 1909.0058 Q92900 Q92900 561 577 UPF1 Regulator of nonsense transcripts 1 yes yes 3 1.8045E-06 115.91 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 20651000 0 7313900 13337000 2447 1729 2553 10400;10401;10402 8501;8502 8502 2 0 3293600 2995500 EAIDSYIK WSQLAKAQLQKGMVKEAIDSYIKADDPSSY LQKGMVKEAIDSYIKADDPSSYMEVVQAAN K E A I K A 1 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 1 0 0 0 8 0 937.47566 Q00610 Q00610 1123 1130 CLTC Clathrin heavy chain 1 yes yes 2 0.016148 87.323 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 84108000 0 19431000 64677000 2448 1125 2554 10403;10404;10405;10406;10407 8503;8504;8505 8504 3 0 9128300 13836000 EAIEGTYIDK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT FKTPKEAIEGTYIDKKCPFTGNVSIRGRIL K E A D K K 1 0 0 1 0 0 2 1 0 2 0 1 0 0 0 0 1 0 1 0 0 0 10 0 1137.5554 P62280 P62280 49 58 RPS11 40S ribosomal protein S11 yes yes 2 0.017878 84.213 By MS/MS 8 0.816 1 1 1 3 127600000 0 0 127600000 2449 1017 2555 10408;10409;10410 8506 8506 1 0 0 22619000 EAIEGTYIDKK PRYYKNIGLGFKTPKEAIEGTYIDKKCPFT KTPKEAIEGTYIDKKCPFTGNVSIRGRILS K E A K K C 1 0 0 1 0 0 2 1 0 2 0 2 0 0 0 0 1 0 1 0 0 0 11 1 1265.6503 P62280 P62280 49 59 RPS11 40S ribosomal protein S11 yes yes 2;3 0.0034599 109.02 By MS/MS By MS/MS 7 1.1 1 2 4 2 1 4 6 368380000 0 18508000 349880000 2450 1017 2556 10411;10412;10413;10414;10415;10416;10417;10418;10419;10420 8507;8508;8509;8510;8511;8512 8510 6 0 9884400 61302000 EAIESAIGGNAYQHSK EETAFVVDEVSNIVKEAIESAIGGNAYQHS AIESAIGGNAYQHSKVNQWTTNVVEQTLSQ K E A S K V 3 0 1 0 0 1 2 2 1 2 0 1 0 0 0 2 0 0 1 0 0 0 16 0 1673.8009 P63172 P63172 23 38 DYNLT1 Dynein light chain Tctex-type 1 yes yes 2 6.0395E-46 158.04 By MS/MS 9 0 1 1 0 0 0 0 2451 1063 2557 10421 8513 8513 1 0 0 0 EAILAIHK HDQFKSTLPDADREREAILAIHKEAQRIAE PDADREREAILAIHKEAQRIAESNHIKLSG R E A H K E 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 893.53345 O43707 O43707 585 592 ACTN4 Alpha-actinin-4 yes yes 2 0.037583 76.035 By matching By MS/MS 2.33 0.471 2 1 1 2 39003000 2887700 36115000 0 2452 210 2558 10422;10423;10424 8514 8514 1 3479300 16105000 0 EAILEYILHQK CHDPVVTPDGYLYEREAILEYILHQKKEIA LYEREAILEYILHQKKEIARQMKAYEKQRG R E A Q K K 1 0 0 0 0 1 2 0 1 2 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1355.7449 Q9Y314 Q9Y314 68 78 NOSIP Nitric oxide synthase-interacting protein yes yes 3 0.024082 60.167 By MS/MS 6 0 1 1 2182100 0 0 2182100 2453 2257 2559 10425 8515 8515 1 0 0 326460 EAINVEQAFQTIAR CYSKNNIPYFETSAKEAINVEQAFQTIARN KEAINVEQAFQTIARNALKQETEVELYNEF K E A A R N 3 1 1 0 0 2 2 0 0 2 0 0 0 1 0 0 1 0 0 1 0 0 14 0 1588.8209 P51149 P51149 158 171 RAB7A Ras-related protein Rab-7a yes yes 2 7.6068E-59 237.84 By MS/MS By MS/MS 7.75 0.829 2 1 1 1 3 35221000 0 4758400 30463000 2454 890 2560 10426;10427;10428;10429 8516;8517 8517 2 0 2732300 5832700 EAITHLLGVALTR LENPTINHQKNRPTREAITHLLGVALTRYN TREAITHLLGVALTRYNHMLSATVKIIQML R E A T R Y 2 1 0 0 0 0 1 1 1 1 3 0 0 0 0 0 2 0 0 1 0 0 13 0 1392.8089 Q15021 Q15021 221 233 NCAPD2 Condensin complex subunit 1 yes yes 2;3 0.00037295 126.33 By MS/MS 2 0.707 1 2 1 4 15128000 0 0 15128000 2455 1332 2561 10430;10431;10432;10433 8518;8519 8519 2 0 0 3371900 EAIVAALLTR RQEFIRIRPNREGDREAIVAALLTRTFTDH REGDREAIVAALLTRTFTDHVMLFTQTKKQ R E A T R T 3 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1055.6339 Q96GQ7 Q96GQ7 451 460 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 1.4376E-05 152.34 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 23404000 0 3287000 20117000 2456 1793 2562 10434;10435;10436;10437 8520;8521;8522;8523 8521 4 0 1480200 4349100 EAIVTSEELGQDLEHVEVLQK YLRECEDVMDWINDKEAIVTSEELGQDLEH EELGQDLEHVEVLQKKFEEFQTDMAAHEER K E A Q K K 1 0 0 1 0 2 5 1 1 1 3 1 0 0 0 1 1 0 0 3 0 0 21 0 2365.2013 Q13813 Q13813 169 189 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 7.1742E-07 96.79 By MS/MS 2 0.816 1 1 1 3 29263000 0 0 29263000 2457 1268 2563 10438;10439;10440 8524 8524 1 0 0 6320900 EAIYSGYIR LVLSKEDFEKKEKNKEAIYSGYIRNRKPSD KKEKNKEAIYSGYIRNRKPSDSVHITNDDE K E A I R N 1 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 2 0 0 0 9 0 1070.5397 A6NHR9 A6NHR9 280 288 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.050058 71.491 By MS/MS 1 0 1 1 8166400 0 8166400 0 2458 15 2564 10441 8525 8525 1 0 3991600 0 EAKPDELMDSK IFAPPNTSDMEAVWKEAKPDELMDSKLRCV AVWKEAKPDELMDSKLRCVFEMPNENDKLN K E A S K L 1 0 0 2 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 0 0 0 11 1 1261.586 Q9P0L0 Q9P0L0 115 125 VAPA Vesicle-associated membrane protein-associated protein A yes yes 2 0.054534 96.957 By MS/MS 6 0 1 1 27286000 0 0 27286000 2459 2116 2565 10442 8526 8526 1 0 0 4082200 EAKPEDLMDSK MFAPTDTSDMEAVWKEAKPEDLMDSKLRCV AVWKEAKPEDLMDSKLRCVFELPAENDKPH K E A S K L 1 0 0 2 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 0 0 0 11 1 1261.586 O95292 O95292 108 118 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 3 0.055128 49.448 By matching By MS/MS 6.33 0.471 2 1 1 2 20535000 0 1347500 19188000 2460 317 2566 10443;10444;10445 8527 8527 1 0 466460 2966000 EALAFIIR LFEGLKFFLNREVPREALAFIIRSFGGEVS LNREVPREALAFIIRSFGGEVSWDKSLCIG R E A I R S 2 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 8 0 931.5491 O00541 O00541 341 348 PES1 Pescadillo homolog yes yes 2 3.5092E-09 170.94 By matching By MS/MS By MS/MS 3 1 1 3 2 1 2 3 53497000 1718000 23374000 28405000 2461 127 2567 10446;10447;10448;10449;10450;10451 8528;8529;8530;8531 8528 4 1982100 9786600 5519100 EALENANTNTEVLK LAQIDGTLSTIEFQREALENANTNTEVLKN REALENANTNTEVLKNMGYAAKAMKAAHDN R E A L K N 2 0 3 0 0 0 3 0 0 0 2 1 0 0 0 0 2 0 0 1 0 0 14 0 1544.7682 Q9H444 Q9H444 94 107 CHMP4B Charged multivesicular body protein 4b yes yes 2 8.3747E-08 172.8 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 1 4 116530000 0 0 116530000 2462 1981 2568 10452;10453;10454;10455;10456 8532;8533 8533 2 0 0 17902000 EALESVEVLIK DFYDKIEAKKWQERKEALESVEVLIKNPKL QERKEALESVEVLIKNPKLEAGDYADLVKA K E A I K N 1 0 0 0 0 0 3 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 11 0 1228.6915 Q14008 Q14008 298 308 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.017257 85.744 By MS/MS 1 0 1 1 17100000 0 0 17100000 2463 1279 2569 10457 8534 8534 1 0 0 3684400 EALFNEFVAAAR AKDSRFKAIEKMKDREALFNEFVAAARKKE KDREALFNEFVAAARKKEKEDSKTRGEKIK R E A A R K 4 1 1 0 0 0 2 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 12 0 1336.6776 O14776 O14776 770 781 TCERG1 Transcription elongation regulator 1 yes yes 2 2.1985E-05 152.38 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 13649000 0 3297300 10352000 2464 145 2570 10458;10459;10460 8535;8536 8536 2 0 1484800 1851800 EALGDAQQSVR YGNRAATLMMLGRFREALGDAQQSVRLDDS GRFREALGDAQQSVRLDDSFVRGHLREGKC R E A V R L 2 1 0 1 0 2 1 1 0 0 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1172.5786 Q99615 Q99615 80 90 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 2 0.00015326 138.98 By matching By MS/MS 3 0.816 1 1 1 2 1 39027000 36867000 0 2160900 2465 1854 2571 10461;10462;10463 8537 8537 1 44142000 0 352940 EALGGQALYPHVLVK TKNGKWMGIAFRIQKEALGGQALYPHVLVK EALGGQALYPHVLVKNCAVEFNFGQRAEPY K E A V K N 2 0 0 0 0 1 1 2 1 0 3 1 0 0 1 0 0 0 1 2 0 0 15 0 1593.8879 Q9BUJ2 Q9BUJ2 361 375 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 2 0.0052355 83.081 By MS/MS 2.5 0.5 1 1 2 20954000 0 0 20954000 2466 1907 2572 10464;10465 8538;8539 8539 2 0 0 4409900 EALIAASETLK LSRHNTAVSQLTKAKEALIAASETLKERKA TKAKEALIAASETLKERKAAIRDIEGKLPQ K E A L K E 3 0 0 0 0 0 2 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 11 0 1144.634 Q9NTJ3 Q9NTJ3 525 535 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.025272 81.263 By MS/MS 1.5 0.5 1 1 2 17553000 0 0 17553000 2467 2054 2573 10466;10467 8540 8540 1 0 0 3869900 EALLAALGYK PSREEELAAVREAEREALLAALGYKNVKKQ REAEREALLAALGYKNVKKQPTGLSKEDFA R E A Y K N 3 0 0 0 0 0 1 1 0 0 3 1 0 0 0 0 0 0 1 0 0 0 10 0 1047.5964 Q9BU76 Q9BU76 76 85 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 0.0060111 95.741 By MS/MS By MS/MS 6 0 2 1 1 13836000 0 2324400 11511000 2468 1904 2574 10468;10469 8541;8542 8541 2 0 804640 1722200 EALLELLR TLVQRYKADLATDQKEALLELLRLQPHPQL DLATDQKEALLELLRLQPHPQLSPEIRREL K E A L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 Q13895 Q13895 399 406 BYSL Bystin yes yes 2 7.0318E-06 155.51 By matching By MS/MS 4.5 1.12 1 1 1 1 1 3 7256000 0 246690 7009300 2469 1276 2575 10470;10471;10472;10473 8543;8544 8544 2 0 105170 1045300 EALLGVQEDVDEYVK ELHYPLGERRSDYDREALLGVQEDVDEYVK EALLGVQEDVDEYVKLGHEEQQKRLQAIIK R E A V K L 1 0 0 2 0 1 3 1 0 0 2 1 0 0 0 0 0 0 1 3 0 0 15 0 1705.841 Q14257 Q14257 42 56 RCN2 Reticulocalbin-2 yes yes 2 0.00030018 132.76 By MS/MS 5 0 1 1 18672000 0 0 18672000 2470 1296 2576 10474 8545 8545 1 0 0 2604300 EALQDVEDENQ LWTSDMQGDGEEQNKEALQDVEDENQ____ EQNKEALQDVEDENQ_______________ K E A N Q - 1 0 1 2 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1288.5419 P62258 P62258 245 255 YWHAE 14-3-3 protein epsilon yes yes 2 0.026309 80.684 By matching By MS/MS 6 0 2 1 1 18194000 0 3416300 14778000 2471 1011 2577 10475;10476 8546 8546 1 0 1182600 2210900 EALQGVGDMGR LVMGVTSESWRSFFKEALQGVGDMGRAYWD SFFKEALQGVGDMGRAYWDIMISNHQNSNR K E A G R A 1 1 0 1 0 1 1 3 0 0 1 0 1 0 0 0 0 0 0 1 0 0 11 0 1131.5343 P35542 P35542 27 37 SAA4 Serum amyloid A-4 protein yes yes 2 0.003081 106.2 By MS/MS By matching 8.8 1.17 1 1 1 2 4 1 116610000 104960000 0 11659000 2472 751 2578 10477;10478;10479;10480;10481 8547 8547 1 168110000 0 25499000 EALTYDGALLGDR KGFCYVEFDEVDSLKEALTYDGALLGDRSL LKEALTYDGALLGDRSLRVDIAEGRKQDKG K E A D R S 2 1 0 2 0 0 1 2 0 0 3 0 0 0 0 0 1 0 1 0 0 0 13 0 1392.6885 Q15056 Q15056 97 109 EIF4H Eukaryotic translation initiation factor 4H yes yes 2 0.00092966 115.57 By matching By MS/MS 6.33 0.471 2 1 1 2 31078000 1531400 0 29546000 2473 1340 2579 10482;10483;10484 8548 8548 1 2039100 0 5126800 EAMEDGEIDGNK GFVDFNSEEDAKAAKEAMEDGEIDGNKVTL AAKEAMEDGEIDGNKVTLDWAKPKGEGGFG K E A N K V 1 0 1 2 0 0 3 2 0 1 0 1 1 0 0 0 0 0 0 0 0 0 12 0 1306.5347 P19338 P19338 628 639 NCL Nucleolin yes yes 2 6.0495E-12 177.06 By MS/MS By MS/MS 3.36 1.23 1 2 5 4 1 1 4 10 129960000 0 22966000 106990000 2474 604 2580;2581 10485;10486;10487;10488;10489;10490;10491;10492;10493;10494;10495;10496;10497;10498 8549;8550;8551;8552;8553;8554;8555;8556;8557;8558 8558 264 9 0 10130000 19096000 EAMEDGEIDGNKVTLDWAKPK GFVDFNSEEDAKAAKEAMEDGEIDGNKVTL EIDGNKVTLDWAKPKGEGGFGGRGGGRGGF K E A P K G 2 0 1 3 0 0 3 2 0 1 1 3 1 0 1 0 1 1 0 1 0 0 21 2 2345.1209 P19338 P19338 628 648 NCL Nucleolin yes yes 3;4 2.9761E-08 107.45 By MS/MS By MS/MS 2.62 1.08 1 7 2 2 1 4 9 200390000 0 26873000 173520000 2475 604 2582;2583 10499;10500;10501;10502;10503;10504;10505;10506;10507;10508;10509;10510;10511 8559;8560;8561;8562;8563;8564;8565;8566;8567 8562 264 9 0 12061000 37097000 EAMEHPYFYTVVK DKLLRYDHQSRLTAREAMEHPYFYTVVKDQ AREAMEHPYFYTVVKDQARMGSSSMPGGST R E A V K D 1 0 0 0 0 0 2 0 1 0 0 1 1 1 1 0 1 0 2 2 0 0 13 0 1612.7596 P68400;Q8NEV1 P68400 317 329 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 9.0347E-34 208.15 By MS/MS 5 0 1 1 34160000 0 0 34160000 2476 1080 2584 10512 8568 8568 1 0 0 4764800 EAMMGLAQLYK FVRERTLDKRWRVRKEAMMGLAQLYKKYCL RVRKEAMMGLAQLYKKYCLHGEAGKEAAEK K E A Y K K 2 0 0 0 0 1 1 1 0 0 2 1 2 0 0 0 0 0 1 0 0 0 11 0 1253.6148 Q29RF7 Q29RF7 417 427 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.0019023 109.21 By matching By MS/MS 1.5 0.5 1 1 1 1 13192000 0 3266000 9926300 2477 1405 2585 10513;10514 8569 8569 1 0 1596400 2243100 EAMNDPLLER AKTILKYMTDGMLLREAMNDPLLERYGVII GMLLREAMNDPLLERYGVIILDEAHERTLA R E A E R Y 1 1 1 1 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 10 0 1186.5652 O43143 O43143 244 253 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 9.0096E-06 113.66 By MS/MS 3 0 1 1 0 0 0 0 2478 186 2586 10515 8570 8570 1 0 0 0 EAMVQAEEAAAEITR YETGEIPRKNLDVMKEAMVQAEEAAAEITR EAMVQAEEAAAEITRKLEKQEKKRLKKEKK K E A T R K 5 1 0 0 0 1 4 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 15 0 1617.7668 O00567 O00567 423 437 NOP56 Nucleolar protein 56 yes yes 2 2.0974E-58 231.92 By MS/MS By MS/MS By MS/MS 3.33 1.41 1 1 4 1 1 1 1 1 7 92413000 4624200 5912000 81877000 2479 130 2587;2588 10516;10517;10518;10519;10520;10521;10522;10523;10524 8571;8572;8573;8574;8575;8576;8577;8578 8576 67 7 5335300 2520300 15121000 EANALAAGHPAQAVAINAR RDLEAIAARVGELTREANALAAGHPAQAVA LAAGHPAQAVAINARLREVQTGWEDLRATM R E A A R L 8 1 2 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 0 1 0 0 19 0 1843.9653 O15020 O15020 1021 1039 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.00010891 84.375 By MS/MS 1 0 1 1 10813000 0 10813000 0 2480 160 2589 10525 8579 8579 1 0 5285500 0 EANDSDVQPSGAQR ______________________________ KEANDSDVQPSGAQRAEAFVRAFLKRSTPR K E A Q R A 2 1 1 2 0 2 1 1 0 0 0 0 0 0 1 2 0 0 0 1 0 0 14 0 1472.6492 O95707 O95707 13 26 POP4 Ribonuclease P protein subunit p29 yes yes 2 0.018984 74.944 By MS/MS 7 0 1 1 979680 0 0 979680 2481 335 2590 10526 8580 8580 1 0 0 173840 EANELQQWINEK KGMLEKSCKKFMLFREANELQQWINEKEAA LFREANELQQWINEKEAALTSEEVGADLEQ R E A E K E 1 0 2 0 0 2 3 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 12 0 1500.7209 Q13813 Q13813 1099 1110 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 9.874E-73 242.88 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 52341000 6011000 20234000 26096000 2482 1268 2591 10527;10528;10529;10530 8581;8582 8581 2 6011000 9747800 5622700 EANFTVSSMHGDMPQK CNTKRKVDWLTEKMREANFTVSSMHGDMPQ ANFTVSSMHGDMPQKERESIMKEFRSGASR R E A Q K E 1 0 1 1 0 1 1 1 1 0 0 1 2 1 1 2 1 0 0 1 0 0 16 0 1777.7764 P38919 P38919 299 314 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2;3 1.7849E-74 245.46 By MS/MS By MS/MS 4.9 1.04 1 2 5 1 1 4 6 386490000 0 115160000 271330000 2483 775 2592;2593 10531;10532;10533;10534;10535;10536;10537;10538;10539;10540 8583;8584;8585;8586;8587;8588 8585 383 6 0 30050000 39033000 EANGLGPQGFPELK ______________________________ MEANGLGPQGFPELKNDTFLRAAWGEETDY M E A L K N 1 0 1 0 0 1 2 3 0 0 2 1 0 1 2 0 0 0 0 0 0 0 14 0 1455.7358 P06132 P06132 2 15 UROD Uroporphyrinogen decarboxylase yes yes 2 0.0009114 110.76 By MS/MS By MS/MS By matching 1.75 0.433 1 3 2 1 1 64705000 45844000 11628000 7233000 2484 438 2594 10541;10542;10543;10544 8589;8590 8589 2 54625000 5236400 1634500 EANMPLPGYK SNGFICDYELHELFKEANMPLPGYKVREII HELFKEANMPLPGYKVREIIQKLMLDGDRN K E A Y K V 1 0 1 0 0 0 1 1 0 0 1 1 1 0 2 0 0 0 1 0 0 0 10 0 1118.543 P13797 P13797 43 52 PLS3 Plastin-3 yes yes 2 0.0067625 94.114 By MS/MS 10 0 1 1 5744700 0 0 5744700 2485 551 2595 10545 8591 8591 1 0 0 12564000 EANNFLWPFK EDLIHEIYTVGKRFKEANNFLWPFKLSSPR GKRFKEANNFLWPFKLSSPRGGMKKKTTHF K E A F K L 1 0 2 0 0 0 1 0 0 0 1 1 0 2 1 0 0 1 0 0 0 0 10 0 1264.6241 P18124 P18124 203 212 RPL7 60S ribosomal protein L7 yes yes 2 0.00045143 127.02 By MS/MS By MS/MS 4.25 1.98 1 1 1 1 1 2 1 1 7 372500000 0 44081000 328420000 2486 594 2596 10546;10547;10548;10549;10550;10551;10552;10553 8592;8593;8594;8595;8596;8597;8598 8593 6 0 15259000 50106000 EAPAPVAHPAPGGPEEQWQR DARKKVPAAPITVSKEAPAPVAHPAPGGPE VAHPAPGGPEEQWQRAIHERGEAVCPTCNV K E A Q R A 4 1 0 0 0 2 3 2 1 0 0 0 0 0 5 0 0 1 0 1 0 0 20 0 2123.0185 Q96KM6 Q96KM6 483 502 ZNF512B Zinc finger protein 512B yes yes 3 1.1575E-05 83.423 By MS/MS 2 0 1 1 5316200 0 0 5316200 2487 1804 2597 10554 8599 8599 1 0 0 1201300 EAPASVVPFVR SPVRVKREFEPASAREAPASVVPFVRVKRE ASAREAPASVVPFVRVKREREVDEDSEPER R E A V R V 2 1 0 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 3 0 0 11 0 1170.6397 Q53GS9 Q53GS9 61 71 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2 0.0089442 93.267 By MS/MS By MS/MS 3 0 2 1 1 40288000 0 11691000 28597000 2488 1426 2598 10555;10556 8600;8601 8601 2 0 4983800 5546500 EAPEELLAYEGVR HCHEAQAVLGVLLRREAPEELLAYEGVRAA RREAPEELLAYEGVRAALEALLPYTERHFQ R E A V R A 2 1 0 0 0 0 4 1 0 0 2 0 0 0 1 0 0 0 1 1 0 0 13 0 1474.7304 Q12788 Q12788 742 754 TBL3 Transducin beta-like protein 3 yes yes 2 0.00092052 78.653 By MS/MS 1 0 1 1 0 0 0 0 2489 1197 2599 10557 8602 8602 1 0 0 0 EAPPMEKPEVVK RKQHSLLKRLRKAKKEAPPMEKPEVVKTHL AKKEAPPMEKPEVVKTHLRDMIILPEMVGS K E A V K T 1 0 0 0 0 0 3 0 0 0 0 2 1 0 3 0 0 0 0 2 0 0 12 1 1352.701 P62841 P62841 66 77 RPS15 40S ribosomal protein S15 yes yes 3 0.023878 62.732 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 109690000 0 20166000 89528000 2490 1037 2600 10558;10559;10560 8603;8604 8603 2 0 11579000 15192000 EAQAALAEAQEDLESER EDEGGARAQLLKSLREAQAALAEAQEDLES QAALAEAQEDLESERVARTKAEKQRRDLGE R E A E R V 5 1 0 1 0 2 5 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 17 0 1858.8545 Q7Z406 Q7Z406 1132 1148 MYH14 Myosin-14 yes yes 2 1.6678E-06 155.98 By MS/MS 1 0 1 1 2134800 0 2134800 0 2491 1531 2601 10561 8605 8605 1 0 1043500 0 EAQAELEDYRK DELNKQVSELSQLYKEAQAELEDYRKRKSL QLYKEAQAELEDYRKRKSLEDVTAEYIHKA K E A R K R 2 1 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 11 1 1350.6416 Q9P0K7 Q9P0K7 654 664 RAI14 Ankycorbin yes yes 3 0.054966 42.976 By MS/MS 2 0 1 1 2088700 0 2088700 0 2492 2115 2602 10562 8606 8606 1 0 940570 0 EAQAVPATLPELEATK QGAEEVLRAHEEQLKEAQAVPATLPELEAT AQAVPATLPELEATKASLKKLRAQAEAQQP K E A T K A 4 0 0 0 0 1 3 0 0 0 2 1 0 0 2 0 2 0 0 1 0 0 16 0 1666.8778 Q15149 Q15149 1251 1266 PLEC Plectin yes yes 2 0.0072315 76.588 By MS/MS By MS/MS 1 0 2 1 1 23093000 0 10949000 12144000 2493 1348 2603 10563;10564 8607;8608 8607 2 0 5351600 2616700 EAQELSQNSAIK SGHQGRTIIFCETKKEAQELSQNSAIKQDA TKKEAQELSQNSAIKQDAQSLHGDIPQKQR K E A I K Q 2 0 1 0 0 2 2 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 12 0 1316.6572 Q9NR30 Q9NR30 450 461 DDX21 Nucleolar RNA helicase 2 yes yes 2 7.0554E-05 142.36 By matching By MS/MS 1.67 0.471 1 2 2 1 24030000 7220300 16809000 0 2494 2038 2604 10565;10566;10567 8609 8609 1 8423800 7569400 0 EAQTLDSQIQETSI GLNGHPTLSGGGDQREAQTLDSQIQETSI_ REAQTLDSQIQETSI_______________ R E A S I - 1 0 0 1 0 3 2 0 0 2 1 0 0 0 0 2 2 0 0 0 0 0 14 0 1561.7471 P27816 P27816 1139 1152 MAP4 Microtubule-associated protein 4 yes yes 2 0.014083 77.379 By matching By MS/MS By MS/MS 2.17 1.07 2 2 1 1 1 1 4 31497000 1504200 4194300 25799000 2495 683 2605 10568;10569;10570;10571;10572;10573 8610;8611;8612 8610 3 1504200 1888800 5407000 EAQTSFLHLGYLPNQLFR DILAPTVQELAALEKEAQTSFLHLGYLPNQ TSFLHLGYLPNQLFRTF_____________ K E A F R T 1 1 1 0 0 2 1 1 1 0 4 0 0 2 1 1 1 0 1 0 0 0 18 0 2133.1007 Q92499 Q92499 721 738 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2;3 5.118E-180 297.05 By MS/MS By MS/MS 2.5 0.866 1 3 3 1 2 6 104430000 0 22137000 82294000 2496 1705 2606 10574;10575;10576;10577;10578;10579;10580;10581 8613;8614;8615;8616;8617 8617 5 0 9638900 16397000 EASDPFSLNELLDELSR KELVGEFLQFVQLDKEASDPFSLNELLDEL SDPFSLNELLDELSRKQKEELWQRLKNLLT K E A S R K 1 1 1 2 0 0 3 0 0 0 4 0 0 1 1 3 0 0 0 0 0 0 17 0 1933.9269 Q86XI2 Q86XI2 28 44 NCAPG2 Condensin-2 complex subunit G2 yes yes 2 1.1589E-06 158.42 By MS/MS 2 0 1 1 4444300 0 0 4444300 2497 1558 2607 10582 8618 8618 1 0 0 1004300 EASDPQPEEADGGLK DPRNKISFKFDHLRKEASDPQPEEADGGLK EASDPQPEEADGGLKSWRESCDSALRAYVK K E A L K S 2 0 0 2 0 1 3 2 0 0 1 1 0 0 2 1 0 0 0 0 0 0 15 0 1541.6845 P52907 P52907 104 118 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2 0.030325 65.179 By MS/MS 6 0 1 1 9648000 0 9648000 0 2498 914 2608 10583 8619 8619 1 0 3339800 0 EASMVITESPAALQLR VIAAEGEMNASRALKEASMVITESPAALQL ASMVITESPAALQLRYLQTLTTIAAEKNST K E A L R Y 3 1 0 0 0 1 2 0 0 1 2 0 1 0 1 2 1 0 0 1 0 0 16 0 1714.8924 P27105 P27105 236 251 STOM Erythrocyte band 7 integral membrane protein yes yes 2 2.4214E-08 167.3 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 12069000 0 3047400 9022000 2499 675 2609 10584;10585;10586 8620;8621 8621 2 0 1386800 1600900 EASYSLIR EDVLPLAFTRLCEPKEASYSLIRKYVSQYY TRLCEPKEASYSLIRKYVSQYYPKLRVDIR K E A I R K 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 0 8 0 937.4869 Q5SSJ5 Q5SSJ5 275 282 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 4.0489E-44 173.59 By MS/MS 3.5 0.5 1 1 2 4651500 0 0 4651500 2500 1445 2610 10587;10588 8622;8623 8622 2 0 0 759740 EATAQKPTGSVGSTVTTPPPLVR KLVLLKKLRQSQIQKEATAQKPTGSVGSTV GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS K E A V R G 2 1 0 0 0 1 1 2 0 0 1 1 0 0 4 2 5 0 0 3 0 0 23 1 2293.2278 Q86YP4 Q86YP4 173 195 GATAD2A Transcriptional repressor p66-alpha yes yes 3 1.0546E-20 132.83 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 23723000 0 12738000 10985000 2501 1563 2611 10589;10590;10591 8624;8625;8626 8624 3 0 5149200 2130600 EATDAIGHLDR IVMPDGSGIYDPCEKEATDAIGHLDRQQRE PCEKEATDAIGHLDRQQREDITQSAQHALR K E A D R Q 2 1 0 2 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1196.5786 Q12906 Q12906 298 308 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 5.6398E-19 185.6 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 67531000 0 15514000 52018000 2502 1211 2612 10592;10593;10594 8627;8628;8629 8628 3 0 6986000 10488000 EATEQEIR ______________________________ FIGNLPREATEQEIRSLFEQYGKVLECDII R E A I R S 1 1 0 0 0 1 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 8 0 974.46689 Q9BWF3;Q9BQ04 Q9BWF3 12 19 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.0017273 111.82 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 5776100 0 5171400 604670 2503 1924 2613 10595;10596;10597 8630;8631;8632 8631 3 0 1643300 90465 EATTEFSVDAR VQCYGPGIEGQGVFREATTEFSVDARALTQ GVFREATTEFSVDARALTQTGGPHVKARVA R E A A R A 2 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 11 0 1224.5622 P21333 P21333 1273 1283 FLNA Filamin-A yes yes 2 0.0065358 97.965 By matching By MS/MS 1 0 2 1 1 28099000 1190300 26909000 0 2504 623 2614 10598;10599 8633 8633 1 1190300 13153000 0 EATWTMSNITAGR VFPSLLTNPKTNIQKEATWTMSNITAGRQD QKEATWTMSNITAGRQDQIQQVVNHGLVPF K E A G R Q 2 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 3 1 0 0 0 0 13 0 1436.6718 P52292 P52292 354 366 KPNA2 Importin subunit alpha-1 yes yes 2 2.9895E-05 160.53 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 85533000 0 41174000 44359000 2505 903 2615 10600;10601;10602;10603 8634;8635;8636 8634 3 0 13784000 7483400 EAVGDLLDAFK SVPKRRRKIKELNKKEAVGDLLDAFKEANP LNKKEAVGDLLDAFKEANPAVPEVENQPPA K E A F K E 2 0 0 2 0 0 1 1 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1176.6027 Q04637 Q04637 525 535 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 2 0.00057501 118.71 By MS/MS 1.5 0.5 1 1 2 4901100 0 4901100 0 2506 1159 2616 10604;10605 8637;8638 8637 2 0 2313800 0 EAVLLLKK PLVVEDKVEGYKKTKEAVLLLKKLKAWNDI EGYKKTKEAVLLLKKLKAWNDIKKVYASQR K E A K K L 1 0 0 0 0 0 1 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 8 1 912.6008 P36578 P36578 166 173 RPL4 60S ribosomal protein L4 yes yes 2 0.065739 76.035 By MS/MS 5 0 1 1 2741600 0 2741600 0 2507 762 2617 10606 8639 8639 1 0 706700 0 EAVSSAFFSLLQTLSTQFK ETKHPFSFPLENQAREAVSSAFFSLLQTLS SAFFSLLQTLSTQFKQAPGQTQGGQPWTYH R E A F K Q 2 0 0 0 0 2 1 0 0 0 3 1 0 3 0 4 2 0 0 1 0 0 19 0 2103.0888 Q9BQG0 Q9BQG0 511 529 MYBBP1A Myb-binding protein 1A yes yes 2;3 1.2297E-156 283.83 By MS/MS 1.8 0.748 2 2 1 5 27197000 0 0 27197000 2508 1885 2618 10607;10608;10609;10610;10611 8640;8641;8642;8643 8642 4 0 0 6111400 EAVVNTQELLDLLVK NKWNTALIGLMTYFREAVVNTQELLDLLVK EAVVNTQELLDLLVKCENKIQTRIKIGLNS R E A V K C 1 0 1 1 0 1 2 0 0 0 4 1 0 0 0 0 1 0 0 3 0 0 15 0 1682.9455 Q6P2Q9 Q6P2Q9 1276 1290 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 1.3526E-07 170.52 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 43146000 0 9893200 33253000 2509 1490 2619 10612;10613;10614;10615;10616 8644;8645;8646;8647 8646 4 0 4835600 7171300 EAVVQEPER EAQINTAKRLLEKGKEAVVQEPERSWFQTK LLEKGKEAVVQEPERSWFQTKEERKKEKIA K E A E R S 1 1 0 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 9 0 1055.5247 Q96GQ7 Q96GQ7 642 650 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 7.1794E-05 145.63 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 17678000 0 7494400 10184000 2510 1793 2620 10617;10618 8648;8649 8648 2 0 3374900 1975100 EAVVWEAASMSQK GSRSELRRFQDGAIREAVVWEAASMSQKRL IREAVVWEAASMSQKRLIPHQVVTHLLALH R E A Q K R 3 0 0 0 0 1 2 0 0 0 0 1 1 0 0 2 0 1 0 2 0 0 13 0 1434.6813 Q9H6R4 Q9H6R4 599 611 NOL6 Nucleolar protein 6 yes yes 2 0.0034144 104.82 By MS/MS 2 0 1 1 9096700 0 0 9096700 2511 1988 2621 10619 8650 8650 1 0 0 2055700 EAVVYLAHTHDGAR YAPPKLRSEMIEAIREAVVYLAHTHDGARV REAVVYLAHTHDGARVAMHCLWHGTPKDRK R E A A R V 3 1 0 1 0 0 1 1 2 0 1 0 0 0 0 0 1 0 1 2 0 0 14 0 1537.7637 Q15397 Q15397 353 366 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 3 0.00040063 101.35 By MS/MS 3 0 1 1 27367000 0 0 27367000 2512 1362 2622 10620 8651 8651 1 0 0 5307900 EAYMGNVLQGGEGQAPTR QGAIEKAGIPKEEVKEAYMGNVLQGGEGQA MGNVLQGGEGQAPTRQAVLGAGLPISTPCT K E A T R Q 2 1 1 0 0 2 2 4 0 0 1 0 1 0 1 0 1 0 1 1 0 0 18 0 1876.8738 P24752 P24752 88 105 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 1.3638E-08 131.32 By MS/MS 5 0 1 1 2611300 0 2611300 0 2513 651 2623 10621 8652 8652 1 0 673120 0 EAYPDHTQFEK NCKEPGIAGLMKIVKEAYPDHTQFEKNNPH KIVKEAYPDHTQFEKNNPHYDPSSKEDNPK K E A E K N 1 0 0 1 0 1 2 0 1 0 0 1 0 1 1 0 1 0 1 0 0 0 11 0 1363.6044 Q9P016 Q9P016 132 142 THYN1 Thymocyte nuclear protein 1 yes yes 2;3 0.00032809 128.6 By matching By MS/MS 6.25 0.433 3 1 1 3 35809000 0 794140 35015000 2514 2111 2624 10622;10623;10624;10625 8653;8654;8655 8654 3 0 274910 5493900 EAYPGDVFYLHSR AYRQMSLLLRRPPGREAYPGDVFYLHSRLL GREAYPGDVFYLHSRLLERAAKMNDAFGGG R E A S R L 1 1 0 1 0 0 1 1 1 0 1 0 0 1 1 1 0 0 2 1 0 0 13 0 1552.731 P25705 P25705 335 347 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2;3 7.9451E-05 123.26 By matching By MS/MS By MS/MS 4.44 1.26 2 4 1 1 1 2 1 6 39862000 2887700 6288600 30686000 2515 661 2625 10626;10627;10628;10629;10630;10631;10632;10633;10634 8656;8657;8658 8657 3 2569600 2087000 5024600 ECADLWPR KGEMKGSAITGPVAKECADLWPRIASNAGS ITGPVAKECADLWPRIASNAGSIA______ K E C P R I 1 1 0 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 8 0 1045.4651 P62829 P62829 124 131 RPL23 60S ribosomal protein L23 yes yes 2 0.026661 79.116 By MS/MS 8 0 1 1 5033200 0 0 5033200 2516 1036 2626 10635 8659 8659 1 0 0 771630 ECCEKPLLEK KYICENQDSISSKLKECCEKPLLEKSHCIA SSKLKECCEKPLLEKSHCIAEVENDEMPAD K E C E K S 0 0 0 0 2 0 3 0 0 0 2 2 0 0 1 0 0 0 0 0 0 0 10 1 1304.6105 CON__P02768-1;P02768 CON__P02768-1 301 310 ALB Serum albumin yes no 2;3 1.9875E-38 215.93 By MS/MS 9 0 2 2 15950000 15950000 0 0 + 2517 44 2627 10636;10637 8660;8661;8662 8662 3 8952700 0 0 ECLPLIIFLR GVFAPRPSTGPHKLRECLPLIIFLRNRLKY PHKLRECLPLIIFLRNRLKYALTGDEVKKI R E C L R N 0 1 0 0 1 0 1 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 10 0 1272.7264 P62701 P62701 40 49 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 3.5719E-16 174.73 By matching By MS/MS 4.25 1.98 1 1 1 1 1 2 1 6 2 18513000 0 3679300 14834000 2518 1029 2628 10638;10639;10640;10641;10642;10643;10644;10645 8663;8664;8665 8664 3 0 1485300 2367900 EDAANNYAR TYRQLFHPEQLITGKEDAANNYARGHYTIG QLITGKEDAANNYARGHYTIGKEIIDLVLD K E D A R G 3 1 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1022.4417 A6NHL2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3 P68363 97 105 TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2 2.6001E-11 170.73 By MS/MS By MS/MS 4.62 1.32 2 2 2 1 1 6 2 34288000 0 31491000 2796900 2519 1077;1515;1883;1078;13 2629 10646;10647;10648;10649;10650;10651;10652;10653 8666;8667;8668;8669;8670;8671;8672;8673;8674;8675;8676;8677;8678 8670 12 0 8926200 493000 EDAIEHFMK GTVIGSNKLEQMPSKEDAIEHFMKLYEEKT EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF K E D M K L 1 0 0 1 0 0 2 0 1 1 0 1 1 1 0 0 0 0 0 0 0 0 9 0 1118.5066 P09874 P09874 608 616 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 4.078E-07 155.88 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 51540000 0 5426500 46113000 2520 492 2630 10654;10655;10656 8679;8680 8680 2 0 2443600 10316000 EDAIWNLLR RVPSHAVVARSVNGKEDAIWNLLRQAQEKF RSVNGKEDAIWNLLRQAQEKFGKDKSPKFQ K E D L R Q 1 1 1 1 0 0 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 0 9 0 1128.5928 P02788 P02788 283 291 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 8.0016E-06 152.47 By MS/MS 7 2 1 1 1 1 1 1 1 7 28083000 28083000 0 0 2521 400 2631 10657;10658;10659;10660;10661;10662;10663 8681;8682;8683 8681 3 22771000 0 0 EDAMAMVDHCLK LMRMKSQAFIEMETREDAMAMVDHCLKKAL ETREDAMAMVDHCLKKALWFQGRCVKVDLS R E D L K K 2 0 0 2 1 0 1 0 1 0 1 1 2 0 0 0 0 0 0 1 0 0 12 0 1418.5992 P43243 P43243 543 554 MATR3 Matrin-3 yes yes 2 0.052015 72.59 By MS/MS 2 0 1 1 4077900 0 0 4077900 2522 812 2632 10664 8684 8684 1 0 0 921530 EDDPGEAASMSMFSDFLQSFLK HSITEDVTISAVMLREDDPGEAASMSMFSD ASMSMFSDFLQSFLKHSSSTVFDLVEEYEN R E D L K H 2 0 0 3 0 1 2 1 0 0 2 1 2 3 1 4 0 0 0 0 0 0 22 0 2451.061 P57740 P57740 143 164 NUP107 Nuclear pore complex protein Nup107 yes yes 3 0.00099197 60.602 By MS/MS 2 0 1 1 1119800 0 0 1119800 2523 956 2633 10665 8685 8685 1 0 0 253060 EDEIPVLKDELIHELK LEKTLAGLPLLVAYKEDEIPVLKDELIHEL DEIPVLKDELIHELKQTLNAIKLEEKGVYV K E D L K Q 0 0 0 2 0 0 4 0 1 2 3 2 0 0 1 0 0 0 0 1 0 0 16 1 1919.0252 O60841 O60841 953 968 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.040931 42.314 By MS/MS 2 0 1 1 1895800 0 0 1895800 2524 236 2634 10666 8686 8686 1 0 0 428420 EDEQQQALQDIASR QEVDEFLLRLSKLTKEDEQQQALQDIASRC KEDEQQQALQDIASRCTANDLKCIIRLIKH K E D S R C 2 1 0 2 0 4 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 14 0 1629.7594 P49916 P49916 390 403 LIG3 DNA ligase 3 yes yes 2 4.1755E-45 221.09 By MS/MS 2 0 1 1 15551000 0 0 15551000 2525 874 2635 10667 8687 8687 1 0 0 3514200 EDGLAQQQTQLNLR SKADEASELACPTPKEDGLAQQQTQLNLRS KEDGLAQQQTQLNLRSLLVNPEGPTLMRLN K E D L R S 1 1 1 1 0 4 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 14 0 1612.8169 P49327 P49327 2207 2220 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 6.2197E-34 207.34 By MS/MS 1.5 0.5 1 1 2 6129200 0 6129200 0 2526 853 2636 10668;10669 8688 8688 1 0 2903000 0 EDGMVPFVFVGTK VRVRIEGDNENKLPREDGMVPFVFVGTKES PREDGMVPFVFVGTKESIGNVQVLLEYHIA R E D T K E 0 0 0 1 0 0 1 2 0 0 0 1 1 2 1 0 1 0 0 3 0 0 13 0 1424.701 P51114 P51114 329 341 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 2 0.010224 87.942 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 20899000 0 3756000 17143000 2527 887 2637 10670;10671;10672 8689;8690 8690 2 0 1601200 3350000 EDGNEEDKENQGDETQGQQPPQR RPRFRRGPPRQRQPREDGNEEDKENQGDET ENQGDETQGQQPPQRRYRRNFNYRRRRPEN R E D Q R R 0 1 2 3 0 5 5 3 0 0 0 1 0 0 2 0 1 0 0 0 0 0 23 1 2627.0968 P67809 P67809 257 279 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 3;4 4.7169E-65 218.72 By MS/MS By MS/MS 4.2 1.33 1 1 3 4 1 6 4 117750000 0 64186000 53563000 2528 1072 2638 10673;10674;10675;10676;10677;10678;10679;10680;10681;10682 8691;8692;8693;8694;8695;8696;8697;8698;8699;8700;8701;8702;8703 8700 13 0 17484000 7633500 EDGNEEDKENQGDETQGQQPPQRR RPRFRRGPPRQRQPREDGNEEDKENQGDET NQGDETQGQQPPQRRYRRNFNYRRRRPENP R E D R R Y 0 2 2 3 0 5 5 3 0 0 0 1 0 0 2 0 1 0 0 0 0 0 24 2 2783.1979 P67809 P67809 257 280 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 3;4 2.3046E-07 79.568 By MS/MS By MS/MS 4.6 1.36 1 3 1 4 1 36243000 0 30722000 5521400 2529 1072 2639 10683;10684;10685;10686;10687 8704;8705;8706;8707;8708;8709 8706 6 0 8636800 770130 EDGNILGHK DTLVNRIELKGIDFKEDGNILGHKLEYNYN KGIDFKEDGNILGHKLEYNYNSHNVYIMAD K E D H K L 0 0 1 1 0 0 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 981.48796 CON__Q9U6Y5 CON__Q9U6Y5 132 140 yes yes 2 0.035505 75.692 By MS/MS 5 0 1 1 12086000 0 12086000 0 + 2530 101 2640 10688 8710 8710 1 0 3115300 0 EDGSGDRGDGPFR CDISLQFFLPFSLGKEDGSGDRGDGPFRLG GKEDGSGDRGDGPFRLGGHGPSFPLKGITE K E D F R L 0 2 0 3 0 0 1 4 0 0 0 0 0 1 1 1 0 0 0 0 0 0 13 1 1363.5753 P13010 P13010 172 184 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.0025882 128.27 By matching By MS/MS 2.67 0.471 1 2 1 2 17670000 0 3022000 14648000 2531 542 2641 10689;10690;10691 8711;8712 8712 2 0 1360900 2841000 EDINAIEMEEDKR RFPVAPLIPYPLITKEDINAIEMEEDKRDL TKEDINAIEMEEDKRDLISREISKFRDTHK K E D K R D 1 1 1 2 0 0 4 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 13 1 1590.7196 P49756 P49756 262 274 RBM25 RNA-binding protein 25 yes yes 2;3 1.2476E-33 210.08 By MS/MS 1.5 0.5 2 2 4 49980000 0 0 49980000 2532 866 2642 10692;10693;10694;10695 8713;8714 8714 2 0 0 11198000 EDITQSAQHALR KEATDAIGHLDRQQREDITQSAQHALRLAA QQREDITQSAQHALRLAAFGQLHKVLGMDP R E D L R L 2 1 0 1 0 2 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 12 0 1367.6793 Q12906 Q12906 312 323 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 1.954E-58 234.2 By MS/MS By MS/MS By MS/MS 3.06 1.51 2 6 3 3 1 2 2 9 6 479340000 39832000 206180000 233330000 2533 1211 2643 10696;10697;10698;10699;10700;10701;10702;10703;10704;10705;10706;10707;10708;10709;10710;10711;10712 8715;8716;8717;8718;8719;8720;8721;8722;8723;8724;8725;8726 8720 12 47992000 88073000 49792000 EDIYSGGGGGGSR PIQGHRVEVKKAVPKEDIYSGGGGGGSRSS PKEDIYSGGGGGGSRSSRGGRGGRGRGGGR K E D S R S 0 1 0 1 0 0 1 6 0 1 0 0 0 0 0 2 0 0 1 0 0 0 13 0 1210.5214 Q13151 Q13151 177 189 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.0065196 96.171 By MS/MS 6 0 1 1 10809000 0 10809000 0 2534 1225 2644 10713 8727 8727 1 0 3741600 0 EDLAAFVEELDKVESQER EVNDLKRKSPSDLWKEDLAAFVEELDKVES AAFVEELDKVESQEREDVLAGMSGKAIKGK K E D E R E 2 1 0 2 0 1 5 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 18 1 2106.0117 Q02880 Q02880 1187 1204 TOP2B DNA topoisomerase 2-beta yes yes 3 3.2803E-09 129.88 By MS/MS 1 0 1 1 5690700 0 0 5690700 2535 1150 2645 10714 8728 8728 1 0 0 1226100 EDLATFIEELEAVEAK ELDTLKRKSPSDLWKEDLATFIEELEAVEA DLATFIEELEAVEAKEKQDEQVGLPGKGGK K E D A K E 3 0 0 1 0 0 5 0 0 1 2 1 0 1 0 0 1 0 0 1 0 0 16 0 1805.8935 P11388 P11388 1169 1184 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.3723E-05 142.91 By MS/MS 1.5 0.5 2 2 4 30889000 0 0 30889000 2536 524 2646 10715;10716;10717;10718 8729;8730;8731;8732 8732 4 0 0 6780800 EDLMGLAIGTHGANIQQAR SKQLAAAFQEEFTVREDLMGLAIGTHGANI GLAIGTHGANIQQARKVPGVTAIELGEETC R E D A R K 3 1 1 1 0 2 1 3 1 2 2 0 1 0 0 0 1 0 0 0 0 0 19 0 1994.0004 P51116;Q06787 P51116 237 255 FXR2;FMR1 Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation protein 1 no no 2;3 1.4721E-96 255.16 By MS/MS By MS/MS 2.88 0.781 3 3 2 3 5 81902000 0 28078000 53824000 2537 888;1172 2647 10719;10720;10721;10722;10723;10724;10725;10726 8733;8734;8735;8736;8737;8738 8738 6 0 11791000 10621000 EDLMGLAIGTHGSNIQQAR TKQLAAAFHEEFVVREDLMGLAIGTHGSNI GLAIGTHGSNIQQARKVPGVTAIELDEDTG R E D A R K 2 1 1 1 0 2 1 3 1 2 2 0 1 0 0 1 1 0 0 0 0 0 19 0 2009.9953 P51114 P51114 227 245 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 2;3 9.0427E-97 257.02 By MS/MS By MS/MS 2.78 0.916 1 2 4 2 4 5 109880000 0 30693000 79191000 2538 887 2648;2649 10727;10728;10729;10730;10731;10732;10733;10734;10735 8739;8740;8741;8742;8743 8742 420 5 0 12811000 15459000 EDLQELNDR STPLSPTRITRLQEKEDLQELNDRLAVYID TRLQEKEDLQELNDRLAVYIDRVRSLETEN K E D D R L 0 1 1 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1130.5204 P02545 P02545 33 41 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 3.1644E-05 149.94 By matching By MS/MS 3.33 0.471 2 1 1 2 44469000 0 1715600 42753000 2539 387 2650 10736;10737;10738 8744;8745 8744 2 0 731370 8133100 EDLQLDKPASGVK IRFVIKKHELLNSTREDLQLDKPASGVKEE TREDLQLDKPASGVKEEWYARITKLRKMVD R E D V K E 1 0 0 2 0 1 1 1 0 0 2 2 0 0 1 1 0 0 0 1 0 0 13 1 1398.7355 P78347 P78347 444 456 GTF2I General transcription factor II-I yes yes 2 0.0036405 121.36 By MS/MS 2.5 0.5 1 1 2 10528000 0 0 10528000 2540 1085 2651 10739;10740 8746 8746 1 0 0 2150800 EDLRLPEGDLGK QDGYLSLLQDSGEVREDLRLPEGDLGKEIE EVREDLRLPEGDLGKEIEQKYDCGEEILIT R E D G K E 0 1 0 2 0 0 2 2 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 1 1340.6936 P63241 P63241 110 121 EIF5A Eukaryotic translation initiation factor 5A-1 yes yes 2 0.019569 108.68 By MS/MS 8 0 1 1 18040000 0 0 18040000 2541 1067 2652 10741 8747 8747 1 0 0 2765700 EDLTEIR LLPHIRGNVGFVFTKEDLTEIRDMLLANKV NVGFVFTKEDLTEIRDMLLANKVPAAARAG K E D I R D 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 874.43961 P05388;Q8NHW5 P05388 93 99 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.0016683 148.07 By matching By MS/MS 5.5 0.5 1 1 1 1 144050000 670420 0 143380000 2542 432 2653 10742;10743 8748 8748 1 537090 0 21451000 EDLTEIRDMLLANK LLPHIRGNVGFVFTKEDLTEIRDMLLANKV KEDLTEIRDMLLANKVPAAARAGAIAPCEV K E D N K V 1 1 1 2 0 0 2 0 0 1 3 1 1 0 0 0 1 0 0 0 0 0 14 1 1659.8502 P05388;Q8NHW5 P05388 93 106 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 1.7722E-33 213.63 By matching By MS/MS 6 0 2 1 1 13555000 0 2526200 11028000 2543 432 2654 10744;10745 8749 8749 1 0 874490 1650000 EDLTEIRDMLLANKVPAAAR LLPHIRGNVGFVFTKEDLTEIRDMLLANKV IRDMLLANKVPAAARAGAIAPCEVTVPAQN K E D A R A 4 2 1 2 0 0 2 0 0 1 3 1 1 0 1 0 1 0 0 1 0 0 20 2 2225.1838 P05388;Q8NHW5 P05388 93 112 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 3;4 9.2166E-15 155.49 By MS/MS 6 0 2 2 95288000 0 95288000 0 2544 432 2655 10746;10747 8750;8751 8750 2 0 32985000 0 EDLVVAPAGITLK EEEHDCFLEEIMTKREDLVVAPAGITLKEA KREDLVVAPAGITLKEANEILQRSKKGKLP R E D L K E 2 0 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P12268 P12268 183 195 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 2 0.0086923 90.05 By MS/MS 4 0 1 1 3148600 0 3148600 0 2545 535 2656 10748 8752 8752 1 0 1044900 0 EDLWPNPLQYYLLR DHSLPESDKIAEIIKEDLWPNPLQYYLLRE KEDLWPNPLQYYLLREGVRRARRRPLREPV K E D L R E 0 1 1 1 0 1 1 0 0 0 4 0 0 0 2 0 0 1 2 0 0 0 14 0 1818.9305 Q9H0U9 Q9H0U9 398 411 TSPYL1 Testis-specific Y-encoded-like protein 1 yes yes 2 0.030394 69.276 By MS/MS 4 0 1 1 1661700 0 0 1661700 2546 1965 2657 10749 8753 8753 1 0 0 271410 EDLYLKPIQR LKVRIMGPNYTPGKKEDLYLKPIQRTILMM TPGKKEDLYLKPIQRTILMMGRYVEPIEDV K E D Q R T 0 1 0 1 0 1 1 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 10 1 1273.703 P13639 P13639 440 449 EEF2 Elongation factor 2 yes yes 2;3 1.4232E-08 116.9 By matching By MS/MS By MS/MS 2.4 1.28 3 3 2 1 1 1 4 5 36302000 2036400 13918000 20348000 2547 547 2658 10750;10751;10752;10753;10754;10755;10756;10757;10758;10759 8754;8755;8756;8757 8757 3 2036400 6272900 3946300 EDMAALEK YVGEGMEEGEFSEAREDMAALEKDYEEVGV GEFSEAREDMAALEKDYEEVGVDSVEGEGE R E D E K D 2 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 8 0 905.41643 P68363;P68366;Q71U36;Q9BQE3 P68363 423 430 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2 0.027104 78.77 By matching By MS/MS 6.33 1.37 2 2 1 1 2 4 424370000 0 96017000 328350000 2548 1077;1515;1883;1078 2659 10760;10761;10762;10763;10764;10765 8758;8759 8758 2 0 24980000 49720000 EDMTPLNLSSR HGELHPSEGPWGAPREDMTPLNLSSRAEPV GAPREDMTPLNLSSRAEPVRDIRCEFCGEF R E D S R A 0 1 1 1 0 0 1 0 0 0 2 0 1 0 1 2 1 0 0 0 0 0 11 0 1261.5973 O95785 O95785 1210 1220 WIZ Protein Wiz yes yes 2 0.0034096 105.36 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 2 2 16960000 1884600 4215500 10859000 2549 340 2660 10766;10767;10768;10769;10770 8760;8761;8762 8761 3 1884600 1920700 2337400 EDNFNTAMQVLR GDGLHLVVDENGDFREDNFNTAMQVLRDAG DFREDNFNTAMQVLRDAGDLAKGDQKGRKG R E D L R D 1 1 2 1 0 1 1 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 12 0 1436.6718 P42285 P42285 340 351 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.0013367 114.4 By MS/MS 2 0 1 1 4254700 0 0 4254700 2550 800 2661 10771 8763 8763 1 0 0 961480 EDNIGNQLLR IQGRSAEEAYKQQIKEDNIGNQLLRKMGWT KQQIKEDNIGNQLLRKMGWTGGGLGKSGEG K E D L R K 0 1 2 1 0 1 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1170.5993 O15226 O15226 551 560 NKRF NF-kappa-B-repressing factor yes yes 2 0.0081694 91.069 By MS/MS 3 0 1 1 5254000 0 0 5254000 2551 174 2662 10772 8764 8764 1 0 0 1019000 EDPQTFYYAVAVVK PNNLKPVVAEFYGSKEDPQTFYYAVAVVKK KEDPQTFYYAVAVVKKDSGFQMNQLRGKKS K E D V K K 2 0 0 1 0 1 1 0 0 0 0 1 0 1 1 0 1 0 2 3 0 0 14 0 1628.8086 P02787 P02787 108 121 TF Serotransferrin yes yes 2;3 0.00061988 141.89 By MS/MS 7 2.83 1 2 3 41783000 41783000 0 0 2552 399 2663 10773;10774;10775 8765;8766;8767 8767 3 26843000 0 0 EDPVSCAFVVLMAHGR FQEELEKFQQAIDSREDPVSCAFVVLMAHG DPVSCAFVVLMAHGREGFLKGEDGEMVKLE R E D G R E 2 1 0 1 1 0 1 1 1 0 1 0 1 1 1 1 0 0 0 3 0 0 16 0 1786.8495 P31944 P31944 76 91 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 3 0.0047388 62.378 By MS/MS 6.5 2.06 1 1 1 1 4 6251100 6251100 0 0 2553 723 2664 10776;10777;10778;10779 8768;8769;8770 8769 2 4646400 0 0 EDQSILCTGESGAGK YAITDTAYRSMMQDREDQSILCTGESGAGK EDQSILCTGESGAGKTENTKKVIQYLAYVA R E D G K T 1 0 0 1 1 1 2 3 0 1 1 1 0 0 0 2 1 0 0 0 0 0 15 0 1550.6883 P35579;P35580;Q7Z406 P35579 166 180 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 2 0.00051589 142.1 By MS/MS 1 0 1 1 9514200 0 9514200 0 2554 752;753;1531 2665 10780 8771 8771 1 0 4650400 0 EDQTEYLEER GEPIGRGTKVILHLKEDQTEYLEERRVKEV ILHLKEDQTEYLEERRVKEVVKKHSQFIGY K E D E R R 0 1 0 1 0 1 4 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1310.5626 P07900;Q58FF6;P08238;Q58FF7 P08238 187 196 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 no no 2 6.5273E-09 118.26 By MS/MS 9 0 2 2 0 0 0 0 2555 466;469 2666 10781;10782 8772;8773 8772 2 0 0 0 EDQTLALLNQFK YEALRKQQSKKGTSREDQTLALLNQFKSKL TSREDQTLALLNQFKSKLTQAIAETPENDI R E D F K S 1 0 1 1 0 2 1 0 0 0 3 1 0 1 0 0 1 0 0 0 0 0 12 0 1418.7405 Q6UX04 Q6UX04 382 393 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes yes 2 0.0041417 105.1 By MS/MS 3.5 0.5 1 1 2 14971000 0 0 14971000 2556 1505 2667 10783;10784 8774 8774 1 0 0 2711400 EDSGSVPSTGPSQGTPISLK PCQWSYVTSVPSAPKEDSGSVPSTGPSQGT VPSTGPSQGTPISLKRKSAGSMCITQFMKK K E D L K R 0 0 0 1 0 1 1 3 0 1 1 1 0 0 3 5 2 0 0 1 0 0 20 0 1942.9484 Q13111 Q13111 851 870 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 1.3589E-13 150.22 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 17816000 0 4475100 13341000 2557 1220 2668 10785;10786;10787 8775;8776 8775 2 0 2015200 2935100 EDSHPFDLGLYNEAVK TAKATILCTSYVQFKEDSHPFDLGLYNEAV DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ K E D V K I 1 0 1 2 0 0 2 1 1 0 2 1 0 1 1 1 0 0 1 1 0 0 16 0 1832.8581 P35244 P35244 89 104 RPA3 Replication protein A 14 kDa subunit yes yes 2;3 1.9978E-90 249.69 By MS/MS 9 0 2 2 32304000 0 0 32304000 2558 743 2669 10788;10789 8777;8778 8778 2 0 0 10319000 EDSQRPGAHLTVK KVDGRVVEPKRAVSREDSQRPGAHLTVKKI SREDSQRPGAHLTVKKIFVGGIKEDTEEHH R E D V K K 1 1 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 0 1 0 0 13 1 1436.7372 P09651;Q32P51 P09651 93 105 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 2.8345E-06 165.18 By MS/MS By MS/MS 6 1.15 1 2 3 2 1 5 4 468390000 0 376100000 92287000 2559 490 2670 10790;10791;10792;10793;10794;10795;10796;10797;10798 8779;8780;8781;8782;8783;8784;8785 8785 7 0 139540000 13572000 EDSQRPGAHLTVKK KVDGRVVEPKRAVSREDSQRPGAHLTVKKI REDSQRPGAHLTVKKIFVGGIKEDTEEHHL R E D K K I 1 1 0 1 0 1 1 1 1 0 1 2 0 0 1 1 1 0 0 1 0 0 14 2 1564.8322 P09651;Q32P51 P09651 93 106 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 3 0.026549 57.267 By MS/MS By matching 5.6 1.02 1 1 2 1 4 1 72083000 0 71213000 869610 2560 490 2671 10799;10800;10801;10802;10803 8786;8787;8788 8786 3 0 26093000 130100 EDSVKPGAHLTVK KVDGRVVEPKRAVSREDSVKPGAHLTVKKI SREDSVKPGAHLTVKKIFVGGIKEDTEEYN R E D V K K 1 0 0 1 0 0 1 1 1 0 1 2 0 0 1 1 1 0 0 2 0 0 13 1 1379.7409 P51991 P51991 114 126 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 8.0836E-07 171.92 By MS/MS By MS/MS 5 1.37 1 1 3 4 4 2 9 6 528900000 0 220370000 308530000 2561 900 2672 10804;10805;10806;10807;10808;10809;10810;10811;10812;10813;10814;10815;10816;10817;10818 8789;8790;8791;8792;8793;8794;8795;8796;8797;8798 8796 10 0 66173000 43943000 EDSVKPGAHLTVKK KVDGRVVEPKRAVSREDSVKPGAHLTVKKI REDSVKPGAHLTVKKIFVGGIKEDTEEYNL R E D K K I 1 0 0 1 0 0 1 1 1 0 1 3 0 0 1 1 1 0 0 2 0 0 14 2 1507.8358 P51991 P51991 114 127 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3 0.010229 68.033 By MS/MS 6.5 0.5 1 1 2 14047000 0 14047000 0 2562 900 2673 10819;10820 8799;8800 8799 2 0 5220000 0 EDTEEYNLR GAHLTVKKIFVGGIKEDTEEYNLRDYFEKY FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K E D L R D 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1167.5044 P51991 P51991 135 143 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 2.4792E-07 159.04 By MS/MS By MS/MS By MS/MS 5.17 0.687 1 3 2 2 1 3 158810000 5584100 10566000 142660000 2563 900 2674 10821;10822;10823;10824;10825;10826 8801;8802;8803;8804;8805 8804 5 5700200 2723500 20204000 EDTLLLIGHLER AESLFAWACQSPLGKEDTLLLIGHLERVTV LGKEDTLLLIGHLERVTVEANGSLDAVNLA K E D E R V 0 1 0 1 0 0 2 1 1 1 4 0 0 0 0 0 1 0 0 0 0 0 12 0 1407.7722 Q92621 Q92621 244 255 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 0.001298 114.83 By MS/MS 1 0 2 2 15513000 0 0 15513000 2564 1714 2675 10827;10828 8806;8807 8806 2 0 0 3342500 EDVATWQQSSLSLR RALGKNSELLVVSAREDVATWQQSSLSLRW REDVATWQQSSLSLRWASRLRAPTSTEANH R E D L R W 1 1 0 1 0 2 1 0 0 0 2 0 0 0 0 3 1 1 0 1 0 0 14 0 1618.7951 P78316 P78316 654 667 NOP14 Nucleolar protein 14 yes yes 2 5.1017E-12 183.85 By MS/MS By MS/MS 2 0 2 1 1 11659000 0 4131300 7527200 2565 1083 2676 10829;10830 8808;8809 8809 2 0 1860400 1701000 EDVFVHQTAIK NVRNGYGFINRNDTKEDVFVHQTAIKKNNP NDTKEDVFVHQTAIKKNNPRKYLRSVGDGE K E D I K K 1 0 0 1 0 1 1 0 1 1 0 1 0 1 0 0 1 0 0 2 0 0 11 0 1285.6667 P16989;Q9Y2T7;P67809 P67809 82 92 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2;3 1.9263E-112 214.71 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 77450000 0 25217000 52233000 2566 1072;581 2677 10831;10832;10833;10834 8810;8811;8812;8813 8810 4 0 6500200 7691700 EDVFVHQTAIKK NVRNGYGFINRNDTKEDVFVHQTAIKKNNP DTKEDVFVHQTAIKKNNPRKYLRSVGDGET K E D K K N 1 0 0 1 0 1 1 0 1 1 0 2 0 1 0 0 1 0 0 2 0 0 12 1 1413.7616 P16989;P67809 P67809 82 93 YBX3;YBX1 Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1 no no 2;3 0.00034119 132.25 By MS/MS 5 0.707 1 2 1 4 22919000 0 22919000 0 2567 1072;581 2678 10835;10836;10837;10838 8814;8815;8816 8816 3 0 6265000 0 EDVISSIR LAPKLDPEEMKRKMREDVISSIRNFLIYVA EMKRKMREDVISSIRNFLIYVALLRVTPFI R E D I R N 0 1 0 1 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 8 0 917.48181 Q8N4H5 Q8N4H5 22 29 TOMM5 Mitochondrial import receptor subunit TOM5 homolog yes yes 2 0.0001561 143.11 By MS/MS 10 0 1 1 7600400 0 0 7600400 2568 1604 2679 10839 8817 8817 1 0 0 16623000 EDVWLPLMSYR VYLEKFMTFQMSLRREDVWLPLMSYRNSLL SLRREDVWLPLMSYRNSLLAGGDDDTMSVI R E D Y R N 0 1 0 1 0 0 1 0 0 0 2 0 1 0 1 1 0 1 1 1 0 0 11 0 1407.6857 Q8N3U4 Q8N3U4 1035 1045 STAG2 Cohesin subunit SA-2 yes yes 2 4.9936E-07 155.84 By MS/MS 1.5 0.5 1 1 2 15858000 0 0 15858000 2569 1603 2680 10840;10841 8818;8819 8819 2 0 0 3537800 EDYDSVEQDGDEPGPQR GRGFGSEEGSRARMREDYDSVEQDGDEPGP YDSVEQDGDEPGPQRSVEGWILFVTGVHEE R E D Q R S 0 1 0 4 0 2 3 2 0 0 0 0 0 0 2 1 0 0 1 1 0 0 17 0 1934.7766 Q9Y5S9 Q9Y5S9 52 68 RBM8A RNA-binding protein 8A yes yes 2 8.8833E-61 229 By MS/MS 7 0 1 1 12093000 0 0 12093000 2570 2302 2681 10842 8820 8820 1 0 0 2145800 EEAEALYHSK AEVKAQYEEIAQRSKEEAEALYHSKYEELQ AQRSKEEAEALYHSKYEELQVTVGRHGDSL K E E S K Y 2 0 0 0 0 0 3 0 1 0 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1175.5459 CON__P35908;CON__P35908v2;P35908 CON__P35908 371 380 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00056701 134.26 By MS/MS By matching By MS/MS 6.07 2.66 1 1 1 1 1 2 2 2 2 1 7 2 5 447430000 93162000 6176700 348090000 + 2571 65;66 2682 10843;10844;10845;10846;10847;10848;10849;10850;10851;10852;10853;10854;10855;10856 8821;8822;8823;8824;8825;8826;8827 8821 6 79199000 3089600 109150000 EEAEEEIDFEK PGGMDEPTITDLNTREEAEEEIDFEKDLLT LNTREEAEEEIDFEKDLLTIPPGFKKGMDF R E E E K D 1 0 0 1 0 0 6 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 11 0 1366.5776 Q15477 Q15477 171 181 SKIV2L Helicase SKI2W yes yes 3 0.065035 39.785 By matching By MS/MS 2.67 1.49 2 1 1 1 1 1 5 91681000 2565800 0 89115000 2572 1371 2683 10857;10858;10859;10860;10861;10862 8828 8828 1 2565800 0 14790000 EEAENTLQSFR IMRLREKLQEEMLQREEAENTLQSFRQDVD MLQREEAENTLQSFRQDVDNASLARLDLER R E E F R Q 1 1 1 0 0 1 3 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1322.6103 P08670 P08670 197 207 VIM Vimentin yes yes 2;3 1.01E-89 253.26 By MS/MS By MS/MS By MS/MS 3.67 1.66 2 2 2 5 2 1 1 1 5 9 2236100000 55862000 180310000 1999900000 2573 476 2684 10863;10864;10865;10866;10867;10868;10869;10870;10871;10872;10873;10874;10875;10876;10877 8829;8830;8831;8832;8833;8834;8835;8836;8837;8838;8839;8840;8841;8842;8843;8844;8845;8846;8847 8847 17 43582000 57443000 322270000 EEAENTLQSFRQDVDNASLAR IMRLREKLQEEMLQREEAENTLQSFRQDVD LQSFRQDVDNASLARLDLERKVESLQEEIA R E E A R L 3 2 2 2 0 2 3 0 0 0 2 0 0 1 0 2 1 0 0 1 0 0 21 1 2392.1255 P08670 P08670 197 217 VIM Vimentin yes yes 3 3.083E-14 137.09 By MS/MS 4 0 1 1 11584000 0 11584000 0 2574 476 2685 10878 8848 8848 1 0 3844200 0 EEAETPAEATGKPQR QNSWKKRQVFKSLCREEAETPAEATGKPQR EEAETPAEATGKPQRDEAGPQRQLPALDGS R E E Q R D 3 1 0 0 0 1 4 1 0 0 0 1 0 0 2 0 2 0 0 0 0 0 15 1 1612.7693 Q8N9T8 Q8N9T8 593 607 KRI1 Protein KRI1 homolog yes yes 3 0.018117 55.173 By MS/MS By matching 2.5 0.5 1 1 1 1 6023700 0 2134700 3889100 2575 1619 2686 10879;10880 8849 8849 1 0 961270 754300 EEAIEHNYGGHDDDLSVR KWCKFDDDVVSRCTKEEAIEHNYGGHDDDL IEHNYGGHDDDLSVRHCTNAYMLVYIRESK K E E V R H 1 1 1 3 0 0 3 2 2 1 1 0 0 0 0 1 0 0 1 1 0 0 18 0 2054.893 Q93009 Q93009 491 508 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 3 2.6139E-09 132.64 By MS/MS 2 0 1 1 6438700 0 0 6438700 2576 1738 2687 10881 8850 8850 1 0 0 1455000 EEAQALEDLTGFK TENLTGSKRRPQTPKEEAQALEDLTGFKEL PKEEAQALEDLTGFKELFQTPGHTEEAVAA K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 13 0 1449.6987 P46013 P46013 1338 1350 MKI67 Antigen KI-67 yes yes 2 0.00010813 93.058 By MS/MS 2 0 1 1 0 0 0 0 2577 821 2688 10882 8851 8851 1 0 0 0 EEAQSLEDLAGFK AARVTGMKKWPRTPKEEAQSLEDLAGFKEL PKEEAQSLEDLAGFKELFQTPGPSEESMTD K E E F K E 2 0 0 1 0 1 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1435.6831 P46013 P46013 1094 1106 MKI67 Antigen KI-67 yes no 2 0.0020237 108.67 By MS/MS 2 0.816 1 1 1 3 25058000 0 0 25058000 2578 821 2689 10883;10884;10885 8852;8853 8852 2 0 0 5461000 EEASGSSVTAEEAK FWEIVVQDGITLITKEEASGSSVTAEEAKK KEEASGSSVTAEEAKKFLAPKDKPSGDTAA K E E A K K 3 0 0 0 0 0 4 1 0 0 0 1 0 0 0 3 1 0 0 1 0 0 14 0 1393.6209 P13010 P13010 689 702 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 1.7679E-58 236.77 By MS/MS By MS/MS 3 0 2 1 1 64106000 0 13821000 50286000 2579 542 2690 10886;10887 8854;8855 8854 2 0 5891800 9753000 EEASGSSVTAEEAKK FWEIVVQDGITLITKEEASGSSVTAEEAKK EEASGSSVTAEEAKKFLAPKDKPSGDTAAV K E E K K F 3 0 0 0 0 0 4 1 0 0 0 2 0 0 0 3 1 0 0 1 0 0 15 1 1521.7158 P13010 P13010 689 703 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 0.00023375 119.39 By MS/MS By MS/MS 2.67 0.471 2 4 4 2 77761000 0 24936000 52825000 2580 542 2691 10888;10889;10890;10891;10892;10893 8856;8857;8858;8859;8860;8861 8859 6 0 10827000 10245000 EEAVLFLLDLPK QILRVNNVDFTNIIREEAVLFLLDLPKGEE IIREEAVLFLLDLPKGEEVTILAQKKKDVY R E E P K G 1 0 0 1 0 0 2 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 12 0 1385.7806 Q07157 Q07157 481 492 TJP1 Tight junction protein ZO-1 yes yes 2 0.0015196 112.36 By MS/MS 1 0 1 1 5302900 0 0 5302900 2581 1177 2692 10894 8862 8862 1 0 0 1142600 EEDGSLSLDGADSTGVVAK EEWSCSLCHVLPDLKEEDGSLSLDGADSTG SLSLDGADSTGVVAKLSPANQRKCERVLLA K E E A K L 2 0 0 3 0 0 2 3 0 0 2 1 0 0 0 3 1 0 0 2 0 0 19 0 1848.8589 Q13263 Q13263 677 695 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.0007046 79.875 By MS/MS 2 0 1 1 7139500 0 0 7139500 2582 1235 2693 10895 8863 8863 1 0 0 1613400 EEEEFNTGPLSVLTQSVK NKPKSEMTPEELQKREEEEFNTGPLSVLTQ EFNTGPLSVLTQSVKNNTQVLINCRNNKKL R E E V K N 0 0 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 18 0 2005.9844 P62316 P62316 20 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 3.8371E-23 194.06 By MS/MS 8.5 0.5 2 2 4 53747000 0 0 53747000 2583 1023 2694 10896;10897;10898;10899 8864;8865;8866 8865 3 0 0 9258400 EEEIAALVIDNGSGMCK ______________________________ EIAALVIDNGSGMCKAGFAGDDAPRAVFPS M E E C K A 2 0 1 1 1 0 3 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 17 0 1834.8441 P63261 P63261 2 18 ACTG1 Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed yes yes 2 4.5484E-06 117.93 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 11001000 5833900 5166800 0 2584 1069 2695;2696 10900;10901;10902;10903 8867;8868;8869 8867 515 2 4673700 1427500 0 EEEIEAQEK KEREAKEMHERKRQREEEIEAQEKAKRERE ERKRQREEEIEAQEKAKREREWQKNFEESR R E E E K A 1 0 0 0 0 1 5 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 9 0 1103.4982 O75937 O75937 193 201 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2 0.040324 74.301 By MS/MS 6 0 1 1 1483200 0 0 1483200 2585 291 2697 10904 8870 8870 1 0 0 221910 EEEKLELQK RVFSLSSEFKNITVREEEKLELQKLLERVP KNITVREEEKLELQKLLERVPIPVKESIEE R E E Q K L 0 0 0 0 0 1 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1144.5976 O75643 O75643 1031 1039 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.004887 133.98 By MS/MS 1 0 1 1 9358400 0 0 9358400 2586 277 2698 10905 8871 8871 1 0 0 2016400 EEELAAVR TWYAKGRAPCAGPSREEELAAVREAEREAL PCAGPSREEELAAVREAEREALLAALGYKN R E E V R E 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 915.46616 Q9BU76 Q9BU76 64 71 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 0.017238 86.472 By matching By MS/MS 6 0 2 1 1 9199000 1399300 0 7799700 2587 1904 2699 10906;10907 8872 8872 1 1863200 0 1166900 EEELQAALAR LQAQIAELKMQLAKKEEELQAALARVEEEA QLAKKEEELQAALARVEEEAAQKNMALKKI K E E A R V 3 1 0 0 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1128.5775 P35579;Q7Z406 P35579 1082 1091 MYH9;MYH14 Myosin-9;Myosin-14 no no 2 0.0002236 122.18 By MS/MS 1.5 0.5 1 1 2 16062000 0 16062000 0 2588 752;1531 2700 10908;10909 8873 8873 1 0 7618800 0 EEEMGEEEEVER NEYLSSFKVAQYVVREEEMGEEEEVEREII VVREEEMGEEEEVEREIIKQEESVDPDYWE R E E E R E 0 1 0 0 0 0 8 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 12 0 1493.5828 Q14839 Q14839 1289 1300 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 1.9225E-05 152.97 By MS/MS 1 0 1 1 13155000 0 0 13155000 2589 1321 2701 10910 8874 8874 1 0 0 2834400 EEEMMIR RKEMQLRQEEERRRREEEMMIRQREMEEQM QEEERRRREEEMMIRQREMEEQMRRQREES R E E I R Q 0 1 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 7 0 936.40449 P23246 P23246 575 581 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.0036074 129.96 By MS/MS By MS/MS 3.29 1.67 1 2 1 1 1 1 2 5 117830000 0 21047000 96780000 2590 638 2702 10911;10912;10913;10914;10915;10916;10917 8875;8876;8877 8876 3 0 9548900 18785000 EEETEAAIGAPPTATEGPETKPVLMALAEGPGAEGPR GTPGAPPLAGMAIVKEEETEAAIGAPPTAT VLMALAEGPGAEGPRLASPSGSTSSGLEVV K E E P R L 7 1 0 0 0 0 8 5 0 1 2 1 1 0 6 0 4 0 0 1 0 0 37 1 3672.7829 Q13263 Q13263 555 591 TRIM28 Transcription intermediary factor 1-beta yes yes 3 1.4927E-47 115.9 By MS/MS 2 0 1 1 6231900 0 0 6231900 2591 1235 2703 10918 8878 8878 1 0 0 1408300 EEEVTGPVIAPLFPQK IRSGGPVVVLVQLEREEEVTGPVIAPLFPQ EEVTGPVIAPLFPQKREEGWWVVIGDAKSN R E E Q K R 1 0 0 0 0 1 3 1 0 1 1 1 0 1 3 0 1 0 0 2 0 0 16 0 1752.9298 O75643 O75643 2044 2059 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00012587 100.88 By MS/MS By matching 1.5 0.5 1 1 1 1 15907000 0 9173300 6734000 2592 277 2704 10919;10920 8879;8880 8879 2 0 4483800 1521800 EEEWDPEYTPK NNNNNSNNDFQKRNREEEWDPEYTPKSKKY KRNREEEWDPEYTPKSKKYYLHDDREGEGS R E E P K S 0 0 0 1 0 0 4 0 0 0 0 1 0 0 2 0 1 1 1 0 0 0 11 0 1421.5987 Q9NYF8;Q9Y2W1 Q9Y2W1 866 876 BCLAF1;THRAP3 Bcl-2-associated transcription factor 1;Thyroid hormone receptor-associated protein 3 no no 2 0.0064955 98.044 By MS/MS 1.5 0.5 1 1 2 27406000 0 0 27406000 2593 2097;2252 2705 10921;10922 8881 8881 1 0 0 6115700 EEFLFLSPNLDSHGLK HGAEIVSLRLLSLVKEEFLFLSPNLDSHGL EFLFLSPNLDSHGLKCASSPHGLVMVGVAG K E E L K C 0 0 1 1 0 0 2 1 1 0 4 1 0 2 1 2 0 0 0 0 0 0 16 0 1844.9309 Q5JPI3 Q5JPI3 208 223 C3orf38 Uncharacterized protein C3orf38 yes yes 3 0.0010189 79.346 By MS/MS 6 0 1 1 6779600 0 0 6779600 2594 1437 2706 10923 8882 8882 1 0 0 1014300 EEFTAFLHPEEFEHMK RFKAADLNGDLTATREEFTAFLHPEEFEHM EFTAFLHPEEFEHMKEIVVLETLEDIDKNG R E E M K E 1 0 0 0 0 0 5 0 2 0 1 1 1 3 1 0 1 0 0 0 0 0 16 0 2019.9037 Q15293 Q15293 189 204 RCN1 Reticulocalbin-1 yes yes 2;3;4 3.5954E-05 122.51 By MS/MS 5.67 0.745 3 2 1 6 68888000 0 0 68888000 2595 1354 2707 10924;10925;10926;10927;10928;10929 8883;8884;8885;8886;8887 8884 5 0 0 9770700 EEGFPIRPHYFWPLLVGR ANKTDLAKALMKAVKEEGFPIRPHYFWPLL FPIRPHYFWPLLVGRRKEKNVQGIIEILKG K E E G R R 0 2 0 0 0 0 2 2 1 1 2 0 0 2 3 0 0 1 1 1 0 0 18 1 2212.1582 P42704 P42704 432 449 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 4 0.00013374 92.952 By MS/MS 2 0 1 1 6021700 0 0 6021700 2596 808 2708 10930 8888 8888 1 0 0 1360800 EEGPYEVEVTYDGVPVPGSPFPLEAVAPTKPSK PGLGADNSVVRFLPREEGPYEVEVTYDGVP SPFPLEAVAPTKPSKVKAFGPGLQGGSAGS R E E S K V 2 0 0 1 0 0 5 3 0 0 1 2 0 1 7 2 2 0 2 5 0 0 33 1 3484.729 P21333 P21333 1037 1069 FLNA Filamin-A yes yes 3 1.5076E-13 72.687 By MS/MS 1 0 1 1 7224100 0 0 7224100 2597 623 2709 10931 8889 8889 1 0 0 1556600 EEGTPLTLYYSHWR VSEQQAVEAWEKLTREEGTPLTLYYSHWRK REEGTPLTLYYSHWRKLRDREIQLEISGKE R E E W R K 0 1 0 0 0 0 2 1 1 0 2 0 0 0 1 1 2 1 2 0 0 0 14 0 1750.8315 Q9Y3T9 Q9Y3T9 610 623 NOC2L Nucleolar complex protein 2 homolog yes yes 2;3 0.00039279 127.83 By matching By matching By MS/MS 2.33 0.471 4 2 1 1 4 72366000 5069700 7960600 59336000 2598 2277 2710 10932;10933;10934;10935;10936;10937 8890;8891;8892 8891 3 6108400 3584800 12204000 EEGWWVVIGDAK EVTGPVIAPLFPQKREEGWWVVIGDAKSNS QKREEGWWVVIGDAKSNSLISIKRLTLQQK R E E A K S 1 0 0 1 0 0 2 2 0 1 0 1 0 0 0 0 0 2 0 2 0 0 12 0 1387.6772 O75643 O75643 2061 2072 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0066909 99.568 By MS/MS 1 0 1 1 14926000 0 0 14926000 2599 277 2711 10938 8893 8893 1 0 0 3216000 EEGYDSVFSVVR CLHPTDLQKVAEMIREEGYDSVFSVVRRHQ MIREEGYDSVFSVVRRHQFRWSEIQKGVRE R E E V R R 0 1 0 1 0 0 2 1 0 0 0 0 0 1 0 2 0 0 1 3 0 0 12 0 1385.6463 Q8NFW8 Q8NFW8 163 174 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.008138 97.277 By MS/MS 4.5 0.5 1 1 2 16534000 0 0 16534000 2600 1644 2712 10939;10940 8894 8894 1 0 0 2447400 EEHGGLIR RDRRRRSKPLTRGAKEEHGGLIRSPRHEKK PLTRGAKEEHGGLIRSPRHEKKKKVRKYWD K E E I R S 0 1 0 0 0 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 909.46683 P26368 P26368 71 78 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2 0.068068 68.485 By MS/MS 3 0 1 1 1576500 0 0 1576500 2601 668 2713 10941 8895 8895 1 0 0 305760 EEILAQAK MKDCMRELDDTRASREEILAQAKENEKKLK DDTRASREEILAQAKENEKKLKSMEAEMIQ R E E A K E 2 0 0 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 900.49165 P35579 P35579 1662 1669 MYH9 Myosin-9 yes yes 2 0.034304 76.847 By MS/MS By matching 2.5 1.12 1 1 1 1 3 1 46301000 0 45488000 813500 2602 752 2714 10942;10943;10944;10945 8896 8896 1 0 22111000 132870 EEIQETQTPTHSR KDDEIVFKQPISCVKEEIQETQTPTHSRKK VKEEIQETQTPTHSRKKRRRSSNQ______ K E E S R K 0 1 0 0 0 2 3 0 1 1 0 0 0 0 1 1 3 0 0 0 0 0 13 0 1554.7274 Q9BYG3 Q9BYG3 272 284 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2;3 5.4529E-34 211.78 By MS/MS By MS/MS 5.33 0.745 1 2 3 1 5 38292000 0 1421300 36871000 2603 1936 2715 10946;10947;10948;10949;10950;10951 8897;8898;8899;8900 8900 4 0 492010 5453200 EEIQSSISGVTAAYNR DEPPNFVQNSMQLSREEIQSSISGVTAAYN EIQSSISGVTAAYNREQLWLANEGLITRLQ R E E N R E 2 1 1 0 0 1 2 1 0 2 0 0 0 0 0 3 1 0 1 1 0 0 16 0 1723.8377 P46940 P46940 723 738 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 3.4711E-05 126.12 By MS/MS 1.5 0.5 1 1 2 3942400 0 3942400 0 2604 835 2716 10952;10953 8901 8901 1 0 1867600 0 EEKAEPPQAMNALMR EEKSPSKKKKKIQKKEEKAEPPQAMNALMR EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ K E E M R L 3 1 1 0 0 1 3 0 0 0 1 1 2 0 2 0 0 0 0 0 0 0 15 1 1713.8178 Q12906 Q12906 394 408 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 0.002205 76.759 By MS/MS 3 0.816 1 1 1 3 11470000 0 11470000 0 2605 1211 2717 10954;10955;10956 8902 8902 1 0 4801500 0 EELDFQK MLRRVDAENRLQTMKEELDFQKNIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE K E E Q K N 0 0 0 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 907.42871 P02545 P02545 202 208 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.067052 83.087 By MS/MS 3 0 1 1 0 0 0 0 2606 387 2718 10957 8903 8903 1 0 0 0 EELEALFLPYDLK QNRNMGKPAQPALSREELEALFLPYDLKRL SREELEALFLPYDLKRLEMYSRNMVDYHLI R E E L K R 1 0 0 1 0 0 3 0 0 0 4 1 0 1 1 0 0 0 1 0 0 0 13 0 1578.8181 Q9H0A0 Q9H0A0 811 823 NAT10 N-acetyltransferase 10 yes yes 2 0.00092966 115.57 By MS/MS 2 0 1 1 1536000 0 1536000 0 2607 1959 2719 10958 8904 8904 1 0 691680 0 EELEFEVPFR TAFKNFIEKVEALTKEELEFEVPFRDLGFN EALTKEELEFEVPFRDLGFNGAPYRSTCLL K E E F R D 0 1 0 0 0 0 4 0 0 0 1 0 0 2 1 0 0 0 0 1 0 0 10 0 1293.6241 Q9Y5B9 Q9Y5B9 793 802 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00052978 133.23 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 38072000 0 1054000 37018000 2608 2296 2720 10959;10960;10961;10962 8905;8906;8907 8907 3 0 474630 8165800 EELEQASQAHGAR ITDLQSSISNLSQAKEELEQASQAHGARLT AKEELEQASQAHGARLTAQVASLTSELTTL K E E A R L 3 1 0 0 0 2 3 1 1 0 1 0 0 0 0 1 0 0 0 0 0 0 13 0 1424.6644 Q14980 Q14980 483 495 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 0.00046158 121.83 By MS/MS By MS/MS 1 0 3 1 2 3603700 0 1055100 2548600 2609 1327 2721 10963;10964;10965 8908;8909;8910 8908 3 0 515720 549130 EELEQTYHAK HEMREQHDAQVRLYKEELEQTYHAKLENAR VRLYKEELEQTYHAKLENARLSSEMNTSTV K E E A K L 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 10 0 1246.583 P20700 P20700 262 271 LMNB1 Lamin-B1 yes yes 2;3 0.00063437 115.49 By MS/MS 3.67 0.943 2 1 3 17111000 0 0 17111000 2610 619 2722 10966;10967;10968 8911;8912;8913 8911 3 0 0 3226300 EELGFRPEYSASQLK MIDRWYHPGCFVKNREELGFRPEYSASQLK EELGFRPEYSASQLKGFSLLATEDKEALKK R E E L K G 1 1 0 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 15 1 1752.8683 P09874 P09874 168 182 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 2.2306E-107 269.44 By MS/MS By MS/MS 2 0.756 2 3 2 1 6 465380000 0 34522000 430860000 2611 492 2723 10969;10970;10971;10972;10973;10974;10975 8914;8915;8916;8917;8918;8919;8920 8919 7 0 15546000 95532000 EELGLIEQAYDNPHEALSR KEAYSVKSRLNQSQREELGLIEQAYDNPHE LIEQAYDNPHEALSRIKRHLLTQRAFKEVG R E E S R I 2 1 1 1 0 1 4 1 1 1 3 0 0 0 1 1 0 0 1 0 0 0 19 0 2183.0495 Q6P2Q9 Q6P2Q9 862 880 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 6.6409E-292 338.79 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 65448000 0 5329700 60118000 2612 1490 2724 10976;10977;10978;10979 8921;8922;8923;8924 8923 4 0 2605100 13037000 EELLAEFGSGTLDLPALTR VWDVLASGYVSRAAREELLAEFGSGTLDLP AEFGSGTLDLPALTRRLTAIIEEAEEAPGA R E E T R R 2 1 0 1 0 0 3 2 0 0 5 0 0 1 1 1 2 0 0 0 0 0 19 0 2031.0524 P58107 P58107 2551 2569 EPPK1 Epiplakin yes no 2 1.554E-96 254.89 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39146000 0 5347100 33799000 2613 958 2725 10980;10981;10982 8925;8926;8927 8926 3 0 2613600 7299300 EELMESR RLSSEMNTSTVNSAREELMESRMRIESLSS TSTVNSAREELMESRMRIESLSSQLSNLQK R E E S R M 0 1 0 0 0 0 3 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 7 0 892.39603 P20700 P20700 291 297 LMNB1 Lamin-B1 yes yes 2 0.0028633 139.27 By MS/MS By MS/MS 3.43 0.904 1 3 2 1 2 5 308830000 0 48050000 260780000 2614 619 2726;2727 10983;10984;10985;10986;10987;10988;10989 8928;8929;8930;8931;8932;8933 8929 5 0 20582000 49919000 EELMSSDLEETAGSTSIPK SISFSKPKKKKSFSKEELMSSDLEETAGST SSDLEETAGSTSIPKRKKSTPKEETVNDPE K E E P K R 1 0 0 1 0 0 4 1 0 1 2 1 1 0 1 4 2 0 0 0 0 0 19 0 2022.9303 O00567 O00567 515 533 NOP56 Nucleolar protein 56 yes yes 2 5.9407E-09 130.24 By matching By MS/MS 3 0.816 1 1 1 1 2 45619000 0 2659400 42959000 2615 130 2728 10990;10991;10992 8934 8934 1 0 1197600 7355500 EELNAISGPNEFAEFYNR GNLRDLYDDKDGLRKEELNAISGPNEFAEF NAISGPNEFAEFYNRLKQIKEFHRKHPNEI K E E N R L 2 1 3 0 0 0 4 1 0 1 1 0 0 2 1 1 0 0 1 0 0 0 18 0 2098.9596 Q12874 Q12874 70 87 SF3A3 Splicing factor 3A subunit 3 yes yes 2 1.5205E-156 287.76 By MS/MS 4 0 1 1 7808500 0 0 7808500 2616 1206 2729 10993 8935 8935 1 0 0 1275400 EELSALVAPAFAHTSQVLVDK AFALGGLGSGFASNREELSALVAPAFAHTS VAPAFAHTSQVLVDKSLKGWKEIEYEVVRD R E E D K S 4 0 0 1 0 1 2 0 1 0 3 1 0 1 1 2 1 0 0 3 0 0 21 0 2224.1739 P27708 P27708 572 592 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 3 0.00015136 71.853 By MS/MS 1 0 1 1 5857300 0 5857300 0 2617 681 2730 10994 8936 8936 1 0 2862900 0 EELSEEGYLAK EIKNQLCDLETKLRKEELSEEGYLAKVKSL KLRKEELSEEGYLAKVKSLLNKDLSLENGA K E E A K V 1 0 0 0 0 0 4 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 0 1266.598 P26358 P26358 71 81 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.016557 86.136 By MS/MS 1.5 0.5 1 1 2 13205000 0 0 13205000 2618 667 2731 10995;10996 8937 8937 1 0 0 2902400 EELSNVLAAMR IKKRVGTHIRAKRKREELSNVLAAMRKAAA KRKREELSNVLAAMRKAAAKKD________ R E E M R K 2 1 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 11 0 1231.6231 Q9Y3U8 Q9Y3U8 88 98 RPL36 60S ribosomal protein L36 yes yes 2 2.8486E-32 199.68 By MS/MS By MS/MS By MS/MS 7.75 1.01 2 2 5 3 1 5 6 195670000 0 61847000 133820000 2619 2278 2732;2733 10997;10998;10999;11000;11001;11002;11003;11004;11005;11006;11007;11008 8938;8939;8940;8941;8942;8943;8944;8945;8946;8947;8948 8938 735 11 0 28671000 27911000 EELTLEGIR TKKFMRDPIRILVKKEELTLEGIRQFYINV RILVKKEELTLEGIRQFYINVEREEWKLDT K E E I R Q 0 1 0 0 0 0 3 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1058.5608 P60842 P60842 239 247 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2 0.00093398 110.31 By MS/MS 5 0 1 1 9911700 0 0 9911700 2620 967 2734 11009 8949 8949 1 0 0 1382500 EELTSHQSQLTAFFLEALDFR PFMSILQEHIGVMKKEELTSHQSQLTAFFL QSQLTAFFLEALDFRAQHSENDLEEVGKTE K E E F R A 2 1 0 1 0 2 3 0 1 0 4 0 0 3 0 2 2 0 0 0 0 0 21 0 2481.2176 Q9H583 Q9H583 1858 1878 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3 0.00014791 72.015 By MS/MS 2.5 0.5 1 1 2 5973800 0 0 5973800 2621 1984 2735 11010;11011 8950 8950 1 0 0 1207500 EELTWLQSLR DYFSFLFSTLTGFSKEELTWLQSLRGVPHV TGFSKEELTWLQSLRGVPHVIQTQLSPVLL K E E L R G 0 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 10 0 1273.6667 Q9NXF1 Q9NXF1 694 703 TEX10 Testis-expressed sequence 10 protein yes yes 2 3.66E-22 187 By matching By MS/MS 2.33 0.471 2 1 1 2 15976000 0 1456600 14519000 2622 2089 2736 11012;11013;11014 8951;8952 8951 2 0 655930 3049900 EELYQNLTR AFRALSSEGKPYVTKEELYQNLTREQADYC KPYVTKEELYQNLTREQADYCVSHMKPYVD K E E T R E 0 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 Q13813 Q13813 2427 2435 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00040123 122.19 By MS/MS 1.5 0.5 1 1 2 15747000 0 15747000 0 2623 1268 2737 11015;11016 8953 8953 1 0 7648700 0 EEMIHNLQ SLMSLVNKTTHLIAKEEMIHNLQ_______ TTHLIAKEEMIHNLQ_______________ K E E L Q - 0 0 1 0 0 1 2 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 8 0 1012.4648 O00232 O00232 449 456 PSMD12 26S proteasome non-ATPase regulatory subunit 12 yes yes 2 0.0013392 117.18 By MS/MS 4 0 1 1 13053000 13053000 0 0 2624 112 2738 11017 8954 8954 1 10184000 0 0 EEMLQMIR QQGRLIDQQSNKLAKEEMLQMIRHGATHVF QSNKLAKEEMLQMIRHGATHVFASKESELT K E E I R H 0 1 0 0 0 1 2 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 8 0 1048.5045 P28370 P28370 663 670 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 7.1859E-20 185.99 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 19837000 0 2698500 17139000 2625 693 2739 11018;11019;11020;11021 8955;8956 8956 2 0 1215200 3817000 EEMSQLTGQNSGDVNVEINVAPGKDLTK ETLQEELMALKKNHKEEMSQLTGQNSGDVN VNVEINVAPGKDLTKTLNDMRQEYEQLIAK K E E T K T 1 0 3 2 0 2 3 3 0 1 2 2 1 0 1 2 2 0 0 3 0 0 28 1 2972.4397 P35527;CON__P35527 P35527 294 321 KRT9 Keratin, type I cytoskeletal 9 yes no 3 8.7635E-39 149.04 By MS/MS 8 0 1 1 5139200 5139200 0 0 + 2626 750 2740 11022 8957 8957 1 4412100 0 0 EENAEQQALAAK NKKDELQSERNYLWREENAEQQALAAKRED LWREENAEQQALAAKREDLEKKQQLLRAAT R E E A K R 4 0 1 0 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 12 0 1300.6259 Q9UQE7 Q9UQE7 475 486 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.3277E-08 171.56 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 65115000 0 21607000 43508000 2627 2222 2741 11023;11024;11025;11026;11027 8958;8959;8960;8961 8959 4 0 9918500 9474900 EEPAPEEEEPLLLQRPER KQKASSEGTIPQVQREEPAPEEEEPLLLQR APEEEEPLLLQRPERVQTLEELEELGKEEC R E E E R V 1 2 0 0 0 1 7 0 0 0 3 0 0 0 4 0 0 0 0 0 0 0 18 1 2160.0699 Q9BVJ6 Q9BVJ6 490 507 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 3 4.4233E-13 171.56 By MS/MS 2 0 1 1 17599000 0 0 17599000 2628 1915 2742 11028 8962 8962 1 0 0 3977000 EEPFFPPPEEFVFIHAVPVEER VLCKNCVVELNFGQKEEPFFPPPEEFVFIH PEEFVFIHAVPVEERVRTAVPPKTIEECEV K E E E R V 1 1 0 0 0 0 6 0 1 1 0 0 0 4 5 0 0 0 0 3 0 0 22 0 2640.29 Q1KMD3 Q1KMD3 418 439 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2;3 4.6252E-15 119.18 By MS/MS 2 0.707 1 2 1 4 26819000 0 0 26819000 2629 1404 2743 11029;11030;11031;11032 8963;8964;8965 8964 3 0 0 5935500 EEPVSSGPEEAVGK AGHRSGSKKKRKFSKEEPVSSGPEEAVGKS KEEPVSSGPEEAVGKSSSKKKKKFHKASQE K E E G K S 1 0 0 0 0 0 4 2 0 0 0 1 0 0 2 2 0 0 0 2 0 0 14 0 1413.6624 O00567 O00567 565 578 NOP56 Nucleolar protein 56 yes yes 2 0.00037844 129.89 By MS/MS By MS/MS 3 0 2 1 1 28417000 0 3142100 25275000 2630 130 2744 11033;11034 8966;8967;8968 8968 3 0 1339500 4902200 EESAASGGAAYTK KSPPSTGSTYGSSQKEESAASGGAAYTKRY QKEESAASGGAAYTKRYLEEQKTENGKDKE K E E T K R 4 0 0 0 0 0 2 2 0 0 0 1 0 0 0 2 1 0 1 0 0 0 13 0 1240.5572 Q9Y2W1 Q9Y2W1 334 346 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.014923 83.045 By MS/MS By matching 2.5 0.5 1 1 1 1 6554600 0 3294800 3259800 2631 2252 2745 11035;11036 8969 8969 1 0 1483700 632250 EESGKPGAHVTVK SIDGRVVEPKRAVAREESGKPGAHVTVKKL AREESGKPGAHVTVKKLFVGGIKEDTEEHH R E E V K K 1 0 0 0 0 0 2 2 1 0 0 2 0 0 1 1 1 0 0 2 0 0 13 1 1337.6939 P22626 P22626 100 112 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 0.0024072 144.1 By MS/MS By MS/MS 6.2 0.98 3 3 3 1 7 3 90237000 0 83973000 6263400 2632 632 2746 11037;11038;11039;11040;11041;11042;11043;11044;11045;11046 8970;8971;8972;8973;8974;8975 8973 6 0 29054000 935970 EESGKPGAHVTVKK SIDGRVVEPKRAVAREESGKPGAHVTVKKL REESGKPGAHVTVKKLFVGGIKEDTEEHHL R E E K K L 1 0 0 0 0 0 2 2 1 0 0 3 0 0 1 1 1 0 0 2 0 0 14 2 1465.7889 P22626 P22626 100 113 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 3 0.012002 62.287 By MS/MS 6 0 3 3 0 0 0 0 2633 632 2747 11047;11048;11049 8976;8977;8978 8977 3 0 0 0 EESQIPVDEVFFHR DIRHLPVNSKEFLAKEESQIPVDEVFFHRY KEESQIPVDEVFFHRYYKKVAVKEKQKRDA K E E H R Y 0 1 0 1 0 1 3 0 1 1 0 0 0 2 1 1 0 0 0 2 0 0 14 0 1730.8264 Q03701 Q03701 803 816 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2;3 0.0003575 148.56 By MS/MS 1.5 0.5 2 2 4 34625000 0 0 34625000 2634 1157 2748 11050;11051;11052;11053 8979;8980;8981 8981 3 0 0 7741700 EETPGQRPAVTETHQLAELNEK FRLMLLEKDVNPGGKEETPGQRPAVTETHQ PAVTETHQLAELNEKKNERLRAAFGISDSY K E E E K K 2 1 1 0 0 2 5 1 1 0 2 1 0 0 2 0 3 0 0 1 0 0 22 1 2476.2194 Q9UQ35 Q9UQ35 109 130 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3;4 4.3909E-29 180.13 By MS/MS 1 0 2 2 30151000 0 0 30151000 2635 2219 2749 11054;11055 8982;8983 8982 2 0 0 6496500 EETVNDPEEAGHR AGSTSIPKRKKSTPKEETVNDPEEAGHRSG PKEETVNDPEEAGHRSGSKKKRKFSKEEPV K E E H R S 1 1 1 1 0 0 4 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 13 0 1481.6383 O00567 O00567 541 553 NOP56 Nucleolar protein 56 yes yes 2;3 0.00031641 143.89 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 57523000 0 6863200 50660000 2636 130 2750 11056;11057;11058;11059;11060 8984;8985;8986;8987 8987 4 0 2945900 9825600 EEVGEEAIVELVENGK WVPSDKSGFEPASLKEEVGEEAIVELVENG EVGEEAIVELVENGKKVKVNKDDIQKMNPP K E E G K K 1 0 1 0 0 0 6 2 0 1 1 1 0 0 0 0 0 0 0 3 0 0 16 0 1742.8574 P35579 P35579 48 63 MYH9 Myosin-9 yes yes 2 0.019819 78.903 By MS/MS 1 0 1 1 1200400 0 1200400 0 2637 752 2751 11061 8988 8988 0 0 586750 0 EEVKLEAHIR RIYGKIKEENFVSPKEEVKLEAHIRVPSFA FVSPKEEVKLEAHIRVPSFAAGRVIGKGGK K E E I R V 1 1 0 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1222.667 O00425;Q9Y6M1 O00425 484 493 IGF2BP3;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2 no no 3 0.054262 50.284 By MS/MS 3 0 1 1 7968500 0 7968500 0 2638 121;2315 2752 11062 8989 8989 1 0 3397000 0 EEVKLETHIR RIYGKLKEENFFGPKEEVKLETHIRVPASA FFGPKEEVKLETHIRVPASAAGRVIGKGGK K E E I R V 0 1 0 0 0 0 3 0 1 1 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1252.6776 Q9NZI8 Q9NZI8 484 493 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3 0.0005896 105.2 By MS/MS 2.5 0.5 1 1 2 13999000 0 13999000 0 2639 2104 2753 11063;11064 8990 8990 1 0 5992500 0 EEVQSLREEAEK ASNSARAAERSSALREEVQSLREEAEKQRV ALREEVQSLREEAEKQRVASENLRQELTSQ R E E E K Q 1 1 0 0 0 1 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1445.6998 Q14980 Q14980 1292 1303 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.6869E-106 268.98 By MS/MS 1 0 2 2 60376000 0 0 60376000 2640 1327 2754 11065;11066 8991;8992 8991 2 0 0 13009000 EEVVGGDDSDGLR TQVHHHQEVILVQTREEVVGGDDSDGLRAE TREEVVGGDDSDGLRAEDGFEDQILIPVPA R E E L R A 0 1 0 3 0 0 2 3 0 0 1 0 0 0 0 1 0 0 0 2 0 0 13 0 1346.595 P25490 P25490 110 122 YY1 Transcriptional repressor protein YY1 yes yes 2 4.7836E-17 188.04 By MS/MS 3.5 0.5 1 1 2 13398000 0 0 13398000 2641 659 2755 11067;11068 8993 8993 1 0 0 2250800 EEYEGPNKKPR RGMGPGTPAGYGRGREEYEGPNKKPRF___ GRGREEYEGPNKKPRF______________ R E E P R F 0 1 1 0 0 0 3 1 0 0 0 2 0 0 2 0 0 0 1 0 0 0 11 2 1345.6626 P23246 P23246 696 706 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 0.0072172 82.417 By MS/MS 2 0 1 1 1827400 0 1827400 0 2642 638 2756 11069 8994;8995;8996;8997 8995 4 0 822890 0 EEYLLLR DSVIFTLYNYASNQREEYLLLRLFKTALQE YNYASNQREEYLLLRLFKTALQEEIKSKVD R E E L R L 0 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 934.51238 P46940 P46940 1018 1024 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.024198 97.596 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 21738000 0 8771900 12966000 2643 835 2757 11070;11071;11072;11073 8998;8999;9000 8999 3 0 3950100 2798600 EFADSLGIPFLETSAK CDLTTKKVVDYTTAKEFADSLGIPFLETSA FADSLGIPFLETSAKNATNVEQSFMTMAAE K E F A K N 2 0 0 1 0 0 2 1 0 1 2 1 0 2 1 2 1 0 0 0 0 0 16 0 1723.8669 P62820;Q9H0U4;Q92928 P62820 141 156 RAB1A;RAB1B;RAB1C Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C yes no 2 0.029809 60.628 By MS/MS 8 0.816 1 1 1 3 31367000 0 0 31367000 2644 1034 2758 11074;11075;11076 9001 9001 1 0 0 6021900 EFAGEDTSDLFLEER PAFKEHLRDFLVQIKEFAGEDTSDLFLEER EFAGEDTSDLFLEEREIALRQADEEKHKRQ K E F E R E 1 1 0 2 0 0 4 1 0 0 2 0 0 2 0 1 1 0 0 0 0 0 15 0 1756.7792 O14980 O14980 1024 1038 XPO1 Exportin-1 yes yes 2 0.053793 61.11 By MS/MS 2 0 1 1 2368800 0 0 2368800 2645 158 2759 11077 9002 9002 0 0 0 535310 EFALSNLK YNACTLHGGKGQEQREFALSNLKAGAKDIL GKGQEQREFALSNLKAGAKDILVATDVAGR R E F L K A 1 0 1 0 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 8 0 920.49673 Q9BUQ8 Q9BUQ8 704 711 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.012364 90.862 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 18120000 0 5123100 12997000 2646 1909 2760 11078;11079;11080;11081 9003;9004 9003 2 0 2307000 2871300 EFASHLQQLQDALNELTEEHSK NQLSEENGDLSFKLREFASHLQQLQDALNE QLQDALNELTEEHSKATQEWLEKQAQLEKE R E F S K A 2 0 1 1 0 3 4 0 2 0 4 1 0 1 0 2 1 0 0 0 0 0 22 0 2566.23 Q14980 Q14980 329 350 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3;4 2.9912E-53 206.74 By MS/MS 1.33 0.471 2 1 3 58054000 0 0 58054000 2647 1327 2761 11082;11083;11084 9005;9006 9005 2 0 0 12548000 EFEMWAPDMYVVTYVGDKDSR FLVSAPLSTIINWEREFEMWAPDMYVVTYV PDMYVVTYVGDKDSRAIIRENEFSFEDNAI R E F S R A 1 1 0 3 0 0 2 1 0 0 0 1 2 1 1 1 1 1 2 3 0 0 21 1 2537.1243 Q14839 Q14839 793 813 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 1.6787E-06 93.837 By MS/MS 1.5 0.5 1 1 2 7571000 0 0 7571000 2648 1321 2762 11085;11086 9007 9007 1 0 0 1674300 EFENPEVPREDQQQQHQQR RRKGGEADNLDEFLKEFENPEVPREDQQQQ PEVPREDQQQQHQQRDVIDEPIIEEPSRLQ K E F Q R D 0 2 1 1 0 6 4 0 1 0 0 0 0 1 2 0 0 0 0 1 0 0 19 1 2421.1058 O60216 O60216 419 437 RAD21 Double-strand-break repair protein rad21 homolog yes yes 4 0.00013094 79.805 By MS/MS 2 0 1 1 3018800 0 0 3018800 2649 219 2763 11087 9008 9008 1 0 0 682180 EFEPLLNWMK DESEKTKESREAVEKEFEPLLNWMKDKALK EAVEKEFEPLLNWMKDKALKDKIEKAVVSQ K E F M K D 0 0 1 0 0 0 2 0 0 0 2 1 1 1 1 0 0 1 0 0 0 0 10 0 1305.6427 P14625 P14625 614 623 HSP90B1 Endoplasmin yes yes 2 0.0010041 110.81 By MS/MS 2.5 0.5 1 1 2 5128000 0 0 5128000 2650 560 2764 11088;11089 9009 9009 1 0 0 1086100 EFESAIVEAAR GLHMTKGLALWEAYREFESAIVEAARLEKV EAYREFESAIVEAARLEKVHSLFRRQLAIP R E F A R L 3 1 0 0 0 0 3 0 0 1 0 0 0 1 0 1 0 0 0 1 0 0 11 0 1220.6037 Q15020 Q15020 233 243 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 2 0.024043 81.95 By MS/MS 2 0 1 1 4108700 0 0 4108700 2651 1331 2765 11090 9010 9010 1 0 0 928490 EFESVLVDAFSHVAR DVIQNSKRKGPEFTREFESVLVDAFSHVAR EFESVLVDAFSHVAREADEGCKKPLERLLN R E F A R E 2 1 0 1 0 0 2 0 1 0 1 0 0 2 0 2 0 0 0 3 0 0 15 0 1704.8471 Q9NQG5 Q9NQG5 80 94 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 0.0014139 95.094 By MS/MS 6 0 1 1 4932200 0 0 4932200 2652 2033 2766 11091 9011 9011 1 0 0 737910 EFEVYGPIKR VARVNYDTTESKLRREFEVYGPIKRIHMVY SKLRREFEVYGPIKRIHMVYSKRSGKPRGY R E F K R I 0 1 0 0 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 10 1 1236.6503 P08621 P08621 122 131 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2;3 4.0035E-14 135.77 By MS/MS By MS/MS 3.9 0.943 1 2 4 3 4 6 89990000 0 53492000 36498000 2653 474 2767 11092;11093;11094;11095;11096;11097;11098;11099;11100;11101 9012;9013;9014;9015;9016;9017;9018 9018 7 0 17310000 6507000 EFGAGPLFNQILPLLMSPTLEDQER PMRKAALRQITDKAREFGAGPLFNQILPLL ILPLLMSPTLEDQERHLLVKVIDRILYKLD R E F E R H 1 1 1 1 0 2 3 2 0 1 5 0 1 2 3 1 1 0 0 0 0 0 25 0 2814.4262 O75533 O75533 525 549 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 8.3489E-29 148.29 By MS/MS 1.67 0.471 1 2 3 41223000 0 0 41223000 2654 270 2768 11102;11103;11104 9019;9020;9021;9022 9020 4 0 0 9308300 EFGFSGLNVK KNQSETLNWLSNAIKEFGFSGLNVKAFISN SNAIKEFGFSGLNVKAFISNVKTALAATNP K E F V K A 0 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 0 0 0 1 0 0 10 0 1096.5553 Q14008 Q14008 745 754 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0025855 105.14 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 58369000 0 9405800 48963000 2655 1279 2769 11105;11106;11107 9023;9024 9024 2 0 4597400 10687000 EFGLVFQR EGMSDSLLNFLQHLREFGLVFQRKRKSRRY NFLQHLREFGLVFQRKRKSRRYYPTRLAIN R E F Q R K 0 1 0 0 0 1 1 1 0 0 1 0 0 2 0 0 0 0 0 1 0 0 8 0 994.52362 Q92759 Q92759 267 274 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 0.0072732 97.071 By MS/MS By MS/MS 5 0 2 1 1 6932000 0 3363600 3568400 2656 1720 2770 11108;11109 9025;9026 9026 2 0 867020 497730 EFGNTLEDK AQGTPDVSSALDKLKEFGNTLEDKARELIS ALDKLKEFGNTLEDKARELISRIKQSELSA K E F D K A 0 0 1 1 0 0 2 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 9 0 1051.4822 P02654 P02654 39 47 APOC1 Apolipoprotein C-I;Truncated apolipoprotein C-I yes yes 2 0.0071701 93.162 By MS/MS 9 0 1 1 4792000 4792000 0 0 2657 391 2771 11110 9027 9027 1 2689800 0 0 EFHGNIIK DPPSAKAAIDWFDGKEFHGNIIKVSFATRR IDWFDGKEFHGNIIKVSFATRRPEFMRGGG K E F I K V 0 0 1 0 0 0 1 1 1 2 0 1 0 1 0 0 0 0 0 0 0 0 8 0 956.50797 Q92804 Q92804 307 314 TAF15 TATA-binding protein-associated factor 2N yes yes 2 0.0045057 101.41 By MS/MS 3 0.816 1 1 1 3 21719000 0 0 21719000 2658 1723 2772 11111;11112;11113 9028 9028 1 0 0 4220500 EFHLNESGDPSSK YFDENPYFENKVLSKEFHLNESGDPSSKST SKEFHLNESGDPSSKSTEIKWKSGKDLTKR K E F S K S 0 0 1 1 0 0 2 1 1 0 1 1 0 1 1 3 0 0 0 0 0 0 13 0 1445.6423 Q01105;P0DME0 Q01105 155 167 SET;SETSIP Protein SET;Protein SETSIP yes no 2;3 4.351E-58 236.22 By MS/MS 5.71 1.03 1 2 2 2 7 228060000 0 0 228060000 2659 1130 2773 11114;11115;11116;11117;11118;11119;11120 9029;9030;9031;9032 9031 4 0 0 34287000 EFIMFPYDSR YVSEFFKRGFGSGKREFIMFPYDSRLDDKK GSGKREFIMFPYDSRLDDKKFLYSAPRNKS R E F S R L 0 1 0 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 1 0 0 0 10 0 1303.5907 Q9UK61 Q9UK61 572 581 FAM208A Protein FAM208A yes yes 2 0.0014824 108.98 By MS/MS 1.5 0.5 1 1 2 3617200 0 0 3617200 2660 2175 2774 11121;11122 9033 9033 1 0 0 788880 EFIPLPR IYEAQPEISRAFQTREFIPLPRLLAMVMVT ISRAFQTREFIPLPRLLAMVMVTTVPLVCN R E F P R L 0 1 0 0 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 7 0 870.49634 O60287 O60287 415 421 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.038022 85.306 By MS/MS By MS/MS 1 0 2 1 1 7352300 0 2688300 4664000 2661 224 2775 11123;11124 9034;9035 9035 2 0 1314000 1004900 EFKEEGEEIPR GDDEGQKSREAPILKEFKEEGEEIPRVKPE PILKEFKEEGEEIPRVKPEEMMDERPKTRS K E F P R V 0 1 0 0 0 0 5 1 0 1 0 1 0 1 1 0 0 0 0 0 0 0 11 1 1361.6463 Q9UKV3 Q9UKV3 303 313 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2;3 2.2606E-05 112.71 By MS/MS 1.33 0.471 2 1 3 38872000 0 0 38872000 2662 2184 2776 11125;11126;11127 9036;9037 9037 2 0 0 8401900 EFLDFFWDIAKPEQETR GARPADRYGLLKHSREFLDFFWDIAKPEQE LDFFWDIAKPEQETRLAATEKLLEYLRGRP R E F T R L 1 1 0 2 0 1 3 0 0 1 1 1 0 3 1 0 1 1 0 0 0 0 17 1 2170.0371 Q9BQG0 Q9BQG0 34 50 MYBBP1A Myb-binding protein 1A yes yes 2;3 3.2779E-26 198.14 By MS/MS 2 0 2 2 6030800 0 0 6030800 2663 1885 2777 11128;11129 9038;9039 9038 2 0 0 1362800 EFLLSMANR GGFFEDESFAVKHNKEFLLSMANRGKDTNG AVKHNKEFLLSMANRGKDTNGSQFFITTKP K E F N R G 1 1 1 0 0 0 1 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 9 0 1079.5434 Q13427 Q13427 107 115 PPIG Peptidyl-prolyl cis-trans isomerase G yes yes 2 3.3897E-18 147.34 By MS/MS By MS/MS 2 0 2 1 1 13439000 0 0 13439000 2664 1246 2778 11130;11131 9040;9041 9040 2 0 0 3036900 EFNAEVHR PHSTKRFPGYDSESKEFNAEVHRKHIMGQN GYDSESKEFNAEVHRKHIMGQNVADYMRYL K E F H R K 1 1 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1000.4726 P46777 P46777 189 196 RPL5 60S ribosomal protein L5 yes yes 2 5.3875E-05 150.17 By MS/MS 6 0 1 1 8427400 0 8427400 0 2665 828 2779 11132 9042 9042 1 0 2917300 0 EFNAEVHRK PHSTKRFPGYDSESKEFNAEVHRKHIMGQN YDSESKEFNAEVHRKHIMGQNVADYMRYLM K E F R K H 1 1 1 0 0 0 2 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 9 1 1128.5676 P46777 P46777 189 197 RPL5 60S ribosomal protein L5 yes yes 2 0.016262 89.355 By MS/MS 6 0 1 1 1053800 0 1053800 0 2666 828 2780 11133 9043 9043 1 0 364800 0 EFNEDGALAVLQQFK VAHSDLDERAIEALKEFNEDGALAVLQQFK EFNEDGALAVLQQFKDSDLSHVQNKSAFLC K E F F K D 2 0 1 1 0 2 2 1 0 0 2 1 0 2 0 0 0 0 0 1 0 0 15 0 1707.8468 O60506 O60506 67 81 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2 1.5643E-17 190.57 By MS/MS By MS/MS 3.4 1.62 1 2 1 1 2 3 28768000 2100300 0 26668000 2667 227 2781 11134;11135;11136;11137;11138 9044;9045;9046 9045 3 2364500 0 4866900 EFNEEGALSVLQQFK VAYVDLDERAIDALREFNEEGALSVLQQFK EFNEEGALSVLQQFKESDLSHVQNKSAFLC R E F F K E 1 0 1 0 0 2 3 1 0 0 2 1 0 2 0 1 0 0 0 1 0 0 15 0 1737.8574 O43390 O43390 70 84 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.00028545 127.83 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 48463000 1936200 0 46526000 2668 195 2782 11139;11140;11141;11142 9047;9048 9048 2 2234000 0 9374700 EFPEMNLESVTPMTLTTLEGGNLEAK DVSGTWYLKAMTVDREFPEMNLESVTPMTL PMTLTTLEGGNLEAKVTMLISGRCQEVKAV R E F A K V 1 0 2 0 0 0 5 2 0 0 4 1 2 1 2 1 4 0 0 1 0 0 26 0 2850.3667 P31025 P31025 45 70 LCN1 Lipocalin-1 yes yes 3 4.0562E-09 87.792 By MS/MS By matching 6.25 2.33 1 2 1 2 2 7 1 20977000 20011000 0 965110 2669 716 2783;2784 11143;11144;11145;11146;11147;11148;11149;11150 9049;9050;9051;9052;9053;9054;9055;9056 9050 313 8 15430000 0 157630 EFQLFSSPHGK LLNQAQEHFGKDKSKEFQLFSSPHGKDLLF DKSKEFQLFSSPHGKDLLFKDSAHGFLKVP K E F G K D 0 0 0 0 0 1 1 1 1 0 1 1 0 2 1 2 0 0 0 0 0 0 11 0 1275.6248 P02787 P02787 300 310 TF Serotransferrin yes yes 2;3 0.0048605 101.65 By MS/MS 9.5 0.5 2 2 4 16552000 16552000 0 0 2670 399 2785 11151;11152;11153;11154 9057;9058 9058 2 13971000 0 0 EFSITDVVPYPISLR CALQCAILSPAFKVREFSITDVVPYPISLR EFSITDVVPYPISLRWNSPAEEGSSDCEVF R E F L R W 0 1 0 1 0 0 1 0 0 2 1 0 0 1 2 2 1 0 1 2 0 0 15 0 1734.9192 P34932 P34932 391 405 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 0.00038036 116.54 By MS/MS 2 0 1 1 3091000 0 3091000 0 2671 735 2786 11155 9059 9059 1 0 1391900 0 EFSPFGSITSAK IKNLDDTIDDEKLRKEFSPFGSITSAKVML LRKEFSPFGSITSAKVMLEDGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 3 1 0 0 0 0 0 12 0 1269.6241 Q13310 Q13310 313 324 PABPC4 Polyadenylate-binding protein 4 yes yes 2 0.00069519 121.83 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 121520000 0 76691000 44831000 2672 1237 2787 11156;11157;11158;11159 9060;9061;9062 9060 3 0 31202000 8524400 EFSPFGTITSAK VKNLDDGIDDERLRKEFSPFGTITSAKVMM LRKEFSPFGTITSAKVMMEGGRSKGFGFVC K E F A K V 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 2 2 0 0 0 0 0 12 0 1283.6398 P11940 P11940 313 324 PABPC1 Polyadenylate-binding protein 1 yes yes 2 0.0012132 115.78 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 171130000 0 114570000 56561000 2673 530 2788 11160;11161;11162;11163 9063;9064 9063 2 0 49013000 10726000 EFSTNNPFK IAVSKMMMVLGAKWREFSTNNPFKGSSGAS LGAKWREFSTNNPFKGSSGASVAAAAAAAV R E F F K G 0 0 2 0 0 0 1 0 0 0 0 1 0 2 1 1 1 0 0 0 0 0 9 0 1082.5033 Q14839 Q14839 211 219 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.0091882 89.55 By MS/MS 1 0 1 1 14810000 0 0 14810000 2674 1321 2789 11164 9065 9065 1 0 0 3191100 EFTGIDNLWGIHPFFIPR YQKNELKIYDRMKAKEFTGIDNLWGIHPFF GIDNLWGIHPFFIPRGPVLHRNNIADYALS K E F P R G 0 1 1 1 0 0 1 2 1 3 1 0 0 3 2 0 1 1 0 0 0 0 18 0 2158.1 Q9NU22 Q9NU22 1696 1713 MDN1 Midasin yes yes 3 0.00023571 85.16 By MS/MS 1 0 1 1 2571400 0 0 2571400 2675 2056 2790 11165 9066 9066 1 0 0 554060 EFTNVYIK KSRKEREAELGARAKEFTNVYIKNFGEDMD ELGARAKEFTNVYIKNFGEDMDDERLKDLF K E F I K N 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 1 0 0 8 0 1012.5229 P11940;Q13310 P11940 189 196 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.0094571 94.407 By matching By MS/MS By MS/MS 5.29 2.76 3 1 1 1 1 1 3 3 127340000 4675700 72017000 50646000 2676 530;1237 2791 11166;11167;11168;11169;11170;11171;11172 9067;9068;9069;9070 9067 4 5394700 30700000 10304000 EFTPPVQAAYQK LGNVLVCVLAHHFGKEFTPPVQAAYQKVVA FGKEFTPPVQAAYQKVVAGVANALAHKYH_ K E F Q K V 2 0 0 0 0 2 1 0 0 0 0 1 0 1 2 0 1 0 1 1 0 0 12 0 1377.6929 P68871 P68871 122 133 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 2 8.4903E-05 141.2 By MS/MS 5.83 3.34 1 1 1 1 1 1 6 97117000 97117000 0 0 2677 1081 2792 11173;11174;11175;11176;11177;11178 9071;9072;9073;9074;9075 9073 5 99452000 0 0 EFVEAVLELR LKDDLGNTLEKKGGKEFVEAVLELRKKNGP KKGGKEFVEAVLELRKKNGPLEVAGAAVSA K E F L R K 1 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1203.6499 O75367 O75367 240 249 H2AFY Core histone macro-H2A.1 yes yes 2 4.2388E-22 185.58 By MS/MS By MS/MS By MS/MS 3.57 1.5 1 1 1 1 3 1 1 5 93811000 4614200 9239700 79957000 2678 253 2793 11179;11180;11181;11182;11183;11184;11185 9076;9077;9078;9079;9080;9081;9082 9081 7 3696600 2381700 12184000 EFWEQKPLLIQR FESLISPIKTETFFKEFWEQKPLLIQRDDP FFKEFWEQKPLLIQRDDPALATYYGSLFKL K E F Q R D 0 1 0 0 0 2 2 0 0 1 2 1 0 1 1 0 0 1 0 0 0 0 12 1 1585.8617 Q8IUF8 Q8IUF8 57 68 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 3 0.070553 42.843 By matching By MS/MS 4 0 2 1 1 7576100 2227000 0 5349200 2679 1567 2794 11186;11187 9083 9083 1 1737400 0 873700 EGAAHAFAQYNLDQFTPVK FNDVRLLLNNDNLLREGAAHAFAQYNLDQF HAFAQYNLDQFTPVKIEGYEDQVLITEHGD R E G V K I 4 0 1 1 0 2 1 1 1 0 1 1 0 2 1 0 1 0 1 1 0 0 19 0 2106.0171 P47755 P47755 48 66 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 2;3 7.8707E-23 186.68 By MS/MS By MS/MS 6 0 3 1 2 20942000 0 6124200 14818000 2680 836 2795 11188;11189;11190 9084;9085;9086 9086 3 0 2120000 2216900 EGAASPAPETPQPTSPETSPK APRAYSDHDDRWETKEGAASPAPETPQPTS APETPQPTSPETSPKETPMQPPEIPAPAHR K E G P K E 3 0 0 0 0 1 3 1 0 0 0 1 0 0 6 3 3 0 0 0 0 0 21 0 2077.9804 Q9Y3X0 Q9Y3X0 372 392 CCDC9 Coiled-coil domain-containing protein 9 yes yes 2 1.4362E-10 112.02 By MS/MS 3 0 1 1 3933100 0 0 3933100 2681 2279 2796 11191 9087 9087 1 0 0 762830 EGAEEIDR QQIKTRPRKIKKDGKEGAEEIDRHVERRRS KIKKDGKEGAEEIDRHVERRRSRSPRRSLS K E G D R H 1 1 0 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8 0 917.40904 Q5VTL8 Q5VTL8 246 253 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2 0.0077482 96.492 By MS/MS 3 0 1 1 2690100 0 0 2690100 2682 1461 2797 11192 9088 9088 1 0 0 521740 EGAFSNFPISEETIK ESNSEIEQEIPVEQKEGAFSNFPISEETIK EGAFSNFPISEETIKLLKGRGVTFLFPIQA K E G I K L 1 0 1 0 0 0 3 1 0 2 0 1 0 2 1 2 1 0 0 0 0 0 15 0 1667.8043 Q9NR30;Q9BQ39 Q9NR30 185 199 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 2.086E-07 168.3 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 146710000 0 29369000 117340000 2683 2038;1876 2798 11193;11194;11195;11196;11197 9089;9090;9091;9092;9093 9092 5 0 13138000 24570000 EGAPIEPDPPVSHWKPEAVQYYEDGAR RHLPGVCKVSTDLLREGAPIEPDPPVSHWK HWKPEAVQYYEDGARIEAAFRNYIHRADAR R E G A R I 3 1 0 2 0 1 4 2 1 1 0 1 0 0 5 1 0 1 2 2 0 0 27 1 3036.4254 Q96HS1 Q96HS1 177 203 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 4 1.3912E-10 82.849 By MS/MS 6 0 1 1 9429800 0 0 9429800 2684 1796 2799 11198 9094 9094 1 0 0 1410800 EGATVYATGTHAQVEDGR PRVIRCMTNTPVVVREGATVYATGTHAQVE TVYATGTHAQVEDGRLMEQLLSSVGFCTEV R E G G R L 3 1 0 1 0 1 2 3 1 0 0 0 0 0 0 0 3 0 1 2 0 0 18 0 1860.8602 P32322 P32322 130 147 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes yes 3 0.0010267 69.148 By MS/MS 6 0 1 1 14172000 0 0 14172000 2685 728 2800 11199 9095 9095 1 0 0 2120300 EGAWDMEDVAPTGVR DRAPRAPLHRPQKPREGAWDMEDVAPTGVR EGAWDMEDVAPTGVRQVFSELPFPSHVLPE R E G V R Q 2 1 0 2 0 0 2 2 0 0 0 0 1 0 1 0 1 1 0 2 0 0 15 0 1631.725 Q9P1Y6 Q9P1Y6 1433 1447 PHRF1 PHD and RING finger domain-containing protein 1 yes yes 2 7.8793E-07 84.479 By MS/MS 2 0 1 1 0 0 0 0 2686 2119 2801 11200 9096 9096 1 0 0 0 EGDLIAAQAR VREEFKELKARNTKKEGDLIAAQARLKDLE RNTKKEGDLIAAQARLKDLEALLNSKEAAL K E G A R L 3 1 0 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1042.5407 P02545 P02545 124 133 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.0181E-05 152.63 By matching By MS/MS By MS/MS 4.17 1.46 3 1 1 1 1 1 4 338840000 8208200 24772000 305860000 2687 387 2802 11201;11202;11203;11204;11205;11206 9097;9098;9099 9098 3 9470400 10560000 57922000 EGDPLVFATVGSNR HNQPLFGVQFNWHSKEGDPLVFATVGSNRV KEGDPLVFATVGSNRVTLYECHSQGEIRLL K E G N R V 1 1 1 1 0 0 1 2 0 0 1 0 0 1 1 1 1 0 0 2 0 0 14 0 1460.726 O75530 O75530 107 120 EED Polycomb protein EED yes yes 2 0.00016255 152.7 By MS/MS 3.5 0.5 1 1 2 15213000 0 0 15213000 2688 268 2803 11207;11208 9100;9101 9101 2 0 0 2600800 EGDQTSNNIPADIVFVLK VKKGWKEGTKITFPKEGDQTSNNIPADIVF QTSNNIPADIVFVLKDKPHNIFKRDGSDVI K E G L K D 1 0 2 2 0 1 1 1 0 2 1 1 0 1 1 1 1 0 0 2 0 0 18 0 1958.9949 P25685 P25685 223 240 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2 1.8716E-05 105.03 By MS/MS 6 0.816 1 1 1 3 12141000 0 0 12141000 2689 660 2804 11209;11210;11211 9102 9102 1 0 0 1933900 EGDTAILSLGHGAMVAVR ______________________________ TAILSLGHGAMVAVRVQRGAQTQTRHGVLR K E G V R V 3 1 0 1 0 0 1 3 1 1 2 0 1 0 0 1 1 0 0 2 0 0 18 0 1795.9251 Q96FX7 Q96FX7 12 29 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 3 0.047708 32.55 By matching By MS/MS 6 0 2 1 1 4857500 0 986440 3871000 2690 1785 2805 11212;11213 9103 9103 1 0 341470 579150 EGDVLTLLESER DTSRSIIRNVKGPVREGDVLTLLESEREAR PVREGDVLTLLESEREARRLR_________ R E G E R E 0 1 0 1 0 0 3 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1359.6882 P62857 P62857 52 63 RPS28 40S ribosomal protein S28 yes yes 2 3.7848E-08 169.65 By MS/MS By MS/MS 10 0 2 1 1 21764000 0 12182000 9582200 2691 1041 2806 11214;11215 9104;9105 9105 2 0 61632000 20957000 EGDVLTPEQAR KRGVVTLLSDYEVCKEGDVLTPEQARVLKL EVCKEGDVLTPEQARVLKLFGYEMAEFKVT K E G A R V 1 1 0 1 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1213.5939 Q9UKD2 Q9UKD2 178 188 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0013217 111.06 By MS/MS 6.5 0.5 1 1 2 67157000 0 0 67157000 2692 2177 2807 11216;11217 9106;9107 9106 2 0 0 10948000 EGEAVVLPEVEPGLTAR TAASTSTLPAGEGPKEGEAVVLPEVEPGLT EAVVLPEVEPGLTAREQEATPRPRETTQLP K E G A R E 2 1 0 0 0 0 4 2 0 0 2 0 0 0 2 0 1 0 0 3 0 0 17 0 1764.9258 P18827 P18827 101 117 SDC1 Syndecan-1 yes yes 2 9.7727E-06 116.24 By MS/MS 1.5 0.5 1 1 2 9930600 0 0 9930600 2693 600 2808 11218;11219 9108 9108 1 0 0 2169900 EGEDMIAEEHFGSEK DEMSGRSGHFEQAIKEGEDMIAEEHFGSEK EGEDMIAEEHFGSEKIRERIIYIREQWANL K E G E K I 1 0 0 1 0 0 5 2 1 1 0 1 1 1 0 1 0 0 0 0 0 0 15 0 1706.7094 Q01082 Q01082 700 714 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00032094 119.74 By MS/MS 1 0 1 1 20129000 0 0 20129000 2694 1128 2809 11220 9109 9109 1 0 0 4337200 EGEEEQAINR KLVPDLLAIVQRKKKEGEEEQAINRQTALY QRKKKEGEEEQAINRQTALYTLKLLCKNFG K E G N R Q 1 1 1 0 0 1 4 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 10 0 1173.5262 Q9H583 Q9H583 1658 1667 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.038743 75.738 By MS/MS 1 0 1 1 1085200 0 1085200 0 2695 1984 2810 11221 9110 9110 1 0 530440 0 EGEELVMDEEAYVLYHR GPAQVYLPGRGPPLREGEELVMDEEAYVLY EELVMDEEAYVLYHRAQTGAPCLSFDIVRD R E G H R A 1 1 0 1 0 0 5 1 1 0 2 0 1 0 0 0 0 0 2 2 0 0 17 0 2080.9412 Q9BQ67 Q9BQ67 43 59 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 3 2.7446E-20 190.86 By MS/MS 4 0 1 1 10832000 0 0 10832000 2696 1878 2811 11222 9111 9111 1 0 0 1769200 EGEFTLSAMTSGIR EYPVQRNYGFQIHTKEGEFTLSAMTSGIRR KEGEFTLSAMTSGIRRNWIQTIMKHVHPTT K E G I R R 1 1 0 0 0 0 2 2 0 1 1 0 1 1 0 2 2 0 0 0 0 0 14 0 1497.7133 Q6WCQ1 Q6WCQ1 458 471 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 0.00040062 126.71 By matching By MS/MS 1.5 0.5 1 1 1 1 5512900 0 598050 4914800 2697 1507 2812 11223;11224 9112 9112 1 0 292320 1110700 EGEFVAQFK AKHELLQPFNVLYEKEGEFVAQFKFTVLLM NVLYEKEGEFVAQFKFTVLLMPNGPMRITS K E G F K F 1 0 0 0 0 1 2 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 9 0 1053.5131 Q9UQ80 Q9UQ80 312 320 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.019978 86.095 By MS/MS By MS/MS 5 0 2 1 1 8209200 8209200 0 0 2698 2220 2813 11225;11226 9113;9114 9113 2 6576600 0 0 EGELTVAQGR LRAELDEVNKSAKKREGELTVAQGRVKDLE SAKKREGELTVAQGRVKDLESLFHRSEVEL R E G G R V 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q03252 Q03252 139 148 LMNB2 Lamin-B2 yes yes 2 3.3525E-16 175.38 By matching By MS/MS By MS/MS 3.6 0.8 3 1 1 1 1 3 89233000 1741600 9246600 78244000 2699 1156 2814 11227;11228;11229;11230;11231 9115;9116 9116 2 2009500 3941800 14629000 EGETMILTLK DLQGLTVEHAIDSFREGETMILTLKDKGVL IDSFREGETMILTLKDKGVLQEEEDVLVNV R E G L K D 0 0 0 0 0 0 2 1 0 1 2 1 1 0 0 0 2 0 0 0 0 0 10 0 1133.6002 O43290 O43290 268 277 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.032343 78.516 By MS/MS 2 0 1 1 0 0 0 0 2700 193 2815 11232 9117 9117 1 0 0 0 EGETVEPYK HLGVVEAYSGLTKKKEGETVEPYKVNLSQD GLTKKKEGETVEPYKVNLSQDLEHQLQNII K E G Y K V 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 9 0 1050.487 Q08211 Q08211 267 275 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0079014 91.853 By MS/MS 2 0 1 1 9712300 0 9712300 0 2701 1182 2816 11233 9118 9118 1 0 4373600 0 EGFSIPVSADGFK FMFQGSSNTEFKSTKEGFSIPVSADGFKFG TKEGFSIPVSADGFKFGISEPGNQEKKSEK K E G F K F 1 0 0 1 0 0 1 2 0 1 0 1 0 2 1 2 0 0 0 1 0 0 13 0 1352.6612 A6NKT7;Q7Z3J3;O14715;Q99666;P49792 P49792 1887 1899 RGPD3;RGPD4;RGPD8;RGPD5;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;E3 SUMO-protein ligase RanBP2 no no 2 0.048906 69.01 By MS/MS 1 0 1 1 1954000 0 1954000 0 2702 871;17 2817 11234 9119 9119 1 0 955070 0 EGGDGEEQDVGDAGR KEESRRKRRERKQRREGGDGEEQDVGDAGR EGGDGEEQDVGDAGRLLLRVLHVSENPVPL R E G G R L 1 1 0 3 0 1 3 5 0 0 0 0 0 0 0 0 0 0 0 1 0 0 15 0 1489.5917 Q8N1G4 Q8N1G4 292 306 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.00051174 143 By MS/MS By MS/MS 3 0 2 1 1 8111100 0 483300 7627800 2703 1600 2818 11235;11236 9120;9121 9121 2 0 206030 1479400 EGGGAIEEEAKEK EGQATDEKKEPKEPREGGGAIEEEAKEKTS PREGGGAIEEEAKEKTSEAPKKDEEKGKEG R E G E K T 2 0 0 0 0 0 5 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 13 1 1345.6361 Q8TAQ2 Q8TAQ2 777 789 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 2 0.063743 91.313 By MS/MS 1 0 1 1 1816400 0 0 1816400 2704 1653 2819 11237 9122 9122 1 0 0 391360 EGGGSLAEYHAK DDLRQRLTARLEALKEGGGSLAEYHAKASE ALKEGGGSLAEYHAKASEQLKALGEKAKPV K E G A K A 2 0 0 0 0 0 2 3 1 0 1 1 0 0 0 1 0 0 1 0 0 0 12 0 1217.5677 CON__P15497 CON__P15497 206 217 yes yes 2;3 0.00069519 121.83 By MS/MS By MS/MS By MS/MS 7.5 1.12 1 6 1 1 1 6 2 2 278320000 103810000 8168200 166340000 + 2705 59 2820 11238;11239;11240;11241;11242;11243;11244;11245;11246;11247 9123;9124;9125;9126;9127;9128 9124 6 214220000 4690200 29517000 EGGLGPLNIPLLADVTR DSQFTHLAWINTPRKEGGLGPLNIPLLADV GLGPLNIPLLADVTRRLSEDYGVLKTDEGI K E G T R R 1 1 1 1 0 0 1 3 0 1 4 0 0 0 2 0 1 0 0 1 0 0 17 0 1733.9676 P32119 P32119 93 109 PRDX2 Peroxiredoxin-2 yes yes 2;3 2.8262E-05 107.14 By MS/MS By MS/MS 5.83 2.03 1 1 1 2 1 4 2 16587000 4837700 0 11749000 2706 727 2821 11248;11249;11250;11251;11252;11253 9129;9130;9131;9132;9133 9132 5 3817600 0 2084800 EGIDPTPYYWYTDQR MRIFDSEEILAGYKREGIDPTPYYWYTDQR EGIDPTPYYWYTDQRKYGTCPHGGYGLGLE R E G Q R K 0 1 0 2 0 1 1 1 0 1 0 0 0 0 2 0 2 1 3 0 0 0 15 0 1902.8424 O43776 O43776 492 506 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 8.4217E-06 163.12 By MS/MS 3.5 0.5 1 1 2 20070000 0 0 20070000 2707 211 2822 11254;11255 9134 9134 1 0 0 3557200 EGIILFK NHGEIKWIDFVRGAKEGIILFKEKAKEALG IDFVRGAKEGIILFKEKAKEALGKAKDANN K E G F K E 0 0 0 0 0 0 1 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 7 0 818.49019 P05455 P05455 270 276 SSB Lupus La protein yes yes 2 0.040085 83.287 By matching By MS/MS 3.75 0.829 2 1 1 1 3 11992000 809470 11182000 0 2708 434 2823 11256;11257;11258;11259 9135;9136 9135 2 933940 3100100 0 EGIPPDQQR PSDTIENVKAKIQDKEGIPPDQQRLIFAGK AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS K E G Q R L 0 1 0 1 0 2 1 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 9 0 1038.5094 P62987;P62979;P0CG47;P0CG48 P62987 34 42 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 0.00078533 112.37 By matching By MS/MS 7 0 3 1 2 21415000 0 1095800 20320000 2709 500 2824 11260;11261;11262 9137;9138;9139;9140;9141 9138 5 0 629220 3605600 EGKEEAEETNVLPK GLSEEDDSLVDVYYREGKEEAEETNVLPKE REGKEEAEETNVLPKEKQTKPAEAPRLQLS R E G P K E 1 0 1 0 0 0 5 1 0 0 1 2 0 0 1 0 1 0 0 1 0 0 14 1 1571.7679 Q14690 Q14690 1506 1519 PDCD11 Protein RRP5 homolog yes yes 2 0.0056664 114.72 By MS/MS 1 0 1 1 6424000 0 0 6424000 2710 1314 2825 11263 9142 9142 1 0 0 1384200 EGKHEPVQPSAHHSAEPAEAGK PLKFKKVKKDKKEEKEGKHEPVQPSAHHSA QPSAHHSAEPAEAGKAETSEGSGSAPAVPE K E G G K A 4 0 0 0 0 1 4 2 3 0 0 2 0 0 3 2 0 0 0 1 0 0 22 1 2292.0883 P51608 P51608 40 61 MECP2 Methyl-CpG-binding protein 2 yes yes 5 0.021678 35.015 By MS/MS 3 0 1 1 8309800 0 0 8309800 2711 896 2826 11264 9143 9143 1 0 0 1611700 EGLAELYEYK LAEIFKKIGSKENTKEGLAELYEYKKKYSD KENTKEGLAELYEYKKKYSDADIEPFLKNS K E G Y K K 1 0 0 0 0 0 3 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1213.5867 Q14008 Q14008 1848 1857 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0035874 101.65 By matching By MS/MS 1 0 2 1 1 24033000 1507000 0 22526000 2712 1279 2827 11265;11266 9144 9144 1 1507000 0 4853500 EGLDEVAGIINDAK ELVSKIGDKNWKIRKEGLDEVAGIINDAKF KEGLDEVAGIINDAKFIQPNIGELPTALKG K E G A K F 2 0 1 2 0 0 2 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 14 0 1442.7253 Q14008 Q14008 879 892 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 5.1169E-05 159.94 By matching By MS/MS 1.33 0.471 2 1 1 2 78657000 0 7983300 70673000 2713 1279 2828 11267;11268;11269 9145;9146 9145 2 0 3902100 15409000 EGLELLK VGDEGGFAPNILENKEGLELLKTAIGKAGY APNILENKEGLELLKTAIGKAGYTDKVVIG K E G L K T 0 0 0 0 0 0 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 800.46437 P06733 P06733 222 228 ENO1 Alpha-enolase yes yes 2 0.02811 94.262 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 1 4 36880000 0 3970700 32909000 2714 448 2829 11270;11271;11272;11273;11274 9147;9148;9149;9150 9149 4 0 1023500 4978200 EGLLATHPRPGQERPGVAR AESKESVGSRDSSKREGLLATHPRPGQERP ATHPRPGQERPGVARKEPARAEAPRKTEKE R E G A R K 2 3 0 0 0 1 2 3 1 0 2 0 0 0 3 0 1 0 0 1 0 0 19 2 2040.0977 Q66K74 Q66K74 485 503 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 4;5 0.00058986 72.184 By MS/MS 2 0 2 2 10025000 0 0 10025000 2715 1465 2830 11275;11276 9151;9152 9151 2 0 0 2265600 EGLPVALDK ERLTQDAVAKANQTKEGLPVALDKHILGFD KANQTKEGLPVALDKHILGFDTGDAVLNEA K E G D K H 1 0 0 1 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 940.52295 Q9Y224 Q9Y224 177 185 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.024175 79.474 By matching By MS/MS 6.33 0.471 2 1 1 2 25724000 0 1332500 24392000 2716 2227 2831 11277;11278;11279 9153 9153 1 0 461250 4163900 EGLTSIEEVTK VRSQVMDEATALQLREGLTSIEEVTKNLQK LQLREGLTSIEEVTKNLQKFLEGTSCIAGV R E G T K N 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1204.6187 Q15149 Q15149 4050 4060 PLEC Plectin yes yes 2 0.0013217 111.06 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 38264000 676190 16339000 21248000 2717 1348 2832 11280;11281;11282;11283 9154;9155 9154 1 676190 7986400 4627900 EGLVMVEVR QFADSKGDVGLGLVKEGLVMVEVRKEKQFQ GLGLVKEGLVMVEVRKEKQFQKVITEYLNA K E G V R K 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 3 0 0 9 0 1030.5481 Q7KZF4 Q7KZF4 858 866 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 1.675E-07 160.63 By MS/MS 2 0 1 1 16085000 0 0 16085000 2718 1518 2833 11284 9156 9156 1 0 0 3634900 EGLYITEEIYK TPATGTPVVGGLTYREGLYITEEIYKTGLL LTYREGLYITEEIYKTGLLSGLDIMEVNPS R E G Y K T 0 0 0 0 0 0 3 1 0 2 1 1 0 0 0 0 1 0 2 0 0 0 11 0 1356.6813 P05089 P05089 256 266 ARG1 Arginase-1 yes yes 2 0.012899 88.181 By MS/MS 5 0 1 1 4279100 4279100 0 0 2719 422 2834 11285 9157 9157 1 3428100 0 0 EGMFNNANVLFK RTHFTHSQFIVVSLKEGMFNNANVLFKTKF SLKEGMFNNANVLFKTKFVDGVSTVARFTQ K E G F K T 1 0 3 0 0 0 1 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 12 0 1382.6653 O95347 O95347 1147 1158 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0038346 105.78 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 14056000 0 3105300 10950000 2720 321 2835 11286;11287;11288 9158;9159 9158 2 0 1398400 2442700 EGMNIVEAMER TEWLDGKHVVFGKVKEGMNIVEAMERFGSR GKVKEGMNIVEAMERFGSRNGKTSKKITIA K E G E R F 1 1 1 0 0 0 3 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0 11 0 1277.5744 P62937 P62937 134 144 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 9.6009E-32 167.93 By MS/MS By MS/MS By MS/MS 7.83 0.373 1 5 2 1 3 102480000 1540500 2451700 98484000 2721 1053 2836;2837 11289;11290;11291;11292;11293;11294 9160;9161;9162;9163;9164 9160 508 5 1322500 1115400 15324000 EGMQLISEKPETEAVVK AELASNKEWLDKIEKEGMQLISEKPETEAV MQLISEKPETEAVVKEKLTGLHKMWEVLES K E G V K E 1 0 0 0 0 1 4 1 0 1 1 2 1 0 1 1 1 0 0 2 0 0 17 1 1886.9659 Q01082 Q01082 1336 1352 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 1.0346E-05 157.56 By MS/MS 1 0 1 1 23051000 0 0 23051000 2722 1128 2838 11295 9165 9165 1 0 0 4966600 EGNASGVSLLEALDTILPPTRPTDKPLR SPNMPWFKGWKVERKEGNASGVSLLEALDT DTILPPTRPTDKPLRLPLQDVYKIGGIGTV K E G L R L 2 2 1 2 0 0 2 2 0 1 5 1 0 0 4 2 3 0 0 1 0 0 28 2 2959.5978 Q05639 Q05639 220 247 EEF1A2 Elongation factor 1-alpha 2 yes yes 4 1.4578E-06 61.732 By MS/MS 5 0 1 1 3677400 0 0 3677400 2723 1165 2839 11296 9166 9166 1 0 0 512930 EGNEMEGEELDPLDAYMEEVKEEVK EDDDDDEDDPAEAEKEGNEMEGEELDPLDA DPLDAYMEEVKEEVKKFNMRSVKGGGGNEK K E G V K K 1 0 1 2 0 0 9 2 0 0 2 2 2 0 1 0 0 0 1 2 0 0 25 1 2911.2627 Q7L014 Q7L014 216 240 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 3 6.2916E-08 80.683 By MS/MS 2 0 1 1 1205900 0 0 1205900 2724 1520 2840 11297 9167 9167 1 0 0 272510 EGNFDIVSGTR SHHPKFIPEFIRKQKEGNFDIVSGTRYKGN RKQKEGNFDIVSGTRYKGNGGVYGWDLKRK K E G T R Y 0 1 1 1 0 0 1 2 0 1 0 0 0 1 0 1 1 0 0 1 0 0 11 0 1193.5677 O60762 O60762 137 147 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 0.00032766 125.57 By MS/MS 7 0 1 1 20849000 0 0 20849000 2725 231 2841 11298 9168 9168 1 0 0 3699600 EGNGTVMGAELR ATYEDFVEGLRVFDKEGNGTVMGAELRHVL FDKEGNGTVMGAELRHVLATLGEKMKEEEV K E G L R H 1 1 1 0 0 0 2 3 0 0 1 0 1 0 0 0 1 0 0 1 0 0 12 0 1232.5819 P05976;P08590 P05976 142 153 MYL1;MYL3 Myosin light chain 1/3, skeletal muscle isoform;Myosin light chain 3 yes no 2 0.0050837 103.01 By MS/MS 9 0 1 1 6992600 0 6992600 0 2726 437 2842 11299 9169 9169 1 0 5599400 0 EGNSPSFFNPEEAATVTSYLK GFPIIFHGVMGKDEREGNSPSFFNPEEAAT FFNPEEAATVTSYLKLLLAPSSKKGKARLS R E G L K L 2 0 2 0 0 0 3 1 0 0 1 1 0 2 2 3 2 0 1 1 0 0 21 0 2287.0645 Q9HCE1 Q9HCE1 788 808 MOV10 Putative helicase MOV-10 yes yes 2 1.0292E-10 114.64 By MS/MS 2 0 1 1 2837100 0 2837100 0 2727 2011 2843 11300 9170 9170 1 0 1277600 0 EGNVPNIIIAGPPGTGK VGNEDTVSRLEVFAREGNVPNIIIAGPPGT NVPNIIIAGPPGTGKTTSILCLARALLGPA R E G G K T 1 0 2 0 0 0 1 4 0 3 0 1 0 0 3 0 1 0 0 1 0 0 17 0 1632.8835 P35250 P35250 66 82 RFC2 Replication factor C subunit 2 yes yes 2 8.7467E-06 120.84 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 36294000 0 5851500 30443000 2728 745 2844 11301;11302;11303 9171;9172 9172 2 0 2025600 4424600 EGPAVVGQFIQDVK SIAKCVAALTRACPKEGPAVVGQFIQDVKN KEGPAVVGQFIQDVKNSRSTDSIRLLALLS K E G V K N 1 0 0 1 0 2 1 2 0 1 0 1 0 1 1 0 0 0 0 3 0 0 14 0 1485.7827 Q86VP6 Q86VP6 813 826 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.0015264 106.16 By MS/MS 2 0 1 1 3738500 0 0 3738500 2729 1554 2845 11304 9173 9173 1 0 0 844830 EGPDLDRPGSDR GPRCGSSEDLHDSVREGPDLDRPGSDRQER SVREGPDLDRPGSDRQERERARGDSEALDE R E G D R Q 0 2 0 3 0 0 1 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 12 1 1312.6008 Q7Z4V5 Q7Z4V5 643 654 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 3 0.013116 71.241 By MS/MS 2 0 1 1 2912800 0 2912800 0 2730 1533 2846 11305 9174 9174 1 0 1311700 0 EGPDLDRPGSDRQER GPRCGSSEDLHDSVREGPDLDRPGSDRQER EGPDLDRPGSDRQERERARGDSEALDEES_ R E G E R E 0 3 0 3 0 1 2 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 15 2 1725.803 Q7Z4V5 Q7Z4V5 643 657 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 4 0.021939 45.33 By MS/MS 2 0 1 1 1312900 0 1312900 0 2731 1533 2847 11306 9175 9175 0 0 591200 0 EGPFYPTLR EILTVNGELLFFRQREGPFYPTLRLLHKYP LFFRQREGPFYPTLRLLHKYPFILPHQQVD R E G L R L 0 1 0 0 0 0 1 1 0 0 1 0 0 1 2 0 1 0 1 0 0 0 9 0 1078.5447 Q9ULC4 Q9ULC4 75 83 MCTS1 Malignant T-cell-amplified sequence 1 yes yes 2 0.02141 81.296 By matching By MS/MS By MS/MS 7 0 3 1 1 1 40629000 3347300 12584000 24698000 2732 2188 2848 11307;11308;11309 9176;9177 9177 2 7214300 7225500 4382500 EGPHYTPPIPNYQPPEGR AEAIKRDPNLFPFEKEGPHYTPPIPNYQPP HYTPPIPNYQPPEGRYNDITKVYTQVEFKR K E G G R Y 0 1 1 0 0 1 2 2 1 1 0 0 0 0 6 0 1 0 2 0 0 0 18 0 2047.9752 Q9NQ50 Q9NQ50 174 191 MRPL40 39S ribosomal protein L40, mitochondrial yes yes 3 1.9183E-07 105.53 By MS/MS By MS/MS 7 0 2 1 1 20275000 0 6616300 13658000 2733 2031 2849 11310;11311 9178;9179 9179 1 0 3799100 2423600 EGPMFEAMIMNR NLLALIHRMIEFVVREGPMFEAMIMNREIN VVREGPMFEAMIMNREINNPMFRFLFENQT R E G N R E 1 1 1 0 0 0 2 1 0 1 0 0 3 1 1 0 0 0 0 0 0 0 12 0 1424.6251 O15042 O15042 441 452 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.011734 91.584 By MS/MS 1.5 0.5 1 1 2 7743800 0 0 7743800 2734 163 2850 11312;11313 9180 9180 1 0 0 1721200 EGPYDVVVLPGGNLGAQNLSESAAVK DVVICPDASLEDAKKEGPYDVVVLPGGNLG GNLGAQNLSESAAVKEILKEQENRKGLIAA K E G V K E 3 0 2 1 0 1 2 4 0 0 3 1 0 0 2 2 0 0 1 4 0 0 26 0 2583.318 Q99497 Q99497 64 89 PARK7 Protein deglycase DJ-1 yes yes 3 5.4557E-06 71.091 By matching By MS/MS 7 0 2 1 1 7526300 0 1114500 6411800 2735 1847 2851 11314;11315 9181 9181 1 0 639970 1137700 EGPYSISVLYGDEEVPR DNADGTQTVNYVPSREGPYSISVLYGDEEV PYSISVLYGDEEVPRSPFKVKVLPTHDASK R E G P R S 0 1 0 1 0 0 3 2 0 1 1 0 0 0 2 2 0 0 2 2 0 0 17 0 1908.9105 P21333 P21333 1516 1532 FLNA Filamin-A yes yes 2 9.7201E-08 163.51 By MS/MS By MS/MS 1 0 2 1 1 15680000 0 5756900 9923100 2736 623 2852 11316;11317 9182;9183 9183 2 0 2813900 2138100 EGQEDQGLTK IRITLSKHQNVQLPREGQEDQGLTKDYGNS VQLPREGQEDQGLTKDYGNSPLHRFKKPGS R E G T K D 0 0 0 1 0 2 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1103.5095 P26599;O95758 P26599 419 428 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 2 0.00014912 143.04 By MS/MS By MS/MS 4.58 1.75 2 2 2 1 3 2 7 5 53880000 0 21908000 31972000 2737 671;337 2853 11318;11319;11320;11321;11322;11323;11324;11325;11326;11327;11328;11329 9184;9185;9186;9187;9188;9189;9190 9184 7 0 7576000 6013100 EGQFKDIITK NAIITMMNHPTDAWKEGQFKDIITKVANVE TDAWKEGQFKDIITKVANVELYYRAIQFYL K E G T K V 0 0 0 1 0 1 1 1 0 2 0 2 0 1 0 0 1 0 0 0 0 0 10 1 1177.6343 Q00610;P53675 Q00610 1388 1397 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.031452 99.973 By MS/MS By matching 2.5 0.5 1 1 1 1 6548700 0 2906900 3641800 2738 1125 2854 11330;11331 9191 9191 1 0 1309000 706350 EGQGEGETQEAAAATAAAR GPAGRGDGDSGRSQREGQGEGETQEAAAAT EGETQEAAAATAAARRQEQTLRDATMEVQR R E G A R R 7 1 0 0 0 2 4 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 19 0 1816.8187 P58107 P58107 3681 3699 EPPK1 Epiplakin yes no 2;3 8.7781E-80 242.07 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 74089000 0 38649000 35440000 2739 958 2855 11332;11333;11334;11335;11336 9192;9193;9194;9195;9196 9195 5 0 18740000 7679400 EGRPSGEAFVELESEDEVK KIQNGAQGIRFIYTREGRPSGEAFVELESE SGEAFVELESEDEVKLALKKDRETMGHRYV R E G V K L 1 1 0 1 0 0 6 2 0 0 1 1 0 1 1 2 0 0 0 2 0 0 19 1 2105.9753 P31943 P31943 50 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2;3 3.7975E-79 245.26 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 35553000 0 4673400 30880000 2740 722 2856 11337;11338;11339 9197;9198;9199 9199 3 0 1204600 5043600 EGSASTEVLR RDMCLEKDTLGLFLREGSASTEVLRTEAEQ GLFLREGSASTEVLRTEAEQCKNLELKDLL R E G L R T 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 10 0 1047.5197 O75643 O75643 754 763 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.071283 62.823 By MS/MS 1 0 1 1 3986300 0 0 3986300 2741 277 2857 11340 9200 9200 0 0 0 858920 EGSEEDLDALEHMFR SGARLALILCVTKAREGSEEDLDALEHMFR EGSEEDLDALEHMFRQLRFESTMKRDPTAE R E G F R Q 1 1 0 2 0 0 4 1 1 0 2 0 1 1 0 1 0 0 0 0 0 0 15 0 1776.7625 P31944 P31944 30 44 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 0.00011008 153.11 By MS/MS 5.5 1.94 1 2 2 1 1 1 8 48242000 48242000 0 0 2742 723 2858 11341;11342;11343;11344;11345;11346;11347;11348 9201;9202;9203;9204;9205 9202 5 39082000 0 0 EGSPAPLEPEPGAAQPK SAHSSGAQTPESLSREGSPAPLEPEPGAAQ SPAPLEPEPGAAQPKLAVIQEARFAQSAPG R E G P K L 3 0 0 0 0 1 3 2 0 0 1 1 0 0 5 1 0 0 0 0 0 0 17 0 1673.8261 Q01167 Q01167 396 412 FOXK2 Forkhead box protein K2 yes yes 2 0.0016387 89.193 By MS/MS 3 0 1 1 7515000 0 0 7515000 2743 1132 2859 11349 9206 9206 1 0 0 1457600 EGVIGVTEEQVHHIVK SAREAAASLSLTLQKEGVIGVTEEQVHHIV GVIGVTEEQVHHIVKQALQRYSEDRIGLAD K E G V K Q 0 0 0 0 0 1 3 2 2 2 0 1 0 0 0 0 1 0 0 4 0 0 16 0 1772.9421 Q9UH99 Q9UH99 518 533 SUN2 SUN domain-containing protein 2 yes yes 3 0.005044 61.641 By MS/MS 3 0 1 1 7899200 0 0 7899200 2744 2148 2860 11350 9207 9207 1 0 0 1532100 EGVLTGSPEQKEEAAK CLPKKGVTSILPVLREGVLTGSPEQKEEAA GVLTGSPEQKEEAAKALGLVIRLTSADALR R E G A K A 2 0 0 0 0 1 4 2 0 0 1 2 0 0 1 1 1 0 0 1 0 0 16 1 1671.8315 Q92616 Q92616 2270 2285 GCN1L1 Translational activator GCN1 yes yes 3 0.030396 45.458 By MS/MS 1 0 1 1 2208000 0 0 2208000 2745 1712 2861 11351 9208 9208 1 0 0 475740 EGVLYVGSK EKTKQGVAEAAGKTKEGVLYVGSKTKEGVV AAGKTKEGVLYVGSKTKEGVVHGVATVAEK K E G S K T 0 0 0 0 0 0 1 2 0 0 1 1 0 0 0 1 0 0 1 2 0 0 9 0 950.5073 P37840 P37840 35 43 SNCA Alpha-synuclein no no 2 0.0012186 109.11 By MS/MS By MS/MS By MS/MS 6.9 3.21 3 1 1 1 1 2 2 3 6 6 4 10 25561000000 8756700000 2043100000 14762000000 2746 769 2862 11352;11353;11354;11355;11356;11357;11358;11359;11360;11361;11362;11363;11364;11365;11366;11367;11368;11369;11370;11371 9209;9210;9211;9212;9213;9214;9215;9216;9217;9218;9219;9220;9221;9222;9223;9224;9225;9226;9227;9228;9229;9230;9231;9232;9233 9213 25 11839000000 8278900000 19829000000 EGVLYVGSKTK EKTKQGVAEAAGKTKEGVLYVGSKTKEGVV GKTKEGVLYVGSKTKEGVVHGVATVAEKTK K E G T K E 0 0 0 0 0 0 1 2 0 0 1 2 0 0 0 1 1 0 1 2 0 0 11 1 1179.6499 P37840 P37840 35 45 SNCA Alpha-synuclein yes yes 2 0.0025345 126.49 By MS/MS 10 0 1 1 3736100000 0 0 3736100000 2747 769 2863 11372 9234 9234 1 0 0 8171200000 EGVLYVGSKTKEGVVHGVATVAEK EKTKQGVAEAAGKTKEGVLYVGSKTKEGVV TKEGVVHGVATVAEKTKEQVTNVGGAVVTG K E G E K T 2 0 0 0 0 0 3 4 1 0 1 3 0 0 0 1 2 0 1 6 0 0 24 2 2456.3275 P37840 P37840 35 58 SNCA Alpha-synuclein yes yes 3;4 4.048E-20 122.04 By MS/MS 8.5 0.5 2 2 4 67278000 0 0 67278000 2748 769 2864 11373;11374;11375;11376 9235;9236;9237 9237 3 0 0 18863000 EGVVAAAEK ______________________________ GLSKAKEGVVAAAEKTKQGVAEAAGKTKEG K E G E K T 3 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 9 0 872.46035 P37840 P37840 13 21 SNCA Alpha-synuclein no no 2 0.0010753 109.71 By MS/MS By MS/MS By MS/MS 6.4 2.22 2 1 3 2 2 2 1 2 3 3 9 551910000 8463100 59341000 484110000 2749 769 2865 11377;11378;11379;11380;11381;11382;11383;11384;11385;11386;11387;11388;11389;11390;11391 9238;9239;9240;9241;9242;9243;9244;9245;9246;9247;9248;9249;9250 9245 13 11425000 15733000 330970000 EGVVGPELHHK DPVRNRRLTVNEAVKEGVVGPELHHKLLSA EAVKEGVVGPELHHKLLSAERAVTGYKDPY K E G H K L 0 0 0 0 0 0 2 2 2 0 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1200.6251 Q15149 Q15149 2893 2903 PLEC Plectin yes yes 3 0.069022 37.995 By MS/MS 1 0 1 1 2179800 0 2179800 0 2750 1348 2866 11392 9251 9251 1 0 1065500 0 EGVVHGVATVAEK GKTKEGVLYVGSKTKEGVVHGVATVAEKTK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG K E G E K T 2 0 0 0 0 0 2 2 1 0 0 1 0 0 0 0 1 0 0 4 0 0 13 0 1294.6881 P37840 P37840 46 58 SNCA Alpha-synuclein yes yes 2;3 2.3011E-170 292.33 By MS/MS By MS/MS By MS/MS 6.88 2.88 6 2 4 5 5 5 6 9 16 14 16 20 36 67218000000 1880800000 5472700000 59864000000 2751 769 2867 11393;11394;11395;11396;11397;11398;11399;11400;11401;11402;11403;11404;11405;11406;11407;11408;11409;11410;11411;11412;11413;11414;11415;11416;11417;11418;11419;11420;11421;11422;11423;11424;11425;11426;11427;11428;11429;11430;11431;11432;11433;11434;11435;11436;11437;11438;11439;11440;11441;11442;11443;11444;11445;11446;11447;11448;11449;11450;11451;11452;11453;11454;11455;11456;11457;11458;11459;11460;11461;11462;11463;11464 9252;9253;9254;9255;9256;9257;9258;9259;9260;9261;9262;9263;9264;9265;9266;9267;9268;9269;9270;9271;9272;9273;9274;9275;9276;9277;9278;9279;9280;9281;9282;9283;9284;9285;9286;9287;9288;9289;9290;9291;9292;9293;9294;9295;9296;9297;9298;9299;9300;9301;9302;9303;9304;9305;9306;9307;9308;9309;9310;9311;9312;9313;9314;9315;9316;9317;9318;9319;9320;9321;9322;9323;9324;9325;9326;9327;9328;9329;9330;9331;9332;9333;9334;9335;9336;9337;9338;9339;9340;9341;9342;9343;9344;9345;9346;9347;9348;9349;9350;9351;9352;9353;9354;9355;9356;9357;9358;9359;9360;9361;9362;9363;9364;9365 9344 114 1706300000 22760000000 64315000000 EGVVHGVATVAEKTK GKTKEGVLYVGSKTKEGVVHGVATVAEKTK EGVVHGVATVAEKTKEQVTNVGGAVVTGVT K E G T K E 2 0 0 0 0 0 2 2 1 0 0 2 0 0 0 0 2 0 0 4 0 0 15 1 1523.8308 P37840 P37840 46 60 SNCA Alpha-synuclein yes yes 2;3 1.1001E-33 212.2 By MS/MS By MS/MS 9.09 0.793 3 4 4 2 9 10346000000 0 23110000 10322000000 2752 769 2868 11465;11466;11467;11468;11469;11470;11471;11472;11473;11474;11475 9366;9367;9368;9369;9370;9371;9372;9373;9374 9370 9 0 108950000 21765000000 EGYYGYTGAFR LCMGSGLNLCEPNNKEGYYGYTGAFRCLVE PNNKEGYYGYTGAFRCLVEKGDVAFVKHQT K E G F R C 1 1 0 0 0 0 1 3 0 0 0 0 0 1 0 0 1 0 3 0 0 0 11 0 1282.5619 P02787 P02787 531 541 TF Serotransferrin yes yes 2 5.8626E-05 143.37 By MS/MS 5.43 3.33 1 1 1 1 1 1 1 7 105050000 105050000 0 0 2753 399 2869 11476;11477;11478;11479;11480;11481;11482 9375;9376;9377;9378 9378 4 82752000 0 0 EHALLAYTLGVK VGEFEAGISKNGQTREHALLAYTLGVKQLI QTREHALLAYTLGVKQLIVGVNKMDSTEPP R E H V K Q 2 0 0 0 0 0 1 1 1 0 3 1 0 0 0 0 1 0 1 1 0 0 12 0 1313.7343 Q5VTE0;P68104;Q05639 Q5VTE0 135 146 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2;3 2.5503E-58 232.84 By MS/MS By MS/MS By MS/MS 4.89 2.18 4 2 6 4 5 4 2 1 5 10 13 554100000 23107000 150990000 380010000 2754 1076;1165 2870 11483;11484;11485;11486;11487;11488;11489;11490;11491;11492;11493;11494;11495;11496;11497;11498;11499;11500;11501;11502;11503;11504;11505;11506;11507;11508;11509;11510 9379;9380;9381;9382;9383;9384;9385;9386;9387;9388;9389;9390;9391;9392;9393;9394;9395;9396;9397;9398;9399;9400;9401;9402;9403;9404;9405;9406 9388 27 20473000 46219000 63058000 EHALTSGTIK VKLISSDGHEFIVKREHALTSGTIKAMLSG FIVKREHALTSGTIKAMLSGPGQFAENETN R E H I K A 1 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 2 0 0 0 0 0 10 0 1055.5611 Q15369 Q15369 34 43 TCEB1 Transcription elongation factor B polypeptide 1 yes yes 2 0.002854 104.2 By MS/MS 9 0 1 1 4145800 0 0 4145800 2755 1358 2871 11511 9407 9407 1 0 0 1324300 EHAVEGDCDFQLLK LDPTPVARCSVRQLKEHAVEGDCDFQLLKL KEHAVEGDCDFQLLKLDGKFSVVYAKCDSS K E H L K L 1 0 0 2 1 1 2 1 1 0 2 1 0 1 0 0 0 0 0 1 0 0 14 0 1659.7563 P02765 P02765 107 120 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes yes 3 7.7693E-13 184.1 By MS/MS 9 0 1 1 7853600 7853600 0 0 2756 395 2872 11512 9408 9408 1 4408300 0 0 EHEREEFQQEIQR LRNQRQFMDEQAAEREHEREEFQQEIQRLE EREHEREEFQQEIQRLEGQLRQAAKPQPWG R E H Q R L 0 2 0 0 0 3 5 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 13 1 1756.8129 O95613 O95613 1489 1501 PCNT Pericentrin yes yes 3 0.049902 60.157 By MS/MS 1 0 1 1 3506800 0 0 3506800 2757 331 2873 11513 9409 9409 0 0 0 755590 EHFAQFGHVR FVRRIPWTAASSQLKEHFAQFGHVRRCILP SSQLKEHFAQFGHVRRCILPFDKETGFHRG K E H V R R 1 1 0 0 0 1 1 1 2 0 0 0 0 2 0 0 0 0 0 1 0 0 10 0 1226.5945 Q9GZT3 Q9GZT3 37 46 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes yes 3 3.6827E-05 120.99 By MS/MS 9 0 1 1 11332000 0 0 11332000 2758 1955 2874 11514 9410 9410 1 0 0 3620000 EHHFGSSGMTLHER ELFAQHIVTIVHHVKEHHFGSSGMTLHERF KEHHFGSSGMTLHERFTKYLKRGTEQEAAK K E H E R F 0 1 0 0 0 0 2 2 3 0 1 0 1 1 0 2 1 0 0 0 0 0 14 0 1623.7212 Q9Y2W1 Q9Y2W1 640 653 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3;4 1.0429E-45 218.6 By MS/MS By MS/MS 2.73 1.77 4 5 2 2 1 1 4 11 277390000 0 31504000 245890000 2759 2252 2875;2876 11515;11516;11517;11518;11519;11520;11521;11522;11523;11524;11525;11526;11527;11528;11529 9411;9412;9413;9414;9415;9416;9417;9418;9419;9420;9421;9422 9416 724 11 0 14120000 52586000 EHLAQKPVFLPR VERYMNSDTTSPELREHLAQKPVFLPRNLR ELREHLAQKPVFLPRNLRRIRKCQRGREQQ R E H P R N 1 1 0 0 0 1 1 0 1 0 2 1 0 1 2 0 0 0 0 1 0 0 12 1 1433.8143 Q96ST3 Q96ST3 1117 1128 SIN3A Paired amphipathic helix protein Sin3a yes yes 3 0.028994 59.367 By MS/MS 1.5 0.5 1 1 2 24889000 0 0 24889000 2760 1836 2877 11530;11531 9423;9424 9423 2 0 0 5478200 EHLELFWSR ELAILYSKFKPQKMREHLELFWSRVNIPKV KPQKMREHLELFWSRVNIPKVLRAAEQAHL R E H S R V 0 1 0 0 0 0 2 0 1 0 2 0 0 1 0 1 0 1 0 0 0 0 9 0 1215.6037 Q00610 Q00610 1334 1342 CLTC Clathrin heavy chain 1 yes yes 2;3 0.00044481 129.72 By MS/MS 1.8 0.748 2 2 1 5 19089000 0 0 19089000 2761 1125 2878 11532;11533;11534;11535;11536 9425;9426;9427;9428 9427 3 0 0 4114700 EHLMLEEELR IEIERLQSLTENLTKEHLMLEEELRNLRLE ENLTKEHLMLEEELRNLRLEYDDLRRGRSE K E H L R N 0 1 0 0 0 0 4 0 1 0 3 0 1 0 0 0 0 0 0 0 0 0 10 0 1297.6336 P15924 P15924 1716 1725 DSP Desmoplakin yes yes 2 0.054651 71.614 By MS/MS 1 0 1 1 15721000 0 0 15721000 2762 572 2879 11537 9429 9429 1 0 0 3387300 EHMGNVVEALIALTN TEMEISRAAAERSLREHMGNVVEALIALTN EHMGNVVEALIALTN_______________ R E H T N - 2 0 2 0 0 0 2 1 1 1 2 0 1 0 0 0 1 0 0 2 0 0 15 0 1609.8134 Q9NX55 Q9NX55 115 129 HYPK Huntingtin-interacting protein K yes yes 2 0.00034606 134.75 By MS/MS 8.5 0.5 1 1 2 3349600 3349600 0 0 2763 2085 2880 11538;11539 9430;9431 9430 2 2709200 0 0 EHMQPTHPIR ESSEKAYSEAHEISKEHMQPTHPIRLGLAL HEISKEHMQPTHPIRLGLALNYSVFYYEIQ K E H I R L 0 1 0 0 0 1 1 0 2 1 0 0 1 0 2 0 1 0 0 0 0 0 10 0 1244.6084 P61981 P61981 163 172 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 3 0.00090678 98.044 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 4329700 0 1223900 3105900 2764 1003 2881 11540;11541;11542;11543 9432;9433;9434 9432 3 0 702750 530220 EHPWEVMPDLYFYR MLAREVLRMRGTISREHPWEVMPDLYFYRD REHPWEVMPDLYFYRDPEEIEKEEQAAAEK R E H Y R D 0 1 0 1 0 0 2 0 1 0 1 0 1 1 2 0 0 1 2 1 0 0 14 0 1880.8556 P08865 P08865 192 205 RPSA 40S ribosomal protein SA yes yes 3 0.0048147 69.352 By MS/MS 5 0 1 1 1335500 0 0 1335500 2765 480 2882 11544 9435 9435 0 0 0 186280 EHPWEVMPDLYFYRDPEEIEKEEQAAAEK MLAREVLRMRGTISREHPWEVMPDLYFYRD DPEEIEKEEQAAAEKAVTKEEFQGEWTAPA R E H E K A 3 1 0 2 0 1 8 0 1 1 1 2 1 1 3 0 0 1 2 1 0 0 29 2 3577.6348 P08865 P08865 192 220 RPSA 40S ribosomal protein SA yes yes 4 0.00093215 42.367 By MS/MS 5.5 0.5 1 1 2 16418000 0 0 16418000 2766 480 2883 11545;11546 9436 9436 1 0 0 2316200 EHQLASASELPLGSR DNPALNAQAALSQAREHQLASASELPLGSR EHQLASASELPLGSRPAPQPPVPRPEHCEG R E H S R P 2 1 0 0 0 1 2 1 1 0 3 0 0 0 1 3 0 0 0 0 0 0 15 0 1593.8111 O60232 O60232 98 112 SSSCA1 Sjoegren syndrome/scleroderma autoantigen 1 yes yes 2 0.00018962 151.13 By MS/MS 7 0 1 1 8918100 0 0 8918100 2767 222 2884 11547 9437 9437 1 0 0 1582500 EHRPHTAVLMEK EDDGKLLCVMCRESREHRPHTAVLMEKAAQ ESREHRPHTAVLMEKAAQPHREKILNHLST R E H E K A 1 1 0 0 0 0 2 0 2 0 1 1 1 0 1 0 1 0 0 1 0 0 12 1 1446.7402 Q12899 Q12899 129 140 TRIM26 Tripartite motif-containing protein 26 yes yes 3 0.0029602 89.747 By MS/MS 3.5 0.5 1 1 2 5177500 0 0 5177500 2768 1208 2885 11548;11549 9438 9438 1 0 0 985670 EHTALLK KAIFAGYKRGLRNQREHTALLKIEGVYARD KRGLRNQREHTALLKIEGVYARDETEFYLG R E H L K I 1 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 1 0 0 0 0 0 7 0 810.45995 P18077 P18077 23 29 RPL35A 60S ribosomal protein L35a yes yes 2 0.026015 96.048 By MS/MS 9.5 0.5 1 1 2 949500 0 0 949500 2769 593 2886 11550;11551 9439;9440 9439 2 0 0 396320 EHTSHLEAELEK VEKLKGELESSDQVREHTSHLEAELEKHMA QVREHTSHLEAELEKHMAAASAECQNYAKE R E H E K H 1 0 0 0 0 0 4 0 2 0 2 1 0 0 0 1 1 0 0 0 0 0 12 0 1421.6787 Q9P2E9 Q9P2E9 1196 1207 RRBP1 Ribosome-binding protein 1 yes yes 2 1.0317E-72 242.59 By MS/MS 1.5 0.5 1 1 2 5402400 0 0 5402400 2770 2122 2887 11552;11553 9441 9441 1 0 0 1177900 EHVAHLLFLR VQRENGTVSRYEGGREHVAHLLFLRDTKTL YEGGREHVAHLLFLRDTKTLMFGSYLDDEK R E H L R D 1 1 0 0 0 0 1 0 2 0 3 0 0 1 0 0 0 0 0 1 0 0 10 0 1233.6982 P19652 P19652 114 123 ORM2 Alpha-1-acid glycoprotein 2 yes yes 3 3.6827E-05 120.99 By MS/MS 8.5 0.5 1 1 2 10631000 10631000 0 0 2771 611 2888 11554;11555 9442;9443 9443 2 6162800 0 0 EHVEEISELFYDAK ANLLAKINGKDSIEKEHVEEISELFYDAKS KEHVEEISELFYDAKSSAKILADQQDKYMK K E H A K S 1 0 0 1 0 0 4 0 1 1 1 1 0 1 0 1 0 0 1 1 0 0 14 0 1707.7992 Q9Y265 Q9Y265 428 441 RUVBL1 RuvB-like 1 yes yes 2 1.188E-73 183.99 By MS/MS 4 0 1 1 0 0 0 0 2772 2234 2889 11556 9444 9444 1 0 0 0 EHVIEALR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP RTKLQNKEHVIEALRRAKFKFPGRQKIHIS K E H L R R 1 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 965.52943 P27635 P27635 146 153 RPL10 60S ribosomal protein L10 yes yes 2 4.555E-16 181.81 By MS/MS By MS/MS 6.8 1.33 1 1 2 1 1 4 349820000 0 35583000 314240000 2773 678 2890 11557;11558;11559;11560;11561 9445;9446;9447;9448;9449 9449 5 0 20432000 55247000 EHVIEALRR IGQVIMSIRTKLQNKEHVIEALRRAKFKFP TKLQNKEHVIEALRRAKFKFPGRQKIHISK K E H R R A 1 2 0 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 0 1 0 0 9 1 1121.6305 P27635 P27635 146 154 RPL10 60S ribosomal protein L10 yes yes 2 3.7418E-05 151.04 By MS/MS By matching 7 0 2 1 1 28430000 0 9568900 18861000 2774 678 2891 11562;11563 9450 9450 1 0 5494500 3346700 EHYLEDILAK GCPVIKVPGFMYPVKEHYLEDILAKLGKHQ MYPVKEHYLEDILAKLGKHQYLHRHRHHES K E H A K L 1 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 1 0 0 0 10 0 1229.6292 Q7L2E3 Q7L2E3 620 629 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2;3 4.4211E-07 158.76 By MS/MS 1.67 0.471 1 2 3 25822000 0 0 25822000 2775 1522 2892 11564;11565;11566 9451;9452;9453 9452 2 0 0 5794900 EHYMELVYR VSGASMTTRGCFFTREHYMELVYRGLTDKV GCFFTREHYMELVYRGLTDKVGRVKLLSPS R E H Y R G 0 1 0 0 0 0 2 0 1 0 1 0 1 0 0 0 0 0 2 1 0 0 9 0 1238.5754 O95602 O95602 651 659 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.023174 60.91 By MS/MS 1 0 1 1 2997600 0 0 2997600 2776 330 2893 11567 9454 9454 0 0 0 645870 EIAAVFQDNR SPPQEEIGLIRLLRREIAAVFQDNRMIAVC RLLRREIAAVFQDNRMIAVCQNVALSAEDK R E I N R M 2 1 1 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1161.5778 Q7Z7H8 Q7Z7H8 85 94 MRPL10 39S ribosomal protein L10, mitochondrial yes yes 2 0.0029483 103.87 By MS/MS 7 0 1 1 22063000 0 0 22063000 2777 1536 2894 11568 9455 9455 1 0 0 3914900 EIAEAYLGK FYPEEVSSMVLTKMKEIAEAYLGKTVTNAV VLTKMKEIAEAYLGKTVTNAVVTVPAYFND K E I G K T 2 0 0 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 992.51786 P11142 P11142 129 137 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 0.015694 85.064 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 181770000 0 42546000 139220000 2778 517 2895 11569;11570;11571;11572 9456;9457 9456 2 0 18282000 27002000 EIAEAYLGYPVTNAVITVPAYFNDSQR FYPEEISSMVLTKMKEIAEAYLGYPVTNAV NAVITVPAYFNDSQRQATKDAGVIAGLNVL K E I Q R Q 4 1 2 1 0 1 2 1 0 2 1 0 0 1 2 1 2 0 3 3 0 0 27 0 3000.4869 P0DMV9;P0DMV8 P0DMV9 129 155 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 7.1731E-21 105.24 By MS/MS 3 0 1 1 31893000 0 0 31893000 2779 501 2896 11573 9458 9458 1 0 0 6185800 EIAENALGK QGRSTGEAFVQFASKEIAENALGKHKERIG VQFASKEIAENALGKHKERIGHRYIEIFRS K E I G K H 2 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 943.49746 P31942 P31942 68 76 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 0.016963 84.227 By MS/MS By MS/MS By MS/MS 6.86 2.03 2 3 2 1 3 3 246320000 17989000 81407000 146920000 2780 721 2897 11574;11575;11576;11577;11578;11579;11580 9459;9460;9461;9462;9463;9464 9461 6 23952000 33831000 37554000 EIAQDFK TELLIRKLPFQRLVREIAQDFKTDLRFQSS LPFQRLVREIAQDFKTDLRFQSSAVMALQE R E I F K T 1 0 0 1 0 1 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 7 0 849.42323 P84243;Q16695;P68431;Q71DI3 Q71DI3 74 80 H3F3A;HIST3H3;HIST1H3A;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.2 no no 2 0.012539 116.11 By MS/MS By MS/MS By MS/MS 6.72 2.66 1 1 1 1 1 2 2 3 4 2 2 10 6 6217700000 231750000 1529200000 4456800000 2781 1114;1512 2898 11581;11582;11583;11584;11585;11586;11587;11588;11589;11590;11591;11592;11593;11594;11595;11596;11597;11598 9465;9466;9467;9468;9469;9470;9471;9472;9473;9474;9475;9476;9477;9478 9466 13 190270000 769130000 1052100000 EIAQDFKTDLR TELLIRKLPFQRLVREIAQDFKTDLRFQSS RLVREIAQDFKTDLRFQSSAVMALQEASEA R E I L R F 1 1 0 2 0 1 1 0 0 1 1 1 0 1 0 0 1 0 0 0 0 0 11 1 1334.683 P84243;Q16695;P68431;Q71DI3 Q71DI3 74 84 H3F3A;HIST3H3;HIST1H3A;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.2 no no 2;3 4.3607E-18 185.6 By matching By MS/MS By MS/MS 6.3 3.04 4 1 1 3 4 4 3 3 1 12 10 3111100000 4065900 716180000 2390900000 2782 1114;1512 2899 11599;11600;11601;11602;11603;11604;11605;11606;11607;11608;11609;11610;11611;11612;11613;11614;11615;11616;11617;11618;11619;11620;11621 9479;9480;9481;9482;9483;9484;9485;9486;9487;9488;9489;9490;9491;9492;9493;9494;9495;9496;9497;9498;9499;9500;9501 9488 23 4065900 467900000 408110000 EIASTLMESEMMEILSVLAK HRGAVVVLNMVEASREIASTLMESEMMEIL LMESEMMEILSVLAKGDHSPVTRAAAACLD R E I A K G 2 0 0 0 0 0 4 0 0 2 3 1 3 0 0 3 1 0 0 1 0 0 20 0 2224.1041 Q9H3U1 Q9H3U1 895 914 UNC45A Protein unc-45 homolog A yes yes 3 0.0046183 51.566 By MS/MS 2 0 1 1 657750 0 0 657750 2783 1980 2900 11622 9502 9502 1 0 0 148640 EIAVHIGDRDNAVR YGMNVCQPTPGKALKEIAVHIGDRDNAVRN KEIAVHIGDRDNAVRNAALNTIVTVYNVHG K E I V R N 2 2 1 2 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 2 0 0 14 1 1563.8118 Q14008 Q14008 1370 1383 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 1.2141E-05 117.07 By MS/MS 1.33 0.471 2 1 3 75508000 0 0 75508000 2784 1279 2901 11623;11624;11625 9503;9504;9505 9504 2 0 0 16378000 EICWNLQNIR FRRGWVTFDRSVNIKEICWNLQNIRLRECE SVNIKEICWNLQNIRLRECELSPGVNRDLT K E I I R L 0 1 2 0 1 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 10 0 1344.6609 Q9BXP5 Q9BXP5 477 486 SRRT Serrate RNA effector molecule homolog yes yes 2 0.000313 124.08 By MS/MS 2.5 0.5 1 1 2 6193800 0 0 6193800 2785 1929 2902 11626;11627 9506 9506 1 0 0 1344800 EIDDTYIEDAADVDAR EIVLPENAEKELEEREIDDTYIEDAADVDA IDDTYIEDAADVDARKQAIRDAERVKEMKR R E I A R K 3 1 0 5 0 0 2 0 0 2 0 0 0 0 0 0 1 0 1 1 0 0 16 0 1809.7905 Q99459 Q99459 506 521 CDC5L Cell division cycle 5-like protein yes yes 2 1.1114E-08 171.26 By MS/MS 3 1 1 1 2 15674000 0 0 15674000 2786 1843 2903 11628;11629 9507;9508 9507 2 0 0 3072200 EIDLLLGQTDDTR AVLKNEKLRDKERRKEIDLLLGQTDDTRYH RKEIDLLLGQTDDTRYHVLVNLGKKITDYG K E I T R Y 0 1 0 3 0 1 1 1 0 1 3 0 0 0 0 0 2 0 0 0 0 0 13 0 1487.7468 O75643 O75643 156 168 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00023345 147.37 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 26697000 0 5570200 21127000 2787 277 2904 11630;11631;11632 9509;9510 9510 1 0 2722600 4579400 EIEAEIQALR AGYIEKVHYLEQQNKEIEAEIQALRQKQAS EQQNKEIEAEIQALRQKQASHAQLGDAYDQ K E I L R Q 2 1 0 0 0 1 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1170.6245 P07197 P07197 128 137 NEFM Neurofilament medium polypeptide yes yes 2 0.0039306 100.45 By MS/MS 4 0 1 1 32681000 0 0 32681000 2788 454 2905 11633 9511 9511 1 0 0 5337900 EIEELQSQAQALSQEGK KKQQMLENQMEVRKKEIEELQSQAQALSQE EELQSQAQALSQEGKSTDEVDSKRLTVQTK K E I G K S 2 0 0 0 0 4 4 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 17 0 1886.9222 Q01082 Q01082 1435 1451 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 1.651E-227 316.42 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 40733000 0 13145000 27589000 2789 1128 2906 11634;11635;11636 9512;9513 9512 2 0 6424900 5973000 EIEESKEPGVEDTEWSNTQTEEAIQTR NGGLKAKTITKKRKKEIEESKEPGVEDTEW TEWSNTQTEEAIQTRSRTRKRVQK______ K E I T R S 1 1 1 1 0 2 8 1 0 2 0 1 0 0 1 2 4 1 0 1 0 0 27 1 3134.4164 Q99986 Q99986 361 387 VRK1 Serine/threonine-protein kinase VRK1 yes yes 3 2.209E-15 98.491 By MS/MS 4 0 1 1 5833500 0 0 5833500 2790 1871 2907 11637 9514 9514 1 0 0 952800 EIEIQAHLHHPNILR KSQIEKEGVEHQLRREIEIQAHLHHPNILR EIEIQAHLHHPNILRLYNYFYDRRRIYLIL R E I L R L 1 1 1 0 0 1 2 0 3 3 2 0 0 0 1 0 0 0 0 0 0 0 15 0 1818.9853 Q96GD4 Q96GD4 125 139 AURKB Aurora kinase B yes yes 4 0.018247 51.939 By matching By MS/MS 6 0 2 1 1 10887000 0 1306400 9580200 2791 1790 2908 11638;11639 9515 9515 1 0 452220 1433300 EIELIGSGGFGQVFK ETKYTVDKRFGMDFKEIELIGSGGFGQVFK EIELIGSGGFGQVFKAKHRIDGKTYVIKRV K E I F K A 0 0 0 0 0 1 2 4 0 2 1 1 0 2 0 1 0 0 0 1 0 0 15 0 1579.8246 P19525 P19525 269 283 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00046414 139.86 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 2 3 16031000 0 1413400 14617000 2792 609 2909 11640;11641;11642;11643;11644 9516;9517 9517 2 0 527810 2757300 EIELPSGQLMGLFNR LGIGLQHKSVDQLEKEIELPSGQLMGLFNR EIELPSGQLMGLFNRIIRKVVKLFNEVQEK K E I N R I 0 1 1 0 0 1 2 2 0 1 3 0 1 1 1 1 0 0 0 0 0 0 15 0 1702.8712 Q9H0A0 Q9H0A0 883 897 NAT10 N-acetyltransferase 10 yes yes 2;3 1.9873E-59 238.01 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 18970000 0 5705900 13264000 2793 1959 2910 11645;11646;11647;11648;11649;11650;11651 9518;9519;9520;9521;9522 9521 5 0 2598300 2912800 EIELTHR LILDEQGRTVDATGKEIELTHRMPTLKANI RTVDATGKEIELTHRMPTLKANIRAVKREQ K E I H R M 0 1 0 0 0 0 2 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 896.47158 O43395 O43395 271 277 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.070804 69.383 By MS/MS 3 0 1 1 6130500 0 6130500 0 2794 196 2911 11652 9523 9523 0 0 2613400 0 EIEMASEERPPAQALEIMMGLK AEPPQPTAVPLELAKEIEMASEERPPAQAL ERPPAQALEIMMGLKTTDMAPSKETEMALA K E I L K T 3 1 0 0 0 1 5 1 0 2 2 1 3 0 2 1 0 0 0 0 0 0 22 1 2472.2063 P27816 P27816 225 246 MAP4 Microtubule-associated protein 4 yes yes 3 6.3505E-07 83.395 By MS/MS 1.5 0.5 1 1 2 13363000 0 0 13363000 2795 683 2912 11653;11654 9524;9525 9525 2 0 0 2944600 EIETTGQIMHR SQKDEESSEGTHHAKEIETTGQIMHRAENR HHAKEIETTGQIMHRAENRKKFLRSIIKTT K E I H R A 0 1 0 0 0 1 2 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 11 0 1313.6398 Q6KC79 Q6KC79 1709 1719 NIPBL Nipped-B-like protein yes yes 2;3 3.7174E-36 214.9 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 26454000 0 5556600 20897000 2796 1480 2913 11655;11656;11657;11658;11659 9526;9527;9528;9529 9528 4 0 2716000 4515500 EIETYHNLLEGGQEDFESSGAGK QEYSLLLSIKMRLEKEIETYHNLLEGGQED LEGGQEDFESSGAGKIGLGGRGGSGGSYGR K E I G K I 1 0 1 1 0 1 5 4 1 1 2 1 0 1 0 2 1 0 1 0 0 0 23 0 2509.1245 P35527;CON__P35527 P35527 450 472 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 0 601.75 By MS/MS By MS/MS By MS/MS 4.92 2.74 5 4 6 5 4 3 3 4 5 1 19 3 18 4111800000 2175400000 38673000 1897700000 + 2797 750 2914 11660;11661;11662;11663;11664;11665;11666;11667;11668;11669;11670;11671;11672;11673;11674;11675;11676;11677;11678;11679;11680;11681;11682;11683;11684;11685;11686;11687;11688;11689;11690;11691;11692;11693;11694;11695;11696;11697;11698;11699 9530;9531;9532;9533;9534;9535;9536;9537;9538;9539;9540;9541;9542;9543;9544;9545;9546;9547;9548;9549;9550;9551;9552;9553;9554;9555;9556;9557;9558;9559;9560;9561;9562;9563;9564;9565;9566;9567;9568;9569;9570 9533 41 1895500000 17736000 371200000 EIEVGGGR DLKAQLRELNITAAKEIEVGGGRKAIIIFV LNITAAKEIEVGGGRKAIIIFVPVPQLKSF K E I G R K 0 1 0 0 0 0 2 3 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 815.41373 P62081 P62081 50 57 RPS7 40S ribosomal protein S7 yes yes 2 0.0017838 111.04 By matching By MS/MS By MS/MS 6.5 2.65 2 1 2 2 1 1 3 4 171980000 442300 29505000 142030000 2798 1005 2915 11700;11701;11702;11703;11704;11705;11706;11707 9571;9572;9573;9574 9571 4 510310 12234000 29077000 EIEYEVVR HTSQVLVDKSLKGWKEIEYEVVRDAYGNCV KSLKGWKEIEYEVVRDAYGNCVTVCNMENL K E I V R D 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 8 0 1035.5237 P27708;P31327 P27708 599 606 CAD;CPS1 CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase;Carbamoyl-phosphate synthase [ammonia], mitochondrial yes no 2 0.026661 79.116 By MS/MS 1 0 1 1 8320400 0 8320400 0 2799 681 2916 11708 9575 9575 1 0 4066900 0 EIFGLYGQTTGK NKIDRTDAISEEKLREIFGLYGQTTGKGNV KLREIFGLYGQTTGKGNVTLKELNARPMEV R E I G K G 0 0 0 0 0 1 1 3 0 1 1 1 0 1 0 0 2 0 1 0 0 0 12 0 1312.6663 Q9NR31 Q9NR31 149 160 SAR1A GTP-binding protein SAR1a yes yes 2 0.00040353 127.76 By MS/MS By MS/MS 7 0 2 1 1 18329000 0 2648000 15681000 2800 2039 2917 11709;11710 9576;9577 9577 2 0 1520500 2782600 EIFITFR GVEDGQTVRMPVGKREIFITFRVQKSPVFR VRMPVGKREIFITFRVQKSPVFRRDGADIH R E I F R V 0 1 0 0 0 0 1 0 0 2 0 0 0 2 0 0 1 0 0 0 0 0 7 0 924.5069 Q96EY1 Q96EY1 326 332 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 0.0072048 124.89 By MS/MS 5 0 1 1 15454000 0 0 15454000 2801 1778 2918 11711 9578 9578 1 0 0 2155500 EIFLSQPILLELEAPLK QLTENEIRGLCLKSREIFLSQPILLELEAP FLSQPILLELEAPLKICGDIHGQYYDLLRL R E I L K I 1 0 0 0 0 1 3 0 0 2 5 1 0 1 2 1 0 0 0 0 0 0 17 0 1952.1234 P62140;P62136;P36873 P62136 44 60 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 4.6787E-05 103.44 By MS/MS 6 0 1 1 2125300 0 2125300 0 2802 1006;1007;763 2919 11712 9579 9579 1 0 735710 0 EIFLTVPVGGGESLR IYNISGNGSPLADSKEIFLTVPVGGGESLR EIFLTVPVGGGESLRLLASDLQRHSIAQLD K E I L R L 0 1 0 0 0 0 2 3 0 1 2 0 0 1 1 1 1 0 0 2 0 0 15 0 1572.8512 Q53HL2 Q53HL2 226 240 CDCA8 Borealin yes yes 2 0.0005619 107.09 By MS/MS 6 0 1 1 15345000 0 0 15345000 2803 1429 2920 11713 9580 9580 1 0 0 2295800 EIFMQVEDERR AAANKLVRRTEKKLKEIFMQVEDERRHADQ KKLKEIFMQVEDERRHADQYKEQMEKANAR K E I R R H 0 2 0 1 0 1 3 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 11 1 1450.6875 P35580 P35580 1853 1863 MYH10 Myosin-10 yes yes 3 0.0043136 81.525 By MS/MS 1 0 1 1 21103000 0 0 21103000 2804 753 2921 11714 9581 9581 1 0 0 4546900 EIFNFVLK CNFTKSMEEDPQTSREIFNFVLKAIRPQID EDPQTSREIFNFVLKAIRPQIDLKRYAVPS R E I L K A 0 0 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 8 0 1008.5644 P78527 P78527 247 254 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 1;2 0.034304 112.37 By matching By MS/MS By MS/MS 1.5 0.764 4 1 1 1 2 3 23465000 449090 8274700 14741000 2805 1089 2922 11715;11716;11717;11718;11719;11720 9582;9583;9584 9582 2 449090 4018600 3138300 EIGDYIR THYTPLACGSNPLKREIGDYIRTGFINLDK CGSNPLKREIGDYIRTGFINLDKPSNPSSH R E I I R T 0 1 0 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 7 0 864.43413 O60832 O60832 82 88 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.044859 78.616 By MS/MS 4 0 1 1 6270400 0 6270400 0 2806 235 2923 11721 9585 9585 1 0 2080900 0 EIGELTQLK QILSLRDNDLISLPKEIGELTQLKELHIQG LISLPKEIGELTQLKELHIQGNRLTVLPPE K E I L K E 0 0 0 0 0 1 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1029.5706 Q15404 Q15404 175 183 RSU1 Ras suppressor protein 1 yes yes 2 0.042528 73.665 By MS/MS 6 0 1 1 3592700 0 0 3592700 2807 1363 2924 11722 9586 9586 1 0 0 537500 EIGELYLPK LPETLKRWRDSLEFREIGELYLPKFSISRD DSLEFREIGELYLPKFSISRDYNLNDILLQ R E I P K F 0 0 0 0 0 0 2 1 0 1 2 1 0 0 1 0 0 0 1 0 0 0 9 0 1060.5805 P01011 P01011 307 315 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 0.0039111 98.997 By MS/MS 9.5 0.5 1 1 2 7021500 7021500 0 0 2808 368 2925 11723;11724 9587 9587 1 4466200 0 0 EIGQSVDEVEK AEAWLLGQEPYLSSREIGQSVDEVEKLIKR LSSREIGQSVDEVEKLIKRHEAFEKSAATW R E I E K L 0 0 0 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 0 2 0 0 11 0 1231.5932 Q01082 Q01082 2044 2054 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00071275 117.3 By MS/MS By MS/MS 1 0 2 1 1 62834000 0 29753000 33082000 2809 1128 2926 11725;11726 9588;9589 9589 2 0 14543000 7128000 EIGWTDVGGWTGQGGSILGTK AIYDGFDGFAKGQIKEIGWTDVGGWTGQGG VGGWTGQGGSILGTKRVLPGKYLEEIATQM K E I T K R 0 0 0 1 0 1 1 7 0 2 1 1 0 0 0 1 3 2 0 1 0 0 21 0 2118.0382 Q01813 Q01813 460 480 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 0.0057057 61.649 By MS/MS 3 0 1 1 9377500 0 0 9377500 2810 1139 2927 11727 9590 9590 1 0 0 1818800 EIIDLVLDR DAANNYARGHYTIGKEIIDLVLDRIRKLAD HYTIGKEIIDLVLDRIRKLADQCTGLQGFL K E I D R I 0 1 0 2 0 0 1 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1084.6128 P68363;Q71U36;Q9BQE3 P68363 113 121 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2 2.0909E-23 188.76 By MS/MS By MS/MS By MS/MS 4.56 2.27 2 2 2 3 3 2 2 1 1 2 7 9 1755700000 44959000 319510000 1391200000 2811 1077;1515;1883 2928 11728;11729;11730;11731;11732;11733;11734;11735;11736;11737;11738;11739;11740;11741;11742;11743;11744;11745 9591;9592;9593;9594;9595;9596;9597;9598;9599;9600;9601;9602;9603;9604;9605;9606;9607;9608;9609;9610;9611 9607 21 35256000 89968000 223370000 EIIELPLKQPELFK YDMIGGLSSQLKAIREIIELPLKQPELFKS REIIELPLKQPELFKSYGIPAPRGVLLYGP R E I F K S 0 0 0 0 0 1 3 0 0 2 3 2 0 1 2 0 0 0 0 0 0 0 14 1 1695.9811 Q8NB90 Q8NB90 367 380 SPATA5 Spermatogenesis-associated protein 5 yes yes 2;3 0.009429 103.34 By MS/MS 1.67 0.471 1 2 3 12533000 0 0 12533000 2812 1624 2929 11746;11747;11748 9612;9613 9612 2 0 0 2821300 EIIEVLQK LLYLLSPRDPAHTVREIIEVLQKGDGNAHS DPAHTVREIIEVLQKGDGNAHSKKDTEVRR R E I Q K G 0 0 0 0 0 1 2 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q15397 Q15397 457 464 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0061689 98.418 By matching By MS/MS 2.5 0.5 1 1 1 1 25590000 0 1025700 24564000 2813 1362 2930 11749;11750 9614 9614 1 0 461890 4764200 EIIKQEESVDPDYWEK VVREEEMGEEEEVEREIIKQEESVDPDYWE IIKQEESVDPDYWEKLLRHHYEQQQEDLAR R E I E K L 0 0 0 2 0 1 4 0 0 2 0 2 0 0 1 1 0 1 1 1 0 0 16 1 2006.9473 Q14839 Q14839 1301 1316 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 1.4828E-17 188.13 By MS/MS 1 0 1 1 12666000 0 0 12666000 2814 1321 2931 11751 9615 9615 1 0 0 2729100 EIINTYTEAVQTVDPFK HEWHKRVALHQGRPREIINTYTEAVQTVDP INTYTEAVQTVDPFKATGKPHTLWVAFAKF R E I F K A 1 0 1 1 0 1 2 0 0 2 0 1 0 1 1 0 3 0 1 2 0 0 17 0 1966.9888 Q9HCS7 Q9HCS7 373 389 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 7.6924E-06 132.59 By matching By MS/MS 2 0.816 1 1 1 2 1 15184000 0 5895400 9288400 2815 2014 2932 11752;11753;11754 9616 9616 1 0 2696200 1801500 EIIQDVTLHDLDVANAR EEYVPLPKGDVHKKKEIIQDVTLHDLDVAN IQDVTLHDLDVANARPQGGQDILSMMGQLM K E I A R P 2 1 1 3 0 1 1 0 1 2 2 0 0 0 0 0 1 0 0 2 0 0 17 0 1920.9905 Q9Y265 Q9Y265 233 249 RUVBL1 RuvB-like 1 yes yes 3 1.4732E-06 125.89 By MS/MS 4 0 1 1 13670000 0 0 13670000 2816 2234 2933 11755 9617 9617 1 0 0 2232700 EIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPK EEYVPLPKGDVHKKKEIIQDVTLHDLDVAN GQDILSMMGQLMKPKKTEITDKLRGEINKV K E I P K K 2 1 1 4 0 4 1 3 1 3 4 2 3 0 2 1 1 0 0 2 0 0 35 2 3860.9587 Q9Y265 Q9Y265 233 267 RUVBL1 RuvB-like 1 yes yes 4 0.010854 26.476 By MS/MS 4 0 1 1 13903000 0 0 13903000 2817 2234 2934 11756 9618 9618 1 0 0 2270800 EIISHISQHGGK LVELKVILHSSSGNKEIISHISQHGGKWPY GNKEIISHISQHGGKWPYWFKKMENIQKLG K E I G K W 0 0 0 0 0 1 1 2 2 3 0 1 0 0 0 2 0 0 0 0 0 0 12 0 1304.6837 A6NHR9 A6NHR9 760 771 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.012369 68.515 By MS/MS 1 0 1 1 6747200 0 0 6747200 2818 15 2935 11757 9619 9619 1 0 0 1453800 EIISNLAK PLLIDEDYYARVEGREIISNLAKAAGLATM YARVEGREIISNLAKAAGLATMISTMRPDI R E I A K A 1 0 1 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 8 0 886.51238 O75533 O75533 595 602 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.012528 90.661 By MS/MS 2 0 1 1 16781000 0 16781000 0 2819 270 2936 11758 9620 9620 1 0 7556600 0 EIKDILIQYDR LVAYYQKYVDEASKKEIKDILIQYDRTLLV ASKKEIKDILIQYDRTLLVADPRRCESKKF K E I D R T 0 1 0 2 0 1 1 0 0 3 1 1 0 0 0 0 0 0 1 0 0 0 11 1 1404.7613 P62249 P62249 107 117 RPS16 40S ribosomal protein S16 yes yes 2;3 1.7168E-06 160.36 By matching By MS/MS 8.2 0.4 4 1 2 3 166220000 0 9235400 156980000 2820 1010 2937 11759;11760;11761;11762;11763 9621;9622;9623 9623 3 0 4201800 24651000 EIKIEISELNR EELQVTVGRHGDSLKEIKIEISELNRVIQR DSLKEIKIEISELNRVIQRLQGEIAHVKKQ K E I N R V 0 1 1 0 0 0 3 0 0 3 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1342.7456 CON__P35908;CON__P35908v2;P35908 CON__P35908 397 407 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 2.5013E-18 190.02 By MS/MS By matching By MS/MS 4.81 2.86 3 1 2 2 2 1 1 2 1 1 12 1 3 155020000 120750000 919100 33349000 + 2821 65;66 2938 11764;11765;11766;11767;11768;11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779 9624;9625;9626;9627;9628;9629;9630;9631;9632;9633 9632 9 103560000 318160 6973100 EILALIPNQNALLK PELSQKTLKAPTLQKEILALIPNQNALLKD KEILALIPNQNALLKDLDILHNSSQMKSMS K E I L K D 2 0 2 0 0 1 1 0 0 2 4 1 0 0 1 0 0 0 0 0 0 0 14 0 1548.9239 Q7L2Z9 Q7L2Z9 227 240 CENPQ Centromere protein Q yes yes 2 0.0032157 95.642 By MS/MS By MS/MS 6 0 2 1 1 13524000 0 5320200 8204000 2822 1523 2939 11780;11781 9634;9635 9635 2 0 1841700 1227400 EILEQLLEAIVVATNPSGR NQGTVTEGSSPAYLKEILEQLLEAIVVATN QLLEAIVVATNPSGRLISELFQKLPSKVQY K E I G R L 2 1 1 0 0 1 3 1 0 2 3 0 0 0 1 1 1 0 0 2 0 0 19 0 2051.1263 Q86U86 Q86U86 184 202 PBRM1 Protein polybromo-1 yes yes 2;3 1.2761E-09 124.84 By MS/MS 1.67 0.471 1 2 3 2108400 0 0 2108400 2823 1545 2940 11782;11783;11784 9636;9637 9637 2 0 0 471920 EILGTAQSVGCNVDGR MRHRSLARELSGTIKEILGTAQSVGCNVDG ILGTAQSVGCNVDGRHPHDIIDDINSGAVE K E I G R H 1 1 1 1 1 1 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 16 0 1674.7995 P30050 P30050 131 146 RPL12 60S ribosomal protein L12 yes yes 2 3.2448E-08 164.81 By MS/MS By MS/MS By MS/MS 7.6 0.49 2 3 1 2 2 108970000 6306400 17360000 85308000 2824 708 2941 11785;11786;11787;11788;11789 9638;9639;9640;9641;9642 9641 5 5414200 9570500 14248000 EILLEMIHSIQNSQDMR VEALREAATAVEQEKEILLEMIHSIQNSQD LLEMIHSIQNSQDMRQISDGEREELNLTAN K E I M R Q 0 1 1 1 0 2 2 0 1 3 2 0 2 0 0 2 0 0 0 0 0 0 17 0 2056.0081 O95816 O95816 54 70 BAG2 BAG family molecular chaperone regulator 2 yes yes 2;3 0.00015854 94.454 By MS/MS 7 0 2 2 3613300 0 0 3613300 2825 342 2942 11790;11791 9643;9644 9644 2 0 0 641160 EILQDKDGLNQR IRPDINVDVALTMPREILQDKDGLNQRYFR MPREILQDKDGLNQRYFRKRALYLAHLAHH R E I Q R Y 0 1 1 2 0 2 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1427.7369 Q9H6R4 Q9H6R4 187 198 NOL6 Nucleolar protein 6 yes yes 3 0.0047485 84.289 By MS/MS 2 0 1 1 7253300 0 7253300 0 2826 1988 2943 11792 9645 9645 1 0 3266300 0 EILSEVER KDPKACTILLRGASKEILSEVERNLQDAMQ LLRGASKEILSEVERNLQDAMQVCRNVLLD K E I E R N 0 1 0 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 973.50803 P49368 P49368 382 389 CCT3 T-complex protein 1 subunit gamma yes yes 2 0.015595 87.754 By matching By MS/MS 4.33 0.471 2 1 1 2 24872000 9820300 0 15052000 2827 854 2944 11793;11794;11795 9646 9646 1 7661500 0 2294600 EILTAQALELSLK EQLLDKRKNAQGEEKEILTAQALELSLKYH EKEILTAQALELSLKYHFVTPLTSMVVTKP K E I L K Y 2 0 0 0 0 1 2 0 0 1 4 1 0 0 0 1 1 0 0 0 0 0 13 0 1427.8235 CON__Q0V8M9 CON__Q0V8M9 579 591 yes yes 2 0.051831 68.069 By MS/MS By MS/MS 10 0 2 1 1 2893800 1631300 1262500 0 + 2828 75 2945 11796;11797 9647;9648 9648 2 2972000 6387100 0 EILVGDVGQTVDDPYATFVK CLSEDKKNIILEEGKEILVGDVGQTVDDPY DVGQTVDDPYATFVKMLPDKDCRYALYDAT K E I V K M 1 0 0 3 0 1 1 2 0 1 1 1 0 1 1 0 2 0 1 4 0 0 20 0 2165.0892 P23528 P23528 54 73 CFL1 Cofilin-1 yes yes 2;3 1.6279E-21 177.38 By matching By MS/MS 7.62 0.696 4 3 1 3 5 93551000 0 2798900 90752000 2829 645 2946 11798;11799;11800;11801;11802;11803;11804;11805 9649;9650;9651;9652 9649 4 0 1490000 15603000 EINITSALAEK IMHNLIFQMYDEGEREINITSALAEKIKVN EGEREINITSALAEKIKVNWTPEINKEHLL R E I E K I 2 0 1 0 0 0 2 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 11 0 1187.6398 A6NHR9 A6NHR9 1080 1090 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0041674 103.42 By MS/MS 1.5 0.5 1 1 2 8725200 0 8725200 0 2830 15 2947 11806;11807 9653 9653 1 0 4222000 0 EINNPMFR VVREGPMFEAMIMNREINNPMFRFLFENQT EAMIMNREINNPMFRFLFENQTPAHVYYRW R E I F R F 0 1 2 0 0 0 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 8 0 1019.4859 O15042 O15042 453 460 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.0025038 108.24 By MS/MS By MS/MS 2 0 2 1 1 12629000 0 4998000 7630800 2831 163 2948 11808;11809 9654;9655 9654 2 0 2250600 1724400 EIPAWVPFDPAAQITK WKYYYDGKDYIEFNKEIPAWVPFDPAAQIT IPAWVPFDPAAQITKQKWEAEPVYVQRAKA K E I T K Q 3 0 0 1 0 1 1 0 0 2 0 1 0 1 3 0 1 1 0 1 0 0 16 0 1781.9352 P25311 P25311 150 165 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2;3 2.7507E-07 163.71 By MS/MS By matching By MS/MS 5.32 2.7 2 2 3 2 2 4 1 2 3 1 17 1 4 328660000 310890000 426630 17345000 2832 656 2949 11810;11811;11812;11813;11814;11815;11816;11817;11818;11819;11820;11821;11822;11823;11824;11825;11826;11827;11828;11829;11830;11831 9656;9657;9658;9659;9660;9661;9662;9663;9664;9665;9666;9667;9668;9669;9670 9664 15 287360000 2158400 2972900 EIPSATQSPISK TLGVQRPKLEKKDAKEIPSATQSPISKKRK DAKEIPSATQSPISKKRKKKGFLPETKKRK K E I S K K 1 0 0 0 0 1 1 0 0 2 0 1 0 0 2 3 1 0 0 0 0 0 12 0 1256.6612 Q9BQG0 Q9BQG0 1156 1167 MYBBP1A Myb-binding protein 1A yes yes 2 0.019077 85.355 By MS/MS 1 0 1 1 8094700 0 8094700 0 2833 1885 2950 11832 9671 9671 1 0 3956600 0 EIPYTFEDR FYRKGVKAVDPKTGREIPYTFEDRINFAVF DPKTGREIPYTFEDRINFAVFPSLQGGPHN R E I D R I 0 1 0 1 0 0 2 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 9 0 1168.5401 P34897 P34897 306 314 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.052257 70.856 By MS/MS 4 0 1 1 15739000 0 0 15739000 2834 734 2951 11833 9672 9672 1 0 0 2570700 EIQAPASADIR DVLEQRGRLQKLVAKEIQAPASADIRVLRG LVAKEIQAPASADIRVLRGHQLSITCLVVT K E I I R V 3 1 0 1 0 1 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1169.6041 O43818 O43818 130 140 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 6.0616E-05 143.03 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 32821000 0 0 32821000 2835 214 2952 11834;11835;11836 9673;9674 9674 2 0 0 5106900 EIQEPDPTYEEK EMEEIFDDASPGKQKEIQEPDPTYEEKMQT KQKEIQEPDPTYEEKMQTDRANRFEYLLKQ K E I E K M 0 0 0 1 0 1 4 0 0 1 0 1 0 0 2 0 1 0 1 0 0 0 12 0 1476.662 O60264 O60264 72 83 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.00083018 120.06 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 27433000 0 6644500 20789000 2836 223 2953 11837;11838;11839 9675;9676 9676 2 0 2992100 4605900 EIQLEISGK PLTLYYSHWRKLRDREIQLEISGKERLEDL RKLRDREIQLEISGKERLEDLNFPEIKRRK R E I G K E 0 0 0 0 0 1 2 1 0 2 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1015.555 Q9Y3T9 Q9Y3T9 629 637 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.0085699 90.657 By MS/MS 3 0 1 1 5777100 0 0 5777100 2837 2277 2954 11840 9677 9677 1 0 0 1120500 EIQMLAR KGVRHTMMFSATFPKEIQMLARDFLDEYIF MFSATFPKEIQMLARDFLDEYIFLAVGRVG K E I A R D 1 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 O00571;O15523 O00571 388 394 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.017096 107.74 By MS/MS By MS/MS 3.2 0.748 1 2 2 3 2 94734000 0 51751000 42983000 2838 131 2955 11841;11842;11843;11844;11845 9678;9679;9680 9679 3 0 21324000 8229400 EIQQELSSGR NIEQIFRSFVVSKFREIQQELSSGRNEGQL VSKFREIQQELSSGRNEGQLNGETNTPIEG R E I G R N 0 1 0 0 0 2 2 1 0 1 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1145.5677 P18583 P18583 19 28 SON Protein SON yes yes 2 0.0014824 108.98 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 9899700 952150 4508100 4439500 2839 596 2956 11846;11847;11848 9681 9681 1 952150 2203500 1003200 EIQTAVR SRLAHYNKRSTITSREIQTAVRLLLPGELA KRSTITSREIQTAVRLLLPGELAKHAVSEG R E I V R L 1 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 815.45012 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814 P06899 94 100 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K no no 2 0.0022842 132.72 By MS/MS By MS/MS By MS/MS 7.13 2 1 1 1 2 3 3 2 2 4 5 6 1013500000 89516000 325370000 598660000 2840 451;644;953 2957 11849;11850;11851;11852;11853;11854;11855;11856;11857;11858;11859;11860;11861;11862;11863 9682;9683;9684;9685;9686;9687;9688;9689;9690;9691;9692;9693;9694;9695;9696;9697;9698 9697 17 86874000 151120000 142110000 EIQTAVRLLLPGELAK SRLAHYNKRSTITSREIQTAVRLLLPGELA IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R E I A K H 2 1 0 0 0 1 2 1 0 1 4 1 0 0 1 0 1 0 0 1 0 0 16 1 1750.0353 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814 P06899 94 109 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K no no 2;3 1.1674E-58 231.69 By MS/MS By MS/MS 8 0 4 2 2 46120000 0 9103600 37017000 2841 451;644;953 2958 11864;11865;11866;11867 9699;9700;9701;9702 9701 4 0 4141800 5675000 EIQTAVRLLLPGELAKHAVSEGTK SRLAHYNKRSTITSREIQTAVRLLLPGELA LPGELAKHAVSEGTKAVTKYTSAK______ R E I T K A 3 1 0 0 0 1 3 2 1 1 4 2 0 0 1 1 2 0 0 2 0 0 24 2 2559.4384 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814 P06899 94 117 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K no no 3 5.7654E-21 143.47 By MS/MS 8 0 1 1 14685000 0 0 14685000 2842 451;644;953 2959 11868 9703 9703 1 0 0 2251400 EIREDLPVNTSK GEDNSTAQDTEELEKEIREDLPVNTSKTRP LEKEIREDLPVNTSKTRPKQEKAFSLKTIS K E I S K T 0 1 1 1 0 0 2 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1399.7307 Q86UE4 Q86UE4 468 479 MTDH Protein LYRIC yes yes 3 0.029206 59.227 By matching By MS/MS 2.5 0.5 1 1 1 1 11578000 0 1495000 10082000 2843 1546 2960 11869;11870 9704 9704 1 0 673240 1955500 EISFAYEVLSNPEKR EYHPDKNPNAGDKFKEISFAYEVLSNPEKR EISFAYEVLSNPEKRELYDRYGEQGLREGS K E I K R E 1 1 1 0 0 0 3 0 0 1 1 1 0 1 1 2 0 0 1 1 0 0 15 1 1780.8996 O60884 O60884 49 63 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 2;3 4.1176E-17 187.85 By MS/MS 5 0 2 2 16002000 0 0 16002000 2844 238 2961 11871;11872 9705;9706 9706 2 0 0 2231900 EISHVLNFLIR RRGVLANALAGRDEKEISHVLNFLIRNLSQ RDEKEISHVLNFLIRNLSQPRFAPVLINAA K E I I R N 0 1 1 0 0 0 1 0 1 2 2 0 0 1 0 1 0 0 0 1 0 0 11 0 1339.7612 Q8TED0 Q8TED0 417 427 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2;3 0.00021266 112.71 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 22416000 0 3113500 19302000 2845 1665 2962 11873;11874;11875;11876 9707;9708;9709 9709 3 0 1033300 3204700 EISLSAVR MEMPLINQHKQAKLKEISLSAVRFMEELGE HKQAKLKEISLSAVRFMEELGEDRFGKVYK K E I V R F 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 8 0 873.49198 Q01974 Q01974 467 474 ROR2 Tyrosine-protein kinase transmembrane receptor ROR2 yes yes 2 0.0017394 111.65 By MS/MS By matching By MS/MS 5.36 3.31 2 1 1 1 1 1 1 1 2 8 2 1 125380000 112490000 2566700 10315000 2846 1143 2963 11877;11878;11879;11880;11881;11882;11883;11884;11885;11886;11887 9710;9711;9712;9713;9714;9715;9716;9717 9715 8 110070000 8726400 2222600 EISNSDGTRPVGMLGK KSDVNKEYYTQNMEREISNSDGTRPVGMLG ISNSDGTRPVGMLGKATSTSDMLLKLARTT R E I G K A 0 1 1 1 0 0 1 3 0 1 1 1 1 0 1 2 1 0 0 1 0 0 16 1 1659.825 Q9NW64 Q9NW64 124 139 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 3 0.051559 39.143 By MS/MS 5 0 1 1 16991000 0 16991000 0 2847 2076 2964 11888 9718 9718 1 0 4379900 0 EISQETAVNPVDIVSTLQALQMLK LRYLHNFQGKEISIKEISQETAVNPVDIVS PVDIVSTLQALQMLKYWKGKHLVLKRQDLI K E I L K Y 2 0 1 1 0 3 2 0 0 2 3 1 1 0 1 2 2 0 0 3 0 0 24 0 2626.3888 O95251 O95251 543 566 KAT7 Histone acetyltransferase KAT7 yes yes 2;3 1.7027E-07 79.69 By MS/MS 2.67 0.943 1 1 3 1 6 19173000 0 0 19173000 2848 316 2965;2966 11889;11890;11891;11892;11893;11894 9719;9720;9721;9722 9720 117 4 0 0 3794000 EITALAPSTMK GGTTMYPGIADRMQKEITALAPSTMKIKII RMQKEITALAPSTMKIKIIAPPERKYSVWI K E I M K I 2 0 0 0 0 0 1 0 0 1 1 1 1 0 1 1 2 0 0 0 0 0 11 0 1160.6111 P60709;P63261;P68032;P63267;P68133;P62736 P60709 316 326 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle no no 2 6.4055E-05 142.56 By MS/MS By MS/MS By MS/MS 5.85 2.79 2 3 5 4 5 6 3 1 5 6 8 17 15 5617700000 168530000 3186600000 2262600000 2849 966;1069;1075 2967;2968 11895;11896;11897;11898;11899;11900;11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911;11912;11913;11914;11915;11916;11917;11918;11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930;11931;11932;11933;11934 9723;9724;9725;9726;9727;9728;9729;9730;9731;9732;9733;9734;9735;9736;9737;9738;9739;9740;9741;9742;9743;9744;9745;9746;9747;9748;9749;9750;9751;9752;9753;9754;9755;9756;9757;9758;9759;9760;9761;9762;9763 9728 464 41 161060000 1182600000 705500000 EITALAPSTMKIK GGTTMYPGIADRMQKEITALAPSTMKIKII QKEITALAPSTMKIKIIAPPERKYSVWIGG K E I I K I 2 0 0 0 0 0 1 0 0 2 1 2 1 0 1 1 2 0 0 0 0 0 13 1 1401.7901 P60709;P63261;P68032;P63267;P68133;P62736 P60709 316 328 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle no no 2;3 0.007611 114.89 By MS/MS 5 0 2 2 17081000 0 17081000 0 2850 966;1069;1075 2969 11935;11936 9764;9765 9765 2 0 4402800 0 EITGIGPSTTTETETIAK VRIKIQHMELQLIKKEITGIGPSTTTETET GIGPSTTTETETIAKYEIMDGAPVKGESIP K E I A K Y 1 0 0 0 0 0 3 2 0 3 0 1 0 0 1 1 6 0 0 0 0 0 18 0 1847.9364 O75436 O75436 215 232 VPS26A Vacuolar protein sorting-associated protein 26A yes yes 2 0.00012445 99.011 By MS/MS 5.5 0.5 1 1 2 7615700 0 0 7615700 2851 259 2970 11937;11938 9766 9766 1 0 0 1098600 EITKPLRPLGK PILQEGGVPMGELFREITKPLRPLGKAASL ELFREITKPLRPLGKAASLLLEILGLLCKS R E I G K A 0 1 0 0 0 0 1 1 0 1 2 2 0 0 2 0 1 0 0 0 0 0 11 2 1250.7711 Q04637 Q04637 1361 1371 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 3 0.053058 55.649 By MS/MS 1.5 0.5 1 1 2 9607400 0 9607400 0 2852 1159 2971 11939;11940 9767 9767 1 0 4636800 0 EIVGASTNWR KQGIFHIHEVRDKLREIVGASTNWRDHVKA RDKLREIVGASTNWRDHVKAMEERKLLHSF R E I W R D 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 10 0 1131.5673 Q9Y305 Q9Y305 46 55 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.00037974 125.5 By MS/MS 5 0 1 1 76862000 0 0 76862000 2853 2256 2972 11941 9768 9768 1 0 0 10721000 EIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG R E I A K F 2 0 1 0 1 3 1 3 1 2 1 1 0 0 0 0 0 0 0 1 0 0 17 0 1821.9156 P68371;P04350 P68371 3 19 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 2;3 5.5353E-152 286.19 By MS/MS By MS/MS By MS/MS 5.47 2 2 4 4 1 2 2 1 2 12 625210000 13266000 112590000 499350000 2854 1079;414 2973 11942;11943;11944;11945;11946;11947;11948;11949;11950;11951;11952;11953;11954;11955;11956 9769;9770;9771;9772;9773;9774;9775;9776;9777;9778;9779;9780;9781;9782 9776 14 10350000 32567000 76303000 EIVNNIR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP KIPNFDVREIVNNIRRLMDGEEPLPMLPSY R E I I R R 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 856.47667 P11388 P11388 871 877 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.017913 106.29 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 45268000 7875200 12223000 25169000 2855 524 2974 11957;11958;11959;11960;11961 9783;9784;9785 9784 3 7875200 5789900 5469400 EKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSR ATNLPQLKELYQLSKEKADFTVVAGDEGSS SSEENKGPSGSAVSRKAPSKPSASTKKAEG K E K S R K 3 1 1 2 0 0 4 6 0 0 0 2 0 1 1 7 3 0 0 3 0 0 34 2 3299.5026 P49916 P49916 834 867 LIG3 DNA ligase 3 yes yes 4 2.4235E-59 141.69 By MS/MS 2 0 1 1 9810600 0 0 9810600 2856 874 2975 11962 9786 9786 1 0 0 2217000 EKAEALEDLVGFK LGNLPGSKRQPQTPKEKAEALEDLVGFKEL PKEKAEALEDLVGFKELFQTPGHTEESMTD K E K F K E 2 0 0 1 0 0 3 1 0 0 2 2 0 1 0 0 0 0 0 1 0 0 13 1 1447.7559 P46013 P46013 2429 2441 MKI67 Antigen KI-67 yes yes 2 0.0069072 116.03 By MS/MS 1.5 0.5 1 1 2 11315000 0 0 11315000 2857 821 2976 11963;11964 9787;9788 9788 2 0 0 2483300 EKANGTTVHVGIHPSK VYRKKYVIYIERVQREKANGTTVHVGIHPS KANGTTVHVGIHPSKVVITRLKLDKDRKKI R E K S K V 1 0 1 0 0 0 1 2 2 1 0 2 0 0 1 1 2 0 0 2 0 0 16 1 1673.8849 P61254;Q9UNX3 P61254 88 103 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 4 0.0060984 59.261 By MS/MS 7 0 1 1 3545000 0 3545000 0 2858 989 2977 11965 9789 9789 1 0 2035600 0 EKDLEDLFYK GDGRIYVGNLPTDVREKDLEDLFYKYGRIR PTDVREKDLEDLFYKYGRIREIELKNRHGL R E K Y K Y 0 0 0 2 0 0 2 0 0 0 2 2 0 1 0 0 0 0 1 0 0 0 10 1 1298.6394 Q13242 Q13242 27 36 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 3 0.019925 65.627 By matching By MS/MS 7 0 2 1 1 16766000 0 1002900 15763000 2859 1232 2978 11966;11967 9790 9790 1 0 575860 2797000 EKDQLSQSIVMYK YNDVKKQQQMAALTKEKDQLSQSIVMYKSL TKEKDQLSQSIVMYKSLFEASQQLLNEMKC K E K Y K S 0 0 0 1 0 2 1 0 0 1 1 2 1 0 0 2 0 0 1 1 0 0 13 1 1567.7916 A6NHR9 A6NHR9 1629 1641 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 1.0297E-10 181.66 By MS/MS 1 0 1 1 11861000 0 0 11861000 2860 15 2979 11968 9791 9791 1 0 0 2555700 EKEELMER KKREMAEKEKEKIEREKEELMERLKQIEEQ EKEKIEREKEELMERLKQIEEQTKKAQQEL R E K E R L 0 1 0 0 0 0 4 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 8 1 1062.5016 P26038;P35241 P26038 343 350 MSN;RDX Moesin;Radixin no no 2 0.02996 103.56 By MS/MS 3 0 1 1 3512000 0 3512000 0 2861 664;742 2980 11969 9792 9792 1 0 1497200 0 EKEPEYTLLTER INPISRLAQIQQAKKEKEPEYTLLTERGLP AKKEKEPEYTLLTERGLPRRREFVMQVKVG K E K E R G 0 1 0 0 0 0 4 0 0 0 2 1 0 0 1 0 2 0 1 0 0 0 12 1 1506.7566 O95793 O95793 300 311 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 0.028336 93.258 By MS/MS 4 0 1 1 22755000 0 0 22755000 2862 341 2981 11970 9793 9793 0 0 0 3716700 EKEPIVGSTDYGKDEDSAEALLK QQYFADANEAESWMREKEPIVGSTDYGKDE TDYGKDEDSAEALLKKHEALMSDLSAYGSS R E K L K K 2 0 0 3 0 0 4 2 0 1 2 3 0 0 1 2 1 0 1 1 0 0 23 2 2493.2122 Q13813 Q13813 908 930 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3;4 1.5826E-14 113.67 By MS/MS 1 0 2 2 37601000 0 0 37601000 2863 1268 2982 11971;11972 9794;9795 9794 2 0 0 8101800 EKEQLMASDDFGR QRFNRDVDETISWIKEKEQLMASDDFGRDL IKEKEQLMASDDFGRDLASVQALLRKHEGL K E K G R D 1 1 0 2 0 1 2 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 13 1 1524.6879 Q13813 Q13813 273 285 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0083972 113.63 By MS/MS 1 0 1 1 13397000 0 0 13397000 2864 1268 2983 11973 9796 9796 1 0 0 2886700 EKESELGDRPLQVGER GGGVGHRTVYLFDRREKESELGDRPLQVGE KESELGDRPLQVGERSDYAGFRACVCQTLG R E K E R S 0 2 0 1 0 1 4 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 16 2 1840.9279 A6NHR9 A6NHR9 35 50 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3;4 1.9529E-05 142.74 By MS/MS By MS/MS 1 0 3 1 2 39316000 0 3898800 35418000 2865 15 2984 11974;11975;11976 9797;9798;9799 9798 3 0 1905700 7631300 EKINELLK KEESISLMKETEGKREKINELLKYIEERLH KETEGKREKINELLKYIEERLHTLEEEKEE R E K L K Y 0 0 1 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 8 1 985.5808 Q9UQE7 Q9UQE7 187 194 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0025589 112.41 By MS/MS 2 0 1 1 0 0 0 0 2866 2222 2985 11977 9800 9800 1 0 0 0 EKLEAEMEAAR KQQREQVDRNIREAKEKLEAEMEAARHEHQ REAKEKLEAEMEAARHEHQLMLMRQDLMRR K E K A R H 3 1 0 0 0 0 4 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1275.6129 Q8WXF1 Q8WXF1 302 312 PSPC1 Paraspeckle component 1 yes yes 3 0.033009 58.476 By MS/MS 3.5 1.12 1 1 1 1 4 23108000 0 0 23108000 2867 1695 2986 11978;11979;11980;11981 9801 9801 1 0 0 4095700 EKLEATINELV FKKGQKVGEFSGANKEKLEATINELV____ GANKEKLEATINELV_______________ K E K L V - 1 0 1 0 0 0 3 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 11 1 1257.6816 P10599 P10599 95 105 TXN Thioredoxin yes yes 2 8.7926E-05 151.44 By MS/MS By matching By MS/MS 6.88 2.71 1 1 1 1 1 2 1 6 1 1 63257000 38802000 6586900 17869000 2868 512 2987 11982;11983;11984;11985;11986;11987;11988;11989 9802;9803;9804;9805;9806 9803 5 35730000 33324000 5708100 EKLEAYQHLFYLLQTNPTYLAK NKQKGGLKALSKEKREKLEAYQHLFYLLQT HLFYLLQTNPTYLAKLIFQMPQNKSTKFMD R E K A K L 2 0 1 0 0 2 2 0 1 0 5 2 0 1 1 0 2 0 3 0 0 0 22 1 2682.4057 P46940 P46940 967 988 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3;4 2.1031E-07 87.326 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 12856000 0 3509600 9346500 2869 835 2988 11990;11991;11992 9807;9808 9807 2 0 1580400 2088800 EKLEMEMEAAR KQQQDQVDRNIKEAREKLEMEMEAARHEHQ KEAREKLEMEMEAARHEHQVMLMRQDLMRR R E K A R H 2 1 0 0 0 0 4 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 11 1 1335.6163 Q15233 Q15233 294 304 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 2.9586E-06 157.75 By matching By MS/MS 3.4 1.32 2 3 5 6 3 1 2 18 603880000 0 7711100 596170000 2870 1351 2989;2990 11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007;12008;12009;12010;12011;12012 9809;9810;9811;9812;9813;9814;9815;9816;9817;9818;9819;9820;9821;9822;9823 9817 607 15 0 2786000 101240000 EKLQEEMLQR EVERDNLAEDIMRLREKLQEEMLQREEAEN IMRLREKLQEEMLQREEAENTLQSFRQDVD R E K Q R E 0 1 0 0 0 2 3 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 10 1 1302.6602 P08670 P08670 187 196 VIM Vimentin yes yes 2;3 6.0219E-16 182.98 By MS/MS By MS/MS 4.54 1.08 2 5 4 1 1 3 10 857800000 0 61053000 796750000 2871 476 2991;2992 12013;12014;12015;12016;12017;12018;12019;12020;12021;12022;12023;12024;12025 9824;9825;9826;9827;9828;9829;9830;9831;9832;9833;9834 9831 185 11 0 19439000 124400000 EKLQEEMLQREEAENTLQSFR EVERDNLAEDIMRLREKLQEEMLQREEAEN MLQREEAENTLQSFRQDVDNASLARLDLER R E K F R Q 1 2 1 0 0 3 6 0 0 0 3 1 1 1 0 1 1 0 0 0 0 0 21 2 2607.2599 P08670 P08670 187 207 VIM Vimentin yes yes 3 4.1727E-86 241.52 By MS/MS 4.5 0.5 1 1 2 13682000 0 0 13682000 2872 476 2993 12026;12027 9835;9836 9836 2 0 0 2021800 EKNPDMVAGEK YTYEELLNRVFNIMREKNPDMVAGEKRKFV NIMREKNPDMVAGEKRKFVMKPPQVVRVGT R E K E K R 1 0 1 1 0 0 2 1 0 0 0 2 1 0 1 0 0 0 0 1 0 0 11 1 1216.5758 P20042 P20042 189 199 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 0.0049593 83.314 By MS/MS 5.5 0.5 1 1 2 9028400 0 9028400 0 2873 613 2994 12028;12029 9837 9837 1 0 2395500 0 EKPYFPIPEEYTFIQNVPLEDR VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ PEEYTFIQNVPLEDRVRGPKGPEEKKDCEV K E K D R V 0 1 1 1 0 1 4 0 0 2 1 1 0 2 4 0 1 0 2 1 0 0 22 1 2723.3483 Q00839 Q00839 463 484 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 1.0834E-27 181.51 By MS/MS By MS/MS 2.73 1.6 3 3 2 1 1 1 3 8 675110000 0 50708000 624410000 2874 1127 2995 12030;12031;12032;12033;12034;12035;12036;12037;12038;12039;12040 9838;9839;9840;9841;9842;9843;9844;9845;9846;9847;9848;9849 9845 12 0 22848000 138050000 EKPYFPIPEEYTFIQNVPLEDRVR VLCHNCAVEFNFGQKEKPYFPIPEEYTFIQ EYTFIQNVPLEDRVRGPKGPEEKKDCEVVM K E K V R G 0 2 1 1 0 1 4 0 0 2 1 1 0 2 4 0 1 0 2 2 0 0 24 2 2978.5178 Q00839 Q00839 463 486 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 4 1.0264E-07 84.942 By MS/MS 2 0 1 1 7474600 0 7474600 0 2875 1127 2996 12041 9850 9850 1 0 3365900 0 EKQAQLAQTLQQQEQASQGLR QQQDQELAGLKQQAKEKQAQLAQTLQQQEQ AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ K E K L R H 3 1 0 0 0 8 2 1 0 0 3 1 0 0 0 1 1 0 0 0 0 0 21 1 2382.2251 Q14980 Q14980 530 550 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 8.2445E-37 198.77 By MS/MS 1 0 1 1 6868700 0 6868700 0 2876 1327 2997 12042 9851 9851 1 0 3357300 0 EKQDEQVGLPGK DLATFIEELEAVEAKEKQDEQVGLPGKGGK EAKEKQDEQVGLPGKGGKAKGKKTQMAEVL K E K G K G 0 0 0 1 0 2 2 2 0 0 1 2 0 0 1 0 0 0 0 1 0 0 12 1 1326.6779 P11388 P11388 1185 1196 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.031697 105.2 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 15859000 0 2085700 13773000 2877 524 2998 12043;12044;12045 9852;9853 9853 2 0 1019500 2978700 EKQPPIDNIIR NQLQATQAARKLLSREKQPPIDNIIRAGLI LLSREKQPPIDNIIRAGLIPKFVSFLGRTD R E K I R A 0 1 1 1 0 1 1 0 0 3 0 1 0 0 2 0 0 0 0 0 0 0 11 1 1321.7354 P52292 P52292 107 117 KPNA2 Importin subunit alpha-1 yes yes 3 5.2242E-05 135.99 By MS/MS By MS/MS 4 0 2 1 1 42783000 0 27113000 15670000 2878 903 2999 12046;12047 9854;9855 9854 2 0 8997700 2559500 EKQPVAGSEGAQYR QNQALARQYMQMLPKEKQPVAGSEGAQYRK KEKQPVAGSEGAQYRKKQLAKQLPAHDQDP K E K Y R K 2 1 0 0 0 2 2 2 0 0 0 1 0 0 1 1 0 0 1 1 0 0 14 1 1518.7427 Q9UGI8 Q9UGI8 133 146 TES Testin yes yes 3 2.6385E-05 88.075 By MS/MS 5 0 1 1 0 0 0 0 2879 2143 3000 12048 9856 9856 1 0 0 0 EKRDDGYEAAASSK RERSQAEPSERRVKREKRDDGYEAAASSKT REKRDDGYEAAASSKTSSGDASSLSIEETN R E K S K T 3 1 0 2 0 0 2 1 0 0 0 2 0 0 0 2 0 0 1 0 0 0 14 2 1525.7009 O43290 O43290 96 109 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3 0.048147 50.806 By MS/MS By matching 2.5 0.5 1 1 1 1 1771900 0 1567500 204410 2880 193 3001 12049;12050 9857 9857 1 0 705860 39646 EKVESELR TDTSDKKLQLIKDYREKVESELRSICTTVL QLIKDYREKVESELRSICTTVLELLDKYLI R E K L R S 0 1 0 0 0 0 3 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 8 1 988.51892 P27348 P27348 84 91 YWHAQ 14-3-3 protein theta yes yes 2 0.029348 103.83 By MS/MS 6.5 0.5 1 1 2 5844000 0 0 5844000 2881 676 3002 12051;12052 9858 9858 1 0 0 1011900 EKVLATVTKPVGGDK RKYSAAKSKVEKKKKEKVLATVTKPVGGDK EKVLATVTKPVGGDKNGGTRVVKLRKMPRY K E K D K N 1 0 0 1 0 0 1 2 0 0 1 3 0 0 1 0 2 0 0 3 0 0 15 2 1540.8825 Q02878 Q02878 86 100 RPL6 60S ribosomal protein L6 yes yes 3 0.0001982 103.39 By MS/MS By matching 5.67 0.471 1 2 2 1 19262000 0 16762000 2499600 2882 1149 3003 12053;12054;12055 9859 9859 1 0 5579000 373970 EKVPGGLQGSQDR EGSRDRGLVRPGSSREKVPGGLQGSQDRGA SREKVPGGLQGSQDRGAAGSRERGPPRRAG R E K D R G 0 1 0 1 0 2 1 3 0 0 1 1 0 0 1 1 0 0 0 1 0 0 13 1 1369.695 P49750 P49750 1091 1103 YLPM1 YLP motif-containing protein 1 yes yes 2;3 0.031131 91.549 By MS/MS By MS/MS 1 0 2 1 1 1386300 0 0 1386300 2883 865 3004 12056;12057 9860;9861 9860 2 0 0 298700 EKYEITEQR RKPRHQEGEIFDTEKEKYEITEQRKIDQKA IFDTEKEKYEITEQRKIDQKAVDSQILPKI K E K Q R K 0 1 0 0 0 1 3 0 0 1 0 1 0 0 0 0 1 0 1 0 0 0 9 1 1194.5881 Q02878 Q02878 238 246 RPL6 60S ribosomal protein L6 yes yes 2 2.8389E-10 169.12 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 64452000 0 10852000 53600000 2884 1149 3005 12058;12059;12060;12061;12062 9862;9863;9864;9865;9866 9864 5 0 3449700 8028400 EKYVQELAAVR NLGRQFLEVELDQAREKYVQELAAVRADAE DQAREKYVQELAAVRADAETRLAEVQREAQ R E K V R A 2 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 11 1 1304.7089 Q14980 Q14980 1474 1484 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0016481 136.57 By MS/MS 1 0 1 1 70356000 0 0 70356000 2885 1327 3006 12063 9867 9867 1 0 0 15159000 ELAAEMAAAFLNENLPESIFGAPK QMAEEMVEAAGEDERELAAEMAAAFLNENL FLNENLPESIFGAPKAGNGQWASVIRVMNP R E L P K A 6 0 2 0 0 0 4 1 0 1 3 1 1 2 2 1 0 0 0 0 0 0 24 0 2532.257 Q15393 Q15393 833 856 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 1.0967E-20 133.48 By MS/MS 1.5 0.5 2 2 4 26527000 0 0 26527000 2886 1361 3007 12064;12065;12066;12067 9868;9869;9870 9870 3 0 0 5943900 ELAAQLNEEAK RNEMTAEEKRRAHQKELAAQLNEEAKRRLT AHQKELAAQLNEEAKRRLTEQKGEQQIQKA K E L A K R 3 0 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1214.6143 Q9Y5B9 Q9Y5B9 480 490 SUPT16H FACT complex subunit SPT16 yes yes 2 2.0823E-07 160.59 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 193170000 0 45021000 148150000 2887 2296 3008 12068;12069;12070;12071;12072;12073;12074 9871;9872;9873;9874;9875 9872 5 0 20693000 32254000 ELAAQLNEEAKR RNEMTAEEKRRAHQKELAAQLNEEAKRRLT HQKELAAQLNEEAKRRLTEQKGEQQIQKAR K E L K R R 3 1 1 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1370.7154 Q9Y5B9 Q9Y5B9 480 491 SUPT16H FACT complex subunit SPT16 yes yes 2;3 1.9336E-45 223.31 By MS/MS By MS/MS 1.86 0.639 2 4 1 3 4 110670000 0 39551000 71114000 2888 2296 3009 12075;12076;12077;12078;12079;12080;12081 9876;9877;9878;9879 9878 4 0 17948000 15648000 ELAEATGLTTTQVSNWFK EWYAHNPYPSPREKRELAEATGLTTTQVSN EATGLTTTQVSNWFKNRRQRDRAAEAKERE R E L F K N 2 0 1 0 0 1 2 1 0 0 2 1 0 1 0 1 4 1 0 1 0 0 18 0 1994.9949 Q15475;Q9NPC8 Q15475 156 173 SIX1;SIX2 Homeobox protein SIX1;Homeobox protein SIX2 yes no 2 6.7234E-06 108.59 By MS/MS 6.5 0.5 1 1 2 10718000 0 0 10718000 2889 1370 3010 12082;12083 9880 9880 1 0 0 1660300 ELAEDGYSGVEVR ADGIFKAELNEFLTRELAEDGYSGVEVRVT TRELAEDGYSGVEVRVTPTRTEIIILATRT R E L V R V 1 1 0 1 0 0 3 2 0 0 1 0 0 0 0 1 0 0 1 2 0 0 13 0 1422.6627 P23396 P23396 28 40 RPS3 40S ribosomal protein S3 yes yes 2 1.8472E-24 196.27 By MS/MS By MS/MS 6.18 1.95 1 1 4 3 1 1 3 8 295030000 0 45787000 249240000 2890 641 3011 12084;12085;12086;12087;12088;12089;12090;12091;12092;12093;12094 9881;9882;9883;9884;9885;9886;9887;9888;9889;9890;9891 9888 10 0 16596000 41022000 ELAELVK MHNKAAPPQIPDTRRELAELVKRKQELAET PQIPDTRRELAELVKRKQELAETLANLERQ R E L V K R 1 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 800.46437 Q9HAF1 Q9HAF1 18 24 MEAF6 Chromatin modification-related protein MEAF6 yes yes 2 0.020487 101.69 By matching By MS/MS 7 0 2 1 1 11981000 0 2186800 9794300 2891 2001 3012 12095;12096 9892 9892 1 0 1255700 1737900 ELAEQTLNNIK FLPNAPKALIVEPSRELAEQTLNNIKQFKK EPSRELAEQTLNNIKQFKKYIDNPKLRELL R E L I K Q 1 0 2 0 0 1 2 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 11 0 1271.6721 Q92499 Q92499 297 307 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 1.7237E-59 234.82 By MS/MS By MS/MS 4.33 2.29 1 2 1 1 1 3 3 90670000 0 24591000 66079000 2892 1705 3013 12097;12098;12099;12100;12101;12102 9893;9894;9895;9896 9896 4 0 11223000 12664000 ELAETEPK KERQKLLEKIEEKQKELAETEPKFNSVKEK KIEEKQKELAETEPKFNSVKEKEERGIARL K E L P K F 1 0 0 0 0 0 3 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 8 0 915.45493 Q9UQE7 Q9UQE7 343 350 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.018852 85.212 By MS/MS 1.5 0.5 1 1 2 3259100 0 3259100 0 2893 2222 3014 12103;12104 9897 9897 1 0 1478700 0 ELAFQISK PVTGQVSVLVMCHTRELAFQISKEYERFSK LVMCHTRELAFQISKEYERFSKYMPNVKVA R E L S K E 1 0 0 0 0 1 1 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 8 0 934.51238 Q13838;O00148 Q13838 124 131 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2 0.0016054 113.5 By MS/MS By MS/MS By MS/MS 4.83 0.687 2 3 1 2 1 3 108170000 11892000 12481000 83798000 2894 1271 3015 12105;12106;12107;12108;12109;12110 9898;9899;9900;9901 9898 4 9474800 3217200 12250000 ELALQSFDTVQK QRSDGPYALVLVPTRELALQSFDTVQKLLK PTRELALQSFDTVQKLLKPFTWIVPGVLMG R E L Q K L 1 0 0 1 0 2 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1377.714 Q9H8H2 Q9H8H2 316 327 DDX31 Probable ATP-dependent RNA helicase DDX31 yes yes 2 0.0016359 111.06 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 16384000 0 7184000 9200400 2895 1996 3016 12111;12112;12113 9902;9903;9904 9904 3 0 3137800 1784400 ELALSALLK NRLGELLGHPSFQVKELALSALLKFVQLEG PSFQVKELALSALLKFVQLEGAHPLEKSKW K E L L K F 2 0 0 0 0 0 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 956.59063 Q9BVI4 Q9BVI4 116 124 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.049361 71.692 By MS/MS 4 0 1 1 8888900 0 8888900 0 2896 1914 3017 12114 9905 9905 1 0 2949900 0 ELAMPGEDLK LTWDMACRIILPPEKELAMPGEDLKFNLIL LPPEKELAMPGEDLKFNLILRQPMILEKGQ K E L L K F 1 0 0 1 0 0 2 1 0 0 2 1 1 0 1 0 0 0 0 0 0 0 10 0 1101.5376 P49411 P49411 396 405 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.036401 76.345 By MS/MS 5 0 1 1 10816000 0 0 10816000 2897 856 3018 12115 9906 9906 1 0 0 1508600 ELAMQTFGVLK MPRNGTGVLILSPTRELAMQTFGVLKELMT SPTRELAMQTFGVLKELMTHHVHTYGLIMG R E L L K E 1 0 0 0 0 1 1 1 0 0 2 1 1 1 0 0 1 0 0 1 0 0 11 0 1235.6584 Q9NVP1 Q9NVP1 262 272 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 2.0873E-09 164.57 By MS/MS By MS/MS By MS/MS 3.91 1.88 2 4 2 2 1 1 6 4 156050000 3452000 74206000 78390000 2898 2069 3019;3020 12116;12117;12118;12119;12120;12121;12122;12123;12124;12125;12126 9907;9908;9909;9910;9911;9912;9913;9914;9915;9916 9909 698 10 3982900 30579000 14923000 ELAPYDENWFYTR KVPEWVDTVKLAKHKELAPYDENWFYTRAA HKELAPYDENWFYTRAASTARHLYLRGGAG K E L T R A 1 1 1 1 0 0 2 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 13 0 1702.7627 P39019 P39019 44 56 RPS19 40S ribosomal protein S19 yes yes 2 9.4497E-25 201.33 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 88410000 0 17458000 70953000 2899 777 3021 12127;12128;12129;12130 9917;9918;9919 9919 3 0 8044600 11000000 ELAQQIEEETIK ESDQGPYAIILAPTRELAQQIEEETIKFGK PTRELAQQIEEETIKFGKPLGIRTVAVIGG R E L I K F 1 0 0 0 0 2 4 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1429.73 Q9BUQ8 Q9BUQ8 479 490 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.0010117 118.03 By MS/MS 1.5 0.5 1 1 2 40426000 0 0 40426000 2900 1909 3022 12131;12132 9920 9920 1 0 0 9085500 ELAQQIQK LDLKATQALVLAPTRELAQQIQKVVMALGD LVLAPTRELAQQIQKVVMALGDYMGASCHA R E L Q K V 1 0 0 0 0 3 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 956.5291 P60842;Q14240 P60842 111 118 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.059307 79.939 By MS/MS 4.5 0.5 1 1 2 3179600 0 0 3179600 2901 967;1294 3023 12133;12134 9921 9921 0 0 0 461700 ELAQQVQQVAAEYCR ERGDGPICLVLAPTRELAQQVQQVAAEYCR ELAQQVQQVAAEYCRACRLKSTCIYGGAPK R E L C R A 3 1 0 0 1 4 2 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 15 0 1791.8574 P17844 P17844 178 192 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 3.0587E-58 228.83 By MS/MS 3.5 0.5 1 1 2 15147000 0 0 15147000 2902 588 3024 12135;12136 9922 9922 1 0 0 2839800 ELAQQVQQVADDYGK ERGDGPICLVLAPTRELAQQVQQVADDYGK ELAQQVQQVADDYGKCSRLKSTCIYGGAPK R E L G K C 2 0 0 2 0 4 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 0 15 0 1690.8162 Q92841 Q92841 255 269 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 2.8367E-58 229.54 By MS/MS By MS/MS By MS/MS 3.27 1.66 2 1 4 2 1 1 1 4 6 298300000 18752000 68252000 211290000 2903 1725 3025 12137;12138;12139;12140;12141;12142;12143;12144;12145;12146;12147 9923;9924;9925;9926;9927;9928;9929;9930;9931;9932;9933;9934 9923 12 21636000 28989000 39732000 ELAQQVTPGDIVSTYGVR YREMHLAEQVTNNLKELAQQVTPGDIVSTY QQVTPGDIVSTYGVRKAMGISIPSPVMENN K E L V R K 1 1 0 1 0 2 1 2 0 1 1 0 0 0 1 1 2 0 1 3 0 0 18 0 1931.9953 Q9NPI1 Q9NPI1 595 612 BRD7 Bromodomain-containing protein 7 yes yes 2 0.0013814 83.204 By MS/MS 3 0 1 1 1945700 0 1945700 0 2904 2029 3026 12148 9935 9935 1 0 829470 0 ELASSEQNKNHINNELK KEINQTRDRLAKLNKELASSEQNKNHINNE ASSEQNKNHINNELKRKEEQLSSYEDKLFD K E L L K R 1 0 4 0 0 1 3 0 1 1 2 2 0 0 0 2 0 0 0 0 0 0 17 1 1966.9708 Q92878 Q92878 600 616 RAD50 DNA repair protein RAD50 yes yes 3 0.017544 49.049 By MS/MS 1 0 1 1 2394800 0 0 2394800 2905 1726 3027 12149 9936 9936 1 0 0 515990 ELAVQIQK IQVRETQALILAPTRELAVQIQKGLLALGD LILAPTRELAVQIQKGLLALGDYMNVQCHA R E L Q K G 1 0 0 0 0 2 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 927.53893 P38919 P38919 117 124 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.00095424 122.54 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 236190000 0 69971000 166220000 2906 775 3028 12150;12151;12152;12153 9937;9938 9938 2 0 18036000 23671000 ELDALDANDELTPLGR PPPLDAVIEAEHTLRELDALDANDELTPLG LDALDANDELTPLGRILAKLPIEPRFGKMM R E L G R I 2 1 1 3 0 0 2 1 0 0 4 0 0 0 1 0 1 0 0 0 0 0 16 0 1740.853 Q08211 Q08211 838 853 DHX9 ATP-dependent RNA helicase A yes yes 2 5.6132E-109 267.07 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 237960000 0 42710000 195250000 2907 1182 3029 12154;12155;12156;12157;12158 9939;9940;9941;9942;9943 9942 5 0 19495000 43374000 ELDDATEANEGLSR EEATRANASRRKLQRELDDATEANEGLSRE RELDDATEANEGLSREVSTLKNRLRRGGPI R E L S R E 2 1 1 2 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 14 0 1518.6798 P35580 P35580 1906 1919 MYH10 Myosin-10 yes yes 2 9.128E-25 199.68 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 79975000 0 39785000 40191000 2908 753 3030 12159;12160;12161 9944;9945;9946 9944 3 0 19356000 8659700 ELDMEPYTVAGVAK RECAIKFNDYFEFPRELDMEPYTVAGVAKL RELDMEPYTVAGVAKLEGDNVNPESQLIQQ R E L A K L 2 0 0 1 0 0 2 1 0 0 1 1 1 0 1 0 1 0 1 2 0 0 14 0 1521.7385 Q93008 Q93008 1821 1834 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 0.011617 78.683 By matching By MS/MS 1 0 2 1 1 54824000 12971000 0 41853000 2909 1737 3031 12162;12163 9947 9947 1 12971000 0 9017900 ELDSITPEVLPGWK QYHELVVQARDDFKRELDSITPEVLPGWKG RELDSITPEVLPGWKGMSVSDLADKLSTDD R E L W K G 0 0 0 1 0 0 2 1 0 1 2 1 0 0 2 1 1 1 0 1 0 0 14 0 1582.8243 Q16891 Q16891 372 385 IMMT MICOS complex subunit MIC60 yes yes 2 0.010956 79.659 By MS/MS 3 0 1 1 6801700 0 0 6801700 2910 1403 3032 12164 9948 9948 1 0 0 1319200 ELEAELEDER EQNEEKKRLLIKQVRELEAELEDERKQRAL IKQVRELEAELEDERKQRALAVASKKKMEI R E L E R K 1 1 0 1 0 0 5 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1231.5568 P35580 P35580 1600 1609 MYH10 Myosin-10 yes yes 2 5.1753E-11 169.44 By MS/MS By MS/MS 1 0 2 1 1 15872000 0 2658300 13213000 2911 753 3033 12165;12166 9949;9950 9950 2 0 1299300 2847000 ELEAENYHDIKR AAYEERVQAVVAVARELEAENYHDIKRITA VARELEAENYHDIKRITARKDNVIRLWEYL R E L K R I 1 1 1 1 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1515.7318 Q01082 Q01082 487 498 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 3.9376E-05 131.37 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 77992000 0 22485000 55507000 2912 1128 3034 12167;12168;12169;12170;12171 9951;9952;9953;9954 9951 4 0 10855000 11988000 ELEANVLATAPDK QRLIEQEEYLNVQVKELEANVLATAPDKKK VKELEANVLATAPDKKKQKLLEENVSAFKT K E L D K K 3 0 1 1 0 0 2 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 13 0 1369.7089 Q9NTJ3 Q9NTJ3 841 853 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.00024913 146.71 By MS/MS 1 0 1 1 9097800 0 0 9097800 2913 2054 3035 12172 9955 9955 1 0 0 1960300 ELEAQEAR TNALLVVKHRDMNEKELEAQEARKAQLENH HRDMNEKELEAQEARKAQLENHEPEEEEEE K E L A R K 2 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 8 0 944.45632 Q8N7H5 Q8N7H5 360 367 PAF1 RNA polymerase II-associated factor 1 homolog yes yes 2 0.033452 77.058 By MS/MS 3 0 1 1 2528900 0 0 2528900 2914 1614 3036 12173 9956 9956 1 0 0 490480 ELEDATETADAMNR EEAQRANASRRKLQRELEDATETADAMNRE RELEDATETADAMNREVSSLKNKLRRGDLP R E L N R E 3 1 1 2 0 0 3 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 14 0 1564.6675 P35579 P35579 1899 1912 MYH9 Myosin-9 yes yes 2;3 1.4922E-106 260.98 By MS/MS By MS/MS 1.43 0.495 4 3 5 2 296470000 0 233330000 63144000 2915 752 3037;3038 12174;12175;12176;12177;12178;12179;12180 9957;9958;9959;9960;9961;9962;9963 9959 346 7 0 113720000 13656000 ELEDLEGYQNTIVAGSLITK YYNSQTKESRWAKPKELEDLEGYQNTIVAG EGYQNTIVAGSLITKSNLHAMIKAEESSKQ K E L T K S 1 0 1 1 0 1 3 2 0 2 3 1 0 0 0 1 2 0 1 1 0 0 20 0 2192.1212 O75400 O75400 214 233 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 3.5889E-14 153.7 By MS/MS 2 0 1 1 7362800 0 0 7362800 2916 258 3039 12181 9964 9964 1 0 0 1663800 ELEDLLSPLEELVK KRLDQELDFILSQQKELEDLLSPLEELVKE KELEDLLSPLEELVKEQSGTIYLQHADEER K E L V K E 0 0 0 1 0 0 4 0 0 0 5 1 0 0 1 1 0 0 0 1 0 0 14 0 1625.8764 P37198 P37198 402 415 NUP62 Nuclear pore glycoprotein p62 yes yes 2 0.0051976 88.155 By MS/MS 3 0 1 1 2791200 0 0 2791200 2917 767 3040 12182 9965 9965 1 0 0 541350 ELEEAMAGER SGLQKQASAAEDRIRELEEAMAGERDKFRK EDRIRELEEAMAGERDKFRKMLDAKEQEMT R E L E R D 2 1 0 0 0 0 4 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1133.5023 Q03252 Q03252 337 346 LMNB2 Lamin-B2 yes yes 2 0.00019279 121.09 By MS/MS 4 0.816 1 1 1 3 48498000 0 0 48498000 2918 1156 3041 12183;12184;12185 9966;9967 9966 2 0 0 8269700 ELEEEWVK ALRPPLQNINSVQLKELEEEWVKLPTSAPR INSVQLKELEEEWVKLPTSAPRPTRFLRSQ K E L V K L 0 0 0 0 0 0 4 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 1060.5077 Q14008 Q14008 213 220 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.011278 92.187 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 51878000 0 5399500 46478000 2919 1279 3042 12186;12187;12188 9968;9969;9970 9968 3 0 2639200 10105000 ELEEIVQPIISK SHQDADIEDFKAKKKELEEIVQPIISKLYG KKKELEEIVQPIISKLYGSAGPPPTGEEDT K E L S K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 1 0 0 0 1 0 0 12 0 1396.7813 P11021 P11021 622 633 HSPA5 78 kDa glucose-regulated protein yes yes 2 5.5272E-05 145.25 By MS/MS By MS/MS By MS/MS 3 0 3 1 1 1 35321000 4259800 4038500 27022000 2920 516 3043 12189;12190;12191 9971;9972;9973 9972 3 4914800 1721600 5241000 ELEELRDKNESLTMR ALLNEKQAASPLEPKELEELRDKNESLTMR ELEELRDKNESLTMRLHETLKQCQDLKTEK K E L M R L 0 2 1 1 0 0 4 0 0 0 3 1 1 0 0 1 1 0 0 0 0 0 15 2 1861.9204 Q14980 Q14980 277 291 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 1.0122E-05 160.65 By MS/MS 1 0 1 1 27129000 0 0 27129000 2921 1327 3044 12192 9974 9974 1 0 0 5845400 ELEEWYAR NSRKQEAEWKEKAIKELEEWYARQDEQLQK WKEKAIKELEEWYARQDEQLQKTKANNRVA K E L A R Q 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 8 0 1094.5033 P09496 P09496 142 149 CLTA Clathrin light chain A yes yes 2 0.00047622 129.4 By MS/MS 6.5 0.5 1 1 2 19273000 0 0 19273000 2922 486 3045 12193;12194 9975 9975 1 0 0 2934200 ELEFYLR PGQCGRADGYVLEGKELEFYLRKIKARKGK DGYVLEGKELEFYLRKIKARKGK_______ K E L L R K 0 1 0 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 968.49673 P62241 P62241 194 200 RPS8 40S ribosomal protein S8 yes yes 2 0.013384 114.54 By matching By MS/MS By MS/MS 6.8 0.748 2 2 1 1 1 3 105060000 797130 9820900 94441000 2923 1008 3046 12195;12196;12197;12198;12199 9976;9977;9978 9977 3 1061400 5639200 16046000 ELEIKEMMAR AEEQYSDLEKEKIMKELEIKEMMARHKQEL EKIMKELEIKEMMARHKQELTEKDATIASL K E L A R H 1 1 0 0 0 0 3 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 10 1 1248.6206 O75116 O75116 947 956 ROCK2 Rho-associated protein kinase 2 yes yes 2 0.0083653 91.041 By MS/MS By MS/MS By MS/MS 3.92 1.21 2 2 6 1 2 2 6 5 278900000 78468000 121610000 78821000 2924 242 3047 12200;12201;12202;12203;12204;12205;12206;12207;12208;12209;12210;12211;12212 9979;9980;9981;9982;9983;9984;9985;9986;9987 9986 98;99 5 61219000 35905000 12915000 ELELEVINLQK SQLQPIQYQYQDNIKELELEVINLQKEKEE DNIKELELEVINLQKEKEELVLELQTAKKD K E L Q K E 0 0 1 0 0 1 3 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 11 0 1326.7395 O95239 O95239 563 573 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0017992 109.48 By MS/MS 1.5 0.5 1 1 2 10423000 0 0 10423000 2925 314 3048 12213;12214 9988 9988 1 0 0 2336800 ELELLPPPPQQK VQITAEQLLREAKERELELLPPPPQQKITD KERELELLPPPPQQKITDEEELNDYKLRKR R E L Q K I 0 0 0 0 0 2 2 0 0 0 3 1 0 0 4 0 0 0 0 0 0 0 12 0 1387.7711 Q9BZJ0 Q9BZJ0 202 213 CRNKL1 Crooked neck-like protein 1 yes yes 2 0.01232 90.657 By MS/MS 3 0 1 1 3558200 0 3558200 0 2926 1944 3049 12215 9989 9989 1 0 1516900 0 ELEPEMEFEIEPDKECK NRVESVEPSENEASKELEPEMEFEIEPDKE EPEMEFEIEPDKECKTLSPGKENVSALDME K E L C K T 0 0 0 1 1 0 7 0 0 1 1 2 1 1 2 0 0 0 0 0 0 0 17 1 2150.9388 Q9H307 Q9H307 424 440 PNN Pinin yes yes 3 0.019256 47.754 By MS/MS 2 0 1 1 5801800 0 0 5801800 2927 1978 3050 12216 9990 9990 1 0 0 1311100 ELEPFLLR EHGKGREYGYASLHKELEPFLLRRVKKDVE GYASLHKELEPFLLRRVKKDVEKSLPAKVE K E L L R R 0 1 0 0 0 0 2 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 1015.5702 O14646 O14646 689 696 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0013851 116.54 By matching By MS/MS By MS/MS 1.6 0.49 2 3 1 2 2 20659000 377260 5444800 14837000 2928 141 3051 12217;12218;12219;12220;12221 9991;9992;9993;9994 9993 4 454550 2611200 3227600 ELEPITTSQALQIAGR FYSLIKPSINEKGERELEPITTSQALQIAG LEPITTSQALQIAGRAGRFSSRFKEGEVTT R E L G R A 2 1 0 0 0 2 2 1 0 2 2 0 0 0 1 1 2 0 0 0 0 0 16 0 1725.9261 Q8IYB8 Q8IYB8 455 470 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 4.6787E-05 136.81 By MS/MS By MS/MS 3 0 2 1 1 14307000 0 2438200 11869000 2929 1592 3052 12222;12223 9995;9996 9996 2 0 1039400 2302000 ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK ANTLAEKDEFEHKRKELEQVCNPIISGLYQ AGGPGPGGFGAQGPKGGSGSGPTIEEVD__ K E L P K G 2 0 1 0 1 3 2 9 0 2 2 1 0 1 4 1 0 0 1 1 0 0 31 0 3054.4869 P0DMV9;P0DMV8 P0DMV9 598 628 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 1.5829E-33 117.54 By MS/MS 3 0 1 1 14218000 0 0 14218000 2930 501 3053 12224 9997 9997 1 0 0 2757700 ELESQISELQEDLESER EEEAAQKNMALKKIRELESQISELQEDLES ESQISELQEDLESERASRNKAEKQKRDLGE R E L E R A 0 1 0 1 0 2 6 0 0 1 3 0 0 0 0 3 0 0 0 0 0 0 17 0 2032.9437 P35579 P35579 1108 1124 MYH9 Myosin-9 yes yes 2 1.2988E-75 241.51 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 16778000 0 3380700 13397000 2931 752 3054 12225;12226;12227 9998;9999 9999 2 0 1652400 2924200 ELFDVVANPLVNDLIHGK QYSFKQVFGTHTTQKELFDVVANPLVNDLI DVVANPLVNDLIHGKNGLLFTYGVTGSGKT K E L G K N 1 0 2 2 0 0 1 1 1 1 3 1 0 1 1 0 0 0 0 3 0 0 18 0 1992.068 Q02241 Q02241 87 104 KIF23 Kinesin-like protein KIF23 yes yes 3 2.4941E-09 131.39 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 19357000 0 8473300 10883000 2932 1145 3055 12228;12229;12230;12231 10000;10001;10002 10002 3 0 3815600 2222300 ELFESSTNNNKDTK SLESLICESRDKFIRELFESSTNNNKDTKQ RELFESSTNNNKDTKQKAGKLSFISVGNKF R E L T K Q 0 0 3 1 0 0 2 0 0 0 1 2 0 1 0 2 2 0 0 0 0 0 14 1 1625.7533 Q9UM54 Q9UM54 619 632 MYO6 Unconventional myosin-VI yes yes 3 0.014248 62.011 By MS/MS 2 0 1 1 2954300 0 2954300 0 2933 2198 3056 12232 10003 10003 1 0 1330300 0 ELFFLPLGFALK YLENGTVMLNFIYRKELFFLPLGFALKALV YRKELFFLPLGFALKALVSFSDYQIFQELI K E L L K A 1 0 0 0 0 0 1 1 0 0 4 1 0 3 1 0 0 0 0 0 0 0 12 0 1393.801 Q9H9Y6 Q9H9Y6 243 254 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 0.01043 93.649 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 3476800 0 1038600 2438100 2934 2000 3057 12233;12234;12235 10004;10005 10005 2 0 467700 530410 ELFGPELFR PPGTGKTSTILAAARELFGPELFRLRVLEL ILAAARELFGPELFRLRVLELNASDERGIQ R E L F R L 0 1 0 0 0 0 2 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 9 0 1106.576 P35249 P35249 94 102 RFC4 Replication factor C subunit 4 yes yes 2 0.00073627 113.41 By matching By MS/MS 5 0.816 1 1 1 1 2 20396000 2245800 0 18150000 2935 744 3058 12236;12237;12238 10006;10007 10006 2 1752100 0 2661600 ELFPIQMEGVK LPNPGTFEECHRKCKELFPIQMEGVKLTVN RKCKELFPIQMEGVKLTVNKGLSNHFQVNH K E L V K L 0 0 0 0 0 1 2 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1289.669 O96008 O96008 92 102 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 2 0.0096619 91.867 By MS/MS 6 0.816 1 1 1 3 22135000 0 0 22135000 2936 353 3059 12239;12240;12241 10008 10008 1 0 0 3327100 ELFQETLESLR RFLTNGPSSSPGQERELFQETLESLRVLGF GQERELFQETLESLRVLGFSHEEIISMLRM R E L L R V 0 1 0 0 0 1 3 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 11 0 1363.6983 Q7Z406 Q7Z406 343 353 MYH14 Myosin-14 yes yes 2 0.005072 101.11 By MS/MS 1 0 1 1 2617900 0 2617900 0 2937 1531 3060 12242 10009 10009 1 0 1279600 0 ELFQTPGHTEEAVAAGK PKEEAQALEDLTGFKELFQTPGHTEEAVAA FQTPGHTEEAVAAGKTTKMPCESSPPESAD K E L G K T 3 0 0 0 0 1 3 2 1 0 1 1 0 1 1 0 2 0 0 1 0 0 17 0 1783.8741 P46013 P46013 1351 1367 MKI67 Antigen KI-67 yes yes 2;3 1.062E-05 112.44 By matching By MS/MS 2 0.707 1 2 1 1 3 30974000 4821600 0 26153000 2938 821 3061 12243;12244;12245;12246 10010;10011 10011 2 5809500 0 5672900 ELFQTPGHTEELVAAGK PKEKAQALEDLAGFKELFQTPGHTEELVAA FQTPGHTEELVAAGKTTKIPCDSPQSDPVD K E L G K T 2 0 0 0 0 1 3 2 1 0 2 1 0 1 1 0 2 0 0 1 0 0 17 0 1825.921 P46013 P46013 1229 1245 MKI67 Antigen KI-67 yes yes 2;3 5.7098E-05 101.38 By MS/MS 1.67 0.471 1 2 3 30991000 0 0 30991000 2939 821 3062 12247;12248;12249 10012;10013;10014 10013 3 0 0 6931700 ELFQTPGPSEESMTDEK PKEEAQSLEDLAGFKELFQTPGPSEESMTD FQTPGPSEESMTDEKTTKIACKSPPPESVD K E L E K T 0 0 0 1 0 1 4 1 0 0 1 1 1 1 2 2 2 0 0 0 0 0 17 0 1923.8408 P46013 P46013 1107 1123 MKI67 Antigen KI-67 yes yes 2 0.0041467 77.527 By MS/MS 2 0 1 1 4858000 0 0 4858000 2940 821 3063 12250 10015 10015 1 0 0 1097800 ELFQTPGTDKPTTDEK PKEKAQALEDLAGFKELFQTPGTDKPTTDE LFQTPGTDKPTTDEKTTKIACKSPQPDPVD K E L E K T 0 0 0 2 0 1 2 1 0 0 1 2 0 1 2 0 4 0 0 0 0 0 16 1 1805.8683 P46013 P46013 2321 2336 MKI67 Antigen KI-67 yes yes 3 0.00015367 97.073 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 32105000 0 5931000 26174000 2941 821 3064 12251;12252;12253 10016;10017;10018 10018 3 0 2899000 5737400 ELFSAPGHTEESMTIDK RKEKARALEDLVDFKELFSAPGHTEESMTI FSAPGHTEESMTIDKNTKIPCKSPPPELTD K E L D K N 1 0 0 1 0 0 3 1 1 1 1 1 1 1 1 2 2 0 0 0 0 0 17 0 1890.8669 P46013 P46013 2564 2580 MKI67 Antigen KI-67 yes yes 2 3.3134E-07 162.38 By MS/MS 1.5 0.5 1 1 2 10260000 0 0 10260000 2942 821 3065 12254;12255 10019 10019 1 0 0 2258000 ELGDHVTNLR FIETHYLNEQVKAIKELGDHVTNLRKMGAP VKAIKELGDHVTNLRKMGAPESGLAEYLFD K E L L R K 0 1 1 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 1 0 0 10 0 1152.5887 P02794 P02794 148 157 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 2 2.4741E-16 177.97 By matching By MS/MS 7 0 2 1 1 14190000 0 1343800 12846000 2943 403 3066 12256;12257 10020 10020 1 0 771640 2279400 ELGDHVTNLRK FIETHYLNEQVKAIKELGDHVTNLRKMGAP KAIKELGDHVTNLRKMGAPESGLAEYLFDK K E L R K M 0 1 1 1 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 1 0 0 11 1 1280.6837 P02794 P02794 148 158 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 3 0.05217 44.299 By MS/MS By MS/MS 7 0 2 1 1 5850200 0 3156200 2694000 2944 403 3067 12258;12259 10021;10022 10022 2 0 1812300 478040 ELGELIPLR QAAGGLRAELLRAQRELGELIPLRQKVAEQ LLRAQRELGELIPLRQKVAEQERTAQQLRA R E L L R Q 0 1 0 0 0 0 2 1 0 1 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1038.6073 Q14980 Q14980 1405 1413 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 3.3307E-17 183.74 By matching By MS/MS By MS/MS 1 0 3 1 1 1 57457000 682660 16249000 40526000 2945 1327 3068 12260;12261;12262 10023;10024 10024 2 682660 7942300 8731900 ELGFPYMTPVQSATIPLFMR SLPVPLHPQVLGALRELGFPYMTPVQSATI YMTPVQSATIPLFMRNKDVAAEAVTGSGKT R E L M R N 1 1 0 0 0 1 1 1 0 1 2 0 2 2 3 1 2 0 1 1 0 0 20 0 2297.1588 Q8NHQ9 Q8NHQ9 26 45 DDX55 ATP-dependent RNA helicase DDX55 yes yes 2;3 5.6431E-05 84.506 By MS/MS 3.33 0.471 2 1 3 1447200 0 1447200 0 2946 1646 3069 12263;12264;12265 10025;10026;10027 10025 3 0 544900 0 ELGGLGMLSMGHVLIPQSDLR KMPSRFPPVVFYTPKELGGLGMLSMGHVLI MLSMGHVLIPQSDLRWSKQTDVGITHFRSG K E L L R W 0 1 0 1 0 1 1 4 1 1 5 0 2 0 1 2 0 0 0 1 0 0 21 0 2222.1551 Q6P2Q9 Q6P2Q9 1321 1341 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 3.0039E-06 88.036 By MS/MS By MS/MS 1 0 2 1 1 50017000 0 1833200 48184000 2947 1490 3070 12266;12267 10028;10029 10029 2 0 896030 10382000 ELGICPDDAAVIPIK TNRTVQIAAVVDVIRELGICPDDAAVIPIK ELGICPDDAAVIPIKNNRFYTIEILKVE__ R E L I K N 2 0 0 2 1 0 1 1 0 3 1 1 0 0 2 0 0 0 0 1 0 0 15 0 1609.8385 P12273 P12273 119 133 PIP Prolactin-inducible protein yes yes 2 0.00063643 103.43 By MS/MS 7 2.16 1 1 1 3 39570000 39570000 0 0 2948 537 3071 12268;12269;12270 10030;10031;10032 10030 3 29676000 0 0 ELGIQVHSVTR RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ VPTRELGIQVHSVTRQLAQFCNITTCLAVG R E L T R Q 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1237.6779 Q96GQ7 Q96GQ7 300 310 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2;3 2.8501E-07 159.34 By MS/MS By MS/MS 2.17 0.687 1 3 2 2 4 61178000 0 22719000 38459000 2949 1793 3072 12271;12272;12273;12274;12275;12276 10033;10034;10035;10036 10033 4 0 10231000 7896000 ELGITALHIK YAAMLAAQDVAQRCKELGITALHIKLRATG AQRCKELGITALHIKLRATGGNRTKTPGPG K E L I K L 1 0 0 0 0 0 1 1 1 2 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1093.6495 P62263 P62263 87 96 RPS14 40S ribosomal protein S14 yes yes 2 0.0088024 89.698 By matching By MS/MS 8.33 0.471 2 1 1 2 95127000 0 29387000 65740000 2950 1012 3073 12277;12278;12279 10037 10037 1 0 13370000 11159000 ELGIWEPLAVK TWGVNGETGTLVDMKELGIWEPLAVKLQTY VDMKELGIWEPLAVKLQTYKTAVETAVLLL K E L V K L 1 0 0 0 0 0 2 1 0 1 2 1 0 0 1 0 0 1 0 1 0 0 11 0 1253.702 P49368 P49368 492 502 CCT3 T-complex protein 1 subunit gamma yes yes 2 0.026181 80.755 By MS/MS 4 0 1 1 6110900 0 6110900 0 2951 854 3074 12280 10038 10038 1 0 2028000 0 ELGNIIQK LMQAIDAVKPGVRYRELGNIIQKHAQANGF KPGVRYRELGNIIQKHAQANGFSVVRSYCG R E L Q K H 0 0 1 0 0 1 1 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 P53582 P53582 271 278 METAP1 Methionine aminopeptidase 1 yes yes 2 0.016733 86.866 By MS/MS 5 0 1 1 4731700 0 4731700 0 2952 920 3075 12281 10039 10039 1 0 1219700 0 ELGPLPDDDDMASPK NDAHILEKLLKEKRKELGPLPDDDDMASPK ELGPLPDDDDMASPKLKLSRKSGISPKKSK K E L P K L 1 0 0 4 0 0 1 1 0 0 2 1 1 0 3 1 0 0 0 0 0 0 15 0 1598.7134 Q86U86 Q86U86 624 638 PBRM1 Protein polybromo-1 yes yes 2 0.00041407 114.72 By MS/MS 1.5 0.5 1 1 2 16595000 0 0 16595000 2953 1545 3076 12282;12283 10040 10040 1 0 0 3609600 ELGSSTNALR LKTMKMRGQAFVIFKELGSSTNALRQLQGF FVIFKELGSSTNALRQLQGFPFYGKPMRIQ K E L L R Q 1 1 1 0 0 0 1 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1046.5356 P08579 P08579 58 67 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 2 0.0010717 110.41 By MS/MS By MS/MS 7 0 2 1 1 23835000 0 12806000 11029000 2954 473 3077 12284;12285 10041;10042 10041 2 0 7353100 1957000 ELGSSVALYSR FYVPDMKPSMFDVSRELGSSVALYSRKVLI DVSRELGSSVALYSRKVLIQTKATDILPKW R E L S R K 1 1 0 0 0 0 1 1 0 0 2 0 0 0 0 3 0 0 1 1 0 0 11 0 1180.6088 Q12931 Q12931 358 368 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 0.027578 79.974 By MS/MS 3 0 1 1 3213200 0 3213200 0 2955 1212 3078 12286 10043 10043 1 0 1369800 0 ELGTVMR FSLFDKDGDGTITTKELGTVMRSLGQNPTE GDGTITTKELGTVMRSLGQNPTEAELQDMI K E L M R S 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 7 0 804.41637 P0DP25;P0DP24;P0DP23;P02585 P0DP25 32 38 TNNC2 Troponin C, skeletal muscle no no 2 0.06211 74.415 By MS/MS By matching 9.67 0.471 1 2 2 1 10480000 9715500 0 764040 2956 505 3079 12287;12288;12289 10044 10044 1 12702000 0 1671000 ELGVGIALR RWRLVDSKGFDEYMKELGVGIALRKMGAMA FDEYMKELGVGIALRKMGAMAKPDCIITCD K E L L R K 1 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 926.55492 Q01469 Q01469 25 33 FABP5 Fatty acid-binding protein, epidermal yes yes 2 2.8241E-07 158.36 By MS/MS By MS/MS 5.1 3.18 2 1 1 1 1 1 1 1 1 8 2 134780000 127310000 0 7478500 2957 1133 3080 12290;12291;12292;12293;12294;12295;12296;12297;12298;12299 10045;10046;10047;10048;10049;10050;10051;10052 10050 6 126030000 0 11876000 ELIHLLPIKDK KYEKIPRTLQTAPEKELIHLLPIKDKSGII APEKELIHLLPIKDKSGIIPQTREKPVTDS K E L D K S 0 0 0 1 0 0 1 0 1 2 3 2 0 0 1 0 0 0 0 0 0 0 11 1 1317.802 Q8WTT2 Q8WTT2 148 158 NOC3L Nucleolar complex protein 3 homolog yes yes 3 0.0067162 79.036 By MS/MS 2 0 1 1 4823500 0 0 4823500 2958 1670 3081 12300 10053 10053 1 0 0 1090000 ELIIGDR IKAVDSLVPIGRGQRELIIGDRQTGKTSIA VPIGRGQRELIIGDRQTGKTSIAIDTIINQ R E L D R Q 0 1 0 1 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 814.45487 P25705 P25705 208 214 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.06211 74.415 By MS/MS 4 0 1 1 3560400 0 0 3560400 2959 661 3082 12301 10054 10054 1 0 0 581540 ELILFSNSDNER GQTTTYLTYNDFINKELILFSNSDNERSIP INKELILFSNSDNERSIPSMVDGLKPGQRK K E L E R S 0 1 2 1 0 0 2 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 12 0 1435.6943 P11388;Q02880 P11388 702 713 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 2.4442E-45 217.66 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 152560000 0 12722000 139830000 2960 524;1150 3083 12302;12303;12304;12305 10055;10056;10057;10058 10057 4 0 6039100 30517000 ELILHNPVTLK FLMSATFNEDVQALKELILHNPVTLKLQES QALKELILHNPVTLKLQESQLPGPDQLQQF K E L L K L 0 0 1 0 0 0 1 0 1 1 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1275.7551 Q9NY93 Q9NY93 209 219 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2;3 1.6436E-06 153.1 By matching By MS/MS By MS/MS 4 0 4 1 2 1 26386000 1001500 14007000 11378000 2961 2095 3084 12306;12307;12308;12309 10059;10060;10061 10061 3 781350 4648400 1858400 ELIPNIPFQMLLR RFLYECPWRRLQELRELIPNIPFQMLLRGA LRELIPNIPFQMLLRGANAVGYTNYPDNVV R E L L R G 0 1 1 0 0 1 1 0 0 2 3 0 1 1 2 0 0 0 0 0 0 0 13 0 1582.8905 P11498 P11498 632 644 PC Pyruvate carboxylase, mitochondrial yes yes 2 0.0058587 98.033 By MS/MS 2 0 1 1 962420 0 962420 0 2962 527 3085 12310 10062 10062 1 0 433390 0 ELIPTEEALR PYTEQTISLFQAMKKELIPTEEALRLLDAQ QAMKKELIPTEEALRLLDAQLATGGIVDPR K E L L R L 1 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1169.6292 Q15149 Q15149 3926 3935 PLEC Plectin yes yes 2 0.0080541 91.318 By MS/MS By MS/MS 1 0 2 1 1 53045000 0 19875000 33171000 2963 1348 3086 12311;12312 10063;10064 10063 2 0 9714400 7147200 ELIQEYGAQSGGLEK WDLLSSPYFTEDRKRELIQEYGAQSGGLEK ELIQEYGAQSGGLEKLLEIITTTIEETETQ R E L E K L 1 0 0 0 0 2 3 3 0 1 2 1 0 0 0 1 0 0 1 0 0 0 15 0 1620.7995 P58107 P58107 1812 1826 EPPK1 Epiplakin yes yes 2 1.4888E-07 163.99 By MS/MS By MS/MS 1 0 2 1 1 28592000 0 16083000 12508000 2964 958 3087 12313;12314 10065;10066 10066 1 0 7861400 2695100 ELISNASDALDK LIINTFYSNKEIFLRELISNASDALDKIRY FLRELISNASDALDKIRYESLTDPSKLDSG R E L D K I 2 0 1 2 0 0 1 0 0 1 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1274.6354 P14625;P08238 P08238 42 53 HSP90B1;HSP90AB1 Endoplasmin;Heat shock protein HSP 90-beta no no 2 0.0017149 99.973 By MS/MS By matching By MS/MS 6.2 3.37 1 1 2 1 1 2 2 1 3 6 73452000 14128000 3083800 56241000 2965 469;560 3088 12315;12316;12317;12318;12319;12320;12321;12322;12323;12324 10067;10068;10069;10070;10071;10072;10073 10070 7 16300000 6207400 23200000 ELISNASDALDKIR LIINTFYSNKEIFLRELISNASDALDKIRY RELISNASDALDKIRYESLTDPSKLDSGKE R E L I R Y 2 1 1 2 0 0 1 0 0 2 2 1 0 0 0 2 0 0 0 0 0 0 14 1 1543.8206 P14625;P08238 P08238 42 55 HSP90B1;HSP90AB1 Endoplasmin;Heat shock protein HSP 90-beta no no 2;3 0.0027606 131.43 By MS/MS By matching 2.33 0.471 2 1 2 1 17237000 0 11731000 5506300 2966 469;560 3089 12325;12326;12327 10074;10075 10074 2 0 5282400 1068000 ELISNSSDALDK LIINTFYSNKEIFLRELISNSSDALDKIRY FLRELISNSSDALDKIRYESLTDPSKLDSG R E L D K I 1 0 1 2 0 0 1 0 0 1 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1290.6303 P07900;Q14568 P07900 47 58 HSP90AA1;HSP90AA2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2 yes no 2 0.0017683 110.38 By MS/MS 3 0 1 1 11054000 11054000 0 0 2967 466 3090 12328 10076 10076 1 12754000 0 0 ELISNSSDALDKIR LIINTFYSNKEIFLRELISNSSDALDKIRY RELISNSSDALDKIRYESLTDPSKLDSGKE R E L I R Y 1 1 1 2 0 0 1 0 0 2 2 1 0 0 0 3 0 0 0 0 0 0 14 1 1559.8155 P07900 P07900 47 60 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 0.00012137 119.25 By MS/MS By matching 4.75 3.11 1 1 1 1 2 2 19966000 0 10173000 9793500 2968 466 3091 12329;12330;12331;12332 10077;10078 10077 2 0 11993000 1802200 ELKLENHQENSR ERKEERQKKRKREKKELKLENHQENSRNQK EKKELKLENHQENSRNQKPKKRKKGQEADL K E L S R N 0 1 2 0 0 1 3 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 12 1 1495.7379 Q9NX58 Q9NX58 205 216 LYAR Cell growth-regulating nucleolar protein yes yes 3 0.0013126 101.6 By MS/MS 5.5 0.5 1 1 2 2561100 0 2561100 0 2969 2086 3092 12333;12334 10079 10079 1 0 733090 0 ELLAALQK LINDVLHHCQRKQARELLAALQKVVVPIYC CQRKQARELLAALQKVVVPIYCTSFLAVEE R E L Q K V 2 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 884.53312 Q8IWX8 Q8IWX8 232 239 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 2 0.049679 73.039 By MS/MS 2 0 1 1 5194500 0 5194500 0 2970 1577 3093 12335 10080 10080 1 0 2339200 0 ELLADQNLK FIDIYLDELSKVGGKELLADQNLKFIDPFC SKVGGKELLADQNLKFIDPFCKIAAKTKDH K E L L K F 1 0 1 1 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1042.5659 Q14684 Q14684 183 191 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.012376 87.251 By matching By MS/MS 2.5 0.5 1 1 1 1 41611000 15905000 0 25706000 2971 1313 3094 12336;12337 10081 10081 1 19164000 0 4985700 ELLDGGANPLQR ALHYAVLADDYRTVKELLDGGANPLQRNEM TVKELLDGGANPLQRNEMGHTPLDYAREGE K E L Q R N 1 1 1 1 0 1 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 12 0 1281.6677 Q9H078 Q9H078 284 295 CLPB Caseinolytic peptidase B protein homolog yes yes 2 0.0029766 107.69 By MS/MS 4 0 1 1 7610100 0 0 7610100 2972 1958 3095 12338 10082 10082 1 0 0 1243000 ELLDMMIAEEESLKER DQRLQRTEVVKKHIKELLDMMIAEEESLKE LLDMMIAEEESLKERLIKSISVCQKELNTL K E L E R L 1 1 0 1 0 0 5 0 0 1 3 1 2 0 0 1 0 0 0 0 0 0 16 1 1934.9329 O43663 O43663 49 64 PRC1 Protein regulator of cytokinesis 1 yes yes 3 2.7788E-05 101.53 By MS/MS 3 0.816 1 1 1 3 6683500 0 0 6683500 2973 206 3096 12339;12340;12341 10083 10083 1 0 0 1296400 ELLDQDLSR E L S R 0 1 0 2 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1087.551 REV__Q9UL54 yes yes 2 0.00060882 127.84 By MS/MS By matching By matching 4.6 2.94 2 1 2 1 1 2 1 7 1 2 44837000 30714000 492650 13629000 + 2974 2344 3097 12342;12343;12344;12345;12346;12347;12348;12349;12350;12351 10084;10085;10086;10087 10084 4 29997000 163490 2149200 ELLEEVLEGK EPAKEVLLKDLLETRELLEEVLEGKQRVEE LLETRELLEEVLEGKQRVEEQLRLRERELT R E L G K Q 0 0 0 0 0 0 4 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 0 1157.618 Q9P2M7 Q9P2M7 468 477 CGN Cingulin yes yes 2 0.0061218 95.502 By MS/MS 2 0 1 1 5414600 0 0 5414600 2975 2126 3098 12352 10088 10088 1 0 0 1223600 ELLELASR IRIEGDPQGVQQAKRELLELASRMENERTK GVQQAKRELLELASRMENERTKDLIIEQRF R E L S R M 1 1 0 0 0 0 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 8 0 929.5182 Q00341 Q00341 496 503 HDLBP Vigilin yes yes 2 2.9687E-16 142.64 By MS/MS 2 0 1 1 0 0 0 0 2976 1122 3099 12353 10089 10089 1 0 0 0 ELLEQISAFDNVPR ISELIKRPNVSPKVRELLEQISAFDNVPRK RELLEQISAFDNVPRKKAKFQNWMKNSLKV R E L P R K 1 1 1 1 0 1 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 14 0 1629.8362 Q9NX58 Q9NX58 96 109 LYAR Cell growth-regulating nucleolar protein yes yes 2 2.3178E-74 249.23 By MS/MS By MS/MS 4.44 1.64 1 1 2 3 1 1 2 7 76585000 0 8516100 68069000 2977 2086 3100 12354;12355;12356;12357;12358;12359;12360;12361;12362 10090;10091;10092;10093;10094 10093 4 0 2380200 10505000 ELLGQGLLLR AHNALLDIQSSGRAKELLGQGLLLRSLQER SGRAKELLGQGLLLRSLQERNQEQEKVERR K E L L R S 0 1 0 0 0 1 1 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1110.6761 Q99613;B5ME19 Q99613 644 653 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 0.00019575 141.78 By matching By MS/MS By MS/MS 2 0 3 1 1 1 6441700 334680 1578000 4528900 2978 21 3101 12363;12364;12365 10095;10096 10096 2 403250 710610 1023500 ELLIFNK IKDELKKVCSTNDLKELLIFNKQQVPSGES VCSTNDLKELLIFNKQQVPSGESAILDRVA K E L N K Q 0 0 1 0 0 0 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 875.51165 P09874 P09874 263 269 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0072219 124.86 By MS/MS By MS/MS By MS/MS 2.5 1.32 2 3 1 1 1 1 3 4 286400000 11234000 53795000 221380000 2979 492 3102 12366;12367;12368;12369;12370;12371;12372;12373 10097;10098;10099;10100;10101;10102;10103;10104 10098 8 13535000 23605000 48154000 ELLIIGGVAAR NIKQFKKYIDNPKLRELLIIGGVAARDQLS PKLRELLIIGGVAARDQLSVLENGVDIVVG R E L A R D 2 1 0 0 0 0 1 2 0 2 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1110.6761 Q92499 Q92499 320 330 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 0.0011072 113.26 By matching By MS/MS By MS/MS 4.4 2.33 3 1 1 1 2 2 19335000 698970 9134500 9501900 2980 1705 3103 12374;12375;12376;12377;12378 10105;10106;10107 10107 3 806450 5330000 1818700 ELLIQFYK RPRQEIIEDLSYMVRELLIQFYKSTRFKPT DLSYMVRELLIQFYKSTRFKPTRIIFYRDG R E L Y K S 0 0 0 0 0 1 1 0 0 1 2 1 0 1 0 0 0 0 1 0 0 0 8 0 1052.5906 Q9UL18;Q9UKV8;Q9H9G7;Q9HCK5 Q9UL18 646 653 AGO1;AGO2;AGO3;AGO4 Protein argonaute-1;Protein argonaute-2;Protein argonaute-3;Protein argonaute-4 yes no 2 0.055026 71.715 By MS/MS 2 0 1 1 1650100 0 0 1650100 2981 2186 3104 12379 10108 10108 1 0 0 372890 ELLIQIFSTPR FDPAFDELPHYALLKELLIQIFSTPRYHPK ALLKELLIQIFSTPRYHPKSQPFVDHVFTF K E L P R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 1 1 1 1 0 0 0 0 0 11 0 1315.75 Q8TDN6 Q8TDN6 183 193 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 4.7667E-59 228.05 By matching By MS/MS By MS/MS 5.2 0.748 1 2 2 1 2 2 17793000 770730 12867000 4155300 2982 1663 3105 12380;12381;12382;12383;12384 10109;10110;10111 10109 3 601310 3405300 616180 ELLITDLLPDNR KGSKQQCLMALDTFKELLITDLLPDNRKLR TFKELLITDLLPDNRKLRIFSQRPFDKLEQ K E L N R K 0 1 1 2 0 0 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1410.7718 Q03701 Q03701 291 302 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 9.4133E-05 140.45 By MS/MS 1.5 0.5 1 1 2 10489000 0 0 10489000 2983 1157 3106 12385;12386 10112;10113 10112 2 0 0 2342400 ELLLQPVTISR VERHNKPEVEVRSSKELLLQPVTISRNEKE RSSKELLLQPVTISRNEKEKVLIEGSINSV K E L S R N 0 1 0 0 0 1 1 0 0 1 3 0 0 0 1 1 1 0 0 1 0 0 11 0 1267.75 P59998 P59998 45 55 ARPC4 Actin-related protein 2/3 complex subunit 4 yes yes 2 0.00026016 134.68 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 32017000 0 13528000 18489000 2984 960 3107 12387;12388;12389;12390;12391 10114;10115;10116;10117 10115 4 0 6490200 2977900 ELLLSAIDSVNATSK NKDEKDILRCAHLQKELLLSAIDSVNATSK ELLLSAIDSVNATSKTGGYLVYCTCSITVE K E L S K T 2 0 1 1 0 0 1 0 0 1 3 1 0 0 0 3 1 0 0 1 0 0 15 0 1559.8407 P46087 P46087 493 507 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 1.2344E-08 174.24 By MS/MS By MS/MS By MS/MS 2.67 0.745 3 2 1 1 3 2 71187000 2627400 22678000 45882000 2985 824 3108 12392;12393;12394;12395;12396;12397 10118;10119;10120;10121;10122;10123;10124 10122 7 3165700 9916300 9951900 ELLLTGPGLEER ESWPELELAERERRRELLLTGPGLEERVRA RRRELLLTGPGLEERVRAAGGQLPPRLFTL R E L E R V 0 1 0 0 0 0 3 2 0 0 4 0 0 0 1 0 1 0 0 0 0 0 12 0 1325.7191 Q8N1G4 Q8N1G4 23 34 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 1.1875E-12 183.67 By matching By MS/MS 3 0 2 1 1 14133000 1175000 0 12958000 2986 1600 3109 12398;12399 10125 10125 1 1355700 0 2513200 ELLNFYAWQHR SLRVLERERRKRSRKELLNFYAWQHRESKM RSRKELLNFYAWQHRESKMEHLAQLRKKFE K E L H R E 1 1 1 0 0 1 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 0 11 0 1475.731 Q9Y3A4 Q9Y3A4 237 247 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2;3 3.7166E-05 147.04 By MS/MS By MS/MS 6 0 4 2 2 21468000 0 6313200 15154000 2987 2262 3110 12400;12401;12402;12403 10126;10127;10128 10127 3 0 2185400 2267300 ELLNPVVEFVSHPSTTCR IIYKMMPKLKPVELRELLNPVVEFVSHPST NPVVEFVSHPSTTCREQMYNILMWIHDNYR R E L C R E 0 1 1 0 1 0 2 0 1 0 2 0 0 1 2 2 2 0 0 3 0 0 18 0 2084.0361 P78527 P78527 2453 2470 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00025274 83.253 By MS/MS 1 0 1 1 4201200 0 0 4201200 2988 1089 3111 12404 10129 10129 1 0 0 905210 ELLPLIYHHLLR ______________________________ KRRELLPLIYHHLLRAGYVRAAREVKEQSG R E L L R A 0 1 0 0 0 0 1 0 2 1 5 0 0 0 1 0 0 0 1 0 0 0 12 0 1515.8926 Q13428 Q13428 9 20 TCOF1 Treacle protein yes yes 3 0.0050721 79.659 By MS/MS 2 0.816 1 1 1 3 16647000 0 0 16647000 2989 1247 3112 12405;12406;12407 10130;10131 10131 2 0 0 3597700 ELLQEFIDSDAAAEAMGK VEKTINSDISIPEYKELLQEFIDSDAAAEA QEFIDSDAAAEAMGKFKQCFLNQSHRTLKN K E L G K F 4 0 0 2 0 1 3 1 0 1 2 1 1 1 0 1 0 0 0 0 0 0 18 0 1936.9088 O75556 O75556 44 61 SCGB2A1 Mammaglobin-B yes yes 2;3 2.0199E-64 228.8 By MS/MS 6.1 2.12 1 2 2 1 2 2 10 50413000 50413000 0 0 2990 272 3113 12408;12409;12410;12411;12412;12413;12414;12415;12416;12417 10132;10133;10134;10135;10136;10137;10138;10139 10133 8 37879000 0 0 ELLQSFDSALQSVK LMLLTLSTRDVQESRELLQSFDSALQSVKS RELLQSFDSALQSVKSLGGNDELSATFLEM R E L V K S 1 0 0 1 0 2 1 0 0 0 3 1 0 1 0 3 0 0 0 1 0 0 14 0 1563.8144 P49792 P49792 257 270 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 8.3747E-08 172.8 By MS/MS By MS/MS 1 0 2 1 1 24205000 0 3376700 20828000 2991 871 3114 12418;12419 10140;10141 10141 2 0 1650500 4487800 ELLSAEENKR SEEFGENEEENVHSKELLSAEENKRAHELI NVHSKELLSAEENKRAHELIEAEGIEDIEK K E L K R A 1 1 1 0 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 10 1 1187.6146 Q9NWH9 Q9NWH9 141 150 SLTM SAFB-like transcription modulator yes yes 2 0.016661 88.948 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 4471500 0 1325100 3146400 2992 2078 3115 12420;12421;12422 10142;10143 10142 2 0 596720 687960 ELLSNWYHFLVTR LKIMLGDEAALLEQKELLSNWYHFLVTRLL QKELLSNWYHFLVTRLLYSNPTVKPIDLHY K E L T R L 0 1 1 0 0 0 1 0 1 0 3 0 0 1 0 1 1 1 1 1 0 0 13 0 1676.8675 Q9BW27 Q9BW27 299 311 NUP85 Nuclear pore complex protein Nup85 yes yes 2;3 1.3243E-11 181.68 By MS/MS 3 0 2 2 16172000 0 0 16172000 2993 1920 3116 12423;12424 10144;10145 10145 2 0 0 3136700 ELLTLDEKDPR WRVKFTLAKIRKAARELLTLDEKDPRRLFE KAARELLTLDEKDPRRLFEGNALLRRLVRI R E L P R R 0 1 0 2 0 0 2 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 11 1 1327.6983 P46781 P46781 59 69 RPS9 40S ribosomal protein S9 yes yes 2 0.041815 100.25 By MS/MS 7.5 0.5 1 1 2 151760000 0 0 151760000 2994 831 3117 12425;12426 10146 10146 1 0 0 26753000 ELLTSFGPLK FIGGLPNYLNDDQVKELLTSFGPLKAFNLV DDQVKELLTSFGPLKAFNLVKDSATGLSKG K E L L K A 0 0 0 0 0 0 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 10 0 1103.6227 P26368 P26368 277 286 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2 0.0004895 135.83 By MS/MS By MS/MS By MS/MS 4.5 1.32 2 3 1 1 1 1 2 5 303390000 9089300 108030000 186270000 2995 668 3118 12427;12428;12429;12430;12431;12432;12433;12434 10147;10148;10149;10150;10151;10152;10153 10147 7 7091200 36403000 31634000 ELLTTMGDR FDEEATGTIQEDYLRELLTTMGDRFTDEEV QEDYLRELLTTMGDRFTDEEVDELYREAPI R E L D R F 0 1 0 1 0 0 1 1 0 0 2 0 1 0 0 0 2 0 0 0 0 0 9 0 1034.5066 P19105;O14950;P24844 P19105 124 132 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2 0.0079014 91.853 By MS/MS By MS/MS 8.12 1.36 1 2 2 1 2 5 3 109870000 0 52709000 57164000 2996 154;652 3119 12435;12436;12437;12438;12439;12440;12441;12442 10154;10155;10156;10157;10158;10159 10157 6 0 39177000 9463800 ELLVLPIYANLPSDMQAR EMLQDRCRRLGSKIRELLVLPIYANLPSDM VLPIYANLPSDMQARIFQPTPPGARKVVVA R E L A R I 2 1 1 1 0 1 1 0 0 1 4 0 1 0 2 1 0 0 1 1 0 0 18 0 2042.087 O60231 O60231 641 658 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 2 2.4881E-08 143.42 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 4224500 0 1770400 2454100 2997 221 3120 12443;12444;12445 10160;10161;10162 10161 3 0 797230 507870 ELLVSQHTVQLVGGLSPLSSPSDTK VLIQLSPPNTDADTRELLVSQHTVQLVGGL LVGGLSPLSSPSDTKAESPAEKVPEESVLP R E L T K A 0 0 0 1 0 2 1 2 1 0 5 1 0 0 2 5 2 0 0 3 0 0 25 0 2591.3806 Q9UKV3 Q9UKV3 463 487 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 3.1659E-16 102.07 By MS/MS 1.5 0.5 1 1 2 8764100 0 0 8764100 2998 2184 3121 12446;12447 10163 10163 1 0 0 1925400 ELLYGGTSPTAETILK APNPAKATVTAMIARELLYGGTSPTAETIL LLYGGTSPTAETILKNNISSGHVPHGPLTR R E L L K N 1 0 0 0 0 0 2 2 0 1 3 1 0 0 1 1 3 0 1 0 0 0 16 0 1691.8982 O95793 O95793 458 473 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 6.2319E-06 158.04 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 4 2 146890000 0 76643000 70249000 2999 341 3122 12448;12449;12450;12451;12452;12453 10164;10165;10166;10167 10167 4 0 25989000 12067000 ELMAWNQAENR VLAERKALKDAAEHRELMAWNQAENRRLHE AEHRELMAWNQAENRRLHELRIARLRQEER R E L N R R 2 1 2 0 0 1 2 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 11 0 1360.6194 Q9BYN8 Q9BYN8 104 114 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 1.2206E-13 180.44 By MS/MS 7 0 1 1 13606000 0 0 13606000 3000 1938 3123 12454 10168 10168 1 0 0 2414400 ELMTHHVHTYGLIMGGSNR SPTRELAMQTFGVLKELMTHHVHTYGLIMG HHVHTYGLIMGGSNRSAEAQKLGNGINIIV K E L N R S 0 1 1 0 0 0 1 3 3 1 2 0 2 0 0 1 2 0 1 1 0 0 19 0 2152.0306 Q9NVP1 Q9NVP1 273 291 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3;4 9.3961E-53 227.06 By matching By MS/MS By MS/MS 3.2 0.4 4 1 1 1 3 51642000 1412200 20308000 29922000 3001 2069 3124 12455;12456;12457;12458;12459 10169;10170;10171 10170 3 1629400 8657400 5529300 ELNEALELK FTLQIRGRERFEMFRELNEALELKDAQAGK RFEMFRELNEALELKDAQAGKEPGGSRAHS R E L L K D 1 0 1 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1057.5655 P04637 P04637 343 351 TP53 Cellular tumor antigen p53 yes yes 2 0.0054114 96.311 By MS/MS 4 0.816 1 1 1 3 140380000 0 0 140380000 3002 416 3125 12460;12461;12462 10172;10173;10174 10173 3 0 0 21033000 ELNEDKLEK NATYCRLAQFIGNRRELNEDKLEKLEELTM FIGNRRELNEDKLEKLEELTMDGAKAKAIL R E L E K L 0 0 1 1 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1116.5663 O00567 O00567 222 230 NOP56 Nucleolar protein 56 yes yes 2 2.092E-31 204.62 By MS/MS 3 0 1 1 27884000 0 0 27884000 3003 130 3126 12463 10175 10175 1 0 0 5408200 ELNITAAK LLELEMNSDLKAQLRELNITAAKEIEVGGG DLKAQLRELNITAAKEIEVGGGRKAIIIFV R E L A K E 2 0 1 0 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 858.48108 P62081 P62081 42 49 RPS7 40S ribosomal protein S7 yes yes 2 0.030694 77.741 By matching By MS/MS 7 0 2 1 1 171820000 0 64855000 106970000 3004 1005 3127 12464;12465 10176 10176 1 0 37240000 18981000 ELNIVLPEFEK VHIWCPEGMKTSDIKELNIVLPEFEKTHLE SDIKELNIVLPEFEKTHLEHQQRIESKVCK K E L E K T 0 0 1 0 0 0 3 0 0 1 2 1 0 1 1 0 0 0 0 1 0 0 11 0 1329.718 Q71F23 Q71F23 250 260 CENPU Centromere protein U yes yes 2 0.010195 90.827 By MS/MS 4 0 1 1 3727400 0 0 3727400 3005 1513 3128 12466 10177 10177 1 0 0 608800 ELNQVMEQLGDAR EEVEMAKRRIDEINKELNQVMEQLGDARID NKELNQVMEQLGDARIDRQESSRQQRKAEI K E L A R I 1 1 1 1 0 2 2 1 0 0 2 0 1 0 0 0 0 0 0 1 0 0 13 0 1501.7195 Q14683 Q14683 476 488 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 1.4952E-05 162.26 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 77984000 0 9016100 68968000 3006 1312 3129 12467;12468;12469;12470 10178;10179;10180 10179 3 0 4153900 15320000 ELNSTYSEQDPLLK KVKPYLPMIIAPLFRELNSTYSEQDPLLKN RELNSTYSEQDPLLKNLSQEIIELLKKLVG R E L L K N 0 0 1 1 0 1 2 0 0 0 3 1 0 0 1 2 1 0 1 0 0 0 14 0 1635.7992 O75691 O75691 2677 2690 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00052779 119.27 By MS/MS 1 0 1 1 2850300 0 2850300 0 3007 280 3130 12471 10181 10181 1 0 1393200 0 ELPAAVAPAGPASLAR ALGLSGGSLVSMLARELPAAVAPAGPASLA LPAAVAPAGPASLARWTLGFCDERLVPFDH R E L A R W 6 1 0 0 0 0 1 1 0 0 2 0 0 0 3 1 0 0 0 1 0 0 16 0 1489.8253 O95336 O95336 57 72 PGLS 6-phosphogluconolactonase yes yes 2 0.035401 62.694 By MS/MS By matching 7 0 2 1 1 5005200 0 2446000 2559200 3008 319 3131 12472;12473 10182 10182 0 0 1404500 454110 ELPEQLQEHAIEDK ESLSDSRELVEGEMKELPEQLQEHAIEDKE KELPEQLQEHAIEDKETINNLDTSSSDFTI K E L D K E 1 0 0 1 0 2 4 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 14 0 1677.821 Q15424 Q15424 173 186 SAFB Scaffold attachment factor B1 yes yes 2;3 3.5318E-05 161.19 By MS/MS 1.67 0.471 1 2 3 55555000 0 0 55555000 3009 1364 3132 12474;12475;12476 10183;10184 10184 2 0 0 12480000 ELPEYYELIR GRQLSEVFIQLPSRKELPEYYELIRKPVDF LPSRKELPEYYELIRKPVDFKKIKERIRNH K E L I R K 0 1 0 0 0 0 3 0 0 1 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1323.6711 P51531;P51532 P51532 1493 1502 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2 0.00022299 141.23 By MS/MS 1 0 1 1 15942000 0 0 15942000 3010 894;893 3133 12477 10185 10185 1 0 0 3434900 ELPQFATGENLPR LCEDEDVSIRRQAIKELPQFATGENLPRVA IKELPQFATGENLPRVADILTQLLQTDDSA K E L P R V 1 1 1 0 0 1 2 1 0 0 2 0 0 1 2 0 1 0 0 0 0 0 13 0 1470.7467 Q9BZZ5 Q9BZZ5 85 97 API5 Apoptosis inhibitor 5 yes yes 2 4.0723E-12 162.34 By MS/MS By MS/MS 4.17 1.46 1 1 2 2 2 4 102700000 0 23277000 79420000 3011 1947 3134 12478;12479;12480;12481;12482;12483 10186;10187;10188;10189 10187 4 0 7724900 14516000 ELPTAFDYVEFTR YCVSHMKPYVDGKGRELPTAFDYVEFTRSL GRELPTAFDYVEFTRSLFVN__________ R E L T R S 1 1 0 1 0 0 2 0 0 0 1 0 0 2 1 0 2 0 1 1 0 0 13 0 1586.7617 Q13813 Q13813 2455 2467 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0032338 105.32 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 42122000 0 9038000 33084000 3012 1268 3135 12484;12485;12486 10190;10191;10192 10190 3 0 4417700 7219800 ELPTVVFR VPKENLESWLNYLKKELPTVVFRASTKPKD WLNYLKKELPTVVFRASTKPKDKGKITKRV K E L F R A 0 1 0 0 0 0 1 0 0 0 1 0 0 1 1 0 1 0 0 2 0 0 8 0 959.54402 Q9BVP2 Q9BVP2 198 205 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.007276 97.068 By MS/MS By MS/MS 4.2 1.17 2 1 1 1 2 3 67897000 0 39774000 28123000 3013 1917 3136 12487;12488;12489;12490;12491 10193;10194;10195 10195 3 0 15326000 5262000 ELQALGFQPGPITDTTR ______________________________ QALGFQPGPITDTTRDVYRNKLRRLRGEAR R E L T R D 1 1 0 1 0 2 1 2 0 1 2 0 0 1 2 0 3 0 0 0 0 0 17 0 1842.9476 Q8NC56 Q8NC56 12 28 LEMD2 LEM domain-containing protein 2 yes yes 2 6.1409E-37 213.18 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 53640000 0 15756000 37884000 3014 1631 3137 12492;12493;12494;12495 10196;10197;10198;10199 10196 4 0 5521500 6187700 ELQAQIAELQEDFESEK DDETLHKNNALKVVRELQAQIAELQEDFES QAQIAELQEDFESEKASRNKAEKQKRDLSE R E L E K A 2 0 0 1 0 3 5 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 17 0 2005.948 P35580 P35580 1115 1131 MYH10 Myosin-10 yes yes 2 2.3981E-76 247.88 By MS/MS 1 0 1 1 9643600 0 0 9643600 3015 753 3138 12496 10200 10200 1 0 0 2077900 ELQEAAAVPTTPR EPVEQPRVTRKRLERELQEAAAVPTTPRRG ERELQEAAAVPTTPRRGRPPKTRRRADEEE R E L P R R 3 1 0 0 0 1 2 0 0 0 1 0 0 0 2 0 2 0 0 1 0 0 13 0 1381.7201 Q96T58 Q96T58 1937 1949 SPEN Msx2-interacting protein yes yes 2 0.0013923 73.848 By MS/MS 1 0 1 1 0 0 0 0 3016 1839 3139 12497 10201 10201 1 0 0 0 ELQEAQNER EIFQKKLDETTRLLRELQEAQNERLSTRPP TTRLLRELQEAQNERLSTRPPPNMICLLGP R E L E R L 1 1 1 0 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 1115.5207 Q9NPI1 Q9NPI1 555 563 BRD7 Bromodomain-containing protein 7 yes yes 2 0.00069791 130.27 By MS/MS 3 0 1 1 2187400 0 0 2187400 3017 2029 3140 12498 10202 10202 1 0 0 424260 ELQELNELFKPVVAAQK QSEAEKKLKKDDKKKELQELNELFKPVVAA QELNELFKPVVAAQKISKGADPKSVVCAFF K E L Q K I 2 0 1 0 0 2 3 0 0 0 3 2 0 1 1 0 0 0 0 2 0 0 17 1 1955.0728 Q8WU90 Q8WU90 77 93 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 3 0.0053435 60.489 By MS/MS 5.5 1.71 1 1 1 1 1 1 6 32768000 0 0 32768000 3018 1671 3141 12499;12500;12501;12502;12503;12504 10203;10204 10204 2 0 0 5423400 ELQENQDEIENMMNAIFK KRANERLELLLQKRKELQENQDEIENMMNA ENQDEIENMMNAIFKGVFVHRYRDAIAEIR K E L F K G 1 0 3 1 0 2 4 0 0 2 1 1 2 1 0 0 0 0 0 0 0 0 18 0 2194.9875 Q8N3U4 Q8N3U4 273 290 STAG2 Cohesin subunit SA-2 yes yes 2;3 4.1939E-40 209.64 By MS/MS 1.5 0.5 2 2 4 8844300 0 0 8844300 3019 1603 3142 12505;12506;12507;12508 10205;10206 10205 2 0 0 1981100 ELQLEKHK YNDDLIHFSNSENCKELQLEKHKGEILGVV SNSENCKELQLEKHKGEILGVVVVESGWGS K E L H K G 0 0 0 0 0 1 2 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 8 1 1023.5713 Q99767 Q99767 568 575 APBA2 Amyloid beta A4 precursor protein-binding family A member 2 yes yes 2 0.0015886 139.31 By MS/MS 2.5 0.5 1 1 2 28329000 28329000 0 0 3020 1864 3143 12509;12510 10207 10207 1 32944000 0 0 ELQNEVEK KARVREMEEEAEKLKELQNEVEKQMNMSPP EEAEKLKELQNEVEKQMNMSPPPGNAGPVI K E L E K Q 0 0 1 0 0 1 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 8 0 987.48729 Q86U42 Q86U42 138 145 PABPN1 Polyadenylate-binding protein 2 yes yes 2 0.0009928 121.99 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 19567000 0 9746800 9819900 3021 1544 3144 12511;12512;12513;12514;12515 10208;10209;10210 10208 3 0 2624300 1587400 ELQNHSGLSIPVPR FIWDLISPAENGKTKELQNHSGLSIPVPRG KELQNHSGLSIPVPRGRKGKKVKSQSTFDI K E L P R G 0 1 1 0 0 1 1 1 1 1 2 0 0 0 2 2 0 0 0 1 0 0 14 0 1545.8263 Q9HCK8 Q9HCK8 1518 1531 CHD8 Chromodomain-helicase-DNA-binding protein 8 yes yes 3 0.037581 46.276 By MS/MS 1 0 1 1 3896400 0 0 3896400 3022 2013 3145 12516 10211 10211 1 0 0 839530 ELQQLLFSVPPGYLR LSRPVYSKKGLEHKKELQQLLFSVPPGYLR ELQQLLFSVPPGYLRYTPESLWRDLISEHR K E L L R Y 0 1 0 0 0 2 1 1 0 0 4 0 0 1 2 1 0 0 1 1 0 0 15 0 1758.9669 Q7Z7L1 Q7Z7L1 392 406 SLFN11 Schlafen family member 11 yes yes 2;3 0.001683 93.258 By MS/MS 2 0 2 2 3561600 0 3561600 0 3023 1539 3146 12517;12518 10212;10213 10212 2 0 1603800 0 ELQQPQDSLQLSLGNALFTKPR GSEEELHSASQRLLRELQQPQDSLQLSLGN SLQLSLGNALFTKPRLPIQEAFLGAMRTLY R E L P R L 1 1 1 1 0 4 1 1 0 0 5 1 0 1 2 2 1 0 0 0 0 0 22 1 2482.318 CON__Q9N2I2 CON__Q9N2I2 113 134 yes yes 3 1.8481E-14 114.63 By MS/MS 3 0 1 1 5833600 0 0 5833600 + 3024 98 3147 12519 10214 10214 1 0 0 1131400 ELQSMADQEK SLLINAVEASCIRTRELQSMADQEKISPAA CIRTRELQSMADQEKISPAALKKTLLDRVK R E L E K I 1 0 0 1 0 2 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 10 0 1177.5285 Q96C36 Q96C36 267 276 PYCR2 Pyrroline-5-carboxylate reductase 2 yes yes 2 0.0018853 107.57 By MS/MS By matching 6 0 2 1 1 15172000 0 2857500 12314000 3025 1758 3148 12520;12521 10215 10215 1 0 989160 1842400 ELQSQIQEAR GYRVATFHDCEDAARELQSQIQEARADLAR EDAARELQSQIQEARADLARRGLRF_____ R E L A R A 1 1 0 0 0 3 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1200.6099 Q9P2X0 Q9P2X0 73 82 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 yes yes 2 2.4012E-11 172.21 By MS/MS 10 0 1 1 5158100 0 0 5158100 3026 2128 3149 12522 10216 10216 1 0 0 11281000 ELQSQISDTSVVLSMDNSR DEINFLRQLYEEEIRELQSQISDTSVVLSM QISDTSVVLSMDNSRSLDMDSIIAEVKAQY R E L S R S 0 1 1 2 0 2 1 0 0 1 2 0 1 0 0 5 1 0 0 2 0 0 19 0 2108.0056 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 234 252 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 0 352.53 By matching By MS/MS By MS/MS 4.06 1.22 1 1 2 8 4 2 1 4 13 539090000 957410 68820000 469310000 + 3027 49 3150;3151 12523;12524;12525;12526;12527;12528;12529;12530;12531;12532;12533;12534;12535;12536;12537;12538;12539;12540 10217;10218;10219;10220;10221;10222;10223;10224;10225;10226;10227;10228;10229;10230;10231;10232;10233;10234;10235;10236;10237;10238;10239 10224 26 23 746940 22495000 77918000 ELQTQYDALKK DAETAERLRAEKEMKELQTQYDALKKQMEV KEMKELQTQYDALKKQMEVMEMEVMEARLI K E L K K Q 1 0 0 1 0 2 1 0 0 0 2 2 0 0 0 0 1 0 1 0 0 0 11 1 1335.7034 Q92614 Q92614 1328 1338 MYO18A Unconventional myosin-XVIIIa yes yes 2 0.0098881 99.688 By MS/MS 1 0 1 1 2742300 0 2742300 0 3028 1710 3152 12541 10240 10240 1 0 1340400 0 ELRDEEQTAESIK LACCVAPTNPRFGGKELRDEEQTAESIKNQ GKELRDEEQTAESIKNQMTVKEWEKVFEMS K E L I K N 1 1 0 1 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 13 1 1546.7475 Q14566 Q14566 314 326 MCM6 DNA replication licensing factor MCM6 yes yes 3 0.002877 85.536 By matching By MS/MS 1.5 0.5 1 1 1 1 23307000 0 1820800 21486000 3029 1305 3153 12542;12543 10241 10241 1 0 890000 4855400 ELSAALQDKK KATQEWLEKQAQLEKELSAALQDKKCLEEK AQLEKELSAALQDKKCLEEKNEILQGKLSQ K E L K K C 2 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 10 1 1101.603 Q14980 Q14980 365 374 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0018746 110.41 By MS/MS By MS/MS 1 0 2 1 1 7311500 0 3501200 3810300 3030 1327 3154 12544;12545 10242;10243 10242 2 0 1711300 821000 ELSDFISYLQR PANKKLNPKKYEGGRELSDFISYLQREATN EGGRELSDFISYLQREATNPPVIQEEKPKK R E L Q R E 0 1 0 1 0 1 1 0 0 1 2 0 0 1 0 2 0 0 1 0 0 0 11 0 1369.6878 P30101 P30101 472 482 PDIA3 Protein disulfide-isomerase A3 yes yes 2 3.2887E-223 268 By MS/MS 4 0 1 1 0 0 0 0 3031 711 3155 12546 10244 10244 1 0 0 0 ELSDLESAR SRLLDTIGISQPQWRELSDLESARQFCQTV SQPQWRELSDLESARQFCQTVGYPCVVRPS R E L A R Q 1 1 0 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1018.4931 P27708 P27708 1067 1075 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.00046714 123.98 By MS/MS 1 0 1 1 10596000 0 10596000 0 3032 681 3156 12547 10245 10245 1 0 5179200 0 ELSEQIQR LRLQDYEEKTKKAERELSEQIQRALQLEEE KTKKAERELSEQIQRALQLEEERKRAQEEA R E L Q R A 0 1 0 0 0 2 2 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 8 0 1001.5142 P15311 P15311 364 371 EZR Ezrin yes yes 2 9.6386E-09 164.53 By matching By MS/MS 2.5 0.5 1 1 1 1 17890000 4885600 0 13004000 3033 569 3157 12548;12549 10246 10246 1 5886600 0 2522200 ELSEQLGQAER RLSVEDAVKVGLVGRELSEQLGQAERAAAG LVGRELSEQLGQAERAAAGYPDPYSRASLS R E L E R A 1 1 0 0 0 2 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1258.6153 P58107 P58107 1312 1322 EPPK1 Epiplakin yes yes 2 0.00032804 128.27 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 44560000 7925800 27622000 9012500 3034 958 3158 12550;12551;12552;12553 10247;10248 10247 2 7925800 13107000 1941900 ELSFVLDYINQSPK SVKLPKSSSQEVEAKELSFVLDYINQSPKC KELSFVLDYINQSPKCIAFGNEGVYVAAVR K E L P K C 0 0 1 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 1 1 0 0 14 0 1651.8457 Q8IWA0 Q8IWA0 146 159 WDR75 WD repeat-containing protein 75 yes yes 2 0.0096232 81.625 By MS/MS 2 0 1 1 1508000 0 1508000 0 3035 1574 3159 12554 10249 10249 1 0 679060 0 ELSLAGNELGDEGAR CGDLCRVLRAKESLKELSLAGNELGDEGAR ELSLAGNELGDEGARLLCETLLEPGCQLES K E L A R L 2 1 1 1 0 0 3 3 0 0 3 0 0 0 0 1 0 0 0 0 0 0 15 0 1529.7322 P13489 P13489 288 302 RNH1 Ribonuclease inhibitor yes yes 2 1.5782E-34 211.64 By MS/MS 5 0 1 1 7790000 0 0 7790000 3036 546 3160 12555 10250 10250 1 0 0 1086600 ELSLPIYTIFMK LTARNVLHGLAGGIKELSLPIYTIFMKSYF GIKELSLPIYTIFMKSYFFKDNVFLSLTDR K E L M K S 0 0 0 0 0 0 1 0 0 2 2 1 1 1 1 1 1 0 1 0 0 0 12 0 1453.7891 Q6TQR6;Q66431 Q6TQR6 2943 2954 yes no 2 0.0048331 103.56 By MS/MS By MS/MS By MS/MS 3.7 1.55 1 2 1 2 3 1 5 3 2 309900000 147660000 33183000 129060000 3037 1464 3161 12556;12557;12558;12559;12560;12561;12562;12563;12564;12565 10251;10252;10253;10254;10255;10256 10253 5 137970000 11996000 18989000 ELSLTPITGAKPSATGYLGSVAAK GRPGKPGAGPAQVPRELSLTPITGAKPSAT AKPSATGYLGSVAAKRPLQEDRLLPAEVKA R E L A K R 4 0 0 0 0 0 1 3 0 1 3 2 0 0 2 3 3 0 1 1 0 0 24 1 2331.2686 O95785 O95785 1333 1356 WIZ Protein Wiz yes yes 3 4.8104E-06 77.641 By MS/MS 2 0 1 1 6697500 0 6697500 0 3038 340 3162 12566 10257 10257 1 0 3016000 0 ELSPAALEK LHEKIQEARGQGSAKELSPAALEKRRRRKQ GQGSAKELSPAALEKRRRRKQERDRKKRKR K E L E K R 2 0 0 0 0 0 2 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 9 0 956.51786 O75683 O75683 136 144 SURF6 Surfeit locus protein 6 yes yes 2 0.033118 78.192 By MS/MS 5 0 1 1 0 0 0 0 3039 279 3163 12567 10258 10258 1 0 0 0 ELSPDIAHLASLK LPLLSELAAADNCLRELSPDIAHLASLKTL LRELSPDIAHLASLKTLDLSNNQLSEIPAE R E L L K T 2 0 0 1 0 0 1 0 1 1 3 1 0 0 1 2 0 0 0 0 0 0 13 0 1392.7613 Q8N1G4 Q8N1G4 193 205 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 0.038992 67.153 By matching By MS/MS 3 0 3 1 2 30729000 1171100 0 29557000 3040 1600 3164 12568;12569;12570 10259;10260 10260 2 1351200 0 5732700 ELSPLFLR RALTKFPERVEPRSRELSPLFLRFINNEYY RVEPRSRELSPLFLRFINNEYYPADLQVAP R E L L R F 0 1 0 0 0 0 1 0 0 0 3 0 0 1 1 1 0 0 0 0 0 0 8 0 973.55967 O75691 O75691 841 848 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00053987 128.48 By MS/MS By MS/MS 1 0 2 1 1 10520000 0 5692200 4828100 3041 280 3165 12571;12572 10261;10262 10261 2 0 2782300 1040300 ELSSTEAQLHDAQELLQEETR GALNEAESKTIRLSKELSSTEAQLHDAQEL AQLHDAQELLQEETRAKLALGSRVRAMEAE K E L T R A 2 1 0 1 0 3 5 0 1 0 4 0 0 0 0 2 2 0 0 0 0 0 21 0 2426.1561 Q7Z406 Q7Z406 1326 1346 MYH14 Myosin-14 yes yes 3 1.9111E-11 114.55 By MS/MS 1 0 1 1 5140000 0 5140000 0 3042 1531 3166 12573 10263 10263 1 0 2512300 0 ELSVEEQIKR QKSQDVELWEGEVVKELSVEEQIKRNRYYD GEVVKELSVEEQIKRNRYYDEDEDEE____ K E L K R N 0 1 0 0 0 1 3 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 10 1 1229.6616 Q9UHB6 Q9UHB6 739 748 LIMA1 LIM domain and actin-binding protein 1 yes yes 2;3 0.0011215 132.76 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 18384000 0 5948400 12435000 3043 2150 3167 12574;12575;12576 10264;10265 10265 1 0 2658700 2810100 ELTAPDENIPAK FRTYNASITLQQQLKELTAPDENIPAKILS QLKELTAPDENIPAKILSYNRANRAVAILC K E L A K I 2 0 1 1 0 0 2 0 0 1 1 1 0 0 2 0 1 0 0 0 0 0 12 0 1296.6561 P11387 P11387 604 615 TOP1 DNA topoisomerase 1 yes yes 2 0.0036484 106.2 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 167300000 0 29193000 138110000 3044 523 3168 12577;12578;12579;12580;12581 10266;10267;10268;10269 10268 4 0 13300000 28923000 ELTAVVQK TRTQNVLGEKGRRIRELTAVVQKRFGFPEG EKGRRIRELTAVVQKRFGFPEGSVELYAEK R E L Q K R 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 8 0 886.51238 P23396 P23396 68 75 RPS3 40S ribosomal protein S3 yes yes 2 0.021203 83.377 By MS/MS By MS/MS 6 0 2 1 1 69759000 0 19813000 49946000 3045 641 3169 12582;12583 10270;10271 10271 2 0 6858700 7472400 ELTAVVQKR TRTQNVLGEKGRRIRELTAVVQKRFGFPEG KGRRIRELTAVVQKRFGFPEGSVELYAEKV R E L K R F 1 1 0 0 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 1 1042.6135 P23396 P23396 68 76 RPS3 40S ribosomal protein S3 yes yes 2 8.6291E-11 167.24 By MS/MS 6 0 1 1 10500000 0 10500000 0 3046 641 3170 12584 10272 10272 1 0 3634600 0 ELTDEEAER LAKEAKSETSGPQIKELTDEEAERLQLEID SGPQIKELTDEEAERLQLEIDQKKDAENHE K E L E R L 1 1 0 1 0 0 4 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 0 1090.4778 Q9Y266 Q9Y266 106 114 NUDC Nuclear migration protein nudC yes yes 2 0.023519 79.906 By MS/MS 5 0 1 1 3050900 0 0 3050900 3047 2235 3171 12585 10273 10273 1 0 0 425550 ELTGDMQLSK DYFSRRLEPLGIIVKELTGDMQLSKSEILR GIIVKELTGDMQLSKSEILRTQMLVTTPEK K E L S K S 0 0 0 1 0 1 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 10 0 1120.5434 Q8N3C0 Q8N3C0 563 572 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0029077 104.01 By MS/MS 1 0 1 1 7649600 0 7649600 0 3048 1602 3172 12586 10274 10274 1 0 3739000 0 ELTMASLPFTFDVER FIFLRLNVLREYLERELTMASLPFTFDVER ELTMASLPFTFDVERSIDDWVFMCFFVGND R E L E R S 1 1 0 1 0 0 2 0 0 0 2 0 1 2 1 1 2 0 0 1 0 0 15 0 1754.8549 Q9H0D6 Q9H0D6 316 330 XRN2 5-3 exoribonuclease 2 yes yes 2 1.64E-07 169.65 By MS/MS 2 0 1 1 1075500 0 0 1075500 3049 1960 3173 12587 10275 10275 1 0 0 243050 ELTPLQAMMLR ADMPGKSRKKKKNMKELTPLQAMMLRMAGQ KNMKELTPLQAMMLRMAGQEIPEEGREVEE K E L L R M 1 1 0 0 0 1 1 0 0 0 3 0 2 0 1 0 1 0 0 0 0 0 11 0 1301.6836 Q9Y2W2 Q9Y2W2 326 336 WBP11 WW domain-binding protein 11 yes yes 2 0.00017989 137.9 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 12556000 0 6845600 5710100 3050 2253 3174 12588;12589;12590 10276;10277 10277 2 0 3020600 1107500 ELTTEIDNNIEQISSYK QNRKDAEAWFNEKSKELTTEIDNNIEQISS TTEIDNNIEQISSYKSEITELRRNVQALEI K E L Y K S 0 0 2 1 0 1 3 0 0 3 1 1 0 0 0 2 2 0 1 0 0 0 17 0 1995.9637 P13645;CON__P13645 P13645 346 362 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 0 361.82 By MS/MS By MS/MS By MS/MS 5.05 2.85 8 6 8 6 8 5 5 5 5 5 27 7 27 5347000000 2931000000 115160000 2300900000 + 3051 56 3175 12591;12592;12593;12594;12595;12596;12597;12598;12599;12600;12601;12602;12603;12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618;12619;12620;12621;12622;12623;12624;12625;12626;12627;12628;12629;12630;12631;12632;12633;12634;12635;12636;12637;12638;12639;12640;12641;12642;12643;12644;12645;12646;12647;12648;12649;12650;12651 10278;10279;10280;10281;10282;10283;10284;10285;10286;10287;10288;10289;10290;10291;10292;10293;10294;10295;10296;10297;10298;10299;10300;10301;10302;10303;10304;10305;10306;10307;10308;10309;10310;10311;10312;10313;10314;10315;10316;10317;10318;10319;10320;10321;10322;10323;10324;10325;10326;10327;10328;10329;10330;10331;10332;10333;10334;10335;10336;10337;10338;10339;10340;10341;10342;10343;10344;10345;10346;10347;10348 10280 71 2492800000 60593000 488690000 ELTTEIDNNIEQISSYKSEITELRR QNRKDAEAWFNEKSKELTTEIDNNIEQISS EQISSYKSEITELRRNVQALEIELQSQLAL K E L R R N 0 2 2 1 0 1 5 0 0 4 2 1 0 0 0 3 3 0 1 0 0 0 25 2 2980.4989 P13645;CON__P13645 P13645 346 370 KRT10 Keratin, type I cytoskeletal 10 yes no 4 0.00078883 51.234 By MS/MS 4.5 0.5 1 1 2 12148000 12148000 0 0 + 3052 56 3176 12652;12653 10349 10349 1 9576300 0 0 ELTVDNSFEFEK RKVRWTKAFRKAAGKELTVDNSFEFEKRRN AGKELTVDNSFEFEKRRNEPIKYQRELWNK K E L E K R 0 0 1 1 0 0 3 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 12 0 1456.6722 Q9UHA3 Q9UHA3 62 73 RSL24D1 Probable ribosome biogenesis protein RLP24 yes yes 2 5.2292E-05 145.89 By MS/MS 7 0 1 1 22948000 0 0 22948000 3053 2149 3177 12654 10350 10350 1 0 0 4071900 ELVFKEDGQEYAQVIK KNRRRGKNENESEKRELVFKEDGQEYAQVI LVFKEDGQEYAQVIKMLGNGRLEAMCFDGV R E L I K M 1 0 0 1 0 2 3 1 0 1 1 2 0 1 0 0 0 0 1 2 0 0 16 1 1894.9676 P47813;O14602 P47813 25 40 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2;3 5.3681E-12 181.98 By MS/MS By MS/MS 8 0 3 1 2 86521000 0 4704500 81817000 3054 138 3178 12655;12656;12657 10351;10352;10353;10354;10355 10355 5 0 2140400 12543000 ELVGPPLAETVFTPK AKKCVSCQNLNPSNKELVGPPLAETVFTPK ELVGPPLAETVFTPKTSPENVQDRFALVTP K E L P K T 1 0 0 0 0 0 2 1 0 0 2 1 0 1 3 0 2 0 0 2 0 0 15 0 1596.8763 P49792 P49792 1384 1398 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.00035372 117.98 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 31776000 0 10561000 21215000 3055 871 3179 12658;12659;12660 10356;10357 10357 2 0 5162100 4645800 ELVLALYDYQEK SCRQQVAPTDDETGKELVLALYDYQEKSPR TGKELVLALYDYQEKSPREVTMKKGDILTL K E L E K S 1 0 0 1 0 1 2 0 0 0 3 1 0 0 0 0 0 0 2 1 0 0 12 0 1482.7606 Q13813 Q13813 970 981 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.02919 78.655 By MS/MS 1 0 1 1 1274300 0 1274300 0 3056 1268 3180 12661 10358 10358 1 0 622850 0 ELVLNTEGINLPELFK TRCLLNETTNNKNEKELVLNTEGINLPELF LVLNTEGINLPELFKYAEVLDLRRLYSNDI K E L F K Y 0 0 2 0 0 0 3 1 0 1 4 1 0 1 1 0 1 0 0 1 0 0 16 0 1827.9982 O95602 O95602 1575 1590 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 3.2969E-05 131.17 By MS/MS 1 0 1 1 5927400 0 0 5927400 3057 330 3181 12662 10359 10359 1 0 0 1277100 ELVSLKQEQQAFK STLQTMESDIYTEVRELVSLKQEQQAFKEA VRELVSLKQEQQAFKEAADTERLALQALTE R E L F K E 1 0 0 0 0 3 2 0 0 0 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1546.8355 Q07065 Q07065 327 339 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.0024166 138.22 By MS/MS 3 0 1 1 2424000 0 2424000 0 3058 1176 3182 12663 10360 10360 1 0 1033400 0 ELVSSSSSGSDSDSEVDKK ______________________________ SSSSGSDSDSEVDKKLKRKKQVAPEKPVKK K E L K K L 0 0 0 3 0 0 2 1 0 0 1 2 0 0 0 8 0 0 0 2 0 0 19 1 1941.8651 P53999 P53999 6 24 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 3 0.0064873 50.957 By MS/MS 8 0 1 1 2986900 0 0 2986900 3059 926 3183 12664 10361 10361 1 0 0 457910 ELVVTQLGYDTR AIDTQNKPITSEKIKELVVTQLGYDTRVTI KIKELVVTQLGYDTRVTILGHVQRGGTPSA K E L T R V 0 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 2 0 0 12 0 1392.7249 Q01813 Q01813 290 301 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 0.0015479 112.04 By MS/MS 3 0 1 1 10891000 0 0 10891000 3060 1139 3184 12665 10362 10362 1 0 0 2112300 ELVYPPDYNPEGK EAMNKRLGSLVDEFKELVYPPDYNPEGKVT FKELVYPPDYNPEGKVTKRKHDNEGSGSKR K E L G K V 0 0 1 1 0 0 2 1 0 0 1 1 0 0 3 0 0 0 2 1 0 0 13 0 1519.7195 P12956 P12956 527 539 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 5.3692E-05 157.78 By MS/MS 3 0 2 2 57181000 0 0 57181000 3061 541 3185 12666;12667 10363;10364;10365;10366 10363 3 0 0 11090000 ELYAGMPTIQITALEK PKSLDIFIKAVHTTKELYAGMPTIQITALE LYAGMPTIQITALEKITKPFFAAISDEKVQ K E L E K I 2 0 0 0 0 1 2 1 0 2 2 1 1 0 1 0 2 0 1 0 0 0 16 0 1776.9332 Q9H583 Q9H583 1094 1109 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 5.1852E-05 111.79 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 20204000 0 3635900 16568000 3062 1984 3186 12668;12669;12670 10367;10368 10367 2 0 1777200 3606700 ELYDKGGEQAIK QISQAYEVLSDAKKRELYDKGGEQAIKEGG KKRELYDKGGEQAIKEGGAGGGFGSPMDIF R E L I K E 1 0 0 1 0 1 2 2 0 1 1 2 0 0 0 0 0 0 1 0 0 0 12 1 1349.6827 P31689 P31689 62 73 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 0.045333 52.071 By MS/MS 5 0 1 1 5136200 0 5136200 0 3063 720 3187 12671 10369 10369 1 0 1324000 0 ELYERPPHLFAIADAAYK LNIYGRDTIEQYKGRELYERPPHLFAIADA ERPPHLFAIADAAYKAMKRRSKDTCIVISG R E L Y K A 4 1 0 1 0 0 2 0 1 1 2 1 0 1 2 0 0 0 2 0 0 0 18 1 2103.0789 O94832 O94832 70 87 MYO1D Unconventional myosin-Id yes yes 3;4 5.734E-09 141.22 By MS/MS 1.67 0.471 1 2 3 22627000 0 0 22627000 3064 299 3188 12672;12673;12674 10370;10371 10370 2 0 0 5082100 ELYIQHAK KTVKENWKNLSDSEKELYIQHAKEDETRYH NLSDSEKELYIQHAKEDETRYHNEMKSWEE K E L A K E 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 1 0 0 0 8 0 1000.5342 Q00059 Q00059 198 205 TFAM Transcription factor A, mitochondrial yes yes 2 0.02971 77.984 By MS/MS 7 0 1 1 44353000 0 0 44353000 3065 1120 3189 12675 10372 10372 1 0 0 7870200 ELYPVEFR IPITLFMDLQAVLPRELYPVEFRNLLKWYA LQAVLPRELYPVEFRNLLKWYAKEFKDPLL R E L F R N 0 1 0 0 0 0 2 0 0 0 1 0 0 1 1 0 0 0 1 1 0 0 8 0 1051.5338 Q5BJF2 Q5BJF2 37 44 TMEM97 Transmembrane protein 97 yes yes 2 0.0036394 104.37 By MS/MS 7.5 0.5 1 1 2 5396700 0 0 5396700 3066 1432 3190 12676;12677 10373 10373 1 0 0 861360 ELYQQLQR LVPAAELLESRVIDRELYQQLQRGERSVRD ESRVIDRELYQQLQRGERSVRDVAEVDTVR R E L Q R G 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 1076.5615 Q15149 Q15149 3132 3139 PLEC Plectin yes yes 2 0.00069615 126.24 By MS/MS 1 0 1 1 10169000 0 0 10169000 3067 1348 3191 12678 10374 10374 1 0 0 2191100 ELYTLLNENYVEDDDNMFR FTWDALDLGDRGVLKELYTLLNENYVEDDD LLNENYVEDDDNMFRFDYSPEFLLWALRPP K E L F R F 0 1 3 3 0 0 3 0 0 0 3 0 1 1 0 0 1 0 2 1 0 0 19 0 2392.0529 P30419;O60551 P30419 171 189 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2 yes no 2 4.5548E-65 233.37 By MS/MS 4 0 1 1 5186000 0 0 5186000 3068 714 3192 12679 10375 10375 1 0 0 847050 EMAAASAAAISGAGR ______________________________ EMAAASAAAISGAGRCRLSKIGATRRPPPA R E M G R C 7 1 0 0 0 0 1 2 0 1 0 0 1 0 0 2 0 0 0 0 0 0 15 0 1332.6456 Q14807 Q14807 13 27 KIF22 Kinesin-like protein KIF22 yes yes 2 0.0014249 95.018 By MS/MS 3.5 0.5 1 1 2 26008000 0 0 26008000 3069 1320 3193 12680;12681 10376 10376 1 0 0 4447300 EMAAMCLGLAHSLSR IRSQMDGLIPGVEPREMAAMCLGLAHSLSR EMAAMCLGLAHSLSRYRLKFSADKVDTMIV R E M S R Y 3 1 0 0 1 0 1 1 1 0 3 0 2 0 0 2 0 0 0 0 0 0 15 0 1645.7739 Q9Y2X3 Q9Y2X3 134 148 NOP58 Nucleolar protein 58 yes yes 3 0.0059133 64.65 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 7606600 0 2767300 4839400 3070 2254 3194 12682;12683;12684 10377;10378 10377 2 0 918360 759710 EMAEIRDQMQQQLNDYEQLLDVK KEKDNSRRMLTDKEREMAEIRDQMQQQLND MQQQLNDYEQLLDVKLALDMEISAYRKLLE R E M V K L 1 1 1 3 0 5 3 0 0 1 3 1 2 0 0 0 0 0 1 1 0 0 23 1 2836.3371 P20700 P20700 345 367 LMNB1 Lamin-B1 yes yes 3 2.7836E-12 109.85 By MS/MS 2 0.816 1 1 1 3 20657000 0 0 20657000 3071 619 3195 12685;12686;12687 10379;10380;10381 10381 3 0 0 4098400 EMDLVGLGLHPLFSSR RSRPAPSPESIKRAKEMDLVGLGLHPLFSS MDLVGLGLHPLFSSRFEEEELQRLRLVDSI K E M S R F 0 1 0 1 0 0 1 2 1 0 4 0 1 1 1 2 0 0 0 1 0 0 16 0 1769.9134 Q8TDD1 Q8TDD1 536 551 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.0010604 78.69 By MS/MS 1.5 0.5 1 1 2 10464000 0 0 10464000 3072 1661 3196 12688;12689 10382 10382 1 0 0 2354800 EMDNFLAQMEAK SLKAAIQSRQKDRQKEMDNFLAQMEAKYCK RQKEMDNFLAQMEAKYCKSSKGGGKKSALK K E M A K Y 2 0 1 1 0 1 2 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 12 0 1425.6268 Q8WXX5 Q8WXX5 230 241 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.024098 82.029 By MS/MS 6 0 1 1 11918000 0 0 11918000 3073 1698 3197 12690 10383 10383 1 0 0 1783100 EMEAELEDER EQSEEKKKQLVRQVREMEAELEDERKQRSM VRQVREMEAELEDERKQRSMAVAARKKLEM R E M E R K 1 1 0 1 0 0 5 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1249.5132 P35579 P35579 1593 1602 MYH9 Myosin-9 yes yes 2 9.6166E-05 146.69 By MS/MS By MS/MS 1 0 2 1 1 34049000 0 18558000 15491000 3074 752 3198 12691;12692 10384;10385 10384 2 0 9070800 3337900 EMEAELEDERK EQSEEKKKQLVRQVREMEAELEDERKQRSM RQVREMEAELEDERKQRSMAVAARKKLEMD R E M R K Q 1 1 0 1 0 0 5 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1377.6082 P35579 P35579 1593 1603 MYH9 Myosin-9 yes yes 2;3 7.7255E-28 206.43 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 100790000 0 81943000 18850000 3075 752 3199 12693;12694;12695;12696;12697 10386;10387;10388 10387 3 0 39973000 4072400 EMEEEAEKLK AIEDPELEAIKARVREMEEEAEKLKELQNE KARVREMEEEAEKLKELQNEVEKQMNMSPP R E M L K E 1 0 0 0 0 0 5 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 10 1 1234.5751 Q86U42 Q86U42 128 137 PABPN1 Polyadenylate-binding protein 2 yes yes 2;3 0.048015 95.311 By MS/MS 5 0 2 2 16685000 0 0 16685000 3076 1544 3200 12698;12699 10389;10390 10390 2 0 0 2327200 EMEENFAVEAANYQDTIGR DALKGTNESLERQMREMEENFAVEAANYQD NFAVEAANYQDTIGRLQDEIQNMKEEMARH R E M G R L 3 1 2 1 0 1 4 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 19 0 2185.9586 P08670 P08670 346 364 VIM Vimentin yes yes 2;3 9.1238E-292 337.25 By matching By MS/MS By MS/MS 4.72 1.69 2 3 8 6 2 2 1 1 1 5 19 967290000 2173200 37588000 927530000 3077 476 3201;3202 12700;12701;12702;12703;12704;12705;12706;12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724 10391;10392;10393;10394;10395;10396;10397;10398;10399;10400;10401;10402;10403;10404;10405;10406;10407;10408;10409;10410;10411;10412;10413;10414;10415;10416 10414 186 25 1695400 11708000 149790000 EMEEQMR EERRRREEEMMIRQREMEEQMRRQREESYS EEMMIRQREMEEQMRRQREESYSRMGYMDP R E M M R R 0 1 0 0 0 1 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 7 0 951.379 P23246 P23246 584 590 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.013384 114.54 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 77627000 0 27064000 50563000 3078 638 3203 12725;12726;12727;12728 10417;10418;10419 10418 3 0 12132000 9793100 EMENIIATVR ATEEDPKQWLNMDEREMENIIATVRDSNLK NMDEREMENIIATVRDSNLKLTLAFGIGMH R E M V R D 1 1 1 0 0 0 2 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1174.6016 Q8N3C0 Q8N3C0 1595 1604 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00053783 128.86 By MS/MS By matching 1.5 0.5 1 1 1 1 7039000 0 4800100 2238900 3079 1602 3204 12729;12730 10420 10420 1 0 2346200 505940 EMEPLGWIHTQPNESPQLSPQDVTTHAK TVHLPGQLPQHEYLKEMEPLGWIHTQPNES ESPQLSPQDVTTHAKIMADNPSWDGEKTII K E M A K I 1 0 1 1 0 3 3 1 2 1 2 1 1 0 4 2 3 1 0 1 0 0 28 0 3169.5139 Q6P2Q9 Q6P2Q9 2171 2198 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 4 1.0328E-08 76.161 By MS/MS By matching 1.5 0.5 1 1 1 1 21408000 0 17741000 3666500 3080 1490 3205 12731;12732 10421 10421 1 0 8671700 828560 EMESNWVSLVSK WQRKNMQLTAGSKLREMESNWVSLVSKNYE KLREMESNWVSLVSKNYEIERTIVQLENEI R E M S K N 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 3 0 1 0 2 0 0 12 0 1407.6704 O75934 O75934 180 191 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.0089354 96.015 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 42528000 0 3708200 38820000 3081 290 3206 12733;12734;12735;12736 10422;10423 10423 2 0 1969600 6639800 EMFEDTVEER ______________________________ ______________________________ K E M E R V 0 1 0 1 0 0 4 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 10 0 1283.534 Q16576 Q16576 5 14 RBBP7 Histone-binding protein RBBP7 yes yes 2 0.00039764 118.5 By matching By MS/MS 4.33 0.471 2 1 1 2 19459000 1519200 0 17940000 3082 1390 3207 12737;12738;12739 10424;10425 10424 2 1185300 0 2693400 EMFLEDILR SCPVIYIQGRPFEVKEMFLEDILRTTGYTN RPFEVKEMFLEDILRTTGYTNKEMLKYKKE K E M L R T 0 1 0 1 0 0 2 0 0 1 2 0 1 1 0 0 0 0 0 0 0 0 9 0 1164.5849 Q9H6S0 Q9H6S0 377 385 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 2 0.0019465 106.04 By MS/MS 1.5 0.5 1 1 2 4412200 0 0 4412200 3083 1989 3208 12740;12741 10426 10426 1 0 0 979170 EMFNLFQVTDNR MTENEVGKIALHIEKEMFNLFQVTDNRYKS IEKEMFNLFQVTDNRYKSKYRSIMFNLKDP K E M N R Y 0 1 2 1 0 1 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 12 0 1512.7031 Q9BTC0 Q9BTC0 709 720 DIDO1 Death-inducer obliterator 1 yes yes 2 5.7573E-06 160.53 By MS/MS 1.5 0.5 1 1 2 4770100 0 0 4770100 3084 1900 3209 12742;12743 10427 10427 1 0 0 1051200 EMFPYEASTPTGISASCR GEKTEERRVERDILKEMFPYEASTPTGISA PYEASTPTGISASCRRPIKGAAGRPLELSD K E M C R R 2 1 0 0 1 0 2 1 0 1 0 0 1 1 2 3 2 0 1 0 0 0 18 0 2002.8765 P42167 P42167 347 364 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2 1.7477E-08 146.79 By MS/MS 4 0 1 1 14280000 0 0 14280000 3085 799 3210 12744 10428 10428 1 0 0 2332300 EMGFTNMTEIQHK SLCNLVNENTLKAIKEMGFTNMTEIQHKSI IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA K E M H K S 0 0 1 0 0 1 2 1 1 1 0 1 2 1 0 0 2 0 0 0 0 0 13 0 1564.7014 Q9NVP1 Q9NVP1 196 208 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3 0.0016419 89.301 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 2 4 59166000 0 21217000 37950000 3086 2069 3211 12745;12746;12747;12748;12749;12750 10429;10430;10431 10429 3 0 8756500 7396700 EMGTPDVR RAPRALKEIRKFAMKEMGTPDVRIDTRLNK IRKFAMKEMGTPDVRIDTRLNKAVWAKGIR K E M V R I 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 8 0 903.41202 P62899 P62899 56 63 RPL31 60S ribosomal protein L31 yes yes 2 0.02996 77.923 By matching By MS/MS 8 0 2 1 1 106080000 0 41921000 64162000 3087 1048 3212 12751;12752 10432 10432 1 0 19073000 9836700 EMKPVIFLDVFLPR AWDREKRLSFAVPFREMKPVIFLDVFLPRV REMKPVIFLDVFLPRVTELALTASDRQTKV R E M P R V 0 1 0 1 0 0 1 0 0 1 2 1 1 2 2 0 0 0 0 2 0 0 14 1 1702.948 P78527 P78527 900 913 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0033194 77.192 By MS/MS 1.33 0.471 2 1 3 4730300 0 0 4730300 3088 1089 3213;3214 12753;12754;12755 10433;10434 10434 523 2 0 0 1023400 EMLFEGGPRPWILEPSK VDPSSVALVTLGSSKEMLFEGGPRPWILEP LFEGGPRPWILEPSKFFQNVTAEDTDSIGL K E M S K F 0 1 0 0 0 0 3 2 0 1 2 1 1 1 3 1 0 1 0 0 0 0 17 1 1985.0081 Q8TEM1 Q8TEM1 661 677 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.051932 36.226 By MS/MS 1 0 1 1 5681400 0 0 5681400 3089 1666 3215 12756 10435 10435 1 0 0 1224100 EMLPGALHGELHPSEGPWGAPR PKKLKPEQIRVEIKREMLPGALHGELHPSE HGELHPSEGPWGAPREDMTPLNLSSRAEPV R E M P R E 2 1 0 0 0 0 3 4 2 0 3 0 1 0 4 1 0 1 0 0 0 0 22 0 2337.1324 O95785 O95785 1188 1209 WIZ Protein Wiz yes yes 4 0.00072946 62.303 By matching By MS/MS 2 0.816 1 1 1 1 2 13653000 0 2335100 11318000 3090 340 3216 12757;12758;12759 10436 10436 1 0 1141300 2434800 EMQDLGGGER CIDNSGVYTNEYGGREMQDLGGGERMTGFE EYGGREMQDLGGGERMTGFELTEGVKTSGM R E M E R M 0 1 0 1 0 1 2 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1090.4713 Q02413 Q02413 641 650 DSG1 Desmoglein-1 yes yes 2 0.00061699 115.71 By MS/MS 6.57 2.77 1 1 1 1 1 1 1 7 20809000 20809000 0 0 3091 1146 3217 12760;12761;12762;12763;12764;12765;12766 10437;10438 10438 2 20756000 0 0 EMQLRQEEER RRMEELHNQEMQKRKEMQLRQEEERRRREE MQKRKEMQLRQEEERRRREEEMMIRQREME K E M E R R 0 2 0 0 0 2 4 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 10 1 1346.6249 P23246 P23246 562 571 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 0.001792 91.855 By MS/MS 2 0 1 1 6648800 0 6648800 0 3092 638 3218 12767 10439 10439 1 0 2994000 0 EMQQSEAQINTAK EKDVYAVLQLEAEEKEMQQSEAQINTAKRL EKEMQQSEAQINTAKRLLEKGKEAVVQEPE K E M A K R 2 0 1 0 0 3 2 0 0 1 0 1 1 0 0 1 1 0 0 0 0 0 13 0 1476.6879 Q96GQ7 Q96GQ7 622 634 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.00061166 119.53 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 14049000 0 2921900 11127000 3093 1793 3219 12768;12769;12770 10440;10441;10442 10442 3 0 1315800 2244200 EMTLDEWK NKENEVEEVKEEGPKEMTLDEWKAIQNKDR VKEEGPKEMTLDEWKAIQNKDRAKVEFNIR K E M W K A 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 8 0 1050.4692 Q8NC51 Q8NC51 287 294 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0085273 95.541 By MS/MS 4.5 0.5 1 1 2 50549000 0 0 50549000 3094 1630 3220 12771;12772 10443;10444 10443 2 0 0 7972900 EMVLELIR PLRITGDPYKVQQAKEMVLELIRDQGGFRE YKVQQAKEMVLELIRDQGGFREVRNEYGSR K E M I R D 0 1 0 0 0 0 2 0 0 1 2 0 1 0 0 0 0 0 0 1 0 0 8 0 1001.558 Q96AE4 Q96AE4 249 256 FUBP1 Far upstream element-binding protein 1 yes yes 2 0.00047622 129.4 By MS/MS By MS/MS 3.5 0.957 1 2 2 1 3 3 28912000 0 12867000 16045000 3095 1750 3221 12773;12774;12775;12776;12777;12778 10445;10446;10447;10448;10449 10448 5 0 4347800 2842900 EMVPEFVVPDLTGFK GIGFLTSGWRFVQIKEMVPEFVVPDLTGFK EMVPEFVVPDLTGFKLKPYVSYLAPESEET K E M F K L 0 0 0 1 0 0 2 1 0 0 1 1 1 2 2 0 1 0 0 3 0 0 15 0 1706.8589 Q8IXM3 Q8IXM3 55 69 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 0.004502 84.605 By MS/MS 9 0 2 2 8156800 0 0 8156800 3096 1584 3222;3223 12779;12780 10450;10451 10451 651 2 0 0 2605600 EMVVFPLLYPEVFEK FDSVGGLSNHIAALKEMVVFPLLYPEVFEK EMVVFPLLYPEVFEKFKIQPPRGCLFYGPP K E M E K F 0 0 0 0 0 0 3 0 0 0 2 1 1 2 2 0 0 0 1 3 0 0 15 0 1838.9528 Q6PL18 Q6PL18 440 454 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2;3 0.0013689 95.401 By MS/MS 1.33 0.471 2 1 3 5728000 0 0 5728000 3097 1498 3224 12781;12782;12783 10452;10453 10452 2 0 0 1239500 EMVVQLLDDFK LLKSVRNSDPNDPNREMVVQLLDDFKISGV DPNREMVVQLLDDFKISGVNGTHICMVFEV R E M F K I 0 0 0 2 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 11 0 1335.6744 Q96SB4 Q96SB4 142 152 SRPK1 SRSF protein kinase 1 yes yes 2 0.0040577 103.7 By matching By MS/MS 2.5 1.12 1 1 1 1 1 3 5502100 0 1212900 4289200 3098 1832 3225 12784;12785;12786;12787 10454 10454 1 0 592830 853550 ENAAYFQFFSDVR SWMLQLCCCIEAHLKENAAYFQFFSDVREA LKENAAYFQFFSDVREAEGQLQKLQEALRR K E N V R E 2 1 1 1 0 1 1 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 13 0 1592.726 Q15149 Q15149 857 869 PLEC Plectin yes yes 2 0.00029487 135.99 By MS/MS 1 0 1 1 2932600 0 0 2932600 3099 1348 3226 12788 10455 10455 1 0 0 631870 ENADIIR LRVEAEARARAKAERENADIIREQIRLKAA RARAKAERENADIIREQIRLKAAEHRQTVL R E N I R E 1 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 7 0 829.42938 Q5T9A4;Q9NVI7 Q9NVI7 250 256 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.042119 81.297 By MS/MS 3 0 1 1 23962000 0 0 23962000 3100 2066;1456 3227 12789 10456 10456 1 0 0 4647400 ENAEVDGDDDAEEMEAK TDETELARQMERLERENAEVDGDDDAEEME AEVDGDDDAEEMEAKAED____________ R E N A K A 3 0 1 4 0 0 5 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 17 0 1865.7109 P05198 P05198 296 312 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 2.8306E-13 176.25 By MS/MS 6 0 2 2 26604000 0 0 26604000 3101 428 3228;3229 12790;12791 10457;10458 10458 150 2 0 0 3980200 ENAGEDPGLAR PGSGNPCHEASAAQKENAGEDPGLARQAPK AAQKENAGEDPGLARQAPKPRKQRSSLLEK K E N A R Q 2 1 1 1 0 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 11 0 1127.5207 P81605 P81605 43 53 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2 6.0616E-05 143.03 By MS/MS By MS/MS By MS/MS 5.47 2.69 2 3 4 4 1 4 4 3 3 2 17 6 7 1717600000 1504900000 37168000 175510000 3102 1094 3230 12792;12793;12794;12795;12796;12797;12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812;12813;12814;12815;12816;12817;12818;12819;12820;12821 10459;10460;10461;10462;10463;10464;10465;10466;10467;10468;10469;10470;10471;10472;10473;10474;10475;10476;10477;10478;10479;10480;10481;10482 10473 24 1622100000 15946000 95196000 ENALVQMADANQAQLAMNHLSGQR VYGDVHRVKIMFNKKENALVQMADANQAQL ANQAQLAMNHLSGQRLYGKVLRATLSKHQA K E N Q R L 5 1 3 1 0 4 1 1 1 0 3 0 2 0 0 1 0 0 0 1 0 0 24 0 2609.2439 O95758 O95758 396 419 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 3 1.6651E-36 190.88 By matching By MS/MS 4.5 0.5 1 1 1 1 21091000 5326100 15765000 0 3103 337 3231 12822;12823 10483 10483 1 4155300 4063800 0 ENALVQMADGNQAQLAMSHLNGHK VYGDVQRVKILFNKKENALVQMADGNQAQL GNQAQLAMSHLNGHKLHGKPIRITLSKHQN K E N H K L 4 0 3 1 0 3 1 2 2 0 3 1 2 0 0 1 0 0 0 1 0 0 24 0 2576.2224 P26599 P26599 375 398 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 3 2.2462E-36 189.11 By MS/MS By matching 4 0.816 1 1 1 2 1 38131000 0 34975000 3155600 3104 671 3232 12824;12825;12826 10484 10484 1 0 11806000 440150 ENDKQETWMLMELQK TCQDVNHNKVIETNRENDKQETWMLMELQK ENDKQETWMLMELQKIRRQIEHCEGRMTLK R E N Q K I 0 0 1 1 0 2 3 0 0 0 2 2 2 0 0 0 1 1 0 0 0 0 15 1 1921.8914 P15924 P15924 660 674 DSP Desmoplakin yes yes 2 2.021E-06 166.7 By MS/MS 1 0 1 1 4765700 0 0 4765700 3105 572 3233 12827 10485 10485 1 0 0 1026800 ENDPEANIDTIYDR MNIKDEEAIFITLVKENDPEANIDTIYDRF KENDPEANIDTIYDRFVHLDNLPEDGLQCV K E N D R F 1 1 2 3 0 0 2 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 14 0 1663.7326 Q14966 Q14966 996 1009 ZNF638 Zinc finger protein 638 yes yes 2 0.00020534 151.79 By MS/MS 1 0 1 1 8463100 0 0 8463100 3106 1324 3234 12828 10486 10486 1 0 0 1823500 ENEFSFEDNAIR VVTYVGDKDSRAIIRENEFSFEDNAIRGGK IIRENEFSFEDNAIRGGKKASRMKKEASVK R E N I R G 1 1 2 1 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 12 0 1469.6423 Q14839;Q8TDI0 Q14839 818 829 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 6.4297E-08 166.19 By MS/MS By MS/MS 1 0 2 1 1 36422000 0 6762700 29659000 3107 1321;1662 3235 12829;12830 10487;10488 10488 2 0 3305500 6390500 ENEVEEVKEEGPK PEGEEHHPVADTENKENEVEEVKEEGPKEM NKENEVEEVKEEGPKEMTLDEWKAIQNKDR K E N P K E 0 0 1 0 0 0 6 1 0 0 0 2 0 0 1 0 0 0 0 2 0 0 13 1 1514.71 Q8NC51 Q8NC51 274 286 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.0024652 143.79 By MS/MS 4.33 0.471 2 1 3 20666000 0 0 20666000 3108 1630 3236 12831;12832;12833 10489;10490 10490 2 0 0 3313200 ENEVSTSATDELLSQFK QEMDIDEILRLAETRENEVSTSATDELLSQ EVSTSATDELLSQFKVANFATMEDEEELEE R E N F K V 1 0 1 1 0 1 3 0 0 0 2 1 0 1 0 3 2 0 0 1 0 0 17 0 1896.8953 O14647 O14647 1006 1022 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 2 1.1436E-05 138.02 By MS/MS 1 0 1 1 8365900 0 0 8365900 3109 142 3237 12834 10491 10491 1 0 0 1802600 ENFSNVSLR NSNFSEVTLAGLASKENFSNVSLRSVNLTE AGLASKENFSNVSLRSVNLTEQNSNNSAVP K E N L R S 0 1 2 0 0 0 1 0 0 0 1 0 0 1 0 2 0 0 0 1 0 0 9 0 1064.5251 O95425 O95425 1416 1424 SVIL Supervillin yes yes 2 0.010696 88.358 By MS/MS 1 0 1 1 6975900 0 0 6975900 3110 325 3238 12835 10492 10492 1 0 0 1503100 ENGLPLEYQEK PPSPQYKKIICMGAKENGLPLEYQEKLKAI MGAKENGLPLEYQEKLKAIEPNDYTGKVSE K E N E K L 0 0 1 0 0 1 3 1 0 0 2 1 0 0 1 0 0 0 1 0 0 0 11 0 1318.6405 O75223 O75223 149 159 GGCT Gamma-glutamylcyclotransferase yes yes 2 0.0089146 93.325 By MS/MS 6 3.56 1 1 1 3 21073000 21073000 0 0 3111 248 3239 12836;12837;12838 10493;10494 10494 2 17087000 0 0 ENIAYLTHTER AVSSNVGAYMQPGARENIAYLTHTERRKDF PGARENIAYLTHTERRKDFQYEAMQERREA R E N E R R 1 1 1 0 0 0 2 0 1 1 1 0 0 0 0 0 2 0 1 0 0 0 11 0 1345.6626 Q9UBB9 Q9UBB9 729 739 TFIP11 Tuftelin-interacting protein 11 yes yes 3 0.071953 36.679 By MS/MS 2 0 1 1 4484400 0 0 4484400 3112 2129 3240 12839 10495 10495 1 0 0 1013400 ENIESLAHALVEIIK CGIIALDEPTTNLDRENIESLAHALVEIIK ENIESLAHALVEIIKSRSQQRNFQLLVITH R E N I K S 2 0 1 0 0 0 3 0 1 3 2 1 0 0 0 1 0 0 0 1 0 0 15 0 1677.9301 Q92878 Q92878 1240 1254 RAD50 DNA repair protein RAD50 yes yes 2;3 0.00028231 130.58 By MS/MS 2 0.707 1 2 1 4 8974600 0 0 8974600 3113 1726 3241 12840;12841;12842;12843 10496;10497;10498 10497 3 0 0 1959200 ENILEEFSK NNRLFVGSIPKNKTKENILEEFSKVTEGLV PKNKTKENILEEFSKVTEGLVDVILYHQPD K E N S K V 0 0 1 0 0 0 3 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 9 0 1107.5448 O43390 O43390 260 268 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.025722 78.516 By matching By MS/MS By MS/MS 4.57 1.4 2 2 1 1 1 1 1 5 28922000 1662700 2735100 24524000 3114 195 3242 12844;12845;12846;12847;12848;12849;12850 10499;10500;10501 10499 3 1297200 1166000 4394400 ENISAAIVQSNVVLSAGGPGGPGAEGAK E N A K 5 0 2 0 0 1 2 6 0 2 1 1 0 0 2 3 0 0 0 3 0 0 28 0 2549.3085 REV__O94910 yes yes 3 0.016183 27.638 By MS/MS 5 0 2 2 41565000 41565000 0 0 + 3115 2325 3243 12851;12852 10502 10502 1 33299000 0 0 ENITDAIWGSESNYEAIK SEKHAYSWDINRALKENITDAIWGSESNYE TDAIWGSESNYEAIKEGVNIRYLDLKQNCD K E N I K E 2 0 2 1 0 0 3 1 0 3 0 1 0 0 0 2 1 1 1 0 0 0 18 0 2038.9484 Q8WUM0 Q8WUM0 318 335 NUP133 Nuclear pore complex protein Nup133 yes yes 2 1.544E-08 127.32 By MS/MS 1.5 0.5 1 1 2 11219000 0 0 11219000 3116 1675 3244 12853;12854 10503 10503 1 0 0 2488400 ENIVEAIIHSPELIR ISPYTIPEEDRHCIRENIVEAIIHSPELIR ENIVEAIIHSPELIRVQLTTCIHHIIKHDY R E N I R V 1 1 1 0 0 0 3 0 1 4 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1731.9519 O95373 O95373 93 107 IPO7 Importin-7 yes yes 3 0.00015574 98.943 By MS/MS 2 0 1 1 2493700 0 0 2493700 3117 322 3245 12855 10504 10504 1 0 0 563530 ENLESWLNYLK KKLVLILNKSDLVPKENLESWLNYLKKELP LVPKENLESWLNYLKKELPTVVFRASTKPK K E N L K K 0 0 2 0 0 0 2 0 0 0 3 1 0 0 0 1 0 1 1 0 0 0 11 0 1407.7034 Q9BVP2 Q9BVP2 186 196 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.00095255 114.84 By matching By MS/MS 3.5 1.12 1 1 1 1 1 3 18370000 183460 0 18187000 3118 1917 3246 12856;12857;12858;12859 10505 10505 1 221040 0 3379600 ENLFMDLLR AVQHCLALLNLTLQKENLFMDLLRESQLAL NLTLQKENLFMDLLRESQLALIVCPLEQLL K E N L R E 0 1 1 1 0 0 1 0 0 0 3 0 1 1 0 0 0 0 0 0 0 0 9 0 1149.5852 Q92621 Q92621 860 868 NUP205 Nuclear pore complex protein Nup205 yes yes 2 1.9815E-16 176.09 By MS/MS 1 0 1 1 9543100 0 0 9543100 3119 1714 3247 12860 10506 10506 1 0 0 2056200 ENLLEEQGSIALR AAYVKKLDPAQSASRENLLEEQGSIALRQE SRENLLEEQGSIALRQEQIDNQTRITKEAG R E N L R Q 1 1 1 0 0 1 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 13 0 1470.7678 Q13813 Q13813 1033 1045 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 4.7699E-05 158.47 By MS/MS By MS/MS 1 0 2 1 1 26438000 0 9612000 16826000 3120 1268 3248 12861;12862 10507;10508 10507 2 0 4698200 3625400 ENLLLSDSPSCR FVGNQLPFIGFTYYRENLLLSDSPSCRETD YYRENLLLSDSPSCRETDSIQSRKNEESQE R E N C R E 0 1 1 1 1 0 1 0 0 0 3 0 0 0 1 3 0 0 0 0 0 0 12 0 1389.6558 O75116 O75116 418 429 ROCK2 Rho-associated protein kinase 2 yes yes 2 0.045076 66.299 By MS/MS 1 0 1 1 0 0 0 0 3121 242 3249 12863 10509 10509 1 0 0 0 ENLPISGHK MVFKLAQAYYESTRKENLPISGHKHRKHSH YESTRKENLPISGHKHRKHSHHDKHEDNKQ K E N H K H 0 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 9 0 993.52434 CON__P20930;P20930 CON__P20930 92 100 FLG Filaggrin yes no 2 0.0039464 98.933 By MS/MS 7 3.54 1 1 1 1 4 26630000 26630000 0 0 + 3122 62 3250 12864;12865;12866;12867 10510;10511 10511 2 26442000 0 0 ENLRQEIEK TLELQGLINDLQRERENLRQEIEKFQKQAL DLQRERENLRQEIEKFQKQALEASNRIQES R E N E K F 0 1 1 0 0 1 3 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 1 1157.6041 P15924 P15924 1778 1786 DSP Desmoplakin yes yes 2 0.0013174 106.68 By MS/MS 9 0 1 1 0 0 0 0 3123 572 3251 12868 10512 10512 1 0 0 0 ENLTDLVVDTDTLGESTQPQR GPPVAQVEQDLPISRENLTDLVVDTDTLGE VVDTDTLGESTQPQREGAQVPTGREREQHV R E N Q R E 0 1 1 3 0 2 2 1 0 0 3 0 0 0 1 1 4 0 0 2 0 0 21 0 2330.1238 Q14676 Q14676 643 663 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 1.4127E-70 230.16 By MS/MS 1 0 1 1 3534200 0 0 3534200 3124 1310 3252 12869 10513 10513 1 0 0 761500 ENPDSFLNHVLALTAQSPDIEHLNEVSLK MHEEENLDRLHQQEKENPDSFLNHVLALTA AQSPDIEHLNEVSLKLPLSDVAVKTLQNMN K E N L K L 2 0 3 2 0 1 3 0 2 1 5 1 0 1 2 3 1 0 0 2 0 0 29 0 3229.6255 Q8WXH0 Q8WXH0 5529 5557 SYNE2 Nesprin-2 yes yes 4 0.011661 28.223 By MS/MS 1 0 1 1 2856900 0 0 2856900 3125 1696 3253 12870 10514 10514 1 0 0 615560 ENPGLTQDIIMK SAAQTLRAAFIKAEKENPGLTQDIIMKILE AEKENPGLTQDIIMKILEKKSVEVNFTESL K E N M K I 0 0 1 1 0 1 1 1 0 2 1 1 1 0 1 0 1 0 0 0 0 0 12 0 1357.6912 Q9BUL8 Q9BUL8 54 65 PDCD10 Programmed cell death protein 10 yes yes 2 0.053891 72.096 By matching By MS/MS 7 0 2 1 1 5767200 0 1361400 4405800 3126 1908 3254 12871;12872 10515 10515 1 0 781750 781780 ENPSATLEDLEKPGVDEEPQHVLLR QITAQQINKLEELWKENPSATLEDLEKPGV EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV K E N L R Y 1 1 1 2 0 1 5 1 1 0 4 1 0 0 3 1 1 0 0 2 0 0 25 1 2814.4036 Q92900 Q92900 271 295 UPF1 Regulator of nonsense transcripts 1 yes yes 4 5.3122E-08 80.293 By MS/MS 1.5 0.5 1 1 2 19680000 0 0 19680000 3127 1729 3255 12873;12874 10516 10516 1 0 0 4414500 ENPYYDSR KIYIDSNNNPERFLRENPYYDSRVVGKYCE NPERFLRENPYYDSRVVGKYCEKRDPHLAC R E N S R V 0 1 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 8 0 1042.4356 Q00610 Q00610 896 903 CLTC Clathrin heavy chain 1 yes yes 2 0.02996 77.923 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 27892000 0 19723000 8168200 3128 1125 3256 12875;12876;12877;12878 10517;10518 10518 2 0 8949200 1663700 ENQELNAHNQELNNR QALEAERQALRQCQRENQELNAHNQELNNR ENQELNAHNQELNNRLAAEITRLRTLLTGD R E N N R L 1 1 5 0 0 2 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 15 0 1821.8354 Q6WCQ1 Q6WCQ1 854 868 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.00097338 82.925 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 7175800 0 5221500 1954400 3129 1507 3257 12879;12880;12881 10519;10520 10520 2 0 2412500 441650 ENSETVVTGSLDDLVK HDDAIWSVAWGTNKKENSETVVTGSLDDLV NSETVVTGSLDDLVKVWKWRDERLDLQWSL K E N V K V 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 2 2 0 0 3 0 0 16 0 1704.8418 Q9GZS3 Q9GZS3 30 45 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 2 0.0073953 76.357 By MS/MS 6 0 1 1 6415600 0 0 6415600 3130 1954 3258 12882 10521 10521 1 0 0 959840 ENSFGSPLEFR HFSPEHKELSNSPLRENSFGSPLEFRNSGP SPLRENSFGSPLEFRNSGPLGTEMNTGFSS R E N F R N 0 1 1 0 0 0 2 1 0 0 1 0 0 2 1 2 0 0 0 0 0 0 11 0 1281.599 Q9UQ35 Q9UQ35 1324 1334 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0034733 105.2 By MS/MS 1 0 1 1 4675700 0 0 4675700 3131 2219 3259 12883 10522 10522 1 0 0 1007500 ENSFLPFQIDHIR IVFELLGLSTYDFIKENSFLPFQIDHIRQM IKENSFLPFQIDHIRQMAYQICQSINFLHH K E N I R Q 0 1 1 1 0 1 1 0 1 2 1 0 0 2 1 1 0 0 0 0 0 0 13 0 1614.8154 Q9HAZ1 Q9HAZ1 252 264 CLK4 Dual specificity protein kinase CLK4 yes yes 2 0.03932 72.096 By MS/MS 3 0.816 1 1 1 3 39660000 0 0 39660000 3132 2005 3260 12884;12885;12886 10523 10523 1 0 0 7136500 ENSGAAEKPVTIHATPEGTSEACR NITKQTQSRVDIHRKENSGAAEKPVTIHAT VTIHATPEGTSEACRMILEIMQKEADETKL K E N C R M 4 1 1 0 1 0 4 2 1 1 0 1 0 0 2 2 3 0 0 1 0 0 24 1 2511.166 Q9Y6M1 Q9Y6M1 233 256 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 4 0.023421 31.36 By MS/MS 3 0 1 1 4184300 0 0 4184300 3133 2315 3261 12887 10524 10524 1 0 0 811560 ENVVNFIDCLVR ELRRSKKQTKFEVLRENVVNFIDCLVREYL VLRENVVNFIDCLVREYLLPPETQPLHEVV R E N V R E 0 1 2 1 1 0 1 0 0 1 1 0 0 1 0 0 0 0 0 3 0 0 12 0 1476.7395 Q9UBD5 Q9UBD5 553 564 ORC3 Origin recognition complex subunit 3 yes yes 2 0.016143 87.298 By MS/MS 3 0 1 1 2783200 0 0 2783200 3134 2130 3262 12888 10525 10525 1 0 0 539820 ENVYEELR DRFLICMLHKMGFDRENVYEELRQCVRNAP HKMGFDRENVYEELRQCVRNAPQFRFDWFI R E N L R Q 0 1 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 1050.4982 P28370 P28370 982 989 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.0057707 98.904 By MS/MS 2 0 1 1 4917800 0 0 4917800 3135 693 3263 12889 10526 10526 1 0 0 1111300 ENYLEENLLYAPSLR AGWEEVLRWQDRSSRENYLEENLLYAPSLR ENYLEENLLYAPSLRFIHGLIKQFSENIYE R E N L R F 1 1 2 0 0 0 3 0 0 0 4 0 0 0 1 1 0 0 2 0 0 0 15 0 1822.9101 Q7L2E3 Q7L2E3 959 973 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 2.6362E-25 202.81 By MS/MS 2 0.816 1 1 1 3 23310000 0 0 23310000 3136 1522 3264 12890;12891;12892 10527 10527 1 0 0 5190300 ENYLGNSLMAPVGR QDQFNWEDVKTDKQRENYLGNSLMAPVGRW RENYLGNSLMAPVGRWQKGRDLTWYAKGRA R E N G R W 1 1 2 0 0 0 1 2 0 0 2 0 1 0 1 1 0 0 1 1 0 0 14 0 1519.7453 Q9BU76 Q9BU76 28 41 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 1.283E-12 120.06 By MS/MS 6 0 1 1 0 0 0 0 3137 1904 3265 12893 10528 10528 1 0 0 0 EPACDDPDTEQAALAAVDYINK WGCHSIPLDPVAGYKEPACDDPDTEQAALA DTEQAALAAVDYINKHLPRGYKHTLNQIDS K E P N K H 5 0 1 4 1 1 2 0 0 1 1 1 0 0 2 0 1 0 1 1 0 0 22 0 2405.0693 CON__P12763 CON__P12763 29 50 yes yes 2;3 1.2599E-92 239.58 By MS/MS 4.5 0.5 2 2 4 25888000 25888000 0 0 + 3138 55 3266 12894;12895;12896;12897 10529;10530 10530 2 20289000 0 0 EPAEQPGDGER AQSSKADSLLAVVKREPAEQPGDGERTDCE VVKREPAEQPGDGERTDCEPVGLEPAVEQS R E P E R T 1 1 0 1 0 1 3 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 11 0 1183.5105 Q14151;Q15424 Q15424 296 306 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2 0.019997 84.213 By MS/MS 3.5 0.5 1 1 2 975640 0 0 975640 3139 1364;1285 3267 12898;12899 10531 10531 1 0 0 187300 EPAFEDITLESER ELDAVWEDIRERFVKEPAFEDITLESERKR VKEPAFEDITLESERKRIFKDFMHVLEHEC K E P E R K 1 1 0 1 0 0 4 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 13 0 1534.7151 O75400 O75400 777 789 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 0.00029713 136.27 By MS/MS 2 0.816 1 1 1 3 47394000 0 0 47394000 3140 258 3268 12900;12901;12902 10532;10533 10533 1 0 0 10417000 EPAQTEAAASTEPATR LERLQSRARERQQQREPAQTEAAASTEPAT PAQTEAAASTEPATRRRRRPRRRRRVNDAE R E P T R R 5 1 0 0 0 1 3 0 0 0 0 0 0 0 2 1 3 0 0 0 0 0 16 0 1628.7642 Q8N8A6 Q8N8A6 50 65 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.0092663 62.924 By MS/MS 3 0 1 1 0 0 0 0 3141 1615 3269 12903 10534 10534 1 0 0 0 EPDVLILDEPTNNLDIESIDALGEAINEYK GGQKARVVFAELACREPDVLILDEPTNNLD IESIDALGEAINEYKGAVIVVSHDARLITE R E P Y K G 2 0 3 4 0 0 5 1 0 4 4 1 0 0 2 1 1 0 1 1 0 0 30 0 3341.6402 Q8NE71 Q8NE71 760 789 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 3 0.010572 28.443 By MS/MS 2 0 1 1 30711000 0 0 30711000 3142 1638 3270 12904 10535 10535 1 0 0 6940100 EPEYVPWTATSGPGGIR QNRNSLYRREESLEKEPEYVPWTATSGPGG EYVPWTATSGPGGIRTVIIRQHEIVLKVAY K E P I R T 1 1 0 0 0 0 2 3 0 1 0 0 0 0 3 1 2 1 1 1 0 0 17 0 1815.8792 Q8WUM0 Q8WUM0 759 775 NUP133 Nuclear pore complex protein Nup133 yes yes 2 7.9782E-06 126.34 By MS/MS 2 0 1 1 4829400 0 0 4829400 3143 1675 3271 12905 10536 10536 1 0 0 1091300 EPFFHGHDNYDQLVR MWSLGCMLASMIFRKEPFFHGHDNYDQLVR EPFFHGHDNYDQLVRIAKVLGTEDLYDYID K E P V R I 0 1 1 2 0 1 1 1 2 0 1 0 0 2 1 0 0 0 1 1 0 0 15 0 1872.8543 P68400 P68400 230 244 CSNK2A1 Casein kinase II subunit alpha yes yes 2;3 1.4501E-11 178.95 By MS/MS 5 0 2 2 23419000 0 0 23419000 3144 1080 3272 12906;12907 10537;10538 10537 2 0 0 3266500 EPFLLSGGDDGALK TAHDGDVNVISWSRREPFLLSGGDDGALKI REPFLLSGGDDGALKIWDLRQFKSGSPVAT R E P L K I 1 0 0 2 0 0 1 3 0 0 3 1 0 1 1 1 0 0 0 0 0 0 14 0 1417.7089 Q9BQ67 Q9BQ67 320 333 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2 5.0492E-07 105.13 By MS/MS 4 0 1 1 0 0 0 0 3145 1878 3273 12908 10539 10539 1 0 0 0 EPFNLFYIEK NYTIFYSISGPGVDKEPFNLFYIEKDTGDI PGVDKEPFNLFYIEKDTGDIFCTRSIDREK K E P E K D 0 0 1 0 0 0 2 0 0 1 1 1 0 2 1 0 0 0 1 0 0 0 10 0 1298.6547 Q08554 Q08554 180 189 DSC1 Desmocollin-1 yes yes 2 0.0082446 90.906 By MS/MS 5 0.816 1 1 1 3 7697400 7697400 0 0 3146 1185 3274 12909;12910;12911 10540 10540 1 6382800 0 0 EPFPTIYVDSQK KPFKTGLKALMTVGKEPFPTIYVDSQKENE VGKEPFPTIYVDSQKENERWNVISKSQLKN K E P Q K E 0 0 0 1 0 1 1 0 0 1 0 1 0 1 2 1 1 0 1 1 0 0 12 0 1422.7031 O43776 O43776 39 50 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.0011833 116.12 By matching By MS/MS By MS/MS 3.2 0.748 1 2 2 1 2 2 57161000 3743800 13416000 40002000 3147 211 3275 12912;12913;12914;12915;12916 10541;10542;10543 10542 3 4510900 4683000 7441800 EPFTIAQGK KKVERLTMQVSSLQREPFTIAQGKGQKLCE VSSLQREPFTIAQGKGQKLCEIERIHFFLS R E P G K G 1 0 0 0 0 1 1 1 0 1 0 1 0 1 1 0 1 0 0 0 0 0 9 0 989.5182 P35659 P35659 76 84 DEK Protein DEK yes yes 2 0.0054787 96.19 By MS/MS By MS/MS 4.86 1.25 1 2 2 1 1 3 4 248360000 0 70394000 177960000 3148 758 3276 12917;12918;12919;12920;12921;12922;12923 10544;10545;10546;10547;10548;10549 10549 5 0 21066000 27800000 EPGDQGPAHPPGADMSHSL KRQQVEALYRLQGQKEPGDQGPAHPPGADM QGPAHPPGADMSHSL_______________ K E P S L - 2 0 0 2 0 1 1 3 2 0 1 0 1 0 4 2 0 0 0 0 0 0 19 0 1898.8217 Q9Y399 Q9Y399 278 296 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 2 6.5303E-06 106.11 By MS/MS 6.5 0.5 1 1 2 21468000 0 0 21468000 3149 2260 3277 12924;12925 10550;10551 10550 2 0 0 3510600 EPGLQIWR NSMVVEHPEFLKAGKEPGLQIWRVEKFDLV EFLKAGKEPGLQIWRVEKFDLVPVPTNLYG K E P W R V 0 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 0 0 0 8 0 997.53451 P06396 P06396 65 72 GSN Gelsolin no no 2 0.033055 86.086 By MS/MS 2.5 0.5 1 1 2 2564300 0 2564300 0 + 3150 440 3278 12926;12927 10552;10553 10552 2 0 1093200 0 EPGVHTGSSRPPAPSSHGSLAPLGPSR RGTRAESEASSRVPREPGVHTGSSRPPAPS APSSHGSLAPLGPSRGKGVGSTFESFRINI R E P S R G 2 2 0 0 0 0 1 4 2 0 2 0 0 0 6 6 1 0 0 1 0 0 27 1 2634.3263 Q9P1Y6 Q9P1Y6 740 766 PHRF1 PHD and RING finger domain-containing protein 1 yes yes 4 0.0075738 33.265 By MS/MS 1.5 0.5 1 1 2 9150100 0 0 9150100 3151 2119 3279 12928;12929 10554 10554 1 0 0 2030100 EPLEDGDPEDDR SEDGMQSARTQARPREPLEDGDPEDDRTLD RPREPLEDGDPEDDRTLDDDELAEYDLDKY R E P D R T 0 1 0 4 0 0 3 1 0 0 1 0 0 0 2 0 0 0 0 0 0 0 12 0 1385.5583 Q13610 Q13610 74 85 PWP1 Periodic tryptophan protein 1 homolog yes yes 2 0.0029147 107.83 By MS/MS 4 0 1 1 2114100 0 0 2114100 3152 1262 3280 12930 10555 10555 1 0 0 345300 EPLLVTNGADNALR NAHSTAIAGLTFLHREPLLVTNGADNALRI REPLLVTNGADNALRIWIFDGPTGEGRLLR R E P L R I 2 1 2 1 0 0 1 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 14 0 1481.7838 Q8NI36 Q8NI36 345 358 WDR36 WD repeat-containing protein 36 yes yes 2 3.5424E-11 175.33 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 18508000 0 9794300 8713800 3153 1648 3281 12931;12932 10556;10557 10556 2 0 4410500 1877500 EPLPPIQQHIWNMLNPPAEVTTK QRLFQCLLHRALHPREPLPPIQQHIWNMLN HIWNMLNPPAEVTTKSQIPLSKIKTLFPLI R E P T K S 1 0 2 0 0 2 2 0 1 2 2 1 1 0 5 0 2 1 0 1 0 0 23 0 2652.3734 P13010 P13010 503 525 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 4.4525E-44 205.98 By MS/MS By MS/MS 2.89 1.1 1 2 4 1 1 5 4 270720000 0 120160000 150570000 3154 542 3282;3283 12933;12934;12935;12936;12937;12938;12939;12940;12941 10558;10559;10560;10561;10562;10563;10564;10565;10566;10567;10568;10569;10570;10571;10572 10570 241 15 0 50867000 29218000 EPLSLINVR ARPGPGVWDPNWDRREPLSLINVRKRNVES PNWDRREPLSLINVRKRNVESGEEELASKL R E P V R K 0 1 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 9 0 1039.6026 Q96HS1 Q96HS1 66 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00085891 110.81 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 53610000 0 13295000 40315000 3155 1796 3284 12942;12943;12944;12945 10573;10574;10575 10573 3 0 4602300 6137500 EPLTADEEEALKQEHQR FKEFTRQEQINCVTREPLTADEEEALKQEH LTADEEEALKQEHQRKEKELLEKIQSAIAC R E P Q R K 2 1 0 1 0 2 5 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 17 1 2021.9654 Q9NRL2 Q9NRL2 768 784 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3;4 8.2241E-06 105.63 By MS/MS 1.67 0.471 1 2 3 17564000 0 0 17564000 3156 2045 3285 12946;12947;12948 10576;10577 10576 1 0 0 3882300 EPLVATNLPGR QAAKKVHTSKGDLPREPLVATNLPGRGQLQ DLPREPLVATNLPGRGQLQKLASERNLFIS R E P G R G 1 1 1 0 0 0 1 1 0 0 2 0 0 0 2 0 1 0 0 1 0 0 11 0 1165.6455 P42166 P42166 254 264 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.00017596 138.06 By MS/MS By MS/MS 4.75 2.49 2 1 1 3 1 48430000 0 11116000 37314000 3157 798 3286 12949;12950;12951;12952 10578;10579;10580 10578 3 0 5114600 7237200 EPLYVGVDDDK QTRKVEDLARISLKKEPLYVGVDDDKANAT SLKKEPLYVGVDDDKANATVDGLEQGYVVC K E P D K A 0 0 0 3 0 0 1 1 0 0 1 1 0 0 1 0 0 0 1 2 0 0 11 0 1248.5874 Q9NVP1 Q9NVP1 382 392 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.0084099 94.309 By MS/MS 3 0.816 1 1 1 3 21252000 0 0 21252000 3158 2069 3287 12953;12954;12955 10581 10581 1 0 0 3958800 EPNPQGESHPPLNLAFLDILSEFSSK AIAMLHKDGIEFAFKEPNPQGESHPPLNLA LNLAFLDILSEFSSKLLRQDKRTVYVYLEK K E P S K L 1 0 2 1 0 1 3 1 1 1 4 1 0 2 4 4 0 0 0 0 0 0 26 0 2865.4185 Q8N3U4 Q8N3U4 984 1009 STAG2 Cohesin subunit SA-2 yes yes 3 4.8975E-06 71.86 By MS/MS 1.5 0.5 1 1 2 81149000 0 0 81149000 3159 1603 3288 12956;12957 10582 10582 1 0 0 18298000 EPPADVWTPPAR LCNVVEQFLQADLAREPPADVWTPPARASA LAREPPADVWTPPARASAPSPNAQVACDHC R E P A R A 2 1 0 1 0 0 1 0 0 0 0 0 0 0 4 0 1 1 0 1 0 0 12 0 1334.6619 Q14258 Q14258 84 95 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.0049715 103.26 By matching By MS/MS By MS/MS 3.6 0.8 3 1 1 1 1 3 42308000 9209200 0 33099000 3160 1297 3289 12958;12959;12960;12961;12962 10583;10584 10584 2 10625000 0 5414600 EPPLSLTIHLTSPVVR LQSVDDAAIVIKNTKEPPLSLTIHLTSPVV PPLSLTIHLTSPVVREEMEKVLAGETLSVN K E P V R E 0 1 0 0 0 0 1 0 1 1 3 0 0 0 3 2 2 0 0 2 0 0 16 0 1758.004 Q12906 Q12906 162 177 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 5.3427E-174 300.71 By MS/MS By MS/MS 2.11 0.737 2 4 3 3 6 195360000 0 66654000 128710000 3161 1211 3290 12963;12964;12965;12966;12967;12968;12969;12970;12971 10585;10586;10587;10588;10589;10590;10591;10592;10593 10586 6 0 29821000 27824000 EPPPEFEFIADPPSISAFDLDVVK QKVQAQVIQETIVPKEPPPEFEFIADPPSI ADPPSISAFDLDVVKLTAQFVARNGRQFLT K E P V K L 2 0 0 3 0 0 3 0 0 2 1 1 0 3 5 2 0 0 0 2 0 0 24 0 2658.3105 Q15459 Q15459 145 168 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 6.8318E-05 75.445 By MS/MS 2.33 0.471 2 1 3 14494000 0 0 14494000 3162 1369 3291 12972;12973;12974 10594;10595 10595 2 0 0 3218400 EPPTDVTPTFLTTGVLSTLR HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV VTPTFLTTGVLSTLRQADFEAHNILRESGY K E P L R Q 0 1 0 1 0 0 1 1 0 0 3 0 0 1 3 1 6 0 0 2 0 0 20 0 2144.1365 P49915 P49915 570 589 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.0067723 61.409 By MS/MS 3 0 1 1 4611700 0 0 4611700 3163 873 3292 12975 10596 10596 1 0 0 894460 EPQVYTLPPSQEEMTK SSIEKTISKAKGQPREPQVYTLPPSQEEMT PQVYTLPPSQEEMTKNQVSLTCLVKGFYPS R E P T K N 0 0 0 0 0 2 3 0 0 0 1 1 1 0 3 1 2 0 1 1 0 0 16 0 1875.8924 P01861 P01861 225 240 IGHG4 Ig gamma-4 chain C region yes yes 2 5.526E-05 139.74 By MS/MS 9 0 1 1 3253700 3253700 0 0 3164 384 3293 12976 10597 10597 1 1826300 0 0 EPQVYTLPPSR APIEKTISKAKGQPREPQVYTLPPSRDELT GQPREPQVYTLPPSRDELTKNQVSLTCLVK R E P S R D 0 1 0 0 0 1 1 0 0 0 1 0 0 0 3 1 1 0 1 1 0 0 11 0 1285.6667 P0DOX5;P01857;P01859;P01860 P0DOX5 347 357 IGHG1;IGHG2;IGHG3 Ig gamma-1 chain C region;Ig gamma-2 chain C region;Ig gamma-3 chain C region no no 2 2.3543E-13 175.93 By MS/MS 7 3.59 1 1 1 3 3 9 62541000 62541000 0 0 3165 381;383;382 3294 12977;12978;12979;12980;12981;12982;12983;12984;12985 10598;10599;10600;10601;10602;10603;10604;10605;10606;10607 10601 10 59725000 0 0 EPQVYTLPPSRDELTK APIEKTISKAKGQPREPQVYTLPPSRDELT PQVYTLPPSRDELTKNQVSLTCLVKGFYPS R E P T K N 0 1 0 1 0 1 2 0 0 0 2 1 0 0 3 1 2 0 1 1 0 0 16 1 1871.9629 P0DOX5;P01857 P0DOX5 347 362 IGHG1 Ig gamma-1 chain C region yes no 3 0.0058595 62.525 By MS/MS 9.5 0.5 1 1 2 15975000 15975000 0 0 3166 381 3295 12986;12987 10608;10609 10608 2 10453000 0 0 EPQVYTLPPSREEMTK APIEKTISKTKGQPREPQVYTLPPSREEMT PQVYTLPPSREEMTKNQVSLTCLVKGFYPS R E P T K N 0 1 0 0 0 1 3 0 0 0 1 1 1 0 3 1 2 0 1 1 0 0 16 1 1903.935 P01859;P01860 P01860 275 290 IGHG2;IGHG3 Ig gamma-2 chain C region;Ig gamma-3 chain C region no no 2;3 1.5375E-07 168.61 By MS/MS 9.33 0.471 2 1 3 33108000 33108000 0 0 3167 383;382 3296 12988;12989;12990 10610;10611;10612 10610 3 20161000 0 0 EPTAVLKDEAMVLHLTLGK QLLPMAEQLLEKIQKEPTAVLKDEAMVLHL VLKDEAMVLHLTLGKYNEFSVSLLNEDPKS K E P G K Y 2 0 0 1 0 0 2 1 1 0 4 2 1 0 1 0 2 0 0 2 0 0 19 1 2064.1289 Q9H583 Q9H583 1048 1066 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3 0.0019228 63.578 By MS/MS 1 0 1 1 6593200 0 0 6593200 3168 1984 3297 12991 10613 10613 1 0 0 1420600 EPVLAQLR ESHMKSRKAREQEAREPVLAQLRGLVSTLQ AREQEAREPVLAQLRGLVSTLQSATEQMAA R E P L R G 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 924.53927 Q6P2E9 Q6P2E9 1168 1175 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.018595 98.415 By MS/MS 2 0 1 1 0 0 0 0 3169 1489 3298 12992 10614 10614 1 0 0 0 EPVQLETLSIR MNTHLKAVKMTLKNREPVQLETLSIRGNNI LKNREPVQLETLSIRGNNIRYFILPDSLPL R E P I R G 0 1 0 0 0 1 2 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 11 0 1283.7085 P62314 P62314 51 61 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 2 2.2578E-26 196.37 By MS/MS By MS/MS By MS/MS 8.33 0.745 1 2 3 1 2 3 96127000 12648000 21708000 61771000 3170 1022 3299 12993;12994;12995;12996;12997;12998 10615;10616;10617;10618;10619;10620;10621 10619 7 7099400 12043000 12255000 EPWLLPSQHNDIIR QPFFRAHAHLDTGRREPWLLPSQHNDIIRD REPWLLPSQHNDIIRDALGQRYSLLPFWYT R E P I R D 0 1 1 1 0 1 1 0 1 2 2 0 0 0 2 1 0 1 0 0 0 0 14 0 1716.8948 Q14697 Q14697 685 698 GANAB Neutral alpha-glucosidase AB yes yes 3 0.062633 37.555 By MS/MS 2 0 1 1 7639900 0 7639900 0 3171 1317 3300 12999 10622 10622 1 0 3440400 0 EQAAAAPFPSPAPASPAISVVGVSAGGHTLSRPPPAQVPR LMRAQAQEQERRERREQAAAAPFPSPAPAS GGHTLSRPPPAQVPREVLKVQTHLENPTRY R E Q P R E 9 2 0 0 0 2 1 3 1 1 1 0 0 1 9 5 1 0 0 4 0 0 40 1 3842.0228 P19532 P19532 135 174 TFE3 Transcription factor E3 yes yes 4 1.8496E-49 120.82 By MS/MS 3.5 0.5 1 1 2 8257500 0 8257500 0 3172 610 3301 13000;13001 10623 10623 1 0 2969200 0 EQADFALEALAK RIKVGRDYVQKAQTKEQADFALEALAKATY QTKEQADFALEALAKATYERLFRWLVLRLN K E Q A K A 4 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1304.6612 Q7Z406 Q7Z406 434 445 MYH14 Myosin-14 yes yes 2 0.012043 91.095 By MS/MS By MS/MS 1 0 2 1 1 197690000 0 169180000 28505000 3173 1531 3302 13002;13003 10624;10625;10626 10624 3 0 82693000 6142000 EQAELTGLR DGSLEKDRTLTPLGREQAELTGLRLASLGL LTPLGREQAELTGLRLASLGLKFNKIVHSS R E Q L R L 1 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1015.5298 Q96HS1 Q96HS1 126 134 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00067159 129.55 By matching By MS/MS By MS/MS 5.6 1.02 1 1 2 1 2 1 2 109350000 17153000 11029000 81166000 3174 1796 3303 13004;13005;13006;13007;13008 10627;10628 10628 2 13589000 3817800 12377000 EQAFGGLTR QLGQSEGSVSLSLVKEQAFGGLTRALALDC SLSLVKEQAFGGLTRALALDCEMVGVGPKG K E Q T R A 1 1 0 0 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 0 0 0 9 0 977.49304 Q9GZR2 Q9GZR2 234 242 REXO4 RNA exonuclease 4 yes yes 2 0.055875 69.812 By MS/MS 4 0 1 1 7733000 0 0 7733000 3175 1951 3304 13009 10629 10629 1 0 0 1263000 EQAGEAEGAQAVTQLMVDR VQNVVKLYASILQQKEQAGEAEGAQAVTQL EAEGAQAVTQLMVDRLPQFVQSADLEVQER K E Q D R L 4 1 0 1 0 3 3 2 0 0 1 0 1 0 0 0 1 0 0 2 0 0 19 0 2001.9426 O14617 O14617 538 556 AP3D1 AP-3 complex subunit delta-1 yes yes 2 5.8384E-31 201.24 By MS/MS 2 0 1 1 7059000 0 0 7059000 3176 139 3305 13010 10630 10630 1 0 0 1595200 EQALSTLQLEHTSTQALVSELLPAK LGQELKAWQEKFFQKEQALSTLQLEHTSTQ HTSTQALVSELLPAKHLCQQLQAEQAAAEK K E Q A K H 3 0 0 0 0 3 3 0 1 0 6 1 0 0 1 3 3 0 0 1 0 0 25 0 2706.444 Q14980 Q14980 1340 1364 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 8.4494E-06 73.036 By MS/MS By MS/MS 1 0 2 1 1 45343000 0 4207500 41135000 3177 1327 3306 13011;13012 10631;10632 10631 2 0 2056500 8863200 EQDQRPLHPVANPHAEISTK WNIFSEASNSEPVNKEQDQRPLHPVANPHA PLHPVANPHAEISTKVPASKVKDAVEQQGE K E Q T K V 2 1 1 1 0 2 2 0 2 1 1 1 0 0 3 1 1 0 0 1 0 0 20 1 2266.1454 Q9NX58 Q9NX58 149 168 LYAR Cell growth-regulating nucleolar protein yes yes 3;4;5 3.7962E-14 132.13 By MS/MS By MS/MS 4.79 1.21 2 4 5 1 2 4 10 285420000 0 44799000 240620000 3178 2086 3307 13013;13014;13015;13016;13017;13018;13019;13020;13021;13022;13023;13024;13025;13026 10633;10634;10635;10636;10637;10638;10639;10640;10641 10634 9 0 11958000 36216000 EQELQQTLQQEQSVLDQLR LQAEEKAHAFAVQQKEQELQQTLQQEQSVL QQTLQQEQSVLDQLRGEAEAARRAAEEAEE K E Q L R G 0 1 0 1 0 7 3 0 0 0 4 0 0 0 0 1 1 0 0 1 0 0 19 0 2312.1608 Q15149 Q15149 2199 2217 PLEC Plectin yes yes 3 7.886E-11 160.55 By MS/MS 1 0 1 1 4225500 0 4225500 0 3179 1348 3308 13027 10642 10642 1 0 2065400 0 EQEMTEMR MAGERDKFRKMLDAKEQEMTEMRDVMQQQL RKMLDAKEQEMTEMRDVMQQQLAEYQELLD K E Q M R D 0 1 0 0 0 1 3 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 8 0 1052.4267 Q03252 Q03252 357 364 LMNB2 Lamin-B2 yes yes 2 0.0015125 114.78 By matching By MS/MS 3.75 0.829 2 1 1 1 3 79143000 0 5989900 73153000 3180 1156 3309 13028;13029;13030;13031 10643;10644 10643 2 0 2553500 13688000 EQEVNILK TLDSTAAQQELRSKREQEVNILKKTLEEEA QELRSKREQEVNILKKTLEEEAKTHEAQIQ R E Q L K K 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 971.52876 P35579 P35579 1166 1173 MYH9 Myosin-9 yes yes 2 0.011737 91.626 By MS/MS 1.5 0.5 1 1 2 251750000 0 251750000 0 3181 752 3310 13032;13033 10645 10645 1 0 122380000 0 EQFLDGDGWTSR GLLGLAVAEPAVYFKEQFLDGDGWTSRWIE YFKEQFLDGDGWTSRWIESKHKSDFGKFVL K E Q S R W 0 1 0 2 0 1 1 2 0 0 1 0 0 1 0 1 1 1 0 0 0 0 12 0 1409.6212 P27797 P27797 25 36 CALR Calreticulin yes yes 2 0.0010576 117.52 By matching By MS/MS 3.5 0.5 1 1 1 1 10420000 0 1142300 9277900 3182 682 3311 13034;13035 10646 10646 1 0 486970 1515400 EQGFLSFWR KQYKGIIDCVVRIPKEQGFLSFWRGNLANV VVRIPKEQGFLSFWRGNLANVIRYFPTQAL K E Q W R G 0 1 0 0 0 1 1 1 0 0 1 0 0 2 0 1 0 1 0 0 0 0 9 0 1168.5665 P12235 P12235 64 72 SLC25A4 ADP/ATP translocase 1 yes yes 2 0.0001253 142.19 By MS/MS 6.5 0.5 1 1 2 6124000 0 0 6124000 3183 533 3312 13036;13037 10647 10647 1 0 0 930890 EQGVLSFWR KQYKGIIDCVVRIPKEQGVLSFWRGNLANV VVRIPKEQGVLSFWRGNLANVIRYFPTQAL K E Q W R G 0 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 9 0 1120.5665 P05141;P12236 P05141 64 72 SLC25A5;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 2.1347E-16 175.38 By matching By MS/MS By MS/MS 6 2.86 2 1 2 2 1 1 1 1 2 7 172220000 625280 21322000 150280000 3184 427;534 3313 13038;13039;13040;13041;13042;13043;13044;13045;13046;13047 10648;10649;10650;10651;10652;10653;10654;10655 10652 8 625280 7697900 25087000 EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLKK TDMLHSKLSQLRESREQHQHSDLDSNQTHS VTSSSSTANIDDLKKRLERIKSSRK_____ R E Q K K R 1 0 2 4 0 3 1 1 3 1 2 2 0 0 0 8 4 0 0 1 0 0 33 1 3553.6153 Q14008 Q14008 1990 2022 CKAP5 Cytoskeleton-associated protein 5 yes yes 4;5 4.5736E-53 155.92 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 152790000 0 11283000 141510000 3185 1279 3314 13048;13049;13050;13051 10656;10657;10658;10659 10658 4 0 5514800 30589000 EQIMVLNNK LEVDPEIQRIKTQEREQIMVLNNKFASFID IKTQEREQIMVLNNKFASFIDKVRFLEQQN R E Q N K F 0 0 2 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 9 0 1087.5696 CON__Q7Z794;Q7Z794 CON__Q7Z794 166 174 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.00079468 112.17 By MS/MS 5.5 4.03 1 1 1 1 4 34586000 34586000 0 0 + 3186 95 3315 13052;13053;13054;13055 10660;10661;10662 10662 3 37982000 0 0 EQISDIDDAVR RKGISLNPEQWSQLKEQISDIDDAVRKL__ SQLKEQISDIDDAVRKL_____________ K E Q V R K 1 1 0 3 0 1 1 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1259.5994 P53999 P53999 115 125 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 1.2205E-09 168.74 By MS/MS By MS/MS 7.44 1.5 1 2 1 3 1 1 3 6 318900000 0 28157000 290740000 3187 926 3316 13056;13057;13058;13059;13060;13061;13062;13063;13064 10663;10664;10665;10666;10667;10668;10669 10668 6 0 9738200 154790000 EQITISQLSLVDLAGSER QAPLDADGDNVLQEKEQITISQLSLVDLAG TISQLSLVDLAGSERTNRTRAEGNRLREAG K E Q E R T 1 1 0 1 0 2 2 1 0 2 3 0 0 0 0 3 1 0 0 1 0 0 18 0 1958.032 Q02241 Q02241 326 343 KIF23 Kinesin-like protein KIF23 yes yes 2 1.8169E-05 105.19 By MS/MS 2 0 1 1 3010700 0 0 3010700 3188 1145 3317 13065 10670 10670 1 0 0 680360 EQIVPKPEEEVAQK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK KEQIVPKPEEEVAQKKKISQKKLKKQKLMA K E Q Q K K 1 0 0 0 0 2 4 0 0 1 0 2 0 0 2 0 0 0 0 2 0 0 14 1 1622.8516 P18621 P18621 154 167 RPL17 60S ribosomal protein L17 yes yes 2;3 5.4432E-25 206.1 By matching By MS/MS 7.12 0.927 2 4 1 1 2 6 815400000 0 19106000 796290000 3189 597 3318 13066;13067;13068;13069;13070;13071;13072;13073 10671;10672;10673;10674;10675;10676;10677 10675 7 0 10971000 140190000 EQIVPKPEEEVAQKK YMSSPCHIEMILTEKEQIVPKPEEEVAQKK EQIVPKPEEEVAQKKKISQKKLKKQKLMAR K E Q K K K 1 0 0 0 0 2 4 0 0 1 0 3 0 0 2 0 0 0 0 2 0 0 15 2 1750.9465 P18621 P18621 154 168 RPL17 60S ribosomal protein L17 yes yes 3 0.015091 60.209 By matching By MS/MS 7 0 2 1 1 37313000 0 3278200 34034000 3190 597 3319 13074;13075 10678 10678 1 0 1882400 6039200 EQIYDVYR LVLDEADEMLNKGFKEQIYDVYRYLPPATQ MLNKGFKEQIYDVYRYLPPATQVVLISATL K E Q Y R Y 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 2 1 0 0 8 0 1084.5189 P38919 P38919 199 206 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.026209 79.469 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 178230000 0 20366000 157870000 3191 775 3320 13076;13077;13078;13079;13080;13081 10679;10680;10681 10681 3 0 5620900 22404000 EQLAIAEFAR LSIYLENYATSMGSREQLAIAEFARSLLVI SMGSREQLAIAEFARSLLVIPNTLAVNAAQ R E Q A R S 3 1 0 0 0 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 10 0 1146.6033 P17987 P17987 434 443 TCP1 T-complex protein 1 subunit alpha yes yes 2 0.00034424 124.74 By matching By MS/MS By MS/MS 2.8 1.17 1 1 1 2 2 1 2 26100000 3725900 6936400 15437000 3192 591 3321 13082;13083;13084;13085;13086 10682;10683;10684 10682 3 4213000 2302000 2728800 EQLAQAMFDHIPVGVGSK LLRTNLDESDVQPVKEQLAQAMFDHIPVGV AQAMFDHIPVGVGSKGVIPMNAKDLEEALE K E Q S K G 2 0 0 1 0 2 1 2 1 1 1 1 1 1 1 1 0 0 0 2 0 0 18 0 1925.9669 Q9Y3I0 Q9Y3I0 141 158 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 0.00060913 74.519 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 36547000 0 11798000 24749000 3193 2276 3322 13087;13088;13089 10685;10686 10686 2 0 4054000 4042300 EQLDNQLDAYMSK RGRGRGALARPVLTKEQLDNQLDAYMSKTK TKEQLDNQLDAYMSKTKGHLDAELDAYMAQ K E Q S K T 1 0 1 2 0 2 1 0 0 0 2 1 1 0 0 1 0 0 1 0 0 0 13 0 1553.7032 Q9Y3Y2 Q9Y3Y2 214 226 CHTOP Chromatin target of PRMT1 protein yes yes 2 0.00027844 136.02 By MS/MS By MS/MS 6.4 0.49 3 2 1 4 99771000 0 10241000 89530000 3194 2280 3323;3324 13090;13091;13092;13093;13094 10687;10688;10689;10690 10688 737 4 0 3545100 13916000 EQLEEEEEAK STKLKQVEDEKNSFREQLEEEEEAKHNLEK KNSFREQLEEEEEAKHNLEKQIATLHAQVA R E Q A K H 1 0 0 0 0 1 6 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1232.5408 P35579 P35579 1343 1352 MYH9 Myosin-9 yes yes 2 2.7403E-05 151.44 By MS/MS By MS/MS 1 0 2 1 1 6566500 0 4724100 1842500 3195 752 3325 13095;13096 10691;10692 10691 2 0 2309100 396990 EQLEEEEEAKHNLEK STKLKQVEDEKNSFREQLEEEEEAKHNLEK EQLEEEEEAKHNLEKQIATLHAQVADMKKK R E Q E K Q 1 0 1 0 0 1 7 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 15 1 1853.8643 P35579 P35579 1343 1357 MYH9 Myosin-9 yes yes 2;3;4 1.7637E-06 167.71 By MS/MS By MS/MS 1.29 0.452 5 2 2 5 172040000 0 60560000 111480000 3196 752 3326 13097;13098;13099;13100;13101;13102;13103 10693;10694;10695;10696;10697;10698 10697 6 0 29601000 24094000 EQLELFQNIR LYVMDLSEQCGHGLREQLELFQNIRPLFIN GHGLREQLELFQNIRPLFINKPLIVVANKC R E Q I R P 0 1 1 0 0 2 2 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 10 0 1288.6776 Q9BZE4 Q9BZE4 267 276 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.00035553 138.54 By MS/MS 3.5 0.5 1 1 2 11815000 0 0 11815000 3197 1941 3327 13104;13105 10699 10699 1 0 0 2258300 EQLELFQNIRPLFINKPLIVVANK LYVMDLSEQCGHGLREQLELFQNIRPLFIN RPLFINKPLIVVANKCDVKRIAELSEDDQK R E Q N K C 1 1 3 0 0 2 2 0 0 3 4 2 0 2 2 0 0 0 0 2 0 0 24 2 2835.6375 Q9BZE4 Q9BZE4 267 290 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3;4 0.0001282 66.732 By MS/MS 3 0.707 1 2 1 4 60071000 0 0 60071000 3198 1941 3328 13106;13107;13108;13109 10700;10701 10701 2 0 0 11664000 EQLGEFYEALDCLR NWGLSVYADKPETTKEQLGEFYEALDCLRI KEQLGEFYEALDCLRIPKSDVVYTDWKKDK K E Q L R I 1 1 0 1 1 1 3 1 0 0 3 0 0 1 0 0 0 0 1 0 0 0 14 0 1741.7981 P02763 P02763 154 167 ORM1 Alpha-1-acid glycoprotein 1 yes yes 2 0.0029092 97.214 By MS/MS 9 0 1 1 3470600 3470600 0 0 3199 394 3329 13110 10702 10702 1 1948000 0 0 EQLGPVTQEFWDNLEK LDNWDTLASTLSKVREQLGPVTQEFWDNLE QLGPVTQEFWDNLEKETASLRQEMHKDLEE R E Q E K E 0 0 1 1 0 2 3 1 0 0 2 1 0 1 1 0 1 1 0 1 0 0 16 0 1931.9265 P02647;CON__P15497 CON__P15497 85 100 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I no no 2;3 6.7559E-13 182.07 By MS/MS By matching By MS/MS 6.5 2.11 2 1 1 2 2 2 3 1 6 213460000 24567000 495070 188400000 + 3200 59;389 3330 13111;13112;13113;13114;13115;13116;13117;13118;13119;13120 10703;10704;10705;10706;10707;10708;10709;10710;10711 10705 9 17221000 211050 34740000 EQLIIPQVPLFNILAK LTLDLPTAPLYKDEKEQLIIPQVPLFNILA QLIIPQVPLFNILAKFNGITEKEYKTYKEN K E Q A K F 1 0 1 0 0 2 1 0 0 3 3 1 0 1 2 0 0 0 0 1 0 0 16 0 1835.0921 Q53GS9 Q53GS9 406 421 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2;3 4.6835E-05 114.86 By MS/MS By MS/MS 3.12 0.781 2 3 3 4 4 124780000 0 19677000 105110000 3201 1426 3331 13121;13122;13123;13124;13125;13126;13127;13128 10712;10713;10714;10715;10716;10717;10718 10717 7 0 6890400 20282000 EQLLGVQQHLSNTLK EQRYMDLAENARFEREQLLGVQQHLSNTLK EQLLGVQQHLSNTLKMAEQDNKEAQEMIGA R E Q L K M 0 0 1 0 0 3 1 1 1 0 4 1 0 0 0 1 1 0 0 1 0 0 15 0 1706.9315 Q69YQ0 Q69YQ0 507 521 SPECC1L Cytospin-A yes yes 2 0.00043311 113.69 By MS/MS 2 0 1 1 5459600 0 0 5459600 3202 1469 3332 13129 10719 10719 1 0 0 1233800 EQLLMNALLYLR GKELEGKGQKACPTREQLLMNALLYLRSHV PTREQLLMNALLYLRSHVLCKGELDQRALQ R E Q L R S 1 1 1 0 0 1 1 0 0 0 5 0 1 0 0 0 0 0 1 0 0 0 12 0 1475.817 Q9NU22 Q9NU22 3496 3507 MDN1 Midasin yes yes 2 0.023654 82.287 By MS/MS 1 0 1 1 461670 0 0 461670 3203 2056 3333 13130 10720 10720 0 0 0 99473 EQLLQSNPVLEAFGNAK VAAVCGKGAEVNQVKEQLLQSNPVLEAFGN LLQSNPVLEAFGNAKTVRNDNSSRFGKYMD K E Q A K T 2 0 2 0 0 2 2 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 17 0 1856.9632 O43795;Q9UBC5 O43795 140 156 MYO1B;MYO1A Unconventional myosin-Ib;Unconventional myosin-Ia yes no 2 4.2283E-06 151.55 By MS/MS 2 0 1 1 5502500 0 0 5502500 3204 212 3334 13131 10721 10721 1 0 0 1243500 EQLMFPFHFVDR NGIDYQLYFPITQDREQLMFPFHFVDRLGK QDREQLMFPFHFVDRLGKHDVTCTVSGGGR R E Q D R L 0 1 0 1 0 1 1 0 1 0 1 0 1 3 1 0 0 0 0 1 0 0 12 0 1564.7497 P82933 P82933 311 322 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 2;3 3.2898E-05 150.04 By MS/MS 5 0 2 2 16986000 0 0 16986000 3205 1104 3335 13132;13133 10722;10723 10723 2 0 0 2369200 EQLMTVLQAGK SEEEERDGDVDQGFREQLMTVLQAGKALGG QGFREQLMTVLQAGKALGGEDSENEEELGD R E Q G K A 1 0 0 0 0 2 1 1 0 0 2 1 1 0 0 0 1 0 0 1 0 0 11 0 1216.6486 Q9BQG0 Q9BQG0 758 768 MYBBP1A Myb-binding protein 1A yes yes 2 0.0012636 111.65 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 45485000 0 9478700 36006000 3206 1885 3336 13134;13135;13136 10724;10725;10726 10726 3 0 4268400 8001900 EQLSLLDR SDELQLSMGNAMFVKEQLSLLDRFTEDAKR GNAMFVKEQLSLLDRFTEDAKRLYGSEAFA K E Q D R F 0 1 0 1 0 1 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 8 0 972.52401 P01011 P01011 145 152 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 0.0056944 98.997 By MS/MS 9 0 1 1 5259800 5259800 0 0 3207 368 3337 13137 10727 10727 1 2952400 0 0 EQLTEEAR IKGSLIITFDVDFPKEQLTEEAREGIKQLL FDVDFPKEQLTEEAREGIKQLLKQGSVQKV K E Q A R E 1 1 0 0 0 1 3 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 8 0 974.46689 Q9UBS4 Q9UBS4 329 336 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 2 0.050687 72.789 By MS/MS 5 0 1 1 2953800 0 2953800 0 3208 2134 3338 13138 10728 10728 1 0 761410 0 EQLTPSQIMSLEK RAEWQVYKEEISRFKEQLTPSQIMSLEKEI FKEQLTPSQIMSLEKEIMDKHLKRKAMTKK K E Q E K E 0 0 0 0 0 2 2 0 0 1 2 1 1 0 1 2 1 0 0 0 0 0 13 0 1502.765 Q00059 Q00059 119 131 TFAM Transcription factor A, mitochondrial yes yes 2 0.0009532 107.4 By matching By MS/MS 6.75 0.433 1 3 1 3 186960000 0 2730500 184230000 3209 1120 3339;3340 13139;13140;13141;13142 10729;10730;10731 10730 531 1 0 1567900 32425000 EQLWLANEGLITR EIQSSISGVTAAYNREQLWLANEGLITRLQ NREQLWLANEGLITRLQARCRGYLVRQEFR R E Q T R L 1 1 1 0 0 1 2 1 0 1 3 0 0 0 0 0 1 1 0 0 0 0 13 0 1541.8202 P46940 P46940 739 751 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 4.7502E-05 96.113 By MS/MS 1 0 1 1 0 0 0 0 3210 835 3341 13143 10732 10732 1 0 0 0 EQMIDLQNLLTTQSPSVK TPNNRPDAPKEKKKKEQMIDLQNLLTTQSP IDLQNLLTTQSPSVKSLAVPTIEELEDEEE K E Q V K S 0 0 1 1 0 3 1 0 0 1 3 1 1 0 1 2 2 0 0 1 0 0 18 0 2044.0511 Q9BVJ6 Q9BVJ6 556 573 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 6.1164E-12 164.92 By MS/MS 2 0 1 1 5261700 0 0 5261700 3211 1915 3342 13144 10733 10733 1 0 0 1189000 EQMQPTHPIR EASEAAYKEAFEISKEQMQPTHPIRLGLAL FEISKEQMQPTHPIRLGLALNFSVFYYEIQ K E Q I R L 0 1 0 0 0 2 1 0 1 1 0 0 1 0 2 0 1 0 0 0 0 0 10 0 1235.6081 Q04917 Q04917 163 172 YWHAH 14-3-3 protein eta yes yes 3 0.070259 38.75 By matching By MS/MS 7 0 2 1 1 4766400 0 1065900 3700600 3212 1162 3343 13145;13146 10734 10734 1 0 612020 656640 EQNKPDSSPLYIQNPFETSLNISK NFAFDKNSINIRQGREQNKPDSSPLYIQNP LYIQNPFETSLNISKNVSQSQLQKFVDLAR R E Q S K N 0 0 3 1 0 2 2 0 0 2 2 2 0 1 3 4 1 0 1 0 0 0 24 1 2748.3606 Q9NVV4 Q9NVV4 465 488 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 3 3.046E-15 112.45 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 28215000 0 8118100 20096000 3213 2072 3344 13147;13148;13149 10735;10736;10737 10735 3 0 2694100 3510700 EQPQQTVIADHSLSASHMETTMK PYLWVQKLGGLHFPKEQPQQTVIADHSLSA ADHSLSASHMETTMKLLKTRVQSRLALHKQ K E Q M K L 2 0 0 1 0 3 2 0 2 1 1 1 2 0 1 3 3 0 0 1 0 0 23 0 2568.1948 Q13769 Q13769 455 477 THOC5 THO complex subunit 5 homolog yes yes 3 0.00022099 66.3 By MS/MS 3 0 1 1 6465900 0 0 6465900 3214 1267 3345 13150 10738 10738 1 0 0 1254100 EQQAQVEKEDFSDMVAEHAAK LDPMAMTQKYEEHVREQQAQVEKEDFSDMV EKEDFSDMVAEHAAKQKQKKRKAQPQDSRG R E Q A K Q 4 0 0 2 0 3 4 0 1 0 0 2 1 1 0 1 0 0 0 2 0 0 21 1 2389.0856 Q13435 Q13435 850 870 SF3B2 Splicing factor 3B subunit 2 yes yes 3 3.7811E-11 110.67 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 43244000 0 4361800 38882000 3215 1248 3346 13151;13152;13153;13154 10739;10740 10740 2 0 1964200 8490200 EQQEAIEHIDEVQNEIDR EETSASAGLPKKGEKEQQEAIEHIDEVQNE EAIEHIDEVQNEIDRLNEQASEEILKVEQK K E Q D R L 1 1 1 2 0 3 5 0 1 3 0 0 0 0 0 0 0 0 0 1 0 0 18 0 2194.0138 Q01105;P0DME0 Q01105 40 57 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0 358.13 By MS/MS 6 0.816 1 1 1 3 20920000 0 0 20920000 3216 1130 3347 13155;13156;13157 10741 10741 1 0 0 3161500 EQQHLLASADTGR WRFLWEVGEAEAWVREQQHLLASADTGRDL VREQQHLLASADTGRDLTGALRLLNKHTAL R E Q G R D 2 1 0 1 0 2 1 1 1 0 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1424.7008 O15020 O15020 659 671 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.063277 39.033 By MS/MS 1 0 1 1 6176200 0 6176200 0 3217 160 3348 13158 10742 10742 1 0 3018900 0 EQQHVMEELFQSSFR QSPMLLELMTEVLCREQQHVMEELFQSSFR EQQHVMEELFQSSFRRIARRGSCVTQVGLL R E Q F R R 0 1 0 0 0 3 3 0 1 0 1 0 1 2 0 2 0 0 0 1 0 0 15 0 1893.8679 P78527 P78527 1769 1783 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.1358E-34 209.64 By MS/MS 1 0 2 2 13695000 0 0 13695000 3218 1089 3349 13159;13160 10743;10744 10743 2 0 0 2950700 EQQLPVNEETLFQK FEAEEKLAEWVLTQREQQLPVNEETLFQKA REQQLPVNEETLFQKATKIGRSLEGGFKIS R E Q Q K A 0 0 1 0 0 3 3 0 0 0 2 1 0 1 1 0 1 0 0 1 0 0 14 0 1701.8574 Q7Z3K3 Q7Z3K3 1040 1053 POGZ Pogo transposable element with ZNF domain yes yes 2 0.001622 105.46 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 24123000 3659100 6738500 13725000 3219 1530 3350 13161;13162;13163;13164;13165 10745;10746;10747;10748 10748 4 3659100 3134400 3041200 EQSIFGDHRDEEEETHMK KQQTLEAEEAKRRLKEQSIFGDHRDEEEET IFGDHRDEEEETHMKKSESEVEEAAAIIAQ K E Q M K K 0 1 0 2 0 1 5 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 18 1 2215.944 Q16643 Q16643 253 270 DBN1 Drebrin yes yes 3 0.054557 33.697 By MS/MS 2 0 1 1 4006400 0 0 4006400 3220 1395 3351 13166 10749 10749 1 0 0 905370 EQSQLTATQTR SQQRQQIAEIEKQTKEQSQLTATQTRTVNK KQTKEQSQLTATQTRTVNKHGDEIITSTTS K E Q T R T 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 1 3 0 0 0 0 0 11 0 1261.6262 Q6P2Q9 Q6P2Q9 2035 2045 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.010677 89.886 By MS/MS 1 0 1 1 4176400 0 4176400 0 3221 1490 3352 13167 10750 10750 1 0 2041400 0 EQTEGEYSSLEHESAR GYMTRHNNLDLVIIREQTEGEYSSLEHESA QTEGEYSSLEHESARGVIECLKIVTRAKSQ R E Q A R G 1 1 0 0 0 1 5 1 1 0 1 0 0 0 0 3 1 0 1 0 0 0 16 0 1850.7919 O43837 O43837 165 180 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes yes 3 0.00052623 87.148 By MS/MS 5.5 0.5 1 1 2 15533000 0 0 15533000 3222 216 3353 13168;13169 10751;10752 10751 2 0 0 2242000 EQTFSGGTSQDTK RPSQAAGDNQGDEAKEQTFSGGTSQDTKAS AKEQTFSGGTSQDTKASESSKPWPDATYGT K E Q T K A 0 0 0 1 0 2 1 2 0 0 0 1 0 1 0 2 3 0 0 0 0 0 13 0 1384.6107 Q9Y2W1 Q9Y2W1 203 215 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 1.9568E-07 169.58 By MS/MS By matching 2.5 0.5 1 1 1 1 12452000 0 8108200 4344100 3223 2252 3354 13170;13171 10753 10753 1 0 3651200 842560 EQTLHTPVMMQTPQLTSTIMR LTEESSSSDSMWLSREQTLHTPVMMQTPQL PVMMQTPQLTSTIMREPKRLRPEDSFMSVY R E Q M R E 0 1 0 0 0 3 1 0 1 1 2 0 3 0 2 1 5 0 0 1 0 0 21 0 2442.2069 Q8N3U4 Q8N3U4 1107 1127 STAG2 Cohesin subunit SA-2 yes yes 2;3 1.6962E-46 215.23 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 25325000 0 10058000 15267000 3224 1603 3355 13172;13173;13174 10754;10755;10756 10756 3 0 4529500 3362200 EQVANSAFVER KETQKSIYYITGESKEQVANSAFVERVRKR GESKEQVANSAFVERVRKRGFEVVYMTEPI K E Q E R V 2 1 1 0 0 1 2 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1248.6099 P08238;Q58FF7 P08238 492 502 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 1.3095E-54 179.1 By MS/MS By MS/MS By MS/MS 6.56 2.79 3 1 1 1 1 2 1 3 5 44411000 10584000 3144100 30682000 3225 469 3356 13175;13176;13177;13178;13179;13180;13181;13182;13183 10757;10758;10759;10760;10761;10762 10758 6 12212000 15907000 26185000 EQVIAALR YENMVTEIMSMGYEREQVIAALRASFNNPD MSMGYEREQVIAALRASFNNPDRAVEYLLM R E Q L R A 2 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 898.52362 P54727 P54727 205 212 RAD23B UV excision repair protein RAD23 homolog B yes yes 2 0.018784 85.265 By MS/MS 4 0 1 1 8583600 0 8583600 0 3226 931 3357 13184 10763 10763 1 0 2848600 0 EQVLEPMLNGTEK EISELPVRTWTQTYKEQVLEPMLNGTEKTP YKEQVLEPMLNGTEKTPPLITDYREYHTDT K E Q E K T 0 0 1 0 0 1 3 1 0 0 2 1 1 0 1 0 1 0 0 1 0 0 13 0 1486.7337 P11388 P11388 937 949 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.9797E-07 169.52 By MS/MS By MS/MS 1.5 0.5 3 3 4 2 90726000 0 20710000 70015000 3227 524 3358;3359 13185;13186;13187;13188;13189;13190 10764;10765;10766;10767;10768 10767 222 5 0 9751900 15245000 EQVNDLFSR DNERLSKVEKARQLREQVNDLFSRKFGEAI KARQLREQVNDLFSRKFGEAIGMGFPVKVP R E Q S R K 0 1 1 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 9 0 1106.5356 P78347;Q86UP8;Q6EKJ0 P78347 870 878 GTF2I;GTF2IRD2;GTF2IRD2B General transcription factor II-I;General transcription factor II-I repeat domain-containing protein 2A;General transcription factor II-I repeat domain-containing protein 2B yes no 2 0.0027952 102.46 By matching By MS/MS 2.5 0.5 1 1 1 1 7435600 0 1839500 5596100 3228 1085 3360 13191;13192 10769 10769 1 0 828330 1085400 EQVSPLETTLEK STEVQSLYREIKDAKEQVSPLETTLEKFQQ DAKEQVSPLETTLEKFQQEKEELINKKNTS K E Q E K F 0 0 0 0 0 1 3 0 0 0 2 1 0 0 1 1 2 0 0 1 0 0 12 0 1372.7086 Q92878 Q92878 910 921 RAD50 DNA repair protein RAD50 yes yes 2 0.032835 77.64 By MS/MS 1.5 0.5 1 1 2 20485000 0 0 20485000 3229 1726 3361 13193;13194 10770;10771 10770 1 0 0 4520000 EQVTNVGGAVVTGVTAVAQK EGVVHGVATVAEKTKEQVTNVGGAVVTGVT VGGAVVTGVTAVAQKTVEGAGSIAAATGFV K E Q Q K T 3 0 1 0 0 2 1 3 0 0 0 1 0 0 0 0 3 0 0 6 0 0 20 0 1927.0375 P37840 P37840 61 80 SNCA Alpha-synuclein yes yes 2;3 2.5519E-85 242.41 By MS/MS By MS/MS By MS/MS 6.52 2.96 6 4 6 6 8 6 6 9 11 17 25 24 30 49822000000 9797600000 7779800000 32244000000 3230 769 3362 13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215;13216;13217;13218;13219;13220;13221;13222;13223;13224;13225;13226;13227;13228;13229;13230;13231;13232;13233;13234;13235;13236;13237;13238;13239;13240;13241;13242;13243;13244;13245;13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256;13257;13258;13259;13260;13261;13262;13263;13264;13265;13266;13267;13268;13269;13270;13271;13272;13273 10772;10773;10774;10775;10776;10777;10778;10779;10780;10781;10782;10783;10784;10785;10786;10787;10788;10789;10790;10791;10792;10793;10794;10795;10796;10797;10798;10799;10800;10801;10802;10803;10804;10805;10806;10807;10808;10809;10810;10811;10812;10813;10814;10815;10816;10817;10818;10819;10820;10821;10822;10823;10824;10825;10826;10827;10828;10829;10830;10831;10832;10833;10834;10835;10836;10837;10838;10839;10840;10841;10842;10843;10844;10845;10846;10847;10848;10849;10850;10851;10852;10853;10854;10855;10856;10857;10858;10859;10860;10861;10862;10863;10864;10865;10866;10867;10868;10869;10870;10871;10872;10873;10874;10875;10876;10877;10878;10879;10880;10881;10882;10883;10884;10885;10886;10887;10888;10889;10890;10891;10892;10893;10894;10895;10896;10897;10898;10899;10900;10901;10902;10903;10904;10905;10906;10907;10908;10909;10910;10911;10912;10913;10914;10915;10916;10917;10918 10775 145 12820000000 24514000000 30904000000 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVK EGVVHGVATVAEKTKEQVTNVGGAVVTGVT VEGAGSIAAATGFVKKDQLGKNEEGAPQEG K E Q V K K 7 0 1 0 0 2 2 6 0 1 0 2 0 1 0 1 5 0 0 8 0 0 36 1 3386.8045 P37840 P37840 61 96 SNCA Alpha-synuclein yes yes 4 4.5314E-17 73.24 By MS/MS 8 0 1 1 1837300 0 0 1837300 3231 769 3363 13274 10919 10919 1 0 0 281670 EQWANLEQLSAIR HFGSEKIRERIIYIREQWANLEQLSAIRKK IREQWANLEQLSAIRKKRLEEASLLHQFQA R E Q I R K 2 1 1 0 0 2 2 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 13 0 1556.7947 Q01082 Q01082 724 736 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 2.1617E-17 192.38 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 53924000 937060 28273000 24714000 3232 1128 3364 13275;13276;13277;13278 10920;10921;10922 10920 3 937060 13729000 5325100 EQYEAMAER ATPGIDLTRVLAEMREQYEAMAERNRRDAE VLAEMREQYEAMAERNRRDAEEWFHTKSAE R E Q E R N 2 1 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 9 0 1125.4761 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 279 287 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.00051741 118.06 By MS/MS 1 0 1 1 46316000 46316000 0 0 + 3233 57;548 3365 13279 10923 10923 1 46316000 0 0 EQYGQYALAVR RNTGEIRTMNNFLDREQYGQYALAVRGSDR FLDREQYGQYALAVRGSDRDGGADGMSAEC R E Q V R G 2 1 0 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 2 1 0 0 11 0 1296.6463 Q02413 Q02413 228 238 DSG1 Desmoglein-1 yes yes 2 0.00063867 118.06 By MS/MS By MS/MS 5.64 3.14 1 2 1 1 1 2 1 2 7 4 88777000 71430000 0 17347000 3234 1146 3366 13280;13281;13282;13283;13284;13285;13286;13287;13288;13289;13290 10924;10925;10926;10927;10928 10927 5 84025000 0 11497000 EQYQQQQQWGSR NVGLSKCEIKVAMSKEQYQQQQQWGSRGGF MSKEQYQQQQQWGSRGGFAGRARGRGGGPS K E Q S R G 0 1 0 0 0 6 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 12 0 1564.7019 Q14103 Q14103 261 272 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 0.00050271 125.75 By MS/MS 5.5 0.5 1 1 2 4782700 0 4782700 0 3235 1281 3367 13291;13292 10929 10929 1 0 1446700 0 ERDQGGFGDRNEYGSR YKVQQACEMVMDILRERDQGGFGDRNEYGS RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG R E R S R I 0 3 1 2 0 1 2 4 0 0 0 0 0 1 0 1 0 0 1 0 0 0 16 2 1841.8041 Q92945 Q92945 305 320 KHSRP Far upstream element-binding protein 2 yes yes 4 0.054321 39.338 By MS/MS By matching 2.5 0.5 1 1 1 1 4815200 0 2459900 2355200 3236 1733 3368 13293;13294 10930 10930 1 0 1107700 456810 ERDREPYFDR TFETEHAGQRDRYDRERDREPYFDRQSNVI DRYDRERDREPYFDRQSNVIADHRDFKRDR R E R D R Q 0 3 0 2 0 0 2 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 10 2 1381.6375 P49750 P49750 1689 1698 YLPM1 YLP motif-containing protein 1 yes yes 3 0.0052992 84.687 By MS/MS 1 0 1 1 2843900 0 0 2843900 3237 865 3369 13295 10931 10931 1 0 0 612770 EREHLEMELEK ERLRSENKDIENLRREREHLEMELEKAEME NLRREREHLEMELEKAEMERSTYVTEVREL R E R E K A 0 1 0 0 0 0 5 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 11 1 1441.6871 Q86UP2 Q86UP2 1205 1215 KTN1 Kinectin yes yes 3 0.021958 65.043 By MS/MS 1.5 0.5 1 1 2 19183000 0 0 19183000 3238 1549 3370 13296;13297 10932 10932 1 0 0 4242900 ERENLRQEIEK NRTLELQGLINDLQRERENLRQEIEKFQKQ DLQRERENLRQEIEKFQKQALEASNRIQES R E R E K F 0 2 1 0 0 1 4 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 2 1442.7478 P15924 P15924 1776 1786 DSP Desmoplakin yes yes 3 0.030662 64.64 By MS/MS By MS/MS By matching 7 3.54 1 1 1 1 2 1 1 6047200 4272900 1722700 51613 3239 572 3371 13298;13299;13300;13301 10933;10934 10934 2 3022100 842030 112880 EREVDEDSEPER REAPASVVPFVRVKREREVDEDSEPEREVR VKREREVDEDSEPEREVRAKNGRVDSEDRR R E R E R E 0 2 0 2 0 0 5 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 12 1 1488.6328 Q53GS9 Q53GS9 75 86 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2;3 8.2363E-05 128.68 By MS/MS 3 0 2 2 5620200 0 0 5620200 3240 1426 3372 13302;13303 10935;10936 10935 2 0 0 1090100 ERFEMFR KPLDGEYFTLQIRGRERFEMFRELNEALEL FTLQIRGRERFEMFRELNEALELKDAQAGK R E R F R E 0 2 0 0 0 0 2 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 7 1 1013.4753 P04637 P04637 336 342 TP53 Cellular tumor antigen p53 yes yes 2 0.052362 125.5 By MS/MS 5 0 1 1 13953000 0 0 13953000 3241 416 3373 13304 10937 10937 1 0 0 1946100 ERGACEATEEAR LTITEDGQGLKGVKRERGACEATEEARNLA VKRERGACEATEEARNLAFSLMTRHRPECI R E R A R N 3 2 0 0 1 0 4 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 12 1 1377.5943 P03243 P03243 106 117 yes yes 3 0.025869 61.423 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 2097600 0 1434700 662920 3242 406 3374 13305;13306;13307;13308 10938;10939 10938 2 0 369820 124740 ERHPGSFDVVHVK TGGANLGRIGVITNRERHPGSFDVVHVKDA NRERHPGSFDVVHVKDANGNSFATRLSNIF R E R V K D 0 1 0 1 0 0 1 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 13 1 1505.7739 P62701;P22090 P62701 199 211 RPS4X;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 2;3 0.00014706 124.67 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 95296000 0 27889000 67407000 3243 1029 3375 13309;13310;13311;13312 10940;10941;10942;10943 10941 4 0 9654300 10085000 ERIDFLPHYDTLVK YLLQSVNQLLLTATKERIDFLPHYDTLVKS KERIDFLPHYDTLVKSGMYEYYASEGQNPL K E R V K S 0 1 0 2 0 0 1 0 1 1 2 1 0 1 1 0 1 0 1 1 0 0 14 1 1744.9148 A6NHR9 A6NHR9 113 126 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3;4 0.037891 46.318 By MS/MS 1 0 2 2 10352000 0 0 10352000 3244 15 3376 13313;13314 10944;10945 10944 2 0 0 2230400 ERLEQQVPVNQVFGQDEMIDVIGVTK QVNGGTVAEKLDWARERLEQQVPVNQVFGQ VFGQDEMIDVIGVTKGKGYKGVTSRWHTKK R E R T K G 0 1 1 2 0 4 3 2 0 2 1 1 1 1 1 0 1 0 0 5 0 0 26 1 2970.5121 P39023 P39023 199 224 RPL3 60S ribosomal protein L3 yes yes 3 8.3469E-29 139 By MS/MS By MS/MS 4.75 0.433 1 3 2 2 62821000 0 27196000 35625000 3245 778 3377;3378 13315;13316;13317;13318 10946;10947;10948;10949 10949 388 4 0 7010300 5222800 ERNTDQASMPDNTAAQK VISGVLQLGNIVFKKERNTDQASMPDNTAA NTDQASMPDNTAAQKVSHLLGINVTDFTRG K E R Q K V 3 1 2 2 0 2 1 0 0 0 0 1 1 0 1 1 2 0 0 0 0 0 17 1 1875.8381 P35579 P35579 357 373 MYH9 Myosin-9 no no 3 0.0039751 63.691 By MS/MS 1 0 1 1 2951000 0 2951000 0 3246 752 3379 13319 10950 10950 1 0 1442400 0 ERPPNPIEFLASYLLK TVVPILLQGLAVLAKERPPNPIEFLASYLL RPPNPIEFLASYLLKNKAQFEDRN______ K E R L K N 1 1 1 0 0 0 2 0 0 1 3 1 0 1 3 1 0 0 1 0 0 0 16 1 1886.0302 Q9C005 Q9C005 75 90 DPY30 Protein dpy-30 homolog yes yes 2;3 0.00014421 149.69 By MS/MS 8 0 2 2 47007000 0 0 47007000 3247 1948 3380 13320;13321 10951;10952;10953 10952 3 0 0 7206700 ERPQDRPEDLDVPPALADFIHQQR NAQKPLPQALSKERRERPQDRPEDLDVPPA LDVPPALADFIHQQRTQQVEQDMFAHPYQY R E R Q R T 2 3 0 4 0 3 2 0 1 1 2 0 0 1 4 0 0 0 0 1 0 0 24 2 2841.4158 Q01780 Q01780 222 245 EXOSC10 Exosome component 10 yes yes 4;5 2.2628E-16 120.64 By MS/MS 2 0 2 2 9454100 0 0 9454100 3248 1138 3381 13322;13323 10954;10955 10954 1 0 0 2136400 ERSGVSLAALK PPVSELITKAVAASKERSGVSLAALKKALA AASKERSGVSLAALKKALAAAGYDVEKNNS K E R L K K 2 1 0 0 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 1 1129.6455 P10412;P16402;P16403 P16403 53 63 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.0020328 134.57 By MS/MS By matching 6 0 2 1 1 29282000 0 20507000 8775000 3249 509;578;577 3382 13324;13325 10956 10956 1 0 7098700 1312800 ERSGVSLAALKK PPVSELITKAVAASKERSGVSLAALKKALA ASKERSGVSLAALKKALAAAGYDVEKNNSR K E R K K A 2 1 0 0 0 0 1 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 12 2 1257.7405 P10412;P16402;P16403 P16403 53 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3 0.0036419 91.62 By MS/MS 6 0 1 1 49783000 0 49783000 0 3250 509;578;577 3383 13326 10957 10957 1 0 17233000 0 ERTEEPMETEPK EPPEGEEKVEKAEVKERTEEPMETEPKGAA EVKERTEEPMETEPKGAADVEKVEEKSAID K E R P K G 0 1 0 0 0 0 5 0 0 0 0 1 1 0 2 0 2 0 0 0 0 0 12 1 1474.661 Q14839 Q14839 1625 1636 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.023637 62.891 By MS/MS By matching 2 0.816 1 1 1 2 1 4830500 0 2488900 2341600 3251 1321 3384 13327;13328;13329 10958 10958 1 0 1169400 454150 ERYPTFIDALR LKDNKPNYKLDHIIKERYPTFIDALRDLDD HIIKERYPTFIDALRDLDDALSMCFLFSTF K E R L R D 1 2 0 1 0 0 1 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 11 1 1379.7197 O00541 O00541 122 132 PES1 Pescadillo homolog yes yes 2 0.069555 93.166 By matching By MS/MS 2.5 0.5 1 1 1 1 19248000 13856000 0 5391500 3252 127 3385 13330;13331 10959 10959 1 16695000 0 1045700 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR AATVASATGDSASERESAAPAAAPTAEAPP VTRPEPQALPSPAIRAPLPDLYPFGTMRGG R E S I R A 9 2 0 0 0 1 3 0 0 1 1 0 0 0 9 3 2 0 0 2 0 0 33 1 3245.7044 Q92841 Q92841 36 68 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 3;4 1.3646E-49 139.19 By MS/MS By MS/MS 3.71 2.25 2 3 1 1 5 2 94142000 0 72746000 21396000 3253 1725 3386 13332;13333;13334;13335;13336;13337;13338 10960;10961;10962;10963;10964;10965;10966;10967;10968 10962 9 0 31390000 4279400 ESADPLGAWLQDAR QRELEQLGRQLRYYRESADPLGAWLQDARR RESADPLGAWLQDARRRQEQIQAMPLADSQ R E S A R R 3 1 0 2 0 1 1 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 14 0 1527.7318 Q15149 Q15149 1351 1364 PLEC Plectin yes yes 2 0.00037443 132.32 By MS/MS 1 0 1 1 6074900 0 6074900 0 3254 1348 3387 13339 10969 10969 1 0 2969300 0 ESALFSTELSVLHNFFSPSPK GDEVSPLLKQYILEKESALFSTELSVLHNF TELSVLHNFFSPSPKTRRQGEVVQRLTRMV K E S P K T 1 0 1 0 0 0 2 0 1 0 3 1 0 3 2 5 1 0 0 1 0 0 21 0 2336.1689 Q8WX92 Q8WX92 173 193 NELFB Negative elongation factor B yes yes 3 0.00079539 63.578 By MS/MS 3 0 1 1 4158200 0 0 4158200 3255 1692 3388 13340 10970 10970 1 0 0 806500 ESATADAGYAILEK NSFQPISSLRDDERRESATADAGYAILEKK RESATADAGYAILEKKGALAERQHTSMDLP R E S E K K 4 0 0 1 0 0 2 1 0 1 1 1 0 0 0 1 1 0 1 0 0 0 14 0 1437.6987 P98175 P98175 686 699 RBM10 RNA-binding protein 10 yes yes 2 0.074064 59.57 By matching By MS/MS 2 0 2 1 1 12359000 3028300 0 9330400 3256 1117 3389 13341;13342 10971 10971 1 3648800 0 2108500 ESDLNGAQIK CKAEHDQLLLNYAKKESDLNGAQIKLREYE NYAKKESDLNGAQIKLREYEAALNSKDAAL K E S I K L 1 0 1 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1073.5353 P20700 P20700 125 134 LMNB1 Lamin-B1 yes yes 2 0.002048 107.01 By MS/MS 4 0.816 1 1 1 3 141770000 0 0 141770000 3257 619 3390 13343;13344;13345 10972;10973 10972 2 0 0 26711000 ESDLPSAILQTSGVSEFTK GRDRKKDKQHLKRKKESDLPSAILQTSGVS PSAILQTSGVSEFTKKRSKLVLPAPQISDA K E S T K K 1 0 0 1 0 1 2 1 0 1 2 1 0 1 1 4 2 0 0 1 0 0 19 0 2008.0001 Q99459 Q99459 272 290 CDC5L Cell division cycle 5-like protein yes yes 2 4.7428E-23 190.37 By MS/MS 2.5 0.5 1 1 2 20674000 0 0 20674000 3258 1843 3391 13346;13347 10974 10974 1 0 0 4405200 ESEAVEWQQK LTARISQLEMARQKKESEAVEWQQKAQMVQ ARQKKESEAVEWQQKAQMVQEDLEKTRAEL K E S Q K A 1 0 0 0 0 2 3 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 10 0 1232.5673 P26038 P26038 439 448 MSN Moesin yes yes 2 0.061054 69.954 By MS/MS 3 0 1 1 13551000 0 0 13551000 3259 664 3392 13348 10975 10975 1 0 0 2628300 ESEFDDEPK EEMDDQDKDKAKGRKESEFDDEPKFMSKVI KAKGRKESEFDDEPKFMSKVIGANKNQEEE K E S P K F 0 0 0 2 0 0 3 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 9 0 1094.4404 Q9Y2W1 Q9Y2W1 443 451 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.019697 82.426 By MS/MS 2 0 1 1 3136500 0 3136500 0 3260 2252 3393 13349 10976 10976 1 0 1412400 0 ESEITDEDIDGILER LQMIRHGATHVFASKESEITDEDIDGILER ESEITDEDIDGILERGAKKTAEMNEKLSKM K E S E R G 0 1 0 3 0 0 4 1 0 3 1 0 0 0 0 1 1 0 0 0 0 0 15 0 1732.8003 O60264 O60264 666 680 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 4.7129E-25 199.8 By MS/MS 1.67 0.471 1 2 3 61993000 0 0 61993000 3261 223 3394 13350;13351;13352 10977;10978;10979 10978 2 0 0 13917000 ESEKLESVNAELK KCRNKKKEKTECLQKESEKLESVNAELKAQ QKESEKLESVNAELKAQIEELKNEKQHLIY K E S L K A 1 0 1 0 0 0 4 0 0 0 2 2 0 0 0 2 0 0 0 1 0 0 13 1 1474.7515 P18847 P18847 117 129 ATF3 Cyclic AMP-dependent transcription factor ATF-3 yes yes 2 0.047689 97.163 By MS/MS 7 0 1 1 6589100 0 0 6589100 3262 602 3395 13353 10980 10980 1 0 0 1169200 ESESVDKVMDQK PITGRSRGFGFVLFKESESVDKVMDQKEHK LFKESESVDKVMDQKEHKLNGKVIDPKRAK K E S Q K E 0 0 0 2 0 1 2 0 0 0 0 2 1 0 0 2 0 0 0 2 0 0 12 1 1393.6395 Q14103 Q14103 147 158 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2;3 0.00059146 141.88 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 30003000 0 16407000 13596000 3263 1281 3396 13354;13355;13356;13357 10981;10982;10983 10981 3 0 4464400 1896400 ESESVDKVMDQKEHK PITGRSRGFGFVLFKESESVDKVMDQKEHK ESESVDKVMDQKEHKLNGKVIDPKRAKAMK K E S H K L 0 0 0 2 0 1 3 0 1 0 0 3 1 0 0 2 0 0 0 2 0 0 15 2 1787.836 Q14103 Q14103 147 161 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 3 0.0029869 76.759 By MS/MS 5.5 0.5 1 1 2 3231400 0 3231400 0 3264 1281 3397 13358;13359 10984;10985 10985 2 0 1019800 0 ESFDGSVR FVKGLSEDTTEETLKESFDGSVRARIVTDR TTEETLKESFDGSVRARIVTDRETGSSKGF K E S V R A 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 2 0 0 0 1 0 0 8 0 895.40356 P19338 P19338 590 597 NCL Nucleolin yes yes 2 0.0079951 96.19 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 40629000 0 13376000 27252000 3265 604 3398 13360;13361;13362;13363 10986;10987;10988 10986 3 0 5802700 5163800 ESGMNLNPEVEGTLIR ASFPECTAAAIKAIRESGMNLNPEVEGTLI SGMNLNPEVEGTLIRVPIPQVTREHREMLV R E S I R V 0 1 2 0 0 0 3 2 0 1 2 0 1 0 1 1 1 0 0 1 0 0 16 0 1757.8618 Q96E11 Q96E11 164 179 MRRF Ribosome-recycling factor, mitochondrial yes yes 2 0.05616 54.7 By MS/MS 7 0 1 1 1465000 0 1465000 0 3266 1770 3399 13364 10989 10989 1 0 841200 0 ESHLLNDEDLTQAK NIFNKSKCQNCFKPRESHLLNDEDLTQAKP RESHLLNDEDLTQAKPIYGGWLLLAPDGTD R E S A K P 1 0 1 2 0 1 2 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1611.774 Q6WCQ1 Q6WCQ1 30 43 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.011918 61.409 By MS/MS 2 0 1 1 7865500 0 0 7865500 3267 1507 3400 13365 10990 10990 1 0 0 1777400 ESHRLPVDIAYK LLEAQIATGGIIDPKESHRLPVDIAYKRGY DPKESHRLPVDIAYKRGYFNEELSEILSDP K E S Y K R 1 1 0 1 0 0 1 0 1 1 1 1 0 0 1 1 0 0 1 1 0 0 12 1 1426.7569 P15924 P15924 2382 2393 DSP Desmoplakin yes yes 3 0.0023258 94.122 By MS/MS 8.5 1.12 1 1 1 1 4 19901000 19901000 0 0 3268 572 3401 13366;13367;13368;13369 10991 10991 1 25036000 0 0 ESIEEPSAK LELQKLLERVPIPVKESIEEPSAKINVLLQ VPIPVKESIEEPSAKINVLLQAFISQLKLE K E S A K I 1 0 0 0 0 0 3 0 0 1 0 1 0 0 1 2 0 0 0 0 0 0 9 0 988.47131 O75643 O75643 1050 1058 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.057219 69.423 By MS/MS 1 0 1 1 3080400 0 3080400 0 3269 277 3402 13370 10992 10992 1 0 1505700 0 ESLEALLQR VWLRAAYFEKNHGTRESLEALLQRAVAHCP KNHGTRESLEALLQRAVAHCPKAEVLWLMG R E S Q R A 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1057.5768 O94906 O94906 591 599 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 3.6645E-05 149.4 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 39982000 0 8881900 31100000 3270 305 3403 13371;13372;13373;13374 10993;10994;10995;10996 10993 4 0 3999600 6717600 ESLLSSASLSQVFLHLSTLDR SDSGRSYKTVLDRWRESLLSSASLSQVFLH ASLSQVFLHLSTLDRSVIWSKSILNARCKI R E S D R S 1 1 0 1 0 1 1 0 1 0 6 0 0 1 0 6 1 0 0 1 0 0 21 0 2302.2169 Q9NRL2 Q9NRL2 1118 1138 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 7.0569E-15 151.87 By MS/MS 1 0 1 1 4440900 0 0 4440900 3271 2045 3404 13375 10997 10997 1 0 0 956870 ESLSEEEAQK QKTFEEKLTPLLSVRESLSEEEAQKMGRKD LLSVRESLSEEEAQKMGRKDPEQEVEKFVT R E S Q K M 1 0 0 0 0 1 4 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1148.5197 Q9BXP5 Q9BXP5 678 687 SRRT Serrate RNA effector molecule homolog yes yes 2 0.00021042 120.87 By MS/MS 2 0 1 1 6651200 0 6651200 0 3272 1929 3405 13376 10998 10998 1 0 2995100 0 ESMAGNKPANAVLHK AEVECLAESHQHLSKESMAGNKPANAVLHK ESMAGNKPANAVLHKVLKQLEELLSDMKAD K E S H K V 3 0 2 0 0 0 1 1 1 0 1 2 1 0 1 1 0 0 0 1 0 0 15 1 1565.7984 Q14839 Q14839 1838 1852 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.065932 38.44 By MS/MS 1 0 1 1 7540400 0 7540400 0 3273 1321 3406 13377 10999 10999 1 0 3685700 0 ESRYEEEEEQSR KDWDELEEEARKADRESRYEEEEEQSRSMS ADRESRYEEEEEQSRSMSRKRKASVHSSGR R E S S R S 0 2 0 0 0 1 6 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 12 1 1569.6543 Q9Y5B9 Q9Y5B9 1003 1014 SUPT16H FACT complex subunit SPT16 yes yes 3 0.0053535 82.543 By MS/MS 1.5 0.5 1 1 2 1220000 0 0 1220000 3274 2296 3407 13378;13379 11000 11000 1 0 0 265060 ESSEAQVQKFLSRSVEDVR EHNQLEAHPKADFIRESSEAQVQKFLSRSV AQVQKFLSRSVEDVRPHHTDANNQSACFEA R E S V R P 1 2 0 1 0 2 3 0 0 0 1 1 0 1 0 4 0 0 0 3 0 0 19 2 2193.1026 Q9Y520 Q9Y520 865 883 PRRC2C Protein PRRC2C yes yes 3 0.015267 47.568 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 1 4 59444000 0 6502200 52942000 3275 2293 3408 13380;13381;13382;13383;13384 11001;11002;11003 11001 3 0 2928000 10340000 ESSLMLLDQGLDPLGYEIQL VFSKEELRKLLQKLRESSLMLLDQGLDPLG LLDQGLDPLGYEIQL_______________ R E S Q L - 0 0 0 2 0 2 2 2 0 1 6 0 1 0 1 2 0 0 1 0 0 0 20 0 2233.1188 P57740 P57740 906 925 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.033189 48.568 By MS/MS 2 0 1 1 7205100 0 0 7205100 3276 956 3409 13385 11004 11004 1 0 0 1628200 ESSNVVVTER PSSSLPTSLTIHHPRESSNVVVTERVIQPT IHHPRESSNVVVTERVIQPTSGMIGSLSMH R E S E R V 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 1 0 0 3 0 0 10 0 1118.5568 Q02413 Q02413 916 925 DSG1 Desmoglein-1 yes yes 2 0.00033207 139.02 By MS/MS 1.5 0.5 1 1 2 9234000 9234000 0 0 3277 1146 3410 13386;13387 11005 11005 1 9484700 0 0 ESSPLYSPTFSDSTSAVK EKLSPKSDISPLTPRESSPLYSPTFSDSTS PLYSPTFSDSTSAVKEKTATCHSSSSPPID R E S V K E 1 0 0 1 0 0 1 0 0 0 1 1 0 1 2 6 2 0 1 1 0 0 18 0 1901.8895 P46821 P46821 1791 1808 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00030965 68.044 By MS/MS 1 0 1 1 0 0 0 0 3278 834 3411 13388 11006 11006 1 0 0 0 ESSTVFELK LMIRRHKTTIFTDAKESSTVFELKRIVEGI IFTDAKESSTVFELKRIVEGILKRPPDEQR K E S L K R 0 0 0 0 0 0 2 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 9 0 1038.5233 Q15370 Q15370 20 28 TCEB2 Transcription elongation factor B polypeptide 2 yes yes 2 0.026351 78.334 By matching By MS/MS 8 0 2 1 1 13855000 0 915200 12940000 3279 1359 3412 13389;13390 11007 11007 1 0 416380 1983900 ESTGAQVQVAGDMLPNSTER GSLIGKGGCKIKEIRESTGAQVQVAGDMLP QVQVAGDMLPNSTERAITIAGIPQSIIECV R E S E R A 2 1 1 1 0 2 2 2 0 0 1 0 1 0 1 2 2 0 0 2 0 0 20 0 2088.9746 Q15366;P57721;Q15365 Q15366 125 144 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 2 1.147E-102 258.39 By MS/MS By MS/MS 5.86 0.639 2 4 1 2 5 93518000 0 17666000 75851000 3280 1357;1356 3413;3414 13391;13392;13393;13394;13395;13396;13397 11008;11009;11010;11011;11012;11013;11014;11015;11016 11014 622 9 0 6115500 11219000 ESTLHLVLR QLEDGRTLSDYNIQKESTLHLVLRLRGGII DYNIQKESTLHLVLRLRGGIIEPSLRQLAQ K E S L R L 0 1 0 0 0 0 1 0 1 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 1066.6135 P62987;P62979;P0CG47;P0CG48 P62987 64 72 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 3.5368E-80 242.52 By MS/MS By MS/MS By MS/MS 5.33 2.94 3 3 3 3 2 3 3 1 3 3 8 9 10 3522000000 531440000 854590000 2136000000 3281 500 3415 13398;13399;13400;13401;13402;13403;13404;13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421;13422;13423;13424 11017;11018;11019;11020;11021;11022;11023;11024;11025;11026;11027;11028;11029;11030;11031;11032;11033;11034;11035;11036;11037;11038;11039;11040;11041;11042;11043;11044;11045;11046;11047;11048;11049 11032 33 744150000 1099100000 610350000 ESTVFEDLSDEAER FKCLRDGAGDVAFIRESTVFEDLSDEAERD RESTVFEDLSDEAERDEYELLCPDNTRKPV R E S E R D 1 1 0 2 0 0 4 0 0 0 1 0 0 1 0 2 1 0 0 1 0 0 14 0 1625.7057 P02788 P02788 230 243 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 1.5673E-11 180.88 By MS/MS 6 2.16 1 1 1 3 19660000 19660000 0 0 3282 400 3416 13425;13426;13427 11050;11051 11050 2 15089000 0 0 ESVFFAEPPFK VSSPRSITSTPLSGKESVFFAEPPFKAEIS LSGKESVFFAEPPFKAEISSIRENKDRLSD K E S F K A 1 0 0 0 0 0 2 0 0 0 0 1 0 3 2 1 0 0 0 1 0 0 11 0 1296.639 Q9P0K7 Q9P0K7 303 313 RAI14 Ankycorbin yes yes 2 0.049264 73.985 By MS/MS 2 0 1 1 2367400 0 2367400 0 3283 2115 3417 13428 11052 11052 1 0 1066100 0 ESVFTVEGGHR LKLLLGAGAVAYGVRESVFTVEGGHRAIFF YGVRESVFTVEGGHRAIFFNRIGGVQQDTI R E S H R A 0 1 0 0 0 0 2 2 1 0 0 0 0 1 0 1 1 0 0 2 0 0 11 0 1216.5836 Q99623 Q99623 38 48 PHB2 Prohibitin-2 yes yes 2;3 0.00032742 123.86 By MS/MS By MS/MS 6 0 4 2 2 19202000 0 5123900 14078000 3284 1855 3418 13429;13430;13431;13432 11053;11054;11055 11054 3 0 1773700 2106200 ESVLTATSILNNPIVK DHIKGKQAYKEQIKRESVLTATSILNNPIV SVLTATSILNNPIVKARYERFVKGENPFEI R E S V K A 1 0 2 0 0 0 1 0 0 2 2 1 0 0 1 2 2 0 0 2 0 0 16 0 1697.9564 Q5BKZ1 Q5BKZ1 444 459 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 2.7983E-60 237.36 By MS/MS By MS/MS By MS/MS 3.86 0.833 3 2 2 1 3 3 71413000 4178900 31211000 36023000 3285 1434 3419 13433;13434;13435;13436;13437;13438;13439 11056;11057;11058;11059;11060 11057 5 4821600 12320000 6822600 ESVQQAIASGITAQQIIHFLR MLYRFPNMVVAQVTRESVQQAIASGITAQQ IASGITAQQIIHFLRTRAHPVMLKQTPVLP R E S L R T 3 1 0 0 0 4 1 1 1 4 1 0 0 1 0 2 1 0 0 1 0 0 21 0 2309.2492 Q92759 Q92759 349 369 GTF2H4 General transcription factor IIH subunit 4 yes yes 3 1.2937E-06 94.057 By MS/MS 5 0 1 1 2661100 0 2661100 0 3286 1720 3420 13440 11061 11061 1 0 685950 0 ESYDDVSSFR FGFGGKKKGSKWNTRESYDDVSSFRAKTAH KWNTRESYDDVSSFRAKTAHGRGLKRPGKK R E S F R A 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 3 0 0 1 1 0 0 10 0 1203.5044 Q99848 Q99848 263 272 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2 0.0004516 117.81 By MS/MS 5 0 1 1 50947000 0 0 50947000 3287 1866 3421 13441 11062 11062 1 0 0 7106200 ESYSALMR GFDWSDRNTNMTAKKESYSALMRELELKEK TNMTAKKESYSALMRELELKEKKIKELQNA K E S M R E 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 1 0 0 0 8 0 955.44332 Q15149 Q15149 793 800 PLEC Plectin yes yes 2 0.066848 68.787 By MS/MS 1 0 1 1 5795200 0 5795200 0 3288 1348 3422 13442 11063 11063 1 0 2832600 0 ESYSIYVYK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH RKRSRKESYSIYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 3 1 0 0 9 0 1150.5546 P06899;Q16778;P33778;P23527;Q8N257;Q6DRA6;Q6DN03 P06899 36 44 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 2 0.0054438 96.253 By MS/MS By MS/MS By MS/MS 8.33 0.943 1 3 1 1 2 3 1 2780700000 132550000 938050000 1710100000 3289 451;644;1601;1472 3423 13443;13444;13445;13446;13447;13448 11064;11065;11066;11067;11068;11069 11064 6 109800000 592710000 262170000 ESYSIYVYKVLK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH SRKESYSIYVYKVLKQVHPDTGISSKAMGI K E S L K Q 0 0 0 0 0 0 1 0 0 1 1 2 0 0 0 2 0 0 3 2 0 0 12 1 1490.8021 P06899;Q16778;P33778;P23527;Q8N257;Q6DRA6;Q6DN03 P06899 36 47 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 2 0.0093503 115.82 By MS/MS 8 0 1 1 9828900 0 9828900 0 3290 451;644;1601;1472 3424 13449 11070 11070 1 0 4471800 0 ESYSIYVYKVLKQVHPDTGISSK KAQKKDGKKRKRSRKESYSIYVYKVLKQVH KVLKQVHPDTGISSKAMGIMNSFVNDIFER K E S S K A 0 0 0 1 0 1 1 1 1 2 1 3 0 0 1 4 1 0 3 3 0 0 23 2 2640.3799 P06899;Q16778;P33778;P23527;Q8N257 P06899 36 58 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B no no 3;4 5.4062E-11 99.999 By matching By MS/MS 8 0 3 1 2 19209000 0 2251200 16958000 3291 451;644;1601 3425 13450;13451;13452 11071;11072 11071 2 0 1024200 2599800 ESYSVYVYK KAQKKDGRKRKRSRKESYSVYVYKVLKQVH RKRSRKESYSVYVYKVLKQVHPDTGISSKA K E S Y K V 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 3 2 0 0 9 0 1136.539 P57053;O60814 P57053 36 44 H2BFS;HIST1H2BK Histone H2B type F-S;Histone H2B type 1-K no no 1;2 0.0032888 123.98 By MS/MS By MS/MS By MS/MS 6.8 2.56 1 1 1 1 1 2 3 5 2 3 3 5 12 9208300000 255110000 2012400000 6940800000 3292 953 3426 13453;13454;13455;13456;13457;13458;13459;13460;13461;13462;13463;13464;13465;13466;13467;13468;13469;13470;13471;13472 11073;11074;11075;11076;11077;11078;11079;11080;11081;11082;11083;11084;11085 11080 13 226230000 1171900000 1482500000 ESYSVYVYKVLKQVHPDTGISSK KAQKKDGRKRKRSRKESYSVYVYKVLKQVH KVLKQVHPDTGISSKAMGIMNSFVNDIFER K E S S K A 0 0 0 1 0 1 1 1 1 1 1 3 0 0 1 4 1 0 3 4 0 0 23 2 2626.3643 P57053;O60814 P57053 36 58 H2BFS;HIST1H2BK Histone H2B type F-S;Histone H2B type 1-K no no 3;4 6.1534E-07 80.293 By MS/MS By MS/MS 8 0 4 2 2 36913000 0 6455200 30457000 3293 953 3427 13473;13474;13475;13476 11086;11087;11088 11088 3 0 2936900 4669400 ESYVETELIFALAK EELVKYLQMARKKARESYVETELIFALAKT RESYVETELIFALAKTNRLAELEEFINGPN R E S A K T 2 0 0 0 0 0 3 0 0 1 2 1 0 1 0 1 1 0 1 1 0 0 14 0 1611.8396 Q00610 Q00610 1166 1179 CLTC Clathrin heavy chain 1 yes yes 2 0.024432 78.488 By MS/MS 2 0.816 1 1 1 3 19076000 0 0 19076000 3294 1125 3428 13477;13478;13479 11089 11089 0 0 0 4083100 ETADTDTADQVMASFK LGVVTFQAFIDFMSRETADTDTADQVMASF TADTDTADQVMASFKILAGDKNYITMDELR R E T F K I 3 0 0 3 0 1 1 0 0 0 0 1 1 1 0 1 3 0 0 1 0 0 16 0 1728.7512 P12814 P12814 819 834 ACTN1 Alpha-actinin-1 yes yes 2 7.9191E-05 107.17 By MS/MS By MS/MS 2 0 2 1 1 14988000 0 5038100 9949700 3295 540 3429 13480;13481 11090;11091 11090 2 0 2268700 2248400 ETANAIVSQQTPQR ADQEIPETDWEVYLRETANAIVSQQTPQRL RETANAIVSQQTPQRLLEVRGRLYELLTHC R E T Q R L 2 1 1 0 0 3 1 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 14 0 1541.7798 P40938 P40938 257 270 RFC3 Replication factor C subunit 3 yes yes 2 3.645E-34 211.46 By MS/MS By MS/MS 6 0 2 1 1 13293000 0 7724000 5569300 3296 788 3430 13482;13483 11092;11093 11092 2 0 2673800 833230 ETASELLMR QEKVDSIDDRHRKNRETASELLMRLKDNRD RHRKNRETASELLMRLKDNRDLQKFLQDCQ R E T M R L 1 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 1 0 0 0 0 0 9 0 1048.5223 Q01082 Q01082 1262 1270 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 1.9215E-05 151.27 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 57032000 0 22809000 34223000 3297 1128 3431 13484;13485;13486;13487 11094;11095 11095 2 0 11149000 7286300 ETEEILADVLK TCNDYVALVHPDLDRETEEILADVLKVEVF DLDRETEEILADVLKVEVFRQTVADQVLVG R E T L K V 1 0 0 1 0 0 3 0 0 1 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1258.6656 P56537 P56537 124 134 EIF6 Eukaryotic translation initiation factor 6 yes yes 2 0.0059988 99.013 By matching By matching By MS/MS 6 0.816 1 1 1 1 1 1 31287000 970280 1794900 28522000 3298 951 3432 13488;13489;13490 11096 11096 1 777310 621330 5061000 ETEGGTVLTATTSELEAINK RKRLDQVEQELNELRETEGGTVLTATTSEL TVLTATTSELEAINKRVKDTMARSEDLDNS R E T N K R 2 0 1 0 0 0 4 2 0 1 2 1 0 0 0 1 5 0 0 1 0 0 20 0 2063.027 Q9UQE7 Q9UQE7 852 871 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 5.2885E-07 102.52 By MS/MS 1.5 0.5 1 1 2 17443000 0 0 17443000 3299 2222 3433 13491;13492 11097 11097 1 0 0 3911200 ETEGGTVLTATTSELEAINKR RKRLDQVEQELNELRETEGGTVLTATTSEL VLTATTSELEAINKRVKDTMARSEDLDNSI R E T K R V 2 1 1 0 0 0 4 2 0 1 2 1 0 0 0 1 5 0 0 1 0 0 21 1 2219.1281 Q9UQE7 Q9UQE7 852 872 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.7981E-120 261.67 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 40066000 0 11917000 28149000 3300 2222 3434 13493;13494;13495;13496 11098;11099;11100;11101 11101 4 0 5483500 6221800 ETEGLRQEMSK QLGPVTQEFWDNLEKETEGLRQEMSKDLEE NLEKETEGLRQEMSKDLEEVKAKVQPYLDD K E T S K D 0 1 0 0 0 1 3 1 0 0 1 1 1 0 0 1 1 0 0 0 0 0 11 1 1306.6187 P02647 P02647 102 112 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 6.5075E-35 211.86 By MS/MS 9 0 2 2 5803100 5803100 0 0 3301 389 3435 13497;13498 11102;11103 11102 2 3257300 0 0 ETEILFHSSLLR ELYKEPTNEELNRLRETEILFHSSLLRLQV RLRETEILFHSSLLRLQVEELLKEVRLSEK R E T L R L 0 1 0 0 0 0 2 0 1 1 3 0 0 1 0 2 1 0 0 0 0 0 12 0 1443.7722 Q9H6R4 Q9H6R4 74 85 NOL6 Nucleolar protein 6 yes yes 3 0.044359 48.044 By MS/MS 2 0 1 1 3992800 0 0 3992800 3302 1988 3436 13499 11104 11104 1 0 0 902300 ETESQLLPDVGAIVTCK KSSENGALPVVSVVRETESQLLPDVGAIVT ESQLLPDVGAIVTCKVSSINSRFAKVHILY R E T C K V 1 0 0 1 1 1 2 1 0 1 2 1 0 0 1 1 2 0 0 2 0 0 17 0 1858.9346 Q9Y3B2 Q9Y3B2 58 74 EXOSC1 Exosome complex component CSL4 yes yes 2 0.018805 62.891 By MS/MS 7 0 1 1 4425400 0 0 4425400 3303 2264 3437 13500 11105 11105 1 0 0 785250 ETGDPGGQLVLAGDPR EPESLVAIAGLMEVKETGDPGGQLVLAGDP TGDPGGQLVLAGDPRQLGPVLRSPLTQKHG K E T P R Q 1 1 0 2 0 1 1 4 0 0 2 0 0 0 2 0 1 0 0 1 0 0 16 0 1580.7794 Q9HCE1 Q9HCE1 667 682 MOV10 Putative helicase MOV-10 yes yes 2 0.00012207 101.39 By MS/MS By MS/MS 2 0 2 1 1 15569000 0 8218300 7351000 3304 2011 3438 13501;13502 11106;11107 11107 2 0 3700800 1661200 ETGYVVERPSTTK RESDGFREEKNYKLKETGYVVERPSTTKDK LKETGYVVERPSTTKDKHKEEDKNSERITV K E T T K D 0 1 0 0 0 0 2 1 0 0 0 1 0 0 1 1 3 0 1 2 0 0 13 1 1465.7413 Q9NYF8 Q9NYF8 463 475 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2;3 3.6079E-71 240.37 By MS/MS By MS/MS 2.14 0.833 2 2 3 1 6 47720000 0 1335200 46385000 3305 2097 3439 13503;13504;13505;13506;13507;13508;13509 11108;11109;11110;11111;11112;11113 11110 5 0 569180 9711500 ETIEILFSEGLIK RGIGIHHGGLLPILKETIEILFSEGLIKAL LKETIEILFSEGLIKALFATETFAMGINMP K E T I K A 0 0 0 0 0 0 3 1 0 3 2 1 0 1 0 1 1 0 0 0 0 0 13 0 1490.8232 P42285 P42285 465 477 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.016563 81.335 By MS/MS 1.5 0.5 1 1 2 3660100 0 0 3660100 3306 800 3440 13510;13511 11114 11114 1 0 0 808540 ETIMAHQPTDVESTLLQLQEQNTAIREELNQLK GINEDHSEGDEKSEKETIMAHQPTDVESTL QEQNTAIREELNQLKNENRMLKDRLNALGF K E T L K N 2 1 2 1 0 5 5 0 1 2 5 1 1 0 1 1 4 0 0 1 0 0 33 1 3819.9313 Q69YQ0 Q69YQ0 229 261 SPECC1L Cytospin-A yes yes 4 2.7443E-10 59.819 By MS/MS 2 0 1 1 1710600 0 0 1710600 3307 1469 3441 13512 11115 11115 1 0 0 386550 ETIPLQETSLYTQDR VDSEWFGFYRSGQAKETIPLQETSLYTQDR ETIPLQETSLYTQDRLGLKEMDNAGQLVFL K E T D R L 0 1 0 1 0 2 2 0 0 1 2 0 0 0 1 1 3 0 1 0 0 0 15 0 1792.8843 P50897 P50897 254 268 PPT1 Palmitoyl-protein thioesterase 1 yes yes 2 0.00035372 117.98 By MS/MS 6 0 1 1 13342000 0 0 13342000 3308 883 3442 13513 11116 11116 1 0 0 1996200 ETLLNGVGYLHEGLSPMER DLIPYLEKLSDSTLKETLLNGVGYLHEGLS NGVGYLHEGLSPMERRLVEQLFSSGAIQVV K E T E R R 0 1 1 0 0 0 3 3 1 0 4 0 1 0 1 1 1 0 1 1 0 0 19 0 2114.0466 O75643 O75643 1611 1629 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 2.332E-10 153.86 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 56084000 0 10262000 45822000 3309 277 3443 13514;13515;13516;13517 11117;11118;11119 11117 2 0 5015800 9901000 ETLLNSATTSLNSK EILTDMSRPVELSDRETLLNSATTSLNSKV RETLLNSATTSLNSKVVSQYSSLLSPMSVN R E T S K V 1 0 2 0 0 0 1 0 0 0 3 1 0 0 0 3 3 0 0 0 0 0 14 0 1477.7624 P50991 P50991 161 174 CCT4 T-complex protein 1 subunit delta yes yes 2 4.2825E-34 210.44 By MS/MS 4 0 1 1 7314700 0 7314700 0 3310 886 3444 13518 11120 11120 1 0 2427500 0 ETLPDSGFSANIEDINEADLVRPLLPK KESSGGEKEVPPPPKETLPDSGFSANIEDI EDINEADLVRPLLPKDMERLTSLRAGIEGP K E T P K D 2 1 2 3 0 0 3 1 0 2 4 1 0 1 3 2 1 0 0 1 0 0 27 1 2952.508 P18583 P18583 1714 1740 SON Protein SON yes yes 3 1.1022E-14 92.833 By MS/MS 1.5 0.5 1 1 2 13747000 0 0 13747000 3311 596 3445 13519;13520 11121 11121 1 0 0 2999200 ETMQSLNDR IAGGLAGMGGIQNEKETMQSLNDRLASYLD GIQNEKETMQSLNDRLASYLDRVRSLETEN K E T D R L 0 1 1 1 0 1 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 9 0 1092.487 P05783 P05783 82 90 KRT18 Keratin, type I cytoskeletal 18 no no 2 2.7331E-05 150.4 By MS/MS By MS/MS By MS/MS 4.38 1.58 1 2 1 2 1 1 2 3 3 65182000 11993000 10036000 43153000 3312 436 3446;3447 13521;13522;13523;13524;13525;13526;13527;13528 11122;11123;11124;11125 11122 154 4 13074000 3042100 7662800 ETNFQVMQMK CQALVRMLAKKPGWKETNFQVMQMKLHIVA KPGWKETNFQVMQMKLHIVALIAQKGNFSK K E T M K L 0 0 1 0 0 2 1 0 0 0 0 1 2 1 0 0 1 0 0 1 0 0 10 0 1254.5737 Q14008 Q14008 652 661 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00083576 112.94 By matching By MS/MS By MS/MS 1 0 3 1 1 1 51117000 1537800 6631300 42948000 3313 1279 3448 13529;13530;13531 11126;11127 11126 2 1537800 3241300 9253800 ETNLDSLPLVDTHSK RISLPLPNFSSLNLRETNLDSLPLVDTHSK ETNLDSLPLVDTHSKRTLLIKTVETRDGQV R E T S K R 0 0 1 2 0 0 1 0 1 0 3 1 0 0 1 2 2 0 0 1 0 0 15 0 1667.8366 P08670 P08670 425 439 VIM Vimentin yes yes 2;3 2.4171E-11 174.73 By MS/MS By MS/MS By MS/MS 4.5 2.47 3 4 4 7 4 1 2 2 2 1 1 9 20 2257900000 16263000 506660000 1735000000 3314 476 3449 13532;13533;13534;13535;13536;13537;13538;13539;13540;13541;13542;13543;13544;13545;13546;13547;13548;13549;13550;13551;13552;13553;13554;13555;13556;13557;13558;13559;13560;13561 11128;11129;11130;11131;11132;11133;11134;11135;11136;11137;11138;11139;11140;11141;11142;11143;11144;11145;11146;11147;11148;11149;11150;11151;11152;11153;11154;11155;11156;11157;11158;11159;11160;11161;11162;11163 11140 36 12688000 166440000 293100000 ETNLDSLPLVDTHSKR RISLPLPNFSSLNLRETNLDSLPLVDTHSK TNLDSLPLVDTHSKRTLLIKTVETRDGQVI R E T K R T 0 1 1 2 0 0 1 0 1 0 3 1 0 0 1 2 2 0 0 1 0 0 16 1 1823.9377 P08670 P08670 425 440 VIM Vimentin yes yes 2;3;4 6.5033E-06 157.56 By MS/MS By MS/MS 4.15 1.35 2 1 6 2 1 1 10 3 526300000 0 505670000 20629000 3315 476 3450 13562;13563;13564;13565;13566;13567;13568;13569;13570;13571;13572;13573;13574 11164;11165;11166;11167;11168;11169;11170;11171;11172;11173;11174;11175;11176 11171 13 0 169230000 3531700 ETNPHHPPAWIASAR INDIKKARLLLKSVRETNPHHPPAWIASAR ETNPHHPPAWIASARLEEVTGKLQVARNLI R E T A R L 3 1 1 0 0 0 1 0 2 1 0 0 0 0 3 1 1 1 0 0 0 0 15 0 1682.8277 O94906 O94906 303 317 PRPF6 Pre-mRNA-processing factor 6 yes yes 3;4 0.0031166 69.258 By MS/MS By MS/MS 2.29 0.7 1 3 3 4 3 73967000 0 30913000 43054000 3316 305 3451 13575;13576;13577;13578;13579;13580;13581 11177;11178;11179;11180;11181;11182 11180 6 0 13589000 9482500 ETPAATEAPSSTPK SDSKPGSSEAAPSSKETPAATEAPSSTPKA KETPAATEAPSSTPKAQGPAASAEEPKPVE K E T P K A 3 0 0 0 0 0 2 0 0 0 0 1 0 0 3 2 3 0 0 0 0 0 14 0 1385.6674 P80723 P80723 185 198 BASP1 Brain acid soluble protein 1 yes yes 2 0.041164 66.267 By MS/MS 4 0 1 1 1103600 0 0 1103600 3317 1093 3452 13582 11183 11183 1 0 0 180260 ETPEEVAADVLAEVITAAVR PEMEGDDNLGGEDKKETPEEVAADVLAEVI VAADVLAEVITAAVRAVDGEGAPAPESSGE K E T V R A 5 1 0 1 0 0 4 0 0 1 1 0 0 0 1 0 2 0 0 4 0 0 20 0 2082.0845 O43823 O43823 568 587 AKAP8 A-kinase anchor protein 8 yes yes 2;3 2.8877E-06 93.812 By MS/MS 2 0 2 2 2397000 0 0 2397000 3318 215 3453 13583;13584 11184;11185 11184 1 0 0 541670 ETPFELIEALLK YGPETRLSMSQLNEKETPFELIEALLKYIE NEKETPFELIEALLKYIETLNVPGAVLVFL K E T L K Y 1 0 0 0 0 0 3 0 0 1 3 1 0 1 1 0 1 0 0 0 0 0 12 0 1401.7755 Q08211 Q08211 631 642 DHX9 ATP-dependent RNA helicase A yes yes 2 0.033242 77.533 By MS/MS 2.5 1.12 1 1 1 1 4 181500000 0 0 181500000 3319 1182 3454 13585;13586;13587;13588 11186;11187 11187 2 0 0 40856000 ETPHSPGVEDAPIAK NEEILERPAQLANARETPHSPGVEDAPIAK ETPHSPGVEDAPIAKVGVLAASMEAKASSQ R E T A K V 2 0 0 1 0 0 2 1 1 1 0 1 0 0 3 1 1 0 0 1 0 0 15 0 1546.7627 Q9UHB6 Q9UHB6 486 500 LIMA1 LIM domain and actin-binding protein 1 yes yes 3 0.0060642 67.136 By MS/MS 2 0 1 1 8553400 0 8553400 0 3320 2150 3455 13589 11188 11188 0 0 3851700 0 ETPLPIDPSMFPTWPAK RRISAEDGLKHEYFRETPLPIDPSMFPTWP PLPIDPSMFPTWPAKSEQQRVKRGTSPRPP R E T A K S 1 0 0 1 0 0 1 0 0 1 1 1 1 1 5 1 2 1 0 0 0 0 17 0 1925.9597 P21127;Q9UQ88 P21127 725 741 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 7.8169E-06 127.56 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 18438000 0 4113100 14325000 3321 620 3456 13590;13591;13592;13593 11189;11190;11191 11190 3 0 1852200 2918700 ETQAINSSLSTLGLVIMALSNK DPGLALGPGERERLRETQAINSSLSTLGLV SLSTLGLVIMALSNKESHVPYRNSKLTYLL R E T N K E 2 0 2 0 0 1 1 1 0 2 4 1 1 0 0 4 2 0 0 1 0 0 22 0 2289.225 Q9BW19 Q9BW19 588 609 KIFC1 Kinesin-like protein KIFC1 yes yes 2;3 2.3615E-14 119.31 By MS/MS 3 0 2 2 9763900 0 0 9763900 3322 1919 3457 13594;13595 11192;11193 11193 2 0 0 1893700 ETQALILAPTR TFSISVLQCLDIQVRETQALILAPTRELAV IQVRETQALILAPTRELAVQIQKGLLALGD R E T T R E 2 1 0 0 0 1 1 0 0 1 2 0 0 0 1 0 2 0 0 0 0 0 11 0 1211.6874 P38919 P38919 106 116 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.025893 80.916 By matching By MS/MS By MS/MS 4.56 2.95 2 1 1 2 1 1 1 1 1 7 667850000 20314000 115650000 531880000 3323 775 3458 13596;13597;13598;13599;13600;13601;13602;13603;13604 11194;11195 11195 2 20314000 29811000 88587000 ETQFAQIFEPLHK AKYAIHCIHAIFSSKETQFAQIFEPLHKSL SKETQFAQIFEPLHKSLDPSNLEHLITPLV K E T H K S 1 0 0 0 0 2 2 0 1 1 1 1 0 2 1 0 1 0 0 0 0 0 13 0 1586.8093 Q9NTI5 Q9NTI5 741 753 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 0.00268 83.358 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 29769000 0 5987100 23782000 3324 2053 3459 13605;13606 11196;11197 11197 2 0 2696100 5124100 ETQSQLETER RIEERCRRKLEDSTRETQSQLETERSRYQR EDSTRETQSQLETERSRYQREIDKLRQRPY R E T E R S 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 10 0 1219.5681 P15924 P15924 1923 1932 DSP Desmoplakin yes yes 2 0.00066235 131.5 By MS/MS By MS/MS By MS/MS 4.18 2.92 2 2 2 1 1 1 1 1 8 2 1 23998000 15172000 6336600 2490000 3325 572 3460 13607;13608;13609;13610;13611;13612;13613;13614;13615;13616;13617 11198;11199;11200;11201;11202;11203;11204;11205 11199 7 15849000 3039400 482940 ETQVILLDTPGIISPGK VHTTRCQALGVITEKETQVILLDTPGIISP QVILLDTPGIISPGKQKRHHLELSLLEDPW K E T G K Q 0 0 0 1 0 1 1 2 0 3 2 1 0 0 2 1 2 0 0 1 0 0 17 0 1779.9982 O75616 O75616 160 176 ERAL1 GTPase Era, mitochondrial yes yes 2 0.010512 88.552 By MS/MS 5 0 1 1 1362900 0 0 1362900 3326 275 3461 13618 11206 11206 0 0 0 190100 ETSGNLEQLLLAVVK YMTISGFQIEETIDRETSGNLEQLLLAVVK ETSGNLEQLLLAVVKSIRSIPAYLAETLYY R E T V K S 1 0 1 0 0 1 2 1 0 0 4 1 0 0 0 1 1 0 0 2 0 0 15 0 1612.9036 P08758 P08758 228 242 ANXA5 Annexin A5 yes yes 2 0.010355 76.143 By matching By MS/MS 6 0 2 1 1 4282800 0 655860 3627000 3327 479 3462 13619;13620 11207 11207 1 0 227030 542630 ETSLLAVPGALSPLAIPNAAAAAAAAAAGR GQPALDPAIAAAFAKETSLLAVPGALSPLA IPNAAAAAAAAAAGRVGMPGVSAGGNTVLL K E T G R V 13 1 1 0 0 0 1 2 0 1 4 0 0 0 3 2 1 0 0 1 0 0 30 0 2685.4814 Q9UKA9 Q9UKA9 297 326 PTBP2 Polypyrimidine tract-binding protein 2 yes yes 3 1.6744E-15 87.196 By MS/MS 4 0 1 1 2923300 0 2923300 0 3328 2176 3463 13621 11208 11208 1 0 970150 0 ETSSTGEEALVAAVR HYVGGPLDALIQGLKETSSTGEEALVAAVR ETSSTGEEALVAAVRCYDDLSRLLWGLEGL K E T V R C 3 1 0 0 0 0 3 1 0 0 1 0 0 0 0 2 2 0 0 2 0 0 15 0 1518.7526 Q9H6R4 Q9H6R4 650 664 NOL6 Nucleolar protein 6 yes yes 2 0.00029003 123.8 By MS/MS By MS/MS 2 0 2 1 1 19837000 0 5196500 14640000 3329 1988 3464 13622;13623 11209;11210 11209 2 0 2340100 3308400 ETSYGLSFFKPR GRAEKVTFQFSYGTKETSYGLSFFKPRPGN GTKETSYGLSFFKPRPGNFERNFSVNLYKV K E T P R P 0 1 0 0 0 0 1 1 0 0 1 1 0 2 1 2 1 0 1 0 0 0 12 1 1430.7194 Q9Y512 Q9Y512 169 180 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 3 0.018173 66.486 By MS/MS 4 0 1 1 9187300 0 0 9187300 3330 2292 3465 13624 11211 11211 1 0 0 1500600 ETTDTDTADQVIASFK SGLVTFQAFIDFMSRETTDTDTADQVIASF TTDTDTADQVIASFKVLAGDKNFITAEELR R E T F K V 2 0 0 3 0 1 1 0 0 1 0 1 0 1 0 1 4 0 0 1 0 0 16 0 1740.8054 O43707 O43707 838 853 ACTN4 Alpha-actinin-4 yes yes 2 1.0719E-12 180.18 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 81343000 0 33719000 47624000 3331 210 3466 13625;13626;13627 11212;11213 11212 2 0 15306000 10762000 ETTYYDVLGVKPNATQEELKK ______________________________ VLGVKPNATQEELKKAYRKLALKYHPDKNP K E T K K A 1 0 1 1 0 1 3 1 0 0 2 3 0 0 1 0 3 0 2 2 0 0 21 2 2425.2377 P31689 P31689 4 24 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 4 0.0114 44.441 By MS/MS 5 0 1 1 14861000 0 0 14861000 3332 720 3467 13628 11214 11214 1 0 0 2072800 ETVAVKPTENNEEEFTSK LEELSLEAQGIKADRETVAVKPTENNEEEF AVKPTENNEEEFTSKDKKKKGQKGKKQSFD R E T S K D 1 0 2 0 0 0 5 0 0 0 0 2 0 1 1 1 3 0 0 2 0 0 18 1 2050.9695 O60841 O60841 77 94 EIF5B Eukaryotic translation initiation factor 5B yes yes 2;3 5.5196E-34 175.21 By matching By MS/MS 1.71 0.7 3 3 1 1 6 60036000 0 4203100 55832000 3333 236 3468 13629;13630;13631;13632;13633;13634;13635 11215;11216;11217;11218 11218 4 0 2054400 12175000 ETVEEQASTTER KHKLFRIKINQIQMKETVEEQASTTERVFQ QMKETVEEQASTTERVFQDRQYQIDAAIVR K E T E R V 1 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 3 0 0 1 0 0 12 0 1378.6212 Q13620 Q13620 830 841 CUL4B Cullin-4B yes yes 2 1.4864E-05 155.06 By matching By MS/MS 2.5 0.5 1 1 1 1 4938400 0 2438600 2499800 3334 1264 3469 13636;13637 11219 11219 1 0 1098100 484840 ETVNSPAIYK RKDLMDKTQKVKVKKETVNSPAIYKFQSRR VKVKKETVNSPAIYKFQSRRKR________ K E T Y K F 1 0 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 0 1 1 0 0 10 0 1120.5764 Q9Y3A2 Q9Y3A2 237 246 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.038408 75.825 By MS/MS 6 0 1 1 9650000 0 0 9650000 3335 2261 3470 13638 11220 11220 1 0 0 1443700 ETVSEESNVLCLSK ACIPIKKSDPVVSYRETVSEESNVLCLSKS RETVSEESNVLCLSKSPNKHNRLYMKARPF R E T S K S 0 0 1 0 1 0 3 0 0 0 2 1 0 0 0 3 1 0 0 2 0 0 14 0 1593.7556 P13639 P13639 581 594 EEF2 Elongation factor 2 yes yes 2 0.0094234 81.92 By MS/MS 1.5 0.5 1 1 2 11807000 0 0 11807000 3336 547 3471 13639;13640 11221 11221 1 0 0 2602200 ETVSQRPGATVPTDFATFPSSAFLR SLSDTVEKLKDEVLKETVSQRPGATVPTDF VPTDFATFPSSAFLRAKEEQQDDTVYMGKV K E T L R A 3 2 0 1 0 1 1 1 0 0 1 0 0 3 3 3 4 0 0 2 0 0 25 1 2681.3449 Q14203 Q14203 1209 1233 DCTN1 Dynactin subunit 1 yes yes 3 0.0011147 47.175 By MS/MS 2 0 1 1 2337500 0 2337500 0 3337 1291 3472 13641 11222 11222 1 0 1052600 0 ETWLSENQR LEQLARRFDRKAAMRETWLSENQRLVSQDN RKAAMRETWLSENQRLVSQDNFGFDLPAVE R E T Q R L 0 1 1 0 0 1 2 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1161.5415 Q01082;P11277;O15020 Q01082 435 443 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 no no 2 2.4792E-07 159.04 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 35282000 0 16670000 18612000 3338 1128;160 3473 13642;13643;13644 11223;11224 11223 2 0 8053800 4010300 ETYEVLLSFIQAALGDQPR EMVGIIYKPKTKETRETYEVLLSFIQAALG VLLSFIQAALGDQPRDILCGAADEVLAVLK R E T P R D 2 1 0 1 0 2 2 1 0 1 3 0 0 1 1 1 1 0 1 1 0 0 19 0 2149.1055 O75643 O75643 111 129 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 2.1255E-12 166.6 By MS/MS 1.5 0.5 2 2 4 4975800 0 0 4975800 3339 277 3474 13645;13646;13647;13648 11225;11226;11227 11227 3 0 0 1097600 ETYGDMADCCEK HTLFGDELCKVASLRETYGDMADCCEKQEP SLRETYGDMADCCEKQEPERNECFLSHKDD R E T E K Q 1 0 0 2 2 0 2 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 12 0 1477.516 CON__P02769 CON__P02769 106 117 yes yes 2 0.00034748 128.91 By MS/MS 4.5 0.5 1 1 2 9505400 9505400 0 0 + 3340 45 3475 13649;13650 11228 11228 1 7455000 0 0 ETYGEMADCCAK HTLFGDKLCTVATLRETYGEMADCCAKQEP TLRETYGEMADCCAKQEPERNECFLQHKDD R E T A K Q 2 0 0 1 2 0 2 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 12 0 1433.5261 CON__P02768-1;P02768 CON__P02768-1 106 117 ALB Serum albumin yes no 2 0.0001707 134.23 By MS/MS 6.6 2.06 1 1 1 2 5 212220000 212220000 0 0 + 3341 44 3476;3477 13651;13652;13653;13654;13655 11229;11230;11231;11232 11231 19 4 124780000 0 0 EVAAFAQFGSDLDAATQQLLSR KQVAGTMKLELAQYREVAAFAQFGSDLDAA FGSDLDAATQQLLSRGVRLTELLKQGQYSP R E V S R G 5 1 0 2 0 3 1 1 0 0 3 0 0 2 0 2 1 0 0 1 0 0 22 0 2337.1601 P25705 P25705 442 463 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 3 0.00086987 61.703 By MS/MS 3.5 0.5 1 1 2 4205900 0 0 4205900 3342 661 3478 13656;13657 11233 11233 1 0 0 714960 EVADVLVDGYNVHYGAR KRAKQRHNITLLWDREVADVLVDGYNVHYG ADVLVDGYNVHYGARSIKHEVERRVVNQLA R E V A R S 2 1 1 2 0 0 1 2 1 0 1 0 0 0 0 0 0 0 2 4 0 0 17 0 1875.9115 Q9H078 Q9H078 604 620 CLPB Caseinolytic peptidase B protein homolog yes yes 3 0.00012938 95.538 By MS/MS 4 0 1 1 7799700 0 0 7799700 3343 1958 3479 13658 11234 11234 1 0 0 1273900 EVAFFNNFLTDAK HIFNKHAEKIEEVKKEVAFFNNFLTDAKRP KKEVAFFNNFLTDAKRPALPEIKPAQPPGP K E V A K R 2 0 2 1 0 0 1 0 0 0 1 1 0 3 0 0 1 0 0 1 0 0 13 0 1514.7405 Q9BXP5 Q9BXP5 746 758 SRRT Serrate RNA effector molecule homolog yes yes 2 0.00028362 138.22 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 43592000 0 5857400 37734000 3344 1929 3480 13659;13660;13661 11235;11236 11236 2 0 2637700 8431200 EVAGHTEQLQMSR DAEAWFTSRTEELNREVAGHTEQLQMSRSE NREVAGHTEQLQMSRSEVTDLRRTLQGLEI R E V S R S 1 1 0 0 0 2 2 1 1 0 1 0 1 0 0 1 1 0 0 1 0 0 13 0 1484.7042 CON__P08727;P08727 CON__P08727 281 293 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 3.9626E-106 260.08 By MS/MS By MS/MS By MS/MS 5 0.577 1 4 1 1 2 3 260820000 9287300 10043000 241490000 + 3345 51 3481 13662;13663;13664;13665;13666;13667 11237;11238;11239;11240;11241 11240 5 7440300 2588800 33732000 EVALNTIIFMGR RVTFKANRPILVLIREVALNTIIFMGRVAN LIREVALNTIIFMGRVANPCVD________ R E V G R V 1 1 1 0 0 0 1 1 0 2 1 0 1 1 0 0 1 0 0 1 0 0 12 0 1362.733 CON__P41361 CON__P41361 447 458 yes yes 2 0.00085835 119.75 By MS/MS By MS/MS By MS/MS 10 0 4 2 1 1 15670000 6856400 2271000 6542300 + 3346 67 3482;3483 13668;13669;13670;13671 11242;11243;11244;11245 11245 55 4 12491000 11489000 14309000 EVANSTANLVK TTNPTAKRQFVQSAKEVANSTANLVKTIKA QSAKEVANSTANLVKTIKALDGAFTEENRA K E V V K T 2 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 2 0 0 11 0 1144.6088 Q9Y490;Q9Y4G6 Q9Y490 1531 1541 TLN1;TLN2 Talin-1;Talin-2 yes no 2 0.053687 72.928 By MS/MS 1 0 1 1 2419900 0 2419900 0 3347 2284 3484 13672 11246 11246 1 0 1182800 0 EVASNSELVQSSR DAETWFLSKTEELNKEVASNSELVQSSRSE NKEVASNSELVQSSRSEVTELRRVLQGLEI K E V S R S 1 1 1 0 0 1 2 0 0 0 1 0 0 0 0 4 0 0 0 2 0 0 13 0 1404.6845 CON__P08779;P08779 CON__P08779 318 330 KRT16 Keratin, type I cytoskeletal 16 yes no 2 4.521E-73 248.45 By MS/MS By matching By MS/MS 5.14 2.8 1 1 3 2 2 1 1 1 2 9 1 4 298910000 271080000 925280 26910000 + 3348 53 3485 13673;13674;13675;13676;13677;13678;13679;13680;13681;13682;13683;13684;13685;13686 11247;11248;11249;11250;11251;11252;11253;11254;11255;11256;11257;11258 11253 11 257600000 394450 4119200 EVATNSELVQSGK DAEEWFFTKTEELNREVATNSELVQSGKSE NREVATNSELVQSGKSEISELRRTMQNLEI R E V G K S 1 0 1 0 0 1 2 1 0 0 1 1 0 0 0 2 1 0 0 2 0 0 13 0 1360.6834 CON__P02533;P02533;Q04695;CON__Q04695 CON__P02533 316 328 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 1.1028E-11 182.28 By MS/MS By MS/MS By MS/MS 5.48 2.79 3 2 2 3 4 3 3 2 2 3 11 6 10 2095500000 1376000000 138190000 581320000 + 3349 35;73 3486 13687;13688;13689;13690;13691;13692;13693;13694;13695;13696;13697;13698;13699;13700;13701;13702;13703;13704;13705;13706;13707;13708;13709;13710;13711;13712;13713 11259;11260;11261;11262;11263;11264;11265;11266;11267;11268;11269;11270;11271;11272;11273;11274;11275;11276;11277;11278;11279;11280;11281;11282;11283;11284 11267 24 1432400000 50451000 133480000 EVAWVIFDEIHYMR EILRSMLYRGSEVMREVAWVIFDEIHYMRD REVAWVIFDEIHYMRDSERGVVWEETIILL R E V M R D 1 1 0 1 0 0 2 0 1 2 0 0 1 1 0 0 0 1 1 2 0 0 14 0 1806.8763 P42285 P42285 245 258 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.002246 78.287 By MS/MS 2 0 1 1 7407200 0 0 7407200 3350 800 3487 13714 11285 11285 1 0 0 1673900 EVCGFAPYER GRLTKHTKFVRDMIREVCGFAPYERRAMEL RDMIREVCGFAPYERRAMELLKVSKDKRAL R E V E R R 1 1 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 10 0 1226.539 Q9Y3U8 Q9Y3U8 46 55 RPL36 60S ribosomal protein L36 yes yes 2 0.00013341 144.12 By MS/MS By matching By MS/MS 8.43 0.904 1 3 2 1 2 1 4 59352000 8122100 1509300 49721000 3351 2278 3488 13715;13716;13717;13718;13719;13720;13721 11286;11287;11288;11289;11290 11289 5 6312000 686670 10582000 EVDDLEQWIAER RGKLDERHRLFQLNREVDDLEQWIAEREVV LNREVDDLEQWIAEREVVAGSHELGQDYEH R E V E R E 1 1 0 2 0 1 3 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 12 0 1501.7049 Q01082 Q01082 1706 1717 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 3.8485E-119 218.47 By MS/MS 1 0 1 1 0 0 0 0 3352 1128 3489 13722 11291 11291 1 0 0 0 EVDDLGPEVGDIK TGQEEIDEACKRIKREVDDLGPEVGDIKII KREVDDLGPEVGDIKIIPLYSTLPPQQQQR R E V I K I 0 0 0 3 0 0 2 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 13 0 1384.6722 O43143 O43143 372 384 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 3.9102E-35 150.04 By MS/MS 2 0 1 1 0 0 0 0 3353 186 3490 13723 11292 11292 1 0 0 0 EVDEDFDSK LGAPQTHLGLKNMIKEVDEDFDSKLSFREF LKNMIKEVDEDFDSKLSFREFLLIFRKAAA K E V S K L 0 0 0 3 0 0 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 1082.4404 Q96C19 Q96C19 139 147 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.002059 105.57 By matching By MS/MS 6.33 0.471 2 1 1 2 24755000 1698700 0 23056000 3354 1757 3491 13724;13725;13726 11293 11293 1 2261900 0 3567600 EVDEGPSPPEQFTAVK HALDNGLFTLGAPHKEVDEGPSPPEQFTAV VDEGPSPPEQFTAVKLSDSRIALKSGYGKY K E V V K L 1 0 0 1 0 1 3 1 0 0 0 1 0 1 3 1 1 0 0 2 0 0 16 0 1728.8206 Q14331 Q14331 86 101 FRG1 Protein FRG1 yes yes 2 0.00075811 96.604 By MS/MS 6 0 1 1 10789000 0 0 10789000 3355 1300 3492 13727 11294 11294 1 0 0 1614200 EVDEQMLAIQSK YLTVATVFRGRMSMKEVDEQMLAIQSKNSS SMKEVDEQMLAIQSKNSSYFVEWIPNNVKV K E V S K N 1 0 0 1 0 2 2 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 12 0 1389.681 Q13509;Q9BUF5 Q13509 325 336 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 0.0077993 97.813 By MS/MS 5 0 1 1 11917000 0 11917000 0 3356 1254;1905 3493 13728 11295 11295 1 0 3071700 0 EVDEQMLNVQNK YLTVAAVFRGRMSMKEVDEQMLNVQNKNSS SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT K E V N K N 0 0 2 1 0 2 2 0 0 0 1 1 1 0 0 0 0 0 0 2 0 0 12 0 1445.682 P07437;P68371;Q13885;Q9BVA1 P68371 325 336 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 7.1207E-35 214.05 By MS/MS By MS/MS By MS/MS 4.6 1.81 2 3 4 7 9 4 4 2 3 15 17 3013400000 68456000 444570000 2500300000 3357 1079;462;1274 3494;3495 13729;13730;13731;13732;13733;13734;13735;13736;13737;13738;13739;13740;13741;13742;13743;13744;13745;13746;13747;13748;13749;13750;13751;13752;13753;13754;13755;13756;13757;13758;13759;13760;13761;13762;13763 11296;11297;11298;11299;11300;11301;11302;11303;11304;11305;11306;11307;11308;11309;11310;11311;11312;11313;11314;11315;11316;11317;11318;11319;11320;11321;11322;11323;11324;11325 11310 176 30 53584000 130030000 387810000 EVDIAIYNLGNQFGASTRR E V R R 2 2 2 1 0 1 1 2 0 2 1 0 0 1 0 1 1 0 1 1 0 0 19 1 2123.076 REV__Q9Y4H2 yes yes 3 0.0082445 48.053 By MS/MS 8.33 0.471 2 1 3 25647000 25647000 0 0 + 3358 2347 3496 13764;13765;13766 11326 11326 1 19610000 0 0 EVDNLYNIEILR IRIKQIESDRQNLLKEVDNLYNIEILRLPK LLKEVDNLYNIEILRLPKALREMNWLDYFA K E V L R L 0 1 2 1 0 0 2 0 0 2 2 0 0 0 0 0 0 0 1 1 0 0 12 0 1489.7777 Q53HL2 Q53HL2 49 60 CDCA8 Borealin yes yes 2 5.1265E-05 146.11 By MS/MS 6 0 1 1 9754900 0 0 9754900 3359 1429 3497 13767 11327 11327 1 0 0 1459400 EVDYSDSLTEK EEEEKMFGRGSRHRKEVDYSDSLTEKQWLK RHRKEVDYSDSLTEKQWLKAIEEGTLEEIE K E V E K Q 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 1 0 1 1 0 0 11 0 1284.5721 P51532 P51532 1376 1386 SMARCA4 Transcription activator BRG1 yes yes 2 0.011382 89.029 By MS/MS 1 0 1 1 12323000 0 0 12323000 3360 894 3498 13768 11328 11328 1 0 0 2655100 EVEAQLPEKVEYVIK LHKVLRPFLLRRLKKEVEAQLPEKVEYVIK EVEAQLPEKVEYVIKCDMSALQRVLYRHMQ K E V I K C 1 0 0 0 0 1 4 0 0 1 1 2 0 0 1 0 0 0 1 3 0 0 15 1 1772.956 P51532 P51532 983 997 SMARCA4 Transcription activator BRG1 yes yes 2 4.8214E-17 193.81 By MS/MS 1 0 1 1 6500000 0 0 6500000 3361 894 3499 13769 11329 11329 1 0 0 1400500 EVEEISLLQPQVEESVLNLGK VLFEHAVGYALLALKEVEEISLLQPQVEES LLQPQVEESVLNLGKFHSIVRLVAFCPFAS K E V G K F 0 0 1 0 0 2 5 1 0 1 4 1 0 0 1 2 0 0 0 3 0 0 21 0 2352.2424 O00567 O00567 21 41 NOP56 Nucleolar protein 56 yes yes 2;3 1.9978E-28 192.14 By MS/MS 3.33 0.471 2 1 3 30831000 0 0 30831000 3362 130 3500 13770;13771;13772 11330;11331 11331 2 0 0 5868600 EVEGDDVPESIMLEMK VPNEEDWKKRLELRKEVEGDDVPESIMLEM VEGDDVPESIMLEMKANFSLPEKCDYMDEV K E V M K A 0 0 0 2 0 0 4 1 0 1 1 1 2 0 1 1 0 0 0 2 0 0 16 0 1819.822 Q1KMD3 Q1KMD3 578 593 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 0.0091196 73.927 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 19932000 0 1306500 18626000 3363 1404 3501 13773;13774;13775 11332;11333 11333 2 0 588330 4193600 EVENWNPLTDTVPIHSWIHPWLPLMQAR LDNILDQLIFPKLQKEVENWNPLTDTVPIH IHSWIHPWLPLMQARLEPLYSPIRSKLSSA K E V A R L 1 1 2 1 0 1 2 0 2 2 3 0 1 0 4 1 2 3 0 2 0 0 28 0 3378.6972 Q9UBB9 Q9UBB9 535 562 TFIP11 Tuftelin-interacting protein 11 yes yes 4 2.6072E-05 54.152 By MS/MS 2 0 1 1 4766500 0 0 4766500 3364 2129 3502 13776 11334 11334 1 0 0 1077100 EVEPEPTEDKDLEADEEDTR EGDTQTEETQPSETKEVEPEPTEDKDLEAD PTEDKDLEADEEDTRKKDASDDLDDLNFFN K E V T R K 1 1 0 4 0 0 7 0 0 0 1 1 0 0 2 0 2 0 0 1 0 0 20 1 2345.003 P20042 P20042 43 62 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2;3 1.0197E-139 273.23 By MS/MS 4.67 0.471 1 2 3 103320000 0 0 103320000 3365 613 3503 13777;13778;13779 11335;11336 11335 2 0 0 14807000 EVEQALLGQTQYK E V Y K 1 0 0 0 0 3 2 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 13 0 1505.7726 REV__Q9P2D7 yes yes 2 0.0031623 105.52 By MS/MS By MS/MS By MS/MS 7.71 2.65 2 3 4 4 4 5 5 7 1660400000 159350000 275570000 1225500000 + 3366 2343 3504 13780;13781;13782;13783;13784;13785;13786;13787;13788;13789;13790;13791;13792;13793;13794;13795;13796 11337;11338;11339;11340;11341;11342;11343;11344;11345;11346;11347;11348;11349 11344 13 172450000 1075800000 558670000 EVEVEVESMDK SEEATLFTKELVLQREVEVEVESMDKAGNF VLQREVEVEVESMDKAGNFIGWLHIDGANL R E V D K A 0 0 0 1 0 0 4 0 0 0 0 1 1 0 0 1 0 0 0 3 0 0 11 0 1292.5806 Q7KZF4 Q7KZF4 593 603 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 1.7758E-05 150.35 By MS/MS 1.5 0.5 1 1 2 16266000 0 0 16266000 3367 1518 3505 13797;13798 11350 11350 1 0 0 3655500 EVEVTLVR SSETSHSVPEAKGSKEVEVTLVRKDKGRQK PEAKGSKEVEVTLVRKDKGRQKTTRSRRKR K E V V R K 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 8 0 943.53385 Q96T58 Q96T58 2320 2327 SPEN Msx2-interacting protein yes yes 2 0.013588 89.369 By MS/MS 1 0 1 1 9222900 0 0 9222900 3368 1839 3506 13799 11351 11351 1 0 0 1987200 EVFEDAAEIR LAKNLPYKVTQDELKEVFEDAAEIRLVSKD QDELKEVFEDAAEIRLVSKDGKSKGIAYIE K E V I R L 2 1 0 1 0 0 3 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 10 0 1177.5615 P19338 P19338 411 420 NCL Nucleolin yes yes 2 3.112E-16 176.09 By MS/MS 3 1.41 1 1 1 1 1 5 497750000 0 0 497750000 3369 604 3507 13800;13801;13802;13803;13804 11352;11353;11354;11355;11356 11355 5 0 0 102240000 EVFGTFGIPFLLR DKENEMLVTVAHFHKEVFGTFGIPFLLRIH HKEVFGTFGIPFLLRIHQGEHFREVMKRIQ K E V L R I 0 1 0 0 0 0 1 2 0 1 2 0 0 3 1 0 1 0 0 1 0 0 13 0 1494.8235 Q93009 Q93009 998 1010 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.00026837 145.9 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 10834000 0 1474700 9359000 3370 1738 3508 13805;13806;13807;13808;13809 11357;11358;11359;11360 11359 4 0 664090 2006200 EVFLVMPTGGGK RPLQLETINVTMAGKEVFLVMPTGGGKSLC AGKEVFLVMPTGGGKSLCYQLPALCSDGFT K E V G K S 0 0 0 0 0 0 1 3 0 0 1 1 1 1 1 0 1 0 0 2 0 0 12 0 1233.6427 P46063 P46063 108 119 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.0021508 102.06 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 29514000 0 0 29514000 3371 823 3509 13810;13811;13812 11361;11362;11363 11361 3 0 0 5791600 EVFSMAGVVVR FVANLDYKVGWKKLKEVFSMAGVVVRADIL KKLKEVFSMAGVVVRADILEDKDGKSRGIG K E V V R A 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 4 0 0 11 0 1192.6274 P52272 P52272 222 232 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 5.4702E-07 155.07 By MS/MS By MS/MS 4.56 1.95 1 2 2 2 1 1 5 4 183610000 0 69537000 114070000 3372 902 3510 13813;13814;13815;13816;13817;13818;13819;13820;13821 11364;11365;11366;11367;11368;11369;11370;11371 11365 8 0 28144000 20663000 EVFTSSSSSSSR HLSSQQASGQSYSSREVFTSSSSSSSRQTR SSREVFTSSSSSSSRQTRPILKEQSSSSFS R E V S R Q 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 7 1 0 0 1 0 0 12 0 1259.563 CON__P08779;P08779 CON__P08779 442 453 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.00050271 125.75 By MS/MS By matching 5.5 2.87 1 1 1 1 1 1 1 1 1 1 9 1 16709000 16606000 102300 0 + 3373 53 3511 13822;13823;13824;13825;13826;13827;13828;13829;13830;13831 11372;11373;11374;11375;11376;11377;11378;11379 11372 8 18966000 46545 0 EVGIEFMDLYSHLVPVYDVEPLEK LSRIKRHLLTQRAFKEVGIEFMDLYSHLVP YSHLVPVYDVEPLEKITDAYLDQYLWYEAD K E V E K I 0 0 0 2 0 0 4 1 1 1 3 1 1 1 2 1 0 0 2 4 0 0 24 0 2820.3932 Q6P2Q9 Q6P2Q9 893 916 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 4.0472E-05 68.374 By MS/MS 1.5 0.5 1 1 2 21985000 0 0 21985000 3374 1490 3512 13832;13833 11380 11380 1 0 0 4912000 EVGTPHGIILDSVDAAFICPGSSR GGYTLVSGYPKRLEKEVGTPHGIILDSVDA LDSVDAAFICPGSSRLHIMAGRRLWWLDLK K E V S R L 2 1 0 2 1 0 1 3 1 3 1 0 0 1 2 3 1 0 0 2 0 0 24 0 2497.2271 P02790 P02790 348 371 HPX Hemopexin yes yes 3 2.4678E-21 135.98 By MS/MS 9 0 1 1 9112600 9112600 0 0 3375 401 3513 13834 11381 11381 1 5114900 0 0 EVHGMAQPSQNNYWK SVTGEQYGRPISGQKEVHGMAQPSQNNYWK EVHGMAQPSQNNYWKAMEGIFMKPSELLKA K E V W K A 1 0 2 0 0 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 0 0 15 0 1787.805 Q99470 Q99470 175 189 SDF2 Stromal cell-derived factor 2 yes yes 3 9.9615E-05 107.99 By MS/MS By MS/MS 7 0 2 1 1 17808000 0 5348600 12459000 3376 1844 3514 13835;13836 11382;11383 11383 2 0 3071200 2210800 EVIDLLK PLMDNADSSPVVDKREVIDLLKPDQVEGIQ SSPVVDKREVIDLLKPDQVEGIQKSGTKKL R E V L K P 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 Q86UP2;Q9Y4F3 Q86UP2 250 256 KTN1;KIAA0430 Kinectin;Meiosis arrest female protein 1 yes no 2 0.019593 103.29 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 19549000 0 1112500 18437000 3377 1549 3515 13837;13838;13839;13840 11384;11385;11386;11387 11385 4 0 500970 4022800 EVIDLLKPDQVEGIQK PLMDNADSSPVVDKREVIDLLKPDQVEGIQ VIDLLKPDQVEGIQKSGTKKLKTETDKENA R E V Q K S 0 0 0 2 0 2 2 1 0 2 2 2 0 0 1 0 0 0 0 2 0 0 16 1 1823.004 Q86UP2 Q86UP2 250 265 KTN1 Kinectin yes yes 3 0.0057968 62.646 By MS/MS 1.5 0.5 1 1 2 16905000 0 0 16905000 3378 1549 3516 13841;13842 11388;11389 11389 2 0 0 3757000 EVIEIEDASPTK RKRIAEREREREKLREVIEIEDASPTKCPI KLREVIEIEDASPTKCPITTKLVLDEDEET R E V T K C 1 0 0 1 0 0 3 0 0 2 0 1 0 0 1 1 1 0 0 1 0 0 12 0 1329.6664 P46100 P46100 1519 1530 ATRX Transcriptional regulator ATRX yes yes 2 0.0078496 97.734 By MS/MS 1 0 1 1 6846700 0 0 6846700 3379 825 3517 13843 11390 11390 1 0 0 1475200 EVIPVNVPEAQEEMK VIDPVAPRYVALLKKEVIPVNVPEAQEEMK EVIPVNVPEAQEEMKEVAKHPKNPEVGLKP K E V M K E 1 0 1 0 0 1 4 0 0 1 0 1 1 0 2 0 0 0 0 3 0 0 15 0 1710.8498 P07814 P07814 514 528 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.013145 73.848 By MS/MS 1.5 0.5 1 1 2 7274000 0 0 7274000 3380 465 3518 13844;13845 11391 11391 1 0 0 1600200 EVLEALGEVMVSRPR QSVSQIDGDFEDYKREVLEALGEVMVSRPR EVLEALGEVMVSRPRE______________ R E V P R E 1 2 0 0 0 0 3 1 0 0 2 0 1 0 1 1 0 0 0 3 0 0 15 1 1683.8978 Q8NE71 Q8NE71 830 844 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2;3 2.0697E-88 250.69 By MS/MS By MS/MS 2 0 3 1 2 54313000 0 5660400 48653000 3381 1638 3519 13846;13847;13848 11392;11393;11394 11394 2 0 2549000 10995000 EVLINNINR DPSILDSLDLNEDEREVLINNINRRLTPQA LNEDEREVLINNINRRLTPQAVKIRADIEV R E V N R R 0 1 3 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1083.6037 P05198 P05198 174 182 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.00044644 119.57 By matching By MS/MS 5.67 0.471 1 2 1 2 50942000 0 15658000 35285000 3382 428 3520 13849;13850;13851 11395;11396 11396 2 0 5420100 5228500 EVLLEAQDMAVR AQLEFNDKKGAKIIKEVLLEAQDMAVRDHN IIKEVLLEAQDMAVRDHNVEFRSNLYIAES K E V V R D 2 1 0 1 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 12 0 1372.7021 Q9NWU5 Q9NWU5 113 124 MRPL22 39S ribosomal protein L22, mitochondrial yes yes 2 0.0062204 100.48 By matching By MS/MS 6.5 0.5 1 1 1 1 16604000 0 2144900 14460000 3383 2080 3521 13852;13853 11397 11397 1 0 742480 2565800 EVLLTGIQTQGAK TEFNPEPWIQVDMQKEVLLTGIQTQGAKHY QKEVLLTGIQTQGAKHYLKPYYTTEFCVAY K E V A K H 1 0 0 0 0 2 1 2 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1356.7613 CON__Q28107 CON__Q28107 1957 1969 yes yes 2 0.00014165 151.22 By MS/MS By MS/MS 7 3 1 1 1 1 20918000 0 955830 19962000 + 3384 77 3522 13854;13855 11398;11399 11399 2 0 4835700 3260500 EVLPSTR SPAKIHVFYIDYGNREVLPSTRLGTLSPAF FYIDYGNREVLPSTRLGTLSPAFSTRVLPA R E V T R L 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 7 0 800.43922 Q7KZF4 Q7KZF4 770 776 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.034612 88.643 By MS/MS 2 0 1 1 2282700 0 2282700 0 3385 1518 3523 13856 11400 11400 1 0 1027900 0 EVMLILIR LIPLMDAEYANYYTREVMLILIREFQSPDE YANYYTREVMLILIREFQSPDEEMKKIVLK R E V I R E 0 1 0 0 0 0 1 0 0 2 2 0 1 0 0 0 0 0 0 1 0 0 8 0 985.59942 O75533 O75533 768 775 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0018144 110.61 By MS/MS 1.5 0.5 1 1 2 10435000 0 0 10435000 3386 270 3524 13857;13858 11401 11401 1 0 0 2336500 EVMNADDPDLQRPDEEAIK KDKVIYSKYTDLVPKEVMNADDPDLQRPDE ADDPDLQRPDEEAIKEITEKTRVALEKSVS K E V I K E 2 1 1 4 0 1 3 0 0 1 1 1 1 0 2 0 0 0 0 1 0 0 19 1 2184.0005 Q13573 Q13573 123 141 SNW1 SNW domain-containing protein 1 yes yes 3 0.019307 43.696 By MS/MS 3 0 1 1 10371000 0 0 10371000 3387 1259 3525 13859 11402 11402 1 0 0 2011500 EVMSLHEASR EGSGCIAGVTVPSTREVMSLHEASRKELIP VPSTREVMSLHEASRKELIPAAFATWLLEA R E V S R K 1 1 0 0 0 0 2 0 1 0 1 0 1 0 0 2 0 0 0 1 0 0 10 0 1157.5499 P58107 P58107 1909 1918 EPPK1 Epiplakin yes yes 2 0.0152 85.731 By MS/MS By MS/MS 1 0 2 1 1 5872200 0 3511700 2360500 3388 958 3526 13860;13861 11403;11404 11404 1 0 1716400 508610 EVNKFQMAYSNLLR ATDGKKKISTVVSSKEVNKFQMAYSNLLRA KEVNKFQMAYSNLLRANMDGLKKRDKKNKT K E V L R A 1 1 2 0 0 1 1 0 0 0 2 1 1 1 0 1 0 0 1 1 0 0 14 1 1711.8716 P37108 P37108 75 88 SRP14 Signal recognition particle 14 kDa protein yes yes 2;3 1.2732E-06 171.05 By MS/MS By matching 7.25 0.829 2 2 4 6 2 51804000 0 41051000 10752000 3389 766 3527 13862;13863;13864;13865;13866;13867;13868;13869 11405;11406;11407;11408 11408 4 0 18674000 1648400 EVNLVLLLK IIGKLKVAGMLAVGKEVNLVLLLKNLSRDT MLAVGKEVNLVLLLKNLSRDTKTVTVNMTA K E V L K N 0 0 1 0 0 0 1 0 0 0 4 1 0 0 0 0 0 0 0 2 0 0 9 0 1039.6641 Q08188 Q08188 498 506 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.012267 87.323 By MS/MS 9 0.816 1 1 1 3 8626500 8626500 0 0 3390 1181 3528 13870;13871;13872 11409 11409 1 8329200 0 0 EVPAVPETLK ______________________________ EEKKKEVPAVPETLKKKRRNFAELKIKRLR K E V L K K 1 0 0 0 0 0 2 0 0 0 1 1 0 0 2 0 1 0 0 2 0 0 10 0 1081.6019 P18124 P18124 10 19 RPL7 60S ribosomal protein L7 yes yes 2 0.00035248 128 By matching By MS/MS By MS/MS 4.5 1.66 1 2 1 1 2 1 2 1 5 461050000 6263900 126210000 328580000 3391 594 3529 13873;13874;13875;13876;13877;13878;13879;13880 11410;11411;11412 11410 3 7281600 43689000 49656000 EVPAVPETLKK ______________________________ EKKKEVPAVPETLKKKRRNFAELKIKRLRK K E V K K K 1 0 0 0 0 0 2 0 0 0 1 2 0 0 2 0 1 0 0 2 0 0 11 1 1209.6969 P18124 P18124 10 20 RPL7 60S ribosomal protein L7 yes yes 3 0.010628 71.153 By MS/MS By MS/MS 3.83 1.95 1 1 1 1 2 5 1 91435000 0 47711000 43724000 3392 594 3530 13881;13882;13883;13884;13885;13886 11413;11414 11414 2 0 16915000 6541600 EVPEKLPEAADFGTTSSLHFVHMR PMTAFESEKEIELPKEVPEKLPEAADFGTT ADFGTTSSLHFVHMRGLPFQANAQDIINFF K E V M R G 2 1 0 1 0 0 3 1 2 0 2 1 1 2 2 2 2 0 0 2 0 0 24 1 2697.3221 Q12849 Q12849 383 406 GRSF1 G-rich sequence factor 1 yes yes 5 0.05348 25.803 By MS/MS 5 0 1 1 2868300 0 2868300 0 3393 1204 3531 13887 11415 11415 0 0 739360 0 EVPLNTIIFMGR RVTFKANRPFLVFIREVPLNTIIFMGRVAN FIREVPLNTIIFMGRVANPCVK________ R E V G R V 0 1 1 0 0 0 1 1 0 2 1 0 1 1 1 0 1 0 0 1 0 0 12 0 1388.7486 P01008 P01008 446 457 SERPINC1 Antithrombin-III yes yes 2 0.0016356 111.06 By MS/MS 9.5 0.5 1 1 2 13068000 13068000 0 0 3394 366 3532 13888;13889 11416;11417 11416 2 9394500 0 0 EVPQDQHLEAPADQSK SVRPQTALEENETQKEVPQDQHLEAPADQS VPQDQHLEAPADQSKGLLPP__________ K E V S K G 2 0 0 2 0 3 2 0 1 0 1 1 0 0 2 1 0 0 0 1 0 0 16 0 1790.8435 Q9Y3D9 Q9Y3D9 170 185 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 2 0.0025707 88.021 By MS/MS 7 0 1 1 4530500 0 0 4530500 3395 2272 3533 13890 11418 11418 1 0 0 803900 EVQAVSNLSGQGK AEKMALTLLDYLFHREVQAVSNLSGQGKHG HREVQAVSNLSGQGKHGKKQLDPLTIYGIR R E V G K H 1 0 1 0 0 2 1 2 0 0 1 1 0 0 0 2 0 0 0 2 0 0 13 0 1315.6732 Q8N9N5 Q8N9N5 263 275 BANP Protein BANP yes yes 2 8.4249E-05 154.24 By matching By MS/MS 4 0 2 1 1 10802000 8851700 0 1950100 3396 1618 3534 13891;13892 11419 11419 1 6905900 0 318520 EVQLAQIFEPLSR AKQAVHCIHAIFTNKEVQLAQIFEPLSRSL NKEVQLAQIFEPLSRSLNADVPEQLITPLV K E V S R S 1 1 0 0 0 2 2 0 0 1 2 0 0 1 1 1 0 0 0 1 0 0 13 0 1528.8249 Q29RF7 Q29RF7 751 763 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 1.3139E-06 163.84 By MS/MS By MS/MS 2 0 2 1 1 5561600 0 1506300 4055200 3397 1405 3535 13893;13894 11420;11421 11421 2 0 678320 916410 EVQTGWEDLR AGHPAQAVAINARLREVQTGWEDLRATMRR NARLREVQTGWEDLRATMRRREESLGEARR R E V L R A 0 1 0 1 0 1 2 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 10 0 1231.5833 O15020 O15020 1042 1051 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.057727 70.816 By MS/MS 1 0 1 1 1977000 0 1977000 0 3398 160 3536 13895 11422 11422 1 0 966330 0 EVQTNDLK QVRQIRKKMMEIMTREVQTNDLKEVVNKLI MMEIMTREVQTNDLKEVVNKLIPDSIGKDI R E V L K E 0 0 1 1 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 945.47673 P61247 P61247 175 182 RPS3A 40S ribosomal protein S3a yes yes 2 0.0017858 111.01 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 33715000 0 18718000 14997000 3399 988 3537 13896;13897;13898 11423;11424 11423 2 0 6386000 2243800 EVQTNDLKEVVNK QVRQIRKKMMEIMTREVQTNDLKEVVNKLI TREVQTNDLKEVVNKLIPDSIGKDIEKACQ R E V N K L 0 0 2 1 0 1 2 0 0 0 1 2 0 0 0 0 1 0 0 3 0 0 13 1 1514.794 P61247 P61247 175 187 RPS3A 40S ribosomal protein S3a yes yes 2;3 1.8791E-105 264.17 By matching By MS/MS By matching 5.62 1.11 2 1 3 2 1 6 1 193910000 3219400 174030000 16661000 3400 988 3538 13899;13900;13901;13902;13903;13904;13905;13906 11425;11426;11427 11426 3 2511700 61497000 2492600 EVSFDVELPK NVVTTRAVNHANTAKEVSFDVELPKTAFIT ANTAKEVSFDVELPKTAFITNFTLTIDGVT K E V P K T 0 0 0 1 0 0 2 0 0 0 1 1 0 1 1 1 0 0 0 2 0 0 10 0 1161.5918 CON__Q0V8M9;Q06033 CON__Q0V8M9 76 85 ITIH3 Inter-alpha-trypsin inhibitor heavy chain H3 yes no 2 0.0048603 98.233 By MS/MS By MS/MS By MS/MS 8.5 0.957 1 2 2 1 2 1 3 70484000 26661000 1972800 41851000 + 3401 75 3539 13907;13908;13909;13910;13911;13912 11428;11429;11430;11431;11432;11433;11434 11434 7 19068000 9980700 9062200 EVSFQSTGESEWK VGQEDEAESDIFSIREVSFQSTGESEWKDT IREVSFQSTGESEWKDTNYTLNTDSLDWAL R E V W K D 0 0 0 0 0 1 3 1 0 0 0 1 0 1 0 3 1 1 0 1 0 0 13 0 1512.6733 Q07021 Q07021 208 220 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 2 2.0978E-11 179.57 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 99402000 0 2130800 97271000 3402 1175 3540 13913;13914;13915 11435;11436;11437;11438 11437 4 0 1223500 16600000 EVSHLNALEER VCEFCQPRESELYQKEVSHLNALEERFSRL LYQKEVSHLNALEERFSRLWTQCQRCQGSL K E V E R F 1 1 1 0 0 0 3 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1295.647 P28340 P28340 1040 1050 POLD1 DNA polymerase delta catalytic subunit yes yes 2;3 0.028156 79.148 By MS/MS 2.25 1.09 1 2 1 4 5961300 0 0 5961300 3403 691 3541 13916;13917;13918;13919 11439;11440 11440 2 0 0 1270000 EVSSATNALR SRSLKMRGQAFVIFKEVSSATNALRSMQGF FVIFKEVSSATNALRSMQGFPFYDKPMRIQ K E V L R S 2 1 1 0 0 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 10 0 1046.5356 P09012 P09012 61 70 SNRPA U1 small nuclear ribonucleoprotein A yes yes 2 6.7123E-11 167.9 By MS/MS By MS/MS By MS/MS 5.5 0.866 1 3 2 1 1 90294000 21951000 34432000 33910000 3404 481 3542 13920;13921;13922;13923 11441;11442;11443 11442 3 25444000 11919000 5073300 EVSTNTAMIQTSK DAEEWFHTKSAELNKEVSTNTAMIQTSKTE NKEVSTNTAMIQTSKTEITELRRTLQGLEI K E V S K T 1 0 1 0 0 1 1 0 0 1 0 1 1 0 0 2 3 0 0 1 0 0 13 0 1408.6868 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 306 318 KRT13 Keratin, type I cytoskeletal 13 no no 2 5.1594E-17 187.42 By MS/MS 4 4.24 2 1 3 86822000 86822000 0 0 + 3405 57;548 3543;3544 13924;13925;13926 11444;11445;11446 11445 44 3 88014000 0 0 EVTEPLNLNPAK RRHQFRWSEIQKGVREVTEPLNLNPAKRPR GVREVTEPLNLNPAKRPRRQDWDGELYENG R E V A K R 1 0 2 0 0 0 2 0 0 0 2 1 0 0 2 0 1 0 0 1 0 0 12 0 1323.7034 Q8NFW8 Q8NFW8 189 200 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 3.4543E-06 161.92 By matching By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 1 1 36429000 17958000 3015800 15455000 3406 1644 3545 13927;13928;13929;13930 11447;11448 11448 2 21431000 1000800 2155700 EVTFVPGLYK QQMWVYDEDVGINYREVTFVPGLYKIFDEI GINYREVTFVPGLYKIFDEILVNAADNKQR R E V Y K I 0 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 1 0 1 2 0 0 10 0 1151.6227 P11388;Q02880 P11388 74 83 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.011733 87.696 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 217710000 0 61048000 156670000 3407 524;1150 3546 13931;13932;13933;13934 11449;11450;11451 11450 3 0 28771000 34057000 EVTTEFTVDAR VKVSGPGVEPHGVLREVTTEFTVDARSLTA GVLREVTTEFTVDARSLTATGGNHVTARVL R E V A R S 1 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0 3 0 0 2 0 0 11 0 1266.6092 Q14315 Q14315 1268 1278 FLNC Filamin-C yes yes 2 0.068973 69.276 By MS/MS 1 0 1 1 5952700 0 5952700 0 3408 1298 3547 13935 11452 11452 1 0 2909600 0 EVTWEVLEGEVEK KAKDANNGNLQLRNKEVTWEVLEGEVEKEA NKEVTWEVLEGEVEKEALKKIIEDQQESLN K E V E K E 0 0 0 0 0 0 5 1 0 0 1 1 0 0 0 0 1 1 0 3 0 0 13 0 1545.7563 P05455 P05455 300 312 SSB Lupus La protein yes yes 2 0.00051179 120.77 By MS/MS 4.5 0.5 1 1 2 19831000 0 0 19831000 3409 434 3548 13936;13937 11453 11453 1 0 0 3083800 EVVAEVVK TWKQEYVDYSESAKKEVVAEVVKAPQVVAE YSESAKKEVVAEVVKAPQVVAEAAKTAKRK K E V V K A 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 4 0 0 8 0 871.50148 O60832 O60832 426 433 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.003774 103.91 By MS/MS By MS/MS 4 0 2 1 1 18939000 0 0 18939000 3410 235 3549 13938;13939 11454;11455 11455 2 0 0 3093300 EVVAGSHELGQDYEHVTMLQER LNREVDDLEQWIAEREVVAGSHELGQDYEH ELGQDYEHVTMLQERFREFARDTGNIGQER R E V E R F 1 1 0 1 0 2 4 2 2 0 2 0 1 0 0 1 1 0 1 3 0 0 22 0 2526.1809 Q01082 Q01082 1718 1739 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3;4 2.5278E-110 252.91 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 85639000 0 9731000 75908000 3411 1128 3550 13940;13941;13942;13943;13944 11456;11457;11458;11459 11458 4 0 4756400 16392000 EVVEAHVDQK TAEAIKALGAKHCVKEVVEAHVDQKNKVVT KHCVKEVVEAHVDQKNKVVTTPAFMCETAL K E V Q K N 1 0 0 1 0 1 2 0 1 0 0 1 0 0 0 0 0 0 0 3 0 0 10 0 1152.5775 P0DPI2;A0A0B4J2D5 P0DPI2 224 233 yes no 2 0.05333 83.265 By MS/MS By matching 6.25 0.829 1 1 2 3 1 23080000 11165000 0 11915000 3412 5 3551 13945;13946;13947;13948 11460 11460 0 17644000 0 2114200 EVVEQGLLK LRLALKEDKFPRFWKEVVEQGLLKMQFWPA FPRFWKEVVEQGLLKMQFWPASYLCFRLLG K E V L K M 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5757 Q9BQG0 Q9BQG0 287 295 MYBBP1A Myb-binding protein 1A yes yes 2 0.0023814 104.21 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 51234000 0 21089000 30146000 3413 1885 3552 13949;13950;13951;13952;13953 11461;11462;11463 11462 3 0 9783100 6575000 EVVHTVSLHEIDVINSR TKFVQCPDGELQKRKEVVHTVSLHEIDVIN VHTVSLHEIDVINSRTQGFLALFSGDTGEI K E V S R T 0 1 1 1 0 0 2 0 2 2 1 0 0 0 0 2 1 0 0 4 0 0 17 0 1946.0221 Q9Y230 Q9Y230 237 253 RUVBL2 RuvB-like 2 yes yes 2;4 1.3172E-200 305.84 By MS/MS 4.33 0.471 2 1 3 24459000 0 0 24459000 3414 2228 3553 13954;13955;13956 11464;11465 11465 2 0 0 3917600 EVVKPLLVSTLGEK IKKRKTRETVSIEVKEVVKPLLVSTLGEKS KEVVKPLLVSTLGEKSGKGLKTCKSPGRKS K E V E K S 0 0 0 0 0 0 2 1 0 0 3 2 0 0 1 1 1 0 0 3 0 0 14 1 1510.897 P51608 P51608 318 331 MECP2 Methyl-CpG-binding protein 2 yes yes 2;3 0.0015426 92.925 By MS/MS By MS/MS 3.4 0.49 3 2 1 4 50666000 0 4420300 46246000 3415 896 3554 13957;13958;13959;13960;13961 11466;11467;11468 11468 3 0 1884400 8789700 EVVVYLDDNQKPPVGEGLNR LTNLNLDDIVHIRRKEVVVYLDDNQKPPVG LDDNQKPPVGEGLNRKAEVTLDGVWPTDKT K E V N R K 0 1 2 2 0 1 2 2 0 0 2 1 0 0 2 0 0 0 1 4 0 0 20 1 2240.1437 P52948 P52948 798 817 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 3.7705E-14 149.34 By MS/MS 1.5 0.5 1 1 2 17021000 0 0 17021000 3416 916 3555 13962;13963 11469 11469 1 0 0 3805300 EVYAAAAEVLGLILR YFQALVNNMSFVRYKEVYAAAAEVLGLILR EVYAAAAEVLGLILRYVMERKNILEESLCE K E V L R Y 4 1 0 0 0 0 2 1 0 1 3 0 0 0 0 0 0 0 1 2 0 0 15 0 1586.9032 P78527 P78527 2314 2328 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00044411 138.99 By MS/MS 1.5 0.5 1 1 2 2693900 0 0 2693900 3417 1089 3556 13964;13965 11470 11470 1 0 0 589340 EVYPEAR TWMDATLKELTSLVKEVYPEARKKGTHFNF KELTSLVKEVYPEARKKGTHFNFAIVFTDV K E V A R K 1 1 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 7 0 862.41848 O00422 O00422 75 81 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2 0.047315 77.984 By matching By MS/MS 7 0 2 1 1 22086000 0 4112000 17974000 3418 120 3557 13966;13967 11471 11471 1 0 2361100 3189400 EVYQQQQYGSGGR TVSGSKCEIKVAQPKEVYQQQQYGSGGRGN PKEVYQQQQYGSGGRGNRNRGNRGSGGGGG K E V G R G 0 1 0 0 0 4 1 3 0 0 0 0 0 0 0 1 0 0 2 1 0 0 13 0 1498.6801 Q99729 Q99729 233 245 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2 2.9276E-45 225.22 By MS/MS By MS/MS By MS/MS 5 1.47 1 1 2 3 3 2 3 6 3 136020000 13213000 88391000 34417000 3419 1861 3558 13968;13969;13970;13971;13972;13973;13974;13975;13976;13977;13978;13979 11472;11473;11474;11475;11476;11477;11478;11479;11480;11481 11480 10 16030000 30105000 4905900 EWFWDLATGTMK GECQAEGVLFFQGDREWFWDLATGTMKERS GDREWFWDLATGTMKERSWPAVGNCSSALR R E W M K E 1 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 2 2 0 0 0 0 12 0 1483.6806 P02790 P02790 167 178 HPX Hemopexin yes yes 2 0.032751 77.662 By MS/MS 9 0 1 1 356490 356490 0 0 3420 401 3559 13980 11482 11482 1 200100 0 0 EWLEGEDLSEELKK ALATVNAWAEQTGMKEWLEGEDLSEELKKE KEWLEGEDLSEELKKENPFLRQELLGWLAE K E W K K E 0 0 0 1 0 0 5 1 0 0 3 2 0 0 0 1 0 1 0 0 0 0 14 1 1703.8254 Q14008 Q14008 976 989 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 8.0993E-07 164.6 By MS/MS 1.6 0.49 2 3 5 56578000 0 0 56578000 3421 1279 3560 13981;13982;13983;13984;13985 11483;11484;11485;11486 11484 4 0 0 12434000 EWLIEVPGNADPLEDQFAK WRRRWGYQRARDDTKEWLIEVPGNADPLED EVPGNADPLEDQFAKRIQAKKERVAKNELN K E W A K R 2 0 1 2 0 1 3 1 0 1 2 1 0 1 2 0 0 1 0 1 0 0 19 0 2170.0582 Q15050 Q15050 155 173 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 7.3492E-09 146.79 By MS/MS 4.5 0.5 1 1 2 10308000 0 0 10308000 3422 1337 3561 13986;13987 11487;11488 11488 2 0 0 1575000 EWLLAHEGHR SSGAVGNYSGGLAVKEWLLAHEGHRLGKPG GLAVKEWLLAHEGHRLGKPGLGGSSGLAGA K E W H R L 1 1 0 0 0 0 2 1 2 0 2 0 0 0 0 0 0 1 0 0 0 0 10 0 1246.6207 P16455 P16455 166 175 MGMT Methylated-DNA--protein-cysteine methyltransferase yes yes 3 0.041537 51.092 By MS/MS 7 0 1 1 5908800 0 0 5908800 3423 579 3562 13988 11489 11489 1 0 0 1048500 EWLLGMLGAESAK RDFFELRLKYYGLRKEWLLGMLGAESAKLN RKEWLLGMLGAESAKLNNQARFILEKIDGK K E W A K L 2 0 0 0 0 0 2 2 0 0 3 1 1 0 0 1 0 1 0 0 0 0 13 0 1403.7119 P11388 P11388 1035 1047 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.00014328 151.15 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 72547000 0 4783400 67763000 3424 524 3563 13989;13990;13991;13992;13993 11490;11491;11492;11493 11492 4 0 2254100 14738000 EWLTNFMEDR AISLAFSKKQIDDRKEWLTNFMEDRRQRKL IDDRKEWLTNFMEDRRQRKLLGLPEDYLYG K E W D R R 0 1 1 1 0 0 2 0 0 0 1 0 1 1 0 0 1 1 0 0 0 0 10 0 1339.5867 P11388;Q02880 P11388 663 672 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 2.8805E-11 171.73 By matching By MS/MS 1.33 0.471 2 1 1 2 34552000 0 658170 33893000 3425 524;1150 3564 13994;13995;13996 11494;11495 11494 2 0 321700 7413300 EWLVGMLGAESTK KEFFDLRLSYYGLRKEWLVGMLGAESTKLN RKEWLVGMLGAESTKLNNQARFILEKIQGK K E W T K L 1 0 0 0 0 0 2 2 0 0 2 1 1 0 0 1 1 1 0 1 0 0 13 0 1419.7068 Q02880 Q02880 1056 1068 TOP2B DNA topoisomerase 2-beta yes yes 2 0.00038456 125.74 By MS/MS 1 0 1 1 8675500 0 0 8675500 3426 1150 3565 13997 11496 11496 1 0 0 1869300 EWNDSTSVQNPTR QDGDVIAPLITPQKKEWNDSTSVQNPTRLR KKEWNDSTSVQNPTRLREASKSRVQLFKDD K E W T R L 0 1 2 1 0 1 1 0 0 0 0 0 0 0 1 2 2 1 0 1 0 0 13 0 1532.6855 Q9Y3Z3 Q9Y3Z3 597 609 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes yes 2 5.2558E-06 163.38 By MS/MS 3 0 1 1 5507200 0 0 5507200 3427 2281 3566 13998 11497 11497 1 0 0 1068100 EWSQHINGASHSR PHLCSICDLPVHSNKEWSQHINGASHSRRC NKEWSQHINGASHSRRCQLLLEIYPEWNPD K E W S R R 1 1 1 0 0 1 1 1 2 1 0 0 0 0 0 3 0 1 0 0 0 0 13 0 1507.6916 P43243 P43243 305 317 MATR3 Matrin-3 yes yes 3 0.0022729 85.672 By matching By MS/MS 2.57 1.4 2 2 1 1 1 2 5 16928000 0 4913200 12015000 3428 812 3567 13999;14000;14001;14002;14003;14004;14005 11498;11499;11500 11499 3 0 2232200 2551100 EWYGWHFPELGK DDLDKELNNYIMRCREWYGWHFPELGKIIS RCREWYGWHFPELGKIISDNLTYCKCLQKV R E W G K I 0 0 0 0 0 0 2 2 1 0 1 1 0 1 1 0 0 2 1 0 0 0 12 0 1547.7197 Q9Y2X3 Q9Y2X3 185 196 NOP58 Nucleolar protein 58 yes yes 2;3 0.00049179 125.97 By matching By MS/MS 3.67 0.943 1 1 3 1 1 5 28258000 2749800 0 25508000 3429 2254 3568 14006;14007;14008;14009;14010;14011 11501;11502;11503;11504 11504 4 2145400 0 4357400 EWYGYHFPELVK DQLDKDINTFSMRVREWYGYHFPELVKIIN RVREWYGYHFPELVKIINDNATYCRLAQFI R E W V K I 0 0 0 0 0 0 2 1 1 0 1 1 0 1 1 0 0 1 2 1 0 0 12 0 1566.7507 O00567 O00567 191 202 NOP56 Nucleolar protein 56 yes yes 2;3 0.008138 97.277 By MS/MS 3 0 2 2 43604000 0 0 43604000 3430 130 3569 14012;14013 11505;11506 11506 2 0 0 8457100 EWYPSLATMQESLR WPSPEQLRELEAEEREWYPSLATMQESLRV REWYPSLATMQESLRVKQLAEEQKRREREQ R E W L R V 1 1 0 0 0 1 2 0 0 0 2 0 1 0 1 2 1 1 1 0 0 0 14 0 1709.8083 Q8TAE8 Q8TAE8 91 104 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 2 0.001622 105.46 By MS/MS 7 0 1 1 3628000 0 0 3628000 3431 1651 3570 14014 11507 11507 1 0 0 643760 EWYQETHEK MQVTLIPTHDSEVMREWYQETHEKQQDLNI DSEVMREWYQETHEKQQDLNIMVLASSSTV R E W E K Q 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 9 0 1248.5411 P46821 P46821 2431 2439 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 0.0010753 109.71 By MS/MS 6 0 2 2 12149000 0 0 12149000 3432 834 3571 14015;14016 11508;11509 11508 2 0 0 1817600 EYEAALNSK AKKESDLNGAQIKLREYEAALNSKDAALAT AQIKLREYEAALNSKDAALATALGDKKSLE R E Y S K D 2 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1023.4873 P20700 P20700 137 145 LMNB1 Lamin-B1 yes yes 2 0.00036769 138.26 By MS/MS By MS/MS 3.67 0.943 2 1 1 2 165570000 0 15871000 149700000 3433 619 3572 14017;14018;14019 11510;11511;11512 11511 3 0 6765900 28539000 EYEATLEECCAK RHPEYAVSVLLRLAKEYEATLEECCAKDDP LAKEYEATLEECCAKDDPHACYSTVFDKLK K E Y A K D 2 0 0 0 2 0 4 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 12 0 1501.6065 CON__P02769 CON__P02769 375 386 yes yes 2 3.7175E-25 196.88 By MS/MS 4 0 1 1 28847000 28847000 0 0 + 3434 45 3573 14020 11513 11513 1 22506000 0 0 EYEIPSNLTPADVFFR SDLVNTAILIALNKREYEIPSNLTPADVFF YEIPSNLTPADVFFREVSQVDTICECLLEH R E Y F R E 1 1 1 1 0 0 2 0 0 1 1 0 0 2 2 1 1 0 1 1 0 0 16 0 1896.9258 Q8WUM0 Q8WUM0 676 691 NUP133 Nuclear pore complex protein Nup133 yes yes 2 4.4082E-05 116.55 By MS/MS 1 0 1 1 2372300 0 0 2372300 3435 1675 3574 14021 11514 11514 1 0 0 511150 EYEISMLNQMSWLMK DFLFSQLQYLPFSNKEYEISMLNQMSWLMK EYEISMLNQMSWLMKTASIELRVTSLNRQR K E Y M K T 0 0 1 0 0 1 2 0 0 1 2 1 3 0 0 2 0 1 1 0 0 0 15 0 1901.8726 Q92621 Q92621 1104 1118 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.020341 67.93 By MS/MS 1 0 1 1 2913100 0 0 2913100 3436 1714 3575 14022 11515 11515 1 0 0 627670 EYENELAK ERLRVLLQEEGTRKREYENELAKVRNHYNE EEGTRKREYENELAKVRNHYNEEMSNLRNK R E Y A K V 1 0 1 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 8 0 994.46074 P15924 P15924 1187 1194 DSP Desmoplakin yes yes 2 0.0036854 104.21 By MS/MS By MS/MS By matching 2.83 2.41 2 2 1 1 3 2 1 18940000 11519000 4119000 3302900 3437 572 3576 14023;14024;14025;14026;14027;14028 11516;11517;11518 11516 3 11845000 1972000 640610 EYFADMKR KYYKGLGTSTSKEAKEYFADMKRHRIQFKY STSKEAKEYFADMKRHRIQFKYSGPEDDAA K E Y K R H 1 1 0 1 0 0 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 0 8 1 1058.4855 P11388 P11388 626 633 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0026456 114.78 By MS/MS 1 0 1 1 16126000 0 0 16126000 3438 524 3577 14029 11519 11519 1 0 0 3474600 EYFGGFGEVESIELPMDNK FVGGLSPDTPEEKIREYFGGFGEVESIELP GFGEVESIELPMDNKTNKRRGFCFITFKEE R E Y N K T 0 0 1 1 0 0 4 3 0 1 1 1 1 2 1 1 0 0 1 1 0 0 19 0 2159.9721 Q14103 Q14103 200 218 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 3.2353E-23 192.14 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 2 4 48208000 0 5991600 42216000 3439 1281 3578 14030;14031;14032;14033;14034;14035 11520;11521;11522;11523 11523 4 0 1676200 6329200 EYFSWEGAFQHVGK RKLDPGSEETQTLVREYFSWEGAFQHVGKA REYFSWEGAFQHVGKAFNQGKIFK______ R E Y G K A 1 0 0 0 0 1 2 2 1 0 0 1 0 2 0 1 0 1 1 1 0 0 14 0 1683.7682 P26641 P26641 415 428 EEF1G Elongation factor 1-gamma yes yes 2;3 8.9656E-05 139.43 By matching By MS/MS By MS/MS 4.31 2.05 2 1 1 2 4 1 1 1 1 2 10 210370000 494250 10896000 198980000 3440 674 3579 14036;14037;14038;14039;14040;14041;14042;14043;14044;14045;14046;14047;14048 11524;11525;11526;11527;11528;11529 11525 6 494250 2808700 29591000 EYIQILER WGHLKELDSQLNEPREYIQILERRRAFSRW SQLNEPREYIQILERRRAFSRWLSCTATPQ R E Y E R R 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1062.571 P52948 P52948 1295 1302 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 0.00021081 138.9 By matching By MS/MS 1.5 0.5 1 1 1 1 12775000 0 4477800 8296900 3441 916 3580 14049;14050 11530 11530 1 0 2188700 1874900 EYLGANWTLEK QTSVATLDETEELPREYLGANWTLEKVFEE ELPREYLGANWTLEKVFEELQATDKKRVLE R E Y E K V 1 0 1 0 0 0 2 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 11 0 1322.6507 P57740 P57740 481 491 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.032052 78.098 By MS/MS 2 0 1 1 9634900 0 0 9634900 3442 956 3581 14051 11531 11531 1 0 0 2177300 EYLLPPETQPLHEVVYFSAAHALR VLRENVVNFIDCLVREYLLPPETQPLHEVV PLHEVVYFSAAHALREHLNAAPRIALHTAL R E Y L R E 3 1 0 0 0 1 3 0 2 0 4 0 0 1 3 1 1 0 2 2 0 0 24 0 2779.4334 Q9UBD5 Q9UBD5 565 588 ORC3 Origin recognition complex subunit 3 yes yes 4 5.6264E-06 77.045 By MS/MS 3 0 1 1 4154700 0 0 4154700 3443 2130 3582 14052 11532 11532 1 0 0 805820 EYLSEEVQAVHK NPTIVNFPITNVDLREYLSEEVQAVHKNTT DLREYLSEEVQAVHKNTTYDLIANIVHDGK R E Y H K N 1 0 0 0 0 1 3 0 1 0 1 1 0 0 0 1 0 0 1 2 0 0 12 0 1430.7042 Q53GS9 Q53GS9 482 493 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2 0.00032403 129.38 By MS/MS 3 0 1 1 21108000 0 0 21108000 3444 1426 3583 14053 11533 11533 1 0 0 4094000 EYLTTLGQR EAVILLQEIGVLDQREYLTTLGQRLAHIST GVLDQREYLTTLGQRLAHISTDPRLAKAIV R E Y Q R L 0 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1079.5611 Q7L2E3 Q7L2E3 865 873 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.0043007 98.299 By MS/MS 1.5 0.5 1 1 2 13468000 0 0 13468000 3445 1522 3584 14054;14055 11534;11535 11535 2 0 0 3043500 EYMESFEGIFK KFFGLLAGRFCMLKKEYMESFEGIFKEQYD MLKKEYMESFEGIFKEQYDTIHRLETNKLR K E Y F K E 0 0 0 0 0 0 3 1 0 1 0 1 1 2 0 1 0 0 1 0 0 0 11 0 1378.6115 Q9HCG8 Q9HCG8 520 530 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 2 0.038886 76.465 By MS/MS 2 0 1 1 4522500 0 0 4522500 3446 2012 3585 14056 11536 11536 1 0 0 1022000 EYNEDEDPAAR TSAPPSKSRHHEMPREYNEDEDPAARRRKK EMPREYNEDEDPAARRRKKKSYYAKLRQQE R E Y A R R 2 1 1 2 0 0 3 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 11 0 1307.5266 Q13123 Q13123 63 73 IK Protein Red yes yes 2 0.001995 108.98 By MS/MS 3 0 1 1 5553600 0 0 5553600 3447 1222 3586 14057 11537 11537 1 0 0 1077100 EYNEFAEVFLK ARLFERYGSPGNVSKEYNEFAEVFLKAFAV NVSKEYNEFAEVFLKAFAVGVQQVLLKVLY K E Y L K A 1 0 1 0 0 0 3 0 0 0 1 1 0 2 0 0 0 0 1 1 0 0 11 0 1387.666 O95373 O95373 284 294 IPO7 Importin-7 yes yes 2 0.0054973 100.02 By MS/MS 2 0 1 1 5599900 0 0 5599900 3448 322 3587 14058 11538 11538 1 0 0 1265500 EYPDAQGFAADVR HPMDLSTVKRKMDGREYPDAQGFAADVRLM GREYPDAQGFAADVRLMFSNCYKYNPPDHE R E Y V R L 3 1 0 2 0 1 1 1 0 0 0 0 0 1 1 0 0 0 1 1 0 0 13 0 1437.6525 Q15059 Q15059 369 381 BRD3 Bromodomain-containing protein 3 yes yes 2 0.00028583 134.84 By matching By MS/MS 2.33 0.471 2 1 1 2 42623000 0 4205500 38418000 3449 1342 3588 14059;14060;14061 11539;11540 11539 2 0 1893800 8361000 EYPFILDAFQR EDYLPLKPRVGKAAKEYPFILDAFQREAIQ KAAKEYPFILDAFQREAIQCVDNNQSVLVS K E Y Q R E 1 1 0 1 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 11 0 1397.698 P42285 P42285 135 145 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 4.9173E-10 172.25 By MS/MS 2 0 1 1 8103300 0 0 8103300 3450 800 3589 14062 11541 11541 1 0 0 1831200 EYQDAFLFNELK YSLFLDESRSTQYMKEYQDAFLFNELKGET YMKEYQDAFLFNELKGETMDTS________ K E Y L K G 1 0 1 1 0 1 2 0 0 0 2 1 0 2 0 0 0 0 1 0 0 0 12 0 1515.7246 Q9Y230 Q9Y230 445 456 RUVBL2 RuvB-like 2 yes yes 2 0.019077 85.355 By MS/MS 4.5 0.5 1 1 2 22100000 0 0 22100000 3451 2228 3590 14063;14064 11542 11542 1 0 0 3491100 EYQDLLNVK DEIQNMKEEMARHLREYQDLLNVKMALDIE MARHLREYQDLLNVKMALDIEIATYRKLLE R E Y V K M 0 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 9 0 1120.5764 P08670;P17661;Q16352;P07196;P07197 P08670 382 390 VIM;DES;INA;NEFL;NEFM Vimentin;Desmin;Alpha-internexin;Neurofilament light polypeptide;Neurofilament medium polypeptide no no 2 0.0071517 93.195 By MS/MS By MS/MS 5 2.55 1 1 1 3 2 1 1 1 1 4 8 1485100000 0 140670000 1344500000 3452 476;453;454 3591 14065;14066;14067;14068;14069;14070;14071;14072;14073;14074;14075;14076 11543;11544;11545;11546;11547;11548;11549;11550 11543 8 0 39005000 231120000 EYQELMNTK EALQKAKQDMARLLREYQELMNTKLALDVE MARLLREYQELMNTKLALDVEIATYRKLLE R E Y T K L 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 9 0 1154.5278 CON__P13647;P13647 CON__P13647 452 460 KRT5 Keratin, type II cytoskeletal 5 no no 1;2 1.7219E-07 160.54 By MS/MS By MS/MS By MS/MS 4.5 3.01 3 4 2 4 1 2 2 2 9 4 7 524380000 417790000 13600000 92992000 + 3453 58 3592;3593 14077;14078;14079;14080;14081;14082;14083;14084;14085;14086;14087;14088;14089;14090;14091;14092;14093;14094;14095;14096 11551;11552;11553;11554;11555;11556;11557;11558;11559;11560;11561;11562;11563;11564 11557 45 14 409140000 6154700 48215000 EYQELMNVK AALQRAKQDMARQLREYQELMNVKLALDIE MARQLREYQELMNVKLALDIEIATYRKLLE R E Y V K L 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 9 0 1152.5485 P02538;CON__P02538;CON__P04259;CON__P05787;P05787;CON__H-INV:HIT000292931;CON__P48668;P48668;CON__P50446 CON__P05787 373 381 KRT6A;KRT8;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6C no no 2 0.00045807 136.8 By MS/MS By MS/MS By MS/MS 5.25 2.7 2 2 3 4 3 2 2 2 2 2 8 5 11 1411500000 130360000 307720000 973440000 + 3454 49;68;37;47;69 3594;3595 14097;14098;14099;14100;14101;14102;14103;14104;14105;14106;14107;14108;14109;14110;14111;14112;14113;14114;14115;14116;14117;14118;14119;14120 11565;11566;11567;11568;11569;11570;11571;11572;11573;11574;11575;11576;11577;11578;11579;11580;11581;11582;11583;11584 11572 15 20 124050000 96485000 190100000 EYQELMSVK AALQQAKEELARMLREYQELMSVKLALDIE LARMLREYQELMSVKLALDIEIATYRKLLE R E Y V K L 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 9 0 1125.5376 CON__P19013;P19013 CON__P19013 495 503 KRT4 Keratin, type II cytoskeletal 4 no no 2 0.023519 79.906 By MS/MS 1 0 1 1 24986000 24986000 0 0 + 3455 61 3596 14121 11585 11585 1 24986000 0 0 EYQTQLIQR FNALFVRPHIRGAIREYQTQLIQRVKDDIE IRGAIREYQTQLIQRVKDDIESLHDKFKVQ R E Y Q R V 0 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1177.6091 Q14204 Q14204 603 611 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 2.9513E-05 150.17 By MS/MS 1 0 1 1 9600900 0 9600900 0 3456 1292 3597 14122 11586 11586 1 0 4692800 0 EYSGFAGVSRPR KKEREEEFKTHHEMKEYSGFAGVSRPRGTF EMKEYSGFAGVSRPRGTFFRIRGRGRARGV K E Y P R G 1 2 0 0 0 0 1 2 0 0 0 0 0 1 1 2 0 0 1 1 0 0 12 1 1324.6524 Q9NYF8 Q9NYF8 785 796 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.042758 60.301 By MS/MS 1.5 0.5 1 1 2 8824500 0 0 8824500 3457 2097 3598 14123;14124 11587 11587 0 0 0 1958700 EYSLQVLK AVAVALKQACTPMFREYSLQVLKNARAMAD ACTPMFREYSLQVLKNARAMADALLERGYS R E Y L K N 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 8 0 978.5386 P34897 P34897 349 356 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.0027738 107.32 By matching By MS/MS By MS/MS 4.6 0.8 3 1 1 1 3 1 66811000 3268100 30929000 32614000 3458 734 3599 14125;14126;14127;14128;14129 11588;11589;11590 11588 3 2549700 9830600 5326900 EYSSELNAPSQESDSHPR RRDQMIKGAIEVLIREYSSELNAPSQESDS SELNAPSQESDSHPRKKKKEKKEDIFRRFP R E Y P R K 1 1 1 1 0 1 3 0 1 0 1 0 0 0 2 5 0 0 1 0 0 0 18 0 2031.877 P49756 P49756 217 234 RBM25 RNA-binding protein 25 yes yes 3 6.4077E-09 113.98 By MS/MS 2 0.816 1 1 1 3 30729000 0 0 30729000 3459 866 3600 14130;14131;14132 11591 11591 1 0 0 6689600 EYTINIHK EKKKGRSAINEVVTREYTINIHKRIHGVGF INEVVTREYTINIHKRIHGVGFKKRAPRAL R E Y H K R 0 0 1 0 0 0 1 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 8 0 1016.5291 P62899 P62899 24 31 RPL31 60S ribosomal protein L31 yes yes 2 0.012262 90.986 By matching By MS/MS By matching 8.25 1.09 1 2 1 1 1 2 85213000 558750 27853000 56801000 3460 1048 3601 14133;14134;14135;14136 11592 11592 1 1204200 12672000 17357000 EYTPFPPPQPESQIDKELASGEYFLK NVNKRKEPKKKTVKKEYTPFPPPQPESQID SQIDKELASGEYFLKANQKKRQKMEAIKAK K E Y L K A 1 0 0 1 0 2 4 1 0 1 2 2 0 2 5 2 1 0 2 0 0 0 26 1 3009.4648 Q13601 Q13601 265 290 KRR1 KRR1 small subunit processome component homolog yes yes 3 0.060329 35.55 By MS/MS 5 0 1 1 15735000 0 0 15735000 3461 1261 3602 14137 11593 11593 0 0 0 2194800 EYVDLER FPASWQGEQRQTPSREYVDLEREAGKVYLK EQRQTPSREYVDLEREAGKVYLKAPMILNG R E Y E R E 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 922.43961 Q13951 Q13951 84 90 CBFB Core-binding factor subunit beta yes yes 2 0.038064 85.265 By MS/MS 7 0 1 1 7105000 0 0 7105000 3462 1277 3603 14138 11594 11594 1 0 0 1260700 EYWMDPEGEMKPGR VSVRDFKGKVLIDIREYWMDPEGEMKPGRK REYWMDPEGEMKPGRKGISLNPEQWSQLKE R E Y G R K 0 1 0 1 0 0 3 2 0 0 0 1 2 0 2 0 0 1 1 0 0 0 14 1 1723.7334 P53999 P53999 87 100 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2;3 2.1883E-44 223.31 By MS/MS 8.5 0.957 1 2 2 1 6 86604000 0 0 86604000 3463 926 3604 14139;14140;14141;14142;14143;14144 11595;11596;11597 11596 3 0 0 16078000 EYWNDPELDEGER EIRNPDSLKELTHLKEYWNDPELDEGERFL LKEYWNDPELDEGERFLRDYILNKRYEEEE K E Y E R F 0 1 1 2 0 0 4 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 13 0 1650.6798 Q8N9T8 Q8N9T8 226 238 KRI1 Protein KRI1 homolog yes yes 2 3.7457E-07 177.78 By MS/MS 2 0 1 1 6523600 0 0 6523600 3464 1619 3605 14145 11598 11598 1 0 0 1474200 EYYTQNMER GLSFKDDMPKSDVNKEYYTQNMEREISNSD KSDVNKEYYTQNMEREISNSDGTRPVGMLG K E Y E R E 0 1 1 0 0 1 2 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 9 0 1232.5132 Q9NW64 Q9NW64 115 123 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2 0.01992 82.279 By MS/MS 7 0 1 1 4617500 0 0 4617500 3465 2076 3606 14146 11599 11599 1 0 0 819350 FAAATGATPIAGR SVISSRNTGQRAVLKFAAATGATPIAGRFT LKFAAATGATPIAGRFTPGTFTNQIQAAFR K F A G R F 5 1 0 0 0 0 0 2 0 1 0 0 0 1 1 0 2 0 0 0 0 0 13 0 1202.6408 P08865 P08865 90 102 RPSA 40S ribosomal protein SA yes yes 2 6.2586E-17 185.6 By MS/MS By MS/MS By MS/MS 5.73 1.81 1 2 2 3 2 1 1 7 3 329630000 25885000 222260000 81484000 3466 480 3607 14147;14148;14149;14150;14151;14152;14153;14154;14155;14156;14157 11600;11601;11602;11603;11604;11605;11606;11607;11608;11609;11610;11611 11600 11 34466000 102610000 12138000 FAAFFGNVPIFHIPGR DLKLIVTSATMDAEKFAAFFGNVPIFHIPG AAFFGNVPIFHIPGRTFPVDILFSKTPQED K F A G R T 2 1 1 0 0 0 0 2 1 2 0 0 0 4 2 0 0 0 0 1 0 0 16 0 1788.9464 Q92620 Q92620 692 707 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 3 0.0065216 58.071 By MS/MS 2 0 1 1 1285500 0 1285500 0 3467 1713 3608 14158 11612 11612 1 0 578880 0 FAAHLIAGAPSEGSGALKPELSR ELHALRRHYHPIVQRFAAHLIAGAPSEGSG APSEGSGALKPELSRRSATELFEAYSMAEM R F A S R R 5 1 0 0 0 0 2 3 1 1 3 1 0 1 2 3 0 0 0 0 0 0 23 1 2278.207 Q8WTT2 Q8WTT2 707 729 NOC3L Nucleolar complex protein 3 homolog yes yes 3;4 4.6149E-22 160.3 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 123920000 0 8050400 115870000 3468 1670 3609 14159;14160;14161;14162;14163 11613;11614;11615;11616 11614 4 0 3625200 25727000 FAALDNEEEDKEEEIIK GKEEKSKGKAKPQNKFAALDNEEEDKEEEI ALDNEEEDKEEEIIKEKEPPKQGKEKAKKA K F A I K E 2 0 1 2 0 0 6 0 0 2 1 2 0 1 0 0 0 0 0 0 0 0 17 1 2020.9477 Q8NE71 Q8NE71 193 209 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2;3 5.8235E-05 129.71 By MS/MS 2.33 0.471 2 1 3 86448000 0 0 86448000 3469 1638 3610 14164;14165;14166 11617;11618 11617 2 0 0 19432000 FAALDNEEEDKEEEIIKEK GKEEKSKGKAKPQNKFAALDNEEEDKEEEI DNEEEDKEEEIIKEKEPPKQGKEKAKKAEQ K F A E K E 2 0 1 2 0 0 7 0 0 2 1 3 0 1 0 0 0 0 0 0 0 0 19 2 2278.0853 Q8NE71 Q8NE71 193 211 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 4 0.0032338 59.281 By MS/MS 2 0 1 1 11003000 0 0 11003000 3470 1638 3611 14167 11619 11619 1 0 0 2486500 FAALITVLALAEK YQILLKTRDSSPKVRFAALITVLALAEKLK VRFAALITVLALAEKLKENYIVLLPESIPF R F A E K L 4 0 0 0 0 0 1 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1358.8173 Q9H583 Q9H583 2082 2094 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.0044621 101.93 By MS/MS 1 0 1 1 7452500 0 0 7452500 3471 1984 3612 14168 11620 11620 1 0 0 1605800 FAANPNQNK NGHKPPGSSEPITVKFAANPNQNKNVALLS EPITVKFAANPNQNKNVALLSQLYHSPARR K F A N K N 2 0 3 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 9 0 1002.4883 Q15717 Q15717 183 191 ELAVL1 ELAV-like protein 1 yes yes 2 0.0064748 94.407 By MS/MS By matching 6 0 2 1 1 7002400 0 6666000 336480 3472 1380 3613 14169;14170 11621 11621 1 0 2307500 50340 FAASGGFLHHMAGLSSSK EDDDGIASVPTKQMKFAASGGFLHHMAGLS SGGFLHHMAGLSSSKLSMSKALPLTKVVQN K F A S K L 3 0 0 0 0 0 0 3 2 0 2 1 1 2 0 4 0 0 0 0 0 0 18 0 1803.8726 Q9BY77 Q9BY77 201 218 POLDIP3 Polymerase delta-interacting protein 3 yes yes 2;4 1.5241E-22 188.4 By matching By matching By MS/MS 4.14 0.639 1 4 2 2 1 4 72934000 26336000 2271300 44327000 3473 1933 3614 14171;14172;14173;14174;14175;14176;14177 11622;11623;11624 11622 3 28482000 753780 6734000 FACHSASLTVR ELDNMPLRGKQLRVRFACHSASLTVRNLPQ LRVRFACHSASLTVRNLPQYVSNELLEEAF R F A V R N 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 1 0 0 11 0 1247.6081 Q15233 Q15233 143 153 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 3.6217E-05 147.2 By MS/MS By MS/MS By MS/MS 4 0.739 3 5 3 1 4 6 336920000 24589000 39336000 272990000 3474 1351 3615 14178;14179;14180;14181;14182;14183;14184;14185;14186;14187;14188 11625;11626;11627;11628;11629;11630;11631;11632 11632 8 19184000 12942000 47149000 FADAASLLLSLMTSR LGKYREFHRMYGEKRFADAASLLLSLMTSR FADAASLLLSLMTSRIAPRSFWMTLLTDAL R F A S R I 3 1 0 1 0 0 0 0 0 0 4 0 1 1 0 3 1 0 0 0 0 0 15 0 1594.8389 Q9BW27 Q9BW27 553 567 NUP85 Nuclear pore complex protein Nup85 yes yes 2;3 2.3777E-11 174.9 By matching By MS/MS 3.2 0.748 1 2 2 1 4 30631000 0 85543 30545000 3475 1920 3616 14189;14190;14191;14192;14193 11633;11634;11635 11633 3 0 38521 5905200 FADFTVYR RKLEMEDYPSFMAKRFADFTVYRNRTLQKW PSFMAKRFADFTVYRNRTLQKWHDKTKLAS R F A Y R N 1 1 0 1 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 1 0 0 8 0 1017.492 Q9NY61 Q9NY61 356 363 AATF Protein AATF yes yes 2 0.00027267 134.06 By matching By MS/MS 3 0 2 1 1 10703000 975150 0 9727400 3476 2094 3617 14194;14195 11636 11636 1 1125100 0 1886700 FADLSEAANR AAKNLQEAEEWYKSKFADLSEAANRNNDAL WYKSKFADLSEAANRNNDALRQAKQESTEY K F A N R N 3 1 1 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1092.52 P08670 P08670 295 304 VIM Vimentin yes yes 2 3.6737E-63 238.31 By MS/MS By MS/MS By MS/MS 3.88 1.73 2 2 2 4 3 2 1 1 8 7 3447300000 47280000 991520000 2408500000 3477 476 3618 14196;14197;14198;14199;14200;14201;14202;14203;14204;14205;14206;14207;14208;14209;14210;14211 11637;11638;11639;11640;11641;11642;11643;11644;11645;11646;11647;11648;11649;11650;11651;11652;11653;11654;11655 11644 19 36886000 328870000 386380000 FADQHVPGSPFSVK TYCPTEPGNYIINIKFADQHVPGSPFSVKV KFADQHVPGSPFSVKVTGEGRVKESITRRR K F A V K V 1 0 0 1 0 1 0 1 1 0 0 1 0 2 2 2 0 0 0 2 0 0 14 0 1514.7518 P21333 P21333 2120 2133 FLNA Filamin-A yes yes 3 0.0091171 64.52 By MS/MS 1 0 1 1 11044000 0 11044000 0 3478 623 3619 14212 11656 11656 1 0 5398100 0 FAEAFEAIPR YGETCPGLEQYAIKKFAEAFEAIPRALAEN YAIKKFAEAFEAIPRALAENSGVKANEVIS K F A P R A 3 1 0 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 10 0 1149.5819 P50990 P50990 441 450 CCT8 T-complex protein 1 subunit theta yes yes 2 1.2566E-05 152.47 By matching By MS/MS By MS/MS 4 0 3 1 1 1 19755000 5105000 0 14650000 3479 885 3620 14213;14214;14215 11657;11658 11658 2 3982800 0 2392800 FAEALGSTEAK ITKLRKMVDQLFCKKFAEALGSTEAKAVPY FCKKFAEALGSTEAKAVPYQKFEAHPNDLY K F A A K A 3 0 0 0 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1122.5557 P78347 P78347 478 488 GTF2I General transcription factor II-I yes yes 2 0.0084099 94.309 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 13779000 0 3364100 10414000 3480 1085 3621 14216;14217;14218 11659;11660 11659 2 0 1434100 2102800 FAEFQYLQPGPPR AQTGIDLSGCTKWWRFAEFQYLQPGPPRRL WRFAEFQYLQPGPPRRLQTVVVYLPDVWTI R F A P R R 1 1 0 0 0 2 1 1 0 0 1 0 0 2 3 0 0 0 1 0 0 0 13 0 1548.7725 Q8N163 Q8N163 405 417 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 0.00016885 150.08 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 17523000 0 2691800 14831000 3481 1598 3622 14219;14220;14221 11661;11662;11663 11662 2 0 1212200 3206400 FAELETILGDIDR KFLEFGPENCTSWIKFAELETILGDIDRAR IKFAELETILGDIDRARAIYELAISQPRLD K F A D R A 1 1 0 2 0 0 2 1 0 2 2 0 0 1 0 0 1 0 0 0 0 0 13 0 1490.7617 Q9BZJ0 Q9BZJ0 646 658 CRNKL1 Crooked neck-like protein 1 yes yes 2 0.00033196 143.24 By MS/MS 3 0 1 1 5688500 0 0 5688500 3482 1944 3623 14222 11664 11664 1 0 0 1103300 FAEQTLR RQKQAADAEMEKHKKFAEQTLRQKAQVEQE AEMEKHKKFAEQTLRQKAQVEQELTTLRLQ K F A L R Q 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 863.45012 Q15149 Q15149 2310 2316 PLEC Plectin yes yes 2 0.0031037 141.98 By MS/MS 1 0 1 1 7313200 0 7313200 0 3483 1348 3624 14223 11665 11665 1 0 3574600 0 FAEVECLAESHQHLSK MSEDPSHPSMALNTRFAEVECLAESHQHLS AEVECLAESHQHLSKESMAGNKPANAVLHK R F A S K E 2 0 0 0 1 1 3 0 2 0 2 1 0 1 0 2 0 0 0 1 0 0 16 0 1883.8836 Q14839 Q14839 1822 1837 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3;4 0.011431 53.861 By MS/MS 1 0 2 2 25495000 0 0 25495000 3484 1321 3625 14224;14225 11666;11667 11667 2 0 0 5493400 FAEVTQEVEVARPVDK NPKAEDYEENLQVMRFAEVTQEVEVARPVD AEVTQEVEVARPVDKAICGLTPGRRYRNQP R F A D K A 2 1 0 1 0 1 3 0 0 0 0 1 0 1 1 0 1 0 0 4 0 0 16 1 1815.9367 Q02241 Q02241 429 444 KIF23 Kinesin-like protein KIF23 yes yes 2;3 8.1266E-12 180.28 By MS/MS 2 0 2 2 20721000 0 0 20721000 3485 1145 3626 14226;14227 11668;11669 11669 2 0 0 4682400 FAEYGEIK TGVHEEATEEDIHDKFAEYGEIKNIHLNLD EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG K F A I K N 1 0 0 0 0 0 2 1 0 1 0 1 0 1 0 0 0 0 1 0 0 0 8 0 955.4651 Q9Y5S9 Q9Y5S9 93 100 RBM8A RNA-binding protein 8A yes yes 2 0.018852 85.212 By matching By MS/MS 7.33 0.471 2 1 1 2 78943000 0 5027500 73916000 3486 2302 3627 14228;14229;14230 11670 11670 1 0 2886800 13076000 FAGLHFFNPVPVMK LQITSIANATTRQDRFAGLHFFNPVPVMKL RFAGLHFFNPVPVMKLVEVIKTPMTSQKTF R F A M K L 1 0 1 0 0 0 0 1 1 0 1 1 1 3 2 0 0 0 0 2 0 0 14 0 1602.8381 Q16836 Q16836 166 179 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes yes 3 0.037345 46.358 By MS/MS 6 0 1 1 1569300 0 1569300 0 3487 1401 3628 14231 11671 11671 1 0 543250 0 FAGYVTSIAATELEDDDDDYSSSTSLLGQK TGYYDQEIYGGSDSRFAGYVTSIAATELED DDDDYSSSTSLLGQKKPGYHAPVALLNDIP R F A Q K K 3 0 0 5 0 1 2 2 0 1 3 1 0 1 0 5 3 0 2 1 0 0 30 0 3197.4412 O75533 O75533 51 80 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.0016886 35.66 By MS/MS 2 0 1 1 4423900 0 0 4423900 3488 270 3629 14232 11672 11672 1 0 0 999710 FAHIDGDHLTLLNVYHAFK RPTEAKKAADEAKMRFAHIDGDHLTLLNVY DGDHLTLLNVYHAFKQNHESVQWCYDNFIN R F A F K Q 2 0 1 2 0 0 0 1 3 1 3 1 0 2 0 0 1 0 1 1 0 0 19 0 2210.1273 O43143 O43143 617 635 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 5 0.020601 40.179 By MS/MS 3.5 0.5 1 1 2 13572000 0 0 13572000 3489 186 3630 14233;14234 11673 11673 1 0 0 2582600 FAHNVVTTR IEVYSTKVNCKVTSRFAHNVVTTRAVNHAN CKVTSRFAHNVVTTRAVNHANTAKEVSFDV R F A T R A 1 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 2 0 0 9 0 1043.5512 CON__Q0V8M9 CON__Q0V8M9 58 66 yes yes 2 0.0024613 103.87 By MS/MS By MS/MS 8.25 1.39 1 2 1 2 2 5 3 68070000 0 16419000 51651000 + 3490 75 3631 14235;14236;14237;14238;14239;14240;14241;14242 11674;11675;11676;11677 11675 4 0 15979000 17551000 FAIETVK SAPNRKSFTKKKSNKFAIETVKNLLESLKG FTKKKSNKFAIETVKNLLESLKGNRTENFT K F A V K N 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 806.4538 Q9NVV4 Q9NVV4 549 555 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.044859 78.616 By MS/MS 3 0.816 1 1 1 3 19616000 0 0 19616000 3491 2072 3632 14243;14244;14245 11678 11678 1 0 0 3465800 FAIGSQVSEHSIIK DQEMLSRIEKQLKRRFAIGSQVSEHSIIKD RFAIGSQVSEHSIIKDFTKQKYPEHAIHKV R F A I K D 1 0 0 0 0 1 1 1 1 3 0 1 0 1 0 3 0 0 0 1 0 0 14 0 1514.8093 P33992 P33992 683 696 MCM5 DNA replication licensing factor MCM5 yes yes 3 0.0060287 68.033 By MS/MS 3 0 1 1 7793900 0 7793900 0 3492 732 3633 14246 11679 11679 1 0 3322500 0 FAIQDISVEETSAK NAKMTLGMIWTIILRFAIQDISVEETSAKE RFAIQDISVEETSAKEGLLLWCQRKTAPYK R F A A K E 2 0 0 1 0 1 2 0 0 2 0 1 0 1 0 2 1 0 0 1 0 0 14 0 1536.7672 O43707;Q08043;P12814;P35609 O43707 153 166 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 2 1.7228E-07 170.89 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 101480000 0 48644000 52836000 3493 210;540 3634 14247;14248;14249 11680;11681 11681 2 0 22038000 11940000 FAIVMMGR QSLLDIQEKEFEKFKFAIVMMGRHQYINED KEFEKFKFAIVMMGRHQYINEDEYEVNLKD K F A G R H 1 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 1 0 0 8 0 923.47211 Q93009 Q93009 1040 1047 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.00028693 132.94 By MS/MS 2 0.816 1 1 1 3 8659100 0 0 8659100 3494 1738 3635 14250;14251;14252 11682 11682 1 0 0 1869000 FALDFGLVPAPPAGTR GYSSMCGHAVLALGRFALDFGLVPAPPAGT ALDFGLVPAPPAGTREARVNIHCPCGLVTA R F A T R E 3 1 0 1 0 0 0 2 0 0 2 0 0 2 3 0 1 0 0 1 0 0 16 0 1627.8722 Q96EM0 Q96EM0 114 129 L3HYPDH Trans-3-hydroxy-L-proline dehydratase yes yes 2 1.2108E-12 99.5 By MS/MS 6 0 1 1 0 0 0 0 3495 1775 3636 14253 11683 11683 1 0 0 0 FALEVPGLR HVLEGLAASGLRSIRFALEVPGLRSVVAND GLRSIRFALEVPGLRSVVANDASTRAVDLI R F A L R S 1 1 0 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 0 1 0 0 9 0 1000.5706 Q9NXH9 Q9NXH9 170 178 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase yes yes 2 0.033506 77.058 By MS/MS 3 0 1 1 0 0 0 0 3496 2090 3637 14254 11684 11684 1 0 0 0 FALGSVVAVTK EMVLPGFPDADSFVKFALGSVVAVTKASGG SFVKFALGSVVAVTKASGGLPQFGDEYDFY K F A T K A 2 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 3 0 0 11 0 1090.6386 Q01780 Q01780 38 48 EXOSC10 Exosome component 10 yes yes 2 0.029937 78.655 By matching By MS/MS By MS/MS 2 0 3 1 1 1 12552000 799730 3604300 8147600 3497 1138 3638 14255;14256;14257 11685;11686 11686 2 963570 1623100 1841200 FALPQYLK NRLNFLKKISQRYQKFALPQYLKTVYQHQK ISQRYQKFALPQYLKTVYQHQKAMKPWIQP K F A L K T 1 0 0 0 0 1 0 0 0 0 2 1 0 1 1 0 0 0 1 0 0 0 8 0 978.55385 CON__P02663 CON__P02663 174 181 yes yes 2 0.017732 86.086 By MS/MS 1.5 0.5 1 1 2 66095000 66095000 0 0 + 3498 40 3639 14258;14259 11687 11687 1 66525000 0 0 FALQLGDPSTGLLIR AEDVQRVVDTNRKQRFALQLGDPSTGLLIR FALQLGDPSTGLLIRANQGHSLQVPKLELM R F A I R A 1 1 0 1 0 1 0 2 0 1 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1599.8984 Q86TN4 Q86TN4 87 101 TRPT1 tRNA 2-phosphotransferase 1 yes yes 2 0.00028311 129.89 By matching By MS/MS 6.67 0.471 1 2 2 1 5786300 0 1505000 4281300 3499 1542 3640 14260;14261;14262 11688 11688 1 0 692460 759690 FALTFGLDQLK RSSSTFSGIKELARRFALTFGLDQLKTREA LARRFALTFGLDQLKTREAIAMLHKDGIEF R F A L K T 1 0 0 1 0 1 0 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 11 0 1251.6863 Q8N3U4 Q8N3U4 955 965 STAG2 Cohesin subunit SA-2 yes yes 2 0.00032848 131.44 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 39321000 0 5791600 33530000 3500 1603 3641 14263;14264;14265;14266 11689;11690;11691 11689 3 0 2608100 7381400 FAMEPEEFDSDTLR GEDVNAAILDESGKKFAMEPEEFDSDTLRE KFAMEPEEFDSDTLREFVTAFKKGKLKPVI K F A L R E 1 1 0 2 0 0 3 0 0 0 1 0 1 2 1 1 1 0 0 0 0 0 14 0 1685.7243 P13667 P13667 486 499 PDIA4 Protein disulfide-isomerase A4 yes yes 2 0.00012323 154.24 By MS/MS 3 0 1 1 3365300 0 0 3365300 3501 549 3642 14267 11692 11692 1 0 0 652710 FANSLPINDPLQTVYQLMSGR ASKMDSRTHARVMTRFANSLPINDPLQTVY INDPLQTVYQLMSGRMPAASTCCGDEKWGD R F A G R M 1 1 2 1 0 2 0 1 0 1 3 0 1 1 2 2 1 0 1 1 0 0 21 0 2363.1944 O15027 O15027 1665 1685 SEC16A Protein transport protein Sec16A yes yes 2;3 4.0494E-06 96.673 By MS/MS 1 0 2 2 6304000 0 0 6304000 3502 161 3643 14268;14269 11693;11694 11694 2 0 0 1358300 FANSLVGVQQQLQAFNTYR LEWIEQTIIILNNRKFANSLVGVQQQLQAF LVGVQQQLQAFNTYRTVEKPPKFTEKGNLE K F A Y R T 2 1 2 0 0 4 0 1 0 0 2 0 0 2 0 1 1 0 1 2 0 0 19 0 2183.1124 Q01082 Q01082 330 348 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.0759E-79 240.43 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 61087000 0 19327000 41760000 3503 1128 3644 14270;14271;14272;14273;14274 11695;11696;11697;11698 11697 4 0 9446900 9026800 FANYIDK TRTNEKVELQELNDRFANYIDKVRFLEQQN ELQELNDRFANYIDKVRFLEQQNKILLAEL R F A D K V 1 0 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 7 0 869.42832 P08670 P08670 114 120 VIM Vimentin yes yes 2 0.014428 112.59 By MS/MS By MS/MS 3.57 1.59 1 1 1 2 1 1 2 5 1072100000 0 316320000 755800000 3504 476 3645 14275;14276;14277;14278;14279;14280;14281 11699;11700;11701;11702 11699 4 0 99903000 128260000 FANYIDKVR TRTNEKVELQELNDRFANYIDKVRFLEQQN QELNDRFANYIDKVRFLEQQNKILLAELEQ R F A V R F 1 1 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 9 1 1124.5978 P08670 P08670 114 122 VIM Vimentin yes yes 2 0.0053963 131.06 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 133010000 0 111020000 21992000 3505 476 3646 14282;14283;14284;14285 11703;11704;11705;11706 11704 4 0 35893000 3339000 FAPFEIK KTPQAPKTLAGSCGKFAPFEIKEHMVLAPR TLAGSCGKFAPFEIKEHMVLAPRRRTAFHP K F A I K E 1 0 0 0 0 0 1 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 7 0 850.45889 Q13111 Q13111 468 474 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 0.052031 76.847 By MS/MS 2 0.816 1 1 1 3 16446000 0 0 16446000 3506 1220 3647 14286;14287;14288 11707 11707 1 0 0 3545200 FAQALGLTEAVK ITKLRKQVEEIFNLKFAQALGLTEAVKVPY NLKFAQALGLTEAVKVPYPVFESNPEFLYV K F A V K V 3 0 0 0 0 1 1 1 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1246.6921 P78347 P78347 583 594 GTF2I General transcription factor II-I yes yes 2 0.00082761 120.09 By matching By MS/MS By MS/MS 2.4 0.49 3 2 1 2 2 47512000 1148700 15675000 30689000 3507 1085 3648 14289;14290;14291;14292;14293 11708;11709;11710;11711 11709 4 1384000 6801000 6384300 FAQHGTFEYEYSQR QKNPMYQKERETPPRFAQHGTFEYEYSQRW RFAQHGTFEYEYSQRWKSLDEMEKQQREQV R F A Q R W 1 1 0 0 0 2 2 1 1 0 0 0 0 2 0 1 1 0 2 0 0 0 14 0 1761.7747 P23246 P23246 480 493 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 6.5577E-58 231.67 By MS/MS By MS/MS By MS/MS 2.9 1.55 3 8 3 2 2 2 2 4 14 647170000 13437000 158360000 475380000 3508 638 3649 14294;14295;14296;14297;14298;14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310;14311;14312;14313 11712;11713;11714;11715;11716;11717;11718;11719;11720;11721;11722;11723;11724;11725;11726;11727;11728;11729;11730;11731;11732;11733;11734;11735 11713 22 16190000 71091000 100510000 FAQLEFQLGDAER LECLPSKEHVDVIAKFAQLEFQLGDAERAK AKFAQLEFQLGDAERAKAIFENTLSTYPKR K F A E R A 2 1 0 1 0 2 2 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 13 0 1522.7416 Q14690 Q14690 1767 1779 PDCD11 Protein RRP5 homolog yes yes 2 1.8714E-11 180.19 By MS/MS By MS/MS 1 0 2 1 1 14135000 0 2050300 12085000 3509 1314 3650 14314;14315 11736;11737 11737 2 0 1002200 2603900 FAQPGSFEYEYAMR IKNQQFHKEREQPPRFAQPGSFEYEYAMRW RFAQPGSFEYEYAMRWKALIEMEKQQQDQV R F A M R W 2 1 0 0 0 1 2 1 0 0 0 0 1 2 1 1 0 0 2 0 0 0 14 0 1694.7399 Q15233 Q15233 257 270 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 7.3192E-13 185.08 By MS/MS By MS/MS By MS/MS 3.83 1.55 2 3 4 8 3 3 1 3 7 14 1509600000 45331000 276220000 1188000000 3510 1351 3651;3652 14316;14317;14318;14319;14320;14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336;14337;14338;14339 11738;11739;11740;11741;11742;11743;11744;11745;11746;11747;11748;11749;11750;11751;11752;11753;11754;11755;11756;11757;11758;11759;11760 11751 608 23 35366000 93503000 204920000 FAQPGTFEFEYASR QKTQQYHKEREQPPRFAQPGTFEFEYASRW RFAQPGTFEFEYASRWKALDEMEKQQREQV R F A S R W 2 1 0 0 0 1 2 1 0 0 0 0 0 3 1 1 1 0 1 0 0 0 14 0 1648.7522 Q8WXF1 Q8WXF1 265 278 PSPC1 Paraspeckle component 1 yes yes 2 0.0022953 100.55 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 126140000 0 16863000 109270000 3511 1695 3653 14340;14341;14342;14343;14344;14345;14346 11761;11762;11763;11764 11762 4 0 5607800 19611000 FAQSAPGSPLSSQPVLITVQR PGAAQPKLAVIQEARFAQSAPGSPLSSQPV GSPLSSQPVLITVQRQLPQAIKPVTYTVAT R F A Q R Q 2 1 0 0 0 3 0 1 0 1 2 0 0 1 3 4 1 0 0 2 0 0 21 0 2182.1746 Q01167 Q01167 421 441 FOXK2 Forkhead box protein K2 yes yes 2 1.3806E-13 122.93 By MS/MS By MS/MS 3 0 2 1 1 8196400 0 1738800 6457500 3512 1132 3654 14347;14348 11765;11766 11766 2 0 741270 1252500 FASENDLPEWK EDEEELFKMRAKLFRFASENDLPEWKERGT KLFRFASENDLPEWKERGTGDVKLLKHKEK R F A W K E 1 0 1 1 0 0 2 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 11 0 1334.6143 P43487 P43487 58 68 RANBP1 Ran-specific GTPase-activating protein yes yes 2 6.0616E-05 143.03 By MS/MS 6.5 0.5 1 1 2 22621000 0 0 22621000 3513 815 3655 14349;14350 11767;11768 11768 2 0 0 3746800 FASFIDK VKAQEREQIKTLNNKFASFIDKVRFLEQQN QIKTLNNKFASFIDKVRFLEQQNQVLQTKW K F A D K V 1 0 0 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 0 7 0 826.4225 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__Q9H552;CON__Q9DCV7;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5;CON__Q7Z794;Q7Z794;CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7;CON__Q3SY84;Q3SY84;CON__P19013;P19013 CON__P35908 195 201 KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT84;KRT76;KRT2;KRT77;KRT73;KRT74;KRT71;KRT4 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 4 no no 1;2 2.3331E-07 173.59 By MS/MS By MS/MS By MS/MS 5.38 2.79 3 4 6 6 4 4 4 3 3 5 19 11 12 7431300000 4307200000 499840000 2624300000 + 3514 65;66;49;68;37;47;58;69;71;1135;61;54;95;86;92;80 3656 14351;14352;14353;14354;14355;14356;14357;14358;14359;14360;14361;14362;14363;14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381;14382;14383;14384;14385;14386;14387;14388;14389;14390;14391;14392 11769;11770;11771;11772;11773;11774;11775;11776;11777;11778;11779;11780;11781;11782;11783;11784;11785;11786;11787;11788;11789;11790;11791;11792;11793;11794;11795;11796;11797;11798;11799;11800;11801;11802;11803;11804;11805;11806;11807;11808;11809;11810;11811;11812;11813;11814;11815 11795 47 4392400000 183720000 990410000 FASFIDKVQFLEQQNK VRTEEREQIKLLNNKFASFIDKVQFLEQQN ASFIDKVQFLEQQNKVLETKWNLLQQQTTT K F A N K V 1 0 1 1 0 3 1 0 0 1 1 2 0 3 0 1 0 0 0 1 0 0 16 1 1940.9996 CON__P19013;P19013 CON__P19013 222 237 KRT4 Keratin, type II cytoskeletal 4 yes no 3 4.3226E-06 151.72 By MS/MS 1 0 1 1 3422200 3422200 0 0 + 3515 61 3657 14393 11816 11816 1 3422200 0 0 FASFIDKVR VKAQEREQIKTLNNKFASFIDKVRFLEQQN KTLNNKFASFIDKVRFLEQQNQVLQTKWEL K F A V R F 1 1 0 1 0 0 0 0 0 1 0 1 0 2 0 1 0 0 0 1 0 0 9 1 1081.592 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__Q9DCV7;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5;CON__Q7Z794;Q7Z794;CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7;CON__Q3SY84;Q3SY84 CON__P35908 195 203 KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT84;KRT76;KRT2;KRT77;KRT73;KRT74;KRT71 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71 no no 2 0.0012894 141.52 By MS/MS By MS/MS By MS/MS 6 2.59 1 1 2 1 3 1 1 1 5 4 2 210050000 142340000 65675000 2035200 + 3516 65;66;49;68;37;47;58;69;71;1135;54;95;86;92;80 3658 14394;14395;14396;14397;14398;14399;14400;14401;14402;14403;14404 11817;11818;11819;11820;11821;11822;11823;11824;11825;11826 11821 10 158340000 37858000 361130 FASFIER IRTQEKAQLQDLNDRFASFIERVHELEQQN QLQDLNDRFASFIERVHELEQQNKVLEAEL R F A E R V 1 1 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 7 0 868.4443 P07196 P07196 101 107 NEFL Neurofilament light polypeptide yes yes 2 0.042095 81.32 By MS/MS 3 0 1 1 7889900 0 0 7889900 3517 453 3659 14405 11827 11827 1 0 0 1530300 FASNIQR SIQLIRDEFLMNVQKFASNIQRTMQQLEGE EFLMNVQKFASNIQRTMQQLEGEIKLEMPI K F A Q R T 1 1 1 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 7 0 834.4348 Q8IVF4 Q8IVF4 207 213 DNAH10 Dynein heavy chain 10, axonemal yes yes 2 0.043058 80.377 By matching By MS/MS By MS/MS 4.12 1.83 1 1 3 1 1 1 3 2 3 1524400000 518880000 411610000 593930000 3518 1570 3660 14406;14407;14408;14409;14410;14411;14412;14413 11828;11829 11829 2 409430000 129360000 97156000 FASWALESDNNTALLLSK WTMTKIQKHQEHILRFASWALESDNNTALL WALESDNNTALLLSKKLIYFQLHRALKMIV R F A S K K 3 0 2 1 0 0 1 0 0 0 4 1 0 1 0 3 1 1 0 0 0 0 18 0 1979 Q13263 Q13263 348 365 TRIM28 Transcription intermediary factor 1-beta yes yes 2 2.1344E-08 139.48 By MS/MS By MS/MS 3 1.31 1 2 1 2 1 2 5 72684000 0 11810000 60873000 3519 1235 3661 14414;14415;14416;14417;14418;14419;14420 11830;11831;11832;11833;11834 11833 5 0 4988000 11825000 FATEAAITILR AGVFEPTIVKVKSLKFATEAAITILRIDDL KSLKFATEAAITILRIDDLIKLHPESKDDK K F A L R I 3 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1204.6816 P17987 P17987 516 526 TCP1 T-complex protein 1 subunit alpha yes yes 2 0.0011108 113.22 By MS/MS 4 0 1 1 6654100 0 6654100 0 3520 591 3662 14421 11835 11835 1 0 2208300 0 FATHAAALSVR ELDDTPMRGRQLRVRFATHAAALSVRNLSP LRVRFATHAAALSVRNLSPYVSNELLEEAF R F A V R N 4 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1142.6196 P23246 P23246 366 376 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 1.2436E-09 166.34 By MS/MS By MS/MS 3 1.49 2 2 1 2 2 5 4 401490000 0 127810000 273670000 3521 638 3663 14422;14423;14424;14425;14426;14427;14428;14429;14430 11836;11837;11838;11839;11840;11841;11842;11843;11844 11840 9 0 56371000 59028000 FATHGAALTVK ELDGTILKSRPLRIRFATHGAALTVKNLSP LRIRFATHGAALTVKNLSPVVSNELLEQAF R F A V K N 3 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1114.6135 Q8WXF1 Q8WXF1 151 161 PSPC1 Paraspeckle component 1 yes yes 2 0.00055584 118.91 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 40271000 0 7247100 33024000 3522 1695 3664 14431;14432 11845;11846 11846 2 0 2405000 6405100 FATTFYQHLADSK ATNRRVWELSKANSRFATTFYQHLADSKND SRFATTFYQHLADSKNDNDNIFLSPLSIST R F A S K N 2 0 0 1 0 1 0 0 1 0 1 1 0 2 0 1 2 0 1 0 0 0 13 0 1527.7358 P01008 P01008 90 102 SERPINC1 Antithrombin-III yes yes 2 1.7211E-06 105.2 By MS/MS 9 0 1 1 0 0 0 0 3523 366 3665 14433 11847 11847 1 0 0 0 FAVALDSEQNNIHVK VTVRHQAVTRKKDNRFAVALDSEQNNIHVK FAVALDSEQNNIHVKDIVKVIDGPHSGREG R F A V K D 2 0 2 1 0 1 1 0 1 1 1 1 0 1 0 1 0 0 0 2 0 0 15 0 1683.858 O00267 O00267 583 597 SUPT5H Transcription elongation factor SPT5 yes yes 3 0.0048155 66.285 By MS/MS 2 0 1 1 5787700 0 0 5787700 3524 115 3666 14434 11848 11848 1 0 0 1307900 FAVGIVIGR NSRMGGGSIEVSVPRFAVGIVIGRNGEMIK EVSVPRFAVGIVIGRNGEMIKKIQNDAGVR R F A G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 2 0 0 9 0 930.56509 Q96AE4;Q96I24 Q96I24 263 271 FUBP1;FUBP3 Far upstream element-binding protein 1;Far upstream element-binding protein 3 no no 2 0.00048146 125.08 By MS/MS By MS/MS 3 0 2 1 1 9894900 0 2960800 6934100 3525 1797;1750 3667 14435;14436 11849;11850 11849 2 0 1262200 1344900 FAVGTAGLGAEER TWLARRGAPGDVWARFAVGTAGLGAEERRA ARFAVGTAGLGAEERRALEREQARHGDLLL R F A E R R 3 1 0 0 0 0 2 3 0 0 1 0 0 1 0 0 1 0 0 1 0 0 13 0 1276.6412 Q96L58 Q96L58 94 106 B3GALT6 Beta-1,3-galactosyltransferase 6 yes yes 2 0.0015137 110.08 By matching By MS/MS 6 0 2 1 1 8724600 0 1239200 7485400 3526 1807 3668 14437;14438 11851 11851 1 0 428960 1119900 FAVQDVNDVLDLEWDQHLEQK EAQLQEIRRLHQYVKFAVQDVNDVLDLEWD NDVLDLEWDQHLEQKKKQRHLLVPERETLF K F A Q K K 1 0 1 4 0 3 2 0 1 0 3 1 0 1 0 0 0 1 0 3 0 0 21 0 2540.2183 P35658 P35658 823 843 NUP214 Nuclear pore complex protein Nup214 yes yes 3 0.0046272 48.616 By MS/MS 1 0 1 1 6980300 0 0 6980300 3527 757 3669 14439 11852 11852 1 0 0 1504000 FAVSQMSALLDSAHLLASSTQR AQMLDVAIRVKAIRKFAVSQMSALLDSAHL ALLDSAHLLASSTQRNGICEVLYAAAWICG K F A Q R N 4 1 0 1 0 2 0 0 1 0 4 0 1 1 0 5 1 0 0 1 0 0 22 0 2332.1845 O14617 O14617 454 475 AP3D1 AP-3 complex subunit delta-1 yes yes 3 2.0111E-23 163.85 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 12586000 0 3540700 9045400 3528 139 3670 14440;14441;14442 11853;11854 11854 2 0 1594400 1790100 FCIWTESAFR KLNILKLAPGGHVGRFCIWTESAFRKLDEL GHVGRFCIWTESAFRKLDELYGTWRKAASL R F C F R K 1 1 0 0 1 0 1 0 0 1 0 0 0 2 0 1 1 1 0 0 0 0 10 0 1315.6019 P36578 P36578 249 258 RPL4 60S ribosomal protein L4 yes yes 2 1.0831E-16 182.09 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 45211000 0 4833400 40377000 3529 762 3671 14443;14444;14445;14446;14447 11855;11856;11857 11857 3 0 1372300 5895800 FCLFHSFFVTK LHLEMEEALTEQVARFCLFHSFFVTKKPTS QVARFCLFHSFFVTKKPTSQIPETKHPFSF R F C T K K 0 0 0 0 1 0 0 0 1 0 1 1 0 4 0 1 1 0 0 1 0 0 11 0 1431.7009 Q9BQG0 Q9BQG0 478 488 MYBBP1A Myb-binding protein 1A yes yes 3 0.0092998 73.632 By MS/MS 1.5 0.5 1 1 2 2852600 0 0 2852600 3530 1885 3672 14448;14449 11858 11858 1 0 0 636240 FDAGELITQR LPSITTEILKSVVARFDAGELITQRELVSR SVVARFDAGELITQRELVSRQVSDDLTERA R F D Q R E 1 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1148.5826 P35232 P35232 134 143 PHB Prohibitin yes yes 2 1.4376E-05 152.34 By MS/MS By MS/MS 6.5 0.5 2 2 1 3 32807000 0 5495500 27311000 3531 740 3673 14450;14451;14452;14453 11859;11860;11861 11860 3 0 1902400 4150600 FDAMPFTLR KMKTSRAFFSEVERRFDAMPFTLRAFEDEK SEVERRFDAMPFTLRAFEDEKKARMGVVEC R F D L R A 1 1 0 1 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 9 0 1096.5376 Q9UQ80 Q9UQ80 273 281 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.00299 101.64 By MS/MS By MS/MS 4.5 0.764 1 1 4 4 2 83333000 0 51699000 31634000 3532 2220 3674;3675 14454;14455;14456;14457;14458;14459 11862;11863;11864;11865;11866 11863 713 5 0 13599000 4412400 FDASFFGVHPK YGLPRRSGKLKDLSRFDASFFGVHPKQAHT DLSRFDASFFGVHPKQAHTMDPQLRLLLEV R F D P K Q 1 0 0 1 0 0 0 1 1 0 0 1 0 3 1 1 0 0 0 1 0 0 11 0 1250.6084 P49327 P49327 60 70 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 0.064213 40.154 By MS/MS By matching 1.5 0.5 1 1 1 1 1976200 0 958210 1018000 3533 853 3676 14460;14461 11867 11867 1 0 468360 230040 FDDAVVQSDMK PTNTVFDAKRLIGRRFDDAVVQSDMKHWPF IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R F D M K H 1 0 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 11 0 1253.5598 P11142 P11142 78 88 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 0.00032739 127.76 By MS/MS By MS/MS By MS/MS 3 0 4 1 1 2 62539000 7483900 11718000 43337000 3534 517 3677;3678 14462;14463;14464;14465 11868;11869;11870;11871 11870 216 4 8634700 4995300 8405300 FDDKPDYSYLR PSEFATYLNFCRSLRFDDKPDYSYLRQLFR RSLRFDDKPDYSYLRQLFRNLFHRQGFSYD R F D L R Q 0 1 0 3 0 0 0 0 0 0 1 1 0 1 1 1 0 0 2 0 0 0 11 1 1417.6514 P48730;P49674 P48730 260 270 CSNK1D;CSNK1E Casein kinase I isoform delta;Casein kinase I isoform epsilon yes no 3 0.011505 73.781 By MS/MS 5 0 1 1 13884000 0 0 13884000 3535 848 3679 14466 11872 11872 1 0 0 1936600 FDDPGLMLMGFK RQIILEKEETEELKRFDDPGLMLMGFKPLV LKRFDDPGLMLMGFKPLVLLKKHHYLRPSL R F D F K P 0 0 0 2 0 0 0 2 0 0 2 1 2 2 1 0 0 0 0 0 0 0 12 0 1369.641 P12956 P12956 340 351 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.01077 93.111 By matching By MS/MS By MS/MS 2.67 0.471 1 2 1 1 1 15535000 388780 551880 14595000 3536 541 3680 14467;14468;14469 11873;11874 11874 2 468440 235270 2830600 FDDPGLMLMGFKPLVLLK RQIILEKEETEELKRFDDPGLMLMGFKPLV PGLMLMGFKPLVLLKKHHYLRPSLFVYPEE R F D L K K 0 0 0 2 0 0 0 2 0 0 5 2 2 2 2 0 0 0 0 1 0 0 18 1 2033.1094 P12956 P12956 340 357 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 7.4918E-06 110.31 By MS/MS By MS/MS 2.86 0.833 1 5 1 1 6 387240000 0 2340900 384900000 3537 541 3681;3682;3683 14470;14471;14472;14473;14474;14475;14476 11875;11876;11877;11878;11879;11880;11881 11879 238;239 7 0 997930 74658000 FDEFDEAIDEAIEDDIK LERRSTRTRKCISYRFDEFDEAIDEAIEDD EFDEAIDEAIEDDIKEADGGGVGRGKDIST R F D I K E 2 0 0 5 0 0 4 0 0 3 0 1 0 2 0 0 0 0 0 0 0 0 17 0 2012.8739 Q96T23 Q96T23 1023 1039 RSF1 Remodeling and spacing factor 1 yes yes 2 1.2045E-05 110.38 By MS/MS 1 0 1 1 2354500 0 0 2354500 3538 1837 3684 14477 11882 11882 1 0 0 507310 FDEFDEAIDEAIEDDIKEADGGGVGR LERRSTRTRKCISYRFDEFDEAIDEAIEDD IEDDIKEADGGGVGRGKDISTITGHRGKDI R F D G R G 3 1 0 6 0 0 5 4 0 3 0 1 0 2 0 0 0 0 0 1 0 0 26 1 2811.2359 Q96T23 Q96T23 1023 1048 RSF1 Remodeling and spacing factor 1 yes yes 3 1.6508E-12 93.966 By MS/MS 1 0 1 1 6136600 0 0 6136600 3539 1837 3685 14478 11883 11883 1 0 0 1322200 FDEFFSEGCAPGSK NIPMGLLYNKINHCRFDEFFSEGCAPGSKK RFDEFFSEGCAPGSKKDSSLCKLCMGSGLN R F D S K K 1 0 0 1 1 0 2 2 0 0 0 1 0 3 1 2 0 0 0 0 0 0 14 0 1576.6504 P02787 P02787 495 508 TF Serotransferrin yes yes 2 0.00011172 155.15 By MS/MS 9 0 1 1 22782000 22782000 0 0 3540 399 3686 14479 11884 11884 1 12788000 0 0 FDEISFVNFAR ERGFIYVHKPPVHIRFDEISFVNFARGTTT VHIRFDEISFVNFARGTTTTRSFDFEIETK R F D A R G 1 1 1 1 0 0 1 0 0 1 0 0 0 3 0 1 0 0 0 1 0 0 11 0 1343.651 Q08945 Q08945 371 381 SSRP1 FACT complex subunit SSRP1 yes yes 2 1.2206E-13 180.44 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 3 4 179060000 0 20064000 158990000 3541 1186 3687 14480;14481;14482;14483;14484;14485;14486 11885;11886;11887;11888;11889;11890 11888 6 0 8130000 30601000 FDEVLIR YVRCIKPNDAKQPGRFDEVLIRHQVKYLGL NDAKQPGRFDEVLIRHQVKYLGLLENLRVR R F D I R H 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 7 0 890.48617 O00159 O00159 637 643 MYO1C Unconventional myosin-Ic yes yes 2 0.021396 100.07 By MS/MS 2 0 1 1 7767700 0 0 7767700 3542 106 3688 14487 11891 11891 1 0 0 1755300 FDFVHDLVLYLYR AKLTDQLPLIIVCDRFDFVHDLVLYLYRNN DRFDFVHDLVLYLYRNNLQKYIEIYVQKVN R F D Y R N 0 1 0 2 0 0 0 0 1 0 3 0 0 2 0 0 0 0 2 2 0 0 13 0 1698.877 Q00610 Q00610 781 793 CLTC Clathrin heavy chain 1 yes yes 3 0.00026223 110.31 By MS/MS 2 0 1 1 590550 0 0 590550 3543 1125 3689 14488 11892 11892 1 0 0 133450 FDGALNVDLTEFQTNLVPYPR RLISQIVSSITASLRFDGALNVDLTEFQTN VDLTEFQTNLVPYPRIHFPLATYAPVISAE R F D P R I 1 1 2 2 0 1 1 1 0 0 3 0 0 2 2 0 2 0 1 2 0 0 21 0 2408.2012 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 244 264 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3 3.7023E-141 276.45 By MS/MS By MS/MS 3.2 1.25 2 3 4 1 1 9 184270000 0 4459900 179810000 3544 1077;1515;1883;1078 3690 14489;14490;14491;14492;14493;14494;14495;14496;14497;14498 11893;11894;11895;11896;11897;11898;11899;11900 11897 8 0 1149600 30673000 FDGILGMAYPR GEATKQPGITFIAAKFDGILGMAYPRISVN IAAKFDGILGMAYPRISVNNVLPVFDNLMQ K F D P R I 1 1 0 1 0 0 0 2 0 1 1 0 1 1 1 0 0 0 1 0 0 0 11 0 1238.6118 P07339 P07339 195 205 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2 0.00032747 124.23 By MS/MS By MS/MS By MS/MS 5.36 2.19 1 1 1 1 3 2 3 1 1 8 3 3 70525000 31107000 6076200 33342000 3545 458 3691 14499;14500;14501;14502;14503;14504;14505;14506;14507;14508;14509;14510;14511;14512 11901;11902;11903;11904;11905;11906;11907;11908;11909;11910;11911 11906 11 30216000 2350600 5291400 FDGLLGFPGGFVDR FGRIPMRFSVLMQMRFDGLLGFPGGFVDRR RFDGLLGFPGGFVDRRFWSLEDGLNRVLGL R F D D R R 0 1 0 2 0 0 0 4 0 0 2 0 0 3 1 0 0 0 0 1 0 0 14 0 1495.746 Q9BRJ7 Q9BRJ7 56 69 NUDT16L1 Protein syndesmos yes yes 2 0.0076697 84.507 By MS/MS 7 0 1 1 6656300 0 0 6656300 3546 1890 3692 14513 11912 11912 1 0 0 1181100 FDHVPLATPNGDVLIR IPGAGEIIIADNIIKFDHVPLATPNGDVLI DHVPLATPNGDVLIRDLNFEVRSGANVLIC K F D I R D 1 1 1 2 0 0 0 1 1 1 2 0 0 1 2 0 1 0 0 2 0 0 16 0 1762.9366 P28288 P28288 442 457 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 3 0.0021134 70.529 By MS/MS 4 0 1 1 5079500 0 5079500 0 3547 688 3693 14514 11913 11913 1 0 1685700 0 FDITIGPK VKHSISFKENSSCGRFDITIGPKQNMGKTI ENSSCGRFDITIGPKQNMGKTIEGITVTVH R F D P K Q 0 0 0 1 0 0 0 1 0 2 0 1 0 1 1 0 1 0 0 0 0 0 8 0 889.49092 Q9Y2T2 Q9Y2T2 291 298 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.013817 89.142 By MS/MS 5 0 1 1 8499300 0 0 8499300 3548 2250 3694 14515 11914 11914 1 0 0 1185500 FDKDHDVMLFLK TVDPELAASGATLPKFDKDHDVMLFLKMYD LPKFDKDHDVMLFLKMYDPKTRSLNYCGHI K F D L K M 0 0 0 3 0 0 0 0 1 0 2 2 1 2 0 0 0 0 0 1 0 0 12 1 1506.7541 Q93009 Q93009 679 690 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 3 0.02319 63.185 By MS/MS 2 0 1 1 8275000 0 0 8275000 3549 1738 3695 14516 11915 11915 1 0 0 1870000 FDLLASNFPPLPGSSSR RPHPSTAESKAPTPKFDLLASNFPPLPGSS LLASNFPPLPGSSSRMPGELVLENRMSDVV K F D S R M 1 1 1 1 0 0 0 1 0 0 3 0 0 2 3 4 0 0 0 0 0 0 17 0 1803.9155 Q71RC2 Q71RC2 477 493 LARP4 La-related protein 4 yes yes 2 9.2979E-06 118.37 By MS/MS 2.5 0.5 1 1 2 5858200 0 5858200 0 3550 1514 3696 14517;14518 11916;11917;11918 11916 3 0 2592400 0 FDLMYAK NTTAIAEAWARLDHKFDLMYAKRAFVHWYV AWARLDHKFDLMYAKRAFVHWYVGEGMEEG K F D A K R 1 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 1 0 0 0 7 0 886.42588 A6NHL2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 395 401 TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2 0.016403 108.98 By MS/MS By MS/MS 5.38 2.62 1 1 2 3 3 1 2 2 1 6 10 1025300000 0 139700000 885630000 3551 1077;1515;1883;1078;13 3697;3698 14519;14520;14521;14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533;14534 11919;11920;11921;11922;11923;11924;11925;11926;11927;11928;11929;11930 11921 2 12 0 42054000 167110000 FDLPDMK LRNNQRKAKRSLAPRFDLPDMKETKYTVDK AKRSLAPRFDLPDMKETKYTVDKRFGMDFK R F D M K E 0 0 0 2 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 7 0 864.40514 P19525 P19525 247 253 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.024818 97.068 By MS/MS 3 0 1 1 9840000 0 0 9840000 3552 609 3699 14535 11931 11931 1 0 0 1908500 FDPMGQQTCSAHPAR YYLNEQGDRVYTLKKFDPMGQQTCSAHPAR FDPMGQQTCSAHPARFSPDDKYSRHRITIK K F D A R F 2 1 0 1 1 2 0 1 1 0 0 0 1 1 2 1 1 0 0 0 0 0 15 0 1701.7352 Q9NPE3 Q9NPE3 20 34 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 3 0.0008632 84.173 By matching By MS/MS 10 0 2 1 1 8737800 0 687520 8050200 3553 2026 3700 14536;14537 11932 11932 1 0 3478300 17607000 FDQLFDDESDPFEVLK PGHLQEGFGCVVTNRFDQLFDDESDPFEVL DQLFDDESDPFEVLKAAENKKKEAGGGGVG R F D L K A 0 0 0 4 0 1 2 0 0 0 2 1 0 3 1 1 0 0 0 1 0 0 16 0 1942.8836 Q8NC51 Q8NC51 17 32 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 4.5546E-05 136.38 By MS/MS 4.5 0.5 1 1 2 163900000 0 0 163900000 3554 1630 3701 14538;14539 11933;11934;11935 11933 3 0 0 26539000 FDQLLAEEK HQRQSACNLEKKQKKFDQLLAEEKTISAKY EKKQKKFDQLLAEEKTISAKYAEERDRAEA K F D E K T 1 0 0 1 0 1 2 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1091.5499 P35579;P35580;Q7Z406 P35579 1446 1454 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 2 0.00043749 137.13 By matching By MS/MS By MS/MS 1 0 3 1 1 1 89349000 1331900 88017000 0 3555 752;753;1531 3702 14540;14541;14542 11936;11937 11936 2 1331900 43021000 0 FDSEYER RDDSFFGETSHNYHKFDSEYERMGRGPGPL ETSHNYHKFDSEYERMGRGPGPLQERSLFE K F D E R M 0 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 7 0 944.38758 P43243 P43243 246 252 MATR3 Matrin-3 yes yes 2 0.0028445 131.04 By MS/MS By matching 2.5 0.5 1 1 1 1 25010000 0 15886000 9124000 3556 812 3703 14543;14544 11938 11938 1 0 7153600 1769600 FDSKPAPSAQPAPPPHPPSR ALLKLGTSVSERVSRFDSKPAPSAQPAPPP APSAQPAPPPHPPSRLQETRKLFERSAPAA R F D S R L 3 1 0 1 0 1 0 0 1 0 0 1 0 1 8 3 0 0 0 0 0 0 20 1 2080.049 Q96SB3 Q96SB3 124 143 PPP1R9B Neurabin-2 yes yes 4 0.030679 35.015 By MS/MS 2 0 1 1 4640100 0 4640100 0 3557 1831 3704 14545 11939 11939 1 0 2089500 0 FDSPESAEK IKMENGKSKGCGTVRFDSPESAEKACRIMN GCGTVRFDSPESAEKACRIMNGIKISGREI R F D E K A 1 0 0 1 0 0 2 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 9 0 1008.44 Q9P2K5 Q9P2K5 569 577 MYEF2 Myelin expression factor 2 yes yes 2 0.0034612 99.802 By MS/MS 3 0 1 1 5643000 0 0 5643000 3558 2125 3705 14546 11940 11940 1 0 0 1094500 FDSVGGLSNHIAALK SLADVDPMQLDSSVRFDSVGGLSNHIAALK FDSVGGLSNHIAALKEMVVFPLLYPEVFEK R F D L K E 2 0 1 1 0 0 0 2 1 1 2 1 0 1 0 2 0 0 0 1 0 0 15 0 1527.8045 Q6PL18 Q6PL18 425 439 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2;3 0.00049643 110.31 By MS/MS 1.75 0.829 2 1 1 4 40081000 0 0 40081000 3559 1498 3706 14547;14548;14549;14550 11941;11942;11943 11942 3 0 0 8725800 FDTGNLCMVTGGANLGR IQIDLETGKITDFIKFDTGNLCMVTGGANL TGNLCMVTGGANLGRIGVITNRERHPGSFD K F D G R I 1 1 2 1 1 0 0 4 0 0 2 0 1 1 0 0 2 0 0 1 0 0 17 0 1781.8189 P62701 P62701 175 191 RPS4X 40S ribosomal protein S4, X isoform yes yes 2;3 2.815E-48 225.1 By MS/MS By MS/MS 6.38 0.484 5 3 2 6 161420000 0 16842000 144580000 3560 1029 3707;3708 14551;14552;14553;14554;14555;14556;14557;14558 11944;11945;11946;11947;11948 11944 489 5 0 5830100 22662000 FDTIYQILLK STRKIKEEEKRVNSKFDTIYQILLKKKSEI RVNSKFDTIYQILLKKKSEIQTLKEEIEQS K F D L K K 0 0 0 1 0 1 0 0 0 2 2 1 0 1 0 0 1 0 1 0 0 0 10 0 1252.7067 Q14258 Q14258 274 283 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.00028974 139.88 By MS/MS By MS/MS 3.8 1.83 1 2 2 1 2 1 1 4 6 37168000 0 15541000 21627000 3561 1297 3709 14559;14560;14561;14562;14563;14564;14565;14566;14567;14568 11949;11950;11951;11952;11953;11954 11950 5 0 5763800 4188900 FDTPFLPK SLKKQKLRAESDFVKFDTPFLPKPLFFRRA AESDFVKFDTPFLPKPLFFRRAKSSTATHP K F D P K P 0 0 0 1 0 0 0 0 0 0 1 1 0 2 2 0 1 0 0 0 0 0 8 0 963.50657 Q14684 Q14684 645 652 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.033452 77.058 By matching By MS/MS 2.5 0.5 1 1 1 1 7138700 0 1487500 5651200 3562 1313 3710 14569;14570 11955 11955 1 0 669860 1096100 FDTPFLPKPLFFR SLKKQKLRAESDFVKFDTPFLPKPLFFRRA VKFDTPFLPKPLFFRRAKSSTATHPPGPAV K F D F R R 0 1 0 1 0 0 0 0 0 0 2 1 0 4 3 0 1 0 0 0 0 0 13 1 1623.8813 Q14684 Q14684 645 657 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.019128 62.694 By MS/MS 2 0 1 1 1299300 0 1299300 0 3563 1313 3711 14571 11956 11956 1 0 585110 0 FDVPGDENAEMDAR EALAKTEVSLTLTNKFDVPGDENAEMDART KFDVPGDENAEMDARTILLNTKRLIVDVIR K F D A R T 2 1 1 3 0 0 2 1 0 0 0 0 1 1 1 0 0 0 0 1 0 0 14 0 1564.6464 P46940 P46940 1369 1382 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.00051744 137.89 By MS/MS 2 0 1 1 7518000 0 0 7518000 3564 835 3712 14572 11957 11957 1 0 0 1698900 FDVQLKDLEK NLTGRLNKCGVISPRFDVQLKDLEKWQNNL VISPRFDVQLKDLEKWQNNLLPSRQFGFIV R F D E K W 0 0 0 2 0 1 1 0 0 0 2 2 0 1 0 0 0 0 0 1 0 0 10 1 1233.6605 P62244 P62244 79 88 RPS15A 40S ribosomal protein S15a yes yes 2;3 0.0063677 113.1 By MS/MS By MS/MS 8.33 0.471 2 1 1 2 24201000 0 2604000 21597000 3565 1009 3713 14573;14574;14575 11958;11959;11960 11960 3 0 1184700 5068000 FDYAFDDSAPNEMVYR QKVDLTRYLENQTFRFDYAFDDSAPNEMVY DYAFDDSAPNEMVYRFTARPLVETIFERGM R F D Y R F 2 1 1 3 0 0 1 0 0 0 0 0 1 2 1 1 0 0 2 1 0 0 16 0 1938.8094 O00139 O00139 276 291 KIF2A Kinesin-like protein KIF2A yes yes 2 3.6147E-05 148.18 By MS/MS 3 0.816 1 1 1 3 15983000 0 0 15983000 3566 104 3714 14576;14577;14578 11961 11961 1 0 0 3243000 FEAALTWILSSNK AQEYIANVTSSSSAKFEAALTWILSSNKDV AKFEAALTWILSSNKDVGIWLKGEDQSELV K F E N K D 2 0 1 0 0 0 1 0 0 1 2 1 0 1 0 2 1 1 0 0 0 0 13 0 1478.7769 Q8NC56 Q8NC56 320 332 LEMD2 LEM domain-containing protein 2 yes yes 2 0.0097447 88.441 By MS/MS 4 0 1 1 4289700 0 0 4289700 3567 1631 3715 14579 11962 11962 1 0 0 700640 FEAHPNDLYVEGLPENIPFR EALGSTEAKAVPYQKFEAHPNDLYVEGLPE NDLYVEGLPENIPFRSPSWYGIPRLEKIIQ K F E F R S 1 1 2 1 0 0 3 1 1 1 2 0 0 2 3 0 0 0 1 1 0 0 20 0 2356.1488 P78347 P78347 495 514 GTF2I General transcription factor II-I yes yes 3 4.5487E-14 127.5 By MS/MS 2 0 1 1 12848000 0 0 12848000 3568 1085 3716 14580 11963 11963 1 0 0 2903400 FEDENFILK TRHNGTGGKSIYGEKFEDENFILKHTGPGI SIYGEKFEDENFILKHTGPGILSMANAGPN K F E L K H 0 0 1 1 0 0 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 9 0 1153.5655 P62937 P62937 83 91 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 0.00037457 126.52 By MS/MS By MS/MS By MS/MS 7.12 1.05 1 1 2 4 2 1 5 130710000 12577000 3952400 114180000 3569 1053 3717 14581;14582;14583;14584;14585;14586;14587;14588 11964;11965;11966;11967;11968 11967 5 10446000 1798200 17965000 FEDVPALR LSNLAEQLQAAQNLRFEDVPALRAFPDLKE QAAQNLRFEDVPALRAFPDLKERLRRKQLV R F E L R A 1 1 0 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 945.49198 Q9NX04 Q9NX04 57 64 C1orf109 Uncharacterized protein C1orf109 yes yes 2 6.4967E-05 149.4 By matching By MS/MS 7 0 2 1 1 8168800 0 1584100 6584800 3570 2081 3718 14589;14590 11969 11969 1 0 909590 1168400 FEDVVNQSSPK PAPKSTQENNTKQLRFEDVVNQSSPKNCTV KQLRFEDVVNQSSPKNCTVYCGGIASGLTD R F E P K N 0 0 1 1 0 1 1 0 0 0 0 1 0 1 1 2 0 0 0 2 0 0 11 0 1248.5986 Q01085 Q01085 193 203 TIAL1 Nucleolysin TIAR yes yes 2 5.5228E-19 185.81 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 26880000 0 11913000 14967000 3571 1129 3719 14591;14592;14593 11970;11971 11970 2 0 3276900 2087700 FEEAPDYMYLR PAEFAMYLNYCRGLRFEEAPDYMYLRQLFR RGLRFEEAPDYMYLRQLFRILFRTLNHQYD R F E L R Q 1 1 0 1 0 0 2 0 0 0 1 0 1 1 1 0 0 0 2 0 0 0 11 0 1432.6333 P48729 P48729 268 278 CSNK1A1 Casein kinase I isoform alpha yes yes 2 0.00032766 125.56 By matching By MS/MS 5 0.816 1 1 1 1 2 22437000 2820700 0 19616000 3572 847 3720 14594;14595;14596 11972 11972 1 2200600 0 2886400 FEEEIKAEQEER SFFEAKVQAINVSSRFEEEIKAEQEERKKQ SSRFEEEIKAEQEERKKQAEEMKQRKAAFK R F E E R K 1 1 0 0 0 1 6 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1535.7104 Q96C19 Q96C19 207 218 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.00021204 151.22 By matching By MS/MS 6 0 2 1 1 7107800 0 1744700 5363100 3573 1757 3721 14597;14598 11973 11973 1 0 603960 802370 FEEFLQR EEKRTLLARLVRSTRFEEFLQRKWSSEKRF ARLVRSTRFEEFLQRKWSSEKRFGLEGCEV R F E Q R K 0 1 0 0 0 1 2 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 967.47633 Q02218 Q02218 264 270 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes yes 2 0.054338 70.912 By matching By MS/MS 2 0 2 1 1 8107300 5002200 0 3105200 3574 1144 3722 14599;14600 11974 11974 0 6027000 0 701710 FEELCSDLFR LFEGIDFYTSITRARFEELCSDLFRSTLEP ITRARFEELCSDLFRSTLEPVEKALRDAKL R F E F R S 0 1 0 1 1 0 2 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 10 0 1314.5914 P0DMV9;P0DMV8;P17066;P48741 P0DMV9 302 311 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 1.6724E-38 208.37 By MS/MS 3 0 1 1 11418000 0 0 11418000 3575 501;582 3723 14601 11975 11975 1 0 0 2214500 FEELNADLFR LYEGIDFYTSITRARFEELNADLFRGTLDP ITRARFEELNADLFRGTLDPVEKALRDAKL R F E F R G 1 1 1 1 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 10 0 1252.6088 P54652;P11142 P11142 302 311 HSPA2;HSPA8 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein no no 2 2.3937E-62 210.66 By MS/MS By MS/MS By MS/MS 3.1 1.51 2 1 4 1 1 1 2 1 7 49799000 6944600 7053200 35801000 3576 517;930 3724 14602;14603;14604;14605;14606;14607;14608;14609;14610;14611 11976;11977;11978;11979 11978 4 7904700 3006800 6563600 FEELTNLIR EEDTKRVVRSAKDKRFEELTNLIRTIRNAM SAKDKRFEELTNLIRTIRNAMKIRDVTKCL R F E I R T 0 1 1 0 0 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 9 0 1133.6081 Q99613;B5ME19 Q99613 57 65 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 9.3905E-05 107.29 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 9048000 0 1851000 7197000 3577 21 3725 14612;14613;14614 11980;11981 11981 0 0 833540 1610700 FEEPAPLSYDSRPR RQHPEESSERGYFPRFEEPAPLSYDSRPRY RFEEPAPLSYDSRPRYEQAPRASALRHEEQ R F E P R Y 1 2 0 1 0 0 2 0 0 0 1 0 0 1 3 2 0 0 1 0 0 0 14 1 1662.8002 Q07157 Q07157 1132 1145 TJP1 Tight junction protein ZO-1 yes yes 3 0.0031647 77.527 By MS/MS 1.5 0.5 1 1 2 19193000 0 0 19193000 3578 1177 3726 14615;14616 11982 11982 1 0 0 4195300 FEETTADGR STLKTTQFSCTLGEKFEETTADGRKTQTVC CTLGEKFEETTADGRKTQTVCNFTDGALVQ K F E G R K 1 1 0 1 0 0 2 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 9 0 1024.4462 Q01469 Q01469 73 81 FABP5 Fatty acid-binding protein, epidermal yes yes 2 0.00063974 128.69 By MS/MS By MS/MS 7.14 2.8 1 1 1 1 2 1 3 4 15142000 7296700 0 7845400 3579 1133 3727 14617;14618;14619;14620;14621;14622;14623 11983;11984;11985;11986;11987;11988 11984 6 6660000 0 2110500 FEGDTLVNR FFKDDGNYKTRAEVKFEGDTLVNRIELKGI TRAEVKFEGDTLVNRIELKGIDFKEDGNIL K F E N R I 0 1 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1049.5142 CON__Q9U6Y5 CON__Q9U6Y5 114 122 yes yes 2 6.7434E-11 164.53 By MS/MS By MS/MS By MS/MS 5.55 2.44 2 2 2 4 3 3 2 2 5 7 8 1763200000 204820000 389040000 1169300000 + 3580 101 3728 14624;14625;14626;14627;14628;14629;14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640;14641;14642;14643 11989;11990;11991;11992;11993;11994;11995;11996;11997;11998;11999;12000;12001;12002;12003;12004;12005;12006;12007 11995 19 230680000 133850000 188300000 FEKPLEEK IIDRRPERRPPRERRFEKPLEEKGEGGEFS RPPRERRFEKPLEEKGEGGEFSVDRPIIDR R F E E K G 0 0 0 0 0 0 3 0 0 0 1 2 0 1 1 0 0 0 0 0 0 0 8 1 1018.5335 Q8NC51 Q8NC51 138 145 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.017604 109.01 By MS/MS 4 0 1 1 3775400 0 0 3775400 3581 1630 3729 14644 12008 12008 1 0 0 616640 FELPMGTTEQPPLPQQTQPPAK GFCPEGPSCKFMHPRFELPMGTTEQPPLPQ TEQPPLPQQTQPPAKQSNNPPLQRSSSLIQ R F E A K Q 1 0 0 0 0 4 2 1 0 0 2 1 1 1 6 0 3 0 0 0 0 0 22 0 2434.2202 O95639 O95639 169 190 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes yes 3 0.006203 44.5 By MS/MS 6.5 0.5 1 1 2 6486400 0 6486400 0 3582 333 3730 14645;14646 12009 12009 1 0 3356900 0 FELQHGTEEQQEEVR KIDSDLGDAWAFFYKFELQHGTEEQQEEVR FELQHGTEEQQEEVRKRCESAEPRHGELWC K F E V R K 0 1 0 0 0 3 5 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 15 0 1857.8493 O94906 O94906 884 898 PRPF6 Pre-mRNA-processing factor 6 yes yes 2;3 1.3903E-35 214.58 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 62043000 0 4686600 57357000 3583 305 3731 14647;14648;14649;14650 12010;12011;12012 12011 3 0 2110400 12882000 FELTGIPPAPR EGERAMTKDNNLLGKFELTGIPPAPRGVPQ LLGKFELTGIPPAPRGVPQIEVTFDIDANG K F E P R G 1 1 0 0 0 0 1 1 0 1 1 0 0 1 3 0 1 0 0 0 0 0 11 0 1196.6554 P11142 P11142 459 469 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 0.0055943 99.802 By matching By MS/MS By MS/MS 2 0.894 2 1 2 1 3 1 68566000 9710800 58855000 0 3584 517 3732 14651;14652;14653;14654;14655 12013;12014;12015;12016 12014 4 9710800 25268000 0 FEMEQNLR DIDNTRMTLDDFRIKFEMEQNLRQGVDADI LDDFRIKFEMEQNLRQGVDADINGLRQVLD K F E L R Q 0 1 1 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1065.4913 P35527;CON__P35527 P35527 243 250 KRT9 Keratin, type I cytoskeletal 9 yes no 2 3.9055E-10 174.21 By MS/MS By MS/MS By MS/MS 5.33 3.01 5 6 4 4 3 4 5 3 4 5 26 6 11 1464700000 1106100000 16717000 341880000 + 3585 750 3733;3734 14656;14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670;14671;14672;14673;14674;14675;14676;14677;14678;14679;14680;14681;14682;14683;14684;14685;14686;14687;14688;14689;14690;14691;14692;14693;14694;14695;14696;14697;14698 12017;12018;12019;12020;12021;12022;12023;12024;12025;12026;12027;12028;12029;12030;12031;12032;12033;12034;12035;12036;12037;12038;12039;12040;12041;12042;12043;12044;12045;12046;12047 12029 336 28 1015600000 8048000 107750000 FENAFLSHVVSQHQALLGTIR VRGYLDKLEPSKITKFENAFLSHVVSQHQA SHVVSQHQALLGTIRADGKISEQSDAKLKE K F E I R A 2 1 1 0 0 2 1 1 2 1 3 0 0 2 0 2 1 0 0 2 0 0 21 0 2366.2495 P25705 P25705 507 527 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 3;4 2.1158E-15 156.87 By matching By MS/MS By MS/MS 3.83 0.373 1 5 1 2 3 69050000 2765300 21280000 45005000 3586 661 3735 14699;14700;14701;14702;14703;14704 12048;12049;12050;12051 12050 4 2157400 7062000 7438800 FEPQVDTEAEDMISAVK ENGLGKTDRKKEIVKFEPQVDTEAEDMISA PQVDTEAEDMISAVKSRRLLAIQAKKEREI K F E V K S 2 0 0 2 0 1 3 0 0 1 0 1 1 1 1 1 1 0 0 2 0 0 17 0 1907.8823 Q9UIG0 Q9UIG0 827 843 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 5.2036E-07 161.48 By matching By MS/MS 1.33 0.471 2 1 1 2 32022000 0 1629000 30393000 3587 2164 3736 14705;14706;14707 12052;12053 12052 2 0 796230 6679800 FEPYANPTKR NEKRKEKNIKRGGNRFEPYANPTKRYRAFI RGGNRFEPYANPTKRYRAFITNIPFDVKWQ R F E K R Y 1 1 1 0 0 0 1 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 10 1 1221.6142 P52272 P52272 61 70 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 0.0086764 80.165 By matching By MS/MS By MS/MS 3.2 0.4 4 1 1 3 1 77505000 2047200 41010000 34448000 3588 902 3737 14708;14709;14710;14711;14712 12054;12055;12056;12057 12056 4 2362000 16683000 6681200 FEQIYLSKPTHWER HASGEVEEPPRYLLKFEQIYLSKPTHWERD KFEQIYLSKPTHWERDGAPSPMMPNEARLR K F E E R D 0 1 0 0 0 1 2 0 1 1 1 1 0 1 1 1 1 1 1 0 0 0 14 1 1832.921 P30876 P30876 88 101 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 4 0.0099192 63.754 By MS/MS 2 0 1 1 6397000 0 0 6397000 3589 715 3738 14713 12058 12058 1 0 0 1445600 FEQLISR REEEDDVDLELRLARFEQLISRRPLLLNSV DLELRLARFEQLISRRPLLLNSVLLRQNPH R F E S R R 0 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 891.48142 Q9HCS7 Q9HCS7 334 340 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.011978 117.16 By matching By MS/MS By matching 2.5 1.12 1 1 1 1 1 2 1 21636000 2044400 5490800 14100000 3590 2014 3739 14714;14715;14716;14717 12059 12059 1 2044400 2450700 2303100 FESILPR ERGEEPGKSCGYSVRFESILPRPHASIMFC KSCGYSVRFESILPRPHASIMFCTVGVLLR R F E P R P 0 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 0 0 0 0 0 0 7 0 860.4756 Q08211 Q08211 475 481 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0044625 128.75 By MS/MS By MS/MS By MS/MS 1.83 0.687 2 3 1 1 3 2 92792000 6943500 35664000 50184000 3591 1182 3740 14718;14719;14720;14721;14722;14723 12060;12061;12062;12063;12064;12065;12066 12065 7 8366100 16235000 11136000 FESLEPEMNNQASR QIPEKLEDLEVIQHRFESLEPEMNNQASRV RFESLEPEMNNQASRVAVVNQIARQLMHSG R F E S R V 1 1 2 0 0 1 3 0 0 0 1 0 1 1 1 2 0 0 0 0 0 0 14 0 1650.7308 Q01082 Q01082 891 904 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 7.6068E-59 237.84 By MS/MS By MS/MS 1 0 3 2 1 60259000 0 25104000 35155000 3592 1128 3741;3742 14724;14725;14726 12067;12068;12069 12068 539 3 0 12271000 7574700 FESPEVAER IKMENGKSKGCGVVKFESPEVAERACRMMN GCGVVKFESPEVAERACRMMNGMKLSGREI K F E E R A 1 1 0 0 0 0 3 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1062.4982 P52272 P52272 699 707 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00056394 126.62 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 4 136610000 0 24660000 111950000 3593 902 3743 14727;14728;14729;14730;14731 12070;12071;12072;12073;12074 12073 5 0 10512000 21789000 FETEQALR QIDNARLAADDFRTKFETEQALRLSVEADI ADDFRTKFETEQALRLSVEADINGLRRVLD K F E L R L 1 1 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 8 0 992.49271 Q04695;CON__Q04695;CON__P08727;P08727 Q04695 173 180 KRT17;KRT19 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 0.00021756 138.37 By MS/MS By MS/MS 5 0 2 1 1 40729000 5124000 0 35605000 + 3594 73;51 3744 14732;14733 12075;12076 12076 2 4105000 0 4966200 FETFQTITSYIK AFDQRHLDDINFDVRFETFQTITSYIKEMQ DVRFETFQTITSYIKEMQIVDVNYLIPVMH R F E I K E 0 0 0 0 0 1 1 0 0 2 0 1 0 2 0 1 3 0 1 0 0 0 12 0 1476.75 O75691 O75691 1450 1461 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0015419 112.11 By MS/MS 1 0 1 1 1961900 0 1961900 0 3595 280 3745 14734 12077 12077 1 0 958960 0 FEVAQVESLR ILRFIRREKEIAETRFEVAQVESLRYRQRV IAETRFEVAQVESLRYRQRVELLERELQEL R F E L R Y 1 1 0 0 0 1 2 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 10 0 1176.6139 P12270 P12270 1214 1223 TPR Nucleoprotein TPR yes yes 2 0.035099 76.17 By MS/MS 1 0 1 1 0 0 0 0 3596 536 3746 14735 12078 12078 1 0 0 0 FEVNPVWK LYGDADYLEERHRHRFEVNPVWKKCLEEQG EERHRHRFEVNPVWKKCLEEQGLKFVGQDV R F E W K K 0 0 1 0 0 0 1 0 0 0 0 1 0 1 1 0 0 1 0 2 0 0 8 0 1017.5284 P17812 P17812 482 489 CTPS1 CTP synthase 1 yes yes 2 0.020092 84.244 By MS/MS 3 0 1 1 2315900 0 2315900 0 3597 587 3747 14736 12079 12079 1 0 987260 0 FEVQVTVPK RTEHPFTVEEFVLPKFEVQVTVPKIITILE EFVLPKFEVQVTVPKIITILEEEMNVSVCG K F E P K I 0 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 1 0 0 3 0 0 9 0 1045.5808 P01023 P01023 229 237 A2M Alpha-2-macroglobulin yes yes 2 0.0020997 105.4 By MS/MS 9.5 0.5 1 1 2 10758000 10758000 0 0 3598 370 3748 14737;14738 12080 12080 1 8623500 0 0 FEVSPSYVK ELLSESRKTSNVCIRFEVSPSYVKGGPLRD SNVCIRFEVSPSYVKGGPLRDYQIRGLNWL R F E V K G 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 2 0 0 9 0 1054.5335 P28370 P28370 171 179 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.056614 69.598 By matching By MS/MS By MS/MS 2 0 3 1 1 1 24809000 1171400 6031900 17605000 3599 693 3749 14739;14740;14741 12081;12082 12082 2 1411500 2716200 3978500 FFALPYVDHFLR WVIPWHLNKRYNRKRFFALPYVDHFLRLER RKRFFALPYVDHFLRLEREKRARIKARKEN R F F L R L 1 1 0 1 0 0 0 0 1 0 2 0 0 3 1 0 0 0 1 1 0 0 12 0 1523.7925 Q9HD33 Q9HD33 199 210 MRPL47 39S ribosomal protein L47, mitochondrial yes yes 2;3 0.013418 82.749 By MS/MS 7 0 2 2 8696600 0 0 8696600 3600 2015 3750 14742;14743 12083;12084;12085 12083 3 0 0 1543200 FFAPALISVSLPVR MGMQPHLQALLSLYKFFAPALISVSLPVRK KFFAPALISVSLPVRKKIYFKNSENLWKTA K F F V R K 2 1 0 0 0 0 0 0 0 1 2 0 0 2 2 2 0 0 0 2 0 0 14 0 1515.8813 Q92674 Q92674 244 257 CENPI Centromere protein I yes yes 2 0.0014631 106.62 By MS/MS 3 0 1 1 5788500 0 0 5788500 3601 1715 3751 14744 12086 12086 1 0 0 1122700 FFDANYDGKDYDPVAAR GKFQDNFEFVQWFKKFFDANYDGKDYDPVA DANYDGKDYDPVAARQGQETAVAPSLVAPA K F F A R Q 3 1 1 4 0 0 0 1 0 0 0 1 0 2 1 0 0 0 2 1 0 0 17 1 1962.8748 Q15691 Q15691 114 130 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 3 0.002635 66.826 By MS/MS 6 0 1 1 9033700 0 0 9033700 3602 1379 3752 14745 12087 12087 1 0 0 1351500 FFDDPMLLELAK TRRRKGLSEDVSISKFFDDPMLLELAKQDV ISKFFDDPMLLELAKQDVVLNYPM______ K F F A K Q 1 0 0 2 0 0 1 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 12 0 1437.7214 Q15029 Q15029 952 963 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0012456 115.42 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 21592000 0 3411200 18181000 3603 1335 3753 14746;14747;14748;14749;14750 12088;12089 12089 2 0 1536100 3532500 FFDTNTSVLMK VIGCLDLILKWLTLRFFDTNTSVLMKALEY LTLRFFDTNTSVLMKALEYLKLLFTLLSEE R F F M K A 0 0 1 1 0 0 0 0 0 0 1 1 1 2 0 1 2 0 0 1 0 0 11 0 1301.6326 Q14008 Q14008 1253 1263 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0012192 112.11 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 60292000 0 7289800 53002000 3604 1279 3754 14751;14752;14753;14754 12090;12091 12091 2 0 3282700 11517000 FFEDYGLFMR FFIDQSKKDAEKYAKFFEDYGLFMREGIVT EKYAKFFEDYGLFMREGIVTATEQEVKEDI K F F M R E 0 1 0 1 0 0 1 1 0 0 1 0 1 3 0 0 0 0 1 0 0 0 10 0 1323.5958 Q12931 Q12931 440 449 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 0.0029595 103.83 By MS/MS 3 0 1 1 2388400 0 0 2388400 3605 1212 3755 14755 12092 12092 1 0 0 463240 FFEHFIEGGR YLRLLTSGYLQRESKFFEHFIEGGRTVKEF QRESKFFEHFIEGGRTVKEFCQQEVEPMCK K F F G R T 0 1 0 0 0 0 2 2 1 1 0 0 0 3 0 0 0 0 0 0 0 0 10 0 1237.588 Q96FW1 Q96FW1 189 198 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 3 0.053103 45.908 By MS/MS 6.5 0.5 1 1 2 3544500 0 0 3544500 3606 1784 3756 14756;14757 12093 12093 1 0 0 547180 FFESFGDLSSADAILGNPK EALGRLLVVYPWTQRFFESFGDLSSADAIL FGDLSSADAILGNPKVKAHGKKVLDSFCEG R F F P K V 2 0 1 2 0 0 1 2 0 1 2 1 0 3 1 3 0 0 0 0 0 0 19 0 2013.9684 CON__Q3SX09 CON__Q3SX09 96 114 yes yes 2;3 4.6292E-35 169.62 By MS/MS By MS/MS By MS/MS 7.57 2.35 1 1 1 1 1 1 6 2 5 2 7 300690000 35312000 2602600 262780000 + 3607 82 3757 14758;14759;14760;14761;14762;14763;14764;14765;14766;14767;14768;14769;14770;14771 12094;12095;12096;12097;12098;12099;12100;12101;12102;12103;12104;12105;12106 12101 13 20898000 10842000 82438000 FFESFGDLSTPDAVMGNPK EALGRLLVVYPWTQRFFESFGDLSTPDAVM FGDLSTPDAVMGNPKVKAHGKKVLGAFSDG R F F P K V 1 0 1 2 0 0 1 2 0 0 1 1 1 3 2 2 1 0 0 1 0 0 19 0 2057.9404 P68871 P68871 42 60 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 2;3 9.8794E-32 205.72 By MS/MS 6.77 2.97 1 1 1 1 1 3 3 2 13 64653000 64653000 0 0 3608 1081 3758;3759 14772;14773;14774;14775;14776;14777;14778;14779;14780;14781;14782;14783;14784 12107;12108;12109;12110;12111;12112;12113 12111 522 7 46363000 0 0 FFFDPSAR TQTSQVLTAVDKDNKFFFDPSARDQVTYQQ AVDKDNKFFFDPSARDQVTYQQLRERCVCD K F F A R D 1 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 8 0 985.46577 P58107 P58107 1402 1409 EPPK1 Epiplakin yes yes 2 0.0015256 114.6 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 10710000 0 6068300 4641600 3609 958 3760 14785;14786;14787 12114;12115 12114 2 0 2933700 1000100 FFFDVGSNK AELPEGTSLTVDNKRFFFDVGSNKYGVFMR TVDNKRFFFDVGSNKYGVFMRVSEVKPTYR R F F N K Y 0 0 1 1 0 0 0 1 0 0 0 1 0 3 0 1 0 0 0 1 0 0 9 0 1059.5025 Q00577 Q00577 231 239 PURA Transcriptional activator protein Pur-alpha yes yes 2 0.00060258 116.25 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 40835000 0 12498000 28337000 3610 1124 3761 14788;14789;14790;14791;14792 12116;12117;12118 12116 3 0 3481100 4069900 FFGGYVPEMVLTPDDQR NLGNFINRAGMFVSKFFGGYVPEMVLTPDD GGYVPEMVLTPDDQRLLAHVTLELQHYHQL K F F Q R L 0 1 0 2 0 1 1 2 0 0 1 0 1 2 2 0 1 0 1 2 0 0 17 0 1969.9244 P56192 P56192 664 680 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 1.0732E-05 111.94 By MS/MS 2 0 1 1 5720200 0 0 5720200 3611 949 3762 14793 12119 12119 1 0 0 1292600 FFGLLAGR NMILDCCAQQRTYEKFFGLLAGRFCMLKKE QQRTYEKFFGLLAGRFCMLKKEYMESFEGI K F F G R F 1 1 0 0 0 0 0 2 0 0 2 0 0 2 0 0 0 0 0 0 0 0 8 0 879.49667 Q9HCG8 Q9HCG8 506 513 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 2 0.00015507 143.18 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 9557200 0 1260700 8296500 3612 2012 3763 14794;14795;14796 12120;12121;12122 12121 3 0 567700 1808300 FFGTEDHAWIK KDLKKPRGKKCFFVKFFGTEDHAWIKVEQL FFVKFFGTEDHAWIKVEQLKPYHAHKEEMI K F F I K V 1 0 0 1 0 0 1 1 1 1 0 1 0 2 0 0 1 1 0 0 0 0 11 0 1349.6404 Q49A26 Q49A26 46 56 GLYR1 Putative oxidoreductase GLYR1 yes yes 3 0.013926 67.726 By MS/MS 3.5 0.5 1 1 2 14597000 0 0 14597000 3613 1417 3764 14797;14798 12123;12124 12124 2 0 0 2659400 FFLLENVR LVVSFLSYCDYYRPRFFLLENVRNFVSFKR CDYYRPRFFLLENVRNFVSFKRSMVLKLTL R F F V R N 0 1 1 0 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 8 0 1036.5706 P26358 P26358 1262 1269 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 6.4967E-05 149.4 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 31845000 0 8647900 23197000 3614 667 3765 14799;14800;14801;14802;14803;14804;14805 12125;12126;12127;12128;12129;12130 12127 6 0 3954300 4902000 FFLSSGLIDK VESFMATAPFVQIGRFFLSSGLIDKVDNFK VQIGRFFLSSGLIDKVDNFKSLSLSKLEDP R F F D K V 0 0 0 1 0 0 0 1 0 1 2 1 0 2 0 2 0 0 0 0 0 0 10 0 1125.607 Q9BTV4 Q9BTV4 190 199 TMEM43 Transmembrane protein 43 yes yes 2 0.017878 84.213 By MS/MS 5.5 0.5 1 1 2 11454000 0 0 11454000 3615 1902 3766 14806;14807 12131 12131 1 0 0 1621000 FFLSSGLIDKVDNFK VESFMATAPFVQIGRFFLSSGLIDKVDNFK FFLSSGLIDKVDNFKSLSLSKLEDPHVDII R F F F K S 0 0 1 2 0 0 0 1 0 1 2 2 0 3 0 2 0 0 0 1 0 0 15 1 1728.9087 Q9BTV4 Q9BTV4 190 204 TMEM43 Transmembrane protein 43 yes yes 3 0.0015809 79.652 By MS/MS 5 0 1 1 9443100 0 0 9443100 3616 1902 3767 14808 12132 12132 1 0 0 1317100 FFMGNQVLK FSVLGFCKSSQVQRRFFMGNQVLKVFAARD SQVQRRFFMGNQVLKVFAARDDEAAAVALS R F F L K V 0 0 1 0 0 1 0 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 9 0 1082.5583 P13010 P13010 355 363 XRCC5 X-ray repair cross-complementing protein 5 yes yes 1;2 0.0008156 111.73 By MS/MS By MS/MS 3.7 2.05 1 1 4 2 1 1 6 4 267850000 0 110410000 157430000 3617 542 3768;3769 14809;14810;14811;14812;14813;14814;14815;14816;14817;14818 12133;12134;12135;12136;12137;12138;12139 12134 7 0 53989000 29939000 FFNYVPSGIR ______________________________ VHRVRFFNYVPSGIRCVAYNNQSNRLAVSR R F F I R C 0 1 1 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 1 1 0 0 10 0 1198.6135 Q969X6 Q969X6 11 20 CIRH1A Cirhin yes yes 2 0.00099901 110.87 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 49983000 0 17406000 32577000 3618 1746 3770 14819;14820;14821;14822 12140;12141 12140 2 0 7420300 6490400 FFQGMPEKPTTTVR ETLQLESAAEVGFVRFFQGMPEKPTTTVRL RFFQGMPEKPTTTVRLFDRGDFYTAHGEDA R F F V R L 0 1 0 0 0 1 1 1 0 0 0 1 1 2 2 0 3 0 0 1 0 0 14 1 1637.8236 P43246 P43246 22 35 MSH2 DNA mismatch repair protein Msh2 yes yes 2 0.052462 85.813 By MS/MS 2 0 1 1 16144000 0 0 16144000 3619 813 3771 14823 12142 12142 1 0 0 3648300 FFQPTEMAAQDFFQR APQALTLKLPVTINKFFQPTEMAAQDFFQR FFQPTEMAAQDFFQRWKQLSLPQQEAQKIF K F F Q R W 2 1 0 1 0 3 1 0 0 0 0 0 1 4 1 0 1 0 0 0 0 0 15 0 1861.8458 O95782 O95782 864 878 AP2A1 AP-2 complex subunit alpha-1 yes yes 2;3 1.6801E-05 162.26 By MS/MS By MS/MS 2 0 4 3 1 19621000 0 7646300 11975000 3620 339 3772;3773 14824;14825;14826;14827 12143;12144;12145;12146 12146 118 4 0 3443200 2706000 FFQPTEMASQDFFQR TFQNVSVQLPITLNKFFQPTEMASQDFFQR FFQPTEMASQDFFQRWKQLSNPQQEVQNIF K F F Q R W 1 1 0 1 0 3 1 0 0 0 0 0 1 4 1 1 1 0 0 0 0 0 15 0 1877.8407 O94973 O94973 826 840 AP2A2 AP-2 complex subunit alpha-2 yes yes 2 0.005187 83.182 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 11057000 0 3512500 7544500 3621 306 3774 14828;14829;14830 12147;12148 12147 2 0 1581700 1638200 FFSGYGR IGRLSYNVREKDIQRFFSGYGRLLEVDLKN VREKDIQRFFSGYGRLLEVDLKNGYGFVEF R F F G R L 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 1 0 0 1 0 0 0 7 0 832.38679 Q13247 Q13247 21 27 SRSF6 Serine/arginine-rich splicing factor 6 yes yes 2 0.0027075 137.5 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 34935000 0 26323000 8611800 3622 1234 3775 14831;14832;14833 12149;12150;12151 12151 3 0 7542400 1201200 FFTTPSK GKKDARQTPKKPEAKFFTTPSKSVRKASHT TPKKPEAKFFTTPSKSVRKASHTPKKWPKK K F F S K S 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 1 2 0 0 0 0 0 7 0 826.4225 O76021 O76021 462 468 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.024818 97.068 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 48072000 0 21933000 26139000 3623 295 3776 14834;14835;14836 12152;12153 12153 2 0 8214600 5069700 FFVAPFPEVFGK HQGLPQEVLNENLLRFFVAPFPEVFGKEKV LLRFFVAPFPEVFGKEKVNELSKDIGSEST R F F G K E 1 0 0 0 0 0 1 1 0 0 0 1 0 4 2 0 0 0 0 2 0 0 12 0 1383.7227 CON__P02662 CON__P02662 23 34 yes yes 2 0.0026441 108.43 By MS/MS By MS/MS By MS/MS 5.4 2.85 2 1 1 2 1 3 2 1 2 6 2 7 178210000 127560000 3874600 46780000 + 3624 39 3777 14837;14838;14839;14840;14841;14842;14843;14844;14845;14846;14847;14848;14849;14850;14851 12154;12155;12156;12157;12158;12159;12160;12161;12162;12163;12164;12165;12166 12165 12 129140000 1453400 8520400 FFVMTSLR LTATVLKQGSNQAIRFFVMTSLRNWYRGDN GSNQAIRFFVMTSLRNWYRGDNPNKPMNPL R F F L R N 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 8 0 999.52117 P53007 P53007 199 206 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 0.00016293 142.64 By MS/MS 6 0 1 1 18940000 0 0 18940000 3625 918 3778 14852 12167 12167 1 0 0 2833600 FGAEDLFK NSNPFNKEELTAILKFGAEDLFKELEGEES ELTAILKFGAEDLFKELEGEESEPQEMDID K F G F K E 1 0 0 1 0 0 1 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 8 0 925.45453 O14647 O14647 974 981 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 2 0.018852 85.212 By MS/MS 1 0 1 1 3635700 0 0 3635700 3626 142 3779 14853 12168 12168 1 0 0 783360 FGAEELFKEPEGEEQEPQEMDIDEILK SSTPFNKEELSAILKFGAEELFKEPEGEEQ EEQEPQEMDIDEILKRAETHENEPGPLTVG K F G L K R 1 0 0 2 0 2 9 2 0 2 2 2 1 2 2 0 0 0 0 0 0 0 27 1 3178.454 O14646 O14646 971 997 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 6.6031E-05 53.361 By MS/MS 1.5 0.5 1 1 2 9245800 0 0 9245800 3627 141 3780 14854;14855 12169 12169 1 0 0 2023100 FGALLSDQGFDLMNK KMTFSEHPYNNLRKRFGALLSDQGFDLMNK FGALLSDQGFDLMNKFLTYFPGRRISAEDG R F G N K F 1 0 1 2 0 1 0 2 0 0 3 1 1 2 0 1 0 0 0 0 0 0 15 0 1654.8025 P21127;Q9UQ88 P21127 688 702 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 0.00015231 152.07 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 30200000 0 2890200 27310000 3628 620 3781 14856;14857;14858 12170;12171;12172 12171 3 0 1301500 6171600 FGAPPHAGGGIGLER GIDLEKIKAYIDSFRFGAPPHAGGGIGLER FGAPPHAGGGIGLERVTMLFLGLHNVRQTS R F G E R V 2 1 0 0 0 0 1 5 1 1 1 0 0 1 2 0 0 0 0 0 0 0 15 0 1434.7368 P14868 P14868 461 475 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 3 0.0047843 66.331 By MS/MS By MS/MS 4 0 2 1 1 27268000 0 9150700 18117000 3629 566 3782 14859;14860 12173;12174 12174 2 0 3036800 2959200 FGAQQDTIEVPEKDLVDK LKQLVAEQVTYQRNRFGAQQDTIEVPEKDL QQDTIEVPEKDLVDKARQINIHNLSAFYDS R F G D K A 1 0 0 3 0 2 2 1 0 1 1 2 0 1 1 0 1 0 0 2 0 0 18 1 2031.0161 P49736 P49736 851 868 MCM2 DNA replication licensing factor MCM2 yes yes 3 0.00032265 82.709 By MS/MS 2 0 1 1 3276500 0 3276500 0 3630 864 3783 14861 12175 12175 1 0 1475500 0 FGAVWTGDNTAEWDHLK RPFVLARAFFAGSQRFGAVWTGDNTAEWDH AVWTGDNTAEWDHLKISIPMCLSLGLVGLS R F G L K I 2 0 1 2 0 0 1 2 1 0 1 1 0 1 0 0 2 2 0 1 0 0 17 0 1945.8959 Q14697 Q14697 611 627 GANAB Neutral alpha-glucosidase AB yes yes 2 0.0018518 88.021 By matching By MS/MS 2 0 2 1 1 8870000 2787500 0 6082500 3631 1317 3784 14862;14863 12176 12176 1 3358600 0 1374500 FGDLILK SELQLPFQACLKVEKFGDLILKATEPQMVL QACLKVEKFGDLILKATEPQMVLFNLYDDW K F G L K A 0 0 0 1 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 7 0 804.47454 Q6P2Q9 Q6P2Q9 1902 1908 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.026313 95.793 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 1 3 40815000 1731600 17899000 21184000 3632 1490 3785 14864;14865;14866;14867;14868 12177;12178 12178 2 1731600 8748800 4565900 FGDPVVQSDMK PQNTVFDAKRLIGRKFGDPVVQSDMKHWPF IGRKFGDPVVQSDMKHWPFQVINDGDKPKV K F G M K H 0 0 0 2 0 1 0 1 0 0 0 1 1 1 1 1 0 0 0 2 0 0 11 0 1221.57 P0DMV9;P0DMV8 P0DMV9 78 88 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.00023846 135.55 By MS/MS By MS/MS 3 0 2 1 1 40002000 0 40002000 0 3633 501 3786 14869;14870 12179;12180 12180 2 0 17053000 0 FGDSNTVMR LYDAKRRQDSLESMKFGDSNTVMRFLNEQK SLESMKFGDSNTVMRFLNEQKNLHSEISGK K F G M R F 0 1 1 1 0 0 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 0 9 0 1025.46 P15924 P15924 917 925 DSP Desmoplakin yes yes 2 8.5701E-09 163.77 By MS/MS By MS/MS By MS/MS 5 3.13 3 1 1 1 1 1 1 1 1 9 1 1 116410000 91836000 7987700 16585000 3634 572 3787 14871;14872;14873;14874;14875;14876;14877;14878;14879;14880;14881 12181;12182;12183;12184;12185;12186;12187;12188;12189 12186 9 97766000 3904300 3573600 FGEVISYQQLAALAGNPK SFTRQVLWKLLKVVKFGEVISYQQLAALAG VISYQQLAALAGNPKAARAVGGAMRGNPVP K F G P K A 3 0 1 0 0 2 1 2 0 1 2 1 0 1 1 1 0 0 1 1 0 0 18 0 1904.9996 P16455 P16455 108 125 MGMT Methylated-DNA--protein-cysteine methyltransferase yes yes 2 1.3617E-08 131.37 By MS/MS By MS/MS 7 0 2 1 1 22238000 0 733540 21505000 3635 579 3788 14882;14883 12190;12191 12191 2 0 421200 3815900 FGEVVDCTLK SWDTTKKDLKDYFSKFGEVVDCTLKLDPIT DYFSKFGEVVDCTLKLDPITGRSRGFGFVL K F G L K L 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 1 0 0 2 0 0 10 0 1166.5642 Q14103 Q14103 120 129 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 0.00039478 125.82 By MS/MS By MS/MS 5.5 0.5 3 3 3 3 123810000 0 28942000 94870000 3636 1281 3789 14884;14885;14886;14887;14888;14889 12192;12193;12194;12195 12195 4 0 8764000 13680000 FGFGFGGTGK GWSTMQASLDLGTDKFGFGFGGTGKKSHNK LGTDKFGFGFGGTGKKSHNKQFDNYGEEFT K F G G K K 0 0 0 0 0 0 0 5 0 0 0 1 0 3 0 0 1 0 0 0 0 0 10 0 973.46577 Q92499 Q92499 163 172 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 0.00032011 124.23 By MS/MS By MS/MS 4.25 2.77 1 2 1 3 1 29883000 0 12119000 17765000 3637 1705 3790 14890;14891;14892;14893 12196;12197;12198;12199 12199 4 0 6065900 3445500 FGFPEGSVELYAEK KGRRIRELTAVVQKRFGFPEGSVELYAEKV RFGFPEGSVELYAEKVATRGLCAIAQAESL R F G E K V 1 0 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 14 0 1571.7508 P23396 P23396 77 90 RPS3 40S ribosomal protein S3 yes yes 2 0.00077943 113.69 By matching By MS/MS 7.2 1.17 2 1 1 1 1 4 157390000 0 25816000 131570000 3638 641 3791 14894;14895;14896;14897;14898 12200;12201;12202 12200 3 0 8936700 20802000 FGFYEVFK WAPTFLGYSMQGLCKFGFYEVFKVLYSNML SMQGLCKFGFYEVFKVLYSNMLGEENTYLW K F G F K V 0 0 0 0 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 1 0 0 8 0 1035.5066 Q00325 Q00325 138 145 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 2 0.016148 87.323 By matching By MS/MS 6 0 2 1 1 13185000 0 712570 12472000 3639 1121 3792 14899;14900 12203 12203 1 0 246670 1866000 FGGEHVPNSPFQVTALAGDQPSVQPPLR FYTAPQPGKYVICVRFGGEHVPNSPFQVTA TALAGDQPSVQPPLRSQQLAPQYTYAQGGQ R F G L R S 2 1 1 1 0 3 1 3 1 0 2 0 0 2 5 2 1 0 0 3 0 0 28 0 2944.4832 P21333 P21333 1726 1753 FLNA Filamin-A yes yes 3;4 3.444E-41 163.46 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 42972000 0 28198000 14773000 3640 623 3793 14901;14902;14903;14904 12204;12205;12206;12207;12208 12205 4 0 13598000 3183100 FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK FSGGGFGGGGFGGGRFGGFGGPGGVGGLGG EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ R F G V K V 0 0 2 0 0 2 1 17 1 1 4 1 0 3 5 2 0 0 1 4 0 0 44 0 4091.0653 CON__P35908;CON__P35908v2;P35908 CON__P35908 129 172 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4;5 3.8663E-50 107.54 By MS/MS By MS/MS By MS/MS 4.12 2.59 5 5 6 5 5 2 1 2 2 9 7 17 1329100000 34622000 59155000 1235300000 + 3641 65;66 3794 14905;14906;14907;14908;14909;14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920;14921;14922;14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937 12209;12210;12211;12212;12213;12214;12215;12216;12217;12218;12219;12220;12221;12222;12223;12224;12225;12226;12227;12228;12229;12230;12231;12232;12233;12234;12235;12236;12237;12238;12239;12240;12241;12242;12243;12244;12245;12246;12247;12248 12215 40 28006000 24708000 228360000 FGGLVLSPVGK LARLGLVRCLRLGHRFGGLVLSPVGKQYAS LGHRFGGLVLSPVGKQYASPADRQLVAQSG R F G G K Q 0 0 0 0 0 0 0 3 0 0 2 1 0 1 1 1 0 0 0 2 0 0 11 0 1072.6281 Q9UJK0 Q9UJK0 93 103 TSR3 Ribosome biogenesis protein TSR3 homolog yes yes 2 0.00086737 115.71 By MS/MS By matching 6 0 2 1 1 9752400 0 4898100 4854300 3642 2169 3795 14938;14939 12249 12249 1 0 1695500 726260 FGGNPGGFGNQGGFGNSR EPKHNSNRQLERSGRFGGNPGGFGNQGGFG NPGGFGNQGGFGNSRGGGAGLGNNQGSNMG R F G S R G 0 1 3 0 0 1 0 8 0 0 0 0 0 3 1 1 0 0 0 0 0 0 18 0 1725.7608 Q13148 Q13148 276 293 TARDBP TAR DNA-binding protein 43 yes yes 2 8.0663E-157 289.75 By MS/MS By MS/MS By MS/MS 4.31 1.98 2 1 1 2 3 2 2 2 4 7 171580000 16716000 61391000 93472000 3643 1224 3796 14940;14941;14942;14943;14944;14945;14946;14947;14948;14949;14950;14951;14952 12250;12251;12252;12253;12254;12255;12256;12257 12256 7 15068000 18693000 15724000 FGGPVHHQAQR NVALLSQLYHSPARRFGGPVHHQAQRFRFS PARRFGGPVHHQAQRFRFSPMGVDHMSGLS R F G Q R F 1 1 0 0 0 2 0 2 2 0 0 0 0 1 1 0 0 0 0 1 0 0 11 0 1232.6163 Q15717 Q15717 207 217 ELAVL1 ELAV-like protein 1 yes yes 3 0.0040624 83 By MS/MS 6 0 1 1 2088200 0 2088200 0 3644 1380 3797 14953 12258 12258 1 0 722880 0 FGHEFLEFEFRPDGK ASDFYLRYYVGHKGKFGHEFLEFEFRPDGK FGHEFLEFEFRPDGKLRYANNSNYKNDVMI K F G G K L 0 1 0 1 0 0 3 2 1 0 1 1 0 4 1 0 0 0 0 0 0 0 15 1 1853.8737 P61326;Q96A72 Q96A72 19 33 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3;4 9.8982E-05 113.8 By MS/MS 8 0 2 2 50648000 0 0 50648000 3645 992;1748 3798 14954;14955 12259;12260 12260 2 0 0 7764900 FGIGDGNLQYYLYNWK ALDLMENKTFLEKLKFGIGDGNLQYYLYNW GIGDGNLQYYLYNWKCPSMGAEKVGLVLQ_ K F G W K C 0 0 2 1 0 1 0 3 0 1 2 1 0 1 0 0 0 1 3 0 0 0 16 0 1949.9312 P30419 P30419 467 482 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 8.1035E-14 184.9 By MS/MS 3.5 0.5 1 1 2 26843000 0 0 26843000 3646 714 3799 14956;14957 12261;12262 12262 2 0 0 4651200 FGIQAQMVTTDFQK AMKGKNCVAIAADRRFGIQAQMVTTDFQKI RFGIQAQMVTTDFQKIFPMGDRLYIGLAGL R F G Q K I 1 0 0 1 0 3 0 1 0 1 0 1 1 2 0 0 2 0 0 1 0 0 14 0 1612.7919 P49720 P49720 28 41 PSMB3 Proteasome subunit beta type-3 yes yes 2 0.017733 75.566 By matching By MS/MS 7 0 2 1 1 5184100 0 936840 4247200 3647 862 3800 14958;14959 12263 12263 1 0 537940 753640 FGISSVPTK VPVSLESKKAARAARFGISSVPTKGLSSDN AARAARFGISSVPTKGLSSDNKPMVNLDKL R F G T K G 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 2 1 0 0 1 0 0 9 0 934.51238 P82979 P82979 127 135 SARNP SAP domain-containing ribonucleoprotein yes yes 2 0.031575 76.827 By MS/MS By matching 6 0 2 1 1 89613000 0 10948000 78665000 3648 1105 3801 14960;14961 12264 12264 1 0 3789900 11769000 FGIVTSSAGTGTTEDTEAK RKSEDDEKLKKRKERFGIVTSSAGTGTTED TSSAGTGTTEDTEAKKRKRAERFGIA____ R F G A K K 2 0 0 1 0 0 2 3 0 1 0 1 0 1 0 2 5 0 0 1 0 0 19 0 1870.8796 P82979 P82979 181 199 SARNP SAP domain-containing ribonucleoprotein yes yes 2 2.8162E-52 225.23 By MS/MS By MS/MS 6 0 2 1 1 82962000 0 6942400 76019000 3649 1105 3802 14962;14963 12265;12266;12267 12266 3 0 2403200 11373000 FGLPLER FTDAEIRRFIKAYKKFGLPLERLECIARDA RFIKAYKKFGLPLERLECIARDAELVDKSV K F G E R L 0 1 0 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 7 0 830.46504 O14647 O14647 1146 1152 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 2 0.015491 110.61 By MS/MS 1 0 1 1 5656400 0 0 5656400 3650 142 3803 14964 12268 12268 1 0 0 1218800 FGLSAAEDITPR STCFTPDSLAALKARFGLSAAEDITPRFRA KARFGLSAAEDITPRFRAACEQQAVALTLQ R F G P R F 2 1 0 1 0 0 1 1 0 1 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1275.6459 Q9BUH6 Q9BUH6 64 75 C9orf142 Protein PAXX yes yes 2 7.5061E-05 142 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 21470000 0 2290600 19180000 3651 1906 3804 14965;14966;14967 12269;12270 12270 2 0 1315300 3366700 FGMFEFLSNHMR LSSLLYGSIPKAAVRFGMFEFLSNHMRDAQ AVRFGMFEFLSNHMRDAQGRLDSTRGLLCG R F G M R D 0 1 1 0 0 0 1 1 1 0 1 0 2 3 0 1 0 0 0 0 0 0 12 0 1514.6799 P53007 P53007 102 113 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2;3 1.3765E-34 211.02 By MS/MS 6.33 0.471 2 1 3 19816000 0 0 19816000 3652 918 3805 14968;14969;14970 12271;12272 12272 2 0 0 2993100 FGMLDATDGPGTEDAALR LERERARRREERRKRFGMLDATDGPGTEDA LDATDGPGTEDAALRMEVDRSPGLPMSDLK R F G L R M 3 1 0 3 0 0 1 3 0 0 2 0 1 1 1 0 2 0 0 0 0 0 18 0 1835.836 Q6WCQ1 Q6WCQ1 596 613 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 3.5706E-13 174.05 By MS/MS 1.5 0.5 1 1 2 13033000 0 0 13033000 3653 1507 3806 14971;14972 12273;12274 12274 2 0 0 2913500 FGNEVIPVTVTVK INSYTRSKAAWEAGKFGNEVIPVTVTVKGQ GKFGNEVIPVTVTVKGQPDVVVKEDEEYKR K F G V K G 0 0 1 0 0 0 1 1 0 1 0 1 0 1 1 0 2 0 0 4 0 0 13 0 1401.7868 P24752 P24752 231 243 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.034547 73.632 By MS/MS 5 0 1 1 2977000 0 2977000 0 3654 651 3807 14973 12275 12275 1 0 767380 0 FGNVYLAR TIDDFEIGRPLGKGKFGNVYLAREKKSHFI RPLGKGKFGNVYLAREKKSHFIVALKVLFK K F G A R E 1 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 8 0 938.4974 Q96GD4;Q9UQB9;O14965 Q96GD4 88 95 AURKB;AURKC;AURKA Aurora kinase B;Aurora kinase C;Aurora kinase A no no 2 0.014457 88.643 By MS/MS 5 0 1 1 5562700 0 0 5562700 3655 1790;155 3808 14974 12276 12276 1 0 0 775890 FGPALSVK GEDMDDERLKDLFGKFGPALSVKVMTDESG LKDLFGKFGPALSVKVMTDESGKSKGFGFV K F G V K V 1 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 8 0 817.46979 P11940;Q9H361 P11940 214 221 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.032544 77.282 By matching By MS/MS By MS/MS 3.6 0.8 3 1 1 1 1 3 102410000 5026900 83734000 13651000 3656 530 3809 14975;14976;14977;14978;14979 12277;12278 12277 2 5799900 35696000 2125400 FGPGVAFR SATSSFGGLGGGSVRFGPGVAFRAPSIHGG LGGGSVRFGPGVAFRAPSIHGGSGGRGVSV R F G F R A 1 1 0 0 0 0 0 2 0 0 0 0 0 2 1 0 0 0 0 1 0 0 8 0 849.44972 CON__P08727;P08727 CON__P08727 25 32 KRT19 Keratin, type I cytoskeletal 19 yes no 2 0.00063662 127.1 By MS/MS By MS/MS 4.25 0.829 1 1 2 2 2 138680000 0 49079000 89602000 + 3657 51 3810 14980;14981;14982;14983 12279;12280;12281;12282 12282 4 0 12824000 12689000 FGPIPLGSLGWK GREDRFLNSFASMHRFGPIPLGSLGWKTVK MHRFGPIPLGSLGWKTVKQPVYVVDVSKGI R F G W K T 0 0 0 0 0 0 0 3 0 1 2 1 0 1 2 1 0 1 0 0 0 0 12 0 1270.7074 Q16795 Q16795 223 234 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2 0.041745 75.294 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 31327000 0 5981700 25345000 3658 1400 3811 14984;14985;14986 12283;12284 12284 2 0 2070700 3802600 FGPLTPELMVPR SKIIPALQSRCTRFRFGPLTPELMVPRLEH RFRFGPLTPELMVPRLEHVVEEEKVDISED R F G P R L 0 1 0 0 0 0 1 1 0 0 2 0 1 1 3 0 1 0 0 1 0 0 12 0 1355.7271 P40937 P40937 174 185 RFC5 Replication factor C subunit 5 yes yes 2 9.4133E-05 140.45 By matching By MS/MS 6 0 2 1 1 39713000 0 12181000 27532000 3659 787 3812 14987;14988 12285 12285 1 0 4216600 4119100 FGPLVEQGQSR ASEGAERSLSAIRERFGPLVEQGQSRAATL IRERFGPLVEQGQSRAATLSTLAGQPLLER R F G S R A 0 1 0 0 0 2 1 2 0 0 1 0 0 1 1 1 0 0 0 1 0 0 11 0 1216.62 CON__Q03247 CON__Q03247 198 208 yes yes 2 1.4889E-13 179.37 By MS/MS By MS/MS By MS/MS 7.38 1.39 1 3 3 3 2 1 5 4 4 661620000 171730000 61000000 428890000 + 3660 72 3813 14989;14990;14991;14992;14993;14994;14995;14996;14997;14998;14999;15000;15001 12286;12287;12288;12289;12290;12291;12292;12293;12294;12295;12296;12297;12298;12299 12296 14 254610000 29159000 66015000 FGPNVPALLEAIDDAYR QLKELKDSKTDRLKRFGPNVPALLEAIDDA PNVPALLEAIDDAYRQGHFTYKPVGPLGAC R F G Y R Q 3 1 1 2 0 0 1 1 0 1 2 0 0 1 2 0 0 0 1 1 0 0 17 0 1859.9418 Q96SB8 Q96SB8 480 496 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2;3 8.2736E-06 124.12 By MS/MS 2 0 2 2 5036100 0 0 5036100 3661 1833 3814 15002;15003 12300;12301 12301 2 0 0 1138100 FGPYESYDSR SYGMDNHSGGGGGSRFGPYESYDSRSSLGG GGGSRFGPYESYDSRSSLGGRDLYRSGYGF R F G S R S 0 1 0 1 0 0 1 1 0 0 0 0 0 1 1 2 0 0 2 0 0 0 10 0 1219.5146 Q5BKZ1 Q5BKZ1 71 80 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.028028 78.516 By MS/MS By MS/MS 3 0 2 1 1 20822000 0 3398000 17424000 3662 1434 3815 15004;15005 12302;12303 12303 2 0 1448600 3379500 FGPYYTEPVIAGLDPK YTLMSMVANLLYEKRFGPYYTEPVIAGLDP GPYYTEPVIAGLDPKTFKPFICSLDLIGCP R F G P K T 1 0 0 1 0 0 1 2 0 1 1 1 0 1 3 0 1 0 2 1 0 0 16 0 1765.8927 P49720 P49720 100 115 PSMB3 Proteasome subunit beta type-3 yes yes 2 0.066876 53.252 By MS/MS 7 0 1 1 12408000 0 0 12408000 3663 862 3816 15006 12304 12304 1 0 0 2201800 FGQAATMEGIGAIGGTPPAFNR MPDGTLGLTPPTTERFGQAATMEGIGAIGG EGIGAIGGTPPAFNRAAPGAEFAPNKRRRY R F G N R A 4 1 1 0 0 1 1 5 0 2 0 0 1 2 2 0 2 0 0 0 0 0 22 0 2162.0579 Q15233 Q15233 435 456 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 0 374.06 By MS/MS By MS/MS By MS/MS 3.67 1.47 3 3 4 11 2 4 2 13 12 1288500000 13867000 602550000 672060000 3664 1351 3817;3818 15007;15008;15009;15010;15011;15012;15013;15014;15015;15016;15017;15018;15019;15020;15021;15022;15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033 12305;12306;12307;12308;12309;12310;12311;12312;12313;12314;12315;12316;12317;12318;12319;12320;12321;12322;12323;12324;12325;12326;12327;12328;12329;12330;12331;12332;12333;12334;12335;12336;12337;12338;12339;12340 12314 609 34 10818000 204610000 117160000 FGQGAHHAAGQAGNEAGR GIHHAAGQVGKEAEKFGQGAHHAAGQAGNE GAHHAAGQAGNEAGRFGQGVHHGLSEGWKE K F G G R F 5 1 1 0 0 2 1 5 2 0 0 0 0 1 0 0 0 0 0 0 0 0 18 0 1734.7935 Q6UWP8 Q6UWP8 242 259 SBSN Suprabasin yes no 3;4 0.00023211 85.563 By MS/MS By MS/MS 5.63 2.74 2 1 2 2 1 3 3 2 1 2 3 16 33090000 0 3623000 29467000 3665 1504 3819 15034;15035;15036;15037;15038;15039;15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052 12341;12342;12343;12344;12345;12346;12347;12348;12349;12350;12351 12346 11 0 1590500 30651000 FGQGGAGPVGGQGPR TMSGSMMGSDMRTERFGQGGAGPVGGQGPR FGQGGAGPVGGQGPRGMGPGTPAGYGRGRE R F G P R G 1 1 0 0 0 2 0 7 0 0 0 0 0 1 2 0 0 0 0 1 0 0 15 0 1340.6585 P23246 P23246 667 681 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 3.3725E-12 183.81 By MS/MS By MS/MS By MS/MS 4.69 2.95 2 3 2 2 1 2 1 1 2 1 9 6 842570000 86344000 348410000 407830000 3666 638 3820 15053;15054;15055;15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068 12352;12353;12354;12355;12356;12357;12358;12359;12360;12361;12362;12363;12364 12354 13 104030000 175300000 89254000 FGQGIHHAAGQVGK GAHHGLSEGWKETEKFGQGIHHAAGQVGKE KFGQGIHHAAGQVGKEAEKFGQGAHHAAGQ K F G G K E 2 0 0 0 0 2 0 4 2 1 0 1 0 1 0 0 0 0 0 1 0 0 14 0 1405.7215 Q6UWP8 Q6UWP8 224 237 SBSN Suprabasin yes yes 3 0.035532 47.189 By MS/MS 9.5 0.5 1 1 2 3701600 3701600 0 0 3667 1504 3821 15069;15070 12365;12366 12365 2 2990900 0 0 FGQGVDNAAGQAGNEAGR GVHHGANQAGSEAGKFGQGVDNAAGQAGNE GVDNAAGQAGNEAGRFGQGVHHAAGQAGNE K F G G R F 4 1 2 1 0 2 1 5 0 0 0 0 0 1 0 0 0 0 0 1 0 0 18 0 1717.7768 Q6UWP8 Q6UWP8 152 169 SBSN Suprabasin yes yes 2 2.5817E-114 262.11 By MS/MS By matching By MS/MS 5.93 3.24 2 1 1 1 1 2 1 2 3 9 1 4 89283000 77985000 1033600 10264000 3668 1504 3822 15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084 12367;12368;12369;12370;12371;12372;12373;12374;12375;12376;12377 12367 11 79822000 5229300 8882100 FGQGVHHAAGQAGNEAGR GVDNAAGQAGNEAGRFGQGVHHAAGQAGNE GVHHAAGQAGNEAGRFGQGVHHAAGQAGNE R F G G R F 4 1 1 0 0 2 1 5 2 0 0 0 0 1 0 0 0 0 0 1 0 0 18 0 1762.8248 Q6UWP8 Q6UWP8 170 187 SBSN Suprabasin yes no 3;4 0.00028612 79.514 By matching By MS/MS 5.5 2.87 2 2 2 2 2 2 2 2 2 2 1 19 41266000 0 811500 40455000 3669 1504 3823 15085;15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098;15099;15100;15101;15102;15103;15104 12378;12379;12380;12381;12382;12383;12384;12385;12386;12387;12388;12389 12385 11 0 396650 21457000 FGQGVHHAASQFGK GVHHGLSEGWKETEKFGQGVHHAASQFGKE KFGQGVHHAASQFGKETEKLGHGVHHGVNE K F G G K E 2 0 0 0 0 2 0 3 2 0 0 1 0 2 0 1 0 0 0 1 0 0 14 0 1469.7164 Q6UWP8 Q6UWP8 350 363 SBSN Suprabasin yes yes 3 0.0075279 66.285 By MS/MS 2 0.816 1 1 1 3 4700500 4700500 0 0 3670 1504 3824 15105;15106;15107 12390 12390 1 4971300 0 0 FGQGVHHGLSEGWK GAHHAAGQAGNEAGRFGQGVHHGLSEGWKE RFGQGVHHGLSEGWKETEKFGQGVHHTAGQ R F G W K E 0 0 0 0 0 1 1 4 2 0 1 1 0 1 0 1 0 1 0 1 0 0 14 0 1537.7426 Q6UWP8 Q6UWP8 260 273 SBSN Suprabasin yes no 2;3 0.025136 71.888 By MS/MS 9.5 0.5 2 2 4 36648000 36648000 0 0 3671 1504 3825 15108;15109;15110;15111 12391;12392 12391 2 27599000 0 0 FGQTKPVYVYR WNPSYDIQSIFRVYRFGQTKPVYVYRFLAQ RVYRFGQTKPVYVYRFLAQGTMEDKIYDRQ R F G Y R F 0 1 0 0 0 1 0 1 0 0 0 1 0 1 1 0 1 0 2 2 0 0 11 1 1356.719 P46100 P46100 2154 2164 ATRX Transcriptional regulator ATRX yes yes 3 0.020253 66.056 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 43530000 5496100 7597800 30437000 3672 825 3826 15112;15113;15114;15115 12393;12394;12395 12394 3 5496100 3713700 6645400 FGQYAGHVVPTILEK AAKCLTGLAVGLRKKFGQYAGHVVPTILEK FGQYAGHVVPTILEKFKEKKPQVVQALQEA K F G E K F 1 0 0 0 0 1 1 2 1 1 1 1 0 1 1 0 1 0 1 2 0 0 15 0 1657.8828 Q14008 Q14008 355 369 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 2.6889E-07 166.48 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 218450000 0 13211000 205240000 3673 1279 3827 15116;15117;15118;15119;15120 12396;12397;12398;12399 12398 4 0 6457400 44922000 FGSEFSPELQASFQK FRLLGNVLVVVLARRFGSEFSPELQASFQK FGSEFSPELQASFQKVVTGVANALAHRYH_ R F G Q K V 1 0 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 15 0 1700.8046 CON__Q3SX09 CON__Q3SX09 173 187 yes yes 2;3 2.8804E-34 206.97 By MS/MS By MS/MS By MS/MS 8.18 2.2 2 1 1 3 4 6 7 4 6 1046400000 156460000 42845000 847130000 + 3674 82 3828 15121;15122;15123;15124;15125;15126;15127;15128;15129;15130;15131;15132;15133;15134;15135;15136;15137 12400;12401;12402;12403;12404;12405;12406;12407;12408;12409;12410;12411;12412;12413;12414;12415;12416;12417 12402 18 144590000 207200000 509560000 FGSGMNMGR GMEGPFGGGMENMGRFGSGMNMGRINEILS MENMGRFGSGMNMGRINEILSNALKRGEII R F G G R I 0 1 1 0 0 0 0 3 0 0 0 0 2 1 0 1 0 0 0 0 0 0 9 0 955.40041 P52272 P52272 363 371 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 2.8241E-07 158.36 By matching By MS/MS By MS/MS 2 0.816 2 2 2 1 2 3 197040000 900100 79552000 116590000 3675 902 3829 15138;15139;15140;15141;15142;15143 12418;12419;12420;12421 12419 4 900100 34063000 22976000 FGTEELFKDEATDGGGDNKEGEDSSVIHYDDK KTGSMSKQELDDILKFGTEELFKDEATDGG NKEGEDSSVIHYDDKAIERLLDRNQDETED K F G D K A 1 0 1 6 0 0 5 5 1 1 1 3 0 2 0 2 2 0 1 1 0 0 32 2 3503.5125 Q14839 Q14839 1221 1252 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 4 2.23E-55 170.36 By MS/MS 1.5 0.5 1 1 2 25237000 0 0 25237000 3676 1321 3830 15144;15145 12422 12422 1 0 0 5498600 FGVEQPEGDEDLTK KGKNICEGGEEMDNKFGVEQPEGDEDLTKE KFGVEQPEGDEDLTKEKGHGGCGRYQPRIR K F G T K E 0 0 0 2 0 1 3 2 0 0 1 1 0 1 1 0 1 0 0 1 0 0 14 0 1562.71 P24928 P24928 164 177 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.02747 70.728 By MS/MS 1.5 0.5 1 1 2 11106000 0 0 11106000 3677 653 3831 15146;15147 12423 12423 1 0 0 2422400 FGVFNYSPFR AMQEMEVYVENIRRKFGVFNYSPFRTPYTP NIRRKFGVFNYSPFRTPYTPNSQYQMLLDP K F G F R T 0 1 1 0 0 0 0 1 0 0 0 0 0 3 1 1 0 0 1 1 0 0 10 0 1232.5978 Q9ULU4 Q9ULU4 357 366 ZMYND8 Protein kinase C-binding protein 1 yes yes 2 0.0002131 121.96 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 4698700 0 0 4698700 3678 2190 3832 15148;15149;15150 12424;12425 12425 2 0 0 1035200 FGVSSESKPEEVKK MSEGFKFSKPIGDFKFGVSSESKPEEVKKD KFGVSSESKPEEVKKDSKNDNFKFGLSSGL K F G K K D 0 0 0 0 0 0 3 1 0 0 0 3 0 1 1 3 0 0 0 2 0 0 14 2 1549.7988 P49790 P49790 961 974 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.035421 54.598 By MS/MS 1 0 1 1 3442400 0 0 3442400 3679 870 3833 15151 12426 12426 1 0 0 741720 FGVVLDEIKPSSAPELQAVR ERDVFLYRAYLAQRKFGVVLDEIKPSSAPE DEIKPSSAPELQAVRMFADYLAHESRRDSI K F G V R M 2 1 0 1 0 1 2 1 0 1 2 1 0 1 2 2 0 0 0 3 0 0 20 1 2154.1685 O14579 O14579 66 85 COPE Coatomer subunit epsilon yes yes 3 9.171E-06 87.16 By matching By MS/MS 6 0 2 1 1 6370400 0 1870900 4499500 3680 137 3834 15152;15153 12427 12427 1 0 647630 673180 FGYQFTQQGPR LEMAKMLEENTNILKFGYQFTQQGPRTRAA NILKFGYQFTQQGPRTRAANAITKNNDLVR K F G P R T 0 1 0 0 0 3 0 2 0 0 0 0 0 2 1 0 1 0 1 0 0 0 11 0 1327.6309 Q9NYL9 Q9NYL9 318 328 TMOD3 Tropomodulin-3 yes yes 2 2.1383E-13 176.79 By MS/MS 5.5 0.5 1 1 2 22737000 0 22737000 0 3681 2099 3835 15154;15155 12428;12429 12428 2 0 6320800 0 FGYSVNR ______________________________ KGKTRRQKFGYSVNRKRLNRNARRKAAPRI K F G N R K 0 1 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 7 0 841.40825 Q9Y3C1 Q9Y3C1 13 19 NOP16 Nucleolar protein 16 yes yes 2 0.014847 111.81 By matching By MS/MS 7 0 2 1 1 19353000 0 7179100 12174000 3682 2268 3836 15156;15157 12430 12430 1 0 4122300 2160200 FGYVDFESAEDLEK NDLAVVDVRIGMTRKFGYVDFESAEDLEKA KFGYVDFESAEDLEKALELTGLKVFGNEIK K F G E K A 1 0 0 2 0 0 3 1 0 0 1 1 0 2 0 1 0 0 1 1 0 0 14 0 1647.7304 P19338 P19338 349 362 NCL Nucleolin yes yes 2 0.00041133 142.07 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 2 4 181170000 0 8523600 172650000 3683 604 3837 15158;15159;15160;15161;15162;15163 12431;12432;12433;12434;12435 12435 5 0 3764200 36270000 FHEQFIVR EASKQLESSRQLASRFHEQFIVREDLMGLA SRQLASRFHEQFIVREDLMGLAIGTHGANI R F H V R E 0 1 0 0 0 1 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 8 0 1074.5611 Q06787 Q06787 219 226 FMR1 Fragile X mental retardation protein 1 yes yes 2 0.0045305 101.33 By MS/MS 3 0 1 1 5246700 0 5246700 0 3684 1172 3838 15164 12436 12436 1 0 2236700 0 FHFIDIYLDELSK KEVLCPESQSPNGVRFHFIDIYLDELSKVG VRFHFIDIYLDELSKVGGKELLADQNLKFI R F H S K V 0 0 0 2 0 0 1 0 1 2 2 1 0 2 0 1 0 0 1 0 0 0 13 0 1638.8294 Q14684 Q14684 166 178 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2;3 0.0081651 89.805 By matching By MS/MS 2 0 3 1 2 9223800 378420 0 8845400 3685 1313 3839 15165;15166;15167 12437;12438 12437 2 455950 0 1998900 FHFSDKPQPDSKPTYSR KSRICAQLARFSEEKFHFSDKPQPDSKPTY FSDKPQPDSKPTYSRGRSSNAYDPSQMCAE K F H S R G 0 1 0 2 0 1 0 0 1 0 0 2 0 2 3 3 1 0 1 0 0 0 17 2 2035.9752 Q9NRL2 Q9NRL2 941 957 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 4 0.00067249 83.106 By MS/MS 1.5 0.5 1 1 2 31978000 0 0 31978000 3686 2045 3840 15168;15169 12439;12440 12440 2 0 0 6985600 FHHTFSTEIAK QQYQDAANNLREDYKFHHTFSTEIAKFLKV EDYKFHHTFSTEIAKFLKVSQGQLVVMQPE K F H A K F 1 0 0 0 0 0 1 0 2 1 0 1 0 2 0 1 2 0 0 0 0 0 11 0 1316.6513 P13667 P13667 336 346 PDIA4 Protein disulfide-isomerase A4 yes yes 3 0.060794 41.689 By MS/MS 3 0 1 1 18759000 0 0 18759000 3687 549 3841 15170 12441 12441 1 0 0 3638400 FHLATAEWIAEPVR GGQNVNKVNSKAEVRFHLATAEWIAEPVRQ RFHLATAEWIAEPVRQKIAITHKNKINRLG R F H V R Q 3 1 0 0 0 0 2 0 1 1 1 0 0 1 1 0 1 1 0 1 0 0 14 0 1638.8518 Q14197 Q14197 103 116 ICT1 Peptidyl-tRNA hydrolase ICT1, mitochondrial yes yes 3 0.0019073 80.469 By matching By MS/MS 6.67 0.471 1 2 2 1 6926400 1209700 0 5716700 3688 1289 3842 15171;15172;15173 12442 12442 1 1917300 0 1014400 FHLQNTLYPQYDPVYR VYIEDVIERVIQYTKFHLQNTLYPQYDPVY HLQNTLYPQYDPVYRLDPHGGGLLSSKAKR K F H Y R L 0 1 1 1 0 2 0 0 1 0 2 0 0 1 2 0 1 0 3 1 0 0 16 0 2053.0058 Q6KC79 Q6KC79 1342 1357 NIPBL Nipped-B-like protein yes yes 2 3.007E-74 242.82 By MS/MS 1 0 1 1 8058500 0 0 8058500 3689 1480 3843 15174 12443 12443 1 0 0 1736300 FHNLEGFLEEFADIAK LEELFHLLNFLTPERFHNLEGFLEEFADIA HNLEGFLEEFADIAKEDQIKKLHDMLGPHM R F H A K E 2 0 1 1 0 0 3 1 1 1 2 1 0 3 0 0 0 0 0 0 0 0 16 0 1878.9152 Q14839 Q14839 924 939 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 6.4796E-06 124.25 By MS/MS 1.5 0.5 1 1 2 2928200 0 0 2928200 3690 1321 3844 15175;15176 12444 12444 1 0 0 647770 FHPNGSTLASAGFDR IMLLSGHEGEVYCCKFHPNGSTLASAGFDR FHPNGSTLASAGFDRLILLWNVYGDCDNYA K F H D R L 2 1 1 1 0 0 0 2 1 0 1 0 0 2 1 2 1 0 0 0 0 0 15 0 1575.743 Q96DI7 Q96DI7 74 88 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2 0.00029171 122.33 By MS/MS 5.5 0.5 1 1 2 17987000 0 0 17987000 3691 1767 3845 15177;15178 12445 12445 1 0 0 2568700 FHSPPDKDEAEAPSQK QPYSKDSPFGLSFVRFHSPPDKDEAEAPSQ HSPPDKDEAEAPSQKVTVTKLGQFRVKEED R F H Q K V 2 0 0 2 0 1 2 0 1 0 0 2 0 1 3 2 0 0 0 0 0 0 16 1 1781.822 P18887 P18887 149 164 XRCC1 DNA repair protein XRCC1 yes yes 3 0.033381 44.567 By MS/MS 3 0 1 1 4606400 0 0 4606400 3692 603 3846 15179 12446 12446 1 0 0 893430 FHSQLMR VYKTDQAQDVKKIEKFHSQLMRLMVAKEAR QDVKKIEKFHSQLMRLMVAKEARNVTMETE K F H M R L 0 1 0 0 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 0 7 0 917.45416 P49458 P49458 65 71 SRP9 Signal recognition particle 9 kDa protein yes yes 2 0.0021746 146.21 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 82300000 0 22415000 59885000 3693 857 3847 15180;15181;15182 12447;12448;12449 12449 3 0 113400000 110830000 FHTITTSYYR KKIKLQIWDTAGQERFHTITTSYYRGAMGI AGQERFHTITTSYYRGAMGIMLVYDITNGK R F H Y R G 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 1 3 0 2 0 0 0 10 0 1287.6248 P61026 P61026 71 80 RAB10 Ras-related protein Rab-10 yes yes 2 0.00064155 131.06 By MS/MS 7 0 1 1 5613600 0 0 5613600 3694 976 3848 15183 12450 12450 1 0 0 996100 FIAHVPVPSQQEIEEALVR EEGSQEKGGDDSQQKFIAHVPVPSQQEIEE VPVPSQQEIEEALVRRKKMELLQKYASETL K F I V R R 2 1 0 0 0 2 3 0 1 2 1 0 0 1 2 1 0 0 0 3 0 0 19 0 2161.1532 Q9ULR0 Q9ULR0 239 257 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 3 1.3099E-05 94.01 By MS/MS By MS/MS 6 0 2 1 1 9306300 0 2525300 6781000 3695 2189 3849 15184;15185 12451;12452 12452 1 0 874170 1014500 FIASTGMDR HSGLTTGVAFGHHAKFIASTGMDRSLKFYS FGHHAKFIASTGMDRSLKFYSL________ K F I D R S 1 1 0 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 9 0 996.46987 Q9UMS4 Q9UMS4 489 497 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 2.6407E-11 170.66 By MS/MS By MS/MS 5.62 3.2 1 2 2 1 2 5 3 138880000 0 48519000 90362000 3696 2199 3850 15186;15187;15188;15189;15190;15191;15192;15193 12453;12454;12455;12456;12457 12456 5 0 19080000 19791000 FIDPLAKEEENVGIDITEPLYMQR NVAACKENFQRFLQRFIDPLAKEEENVGID ENVGIDITEPLYMQRLGEINVIGEPFLNVN R F I Q R L 1 1 1 2 0 1 4 1 0 3 2 1 1 1 2 0 1 0 1 1 0 0 24 1 2819.4051 P33991 P33991 173 196 MCM4 DNA replication licensing factor MCM4 yes yes 3 3.7781E-10 91.583 By MS/MS 2 0 1 1 4971200 0 0 4971200 3697 731 3851 15194 12458 12458 1 0 0 1123400 FIDTSQFILNR LDSRAEACFVNCVERFIDTSQFILNRLEQT CVERFIDTSQFILNRLEQTQKSKPVFSESL R F I N R L 0 1 1 1 0 1 0 0 0 2 1 0 0 2 0 1 1 0 0 0 0 0 11 0 1352.7089 O60220 O60220 70 80 TIMM8A Mitochondrial import inner membrane translocase subunit Tim8 A yes yes 2 0.00032816 129.1 By MS/MS 10 0 1 1 2790600 0 2790600 0 3698 220 3852 15195 12459 12459 1 0 14118000 0 FIDTTSK LVQTKRRALEKIDLKFIDTTSKFGHGRFQT ALEKIDLKFIDTTSKFGHGRFQTMEEKKAF K F I S K F 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 0 0 0 7 0 810.41233 P39023;Q92901 P39023 367 373 RPL3;RPL3L 60S ribosomal protein L3;60S ribosomal protein L3-like yes no 2 0.027939 94.407 By matching By MS/MS 5 0.816 1 1 1 1 2 7446000 3081000 4365000 0 3699 778 3853 15196;15197;15198 12460 12460 1 2403700 1166700 0 FIEGISEK VDCCKTLDQAKAVLKFIEGISEKTLRSTVA QAKAVLKFIEGISEKTLRSTVALTAARGRG K F I E K T 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 1 0 0 0 0 0 0 8 0 921.48075 Q9H0A0 Q9H0A0 267 274 NAT10 N-acetyltransferase 10 yes yes 2 0.018852 85.212 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 26743000 0 10507000 16236000 3700 1959 3854 15199;15200;15201 12461;12462 12461 2 0 4731600 3550100 FIEIAAR KLNTLLQRAPQCLGKFIEIAARKKRNFILD RAPQCLGKFIEIAARKKRNFILDQTNVSAA K F I A R K 2 1 0 0 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 818.46504 Q00839 Q00839 566 572 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 1;2 0.011689 143.02 By matching By MS/MS By MS/MS 3.93 2.68 3 3 2 2 1 2 1 1 7 6 477810000 1769500 177200000 298840000 3701 1127 3855 15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215 12463;12464;12465;12466;12467;12468;12469;12470;12471;12472;12473;12474 12471 12 1769500 79233000 78729000 FIFDVGTR LDPATEARYRREGARFIFDVGTRLGLHYDT YRREGARFIFDVGTRLGLHYDTLATGIIYF R F I T R L 0 1 0 1 0 0 0 1 0 1 0 0 0 2 0 0 1 0 0 1 0 0 8 0 953.49707 O75909 O75909 56 63 CCNK Cyclin-K yes yes 2 0.022107 82.671 By MS/MS 3 0 1 1 3974500 0 0 3974500 3702 288 3856 15216 12475 12475 1 0 0 770860 FIFMLSTR QREAIEAFNAPNSSKFIFMLSTRAGGLGIN NAPNSSKFIFMLSTRAGGLGINLASADVVI K F I T R A 0 1 0 0 0 0 0 0 0 1 1 0 1 2 0 1 1 0 0 0 0 0 8 0 1013.5368 P28370 P28370 568 575 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 7.0318E-06 155.51 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 15468000 0 2064100 13404000 3703 693 3857 15217;15218;15219;15220 12476;12477 12477 2 0 929500 2987600 FIFNYVYHPK KLYSLLKHLKLCHSRFIFNYVYHPKGARID LCHSRFIFNYVYHPKGARIDVSINECYDGS R F I P K G 0 0 1 0 0 0 0 0 1 1 0 1 0 2 1 0 0 0 2 1 0 0 10 0 1326.6761 Q15022 Q15022 474 483 SUZ12 Polycomb protein SUZ12 yes yes 3 0.073121 37.556 By MS/MS 2 0.816 1 1 1 3 12377000 0 0 12377000 3704 1333 3858 15221;15222;15223 12478 12478 1 0 0 2542100 FIGSPPGYVGHEEGGQLTK RLDMSEFQERHEVAKFIGSPPGYVGHEEGG PPGYVGHEEGGQLTKKLKQCPNAVVLFDEV K F I T K K 0 0 0 0 0 1 2 5 1 1 1 1 0 1 2 1 1 0 1 1 0 0 19 0 1971.969 Q9H078 Q9H078 423 441 CLPB Caseinolytic peptidase B protein homolog yes yes 3 0.00046252 71.742 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 39155000 0 10080000 29075000 3705 1958 3859 15224;15225;15226 12479;12480 12479 2 0 3345100 5005400 FIHDQTSPNPK EAVVVVCPMETIKVKFIHDQTSPNPKYRGF IKVKFIHDQTSPNPKYRGFFHGVREIVREQ K F I P K Y 0 0 1 1 0 1 0 0 1 1 0 1 0 1 2 1 1 0 0 0 0 0 11 0 1282.6306 P53007 P53007 150 160 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 3 0.046081 48.442 By MS/MS 6 0 1 1 2119500 0 0 2119500 3706 918 3860 15227 12481 12481 1 0 0 317110 FIIENTDLAVANSIR QPTVRITELTDENVKFIIENTDLAVANSIR FIIENTDLAVANSIRRVFIAEVPIIAIDWV K F I I R R 2 1 2 1 0 0 1 0 0 3 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1674.8941 P19387 P19387 21 35 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 2 2.6782E-17 186.74 By matching By MS/MS By MS/MS 6 0 3 1 1 1 16386000 2011300 2258000 12117000 3707 606 3861 15228;15229;15230 12482;12483 12483 2 2678000 781650 1812900 FIIHAPPGEFNEVFNDVR EEQLSDEEKVRIAAKFIIHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLREGAAH K F I V R L 1 1 2 1 0 0 2 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 18 0 2100.0429 P47755 P47755 20 37 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 3 3.3425E-06 105.17 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 12122000 0 4703500 7418600 3708 836 3862 15231;15232;15233 12484;12485 12485 2 0 1628200 1148700 FIIPNVVK ESRLNLVQRNVNIFKFIIPNVVKYSPNCKL RNVNIFKFIIPNVVKYSPNCKLLIVSNPVD K F I V K Y 0 0 1 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 2 0 0 8 0 928.57459 P00338 P00338 119 126 LDHA L-lactate dehydrogenase A chain yes yes 2 0.025152 80.294 By MS/MS By MS/MS 7.25 1.64 2 1 1 1 3 74029000 21863000 0 52165000 3709 356 3863 15234;15235;15236;15237 12486;12487;12488 12487 3 29111000 0 21953000 FIIPQIVK ESRLNLVQRNVNVFKFIIPQIVKYSPDCII RNVNVFKFIIPQIVKYSPDCIIIVVSNPVD K F I V K Y 0 0 0 0 0 1 0 0 0 3 0 1 0 1 1 0 0 0 0 1 0 0 8 0 956.60589 P07195 P07195 120 127 LDHB L-lactate dehydrogenase B chain yes yes 2 0.045028 74.191 By MS/MS By MS/MS 6 0 2 1 1 62729000 0 18778000 43950000 3710 452 3864 15238;15239 12489;12490 12489 2 0 6500400 6575500 FIKPIFTDESYLELYR LQVVWQRSRDICLKKFIKPIFTDESYLELY IKPIFTDESYLELYRKQKKHLNTQQLTAFQ K F I Y R K 0 1 0 1 0 0 2 0 0 2 2 1 0 2 1 1 1 0 2 0 0 0 16 1 2033.051 Q01780 Q01780 481 496 EXOSC10 Exosome component 10 yes yes 3 1.1588E-05 112.63 By MS/MS 2.5 0.5 1 1 2 11597000 0 0 11597000 3711 1138 3865 15240;15241 12491 12491 1 0 0 2570700 FILDAPDLGQLMK LENEKDNFEKGAEDRFILDAPDLGQLMKIN DRFILDAPDLGQLMKINVGHNNKGGSAGWF R F I M K I 1 0 0 2 0 1 0 1 0 1 3 1 1 1 1 0 0 0 0 0 0 0 13 0 1459.7745 Q8IVV2 Q8IVV2 223 235 LOXHD1 Lipoxygenase homology domain-containing protein 1 yes yes 2 0.013795 85.67 By MS/MS 1 0 1 1 10235000 0 10235000 0 3712 1572 3866 15242 12492 12492 650 1 0 5002900 0 FILIQNR ______________________________ ______________________________ R F I N R A 0 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 902.53379 P53680 P53680 4 10 AP2S1 AP-2 complex subunit sigma yes yes 2 3.9819E-06 126.05 By MS/MS By MS/MS 9 0 2 1 1 13176000 0 0 13176000 3713 923 3867 15243;15244 12493;12494 12493 2 0 0 4209000 FILPEGASQGMTPFR PCRARGRTNIELREKFILPEGASQGMTPFR FILPEGASQGMTPFRSRGRRSKPSSRAASP K F I F R S 1 1 0 0 0 1 1 2 0 1 1 0 1 2 2 1 1 0 0 0 0 0 15 0 1649.8236 Q9UPN3 Q9UPN3 7202 7216 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes yes 2 0.0030515 87.618 By MS/MS 1 0 1 1 1924200 0 1924200 0 3714 2214 3868 15245 12495 12495 1 0 940500 0 FIMESGAK LGGLAVRRACYGVLRFIMESGAKGCEVVVS ACYGVLRFIMESGAKGCEVVVSGKLRGQRA R F I A K G 1 0 0 0 0 0 1 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 8 0 881.43169 P23396 P23396 125 132 RPS3 40S ribosomal protein S3 yes yes 2 0.0061689 98.418 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 124800000 0 61433000 63368000 3715 641 3869 15246;15247;15248;15249;15250 12496;12497;12498;12499 12498 4 0 25901000 9955200 FINEDRLPHLLLYGPPGTGK NDLISHQDILSTIQKFINEDRLPHLLLYGP RLPHLLLYGPPGTGKTSTILACAKQLYKDK K F I G K T 0 1 1 1 0 0 1 3 1 1 4 1 0 1 3 0 1 0 1 0 0 0 20 1 2236.2004 P40937 P40937 47 66 RFC5 Replication factor C subunit 5 yes yes 4 4.7447E-05 77.391 By matching By MS/MS 6 0 2 1 1 6272800 0 2354300 3918500 3716 787 3870 15251;15252 12500 12500 1 0 814970 586240 FINLFPETK CSVATRALLLSTYIKFINLFPETKATIQGV LSTYIKFINLFPETKATIQGVLRAGSQLRN K F I T K A 0 0 1 0 0 0 1 0 0 1 1 1 0 2 1 0 1 0 0 0 0 0 9 0 1107.5964 O95782 O95782 548 556 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.018513 83.206 By MS/MS 2 0 1 1 2763100 0 2763100 0 3717 339 3871 15253 12501 12501 1 0 1244300 0 FINMFAVLDELK RKDFVSEAYLITLGKFINMFAVLDELKNMK LGKFINMFAVLDELKNMKCSVKNDHSAYKR K F I L K N 1 0 1 1 0 0 1 0 0 1 2 1 1 2 0 0 0 0 0 1 0 0 12 0 1438.753 Q7L576;Q96F07 Q7L576 164 175 CYFIP1;CYFIP2 Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2 yes no 2 0.0067147 99.53 By MS/MS 1.5 0.5 1 1 2 12518000 0 0 12518000 3718 1524 3872 15254;15255 12502;12503 12503 2 0 0 2815300 FIPDIYIYTDHMK MANRIVDSARSILNKFIPDIYIYTDHMKGV NKFIPDIYIYTDHMKGVNSGKSPGFGLSLV K F I M K G 0 0 0 2 0 0 0 0 1 3 0 1 1 1 1 0 1 0 2 0 0 0 13 0 1654.8065 Q9Y2P8 Q9Y2P8 219 231 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 3 0.0095191 68.034 By matching By MS/MS By MS/MS 5.25 0.829 1 1 2 1 1 2 24228000 3556600 2821300 17850000 3719 2243 3873 15256;15257;15258;15259 12504;12505;12506 12506 3 2774800 976640 2543400 FIPEFIR NYIIIMDADLSHHPKFIPEFIRKQKEGNFD ADLSHHPKFIPEFIRKQKEGNFDIVSGTRY K F I I R K 0 1 0 0 0 0 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 7 0 920.51199 O60762 O60762 127 133 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 0.0027075 137.5 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 9658600 0 3603300 6055300 3720 231 3874 15260;15261 12507;12508 12507 2 0 2069000 905940 FIPGLQMLSDAAPGK NADVAELLVVEKDTRFIPGLQMLSDAAPGK FIPGLQMLSDAAPGKLRIVHGDVLTFKVEK R F I G K L 2 0 0 1 0 1 0 2 0 1 2 1 1 1 2 1 0 0 0 0 0 0 15 0 1543.8068 Q8WVM0 Q8WVM0 90 104 TFB1M Dimethyladenosine transferase 1, mitochondrial yes yes 2 0.0016701 93.345 By MS/MS 6 0 1 1 5832700 0 5832700 0 3721 1683 3875 15262 12509 12509 1 0 2019100 0 FIPLAELK KWSMVDVQFVRMMKRFIPLAELKSYHQAHK FVRMMKRFIPLAELKSYHQAHKATGGPLKN R F I L K S 1 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 8 0 929.5586 Q9P016 Q9P016 172 179 THYN1 Thymocyte nuclear protein 1 yes yes 2 0.047348 73.616 By MS/MS By matching 6.33 0.471 2 1 1 2 37139000 0 3819000 33320000 3722 2111 3876 15263;15264;15265 12510 12510 1 0 1322000 5232100 FIQDHLKPSPQFQEQVK MALDLSQIPTKELDRFIQDHLKPSPQFQEQ QDHLKPSPQFQEQVKKAIDIILRCLHENCV R F I V K K 0 0 0 1 0 4 1 0 1 1 1 2 0 2 2 1 0 0 0 1 0 0 17 1 2068.0742 Q9Y6K5 Q9Y6K5 419 435 OAS3 2-5-oligoadenylate synthase 3 yes yes 4 0.005015 58.461 By MS/MS 2 0 1 1 8843600 0 0 8843600 3723 2314 3877 15266 12511 12511 1 0 0 1998500 FIQPNIGELPTALK KEGLDEVAGIINDAKFIQPNIGELPTALKG KFIQPNIGELPTALKGRLNDSNKILVQQTL K F I L K G 1 0 1 0 0 1 1 1 0 2 2 1 0 1 2 0 1 0 0 0 0 0 14 0 1539.8661 Q14008 Q14008 893 906 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00037432 132.32 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 156590000 0 53808000 102780000 3724 1279 3878 15267;15268;15269;15270;15271 12512;12513;12514;12515 12512 4 0 25377000 22309000 FIQYLASR SLITTHHLMVYGNERFIQYLASRNTLFNLS MVYGNERFIQYLASRNTLFNLSNFLDKSGL R F I S R N 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 8 0 996.53927 Q13492;O60641 Q13492 93 100 PICALM;SNAP91 Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180 yes no 2 0.013274 89.752 By MS/MS 3 0 1 1 5756800 0 0 5756800 3725 1252 3879 15272 12516 12516 1 0 0 1116500 FISEFLQPNR MPALLYQTPAGDLDKFISEFLQPNRQFLAQ GDLDKFISEFLQPNRQFLAQVNKAVDTICS K F I N R Q 0 1 1 0 0 1 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 0 10 0 1249.6455 Q9Y6K5 Q9Y6K5 758 767 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 9.5764E-13 174.52 By MS/MS 2 0 1 1 3789700 0 3789700 0 3726 2314 3880 15273 12517 12517 1 0 1706600 0 FISETLR THYSELTTLTSQYIKFISETLRRMEEEERL TLTSQYIKFISETLRRMEEEERLAEQQRAE K F I L R R 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 7 0 864.47052 Q15149 Q15149 1473 1479 PLEC Plectin yes yes 2 0.026313 95.793 By MS/MS 1 0 1 1 17381000 0 17381000 0 3727 1348 3881 15274 12518 12518 1 0 8495400 0 FISGHTSELGDFR KEVLLPEVGAKGQLKFISGHTSELGDFRFT LKFISGHTSELGDFRFTLLPPTSPGDTAPK K F I F R F 0 1 0 1 0 0 1 2 1 1 1 0 0 2 0 2 1 0 0 0 0 0 13 0 1464.6997 Q13724 Q13724 229 241 MOGS Mannosyl-oligosaccharide glucosidase yes yes 3 0.015056 62.891 By MS/MS 2 0 1 1 7779700 0 7779700 0 3728 1266 3882 15275 12519 12519 1 0 3503300 0 FISLASLEYSDYSK DSSVAVSSGGELFLRFISLASLEYSDYSKC RFISLASLEYSDYSKCKKIMIERGELFLRR R F I S K C 1 0 0 1 0 0 1 0 0 1 2 1 0 1 0 4 0 0 2 0 0 0 14 0 1621.7876 Q14232 Q14232 75 88 EIF2B1 Translation initiation factor eIF-2B subunit alpha yes yes 2 0.00065064 116.55 By matching By MS/MS 5 0.816 1 1 1 2 1 10986000 0 3174300 7811300 3729 1293 3883 15276;15277;15278 12520 12520 1 0 971990 1168700 FITDNTVEER RAHRIGQTKTVRVFRFITDNTVEERIVERA VRVFRFITDNTVEERIVERAEMKLRLDSIV R F I E R I 0 1 1 1 0 0 2 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1222.583 O60264 O60264 607 616 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 2.146E-16 178.94 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 91162000 0 32673000 58489000 3730 223 3884 15279;15280;15281;15282 12521;12522;12523;12524 12522 4 0 15017000 12977000 FITHAPPGEFNEVFNDVR DDRVSDEEKVRIAAKFITHAPPGEFNEVFN HAPPGEFNEVFNDVRLLLNNDNLLREGAAH K F I V R L 1 1 2 1 0 0 2 1 1 1 0 0 0 3 2 0 1 0 0 2 0 0 18 0 2088.0065 P52907 P52907 20 37 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2;3 0.00025138 95.183 By MS/MS By MS/MS 6 0 3 1 2 46728000 0 18197000 28531000 3731 914 3885 15283;15284;15285 12525;12526 12525 2 0 6299100 4268600 FITIFGTR LFQAGELKWGTDEEKFITIFGTRSVSHLRK WGTDEEKFITIFGTRSVSHLRKVFDKYMTI K F I T R S 0 1 0 0 0 0 0 1 0 2 0 0 0 2 0 0 2 0 0 0 0 0 8 0 953.53345 P08758 P08758 194 201 ANXA5 Annexin A5 yes yes 2 1.893E-06 161.68 By MS/MS By MS/MS 7.25 1.64 2 1 1 1 3 12298000 2856400 0 9442000 3732 479 3886 15286;15287;15288;15289 12527;12528 12528 2 3803300 0 3271000 FIVNTLK EEEQLSSNCVCQIHRFIVNTLKDGRRVVIL NCVCQIHRFIVNTLKDGRRVVILMELEVLK R F I L K D 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 1 0 0 1 0 0 7 0 833.50109 P27694 P27694 82 88 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.011521 118.01 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 32710000 0 11264000 21446000 3733 679 3887 15290;15291;15292 12529;12530 12530 2 0 4395400 4159500 FKDLGEEHFK GVFRRDTHKSEIAHRFKDLGEEHFKGLVLI EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP R F K F K G 0 0 0 1 0 0 2 1 1 0 1 2 0 2 0 0 0 0 0 0 0 0 10 1 1248.6139 CON__P02769 CON__P02769 35 44 yes yes 2;3 0.00088445 126.39 By MS/MS By MS/MS By MS/MS 4.95 2.46 1 1 4 6 3 1 1 1 1 2 12 4 5 959730000 789230000 36134000 134370000 + 3734 45 3888 15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303;15304;15305;15306;15307;15308;15309;15310;15311;15312;15313 12531;12532;12533;12534;12535;12536;12537;12538;12539;12540;12541;12542;12543;12544;12545;12546;12547;12548;12549 12545 19 758440000 46295000 25174000 FKDLGEENFK GVFRRDAHKSEVAHRFKDLGEENFKALVLI EVAHRFKDLGEENFKALVLIAFAQYLQQCP R F K F K A 0 0 1 1 0 0 2 1 0 0 1 2 0 2 0 0 0 0 0 0 0 0 10 1 1225.5979 CON__P02768-1;P02768 CON__P02768-1 35 44 ALB Serum albumin yes no 2;3 7.6287E-38 212.03 By MS/MS By matching 5.89 2.69 2 2 2 2 4 3 3 3 4 2 25 2 1220400000 1217300000 3116400 0 + 3735 44 3889 15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334;15335;15336;15337;15338;15339;15340 12550;12551;12552;12553;12554;12555;12556;12557;12558;12559;12560;12561;12562;12563;12564;12565;12566;12567;12568;12569 12552 20 1041900000 1154800 0 FKEANNFLWPFK CMEDLIHEIYTVGKRFKEANNFLWPFKLSS GKRFKEANNFLWPFKLSSPRGGMKKKTTHF R F K F K L 1 0 2 0 0 0 1 0 0 0 1 2 0 3 1 0 0 1 0 0 0 0 12 1 1539.7874 P18124 P18124 201 212 RPL7 60S ribosomal protein L7 yes yes 2;3 0.000286 149.17 By MS/MS By MS/MS 6 0 4 2 2 100820000 0 68220000 32605000 3736 594 3890 15341;15342;15343;15344 12570;12571;12572;12573;12574 12573 5 0 23615000 4878000 FKEQLTPSQIMSLEK AYRAEWQVYKEEISRFKEQLTPSQIMSLEK FKEQLTPSQIMSLEKEIMDKHLKRKAMTKK R F K E K E 0 0 0 0 0 2 2 0 0 1 2 2 1 1 1 2 1 0 0 0 0 0 15 1 1777.9284 Q00059 Q00059 117 131 TFAM Transcription factor A, mitochondrial yes yes 2;3 5.8542E-11 181.98 By MS/MS By MS/MS 7.2 0.4 8 2 4 6 544030000 0 84344000 459690000 3737 1120 3891;3892 15345;15346;15347;15348;15349;15350;15351;15352;15353;15354 12575;12576;12577;12578;12579;12580;12581;12582;12583 12578 531 9 0 48431000 81416000 FKGQILMPNIGYGSNK NWRKPRGIDNRVRRRFKGQILMPNIGYGSN KGQILMPNIGYGSNKKTKHMLPSGFRKFLV R F K N K K 0 0 2 0 0 1 0 3 0 2 1 2 1 1 1 1 0 0 1 0 0 0 16 1 1765.9185 P62910 P62910 49 64 RPL32 60S ribosomal protein L32 yes yes 2;3 0.001582 99.531 By MS/MS By MS/MS 7.25 0.661 1 4 3 4 4 103620000 0 65363000 38256000 3738 1050 3893;3894 15355;15356;15357;15358;15359;15360;15361;15362 12584;12585;12586;12587;12588;12589;12590 12587 505 7 0 36991000 6163000 FKGQILMPNIGYGSNKK NWRKPRGIDNRVRRRFKGQILMPNIGYGSN GQILMPNIGYGSNKKTKHMLPSGFRKFLVH R F K K K T 0 0 2 0 0 1 0 3 0 2 1 3 1 1 1 1 0 0 1 0 0 0 17 2 1894.0135 P62910 P62910 49 65 RPL32 60S ribosomal protein L32 yes yes 3;4 0.0014761 74.141 By MS/MS 7 0 2 2 19011000 0 19011000 0 3739 1050 3895 15363;15364 12591;12592 12591 2 0 10916000 0 FKNELER KSTVVKAISGVHTVRFKNELERNITIKLGY ISGVHTVRFKNELERNITIKLGYANAKIYK R F K E R N 0 1 1 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 934.48723 P41091;Q2VIR3 P41091 69 75 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.016828 146.21 By MS/MS 4 0 1 1 5796900 0 0 5796900 3740 790 3896 15365 12593 12593 1 0 0 946820 FKQESTVATER RNRRIFGLLMGTLQKFKQESTVATERQKRR TLQKFKQESTVATERQKRRQEIEQKLEVQA K F K E R Q 1 1 0 0 0 1 2 0 0 0 0 1 0 1 0 1 2 0 0 1 0 0 11 1 1294.6517 Q9H307 Q9H307 156 166 PNN Pinin yes yes 3 0.0050135 83.182 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 17920000 0 9772900 8147500 3741 1978 3897 15366;15367;15368 12594;12595;12596 12594 3 0 4335000 1580200 FKVEESYDLK LQNMRETRVDLHLPRFKVEESYDLKDTLRT LHLPRFKVEESYDLKDTLRTMGMVDIFNGD R F K L K D 0 0 0 1 0 0 2 0 0 0 1 2 0 1 0 1 0 0 1 1 0 0 10 1 1256.6289 P29508 P29508 287 296 SERPINB3 Serpin B3 yes yes 2 0.044334 96.342 By MS/MS 9 0.816 1 1 1 3 11078000 11078000 0 0 3742 700 3898 15369;15370;15371 12597 12597 1 9553400 0 0 FKVEESYDLKDTLR LQNMRETRVDLHLPRFKVEESYDLKDTLRT RFKVEESYDLKDTLRTMGMVDIFNGDADLS R F K L R T 0 1 0 2 0 0 2 0 0 0 2 2 0 1 0 1 1 0 1 1 0 0 14 2 1741.8887 P29508 P29508 287 300 SERPINB3 Serpin B3 yes yes 3 0.0013699 89.541 By MS/MS 9 0.816 1 1 1 3 12453000 12453000 0 0 3743 700 3899 15372;15373;15374 12598 12598 1 10922000 0 0 FLAAGTHLGGTNLDFQMEQYIYK GALDVLQMKEEDVLKFLAAGTHLGGTNLDF GGTNLDFQMEQYIYKRKSDGIYIINLKRTW K F L Y K R 2 0 1 1 0 2 1 3 1 1 3 1 1 2 0 0 2 0 2 0 0 0 23 0 2616.2683 P08865 P08865 18 40 RPSA 40S ribosomal protein SA yes yes 3 0.00031944 64.87 By MS/MS 5 0 1 1 9763800 0 0 9763800 3744 480 3900 15375 12599 12599 1 0 0 1361900 FLADQQSEIDGLK ELNKLPKSVQNKLEKFLADQQSEIDGLKGR EKFLADQQSEIDGLKGRHEKFKVESEQQYF K F L L K G 1 0 0 2 0 2 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 13 0 1462.7304 P12270 P12270 28 40 TPR Nucleoprotein TPR yes yes 2 0.041095 71.524 By MS/MS 1 0 1 1 8412100 0 0 8412100 3745 536 3901 15376 12600 12600 1 0 0 1812500 FLAFESNIGDLASILK SGSLPPEKSGEIWARFLAFESNIGDLASIL LAFESNIGDLASILKVEKRRFTAFKEEYEG R F L L K V 2 0 1 1 0 0 1 1 0 2 3 1 0 2 0 2 0 0 0 0 0 0 16 0 1736.9349 Q12996 Q12996 488 503 CSTF3 Cleavage stimulation factor subunit 3 yes yes 2 0.001467 92.856 By MS/MS 3 0 1 1 9503300 0 0 9503300 3746 1214 3902 15377 12601 12601 1 0 0 1843200 FLALYLHGAA EPVGPVGFKPETFRKFLALYLHGAA_____ ETFRKFLALYLHGAA_______________ K F L A A - 3 0 0 0 0 0 0 1 1 0 3 0 0 1 0 0 0 0 1 0 0 0 10 0 1074.5862 Q9BZE1 Q9BZE1 414 423 MRPL37 39S ribosomal protein L37, mitochondrial yes yes 2 0.03545 76.592 By MS/MS 5 0 1 1 2899400 0 2899400 0 3747 1940 3903 15378 12602 12602 1 0 747380 0 FLANVSTVLTSK LPSDFTPAVHASLDKFLANVSTVLTSKYR_ LDKFLANVSTVLTSKYR_____________ K F L S K Y 1 0 1 0 0 0 0 0 0 0 2 1 0 1 0 2 2 0 0 2 0 0 12 0 1278.7184 CON__P01966 CON__P01966 129 140 yes yes 2 2.1074E-08 171.85 By MS/MS By MS/MS By MS/MS 6.85 2.39 1 3 2 2 3 3 3 3 6 7 7 1618300000 190900000 116420000 1311000000 + 3748 34 3904 15379;15380;15381;15382;15383;15384;15385;15386;15387;15388;15389;15390;15391;15392;15393;15394;15395;15396;15397;15398 12603;12604;12605;12606;12607;12608;12609;12610;12611;12612;12613;12614;12615;12616;12617;12618;12619;12620 12614 18 180680000 152940000 477950000 FLASDLDQK TKKTKKHLPEPVAIKFLASDLDQKMKSISL EPVAIKFLASDLDQKMKSISLASCHQLHSK K F L Q K M 1 0 0 2 0 1 0 0 0 0 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1035.5237 O75691 O75691 2520 2528 UTP20 Small subunit processome component 20 homolog yes yes 2 0.065712 67.494 By MS/MS 2 0.816 1 1 1 3 19823000 0 0 19823000 3749 280 3905 15399;15400;15401 12621 12621 1 0 0 4318800 FLASVSTVLTSK LPAEFTPAVHASLDKFLASVSTVLTSKYR_ LDKFLASVSTVLTSKYR_____________ K F L S K Y 1 0 0 0 0 0 0 0 0 0 2 1 0 1 0 3 2 0 0 2 0 0 12 0 1251.7075 P69905 P69905 129 140 HBA1 Hemoglobin subunit alpha yes yes 2 6.1607E-05 143.89 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 62769000 62769000 0 0 3750 1082 3906 15402;15403;15404;15405;15406;15407;15408;15409;15410;15411 12622;12623;12624;12625;12626;12627 12627 6 65201000 0 0 FLATPPNGNFADAVFR LSMPVDEEVESLHLRFLATPPNGNFADAVF LATPPNGNFADAVFRFNANISYSGVLHAVT R F L F R F 3 1 2 1 0 0 0 1 0 0 1 0 0 3 2 0 1 0 0 1 0 0 16 0 1735.8682 O75165 O75165 361 376 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 6.0218E-05 109.72 By matching By MS/MS 1 0 2 1 1 2894300 621920 2272400 0 3751 245 3907 15412;15413 12628 12628 1 621920 1110700 0 FLAVGLVDNTVR CMSLANVPPGEQRSRFLAVGLVDNTVRIIS RSRFLAVGLVDNTVRIISLDPSDCLQPLSM R F L V R I 1 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 3 0 0 12 0 1302.7296 Q15393 Q15393 604 615 SF3B3 Splicing factor 3B subunit 3 yes yes 2 4.859E-05 146.68 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 77712000 0 27841000 49871000 3752 1361 3908 15414;15415;15416;15417;15418;15419;15420 12629;12630;12631;12632;12633 12631 5 0 12261000 10858000 FLDELDAVQMD LVSEAIKVLMGKCRRFLDELDAVQMD____ KCRRFLDELDAVQMD_______________ R F L M D - 1 0 0 3 0 1 1 0 0 0 2 0 1 1 0 0 0 0 0 1 0 0 11 0 1294.5751 O15160 O15160 336 346 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes yes 2 0.019048 84.743 By MS/MS 5 0 1 1 2965900 2965900 0 0 3753 171 3909 15421 12634 12634 1 2376100 0 0 FLDGIYVSEK LIQQATTVKNKDIRKFLDGIYVSEKGTVQQ KDIRKFLDGIYVSEKGTVQQADE_______ K F L E K G 0 0 0 1 0 0 1 1 0 1 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1169.5968 Q5IFJ7;P32969 Q5IFJ7 175 184 RPL9 60S ribosomal protein L9 yes no 2 0.00033429 138.98 By MS/MS By MS/MS 6.75 0.433 1 3 2 2 346030000 0 58101000 287930000 3754 729 3910 15422;15423;15424;15425 12635;12636 12636 2 0 32891000 51091000 FLDPNTLER WHKLSELEPGTGDLRFLDPNTLERLTYHQL GTGDLRFLDPNTLERLTYHQLLERCVRAPG R F L E R L 0 1 1 1 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 9 0 1103.5611 P58107 P58107 200 208 EPPK1 Epiplakin yes yes 2 0.00045749 123.72 By MS/MS 1 0 1 1 9415600 0 9415600 0 3755 958 3911 15426 12637 12637 1 0 4602200 0 FLDQNLQK RLARDANSENCNKNKFLDQNLQKYQAECSQ ENCNKNKFLDQNLQKYQAECSQFKAKLASL K F L Q K Y 0 0 1 1 0 2 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5291 P15924 P15924 1057 1064 DSP Desmoplakin yes yes 2 5.1097E-07 163.34 By MS/MS By MS/MS By MS/MS 5.15 3.3 3 1 1 1 1 1 1 1 1 2 10 1 2 281150000 191050000 32167000 57928000 3756 572 3912 15427;15428;15429;15430;15431;15432;15433;15434;15435;15436;15437;15438;15439 12638;12639;12640;12641;12642;12643;12644;12645 12638 8 206040000 15723000 21524000 FLDQSLGEQVVK MKSISLASCHQLHSKFLDQSLGEQVVKNLL HSKFLDQSLGEQVVKNLLFAAKVLYLLELY K F L V K N 0 0 0 1 0 2 1 1 0 0 2 1 0 1 0 1 0 0 0 2 0 0 12 0 1361.7191 O75691 O75691 2544 2555 UTP20 Small subunit processome component 20 homolog yes yes 2 0.018807 85.533 By MS/MS 1 0 1 1 5573000 0 5573000 0 3757 280 3913 15440 12646 12646 1 0 2724000 0 FLEEFITPIVK INFIHHNWPSLLRHRFLEEFITPIVKVSKN LRHRFLEEFITPIVKVSKNKQEMAFYSLPE R F L V K V 0 0 0 0 0 0 2 0 0 2 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1334.7486 P11388 P11388 569 579 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.145E-05 149.72 By MS/MS By MS/MS 1.67 0.745 3 2 1 2 4 233170000 0 33080000 200090000 3758 524 3914 15441;15442;15443;15444;15445;15446 12647;12648;12649;12650;12651 12649 5 0 15400000 43380000 FLEEYLSSTPQR ______________________________ ISRFLEEYLSSTPQRLKLLDAYLLYILLTG R F L Q R L 0 1 0 0 0 1 2 0 0 0 2 0 0 1 1 2 1 0 1 0 0 0 12 0 1468.7198 P61803 P61803 12 23 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 2 2.2976E-25 200.6 By MS/MS By MS/MS 10 0 2 1 1 31943000 0 14646000 17296000 3759 998 3915 15447;15448 12652;12653 12653 2 0 74097000 37829000 FLEFQYLTGGLVDPEVHGR EAVKEKWLPYEAGQRFLEFQYLTGGLVDPE QYLTGGLVDPEVHGRISTEEAIRKGFIDGR R F L G R I 0 1 0 1 0 1 2 3 1 0 3 0 0 2 1 0 1 0 1 2 0 0 19 0 2176.0953 P15924 P15924 2726 2744 DSP Desmoplakin yes yes 2;3 1.0932E-09 130.11 By matching By MS/MS 1.25 0.433 3 1 1 3 29097000 0 887930 28209000 3760 572 3916 15449;15450;15451;15452 12654;12655;12656 12654 3 0 434010 6151500 FLELLPK ANSAVVLSAVKVLMKFLELLPKDSDYYNML SAVKVLMKFLELLPKDSDYYNMLLKKLAPP K F L P K D 0 0 0 0 0 0 1 0 0 0 3 1 0 1 1 0 0 0 0 0 0 0 7 0 858.52149 P63010 P63010 266 272 AP2B1 AP-2 complex subunit beta yes yes 2 0.044859 78.616 By MS/MS 2 0 1 1 4759000 0 0 4759000 3761 1057 3917 15453 12657 12657 1 0 0 1075400 FLENEDRR LQHLENELTHDIITKFLENEDRRSASLHLP THDIITKFLENEDRRSASLHLPKLSITGTY K F L R R S 0 2 1 1 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 1 1077.5203 P01009 P01009 299 306 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.0023796 116.88 By MS/MS 9 0 1 1 4498400 4498400 0 0 3762 367 3918 15454 12658;12659 12658 2 2525000 0 0 FLEPTLR EIQTVNKQFPCEPFKFLEPTLRLEYCEALA QFPCEPFKFLEPTLRLEYCEALAMLREAGV K F L L R L 0 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 7 0 874.49125 P14868 P14868 339 345 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 0.019765 102.98 By MS/MS 4 0 1 1 9488800 0 0 9488800 3763 566 3919 15455 12660 12660 1 0 0 1549800 FLEQQNK QELNDRFANYIDKVRFLEQQNKILLAELEQ ANYIDKVRFLEQQNKILLAELEQLKGQGKS R F L N K I 0 0 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 0 905.46068 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;CON__Q61726;CON__O43790;CON__Q6NT21;CON__P78385;CON__Q14533;CON__P78386;O43790;P78385;Q14533;P78386;P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9DCV7;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;P08670;P14136;Q01546 P08670 123 129 KRT78;KRT86;KRT83;KRT81;KRT85;KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT84;VIM;GFAP;KRT76 Keratin, type II cytoskeletal 78;Keratin, type II cuticular Hb6;Keratin, type II cuticular Hb3;Keratin, type II cuticular Hb1;Keratin, type II cuticular Hb5;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cuticular Hb4;Vimentin;Glial fibrillary acidic protein;Keratin, type II cytoskeletal 2 oral no no 2 0.024814 97.071 By MS/MS By MS/MS By matching 5 2.56 2 1 1 2 3 2 2 1 1 5 7 3 258690000 179810000 68853000 10019000 + 3764 476;49;68;37;47;58;69;71;1135;54;94;92 3920 15456;15457;15458;15459;15460;15461;15462;15463;15464;15465;15466;15467;15468;15469;15470 12661;12662;12663;12664;12665;12666;12667;12668;12669;12670;12671;12672;12673;12674 12661 13 195960000 21745000 1780100 FLEQQNQVLETK KVLNNKFASFIDKVRFLEQQNQVLETKWEL KVRFLEQQNQVLETKWELLQQLDLNNCKNN R F L T K W 0 0 1 0 0 3 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1475.762 CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7;CON__Q3SY84;Q3SY84 CON__Q32MB2 152 163 KRT73;KRT74;KRT71 Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71 no no 2 7.7515E-48 227.94 By MS/MS By MS/MS By MS/MS 5.27 2.82 8 5 6 9 6 7 8 5 3 7 33 8 23 1849900000 1338800000 40231000 470890000 + 3765 80 3921 15471;15472;15473;15474;15475;15476;15477;15478;15479;15480;15481;15482;15483;15484;15485;15486;15487;15488;15489;15490;15491;15492;15493;15494;15495;15496;15497;15498;15499;15500;15501;15502;15503;15504;15505;15506;15507;15508;15509;15510;15511;15512;15513;15514;15515;15516;15517;15518;15519;15520;15521;15522;15523;15524;15525;15526;15527;15528;15529;15530;15531;15532;15533;15534 12675;12676;12677;12678;12679;12680;12681;12682;12683;12684;12685;12686;12687;12688;12689;12690;12691;12692;12693;12694;12695;12696;12697;12698;12699;12700;12701;12702;12703;12704;12705;12706;12707;12708;12709;12710;12711;12712;12713;12714;12715;12716;12717;12718;12719;12720;12721;12722;12723;12724;12725;12726;12727;12728;12729;12730 12694 56 1317200000 29303000 158870000 FLEQQNQVLQTK KTLNNKFASFIDKVRFLEQQNQVLQTKWEL KVRFLEQQNQVLQTKWELLQQMNVGTRPIN R F L T K W 0 0 1 0 0 4 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 12 0 1474.778 P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908;CON__Q7Z794;Q7Z794 CON__P35908 204 215 KRT1;KRT2;KRT77 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 2;3 9.3083E-89 250.16 By MS/MS By MS/MS By MS/MS 5.34 2.9 8 5 4 6 5 6 7 5 5 5 21 18 17 64182000000 43885000000 3554700000 16742000000 + 3766 65;66;413;95 3922 15535;15536;15537;15538;15539;15540;15541;15542;15543;15544;15545;15546;15547;15548;15549;15550;15551;15552;15553;15554;15555;15556;15557;15558;15559;15560;15561;15562;15563;15564;15565;15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590 12731;12732;12733;12734;12735;12736;12737;12738;12739;12740;12741;12742;12743;12744;12745;12746;12747;12748;12749;12750;12751;12752;12753;12754;12755;12756;12757;12758;12759;12760;12761;12762;12763;12764;12765;12766;12767;12768;12769;12770;12771;12772;12773;12774;12775;12776;12777;12778;12779;12780;12781;12782;12783;12784;12785;12786;12787;12788;12789;12790;12791;12792;12793;12794;12795;12796;12797;12798;12799;12800;12801;12802;12803;12804;12805;12806;12807;12808;12809;12810;12811;12812;12813;12814;12815;12816;12817;12818;12819;12820;12821 12764 91 46701000000 2909000000 6694600000 FLEQQNQVLQTKWELLQQVDTSTR KSLNNQFASFIDKVRFLEQQNQVLQTKWEL QTKWELLQQVDTSTRTHNLEPYFESFINNL R F L T R T 0 1 1 1 0 6 2 0 0 0 4 1 0 1 0 1 3 1 0 2 0 0 24 1 2931.509 P04264;CON__P04264 P04264 200 223 KRT1 Keratin, type II cytoskeletal 1 yes no 3 4.2359E-25 164.66 By MS/MS By MS/MS By MS/MS 4.5 3.1 1 2 1 1 1 3 2 1 45915000 24808000 15882000 5225500 + 3767 413 3923 15591;15592;15593;15594;15595;15596 12822;12823;12824;12825;12826 12825 5 18040000 7214200 1180900 FLEQQNQVLR KTLNNKFASFIDKVRFLEQQNQVLRTKWEL IDKVRFLEQQNQVLRTKWELLQQLDVGSRT R F L L R T 0 1 1 0 0 3 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 10 0 1273.6779 CON__Q3TTY5 CON__Q3TTY5 219 228 yes yes 2 8.3788E-14 173.23 By MS/MS 7.4 3.38 1 1 1 2 5 27164000 27164000 0 0 + 3768 86 3924 15597;15598;15599;15600;15601 12827;12828;12829;12830 12830 3 28875000 0 0 FLEQSMDIEDLK EYVPPKPKPSRVKEKFLEQSMDIEDLKYCS KEKFLEQSMDIEDLKYCSEHSVNEHEDGDG K F L L K Y 0 0 0 2 0 1 2 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 12 0 1466.6963 O95239;Q2VIQ3 O95239 1034 1045 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0013367 114.4 By MS/MS 1.5 0.5 1 1 2 14458000 0 0 14458000 3769 314 3925 15602;15603 12831;12832 12832 2 0 0 3223400 FLESLPEEEQQR KCDQKKKDYEVELLRFLESLPEEEQQRVLG LLRFLESLPEEEQQRVLGEEKMLNINKKQA R F L Q R V 0 1 0 0 0 2 4 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1503.7205 P17480 P17480 361 372 UBTF Nucleolar transcription factor 1 yes yes 2 5.2261E-10 155.42 By MS/MS 1.5 0.5 1 1 2 16137000 0 16137000 0 3770 584 3926 15604;15605 12833;12834 12833 2 0 7266700 0 FLESTDSFNNELKR ELLQIEERHQEKKRKFLESTDSFNNELKRL KFLESTDSFNNELKRLCGLKVEVDMEKIAA K F L K R L 0 1 2 1 0 0 2 0 0 0 2 1 0 2 0 2 1 0 0 0 0 0 14 1 1698.8213 Q969G3 Q969G3 259 272 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 2;3 1.6625E-07 172.56 By matching By MS/MS 3.67 0.471 1 2 1 2 36529000 4101300 0 32428000 3771 1741 3927 15606;15607;15608 12835;12836 12836 2 4732000 0 5296600 FLESVEGNQNYPLLLLTLLEK KTLDPDPAIRRPAEKFLESVEGNQNYPLLL GNQNYPLLLLTLLEKSQDNVIKVCASVTFK K F L E K S 0 0 2 0 0 1 3 1 0 0 7 1 0 1 1 1 1 0 1 1 0 0 21 0 2432.3203 P55060 P55060 32 52 CSE1L Exportin-2 yes yes 3 0.00022485 68.401 By MS/MS 2 0 1 1 7638200 0 0 7638200 3772 935 3928 15609 12837 12837 1 0 0 1726100 FLEVQYLTGGLIEPDTPGR QALKKGWLYYEAGQRFLEVQYLTGGLIEPD QYLTGGLIEPDTPGRVPLDEALQRGTVDAR R F L G R V 0 1 0 1 0 1 2 3 0 1 3 0 0 1 2 0 2 0 1 1 0 0 19 0 2104.0841 Q15149 Q15149 4524 4542 PLEC Plectin yes yes 2;3 5.9077E-09 132.47 By MS/MS By MS/MS 1 0 2 1 1 7332800 0 817840 6515000 3773 1348 3929 15610;15611 12838;12839 12838 2 0 399750 1403800 FLFEGQR ESYCQRQGVPMNSLRFLFEGQRIADNHTPK GVPMNSLRFLFEGQRIADNHTPKELGMEEE R F L Q R I 0 1 0 0 0 1 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 7 0 895.4552 P63165;G2XKQ0 P63165 64 70 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier yes no 2 0.040085 83.287 By MS/MS 3 0 1 1 5663000 0 0 5663000 3774 1061 3930 15612 12840 12840 1 0 0 1098400 FLFENQTPAHVYYR EAMIMNREINNPMFRFLFENQTPAHVYYRW RFLFENQTPAHVYYRWKLYSILQGDSPTKW R F L Y R W 1 1 1 0 0 1 1 0 1 0 1 0 0 2 1 0 1 0 2 1 0 0 14 0 1783.8682 O15042 O15042 461 474 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2;3 5.0995E-17 185.77 By MS/MS By MS/MS 2.11 0.994 3 3 2 1 3 6 68742000 0 14269000 54473000 3775 163 3931 15613;15614;15615;15616;15617;15618;15619;15620;15621 12841;12842;12843;12844;12845 12844 5 0 6448900 11908000 FLFSLFGQK IQTMCPIEGEGNIARFLFSLFGQKHNAVNA EGNIARFLFSLFGQKHNAVNATLIDSWVDI R F L Q K H 0 0 0 0 0 1 0 1 0 0 2 1 0 3 0 1 0 0 0 0 0 0 9 0 1085.591 Q13155 Q13155 216 224 AIMP2 Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 yes yes 2 9.5367E-05 143.11 By matching By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 19091000 488280 3740200 14862000 3776 1226 3932 15622;15623;15624;15625 12846;12847 12846 2 650150 1294700 2259800 FLGDRDFNQLSSR ENDDKPEGLSPNVNRFLGDRDFNQLSSRDK NRFLGDRDFNQLSSRDKDLSMARFTYEYSR R F L S R D 0 2 1 2 0 1 0 1 0 0 2 0 0 2 0 2 0 0 0 0 0 0 13 1 1553.7587 CON__Q3SZ57 CON__Q3SZ57 334 346 yes yes 3 0.0025149 87.18 By MS/MS By matching 3 0 2 1 1 8412200 5140200 0 3271900 + 3777 83 3933 15626;15627 12848 12848 1 5930700 0 634600 FLGELYNYR VNQPKFNQRRISSAKFLGELYNYRMVESAV RISSAKFLGELYNYRMVESAVIFRTLYSFT K F L Y R M 0 1 1 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 2 0 0 0 9 0 1173.5819 Q9HAU5 Q9HAU5 874 882 UPF2 Regulator of nonsense transcripts 2 yes yes 2 0.021571 81.191 By MS/MS 1.5 0.5 1 1 2 6449100 0 0 6449100 3778 2003 3934 15628;15629 12849 12849 1 0 0 1428000 FLGGDMEHTHLVK KSAAEKRRQLIQESKFLGGDMEHTHLVKGL SKFLGGDMEHTHLVKGLDFALLQKVRAEIA K F L V K G 0 0 0 1 0 0 1 2 2 0 2 1 1 1 0 0 1 0 0 1 0 0 13 0 1482.7289 Q13123 Q13123 152 164 IK Protein Red yes yes 3 0.025135 55.314 By MS/MS 3 1.41 1 1 1 1 1 5 37237000 0 0 37237000 3779 1222 3935 15630;15631;15632;15633;15634 12850 12850 1 0 0 7069200 FLGTEVLLR SEEQAMKAERLNRRRFLGTEVLLRLISEAQ RLNRRRFLGTEVLLRLISEAQIQEFGVNFS R F L L R L 0 1 0 0 0 0 1 1 0 0 3 0 0 1 0 0 1 0 0 1 0 0 9 0 1046.6124 Q8IXT5 Q8IXT5 465 473 RBM12B RNA-binding protein 12B yes yes 2 0.0022538 104.75 By MS/MS 2 0 1 1 9123000 0 9123000 0 3780 1587 3936 15635 12851 12851 1 0 4108200 0 FLHDNMVEIPNR NDVSLMDRPLCERRKFLHDNMVEIPNRIMF RRKFLHDNMVEIPNRIMFSEMKRVTKALDL K F L N R I 0 1 2 1 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 12 0 1483.7242 P49916 P49916 616 627 LIG3 DNA ligase 3 yes yes 3 0.0047868 80.69 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 25724000 0 6549400 19174000 3781 874 3937 15636;15637;15638 12852;12853 12853 2 0 2949300 4304100 FLHHLIIEEK RKPSDSVHITNDDERFLHHLIIEEKEKDSF NDDERFLHHLIIEEKEKDSFTAVVITGVQP R F L E K E 0 0 0 0 0 0 2 0 2 2 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1277.7132 A6NHR9 A6NHR9 305 314 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2;3 6.474E-09 118.33 By MS/MS 1.33 0.471 2 1 3 26221000 0 0 26221000 3782 15 3938 15639;15640;15641 12854;12855;12856 12855 3 0 0 5698300 FLHSEALLAVAQNR LMCEINVMEAVRDIRFLHSEALLAVAQNRW RFLHSEALLAVAQNRWLHIYDNQGIELHCI R F L N R W 3 1 1 0 0 1 1 0 1 0 3 0 0 1 0 1 0 0 0 1 0 0 14 0 1567.8471 O15213 O15213 244 257 WDR46 WD repeat-containing protein 46 yes yes 3 7.2828E-05 127.17 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 33173000 0 13565000 19608000 3783 173 3939 15642;15643;15644 12857;12858 12858 2 0 5782700 3719800 FLIATGERPR ATNNKGKEKIYSAERFLIATGERPRYLGIP YSAERFLIATGERPRYLGIPGDKEYCISSD R F L P R Y 1 2 0 0 0 0 1 1 0 1 1 0 0 1 1 0 1 0 0 0 0 0 10 1 1158.6509 Q16881 Q16881 307 316 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes yes 2 0.055688 93.162 By MS/MS 4 0 1 1 2363500 0 2363500 0 3784 1402 3940 15645 12859 12859 1 0 784350 0 FLIIPLHSLMPTVNQTQVFK LHDLLMSQVMFKSDKFLIIPLHSLMPTVNQ LHSLMPTVNQTQVFKRTPPGVRKIVIATNI K F L F K R 0 0 1 0 0 2 0 0 1 2 3 1 1 2 2 1 2 0 0 2 0 0 20 0 2325.2919 Q9H2U1 Q9H2U1 519 538 DHX36 ATP-dependent RNA helicase DHX36 yes yes 3 0.0016176 58.848 By MS/MS By matching 2.5 0.5 1 1 1 1 3475800 0 1572900 1903000 3785 1976 3941 15646;15647 12860 12860 1 0 708290 369080 FLILGDIDGLMDEFSK RVLEENQEHYHIVQKFLILGDIDGLMDEFS LILGDIDGLMDEFSKWLSKSRNNLPGHLLR K F L S K W 0 0 0 3 0 0 1 2 0 2 3 1 1 2 0 1 0 0 0 0 0 0 16 0 1811.9015 P57740 P57740 518 533 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 3.5565E-05 123.64 By MS/MS 2 0 2 2 15408000 0 0 15408000 3786 956 3942 15648;15649 12861;12862 12861 2 0 0 3481800 FLILLGSPK FLSVTIDANLATDPRFLILLGSPKLRTLAR LATDPRFLILLGSPKLRTLARGLSPAYLRF R F L P K L 0 0 0 0 0 0 0 1 0 1 3 1 0 1 1 1 0 0 0 0 0 0 9 0 986.61645 Q9Y251 Q9Y251 71 79 HPSE Heparanase;Heparanase 8 kDa subunit;Heparanase 50 kDa subunit yes yes 2 0.00065852 133.55 By matching By MS/MS By MS/MS 10 0 3 1 1 1 10272000 268120 2143100 7861200 3787 2232 3943 15650;15651;15652 12863;12864 12864 2 488460 10842000 17193000 FLILPDMLK VAQLEQVYIRGSKIRFLILPDMLKNAPMLK RGSKIRFLILPDMLKNAPMLKSMKNKNQGS R F L L K N 0 0 0 1 0 0 0 0 0 1 3 1 1 1 1 0 0 0 0 0 0 0 9 0 1088.6304 P62318 P62318 70 78 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 0.0056357 95.909 By MS/MS By MS/MS By MS/MS 8.6 1.28 1 1 2 3 3 2 2 6 611470000 10370000 96774000 504330000 3788 1024 3944;3945 15653;15654;15655;15656;15657;15658;15659;15660;15661;15662 12865;12866;12867;12868;12869;12870;12871 12870 7 6087300 53547000 115350000 FLIPNASQAESK ELRDICNDVLSLLEKFLIPNASQAESKVFY LEKFLIPNASQAESKVFYLKMKGDYYRYLA K F L S K V 2 0 1 0 0 1 1 0 0 1 1 1 0 1 1 2 0 0 0 0 0 0 12 0 1303.6772 P63104 P63104 104 115 YWHAZ 14-3-3 protein zeta/delta yes yes 2 0.00049179 125.97 By MS/MS By MS/MS By MS/MS 7 0.632 1 3 1 1 2 2 183680000 16290000 80124000 87264000 3789 1059 3946 15663;15664;15665;15666;15667 12872;12873;12874;12875 12873 4 35108000 41918000 15399000 FLIQNVLR DVLKDVLLPWYNAYRFLIQNVLRLQKEEEI PWYNAYRFLIQNVLRLQKEEEIEFLYNENT R F L L R L 0 1 1 0 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1001.6022 P41252 P41252 662 669 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 2 0.0001697 142.11 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 21429000 0 7164600 14264000 3790 796 3947 15668;15669;15670;15671 12876;12877 12877 2 0 3226300 3147700 FLLDHQGELFPSPDPSGL AITLKAINPINTFTKFLLDHQGELFPSPDP DHQGELFPSPDPSGL_______________ K F L G L - 0 0 0 2 0 1 1 2 1 0 4 0 0 2 3 2 0 0 0 0 0 0 18 0 1967.9629 Q07960 Q07960 422 439 ARHGAP1 Rho GTPase-activating protein 1 yes yes 2 1.9144E-22 186.46 By MS/MS 4 0 1 1 4516200 4516200 0 0 3791 1180 3948 15672 12878 12878 1 3523400 0 0 FLLEHFTDEQR LKGKSNKERRMKIYKFLLEHFTDEQRFNIT KIYKFLLEHFTDEQRFNITSKICLSILACF K F L Q R F 0 1 0 1 0 1 2 0 1 0 2 0 0 2 0 0 1 0 0 0 0 0 11 0 1433.6939 P42695 P42695 1102 1112 NCAPD3 Condensin-2 complex subunit D3 yes yes 3 0.072831 36.284 By MS/MS 1.5 0.5 1 1 2 5884600 0 0 5884600 3792 806 3949 15673;15674 12879 12879 1 0 0 1300400 FLLGYQPR FIPYFICACKELPGKFLLGYQPRGKPRIEY CKELPGKFLLGYQPRGKPRIEYVTVTPEGF K F L P R G 0 1 0 0 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 8 0 992.54435 Q7KZ85 Q7KZ85 1472 1479 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.025152 80.294 By MS/MS 1 0 1 1 5617900 0 0 5617900 3793 1517 3950 15675 12880 12880 1 0 0 1210500 FLLHEPIVNK GSTAARTFYLIKDIRFLLHEPIVNKFREYK IKDIRFLLHEPIVNKFREYKVFVRKLRKAY R F L N K F 0 0 1 0 0 0 1 0 1 1 2 1 0 1 1 0 0 0 0 1 0 0 10 0 1208.6917 O00541 O00541 72 81 PES1 Pescadillo homolog yes yes 2;3 0.00021042 120.87 By MS/MS By MS/MS 2.8 0.4 1 4 2 3 86684000 0 30010000 56674000 3794 127 3951 15676;15677;15678;15679;15680 12881;12882;12883;12884 12882 4 0 12793000 11058000 FLLHQETLPEQLLAEK DMLQEKIEEMAEQERFLLHQETLPEQLLAE LLHQETLPEQLLAEKQLNLSAMPVLTAPQL R F L E K Q 1 0 0 0 0 2 3 0 1 0 5 1 0 1 1 0 1 0 0 0 0 0 16 0 1908.0357 Q8WUM0 Q8WUM0 1001 1016 NUP133 Nuclear pore complex protein Nup133 yes yes 2;3 4.7742E-05 145.81 By MS/MS 1.67 0.471 1 2 3 43302000 0 0 43302000 3795 1675 3952 15681;15682;15683 12885;12886 12886 2 0 0 9748500 FLLLQGLVEK IYLPVIGQSPVVDKKFLLLQGLVEKEIDYQ VVDKKFLLLQGLVEKEIDYQRELLETLGMM K F L E K E 0 0 0 0 0 1 1 1 0 0 4 1 0 1 0 0 0 0 0 1 0 0 10 0 1158.7012 Q8TED0 Q8TED0 463 472 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.00044539 117.89 By MS/MS 4 0 1 1 9177400 0 9177400 0 3796 1665 3953 15684 12887 12887 1 0 3045600 0 FLLSDQSLLLLPEYHQR LRERMQIQKEMERLRFLLSDQSLLLLPEYH LSDQSLLLLPEYHQRVEVLRTLGYVDEAGT R F L Q R V 0 1 0 1 0 2 1 0 1 0 6 0 0 1 1 2 0 0 1 0 0 0 17 0 2071.1102 Q15477 Q15477 1042 1058 SKIV2L Helicase SKI2W yes yes 3 0.00042427 85.473 By MS/MS 2 0 1 1 3069300 0 0 3069300 3797 1371 3954 15685 12888 12888 1 0 0 693600 FLMSLVNQVPK DVLSGKVSADNTVGRFLMSLVNQVPKIVPD TVGRFLMSLVNQVPKIVPDDFETMLNSNIN R F L P K I 0 0 1 0 0 1 0 0 0 0 2 1 1 1 1 1 0 0 0 2 0 0 11 0 1274.7057 O00303 O00303 307 317 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.012906 88.177 By MS/MS 5 0 1 1 14996000 0 14996000 0 3798 118 3955 15686 12889 12889 1 0 3865600 0 FLMYGSKPQIAEIIR VELSKAKYSRNIVKKFLMYGSKPQIAEIIR FLMYGSKPQIAEIIRSFKGHVRKMLRHAEA K F L I R S 1 1 0 0 0 1 1 1 0 3 1 1 1 1 1 1 0 0 1 0 0 0 15 1 1764.9597 Q15397 Q15397 222 236 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 3 0.0018393 78.069 By MS/MS 3 0 1 1 19031000 0 19031000 0 3799 1362 3956 15687 12890 12890 1 0 8112800 0 FLNEFFLNVK DYSSNTMESALQYEKFLNEFFLNVKDILRA LQYEKFLNEFFLNVKDILRAPVDITGQFEK K F L V K D 0 0 2 0 0 0 1 0 0 0 2 1 0 3 0 0 0 0 0 1 0 0 10 0 1269.6758 P49589 P49589 458 467 CARS Cysteine--tRNA ligase, cytoplasmic yes yes 2 0.0044435 99.136 By MS/MS 3 0 1 1 4196600 0 0 4196600 3800 858 3957 15688 12891 12891 1 0 0 813940 FLNPAVVAPDAFDIVAMAAGGALAAPQR DSEVYKVVGNLLYYRFLNPAVVAPDAFDIV IVAMAAGGALAAPQRHALGAVAQLLQHAAA R F L Q R H 9 1 1 2 0 1 0 2 0 1 2 0 1 2 3 0 0 0 0 3 0 0 28 0 2752.4371 Q86VI3 Q86VI3 1179 1206 IQGAP3 Ras GTPase-activating-like protein IQGAP3 yes yes 3 1.6505E-06 58.418 By MS/MS 1 0 1 1 3547800 0 0 3547800 3801 1552 3958 15689 12892 12892 1 0 0 764430 FLNWIPLGYIFETK QNAPLVHATLETLLRFLNWIPLGYIFETKL RFLNWIPLGYIFETKLISTLIYKFLNVPMF R F L T K L 0 0 1 0 0 0 1 1 0 2 2 1 0 2 1 0 1 1 1 0 0 0 14 0 1739.9287 O14980 O14980 232 245 XPO1 Exportin-1 yes yes 2 0.018949 74.962 By MS/MS 2 0 1 1 3787600 0 0 3787600 3802 158 3959 15690 12893 12893 1 0 0 855930 FLPAVSDENSK RKARKQKGAETELVRFLPAVSDENSKRLSS ELVRFLPAVSDENSKRLSSRARKRAAKRRL R F L S K R 1 0 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 11 0 1205.5928 P46087 P46087 31 41 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.003954 98.055 By MS/MS 2 0 1 1 0 0 0 0 3803 824 3960 15691 12894 12894 1 0 0 0 FLPAVSDENSKR RKARKQKGAETELVRFLPAVSDENSKRLSS LVRFLPAVSDENSKRLSSRARKRAAKRRLG R F L K R L 1 1 1 1 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 12 1 1361.6939 P46087 P46087 31 42 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2;3 3.4089E-05 132.17 By MS/MS By MS/MS 1.86 0.639 2 4 1 2 5 62260000 0 20147000 42113000 3804 824 3961 15692;15693;15694;15695;15696;15697;15698 12895;12896;12897;12898;12899 12896 5 0 9072300 9114600 FLPLFDR ______________________________ MAGQAFRKFLPLFDRVLVERSAAETVTKGG K F L D R V 0 1 0 1 0 0 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 7 0 906.49634 P61604 P61604 9 15 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 2 0.030389 92.319 By MS/MS By MS/MS 9.5 0.5 1 1 1 1 7682400 0 2569600 5112800 3805 996 3962 15699;15700 12900;12901 12901 2 0 13000000 1633200 FLPRPPGEK QKFYIDPYKLLPLQRFLPRPPGEKGPPRGG LLPLQRFLPRPPGEKGPPRGGGRGGRGGGR R F L E K G 0 1 0 0 0 0 1 1 0 0 1 1 0 1 3 0 0 0 0 0 0 0 9 1 1039.5815 Q9NY12 Q9NY12 157 165 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.017994 104.44 By matching By MS/MS By MS/MS 6.67 0.471 1 2 1 1 1 50521000 1674300 14009000 34837000 3806 2093 3963 15701;15702;15703 12902;12903 12902 2 2229400 8044200 6181700 FLQALADGSSR TSQQWRLKVLVRLSKFLQALADGSSRLRES RLSKFLQALADGSSRLRESEGLQEQKENPH K F L S R L 2 1 0 1 0 1 0 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 11 0 1163.5935 Q9NXF1 Q9NXF1 234 244 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.0011567 112.75 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 15587000 0 6528900 9057900 3807 2089 3964 15704;15705 12904;12905 12904 2 0 2940100 1756800 FLQDYFDGNLKR VMQEEFSRDGKALERFLQDYFDGNLKRYLK LERFLQDYFDGNLKRYLKSEPIPESNDGPV R F L K R Y 0 1 1 2 0 1 0 1 0 0 2 1 0 2 0 0 0 0 1 0 0 0 12 1 1514.7518 P30101 P30101 352 363 PDIA3 Protein disulfide-isomerase A3 yes yes 3 0.00024358 113.69 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 17906000 0 7931300 9975000 3808 711 3965 15706;15707;15708 12906;12907 12906 2 0 2632100 1569700 FLQEEAEK ENRALILRDKDNTQRFLQEEAEKMKQVAEE DKDNTQRFLQEEAEKMKQVAEEAARLSVAA R F L E K M 1 0 0 0 0 1 3 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 992.48148 Q15149 Q15149 2402 2409 PLEC Plectin yes yes 2 0.021347 83.265 By MS/MS 1 0 1 1 7052500 0 7052500 0 3809 1348 3966 15709 12908 12908 1 0 3447200 0 FLQEHGSDSFLAEHK EQLRSEQLPKKDIIKFLQEHGSDSFLAEHK FLQEHGSDSFLAEHKLLGNIKNVAKTANKD K F L H K L 1 0 0 1 0 1 2 1 2 0 2 1 0 2 0 2 0 0 0 0 0 0 15 0 1743.8216 Q00688 Q00688 28 42 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2;3;4 1.6409E-107 263.7 By matching By MS/MS 6.33 0.471 4 2 1 5 148340000 0 11825000 136520000 3810 1126 3967 15710;15711;15712;15713;15714;15715 12909;12910;12911;12912 12910 4 0 4093500 21308000 FLQGDSFLNEDLNQLIK FNPPVESSNPKIKGKFLQGDSFLNEDLNQL QGDSFLNEDLNQLIKRYSSEVATESPLDFT K F L I K R 0 0 2 2 0 2 1 1 0 1 4 1 0 2 0 1 0 0 0 0 0 0 17 0 1993.0157 Q8WTT2 Q8WTT2 761 777 NOC3L Nucleolar complex protein 3 homolog yes yes 2;3 1.765E-09 171.62 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 19394000 0 2154400 17240000 3811 1670 3968 15716;15717;15718;15719 12913;12914;12915 12914 3 0 970170 3611200 FLQGFMAPK FGECVIALQASVIKKFLQGFMAPKQKRRKL ASVIKKFLQGFMAPKQKRRKLQSEDSAKTE K F L P K Q 1 0 0 0 0 1 0 1 0 0 1 1 1 2 1 0 0 0 0 0 0 0 9 0 1037.5368 Q9UIG0 Q9UIG0 1108 1116 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.058001 69.198 By MS/MS 1 0 1 1 15985000 0 0 15985000 3812 2164 3969 15720 12916 12916 1 0 0 3444200 FLQQEQSVFR RRRMKLRDLMEAAFKFLQQEQSVFRELWDW EAAFKFLQQEQSVFRELWDWSVCVPLLRSH K F L F R E 0 1 0 0 0 3 1 0 0 0 1 0 0 2 0 1 0 0 0 1 0 0 10 0 1280.6513 Q9NU22 Q9NU22 155 164 MDN1 Midasin yes yes 2 0.00013341 144.12 By MS/MS 1.5 0.5 1 1 2 5143700 0 5143700 0 3813 2056 3970 15721;15722 12917 12917 1 0 2471400 0 FLSAIVSSVDKIPYGMR RLDSSIRNMRAVTDKFLSAIVSSVDKIPYG SAIVSSVDKIPYGMRFIAKVLKDSLHEKFP K F L M R F 1 1 0 1 0 0 0 1 0 2 1 1 1 1 1 3 0 0 1 2 0 0 17 1 1882.0023 P46940 P46940 1145 1161 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 0.00048266 86.641 By MS/MS By MS/MS 2 0 2 1 1 5759700 0 3102200 2657500 3814 835 3971 15723;15724 12918;12919 12919 2 0 1397000 600550 FLSEMLK ARYIELLTRSGDYYRFLSEMLKSLEDLKLK TRSGDYYRFLSEMLKSLEDLKLKNTKIEVL R F L L K S 0 0 0 0 0 0 1 0 0 0 2 1 1 1 0 1 0 0 0 0 0 0 7 0 866.45718 P15924 P15924 1016 1022 DSP Desmoplakin yes yes 2 0.021479 99.919 By MS/MS By MS/MS By MS/MS 5 3.3 3 1 1 1 1 1 2 1 4 1 6 124800000 58729000 17047000 49025000 3815 572 3972 15725;15726;15727;15728;15729;15730;15731;15732;15733;15734;15735 12920;12921;12922;12923;12924;12925 12921 6 48078000 8332100 17999000 FLSNGHVTIPGQQDK HLKTDLLLEPYNKYRFLSNGHVTIPGQQDK FLSNGHVTIPGQQDKDMFQETMEAMRIMGI R F L D K D 0 0 1 1 0 2 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 0 15 0 1639.8318 P35579 P35579 302 316 MYH9 Myosin-9 yes yes 2;3 5.1639E-51 166.04 By MS/MS 1 0 2 2 28972000 0 28972000 0 3816 752 3973 15736;15737 12926;12927 12927 2 0 14161000 0 FLSNGYIPIPGQQDK HLKSDLLLEGFNNYRFLSNGYIPIPGQQDK FLSNGYIPIPGQQDKDNFQETMEAMHIMGF R F L D K D 0 0 1 1 0 2 0 2 0 2 1 1 0 1 2 1 0 0 1 0 0 0 15 0 1675.857 P35580 P35580 309 323 MYH10 Myosin-10 yes yes 2 0.00073122 99.752 By MS/MS By MS/MS 1 0 2 1 1 25912000 0 17684000 8227900 3817 753 3974 15738;15739 12928;12929 12929 2 0 8643700 1772800 FLSPEFIPR PVIVDKHRPVEPERRFLSPEFIPRRGRTDP VEPERRFLSPEFIPRRGRTDPLKFQIERKD R F L P R R 0 1 0 0 0 0 1 0 0 1 1 0 0 2 2 1 0 0 0 0 0 0 9 0 1104.5968 P49406 P49406 75 83 MRPL19 39S ribosomal protein L19, mitochondrial yes yes 2 0.029874 77.318 By MS/MS By MS/MS 6 0 2 1 1 20227000 0 3544800 16682000 3818 855 3975 15740;15741 12930;12931 12931 2 0 1227100 2495800 FLSPPALQGYVAWLR NQGLPVTPTFWRVVRFLSPPALQGYVAWLR FLSPPALQGYVAWLRAMFLQPDLDSLVDFS R F L L R A 2 1 0 0 0 1 0 1 0 0 3 0 0 1 2 1 0 1 1 1 0 0 15 0 1716.9352 Q9BQG0 Q9BQG0 397 411 MYBBP1A Myb-binding protein 1A yes yes 2;3 1.4758E-11 178.84 By MS/MS By MS/MS 2 0.707 2 4 2 2 6 18924000 0 7262100 11662000 3819 1885 3976 15742;15743;15744;15745;15746;15747;15748;15749 12932;12933;12934;12935;12936 12935 5 0 3270200 2495000 FLSQPFQVAEVFTGHMGK EEDKLTVSRARKIQRFLSQPFQVAEVFTGH QPFQVAEVFTGHMGKLVPLKETIKGFQQIL R F L G K L 1 0 0 0 0 2 1 2 1 0 1 1 1 3 1 1 1 0 0 2 0 0 18 0 2022.0033 P06576 P06576 463 480 ATP5B ATP synthase subunit beta, mitochondrial yes yes 3 3.696E-05 98.227 By matching By MS/MS By MS/MS 4.67 0.745 3 2 1 1 3 2 35521000 3072200 9470200 22978000 3820 444 3977 15750;15751;15752;15753;15754;15755 12937;12938;12939 12938 3 2396900 2767100 3602200 FLTDGMLLR TVRFDDVTSEDTRIKFLTDGMLLREAISDS EDTRIKFLTDGMLLREAISDSLLRKYSCVI K F L L R E 0 1 0 1 0 0 0 1 0 0 3 0 1 1 0 0 1 0 0 0 0 0 9 0 1064.5689 Q9H6R0 Q9H6R0 169 177 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 2 0.00057182 116.9 By MS/MS By MS/MS 3 0 2 1 1 8979800 0 2563300 6416500 3821 1987 3978 15756;15757 12940;12941 12940 2 0 1092700 1244500 FLTDTSHLLSAVK RQWQDFTTSVENLFRFLTDTSHLLSAVKGQ FRFLTDTSHLLSAVKGQERFSLYQTRSLIH R F L V K G 1 0 0 1 0 0 0 0 1 0 3 1 0 1 0 2 2 0 0 1 0 0 13 0 1430.7769 Q8WXH0 Q8WXH0 5715 5727 SYNE2 Nesprin-2 yes yes 3 0.021415 57.136 By MS/MS 1 0 1 1 1802800 0 1802800 0 3822 1696 3979 15758 12942 12942 1 0 881160 0 FLTFAER MKTKPVSHKTENTYRFLTFAERLGNVNIDI HKTENTYRFLTFAERLGNVNIDIIHRIDRT R F L E R L 1 1 0 0 0 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 7 0 882.45995 O75691 O75691 16 22 UTP20 Small subunit processome component 20 homolog yes yes 2 0.020487 101.69 By MS/MS 1 0 1 1 2338100 0 2338100 0 3823 280 3980 15759 12943 12943 1 0 1142800 0 FLTLPPVLHLQLMR DAGEHGLQEAEKGVKFLTLPPVLHLQLMRF KFLTLPPVLHLQLMRFMYDPQTDQNIKIND K F L M R F 0 1 0 0 0 1 0 0 1 0 5 0 1 1 2 0 1 0 0 1 0 0 14 0 1676.98 Q93009 Q93009 395 408 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2;3 0.00014349 125.56 By MS/MS By MS/MS 2.33 0.943 1 3 1 1 2 4 41630000 0 24056000 17573000 3824 1738 3981 15760;15761;15762;15763;15764;15765 12944;12945;12946;12947;12948 12944 5 0 10833000 3782500 FLTNGPSSSPGQER QLKADLLLEPCSHYRFLTNGPSSSPGQERE RFLTNGPSSSPGQERELFQETLESLRVLGF R F L E R E 0 1 1 0 0 1 1 2 0 0 1 0 0 1 2 3 1 0 0 0 0 0 14 0 1475.7005 Q7Z406 Q7Z406 329 342 MYH14 Myosin-14 yes yes 2 4.3932E-07 165.11 By MS/MS 1 0 1 1 8290500 0 8290500 0 3825 1531 3982 15766 12949 12949 1 0 4052300 0 FLTVMMK KRQVLIRPCSKVIVRFLTVMMKHGYIGEFE PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA R F L M K H 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 0 1 0 0 1 0 0 7 0 868.45507 P62244 P62244 37 43 RPS15A 40S ribosomal protein S15a yes yes 2 0.022101 99.384 By MS/MS By MS/MS 9 0 2 1 1 136430000 0 54732000 81700000 3826 1009 3983 15767;15768 12950;12951 12950 2 0 43827000 26098000 FLTWILNR YGTCPHGGYGLGLERFLTWILNRYHIRDVC YGLGLERFLTWILNRYHIRDVCLYPRFVQR R F L N R Y 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 0 1 1 0 0 0 0 8 0 1061.6022 O43776 O43776 523 530 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 9.2146E-08 163.84 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 3 5 73154000 0 19183000 53971000 3827 211 3984 15769;15770;15771;15772;15773;15774;15775;15776 12952;12953;12954;12955;12956;12957 12953 6 0 6637300 9813400 FLTYFPGR FGALLSDQGFDLMNKFLTYFPGRRISAEDG GFDLMNKFLTYFPGRRISAEDGLKHEYFRE K F L G R R 0 1 0 0 0 0 0 1 0 0 1 0 0 2 1 0 1 0 1 0 0 0 8 0 999.5178 P21127;Q9UQ88 P21127 703 710 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 0.001143 119.89 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 23156000 2242700 3379400 17534000 3828 620 3985 15777;15778;15779;15780 12958;12959;12960 12958 3 2702100 1521800 3746200 FLVEAPHDWDLEEVMNSIR DRECKHKADSLDCSRFLVEAPHDWDLEEVM APHDWDLEEVMNSIRDCFVTGKWEDDKDAA R F L I R D 1 1 1 2 0 0 3 0 1 1 2 0 1 1 1 1 0 1 0 2 0 0 19 0 2299.0943 Q14692 Q14692 737 755 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 1.2307E-23 188.04 By MS/MS 2 0 1 1 1438800 0 0 1438800 3829 1315 3986 15781 12961 12961 1 0 0 325150 FLVGFTNK LFVKGEDFPANNIVKFLVGFTNKGTEDFIV PANNIVKFLVGFTNKGTEDFIVESLDASFR K F L N K G 0 0 1 0 0 0 0 1 0 0 1 1 0 2 0 0 1 0 0 1 0 0 8 0 924.5069 P43307 P43307 103 110 SSR1 Translocon-associated protein subunit alpha yes yes 2 0.002548 108.09 By matching By MS/MS 6 0 2 1 1 17510000 0 5604800 11906000 3830 814 3987 15782;15783 12962 12962 1 0 1940200 1781200 FLVHNVK SNKKTKHMLPSGFRKFLVHNVKELEVLLMC MLPSGFRKFLVHNVKELEVLLMCNKSYCAE K F L V K E 0 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 0 0 2 0 0 7 0 855.49667 P62910 P62910 77 83 RPL32 60S ribosomal protein L32 yes yes 2 0.04232 81.1 By MS/MS 7 0 1 1 19187000 0 19187000 0 3831 1050 3988 15784 12963 12963 1 0 11017000 0 FLVLDEADGLLSQGYSDFINR DDLVSTGKLNLSQVRFLVLDEADGLLSQGY ADGLLSQGYSDFINRMHNQIPQVTSDGKRL R F L N R M 1 1 1 3 0 1 1 2 0 1 4 0 0 2 0 2 0 0 1 1 0 0 21 0 2371.1696 Q92499 Q92499 366 386 DDX1 ATP-dependent RNA helicase DDX1 yes yes 3 2.0164E-14 147.1 By MS/MS 2 0.816 1 1 1 3 11613000 0 0 11613000 3832 1705 3989 15785;15786;15787 12964 12964 1 0 0 2566800 FLVLPSLGR IPTCMGFGVHQDKYRFLVLPSLGRSLQSAL HQDKYRFLVLPSLGRSLQSALDVSPKHVLS R F L G R S 0 1 0 0 0 0 0 1 0 0 3 0 0 1 1 1 0 0 0 1 0 0 9 0 1000.607 Q8IV63 Q8IV63 256 264 VRK3 Inactive serine/threonine-protein kinase VRK3 yes yes 2 0.00049767 136.16 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 7737700 0 2590600 5147100 3833 1569 3990 15788;15789;15790 12965;12966 12966 2 0 859730 803860 FLVPDHVNMSELIK RYKGEKQLPVLDKTKFLVPDHVNMSELIKI KFLVPDHVNMSELIKIIRRRLQLNANQAFF K F L I K I 0 0 1 1 0 0 1 0 1 1 2 1 1 1 1 1 0 0 0 2 0 0 14 0 1640.8596 A6NCE7;Q9GZQ8 A6NCE7 52 65 MAP1LC3B2;MAP1LC3B Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3B yes no 2;3 0.00066613 108.56 By matching By MS/MS 8.25 0.433 3 1 1 3 55024000 0 2441100 52583000 3834 11 3991 15791;15792;15793;15794 12967;12968;12969 12967 3 0 1110600 10387000 FLVQNIHTLAELK LYMWLSNSPHGPSAKFLVQNIHTLAELKMT AKFLVQNIHTLAELKMTGNCLKGSRPLLSF K F L L K M 1 0 1 0 0 1 1 0 1 1 3 1 0 1 0 0 1 0 0 1 0 0 13 0 1524.8664 Q8TDN6 Q8TDN6 141 153 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 0.00029259 144.89 By matching By MS/MS 5.6 0.8 3 1 1 1 4 114180000 848040 0 113340000 3835 1663 3992 15795;15796;15797;15798;15799 12970;12971;12972;12973 12972 4 679390 0 16213000 FLVSQNVDGLHVR THMALVQLERVGLLRFLVSQNVDGLHVRSG LRFLVSQNVDGLHVRSGFPRDKLAELHGNM R F L V R S 0 1 1 1 0 1 0 1 1 0 2 0 0 1 0 1 0 0 0 3 0 0 13 0 1482.7943 Q8N6T7 Q8N6T7 109 121 SIRT6 NAD-dependent protein deacetylase sirtuin-6 yes yes 3 5.3071E-05 130.56 By MS/MS 5 0 1 1 10157000 0 0 10157000 3836 1613 3993 15800 12974 12974 1 0 0 1416700 FLWGSSQAK NLLEQSSNSTSWFWRFLWGSSQAKLVCRIK TSWFWRFLWGSSQAKLVCRIKEDYKWEFEE R F L A K L 1 0 0 0 0 1 0 1 0 0 1 1 0 1 0 2 0 1 0 0 0 0 9 0 1022.5185 P03246;P03247 P03246 30 38 yes no 2 0.050444 71.379 By MS/MS 10 0 1 1 3297100 0 3297100 0 3837 407 3994 15801 12975 12975 1 0 16681000 0 FLWSLPQSDLLR CEALQQGGNLDRLARFLWSLPQSDLLRGNE LARFLWSLPQSDLLRGNESLLKARALVAFH R F L L R G 0 1 0 1 0 1 0 0 0 0 4 0 0 1 1 2 0 1 0 0 0 0 12 0 1473.798 Q9UIU6 Q9UIU6 132 143 SIX4 Homeobox protein SIX4 yes yes 2 0.0064271 100.02 By MS/MS 4.5 1.12 1 1 1 1 4 6799300 0 0 6799300 3838 2167 3995 15802;15803;15804;15805 12976;12977;12978 12976 3 0 0 1176800 FLYDDNQR LARLLFPPKDDHTLKFLYDDNQRVEPEWYI KDDHTLKFLYDDNQRVEPEWYIPIIPMVLI K F L Q R V 0 1 1 2 0 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 1069.4829 P11388;Q02880 P11388 828 835 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.0010881 120.65 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 127690000 0 21769000 105920000 3839 524;1150 3996 15806;15807;15808 12979;12980;12981 12981 3 0 10640000 22822000 FLYIWPNAR GAGNYGMCGRAYSPRFLYIWPNARISVMGG RAYSPRFLYIWPNARISVMGGEQAANVLAT R F L A R I 1 1 1 0 0 0 0 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 9 0 1178.6237 Q9HCC0 Q9HCC0 461 469 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes yes 2 0.011196 88.029 By MS/MS 4 0 1 1 2842100 0 2842100 0 3840 2009 3997 15809 12982 12982 1 0 943180 0 FLYQLHETEKEDLIR ERIMGKMEADPELSKFLYQLHETEKEDLIR FLYQLHETEKEDLIREERSRRERVRQSRMD K F L I R E 0 1 0 1 0 1 3 0 1 1 3 1 0 1 0 0 1 0 1 0 0 0 15 1 1932.9945 O75643 O75643 359 373 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3;4 0.008797 73.156 By MS/MS 1 0 2 2 55273000 0 0 55273000 3841 277 3998 15810;15811 12983;12984 12984 0 0 0 11909000 FLYQLHETEKEDLIREER ERIMGKMEADPELSKFLYQLHETEKEDLIR QLHETEKEDLIREERSRRERVRQSRMDTDL K F L E R S 0 2 0 1 0 1 5 0 1 1 3 1 0 1 0 0 1 0 1 0 0 0 18 2 2347.1808 O75643 O75643 359 376 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3;5 4.9659E-23 188.04 By MS/MS 1 0 2 2 28444000 0 0 28444000 3842 277 3999 15812;15813 12985;12986 12985 2 0 0 6128700 FMDASALTGIPLPLIK KLYLVFEFLHQDLKKFMDASALTGIPLPLI MDASALTGIPLPLIKSYLFQLLQGLAFCHS K F M I K S 2 0 0 1 0 0 0 1 0 2 3 1 1 1 2 1 1 0 0 0 0 0 16 0 1685.9426 P24941 P24941 90 105 CDK2 Cyclin-dependent kinase 2 yes yes 2 0.02324 63.537 By MS/MS By matching 6 0 2 1 1 2525500 0 1865300 660130 3843 654 4000 15814;15815 12987 12987 1 0 645720 98762 FMDMFPDASLIR AVHDVLDLYLWLSYRFMDMFPDASLIRDLQ SYRFMDMFPDASLIRDLQKELDGIIQDGVH R F M I R D 1 1 0 2 0 0 0 0 0 1 1 0 2 2 1 1 0 0 0 0 0 0 12 0 1441.6734 Q8IYB8 Q8IYB8 645 656 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.010021 94.297 By MS/MS 3 0 1 1 6422600 0 0 6422600 3844 1592 4001 15816 12988 12988 1 0 0 1245700 FMDSVIFTLYNYASNQR LAKLIFQMPQNKSTKFMDSVIFTLYNYASN DSVIFTLYNYASNQREEYLLLRLFKTALQE K F M Q R E 1 1 2 1 0 1 0 0 0 1 1 0 1 2 0 2 1 0 2 1 0 0 17 0 2067.9724 P46940 P46940 1001 1017 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 6.0389E-48 221.8 By MS/MS 2 0 1 1 6701400 0 0 6701400 3845 835 4002 15817 12989 12989 1 0 0 1514400 FMELLEPLNER STDEVDSKRLTVQTKFMELLEPLNERKHNL VQTKFMELLEPLNERKHNLLASKEIHQFNR K F M E R K 0 1 1 0 0 0 3 0 0 0 3 0 1 1 1 0 0 0 0 0 0 0 11 0 1389.6962 Q01082 Q01082 1467 1477 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00012369 140.16 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 28467000 0 4519600 23948000 3846 1128 4003 15818;15819;15820 12990;12991 12991 2 0 2209100 5188000 FMEPYIFGSR DARVHLGHKAGCRHRFMEPYIFGSRLDHDI GCRHRFMEPYIFGSRLDHDIIDLEQTATHL R F M S R L 0 1 0 0 0 0 1 1 0 1 0 0 1 2 1 1 0 0 1 0 0 0 10 0 1245.5852 Q9Y399 Q9Y399 101 110 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 2 5.34E-07 157.68 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 13353000 0 2911000 10442000 3847 2260 4004 15821;15822 12992;12993 12993 2 0 1671500 1562300 FMEQVIFK PIRHGIVEDWDLMERFMEQVIFKYLRAEPE DWDLMERFMEQVIFKYLRAEPEDHYFLLTE R F M F K Y 0 0 0 0 0 1 1 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 8 0 1040.5365 P61158 P61158 92 99 ACTR3 Actin-related protein 3 yes yes 2 0.041319 75.109 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 41052000 0 25664000 15387000 3848 980 4005 15823;15824;15825 12994;12995 12994 2 0 6682400 2146300 FMETATESLAK PDCPSTSPYDLSNPRFMETATESLAKYNSE SNPRFMETATESLAKYNSESPSKQYSLVKI R F M A K Y 2 0 0 0 0 0 2 0 0 0 1 1 1 1 0 1 2 0 0 0 0 0 11 0 1226.5853 CON__Q58D62 CON__Q58D62 168 178 yes yes 2 0.00080981 116.3 By MS/MS By MS/MS By matching 5.83 2.03 2 1 2 1 3 2 1 66311000 42488000 18206000 5615900 + 3849 89 4006 15826;15827;15828;15829;15830;15831 12996;12997;12998 12998 2 35466000 49311000 840190 FMFNIADGGFTELHSLWQNEER KDLNDEKQKKNIKQRFMFNIADGGFTELHS GGFTELHSLWQNEERAATVTKKTYEIWHRR R F M E R A 1 1 2 1 0 1 3 2 1 1 2 0 1 3 0 1 1 1 0 0 0 0 22 0 2640.2067 Q14839 Q14839 1696 1717 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 5.5969E-21 151.87 By MS/MS 1.5 0.5 1 1 2 3647100 0 0 3647100 3850 1321 4007 15832;15833 12999;13000 12999 2 0 0 806330 FMGTELNGK QATASMKDGKWERKKFMGTELNGKTLGILG KWERKKFMGTELNGKTLGILGLGRIGREVA K F M G K T 0 0 1 0 0 0 1 2 0 0 1 1 1 1 0 0 1 0 0 0 0 0 9 0 995.47462 O43175 O43175 138 146 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.060825 68.383 By MS/MS 4 0 1 1 4295600 0 4295600 0 3851 190 4008 15834 13001 13001 1 0 1425600 0 FMLQDVLDLR MEKIIKEKKTSSRIRFMLQDVLDLRGSNWV SSRIRFMLQDVLDLRGSNWVPRRGDQGPKT R F M L R G 0 1 0 2 0 1 0 0 0 0 3 0 1 1 0 0 0 0 0 1 0 0 10 0 1248.6536 Q04637 Q04637 977 986 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 2 0.00039764 118.5 By MS/MS 4 0 1 1 2828600 0 0 2828600 3852 1159 4009 15835 13002 13002 1 0 0 462000 FMNPFNMPNLYQK KEGLQNMEARLAERKFMNPFNMPNLYQKLE RKFMNPFNMPNLYQKLESDPRTRTLLSDPT K F M Q K L 0 0 3 0 0 1 0 0 0 0 1 1 2 2 2 0 0 0 1 0 0 0 13 0 1642.7636 P31948 P31948 124 136 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0010798 113.71 By matching By MS/MS 3.67 0.471 1 2 1 2 7768300 2956800 4811500 0 3853 726 4010 15836;15837;15838 13003;13004 13003 2 2306800 1729900 0 FMQAVTGWK LDFTELDVAAEKIDRFMQAVTGWKTGCSLM AEKIDRFMQAVTGWKTGCSLMGASVDSTLA R F M W K T 1 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 0 1 0 0 9 0 1066.527 P01019 P01019 254 262 AGT Angiotensinogen;Angiotensin-1;Angiotensin-2;Angiotensin-3;Angiotensin-4;Angiotensin 1-9;Angiotensin 1-7;Angiotensin 1-5;Angiotensin 1-4 yes yes 2 0.002059 105.57 By MS/MS 9 0 1 1 4196100 4196100 0 0 3854 369 4011 15839 13005 13005 1 2355300 0 0 FMQDPMEIFVDDETK FSATLSKEIRPVCRKFMQDPMEIFVDDETK FMQDPMEIFVDDETKLTLHGLQQYYVKLKD K F M T K L 0 0 0 3 0 1 2 0 0 1 0 1 2 2 1 0 1 0 0 1 0 0 15 0 1843.8008 Q13838 Q13838 242 256 DDX39B Spliceosome RNA helicase DDX39B yes yes 2 0.00054409 107.97 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 12610000 1778300 0 10831000 3855 1271 4012 15840;15841;15842 13006;13007;13008 13008 3 1424700 0 1680200 FMQTFVLAPEGSVANK QVMGLLSNNNQALRRFMQTFVLAPEGSVAN MQTFVLAPEGSVANKFYVHNDIFRYQDEVF R F M N K F 2 0 1 0 0 1 1 1 0 0 1 1 1 2 1 1 1 0 0 2 0 0 16 0 1737.876 Q13283 Q13283 108 123 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 9.4086E-06 155.02 By matching By MS/MS By MS/MS 4.73 1.53 3 6 2 1 2 1 1 7 7 199470000 5147100 49060000 145260000 3856 1236 4013;4014 15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855;15856;15857 13009;13010;13011;13012;13013;13014;13015;13016;13017;13018;13019;13020;13021 13015 577 13 4015700 17876000 25403000 FMQTFVLAPEGSVPNK QVMGLLSNSGQPERKFMQTFVLAPEGSVPN MQTFVLAPEGSVPNKFYVHNDMFRYEDEVF K F M N K F 1 0 1 0 0 1 1 1 0 0 1 1 1 2 2 1 1 0 0 2 0 0 16 0 1763.8916 Q9UN86 Q9UN86 108 123 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2 0.013675 69.451 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 33475000 0 25970000 7504900 3857 2203 4015;4016 15858;15859;15860 13022;13023;13024 13022 706 3 0 8618600 1455600 FMSVQRPGPYDRPGTAR SSQEEVRSYSDPPLKFMSVQRPGPYDRPGT SVQRPGPYDRPGTARRYIGIVKQAGLERMR K F M A R R 1 3 0 1 0 1 0 2 0 0 0 0 1 1 3 1 1 0 1 1 0 0 17 2 1933.9581 P52597 P52597 201 217 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3;4 1.969E-06 134.44 By MS/MS By MS/MS 5.05 1.4 1 2 4 6 4 4 10 11 908220000 0 351350000 556870000 3858 910 4017;4018 15861;15862;15863;15864;15865;15866;15867;15868;15869;15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880;15881 13025;13026;13027;13028;13029;13030;13031;13032;13033;13034;13035;13036;13037;13038;13039;13040 13033 448 16 0 100300000 80519000 FMTDPIR ISATLPHEILEMTNKFMTDPIRILVKRDEL EILEMTNKFMTDPIRILVKRDELTLEGIKQ K F M I R I 0 1 0 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 0 0 7 0 878.43202 P38919 P38919 232 238 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.0052405 127.66 By MS/MS By MS/MS 4.6 1.02 1 1 2 1 2 3 135580000 0 37743000 97840000 3859 775 4019 15882;15883;15884;15885;15886 13041;13042;13043;13044;13045 13044 5 0 10071000 14029000 FMTTAMYDAR SKPRKLVNTINPGARFMTTAMYDAREAIIP NPGARFMTTAMYDAREAIIPGSVYDRSSQG R F M A R E 2 1 0 1 0 0 0 0 0 0 0 0 2 1 0 0 2 0 1 0 0 0 10 0 1205.5209 Q92900 Q92900 940 949 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.055377 71.425 By MS/MS 2 0 1 1 6728600 0 6728600 0 3860 1729 4020 15887 13046 13046 1 0 3030000 0 FMYDPQTDQNIK KFLTLPPVLHLQLMRFMYDPQTDQNIKIND LMRFMYDPQTDQNIKINDRFEFPEQLPLDE R F M I K I 0 0 1 2 0 2 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 0 12 0 1498.6762 Q93009 Q93009 409 420 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.0001419 136.57 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 22904000 0 5962300 16942000 3861 1738 4021 15888;15889;15890;15891 13047;13048;13049 13047 3 0 2684900 3702600 FNADEFEDMVAEK GRQKIHISKKWGFTKFNADEFEDMVAEKRL TKFNADEFEDMVAEKRLIPDGCGVKYIPNR K F N E K R 2 0 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 13 0 1543.6501 P27635 P27635 176 188 RPL10 60S ribosomal protein L10 yes yes 2 0.00097546 115 By MS/MS By MS/MS 6.8 0.4 1 4 1 4 147670000 0 3066000 144600000 3862 678 4022;4023 15892;15893;15894;15895;15896 13050;13051;13052;13053;13054 13052 309 5 0 1760500 25321000 FNADEFEDMVAEKR GRQKIHISKKWGFTKFNADEFEDMVAEKRL KFNADEFEDMVAEKRLIPDGCGVKYIPNRG K F N K R L 2 1 1 2 0 0 3 0 0 0 0 1 1 2 0 0 0 0 0 1 0 0 14 1 1699.7512 P27635 P27635 176 189 RPL10 60S ribosomal protein L10 yes yes 2;3 7.1466E-07 165.78 By matching By MS/MS 7 0 4 2 2 36327000 0 2789000 33538000 3863 678 4024 15897;15898;15899;15900 13055;13056 13056 2 0 1601400 5951200 FNALFAQGNYSEAAK VRNNLAGAEELFARKFNALFAQGNYSEAAK FNALFAQGNYSEAAKVAANAPKGILRTPDT K F N A K V 4 0 2 0 0 1 1 1 0 0 1 1 0 2 0 1 0 0 1 0 0 0 15 0 1629.7787 Q00610 Q00610 368 382 CLTC Clathrin heavy chain 1 yes yes 2 9.4236E-12 109.72 By MS/MS 1 0 1 1 0 0 0 0 3864 1125 4025 15901 13057 13057 1 0 0 0 FNALITTYEILLK IREYEWIHSQTKRLKFNALITTYEILLKDK LKFNALITTYEILLKDKTVLGSINWAFLGV K F N L K D 1 0 1 0 0 0 1 0 0 2 3 1 0 1 0 0 2 0 1 0 0 0 13 0 1537.8756 O14647 O14647 589 601 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 2 0.040999 71.555 By MS/MS 1 0 1 1 3971300 0 0 3971300 3865 142 4026 15902 13058 13058 1 0 0 855680 FNAPGAQQFCFLLSTR DGGITGNMRQEAIDRFNAPGAQQFCFLLST NAPGAQQFCFLLSTRAGGLGINLATADTVI R F N T R A 2 1 1 0 1 2 0 1 0 0 2 0 0 3 1 1 1 0 0 0 0 0 16 0 1855.9039 Q14839;Q12873;Q8TDI0 Q14839 1112 1127 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2 3.3336E-05 132.14 By MS/MS 1 0 1 1 7172500 0 0 7172500 3866 1321;1662;1205 4027 15903 13059 13059 1 0 0 1545400 FNASQLITQR LPSIVNEVLKSVVAKFNASQLITQRAQVSL SVVAKFNASQLITQRAQVSLLIRRELTERA K F N Q R A 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 10 0 1176.6251 Q99623 Q99623 148 157 PHB2 Prohibitin-2 yes yes 2 0.00029657 139.74 By matching By MS/MS 6 0 2 1 1 33276000 5130700 0 28145000 3867 1855 4028 15904;15905 13060 13060 1 6831600 0 4210900 FNDILGR LYDYIDKYNIELDPRFNDILGRHSRKRWER YNIELDPRFNDILGRHSRKRWERFVHSENQ R F N G R H 0 1 1 1 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 833.43955 P68400;Q8NEV1 P68400 269 275 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.032281 90.706 By MS/MS 5 0 1 1 10049000 0 0 10049000 3868 1080 4029 15906 13061 13061 1 0 0 1401700 FNDSEGDDTEETEDYR EALDYFSDKESGKQKFNDSEGDDTEETEDY NDSEGDDTEETEDYRQFRKSVLADQGKSFA K F N Y R Q 0 1 1 4 0 0 4 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 16 0 1920.7133 Q9NYF8 Q9NYF8 394 409 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 1.2077E-108 262.93 By MS/MS 1.5 0.5 1 1 2 13307000 0 0 13307000 3869 2097 4030 15907;15908 13062 13062 1 0 0 2957000 FNEEHIPDSPFVVPVASPSGDAR AYVVQEPGDYEVSVKFNEEHIPDSPFVVPV SPFVVPVASPSGDARRLTVSSLQESGLKVN K F N A R R 2 1 1 2 0 0 2 1 1 1 0 0 0 2 4 3 0 0 0 3 0 0 23 0 2466.1816 P21333 P21333 2311 2333 FLNA Filamin-A yes yes 3 8.895E-10 94.389 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 21961000 0 6852600 15108000 3870 623 4031 15909;15910;15911 13063;13064 13064 2 0 3349500 3294000 FNEQIEPIYALLR ESAMPKKDARTLLARFNEQIEPIYALLRET ARFNEQIEPIYALLRETEDVNLAYEILEPE R F N L R E 1 1 1 0 0 1 2 0 0 2 2 0 0 1 1 0 0 0 1 0 0 0 13 0 1604.8562 P29083 P29083 180 192 GTF2E1 General transcription factor IIE subunit 1 yes yes 2 0.0011883 112.36 By MS/MS 5.67 1.25 1 1 1 3 6151100 0 0 6151100 3871 696 4032 15912;15913;15914 13065;13066 13065 2 0 0 988990 FNEVAAQYSEDKAR GKIMEAMEKLKSGMRFNEVAAQYSEDKARQ RFNEVAAQYSEDKARQGGDLGWMTRGSMVG R F N A R Q 3 1 1 1 0 1 2 0 0 0 0 1 0 1 0 1 0 0 1 1 0 0 14 1 1626.7638 Q9Y237 Q9Y237 64 77 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 3 0.0060216 71.344 By MS/MS 8.5 0.5 1 1 2 9133800 0 0 9133800 3872 2230 4033 15915;15916 13067 13067 1 0 0 1796100 FNEVVSVLK DGLVKVGTLKKRLDKFNEVVSVLKDGKPEM KKRLDKFNEVVSVLKDGKPEMNKQIKNLEI K F N L K D 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 0 3 0 0 9 0 1033.5808 Q9UM54 Q9UM54 853 861 MYO6 Unconventional myosin-VI yes yes 2 0.0038318 99.139 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 14069000 0 8815600 5253100 3873 2198 4034 15917;15918;15919 13068;13069 13068 2 0 4066000 1187100 FNFLAPELPAVSEFSTSETMGHSADR AKSMGQRLSLISKFRFNFLAPELPAVSEFS SEFSTSETMGHSADRLAAAFAVSRLEQDEY R F N D R L 3 1 1 1 0 0 3 1 1 0 2 0 1 3 2 4 2 0 0 1 0 0 26 0 2839.3123 P55084 P55084 204 229 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 3 1.9353E-08 82.342 By matching By MS/MS 4.33 0.471 2 1 1 2 13971000 2951000 0 11020000 3874 938 4035 15920;15921;15922 13070;13071 13070 2 2302300 0 1725500 FNFLNPNDPYHAYYR EFEARIRQNEINNPKFNFLNPNDPYHAYYR FNFLNPNDPYHAYYRHKVSEFKEGKAQEPS K F N Y R H 1 1 3 1 0 0 0 0 1 0 1 0 0 2 2 0 0 0 3 0 0 0 15 0 1929.8798 Q15459 Q15459 81 95 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 5.7998E-05 158.05 By MS/MS By MS/MS 2 0.577 1 4 1 2 4 53497000 0 11258000 42239000 3875 1369 4036 15923;15924;15925;15926;15927;15928 13072;13073;13074;13075 13075 4 0 5069800 9405200 FNLLAHLADDLGHVVPNSR PSNWQDISLEDSRLKFNLLAHLADDLGHVV AHLADDLGHVVPNSRLHQMCRVRDVLDFYN K F N S R L 2 1 2 2 0 0 0 1 2 0 4 0 0 1 1 1 0 0 0 2 0 0 19 0 2087.0912 Q8N5N7 Q8N5N7 98 116 MRPL50 39S ribosomal protein L50, mitochondrial yes yes 3 3.6334E-05 95.666 By MS/MS 8 0 1 1 3451800 0 0 3451800 3876 1609 4037 15929 13076 13076 1 0 0 529190 FNLTGLNEQVPHYR NEFFCEVDEDYIQDKFNLTGLNEQVPHYRQ KFNLTGLNEQVPHYRQALDMILDLEPDEEL K F N Y R Q 0 1 2 0 0 1 1 1 1 0 2 0 0 1 1 0 1 0 1 1 0 0 14 0 1686.8478 P67870 P67870 34 47 CSNK2B Casein kinase II subunit beta yes yes 2;3 0.00028468 150.1 By MS/MS By MS/MS 7 0 3 1 2 67191000 0 4482000 62709000 3877 1073 4038 15930;15931;15932 13077;13078;13079 13079 3 0 2573600 11127000 FNPFVTSDR ______________________________ ______________________________ K F N D R S 0 1 1 1 0 0 0 0 0 0 0 0 0 2 1 1 1 0 0 1 0 0 9 0 1081.5193 P61254;Q9UNX3 P61254 3 11 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 4.0123E-07 156.01 By matching By MS/MS By MS/MS 6.64 2.1 1 1 1 2 3 1 2 1 6 4 461310000 4087100 114540000 342680000 3878 989 4039 15933;15934;15935;15936;15937;15938;15939;15940;15941;15942;15943 13080;13081;13082;13083;13084;13085 13084 6 8808700 74915000 65438000 FNPSVFFLDFLVVPPSR NYLFSGMDDDGMESRFNPSVFFLDFLVVPP PSVFFLDFLVVPPSRYRPVSRLGDQMFTNG R F N S R Y 0 1 1 1 0 0 0 0 0 0 2 0 0 4 3 2 0 0 0 3 0 0 17 0 1980.0509 O95602 O95602 292 308 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.012361 50.608 By MS/MS 1 0 1 1 321400 0 0 321400 3879 330 4040 15944 13086 13086 1 0 0 69251 FNQLVEQYK QVSRKKAKGNKTETRFNQLVEQYKQKLLGP NKTETRFNQLVEQYKQKLLGPSKGAPLAKR R F N Y K Q 0 0 1 0 0 2 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1167.5924 Q9NW13 Q9NW13 730 738 RBM28 RNA-binding protein 28 yes yes 2 9.5771E-05 114.28 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 17395000 0 17395000 0 3880 2075 4041 15945;15946;15947;15948 13087;13088 13088 2 0 7270700 0 FNTANDDNVTQVR SALEHSIQYSGEVRRFNTANDDNVTQVRAF RRFNTANDDNVTQVRAFYVNVLNEEQRKRL R F N V R A 1 1 3 2 0 1 0 0 0 0 0 0 0 1 0 0 2 0 0 2 0 0 13 0 1492.6906 P04040 P04040 432 444 CAT Catalase yes yes 2 4.1826E-18 195.27 By MS/MS By matching 5.82 3.16 2 1 1 1 1 1 1 1 2 8 3 54295000 44802000 0 9492100 3881 408 4042 15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959 13089;13090;13091;13092;13093;13094;13095 13089 7 42094000 0 5323900 FNTTSVIK EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN QIFRPLKFNTTSVIKIAVEPVNPSELPKML K F N I K I 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 908.49673 Q15029 Q15029 582 589 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.041319 75.109 By MS/MS 2 0 1 1 16421000 0 0 16421000 3882 1335 4043 15960 13096 13096 1 0 0 3710900 FNVLQYVVPEVK QAPPTRIGLINDMVRFNVLQYVVPEVKDLY MVRFNVLQYVVPEVKDLYNWLEVEFNPLKL R F N V K D 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 0 0 0 1 4 0 0 12 0 1433.7919 Q14152 Q14152 377 388 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.070955 67.726 By MS/MS 3 0.816 1 1 1 3 7852100 0 7852100 0 3883 1286 4044 15961;15962;15963 13097 13097 1 0 3442600 0 FNVPVSLESK SEIPQTERMQKRAERFNVPVSLESKKAARA KRAERFNVPVSLESKKAARAARFGISSVPT R F N S K K 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 2 0 0 0 2 0 0 10 0 1118.5972 P82979 P82979 110 119 SARNP SAP domain-containing ribonucleoprotein yes yes 2 0.0081619 91.085 By matching By MS/MS 6 0 2 1 1 74840000 0 9228300 65612000 3884 1105 4045 15964;15965 13098 13098 1 0 3194500 9816300 FNVPVSLESKK SEIPQTERMQKRAERFNVPVSLESKKAARA RAERFNVPVSLESKKAARAARFGISSVPTK R F N K K A 0 0 1 0 0 0 1 0 0 0 1 2 0 1 1 2 0 0 0 2 0 0 11 1 1246.6921 P82979 P82979 110 120 SARNP SAP domain-containing ribonucleoprotein yes yes 2;3 0.027432 86.624 By MS/MS By matching 6 0 3 2 1 12133000 0 8934600 3198500 3885 1105 4046 15966;15967;15968 13099;13100 13099 2 0 3092900 478540 FNVTGTPEQYVPYSTTR TKPLTARKFIWTNHKFNVTGTPEQYVPYST VTGTPEQYVPYSTTRKKIQEWIPPSTPYK_ K F N T R K 0 1 1 0 0 1 1 1 0 0 0 0 0 1 2 1 4 0 2 2 0 0 17 0 1958.9374 Q9UI09 Q9UI09 115 131 NDUFA12 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 yes yes 2 0.00093764 93.959 By MS/MS 8 0 1 1 821990 0 821990 0 3886 2159 4047 15969 13101 13101 1 0 373970 0 FNVWDTAGQEK EVHPLVFHTNRGPIKFNVWDTAGQEKFGGL GPIKFNVWDTAGQEKFGGLRDGYYIQAQCA K F N E K F 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 0 1 1 0 1 0 0 11 0 1293.599 P62826 P62826 61 71 RAN GTP-binding nuclear protein Ran yes yes 2 6.1036E-61 238.51 By MS/MS By MS/MS By MS/MS 7.33 0.943 1 3 1 1 1 1 4 347430000 3506100 26297000 317630000 3887 1035 4048 15970;15971;15972;15973;15974;15975 13102;13103;13104;13105 13103 4 7556400 15100000 55621000 FNWYVDGVEVHNAK TCVVVDVSHEDPEVKFNWYVDGVEVHNAKT KFNWYVDGVEVHNAKTKPREEQYNSTYRVV K F N A K T 1 0 2 1 0 0 1 1 1 0 0 1 0 1 0 0 0 1 1 3 0 0 14 0 1676.7947 P0DOX5;P01857 P0DOX5 277 290 IGHG1 Ig gamma-1 chain C region yes no 2;3 1.0678E-11 182.28 By MS/MS 6.36 2.57 2 1 2 2 2 2 11 245820000 245820000 0 0 3888 381 4049 15976;15977;15978;15979;15980;15981;15982;15983;15984;15985;15986 13106;13107;13108;13109;13110;13111;13112;13113 13108 8 182460000 0 0 FNYSGSGGR SPGGGGGSDYNYESKFNYSGSGGRSGGNSY YNYESKFNYSGSGGRSGGNSYGSGGASYNP K F N G R S 0 1 1 0 0 0 0 3 0 0 0 0 0 1 0 2 0 0 1 0 0 0 9 0 943.41479 Q12906 Q12906 807 815 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.013023 96.111 By MS/MS 2.5 0.5 1 1 2 5707700 0 5707700 0 3889 1211 4050 15987;15988 13114 13114 0 0 2556000 0 FPAVGEPNIQQYAQNMGLPQNR NILKRVPNSVLWLLRFPAVGEPNIQQYAQN NIQQYAQNMGLPQNRIIFSPVAPKEEHVRR R F P N R I 2 1 3 0 0 4 1 2 0 1 1 0 1 1 3 0 0 0 1 1 0 0 22 0 2471.2016 O15294 O15294 878 899 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 3 1.7002E-09 94.057 By MS/MS 2 0 1 1 3016600 0 3016600 0 3890 175 4051 15989 13115 13115 1 0 1358400 0 FPDENFK TRGDGTGGKSIYGERFPDENFKLKHYGPGW GKSIYGERFPDENFKLKHYGPGWVSMANAG R F P F K L 0 0 1 1 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 7 0 895.40758 P23284 P23284 123 129 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.016333 109.11 By matching By MS/MS 7 0 2 1 1 29092000 0 4846700 24245000 3891 640 4052 15990;15991 13116 13116 1 0 2783000 4302100 FPDENFTLK TNHNGTGGKSIYGSRFPDENFTLKHVGPGV SIYGSRFPDENFTLKHVGPGVLSMANAGPN R F P L K H 0 0 1 1 0 0 1 0 0 0 1 1 0 2 1 0 1 0 0 0 0 0 9 0 1109.5393 P30405 P30405 125 133 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 2 0.0029715 101.72 By MS/MS By MS/MS 7 0 4 2 2 34226000 0 9210400 25016000 3892 713 4053 15992;15993;15994;15995 13117;13118;13119;13120;13121;13122;13123;13124 13118 8 0 5288700 4438900 FPEVEDVVMVNVR ______________________________ HKFPEVEDVVMVNVRSIAEMGAYVSLLEYN K F P V R S 0 1 1 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 5 0 0 13 0 1531.7705 P05198 P05198 13 25 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 1.6096E-07 170.47 By MS/MS 6 0 1 1 8174200 0 0 8174200 3893 428 4054 15996 13125 13125 1 0 0 1222900 FPGQLNADLR HLVSATMSGVTTCLRFPGQLNADLRKLAVN TTCLRFPGQLNADLRKLAVNMVPFPRLHFF R F P L R K 1 1 1 1 0 1 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1129.588 P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;P04350;Q13509;Q3ZCM7;Q9BUF5 P68371 242 251 TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 2 3.8494E-22 186.54 By matching By MS/MS By MS/MS 4.25 2.51 4 2 2 3 3 2 2 1 1 1 8 11 1781000000 2792500 535960000 1242300000 3894 1079;462;1274;414;1254;1905;1415 4055 15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016 13126;13127;13128;13129;13130;13131;13132;13133;13134;13135;13136;13137;13138;13139;13140;13141;13142;13143;13144;13145;13146;13147;13148;13149;13150;13151;13152;13153;13154;13155;13156;13157;13158;13159;13160;13161;13162;13163;13164;13165;13166;13167;13168;13169;13170;13171;13172;13173;13174;13175;13176 13139 51 2792500 180570000 196560000 FPGQLNADLRK HLVSATMSGVTTCLRFPGQLNADLRKLAVN TCLRFPGQLNADLRKLAVNMVPFPRLHFFM R F P R K L 1 1 1 1 0 1 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 11 1 1257.683 P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;P04350;Q13509;Q3ZCM7;Q9BUF5 P68371 242 252 TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 2;3 2.4077E-15 177.58 By MS/MS By MS/MS 5.6 2.01 1 6 6 3 1 1 2 11 9 858700000 0 488670000 370030000 3895 1079;462;1274;414;1254;1905;1415 4056 16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036 13177;13178;13179;13180;13181;13182;13183;13184;13185;13186;13187;13188;13189;13190;13191;13192;13193;13194;13195;13196;13197;13198;13199;13200;13201;13202;13203;13204;13205;13206;13207;13208;13209;13210;13211;13212;13213;13214;13215 13196 39 0 149570000 56974000 FPGYDSESK GAVDGGLSIPHSTKRFPGYDSESKEFNAEV PHSTKRFPGYDSESKEFNAEVHRKHIMGQN R F P S K E 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 9 0 1028.4451 P46777 P46777 180 188 RPL5 60S ribosomal protein L5 yes yes 2 0.048161 72.038 By MS/MS By matching 5.67 0.471 1 2 2 1 41082000 0 15087000 25995000 3896 828 4057 16037;16038;16039 13216 13216 1 0 5102800 3889100 FPKAEFAEVSK ERAFKAWAVARLSQRFPKAEFAEVSKLVTD LSQRFPKAEFAEVSKLVTDLTKVHTECCHG R F P S K L 2 0 0 0 0 0 2 0 0 0 0 2 0 2 1 1 0 0 0 1 0 0 11 1 1251.6499 CON__P02768-1;P02768 CON__P02768-1 247 257 ALB Serum albumin yes no 2 7.2232E-05 151.79 By MS/MS 9 0 1 1 3184600 3184600 0 0 + 3897 44 4058 16040 13217 13217 1 1787600 0 0 FPLDYYSIPFPTPTTPLTGR PQVYGYDDLQMLQTRFPLDYYSIPFPTPTT YSIPFPTPTTPLTGRDGSLASNPYSGDLTK R F P G R D 0 1 0 1 0 0 0 1 0 1 2 0 0 2 5 1 4 0 2 0 0 0 20 0 2282.1623 Q14157 Q14157 830 849 UBAP2L Ubiquitin-associated protein 2-like yes yes 2;3 1.6997E-07 107.99 By MS/MS 2 0 2 2 2388100 0 2388100 0 3898 1287 4059 16041;16042 13218;13219 13218 2 0 1075400 0 FPLFGGWK LLILDDSVEMEIRPRFPLFGGWKTHYIVGY EMEIRPRFPLFGGWKTHYIVGYNLPSYEYL R F P W K T 0 0 0 0 0 0 0 2 0 0 1 1 0 2 1 0 0 1 0 0 0 0 8 0 950.50142 P04843 P04843 320 327 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.023759 81.381 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 2 4 17900000 0 5474300 12425000 3899 419 4060 16043;16044;16045;16046;16047;16048 13220;13221;13222;13223 13222 4 0 2200700 2389700 FPLTTESAMK SAPRRNKLDHYAIIKFPLTTESAMKKIEDN YAIIKFPLTTESAMKKIEDNNTLVFIVDVK K F P M K K 1 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 2 0 0 0 0 0 10 0 1123.5583 P62750 P62750 79 88 RPL23A 60S ribosomal protein L23a yes yes 2 0.00019279 126.24 By MS/MS By MS/MS 7.2 0.98 1 3 1 3 2 318330000 0 147920000 170410000 3900 1031 4061;4062 16049;16050;16051;16052;16053 13224;13225;13226;13227;13228;13229;13230;13231;13232;13233 13230 10 0 84765000 33822000 FPNLVDPWTPHLYAR VRSNLMVATGDLAIRFPNLVDPWTPHLYAR FPNLVDPWTPHLYARLRDPAQQVRKTAGLV R F P A R L 1 1 1 1 0 0 0 0 1 0 2 0 0 1 3 0 1 1 1 1 0 0 15 0 1824.9311 Q15021 Q15021 1086 1100 NCAPD2 Condensin complex subunit 1 yes yes 3 0.018555 52.823 By matching By MS/MS 1.5 0.5 1 1 1 1 3183000 0 221930 2961000 3901 1332 4063 16054;16055 13234 13234 1 0 108480 669140 FPNMVVAQVTR LQIALIALFSEMLYRFPNMVVAQVTRESVQ MLYRFPNMVVAQVTRESVQQAIASGITAQQ R F P T R E 1 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 3 0 0 11 0 1260.6649 Q92759 Q92759 338 348 GTF2H4 General transcription factor IIH subunit 4 yes yes 2 0.0047323 101.97 By MS/MS 5 0 1 1 5559500 0 5559500 0 3902 1720 4064 16056 13235 13235 1 0 1433100 0 FPPFFTLQPNVDTR ______________________________ RFPPFFTLQPNVDTRQKQLAAWCSLVLSFC R F P T R Q 0 1 1 1 0 1 0 0 0 0 1 0 0 3 3 0 2 0 0 1 0 0 14 0 1677.8515 Q9BRG1 Q9BRG1 13 26 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 2 0.002025 102.52 By MS/MS By MS/MS 7 0 2 1 1 4497500 0 1117800 3379700 3903 1888 4065 16057;16058 13236;13237 13237 2 0 641860 599700 FPPLGGGGGIGYEANPGVPPATMSGSMMGSDMR GAMNMGDPYGSGGQKFPPLGGGGGIGYEAN PPATMSGSMMGSDMRTERFGQGGAGPVGGQ K F P M R T 2 1 1 1 0 0 1 9 0 1 1 0 4 1 5 3 1 0 1 1 0 0 33 0 3194.4293 P23246 P23246 631 663 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 4.8185E-42 122.31 By MS/MS By MS/MS 2.17 0.687 1 3 2 2 4 79279000 0 35027000 44253000 3904 638 4066;4067 16059;16060;16061;16062;16063;16064 13238;13239;13240;13241;13242;13243;13244;13245;13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256;13257 13246 284 20 0 15773000 9207700 FPPVVFYTPK QTRIKIGLNSKMPSRFPPVVFYTPKELGGL KMPSRFPPVVFYTPKELGGLGMLSMGHVLI R F P P K E 0 0 0 0 0 0 0 0 0 0 0 1 0 2 3 0 1 0 1 2 0 0 10 0 1193.6485 Q6P2Q9 Q6P2Q9 1311 1320 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00026673 131.22 By MS/MS By MS/MS 1.29 0.452 5 2 3 4 26091000 0 12112000 13979000 3905 1490 4068 16065;16066;16067;16068;16069;16070;16071 13258;13259;13260;13261;13262;13263;13264;13265;13266;13267;13268 13266 11 0 5900000 3022300 FPPYYMR PEGQAQQRRPYRRRRFPPYYMRRPYGRRPQ RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ R F P M R R 0 1 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 0 7 0 972.45276 P67809 P67809 193 199 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 2 0.0083045 123.34 By MS/MS By MS/MS 5 0 3 2 1 14332000 0 9802100 4529600 3906 1072 4069 16072;16073;16074 13269;13270;13271;13272;13273;13274;13275;13276;13277 13271 9 0 2526700 631790 FPQLDSTSFANSR TTVGSAEKRAYLQARFPQLDSTSFANSRDT ARFPQLDSTSFANSRDTSFEQHVLWHTGGK R F P S R D 1 1 1 1 0 1 0 0 0 0 1 0 0 2 1 3 1 0 0 0 0 0 13 0 1468.6947 P49327 P49327 1712 1724 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.0019383 108.9 By matching By MS/MS 1 0 2 1 1 6098300 2203500 0 3894800 3907 853 4070 16075;16076 13278 13278 1 2203500 0 839190 FPSLLTHNENMVAK QIPRILGPGLNKAGKFPSLLTHNENMVAKV KFPSLLTHNENMVAKVDEVKSTIKFQMKKV K F P A K V 1 0 2 0 0 0 1 0 1 0 2 1 1 1 1 1 1 0 0 1 0 0 14 0 1599.8079 P62906 P62906 134 147 RPL10A 60S ribosomal protein L10a yes yes 2;3 8.8004E-107 264.96 By matching By MS/MS By MS/MS 5.83 1.86 1 2 1 1 4 7 2 2 8 8 1436900000 11950000 470680000 954230000 3908 1049 4071;4072 16077;16078;16079;16080;16081;16082;16083;16084;16085;16086;16087;16088;16089;16090;16091;16092;16093;16094 13279;13280;13281;13282;13283;13284;13285;13286;13287;13288;13289;13290;13291;13292;13293;13294;13295;13296;13297;13298;13299;13300 13286 503 22 13251000 263600000 166790000 FPSVSLQEASSFFQR QRPPRRGHRQLSLPRFPSVSLQEASSFFQR FPSVSLQEASSFFQRDRPARHPQEQPLW__ R F P Q R D 1 1 0 0 0 2 1 0 0 0 1 0 0 3 1 4 0 0 0 1 0 0 15 0 1728.8471 Q16378 Q16378 107 121 PRR4 Proline-rich protein 4 yes yes 2;3 3.3959E-127 271.21 By MS/MS 6.31 2.95 1 1 1 1 1 1 1 2 2 2 13 223420000 223420000 0 0 3909 1385 4073 16095;16096;16097;16098;16099;16100;16101;16102;16103;16104;16105;16106;16107 13301;13302;13303;13304;13305;13306;13307;13308;13309;13310;13311;13312 13304 12 183790000 0 0 FPTLWSGAR VSKDRYGGQPLFSEKFPTLWSGARSTYGVT PLFSEKFPTLWSGARSTYGVTKGKVCFEAK K F P A R S 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 1 0 0 0 0 9 0 1033.5345 Q1KMD3 Q1KMD3 274 282 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 0.00036769 138.26 By matching By MS/MS By MS/MS 2.29 1.03 2 2 2 1 1 2 4 81918000 2050700 25328000 54539000 3910 1404 4074 16108;16109;16110;16111;16112;16113;16114 13313;13314;13315;13316 13313 4 2050700 11226000 11888000 FPTYPVPHYSFF AYGLPKRMVLLPVMKFPTYPVPHYSFF___ VMKFPTYPVPHYSFF_______________ K F P F F - 0 0 0 0 0 0 0 0 1 0 0 0 0 3 3 1 1 0 2 1 0 0 12 0 1500.7078 Q96SI9 Q96SI9 661 672 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.02 84.743 By MS/MS 3 0 1 1 3048500 0 3048500 0 3911 1834 4075 16115 13317 13317 1 0 1299600 0 FPVAPLIPYPLITK PRKKKKEKKEDIFRRFPVAPLIPYPLITKE RFPVAPLIPYPLITKEDINAIEMEEDKRDL R F P T K E 1 0 0 0 0 0 0 0 0 2 2 1 0 1 4 0 1 0 1 1 0 0 14 0 1567.9378 P49756 P49756 248 261 RBM25 RNA-binding protein 25 yes yes 2 0.0019482 103.08 By MS/MS By MS/MS 2.83 1.34 1 2 1 1 1 5 1 14734000 0 10581000 4153400 3912 866 4076 16116;16117;16118;16119;16120;16121 13318;13319;13320 13318 2 0 4628200 938600 FPVTDAVNK QACTGGIIDPSTGERFPVTDAVNKGLVDKI PSTGERFPVTDAVNKGLVDKIMVDRINLAQ R F P N K G 1 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 2 0 0 9 0 989.5182 Q15149 Q15149 4467 4475 PLEC Plectin yes yes 2 0.0055231 96.111 By MS/MS By matching 2 0.816 1 1 1 2 1 31990000 0 17900000 14089000 3913 1348 4077 16122;16123;16124 13321 13321 1 0 8663100 2732700 FQDGDLTLYQSNTILR EGSLKASCLYGQLPKFQDGDLTLYQSNTIL QDGDLTLYQSNTILRHLGRTLGLYGKDQQE K F Q L R H 0 1 1 2 0 2 0 1 0 1 3 0 0 1 0 1 2 0 1 0 0 0 16 0 1882.9425 P09211 P09211 56 71 GSTP1 Glutathione S-transferase P yes yes 2;3 1.4619E-12 178.32 By MS/MS By MS/MS By MS/MS 7.75 1.09 5 1 1 1 1 3 4 75969000 2506900 7512300 65949000 3914 482 4078 16125;16126;16127;16128;16129;16130;16131;16132 13322;13323;13324;13325;13326;13327 13322 6 5403000 10489000 13018000 FQDGVLEPDFPR CQGKTYLFKGSQYWRFQDGVLEPDFPRNIS YWRFQDGVLEPDFPRNISDGFGGIPDDAHL R F Q P R N 0 1 0 2 0 1 1 1 0 0 1 0 0 2 2 0 0 0 0 1 0 0 12 0 1418.683 CON__Q3ZBS7 CON__Q3ZBS7 226 237 yes yes 2 1.746E-25 202.05 By MS/MS By MS/MS By MS/MS 4.94 1.95 1 1 2 3 3 3 2 2 6 3 8 709780000 213580000 13531000 482670000 + 3915 88 4079 16133;16134;16135;16136;16137;16138;16139;16140;16141;16142;16143;16144;16145;16146;16147;16148;16149 13328;13329;13330;13331;13332;13333;13334;13335;13336;13337;13338;13339;13340;13341;13342;13343;13344;13345;13346;13347;13348;13349 13343 22 202550000 4200900 81097000 FQDLGAAYEVLSDSEK LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE QDLGAAYEVLSDSEKRKQYDTYGEEGLKDG K F Q E K R 2 0 0 2 0 1 2 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 16 0 1770.8312 Q9UBS4 Q9UBS4 67 82 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 2 5.1372E-06 159.08 By MS/MS 5 0 1 1 14602000 0 0 14602000 3916 2134 4080 16150 13350 13350 1 0 0 2036700 FQDLGAAYEVLSDSEKR LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE DLGAAYEVLSDSEKRKQYDTYGEEGLKDGH K F Q K R K 2 1 0 2 0 1 2 1 0 0 2 1 0 1 0 2 0 0 1 1 0 0 17 1 1926.9323 Q9UBS4 Q9UBS4 67 83 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 2;3 8.483E-06 103.04 By MS/MS 5 0 2 2 16618000 0 0 16618000 3917 2134 4081 16151;16152 13351;13352 13351 2 0 0 2317800 FQDTAEALAAFTALMEGK PEKANKIVKLKHFEKFQDTAEALAAFTALM TAEALAAFTALMEGKINKQLKKVLKKIVKE K F Q G K I 5 0 0 1 0 1 2 1 0 0 2 1 1 2 0 0 2 0 0 0 0 0 18 0 1912.9241 Q9Y2X3 Q9Y2X3 50 67 NOP58 Nucleolar protein 58 yes yes 2;3 1.7237E-08 137.46 By MS/MS By MS/MS By MS/MS 2.91 1.16 2 2 2 5 1 1 9 275020000 1600100 4867200 268560000 3918 2254 4082;4083 16153;16154;16155;16156;16157;16158;16159;16160;16161;16162;16163 13353;13354;13355;13356;13357;13358;13359;13360;13361;13362;13363 13359 11 1248400 1615300 48119000 FQEMIETTLDMDQVENHEFLVKPSFDPNLSELR VFVTPLTDLRSDFSKFQEMIETTLDMDQVE FLVKPSFDPNLSELREIMNDLEKKMQSTLI K F Q L R E 0 1 2 3 0 2 5 0 1 1 4 1 2 3 2 2 2 0 0 2 0 0 33 1 3950.8707 P43246 P43246 450 482 MSH2 DNA mismatch repair protein Msh2 yes yes 4 7.8633E-07 51.758 By MS/MS 2 0 1 1 11464000 0 0 11464000 3919 813 4084 16164 13364 13364 1 0 0 2590600 FQEQSQLLYLLDVVR YHVLAAYYSHLEGARFQEQSQLLYLLDVVR FQEQSQLLYLLDVVRNGIRTQDMRLTFTLA R F Q V R N 0 1 0 1 0 3 1 0 0 0 4 0 0 1 0 1 0 0 1 2 0 0 15 0 1849.9938 O60287 O60287 1702 1716 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2;3 2.946E-07 165.7 By MS/MS 1 0 2 2 6949300 0 0 6949300 3920 224 4085 16165;16166 13365;13366 13366 2 0 0 1497300 FQETEFLSPPR PLDVENIQKRIDQSKFQETEFLSPPRKVPR DQSKFQETEFLSPPRKVPRLSEKSVEERDS K F Q P R K 0 1 0 0 0 1 2 0 0 0 1 0 0 2 2 1 1 0 0 0 0 0 11 0 1349.6616 P42166 P42166 417 427 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 1.977E-06 153.05 By MS/MS 3 0 1 1 13286000 0 0 13286000 3921 798 4086 16167 13367 13367 1 0 0 2576900 FQFLWGPR KYLEYKQVPSSDPPRFQFLWGPRAYAETSK PSSDPPRFQFLWGPRAYAETSKMKVLEFLA R F Q P R A 0 1 0 0 0 1 0 1 0 0 1 0 0 2 1 0 0 1 0 0 0 0 8 0 1049.5447 O15479 O15479 271 278 MAGEB2 Melanoma-associated antigen B2 yes yes 2 0.00093695 122.79 By MS/MS By matching 6 0 2 1 1 2429500 0 1462100 967410 3922 183 4087 16168;16169 13368 13368 1 0 506120 144740 FQIGDYLDIAITPPNR GRKGTDDSMTLQSQKFQIGDYLDIAITPPN QIGDYLDIAITPPNRAPPPSGRMRPY____ K F Q N R A 1 1 1 2 0 1 0 1 0 3 1 0 0 1 2 0 1 0 1 0 0 0 16 0 1831.9468 O00422 O00422 127 142 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2 0.00010454 103.75 By MS/MS 8 0 1 1 7756700 0 0 7756700 3923 120 4088 16170 13369 13369 1 0 0 1189200 FQIMNEIVYEK EQTYVGITEKKAIKRFQIMNEIVYEKIMEH AIKRFQIMNEIVYEKIMEHAGKNQVLVFVH R F Q E K I 0 0 1 0 0 1 2 0 0 2 0 1 1 1 0 0 0 0 1 1 0 0 11 0 1412.701 O75643 O75643 701 711 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.010563 90.108 By MS/MS 1 0 1 1 38056000 0 0 38056000 3924 277 4089 16171 13370 13370 1 0 0 8199800 FQIQDISVETEDNKEK NHRLTLGLIWTIILRFQIQDISVETEDNKE QIQDISVETEDNKEKKSAKDALLLWCQMKT R F Q E K K 0 0 1 2 0 2 3 0 0 2 0 2 0 1 0 1 1 0 0 1 0 0 16 1 1921.9269 Q01082;O15020 Q01082 157 172 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 1.8551E-17 186.17 By MS/MS 1 0 1 1 9131000 0 0 9131000 3925 1128;160 4090 16172 13371 13371 1 0 0 1967400 FQLFGSPSGQK LRQAQEKFGKDKSPKFQLFGSPSGQKDLLF KSPKFQLFGSPSGQKDLLFKDSAIGFSRVP K F Q Q K D 0 0 0 0 0 2 0 2 0 0 1 1 0 2 1 2 0 0 0 0 0 0 11 0 1194.6033 P02788 P02788 305 315 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 2.46E-13 175.51 By MS/MS 5.36 2.77 1 1 1 2 1 1 1 1 1 1 11 469500000 469500000 0 0 3926 400 4091 16173;16174;16175;16176;16177;16178;16179;16180;16181;16182;16183 13372;13373;13374;13375;13376;13377;13378;13379;13380;13381 13379 10 541300000 0 0 FQMAYSNLLR KKKISTVVSSKEVNKFQMAYSNLLRANMDG KEVNKFQMAYSNLLRANMDGLKKRDKKNKT K F Q L R A 1 1 1 0 0 1 0 0 0 0 2 0 1 1 0 1 0 0 1 0 0 0 10 0 1241.6227 P37108 P37108 79 88 SRP14 Signal recognition particle 14 kDa protein yes yes 2 3.9461E-22 186.3 By MS/MS By MS/MS 7.6 0.49 2 3 3 2 213140000 0 126120000 87019000 3927 766 4092;4093 16184;16185;16186;16187;16188 13382;13383;13384;13385;13386;13387 13386 379 6 0 58739000 13753000 FQNALLVR IKQNCELFEQLGEYKFQNALLVRYTKKVPQ EQLGEYKFQNALLVRYTKKVPQVSTPTLVE K F Q V R Y 1 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 959.55525 CON__P02768-1;P02768 CON__P02768-1 427 434 ALB Serum albumin yes no 2 4.6427E-06 158.38 By MS/MS By MS/MS 5.64 2.9 1 2 2 1 1 1 1 2 8 3 4598200000 4590000000 0 8255800 + 3928 44 4094 16189;16190;16191;16192;16193;16194;16195;16196;16197;16198;16199 13388;13389;13390;13391;13392;13393;13394;13395;13396;13397;13398;13399;13400 13390 13 4117900000 0 9391500 FQPASAPAEDCISSSTEPKPDPK TKATSKPMGGSAPAKFQPASAPAEDCISSS EDCISSSTEPKPDPKKAKAPGLSSKAKSAQ K F Q P K K 3 0 0 2 1 1 2 0 0 1 0 2 0 1 5 4 1 0 0 0 0 0 23 1 2458.1322 Q14008 Q14008 1103 1125 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00018499 67.364 By MS/MS 1.5 0.5 1 1 2 18507000 0 0 18507000 3929 1279 4095 16200;16201 13401 13401 1 0 0 4031300 FQPGETLTEILETPATSEQEAEHQR TILLNTKRLIVDVIRFQPGETLTEILETPA LETPATSEQEAEHQRAMQRRAIRDAKTPDK R F Q Q R A 2 1 0 0 0 3 6 1 1 1 2 0 0 1 2 1 4 0 0 0 0 0 25 0 2840.3464 P46940 P46940 1398 1422 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 8.2401E-30 153.65 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 26270000 0 10801000 15469000 3930 835 4096 16202;16203;16204 13402;13403 13403 2 0 4863700 3378100 FQPPQVPDQAPAEAPTEK QWRNRQKNKRRCKNKFQPPQVPDQAPAEAP PQVPDQAPAEAPTEKTEVSPVPRTDSHEAR K F Q E K T 3 0 0 1 0 3 2 0 0 0 0 1 0 1 5 0 1 0 0 1 0 0 18 0 1948.9531 O43159 O43159 202 219 RRP8 Ribosomal RNA-processing protein 8 yes yes 2 3.2053E-08 115.24 By MS/MS 4 0 1 1 14310000 0 0 14310000 3931 188 4097 16205 13404 13404 1 0 0 2337300 FQQAIDSR KRDPTAEQFQEELEKFQQAIDSREDPVSCA FQEELEKFQQAIDSREDPVSCAFVVLMAHG K F Q S R E 1 1 0 1 0 2 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 8 0 963.47739 P31944 P31944 68 75 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 9.8703E-14 180.18 By MS/MS By matching By MS/MS 6.07 2.87 1 1 1 2 1 1 2 1 2 2 10 1 3 147840000 138020000 362380 9457000 3932 723 4098 16206;16207;16208;16209;16210;16211;16212;16213;16214;16215;16216;16217;16218;16219 13405;13406;13407;13408;13409;13410;13411;13412;13413;13414;13415;13416;13417;13418;13419;13420;13421 13406 16 158270000 120260 7295300 FQQAVDAVEEFLR HAHKEEMIKINKGKRFQQAVDAVEEFLRRA KRFQQAVDAVEEFLRRAKGKDQTSSHNSSD R F Q L R R 2 1 0 1 0 2 2 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 13 0 1550.7729 Q49A26 Q49A26 79 91 GLYR1 Putative oxidoreductase GLYR1 yes yes 2 6.175E-18 194.94 By matching By MS/MS By MS/MS 5.12 1.62 1 3 1 1 1 1 1 1 6 48840000 9985000 5958100 32896000 3933 1417 4099 16220;16221;16222;16223;16224;16225;16226;16227 13422;13423;13424;13425 13424 3 7790100 1977300 5626300 FQQHLEQEQWALQQQR KEALGQQERERARQRFQQHLEQEQWALQQQ QQHLEQEQWALQQQRQRLYSEVAEERERLG R F Q Q R Q 1 1 0 0 0 7 2 0 1 0 2 0 0 1 0 0 0 1 0 0 0 0 16 0 2096.0188 Q9UPN4 Q9UPN4 778 793 CEP131 Centrosomal protein of 131 kDa yes yes 2 7.4212E-36 213.73 By MS/MS 2 0 1 1 5215300 0 0 5215300 3934 2215 4100 16228 13426 13426 1 0 0 1178600 FQQVPTDALANK PPVDPNQEVPPGPPRFQQVPTDALANKLFG PPRFQQVPTDALANKLFGAPEPSTIARSLP R F Q N K L 2 0 1 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 1 0 0 12 0 1330.6881 Q6PKG0 Q6PKG0 742 753 LARP1 La-related protein 1 yes yes 2 0.00047487 126.31 By matching By MS/MS By MS/MS 2 0 3 1 1 1 52170000 2791800 32142000 17236000 3935 1497 4101 16229;16230;16231 13427;13428 13427 2 3363800 14474000 3895000 FQRPGDPQSAQDK CTKCGGAGHIASDCKFQRPGDPQSAQDKAR CKFQRPGDPQSAQDKARMDKEYLSLMAELG K F Q D K A 1 1 0 2 0 3 0 1 0 0 0 1 0 1 2 1 0 0 0 0 0 0 13 1 1472.7008 Q15637 Q15637 294 306 SF1 Splicing factor 1 yes yes 3 0.0033568 83.358 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 14691000 0 3761600 10929000 3936 1376 4102 16232;16233;16234 13429;13430 13430 2 0 1603600 2106800 FQSAAIGALQEASEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSAAIGALQEASEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 7 0 1 1 1 2 3 2 1 2 4 1 0 2 0 2 1 0 1 1 0 0 32 0 3436.6973 P84243 P84243 85 116 H3F3A Histone H3.3 yes yes 3 7.9017E-10 64 By MS/MS 2 0 1 1 6910500 0 0 6910500 3937 1114 4103 16235 13431 13431 1 0 0 1561600 FQSDSSSYPTVDSNSLLGQSR ASPMLKSGMSPEQSRFQSDSSSYPTVDSNS SYPTVDSNSLLGQSRLETAESKEKMALPPQ R F Q S R L 0 1 1 2 0 2 0 1 0 0 2 0 0 1 1 7 1 0 1 1 0 0 21 0 2274.04 Q9UQ35 Q9UQ35 1138 1158 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 1.3595E-05 78.324 By MS/MS 1 0 1 1 6368200 0 6368200 0 3938 2219 4104 16236 13432 13432 1 0 3112700 0 FQSISTEFLALMK GSADIKHLLPVETQRFQSISTEFLALMKKV QRFQSISTEFLALMKKVSKSPLVMDVLNIQ R F Q M K K 1 0 0 0 0 1 1 0 0 1 2 1 1 2 0 2 1 0 0 0 0 0 13 0 1513.7851 Q14204 Q14204 1568 1580 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.014139 83.862 By MS/MS 1 0 1 1 773270 0 773270 0 3939 1292 4105 16237 13433 13433 1 0 377970 0 FQSIVIGCALEDQK SACSSEVPHGPVDQKFQSIVIGCALEDQKK KFQSIVIGCALEDQKKIKRRLETLLRNIEN K F Q Q K K 1 0 0 1 1 2 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 14 0 1606.8025 O95816 O95816 155 168 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.0067632 85.845 By matching By MS/MS 6.33 0.471 2 1 1 2 17490000 4818300 0 12672000 3940 342 4106 16238;16239;16240 13434 13434 1 6415600 0 2011900 FQSLGVAFYR RLVTMQIWDTAGQERFQSLGVAFYRGADCC AGQERFQSLGVAFYRGADCCVLVFDVTAPN R F Q Y R G 1 1 0 0 0 1 0 1 0 0 1 0 0 2 0 1 0 0 1 1 0 0 10 0 1186.6135 P51149 P51149 70 79 RAB7A Ras-related protein Rab-7a yes yes 2 0.00038715 137.9 By MS/MS By MS/MS 10 0 2 1 1 6369900 0 2713800 3656100 3941 890 4107 16241;16242 13435;13436 13436 2 0 13730000 7996200 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAK RLVREIAQDFKTDLRFQSSAVMALQEASEA VGLFEDTNLCAIHAKRVTIMPKDIQLARRI R F Q A K R 6 0 1 1 1 2 3 1 1 1 4 1 1 2 0 3 1 0 1 2 0 0 32 0 3512.6956 Q71DI3 Q71DI3 85 116 HIST2H3A Histone H3.2 yes yes 3 1.2987E-25 101.27 By MS/MS 5 3 1 1 2 16063000 0 0 16063000 3942 1512 4108 16243;16244 13437;13438 13437 2 0 0 3319800 FQSSHHPTDITSLDQYVER IEDHSNRTRLAKLLRFQSSHHPTDITSLDQ HHPTDITSLDQYVERMKEKQDKIYFMAGSS R F Q E R M 0 1 0 2 0 2 1 0 2 1 1 0 0 1 1 3 2 0 1 1 0 0 19 0 2259.0556 P14625 P14625 512 530 HSP90B1 Endoplasmin yes yes 4 0.014975 43.164 By MS/MS 2 0 1 1 9434200 0 0 9434200 3943 560 4109 16245 13439 13439 1 0 0 2131900 FQSVPAQPGQTSPLLQYFGILLDQGQLNK NAPKGILRTPDTIRRFQSVPAQPGQTSPLL LQYFGILLDQGQLNKYESLELCRPVLQQGR R F Q N K Y 1 0 1 1 0 6 0 3 0 1 5 1 0 2 3 2 1 0 1 1 0 0 29 0 3186.6713 Q00610 Q00610 401 429 CLTC Clathrin heavy chain 1 yes yes 3 1.4286E-11 86.982 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 74648000 0 1191100 73457000 3944 1125 4110 16246;16247;16248;16249;16250 13440;13441;13442;13443 13442 4 0 557130 16393000 FQTEIQTVNK IADTMVQIFKGLQERFQTEIQTVNKQFPCE GLQERFQTEIQTVNKQFPCEPFKFLEPTLR R F Q N K Q 0 0 1 0 0 2 1 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 10 0 1206.6245 P14868 P14868 321 330 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 0.049581 72.928 By matching By MS/MS 4 0 2 1 1 11236000 1612000 0 9624500 3945 566 4111 16251;16252 13444 13444 1 1257600 0 1572000 FQTMEEK DLKFIDTTSKFGHGRFQTMEEKKAFMGPLK TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE R F Q E K K 0 0 0 0 0 1 2 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 7 0 911.40587 P39023 P39023 379 385 RPL3 60S ribosomal protein L3 yes yes 2 0.014935 111.65 By MS/MS By matching 5.8 0.748 2 2 1 3 2 45506000 0 43079000 2427800 3946 778 4112;4113 16253;16254;16255;16256;16257 13445;13446 13445 1 0 11169000 395930 FQTMEEKK DLKFIDTTSKFGHGRFQTMEEKKAFMGPLK SKFGHGRFQTMEEKKAFMGPLKKDRIAKEE R F Q K K A 0 0 0 0 0 1 2 0 0 0 0 2 1 1 0 0 1 0 0 0 0 0 8 1 1039.5008 P39023 P39023 379 386 RPL3 60S ribosomal protein L3 yes yes 2 0.0055062 106.04 By MS/MS 5.5 0.5 1 1 2 3011600 0 3011600 0 3947 778 4114 16258;16259 13447 13447 1 0 826700 0 FQVATDALK AQVAHADQQLRDLGKFQVATDALKSREPQA LRDLGKFQVATDALKSREPQAKPQLDLSID K F Q L K S 2 0 0 1 0 1 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 0 991.53385 Q14980 Q14980 1700 1708 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0025346 103.56 By MS/MS By MS/MS 1 0 2 1 1 100070000 0 29355000 70717000 3948 1327 4115 16260;16261 13448;13449 13448 2 0 14348000 15237000 FQVENSNR AAQVTIQSSGTFSTKFQVENSNRLLLQQVS SGTFSTKFQVENSNRLLLQQVSLPEVPGEY K F Q N R L 0 1 2 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 8 0 992.46756 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1294 1301 yes yes 2 0.011513 91.9 By MS/MS 1.5 0.5 1 1 2 2061200 2061200 0 0 + 3949 28 4116 16262;16263 13450 13450 1 2346200 0 0 FQVVINGR NMIEQSGPPHEPRFKFQVVINGREFPPAEA PHEPRFKFQVVINGREFPPAEAGSKKVAKQ K F Q G R E 0 1 1 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 931.52395 P55265 P55265 537 544 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.00079071 124.89 By MS/MS 2 0 1 1 11375000 0 0 11375000 3950 941 4117 16264 13451 13451 1 0 0 2570500 FQVYQLR IDVQESFCMEEKQNKFQVYQLRFQFLPHAY CMEEKQNKFQVYQLRFQFLPHAYYQQEKCL K F Q L R F 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 952.51305 O95602 O95602 1312 1318 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.017647 106.76 By MS/MS 1 0 1 1 10235000 0 0 10235000 3951 330 4118 16265 13452 13452 1 0 0 2205300 FQWDLNAWTK LKMIVDPVEPHGEMKFQWDLNAWTKSAEAF HGEMKFQWDLNAWTKSAEAFGKIVAERPGT K F Q T K S 1 0 1 1 0 1 0 0 0 0 1 1 0 1 0 0 1 2 0 0 0 0 10 0 1307.6299 Q13263 Q13263 391 400 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.00070185 114.64 By MS/MS By MS/MS 4.62 2.37 1 2 2 2 1 2 1 1 1 5 8 87273000 0 18653000 68620000 3952 1235 4119 16266;16267;16268;16269;16270;16271;16272;16273;16274;16275;16276;16277;16278 13453;13454;13455;13456;13457;13458;13459;13460 13453 8 0 7684000 13661000 FREDHPDLIQNAK DFQREKQEFERNLARFREDHPDLIQNAKKS ARFREDHPDLIQNAKKSDIPEKPKTPQQLW R F R A K K 1 1 1 2 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 13 1 1581.79 P17480 P17480 179 191 UBTF Nucleolar transcription factor 1 yes yes 2;3 6.6563E-05 145 By MS/MS By MS/MS 2.6 1.62 3 3 2 1 1 2 8 342750000 0 59625000 283120000 3953 584 4120 16279;16280;16281;16282;16283;16284;16285;16286;16287;16288 13461;13462;13463;13464;13465 13463 5 0 27076000 57920000 FREIQQELSSGR ATNIEQIFRSFVVSKFREIQQELSSGRNEG VSKFREIQQELSSGRNEGQLNGETNTPIEG K F R G R N 0 2 0 0 0 2 2 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 12 1 1448.7372 P18583 P18583 17 28 SON Protein SON yes yes 2 0.00013451 153.54 By MS/MS 1 0 1 1 6453200 0 0 6453200 3954 596 4121 16289 13466 13466 1 0 0 1390500 FRENLIYTYIGPVLVSVNPYR NFTSEAAFIENLRRRFRENLIYTYIGPVLV YTYIGPVLVSVNPYRDLQIYSRQHMERYRG R F R Y R D 0 2 2 0 0 0 1 1 0 2 2 0 0 1 2 1 1 0 3 3 0 0 21 1 2512.3478 O00159 O00159 71 91 MYO1C Unconventional myosin-Ic yes yes 3 2.4365E-06 90.968 By MS/MS 2 0 1 1 1197800 0 0 1197800 3955 106 4122 16290 13467 13467 1 0 0 270670 FRPAGAAPRPPPK NRSREARKDRTPPPRFRPAGAAPRPPPKPM PRFRPAGAAPRPPPKPM_____________ R F R P K P 3 2 0 0 0 0 0 1 0 0 0 1 0 1 5 0 0 0 0 0 0 0 13 2 1360.7728 P62854;Q5JNZ5 P62854 101 113 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 3 0.04979 53.252 By matching By MS/MS 10 0 2 1 1 989640 0 253380 736270 3956 1040 4123 16291;16292 13468 13468 1 0 1281900 1610300 FRPLQLETINVTMAGK GKVKDILQNVFKLEKFRPLQLETINVTMAG RPLQLETINVTMAGKEVFLVMPTGGGKSLC K F R G K E 1 1 1 0 0 1 1 1 0 1 2 1 1 1 1 0 2 0 0 1 0 0 16 1 1816.9869 P46063 P46063 92 107 RECQL ATP-dependent DNA helicase Q1 yes yes 2;3 0.00032584 146.96 By matching By MS/MS By MS/MS 3 0 4 1 1 2 91413000 1682500 20595000 69135000 3957 823 4124 16293;16294;16295;16296 13469;13470;13471 13470 3 1941300 8779800 13409000 FRPLTWQTSHPYILADR NQEIHNLGRFITVMKFRPLTWQTSHPYILA PLTWQTSHPYILADRMEDLTNPEDIRTNIK K F R D R M 1 2 0 1 0 1 0 0 1 1 2 0 0 1 2 1 2 1 1 0 0 0 17 1 2100.0905 Q14692 Q14692 244 260 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 5.9924E-06 107.57 By MS/MS 5 0 1 1 4841100 0 0 4841100 3958 1315 4125 16297 13472 13472 1 0 0 675240 FRPMDNLSGGEK YLDGINYNCVAPGKRFRPMDNLSGGEKTVA GKRFRPMDNLSGGEKTVAALALLFAIHSYK R F R E K T 0 1 1 1 0 0 1 2 0 0 1 1 1 1 1 1 0 0 0 0 0 0 12 1 1349.6398 Q14683 Q14683 1122 1133 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00050961 142.97 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 86721000 0 13306000 73415000 3959 1312 4126 16298;16299;16300;16301;16302;16303;16304 13473;13474;13475;13476;13477;13478 13478 6 0 6094700 16117000 FRPVPLGQTFLGIK LHVNPYIGLFFFDGRFRPVPLGQTFLGIKC RFRPVPLGQTFLGIKCANKMQQLNNMDEVC R F R I K C 0 1 0 0 0 1 0 2 0 1 2 1 0 2 2 0 1 0 0 1 0 0 14 1 1571.9188 Q8N3C0 Q8N3C0 676 689 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.00015307 116.19 By MS/MS 1.5 0.5 1 1 2 9417800 0 9417800 0 3960 1602 4127 16305;16306 13479 13479 1 0 4561200 0 FRQDWGPITSISFR QVIIHNIKFNETLMKFRQDWGPITSISFRT KFRQDWGPITSISFRTDGHPVMAAGSPCGH K F R F R T 0 2 0 1 0 1 0 1 0 2 0 0 0 2 1 2 1 1 0 0 0 0 14 1 1708.8685 Q8NI36 Q8NI36 285 298 WDR36 WD repeat-containing protein 36 yes yes 3 0.00053117 73.775 By MS/MS 2 0 1 1 0 0 0 0 3961 1648 4128 16307 13480 13480 1 0 0 0 FSALQQAVPTESTDNRR AASEAARPATSTLNRFSALQQAVPTESTDN ALQQAVPTESTDNRRVVQRSSLSRERGEKA R F S R R V 2 2 1 1 0 2 1 0 0 0 1 0 0 1 1 2 2 0 0 1 0 0 17 1 1918.9497 Q04637 Q04637 1123 1139 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 3 1.4203E-06 124.92 By MS/MS By matching 1.5 0.5 1 1 1 1 13668000 0 7980900 5687200 3962 1159 4129 16308;16309 13481 13481 1 0 3900900 1285200 FSASGELGNGNIK IGDAVVISCAKDGVKFSASGELGNGNIKLS VKFSASGELGNGNIKLSQTSNVDKEEEAVT K F S I K L 1 0 2 0 0 0 1 3 0 1 1 1 0 1 0 2 0 0 0 0 0 0 13 0 1292.6361 P12004 P12004 169 181 PCNA Proliferating cell nuclear antigen yes yes 2 1.0748E-24 200.6 By MS/MS By MS/MS By MS/MS 5.6 1.02 1 1 2 1 2 2 1 97867000 35322000 16968000 45577000 3963 531 4130 16310;16311;16312;16313;16314 13482;13483;13484 13483 3 32037000 5657700 6818700 FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP RFFETRMNEAFGDTKFSAVLVEPPPMSLPG GLSSQELSGGPGDGP_______________ K F S G P - 2 0 0 1 0 1 2 6 0 0 4 0 1 1 6 5 0 0 0 2 0 0 31 0 2949.443 Q13263 Q13263 805 835 TRIM28 Transcription intermediary factor 1-beta yes yes 3 0.00043509 42.275 By matching By MS/MS By MS/MS 2.67 0.745 3 2 1 1 2 3 23682000 89483 7279100 16314000 3964 1235 4131 16315;16316;16317;16318;16319;16320 13485;13486;13487 13485 3 107820 3266300 3268400 FSDFLLDPYK VVEDELVKKYSLPSKFSDFLLDPYKYMTLN SLPSKFSDFLLDPYKYMTLNPSTKRKNTGS K F S Y K Y 0 0 0 2 0 0 0 0 0 0 2 1 0 2 1 1 0 0 1 0 0 0 10 0 1243.6125 Q9UIG0 Q9UIG0 288 297 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0057387 96.331 By MS/MS 2.5 1.5 1 1 2 1149900 0 1149900 0 3965 2164 4132 16321;16322 13488;13489 13489 2 0 381600 0 FSDHVALLSVFQAWDDAR GKRLGYIHRNFAGNRFSDHVALLSVFQAWD HVALLSVFQAWDDARMGGEEAEIRFCEHKR R F S A R M 3 1 0 3 0 1 0 0 1 0 2 0 0 2 0 2 0 1 0 2 0 0 18 0 2076.0065 Q08211 Q08211 912 929 DHX9 ATP-dependent RNA helicase A yes yes 3 3.4013E-09 146.3 By MS/MS 2 0 1 1 15073000 0 0 15073000 3966 1182 4133 16323 13490 13490 1 0 0 3406100 FSDKEEHEQNDSISGK LMECKAKPVGSPLFKFSDKEEHEQNDSISG SDKEEHEQNDSISGKTGETVVEEMIATRKV K F S G K T 0 0 1 2 0 1 3 1 1 1 0 2 0 1 0 3 0 0 0 0 0 0 16 1 1848.8126 Q92576 Q92576 288 303 PHF3 PHD finger protein 3 yes yes 3 0.069739 33.796 By MS/MS 1 0 1 1 1407900 0 0 1407900 3967 1709 4134 16324 13491 13491 1 0 0 303350 FSEGNILELLHR VKQAMQKHLLQGWLRFSEGNILELLHRLDV WLRFSEGNILELLHRLDVENSSEVAVSVLN R F S H R L 0 1 1 0 0 0 2 1 1 1 3 0 0 1 0 1 0 0 0 0 0 0 12 0 1426.7569 Q9BPX3 Q9BPX3 276 287 NCAPG Condensin complex subunit 3 yes yes 3 4.8759E-05 130.56 By MS/MS 2 0.816 1 1 1 3 10548000 0 0 10548000 3968 1873 4135 16325;16326;16327 13492 13492 1 0 0 2333100 FSELVMK VLLQDSLLATASSPKFSELVMKCLWRMVRL LATASSPKFSELVMKCLWRMVRLLPDTINS K F S M K C 0 0 0 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 7 0 852.44153 Q14008 Q14008 1705 1711 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.041006 82.386 By MS/MS By MS/MS 1 0 2 1 1 23881000 0 5484600 18397000 3969 1279 4136 16328;16329 13493;13494 13494 2 0 2680800 3963800 FSFGLLDLPFR SKAIKFSVKEGKPEKFSFGLLDLPFRVGVP KPEKFSFGLLDLPFRVGVPFNIPLEFQDEF K F S F R V 0 1 0 1 0 0 0 1 0 0 3 0 0 3 1 1 0 0 0 0 0 0 11 0 1310.7023 A6NHR9 A6NHR9 826 836 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0011108 113.22 By MS/MS 1.5 0.5 1 1 2 939990 0 939990 0 3970 15 4137 16330;16331 13495;13496 13496 2 0 432970 0 FSFWDKDAR HPVHGTLATVGSDGRFSFWDKDARTKLKTS VGSDGRFSFWDKDARTKLKTSEQLDQPISA R F S A R T 1 1 0 2 0 0 0 0 0 0 0 1 0 2 0 1 0 1 0 0 0 0 9 1 1170.5458 P78406 P78406 297 305 RAE1 mRNA export factor yes yes 2 0.041841 96.311 By MS/MS 5 0 1 1 8173200 0 0 8173200 3971 1087 4138 16332 13497 13497 1 0 0 1140000 FSGSGSGTDFTLK LIYEVSSRFSGVPDRFSGSGSGTDFTLKIS DRFSGSGSGTDFTLKISRVEAEDVGVYYCM R F S L K I 0 0 0 1 0 0 0 3 0 0 1 1 0 2 0 3 2 0 0 0 0 0 13 0 1302.6092 A2NJV5;A0A0A0MRZ7;A0A075B6S6;A0A075B6S2;A0A075B6P5;A0A087WW87;P06310;P01615;P01614 A2NJV5 87 99 IGKV A18;IGKV2D-26;IGKV2D-30;IGKV2D-29;IGKV2D-28;IGKV2-40 Ig kappa chain V-II region RPMI 6410;Ig kappa chain V-II region FR;Ig kappa chain V-II region Cum yes no 2 0.00012131 152.07 By MS/MS 9.5 0.5 1 1 2 23484000 23484000 0 0 3972 1 4139 16333;16334 13498;13499 13498 2 20743000 0 0 FSGSGSGTDFTLTISR LIYGASSRATGIPDRFSGSGSGTDFTLTIS SGSGSGTDFTLTISRLEPEDFAVYYCQQYG R F S S R L 0 1 0 1 0 0 0 3 0 1 1 0 0 2 0 4 3 0 0 0 0 0 16 0 1631.7791 P01619;A0A0C4DH25 P01619 83 98 IGKV3D-20 Ig kappa chain V-III region B6 yes no 2 1.7488E-59 230.59 By MS/MS 9.5 0.5 1 1 2 13652000 13652000 0 0 3973 377 4140 16335;16336 13500;13501 13500 2 11004000 0 0 FSGSNSGNTATLTISR VIYRDSNRPSGIPERFSGSNSGNTATLTIS SGSNSGNTATLTISRAQAGDEADYYCQVWD R F S S R A 1 1 2 0 0 0 0 2 0 1 1 0 0 1 0 4 3 0 0 0 0 0 16 0 1611.7853 A0A075B6K5;P80748 A0A075B6K5 80 95 IGLV3-9 Ig lambda chain V-III region LOI yes no 2 1.397E-74 246.3 By MS/MS 9.5 0.5 1 1 2 8271500 8271500 0 0 3974 0 4141 16337;16338 13502;13503 13502 2 7472500 0 0 FSGWYDADLSPAGHEEAK VLIRHGESAWNLENRFSGWYDADLSPAGHE WYDADLSPAGHEEAKRGGQALRDAGYEFDI R F S A K R 3 0 0 2 0 0 2 2 1 0 1 1 0 1 1 2 0 1 1 0 0 0 18 0 1978.8697 P18669 P18669 22 39 PGAM1 Phosphoglycerate mutase 1 yes yes 3 0.012733 46.494 By MS/MS 6.5 0.5 1 1 2 12134000 0 0 12134000 3975 598 4142 16339;16340 13504 13504 1 0 0 2069500 FSHLTSLPQQLPSQQLMSK PRPSPARPKKSEESRFSHLTSLPQQLPSQQ TSLPQQLPSQQLMSKDQDEQEELDFLFDEE R F S S K D 0 0 0 0 0 4 0 0 1 0 4 1 1 1 2 4 1 0 0 0 0 0 19 0 2169.1252 Q6PKG0 Q6PKG0 579 597 LARP1 La-related protein 1 yes yes 3 1.1676E-09 127.97 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 36213000 0 26847000 9365100 3976 1497 4143 16341;16342;16343 13505;13506 13505 2 0 11921000 2116300 FSISSHYQLK SSLQPRLIHRLRLPRFSISSHYQLKDILSQ LRLPRFSISSHYQLKDILSQLGIKKIFTSD R F S L K D 0 0 0 0 0 1 0 0 1 1 1 1 0 1 0 3 0 0 1 0 0 0 10 0 1208.619 CON__A2I7N3 CON__A2I7N3 312 321 yes yes 2 0.024888 80.239 By matching By MS/MS 8.5 0.5 1 1 1 1 13216000 1514200 0 11702000 + 3977 23 4144 16344;16345 13507 13507 1 1300000 0 3738200 FSIYPPIPGEESSLR AKQKVEQNAAPSHTKFSIYPPIPGEESSLR FSIYPPIPGEESSLRWAGKKFEEIPIAHIK K F S L R W 0 1 0 0 0 0 2 1 0 2 1 0 0 1 3 3 0 0 1 0 0 0 15 0 1690.8566 P82912 P82912 60 74 MRPS11 28S ribosomal protein S11, mitochondrial yes yes 2 0.0323 64.64 By MS/MS 7.5 0.5 1 1 2 7226200 0 0 7226200 3978 1100 4145 16346;16347 13508 13508 1 0 0 1169400 FSLFAGGMLR TPGEHQICLHSNSTKFSLFAGGMLRVHLDI SNSTKFSLFAGGMLRVHLDIQVGEHANDYA K F S L R V 1 1 0 0 0 0 0 2 0 0 2 0 1 2 0 1 0 0 0 0 0 0 10 0 1097.5692 Q9BVK6 Q9BVK6 129 138 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 2 0.036396 86.833 By matching By MS/MS 7 0 2 1 1 5807900 0 447780 5360100 3979 1916 4146 16348;16349 13509 13509 0 0 257120 951120 FSLIDLAGNER VFQIILRRKGKLHGKFSLIDLAGNERGADT LHGKFSLIDLAGNERGADTSSADRQTRLEG K F S E R G 1 1 1 1 0 0 1 1 0 1 2 0 0 1 0 1 0 0 0 0 0 0 11 0 1233.6354 O00139 O00139 453 463 KIF2A Kinesin-like protein KIF2A yes yes 2 4.3904E-07 156.83 By MS/MS By MS/MS 3 1.41 1 1 1 1 1 2 3 33183000 0 7592600 25590000 3980 104 4147 16350;16351;16352;16353;16354 13510;13511 13511 2 0 3446600 4817900 FSLLKPWA FIENGSEFAQKLLKKFSLLKPWA_______ AQKLLKKFSLLKPWA_______________ K F S W A - 1 0 0 0 0 0 0 0 0 0 2 1 0 1 1 1 0 1 0 0 0 0 8 1 960.54329 Q9GZZ8 Q9GZZ8 131 138 LACRT Extracellular glycoprotein lacritin yes yes 2 0.05369 97.473 By MS/MS 7.5 1.71 1 1 1 1 1 1 6 912340000 912340000 0 0 3981 1956 4148 16355;16356;16357;16358;16359;16360 13512 13512 1 888850000 0 0 FSMDFWQK LGRFDYSQCDIWYMRFSMDFWQKMLALGNQ CDIWYMRFSMDFWQKMLALGNQVGKLYVWD R F S Q K M 0 0 0 1 0 1 0 0 0 0 0 1 1 2 0 1 0 1 0 0 0 0 8 0 1087.4797 O75530 O75530 368 375 EED Polycomb protein EED yes yes 2 0.016148 87.323 By MS/MS 4 0.816 1 1 1 3 11066000 0 0 11066000 3982 268 4149 16361;16362;16363 13513 13513 1 0 0 1843900 FSMPGFK GPDWHLKMPKMKMPKFSMPGFKAEGPEVDV MPKMKMPKFSMPGFKAEGPEVDVNLPKADV K F S F K A 0 0 0 0 0 0 0 1 0 0 0 1 1 2 1 1 0 0 0 0 0 0 7 0 812.3891 Q09666 Q09666 885 891 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 0.058398 75.311 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 12918000 4224200 6781900 1912200 3983 1190 4150 16364;16365;16366 13514 13514 1 4224200 3314900 432120 FSNLLGTVYR ______________________________ KFAYRFSNLLGTVYRRGNLNFTCDGNSVIS R F S Y R R 0 1 1 0 0 0 0 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 10 0 1168.6241 Q15269 Q15269 7 16 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 4.5185E-39 169.21 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 12186000 0 0 12186000 3984 1352 4151 16367;16368;16369 13515;13516 13515 2 0 0 2679800 FSNNIISTFQNLYR SRHQFGQEKDVFAPRFSNNIISTFQNLYRC RFSNNIISTFQNLYRCPGDDKSKIVRVLNL R F S Y R C 0 1 3 0 0 1 0 0 0 2 1 0 0 2 0 2 1 0 1 0 0 0 14 0 1715.8631 Q9UPN6 Q9UPN6 88 101 SCAF8 Protein SCAF8 yes yes 2 0.011611 78.692 By MS/MS 2 0 1 1 1275800 0 1275800 0 3985 2216 4152 16370 13517 13517 1 0 574510 0 FSNSIPQSQTGNSETATPTNVDLPQVIPK HTHNMDGFFIAKFKKFSNSIPQSQTGNSET TATPTNVDLPQVIPKSENSSQPAKKAKGAA K F S P K S 1 0 3 1 0 3 1 1 0 2 1 1 0 1 4 4 4 0 0 2 0 0 29 0 3069.5255 P46087 P46087 587 615 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 2.7669E-05 51.568 By MS/MS 2.5 0.5 1 1 2 18166000 0 18166000 0 3986 824 4153 16371;16372 13518;13519 13518 2 0 8045200 0 FSNSSSSNEFSK QSCSNGQHEYGSCGRFSNSSSSNEFSKCDQ CGRFSNSSSSNEFSKCDQYGSGSSQSTSFE R F S S K C 0 0 2 0 0 0 1 0 0 0 0 1 0 2 0 6 0 0 0 0 0 0 12 0 1319.563 CON__Q5D862;Q5D862 CON__Q5D862 404 415 FLG2 Filaggrin-2 yes no 2 2.2089E-12 182.28 By MS/MS By MS/MS 5.43 3.06 2 1 2 1 1 1 2 1 1 2 10 4 310140000 293100000 0 17040000 + 3987 90 4154 16373;16374;16375;16376;16377;16378;16379;16380;16381;16382;16383;16384;16385;16386 13520;13521;13522;13523;13524;13525;13526;13527;13528;13529;13530;13531;13532 13524 13 341840000 0 10882000 FSNTGEDWYVLVGVAK QLEQNEAAFSVAVCRFSNTGEDWYVLVGVA SNTGEDWYVLVGVAKDLILNPRSVAGGFVY R F S A K D 1 0 1 1 0 0 1 2 0 0 1 1 0 1 0 1 1 1 1 3 0 0 16 0 1783.8781 Q15393 Q15393 896 911 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0021396 89.301 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 22050000 0 4119700 17931000 3988 1361 4155 16387;16388;16389;16390 13533;13534;13535 13534 3 0 1855200 3908400 FSPAGPILSIR GDLHPDVTEAMLYEKFSPAGPILSIRVCRD LYEKFSPAGPILSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 2 1 0 0 1 2 2 0 0 0 0 0 0 11 0 1156.6604 P11940;Q9H361;Q4VXU2 P11940 31 41 PABPC1;PABPC3;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like no no 2 3.6971E-07 157.96 By MS/MS By MS/MS 3.7 1.95 2 1 2 1 2 1 1 5 5 314740000 0 207020000 107730000 3989 530 4156 16391;16392;16393;16394;16395;16396;16397;16398;16399;16400 13536;13537;13538;13539;13540;13541;13542;13543;13544;13545 13538 10 0 87140000 19947000 FSPAGPVLSIR GDLHSDVTEAMLYEKFSPAGPVLSIRVCRD LYEKFSPAGPVLSIRVCRDMITRRSLGYAY K F S I R V 1 1 0 0 0 0 0 1 0 1 1 0 0 1 2 2 0 0 0 1 0 0 11 0 1142.6448 Q13310 Q13310 31 41 PABPC4 Polyadenylate-binding protein 4 yes yes 2 0.0027373 107.08 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 5 1 152460000 0 111620000 40832000 3990 1237 4157 16401;16402;16403;16404;16405;16406 13546;13547;13548 13547 2 0 46112000 7919400 FSPDDKYSR FDPMGQQTCSAHPARFSPDDKYSRHRITIK SAHPARFSPDDKYSRHRITIKKRFKVLMTQ R F S S R H 0 1 0 2 0 0 0 0 0 0 0 1 0 1 1 2 0 0 1 0 0 0 9 1 1113.5091 Q9NPE3 Q9NPE3 35 43 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 2 0.029628 99.139 By matching By MS/MS 10 0 2 1 1 6142800 0 1002200 5140600 3991 2026 4158 16407;16408 13549 13549 1 0 5070300 11243000 FSPFPVQDRPESSLVFK PQEDATASPPRQKDKFSPFPVQDRPESSLV PFPVQDRPESSLVFKDTLRTPPRERSGAGS K F S F K D 0 1 0 1 0 1 1 0 0 0 1 1 0 3 3 3 0 0 0 2 0 0 17 1 1979.0153 Q9UQ35 Q9UQ35 1187 1203 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.00073944 80.488 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 18643000 0 8195600 10447000 3992 2219 4159 16409;16410;16411 13550;13551 13550 2 0 4005900 2274300 FSPIPFPPLSYK VAVYTTTVHWLESRRFSPIPFPPLSYKHDT SRRFSPIPFPPLSYKHDTKLLILALERLKE R F S Y K H 0 0 0 0 0 0 0 0 0 1 1 1 0 2 4 2 0 0 1 0 0 0 12 0 1391.7489 Q6P2Q9 Q6P2Q9 822 833 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0083406 96.957 By MS/MS By MS/MS 1 0 2 1 1 33244000 0 13932000 19312000 3993 1490 4160 16412;16413 13552;13553;13554 13552 3 0 6809900 4161000 FSPLTTNLINLLAENGR SIKVKSLNDITAKERFSPLTTNLINLLAEN PLTTNLINLLAENGRLSNTQGVVSAFSTMM R F S G R L 1 1 3 0 0 0 1 1 0 1 4 0 0 1 1 1 2 0 0 0 0 0 17 0 1872.0105 P48047 P48047 101 117 ATP5O ATP synthase subunit O, mitochondrial yes yes 2;3 2.1029E-17 110.29 By MS/MS 7 0 2 2 1237700 0 0 1237700 3994 841 4161 16414;16415 13555;13556 13556 2 0 0 219610 FSPNGEWLASSSADK KFTLAGHTKAVSSVKFSPNGEWLASSSADK FSPNGEWLASSSADKLIKIWGAYDGKFEKT K F S D K L 2 0 1 1 0 0 1 1 0 0 1 1 0 1 1 4 0 1 0 0 0 0 15 0 1594.7264 P61964 P61964 53 67 WDR5 WD repeat-containing protein 5 yes yes 2 8.5411E-05 155.24 By MS/MS 6 0.816 1 1 1 3 49436000 0 0 49436000 3995 1001 4162 16416;16417;16418 13557;13558 13558 2 0 0 7265700 FSPNSSNPIIVSCGWDK TVQDESHSEWVSCVRFSPNSSNPIIVSCGW PNSSNPIIVSCGWDKLVKVWNLANCKLKTN R F S D K L 0 0 2 1 1 0 0 1 0 2 0 1 0 1 2 4 0 1 0 1 0 0 17 0 1906.8883 P63244 P63244 156 172 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 0.00020637 98.942 By matching By MS/MS 6.33 0.471 2 1 1 2 21572000 1118300 0 20454000 3996 1068 4163 16419;16420;16421 13559 13559 1 1489000 0 3169200 FSPNTSQFLLVSSWDTSVR FKLNQPPEDGISSVKFSPNTSQFLLVSSWD TSQFLLVSSWDTSVRLYDVPANSMRLKYQH K F S V R L 0 1 1 1 0 1 0 0 0 0 2 0 0 2 1 5 2 1 0 2 0 0 19 0 2170.0695 O43684 O43684 22 40 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 0.00023864 94.728 By MS/MS By matching 6 0 2 1 1 3279600 0 1895400 1384200 3997 209 4164 16422;16423 13560 13560 1 0 656120 207090 FSPVATASYR LLMHCVKGIGKDHAKFSPVATASYRLLPDI KDHAKFSPVATASYRLLPDITLLEPVEGEA K F S Y R L 2 1 0 0 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 1 0 0 10 0 1097.5506 O15160 O15160 225 234 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes yes 2 0.00050318 128.12 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 25499000 0 6291400 19207000 3998 171 4165 16424;16425 13561;13562 13562 2 0 2177900 2679100 FSQAVILSQLFPLESIR LPFVPGRVPPSSFSRFSQAVILSQLFPLES QAVILSQLFPLESIRQPRLFPGYPNLHFPL R F S I R Q 1 1 0 0 0 2 1 0 0 2 3 0 0 2 1 3 0 0 0 1 0 0 17 0 1947.0829 Q99935 Q99935 78 94 PROL1 Proline-rich protein 1;Opiorphin yes yes 2;3 9.7569E-06 135.58 By MS/MS 6.57 2.32 1 1 1 2 2 7 7501800 7501800 0 0 3999 1869 4166 16426;16427;16428;16429;16430;16431;16432 13563;13564;13565;13566;13567 13563 5 5525300 0 0 FSQELLSNGELNHLPLK FQGEPKKPPMNGYQKFSQELLSNGELNHLP QELLSNGELNHLPLKERMVEIGSRWQRISQ K F S L K E 0 0 2 0 0 1 2 1 1 0 5 1 0 1 1 2 0 0 0 0 0 0 17 0 1938.0211 P17480 P17480 578 594 UBTF Nucleolar transcription factor 1 yes yes 2;3 2.4651E-13 177.42 By MS/MS By MS/MS 2.33 0.471 4 2 2 4 130740000 0 13173000 117570000 4000 584 4167 16433;16434;16435;16436;16437;16438 13568;13569;13570;13571;13572 13572 5 0 5931900 24404000 FSQELLSNGELNHLPLKER FQGEPKKPPMNGYQKFSQELLSNGELNHLP LLSNGELNHLPLKERMVEIGSRWQRISQSQ K F S E R M 0 1 2 0 0 1 3 1 1 0 5 1 0 1 1 2 0 0 0 0 0 0 19 1 2223.1648 P17480 P17480 578 596 UBTF Nucleolar transcription factor 1 yes yes 4 0.00037337 73.688 By MS/MS 2 0 1 1 6383100 0 6383100 0 4001 584 4168 16439 13573 13573 1 0 2874400 0 FSQLAEAYEVLSDEVK YHPDTNKDDPKAKEKFSQLAEAYEVLSDEV SQLAEAYEVLSDEVKRKQYDAYGSAGFDPG K F S V K R 2 0 0 1 0 1 3 0 0 0 2 1 0 1 0 2 0 0 1 2 0 0 16 0 1826.8938 Q96EY1 Q96EY1 135 150 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2;3 3.5771E-05 132.99 By MS/MS 4.67 0.471 1 2 3 10475000 0 0 10475000 4002 1778 4169 16440;16441;16442 13574;13575 13574 2 0 0 1538200 FSQLAEAYEVLSDEVKR YHPDTNKDDPKAKEKFSQLAEAYEVLSDEV QLAEAYEVLSDEVKRKQYDAYGSAGFDPGA K F S K R K 2 1 0 1 0 1 3 0 0 0 2 1 0 1 0 2 0 0 1 2 0 0 17 1 1982.9949 Q96EY1 Q96EY1 135 151 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 1.4728E-05 123.02 By MS/MS 5 0 1 1 5775500 0 0 5775500 4003 1778 4170 16443 13576 13576 1 0 0 805580 FSQMLQDKPLR KPKSGRVWKDRSKKRFSQMLQDKPLRTSWQ SKKRFSQMLQDKPLRTSWQRKMKERQERKL R F S L R T 0 1 0 1 0 2 0 0 0 0 2 1 1 1 1 1 0 0 0 0 0 0 11 1 1361.7126 Q9H6F5 Q9H6F5 254 264 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2;3 1.8302E-05 141.93 By MS/MS By MS/MS 3.33 1.15 1 1 2 4 1 4 5 112770000 0 35588000 77187000 4004 1986 4171;4172 16444;16445;16446;16447;16448;16449;16450;16451;16452 13577;13578;13579;13580;13581;13582 13580 690 6 0 12187000 12938000 FSSCGGGGGSFGAGGGFGSR TTSSSTRRSGGGGGRFSSCGGGGGSFGAGG GGGGSFGAGGGFGSRSLVNLGGSKSISISV R F S S R S 1 1 0 0 1 0 0 10 0 0 0 0 0 3 0 4 0 0 0 0 0 0 20 0 1764.7274 P04264;CON__P04264 P04264 46 65 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.6943E-186 297.16 By MS/MS By MS/MS By MS/MS 5.56 3.14 5 3 2 3 2 3 3 4 2 5 13 8 11 596210000 349490000 29881000 216830000 + 4005 413 4173 16453;16454;16455;16456;16457;16458;16459;16460;16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471;16472;16473;16474;16475;16476;16477;16478;16479;16480;16481;16482;16483;16484 13583;13584;13585;13586;13587;13588;13589;13590;13591;13592;13593;13594;13595;13596;13597;13598;13599;13600;13601;13602;13603;13604;13605;13606;13607;13608;13609;13610;13611;13612;13613;13614;13615;13616;13617;13618;13619;13620;13621;13622;13623;13624;13625;13626;13627;13628;13629;13630 13623 48 367690000 28570000 56366000 FSSELEQIELHNSIR SKKDACELIERYLNRFSSELEQIELHNSIR FSSELEQIELHNSIRDRQGRRHCSRETVIK R F S I R D 0 1 1 0 0 1 3 0 1 2 2 0 0 1 0 3 0 0 0 0 0 0 15 0 1800.9006 Q96EY4 Q96EY4 85 99 TMA16 Translation machinery-associated protein 16 yes yes 2;3 8.2284E-108 267.17 By matching By MS/MS 7 0 3 1 2 48255000 0 1717800 46537000 4006 1779 4174 16485;16486;16487 13631;13632 13632 2 0 986350 8257700 FSSQELILR NWQTAFNRQAHHTDKFSSQELILRRGQNFQ AHHTDKFSSQELILRRGQNFQVLMIMNKGL K F S L R R 0 1 0 0 0 1 1 0 0 1 2 0 0 1 0 2 0 0 0 0 0 0 9 0 1091.5975 Q08188 Q08188 25 33 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.00042158 122.74 By MS/MS 5 0 1 1 6692100 6692100 0 0 4007 1181 4175 16488 13633 13633 1 5361200 0 0 FSSSGDFLVAGVGQEHR LLCDIPLVGFINSLKFSSSGDFLVAGVGQE SSGDFLVAGVGQEHRLGRWWRIKEARNSVC K F S H R L 1 1 0 1 0 1 1 3 1 0 1 0 0 2 0 3 0 0 0 2 0 0 17 0 1791.854 O43818 O43818 429 445 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 3 0.0012628 72.583 By MS/MS By MS/MS 4 0 2 1 1 34264000 0 10952000 23312000 4008 214 4176 16489;16490 13634;13635 13634 2 0 3634600 3807600 FSSSGGGGGGGRFSSSSGYGGGSSR GGLGSGGSIRSSYSRFSSSGGGGGGGRFSS GRFSSSSGYGGGSSRVCGRGGGGSFGYSYG R F S S R V 0 2 0 0 0 0 0 11 0 0 0 0 0 2 0 9 0 0 1 0 0 0 25 1 2197.9373 P35527 P35527 35 59 KRT9 Keratin, type I cytoskeletal 9 yes yes 3 1.6404E-37 177.5 By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 9 88052000 88052000 0 0 + 4009 750 4177 16491;16492;16493;16494;16495;16496;16497;16498;16499 13636;13637;13638;13639;13640 13638 5 114620000 0 0 FSSSIENSDSPVR TKPPLDHNASATDYKFSSSIENSDSPVRSI YKFSSSIENSDSPVRSILKSQAWQPLVEGS K F S V R S 0 1 1 1 0 0 1 0 0 1 0 0 0 1 1 5 0 0 0 1 0 0 13 0 1423.6579 O95425 O95425 911 923 SVIL Supervillin yes yes 2 0.00032408 128.81 By MS/MS 1 0 1 1 11416000 0 0 11416000 4010 325 4178 16500 13641 13641 1 0 0 2459700 FSSSSGYGGGSSR YSRFSSSGGGGGGGRFSSSSGYGGGSSRVC GRFSSSSGYGGGSSRVCGRGGGGSFGYSYG R F S S R V 0 1 0 0 0 0 0 4 0 0 0 0 0 1 0 6 0 0 1 0 0 0 13 0 1234.5214 P35527;CON__P35527 P35527 47 59 KRT9 Keratin, type I cytoskeletal 9 yes no 2 3.1524E-45 225.01 By MS/MS By MS/MS By MS/MS 5.44 2.79 4 4 5 4 5 4 6 3 4 4 24 10 9 1086600000 937010000 46279000 103360000 + 4011 750 4179 16501;16502;16503;16504;16505;16506;16507;16508;16509;16510;16511;16512;16513;16514;16515;16516;16517;16518;16519;16520;16521;16522;16523;16524;16525;16526;16527;16528;16529;16530;16531;16532;16533;16534;16535;16536;16537;16538;16539;16540;16541;16542;16543 13642;13643;13644;13645;13646;13647;13648;13649;13650;13651;13652;13653;13654;13655;13656;13657;13658;13659;13660;13661;13662;13663;13664;13665;13666;13667;13668;13669;13670;13671;13672;13673;13674;13675;13676;13677;13678;13679;13680;13681;13682;13683;13684;13685;13686;13687;13688;13689;13690;13691;13692;13693;13694;13695;13696;13697;13698;13699;13700;13701;13702 13700 60 1128200000 33611000 41450000 FSSWEDFEEEHGK LKELWSLLHFIMPEKFSSWEDFEEEHGKGR EKFSSWEDFEEEHGKGREYGYASLHKELEP K F S G K G 0 0 0 1 0 0 4 1 1 0 0 1 0 2 0 2 0 1 0 0 0 0 13 0 1625.6634 O14646 O14646 665 677 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.00011007 152.54 By MS/MS 1 0 1 1 5729600 0 0 5729600 4012 141 4180 16544 13703 13703 1 0 0 1234500 FSTFFDDAPVFR ELKVLVASATMDTARFSTFFDDAPVFRIPG TARFSTFFDDAPVFRIPGRRFPVDIFYTKA R F S F R I 1 1 0 2 0 0 0 0 0 0 0 0 0 4 1 1 1 0 0 1 0 0 12 0 1447.6772 O60231 O60231 560 571 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 2 4.5038E-06 161.28 By MS/MS 2 0 1 1 6793500 0 0 6793500 4013 221 4181 16545 13704 13704 1 0 0 1535200 FSTPEQAAK GSCSYKDFSESRNNRFSTPEQAAKNRIQHP ESRNNRFSTPEQAAKNRIQHPSNVLHFFNA R F S A K N 2 0 0 0 0 1 1 0 0 0 0 1 0 1 1 1 1 0 0 0 0 0 9 0 977.48181 P14866 P14866 485 493 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 0.00045939 119.29 By MS/MS By matching 3.25 0.829 1 1 2 3 1 32422000 0 24499000 7923400 4014 565 4182 16546;16547;16548;16549 13705;13706 13706 2 0 9150900 1294200 FSTSSLLLR FRPKDPYCHPVCANRFSTSSLLLRIRKRTR PVCANRFSTSSLLLRIRKRTRRQKGVLGTE R F S L R I 0 1 0 0 0 0 0 0 0 0 3 0 0 1 0 3 1 0 0 0 0 0 9 0 1022.576 Q9Y5Q8 Q9Y5Q8 79 87 GTF3C5 General transcription factor 3C polypeptide 5 yes yes 2 0.00038036 121.62 By MS/MS 3.5 0.5 1 1 2 9244300 0 9244300 0 4015 2300 4183 16550;16551 13707 13707 1 0 3129400 0 FSVLMQMR YAANPGQLFGRIPMRFSVLMQMRFDGLLGF FGRIPMRFSVLMQMRFDGLLGFPGGFVDRR R F S M R F 0 1 0 0 0 1 0 0 0 0 1 0 2 1 0 1 0 0 0 1 0 0 8 0 1010.5041 Q9BRJ7 Q9BRJ7 48 55 NUDT16L1 Protein syndesmos yes yes 2 3.9278E-05 151.17 By MS/MS By matching 7 0 2 1 1 12307000 0 5797700 6509800 4016 1890 4184 16552;16553 13708 13708 1 0 3329100 1155100 FSVSGEGEGDATYGK VPILVELDGDVNGHKFSVSGEGEGDATYGK FSVSGEGEGDATYGKLTLKFICTTGKLPVP K F S G K L 1 0 0 1 0 0 2 4 0 0 0 1 0 1 0 2 1 0 1 1 0 0 15 0 1502.6525 CON__Q9U6Y5 CON__Q9U6Y5 27 41 yes yes 2 1.4528E-34 212.09 By MS/MS By MS/MS By MS/MS 5.29 0.824 2 10 3 2 2 6 9 385050000 22142000 42680000 320230000 + 4017 101 4185 16554;16555;16556;16557;16558;16559;16560;16561;16562;16563;16564;16565;16566;16567;16568;16569;16570 13709;13710;13711;13712;13713;13714;13715;13716;13717;13718;13719;13720;13721;13722;13723;13724;13725;13726;13727;13728;13729;13730;13731;13732;13733;13734;13735;13736;13737;13738;13739 13709 31 17684000 12677000 45882000 FSVSPVVR TITTFEHAHNMRVMKFSVSPVVRVAVEAKN HNMRVMKFSVSPVVRVAVEAKNPADLPKLV K F S V R V 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 3 0 0 8 0 889.50215 P13639 P13639 499 506 EEF2 Elongation factor 2 yes yes 2 0.00010051 146.94 By MS/MS By MS/MS By MS/MS 3 1.22 1 2 2 2 1 2 3 3 67240000 13414000 31535000 22292000 4018 547 4186 16571;16572;16573;16574;16575;16576;16577;16578 13740;13741;13742;13743;13744 13741 5 15889000 13123000 4099600 FSWAQGTDTILADEMGLGK GTLHPYQMEGLNWLRFSWAQGTDTILADEM QGTDTILADEMGLGKTVQTAVFLYSLYKEG R F S G K T 2 0 0 2 0 1 1 3 0 1 2 1 1 1 0 1 2 1 0 0 0 0 19 0 2038.967 Q14839;Q12873;Q8TDI0 Q14839 739 757 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2 5.4178E-13 172.57 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 33703000 0 5822000 27881000 4019 1321;1662;1205 4187 16579;16580;16581;16582;16583 13745;13746;13747;13748 13747 4 0 2781500 6044200 FSWPFREPVTR LQKCEEILHKIVKYRFSWPFREPVTRDEAE VKYRFSWPFREPVTRDEAEDYYDVITHPMD R F S T R D 0 2 0 0 0 0 1 0 0 0 0 0 0 2 2 1 1 1 0 1 0 0 11 1 1420.7252 Q9UIG0 Q9UIG0 1360 1370 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.0022097 91.937 By MS/MS 1 0 1 1 3548200 0 0 3548200 4020 2164 4188 16584 13749 13749 1 0 0 764510 FTAIIGPNGSGK FKSYKGRQIIGPFQRFTAIIGPNGSGKSNL FQRFTAIIGPNGSGKSNLMDAISFVLGEKT R F T G K S 1 0 1 0 0 0 0 3 0 2 0 1 0 1 1 1 1 0 0 0 0 0 12 0 1160.619 Q14683 Q14683 27 38 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.00035213 128.81 By MS/MS By matching 1.67 0.471 1 2 2 1 10283000 0 8219800 2063200 4021 1312 4189 16585;16586;16587 13750;13751 13750 2 0 3820800 466250 FTAQGLPDLNHSQVYAVK HEVEDVIIKCQLPKRFTAQGLPDLNHSQVY QGLPDLNHSQVYAVKTVLQRPLSLIQGPPG R F T V K T 2 0 1 1 0 2 0 1 1 0 2 1 0 1 1 1 1 0 1 2 0 0 18 0 1987.0163 Q92900 Q92900 474 491 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.01208 47.223 By MS/MS 2 0 1 1 11639000 0 0 11639000 4022 1729 4190 16588 13752 13752 1 0 0 2630100 FTARPLVETIFER DYAFDDSAPNEMVYRFTARPLVETIFERGM YRFTARPLVETIFERGMATCFAYGQTGSGK R F T E R G 1 2 0 0 0 0 2 0 0 1 1 0 0 2 1 0 2 0 0 1 0 0 13 1 1577.8566 O00139 O00139 292 304 KIF2A Kinesin-like protein KIF2A yes yes 3 8.3916E-05 126.71 By MS/MS 1.5 0.5 1 1 2 4625600 0 4625600 0 4023 104 4191 16589;16590 13753 13753 1 0 2100900 0 FTAVEDQYYCVDCYK CFVCVTCSKKLAGQRFTAVEDQYYCVDCYK FTAVEDQYYCVDCYKNFVAKKCAGCKNPIT R F T Y K N 1 0 0 2 2 1 1 0 0 0 0 1 0 1 0 0 1 0 3 2 0 0 15 0 1959.8019 Q13642 Q13642 200 214 FHL1 Four and a half LIM domains protein 1 yes yes 2 0.00028142 131.37 By MS/MS 6 0 1 1 8395400 0 0 8395400 4024 1265 4192 16591 13754 13754 1 0 0 1256000 FTCTVTHTDLPSPLK GEASICEDDWNSGERFTCTVTHTDLPSPLK FTCTVTHTDLPSPLKQTISRPKGVALHRPD R F T L K Q 0 0 0 1 1 0 0 0 1 0 2 1 0 1 2 1 4 0 0 1 0 0 15 0 1715.8553 P01871;P0DOX6 P01871 301 315 IGHM Ig mu chain C region yes no 3 0.00030899 93.237 By MS/MS 9 0 1 1 3540900 3540900 0 0 4025 385 4193 16592 13755 13755 1 1987500 0 0 FTDADKETEIVK EENFIDANDDEDMEKFTDADKETEIVKKLE MEKFTDADKETEIVKKLETEETVPETDVET K F T V K K 1 0 0 2 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1394.6929 Q03701 Q03701 647 658 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 4.8409E-11 176.78 By MS/MS 1.5 0.5 1 1 2 11857000 0 0 11857000 4026 1157 4194 16593;16594 13756 13756 1 0 0 2641400 FTDEESR GGDQETAKTGKFLKRFTDEESRVFLLDRGN KTGKFLKRFTDEESRVFLLDRGNTRDKEAS R F T S R V 0 1 0 1 0 0 2 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 7 0 882.37193 Q9NYF8 Q9NYF8 340 346 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.048325 77.741 By MS/MS 2.5 0.5 1 1 2 1533900 0 1533900 0 4027 2097 4195 16595;16596 13757;13758 13758 2 0 689260 0 FTDEEVDELYR QEDYLRELLTTMGDRFTDEEVDELYREAPI MGDRFTDEEVDELYREAPIDKKGNFNYIEF R F T Y R E 0 1 0 2 0 0 3 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 11 0 1414.6252 P19105;O14950 P19105 133 143 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 2 7.2892E-14 182.39 By MS/MS By MS/MS 6.83 1.07 1 1 2 2 4 2 59903000 0 41037000 18866000 4028 154 4196 16597;16598;16599;16600;16601;16602 13759;13760;13761;13762 13760 4 0 15139000 3054100 FTDELMEQGLTYK WTLELSPELASMTTRFTDELMEQGLTYKVL TRFTDELMEQGLTYKVLTLVSQIDVNNEFE R F T Y K V 0 0 0 1 0 1 2 1 0 0 2 1 1 1 0 0 2 0 1 0 0 0 13 0 1573.7334 Q92621 Q92621 173 185 NUP205 Nuclear pore complex protein Nup205 yes yes 2 4.521E-34 212.72 By MS/MS 1.5 0.5 1 1 2 18343000 0 0 18343000 4029 1714 4197 16603;16604 13763 13763 1 0 0 3986600 FTDILVR LKKRLQLPVWEYKDRFTDILVRHQSFVLVG PVWEYKDRFTDILVRHQSFVLVGETGSGKT R F T V R H 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 O43143 O43143 146 152 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0025303 135.5 By matching By MS/MS By MS/MS 3.43 1.5 3 1 1 1 1 1 1 5 78693000 2464500 13242000 62986000 4030 186 4198 16605;16606;16607;16608;16609;16610;16611 13764;13765;13766 13764 3 2969400 5963100 11976000 FTEEIPLK KSILEIMHKEAQDIKFTEEIPLKILAHNNF KEAQDIKFTEEIPLKILAHNNFVGRLIGKE K F T L K I 0 0 0 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 8 0 975.5277 O00425 O00425 273 280 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.0053842 99.375 By matching By MS/MS By matching 3.33 0.471 2 1 1 1 1 20969000 1997800 17897000 1073800 4031 121 4199 16612;16613;16614 13767;13768 13768 2 2305000 7629600 175390 FTENDSEKVDR LRNLRGQQRTRLLNKFTENDSEKVDRLMEL LLNKFTENDSEKVDRLMELHFKYLGAMQVA K F T D R L 0 1 1 2 0 0 2 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 11 1 1338.6052 Q8WYA6 Q8WYA6 430 440 CTNNBL1 Beta-catenin-like protein 1 yes yes 3 0.0018767 94.767 By MS/MS 3 0 1 1 5753000 0 0 5753000 4032 1700 4200 16615 13769 13769 1 0 0 1115800 FTEYSMTSSVMR AIADHLFWSEETKSRFTEYSMTSSVMRRNE KSRFTEYSMTSSVMRRNEQLTLHDERFEKF R F T M R R 0 1 0 0 0 0 1 0 0 0 0 0 2 1 0 3 2 0 1 1 0 0 12 0 1437.6268 Q96GA3 Q96GA3 240 251 LTV1 Protein LTV1 homolog yes yes 2 0.00018302 133.23 By MS/MS 4 0 1 1 2210700 0 2210700 0 4033 1788 4201 16616 13770 13770 1 0 733640 0 FTFLYVGDQLHLNPQVAK AEEAASMSVEERKAKFTFLYVGDQLHLNPQ LYVGDQLHLNPQVAKEAGIAAESLGEMAES K F T A K E 1 0 1 1 0 2 0 1 1 0 3 1 0 2 1 0 1 0 1 2 0 0 18 0 2089.0997 O96028 O96028 344 361 WHSC1 Histone-lysine N-methyltransferase NSD2 yes yes 3 0.0073282 53.193 By MS/MS 2 0 1 1 4123800 0 0 4123800 4034 355 4202 16617 13771 13771 1 0 0 931890 FTFPDPPPLSPPVLGLHGVTFGYQGQK EAPELLKRPKEYTVRFTFPDPPPLSPPVLG VLGLHGVTFGYQGQKPLFKNLDFGIDMDSR R F T Q K P 0 0 0 1 0 2 0 4 1 0 3 1 0 3 6 1 2 0 1 2 0 0 27 0 2895.496 Q8NE71 Q8NE71 612 638 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 3 0.00042286 45.125 By MS/MS 2 0 1 1 2359300 0 0 2359300 4035 1638 4203 16618 13772 13772 1 0 0 533160 FTFPDPPPLSPPVLGLHGVTFGYQGQKPLFK EAPELLKRPKEYTVRFTFPDPPPLSPPVLG HGVTFGYQGQKPLFKNLDFGIDMDSRICIV R F T F K N 0 0 0 1 0 2 0 4 1 0 4 2 0 4 7 1 2 0 1 2 0 0 31 1 3380.7962 Q8NE71 Q8NE71 612 642 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 4 2.8791E-33 114.57 By MS/MS 1.5 0.5 1 1 2 9550900 0 0 9550900 4036 1638 4204 16619;16620 13773;13774 13774 2 0 0 2126400 FTITPPTAQVVGVLK QPKNFWNGRWRSEWKFTITPPTAQVVGVLK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS K F T L K I 1 0 0 0 0 1 0 1 0 1 1 1 0 1 2 0 3 0 0 3 0 0 15 0 1569.913 P52907 P52907 179 193 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 2;3 0.0002913 122.69 By MS/MS By MS/MS 6.88 1.45 1 3 2 1 1 5 3 84296000 0 51532000 32764000 4037 914 4205 16621;16622;16623;16624;16625;16626;16627;16628 13775;13776;13777;13778;13779;13780;13781 13775 7 0 18927000 6271400 FTLLPPTSPGDTAPK LKFISGHTSELGDFRFTLLPPTSPGDTAPK FTLLPPTSPGDTAPKYGSYNVFWTSNPGLP R F T P K Y 1 0 0 1 0 0 0 1 0 0 2 1 0 1 4 1 3 0 0 0 0 0 15 0 1540.8137 Q13724 Q13724 242 256 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2 0.036813 63.408 By MS/MS 2 0.816 1 1 1 3 129820000 0 129820000 0 4038 1266 4206 16629;16630;16631 13782 13782 1 0 62816000 0 FTLWWSPTINR TNAQRSGLNQIPNRRFTLWWSPTINRANVY PNRRFTLWWSPTINRANVYVGFQVQLDLTG R F T N R A 0 1 1 0 0 0 0 0 0 1 1 0 0 1 1 1 2 2 0 0 0 0 11 0 1419.7299 Q6P2Q9 Q6P2Q9 1534 1544 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 5.8635E-06 152.38 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 40014000 0 7205100 32808000 4039 1490 4207 16632;16633;16634 13783;13784 13784 2 0 3395900 7069100 FTMVQVWPVR SDVVLELEFEGVKEKFTMVQVWPVRQVRPV GVKEKFTMVQVWPVRQVRPVTEKLPANHPL K F T V R Q 0 1 0 0 0 1 0 0 0 0 0 0 1 1 1 0 1 1 0 3 0 0 10 0 1261.6641 P38606 P38606 203 212 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 1.4434E-08 163.77 By MS/MS 3 0 1 1 4680900 0 0 4680900 4040 773 4208 16635 13785 13785 1 0 0 907880 FTNMLGQPGSTALDLFK SSWMELYPTISSDIRFTNMLGQPGSTALDL NMLGQPGSTALDLFKFYVEDLKARYHDEKK R F T F K F 1 0 1 1 0 1 0 2 0 0 3 1 1 2 1 1 2 0 0 0 0 0 17 0 1838.9237 O75400 O75400 646 662 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 4.3737E-14 183.89 By MS/MS By MS/MS 2.33 0.943 2 3 3 1 6 3 162860000 0 95463000 67394000 4041 258 4209;4210 16636;16637;16638;16639;16640;16641;16642;16643;16644 13786;13787;13788;13789;13790;13791;13792 13787 101 7 0 42623000 14764000 FTPGTFTNQIQAAFR LKFAAATGATPIAGRFTPGTFTNQIQAAFR FTPGTFTNQIQAAFREPRLLVVTDPRADHQ R F T F R E 2 1 1 0 0 2 0 1 0 1 0 0 0 3 1 0 3 0 0 0 0 0 15 0 1697.8526 P08865 P08865 103 117 RPSA 40S ribosomal protein SA yes yes 2;3 2.0622E-89 252.82 By MS/MS By MS/MS By MS/MS 6.19 1.38 2 3 5 3 2 1 1 6 9 590120000 6187800 189400000 394540000 4042 480 4211 16645;16646;16647;16648;16649;16650;16651;16652;16653;16654;16655;16656;16657;16658;16659;16660 13793;13794;13795;13796;13797;13798;13799;13800;13801;13802;13803;13804;13805;13806;13807;13808;13809 13801 16 8239100 64375000 60793000 FTPGTFTNQIQAAFREPR LKFAAATGATPIAGRFTPGTFTNQIQAAFR GTFTNQIQAAFREPRLLVVTDPRADHQPLT R F T P R L 2 2 1 0 0 2 1 1 0 1 0 0 0 3 2 0 3 0 0 0 0 0 18 1 2080.049 P08865 P08865 103 120 RPSA 40S ribosomal protein SA yes yes 2;3 5.6003E-31 197.15 By matching By MS/MS By MS/MS 4.44 1.64 2 1 1 1 4 1 7 1 170200000 5510800 161880000 2813700 4043 480 4212 16661;16662;16663;16664;16665;16666;16667;16668;16669 13810;13811;13812;13813;13814;13815 13813 6 6639900 55516000 420960 FTQAGSEVSALLGR QEGQDVLLFIDNIFRFTQAGSEVSALLGRI RFTQAGSEVSALLGRIPSAVGYQPTLATDM R F T G R I 2 1 0 0 0 1 1 2 0 0 2 0 0 1 0 2 1 0 0 1 0 0 14 0 1434.7467 P06576 P06576 311 324 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 0.003788 92.707 By MS/MS By MS/MS 7 0 2 1 1 5549400 0 2507200 3042200 4044 444 4213 16670;16671 13816;13817 13816 2 0 1439600 539820 FTQDTQPHYIYSPR LTAAMVEFYTMSQERFTQDTQPHYIYSPRE RFTQDTQPHYIYSPREMTRWVRGIFEALRP R F T P R E 0 1 0 1 0 2 0 0 1 1 0 0 0 1 2 1 2 0 2 0 0 0 14 0 1751.8267 Q14204 Q14204 2784 2797 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2;3 4.9203E-08 105.65 By MS/MS By MS/MS 1 0 2 1 1 11386000 0 11386000 0 4045 1292 4214 16672;16673 13818;13819 13819 2 0 5565200 0 FTQISPVWLQLK WNSHGYDVTKVFGSKFTQISPVWLQLKRRG GSKFTQISPVWLQLKRRGREMFEVTGLHDV K F T L K R 0 0 0 0 0 2 0 0 0 1 2 1 0 1 1 1 1 1 0 1 0 0 12 0 1458.8235 Q9BWS9 Q9BWS9 103 114 CHID1 Chitinase domain-containing protein 1 yes yes 2 0.045049 74.424 By MS/MS 5.5 0.5 1 1 2 13541000 0 13541000 0 4046 1926 4215 16674;16675 13820;13821 13820 2 0 4107500 0 FTQLDLEDVQVR KLNKITKFIEENKEKFTQLDLEDVQVREKL KEKFTQLDLEDVQVREKLKHATSKAKKLEK K F T V R E 0 1 0 2 0 2 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1461.7464 Q9NTJ3 Q9NTJ3 390 401 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 4.1344E-24 146.11 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 15193000 0 2980300 12212000 4047 2054 4216 16676;16677;16678 13822;13823;13824 13823 3 0 1342100 2759700 FTQQNYHDR YQIHRIRHFYMRKVKFTQQNYHDRLSQILT YMRKVKFTQQNYHDRLSQILTDFPKLDDIH K F T D R L 0 1 1 1 0 2 0 0 1 0 0 0 0 1 0 0 1 0 1 0 0 0 9 0 1207.537 Q9BZE4 Q9BZE4 53 61 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.0082004 91.318 By MS/MS 3 0 1 1 1343200 0 1343200 0 4048 1941 4217 16679 13825 13825 1 0 572620 0 FTQTSGETTDADKEPAGEDK RVQKVQVKEEPSAVKFTQTSGETTDADKEP GETTDADKEPAGEDKGIKALKESAKQTPAP K F T D K G 2 0 0 3 0 1 3 2 0 0 0 2 0 1 1 1 4 0 0 0 0 0 20 1 2125.9288 P46013 P46013 2742 2761 MKI67 Antigen KI-67 yes yes 3 4.6733E-14 131.71 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 20318000 0 11686000 8631900 4049 821 4218 16680;16681;16682 13826;13827;13828 13828 3 0 5448700 1859900 FTSLRPLLGGIPESGGPDAR ASFILAFGTGVEFVRFTSLRPLLGGIPESG PLLGGIPESGGPDARQGWLAALQDRSILAP R F T A R Q 1 2 0 1 0 0 1 4 0 1 3 0 0 1 3 2 1 0 0 0 0 0 20 1 2039.08 Q8IXM6 Q8IXM6 28 47 NRM Nurim yes yes 3 1.7947E-05 81.003 By matching By MS/MS 7 0 2 1 1 14878000 0 1867500 13011000 4050 1585 4219 16683;16684 13829 13829 1 0 1072300 2308700 FTVETASR RNGYGAKLCNIFSTKFTVETASREYKKMFK CNIFSTKFTVETASREYKKMFKQTWMDNMG K F T S R E 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 1 0 0 8 0 909.4556 P11388 P11388 177 184 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0018003 110.81 By MS/MS By MS/MS 1 0 2 1 1 33046000 0 8384200 24662000 4051 524 4220 16685;16686 13830;13831 13831 2 0 4098100 5313800 FTVLLMPNGPMR NVLYEKEGEFVAQFKFTVLLMPNGPMRITS QFKFTVLLMPNGPMRITSGPFEPDLYKSEM K F T M R I 0 1 1 0 0 0 0 1 0 0 2 0 2 1 2 0 1 0 0 1 0 0 12 0 1374.7152 Q9UQ80 Q9UQ80 321 332 PA2G4 Proliferation-associated protein 2G4 yes yes 2 3.7556E-58 230.09 By MS/MS By MS/MS 4.67 1.41 1 1 1 4 1 1 7 2 245890000 0 160700000 85182000 4052 2220 4221;4222 16687;16688;16689;16690;16691;16692;16693;16694;16695 13832;13833;13834;13835;13836;13837;13838;13839 13836 714;715 7 0 43199000 11957000 FTVNETVLSTK RYRATVIQAFRDMNRFTVNETVLSTKDVLV DMNRFTVNETVLSTKDVLVLLHKWSLIERD R F T T K D 0 0 1 0 0 0 1 0 0 0 1 1 0 1 0 1 3 0 0 2 0 0 11 0 1237.6554 O60287 O60287 1966 1976 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.020586 83.883 By MS/MS By MS/MS 1 0 2 1 1 12232000 0 3489200 8743100 4053 224 4223 16696;16697 13840;13841 13840 2 0 1705500 1883800 FTVTIGEDEREFDKENEVFR ATIRKEQEPDFEEKRFTVTIGEDEREFDKE GEDEREFDKENEVFRDWNSRIPRDVRDTVL R F T F R D 0 2 1 2 0 0 5 1 0 1 0 1 0 3 0 0 2 0 0 2 0 0 20 2 2459.1605 Q86VM9 Q86VM9 330 349 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 4 8.5777E-11 110.77 By MS/MS 1.5 0.5 1 1 2 13765000 0 0 13765000 4054 1553 4224 16698;16699 13842 13842 1 0 0 3081100 FVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG K F V F K A 1 0 0 1 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 1 0 0 8 0 895.48035 P23396 P23396 11 18 RPS3 40S ribosomal protein S3 yes yes 2 0.011278 92.187 By MS/MS By MS/MS 6 1.1 1 2 2 3 2 258470000 0 92333000 166140000 4055 641 4225 16700;16701;16702;16703;16704 13843;13844;13845;13846 13843 4 0 36552000 25619000 FVAELWK LNDNVATLLHQSSDRFVAELWKDVDRIVGL LLHQSSDRFVAELWKDVDRIVGLDQVTGMT R F V W K D 1 0 0 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 0 1 0 0 7 0 891.48544 P35580 P35580 614 620 MYH10 Myosin-10 yes yes 2 0.052032 76.847 By MS/MS 1 0 1 1 20914000 0 0 20914000 4056 753 4226 16705 13847 13847 1 0 0 4506300 FVAPEEVLPFTEGDILEK KLSPQFPNEEDSFHKFVAPEEVLPFTEGDI PEEVLPFTEGDILEKVSVHCPVFDYVPPEL K F V E K V 1 0 0 1 0 0 4 1 0 1 2 1 0 2 2 0 1 0 0 2 0 0 18 0 2032.0405 P49770 P49770 288 305 EIF2B2 Translation initiation factor eIF-2B subunit beta yes yes 2 0.001543 79.886 By MS/MS 6 0 1 1 4258800 0 0 4258800 4057 868 4227 16706 13848 13848 1 0 0 637170 FVDEGSLYGLSIATSR EVYVWDVNSRKCLNRFVDEGSLYGLSIATS VDEGSLYGLSIATSRNGQYVACGSNCGVVN R F V S R N 1 1 0 1 0 0 1 2 0 1 2 0 0 1 0 3 1 0 1 1 0 0 16 0 1713.8574 Q9Y5J1 Q9Y5J1 420 435 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 1.018E-05 154.28 By MS/MS By MS/MS 4.5 1.12 1 1 1 1 1 3 60700000 0 9196700 51503000 4058 2297 4228 16707;16708;16709;16710 13849;13850;13851;13852 13851 4 0 3052100 8561800 FVDGEWYR EGSYAPRRGEFCIAKFVDGEWYRARVEKVE GEFCIAKFVDGEWYRARVEKVESPAKIHVF K F V Y R A 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 1 1 1 0 0 8 0 1070.4821 Q7KZF4 Q7KZF4 740 747 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.003774 103.91 By matching By MS/MS 2 0 2 1 1 22098000 2152500 0 19945000 4059 1518 4229 16711;16712 13853 13853 1 2593500 0 4507200 FVDGLMIHSGDPVNYYVDTAVR VVSGKLRGQRAKSMKFVDGLMIHSGDPVNY HSGDPVNYYVDTAVRHVLLRQGVLGIKVKI K F V V R H 1 1 1 3 0 0 0 2 1 1 1 0 1 1 1 1 1 0 2 4 0 0 22 0 2467.1842 P23396 P23396 152 173 RPS3 40S ribosomal protein S3 yes yes 2;3 1.1804E-92 240.2 By MS/MS By MS/MS 6.09 0.514 1 8 2 4 7 250960000 0 68839000 182120000 4060 641 4230;4231 16713;16714;16715;16716;16717;16718;16719;16720;16721;16722;16723 13854;13855;13856;13857;13858;13859;13860;13861;13862 13860 293 7 0 23617000 27505000 FVDHVFDEQVIDSLTVK EYLYNLGDQYALKMRFVDHVFDEQVIDSLT DHVFDEQVIDSLTVKIILPEGAKNIEIDSP R F V V K I 0 0 0 3 0 1 1 0 1 1 1 1 0 2 0 1 1 0 0 4 0 0 17 0 1990.0048 P04843 P04843 355 371 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 3 0.00052836 82.349 By MS/MS 3 0 1 1 7673500 0 0 7673500 4061 419 4232 16724 13863 13863 1 0 0 1488300 FVDILGLR DHAMIGPEGTDNCHKFVDILGLRTIFPLFM GTDNCHKFVDILGLRTIFPLFMKSPRKIKK K F V L R T 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 0 0 0 1 0 0 8 0 931.5491 Q8WYA6 Q8WYA6 373 380 CTNNBL1 Beta-catenin-like protein 1 yes yes 2 3.9278E-05 151.17 By MS/MS By MS/MS 3.2 0.748 1 2 2 2 3 22854000 0 4685400 18168000 4062 1700 4233 16725;16726;16727;16728;16729 13864;13865;13866 13866 3 0 1737200 3508500 FVDILTNWYVR MAAYRLYTVVPRLVKFVDILTNWYVRMNRR RLVKFVDILTNWYVRMNRRRLKGENGMEDC K F V V R M 0 1 1 1 0 0 0 0 0 1 1 0 0 1 0 0 1 1 1 2 0 0 11 0 1424.7452 P41252 P41252 726 736 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 2 6.1033E-06 152.34 By MS/MS 1.5 0.5 1 1 2 2965000 0 0 2965000 4063 796 4234 16730;16731 13867;13868 13868 2 0 0 670020 FVDLYGAQK VFGLGFPPCLGGPFRFVDLYGAQKIVDRLK LGGPFRFVDLYGAQKIVDRLKKYEAAYGKQ R F V Q K I 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 0 0 9 0 1039.5338 P40939 P40939 720 728 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.041835 71.877 By MS/MS 3 0 1 1 0 0 0 0 4064 789 4235 16732 13869 13869 1 0 0 0 FVEGLPINDFSR LLYSFPVVIKNKTWKFVEGLPINDFSREKM TWKFVEGLPINDFSREKMDLTAKELTEEKE K F V S R E 0 1 1 1 0 0 1 1 0 1 1 0 0 2 1 1 0 0 0 1 0 0 12 0 1392.7038 P40925 P40925 299 310 MDH1 Malate dehydrogenase, cytoplasmic yes yes 2 0.00018302 133.23 By matching By MS/MS 5.67 0.471 1 2 2 1 20398000 0 9381100 11017000 4065 785 4236 16733;16734;16735 13870 13870 1 0 2778700 1648200 FVELPGAEMGK TKARVAPEKKQDVGKFVELPGAEMGKVTVR DVGKFVELPGAEMGKVTVRFPPEASGYLHI K F V G K V 1 0 0 0 0 0 2 2 0 0 1 1 1 1 1 0 0 0 0 1 0 0 11 0 1176.5849 P07814 P07814 187 197 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.010061 91.087 By MS/MS 1 0 1 1 6084900 0 0 6084900 4066 465 4237 16736 13871 13871 1 0 0 1311100 FVFFNIPQIQYK VNYNTHGELGEGARKFVFFNIPQIQYKNPW ARKFVFFNIPQIQYKNPWVQIMMFKNMTPS K F V Y K N 0 0 1 0 0 2 0 0 0 2 0 1 0 3 1 0 0 0 1 1 0 0 12 0 1542.8235 P82663 P82663 47 58 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 2 0.0014762 112.84 By MS/MS 7 0 1 1 10073000 0 0 10073000 4067 1097 4238 16737 13872;13873 13872 2 0 0 1787400 FVFMLSTR RQDSINAYNEPNSTKFVFMLSTRAGGLGIN NEPNSTKFVFMLSTRAGGLGINLATADVVI K F V T R A 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 0 8 0 999.52117 O60264 O60264 553 560 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 7.0318E-06 155.51 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 42162000 0 5279000 36883000 4068 223 4239 16738;16739;16740;16741 13874;13875 13875 2 0 2377200 8217300 FVHSENQHLVSPEALDFLDK FNDILGRHSRKRWERFVHSENQHLVSPEAL NQHLVSPEALDFLDKLLRYDHQSRLTAREA R F V D K L 1 0 1 2 0 1 2 0 2 0 3 1 0 2 1 2 0 0 0 2 0 0 20 0 2324.1437 P68400;Q8NEV1 P68400 284 303 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3;4 0.0014437 60.032 By MS/MS 5 0 2 2 35222000 0 0 35222000 4069 1080 4240 16742;16743 13876;13877 13877 2 0 0 4912900 FVIATSTK PLVLNRVPLRRTHQKFVIATSTKIDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA K F V T K I 1 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 8 0 865.49092 Q02878 Q02878 193 200 RPL6 60S ribosomal protein L6 yes yes 1;2 0.0017858 120.46 By matching By MS/MS By MS/MS 6 2.2 1 1 4 2 2 2 1 6 5 210790000 414820 92968000 117410000 4070 1149 4241 16744;16745;16746;16747;16748;16749;16750;16751;16752;16753;16754;16755 13878;13879;13880;13881;13882;13883 13879 5 755730 31664000 24990000 FVIHCNSPVWGADK VAGAAVSAGHGLPAKFVIHCNSPVWGADKC KFVIHCNSPVWGADKCEELLEKTVKNCLAL K F V D K C 1 0 1 1 1 0 0 1 1 1 0 1 0 1 1 1 0 1 0 2 0 0 14 0 1628.7769 O75367 O75367 272 285 H2AFY Core histone macro-H2A.1 yes yes 2;3 0.00043005 134.49 By MS/MS 5 0 2 2 35744000 0 0 35744000 4071 253 4242 16756;16757 13884;13885 13885 2 0 0 4985700 FVIHCNSPVWGADKCEELLEK VAGAAVSAGHGLPAKFVIHCNSPVWGADKC SPVWGADKCEELLEKTVKNCLALADDKKLK K F V E K T 1 0 1 1 2 0 3 1 1 1 2 2 0 1 1 1 0 1 0 2 0 0 21 1 2530.1985 O75367 O75367 272 292 H2AFY Core histone macro-H2A.1 yes yes 3;4 6.4478E-06 84.324 By MS/MS 5.33 0.471 2 1 3 28240000 0 0 28240000 4072 253 4243 16758;16759;16760 13886;13887 13887 2 0 0 4005200 FVIHHSMSK ATVAFGMGIDKPDVRFVIHHSMSKSMENYY DKPDVRFVIHHSMSKSMENYYQESGRAGRD R F V S K S 0 0 0 0 0 0 0 0 2 1 0 1 1 1 0 2 0 0 0 1 0 0 9 0 1084.5488 P46063 P46063 385 393 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.0024929 103.74 By MS/MS 3 0 1 1 3151200 0 0 3151200 4073 823 4244 16761 13888 13888 1 0 0 611180 FVIKPIDK FPWSEIRNISFNDKKFVIKPIDKKAPDFVF ISFNDKKFVIKPIDKKAPDFVFYAPRLRIN K F V D K K 0 0 0 1 0 0 0 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 8 1 958.58515 P15311;P26038;P35241 P26038 255 262 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2 0.034838 101.41 By MS/MS 3 0 1 1 16036000 0 16036000 0 4074 664;569;742 4245 16762 13889 13889 1 0 6836000 0 FVINYDYPNSSEDYIHR ATDVASRGLDVEDVKFVINYDYPNSSEDYI INYDYPNSSEDYIHRIGRTARSTKTGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 2 0 0 0 1 1 2 0 0 3 1 0 0 17 0 2130.9647 P17844 P17844 412 428 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2;3 5.1552E-37 213.84 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 40745000 0 16374000 24372000 4075 588 4246 16763;16764;16765 13890;13891 13891 2 0 5433800 4486000 FVINYDYPNSSEDYVHR ATDVASRGLDVEDVKFVINYDYPNSSEDYV INYDYPNSSEDYVHRIGRTARSTNKGTAYT K F V H R I 0 1 2 2 0 0 1 0 1 1 0 0 0 1 1 2 0 0 3 2 0 0 17 0 2116.949 Q92841 Q92841 489 505 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2;3 6.2134E-176 300.78 By MS/MS By MS/MS 3.09 1.5 2 2 3 2 1 1 1 10 251070000 0 22328000 228740000 4076 1725 4247 16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776 13892;13893;13894;13895;13896;13897;13898;13899 13897 7 0 9518500 43945000 FVKEPAFEDITLESER PPIELDAVWEDIRERFVKEPAFEDITLESE VKEPAFEDITLESERKRIFKDFMHVLEHEC R F V E R K 1 1 0 1 0 0 4 0 0 1 1 1 0 2 1 1 1 0 0 1 0 0 16 1 1908.9469 O75400 O75400 774 789 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 3 8.1955E-06 123.24 By MS/MS 1.5 0.5 1 1 2 10569000 0 0 10569000 4077 258 4248 16777;16778 13900 13900 1 0 0 2352600 FVLDHEDGLNLNEDLENFLQK QFEYKIQAELAVILKFVLDHEDGLNLNEDL DGLNLNEDLENFLQKAPVPSTCSSTFPEEL K F V Q K A 0 0 3 3 0 1 3 1 1 0 5 1 0 2 0 0 0 0 0 1 0 0 21 0 2501.2074 Q14980 Q14980 133 153 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 1.9714E-14 129.12 By MS/MS 1 0 1 1 19432000 0 0 19432000 4078 1327 4249 16779 13901 13901 1 0 0 4186800 FVLNLIK QIIEEDAALVEIGPRFVLNLIKIFQGSFGG ALVEIGPRFVLNLIKIFQGSFGGPTLYENP R F V I K I 0 0 1 0 0 0 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 845.53747 Q8TDN6 Q8TDN6 236 242 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 0.019765 102.98 By MS/MS By MS/MS 4.57 2.06 1 1 2 2 1 4 3 197360000 0 88135000 109220000 4079 1663 4250 16780;16781;16782;16783;16784;16785;16786 13902;13903;13904;13905 13903 4 0 23731000 15732000 FVLSGANIMCPGLTSPGAK PFILPHQQVDKGAIKFVLSGANIMCPGLTS GANIMCPGLTSPGAKLYPAAVDTIVAIMAE K F V A K L 2 0 1 0 1 0 0 3 0 1 2 1 1 1 2 2 1 0 0 1 0 0 19 0 1918.9645 Q9ULC4 Q9ULC4 104 122 MCTS1 Malignant T-cell-amplified sequence 1 yes yes 2 9.9052E-09 140.08 By MS/MS 7 0 1 1 8663200 0 0 8663200 4080 2188 4251 16787 13906 13906 1 0 0 1537200 FVLSPFSLDLSK SPGGEMEEAELTSWRFVLSPFSLDLSKTKQ SWRFVLSPFSLDLSKTKQQLIPGVPFLLQA R F V S K T 0 0 0 1 0 0 0 0 0 0 3 1 0 2 1 3 0 0 0 1 0 0 12 0 1351.7388 CON__ENSEMBL:ENSBTAP00000007350 CON__ENSEMBL:ENSBTAP00000007350 362 373 yes yes 2 0.038523 76.143 By matching By MS/MS 3.33 0.471 2 1 1 2 3382300 1237700 2144600 0 + 4081 25 4252 16788;16789;16790 13907;13908 13907 2 1428100 758190 0 FVMDIQDR SLVPATPENIQEASKFVMDIQDRGMTNIND NIQEASKFVMDIQDRGMTNINDALLRGISM K F V D R G 0 1 0 2 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 8 0 1022.4855 CON__Q0V8M9 CON__Q0V8M9 350 357 yes yes 2 0.0017273 111.82 By matching By MS/MS 7 0 2 1 1 5001400 0 882100 4119300 + 4082 75 4253 16791;16792 13909 13909 1 0 506510 730950 FVMEVEVDGQK KYELISETGGSHDKRFVMEVEVDGQKFQGA HDKRFVMEVEVDGQKFQGAGSNKKVAKAYA R F V Q K F 0 0 0 1 0 1 2 1 0 0 0 1 1 1 0 0 0 0 0 3 0 0 11 0 1279.6118 Q12906;Q96SI9 Q12906 555 565 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2 4.4863E-05 145.72 By MS/MS 2 0 1 1 16491000 0 0 16491000 4083 1211;1834 4254 16793 13910;13911;13912;13913 13911 4 0 0 3726700 FVMKPPQVVR MREKNPDMVAGEKRKFVMKPPQVVRVGTKK GEKRKFVMKPPQVVRVGTKKTSFVNFTDIC K F V V R V 0 1 0 0 0 1 0 0 0 0 0 1 1 1 2 0 0 0 0 3 0 0 10 1 1199.6849 P20042 P20042 202 211 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2;3 0.010446 89.142 By MS/MS By MS/MS 5.17 1.14 1 2 5 2 2 3 9 161480000 0 32755000 128730000 4084 613 4255;4256 16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805 13914;13915;13916;13917;13918;13919;13920;13921 13916 266 8 0 9609900 18818000 FVMQEEFSR GEIPVVAIRTAKGEKFVMQEEFSRDGKALE TAKGEKFVMQEEFSRDGKALERFLQDYFDG K F V S R D 0 1 0 0 0 1 2 0 0 0 0 0 1 2 0 1 0 0 0 1 0 0 9 0 1171.5332 P30101 P30101 336 344 PDIA3 Protein disulfide-isomerase A3 yes yes 2 4.1399E-07 155.75 By matching By MS/MS By MS/MS 4 0 3 1 1 1 39720000 4619700 7188900 27912000 4085 711 4257 16806;16807;16808 13922;13923 13923 2 3604100 2385700 4558900 FVNDTLR KNCAKGVDDQKKDKRFVNDTLRSEFHKKFM DDQKKDKRFVNDTLRSEFHKKFMEKYIK__ R F V L R S 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 863.45012 Q9P013 Q9P013 210 216 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2 0.015134 111.28 By matching By MS/MS 6 0 2 1 1 6618900 1672500 0 4946400 4086 2109 4258 16809;16810 13924 13924 1 2226900 0 740040 FVNDYDKDNDGR TANEDPEWILVEKDRFVNDYDKDNDGRLDP KDRFVNDYDKDNDGRLDPQELLPWVVPNNQ R F V G R L 0 1 2 4 0 0 0 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 12 1 1456.6219 Q14257 Q14257 235 246 RCN2 Reticulocalbin-2 yes yes 2;3 0.0004623 144.28 By matching By MS/MS 5.6 0.8 3 1 1 1 4 38502000 0 891950 37610000 4087 1296 4259 16811;16812;16813;16814;16815 13925;13926;13927 13925 3 0 229920 5421800 FVNLFPEVKPTIQDVLR CSVPTRALLLSTYIKFVNLFPEVKPTIQDV NLFPEVKPTIQDVLRSDSQLRNADVELQQR K F V L R S 0 1 1 1 0 1 1 0 0 1 2 1 0 2 2 0 1 0 0 3 0 0 17 1 2014.1251 O94973 O94973 547 563 AP2A2 AP-2 complex subunit alpha-2 yes yes 3 0.00067608 82.007 By MS/MS 2 0 1 1 5133200 0 0 5133200 4088 306 4260 16816 13928 13928 1 0 0 1160000 FVNLISER GTDELRLLYGMALVRFVNLISERKTKFAKV YGMALVRFVNLISERKTKFAKVPLKCLAQE R F V E R K 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 8 0 976.53418 Q9Y4W2 Q9Y4W2 122 129 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.0013449 117.1 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 29777000 0 11675000 18101000 4089 2289 4261 16817;16818;16819 13929;13930 13929 2 0 5070100 3510800 FVNVVPTFGK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN QYNRRFVNVVPTFGKKKGPNANS_______ R F V G K K 0 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 10 0 1106.6124 P62861 P62861 42 51 FAU 40S ribosomal protein S30 yes yes 2 0.00042271 118.18 By MS/MS By MS/MS By MS/MS 9 0.756 2 3 2 1 3 3 942690000 14317000 372480000 555890000 4090 1042 4262 16820;16821;16822;16823;16824;16825;16826 13931;13932;13933;13934;13935;13936;13937;13938 13933 8 8036200 940010000 188680000 FVNVVPTFGKK KKTGRAKRRMQYNRRFVNVVPTFGKKKGPN YNRRFVNVVPTFGKKKGPNANS________ R F V K K K 0 0 1 0 0 0 0 1 0 0 0 2 0 2 1 0 1 0 0 3 0 0 11 1 1234.7074 P62861 P62861 42 52 FAU 40S ribosomal protein S30 yes yes 2;3 0.0047363 107.15 By MS/MS 9.2 0.748 1 2 2 5 45434000 0 45434000 0 4091 1042 4263 16827;16828;16829;16830;16831 13939;13940;13941;13942 13942 4 0 199000000 0 FVPAEMGTHTVSVK EAEIVEGENHTYCIRFVPAEMGTHTVSVKY RFVPAEMGTHTVSVKYKGQHVPGSPFQFTV R F V V K Y 1 0 0 0 0 0 1 1 1 0 0 1 1 1 1 1 2 0 0 3 0 0 14 0 1501.7599 P21333 P21333 2202 2215 FLNA Filamin-A yes yes 2 0.0040597 91.313 By MS/MS 1 0 1 1 6367600 0 6367600 0 4092 623 4264 16832 13943 13943 1 0 3112400 0 FVPLLPGNR PQTECRHKSIELFYKFVPLLPGNRSPNLWL IELFYKFVPLLPGNRSPNLWLKDVLKEEGV K F V N R S 0 1 1 0 0 0 0 1 0 0 2 0 0 1 2 0 0 0 0 1 0 0 9 0 1011.5866 P78527 P78527 1194 1202 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0010954 109.63 By MS/MS 1 0 1 1 28789000 0 0 28789000 4093 1089 4265 16833 13944 13944 1 0 0 6203100 FVPQEMGPHTVAVK AAEIVEGEDSAYSVRFVPQEMGPHTVAVKY RFVPQEMGPHTVAVKYRGQHVPGSPFQFTV R F V V K Y 1 0 0 0 0 1 1 1 1 0 0 1 1 1 2 0 1 0 0 3 0 0 14 0 1538.7915 Q14315 Q14315 2278 2291 FLNC Filamin-C yes yes 2;3 0.002024 102.53 By MS/MS 1 0 2 2 25637000 0 25637000 0 4094 1298 4266 16834;16835 13945;13946 13946 2 0 12531000 0 FVQLEGAHPLEK PSFQVKELALSALLKFVQLEGAHPLEKSKW LLKFVQLEGAHPLEKSKWEGNYLFPRELFK K F V E K S 1 0 0 0 0 1 2 1 1 0 2 1 0 1 1 0 0 0 0 1 0 0 12 0 1366.7245 Q9BVI4 Q9BVI4 125 136 NOC4L Nucleolar complex protein 4 homolog yes yes 2;3 0.010779 93.096 By matching By MS/MS By MS/MS 4.29 0.881 1 4 1 1 2 2 3 50522000 11859000 17001000 21662000 4095 1914 4267 16836;16837;16838;16839;16840;16841;16842 13947;13948;13949 13949 3 12922000 5642000 3375700 FVQNVTSDLQLAAEFAAK SCPASPRGAGSSSYRFVQNVTSDLQLAAEF NVTSDLQLAAEFAAKAASEQQADTSGGDSP R F V A K A 4 0 1 1 0 2 1 0 0 0 2 1 0 2 0 1 1 0 0 2 0 0 18 0 1951.0051 P85037 P85037 268 285 FOXK1 Forkhead box protein K1 yes yes 2 3.2332E-08 115.12 By MS/MS 3 0 1 1 6780600 0 0 6780600 4096 1115 4268 16843 13950 13950 1 0 0 1315100 FVSELWK LNDNIATLLHQSSDKFVSELWKDVDRIIGL LLHQSSDKFVSELWKDVDRIIGLDQVAGMS K F V W K D 0 0 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 7 0 907.48035 P35579 P35579 607 613 MYH9 Myosin-9 yes yes 2 0.019593 103.29 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 125620000 0 101340000 24283000 4097 752 4269 16844;16845;16846;16847 13951;13952 13951 2 0 49260000 5232100 FVSFLGR QPPIDNIIRAGLIPKFVSFLGRTDCSPIQF IRAGLIPKFVSFLGRTDCSPIQFESAWALT K F V G R T 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 0 0 1 0 0 7 0 824.45447 P52292 P52292 124 130 KPNA2 Importin subunit alpha-1 yes yes 2 0.00010017 159.75 By MS/MS By MS/MS 4.25 1.09 1 2 1 2 2 62101000 0 35815000 26287000 4098 903 4270 16848;16849;16850;16851 13953;13954;13955 13954 3 0 12054000 4271200 FVSSPQTIVELFFQEVAR SVLELTDSGALMANRFVSSPQTIVELFFQE SPQTIVELFFQEVARKHIISHLFSQPKAPL R F V A R K 1 1 0 0 0 2 2 0 0 1 1 0 0 3 1 2 1 0 0 3 0 0 18 0 2096.0942 Q12769 Q12769 815 832 NUP160 Nuclear pore complex protein Nup160 yes yes 2;3 3.1711E-09 135.08 By MS/MS 1.5 0.5 2 2 4 10191000 0 0 10191000 4099 1196 4271 16852;16853;16854;16855 13956;13957 13957 2 0 0 2292600 FVSSSSSGGYGGGYGGVLTASDGLLAGNEK HGGSGGRGVSVSSARFVSSSSSGGYGGGYG GVLTASDGLLAGNEKLTMQNLNDRLASYLD R F V E K L 2 0 1 1 0 0 1 9 0 0 3 1 0 1 0 6 1 0 2 2 0 0 30 0 2793.3093 CON__P08727 CON__P08727 52 81 yes yes 3 2.8167E-50 147.17 By MS/MS By MS/MS 5 0 2 1 1 78134000 0 34164000 43970000 + 4100 51 4272 16856;16857 13958;13959 13958 2 0 8806500 6133000 FVSTTYSGVTR SSGGVKSSGGSSSVKFVSTTYSGVTR____ SSVKFVSTTYSGVTR_______________ K F V T R - 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 2 3 0 1 2 0 0 11 0 1216.6088 P04264;CON__P04264 P04264 634 644 KRT1 Keratin, type II cytoskeletal 1 yes no 2 0.0063905 98.249 By MS/MS 1 0 1 1 15524000 15524000 0 0 + 4101 413 4273 16858 13960 13960 1 15524000 0 0 FVTDLLLHFIK RTFNEPGSPIVKSAKFVTDLLLHFIKDQTC KSAKFVTDLLLHFIKDQTCYNIIPLYNSMK K F V I K D 0 0 0 1 0 0 0 0 1 1 3 1 0 2 0 0 1 0 0 1 0 0 11 0 1344.7806 Q8WWQ0 Q8WWQ0 1251 1261 PHIP PH-interacting protein yes yes 2;3 0.017281 85.731 By MS/MS 1 0 2 2 8111400 0 0 8111400 4102 1690 4274 16859;16860 13961;13962 13962 2 0 0 1747700 FVTDSNAVVQLK EKSPEWSKFLGLIKKFVTDSNAVVQLKGLE IKKFVTDSNAVVQLKGLEAALVYVENAHVA K F V L K G 1 0 1 1 0 1 0 0 0 0 1 1 0 1 0 1 1 0 0 3 0 0 12 0 1319.7085 Q14008 Q14008 56 67 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00032403 129.38 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 93485000 0 24393000 69092000 4103 1279 4275 16861;16862;16863;16864 13963;13964;13965;13966 13965 4 0 11578000 15061000 FVTSNTQELGK AQKMGRKDPEQEVEKFVTSNTQELGKDKWL EVEKFVTSNTQELGKDKWLCPLSGKKFKGP K F V G K D 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 2 0 0 1 0 0 11 0 1222.6194 Q9BXP5 Q9BXP5 700 710 SRRT Serrate RNA effector molecule homolog yes yes 2 5.9285E-06 113.66 By MS/MS 2 0 1 1 0 0 0 0 4104 1929 4276 16865 13967 13967 1 0 0 0 FVTSTSDHFVEGQTVAAK SGLSGLAPKAIMSDKFVTSTSDHFVEGQTV STSDHFVEGQTVAAKVTNVDEEKQRMLLSL K F V A K V 2 0 0 1 0 1 1 1 1 0 0 1 0 2 0 2 3 0 0 3 0 0 18 0 1922.9374 Q14690 Q14690 765 782 PDCD11 Protein RRP5 homolog yes yes 2;3 8.2617E-115 267.93 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 81006000 0 12003000 69002000 4105 1314 4277 16866;16867;16868;16869 13968;13969;13970 13970 3 0 5866900 14988000 FVTVEELLETAR SSPQRVQRPHSSPPRFVTVEELLETARGVT PPRFVTVEELLETARGVTNMALAHEIVVNG R F V A R G 1 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 2 0 0 2 0 0 12 0 1405.7453 Q9NUJ3 Q9NUJ3 60 71 TCP11L1 T-complex protein 11-like protein 1 yes yes 2 0.0044017 104.52 By MS/MS 4 0 1 1 2718300 0 0 2718300 4106 2059 4278 16870 13971 13971 1 0 0 443980 FVVDGDTPLIENGK VYKILAAILHLGNLKFVVDGDTPLIENGKV KFVVDGDTPLIENGKVVSIIAELLSTKTDM K F V G K V 0 0 1 2 0 0 1 2 0 1 1 1 0 1 1 0 1 0 0 2 0 0 14 0 1502.7617 O94832 O94832 282 295 MYO1D Unconventional myosin-Id yes yes 2 0.00040736 125.74 By matching By MS/MS 2 0 2 1 1 4899100 1892600 3006500 0 4107 299 4279 16871;16872 13972 13972 1 2280300 1353900 0 FVVTAPPAR ______________________________ ______________________________ R F V A R N 2 1 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 2 0 0 9 0 956.54435 Q9UFW8 Q9UFW8 4 12 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 2 0.023029 80.229 By MS/MS 7 0 1 1 7529100 0 7529100 0 4108 2141 4280 16873 13973;13974 13973 2 0 4323300 0 FVYVWDTTSR WSPDGSKIAAGSADRFVYVWDTTSRRILYK GSADRFVYVWDTTSRRILYKLPGHAGSINE R F V S R R 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 1 2 1 1 2 0 0 10 0 1272.6139 Q96DI7 Q96DI7 308 317 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2 3.112E-16 176.09 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 72266000 0 11144000 61122000 4109 1767 4281 16874;16875;16876 13975;13976;13977 13977 3 0 3857800 8726100 FWESPETVSQLDSVR GLAVYRRKDGGPATKFWESPETVSQLDSVR FWESPETVSQLDSVRVWLGKHYKKYVHADA K F W V R V 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 1 1 0 2 0 0 15 0 1778.8475 Q92922 Q92922 42 56 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2 1.6957E-25 204.17 By MS/MS 2 0 1 1 6675300 0 0 6675300 4110 1731 4282 16877 13978 13978 1 0 0 1508500 FWEVISDEHGIDPTGTYHGDSDLQLDR VHIQAGQCGNQIGAKFWEVISDEHGIDPTG PTGTYHGDSDLQLDRISVYYNEATGGKYVP K F W D R I 0 1 0 5 0 1 2 3 2 2 2 0 0 1 1 2 2 1 1 1 0 0 27 0 3101.4003 P07437 P07437 20 46 TUBB Tubulin beta chain yes yes 3;4 9.0467E-40 155.73 By MS/MS By MS/MS 4 2.14 1 1 1 1 2 1 1 6 240560000 0 19986000 220570000 4111 462 4283 16878;16879;16880;16881;16882;16883;16884 13979;13980;13981;13982;13983;13984;13985 13981 7 0 5151700 36078000 FWEVISDEHGIDPTGTYHGDSDLQLER VHLQAGQCGNQIGAKFWEVISDEHGIDPTG PTGTYHGDSDLQLERINVYYNEATGGKYVP K F W E R I 0 1 0 4 0 1 3 3 2 2 2 0 0 1 1 2 2 1 1 1 0 0 27 0 3115.4159 P68371;P04350 P68371 20 46 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 3;4 2.6148E-44 174.31 By MS/MS By MS/MS 3.56 1.57 1 2 1 2 2 1 1 8 852050000 0 18796000 833250000 4112 1079;414 4284 16885;16886;16887;16888;16889;16890;16891;16892;16893 13986;13987;13988;13989 13988 4 0 4845000 134070000 FWHDTCFR KPIGADSKEVHYKNRFWHDTCFRCAKCLHP EVHYKNRFWHDTCFRCAKCLHPLANETFVA R F W F R C 0 1 0 1 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 8 0 1167.492 Q13642 Q13642 60 67 FHL1 Four and a half LIM domains protein 1 yes yes 2 0.00010051 146.94 By MS/MS 6 0 1 1 14413000 0 0 14413000 4113 1265 4285 16894 13990 13990 1 0 0 2156400 FWSFFLR RLGIGQSQEMNTLFRFWSFFLRDHFNKKMY QEMNTLFRFWSFFLRDHFNKKMYEEFKQLA R F W L R D 0 1 0 0 0 0 0 0 0 0 1 0 0 3 0 1 0 1 0 0 0 0 7 0 1001.5123 Q6PKG0;Q659C4 Q6PKG0 918 924 LARP1;LARP1B La-related protein 1;La-related protein 1B yes no 2 0.00024492 153.67 By MS/MS By MS/MS 2.8 1.72 1 2 1 1 1 4 6319800 0 2114100 4205800 4114 1497 4286 16895;16896;16897;16898;16899 13991;13992;13993;13994 13993 4 0 951990 818250 FWSLEDGLNR FDGLLGFPGGFVDRRFWSLEDGLNRVLGLG FVDRRFWSLEDGLNRVLGLGLGCLRLTEAD R F W N R V 0 1 1 1 0 0 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 10 0 1235.5935 Q9BRJ7 Q9BRJ7 71 80 NUDT16L1 Protein syndesmos yes yes 2 3.2704E-07 160.11 By matching By MS/MS 7 0 2 1 1 15690000 0 814270 14876000 4115 1890 4287 16900;16901 13995 13995 1 0 467560 2639600 FWYFVSQLK RMRIFAPNHVVAKSRFWYFVSQLKKMKKSS VVAKSRFWYFVSQLKKMKKSSGEIVYCGQV R F W L K K 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 1 0 1 1 1 0 0 9 0 1216.6281 Q02543 Q02543 44 52 RPL18A 60S ribosomal protein L18a yes yes 2 0.032784 76.478 By matching By MS/MS 6.5 1.71 1 1 1 1 1 1 1 5 164720000 0 792690 163920000 4116 1147 4288 16902;16903;16904;16905;16906;16907 13996;13997 13996 2 0 263070 28934000 FYALSASFEPFSNK DEEKDKGLQTSQDARFYALSASFEPFSNKG RFYALSASFEPFSNKGQTLVVQFTVKHEQN R F Y N K G 2 0 1 0 0 0 1 0 0 0 1 1 0 3 1 3 0 0 1 0 0 0 14 0 1606.7668 P27797 P27797 74 87 CALR Calreticulin yes yes 2 0.00039358 133.07 By matching By MS/MS By MS/MS 4.83 0.898 3 1 2 1 3 2 33540000 2154500 9651300 21734000 4117 682 4289 16908;16909;16910;16911;16912;16913 13998;13999 13999 2 1680900 3068200 3519500 FYDDAIVSQK PRDIDAFWLQRQLSRFYDDAIVSQKKADEV RQLSRFYDDAIVSQKKADEVLEILKTASDD R F Y Q K K 1 0 0 2 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 1 0 0 10 0 1184.5714 O75643 O75643 275 284 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 8.2354E-07 154.28 By MS/MS By MS/MS 1 0 2 1 1 106650000 0 47496000 59155000 4118 277 4290 16914;16915 14000;14001 14000 2 0 23215000 12746000 FYEDNGQLDDAR KATGKPHTLWVAFAKFYEDNGQLDDARVIL FAKFYEDNGQLDDARVILEKATKVNFKQVD K F Y A R V 1 1 1 3 0 1 1 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 12 0 1441.611 Q9HCS7 Q9HCS7 404 415 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.0014846 112.75 By MS/MS By matching 2.5 0.5 1 1 1 1 5775000 0 2270300 3504700 4119 2014 4291 16916;16917 14002 14002 1 0 1022300 679740 FYEEVHDLER ALKNLQVKCAQIEAKFYEEVHDLERKYAVL QIEAKFYEEVHDLERKYAVLYQPLFDKRFE K F Y E R K 0 1 0 1 0 0 3 0 1 0 1 0 0 1 0 0 0 0 1 1 0 0 10 0 1335.6095 Q99733;P55209 P55209 95 104 NAP1L4;NAP1L1 Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1 no no 2;3 0.00049537 135.71 By matching By MS/MS 5.36 1.49 1 3 2 2 2 1 1 10 281950000 3124800 0 278830000 4120 940;1862 4292 16918;16919;16920;16921;16922;16923;16924;16925;16926;16927;16928 14003;14004;14005;14006;14007 14004 5 2437900 0 43421000 FYEQFSK ELFTELAEDKENYKKFYEQFSKNIKLGIHE EDKENYKKFYEQFSKNIKLGIHEDSQNRKK K F Y S K N 0 0 0 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 1 0 0 0 7 0 947.43888 P07900 P07900 437 443 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.071548 72.138 By MS/MS 2 0 1 1 4497000 0 4497000 0 4121 466 4293 16929 14008 14008 1 0 2025100 0 FYEQMNGPVAGASR KIWFDKFKYDDAERRFYEQMNGPVAGASRQ RFYEQMNGPVAGASRQENGASVILRDIARA R F Y S R Q 2 1 1 0 0 1 1 2 0 0 0 0 1 1 1 1 0 0 1 1 0 0 14 0 1525.6984 P29692 P29692 25 38 EEF1D Elongation factor 1-delta yes yes 2 1.3867E-07 171.62 By matching By MS/MS By MS/MS 6 0 4 1 1 2 38953000 2398500 6286500 30268000 4122 702 4294;4295 16930;16931;16932;16933 14009;14010;14011 14010 3 3193600 2176200 4528500 FYEQVVQAIQR KRKGNCSQHDRALERFYEQVVQAIQRHIHF ALERFYEQVVQAIQRHIHFDVVKCILVASP R F Y Q R H 1 1 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 0 1 2 0 0 11 0 1379.7197 Q9BRX2 Q9BRX2 185 195 PELO Protein pelota homolog yes yes 2 2.8302E-07 159.37 By MS/MS 5 0 1 1 6837100 0 6837100 0 4123 1893 4296 16934 14012 14012 1 0 1762400 0 FYFENLLSK PEALGNLVEGMDFHKFYFENLLSKNSKPIH GMDFHKFYFENLLSKNSKPIHTTILNPHVH K F Y S K N 0 0 1 0 0 0 1 0 0 0 2 1 0 2 0 1 0 0 1 0 0 0 9 0 1159.5914 Q13555 Q13555 477 485 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes yes 2 0.062506 67.897 By MS/MS 4 0 1 1 6410400 0 0 6410400 4124 1258 4297 16935 14013 14013 1 0 0 1047000 FYFLEAYNAK LPECVQVYSMGGPNRFYFLEAYNAKSKSFE GGPNRFYFLEAYNAKSKSFEDPPNHARSPG R F Y A K S 2 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 0 0 2 0 0 0 10 0 1264.6128 P26358 P26358 1083 1092 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 6.979E-07 155.75 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 24704000 0 3406400 21297000 4125 667 4298 16936;16937;16938;16939 14014;14015;14016 14015 3 0 1534000 4622000 FYGDLMEK IAGIDLKQQKREQSRFYGDLMEKRRTLEEK QKREQSRFYGDLMEKRRTLEEKEQEEARLR R F Y E K R 0 0 0 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 0 0 0 8 0 1001.4528 Q9BUQ8 Q9BUQ8 319 326 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.051917 72.485 By MS/MS 2 0 1 1 8126300 0 0 8126300 4126 1909 4299 16940 14017 14017 1 0 0 1836400 FYGRDYEYNR GYRNFYDRYRGDYDRFYGRDYEYNRYRDYY GDYDRFYGRDYEYNRYRDYYRQYNRDWQSY R F Y N R Y 0 2 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 10 1 1381.6051 Q1KMD3 Q1KMD3 701 710 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 3 0.056428 49.5 By MS/MS 2 0 1 1 3160000 0 3160000 0 4127 1404 4300 16941 14018 14018 1 0 1423000 0 FYIAQWFR DENTETDPSLVFSRKFYIAQWFRDTTLETE SLVFSRKFYIAQWFRDTTLETEKAMKSQKD K F Y F R D 1 1 0 0 0 1 0 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 8 0 1129.5709 Q6KC79 Q6KC79 1675 1682 NIPBL Nipped-B-like protein yes yes 2 6.9883E-05 149.06 By MS/MS 1.5 0.5 1 1 2 5848800 0 0 5848800 4128 1480 4301 16942;16943 14019 14019 1 0 0 1269300 FYLDTVSALNFAAR SAHSILIANIAPERRFYLDTVSALNFAARS RFYLDTVSALNFAARSKEVINRPFTNESLQ R F Y A R S 3 1 1 1 0 0 0 0 0 0 2 0 0 2 0 1 1 0 1 1 0 0 14 0 1586.8093 Q14807 Q14807 351 364 KIF22 Kinesin-like protein KIF22 yes yes 2 3.9821E-26 137.98 By MS/MS 3 0 1 1 0 0 0 0 4129 1320 4302 16944 14020 14020 1 0 0 0 FYLENLEQMVK QKLREFEEGLVSQYKFYLENLEQMVKDWKQ SQYKFYLENLEQMVKDWKQRKLKKSNVVSL K F Y V K D 0 0 1 0 0 1 2 0 0 0 2 1 1 1 0 0 0 0 1 1 0 0 11 0 1412.701 Q8WTT2 Q8WTT2 307 317 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.053107 73.067 By matching By MS/MS 2.5 0.5 1 1 1 1 12021000 0 4968000 7052900 4130 1670 4303 16945;16946 14021 14021 1 0 2237200 1367900 FYLPGTSRPPIIVSEFR HNHADERVLQALMKRFYLPGTSRPPIIVSE LPGTSRPPIIVSEFRNEIYDVRHRAAYHPD R F Y F R N 0 2 0 0 0 0 1 1 0 2 1 0 0 2 3 2 1 0 1 1 0 0 17 1 1978.0676 Q96SB8 Q96SB8 552 568 SMC6 Structural maintenance of chromosomes protein 6 yes yes 2;3 1.9327E-06 123.02 By MS/MS By MS/MS 2 0 3 1 2 18324000 0 4141600 14182000 4131 1833 4304 16947;16948;16949 14022;14023;14024 14023 3 0 1865000 3204900 FYMYELLK DFKQLYQILTDFDIRFYMYELLKALDYCHS LTDFDIRFYMYELLKALDYCHSKGIMHRDV R F Y L K A 0 0 0 0 0 0 1 0 0 0 2 1 1 1 0 0 0 0 2 0 0 0 8 0 1105.5518 P19784 P19784 136 143 CSNK2A2 Casein kinase II subunit alpha yes yes 2 0.033452 77.058 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 19586000 0 5079000 14507000 4132 612 4305 16950;16951;16952;16953 14025;14026 14025 2 0 1309200 2090800 FYNLVLLPR TRIFASNLKERMAQRFYNLVLLPRVRDDVA ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL R F Y P R V 0 1 1 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 1 1 0 0 9 0 1133.6597 Q13895 Q13895 249 257 BYSL Bystin yes yes 2 9.4889E-08 162.07 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 27653000 0 13458000 14195000 4133 1276 4306 16954;16955;16956;16957;16958 14027;14028;14029 14027 2 0 3652200 2007100 FYNNVQGLVPK HGFIIRVKDYGCIVKFYNNVQGLVPKHELS CIVKFYNNVQGLVPKHELSTEYIPDPERVF K F Y P K H 0 0 2 0 0 1 0 1 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1277.6768 Q14690 Q14690 561 571 PDCD11 Protein RRP5 homolog yes yes 2 0.00032843 131.06 By MS/MS By matching 1.5 0.5 1 1 1 1 8574700 0 6526300 2048400 4134 1314 4307 16959;16960 14030 14030 1 0 3189900 462910 FYNQVSTPLLR QRIYGNQDTSVQLKKFYNQVSTPLLRNVQF QLKKFYNQVSTPLLRNVQFNYPQPSVTDVT K F Y L R N 0 1 1 0 0 1 0 0 0 0 2 0 0 1 1 1 1 0 1 1 0 0 11 0 1336.7139 CON__Q9TRI1;P19823 CON__Q9TRI1 489 499 ITIH2 Inter-alpha-trypsin inhibitor heavy chain H2 yes no 2 0.00032718 122.13 By MS/MS 2 0.816 1 1 1 3 14689000 14689000 0 0 + 4135 99 4308 16961;16962;16963 14031;14032 14031 2 16730000 0 0 FYPEDVAEELIQDITQK EVRKENPLQFKFRAKFYPEDVAEELIQDIT PEDVAEELIQDITQKLFFLQVKEGILSDEI K F Y Q K L 1 0 0 2 0 2 3 0 0 2 1 1 0 1 1 0 1 0 1 1 0 0 17 0 2036.9943 P15311 P15311 84 100 EZR Ezrin yes yes 3 0.071468 26.808 By MS/MS 2.5 0.5 1 1 2 1648800 0 0 1648800 4136 569 4309 16964;16965 14033 14033 1 0 0 358590 FYPEDVSEELIQDITQR DVRKESPLLFKFRAKFYPEDVSEELIQDIT PEDVSEELIQDITQRLFFLQVKEGILNDDI K F Y Q R L 0 1 0 2 0 2 3 0 0 2 1 0 0 1 1 1 1 0 1 1 0 0 17 0 2080.9953 P26038 P26038 84 100 MSN Moesin yes yes 3 0.012313 50.653 By MS/MS 3 0 1 1 3711000 0 0 3711000 4137 664 4310 16966 14034 14034 1 0 0 719760 FYPHTHNMDGFFIAK FRERRFHPSLRSTRRFYPHTHNMDGFFIAK FYPHTHNMDGFFIAKFKKFSNSIPQSQTGN R F Y A K F 1 0 1 1 0 0 0 1 2 1 0 1 1 3 1 0 1 0 1 0 0 0 15 0 1823.8454 P46087 P46087 569 583 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 4 0.071349 27.263 By MS/MS 2 0 1 1 7548500 0 0 7548500 4138 824 4311 16967 14035 14035 1 0 0 1705800 FYPLEIDYGQDEEAVK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K F Y V K K 1 0 0 2 0 1 3 1 0 1 1 1 0 1 1 0 0 0 2 1 0 0 16 0 1914.8887 P09874 P09874 638 653 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 4.4586E-05 116.24 By MS/MS 1.5 0.5 1 1 2 56939000 0 0 56939000 4139 492 4312 16968;16969 14036;14037 14037 2 0 0 12812000 FYPLEIDYGQDEEAVKK GNAWHSKNFTKYPKKFYPLEIDYGQDEEAV PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K F Y K K L 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 P09874 P09874 638 654 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 9.9804E-05 101.39 By MS/MS 2.75 0.829 2 1 1 4 212260000 0 0 212260000 4140 492 4313 16970;16971;16972;16973 14038;14039 14039 2 0 0 47448000 FYQEPNGETPSSLYR CEPQTLCHILGFKFKFYQEPNGETPSSLYR FYQEPNGETPSSLYRVAAVLLQFNLIDLDD K F Y Y R V 0 1 1 0 0 1 2 1 0 0 1 0 0 1 2 2 1 0 2 0 0 0 15 0 1786.8162 Q8NI27 Q8NI27 254 268 THOC2 THO complex subunit 2 yes yes 2 1.943E-11 176.8 By MS/MS 1.5 0.5 1 1 2 11255000 0 0 11255000 4141 1647 4314 16974;16975 14040 14040 1 0 0 2460900 FYQPYSEDTQQQIIR AILIFNNHGKPRLSKFYQPYSEDTQQQIIR FYQPYSEDTQQQIIRETFHLVSKRDENVCN K F Y I R E 0 1 0 1 0 4 1 0 0 2 0 0 0 1 1 1 1 0 2 0 0 0 15 0 1914.9112 Q92572 Q92572 19 33 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 1.7968E-58 232.88 By MS/MS 7 0 1 1 23333000 0 0 23333000 4142 1708 4315 16976 14041 14041 1 0 0 4140200 FYQVPVPLPDR CEPMIGLVPILKGGRFYQVPVPLPDRRRRF KGGRFYQVPVPLPDRRRRFLAMKWMITECR R F Y D R R 0 1 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 0 1 2 0 0 11 0 1329.7081 Q9Y2R9 Q9Y2R9 167 177 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 2 0.039904 76.221 By MS/MS By matching 7 0 2 1 1 16153000 0 4464200 11689000 4143 2248 4316 16977;16978 14042 14042 1 0 2563400 2074100 FYSFLVLK LELCRNTNRKQAAAKFYSFLVLKKQQAIEL RKQAAAKFYSFLVLKKQQAIELTQEEPYSD K F Y L K K 0 0 0 0 0 0 0 0 0 0 2 1 0 2 0 1 0 0 1 1 0 0 8 0 1015.5743 O60216;Q9H4I0 O60216 597 604 RAD21;RAD21L1 Double-strand-break repair protein rad21 homolog;Double-strand-break repair protein rad21-like protein 1 yes no 2 0.0095763 94.262 By matching By MS/MS By MS/MS 3.33 1.89 1 3 2 1 1 1 1 2 6 45161000 899400 3868200 40393000 4144 219 4317 16979;16980;16981;16982;16983;16984;16985;16986;16987 14043;14044;14045;14046;14047;14048 14043 6 1083700 1710600 8012600 FYSVNVDYSK NPEPWNKLGPNDQYKFYSVNVDYSKLKKER NDQYKFYSVNVDYSKLKKERPDF_______ K F Y S K L 0 0 1 1 0 0 0 0 0 0 0 1 0 1 0 2 0 0 2 2 0 0 10 0 1220.5714 O00483 O00483 64 73 NDUFA4 Cytochrome c oxidase subunit NDUFA4 yes yes 2 0.0061218 95.502 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 61711000 0 10282000 51429000 4145 124 4318 16988;16989;16990 14049;14050 14049 2 0 52017000 75145000 FYSVYGSGQR PIQDIWYHEDRIRAKFYSVYGSGQRAFDLF RIRAKFYSVYGSGQRAFDLFNPNFKSTCQR K F Y Q R A 0 1 0 0 0 1 0 2 0 0 0 0 0 1 0 2 0 0 2 1 0 0 10 0 1162.5407 Q9Y3D9 Q9Y3D9 74 83 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 2 6.9596E-14 133.86 By MS/MS By MS/MS 7 0 2 1 1 0 0 0 0 4146 2272 4319 16991;16992 14051;14052 14051 2 0 0 0 FYTEDSPGLK SAGRTTSAGTGGMWRFYTEDSPGLKVGPVP GGMWRFYTEDSPGLKVGPVPVLVMSLLFIA R F Y L K V 0 0 0 1 0 0 1 1 0 0 1 1 0 1 1 1 1 0 1 0 0 0 10 0 1155.5448 P60468 P60468 58 67 SEC61B Protein transport protein Sec61 subunit beta yes yes 2 0.00023946 140.5 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 57087000 0 7220900 49866000 4147 964 4320 16993;16994;16995 14053;14054;14055 14055 3 0 36532000 37361000 FYTIEILK ICPDDAAVIPIKNNRFYTIEILKVE_____ IPIKNNRFYTIEILKVE_____________ R F Y L K V 0 0 0 0 0 0 1 0 0 2 1 1 0 1 0 0 1 0 1 0 0 0 8 0 1025.5797 P12273 P12273 137 144 PIP Prolactin-inducible protein yes yes 2 0.0053842 99.375 By MS/MS By matching By MS/MS 6.54 2.68 1 1 2 2 1 3 1 2 8 3 2 287080000 274550000 4962500 7565000 4148 537 4321 16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006;17007;17008 14056;14057;14058;14059;14060;14061;14062;14063;14064;14065 14056 10 282990000 1847100 8928100 FYTIEILKVE ICPDDAAVIPIKNNRFYTIEILKVE_____ IKNNRFYTIEILKVE_______________ R F Y V E - 0 0 0 0 0 0 2 0 0 2 1 1 0 1 0 0 1 0 1 1 0 0 10 1 1253.6907 P12273 P12273 137 146 PIP Prolactin-inducible protein yes yes 2 6.2268E-28 155.84 By MS/MS By matching 5.2 2.68 1 1 2 1 1 1 2 1 8 2 134960000 131630000 0 3323100 4149 537 4322 17009;17010;17011;17012;17013;17014;17015;17016;17017;17018 14066;14067;14068;14069;14070;14071 14067 6 105150000 0 535370 FYTLIPHDFGMK SQGSSDSQILDLSNRFYTLIPHDFGMKKPP SNRFYTLIPHDFGMKKPPLLNNADSVQAKV R F Y M K K 0 0 0 1 0 0 0 1 1 1 1 1 1 2 1 0 1 0 1 0 0 0 12 0 1467.7221 P09874 P09874 736 747 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00042158 127.4 By MS/MS By MS/MS By MS/MS 2.52 1.26 5 6 6 3 1 1 10 10 726140000 4633000 161420000 560090000 4150 492 4323;4324 17019;17020;17021;17022;17023;17024;17025;17026;17027;17028;17029;17030;17031;17032;17033;17034;17035;17036;17037;17038;17039 14072;14073;14074;14075;14076;14077;14078;14079;14080;14081;14082;14083;14084;14085;14086;14087;14088;14089 14082 203 18 5582200 71593000 121550000 FYVEDLK NMLGQPGSTALDLFKFYVEDLKARYHDEKK STALDLFKFYVEDLKARYHDEKKIIKDILK K F Y L K A 0 0 0 1 0 0 1 0 0 0 1 1 0 1 0 0 0 0 1 1 0 0 7 0 912.45928 O75400 O75400 663 669 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 0.041006 82.386 By MS/MS 2 0 1 1 21972000 0 0 21972000 4151 258 4325 17040 14090 14090 1 0 0 4965300 FYVHNDIFR MQTFVLAPEGSVANKFYVHNDIFRYQDEVF GSVANKFYVHNDIFRYQDEVFGGFVTEPQE K F Y F R Y 0 1 1 1 0 0 0 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 9 0 1209.5931 Q13283 Q13283 124 132 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 0.00072238 113.71 By matching By MS/MS By MS/MS 3.33 1.43 1 2 4 4 1 1 4 7 324220000 816950 121950000 201460000 4152 1236 4326 17041;17042;17043;17044;17045;17046;17047;17048;17049;17050;17051;17052 14091;14092;14093;14094;14095;14096;14097 14095 7 984330 41105000 35674000 FYVHNDMFR MQTFVLAPEGSVPNKFYVHNDMFRYEDEVF GSVPNKFYVHNDMFRYEDEVFGDSEPELDE K F Y F R Y 0 1 1 1 0 0 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 0 9 0 1227.5495 Q9UN86 Q9UN86 124 132 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2;3 0.0061711 82.452 By matching By MS/MS By MS/MS 2.5 1.26 2 1 1 2 1 1 4 50748000 19109000 3749900 27890000 4153 2203 4327 17053;17054;17055;17056;17057;17058 14098;14099;14100 14099 3 19109000 1244400 5338300 FYVPPTQEDGVDPVEAFAQNVLSK FHQNDDAEVSLMEVRFYVPPTQEDGVDPVE GVDPVEAFAQNVLSKADVIQATGDAICIFR R F Y S K A 2 0 1 2 0 2 2 1 0 0 1 1 0 2 3 1 1 0 1 4 0 0 24 0 2649.2962 Q08945 Q08945 165 188 SSRP1 FACT complex subunit SSRP1 yes yes 2;3 2.3642E-21 152.68 By matching By MS/MS 2.67 0.745 3 2 1 2 4 48036000 0 2498100 45538000 4154 1186 4328 17059;17060;17061;17062;17063;17064 14101;14102;14103;14104 14104 4 0 1124900 8824700 FYYIYNEK YVLPSFEVIVEPTEKFYYIYNEKGLEVTIT IVEPTEKFYYIYNEKGLEVTITARFLYGKK K F Y E K G 0 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 3 0 0 0 8 0 1138.5335 P01024 P01024 242 249 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.0034416 105.04 By MS/MS 9 0 1 1 10268000 10268000 0 0 4155 371 4329 17065 14105 14105 1 5763700 0 0 GAAAAATGQPGTAPAGTPGAPPLAGMAIVK PGSTTEDYNLIVIERGAAAAATGQPGTAPA GTPGAPPLAGMAIVKEEETEAAIGAPPTAT R G A V K E 10 0 0 0 0 1 0 6 0 1 1 1 1 0 5 0 3 0 0 1 0 0 30 0 2571.3479 Q13263 Q13263 525 554 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 6.0644E-33 119.51 By MS/MS By MS/MS 3.8 2.64 2 2 1 3 2 45605000 0 37070000 8535400 4156 1235 4330 17066;17067;17068;17069;17070 14106;14107;14108;14109;14110 14109 5 0 17314000 1790500 GAAEEEQQDSGSEPR RRQLLLQKLLQRRRKGAAEEEQQDSGSEPR GAAEEEQQDSGSEPRGDEDDIPLGPQSNVS K G A P R G 2 1 0 1 0 2 4 2 0 0 0 0 0 0 1 2 0 0 0 0 0 0 15 0 1588.6601 Q9UJV9 Q9UJV9 57 71 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 7.3314E-05 156.48 By MS/MS 3 0 1 1 1823400 0 0 1823400 4157 2171 4331 17071 14111 14111 1 0 0 353650 GAAGRPLELSDFR STPTGISASCRRPIKGAAGRPLELSDFRME IKGAAGRPLELSDFRMEESFSSKYVPKYVP K G A F R M 2 2 0 1 0 0 1 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 13 1 1387.7208 P42167 P42167 369 381 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2;3 0.00057219 130.23 By MS/MS By MS/MS 4.33 0.943 1 3 1 1 2 4 144700000 0 27987000 116710000 4158 799 4332 17072;17073;17074;17075;17076;17077 14112;14113;14114;14115;14116 14114 5 0 9288000 18946000 GAALDVHESEPFSFAQGPLK DEKALAQALKEGRIRGAALDVHESEPFSFA VHESEPFSFAQGPLKDAPNLICTPHTAWYS R G A L K D 3 0 0 1 0 1 2 2 1 0 2 1 0 2 2 2 0 0 0 1 0 0 20 0 2099.0324 P56545 P56545 292 311 CTBP2 C-terminal-binding protein 2 yes yes 2;3 3.1105E-13 138.42 By MS/MS 4.67 0.471 1 2 3 21085000 0 0 21085000 4159 952 4333 17078;17079;17080 14117;14118 14118 2 0 0 3026600 GAAPNVVYTYTGK YMDTLPPTVGDDVGKGAAPNVVYTYTGKRI GKGAAPNVVYTYTGKRIALYIGNLTWWTTD K G A G K R 2 0 1 0 0 0 0 2 0 0 0 1 0 0 1 0 2 0 2 2 0 0 13 0 1339.6772 Q16630 Q16630 67 79 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes yes 2 0.00027302 133.23 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 62537000 0 17345000 45192000 4160 1393 4334 17081;17082;17083 14119;14120 14119 2 0 7394200 8297000 GACEATEEAR ITEDGQGLKGVKRERGACEATEEARNLAFS VKRERGACEATEEARNLAFSLMTRHRPECI R G A A R N 3 1 0 0 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1092.4506 P03243 P03243 108 117 yes yes 2 0.00035554 124.98 By MS/MS 5.33 1.7 1 1 1 3 2641100 0 0 2641100 4161 406 4335 17084;17085;17086 14121;14122;14123;14124 14121 4 0 0 500990 GADFLVTEVENGGSLGSK IYVDDGLISLQVKQKGADFLVTEVENGGSL FLVTEVENGGSLGSKKGVNLPGAAVDLPAV K G A S K K 1 0 1 1 0 0 2 4 0 0 2 1 0 1 0 2 1 0 0 2 0 0 18 0 1778.8687 P14618 P14618 189 206 PKM Pyruvate kinase PKM yes yes 2 2.545E-23 194.7 By matching By MS/MS 4 0 2 1 1 20894000 7846100 0 13048000 4162 559 4336 17087;17088 14125 14125 1 6121300 0 2131200 GADGMILGGPQSDSDTDAQR TFYGRPYKLQVLRVKGADGMILGGPQSDSD ILGGPQSDSDTDAQRMAFEQSSMETSSLEL K G A Q R M 2 1 0 4 0 2 0 4 0 1 1 0 1 0 1 2 1 0 0 0 0 0 20 0 1989.8698 Q8NB90 Q8NB90 197 216 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 9.3157E-14 151.54 By MS/MS 2 0 1 1 3668100 0 0 3668100 4163 1624 4337 17089 14126 14126 1 0 0 828930 GADLNLVDSLGYNALHYSK CEIGSSNAVEALIKKGADLNLVDSLGYNAL NLVDSLGYNALHYSKLSENAGIQSLLLSKI K G A S K L 2 0 2 2 0 0 0 2 1 0 4 1 0 0 0 2 0 0 2 1 0 0 19 0 2049.0167 Q9P0K7 Q9P0K7 208 226 RAI14 Ankycorbin yes yes 3 1.0745E-06 106.57 By MS/MS 2 0 1 1 3992800 0 3992800 0 4164 2115 4338 17090 14127 14127 1 0 1798000 0 GADSELSTVPSVTK HPKKASFQKLNGISKGADSELSTVPSVTKT KGADSELSTVPSVTKTQASSSFQDSSQPAG K G A T K T 1 0 0 1 0 0 1 1 0 0 1 1 0 0 1 3 2 0 0 2 0 0 14 0 1389.6987 P46087 P46087 656 669 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00039253 127.87 By MS/MS 2 0 1 1 33537000 0 0 33537000 4165 824 4339 17091 14128 14128 1 0 0 7578800 GADTAPTLAPEALPSQGEVER GLLLEVEEPGTEEERGADTAPTLAPEALPS TLAPEALPSQGEVEREGESPAAGPPPQELV R G A E R E 4 1 0 1 0 1 3 2 0 0 2 0 0 0 3 1 2 0 0 1 0 0 21 0 2108.0386 Q8IZL8 Q8IZL8 1019 1039 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 2.1294E-22 183.06 By matching By MS/MS 1.33 0.471 2 1 1 2 31941000 0 1959800 29981000 4166 1596 4340 17092;17093;17094 14129;14130 14129 2 0 957900 6679800 GADVWFK KKLLETECPQYIRKKGADVWFKELDINTDG CPQYIRKKGADVWFKELDINTDGAVNFQEF K G A F K E 1 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 7 0 821.40719 P05109 P05109 50 56 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 2 0.026121 95.957 By MS/MS By matching 6.1 3.11 1 1 1 1 1 1 1 1 2 9 1 59750000 51631000 0 8119700 4167 424 4341 17095;17096;17097;17098;17099;17100;17101;17102;17103;17104 14131;14132;14133 14131 3 57787000 0 17759000 GAEAANVTGPDGVPVEGSR GDGETVEFDVVEGEKGAEAANVTGPDGVPV ANVTGPDGVPVEGSRYAADRRRYRRGYYGR K G A S R Y 3 1 1 1 0 0 2 4 0 0 0 0 0 0 2 1 1 0 0 3 0 0 19 0 1781.8544 P16989 P16989 151 169 YBX3 Y-box-binding protein 3 yes yes 2 6.0003E-65 231.69 By MS/MS By MS/MS 3.89 1.73 1 2 2 2 2 5 4 121350000 0 65329000 56018000 4168 581 4342 17105;17106;17107;17108;17109;17110;17111;17112;17113 14134;14135;14136;14137;14138;14139;14140;14141;14142;14143 14136 10 0 21424000 9101800 GAEAANVTGPGGVPVQGSK GDGETVEFDVVEGEKGAEAANVTGPGGVPV ANVTGPGGVPVQGSKYAADRNHYRRYPRRR K G A S K Y 3 0 1 0 0 1 1 5 0 0 0 1 0 0 2 1 1 0 0 3 0 0 19 0 1694.8588 P67809 P67809 119 137 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 2;3 3.0326E-17 182.57 By MS/MS By MS/MS By MS/MS 4.33 1.8 1 1 2 2 3 1 2 1 8 3 459710000 10379000 401030000 48297000 4169 1072 4343 17114;17115;17116;17117;17118;17119;17120;17121;17122;17123;17124;17125 14144;14145;14146;14147;14148;14149;14150;14151;14152;14153;14154;14155;14156 14151 13 8314600 116870000 8324300 GAEADQIIEYLK ______________________________ EQKGAEADQIIEYLKQQVSLLKEKAILQAT K G A L K Q 2 0 0 1 0 1 2 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 0 1348.6874 Q12904 Q12904 15 26 AIMP1 Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2 yes yes 2 0.0016359 111.06 By matching By MS/MS 5.67 0.471 1 2 2 1 14203000 0 7282000 6921000 4170 1209 4344 17126;17127;17128 14157 14157 1 0 2396600 1035500 GAEDDLNTVAAGTMTGMLYK ALLYSAFGVIIEKTRGAEDDLNTVAAGTMT LNTVAAGTMTGMLYKCTGGLRGIARGGLTG R G A Y K C 3 0 1 2 0 0 1 3 0 0 2 1 2 0 0 0 3 0 1 1 0 0 20 0 2056.9445 O14925;Q5SRD1 O14925 150 169 TIMM23;TIMM23B Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B yes no 2 0.0096639 57.804 By MS/MS 7 0 1 1 2736400 0 0 2736400 4171 152 4345 17129 14158 14158 1 0 0 485550 GAEEQLVPR TCVAPLSGVDFQLRRGAEEQLVPRASTSPD DFQLRRGAEEQLVPRASTSPDRVFFRLSAL R G A P R A 1 1 0 0 0 1 2 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 9 0 997.51926 CON__Q2KJF1 CON__Q2KJF1 249 257 yes yes 2 0.037524 75.109 By MS/MS By matching 9.67 0.471 1 2 2 1 5410800 0 2685600 2725200 + 4172 78 4346 17130;17131;17132 14159 14159 1 0 12120000 5960300 GAEEWILTGSYDK PEQCMFHDDWISSIKGAEEWILTGSYDKTS IKGAEEWILTGSYDKTSRIWSLEGKSIMTI K G A D K T 1 0 0 1 0 0 2 2 0 1 1 1 0 0 0 1 1 1 1 0 0 0 13 0 1467.6882 Q9GZL7 Q9GZL7 109 121 WDR12 Ribosome biogenesis protein WDR12 yes yes 2 0.001207 112.13 By matching By MS/MS 4 0.707 1 2 1 2 2 58464000 28873000 0 29591000 4173 1949 4347 17133;17134;17135;17136 14160 14160 1 32335000 0 4490200 GAEGILAPQPPPPQQHQERPGAAAIGSAR PCLGPVAAAGSGLRRGAEGILAPQPPPPQQ QHQERPGAAAIGSARGQSTGKGPPQSPVFE R G A A R G 6 2 0 0 0 4 2 4 1 2 1 0 0 0 6 1 0 0 0 0 0 0 29 1 2900.5005 Q8WWM7 Q8WWM7 72 100 ATXN2L Ataxin-2-like protein yes yes 4 1.9858E-05 53.262 By MS/MS 2 0 1 1 4070700 0 4070700 0 4174 1689 4348 17137 14161 14161 1 0 1833100 0 GAEHITTYTFNTHK NRHFIVPASRFKLLKGAEHITTYTFNTHKA KGAEHITTYTFNTHKAQHTFCKRCGVQSFY K G A H K A 1 0 1 0 0 0 1 1 2 1 0 1 0 1 0 0 4 0 1 0 0 0 14 0 1618.774 Q7Z7K6 Q7Z7K6 197 210 CENPV Centromere protein V yes yes 3 0.00796 65.805 By MS/MS By MS/MS 6 0 2 1 1 64254000 0 19719000 44534000 4175 1538 4349 17138;17139 14162;14163 14162 2 0 6826100 6662800 GAEILEVLHSLPAVR MIALERPDLREKVIKGAEILEVLHSLPAVR GAEILEVLHSLPAVRQYLFSLYECRYSVFF K G A V R Q 2 1 0 0 0 0 2 1 1 1 3 0 0 0 1 1 0 0 0 2 0 0 15 0 1602.9093 Q15008 Q15008 243 257 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 3 0.0015386 77.754 By MS/MS 5 0 1 1 3920400 0 0 3920400 4176 1329 4350 17140 14164 14164 1 0 0 546820 GAEQLAEGGR NSLQLHGLQLRIATRGAEQLAEGGRMVYST RIATRGAEQLAEGGRMVYSTCSLNPIEDEA R G A G R M 2 1 0 0 0 1 2 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 10 0 986.47812 Q08J23 Q08J23 306 315 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 0.064747 78.264 By matching By MS/MS 2.5 0.5 1 1 1 1 5628500 0 1641800 3986800 4177 1187 4351 17141;17142 14165 14165 0 0 739310 773250 GAFASLSELHCDK LDSFCEGLKQLDDLKGAFASLSELHCDKLH LKGAFASLSELHCDKLHVDPENFRLLGNVL K G A D K L 2 0 0 1 1 0 1 1 1 0 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1433.6609 CON__Q3SX09 CON__Q3SX09 138 150 yes yes 2;3 0.00040567 124.67 By MS/MS By matching By MS/MS 9.29 0.7 1 3 3 3 1 3 134700000 27135000 667190 106900000 + 4178 82 4352 17143;17144;17145;17146;17147;17148;17149 14166;14167;14168;14169;14170 14166 5 15417000 3375400 141840000 GAFHRPVLGGFR KLQGQDSERVRAWQRGAFHRPVLGGFRESR WQRGAFHRPVLGGFRESRAAEDGFRKAQKP R G A F R E 1 2 0 0 0 0 0 3 1 0 1 0 0 2 1 0 0 0 0 1 0 0 12 1 1312.7153 Q9UKS6 Q9UKS6 116 127 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes yes 3 0.005167 83.081 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 31988000 0 5373600 26614000 4179 2183 4353 17150;17151;17152 14171;14172;14173 14171 3 0 1385200 4067500 GAFIQLLR PTLAFHASLTNPFGKGAFIQLLRQFGKLHT LTNPFGKGAFIQLLRQFGKLHTDKKQISVG K G A L R Q 1 1 0 0 0 1 0 1 0 1 2 0 0 1 0 0 0 0 0 0 0 0 8 0 916.54944 Q13823 Q13823 292 299 GNL2 Nucleolar GTP-binding protein 2 yes yes 2 8.0457E-06 154.29 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 28655000 0 13935000 14721000 4180 1269 4354 17153;17154;17155;17156;17157 14174;14175;14176;14177 14177 4 0 6263800 3083300 GAFSSVSMSGGAGR RGFSCGSAIVGGGKRGAFSSVSMSGGAGRC RGAFSSVSMSGGAGRCSSGGFGSRSLYNLR R G A G R C 2 1 0 0 0 0 0 4 0 0 0 0 1 1 0 4 0 0 0 1 0 0 14 0 1269.5772 CON__P19013;P19013 CON__P19013 102 115 KRT4 Keratin, type II cytoskeletal 4 yes no 2 0.00048202 136.52 By MS/MS 1 0 1 1 63799000 63799000 0 0 + 4181 61 4355 17158 14178 14178 1 63799000 0 0 GAGAFGYFEVTHDITK HFDRERIPERVVHAKGAGAFGYFEVTHDIT AGAFGYFEVTHDITKYSKAKVFEHIGKKTP K G A T K Y 2 0 0 1 0 0 1 3 1 1 0 1 0 2 0 0 2 0 1 1 0 0 16 0 1711.8206 P04040 P04040 78 93 CAT Catalase yes yes 3 0.011833 53.565 By MS/MS 8.5 0.5 1 1 2 5472100 5472100 0 0 4182 408 4356 17159;17160 14179 14179 1 3798000 0 0 GAGHMVPTDKPLAAFTMFSR GFVKEFSHIAFLTIKGAGHMVPTDKPLAAF VPTDKPLAAFTMFSRFLNKQPY________ K G A S R F 3 1 0 1 0 0 0 2 1 0 1 1 2 2 2 1 2 0 0 1 0 0 20 1 2133.05 P10619 P10619 454 473 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes yes 3 0.0041409 54.253 By matching By MS/MS 7 0 2 1 1 5310100 1517400 0 3792700 4183 513 4357 17161;17162 14180 14180 1 3270400 0 672990 GAGSIAGASASPK KSVEEVASEIQPFLRGAGSIAGASASPKEK LRGAGSIAGASASPKEKYSLVEAKRKKLIS R G A P K E 4 0 0 0 0 0 0 3 0 1 0 1 0 0 1 3 0 0 0 0 0 0 13 0 1072.5513 P15924 P15924 2014 2026 DSP Desmoplakin yes yes 2 0.047864 69.346 By MS/MS 1 0 1 1 3711700 0 3711700 0 4184 572 4358 17163 14181 14181 1 0 1814200 0 GAGSYTIMVLFADQATPTSPIR IRNDNDTFTVKYTPRGAGSYTIMVLFADQA MVLFADQATPTSPIRVKVEPSHDASKVKAE R G A I R V 3 1 0 1 0 1 0 2 0 2 1 0 1 1 2 2 3 0 1 1 0 0 22 0 2295.1569 P21333 P21333 842 863 FLNA Filamin-A yes yes 3 3.6412E-11 103.9 By MS/MS 1 0 1 1 3171500 0 0 3171500 4185 623 4359 17164 14182 14182 1 0 0 683340 GAGTDDHTLIR SIPAYLAETLYYAMKGAGTDDHTLIRVMVS YAMKGAGTDDHTLIRVMVSRSEIDLFNIRK K G A I R V 1 1 0 2 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 0 0 0 11 0 1154.568 P08758 P08758 261 271 ANXA5 Annexin A5 yes yes 2 0.00351 105.1 By MS/MS 6 0 1 1 2824000 0 0 2824000 4186 479 4360 17165 14183 14183 1 0 0 422510 GAGTGGLGLAIEGPSEAK GGLVNKANRFTVETRGAGTGGLGLAIEGPS TGGLGLAIEGPSEAKMSCKDNKDGSCTVEY R G A A K M 3 0 0 0 0 0 2 6 0 1 2 1 0 0 1 1 1 0 0 0 0 0 18 0 1583.8155 Q14315 Q14315 1377 1394 FLNC Filamin-C yes yes 2 7.3202E-05 99.531 By MS/MS 2 0.816 1 1 1 3 26647000 0 26647000 0 4187 1298 4361 17166;17167;17168 14184;14185 14184 2 0 12747000 0 GAGTGGLGLAVEGPSEAK SGTTNKPNKFTVETRGAGTGGLGLAVEGPS TGGLGLAVEGPSEAKMSCMDNKDGSCSVEY R G A A K M 3 0 0 0 0 0 2 6 0 0 2 1 0 0 1 1 1 0 0 1 0 0 18 0 1569.7999 P21333 P21333 1382 1399 FLNA Filamin-A yes yes 2 0.0011435 88.087 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 64566000 2517900 39488000 22561000 4188 623 4362 17169;17170;17171;17172 14186;14187;14188 14188 3 2517900 19140000 4861100 GAGYTFGQDISETFNHANGLTLVSR WSDPDDRGGWGISPRGAGYTFGQDISETFN SETFNHANGLTLVSRAHQLVMEGYNWCHDR R G A S R A 2 1 2 1 0 1 1 4 1 1 2 0 0 2 0 2 3 0 1 1 0 0 25 0 2654.2725 P67775;P62714 P67775 215 239 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 3 6.153E-08 78.758 By MS/MS By MS/MS 6 0 2 1 1 21763000 0 5595100 16168000 4189 1030 4363 17173;17174 14189;14190 14189 2 0 1936800 2418900 GAHSVGLMWWMLAR SPLRYVDIAIPCNNKGAHSVGLMWWMLARE KGAHSVGLMWWMLAREVLRMRGTISREHPW K G A A R E 2 1 0 0 0 0 0 2 1 0 2 0 2 0 0 1 0 2 0 1 0 0 14 0 1613.7959 P08865 P08865 167 180 RPSA 40S ribosomal protein SA yes yes 2;3 8.2296E-08 164.9 By MS/MS By MS/MS 5.6 0.49 2 3 2 3 25875000 0 7304500 18570000 4190 480 4364 17175;17176;17177;17178;17179 14191;14192;14193 14191 3 0 2440200 2728500 GAHTTMADALWR KEQESRLPSHWLKSKGAHTTMADALWRLRD KSKGAHTTMADALWRLRDLMLRDTLNIRQA K G A W R L 3 1 0 1 0 0 0 1 1 0 1 0 1 0 0 0 2 1 0 0 0 0 12 0 1328.6296 Q86U86 Q86U86 1657 1668 PBRM1 Protein polybromo-1 yes yes 2;3 0.0026441 108.43 By MS/MS 1 0 2 2 21224000 0 0 21224000 4191 1545 4365 17180;17181 14194;14195 14194 2 0 0 4573000 GAIDHYVTPVK PITRKSVGHRMGGGKGAIDHYVTPVKAGRL GGGKGAIDHYVTPVKAGRLVVEMGGRCEFE K G A V K A 1 0 0 1 0 0 0 1 1 1 0 1 0 0 1 0 1 0 1 2 0 0 11 0 1198.6346 Q9NX20 Q9NX20 145 155 MRPL16 39S ribosomal protein L16, mitochondrial yes yes 2 0.012005 88.681 By MS/MS By matching 7 0 2 1 1 10488000 0 4878300 5609700 4192 2083 4366 17182;17183 14196 14196 1 0 2801200 995400 GAIEVLIR EALDEETKRRDQMIKGAIEVLIREYSSELN RRDQMIKGAIEVLIREYSSELNAPSQESDS K G A I R E 1 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 8 0 869.53345 P49756 P49756 209 216 RBM25 RNA-binding protein 25 yes yes 2 0.0047021 100.74 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 24852000 0 7653700 17198000 4193 866 4367 17184;17185;17186 14197;14198;14199 14197 3 0 3446600 3868100 GAILTTMLVSR TVECLRKFNARRKLKGAILTTMLVSRNFSA RKLKGAILTTMLVSRNFSAAKSLLNKKSDG K G A S R N 1 1 0 0 0 0 0 1 0 1 2 0 1 0 0 1 2 0 0 1 0 0 11 0 1160.6587 Q13555 Q13555 302 312 CAMK2G Calcium/calmodulin-dependent protein kinase type II subunit gamma yes yes 2 0.028445 79.489 By MS/MS 4 0 1 1 6799100 0 0 6799100 4194 1258 4368 17187 14200 14200 1 0 0 1110500 GAINMGDAFSPAPAGNQGPPPMMGMNMNNR ENREQEMRMGDMGPRGAINMGDAFSPAPAG NQGPPPMMGMNMNNRATIPGPPMGPGPAMG R G A N R A 4 1 5 1 0 1 0 5 0 1 0 0 5 1 5 1 0 0 0 0 0 0 30 0 3044.3184 Q8WXF1 Q8WXF1 400 429 PSPC1 Paraspeckle component 1 yes yes 3 4.0826E-50 144.26 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 25547000 0 14578000 10969000 4195 1695 4369 17188;17189;17190 14201;14202;14203 14203 3 0 5279700 2127400 GAIQLGITHTVGSLSTKPER SGETTYKKTTSSALKGAIQLGITHTVGSLS GITHTVGSLSTKPERDVLMQDFYVVESIFF K G A E R D 1 1 0 0 0 1 1 3 1 2 2 1 0 0 1 2 3 0 0 1 0 0 20 1 2064.1328 Q99755 Q99755 87 106 PIP5K1A Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha yes yes 3 3.5685E-11 116.6 By MS/MS 4 0 1 1 6221400 0 6221400 0 4196 1863 4370 17191 14204 14204 1 0 2064700 0 GALALAQAVQR AFDAVKCTHWAEGGKGALALAQAVQRAAQA EGGKGALALAQAVQRAAQAPSSFQLLYDLK K G A Q R A 4 1 0 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1096.6353 P11586 P11586 794 804 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.05947 63.48 By matching By MS/MS 2.33 0.471 2 1 1 2 13381000 3105600 0 10275000 4197 528 4371 17192;17193;17194 14205 14205 0 3741800 0 2256500 GALALEEK ERDELADEIANSSGKGALALEEKRRLEARI IANSSGKGALALEEKRRLEARIAQLEEELE K G A E K R 2 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 829.45453 P35579 P35579 1717 1724 MYH9 Myosin-9 yes no 2 0.0027738 107.32 By MS/MS 2 0.816 1 1 1 3 71898000 0 71898000 0 4198 752 4372 17195;17196;17197 14206 14206 1 0 34728000 0 GALALEEKR ERDELADEIANSSGKGALALEEKRRLEARI ANSSGKGALALEEKRRLEARIAQLEEELEE K G A K R R 2 1 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 985.55564 P35579 P35579 1717 1725 MYH9 Myosin-9 yes yes 2 4.2747E-23 187.55 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 74920000 0 69493000 5427200 4199 752 4373 17198;17199;17200 14207;14208;14209 14207 3 0 33819000 1169400 GALMLENLQK LAKSGQKSALVKRLKGALMLENLQKHSTPH VKRLKGALMLENLQKHSTPHAAFQPNSQIG K G A Q K H 1 0 1 0 0 1 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 10 0 1115.6009 Q9UKV3 Q9UKV3 104 113 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.0067316 94.806 By MS/MS 1 0 1 1 0 0 0 0 4200 2184 4374 17201 14210 14210 1 0 0 0 GALPLDTVTFYK LLLSAPHGGSGLHTKGALPLDTVTFYKVIP HTKGALPLDTVTFYKVIPKSKFVLVKFDTQ K G A Y K V 1 0 0 1 0 0 0 1 0 0 2 1 0 1 1 0 2 0 1 1 0 0 12 0 1323.7075 P30040 P30040 37 48 ERP29 Endoplasmic reticulum resident protein 29 yes yes 2 0.036892 76.572 By matching By MS/MS 6.67 0.471 1 2 1 2 27422000 0 3770000 23652000 4201 704 4375 17202;17203;17204 14211;14212 14212 2 0 2164800 3956600 GALQGSAWQVSSEDVR ESPTAENARLLAQKRGALQGSAWQVSSEDV ALQGSAWQVSSEDVRWDTFPLGRMPGQTED R G A V R W 2 1 0 1 0 2 1 2 0 0 1 0 0 0 0 3 0 1 0 2 0 0 16 0 1688.8118 Q9Y4W2 Q9Y4W2 631 646 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 7.1838E-13 181.87 By MS/MS By MS/MS 3 0 2 1 1 13721000 0 3056800 10664000 4202 2289 4376 17205;17206 14213;14214 14214 2 0 1303100 2068300 GALQNIIPASTGAAK KTVDGPSGKLWRDGRGALQNIIPASTGAAK GALQNIIPASTGAAKAVGKVIPELNGKLTG R G A A K A 4 0 1 0 0 1 0 2 0 2 1 1 0 0 1 1 1 0 0 0 0 0 15 0 1410.7831 P04406 P04406 201 215 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 0.00028135 145.41 By MS/MS By MS/MS By MS/MS 6 2.87 2 1 1 1 2 3 2 2 1 3 9 6 3 510790000 272710000 102600000 135480000 4203 415 4377 17207;17208;17209;17210;17211;17212;17213;17214;17215;17216;17217;17218;17219;17220;17221;17222;17223;17224 14215;14216;14217;14218;14219;14220;14221;14222;14223;14224;14225;14226;14227;14228;14229;14230;14231;14232;14233;14234;14235 14225 20 311460000 44050000 35761000 GALQYLVPILTQTLTK EQGRPPEHTSKFYAKGALQYLVPILTQTLT ALQYLVPILTQTLTKQDENDDDDDWNPCKA K G A T K Q 1 0 0 0 0 2 0 1 0 1 4 1 0 0 1 0 3 0 1 1 0 0 16 0 1758.0291 Q14974 Q14974 317 332 KPNB1 Importin subunit beta-1 yes yes 2;3 0.0011747 84.605 By MS/MS By MS/MS 2.4 1.02 2 4 2 2 2 8 76067000 0 7284300 68783000 4204 1325 4378 17225;17226;17227;17228;17229;17230;17231;17232;17233;17234 14236;14237;14238;14239;14240;14241;14242;14243;14244;14245;14246 14244 11 0 3280200 13629000 GALTGGYYDTR TMDCITLEGDQVSHRGALTGGYYDTRKSRL VSHRGALTGGYYDTRKSRLELQKDVRKAEE R G A T R K 1 1 0 1 0 0 0 3 0 0 1 0 0 0 0 0 2 0 2 0 0 0 11 0 1172.5462 Q9UQE7 Q9UQE7 662 672 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 1.3219E-09 168.25 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 75763000 0 14713000 61049000 4205 2222 4379 17235;17236;17237 14247;14248;14249 14249 3 0 6625700 13433000 GALTVGITNTVGSSISR ETADTLMGLRYCKERGALTVGITNTVGSSI LTVGITNTVGSSISRETDCGVHINAGPEIG R G A S R E 1 1 1 0 0 0 0 3 0 2 1 0 0 0 0 3 3 0 0 2 0 0 17 0 1631.8842 Q06210 Q06210 458 474 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 yes yes 2 9.7727E-06 116.24 By MS/MS By matching 3.5 0.5 1 1 1 1 6102500 0 1719900 4382600 4206 1168 4380 17238;17239 14250 14250 1 0 733200 715820 GALVVVNDLGGDFK GAGLGRAYALAFAERGALVVVNDLGGDFKG RGALVVVNDLGGDFKGVGKGSLAADKVVEE R G A F K G 1 0 1 2 0 0 0 3 0 0 2 1 0 1 0 0 0 0 0 3 0 0 14 0 1402.7456 P51659 P51659 33 46 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 2 0.01554 76.655 By MS/MS 3 0 1 1 2193200 0 2193200 0 4207 898 4381 17240 14251 14251 1 0 934980 0 GAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTER MGQMAMGGAMGINNRGAMPPAPVPAGTPAP MPDGTLGLTPPTTERFGQAATMEGIGAIGG R G A E R F 5 1 0 1 0 0 1 5 0 0 2 0 3 0 11 0 6 0 0 1 0 0 36 0 3450.6986 Q15233 Q15233 399 434 NONO Non-POU domain-containing octamer-binding protein yes yes 3;4 7.7705E-66 160.23 By MS/MS By MS/MS 3.73 1.25 1 2 5 11 1 1 1 15 7 559020000 0 334230000 224790000 4208 1351 4382;4383;4384 17241;17242;17243;17244;17245;17246;17247;17248;17249;17250;17251;17252;17253;17254;17255;17256;17257;17258;17259;17260;17261;17262 14252;14253;14254;14255;14256;14257;14258;14259;14260;14261;14262;14263;14264;14265;14266;14267;14268;14269;14270;14271;14272;14273;14274;14275;14276;14277;14278;14279;14280;14281;14282;14283;14284;14285;14286;14287 14257 610;611;612 36 0 113270000 38457000 GANFLTQILLR GGVYGWDLKRKIISRGANFLTQILLRPGAS IISRGANFLTQILLRPGASDLTGSFRLYRK R G A L R P 1 1 1 0 0 1 0 1 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1244.7241 O60762 O60762 167 177 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 1.7695E-05 150.36 By MS/MS 6.5 0.5 1 1 2 7758800 0 0 7758800 4209 231 4385 17263;17264 14288 14288 1 0 0 1344300 GANFLTQILLRPGASDLTGSFR GGVYGWDLKRKIISRGANFLTQILLRPGAS ILLRPGASDLTGSFRLYRKEVLEKLIEKCV R G A F R L 2 2 1 1 0 1 0 3 0 1 4 0 0 2 1 2 2 0 0 0 0 0 22 1 2333.2492 O60762 O60762 167 188 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 3 1.7296E-09 95.195 By MS/MS 7 0 1 1 9375200 0 0 9375200 4210 231 4386 17265 14289 14289 1 0 0 1663600 GANLKDYYSR VGASGYGVPGPTWDRGANLKDYYSRKEEQE PTWDRGANLKDYYSRKEEQEVQATLESEEV R G A S R K 1 1 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 2 0 0 0 10 1 1185.5778 Q08211 Q08211 142 151 DHX9 ATP-dependent RNA helicase A yes yes 2 1.1583E-27 153.24 By MS/MS 2 0 1 1 0 0 0 0 4211 1182 4387 17266 14290 14290 1 0 0 0 GANVIAGVWLEEAGQK VRDVAEVDTVRRALRGANVIAGVWLEEAGQ ANVIAGVWLEEAGQKLSIYNALKKDLLPSD R G A Q K L 3 0 1 0 0 1 2 3 0 1 1 1 0 0 0 0 0 1 0 2 0 0 16 0 1640.8522 Q15149 Q15149 3159 3174 PLEC Plectin yes yes 2 7.3246E-05 107.97 By MS/MS 1 0 1 1 4523300 0 4523300 0 4212 1348 4388 17267 14291 14291 1 0 2210900 0 GAPAAAAAAAPPPTPAPPPPPAPVAAAAPAR PRRGATPPAPPRAPRGAPAAAAAAAPPPTP PPPPPAPVAAAAPARAPRAAAAAATAPPSP R G A A R A 15 1 0 0 0 0 0 1 0 0 0 0 0 0 12 0 1 0 0 1 0 0 31 0 2661.4391 Q6SPF0 Q6SPF0 117 147 SAMD1 Atherin yes yes 3 0.00030193 43.612 By MS/MS 3 0 1 1 3690500 0 3690500 0 4213 1502 4389 17268 14292 14292 1 0 1573300 0 GAPAAATAPAPTAHK FKLNRKKLEGGGERRGAPAAATAPAPTAHK GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R G A H K A 7 0 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 15 0 1330.6993 Q92522 Q92522 129 143 H1FX Histone H1x yes yes 2;3 0.00028785 125.72 By MS/MS By MS/MS 6.5 0.5 3 3 2 4 19696000 0 10069000 9626900 4214 1706 4390 17269;17270;17271;17272;17273;17274 14293;14294;14295;14296;14297;14298 14293 6 0 3726300 1576200 GAPPSSNIEDFHGLLPK GPGPLQERSLFEKKRGAPPSSNIEDFHGLL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS R G A P K G 1 0 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 17 0 1777.8999 P43243 P43243 271 287 MATR3 Matrin-3 yes yes 2;3 0.0023517 85.271 By matching By MS/MS By MS/MS 3 1.41 1 4 3 1 1 1 1 2 8 233320000 4611400 69160000 159550000 4215 812 4391 17275;17276;17277;17278;17279;17280;17281;17282;17283;17284;17285 14299;14300;14301;14302;14303;14304;14305;14306;14307;14308;14309;14310 14309 12 5556100 30864000 34323000 GAPVNISSSDLTGR SGMERERKVSMRLHRGAPVNISSSDLTGRQ RGAPVNISSSDLTGRQDTSRMSTSQIPGRV R G A G R Q 1 1 1 1 0 0 0 2 0 1 1 0 0 0 1 3 1 0 0 1 0 0 14 0 1372.6947 P48730 P48730 376 389 CSNK1D Casein kinase I isoform delta yes yes 2 0.0001103 155.26 By MS/MS By MS/MS 5 0 2 1 1 22329000 0 12867000 9462200 4216 848 4392 17286;17287 14311;14312 14311 2 0 3316800 1319800 GAQAAIVVYDITNTDTFAR AGQERYHSLAPMYYRGAQAAIVVYDITNTD AIVVYDITNTDTFARAKNWVKELQRQASPN R G A A R A 4 1 1 2 0 1 0 1 0 2 0 0 0 1 0 0 3 0 1 2 0 0 19 0 2025.0167 P51148 P51148 93 111 RAB5C Ras-related protein Rab-5C yes yes 2 1.2025E-08 116.84 By MS/MS 7 0 1 1 4203400 0 0 4203400 4217 889 4393 17288 14313 14313 1 0 0 745870 GASGTFQLK QRAVERGQLEQITGKGASGTFQLKKSGEKP EQITGKGASGTFQLKKSGEKPLLGGSLMEY K G A L K K 1 0 0 0 0 1 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 907.47633 Q5SSJ5 Q5SSJ5 321 329 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.012227 95.531 By MS/MS 3 0 1 1 0 0 0 0 4218 1445 4394 17289 14314 14314 1 0 0 0 GATEITTTITK AKIQEEGTEVELTGKGATEITTTITKLSFV LTGKGATEITTTITKLSFVTVDSNLRRGIP K G A T K L 1 0 0 0 0 0 1 1 0 2 0 1 0 0 0 0 5 0 0 0 0 0 11 0 1134.6132 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 339 349 yes yes 2 0.00032712 127.4 By MS/MS By matching 2 0.894 2 1 2 2 3 58952000 38065000 0 20888000 + 4219 28 4395 17290;17291;17292;17293;17294 14315;14316 14315 2 43056000 0 4208700 GATGEPEVMEPALEGTGK ______________________________ GEPEVMEPALEGTGKEGKKASSRKRTLAEP R G A G K E 2 0 0 0 0 0 4 4 0 0 1 1 1 0 2 0 2 0 0 1 0 0 18 0 1771.8298 Q9H6R4 Q9H6R4 12 29 NOL6 Nucleolar protein 6 yes yes 2 0.00016566 98.592 By MS/MS 2 0 1 1 3770300 0 3770300 0 4220 1988 4396 17295 14317 14317 1 0 1697800 0 GATQQILDEAER FSGVALGEACTIVLRGATQQILDEAERSLH VLRGATQQILDEAERSLHDALCVLAQTVKD R G A E R S 2 1 0 1 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 12 0 1329.6525 P78371 P78371 377 388 CCT2 T-complex protein 1 subunit beta yes yes 2 8.3704E-05 141.29 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 33655000 0 4492100 29163000 4221 1086 4397 17296;17297;17298 14318;14319 14319 2 0 1490800 4921000 GATVVELFPYAVNPDHYTPYK SMHGAQLVTTLFLPRGATVVELFPYAVNPD LFPYAVNPDHYTPYKTLAMLPGMDLQYVAW R G A Y K T 2 0 1 1 0 0 1 1 1 0 1 1 0 1 3 0 2 0 3 3 0 0 21 0 2380.1739 Q8NAT1 Q8NAT1 358 378 POMGNT2 Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 yes yes 3 0.00057854 65.25 By MS/MS 3 0 1 1 1377600 0 1377600 0 4222 1621 4398 17299 14320 14320 1 0 587270 0 GATYGKPVHHGVNQLK RIRVRRGGRKRPVPKGATYGKPVHHGVNQL ATYGKPVHHGVNQLKFARSLQSVAEERAGR K G A L K F 1 0 1 0 0 1 0 3 2 0 1 2 0 0 1 0 1 0 1 2 0 0 16 1 1704.906 P61313 P61313 78 93 RPL15 60S ribosomal protein L15 yes yes 2;3;4 0.00027072 125.24 By MS/MS By MS/MS 5.5 2.36 2 2 1 2 3 5 5 2 1 1 9 15 512560000 0 138930000 373630000 4223 991 4399 17300;17301;17302;17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313;17314;17315;17316;17317;17318;17319;17320;17321;17322;17323 14321;14322;14323;14324;14325;14326;14327;14328;14329;14330;14331;14332;14333;14334;14335;14336 14335 16 0 74592000 65625000 GAVAEDGDELR ______________________________ RGKKGAVAEDGDELRTEPEAKKSKTAAKKN K G A L R T 2 1 0 2 0 0 2 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1130.5204 P27695 P27695 8 18 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 2 0.017257 85.744 By matching By matching By MS/MS 4.67 0.943 2 1 1 1 1 49990000 38154000 2115100 9720600 4224 680 4400 17324;17325;17326 14337 14337 1 29767000 701940 1454300 GAVAEDGDELRTEPEAK ______________________________ VAEDGDELRTEPEAKKSKTAAKKNDKEAAG K G A A K K 3 1 0 2 0 0 4 2 0 0 1 1 0 0 1 0 1 0 0 1 0 0 17 1 1785.8381 P27695 P27695 8 24 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 3 0.0020295 69.069 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 36607000 0 4229900 32378000 4225 680 4401 17327;17328;17329 14338;14339;14340 14340 3 0 1464300 4696400 GAVAIADAIR QVEVINFGDCLVRSKGAVAIADAIRGGLPK LVRSKGAVAIADAIRGGLPKLKELNLSFCE K G A I R G 4 1 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 955.54508 P46060 P46060 280 289 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.0033383 102.51 By matching By MS/MS By MS/MS 3 0 3 1 1 1 18873000 1754700 6003200 11115000 4226 822 4402 17330;17331;17332 14341;14342 14342 2 2024500 2559200 2155800 GAVAMAETLK LLRVINLNDNTFTEKGAVAMAETLKTLRQV TFTEKGAVAMAETLKTLRQVEVINFGDCLV K G A L K T 3 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 10 0 989.52157 P46060 P46060 252 261 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.020457 85.666 By MS/MS By MS/MS 3 0 2 1 1 11970000 0 0 11970000 4227 822 4403 17333;17334 14343;14344 14344 2 0 0 2321600 GAVDALAAALAHISGASSFEPR VDFFRPSAQRLIEEKGAVDALAAALAHISG AALAHISGASSFEPRSLITSDKGFVTMTLE K G A P R S 7 1 0 1 0 0 1 2 1 1 2 0 0 1 1 3 0 0 0 1 0 0 22 0 2110.0807 Q9BQ39 Q9BQ39 557 578 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2;3;4 1.1093E-20 153.24 By MS/MS By MS/MS 2.75 0.433 1 3 1 3 15859000 0 1981400 13878000 4228 1876 4404 17335;17336;17337;17338 14345;14346;14347;14348 14348 4 0 892240 2691600 GAVDGGLSIPHSTK LARTTTGNKVFGALKGAVDGGLSIPHSTKR KGAVDGGLSIPHSTKRFPGYDSESKEFNAE K G A T K R 1 0 0 1 0 0 0 3 1 1 1 1 0 0 1 2 1 0 0 1 0 0 14 0 1337.6939 P46777 P46777 165 178 RPL5 60S ribosomal protein L5 yes yes 2;3 6.1234E-06 150.46 By MS/MS By MS/MS 5.82 0.833 1 2 6 2 6 5 345450000 0 146340000 199110000 4229 828 4405 17339;17340;17341;17342;17343;17344;17345;17346;17347;17348;17349 14349;14350;14351;14352;14353;14354;14355 14349 7 0 50819000 29812000 GAVEAELDPVEYTLR ______________________________ GAVEAELDPVEYTLRKRLPSRLPRRPNDIY R G A L R K 2 1 0 1 0 0 3 1 0 0 2 0 0 0 1 0 1 0 1 2 0 0 15 0 1660.8308 O75817 O75817 9 23 POP7 Ribonuclease P protein subunit p20 yes yes 2 0.00028234 130.56 By matching By MS/MS 8 0 2 1 1 5130500 0 803340 4327100 4230 284 4406 17350;17351 14356 14356 1 0 365490 663390 GAVEALAAALAHISGATSVDQR ISHFKQSAEKLIEEKGAVEALAAALAHISG AALAHISGATSVDQRSLINSNVGFVTMILQ K G A Q R S 7 1 0 1 0 1 1 2 1 1 2 0 0 0 0 2 1 0 0 2 0 0 22 0 2107.1022 Q9NR30 Q9NR30 606 627 DDX21 Nucleolar RNA helicase 2 yes yes 2;3;4 3.7537E-64 218.63 By MS/MS By MS/MS 2.3 0.9 2 4 3 1 4 6 42083000 0 21468000 20615000 4231 2038 4407 17352;17353;17354;17355;17356;17357;17358;17359;17360;17361 14357;14358;14359;14360;14361;14362 14362 6 0 9378700 4179300 GAVEDVISR TLKKTQPTVINNLKKGAVEDVISRNEIQGR INNLKKGAVEDVISRNEIQGRSAEEAYKQQ K G A S R N 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 2 0 0 9 0 944.49271 O15226 O15226 525 533 NKRF NF-kappa-B-repressing factor yes yes 2 0.035785 73.248 By MS/MS 2 0 1 1 0 0 0 0 4232 174 4408 17362 14363 14363 1 0 0 0 GAVHDVKDVLDSVL KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ KGAVHDVKDVLDSVL_______________ K G A V L - 1 0 0 3 0 0 0 1 1 0 2 1 0 0 0 1 0 0 0 4 0 0 14 1 1465.7777 P81605 P81605 97 110 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 0.0026544 114.83 By MS/MS By MS/MS By MS/MS 5 2.62 4 1 1 2 3 3 3 2 2 12 1 8 3253900000 3093000000 4103500 156770000 4233 1094 4409 17363;17364;17365;17366;17367;17368;17369;17370;17371;17372;17373;17374;17375;17376;17377;17378;17379;17380;17381;17382;17383 14364;14365;14366;14367;14368;14369;14370;14371;14372;14373;14374;14375;14376;14377;14378;14379;14380;14381 14367 18 2449500000 1420500 28494000 GAVIVVSHDAR IESIDALGEAINEYKGAVIVVSHDARLITE NEYKGAVIVVSHDARLITETNCQLWVVEEQ K G A A R L 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1122.6146 Q8NE71 Q8NE71 790 800 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 1.2206E-13 180.44 By MS/MS By MS/MS 2 0 2 1 1 16041000 0 0 16041000 4234 1638 4410 17384;17385 14382;14383 14383 2 0 0 3624900 GAVLAQGQGDGTVSK AGGAERPGPMGEAEKGAVLAQGQGDGTVSK GAVLAQGQGDGTVSKGGRGPGSQHTKEAED K G A S K G 2 0 0 1 0 2 0 4 0 0 1 1 0 0 0 1 1 0 0 2 0 0 15 0 1386.7103 P48382 P48382 527 541 RFX5 DNA-binding protein RFX5 yes yes 2 0.0016701 93.345 By MS/MS 3 0 1 1 2301200 0 0 2301200 4235 842 4411 17386 14384 14384 1 0 0 446330 GAVVVLNMVEASR LQALLLSSNQELQHRGAVVVLNMVEASREI HRGAVVVLNMVEASREIASTLMESEMMEIL R G A S R E 2 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 4 0 0 13 0 1343.7231 Q9H3U1 Q9H3U1 882 894 UNC45A Protein unc-45 homolog A yes yes 2 0.0055359 98.943 By MS/MS 2 0 1 1 3266600 0 3266600 0 4236 1980 4412 17387 14385 14385 1 0 1471000 0 GAVYSMVEFNGK YSDGKLQTVAEKEVKGAVYSMVEFNGKLLA EVKGAVYSMVEFNGKLLASINSTVRLYEWT K G A G K L 1 0 1 0 0 0 1 2 0 0 0 1 1 1 0 1 0 0 1 2 0 0 12 0 1300.6122 Q16531 Q16531 868 879 DDB1 DNA damage-binding protein 1 yes yes 2 0.00037423 128.36 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 13996000 0 5517100 8478600 4237 1387 4413 17388;17389;17390 14386;14387 14387 2 0 2484400 1895600 GAWSNVLR WRKIARDEGGKAFFKGAWSNVLRGMGGAFV GGKAFFKGAWSNVLRGMGGAFVLVLYDEIK K G A L R G 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 8 0 901.477 P05141;P12235;P12236 P05141 273 280 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.00028978 132.72 By matching By MS/MS By MS/MS 5.57 3.42 2 1 2 2 1 2 4 152850000 1735000 38166000 112950000 4238 427;533;534 4414 17391;17392;17393;17394;17395;17396;17397 14388;14389;14390;14391;14392;14393 14388 6 1735000 26199000 41843000 GAYDIFLNAK FQKDILIACRLNQKKGAYDIFLNAKEQNIV LNQKKGAYDIFLNAKEQNIVFNAETYSNLI K G A A K E 2 0 1 1 0 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1110.571 P42704 P42704 1050 1059 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00050789 117.1 By matching By MS/MS By MS/MS 2 0 3 1 1 1 10006000 1127000 3996500 4882300 4239 808 4415 17398;17399;17400 14394;14395 14395 2 1357900 1799700 1103300 GAYIYNALIEFIR FFHELSPGSCFFLPKGAYIYNALIEFIRSE PKGAYIYNALIEFIRSEYRKRGFQEVVTPN K G A I R S 2 1 1 0 0 0 1 1 0 3 1 0 0 1 0 0 0 0 2 0 0 0 13 0 1541.8242 P26639 P26639 349 361 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.0058562 98.04 By MS/MS 2.5 0.5 1 1 2 6050200 0 0 6050200 4240 672 4416 17401;17402 14396 14396 1 0 0 1272400 GCGTVLLSGPR GKILTFDQLALDSPKGCGTVLLSGPRKGRE DSPKGCGTVLLSGPRKGREVYRHFGKAPGT K G C P R K 0 1 0 0 1 0 0 3 0 0 2 0 0 0 1 1 1 0 0 1 0 0 11 0 1115.5757 Q07020 Q07020 133 143 RPL18 60S ribosomal protein L18 yes yes 2 0.061335 64.04 By matching By matching By MS/MS 6.67 0.471 1 2 1 1 1 53057000 3159500 12688000 37209000 4241 1174 4417 17403;17404;17405 14397 14397 0 4207000 7285700 6602500 GCTATLGNFAK LLMMAGIDDCYTSARGCTATLGNFAKATFD TSARGCTATLGNFAKATFDAISKTYSYLTP R G C A K A 2 0 1 0 1 0 0 2 0 0 1 1 0 1 0 0 2 0 0 0 0 0 11 0 1138.5441 P15880 P15880 228 238 RPS2 40S ribosomal protein S2 yes yes 2 0.0073839 96.311 By matching By MS/MS 5.5 0.5 1 1 1 1 14953000 6270600 8682100 0 4242 571 4418 17406;17407 14398 14398 1 5023500 3005400 0 GDADMYDLPK SAASSYSFSDLNSTRGDADMYDLPKKEDAL LNSTRGDADMYDLPKKEDALLYQSKGYNDD R G D P K K 1 0 0 3 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 10 0 1123.4856 P50402 P50402 69 78 EMD Emerin yes yes 2 0.014486 86.136 By matching By matching By MS/MS 5.75 1.09 1 2 1 1 1 2 78623000 2950600 4874100 70798000 4243 878 4419 17408;17409;17410;17411 14399 14399 1 2302000 1687200 10674000 GDADQASNILASFGLSAR NIGSRGPLPLSSQHRGDADQASNILASFGL DQASNILASFGLSARDLDELSRYPEDKITP R G D A R D 4 1 1 2 0 1 0 2 0 1 2 0 0 1 0 3 0 0 0 0 0 0 18 0 1791.8751 P43243 P43243 103 120 MATR3 Matrin-3 yes yes 2;3 6.8274E-157 290.1 By MS/MS By MS/MS 3 1.93 3 5 2 1 2 1 6 8 322070000 0 171340000 150730000 4244 812 4420 17412;17413;17414;17415;17416;17417;17418;17419;17420;17421;17422;17423;17424;17425 14400;14401;14402;14403;14404;14405;14406;14407;14408;14409;14410;14411;14412;14413 14410 14 0 77120000 33392000 GDAMIMEETGK EASSSGVSVLSLCEKGDAMIMEETGKIFKK LCEKGDAMIMEETGKIFKKEKEMKKGIAFP K G D G K I 1 0 0 1 0 0 2 2 0 1 0 1 2 0 0 0 1 0 0 0 0 0 11 0 1180.5104 Q9UQ80 Q9UQ80 52 62 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.0046982 102.06 By matching By MS/MS By MS/MS 4.33 1.05 1 1 1 6 3 3 3 156920000 36662000 9935300 110320000 4245 2220 4421;4422;4423 17426;17427;17428;17429;17430;17431;17432;17433;17434 14414;14415;14416;14417;14418;14419 14419 716 5 40948000 2561000 15388000 GDATVSYEDPPTAK PMIHIYLDKETGKPKGDATVSYEDPPTAKA KGDATVSYEDPPTAKAAVEWFDGKDFQGSK K G D A K A 2 0 0 2 0 0 1 1 0 0 0 1 0 0 2 1 2 0 1 1 0 0 14 0 1449.6624 Q01844 Q01844 411 424 EWSR1 RNA-binding protein EWS yes yes 2 0.00041878 124.1 By MS/MS By MS/MS 3.27 1.6 2 2 2 2 2 1 5 6 162780000 0 55597000 107190000 4246 1141 4424 17435;17436;17437;17438;17439;17440;17441;17442;17443;17444;17445 14420;14421;14422;14423;14424;14425;14426;14427;14428;14429;14430 14422 11 0 21355000 19249000 GDDLLPAGTEDYIHIR IQNLHSFDPFADASKGDDLLPAGTEDYIHI DDLLPAGTEDYIHIRIQQRNGRKTLTTVQG K G D I R I 1 1 0 3 0 0 1 2 1 2 2 0 0 0 1 0 1 0 1 0 0 0 16 0 1783.8741 P41567;O60739 P41567 19 34 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 3 0.0001175 97.223 By MS/MS 8.5 0.5 1 1 2 11945000 0 0 11945000 4247 797 4425 17446;17447 14431 14431 1 0 0 3176200 GDDLQAIKK SKSGQRGSSKSGKLKGDDLQAIKKELTQIK KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K G D K K E 1 0 0 2 0 1 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 9 1 986.53966 P07910 P07910 190 198 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2 0.021833 87.181 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 17804000 0 12264000 5540400 4248 467 4426 17448;17449;17450 14432;14433 14433 2 0 4171000 828900 GDDSEWLK ______________________________ ______________________________ M G D L K L 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 0 0 8 0 948.41888 Q14008 Q14008 2 9 CKAP5 Cytoskeleton-associated protein 5 yes yes 1 0.010455 63.673 By MS/MS 1 0 1 1 5080000 0 0 5080000 4249 1279 4427 17451 14434 14434 0 0 0 1094600 GDDSEWLKLPVDQK ______________________________ MGDDSEWLKLPVDQKCEHKLWKARLSGYEE M G D Q K C 0 0 0 3 0 1 1 1 0 0 2 2 0 0 1 1 0 1 0 1 0 0 14 1 1628.8046 Q14008 Q14008 2 15 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 1.1096E-17 190.26 By MS/MS 1.5 0.5 1 1 2 13195000 0 0 13195000 4250 1279 4428 17452;17453 14435 14435 1 0 0 2875400 GDEELDSLIK KVKRITPRHLQLAIRGDEELDSLIKATIAG QLAIRGDEELDSLIKATIAGGGVIPHIHKS R G D I K A 0 0 0 2 0 0 2 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1117.5503 Q71UI9;P0C0S5 Q71UI9 93 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2 0.0013386 109.48 By MS/MS By MS/MS By MS/MS 8.33 0.943 2 3 3 1 2 3 4 1399600000 53470000 106990000 1239200000 4251 496 4429 17454;17455;17456;17457;17458;17459;17460;17461;17462 14436;14437;14438;14439;14440;14441;14442;14443;14444;14445;14446 14439 10 40034000 51363000 246170000 GDEELDSLIKATIAGGGVIPHIHK KVKRITPRHLQLAIRGDEELDSLIKATIAG KATIAGGGVIPHIHKSLIGKKGQQKTA___ R G D H K S 2 0 0 2 0 0 2 4 2 4 2 2 0 0 1 1 1 0 0 1 0 0 24 1 2469.3227 Q71UI9;P0C0S5 Q71UI9 93 116 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 3;4;5 1.1932E-07 83.905 By MS/MS 7.75 0.433 1 3 4 12614000 0 0 12614000 4252 496 4430 17463;17464;17465;17466 14447;14448;14449 14448 3 0 0 1985100 GDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNK DRPMHVKMDERALPKGDFFPPERPQQLPHG LGPGGQPIDANHLNKGIGMGNIGPAGMGME K G D N K G 1 1 2 2 0 3 1 9 2 2 4 1 1 2 6 0 0 0 0 0 0 0 37 1 3817.9111 P52272 P52272 286 322 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 4;5 1.902E-47 112.81 By MS/MS By MS/MS 3.58 1.41 1 6 10 7 3 3 1 13 18 1020800000 0 335110000 685740000 4253 902 4431;4432 17467;17468;17469;17470;17471;17472;17473;17474;17475;17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489;17490;17491;17492;17493;17494;17495;17496;17497 14450;14451;14452;14453;14454;14455;14456;14457;14458;14459;14460;14461;14462;14463;14464;14465;14466;14467;14468;14469;14470;14471;14472;14473;14474;14475;14476;14477;14478;14479;14480;14481;14482 14456 424 32 0 132550000 130160000 GDFILVGDLMR CNHYNNIMALYLKTKGDFILVGDLMRSVLL LKTKGDFILVGDLMRSVLLLAYKPMEGNFE K G D M R S 0 1 0 2 0 0 0 2 0 1 2 0 1 1 0 0 0 0 0 1 0 0 11 0 1234.638 Q16531 Q16531 918 928 DDB1 DNA damage-binding protein 1 yes yes 2 0.011291 89.08 By MS/MS 2.5 0.5 1 1 2 5699700 0 0 5699700 4254 1387 4433 17498;17499 14483 14483 1 0 0 1255800 GDFLFSSDHLIEMATK FFAVHLKEGSEAASKGDFLFSSDHLIEMAT DFLFSSDHLIEMATKLYRTTLSQTKQKLNI K G D T K L 1 0 0 2 0 0 1 1 1 1 2 1 1 2 0 2 1 0 0 0 0 0 16 0 1809.8607 O43795 O43795 1061 1076 MYO1B Unconventional myosin-Ib yes yes 2;3 0.0072315 76.588 By MS/MS 2 0 2 2 9236700 0 0 9236700 4255 212 4434 17500;17501 14484;14485 14485 2 0 0 2087300 GDFYTAHGEDALLAAR GMPEKPTTTVRLFDRGDFYTAHGEDALLAA DFYTAHGEDALLAAREVFKTQGVIKYMGPA R G D A R E 4 1 0 2 0 0 1 2 1 0 2 0 0 1 0 0 1 0 1 0 0 0 16 0 1705.806 P43246 P43246 40 55 MSH2 DNA mismatch repair protein Msh2 yes yes 3 0.00049472 87.647 By MS/MS 1.5 0.5 1 1 2 27560000 0 0 27560000 4256 813 4435 17502;17503 14486 14486 1 0 0 6155900 GDGPICLVLAPTR LPAIVHINHQPFLERGDGPICLVLAPTREL ERGDGPICLVLAPTRELAQQVQQVAAEYCR R G D T R E 1 1 0 1 1 0 0 2 0 1 2 0 0 0 2 0 1 0 0 1 0 0 13 0 1367.7231 Q92841;P17844 P17844 165 177 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.00044366 122.74 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 53974000 0 9772300 44202000 4257 588;1725 4436 17504;17505 14487;14488 14488 2 0 3243100 8573100 GDGVVLVAPPLR IYKSTKRNIPMLFVRGDGVVLVAPPLRVG_ FVRGDGVVLVAPPLRVG_____________ R G D L R V 1 1 0 1 0 0 0 2 0 0 2 0 0 0 2 0 0 0 0 3 0 0 12 0 1191.6976 P62310 P62310 89 100 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2 0.0073138 98.582 By MS/MS By MS/MS By MS/MS 9 0.577 1 4 1 1 3 2 224990000 6496600 62781000 155710000 4258 1020 4437 17506;17507;17508;17509;17510;17511 14489;14490;14491;14492 14491 4 3646600 60042000 49742000 GDHAWSFLK ______________________________ ______________________________ M G D L K D 1 0 0 1 0 0 0 1 1 0 1 1 0 1 0 1 0 1 0 0 0 0 9 0 1059.5138 P12235 P12235 2 10 SLC25A4 ADP/ATP translocase 1 yes yes 2 0.00036001 113.26 By MS/MS 6 0 1 1 12398000 0 0 12398000 4259 533 4438 17512 14493 14493 1 0 0 1854900 GDILTLLNSTNKDWWK YDYQEKSPREVTMKKGDILTLLNSTNKDWW DILTLLNSTNKDWWKVEVNDRQGFVPAAYV K G D W K V 0 0 2 2 0 0 0 1 0 1 3 2 0 0 0 1 2 2 0 0 0 0 16 1 1902.984 Q13813 Q13813 991 1006 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00026262 128.28 By MS/MS 1 0 1 1 2314700 0 0 2314700 4260 1268 4439 17513 14494 14494 1 0 0 498730 GDINILLIGDPSVAK LGGVERDLENGSHIRGDINILLIGDPSVAK GDINILLIGDPSVAKSQLLRYVLCTAPRAI R G D A K S 1 0 1 2 0 0 0 2 0 3 2 1 0 0 1 1 0 0 0 1 0 0 15 0 1523.8559 P25205 P25205 337 351 MCM3 DNA replication licensing factor MCM3 yes yes 2 0.00040754 79.089 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 8962700 0 0 8962700 4261 655 4440 17514;17515;17516 14495;14496 14495 2 0 0 1873100 GDIWWNPEQLK KKFIYALKAPKSFPKGDIWWNPEQLKEDSR SFPKGDIWWNPEQLKEDSRDYLHLLIGLFE K G D L K E 0 0 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 2 0 0 0 0 11 0 1384.6776 Q9H583 Q9H583 809 819 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.060295 71.349 By MS/MS By matching 1.5 0.5 1 1 1 1 12925000 0 8038100 4887300 4262 1984 4441 17517;17518 14497 14497 1 0 3928900 1104400 GDKVDILYNNIK SLEAHVNGFRFTSVRGDKVDILYNNIKHAL SVRGDKVDILYNNIKHALFQPCDGEMIIVL R G D I K H 0 0 2 2 0 0 0 1 0 2 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1390.7456 Q9Y5B9 Q9Y5B9 694 705 SUPT16H FACT complex subunit SPT16 yes yes 2;3 4.6738E-07 166.69 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 166670000 0 17422000 149250000 4263 2296 4442 17519;17520;17521;17522;17523;17524 14498;14499;14500;14501;14502 14500 5 0 7845200 32705000 GDLLQVVQEAFEK GGKTQEVPTACPDWRGDLLQVVQEAFEKEQ WRGDLLQVVQEAFEKEQEMQGVELQPRLSG R G D E K E 1 0 0 1 0 2 2 1 0 0 2 1 0 1 0 0 0 0 0 2 0 0 13 0 1474.7668 O95613 O95613 2451 2463 PCNT Pericentrin yes yes 2 0.015654 73.781 By MS/MS 1 0 1 1 1276300 0 0 1276300 4264 331 4443 17525 14503 14503 0 0 0 275000 GDLPFVVPR AMNREVSSLKNKLRRGDLPFVVPRRMARKG KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R G D P R R 0 1 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 9 0 998.55492 P35579 P35579 1924 1932 MYH9 Myosin-9 yes yes 2 0.031756 76.774 By matching By MS/MS 1.67 0.943 2 1 1 2 46011000 961390 45049000 0 4265 752 4444 17526;17527;17528 14504 14504 1 961390 21934000 0 GDNITLLQSVSN SKTKSRKQLGRIMLKGDNITLLQSVSN___ MLKGDNITLLQSVSN_______________ K G D S N - 0 0 2 1 0 1 0 1 0 1 2 0 0 0 0 2 1 0 0 1 0 0 12 0 1259.6357 P62304 P62304 81 92 SNRPE Small nuclear ribonucleoprotein E yes yes 2 0.0016999 110.53 By MS/MS By MS/MS By MS/MS 7.4 3.32 2 1 1 3 3 5 3 2 722190000 118270000 246990000 356930000 4266 1018 4445 17529;17530;17531;17532;17533;17534;17535;17536;17537;17538 14505;14506;14507;14508;14509;14510;14511;14512 14507 8 174450000 1241500000 474350000 GDPIGGHINNYLLEK SSRFGKYMDINFDFKGDPIGGHINNYLLEK GDPIGGHINNYLLEKSRVIVQQPGERSFHS K G D E K S 0 0 2 1 0 0 1 3 1 2 2 1 0 0 1 0 0 0 1 0 0 0 15 0 1638.8366 O94832 O94832 174 188 MYO1D Unconventional myosin-Id yes yes 2 0.069745 56.139 By MS/MS 2 0 1 1 4583700 0 0 4583700 4267 299 4446 17539 14513 14513 1 0 0 1035800 GDPTGAGPEASLEPGADSVSMQAFSR GYLKGTKGPGITGTKGDPTGAGPEASLEPG LEPGADSVSMQAFSRAQPGAAPGIYQQSAE K G D S R A 4 1 0 2 0 1 2 4 0 0 1 0 1 1 3 4 1 0 0 1 0 0 26 0 2533.1391 P98175 P98175 473 498 RBM10 RNA-binding protein 10 yes yes 3 9.0382E-13 95.834 By MS/MS 2 0 1 1 2940400 0 2940400 0 4268 1117 4447 17540 14514 14514 1 0 1324100 0 GDQENVHPDVMLVQPR ESCLEAYTGIVQGLKGDQENVHPDVMLVQP DQENVHPDVMLVQPRVEFILSFIDHIAGDE K G D P R V 0 1 1 2 0 2 1 1 1 0 1 0 1 0 2 0 0 0 0 3 0 0 16 0 1832.8839 Q14974 Q14974 778 793 KPNB1 Importin subunit beta-1 yes yes 3 0.0010451 78.932 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38160000 0 5692800 32467000 4269 1325 4448 17541;17542;17543 14515;14516;14517 14517 3 0 2563500 6624800 GDREQLLQR ______________________________ ______________________________ M G D Q R A 0 2 0 1 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 1 1113.5891 Q04917 Q04917 2 10 YWHAH 14-3-3 protein eta yes yes 2 0.0001601 120.31 By matching By matching By MS/MS 5.8 1.17 1 1 1 2 3 1 1 50953000 35485000 7425900 8041800 4270 1162 4449 17544;17545;17546;17547;17548 14518;14519 14519 2 31079000 4264000 1427000 GDSVIVVLR KPVNKDRYISKMFLRGDSVIVVLRNPLIAG SKMFLRGDSVIVVLRNPLIAGK________ R G D L R N 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 3 0 0 9 0 956.56548 P62316 P62316 103 111 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 0.00049838 125.01 By MS/MS By MS/MS By MS/MS 8.83 0.687 2 3 1 1 2 3 185180000 7799800 89474000 87904000 4271 1023 4450 17549;17550;17551;17552;17553;17554 14520;14521;14522;14523;14524;14525 14521 6 4378100 51915000 26197000 GDTFSCMVGHEALPLAFTQK AVTSILRVAAEDWKKGDTFSCMVGHEALPL CMVGHEALPLAFTQKTIDRLAGKPTHVNVS K G D Q K T 2 0 0 1 1 1 1 2 1 0 2 1 1 2 1 1 2 0 0 1 0 0 20 0 2208.0344 P01876 P01876 308 327 IGHA1 Ig alpha-1 chain C region yes yes 3 2.921E-05 78.088 By MS/MS 9 0 1 1 2075100 2075100 0 0 4272 386 4451 17555 14526 14526 1 1164700 0 0 GDTNIKPILQVINIRPITTGNSPPR VGQLSEGAIAAIMQKGDTNIKPILQVINIR VINIRPITTGNSPPRYRLLMSDGLNTLSSF K G D P R Y 0 2 3 1 0 1 0 2 0 5 1 1 0 0 4 1 3 0 0 1 0 0 25 2 2713.5239 P27694 P27694 17 41 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 4 9.5183E-30 155.05 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 33977000 0 15071000 18906000 4273 679 4452 17556;17557;17558 14527;14528 14528 2 0 5823200 3666800 GDVAEGDLIEHFSQFGTVEK GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF GDLIEHFSQFGTVEKAEIIADKQSGKKRGF K G D E K A 1 0 0 2 0 1 3 3 1 1 1 1 0 2 0 1 1 0 0 2 0 0 20 0 2177.0277 Q13151 Q13151 107 126 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 1.4466E-186 297.96 By MS/MS By MS/MS 4.73 1.91 1 1 1 1 2 3 2 1 10 242300000 0 1704400 240590000 4274 1225 4453 17559;17560;17561;17562;17563;17564;17565;17566;17567;17568;17569 14529;14530;14531;14532 14532 4 0 590010 36744000 GDVVLQSDHVIETLTK SLFVLHVQRADNKQKGDVVLQSDHVIETLT DVVLQSDHVIETLTKTALSANRVNSININQ K G D T K T 0 0 0 2 0 1 1 1 1 1 2 1 0 0 0 1 2 0 0 3 0 0 16 0 1752.9258 O00159 O00159 990 1005 MYO1C Unconventional myosin-Ic yes yes 2 0.0054589 79.639 By MS/MS 2 0 1 1 4777800 0 0 4777800 4275 106 4454 17570 14533 14533 1 0 0 1079700 GDYLAVVLATQGHTQVLIHQLSR ICHGKPVTQVTWHGRGDYLAVVLATQGHTQ ATQGHTQVLIHQLSRRRSQSPFRRSHGQVQ R G D S R R 2 1 0 1 0 3 0 2 2 1 4 0 0 0 0 1 2 0 1 3 0 0 23 0 2518.3656 Q14137 Q14137 546 568 BOP1 Ribosome biogenesis protein BOP1 yes yes 3;4 1.1514E-20 136.62 By MS/MS 2 0 2 2 16439000 0 0 16439000 4276 1283 4455 17571;17572 14534;14535 14534 2 0 0 3714800 GEAAAERPGEAAVASSPSK ______________________________ AERPGEAAVASSPSKANGQENGHVKVNGDA K G E S K A 6 1 0 0 0 0 3 2 0 0 0 1 0 0 2 3 0 0 0 1 0 0 19 1 1783.8701 P29966 P29966 12 30 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 3 0.001287 66.045 By MS/MS 3.5 0.5 1 1 2 7207000 0 0 7207000 4277 703 4456 17573;17574 14536 14536 1 0 0 1349900 GEADAMSLDGGYLYIAGK ETAENTEECIAKIMKGEADAMSLDGGYLYI DAMSLDGGYLYIAGKCGLVPVLAENYKTEG K G E G K C 3 0 0 2 0 0 1 4 0 1 2 1 1 0 0 1 0 0 2 0 0 0 18 0 1829.8506 CON__Q29443;CON__Q0IIK2 CON__Q29443 387 404 yes no 2 1.6552E-08 124.86 By MS/MS By matching 3 0 2 1 1 10665000 7151700 0 3513100 + 4278 74 4457 17575;17576 14537 14537 1 8251500 0 681370 GEADAMSLDGGYVYTAGK SSASTTEDCIALVLKGEADAMSLDGGYVYT DAMSLDGGYVYTAGKCGLVPVLAENYKSQQ K G E G K C 3 0 0 2 0 0 1 4 0 0 1 1 1 0 0 1 1 0 2 1 0 0 18 0 1803.7985 P02788 P02788 406 423 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 2.4442E-16 176.08 By MS/MS 5.82 2.92 1 1 1 1 1 1 1 1 2 1 11 110300000 110300000 0 0 4279 400 4458;4459 17577;17578;17579;17580;17581;17582;17583;17584;17585;17586;17587 14538;14539;14540;14541;14542;14543;14544;14545;14546;14547;14548 14539 129 11 98945000 0 0 GEAGVPAEFSIWTR GGAHKVRAGGPGLERGEAGVPAEFSIWTRE RGEAGVPAEFSIWTREAGAGGLSIAVEGPS R G E T R E 2 1 0 0 0 0 2 2 0 1 0 0 0 1 1 1 1 1 0 1 0 0 14 0 1518.7467 O75369 O75369 2206 2219 FLNB Filamin-B yes yes 2 0.00042081 134.13 By MS/MS 1.5 0.5 1 1 2 6265600 0 6265600 0 4280 254 4460 17588;17589 14549 14549 1 0 3015200 0 GEATVSFDDPPSAK PMINLYTDRETGKLKGEATVSFDDPPSAKA KGEATVSFDDPPSAKAAIDWFDGKEFSGNP K G E A K A 2 0 0 2 0 0 1 1 0 0 0 1 0 1 2 2 1 0 0 1 0 0 14 0 1419.6518 P35637;Q92804 P35637 335 348 FUS;TAF15 RNA-binding protein FUS;TATA-binding protein-associated factor 2N no no 2 0.00065099 116.54 By MS/MS By MS/MS By MS/MS 3.31 1.9 3 2 3 1 2 1 1 2 4 7 320990000 13720000 92494000 214770000 4281 756;1723 4461 17590;17591;17592;17593;17594;17595;17596;17597;17598;17599;17600;17601;17602 14550;14551;14552;14553;14554;14555;14556;14557;14558;14559;14560;14561;14562 14550 13 15572000 39464000 40446000 GEAVLRPGLDAEPELSPEEQR LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL PGLDAEPELSPEEQRVLERKLKKERKKEER K G E Q R V 2 2 0 1 0 1 5 2 0 0 3 0 0 0 3 1 0 0 0 1 0 0 21 1 2291.1394 Q9BRJ6 Q9BRJ6 44 64 C7orf50 Uncharacterized protein C7orf50 yes yes 3 3.6852E-14 143.74 By MS/MS By MS/MS 7 0 2 1 1 42001000 0 3351500 38650000 4282 1889 4462 17603;17604 14563;14564 14564 2 0 1924500 6858200 GEAVQEELLK ELGIEICLMYIEIEKGEAVQEELLKGLDNK IEIEKGEAVQEELLKGLDNKNPKIIVACIE K G E L K G 1 0 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1114.587 Q14008 Q14008 122 131 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0064229 94.85 By MS/MS 1 0 1 1 45445000 0 0 45445000 4283 1279 4463 17605 14565 14565 1 0 0 9791900 GEDEAELALSLLAQLGITPLPLSR VVFFNACEAASRLARGEDEAELALSLLAQL SLLAQLGITPLPLSRGPVPAKPTVLFEKMG R G E S R G 3 1 0 1 0 1 3 2 0 1 7 0 0 0 2 2 1 0 0 0 0 0 24 0 2505.369 Q66K74 Q66K74 351 374 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 2;3 2.0486E-07 87.148 By MS/MS 2 0 2 2 3970800 0 0 3970800 4284 1465 4464 17606;17607 14566;14567 14567 2 0 0 897330 GEDEEENNLEVR PELEARLAHLGVQVKGEDEEENNLEVRETK QVKGEDEEENNLEVRETKIKGKSGRFFTVK K G E V R E 0 1 2 1 0 0 5 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1431.6114 P04843 P04843 90 101 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 4.3578E-05 147.75 By MS/MS 3 0 1 1 6600400 0 0 6600400 4285 419 4465 17608 14568 14568 1 0 0 1280200 GEDGEMVKLENLFEALNNK AFVVLMAHGREGFLKGEDGEMVKLENLFEA EMVKLENLFEALNNKNCQALRAKPKVYIIQ K G E N K N 1 0 3 1 0 0 4 2 0 0 3 2 1 1 0 0 0 0 0 1 0 0 19 1 2149.0361 P31944 P31944 97 115 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 3 0.011993 46.663 By MS/MS 8 0 1 1 2586700 2586700 0 0 4286 723 4466 17609 14569 14569 1 2220800 0 0 GEDQSELVTTVDK TWILSSNKDVGIWLKGEDQSELVTTVDKVV LKGEDQSELVTTVDKVVCLESAHPRMGVGC K G E D K V 0 0 0 2 0 1 2 1 0 0 1 1 0 0 0 1 2 0 0 2 0 0 13 0 1419.6729 Q8NC56 Q8NC56 340 352 LEMD2 LEM domain-containing protein 2 yes yes 2 0.0075538 93.258 By MS/MS 5.5 1.12 1 1 1 1 4 43263000 0 0 43263000 4287 1631 4467 17610;17611;17612;17613 14570 14570 1 0 0 6923800 GEEGHDPKEPEQLR PGRPQPDSGRRRRRRGEEGHDPKEPEQLRK RGEEGHDPKEPEQLRKLFIGGLSFETTDDS R G E L R K 0 1 0 1 0 1 4 2 1 0 1 1 0 0 2 0 0 0 0 0 0 0 14 1 1619.754 P51991 P51991 22 35 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 0.0017667 84.468 By MS/MS By MS/MS 6.33 1.89 1 3 2 1 1 1 3 6 65526000 0 14800000 50727000 4288 900 4468 17614;17615;17616;17617;17618;17619;17620;17621;17622 14571;14572;14573;14574;14575;14576 14571 6 0 3942400 9146100 GEEGHDPKEPEQLRK PGRPQPDSGRRRRRRGEEGHDPKEPEQLRK GEEGHDPKEPEQLRKLFIGGLSFETTDDSL R G E R K L 0 1 0 1 0 1 4 2 1 0 1 2 0 0 2 0 0 0 0 0 0 0 15 2 1747.8489 P51991 P51991 22 36 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 4 0.0026055 75.911 By MS/MS By MS/MS 5 0 2 1 1 21172000 0 6921000 14251000 4289 900 4469 17623;17624 14577;14578 14578 2 0 1784000 1987800 GEELFTGVVPILVELDGDVNGHK ______________________________ VPILVELDGDVNGHKFSVSGEGEGDATYGK K G E H K F 0 0 1 2 0 0 3 4 1 1 3 1 0 1 1 0 1 0 0 4 0 0 23 0 2436.2537 CON__Q9U6Y5 CON__Q9U6Y5 4 26 yes yes 3 4.4604E-44 203.06 By MS/MS By MS/MS By MS/MS 4 1.54 1 1 2 2 3 2 3 2 6 231910000 4997900 18768000 208150000 + 4290 101 4470 17625;17626;17627;17628;17629;17630;17631;17632;17633;17634;17635 14579;14580;14581;14582;14583;14584;14585;14586 14585 8 4124800 4982900 33055000 GEELLSPLNLEQAAYAR STLREALTHRKIIAKGEELLSPLNLEQAAY ELLSPLNLEQAAYARDALAKAVYSRTFTWL K G E A R D 3 1 1 0 0 1 3 1 0 0 4 0 0 0 1 1 0 0 1 0 0 0 17 0 1872.9581 O00159 O00159 362 378 MYO1C Unconventional myosin-Ic yes yes 2 9.2087E-14 182.35 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 24375000 0 5542000 18833000 4291 106 4471 17636;17637;17638 14587;14588 14588 2 0 2495700 4229400 GEEVGELSR LDLLEILRQEKGGSRGEEVGELSRGKLYSL EKGGSRGEEVGELSRGKLYSLGNGRWMLTL R G E S R G 0 1 0 0 0 0 3 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 974.46689 P09543 P09543 361 369 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 0.072128 66.692 By matching By MS/MS 4.5 0.5 1 1 1 1 11971000 2169400 0 9802000 4292 488 4472 17639;17640 14589 14589 1 1692500 0 1367200 GEFGGFGSVSGK NDDAQFDASHYDSEKGEFGGFGSVSGKIEI SEKGEFGGFGSVSGKIEIEIKINHEGEVNR K G E G K I 0 0 0 0 0 0 1 5 0 0 0 1 0 2 0 2 0 0 0 1 0 0 12 0 1127.5247 Q09028 Q09028 103 114 RBBP4 Histone-binding protein RBBP4 yes yes 2 0.0064468 99.973 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 101220000 0 23335000 77889000 4293 1188 4473 17641;17642;17643;17644 14590;14591;14592 14590 3 0 6460800 11732000 GEFKDEEETVTTK DSDEEKKARRGRSPKGEFKDEEETVTTKHI PKGEFKDEEETVTTKHIHITQATETTTTRH K G E T K H 0 0 0 1 0 0 4 1 0 0 0 2 0 1 0 0 3 0 0 1 0 0 13 1 1511.6991 Q14677 Q14677 248 260 CLINT1 Clathrin interactor 1 yes yes 2 0.0018251 147.26 By MS/MS 3 0 1 1 4298400 0 0 4298400 4294 1311 4474 17645 14593 14593 1 0 0 833680 GEFSASPMLK PVTELASRSPIRQDRGEFSASPMLKSGMSP IRQDRGEFSASPMLKSGMSPEQSRFQSDSS R G E L K S 1 0 0 0 0 0 1 1 0 0 1 1 1 1 1 2 0 0 0 0 0 0 10 0 1065.5165 Q9UQ35 Q9UQ35 1119 1128 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0035882 101.64 By MS/MS By MS/MS 1 0 2 1 1 17474000 0 8088200 9385800 4295 2219 4475 17646;17647 14594;14595 14594 2 0 3953400 2022300 GEFTNLQGVSAASSGR EDELVFRVGSRGREKGEFTNLQGVSAASSG EFTNLQGVSAASSGRIVVADSNNQCIQVFS K G E G R I 2 1 1 0 0 1 1 3 0 0 1 0 0 1 0 3 1 0 0 1 0 0 16 0 1579.759 O75382 O75382 484 499 TRIM3 Tripartite motif-containing protein 3 yes yes 2 0.00098263 95.417 By MS/MS 3 0 1 1 2096400 0 2096400 0 4296 256 4476 17648 14596 14596 1 0 893680 0 GEFVTTVQQR EVGVYEALKDDSWLKGEFVTTVQQRGAAVI DSWLKGEFVTTVQQRGAAVIKARKLSSAMS K G E Q R G 0 1 0 0 0 2 1 1 0 0 0 0 0 1 0 0 2 0 0 2 0 0 10 0 1163.5935 P40925 P40925 221 230 MDH1 Malate dehydrogenase, cytoplasmic yes yes 2 0.014363 86.205 By MS/MS By matching 6.5 0.5 1 1 1 1 10993000 9769700 1223600 0 4297 785 4477 17649;17650 14597 14597 1 13008000 702610 0 GEGAGPPPPLPPAQPGAEGGGDR ______________________________ PLPPAQPGAEGGGDRGLGDRPAPKDKWSNF K G E D R G 3 1 0 1 0 1 2 7 0 0 1 0 0 0 7 0 0 0 0 0 0 0 23 0 2079.9974 Q5T9A4;Q9NVI7 Q9NVI7 13 35 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 4.4206E-20 132.44 By MS/MS 3 0 1 1 7128100 0 0 7128100 4298 2066;1456 4478 17651 14598;14599 14599 2 0 0 1382500 GEGAGQPSTSAQGQPAAPAPQK ______________________________ STSAQGQPAAPAPQKRGRGRPRKQQQEPTG R G E Q K R 5 0 0 0 0 4 1 4 0 0 0 1 0 0 4 2 1 0 0 0 0 0 22 0 2033.9766 P52926 P52926 5 26 HMGA2 High mobility group protein HMGI-C yes yes 2;3 1.1358E-19 136.6 By MS/MS By MS/MS 7.43 0.495 4 3 4 3 20941000 0 10662000 10279000 4299 915 4479 17652;17653;17654;17655;17656;17657;17658 14600;14601;14602;14603;14604;14605;14606 14605 7 0 5776900 1824000 GEGAGQPSTSAQGQPAAPAPQKR ______________________________ TSAQGQPAAPAPQKRGRGRPRKQQQEPTGE R G E K R G 5 1 0 0 0 4 1 4 0 0 0 1 0 0 4 2 1 0 0 0 0 0 23 1 2190.0778 P52926 P52926 5 27 HMGA2 High mobility group protein HMGI-C yes yes 3 5.6372E-36 191.89 By MS/MS By MS/MS 7.67 1.25 1 2 2 1 3 3 51195000 0 35764000 15430000 4300 915 4480 17659;17660;17661;17662;17663;17664 14607;14608;14609;14610;14611;14612;14613 14609 7 0 18791000 3785200 GEGEDEVEEESTALQK AKVAEIRDQKADKKRGEGEDEVEEESTALQ EGEDEVEEESTALQKTDKKEILKKSEKDTN R G E Q K T 1 0 0 1 0 1 6 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 16 0 1748.7588 Q96T23 Q96T23 801 816 RSF1 Remodeling and spacing factor 1 yes yes 2 0.0029001 70.412 By MS/MS 1 0 1 1 0 0 0 0 4301 1837 4481 17665 14614 14614 1 0 0 0 GEGGEFSVDR RPPRERRFEKPLEEKGEGGEFSVDRPIIDR PLEEKGEGGEFSVDRPIIDRPIRGRGGLGR K G E D R P 0 1 0 1 0 0 2 3 0 0 0 0 0 1 0 1 0 0 0 1 0 0 10 0 1051.4571 Q8NC51 Q8NC51 146 155 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.0038574 95.502 By MS/MS 5 0 1 1 3862200 0 3862200 0 4302 1630 4482 17666 14615 14615 0 0 995560 0 GEGGEFSVDRPIIDR RPPRERRFEKPLEEKGEGGEFSVDRPIIDR GEGGEFSVDRPIIDRPIRGRGGLGRGRGGR K G E D R P 0 2 0 2 0 0 2 3 0 2 0 0 0 1 1 1 0 0 0 1 0 0 15 1 1645.806 Q8NC51 Q8NC51 146 160 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 1.727E-16 188.27 By MS/MS 4.5 0.5 1 1 2 23487000 0 0 23487000 4303 1630 4483 17667;17668 14616 14616 1 0 0 3704200 GEGLQLMNLMLR CSCLMLSSNRERFLKGEGLQLMNLMLREKK FLKGEGLQLMNLMLREKKISRSSALKVLDH K G E L R E 0 1 1 0 0 1 1 2 0 0 4 0 2 0 0 0 0 0 0 0 0 0 12 0 1373.7159 Q8WYA6 Q8WYA6 333 344 CTNNBL1 Beta-catenin-like protein 1 yes yes 2 4.8443E-08 168.27 By MS/MS By MS/MS 3 0 2 1 1 18690000 0 1126100 17564000 4304 1700 4484 17669;17670 14617;14618 14618 2 0 480040 3406500 GEHPGLSIGDVAK SAFFLFCSEYRPKIKGEHPGLSIGDVAKKL IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K G E A K K 1 0 0 1 0 0 1 3 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1278.6568 P09429;B2RPK0 P09429 115 127 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2;3 8.0055E-07 163.9 By MS/MS By MS/MS 6.25 0.829 2 2 4 3 5 368740000 0 23319000 345420000 4305 484 4485 17671;17672;17673;17674;17675;17676;17677;17678 14619;14620;14621;14622;14623;14624;14625 14622 7 0 12805000 55622000 GEHSIVYLKPSYAFGSVGK DLPYGLERAIQRMEKGEHSIVYLKPSYAFG IVYLKPSYAFGSVGKEKFQIPPNAELKYEL K G E G K E 1 0 0 0 0 0 1 3 1 1 1 2 0 1 1 3 0 0 2 2 0 0 19 1 2038.0524 Q02790 Q02790 214 232 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 3 0.0022703 62.231 By MS/MS 4 0 1 1 6240200 0 0 6240200 4306 1148 4486 17679 14626 14626 1 0 0 1019200 GEIDAHEDSFK VAGAEALLDRHQEHKGEIDAHEDSFKSADE QEHKGEIDAHEDSFKSADESGQALLAAGHY K G E F K S 1 0 0 2 0 0 2 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1246.5466 Q13813 Q13813 408 418 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0075256 96.034 By MS/MS 1 0 1 1 10917000 0 0 10917000 4307 1268 4487 17680 14627 14627 1 0 0 2352300 GEIEVVTSSLPELYVEK NESKLVQEALEAVPRGEIEVVTSSLPELYV IEVVTSSLPELYVEKVLEFLASSFEVSRHL R G E E K V 0 0 0 0 0 0 4 1 0 1 2 1 0 0 1 2 1 0 1 3 0 0 17 0 1890.9826 Q15269 Q15269 785 801 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 8.2736E-06 124.12 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 13177000 0 3291500 9885800 4308 1352 4488 17681;17682;17683 14628;14629;14630 14628 3 0 1482200 2180200 GEIGDATPFNDAVNVQK GHLIECLQGKVSANKGEIGDATPFNDAVNV IGDATPFNDAVNVQKISNLLSDYGYHLRGN K G E Q K I 2 0 2 2 0 1 1 2 0 1 0 1 0 1 1 0 1 0 0 2 0 0 17 0 1773.8533 P30876 P30876 994 1010 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 1.1449E-05 145.31 By MS/MS 2 0 1 1 11979000 0 0 11979000 4309 715 4489 17684 14631 14631 1 0 0 2707100 GELFVGQLPSEEMVMTGSQGATR AVRTCSRLFGALLERGELFVGQLPSEEMVM PSEEMVMTGSQGATRKYKVWMRHRYHSCCN R G E T R K 1 1 0 0 0 2 3 4 0 0 2 0 2 1 1 2 2 0 0 2 0 0 23 0 2423.1461 Q9BVI4 Q9BVI4 64 86 NOC4L Nucleolar complex protein 4 homolog yes yes 2;3 8.7589E-24 164.01 By MS/MS 4 0 2 2 16951000 0 0 16951000 4310 1914 4490 17685;17686 14632;14633 14632 2 0 0 2768700 GELGELGDAWTSTPMR G E M R 1 1 0 1 0 0 2 3 0 0 2 0 1 0 1 1 2 1 0 0 0 0 16 0 1718.7934 REV__Q4LDR2 yes yes 2 0.0041475 84.658 By MS/MS 4 0 2 2 18357000 0 0 18357000 + 4311 2335 4491 17687;17688 14634 14634 749 1 0 0 2998400 GELTTLIHQLQEK EKSGVIQDALKKSSKGELTTLIHQLQEKDK SKGELTTLIHQLQEKDKLLAAVKEDAAATK K G E E K D 0 0 0 0 0 2 2 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1508.8199 Q86UP2 Q86UP2 325 337 KTN1 Kinectin yes yes 2 0.0038261 103.69 By MS/MS 1.5 0.5 1 1 2 11779000 0 0 11779000 4312 1549 4492 17689;17690 14635 14635 1 0 0 2618000 GEMDSFSLISDSAYVAQNAAR SYGKINILLQTYISRGEMDSFSLISDSAYV SLISDSAYVAQNAARIVRALFEIALRKRWP R G E A R I 4 1 1 2 0 1 1 1 0 1 1 0 1 1 0 4 0 0 1 1 0 0 21 0 2231.0165 Q8N3C0 Q8N3C0 1068 1088 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 5.2815E-28 185.87 By MS/MS 1 0 1 1 2518100 0 2518100 0 4313 1602 4493 17691 14636 14636 1 0 1230800 0 GEMMDLQHGSLFLQTPK ADELALVDVLEDKLKGEMMDLQHGSLFLQT MMDLQHGSLFLQTPKIVADKDYSVTANSKI K G E P K I 0 0 0 1 0 2 1 2 1 0 3 1 2 1 1 1 1 0 0 0 0 0 17 0 1930.9281 P07195 P07195 61 77 LDHB L-lactate dehydrogenase B chain yes yes 2;3 3.9405E-27 198.74 By matching By MS/MS By MS/MS 6.2 0.4 4 1 1 1 3 41720000 2421900 3046500 36252000 4314 452 4494 17692;17693;17694;17695;17696 14637;14638;14639 14639 3 3224800 1054600 5461200 GEMMDLQHGSLFLR ADELALVDVIEDKLKGEMMDLQHGSLFLRT KGEMMDLQHGSLFLRTPKIVSGKDYNVTAN K G E L R T 0 1 0 1 0 1 1 2 1 0 3 0 2 1 0 1 0 0 0 0 0 0 14 0 1632.7752 P00338 P00338 60 73 LDHA L-lactate dehydrogenase A chain yes yes 3 7.0024E-05 129.37 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 24335000 0 3811900 20523000 4315 356 4495 17697;17698;17699 14640;14641 14641 2 0 1319600 3133900 GEMNVTLGIPR PSTQMTLNTFHFAGRGEMNVTLGIPRLREI FAGRGEMNVTLGIPRLREILMVASANIKTP R G E P R L 0 1 1 0 0 0 1 2 0 1 1 0 1 0 1 0 1 0 0 1 0 0 11 0 1185.6176 O95602 O95602 1237 1247 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.00057501 118.71 By MS/MS By MS/MS 1 0 2 1 1 4840000 0 4840000 0 4316 330 4496 17700;17701 14642;14643 14642 2 0 2365700 0 GEMQVVPVLVHLLSAISSVR NSATEAAKPAKPDEKGEMQVVPVLVHLLSA VPVLVHLLSAISSVRLYIPKDLRPVDNRQS K G E V R L 1 1 0 0 0 1 1 1 1 1 3 0 1 0 1 3 0 0 0 5 0 0 20 0 2133.198 P42285 P42285 724 743 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2;3 2.327E-13 128.96 By MS/MS 2.14 0.99 2 3 1 1 7 31042000 0 0 31042000 4317 800 4497;4498 17702;17703;17704;17705;17706;17707;17708 14644;14645;14646;14647 14646 394 4 0 0 6931600 GENLVSMTVEGPPPK AEREEKRVLGLVLLRGENLVSMTVEGPPPK GENLVSMTVEGPPPKDTGIARVPLAGAAGG R G E P K D 0 0 1 0 0 0 2 2 0 0 1 1 1 0 3 1 1 0 0 2 0 0 15 0 1553.7759 P14678;P63162 P14678 74 88 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2;3 6.0603E-09 163.78 By MS/MS By MS/MS By MS/MS 6.87 0.618 4 9 2 1 7 7 196040000 2407900 83670000 109960000 4318 563 4499;4500 17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720;17721;17722;17723 14648;14649;14650;14651;14652;14653;14654;14655;14656;14657;14658;14659;14660;14661;14662;14663;14664;14665;14666;14667;14668;14669;14670;14671 14666 246 23 5189600 43173000 18131000 GENLVSMTVEGPPPKDTGIAR AEREEKRVLGLVLLRGENLVSMTVEGPPPK MTVEGPPPKDTGIARVPLAGAAGGPGIGRA R G E A R V 1 1 1 1 0 0 2 3 0 1 1 1 1 0 3 1 2 0 0 2 0 0 21 1 2167.0943 P14678;P63162 P14678 74 94 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 3 3.253E-14 122.19 By MS/MS By matching 6.6 0.49 2 3 4 1 64066000 0 59750000 4315600 4319 563 4501;4502 17724;17725;17726;17727;17728 14672;14673;14674;14675;14676;14677 14676 246 6 0 28655000 765780 GEPAAAAAPEAGASPVEK AAAGSGAASPSAAEKGEPAAAAAPEAGASP AAAAAPEAGASPVEKEAPAEGEAAEPGSPT K G E E K E 7 0 0 0 0 0 3 2 0 0 0 1 0 0 3 1 0 0 0 1 0 0 18 0 1621.7948 P29966 P29966 88 105 MARCKS Myristoylated alanine-rich C-kinase substrate yes yes 2 4.1571E-08 111.12 By MS/MS 3.5 0.5 1 1 2 7569400 0 0 7569400 4320 703 4503 17729;17730 14678 14678 1 0 0 1364300 GEPETFLPLDYLEVKPTDEK EKTGRDCIQYIKEQRGEPETFLPLDYLEVK FLPLDYLEVKPTDEKLRELKGAKLVIDVIR R G E E K L 0 0 0 2 0 0 4 1 0 0 3 2 0 1 3 0 2 0 1 1 0 0 20 1 2319.1522 Q14683 Q14683 565 584 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 2.7359E-12 143.46 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 143850000 0 8359600 135490000 4321 1312 4504 17731;17732;17733;17734;17735;17736 14679;14680;14681;14682;14683;14684;14685 14682 7 0 3828900 30065000 GEPGAAPLSAPAFSLVFPFLK VMLLHTHTITSRVGKGEPGAAPLSAPAFSL PLSAPAFSLVFPFLKMVLTEMPHHSEEEEE K G E L K M 4 0 0 0 0 0 1 2 0 0 3 1 0 3 4 2 0 0 0 1 0 0 21 0 2115.1405 Q92616 Q92616 966 986 GCN1L1 Translational activator GCN1 yes yes 2;3 0.023925 49.31 By MS/MS By matching 1.5 0.5 2 2 3 1 1653900 0 1078100 575780 4322 1712 4505 17737;17738;17739;17740 14686;14687 14686 2 0 521030 130110 GEQALQDAWQK QIEQMQSLISDAEERGEQALQDAWQKLQDL AEERGEQALQDAWQKLQDLEEALQQSKEEL R G E Q K L 2 0 0 1 0 3 1 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 11 0 1272.6099 CON__Q7Z794;Q7Z794 CON__Q7Z794 417 427 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.00024145 135.43 By MS/MS 5 0 1 1 10545000 10545000 0 0 + 4323 95 4506 17741 14688 14688 1 8447800 0 0 GEQVSQNGLPAEQGSPR VSEEAESQQQWDTSKGEQVSQNGLPAEQGS QVSQNGLPAEQGSPRMAETVDTSEMVNGAT K G E P R M 1 1 1 0 0 3 2 3 0 0 1 0 0 0 2 2 0 0 0 1 0 0 17 0 1752.8391 Q01082 Q01082 2124 2140 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 9.5609E-10 172.99 By MS/MS 1 0 1 1 4368700 0 4368700 0 4324 1128 4507 17742 14689 14689 1 0 2135400 0 GESDDFHMDFDSAVAPR FEKIVSKAVTSKKSKGESDDFHMDFDSAVA SDDFHMDFDSAVAPRAKSVRAKKPIKYLEE K G E P R A 2 1 0 4 0 0 1 1 1 0 0 0 1 2 1 2 0 0 0 1 0 0 17 0 1894.7792 P11388 P11388 1493 1509 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0010388 74.786 By MS/MS 1 0 1 1 9733100 0 0 9733100 4325 524 4508 17743 14690 14690 1 0 0 2097100 GETVPLDVLQIK NKVQHITDATLAIVKGETVPLDVLQIKGEK IVKGETVPLDVLQIKGEKEQPVFAMTGLRW K G E I K G 0 0 0 1 0 1 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 12 0 1310.7446 Q53H12 Q53H12 185 196 AGK Acylglycerol kinase, mitochondrial yes yes 2 0.055721 71.614 By MS/MS 4.5 0.5 1 1 2 6081800 0 0 6081800 4326 1427 4509 17744;17745 14691 14691 1 0 0 869250 GEVAQMAAYYEHR GLLSELLHNCDGQLKGEVAQMAAYYEHRLQ LKGEVAQMAAYYEHRLQLGSKAIYHLEAFV K G E H R L 3 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 2 1 0 0 13 0 1523.6827 P40938 P40938 309 321 RFC3 Replication factor C subunit 3 yes yes 2 0.00031883 143.79 By MS/MS 5.5 0.5 1 1 2 9445500 0 0 9445500 4327 788 4510 17746;17747 14692 14692 1 0 0 1368400 GEVGLLFTNR DEYKDNLHQVSKRLRGEVGLLFTNRTKEEV SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R G E N R T 0 1 1 0 0 0 1 2 0 0 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1104.5928 Q9UKD2 Q9UKD2 98 107 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0058761 96.034 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 87968000 0 4824500 83144000 4328 2177 4511 17748;17749;17750 14693;14694 14694 1 0 1670100 13732000 GEVLGDVLQLETLK EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ KGEVLGDVLQLETLKQEAATLAANNTQLQA K G E L K Q 0 0 0 1 0 1 2 2 0 0 4 1 0 0 0 0 1 0 0 2 0 0 14 0 1512.8399 Q14980 Q14980 406 419 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00026802 150.46 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 45218000 0 5417800 39800000 4329 1327 4512 17751;17752;17753 14695;14696 14696 2 0 2648100 8598200 GEVLGDVLQLETLKQEAATLAANNTQLQAR EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ EAATLAANNTQLQARVEMLETERGQQEAKL K G E A R V 5 1 2 1 0 4 3 2 0 0 6 1 0 0 0 0 3 0 0 2 0 0 30 1 3193.6943 Q14980 Q14980 406 435 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 2.7688E-19 94.591 By MS/MS 1 0 1 1 9779000 0 0 9779000 4330 1327 4513 17754 14697 14697 1 0 0 2107000 GEVTAADLFNSR ETETQNQGIKVAAIRGEVTAADLFNSRVID AIRGEVTAADLFNSRVIDQKTLHTLRVGRT R G E S R V 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 1 0 0 12 0 1278.6204 P58107 P58107 1852 1863 EPPK1 Epiplakin yes yes 2 0.00025494 130.79 By matching By MS/MS 1 0 2 1 1 9238400 996400 0 8242000 4331 958 4514 17755;17756 14698 14698 1 996400 0 1775900 GFAAMEETHQK QSAREGYVLQATCERGFAAMEETHQKKIED TCERGFAAMEETHQKKIEDLQRQHQRELEK R G F Q K K 2 0 0 0 0 1 2 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 11 0 1247.5605 Q6WCQ1 Q6WCQ1 727 737 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 0.0027077 107.15 By MS/MS 1.5 0.5 1 1 2 4644600 0 0 4644600 4332 1507 4515 17757;17758 14699 14699 1 0 0 1028600 GFAFVEFSHLQDATR REVRLMRNKSSGQSRGFAFVEFSHLQDATR GFAFVEFSHLQDATRWMEANQHSLNILGQK R G F T R W 2 1 0 1 0 1 1 1 1 0 1 0 0 3 0 1 1 0 0 1 0 0 15 0 1723.8318 P98175 P98175 172 186 RBM10 RNA-binding protein 10 yes yes 3 0.0027821 72.175 By MS/MS 1.5 0.5 1 1 2 16895000 0 0 16895000 4333 1117 4516 17759;17760 14700 14700 1 0 0 3795500 GFAFVQYVNER IFSKYGKIVGCSVHKGFAFVQYVNERNARA SVHKGFAFVQYVNERNARAAVAGEDGRMIA K G F E R N 1 1 1 0 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1328.6513 P07910 P07910 51 61 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2 3.3217E-47 226.04 By MS/MS By MS/MS By MS/MS 5.26 2.49 1 3 1 2 3 3 2 2 1 1 4 7 8 1142800000 50962000 441350000 650490000 4334 467 4517 17761;17762;17763;17764;17765;17766;17767;17768;17769;17770;17771;17772;17773;17774;17775;17776;17777;17778;17779 14701;14702;14703;14704;14705;14706;14707;14708;14709;14710;14711;14712;14713;14714;14715;14716;14717;14718;14719 14704 19 59132000 167550000 97659000 GFAFVTFDDHDSVDK EVIEIMTDRGSGKKRGFAFVTFDDHDSVDK GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 15 0 1698.7526 P09651;Q32P51 P09651 147 161 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 1.9349E-06 163.78 By MS/MS By MS/MS 4.33 1.8 2 2 1 3 4 5 1 3 15 524780000 0 38650000 486130000 4335 490 4518 17780;17781;17782;17783;17784;17785;17786;17787;17788;17789;17790;17791;17792;17793;17794;17795;17796;17797 14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733 14722 14 0 12854000 73972000 GFAFVTFDDHDSVDKIVIQK EVIEIMTDRGSGKKRGFAFVTFDDHDSVDK TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL R G F Q K Y 1 0 0 4 0 1 0 1 1 2 0 2 0 3 0 1 1 0 0 3 0 0 20 1 2280.1426 P09651;Q32P51 P09651 147 166 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 3;4 6.5269E-11 112.74 By matching By MS/MS By MS/MS 4.75 1.71 1 1 2 4 1 5 2 120620000 2216000 98593000 19808000 4336 490 4519 17798;17799;17800;17801;17802;17803;17804;17805 14734;14735;14736;14737 14735 4 2216000 32359000 2963500 GFAFVTFDDHDTVDK ETIEVMEDRQSGKKRGFAFVTFDDHDTVDK GFAFVTFDDHDTVDKIVVQKYHTINGHNCE R G F D K I 1 0 0 4 0 0 0 1 1 0 0 1 0 3 0 0 2 0 0 2 0 0 15 0 1712.7682 P51991 P51991 168 182 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 5.0454E-05 115 By MS/MS By MS/MS By MS/MS 4.5 1.66 1 1 1 1 5 2 1 2 1 9 221770000 12876000 0 208900000 4337 900 4520 17806;17807;17808;17809;17810;17811;17812;17813;17814;17815;17816;17817 14738;14739;14740;14741;14742;14743;14744;14745;14746 14739 9 10315000 0 30035000 GFAFVTFDDHDTVDKIVVQK ETIEVMEDRQSGKKRGFAFVTFDDHDTVDK TFDDHDTVDKIVVQKYHTINGHNCEVKKAL R G F Q K Y 1 0 0 4 0 1 0 1 1 1 0 2 0 3 0 0 2 0 0 4 0 0 20 1 2280.1426 P51991 P51991 168 187 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 5.6318E-05 77.468 By matching By MS/MS 5.5 0.5 2 2 1 3 25042000 9456400 15585000 0 4338 900 4521 17818;17819;17820;17821 14747;14748;14749 14748 3 7575800 4872200 0 GFAFVTFESPADAK VEVLLMKDRETNKSRGFAFVTFESPADAKD RGFAFVTFESPADAKDAARDMNGKSLDGKA R G F A K D 3 0 0 1 0 0 1 1 0 0 0 1 0 3 1 1 1 0 0 1 0 0 14 0 1485.714 P38159;O75526;Q8N7X1;Q96E39 P38159 50 63 RBMX;RBMXL2;RBMXL3;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3;RNA binding motif protein, X-linked-like-1 no no 2 1.2197E-17 193.52 By MS/MS By MS/MS By MS/MS 4.43 2.23 2 2 1 1 3 2 2 1 1 7 6 426050000 17483000 72356000 336210000 4339 771;1772 4522 17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835 14750;14751;14752;14753;14754;14755;14756;14757;14758;14759;14760;14761 14751 12 14006000 22804000 51860000 GFAFVYFENVDDAK ADVSIVYDQQSRRSRGFAFVYFENVDDAKE RGFAFVYFENVDDAKEAKERANGMELDGRR R G F A K E 2 0 1 2 0 0 1 1 0 0 0 1 0 3 0 0 0 0 1 2 0 0 14 0 1620.746 P62995 P62995 160 173 TRA2B Transformer-2 protein homolog beta yes yes 2 0.00057339 140.07 By MS/MS By MS/MS 5.25 0.829 1 1 2 2 2 29668000 0 8868300 20800000 4340 1055 4523 17836;17837;17838;17839 14762;14763;14764 14763 3 0 3064300 2983300 GFAFVYFER SGVNVVYDQRTGRSRGFAFVYFERIDDSKE RTGRSRGFAFVYFERIDDSKEAMERANGME R G F E R I 1 1 0 0 0 0 1 1 0 0 0 0 0 3 0 0 0 0 1 1 0 0 9 0 1134.5498 Q13595 Q13595 161 169 TRA2A Transformer-2 protein homolog alpha yes yes 2 0.00046492 119.17 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 46358000 0 4086900 42271000 4341 1260 4524 17840;17841;17842 14765;14766;14767 14767 3 0 1414800 6041800 GFAPADVFVQWLQR QLSLRESASVTCLVKGFAPADVFVQWLQRG KGFAPADVFVQWLQRGEPVTKSKYVTSSPA K G F Q R G 2 1 0 1 0 2 0 1 0 0 1 0 0 2 1 0 0 1 0 2 0 0 14 0 1632.8413 CON__Q1RMK2 CON__Q1RMK2 499 512 yes yes 3 0.00072459 91.858 By MS/MS 2.5 0.5 1 1 2 5446700 0 0 5446700 + 4342 76 4525 17843;17844 14768 14768 1 0 0 1065800 GFASQVEQLISMGANVHSK HSETSATALMVAAGRGFASQVEQLISMGAN QVEQLISMGANVHSKASNGWMALDWAKHFG R G F S K A 2 0 1 0 0 2 1 2 1 1 1 1 1 1 0 3 0 0 0 2 0 0 19 0 2001.9942 Q9H6S0 Q9H6S0 518 536 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 3 0.00013077 79.511 By MS/MS 2 0 1 1 5020500 0 0 5020500 4343 1989 4526 17845 14769 14769 1 0 0 1134500 GFAYVQFEDVR VDVYVPLDFYTRRPRGFAYVQFEDVRDAED RRPRGFAYVQFEDVRDAEDALHNLDRKWIC R G F V R D 1 1 0 1 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 2 0 0 11 0 1329.6354 O75494;Q8WXF0 O75494 52 62 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 2 0.00029601 133.23 By MS/MS By MS/MS 6.14 1.25 1 1 2 2 1 2 5 130290000 0 10926000 119370000 4344 267;1694 4527 17846;17847;17848;17849;17850;17851;17852 14770;14771;14772;14773;14774 14774 5 0 4732900 19465000 GFCFITFKEEEPVKK ESIELPMDNKTNKRRGFCFITFKEEEPVKK GFCFITFKEEEPVKKIMEKKYHNVGLSKCE R G F K K I 0 0 0 0 1 0 3 1 0 1 0 3 0 3 1 0 1 0 0 1 0 0 15 2 1857.9335 Q14103 Q14103 224 238 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 3 0.024503 55.186 By MS/MS 5 0 1 1 11420000 0 0 11420000 4345 1281 4528 17853 14775 14775 1 0 0 1592900 GFCFLEYEDHK DVILYHQPDDKKKNRGFCFLEYEDHKSAAQ KKNRGFCFLEYEDHKSAAQARRRLMSGKVK R G F H K S 0 0 0 1 1 0 2 1 1 0 1 1 0 2 0 0 0 0 1 0 0 0 11 0 1443.6129 O43390;O60506 O43390 290 300 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2;3 0.0054876 78.653 By MS/MS 4 1.73 2 2 1 1 1 1 8 19630000 0 0 19630000 4346 195;227 4529 17854;17855;17856;17857;17858;17859;17860;17861 14776;14777 14777 2 0 0 3683000 GFDALQYQEHLDYEIIQSLNPEFNK PSPDNLHTLFEFVFKGFDALQYQEHLDYEI LDYEIIQSLNPEFNKAVIRVNVFREHRQTI K G F N K A 1 0 2 2 0 3 3 1 1 2 3 1 0 2 1 1 0 0 2 0 0 0 25 0 3010.4349 Q9H0A0 Q9H0A0 329 353 NAT10 N-acetyltransferase 10 yes yes 3 6.1628E-25 123.2 By MS/MS 2 0 1 1 71656000 0 0 71656000 4347 1959 4530 17862 14778 14778 1 0 0 16193000 GFDILGIKPVQR WRMLLCEAVAAVMAKGFDILGIKPVQRM__ MAKGFDILGIKPVQRM______________ K G F Q R M 0 1 0 1 0 1 0 2 0 2 1 1 0 1 1 0 0 0 0 1 0 0 12 1 1341.7769 P54136 P54136 648 659 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 0.00029738 114.86 By MS/MS By MS/MS 3 0 2 1 1 7921100 0 2187400 5733800 4348 927 4531 17863;17864 14779;14780 14780 2 0 932480 1112100 GFDQTINLILDESHER AVITSDGRMIVGTLKGFDQTINLILDESHE FDQTINLILDESHERVFSSSQGVEQVVLGL K G F E R V 0 1 1 2 0 1 2 1 1 2 2 0 0 1 0 1 1 0 0 0 0 0 16 0 1885.917 O95777 O95777 29 44 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 3 0.004628 62.646 By MS/MS 9 0 1 1 3510800 0 0 3510800 4349 338 4532 17865 14781 14781 1 0 0 1121500 GFDTSSSSSNSAASSSFK LACESAKPGTKSGFKGFDTSSSSSNSAASS TSSSSSNSAASSSFKFGVSSSSSGPSQTLT K G F F K F 2 0 1 1 0 0 0 1 0 0 0 1 0 2 0 9 1 0 0 0 0 0 18 0 1752.7439 P49790 P49790 887 904 NUP153 Nuclear pore complex protein Nup153 yes yes 2 1.5556E-52 150.21 By MS/MS 1 0 1 1 0 0 0 0 4350 870 4533 17866 14782 14782 1 0 0 0 GFDVFNALDLMENK LLDLMSDALVLAKMKGFDVFNALDLMENKT KGFDVFNALDLMENKTFLEKLKFGIGDGNL K G F N K T 1 0 2 2 0 0 1 1 0 0 2 1 1 2 0 0 0 0 0 1 0 0 14 0 1611.7603 P30419;O60551 P30419 446 459 NMT1;NMT2 Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2 yes no 2 0.0021801 101.39 By MS/MS 4 0 1 1 29731000 0 0 29731000 4351 714 4534 17867 14783 14783 1 0 0 4856100 GFELTFK VRETHSLFFRSLKDRGFELTFKTADDPSLS FFRSLKDRGFELTFKTADDPSLSLIKYGEF R G F F K T 0 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 7 0 840.43815 P39656 P39656 71 77 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes yes 2 0.058398 75.311 By MS/MS By MS/MS 5 0 2 1 1 9087600 0 3063300 6024300 4352 779 4535 17868;17869 14784;14785 14785 2 0 789620 840280 GFEPTLEALFGK GFASADLIEIGLEGKGFEPTLEALFGKQGF EGKGFEPTLEALFGKQGFFPDSVNKALYWV K G F G K Q 1 0 0 0 0 0 2 2 0 0 2 1 0 2 1 0 1 0 0 0 0 0 12 0 1307.6762 P04114;CON__ENSEMBL:ENSBTAP00000032840 P04114 696 707 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes no 2 0.015215 87.913 By MS/MS 1 0 1 1 2508300 0 0 2508300 + 4353 411 4536 17870 14786 14786 1 0 0 540450 GFFDPNTEENLTYLQLK EELSEILSDPSDDTKGFFDPNTEENLTYLQ FDPNTEENLTYLQLKERCIKDEETGLCLLP K G F L K E 0 0 2 1 0 1 2 1 0 0 3 1 0 2 1 0 2 0 1 0 0 0 17 0 2027.984 P15924 P15924 2414 2430 DSP Desmoplakin yes yes 2 1.4045E-36 207.88 By MS/MS By MS/MS By MS/MS 4 2.66 3 1 1 2 1 1 1 1 6 1 4 102020000 40489000 6728300 54803000 4354 572 4537 17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881 14787;14788;14789;14790;14791;14792;14793;14794;14795 14789 9 33489000 3288700 10852000 GFFDPNTEENLTYLQLMER EEMNEILTDPSDDTKGFFDPNTEENLTYLQ PNTEENLTYLQLMERCITDPQTGLCLLPLK K G F E R C 0 1 2 1 0 1 3 1 0 0 3 0 1 2 1 0 2 0 1 0 0 0 19 0 2316.0732 Q15149 Q15149 4226 4244 PLEC Plectin yes yes 2 1.2041E-17 184.21 By MS/MS 1 0 1 1 5536200 0 0 5536200 4355 1348 4538 17882 14796 14796 1 0 0 1192900 GFFDPNTHENLTYLQLLER EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLERCVEDPETGLCLLPLT K G F E R C 0 1 2 1 0 1 2 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2306.1331 P58107;Q15149 Q15149 2989 3007 EPPK1;PLEC Epiplakin;Plectin no no 2;3 1.0007E-51 218.21 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 18937000 0 742260 18195000 4356 1348;958 4539 17883;17884;17885;17886 14797;14798 14798 2 0 362810 4040900 GFFDPNTHENLTYLQLLQR EEMNRVLADPSDDTKGFFDPNTHENLTYLQ PNTHENLTYLQLLQRATLDPETGLLFLSLS K G F Q R A 0 1 2 1 0 2 1 1 1 0 4 0 0 2 1 0 2 0 1 0 0 0 19 0 2305.1491 P58107 P58107 5053 5071 EPPK1 Epiplakin yes yes 3 4.9398E-05 94.01 By MS/MS 3 1 1 1 2 3545600 0 3545600 0 4357 958 4540 17887;17888 14799 14799 1 0 1428500 0 GFFDPNTHENLTYR EEMNRVLADPSDDTKGFFDPNTHENLTYRQ KGFFDPNTHENLTYRQLLERCVEDPETGLR K G F Y R Q 0 1 2 1 0 0 1 1 1 0 1 0 0 2 1 0 2 0 1 0 0 0 14 0 1709.7798 Q15149 Q15149 3648 3661 PLEC Plectin yes yes 2;3 7.9734E-05 143 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 37285000 0 13015000 24270000 4358 1348 4541 17889;17890;17891 14800;14801 14800 2 0 6361700 5305800 GFFDPNTHENLTYVQLLR EEMNRVLADPSDDTKGFFDPNTHENLTYVQ DPNTHENLTYVQLLRRCVPDPDTGLYMLQL K G F L R R 0 1 2 1 0 1 1 1 1 0 3 0 0 2 1 0 2 0 1 1 0 0 18 0 2163.0749 P58107 P58107 2385 2402 EPPK1 Epiplakin yes no 2;3 1.3382E-64 232.13 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 104980000 0 43335000 61647000 4359 958 4542 17892;17893;17894;17895;17896;17897 14802;14803;14804;14805 14804 4 0 20277000 13248000 GFFGFPGPR ______________________________ LFDLFRGFFGFPGPRSHRDPFFGGMTRDED R G F P R S 0 1 0 0 0 0 0 3 0 0 0 0 0 3 2 0 0 0 0 0 0 0 9 0 980.48684 O00165 O00165 9 17 HAX1 HCLS1-associated protein X-1 yes yes 2 0.00050031 124.89 By MS/MS 6 0 1 1 4491100 0 0 4491100 4360 108 4543 17898 14806 14806 1 0 0 671910 GFGDGYNGYGGGPGGGNFGGSPGYGGGR GSNFRGGSDGYGSGRGFGDGYNGYGGGPGG GGGNFGGSPGYGGGRGGYGGGGPGYGNQGG R G F G R G 0 1 2 1 0 0 0 16 0 0 0 0 0 2 2 1 0 0 3 0 0 0 28 0 2494.0323 P22626 P22626 239 266 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 5.6436E-130 254.59 By MS/MS By MS/MS By MS/MS 5.46 0.843 2 4 6 1 1 8 4 293970000 2368800 204250000 87354000 4361 632 4544 17899;17900;17901;17902;17903;17904;17905;17906;17907;17908;17909;17910;17911 14807;14808;14809;14810;14811;14812;14813;14814;14815;14816;14817;14818;14819 14818 13 3154100 68810000 12712000 GFGFGQGAGALVHSE EIYCKGCYAKNFGPKGFGFGQGAGALVHSE GFGFGQGAGALVHSE_______________ K G F S E - 2 0 0 0 0 1 1 5 1 0 1 0 0 2 0 1 0 0 0 1 0 0 15 0 1432.6735 P21291 P21291 179 193 CSRP1 Cysteine and glycine-rich protein 1 yes yes 2 1.7193E-11 177.78 By MS/MS By MS/MS 7 0 2 1 1 91465000 19356000 0 72109000 4362 622 4545 17912;17913 14820;14821 14820 2 41716000 0 12795000 GFGFILFK VDCTIKMDPNTGRSRGFGFILFKDAASVEK PNTGRSRGFGFILFKDAASVEKVLDQKEHR R G F F K D 0 0 0 0 0 0 0 2 0 1 1 1 0 3 0 0 0 0 0 0 0 0 8 0 927.52182 Q99729 Q99729 111 118 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2 0.054079 71.949 By MS/MS By MS/MS 4.73 2.42 1 1 2 2 1 1 1 1 1 5 6 245810000 0 57659000 188150000 4363 1861 4546 17914;17915;17916;17917;17918;17919;17920;17921;17922;17923;17924 14822;14823;14824;14825;14826;14827 14822 6 0 20339000 27625000 GFGFITFTNPEHASVAMR SEVVVVKDRETQRSRGFGFITFTNPEHASV FITFTNPEHASVAMRAMNGESLDGRQIRVD R G F M R A 2 1 1 0 0 0 1 2 1 1 0 0 1 3 1 1 2 0 0 1 0 0 18 0 1980.9516 P98179 P98179 48 65 RBM3 RNA-binding protein 3 yes yes 2;3 2.347E-79 241.17 By MS/MS By MS/MS By MS/MS 8 0.555 2 9 2 2 5 6 685790000 21905000 225970000 437910000 4364 1118 4547;4548 17925;17926;17927;17928;17929;17930;17931;17932;17933;17934;17935;17936;17937 14828;14829;14830;14831;14832;14833;14834;14835;14836;14837;14838;14839;14840;14841 14832 530 14 18806000 103310000 70531000 GFGFVCFSSPEEATK TITSAKVMMEGGRSKGFGFVCFSSPEEATK GFGFVCFSSPEEATKAVTEMNGRIVATKPL K G F T K A 1 0 0 0 1 0 2 2 0 0 0 1 0 3 1 2 1 0 0 1 0 0 15 0 1661.7396 P11940;Q9H361;Q4VXU2;Q13310 P11940 334 348 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 2 0.00041877 137.89 By MS/MS 3 0 1 1 12275000 0 0 12275000 4365 530;1237 4549 17938 14842 14842 1 0 0 2380700 GFGFVDFNSEEDAK VRARIVTDRETGSSKGFGFVDFNSEEDAKA KGFGFVDFNSEEDAKAAKEAMEDGEIDGNK K G F A K A 1 0 1 2 0 0 2 2 0 0 0 1 0 3 0 1 0 0 0 1 0 0 14 0 1560.6733 P19338 P19338 611 624 NCL Nucleolin yes yes 2 1.4421E-25 205.53 By MS/MS By MS/MS 3.45 1.88 2 2 2 2 1 1 1 4 7 445220000 0 30549000 414670000 4366 604 4550 17939;17940;17941;17942;17943;17944;17945;17946;17947;17948;17949 14843;14844;14845;14846;14847;14848;14849;14850;14851 14844 9 0 13314000 85951000 GFGFVLFK VDCTLKLDPITGRSRGFGFVLFKESESVDK PITGRSRGFGFVLFKESESVDKVMDQKEHK R G F F K E 0 0 0 0 0 0 0 2 0 0 1 1 0 3 0 0 0 0 0 1 0 0 8 0 913.50617 Q14103;O14979 Q14103 139 146 HNRNPD;HNRNPDL Heterogeneous nuclear ribonucleoprotein D0;Heterogeneous nuclear ribonucleoprotein D-like no no 1;2 0.026229 111.69 By MS/MS By MS/MS 6 1.91 1 2 1 3 2 1 1 7 4 579180000 0 474160000 105010000 4367 1281;157 4551 17950;17951;17952;17953;17954;17955;17956;17957;17958;17959;17960 14852;14853;14854;14855;14856;14857;14858 14852 6 0 146790000 17465000 GFGFVSFER ALSVKVMTDESGKSKGFGFVSFERHEDAQK ESGKSKGFGFVSFERHEDAQKAVDEMNGKE K G F E R H 0 1 0 0 0 0 1 2 0 0 0 0 0 3 0 1 0 0 0 1 0 0 9 0 1044.5029 P11940;Q9H361 P11940 232 240 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 7.279E-08 162.5 By MS/MS By MS/MS 3.27 1.6 2 2 2 2 2 1 5 6 153420000 0 81673000 71751000 4368 530 4552 17961;17962;17963;17964;17965;17966;17967;17968;17969;17970;17971 14859;14860;14861;14862;14863;14864;14865;14866;14867;14868;14869 14861 11 0 33243000 13451000 GFGFVSYEK TLSVKVMRDPNGKSKGFGFVSYEKHEDANK PNGKSKGFGFVSYEKHEDANKAVEEMNGKE K G F E K H 0 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 0 0 1 1 0 0 9 0 1032.4916 Q13310 Q13310 232 240 PABPC4 Polyadenylate-binding protein 4 yes yes 2 0.00038036 121.62 By MS/MS 3 0 1 1 31260000 0 31260000 0 4369 1237 4553 17972 14870 14870 1 0 13326000 0 GFGFVSYEKHEDANK TLSVKVMRDPNGKSKGFGFVSYEKHEDANK GFGFVSYEKHEDANKAVEEMNGKEISGKII K G F N K A 1 0 1 1 0 0 2 2 1 0 0 2 0 2 0 1 0 0 1 1 0 0 15 1 1726.7951 Q13310 Q13310 232 246 PABPC4 Polyadenylate-binding protein 4 yes yes 3 0.012729 58.32 By MS/MS 3 0 1 1 4667400 0 4667400 0 4370 1237 4554 17973 14871 14871 1 0 1989700 0 GFGFVTFADPASVDK RECMVMRDPTTKRSRGFGFVTFADPASVDK GFGFVTFADPASVDKVLGQPHHELDSKTID R G F D K V 2 0 0 2 0 0 0 2 0 0 0 1 0 3 1 1 1 0 0 2 0 0 15 0 1556.7511 Q96DH6 Q96DH6 63 77 MSI2 RNA-binding protein Musashi homolog 2 yes yes 2 0.007681 78.342 By MS/MS By matching 6 0 2 1 1 12912000 0 4071100 8840900 4371 1766 4555 17974;17975 14872 14872 1 0 1409300 1322700 GFGFVTFDDHDPVDK DTIEIITDRQSGKKRGFGFVTFDDHDPVDK GFGFVTFDDHDPVDKIVLQKYHTINGHNAE R G F D K I 0 0 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 15 0 1694.7577 P22626 P22626 154 168 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 2.8879E-17 186.02 By MS/MS By MS/MS 5.33 1.3 1 1 5 6 2 5 10 1241400000 0 109970000 1131500000 4372 632 4556 17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987;17988;17989;17990 14873;14874;14875;14876;14877;14878;14879;14880;14881;14882;14883;14884;14885;14886;14887 14874 15 0 36063000 166010000 GFGFVTFDDHDPVDKIVLQK DTIEIITDRQSGKKRGFGFVTFDDHDPVDK TFDDHDPVDKIVLQKYHTINGHNAEVRKAL R G F Q K Y 0 0 0 4 0 1 0 2 1 1 1 2 0 3 1 0 1 0 0 3 0 0 20 1 2276.1477 P22626 P22626 154 173 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3;4 2.7586E-12 141.13 By MS/MS By MS/MS 5.18 1.4 1 4 6 5 6 290470000 0 225790000 64673000 4373 632 4557 17991;17992;17993;17994;17995;17996;17997;17998;17999;18000;18001 14888;14889;14890;14891;14892;14893;14894;14895;14896;14897;14898 14898 11 0 76735000 9697700 GFGFVTFENIDDAK SEVVVVKDRETQRSRGFGFVTFENIDDAKD RGFGFVTFENIDDAKDAMMAMNGKSVDGRQ R G F A K D 1 0 1 2 0 0 1 2 0 1 0 1 0 3 0 0 1 0 0 1 0 0 14 0 1558.7304 Q14011 Q14011 48 61 CIRBP Cold-inducible RNA-binding protein yes yes 2 0.0031442 96.009 By matching By MS/MS 7.33 0.471 2 1 1 2 14588000 0 1024200 13564000 4374 1280 4558 18002;18003;18004 14899 14899 1 0 588080 2281300 GFGFVTFSSMAEVDAAMAAR TDCVVMRDPASKRSRGFGFVTFSSMAEVDA TFSSMAEVDAAMAARPHSIDGRVVEPKRAV R G F A R P 5 1 0 1 0 0 1 2 0 0 0 0 2 3 0 2 1 0 0 2 0 0 20 0 2063.9445 P22626 P22626 63 82 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 9.0639E-05 80.469 By MS/MS By matching 6 0 2 1 1 4093000 0 1417000 2676100 4375 632 4559 18005;18006 14900 14900 279;280 1 0 490510 400370 GFGFVTFSSMAEVDAAMAARPHSIDGR TDCVVMRDPASKRSRGFGFVTFSSMAEVDA VDAAMAARPHSIDGRVVEPKRAVAREESGK R G F G R V 5 2 0 2 0 0 1 3 1 1 0 0 2 3 1 3 1 0 0 2 0 0 27 1 2826.3218 P22626 P22626 63 89 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 4 5.2414E-32 127.38 By MS/MS By MS/MS 5.62 0.484 3 5 6 2 106220000 0 85108000 21113000 4376 632 4560;4561;4562 18007;18008;18009;18010;18011;18012;18013;18014 14901;14902;14903;14904;14905;14906;14907;14908;14909 14909 279;280 9 0 28711000 2994300 GFGFVTYATVEEVDAAMNAR TDCVVMRDPNTKRSRGFGFVTYATVEEVDA TYATVEEVDAAMNARPHKVDGRVVEPKRAV R G F A R P 4 1 1 1 0 0 2 2 0 0 0 0 1 2 0 0 2 0 1 3 0 0 20 0 2146.9994 P09651 P09651 56 75 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 2;3 1.2307E-70 235.21 By MS/MS By MS/MS 4.41 1.82 2 2 1 1 4 7 7 10 58746000 0 20098000 38648000 4377 490 4563;4564 18015;18016;18017;18018;18019;18020;18021;18022;18023;18024;18025;18026;18027;18028;18029;18030;18031 14910;14911;14912;14913;14914;14915;14916;14917;14918;14919;14920;14921;14922 14918 199 12 0 6787300 6596900 GFGFVTYATVEEVDAAMNARPHK TDCVVMRDPNTKRSRGFGFVTYATVEEVDA TVEEVDAAMNARPHKVDGRVVEPKRAVSRE R G F H K V 4 1 1 1 0 0 2 2 1 0 0 1 1 2 1 0 2 0 1 3 0 0 23 1 2509.206 P09651 P09651 56 78 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 2;3;4 3.0933E-29 180.84 By MS/MS By MS/MS 5.18 1.25 1 1 2 4 8 1 8 9 448710000 0 301970000 146750000 4378 490 4565;4566 18032;18033;18034;18035;18036;18037;18038;18039;18040;18041;18042;18043;18044;18045;18046;18047;18048 14923;14924;14925;14926;14927;14928;14929;14930;14931;14932;14933;14934;14935;14936;14937;14938;14939 14928 199 17 0 102200000 21792000 GFGFVYFQNHDAADK EKAEIIADKQSGKKRGFGFVYFQNHDAADK GFGFVYFQNHDAADKAAVVKFHPIQGHRVE R G F D K A 2 0 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 15 0 1714.774 Q13151 Q13151 140 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2;3 0.00028311 137.89 By MS/MS By MS/MS 5.44 1.26 1 1 2 3 2 1 8 150480000 0 2062900 148420000 4379 1225 4567 18049;18050;18051;18052;18053;18054;18055;18056;18057 14940;14941;14942;14943;14944 14941 4 0 714100 22276000 GFGGIGGILR EIVTDKSQEGSQFVKGFGGIGGILRYRVDF SQFVKGFGGIGGILRYRVDFQGMEYQGGDD K G F L R Y 0 1 0 0 0 0 0 5 0 2 1 0 0 1 0 0 0 0 0 0 0 0 10 0 945.5396 P62495 P62495 405 414 ETF1 Eukaryotic peptide chain release factor subunit 1 yes yes 2 0.00055168 129.4 By MS/MS By MS/MS 4.86 1.81 1 1 2 2 1 4 3 21318000 0 13102000 8216300 4380 1028 4568 18058;18059;18060;18061;18062;18063;18064 14945;14946;14947 14945 3 0 3709300 1192500 GFGIGELVWGK ATKAGDDEPEYEDGRGFGIGELVWGKLRGF EDGRGFGIGELVWGKLRGFSWWPGRIVSWW R G F G K L 0 0 0 0 0 0 1 4 0 1 1 1 0 1 0 0 0 1 0 1 0 0 11 0 1161.6182 Q9Y6K1 Q9Y6K1 289 299 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes yes 2 0.031062 78.334 By MS/MS 2 0 1 1 4066400 0 0 4066400 4381 2313 4569 18065 14948 14948 1 0 0 918920 GFGSEEGSR SIHKLKEKAKKRKGRGFGSEEGSRARMRED KKRKGRGFGSEEGSRARMREDYDSVEQDGD R G F S R A 0 1 0 0 0 0 2 3 0 0 0 0 0 1 0 2 0 0 0 0 0 0 9 0 924.39372 Q9Y5S9 Q9Y5S9 39 47 RBM8A RNA-binding protein 8A yes yes 2 0.00051371 125.25 By MS/MS By MS/MS 7 0 2 1 1 14994000 0 2199100 12795000 4382 2302 4570 18066;18067 14949;14950 14950 2 0 1262700 2270400 GFGYGQGAGALVHAQ EIYCKGCYAKNFGPKGFGYGQGAGALVHAQ GFGYGQGAGALVHAQ_______________ K G F A Q - 3 0 0 0 0 2 0 5 1 0 1 0 0 1 0 0 0 0 1 1 0 0 15 0 1431.6895 Q16527 Q16527 179 193 CSRP2 Cysteine and glycine-rich protein 2 yes yes 2 0.0011507 96.89 By MS/MS By MS/MS By MS/MS 7 0 3 1 1 1 54047000 17480000 11974000 24593000 4383 1386 4571 18068;18069;18070 14951;14952;14953 14952 3 37674000 6875400 4363800 GFGYVTFSMLEDVQR KQCFVVTEKGSKACRGFGYVTFSMLEDVQR GFGYVTFSMLEDVQRALKEITTFEGCKINV R G F Q R A 0 1 0 1 0 1 1 2 0 0 1 0 1 2 0 1 1 0 1 2 0 0 15 0 1747.824 Q9NW13 Q9NW13 46 60 RBM28 RNA-binding protein 28 yes yes 2 0.0002915 122.51 By MS/MS 2 0 1 1 4878500 0 0 4878500 4384 2075 4572 18071 14954 14954 1 0 0 1102400 GFHQVPFAPIVFIER SLDIQVPNFPADETKGFHQVPFAPIVFIER GFHQVPFAPIVFIERTDFKEEPEPGFKRLA K G F E R T 1 1 0 0 0 1 1 1 1 2 0 0 0 3 2 0 0 0 0 2 0 0 15 0 1755.9461 P47897 P47897 602 616 QARS Glutamine--tRNA ligase yes yes 3 0.014442 55.186 By matching By MS/MS 2.5 0.5 1 1 1 1 6190700 0 1420100 4770600 4385 838 4573 18072;18073 14955 14955 1 0 639490 925280 GFIAGIDLK NPLYKERHQVQLLGRGFIAGIDLKQQKREQ VQLLGRGFIAGIDLKQQKREQSRFYGDLME R G F L K Q 1 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 9 0 932.53312 Q9BUQ8 Q9BUQ8 302 310 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.016447 84.568 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 17066000 0 4202100 12864000 4386 1909 4574 18074;18075;18076;18077 14956;14957 14957 2 0 1892200 2826800 GFIYVHKPPVHIR CSYKASSGLLYPLERGFIYVHKPPVHIRFD ERGFIYVHKPPVHIRFDEISFVNFARGTTT R G F I R F 0 1 0 0 0 0 0 1 2 2 0 1 0 1 2 0 0 0 1 2 0 0 13 1 1561.8882 Q08945 Q08945 358 370 SSRP1 FACT complex subunit SSRP1 yes yes 2;3 0.00095546 151.97 By MS/MS 2.67 0.471 1 2 3 63767000 0 0 63767000 4387 1186 4575 18078;18079;18080 14958;14959;14960 14960 3 0 0 12694000 GFKDQIYDIFQK IKMFVLDEADEMLSRGFKDQIYDIFQKLNS LSRGFKDQIYDIFQKLNSNTQVVLLSATMP R G F Q K L 0 0 0 2 0 2 0 1 0 2 0 2 0 2 0 0 0 0 1 0 0 0 12 1 1500.7613 P60842 P60842 191 202 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2 3.8826E-11 178.46 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 61090000 0 17390000 43700000 4388 967 4576 18081;18082;18083 14961;14962 14962 2 0 4482600 6335400 GFKEQIYDVYR IKMLVLDEADEMLNKGFKEQIYDVYRYLPP MLNKGFKEQIYDVYRYLPPATQVVLISATL K G F Y R Y 0 1 0 1 0 1 1 1 0 1 0 1 0 1 0 0 0 0 2 1 0 0 11 1 1416.7038 P38919 P38919 196 206 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2;3 1.1129E-25 200.09 By MS/MS 5 0 2 2 50036000 0 50036000 0 4389 775 4577 18084;18085 14963;14964 14964 2 0 12898000 0 GFLEDLAPPER LASDAIINENYDYLKGFLEDLAPPERSSLI DYLKGFLEDLAPPERSSLIQDWETSGLVYL K G F E R S 1 1 0 1 0 0 2 1 0 0 2 0 0 1 2 0 0 0 0 0 0 0 11 0 1242.6245 P52948 P52948 1669 1679 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 0.0039352 104.01 By MS/MS 2 0 1 1 10609000 0 0 10609000 4390 916 4578 18086 14965 14965 1 0 0 2397500 GFLNSSELSGLPAGPDR MHCQTLKDQPSAYSKGFLNSSELSGLPAGP LNSSELSGLPAGPDREGSLKDQLALAIGKL K G F D R E 1 1 1 1 0 0 1 3 0 0 3 0 0 1 2 3 0 0 0 0 0 0 17 0 1715.8479 P43897 P43897 162 178 TSFM Elongation factor Ts, mitochondrial yes yes 2 9E-37 211.26 By matching By MS/MS 4.5 1.12 1 1 1 1 1 3 27782000 0 1586100 26196000 4391 818 4579 18087;18088;18089;18090 14966 14966 1 0 676170 3960600 GFLSGLLDNVK GELPLSKSYSSGNRKGFLSGLLDNVKQELA GNRKGFLSGLLDNVKQELAKNKEMKESIKK K G F V K Q 0 0 1 1 0 0 0 2 0 0 3 1 0 1 0 1 0 0 0 1 0 0 11 0 1161.6394 O43615 O43615 58 68 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 2 0.023441 82.287 By MS/MS 5 0 1 1 962980 0 0 962980 4392 203 4580 18091 14967 14967 1 0 0 134320 GFLSGPMGSGMR PGIGAILERSIDMDRGFLSGPMGSGMRERI MDRGFLSGPMGSGMRERIGSKGNQIFVRNL R G F M R E 0 1 0 0 0 0 0 4 0 0 1 0 2 1 1 2 0 0 0 0 0 0 12 0 1195.5478 Q9P2K5 Q9P2K5 504 515 MYEF2 Myelin expression factor 2 yes yes 2 0.00021426 131.62 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 26267000 0 12806000 13460000 4393 2125 4581 18092;18093;18094 14968;14969;14970 14970 3 0 4810500 2610600 GFLTSSFWR FLEKCLQHKDIPVPKGFLTSSFWRS_____ DIPVPKGFLTSSFWRS______________ K G F W R S 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 2 1 1 0 0 0 0 9 0 1099.5451 Q53GS7 Q53GS7 689 697 GLE1 Nucleoporin GLE1 yes yes 2 3.4046E-07 157.21 By matching By MS/MS 2.5 0.5 1 1 1 1 9340100 0 562470 8777700 4394 1425 4582 18095;18096 14971 14971 1 0 253290 1702500 GFLYFNR PVDSFAPFHNVNCPRGFLYFNRQGELRISV FHNVNCPRGFLYFNRQGELRISVLPAYLSY R G F N R Q 0 1 1 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 1 0 0 0 7 0 915.46029 Q10570 Q10570 986 992 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.010865 119.23 By MS/MS 1.5 0.5 1 1 2 2177200 0 2177200 0 4395 1194 4583 18097;18098 14972 14972 1 0 1001100 0 GFNEGLWEIDNNPK YSENKEKYGKPNKRKGFNEGLWEIDNNPKV KGFNEGLWEIDNNPKVKFSSQQAATKQSNA K G F P K V 0 0 3 1 0 0 2 2 0 1 1 1 0 1 1 0 0 1 0 0 0 0 14 0 1631.758 O75475 O75475 76 89 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.00040736 125.74 By MS/MS 3 0 1 1 12786000 0 0 12786000 4396 262 4584 18099 14973 14973 1 0 0 2479800 GFNLPYQDAR EQLRMEETPTEYLQRGFNLPYQDARKCLGR EYLQRGFNLPYQDARKCLGRFGLESHAHTI R G F A R K 1 1 1 1 0 1 0 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 10 0 1179.5673 Q8NE71 Q8NE71 714 723 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 0.0041356 99.802 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 34520000 0 11609000 22911000 4397 1638 4585 18100;18101;18102 14974;14975 14975 2 0 5227800 5064800 GFPIKEDFLEQSEQLFGAK GPGAFRLAARMYLQKGFPIKEDFLEQSEQL KEDFLEQSEQLFGAKPMSLTGMKGEDLANI K G F A K P 1 0 0 1 0 2 3 2 0 1 2 2 0 3 1 1 0 0 0 0 0 0 19 1 2182.0946 CON__P28800;P08697 CON__P28800 172 190 SERPINF2 Alpha-2-antiplasmin yes no 3 0.0037886 56.936 By MS/MS 4 0 1 1 3506300 3506300 0 0 + 4398 63 4586 18103 14976 14976 1 2735500 0 0 GFPTIYFSPANK MDATANDVPSPYEVRGFPTIYFSPANKKLN EVRGFPTIYFSPANKKLNPKKYEGGRELSD R G F N K K 1 0 1 0 0 0 0 1 0 1 0 1 0 2 2 1 1 0 1 0 0 0 12 0 1340.6765 P30101 P30101 449 460 PDIA3 Protein disulfide-isomerase A3 yes yes 2 9.0167E-06 123.29 By MS/MS By MS/MS 4 0 2 1 1 14228000 0 0 14228000 4399 711 4587 18104;18105 14977;14978 14977 2 0 0 2323800 GFQEVVTPNIFNSR YNALIEFIRSEYRKRGFQEVVTPNIFNSRL RGFQEVVTPNIFNSRLWMTSGHWQHYSENM R G F S R L 0 1 2 0 0 1 1 1 0 1 0 0 0 2 1 1 1 0 0 2 0 0 14 0 1606.8104 P26639 P26639 368 381 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 1.3275E-07 171.74 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 33678000 0 9577600 24100000 4400 672 4588 18106;18107;18108;18109;18110 14979;14980;14981 14981 3 0 4083000 4452100 GFQQISFVNSIATSK QVNHRWEVCLTMSEKGFQQISFVNSIATSK GFQQISFVNSIATSKGGRHVDYVADQIVTK K G F S K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 3 1 0 0 1 0 0 15 0 1625.8413 P11388 P11388 307 321 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 8.8287E-05 151.98 By MS/MS By MS/MS By MS/MS 1.29 0.452 5 2 2 2 3 118390000 4372900 5411700 108600000 4401 524 4589 18111;18112;18113;18114;18115;18116;18117 14982;14983;14984;14985;14986 14984 5 4372900 2548000 23441000 GFQQISFVNSIATTK LANERWDVCLTLSEKGFQQISFVNSIATTK GFQQISFVNSIATTKGGRHVDYVVDQVVGK K G F T K G 1 0 1 0 0 2 0 1 0 2 0 1 0 2 0 2 2 0 0 1 0 0 15 0 1639.857 Q02880 Q02880 328 342 TOP2B DNA topoisomerase 2-beta yes yes 2;3 2.4569E-07 167.18 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 38955000 0 5426700 33529000 4402 1150 4590 18118;18119;18120;18121;18122 14987;14988;14989;14990 14988 4 0 2652500 7342500 GFSDKLDFLEGDQKPLAQR QEKAHMMNAIKKYQKGFSDKLDFLEGDQKP KLDFLEGDQKPLAQRKKAGAKGQQMRKGPS K G F Q R K 1 1 0 3 0 2 1 2 0 0 3 2 0 2 1 1 0 0 0 0 0 0 19 2 2163.096 Q99848 Q99848 205 223 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 3;4 2.7519E-09 138.07 By MS/MS 5 0 2 2 26203000 0 0 26203000 4403 1866 4591 18123;18124 14991;14992 14991 2 0 0 3654800 GFSEEHNTWEPEK RRVVKGQVEYLLKWKGFSEEHNTWEPEKNL WKGFSEEHNTWEPEKNLDCPELISEFMKKY K G F E K N 0 0 1 0 0 0 4 1 1 0 0 1 0 1 1 1 1 1 0 0 0 0 13 0 1588.6794 P45973 P45973 43 55 CBX5 Chromobox protein homolog 5 yes yes 2;3 1.8753E-24 196.11 By MS/MS 6.5 0.5 2 2 4 276320000 0 0 276320000 4404 820 4592 18125;18126;18127;18128 14993;14994;14995;14996 14995 4 0 0 48532000 GFSEGLWEIENNPTVK YEESKEKFGKPNKRKGFSEGLWEIENNPTV FSEGLWEIENNPTVKASGYQSSQKKSCVEE K G F V K A 0 0 2 0 0 0 3 2 0 1 1 1 0 1 1 1 1 1 0 1 0 0 16 0 1818.8788 P51858 P51858 81 96 HDGF Hepatoma-derived growth factor yes yes 2 0.0026546 87.777 By matching By MS/MS 6.33 0.471 2 1 1 2 15723000 0 2159300 13564000 4405 899 4593 18129;18130;18131 14997;14998 14998 2 0 747480 2205000 GFSELSTLEVLPQVYNVR CIEQVQRTCQALAARGFSELSTLEVLPQVY ELSTLEVLPQVYNVRTVSLPPPDLGTGTDG R G F V R T 0 1 1 0 0 1 2 1 0 0 3 0 0 1 1 2 1 0 1 3 0 0 18 0 2050.0735 Q96FX7 Q96FX7 224 241 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 3 0.0002135 87.647 By MS/MS By matching 6 0 2 1 1 5792400 0 2126400 3666000 4406 1785 4594 18132;18133 14999 14999 1 0 736100 548470 GFSLEELR RCPTVRYHTKVRAGRGFSLEELRVAGIHKK TKVRAGRGFSLEELRVAGIHKKVARTIGIS R G F L R V 0 1 0 0 0 0 2 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 949.4869 P26373 P26373 75 82 RPL13 60S ribosomal protein L13 yes yes 2 5.6115E-09 168.74 By matching By MS/MS By MS/MS 4.83 2.91 3 1 1 1 2 2 1 1 1 4 7 290090000 1376800 34564000 254150000 4407 669 4595 18134;18135;18136;18137;18138;18139;18140;18141;18142;18143;18144;18145 15000;15001;15002;15003;15004;15005;15006;15007;15008;15009;15010;15011 15006 12 1376800 15356000 49380000 GFSLLATEDK EELGFRPEYSASQLKGFSLLATEDKEALKK ASQLKGFSLLATEDKEALKKQLPGVKSEGK K G F D K E 1 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1079.5499 P09874 P09874 183 192 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00051552 128.38 By MS/MS By MS/MS 2 0 2 1 1 36169000 0 7261500 28908000 4408 492 4596 18146;18147 15012;15013 15013 2 0 3270000 6532600 GFSLLATEDKEALK EELGFRPEYSASQLKGFSLLATEDKEALKK KGFSLLATEDKEALKKQLPGVKSEGKRKGD K G F L K K 2 0 0 1 0 0 2 1 0 0 3 2 0 1 0 1 1 0 0 0 0 0 14 1 1520.8086 P09874 P09874 183 196 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 2.4366E-10 176.42 By MS/MS By MS/MS 2.22 0.916 2 4 2 1 2 7 84659000 0 15881000 68778000 4409 492 4597 18148;18149;18150;18151;18152;18153;18154;18155;18156 15014;15015;15016;15017 15015 4 0 7151600 14970000 GFSLLATEDKEALKK EELGFRPEYSASQLKGFSLLATEDKEALKK GFSLLATEDKEALKKQLPGVKSEGKRKGDE K G F K K Q 2 0 0 1 0 0 2 1 0 0 3 3 0 1 0 1 1 0 0 0 0 0 15 2 1648.9036 P09874 P09874 183 197 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 8.1261E-23 196.27 By MS/MS By MS/MS 3.19 1.76 4 5 4 3 2 2 1 5 16 1301800000 0 230060000 1071800000 4410 492 4598 18157;18158;18159;18160;18161;18162;18163;18164;18165;18166;18167;18168;18169;18170;18171;18172;18173;18174;18175;18176;18177 15018;15019;15020;15021;15022;15023;15024;15025;15026;15027;15028;15029;15030;15031;15032;15033;15034;15035;15036;15037;15038;15039 15031 22 0 101150000 229840000 GFSSGSAVVSGGSR SCKSRGRGGGGGGFRGFSSGSAVVSGGSRR RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G F S R R 1 1 0 0 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 2 0 0 14 0 1253.6 CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 21 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 6.8173E-73 246.59 By MS/MS By MS/MS By MS/MS 5.88 2.99 3 3 3 3 3 3 3 3 4 5 13 9 11 8976600000 6925400000 241610000 1809600000 + 4411 65;66;86 4599 18178;18179;18180;18181;18182;18183;18184;18185;18186;18187;18188;18189;18190;18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201;18202;18203;18204;18205;18206;18207;18208;18209;18210 15040;15041;15042;15043;15044;15045;15046;15047;15048;15049;15050;15051;15052;15053;15054;15055;15056;15057;15058;15059;15060;15061;15062;15063;15064;15065;15066;15067;15068;15069;15070;15071;15072;15073;15074;15075;15076;15077;15078;15079;15080;15081;15082;15083;15084;15085 15077 46 7448400000 227640000 849540000 GFSSGSAVVSGGSRR SCKSRGRGGGGGGFRGFSSGSAVVSGGSRR GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG R G F R R S 1 2 0 0 0 0 0 4 0 0 0 0 0 1 0 5 0 0 0 2 0 0 15 1 1409.7011 CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 21 35 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.5039E-107 267.02 By MS/MS By matching By matching 5.91 3.18 2 2 3 2 1 2 2 1 2 5 18 1 3 287680000 278020000 1037800 8622400 + 4412 65;66;86 4600 18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221;18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232 15086;15087;15088;15089;15090;15091;15092;15093;15094;15095;15096;15097;15098 15097 13 338190000 5250600 5943100 GFSTWLK LREVWFFGLQYQDTKGFSTWLKLNKKVTAQ GLQYQDTKGFSTWLKLNKKVTAQDVRKESP K G F L K L 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 1 0 0 0 0 7 0 837.43849 P26038 P26038 54 60 MSN Moesin yes yes 2 0.070652 72.355 By MS/MS 3 0 1 1 13176000 0 13176000 0 4413 664 4601 18233 15099 15099 1 0 5617000 0 GFSVVADTPELQR SQVRYKEEFEKNKGKGFSVVADTPELQRIK GKGFSVVADTPELQRIKKTQDQISNIKYHE K G F Q R I 1 1 0 1 0 1 1 1 0 0 1 0 0 1 1 1 1 0 0 2 0 0 13 0 1417.7201 Q14847 Q14847 97 109 LASP1 LIM and SH3 domain protein 1 yes yes 2 7.8992E-05 154.85 By MS/MS 6 0.816 1 1 1 3 46905000 0 0 46905000 4414 1322 4602 18234;18235;18236 15100;15101 15100 2 0 0 7428700 GFTLGVEDILVKPK TCLARLFTAYLQLYRGFTLGVEDILVKPKA RGFTLGVEDILVKPKADVKRQRIIEESTHC R G F P K A 0 0 0 1 0 0 1 2 0 1 2 2 0 1 1 0 1 0 0 2 0 0 14 1 1514.8708 O95602 O95602 794 807 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.014214 62.042 By MS/MS 1 0 1 1 2831200 0 0 2831200 4415 330 4603 18237 15102 15102 1 0 0 610030 GFTLNDAANSR TQAMEVKAFAETHIKGFTLNDAANSRLIIT THIKGFTLNDAANSRLIITQVRRDYLKEAV K G F S R L 2 1 2 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 0 1164.5523 P42704 P42704 1099 1109 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0095673 92.051 By matching By MS/MS 1.33 0.471 2 1 1 2 11030000 1888900 0 9141500 4416 808 4604 18238;18239;18240 15103 15103 1 1888900 0 2027800 GFVEFAAKPPAR KAVVVVDDRGRATGKGFVEFAAKPPARKAL TGKGFVEFAAKPPARKALERCGDGAFLLTT K G F A R K 3 1 0 0 0 0 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 12 1 1288.6928 Q8WXF1 Q8WXF1 199 210 PSPC1 Paraspeckle component 1 yes yes 2;3 0.00034582 147.51 By matching By MS/MS By MS/MS 3.92 0.759 4 5 3 1 5 6 171800000 1118600 74194000 96493000 4417 1695 4605 18241;18242;18243;18244;18245;18246;18247;18248;18249;18250;18251;18252 15104;15105;15106;15107;15108;15109;15110;15111;15112 15111 9 872670 25358000 17322000 GFVFITFK EAIELPMDPKLNKRRGFVFITFKEEEPVKK PKLNKRRGFVFITFKEEEPVKKVLEKKFHT R G F F K E 0 0 0 0 0 0 0 1 0 1 0 1 0 3 0 0 1 0 0 1 0 0 8 0 957.53239 Q99729 Q99729 196 203 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2 0.011508 91.906 By matching By MS/MS By MS/MS 5.33 1.25 1 2 2 1 1 2 3 30358000 323830 9832500 20202000 4418 1861 4606 18253;18254;18255;18256;18257;18258 15113;15114;15115;15116 15113 4 373620 2691800 2912500 GFVFITFKEEEPVKK EAIELPMDPKLNKRRGFVFITFKEEEPVKK GFVFITFKEEEPVKKVLEKKFHTVSGSKCE R G F K K V 0 0 0 0 0 0 3 1 0 1 0 3 0 3 1 0 1 0 0 2 0 0 15 2 1796.9713 Q99729 Q99729 196 210 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 3;4 0.0016541 82.908 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 35530000 0 21519000 14011000 4419 1861 4607 18259;18260;18261;18262;18263 15117;15118;15119 15117 3 0 7230000 1973400 GFVLQDTVEQLR QTKITQDIFQQLLKRGFVLQDTVEQLRCEH LKRGFVLQDTVEQLRCEHCARFLADRFVEG R G F L R C 0 1 0 1 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1403.7409 P56192 P56192 377 388 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 6.0393E-06 160.36 By MS/MS By MS/MS 2 0 2 1 1 14604000 0 4408200 10196000 4420 949 4608 18264;18265 15120;15121 15120 2 0 1985100 2304100 GFVVINQK KIIELKRKVCGDSDKGFVVINQKGIDPFSL VCGDSDKGFVVINQKGIDPFSLDALSKEGI K G F Q K G 0 0 1 0 0 1 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 903.5178 P40227;Q92526 P40227 288 295 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 2 0.01434 88.734 By MS/MS 4 0 1 1 3962200 0 3962200 0 4421 783 4609 18266 15122 15122 1 0 1314900 0 GFWYDAEISR QVVMLNYNPDNPKERGFWYDAEISRKRETR NPKERGFWYDAEISRKRETRTARELYANVV R G F S R K 1 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 10 0 1242.5669 Q96T88 Q96T88 236 245 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.0004679 136.27 By MS/MS 2 0.816 1 1 1 3 17725000 0 0 17725000 4422 1841 4610 18267;18268;18269 15123;15124 15123 2 0 0 3785100 GFYDKDSSGWSSSK GRYIPPHLRNREATKGFYDKDSSGWSSSKD KGFYDKDSSGWSSSKDKDAYSSFGSRSDSR K G F S K D 0 0 0 2 0 0 0 2 0 0 0 2 0 1 0 5 0 1 1 0 0 0 14 1 1549.6685 O00571 O00571 51 64 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2;3 0.0040286 145.09 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 30624000 0 10978000 19646000 4423 131 4611 18270;18271;18272;18273 15125;15126;15127 15127 3 0 4716500 3810400 GFYDPPR HRYIEIFRSSRSEIKGFYDPPRRLLGQRPG RSSRSEIKGFYDPPRRLLGQRPGPYDRPIG K G F P R R 0 1 0 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 1 0 0 0 7 0 850.39735 P31942 P31942 98 104 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 0.060859 74.717 By matching By MS/MS 5.67 0.471 1 2 2 1 30000000 0 10716000 19284000 4424 721 4612 18274;18275;18276 15128 15128 1 0 3546000 2885100 GFYPSDIAVEWESNGQPENNYK DELTKNQVSLTCLVKGFYPSDIAVEWESNG AVEWESNGQPENNYKTTPPVLDSDGSFFLY K G F Y K T 1 0 3 1 0 1 3 2 0 1 0 1 0 1 2 2 0 1 2 1 0 0 22 0 2543.1241 P0DOX5;P01857;P01861 P0DOX5 373 394 IGHG1;IGHG4 Ig gamma-1 chain C region;Ig gamma-4 chain C region no no 2;3 5.5468E-93 245.03 By MS/MS 9 0 2 2 14754000 14754000 0 0 4425 381;384 4613 18277;18278 15129;15130 15130 2 8281700 0 0 GGAAVDPDSGLEHSAHVLEK EGINKSEKRMKLTLKGGAAVDPDSGLEHSA DPDSGLEHSAHVLEKGGKVFSATLGLVDIV K G G E K G 3 0 0 2 0 0 2 3 2 0 2 1 0 0 1 2 0 0 0 2 0 0 20 0 1987.9599 P09874 P09874 529 548 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 2.2762E-13 146.59 By MS/MS By MS/MS 2 0.84 5 8 3 1 5 12 1808900000 0 178220000 1630700000 4426 492 4614 18279;18280;18281;18282;18283;18284;18285;18286;18287;18288;18289;18290;18291;18292;18293;18294;18295 15131;15132;15133;15134;15135;15136;15137;15138;15139;15140;15141;15142;15143;15144;15145;15146 15145 16 0 81041000 361820000 GGAGVQVHQLLAGSGGAR RQLCCSPGRLAVLERGGAGVQVHQLLAGSG GVQVHQLLAGSGGARTPKCIKLGKNMKIHS R G G A R T 3 1 0 0 0 2 0 6 1 0 2 0 0 0 0 1 0 0 0 2 0 0 18 0 1633.8649 Q9UII4 Q9UII4 69 86 HERC5 E3 ISG15--protein ligase HERC5 yes yes 3 0.012095 47.204 By MS/MS 2 0 1 1 6288800 0 0 6288800 4427 2165 4615 18296 15147 15147 1 0 0 1421100 GGALLTSPSGPGYHIMLPFITTFR SIHKIEEGHLAVYYRGGALLTSPSGPGYHI GPGYHIMLPFITTFRSVQTTLQTDEVKNVP R G G F R S 1 1 0 0 0 0 0 4 1 2 3 0 1 2 3 2 3 0 1 0 0 0 24 0 2532.3199 O75477 O75477 39 62 ERLIN1 Erlin-1 yes yes 3 9.5901E-06 76.186 By MS/MS 5 0 1 1 2547900 0 2547900 0 4428 263 4616 18297 15148 15148 1 0 656770 0 GGALLTSTSGPGFHLMLPFITSYK AVHKIEEGHIGVYYRGGALLTSTSGPGFHL GPGFHLMLPFITSYKSVQTTLQTDEVKNVP R G G Y K S 1 0 0 0 0 0 0 4 1 1 4 1 1 2 2 3 3 0 1 0 0 0 24 0 2494.293 O94905 O94905 37 60 ERLIN2 Erlin-2 yes yes 3 0.0031195 44.258 By MS/MS 5.5 0.5 1 1 2 5889800 0 5889800 0 4429 304 4617 18298;18299 15149 15149 1 0 1849700 0 GGAPAEGEGAAETLPEASR SEPQPEEGSPAGGQKGGAPAEGEGAAETLP AEGEGAAETLPEASRAVENGCCTPKEGRGA K G G S R A 5 1 0 0 0 0 4 4 0 0 1 0 0 0 2 1 1 0 0 0 0 0 19 0 1768.8228 Q9Y6K1 Q9Y6K1 112 130 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes yes 2 6.9688E-09 124.81 By MS/MS 2 0 1 1 5241200 0 0 5241200 4430 2313 4618 18300 15150 15150 1 0 0 1184400 GGDDLGTEIANTLYR FVDCSASATPEFEGRGGDDLGTEIANTLYR GGDDLGTEIANTLYRIFNNKSSVDLKTLCI R G G Y R I 1 1 1 2 0 0 1 3 0 1 2 0 0 0 0 0 2 0 1 0 0 0 15 0 1593.7635 Q15024 Q15024 97 111 EXOSC7 Exosome complex component RRP42 yes yes 2 1.8549E-17 189.57 By MS/MS 6 0 1 1 12012000 0 0 12012000 4431 1334 4619 18301 15151 15151 1 0 0 1797100 GGDIMLWNFGIK AWHPTHPSTVAVGSKGGDIMLWNFGIKDKP GSKGGDIMLWNFGIKDKPTFIKGIGAGGSI K G G I K D 0 0 1 1 0 0 0 3 0 2 1 1 1 1 0 0 0 1 0 0 0 0 12 0 1349.6802 Q92466 Q92466 133 144 DDB2 DNA damage-binding protein 2 yes yes 2 0.0083462 96.948 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 5325400 0 2538400 2787000 4432 1704 4620 18302;18303;18304 15152;15153 15153 2 0 654330 421020 GGDLMAYDR SRARNLPLPPPPPPRGGDLMAYDRRGRPGD PPPPPRGGDLMAYDRRGRPGDRYDGMVGFS R G G D R R 1 1 0 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 9 0 996.43348 P61978 P61978 317 325 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 0.0029715 101.72 By matching By MS/MS 2.83 1.34 2 1 3 2 4 80016000 2575800 0 77440000 4433 1002 4621;4622 18305;18306;18307;18308;18309;18310 15154;15155 15155 477 2 2177700 0 13270000 GGDLMAYDRR SRARNLPLPPPPPPRGGDLMAYDRRGRPGD PPPPRGGDLMAYDRRGRPGDRYDGMVGFSA R G G R R G 1 2 0 2 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 10 1 1152.5346 P61978 P61978 317 326 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 0.0010803 133.23 By MS/MS 4 0 1 1 19944000 0 19944000 0 4434 1002 4623 18311 15156 15156 1 0 6618600 0 GGDSIGETPTPGASK PGHGSGWAETPRTDRGGDSIGETPTPGASK GGDSIGETPTPGASKRKSRWDETPASQMGG R G G S K R 1 0 0 1 0 0 1 4 0 1 0 1 0 0 2 2 2 0 0 0 0 0 15 0 1372.647 O75533 O75533 319 333 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.005166 83.226 By MS/MS 2 0 1 1 4073500 0 4073500 0 4435 270 4624 18312 15157 15157 1 0 1834300 0 GGEADNLDEFLKEFENPEVPR CLTPLVPEDLRKRRKGGEADNLDEFLKEFE LDEFLKEFENPEVPREDQQQQHQQRDVIDE K G G P R E 1 1 2 2 0 0 5 2 0 0 2 1 0 2 2 0 0 0 0 1 0 0 21 1 2404.1183 O60216 O60216 407 427 RAD21 Double-strand-break repair protein rad21 homolog yes yes 3 0.00018959 71.853 By MS/MS 2.5 0.5 1 1 2 3413700 0 0 3413700 4436 219 4625 18313;18314 15158 15158 1 0 0 692490 GGELVYTDSEAR ETGLCLLPLTDKAAKGGELVYTDSEARDVF AAKGGELVYTDSEARDVFEKATVSAPFGKF K G G A R D 1 1 0 1 0 0 2 2 0 0 1 0 0 0 0 1 1 0 1 1 0 0 12 0 1295.5994 Q15149 Q15149 3028 3039 PLEC Plectin yes yes 2 0.016143 87.298 By MS/MS By MS/MS 1 0 2 1 1 36440000 0 17832000 18608000 4437 1348 4626 18315;18316 15159;15160 15159 2 0 8716000 4009400 GGFCNFMHLKPISR REACCRQYEMGECTRGGFCNFMHLKPISRE RGGFCNFMHLKPISRELRRELYGRRRKKHR R G G S R E 0 1 1 0 1 0 0 2 1 1 1 1 1 2 1 1 0 0 0 0 0 0 14 1 1662.8123 P0DN76;Q01081 P0DN76 166 179 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2;4 0.0031373 125.97 By MS/MS 6 0 2 2 13215000 0 0 13215000 4438 502 4627 18317;18318 15161;15162 15161 2 0 0 1977200 GGFLYLNR PITAVSLMEALSADKGGFLYLNRVLVILLQ EALSADKGGFLYLNRVLVILLQTLLQDEIA K G G N R V 0 1 1 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 1 0 0 0 8 0 938.4974 Q9UIG0 Q9UIG0 646 653 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0013988 116.35 By MS/MS 1 0 1 1 15403000 0 0 15403000 4439 2164 4628 18319 15163 15163 1 0 0 3318900 GGGAFVQNSQPVAVR GQHPAASPTHPSAIRGGGAFVQNSQPVAVR GGGAFVQNSQPVAVRGGGGKQV________ R G G V R G 2 1 1 0 0 2 0 3 0 0 0 0 0 1 1 1 0 0 0 3 0 0 15 0 1485.7688 P33176 P33176 942 956 KIF5B Kinesin-1 heavy chain yes yes 2 1.6311E-16 123.79 By MS/MS 2 0 1 1 0 0 0 0 4440 730 4629 18320 15164 15164 1 0 0 0 GGGEGNVDETGNNPSVSLK DNDVEVIKVWNSRSRGGGEGNVDETGNNPS GNVDETGNNPSVSLKLEESKATSSSNPSSP R G G L K L 0 0 3 1 0 0 2 5 0 0 1 1 0 0 1 2 1 0 0 2 0 0 19 0 1829.8391 P46100 P46100 1964 1982 ATRX Transcriptional regulator ATRX yes yes 2 2.4901E-13 173.68 By MS/MS 1 0 1 1 8517300 0 0 8517300 4441 825 4630 18321 15165 15165 1 0 0 1835200 GGGEQETQELASK RGGGGGPCGFQPASRGGGEQETQELASKRL SRGGGEQETQELASKRLDIQNKRFYLDVKQ R G G S K R 1 0 0 0 0 2 3 3 0 0 1 1 0 0 0 1 1 0 0 0 0 0 13 0 1332.6157 Q96QR8 Q96QR8 25 37 PURB Transcriptional activator protein Pur-beta yes yes 2 0.0076113 93.096 By MS/MS 5 0.816 1 1 1 3 8790700 0 0 8790700 4442 1828 4631 18322;18323;18324 15166;15167 15167 2 0 0 1302100 GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR GGGGGFGAAGGFGGRGGGFGGGSGFGGGSG FSGGGFGGGGFGGGRFGGFGGPGGVGGLGG R G G G R F 0 1 0 0 0 0 0 25 0 0 0 0 0 6 0 4 0 0 0 0 0 0 36 0 2830.1869 CON__P35908 CON__P35908 93 128 yes yes 2;3 0 353.78 By MS/MS By MS/MS By MS/MS 3.53 2.15 4 3 2 2 3 1 1 1 4 2 11 269710000 87459000 4975400 177270000 + 4443 65 4632 18325;18326;18327;18328;18329;18330;18331;18332;18333;18334;18335;18336;18337;18338;18339;18340;18341 15168;15169;15170;15171;15172;15173;15174;15175;15176;15177;15178;15179;15180;15181 15178 14 69287000 2357300 32973000 GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR GGGGGFGAAGGFGGRGGGFGGGSSFGGGSG FSGGGFGGGGFGGGRFGGFGGPGGVGGLGG R G G G R F 0 1 0 0 0 0 0 20 0 0 0 0 0 5 0 4 0 0 0 0 0 0 30 0 2398.0111 CON__P35908v2;P35908 CON__P35908v2 93 122 KRT2 Keratin, type II cytoskeletal 2 epidermal yes no 2;3 0 329.74 By MS/MS By MS/MS By MS/MS 5.13 2.75 6 6 5 6 5 6 5 6 4 3 20 13 19 2353000000 912140000 177610000 1263200000 + 4444 66 4633 18342;18343;18344;18345;18346;18347;18348;18349;18350;18351;18352;18353;18354;18355;18356;18357;18358;18359;18360;18361;18362;18363;18364;18365;18366;18367;18368;18369;18370;18371;18372;18373;18374;18375;18376;18377;18378;18379;18380;18381;18382;18383;18384;18385;18386;18387;18388;18389;18390;18391;18392;18393 15182;15183;15184;15185;15186;15187;15188;15189;15190;15191;15192;15193;15194;15195;15196;15197;15198;15199;15200;15201;15202;15203;15204;15205;15206;15207;15208;15209;15210;15211;15212;15213;15214;15215;15216;15217;15218;15219;15220;15221;15222;15223;15224;15225;15226;15227;15228;15229;15230;15231;15232;15233;15234;15235;15236;15237 15219 56 746420000 76168000 236930000 GGGFGGNDNFGR SQRGRSGSGNFGGGRGGGFGGNDNFGRGGN GGRGGGFGGNDNFGRGGNFSGRGGFGGSRG R G G G R G 0 1 2 1 0 0 0 6 0 0 0 0 0 2 0 0 0 0 0 0 0 0 12 0 1153.4901 P09651 P09651 207 218 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 2 0.013531 89.029 By MS/MS By matching 6 0 2 1 1 9001700 0 5680700 3321000 4445 490 4634 18394;18395 15238 15238 1 0 1966500 496860 GGGGFGAGPGPGGLQSGQTIALPAQGLIEFR NQRGRFLRIRQTVNRGGGGFGAGPGPGGLQ GQTIALPAQGLIEFRDALAKLIDDYGGEDD R G G F R D 3 1 0 0 0 3 1 11 0 2 3 0 0 2 3 1 1 0 0 0 0 0 31 0 2866.4726 Q96QR8 Q96QR8 153 183 PURB Transcriptional activator protein Pur-beta yes yes 3 2.323E-09 61.738 By MS/MS By MS/MS 6 0 2 1 1 19323000 0 10292000 9030900 4446 1828 4635 18396;18397 15239;15240 15239 2 0 3562900 1351100 GGGGGGFRGFSSGSAVVSGGSR ______________________________ RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G G S R R 1 2 0 0 0 0 0 10 0 0 0 0 0 2 0 5 0 0 0 2 0 0 22 1 1898.8983 CON__P35908;CON__P35908v2;P35908 CON__P35908 13 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.851E-35 190.37 By MS/MS By matching 5.41 2.99 2 2 2 1 1 2 3 2 2 16 1 270830000 264900000 0 5930300 + 4447 65;66 4636 18398;18399;18400;18401;18402;18403;18404;18405;18406;18407;18408;18409;18410;18411;18412;18413;18414 15241;15242;15243;15244;15245;15246;15247;15248;15249;15250;15251;15252;15253;15254 15247 14 308890000 0 1052300 GGGGGGFRGFSSGSAVVSGGSRR ______________________________ GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG R G G R R S 1 3 0 0 0 0 0 10 0 0 0 0 0 2 0 5 0 0 0 2 0 0 23 2 2054.9994 CON__P35908;CON__P35908v2;P35908 CON__P35908 13 35 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 2.0098E-20 145.77 By MS/MS By matching 6.38 2.67 1 1 2 2 2 2 1 3 2 15 1 379130000 378600000 528050 0 + 4448 65;66 4637 18415;18416;18417;18418;18419;18420;18421;18422;18423;18424;18425;18426;18427;18428;18429;18430 15255;15256;15257;15258;15259;15260;15261;15262;15263;15264;15265 15265 11 418950000 422840 0 GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR SVSTSHTTISGGGSRGGGGGGYGSGGSSYG GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG R G G G R G 0 1 0 0 0 0 0 21 0 0 0 0 0 0 0 6 0 0 3 0 0 0 31 0 2382.9446 P04264;CON__P04264 P04264 519 549 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0 441.27 By MS/MS By MS/MS By MS/MS 5.48 2.9 7 5 6 6 6 6 6 6 6 6 21 20 19 4447200000 3562300000 142040000 742850000 + 4449 413 4638 18431;18432;18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444;18445;18446;18447;18448;18449;18450;18451;18452;18453;18454;18455;18456;18457;18458;18459;18460;18461;18462;18463;18464;18465;18466;18467;18468;18469;18470;18471;18472;18473;18474;18475;18476;18477;18478;18479;18480;18481;18482;18483;18484;18485;18486;18487;18488;18489;18490 15266;15267;15268;15269;15270;15271;15272;15273;15274;15275;15276;15277;15278;15279;15280;15281;15282;15283;15284;15285;15286;15287;15288;15289;15290;15291;15292;15293;15294;15295;15296;15297;15298;15299;15300;15301;15302;15303;15304;15305;15306;15307;15308;15309;15310;15311;15312;15313;15314;15315;15316;15317;15318;15319;15320;15321;15322;15323;15324;15325;15326;15327;15328;15329;15330;15331;15332;15333;15334;15335 15268 70 3709300000 91326000 206660000 GGGGGQDNGLEGLGNDSR KRGERGSERGRDEARGGGGGQDNGLEGLGN GGQDNGLEGLGNDSRDMYMESEGGDGYLAP R G G S R D 0 1 2 2 0 1 1 8 0 0 2 0 0 0 0 1 0 0 0 0 0 0 18 0 1658.7245 P08621 P08621 394 411 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 1.0434E-22 190.78 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 36255000 0 3183300 33072000 4450 474 4639 18491;18492;18493 15336;15337;15338 15338 3 0 1056400 5700200 GGGGNFGPGPGSNFR SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR GGGGNFGPGPGSNFRGGSDGYGSGRGFGDG R G G F R G 0 1 2 0 0 0 0 7 0 0 0 0 0 2 2 1 0 0 0 0 0 0 15 0 1376.6222 P22626 P22626 214 228 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 1.0337E-25 205.13 By MS/MS By MS/MS By MS/MS 4.24 2.29 3 2 2 2 2 2 3 1 3 8 6 2477600000 36207000 1613000000 828390000 4451 632 4640 18494;18495;18496;18497;18498;18499;18500;18501;18502;18503;18504;18505;18506;18507;18508;18509;18510 15339;15340;15341;15342;15343;15344;15345;15346;15347;15348;15349;15350;15351;15352;15353;15354;15355;15356;15357 15348 19 50418000 573360000 133040000 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIR AGGGPPPGPPGAGDRGGGGPGGGGPGGGSA GGPSQPPGGGGPGIRKDAFADAVQRARQIA R G G I R K 1 1 0 0 0 1 0 18 0 1 0 0 0 0 6 2 0 0 0 0 0 0 30 0 2269.0584 Q92945 Q92945 41 70 KHSRP Far upstream element-binding protein 2 yes yes 3 3.214E-33 116.2 By MS/MS By matching 3 0.707 1 2 1 3 1 19219000 0 13677000 5542100 4452 1733 4641 18511;18512;18513;18514 15358;15359;15360 15359 3 0 5704400 1074900 GGGGPGGGGPGGGSAGGPSQPPGGGGPGIRK AGGGPPPGPPGAGDRGGGGPGGGGPGGGSA GPSQPPGGGGPGIRKDAFADAVQRARQIAA R G G R K D 1 1 0 0 0 1 0 18 0 1 0 1 0 0 6 2 0 0 0 0 0 0 31 1 2397.1534 Q92945 Q92945 41 71 KHSRP Far upstream element-binding protein 2 yes yes 3 2.6037E-12 70.647 By MS/MS 3 0.816 1 1 1 3 7517400 0 7517400 0 4453 1733 4642 18515;18516;18517 15361 15361 1 0 3234200 0 GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR SSSGYGGGSSRVCGRGGGGSFGYSYGGGSG FSASSLGGGFGGGSRGFGGASGGGYSSSGG R G G S R G 1 1 0 0 0 0 0 17 0 0 1 0 0 3 0 7 0 0 2 0 0 0 32 0 2704.1538 P35527;CON__P35527 P35527 64 95 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 0 427.85 By MS/MS By MS/MS By MS/MS 4.79 2.55 4 5 5 5 4 4 2 6 3 9 13 16 1026500000 318960000 127590000 579980000 + 4454 750 4643 18518;18519;18520;18521;18522;18523;18524;18525;18526;18527;18528;18529;18530;18531;18532;18533;18534;18535;18536;18537;18538;18539;18540;18541;18542;18543;18544;18545;18546;18547;18548;18549;18550;18551;18552;18553;18554;18555 15362;15363;15364;15365;15366;15367;15368;15369;15370;15371;15372;15373;15374;15375;15376;15377;15378;15379;15380;15381;15382;15383;15384;15385;15386;15387;15388;15389;15390;15391;15392;15393;15394;15395 15364 34 260280000 50906000 110210000 GGGGSGGYYGQGGMSGGGWR SGGYGTPDGLGGYGRGGGGSGGYYGQGGMS GGYYGQGGMSGGGWRGMY____________ R G G W R G 0 1 0 0 0 1 0 12 0 0 0 0 1 0 0 2 0 1 2 0 0 0 20 0 1803.7383 P31942 P31942 324 343 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 3.6991E-57 221.66 By matching By MS/MS By MS/MS 6 0 5 1 2 2 51262000 3031100 20974000 27257000 4455 721 4644;4645 18556;18557;18558;18559;18560 15396;15397;15398;15399 15398 319 4 4035900 7260400 4077900 GGGHVAQIYAIR GKERFAGVDIRVRVKGGGHVAQIYAIRQSI RVKGGGHVAQIYAIRQSISKALVAYYQKYV K G G I R Q 2 1 0 0 0 1 0 3 1 2 0 0 0 0 0 0 0 0 1 1 0 0 12 0 1240.6677 P62249 P62249 74 85 RPS16 40S ribosomal protein S16 yes yes 2;3 2.0261E-12 182.53 By MS/MS By MS/MS 7.24 2.07 1 1 2 2 2 4 2 3 10 7 679070000 0 149450000 529630000 4456 1010 4646 18561;18562;18563;18564;18565;18566;18567;18568;18569;18570;18571;18572;18573;18574;18575;18576;18577 15400;15401;15402;15403;15404;15405 15403 6 0 88862000 128560000 GGGNQVSLLNVVMDLK YKYILTRNFEALNARGGGNQVSLLNVVMDL GGNQVSLLNVVMDLKKCCNHPYLFPVAAME R G G L K K 0 0 2 1 0 1 0 3 0 0 3 1 1 0 0 1 0 0 0 3 0 0 16 0 1642.8712 Q14839 Q14839 1001 1016 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 3.8382E-05 120.03 By matching By MS/MS 1.33 0.471 2 1 1 2 16675000 0 1761600 14913000 4457 1321 4647 18578;18579;18580 15406;15407 15406 1 0 861020 3217700 GGGNQVSLLNVVMDLKK YKYILTRNFEALNARGGGNQVSLLNVVMDL GNQVSLLNVVMDLKKCCNHPYLFPVAAMEA R G G K K C 0 0 2 1 0 1 0 3 0 0 3 2 1 0 0 1 0 0 0 3 0 0 17 1 1770.9662 Q14839 Q14839 1001 1017 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.0012368 72.184 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 21758000 0 7033700 14725000 4458 1321 4648 18581;18582;18583 15408;15409 15409 2 0 3438000 3194000 GGGPAGAGGEAPAALR LCAVSGPRQAEGGERGGGPAGAGGEAPAAL GGPAGAGGEAPAALRGRLLCDFRRAPFAGR R G G L R G 5 1 0 0 0 0 1 6 0 0 1 0 0 0 2 0 0 0 0 0 0 0 16 0 1307.6582 Q5RKV6 Q5RKV6 78 93 EXOSC6 Exosome complex component MTR3 yes yes 2 3.521E-05 124.67 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 23114000 0 5743400 17370000 4459 1443 4649 18584;18585;18586 15410;15411 15410 2 0 1988200 2736100 GGHMDDGGYSMNFNMSSSR GGRGGSGGTRGPPSRGGHMDDGGYSMNFNM DDGGYSMNFNMSSSRGPLPVKRGPPPRSGG R G G S R G 0 1 2 2 0 0 0 4 1 0 0 0 3 1 0 4 0 0 1 0 0 0 19 0 2048.7775 P38159;Q96E39 P38159 126 144 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2;3 0 414.01 By MS/MS By MS/MS By MS/MS 4.25 1.39 1 1 2 3 8 1 1 1 14 187330000 7059900 23677000 156590000 4460 771;1772 4650;4651 18587;18588;18589;18590;18591;18592;18593;18594;18595;18596;18597;18598;18599;18600;18601;18602 15412;15413;15414;15415;15416;15417;15418;15419 15416 380 8 5655900 6103100 23547000 GGHPPAIQSLINLLADNR ILQERERGGPEEGVRGGHPPAIQSLINLLA PPAIQSLINLLADNRYLTAEETDKIINYLR R G G N R Y 2 1 2 1 0 1 0 2 1 2 3 0 0 0 2 1 0 0 0 0 0 0 18 0 1885.017 Q9HCD5 Q9HCD5 336 353 NCOA5 Nuclear receptor coactivator 5 yes yes 3 2.4802E-09 136.34 By MS/MS By MS/MS 4.38 0.992 2 2 3 1 3 5 36596000 0 4797900 31798000 4461 2010 4652 18603;18604;18605;18606;18607;18608;18609;18610 15420;15421;15422;15423;15424 15421 5 0 1480200 5341500 GGIQELIGLIK LIMDEVDGMAGNEDRGGIQELIGLIKHTKI NEDRGGIQELIGLIKHTKIPIICMCNDRNH R G G I K H 0 0 0 0 0 1 1 3 0 3 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1139.6914 P35251 P35251 732 742 RFC1 Replication factor C subunit 1 yes yes 2 0.011527 88.948 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 20438000 0 9548400 10889000 4462 746 4653 18611;18612;18613;18614 15425;15426;15427;15428 15426 4 0 4324700 2418400 GGIVDEGALLR FAQCKKGVRVVNCARGGIVDEGALLRALQS NCARGGIVDEGALLRALQSGQCAGAALDVF R G G L R A 1 1 0 1 0 0 1 3 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1098.6033 O43175 O43175 237 247 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.010282 90.657 By MS/MS 4 0 1 1 21558000 0 21558000 0 4463 190 4654 18615 15429 15429 1 0 7154400 0 GGIVGMTLPIAR AFEGQVGQAAYSASKGGIVGMTLPIARDLA ASKGGIVGMTLPIARDLAPIGIRVMTIAPG K G G A R D 1 1 0 0 0 0 0 3 0 2 1 0 1 0 1 0 1 0 0 1 0 0 12 0 1183.6747 Q99714 Q99714 173 184 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2 0.00012305 138.1 By matching By MS/MS By MS/MS 7 0 3 1 1 1 28261000 1086200 11711000 15464000 4464 1859 4655 18616;18617;18618 15430;15431 15431 2 2341100 6724400 2743900 GGKPEPPAMPQPVPTA PKDEILPTTPISEQKGGKPEPPAMPQPVPT GKPEPPAMPQPVPTA_______________ K G G T A - 2 0 0 0 0 1 1 2 0 0 0 1 1 0 6 0 1 0 0 1 0 0 16 1 1572.797 P23396 P23396 228 243 RPS3 40S ribosomal protein S3 yes yes 2 0.00041346 110.8 By MS/MS By MS/MS 5.83 1.07 1 1 2 2 4 2 374280000 0 171250000 203030000 4465 641 4656 18619;18620;18621;18622;18623;18624 15432;15433;15434;15435;15436;15437;15438 15434 6 0 67133000 30970000 GGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVR ISSSSFSRVGSSNFRGGLGGGYGGASGMGG SPLVLEVDPNIQAVRTQEKEQIKTLNNKFA R G G V R T 3 1 2 1 0 2 1 10 0 2 5 0 1 0 2 3 2 0 1 5 0 0 41 0 3924.0415 CON__P05787;P05787 CON__P05787 48 88 KRT8 Keratin, type II cytoskeletal 8 yes no 3;4 1.2024E-92 150.45 By MS/MS By MS/MS 3 1.11 2 2 3 6 2 11 80204000 0 6226000 73978000 + 4466 49 4657;4658 18625;18626;18627;18628;18629;18630;18631;18632;18633;18634;18635;18636;18637 15439;15440;15441;15442;15443;15444;15445;15446;15447;15448;15449 15443 27 11 0 2066200 13401000 GGLGVGEPGPLGGGGSGGPQMGLPPPPPALRPR KAPPLVENEEAEPGRGGLGVGEPGPLGGGG PQMGLPPPPPALRPRLVFHTQLAHGSPTGR R G G P R L 1 2 0 0 0 1 1 12 0 0 4 0 1 0 9 1 0 0 0 1 0 0 33 1 2985.5607 O14908 O14908 25 57 GIPC1 PDZ domain-containing protein GIPC1 yes yes 3 2.2411E-10 62.57 By MS/MS 6 0 1 1 7037500 0 7037500 0 4467 151 4659 18638 15450 15450 1 0 2436100 0 GGLGYVEETSEFEAR FLRSDLIEVATRLQKGGLGYVEETSEFEAR GGLGYVEETSEFEARVISLEKLKDFGECVI K G G A R V 1 1 0 0 0 0 4 3 0 0 1 0 0 1 0 1 1 0 1 1 0 0 15 0 1642.7475 Q9UIG0 Q9UIG0 1069 1083 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00042143 145.28 By MS/MS 1.5 0.5 1 1 2 22315000 0 0 22315000 4468 2164 4660 18639;18640 15451;15452 15451 2 0 0 4884900 GGLNTPLHESDFSGVTPQR AQNLMALTNVDTPLKGGLNTPLHESDFSGV TPLHESDFSGVTPQRQVVQTPNTVLSTPFR K G G Q R Q 0 1 1 1 0 1 1 3 1 0 2 0 0 1 2 2 2 0 0 1 0 0 19 0 2010.9759 Q99459 Q99459 381 399 CDC5L Cell division cycle 5-like protein yes yes 2;3 6.5638E-09 126.95 By MS/MS 3 1 1 1 2 34892000 0 0 34892000 4469 1843 4661 18641;18642 15453;15454 15454 2 0 0 7254500 GGLVGTPAPFSIDTK PPDPSKVCAYGPGLKGGLVGTPAPFSIDTK GGLVGTPAPFSIDTKGAGTGGLGLTVEGPC K G G T K G 1 0 0 1 0 0 0 3 0 1 1 1 0 1 2 1 2 0 0 1 0 0 15 0 1458.7718 Q14315 Q14315 1074 1088 FLNC Filamin-C yes yes 2 0.0011872 96.64 By MS/MS 1.5 0.5 1 1 2 14769000 0 14769000 0 4470 1298 4662 18643;18644 15455 15455 1 0 7157700 0 GGLVSDAYGEDDFSR GEAGIEAVGSAAEEKGGLVSDAYGEDDFSR GGLVSDAYGEDDFSRLGGDEDGYEEEEDEN K G G S R L 1 1 0 3 0 0 1 3 0 0 1 0 0 1 0 2 0 0 1 1 0 0 15 0 1586.6849 Q9UHR5 Q9UHR5 39 53 SAP30BP SAP30-binding protein yes yes 2 0.00047385 111.5 By MS/MS 5 0 1 1 8025400 0 0 8025400 4471 2155 4663 18645 15456 15456 1 0 0 1119400 GGLWDDDDAPRPSQFEEDLALMEEMEAEHR RRPGPGPGVPPKRARGGLWDDDDAPRPSQF EEDLALMEEMEAEHRLQEQEEEELQSVLEG R G G H R L 3 2 0 5 0 1 6 2 1 0 3 0 2 1 2 1 0 1 0 0 0 0 30 1 3487.4933 P28340 P28340 20 49 POLD1 DNA polymerase delta catalytic subunit yes yes 4 4.0064E-09 60.79 By MS/MS 2 0 1 1 1941400 0 0 1941400 4472 691 4664 18646 15457 15457 1 0 0 438720 GGMGSGGLATGIAGGLAGMGGIQNEK GSGSRISVSRSTSFRGGMGSGGLATGIAGG IAGGLAGMGGIQNEKETMQSLNDRLASYLD R G G E K E 3 0 1 0 0 1 1 11 0 2 2 1 2 0 0 1 1 0 0 0 0 0 26 0 2260.094 P05783 P05783 56 81 KRT18 Keratin, type I cytoskeletal 18 yes yes 2;3 7.2928E-205 299.65 By MS/MS By MS/MS By MS/MS 4.72 1.04 3 3 9 2 1 2 9 7 830280000 13105000 243830000 573340000 4473 436 4665;4666 18647;18648;18649;18650;18651;18652;18653;18654;18655;18656;18657;18658;18659;18660;18661;18662;18663;18664 15458;15459;15460;15461;15462;15463;15464;15465;15466;15467;15468;15469;15470;15471;15472 15471 155;156 15 10499000 64965000 84090000 GGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR GSGSRISVSRSTSFRGGMGSGGLATGIAGG GIQNEKETMQSLNDRLASYLDRVRSLETEN R G G D R L 3 1 2 1 0 2 2 11 0 2 3 1 3 0 0 2 2 0 0 0 0 0 35 1 3334.5704 P05783 P05783 56 90 KRT18 Keratin, type I cytoskeletal 18 yes yes 3;4 5.3976E-91 206.58 By MS/MS By MS/MS 4.86 0.35 1 6 4 3 112710000 0 38463000 74244000 4474 436 4667;4668 18665;18666;18667;18668;18669;18670;18671 15473;15474;15475;15476;15477;15478 15475 154;155;156 6 0 10141000 10356000 GGNFGFGDSR SRQEMQEVQSSRSGRGGNFGFGDSRGGGGN SRSGRGGNFGFGDSRGGGGNFGPGPGSNFR R G G S R G 0 1 1 1 0 0 0 4 0 0 0 0 0 2 0 1 0 0 0 0 0 0 10 0 1012.4363 P22626 P22626 204 213 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 2.9371E-16 176.6 By MS/MS By MS/MS By MS/MS 5.53 2.33 2 2 1 3 5 3 1 1 1 3 9 7 1372100000 150180000 511080000 710870000 4475 632 4669 18672;18673;18674;18675;18676;18677;18678;18679;18680;18681;18682;18683;18684;18685;18686;18687;18688;18689;18690 15479;15480;15481;15482;15483;15484;15485;15486;15487;15488;15489;15490;15491;15492;15493 15490 14 206550000 179130000 106210000 GGNLTLLHFLLGLK HGINFYDASLGTFGRGGNLTLLHFLLGLKT RGGNLTLLHFLLGLKTAADDDLVADLVVNI R G G L K T 0 0 1 0 0 0 0 3 1 0 6 1 0 1 0 0 1 0 0 0 0 0 14 0 1494.8922 O60287 O60287 335 348 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0038067 92.611 By MS/MS 1 0 1 1 1400200 0 0 1400200 4476 224 4670 18691 15494 15494 1 0 0 301700 GGNRFEPYANPTK RPAQNEKRKEKNIKRGGNRFEPYANPTKRY KRGGNRFEPYANPTKRYRAFITNIPFDVKW R G G T K R 1 1 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 13 1 1449.7001 P52272 P52272 57 69 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 0.0021705 134.2 By MS/MS By MS/MS 4.14 1.99 1 1 4 4 1 1 1 1 9 5 221060000 0 86503000 134560000 4477 902 4671 18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705 15495;15496;15497;15498;15499;15500;15501;15502;15503 15501 9 0 36156000 25792000 GGNRFEPYANPTKR RPAQNEKRKEKNIKRGGNRFEPYANPTKRY RGGNRFEPYANPTKRYRAFITNIPFDVKWQ R G G K R Y 1 2 2 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 1 0 0 0 14 2 1605.8012 P52272 P52272 57 70 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 3;4 0.0003713 108.58 By MS/MS 4.5 1.5 1 2 1 4 37439000 0 37439000 0 4478 902 4672 18706;18707;18708;18709 15504;15505;15506;15507 15506 4 0 14673000 0 GGPAEGQLQENDR FQSGETSIVISDVLKGGPAEGQLQENDRVA LKGGPAEGQLQENDRVAMVNGVSMDNVEHA K G G D R V 1 1 1 1 0 2 2 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 13 0 1369.6222 Q07157 Q07157 62 74 TJP1 Tight junction protein ZO-1 yes yes 2 0.00024175 88.681 By MS/MS 1 0 1 1 0 0 0 0 4479 1177 4673 18710 15508 15508 1 0 0 0 GGPEGVAAQAVASAASAGPADAEMEEIFDDASPGK PAASIASGGSNSSNKGGPEGVAAQAVASAA DAEMEEIFDDASPGKQKEIQEPDPTYEEKM K G G G K Q 10 0 0 3 0 1 4 5 0 1 0 1 1 1 3 3 0 0 0 2 0 0 35 0 3272.4779 O60264 O60264 35 69 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 1.2019E-58 132.96 By MS/MS 2 0 1 1 3575000 0 0 3575000 4480 223 4674 18711 15509 15509 1 0 0 807890 GGPGSAVSPYPTFNPSSDVAALHK ENEEQEYVQTVKSSKGGPGSAVSPYPTFNP YPTFNPSSDVAALHKAIMVKGVDEATIIDI K G G H K A 3 0 1 1 0 0 0 3 1 0 1 1 0 1 4 4 1 0 1 2 0 0 24 0 2355.1495 P04083 P04083 30 53 ANXA1 Annexin A1 yes yes 3 4.0308E-26 173.43 By MS/MS By MS/MS By matching 4.8 3.43 2 2 1 2 2 1 49188000 8617100 20487000 20084000 4481 410 4675 18712;18713;18714;18715;18716 15510;15511;15512 15510 3 9428800 7259300 3004700 GGPISFSSSR GLSREVSTLKNRLRRGGPISFSSSRSGRRQ NRLRRGGPISFSSSRSGRRQLHLEGASLEL R G G S R S 0 1 0 0 0 0 0 2 0 1 0 0 0 1 1 4 0 0 0 0 0 0 10 0 993.48796 P35580 P35580 1931 1940 MYH10 Myosin-10 yes yes 2 0.024923 80.219 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 39709000 0 26616000 13093000 4482 753 4676 18717;18718;18719 15513;15514 15514 2 0 12945000 2821200 GGPLQALTR QAGITETEWTSGSSKGGPLQALTRESTRGS TSGSSKGGPLQALTRESTRGSRRTPRKRVE K G G T R E 1 1 0 0 0 1 0 2 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 0 911.51886 P42167 P42167 240 248 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2 0.0015068 107.9 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 1 4 76289000 0 16818000 59471000 4483 799 4677 18720;18721;18722;18723;18724 15515;15516;15517 15517 3 0 5581200 9818400 GGPNIITLADIVK KKKIKREIKILENLRGGPNIITLADIVKDP LRGGPNIITLADIVKDPVSRTPALVFEHVN R G G V K D 1 0 1 1 0 0 0 2 0 3 1 1 0 0 1 0 1 0 0 1 0 0 13 0 1309.7606 P68400;Q8NEV1 P68400 90 102 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.0058562 98.04 By MS/MS By MS/MS 5 0 2 1 1 18977000 0 5603300 13373000 4484 1080 4678 18725;18726 15518;15519 15519 2 0 1444400 1865400 GGPNIITLADIVKDPVSR KKKIKREIKILENLRGGPNIITLADIVKDP NIITLADIVKDPVSRTPALVFEHVNNTDFK R G G S R T 1 1 1 2 0 0 0 2 0 3 1 1 0 0 2 1 1 0 0 2 0 0 18 1 1864.0418 P68400;Q8NEV1 P68400 90 107 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2;3 1.5692E-29 198.74 By MS/MS By MS/MS 5.4 0.49 3 2 2 3 37510000 0 6765500 30745000 4485 1080 4679 18727;18728;18729;18730;18731 15520;15521;15522 15522 3 0 1852900 4307900 GGPPFAFVEFEDPR YKYGAIRDIDLKNRRGGPPFAFVEFEDPRD RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD R G G P R D 1 1 0 1 0 0 2 2 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1563.7358 Q07955 Q07955 52 65 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 0.0010788 109.42 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 73501000 0 7217000 66284000 4486 1179 4680 18732;18733;18734 15523;15524;15525;15526;15527;15528 15527 6 0 2498300 9886700 GGPPFAFVEFEDPRDAEDAVYGR YKYGAIRDIDLKNRRGGPPFAFVEFEDPRD EFEDPRDAEDAVYGRDGYDYDGYRLRVEFP R G G G R D 3 2 0 3 0 0 3 3 0 0 0 0 0 3 3 0 0 0 1 2 0 0 23 1 2540.1608 Q07955 Q07955 52 74 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2;3 3.5313E-18 124.3 By MS/MS By MS/MS 6 0 3 1 2 71190000 0 22557000 48633000 4487 1179 4681 18735;18736;18737 15529;15530;15531;15532;15533 15533 5 0 7808500 7276000 GGPTPQEAIQR VFGKLFGAGGGKAGKGGPTPQEAIQRLRDT KAGKGGPTPQEAIQRLRDTEEMLSKKQEFL K G G Q R L 1 1 0 0 0 2 1 2 0 1 0 0 0 0 2 0 1 0 0 0 0 0 11 0 1152.5887 Q9H444 Q9H444 18 28 CHMP4B Charged multivesicular body protein 4b yes yes 2 1.8161E-07 161.02 By matching By MS/MS By MS/MS 6 0 3 1 1 1 33264000 2904700 17439000 12920000 4488 1981 4682 18738;18739;18740 15534;15535 15535 2 3867700 6036700 1933000 GGPTVDPEELFR GFDPGASGSQHSYWKGGPTVDPEELFRKIF YWKGGPTVDPEELFRKIFGEFSSSSFGDFQ K G G F R K 0 1 0 1 0 0 2 2 0 0 1 0 0 1 2 0 1 0 0 1 0 0 12 0 1315.6408 Q96EY1 Q96EY1 176 187 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2 6.4017E-05 143.37 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 47908000 0 5371500 42536000 4489 1778 4683 18741;18742;18743 15536;15537 15537 2 0 1384600 6026000 GGQLLVSLK VSAGGRYVKVWDMLKGGQLLVSLKNHHKTV VWDMLKGGQLLVSLKNHHKTVTCLCLSSSG K G G L K N 0 0 0 0 0 1 0 2 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 913.55967 Q8TED0 Q8TED0 237 245 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.023989 79.596 By MS/MS 4 0 1 1 7914700 0 7914700 0 4490 1665 4684 18744 15538 15538 1 0 2626600 0 GGQLQEQLTQQLSQALSSAVAGR EQRRLERALAEGQQRGGQLQEQLTQQLSQA TQQLSQALSSAVAGRLERSIRDEIKKTVPP R G G G R L 3 1 0 0 0 6 1 3 0 0 4 0 0 0 0 3 1 0 0 1 0 0 23 0 2369.2299 Q6P2E9 Q6P2E9 1016 1038 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 8.1517E-15 114.63 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 10215000 0 2626800 7588400 4491 1489 4685 18745;18746;18747;18748 15539;15540;15541 15541 3 0 1182900 1482500 GGSDDSSKDPIDVNYEK LDNLLDIEVAYSLLRGGSDDSSKDPIDVNY SDDSSKDPIDVNYEKLKTDIKVVDRDSEEA R G G E K L 0 0 1 4 0 0 1 2 0 1 0 2 0 0 1 3 0 0 1 1 0 0 17 1 1824.8014 P09874 P09874 780 796 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 5.8537E-110 268.21 By MS/MS By MS/MS 2.54 1.22 3 4 3 2 1 4 9 392790000 0 106320000 286470000 4492 492 4686 18749;18750;18751;18752;18753;18754;18755;18756;18757;18758;18759;18760;18761 15542;15543;15544;15545;15546;15547;15548;15549;15550;15551 15546 10 0 48180000 61919000 GGSFQLNELQGLK RQPRTHYYAVAVVKKGGSFQLNELQGLKSC KKGGSFQLNELQGLKSCHTGLRRTAGWNVP K G G L K S 0 0 1 0 0 2 1 3 0 0 3 1 0 1 0 1 0 0 0 0 0 0 13 0 1389.7252 P02788 P02788 120 132 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 8.6153E-37 167.93 By MS/MS By matching 6.27 3.02 1 1 1 1 1 1 2 1 2 9 2 206020000 200720000 0 5294400 4493 400 4687 18762;18763;18764;18765;18766;18767;18768;18769;18770;18771;18772 15552;15553;15554;15555;15556;15557;15558 15557 6 227350000 0 3538000 GGSGGGGGGSSGGRGSGGGSSGGSIGGR GHGSYGSGSSSGGYRGGSGGGGGGSSGGRG RGSGGGSSGGSIGGRGSSSGGVKSSGGSSS R G G G R G 0 2 0 0 0 0 0 18 0 1 0 0 0 0 0 7 0 0 0 0 0 0 28 1 2078.9074 P04264;CON__P04264 P04264 589 616 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.020269 27.638 By MS/MS 6 2.74 1 1 1 1 1 1 1 1 8 2660800 0 2660800 0 + 4494 413 4688 18773;18774;18775;18776;18777;18778;18779;18780 15559;15560;15561;15562;15563 15563 5 0 2331200 0 GGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVK GHGSYGSGSSSGGYRGGSGGGGGGSSGGRG GGSIGGRGSSSGGVKSSGGSSSVKFVSTTY R G G V K S 0 2 0 0 0 0 0 21 0 1 0 1 0 0 0 10 0 0 0 1 0 0 36 2 2738.2312 P04264;CON__P04264 P04264 589 624 KRT1 Keratin, type II cytoskeletal 1 yes no 4 0.0086077 25.457 By MS/MS 5 0 1 1 1206200 0 1206200 0 + 4495 413 4689 18781 15564;15565 15565 2 0 310920 0 GGSGGGGSISGGGYGSGGGSGGR GSSSYGSGGRQSGSRGGSGGGGSISGGGYG ISGGGYGSGGGSGGRYGSGGGSKGGSISGG R G G G R Y 0 1 0 0 0 0 0 15 0 1 0 0 0 0 0 5 0 0 1 0 0 0 23 0 1740.7412 CON__P35908;CON__P35908v2;P35908 CON__P35908 556 578 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 0 332.35 By MS/MS By MS/MS By MS/MS 5.37 2.66 8 6 9 14 20 7 6 7 8 9 72 9 13 1756800000 1554300000 30129000 172370000 + 4496 65;66 4690 18782;18783;18784;18785;18786;18787;18788;18789;18790;18791;18792;18793;18794;18795;18796;18797;18798;18799;18800;18801;18802;18803;18804;18805;18806;18807;18808;18809;18810;18811;18812;18813;18814;18815;18816;18817;18818;18819;18820;18821;18822;18823;18824;18825;18826;18827;18828;18829;18830;18831;18832;18833;18834;18835;18836;18837;18838;18839;18840;18841;18842;18843;18844;18845;18846;18847;18848;18849;18850;18851;18852;18853;18854;18855;18856;18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870;18871;18872;18873;18874;18875 15566;15567;15568;15569;15570;15571;15572;15573;15574;15575;15576;15577;15578;15579;15580;15581;15582;15583;15584;15585;15586;15587;15588;15589;15590;15591;15592;15593;15594;15595;15596;15597;15598;15599;15600;15601;15602;15603;15604;15605;15606;15607;15608;15609;15610;15611;15612;15613;15614;15615;15616;15617;15618;15619;15620;15621;15622;15623;15624;15625;15626;15627;15628;15629;15630;15631;15632;15633;15634;15635;15636;15637;15638;15639;15640;15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655;15656;15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670;15671;15672;15673;15674;15675;15676;15677;15678;15679;15680;15681;15682;15683;15684;15685;15686;15687;15688;15689;15690;15691;15692;15693;15694;15695;15696;15697;15698;15699;15700;15701;15702;15703;15704;15705;15706;15707;15708;15709;15710;15711;15712;15713;15714;15715;15716;15717;15718;15719;15720;15721;15722;15723;15724;15725;15726;15727;15728;15729;15730;15731;15732;15733;15734;15735;15736;15737;15738;15739;15740;15741;15742;15743;15744;15745;15746;15747;15748;15749;15750;15751;15752;15753;15754;15755;15756;15757;15758;15759;15760;15761;15762;15763;15764;15765;15766;15767;15768;15769;15770;15771;15772;15773;15774;15775;15776;15777;15778;15779;15780;15781;15782;15783;15784;15785;15786;15787;15788;15789;15790;15791;15792;15793 15665 226 1713600000 25869000 63969000 GGSGGGGSISGGGYGSGGGSGGRYGSGGGSK GSSSYGSGGRQSGSRGGSGGGGSISGGGYG GGGSGGRYGSGGGSKGGSISGGGYGSGGGK R G G S K G 0 1 0 0 0 0 0 19 0 1 0 1 0 0 0 7 0 0 2 0 0 0 31 1 2434.0494 CON__P35908;CON__P35908v2;P35908 CON__P35908 556 586 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 7.9133E-20 97.639 By MS/MS 6.8 2.79 1 1 1 1 1 5 10327000 10327000 0 0 + 4497 65;66 4691 18876;18877;18878;18879;18880 15794;15795;15796;15797 15797 4 14837000 0 0 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK GGGSGGGYGGGSGSRGGSGGSHGGGSGFGG EASGSGGGYGGGSGKSSHS___________ R G G G K S 1 0 0 0 0 0 3 23 1 0 0 1 0 1 0 8 0 0 2 0 0 0 40 0 3222.2743 P35527;CON__P35527 P35527 580 619 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 1.3875E-215 280.49 By MS/MS By MS/MS By MS/MS 5.71 2.88 4 3 4 5 4 3 3 6 5 4 22 7 12 1472400000 1244500000 34206000 193780000 + 4498 750 4692 18881;18882;18883;18884;18885;18886;18887;18888;18889;18890;18891;18892;18893;18894;18895;18896;18897;18898;18899;18900;18901;18902;18903;18904;18905;18906;18907;18908;18909;18910;18911;18912;18913;18914;18915;18916;18917;18918;18919;18920;18921 15798;15799;15800;15801;15802;15803;15804;15805;15806;15807;15808;15809;15810;15811;15812;15813;15814;15815;15816;15817;15818;15819;15820;15821;15822;15823;15824;15825;15826;15827;15828;15829;15830;15831;15832;15833;15834;15835;15836;15837;15838;15839;15840;15841;15842;15843;15844;15845;15846;15847;15848;15849;15850;15851;15852;15853;15854;15855;15856;15857;15858;15859;15860;15861;15862 15799 64 1165000000 27594000 77753000 GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSSHS GGGSGGGYGGGSGSRGGSGGSHGGGSGFGG SGGGYGGGSGKSSHS_______________ R G G H S - 1 0 0 0 0 0 3 23 2 0 0 1 0 1 0 11 0 0 2 0 0 0 44 1 3620.4293 P35527;CON__P35527 P35527 580 623 KRT9 Keratin, type I cytoskeletal 9 yes no 4 4.6222E-33 89.164 By MS/MS 7 0 1 1 16481000 16481000 0 0 + 4499 750 4693 18922 15863 15863 1 35521000 0 0 GGSGGSYGGGGSGGGYGGGSGSR GGRGGSGGSYGRGSRGGSGGSYGGGGSGGG GGGSGGGYGGGSGSRGGSGGSYGGGSGSGG R G G S R G 0 1 0 0 0 0 0 15 0 0 0 0 0 0 0 5 0 0 2 0 0 0 23 0 1790.7204 P35527;CON__P35527 P35527 491 513 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 0 346.89 By MS/MS By MS/MS By MS/MS 5.58 2.85 8 6 9 8 8 7 8 7 12 6 57 10 12 792890000 654480000 33933000 104480000 + 4500 750 4694 18923;18924;18925;18926;18927;18928;18929;18930;18931;18932;18933;18934;18935;18936;18937;18938;18939;18940;18941;18942;18943;18944;18945;18946;18947;18948;18949;18950;18951;18952;18953;18954;18955;18956;18957;18958;18959;18960;18961;18962;18963;18964;18965;18966;18967;18968;18969;18970;18971;18972;18973;18974;18975;18976;18977;18978;18979;18980;18981;18982;18983;18984;18985;18986;18987;18988;18989;18990;18991;18992;18993;18994;18995;18996;18997;18998;18999;19000;19001 15864;15865;15866;15867;15868;15869;15870;15871;15872;15873;15874;15875;15876;15877;15878;15879;15880;15881;15882;15883;15884;15885;15886;15887;15888;15889;15890;15891;15892;15893;15894;15895;15896;15897;15898;15899;15900;15901;15902;15903;15904;15905;15906;15907;15908;15909;15910;15911;15912;15913;15914;15915;15916;15917;15918;15919;15920;15921;15922;15923;15924;15925;15926;15927;15928;15929;15930;15931;15932;15933;15934;15935;15936;15937;15938;15939;15940;15941;15942;15943;15944;15945;15946;15947;15948;15949;15950;15951;15952;15953;15954;15955;15956;15957;15958;15959;15960;15961;15962;15963;15964;15965;15966;15967;15968;15969;15970;15971;15972;15973;15974;15975;15976;15977;15978;15979;15980;15981;15982;15983;15984;15985;15986;15987;15988;15989;15990;15991;15992;15993;15994;15995;15996;15997;15998;15999;16000;16001;16002;16003;16004;16005;16006;16007;16008;16009;16010;16011;16012;16013;16014;16015;16016;16017;16018;16019;16020;16021;16022;16023;16024;16025;16026;16027;16028;16029;16030;16031;16032;16033;16034;16035;16036;16037;16038;16039;16040;16041;16042;16043;16044;16045;16046;16047;16048;16049;16050 15934 187 715380000 21141000 32360000 GGSGSHNWGTVKDELTESPK SSFSHYSGLKHEDKRGGSGSHNWGTVKDEL HNWGTVKDELTESPKYIQKQISYNYSDLDQ R G G P K Y 0 0 1 1 0 0 2 4 1 0 1 2 0 0 1 3 2 1 0 1 0 0 20 1 2084.9763 Q8NC51 Q8NC51 217 236 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 2.109E-103 259.96 By MS/MS 4 0 2 2 45112000 0 0 45112000 4501 1630 4695 19002;19003 16051;16052 16051 2 0 0 7368200 GGSISGGGYGSGGGK GGGSGGRYGSGGGSKGGSISGGGYGSGGGK GGSISGGGYGSGGGKHSSGGGSRGGSSSGG K G G G K H 0 0 0 0 0 0 0 9 0 1 0 1 0 0 0 3 0 0 1 0 0 0 15 0 1196.5422 CON__P35908;CON__P35908v2;P35908 CON__P35908 587 601 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 2.4945E-22 131.12 By MS/MS By MS/MS By MS/MS 5.6 2.93 3 2 1 4 2 3 3 2 1 4 14 2 9 129310000 91562000 4665800 33079000 + 4502 65;66 4696 19004;19005;19006;19007;19008;19009;19010;19011;19012;19013;19014;19015;19016;19017;19018;19019;19020;19021;19022;19023;19024;19025;19026;19027;19028 16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063;16064;16065;16066;16067;16068;16069;16070;16071;16072;16073;16074;16075;16076;16077;16078;16079;16080 16068 28 103630000 1950600 18090000 GGSPFAIVITQQHQIHR NTEVSLSQALEDVSRGGSPFAIVITQQHQI SPFAIVITQQHQIHRSCTVNIMFGTPQEHR R G G H R S 1 1 0 0 0 3 0 2 2 3 0 0 0 1 1 1 1 0 0 1 0 0 17 0 1888.0068 Q9HCD5 Q9HCD5 248 264 NCOA5 Nuclear receptor coactivator 5 yes yes 3 0.004781 58.98 By MS/MS 5 0 1 1 3778200 0 3778200 0 4503 2010 4697 19029 16081 16081 1 0 973910 0 GGVADALLYR QKLFQEDDEIPLYLKGGVADALLYRATMIL PLYLKGGVADALLYRATMILTVGGTAYAIY K G G Y R A 2 1 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 1 1 0 0 10 0 1033.5556 P14406 P14406 47 56 COX7A2 Cytochrome c oxidase subunit 7A2, mitochondrial yes yes 2 0.0045076 98.997 By MS/MS By MS/MS 10 0 2 1 1 28397000 0 3720000 24677000 4504 558 4698 19030;19031 16082;16083 16082 2 0 18820000 53971000 GGVEEGPTVLR TIGIIGAPFSKGQPRGGVEEGPTVLRKAGL GQPRGGVEEGPTVLRKAGLLEKLKEQECDV R G G L R K 0 1 0 0 0 0 2 3 0 0 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1112.5826 P05089 P05089 22 32 ARG1 Arginase-1 yes yes 2 0.0081328 94.85 By MS/MS By matching 6.5 0.5 1 1 1 1 9730500 5039500 0 4691000 4505 422 4699 19032;19033 16084 16084 1 6710100 0 832390 GGVQVLLQQWIEYIK IQDLSLLYQLFSRVRGGVQVLLQQWIEYIK GGVQVLLQQWIEYIKAFGSTIVINPEKDKT R G G I K A 0 0 0 0 0 3 1 2 0 2 2 1 0 0 0 0 0 1 1 2 0 0 15 0 1772.9825 Q13620 Q13620 485 499 CUL4B Cullin-4B yes yes 2 0.00040358 115.29 By MS/MS 2 0 1 1 1112300 0 0 1112300 4506 1264 4700 19034 16085 16085 1 0 0 251350 GGVVNAAKEEHETDEKR AFEGSDGNKVKTFVRGGVVNAAKEEHETDE VVNAAKEEHETDEKRGKIYKPSSRFADQKN R G G K R G 2 1 1 1 0 0 4 2 1 0 0 2 0 0 0 0 1 0 0 2 0 0 17 2 1867.9024 O15042 O15042 138 154 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 4 0.012755 53.278 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 4351900 0 2889000 1462900 4507 163 4701 19035;19036;19037 16086;16087;16088 16086 3 0 1301000 321900 GGYTLVSGYPK LYLVQGTQVYVFLTKGGYTLVSGYPKRLEK FLTKGGYTLVSGYPKRLEKEVGTPHGIILD K G G P K R 0 0 0 0 0 0 0 3 0 0 1 1 0 0 1 1 1 0 2 1 0 0 11 0 1140.5815 P02790 P02790 333 343 HPX Hemopexin yes yes 2 0.011757 88.819 By MS/MS 9.5 0.5 1 1 2 23710000 23710000 0 0 4508 401 4702 19038;19039 16089 16089 1 16357000 0 0 GHADSVTGLSLSSEGSYLLSNAMDNTVR KVWDLRQNKLTYTMRGHADSVTGLSLSSEG EGSYLLSNAMDNTVRVWDVRPFAPKERCVK R G H V R V 2 1 2 2 0 0 1 3 1 0 4 0 1 0 0 6 2 0 1 2 0 0 28 0 2880.356 Q96DI7 Q96DI7 233 260 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 3 3.495E-15 95.523 By MS/MS 5.5 0.5 1 1 2 24610000 0 24610000 0 4509 1767 4703 19040;19041 16090;16091 16091 1 0 8050100 0 GHAGSVDSIAVDGSGTK WNVERNKVKALHCCRGHAGSVDSIAVDGSG AGSVDSIAVDGSGTKFCSGSWDKMLKIWST R G H T K F 2 0 0 2 0 0 0 4 1 1 0 1 0 0 0 3 1 0 0 2 0 0 17 0 1556.7431 Q9GZL7 Q9GZL7 187 203 WDR12 Ribosome biogenesis protein WDR12 yes yes 2;3 5.1318E-48 222.73 By MS/MS By MS/MS 4.86 0.639 2 4 1 2 5 86036000 0 13514000 72523000 4510 1949 4704 19042;19043;19044;19045;19046;19047;19048 16092;16093;16094;16095;16096 16096 5 0 3483500 10671000 GHALLILRPEELGFLR YIHRVGRTARGLNGRGHALLILRPEELGFL HALLILRPEELGFLRYLKQSKVPLSEFDFS R G H L R Y 1 2 0 0 0 0 2 2 1 1 5 0 0 1 1 0 0 0 0 0 0 0 16 1 1833.0625 Q9NVP1 Q9NVP1 524 539 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3;4 8.5572E-06 120.71 By MS/MS By MS/MS 2.78 0.916 1 2 4 2 1 8 83963000 0 5059100 78904000 4511 2069 4705 19049;19050;19051;19052;19053;19054;19055;19056;19057 16097;16098;16099;16100;16101;16102;16103 16100 7 0 2156700 15481000 GHAVGDIPGVR IEENDEVLVAGFGRKGHAVGDIPGVRFKVV FGRKGHAVGDIPGVRFKVVKVANVSLLALY K G H V R F 1 1 0 1 0 0 0 3 1 1 0 0 0 0 1 0 0 0 0 2 0 0 11 0 1076.5727 P62266 P62266 109 119 RPS23 40S ribosomal protein S23 yes yes 2 0.0054973 100.02 By matching By MS/MS 8.2 1.17 2 1 1 1 1 4 27507000 0 2657000 24850000 4512 1013 4706 19058;19059;19060;19061;19062 16104;16105;16106 16105 3 0 1525700 10294000 GHDEREHPFLVK TVMASLRRPKRIIIRGHDEREHPFLVKGGE IIRGHDEREHPFLVKGGEDLRQDQRVEQLF R G H V K G 0 1 0 1 0 0 2 1 2 0 1 1 0 1 1 0 0 0 0 1 0 0 12 1 1462.7317 P78527 P78527 3742 3753 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.057124 47.429 By MS/MS 1 0 1 1 8029400 0 0 8029400 4513 1089 4707 19063 16107 16107 1 0 0 1730100 GHEEFPLDGR RDEPPRAPWNHGEERGHEEFPLDGRNAPME HGEERGHEEFPLDGRNAPMERERLDDWDRE R G H G R N 0 1 0 1 0 0 2 2 1 0 1 0 0 1 1 0 0 0 0 0 0 0 10 0 1155.5309 P49750 P49750 1200 1209 YLPM1 YLP motif-containing protein 1 yes yes 2 0.024507 80.455 By MS/MS 1 0 1 1 12092000 0 0 12092000 4514 865 4708 19064 16108 16108 1 0 0 2605500 GHFGPINSVAFHPDGK RFFHLAFEEEFGRVKGHFGPINSVAFHPDG HFGPINSVAFHPDGKSYSSGGEDGYVRIHY K G H G K S 1 0 1 1 0 0 0 3 2 1 0 1 0 2 2 1 0 0 0 1 0 0 16 0 1678.8216 Q13347 Q13347 283 298 EIF3I Eukaryotic translation initiation factor 3 subunit I yes yes 2;3 4.7772E-05 145.81 By matching By MS/MS By MS/MS 6 0 4 1 1 2 35817000 3234400 9500900 23082000 4515 1240 4709 19065;19066;19067;19068 16109;16110;16111 16111 3 4306600 3288900 3453300 GHFSISIPVK RTGTHGLLVKQEDMKGHFSISIPVKSDIAP QEDMKGHFSISIPVKSDIAPVARLLIYAVL K G H V K S 0 0 0 0 0 0 0 1 1 2 0 1 0 1 1 2 0 0 0 1 0 0 10 0 1083.6077 P01023 P01023 522 531 A2M Alpha-2-macroglobulin yes yes 2 0.00037112 125.31 By MS/MS 9.5 0.5 1 1 2 14780000 14780000 0 0 4516 370 4710 19069;19070 16112 16112 1 11725000 0 0 GHFYMHAGSLLLK LGGNDELSATFLEMKGHFYMHAGSLLLKMG MKGHFYMHAGSLLLKMGQHSSNVQWRALSE K G H L K M 1 0 0 0 0 0 0 2 2 0 3 1 1 1 0 1 0 0 1 0 0 0 13 0 1472.7598 A6NKT7;Q7Z3J3;P0DJD0;P0DJD1;P49792 P49792 287 299 RGPD3;RGPD4;RGPD1;RGPD2;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;E3 SUMO-protein ligase RanBP2 no no 2 0.00137 110.47 By matching By MS/MS 1 0 2 1 1 11915000 3191100 0 8724100 4517 871;17 4711 19071;19072 16113 16113 1 3191100 0 1879800 GHILELLTEVTR SCFIQTLVDVFTKRKGHILELLTEVTRRMA KRKGHILELLTEVTRRMAEAELVQEGKARK K G H T R R 0 1 0 0 0 0 2 1 1 1 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1379.7773 P31944 P31944 200 211 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 1.5813E-05 146.11 By MS/MS 6 2.05 1 2 2 1 1 1 2 10 101700000 101700000 0 0 4518 723 4712 19073;19074;19075;19076;19077;19078;19079;19080;19081;19082 16114;16115;16116;16117;16118;16119 16119 6 64836000 0 0 GHLAFLSGQ YKCGEKGHYANRCTKGHLAFLSGQ______ ANRCTKGHLAFLSGQ_______________ K G H G Q - 1 0 0 0 0 1 0 2 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 928.47667 O95639 O95639 261 269 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes yes 2 0.014143 86.086 By MS/MS By MS/MS 4.8 2.04 1 1 1 2 1 4 88029000 61012000 27017000 0 4519 333 4713 19083;19084;19085;19086;19087 16120;16121 16121 2 131490000 12104000 0 GHLDAELDAYMAQTDPETND EQLDNQLDAYMSKTKGHLDAELDAYMAQTD ELDAYMAQTDPETND_______________ K G H N D - 3 0 1 4 0 1 2 1 1 0 2 0 1 0 1 0 2 0 1 0 0 0 20 0 2204.9168 Q9Y3Y2 Q9Y3Y2 229 248 CHTOP Chromatin target of PRMT1 protein yes yes 2 3.2731E-13 144.28 By MS/MS 6 0 1 1 6361400 0 0 6361400 4520 2280 4714 19088 16122 16122 1 0 0 951740 GHLENNPALEK VVLMGKNTMMRKAIRGHLENNPALEKLLPH KAIRGHLENNPALEKLLPHIRGNVGFVFTK R G H E K L 1 0 2 0 0 0 2 1 1 0 2 1 0 0 1 0 0 0 0 0 0 0 11 0 1220.6149 P05388;Q8NHW5 P05388 67 77 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2;3 2.9024E-47 226.29 By MS/MS By MS/MS By MS/MS 6 0.756 4 6 4 3 6 5 430430000 6561200 220390000 203480000 4521 432 4715 19089;19090;19091;19092;19093;19094;19095;19096;19097;19098;19099;19100;19101;19102 16123;16124;16125;16126;16127;16128;16129;16130;16131;16132;16133 16127 11 8592100 76231000 30577000 GHLSRPEAQSLSPYTTSANR QLEGATRGTTEPHSRGHLSRPEAQSLSPYT PEAQSLSPYTTSANRAKLLAKNRQTFLLQT R G H N R A 2 2 1 0 0 1 1 1 1 0 2 0 0 0 2 4 2 0 1 0 0 0 20 1 2171.0719 O94776 O94776 424 443 MTA2 Metastasis-associated protein MTA2 yes yes 4 1.6148E-05 79.565 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 33524000 0 13226000 20298000 4522 298 4716 19103;19104;19105 16134;16135 16134 2 0 5172900 3936900 GHNGWVTQIATTPQFPDMILSASR ______________________________ ATTPQFPDMILSASRDKTIIMWKLTRDETN K G H S R D 2 1 1 1 0 2 0 2 1 2 1 0 1 1 2 2 3 1 0 1 0 0 24 0 2626.2962 P63244 P63244 13 36 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 3 4.0802E-30 180.45 By MS/MS By MS/MS 5.67 0.943 1 1 3 1 3 3 57916000 0 9184400 48732000 4523 1068 4717;4718 19106;19107;19108;19109;19110;19111 16136;16137;16138 16137 514 3 0 2974700 7328700 GHNTNVGAIVFHPK KLWSVPDCNLLHTLRGHNTNVGAIVFHPKS RGHNTNVGAIVFHPKSTVSLDPKDVNLASC R G H P K S 1 0 2 0 0 0 0 2 2 1 0 1 0 1 1 0 1 0 0 2 0 0 14 0 1489.779 O43172 O43172 271 284 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 0.00010969 117.7 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 57408000 0 41245000 16163000 4524 189 4719 19112;19113;19114 16139;16140 16139 2 0 13560000 2640000 GHPIPHGGMQGGFGGQSR GMSGRGSFAPGGASRGHPIPHGGMQGGFGG IPHGGMQGGFGGQSRGSRPSDARFTRRY__ R G H S R G 0 1 0 0 0 2 0 7 2 1 0 0 1 1 2 1 0 0 0 0 0 0 18 0 1775.8274 Q15424 Q15424 885 902 SAFB Scaffold attachment factor B1 yes yes 3 4.2688E-06 103.67 By MS/MS 1.5 0.5 1 1 2 9045500 0 0 9045500 4525 1364 4720 19115;19116 16141 16141 1 0 0 2013500 GHQLLEEVTQGDMSAADTFLSDLPR ADEGETGMFSLSTIRGHQLLEEVTQGDMSA GDMSAADTFLSDLPRDDIYVSDVEDDGDDT R G H P R D 2 1 0 3 0 2 2 2 1 0 4 0 1 1 1 2 2 0 0 1 0 0 25 0 2729.2967 Q8IY81 Q8IY81 428 452 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 4.4514E-20 117.43 By MS/MS 4 0 1 1 6124500 0 0 6124500 4526 1590 4721 19117 16142 16142 1 0 0 1000300 GHQQLYWSHPR ______________________________ ______________________________ M G H P R K 0 1 0 0 0 2 0 1 2 0 1 0 0 0 1 1 0 1 1 0 0 0 11 0 1407.6796 P62273 P62273 2 12 RPS29 40S ribosomal protein S29 yes yes 2;3 1.2029E-74 248.81 By MS/MS By MS/MS 9.6 0.49 2 3 3 2 79060000 0 69952000 9108000 4527 1015 4722 19118;19119;19120;19121;19122 16143;16144;16145;16146;16147 16147 5 0 349840000 19920000 GHSAAVHSFAFSNDSR KKGEFQEVVRAFELKGHSAAVHSFAFSNDS HSAAVHSFAFSNDSRRMASVSKDGTWKLWD K G H S R R 3 1 1 1 0 0 0 1 2 0 0 0 0 2 0 4 0 0 0 1 0 0 16 0 1688.7655 Q9Y4P3 Q9Y4P3 277 292 TBL2 Transducin beta-like protein 2 yes yes 3 6.7121E-05 98.676 By MS/MS 5 0 1 1 8523900 0 0 8523900 4528 2288 4723 19123 16148 16148 1 0 0 1188900 GHSVLPLEEAVEGFK QMPICVVCDRSREHRGHSVLPLEEAVEGFK GHSVLPLEEAVEGFKEQIQNQLDHLKRVKD R G H F K E 1 0 0 0 0 0 3 2 1 0 2 1 0 1 1 1 0 0 0 2 0 0 15 0 1610.8304 P14373 P14373 126 140 TRIM27 Zinc finger protein RFP yes yes 3 0.027742 47.545 By MS/MS 4 0 1 1 4125900 0 0 4125900 4529 557 4724 19124 16149 16149 1 0 0 673890 GHVDILAPTVQELAALEK VTYGQKRAAGGGSYKGHVDILAPTVQELAA DILAPTVQELAALEKEAQTSFLHLGYLPNQ K G H E K E 3 0 0 1 0 1 2 1 1 1 3 1 0 0 1 0 1 0 0 2 0 0 18 0 1903.0415 Q92499 Q92499 703 720 DDX1 ATP-dependent RNA helicase DDX1 yes yes 3 4.577E-09 118.31 By MS/MS By matching 2.67 0.471 1 2 2 1 60426000 0 21507000 38919000 4530 1705 4725 19125;19126;19127 16150;16151 16151 2 0 9403400 7548400 GHVFEESQVAGTPMFVVK EQVVGGIYGVLNRKRGHVFEESQVAGTPMF FEESQVAGTPMFVVKAYLPVNESFGFTADL R G H V K A 1 0 0 0 0 1 2 2 1 0 0 1 1 2 1 1 1 0 0 4 0 0 18 0 1960.9717 P13639 P13639 768 785 EEF2 Elongation factor 2 yes yes 3 8.9613E-07 109.14 By MS/MS By MS/MS 5.25 1.92 1 2 1 2 2 25110000 0 19510000 5600400 4531 547 4726 19128;19129;19130;19131 16152;16153 16152 2 0 8661300 905690 GHVSELEADLAEQQHLR ENMKTESQRVVLQLKGHVSELEADLAEQQH VSELEADLAEQQHLRQQAADDCEFLRAELD K G H L R Q 2 1 0 1 0 2 3 1 2 0 3 0 0 0 0 1 0 0 0 1 0 0 17 0 1930.9497 O00291 O00291 407 423 HIP1 Huntingtin-interacting protein 1 yes yes 3 3.8147E-10 171.08 By MS/MS 2 0 1 1 6828600 0 0 6828600 4532 116 4727 19132 16154 16154 1 0 0 1543100 GHVSFKPSLDQQR DLLGSALTKSFSGKKGHVSFKPSLDQQRSC KKGHVSFKPSLDQQRSCPTCTDSLLKGDFI K G H Q R S 0 1 0 1 0 2 0 1 1 0 1 1 0 1 1 2 0 0 0 1 0 0 13 1 1497.7688 CON__Q0V8M9;Q06033 CON__Q0V8M9 222 234 ITIH3 Inter-alpha-trypsin inhibitor heavy chain H3 yes no 3 0.04434 50.286 By MS/MS 6 0 1 1 4072700 0 0 4072700 + 4533 75 4728 19133 16155 16155 1 0 0 609320 GHVTQDAPIPGSPLYTIK ADCVSAVYTVLARRRGHVTQDAPIPGSPLY TQDAPIPGSPLYTIKAFIPAIDSFGFETDL R G H I K A 1 0 0 1 0 1 0 2 1 2 1 1 0 0 3 1 2 0 1 1 0 0 18 0 1892.9996 Q15029 Q15029 855 872 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 1.0438E-09 160.48 By MS/MS By MS/MS 1.8 0.4 1 4 2 3 116050000 0 38438000 77616000 4534 1335 4729 19134;19135;19136;19137;19138 16156;16157;16158;16159 16157 4 0 17309000 17503000 GHYESGSGQTSGFGQHESGSGQSSGYSK SHGQHGSGSSYSYSRGHYESGSGQTSGFGQ GQHESGSGQSSGYSKHGSGSGHSSSQGQHG R G H S K H 0 0 0 0 0 3 2 8 2 0 0 1 0 1 0 8 1 0 2 0 0 0 28 0 2789.155 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 336 363 HRNR Hornerin yes no 3;4 2.0211E-55 194.77 By MS/MS By MS/MS 5.43 2.74 3 2 3 3 3 2 1 2 2 14 7 86256000 58107000 0 28148000 + 4535 96 4730 19139;19140;19141;19142;19143;19144;19145;19146;19147;19148;19149;19150;19151;19152;19153;19154;19155;19156;19157;19158;19159 16160;16161;16162;16163;16164;16165;16166;16167;16168;16169;16170;16171;16172;16173;16174;16175;16176;16177;16178;16179 16161 20 62919000 0 13742000 GHYTEGAELVDSVLDVVR NFVFGQSGAGNNWAKGHYTEGAELVDSVLD TEGAELVDSVLDVVRKEAESCDCLQGFQLT K G H V R K 1 1 0 2 0 0 2 2 1 0 2 0 0 0 0 1 1 0 1 4 0 0 18 0 1957.9745 P07437;P68371;Q13885;Q9BVA1;Q13509 P68371 104 121 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain no no 2;3;4 0 412.61 By MS/MS By MS/MS By MS/MS 4.5 2.02 2 2 2 5 5 3 1 1 1 1 5 16 1934200000 13393000 297780000 1623000000 4536 1079;462;1274;1254 4731 19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175;19176;19177;19178;19179;19180;19181 16180;16181;16182;16183;16184;16185;16186;16187;16188;16189;16190;16191;16192;16193;16194;16195;16196;16197;16198;16199;16200;16201;16202 16193 23 10449000 81673000 257660000 GHYTEGAELVDSVLDVVRK NFVFGQSGAGNNWAKGHYTEGAELVDSVLD EGAELVDSVLDVVRKEAESCDCLQGFQLTH K G H R K E 1 1 0 2 0 0 2 2 1 0 2 1 0 0 0 1 1 0 1 4 0 0 19 1 2086.0695 P07437;P68371;Q13885;Q9BVA1;Q13509 P68371 104 122 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-3 chain no no 3 4.1989E-41 206.81 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 25965000 0 19294000 6671300 4537 1079;462;1274;1254 4732 19182;19183;19184 16203;16204;16205 16203 2 0 5152600 930530 GHYTIGKEIIDLVLDR QLITGKEDAANNYARGHYTIGKEIIDLVLD HYTIGKEIIDLVLDRIRKLADQCTGLQGFL R G H D R I 0 1 0 2 0 0 1 2 1 3 2 1 0 0 0 0 1 0 1 1 0 0 16 1 1841.0047 P68363;Q71U36;Q9BQE3 P68363 106 121 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 3 1.2211E-05 110.97 By MS/MS 4 0.816 1 1 1 3 3798000 0 0 3798000 4538 1077;1515;1883 4733 19185;19186;19187 16206 16206 1 0 0 628700 GIAADGANALLPANR FKEGKYERAIECYTRGIAADGANALLPANR GIAADGANALLPANRAMAYLKIQKYEEAEK R G I N R A 5 1 2 1 0 0 0 2 0 1 2 0 0 0 1 0 0 0 0 0 0 0 15 0 1422.7579 Q9H6T3 Q9H6T3 308 322 RPAP3 RNA polymerase II-associated protein 3 yes yes 2 0.00033147 80.037 By MS/MS 3 0 1 1 0 0 0 0 4539 1990 4734 19188 16207 16207 1 0 0 0 GIAQMLEK MLYGLIHARYILTNRGIAQMLEKYQQGDFG RYILTNRGIAQMLEKYQQGDFGYCPRVYCE R G I E K Y 1 0 0 0 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 888.47389 P67870 P67870 93 100 CSNK2B Casein kinase II subunit beta yes yes 2 0.01344 89.55 By MS/MS By MS/MS 7 0 2 1 1 47229000 0 13393000 33836000 4540 1073 4735 19189;19190 16208;16209 16209 2 0 7690400 6004000 GIAYIEFK DAAEIRLVSKDGKSKGIAYIEFKTEADAEK SKDGKSKGIAYIEFKTEADAEKTFEEKQGT K G I F K T 1 0 0 0 0 0 1 1 0 2 0 1 0 1 0 0 0 0 1 0 0 0 8 0 939.50657 P19338 P19338 430 437 NCL Nucleolin yes yes 2 0.0068379 97.602 By matching By MS/MS By MS/MS 4.31 3.22 3 2 2 1 2 1 2 1 6 6 595700000 1369800 166360000 427970000 4541 604 4736 19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203 16210;16211;16212;16213;16214;16215;16216;16217;16218;16219;16220 16212 11 1369800 77459000 86586000 GIDFKEDGNILGHK VKFEGDTLVNRIELKGIDFKEDGNILGHKL KGIDFKEDGNILGHKLEYNYNSHNVYIMAD K G I H K L 0 0 1 2 0 0 1 3 1 2 1 2 0 1 0 0 0 0 0 0 0 0 14 1 1541.7838 CON__Q9U6Y5 CON__Q9U6Y5 127 140 yes yes 2;3 0.0001836 162.1 By matching By MS/MS By MS/MS 5.22 2.13 1 1 3 4 5 2 3 2 2 2 7 14 789080000 8622300 311700000 468750000 + 4542 101 4737 19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215;19216;19217;19218;19219;19220;19221;19222;19223;19224;19225;19226 16221;16222;16223;16224;16225;16226;16227;16228;16229;16230;16231;16232;16233;16234;16235;16236;16237 16232 17 8152100 90155000 74251000 GIDIHGVPYVINVTLPDEK KGDVRFLICTDVAARGIDIHGVPYVINVTL HGVPYVINVTLPDEKQNYVHRIGRVGRAER R G I E K Q 0 0 1 2 0 0 1 2 1 3 1 1 0 0 2 0 1 0 1 3 0 0 19 0 2078.1048 Q92499 Q92499 578 596 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2;3 8.9236E-09 119.96 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 38889000 0 5571200 33318000 4543 1705 4738 19227;19228;19229;19230 16238;16239;16240;16241 16240 4 0 2451400 6462100 GIDIQDVSMVVNYDMAK AGAKDILVATDVAGRGIDIQDVSMVVNYDM DIQDVSMVVNYDMAKNIEDYIHRIGRTGRA R G I A K N 1 0 1 3 0 1 0 1 0 2 0 1 2 0 0 1 0 0 1 3 0 0 17 0 1896.8961 Q9BUQ8 Q9BUQ8 727 743 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 2.6724E-05 107.45 By MS/MS 2 0 1 1 10552000 0 0 10552000 4544 1909 4739 19231 16242 16242 1 0 0 2384600 GIDPFSLDALSK VCGDSDKGFVVINQKGIDPFSLDALSKEGI NQKGIDPFSLDALSKEGIVALRRAKRRNME K G I S K E 1 0 0 2 0 0 0 1 0 1 2 1 0 1 1 2 0 0 0 0 0 0 12 0 1261.6554 P40227 P40227 296 307 CCT6A T-complex protein 1 subunit zeta yes yes 2 0.0016999 110.53 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 46713000 0 24021000 22692000 4545 783 4740 19232;19233;19234;19235 16243;16244 16243 2 0 7971700 3608600 GIDYDFPSLILQK FKKKERLLRKKLAKKGIDYDFPSLILQKTE KKGIDYDFPSLILQKTESISKTNRQTSTKG K G I Q K T 0 0 0 2 0 1 0 1 0 2 2 1 0 1 1 1 0 0 1 0 0 0 13 0 1507.7922 Q9BYG3 Q9BYG3 180 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 0.0076248 93.058 By matching By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 51895000 537470 9988900 41369000 4546 1936 4741 19236;19237;19238;19239 16245;16246 16246 2 715650 3457800 6289500 GIEGTVPYVTTDYNFK VGAIAIPHCVLKCQRGIEGTVPYVTTDYNF IEGTVPYVTTDYNFKLPGASEKIGAREPEE R G I F K L 0 0 1 1 0 0 1 2 0 1 0 1 0 1 1 0 3 0 2 2 0 0 16 0 1802.8727 Q5SY16 Q5SY16 655 670 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 3.8822E-05 119.76 By matching By MS/MS By MS/MS 2.67 0.471 1 2 1 1 1 38319000 1315500 8889600 28114000 4547 1446 4742 19240;19241;19242 16247;16248 16248 2 1585100 3789600 5452700 GIEILLEK KSLIPTLEKTKSTSKGIEILLEKLST____ KTKSTSKGIEILLEKLST____________ K G I E K L 0 0 0 0 0 0 2 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 913.54843 Q15397 Q15397 638 645 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.018852 85.212 By MS/MS 3 0 1 1 2952000 0 2952000 0 4548 1362 4743 19243 16249 16249 1 0 1258400 0 GIEILTDMSRPVELSDR HPTIISESFQKALEKGIEILTDMSRPVELS EILTDMSRPVELSDRETLLNSATTSLNSKV K G I D R E 0 2 0 2 0 0 2 1 0 2 2 0 1 0 1 2 1 0 0 1 0 0 17 1 1929.983 P50991 P50991 144 160 CCT4 T-complex protein 1 subunit delta yes yes 3 2.6836E-06 138.39 By MS/MS 4 0 1 1 6146700 0 0 6146700 4549 886 4744 19244 16250 16250 1 0 0 1004000 GIEKPPFELPDFIK PRHWCFKRKYLQGKRGIEKPPFELPDFIKR RGIEKPPFELPDFIKRTGIQEMREALQEKE R G I I K R 0 0 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 14 1 1628.8814 Q13435 Q13435 516 529 SF3B2 Splicing factor 3B subunit 2 yes yes 3 0.0074357 68.283 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 22351000 0 2356000 19995000 4550 1248 4745 19245;19246;19247;19248 16251;16252;16253 16252 3 0 1060900 4276900 GIEKPPFELPDFIKR PRHWCFKRKYLQGKRGIEKPPFELPDFIKR GIEKPPFELPDFIKRTGIQEMREALQEKEE R G I K R T 0 1 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 15 2 1784.9825 Q13435 Q13435 516 530 SF3B2 Splicing factor 3B subunit 2 yes yes 4 0.011091 61.097 By MS/MS 2 0 1 1 2867700 0 2867700 0 4551 1248 4746 19249 16254 16254 1 0 1291400 0 GIFEALRPLETLPVEGLIR PHYIYSPREMTRWVRGIFEALRPLETLPVE ALRPLETLPVEGLIRIWAHEALRLFQDRLV R G I I R I 1 2 0 0 0 0 3 2 0 2 4 0 0 1 2 0 1 0 0 1 0 0 19 1 2122.215 Q14204 Q14204 2805 2823 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 9.8385E-05 90.316 By MS/MS 1 0 1 1 4474100 0 0 4474100 4552 1292 4747 19250 16255 16255 1 0 0 964020 GIFEPFGR YVGSLHFNITEDMLRGIFEPFGRIESIQLM ITEDMLRGIFEPFGRIESIQLMMDSETGRS R G I G R I 0 1 0 0 0 0 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 8 0 921.47085 Q14498 Q14498 268 275 RBM39 RNA-binding protein 39 yes yes 1;2 0.0047231 104.45 By matching By MS/MS By MS/MS 4.33 0.943 2 3 3 1 1 2 6 72471000 627100 19213000 52631000 4553 1302 4748 19251;19252;19253;19254;19255;19256;19257;19258;19259 16256;16257;16258;16259;16260;16261 16259 6 489250 5509100 8297600 GIFTISDHPAEQR QRGMFTVSDHTPEQRGIFTISDHPAEQRGM QRGIFTISDHPAEQRGMFTKECEQECELAI R G I Q R G 1 1 0 1 0 1 1 1 1 2 0 0 0 1 1 1 1 0 0 0 0 0 13 0 1469.7263 O95613 O95613 196 208 PCNT Pericentrin yes yes 2 0.014888 83.081 By MS/MS 1 0 1 1 6981000 0 0 6981000 4554 331 4749 19260 16262 16262 1 0 0 1504200 GIFTSEIGTK LAKLYRSIGEYDVLRGIFTSEIGTKQITQS YDVLRGIFTSEIGTKQITQSALLAEARSDY R G I T K Q 0 0 0 0 0 0 1 2 0 2 0 1 0 1 0 1 2 0 0 0 0 0 10 0 1051.555 P78527 P78527 2941 2950 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0029483 103.87 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 3 1 32378000 1957000 11383000 19038000 4555 1089 4750 19261;19262;19263;19264;19265 16263;16264 16263 2 1957000 5428400 4102000 GIGAGGSITGLK MLWNFGIKDKPTFIKGIGAGGSITGLKFNP FIKGIGAGGSITGLKFNPLNTNQFYASSME K G I L K F 1 0 0 0 0 0 0 5 0 2 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1029.5819 Q92466 Q92466 152 163 DDB2 DNA damage-binding protein 2 yes yes 2 0.007651 98.048 By MS/MS By MS/MS 5 0 2 1 1 34314000 0 9178300 25135000 4556 1704 4751 19266;19267 16265;16266 16265 2 0 2365900 3505900 GIGFLTSGWR RGPRSFRGRKGRGAKGIGFLTSGWRFVQIK GRGAKGIGFLTSGWRFVQIKEMVPEFVVPD K G I W R F 0 1 0 0 0 0 0 3 0 1 1 0 0 1 0 1 1 1 0 0 0 0 10 0 1092.5716 Q8IXM3 Q8IXM3 40 49 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 8.6621E-07 153.78 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 19851000 0 2579500 17272000 4557 1584 4752 19268;19269;19270;19271 16267;16268;16269;16270 16270 4 0 1809100 5053900 GIGIHHGGLLPILK KKLPQVEHVLPLLKRGIGIHHGGLLPILKE RGIGIHHGGLLPILKETIEILFSEGLIKAL R G I L K E 0 0 0 0 0 0 0 4 2 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1423.8664 P42285 P42285 451 464 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.00010745 117.98 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 36279000 0 5417200 30862000 4558 800 4753 19272;19273;19274;19275 16271;16272 16272 2 0 2439400 6754700 GIGMGNIGPAGMGMEGIGFGINK LGPGGQPIDANHLNKGIGMGNIGPAGMGME PAGMGMEGIGFGINKMGGMEGPFGGGMENM K G I N K M 1 0 2 0 0 0 1 9 0 4 0 1 3 1 1 0 0 0 0 0 0 0 23 0 2177.0432 P52272 P52272 323 345 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 8.7759E-44 199.61 By MS/MS By MS/MS By MS/MS 3.65 1.39 3 6 18 11 8 5 1 2 33 17 1321100000 9347900 594880000 716880000 4559 902 4754;4755;4756 19276;19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301;19302;19303;19304;19305;19306;19307;19308;19309;19310;19311;19312;19313;19314;19315;19316;19317;19318;19319;19320;19321;19322;19323;19324;19325;19326;19327 16273;16274;16275;16276;16277;16278;16279;16280;16281;16282;16283;16284;16285;16286;16287;16288;16289;16290;16291;16292;16293;16294;16295;16296;16297;16298;16299;16300;16301;16302;16303;16304;16305;16306;16307;16308;16309;16310;16311;16312;16313;16314 16299 425;426;427 41 10785000 227520000 134600000 GIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK VVRADILEDKDGKSRGIGTVTFEQSIEAVQ MFNGQLLFDRPMHVKMDERALPKGDFFPPE R G I V K M 2 1 1 1 0 3 2 3 1 3 2 1 2 3 1 2 2 0 0 3 0 0 33 1 3662.8589 P52272 P52272 245 277 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 4 1.2024E-34 116.52 By MS/MS 3 0.816 1 1 1 3 33340000 0 0 33340000 4560 902 4757 19328;19329;19330 16315;16316 16315 2 0 0 7154900 GIHHPTPIQIQGIPTILSGR EMKFPAAILRGLKKKGIHHPTPIQIQGIPT TPIQIQGIPTILSGRDMIGIAFTGSGKTLV K G I G R D 0 1 0 0 0 2 0 3 2 5 1 0 0 0 3 1 2 0 0 0 0 0 20 0 2134.2011 Q9UJV9 Q9UJV9 200 219 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 4 0.001449 58.997 By MS/MS 3 0 1 1 5828300 0 0 5828300 4561 2171 4758 19331 16317 16317 1 0 0 1130400 GIHNSIGDYR GVDLASVEQHINSHRGIHNSIGDYRWQLDK INSHRGIHNSIGDYRWQLDKIKADLREKSA R G I Y R W 0 1 1 1 0 0 0 2 1 2 0 0 0 0 0 1 0 0 1 0 0 0 10 0 1130.5469 P15924 P15924 223 232 DSP Desmoplakin yes yes 2 0.00034424 124.74 By MS/MS By MS/MS 5.25 4.26 2 1 1 3 1 24774000 15676000 0 9098100 4562 572 4759 19332;19333;19334;19335 16318;16319;16320;16321 16319 4 16013000 0 1960300 GIHPTIISESFQK IAGSLLDSCTKLLQKGIHPTIISESFQKAL QKGIHPTIISESFQKALEKGIEILTDMSRP K G I Q K A 0 0 0 0 0 1 1 1 1 3 0 1 0 1 1 2 1 0 0 0 0 0 13 0 1455.7722 P50991 P50991 127 139 CCT4 T-complex protein 1 subunit delta yes yes 2;3 0.0033681 104.95 By MS/MS By MS/MS 6 2.83 2 1 1 2 21587000 0 6938000 14649000 4563 886 4760 19336;19337;19338 16322;16323;16324 16322 3 0 2302500 7150500 GIIRPGTAFELLEAQAATGYVIDPIK DATKERLSVYQAMKKGIIRPGTAFELLEAQ LEAQAATGYVIDPIKGLKLTVEEAVRMGIV K G I I K G 4 1 0 1 0 1 2 3 0 4 2 1 0 1 2 0 2 0 1 1 0 0 26 1 2742.4956 Q15149 Q15149 4093 4118 PLEC Plectin yes yes 3 2.532E-09 88.517 By MS/MS 1.5 0.5 1 1 2 9371400 0 0 9371400 4564 1348 4761 19339;19340 16325 16325 1 0 0 2031200 GIISPVGDAYK AKDYMNGTGRYTVVKGIISPVGDAYKKKGL TVVKGIISPVGDAYKKKGLIPAYHRVIMAE K G I Y K K 1 0 0 1 0 0 0 2 0 2 0 1 0 0 1 1 0 0 1 1 0 0 11 0 1118.5972 Q9HAN9 Q9HAN9 46 56 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes yes 2 0.065705 70.056 By MS/MS 6 0 1 1 16061000 0 0 16061000 4565 2002 4762 19341 16326 16326 1 0 0 2402900 GILAADESTGSIAK KELSDIAHRIVAPGKGILAADESTGSIAKR KGILAADESTGSIAKRLQSIGTENTEENRR K G I A K R 3 0 0 1 0 0 1 2 0 2 1 1 0 0 0 2 1 0 0 0 0 0 14 0 1331.6933 P04075 P04075 29 42 ALDOA Fructose-bisphosphate aldolase A yes yes 2 0.00016611 152.62 By MS/MS 6 0 1 1 6327300 0 6327300 0 4566 409 4763 19342 16327 16327 1 0 2190300 0 GILLFGPPGTGK IKFPHLFTGKRTPWRGILLFGPPGTGKSYL PWRGILLFGPPGTGKSYLAKAVATEANNST R G I G K S 0 0 0 0 0 0 0 4 0 1 2 1 0 1 2 0 1 0 0 0 0 0 12 0 1155.6652 Q9UN37;Q6PIW4;O75351 Q9UN37 162 173 VPS4A;FIGNL1;VPS4B Vacuolar protein sorting-associated protein 4A;Fidgetin-like protein 1;Vacuolar protein sorting-associated protein 4B no no 2 0.0040995 105.2 By MS/MS 4.5 0.5 1 1 2 15249000 0 0 15249000 4567 2201;252 4764 19343;19344 16328 16328 1 0 0 2368100 GILLQLFGGTR SALAPSIYEHEDIKKGILLQLFGGTRKDFS DIKKGILLQLFGGTRKDFSHTGRGKFRAEI K G I T R K 0 1 0 0 0 1 0 3 0 1 3 0 0 1 0 0 1 0 0 0 0 0 11 0 1173.687 P33991 P33991 479 489 MCM4 DNA replication licensing factor MCM4 yes yes 2 0.00065518 117.89 By matching By matching By MS/MS 2.25 0.433 3 1 1 1 2 23704000 15189000 2249000 6265600 4568 731 4765 19345;19346;19347;19348 16329;16330 16329 2 18301000 1012800 1328300 GILQELFLNK GSNSQERYIQAEREKGILQELFLNKESPHE AEREKGILQELFLNKESPHEPDPEPYEPIP K G I N K E 0 0 1 0 0 1 1 1 0 1 3 1 0 1 0 0 0 0 0 0 0 0 10 0 1173.6758 Q96QC0 Q96QC0 492 501 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 0.0071046 93.374 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 1 3 22176000 539160 3900300 17736000 4569 1823 4766 19349;19350;19351;19352;19353 16331;16332 16331 2 539160 1756300 3841800 GINAIFER FLKECGLKLTQVSPRGINAIFERLRNILHE LTQVSPRGINAIFERLRNILHESEIDKRVQ R G I E R L 1 1 1 0 0 0 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 8 0 918.49232 Q9HCG8 Q9HCG8 311 318 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 2 0.0048053 100.39 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 13508000 0 4871300 8636500 4570 2012 4767 19354;19355;19356 16333;16334 16334 2 0 2193600 1934200 GINILISTPGR MGGEKRKSEKARLRKGINILISTPGRLVDH RLRKGINILISTPGRLVDHIKSTKNIHFSR K G I G R L 0 1 1 0 0 0 0 2 0 3 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1139.6663 Q9H8H2 Q9H8H2 356 366 DDX31 Probable ATP-dependent RNA helicase DDX31 yes yes 2 0.0088182 93.111 By MS/MS 6 3 1 1 2 0 0 0 0 4571 1996 4768 19357;19358 16335;16336 16335 2 0 0 0 GINLPTPPGLSPGDLDVFVR FPDLSSNDMLLFIVKGINLPTPPGLSPGDL TPPGLSPGDLDVFVRFDFPYPNVEEAQKDK K G I V R F 0 1 1 2 0 0 0 3 0 1 3 0 0 1 4 1 1 0 0 2 0 0 20 0 2063.1051 Q6P1N0 Q6P1N0 664 683 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 7.2103E-06 97.273 By MS/MS By matching 2.5 0.5 1 1 1 1 6115800 0 2095300 4020600 4572 1488 4769 19359;19360 16337 16337 1 0 943530 779800 GINSSNVENQLQATQAAR NNQGTVNWSVDDIVKGINSSNVENQLQATQ SSNVENQLQATQAARKLLSREKQPPIDNII K G I A R K 3 1 3 0 0 3 1 1 0 1 1 0 0 0 0 2 1 0 0 1 0 0 18 0 1899.9399 P52292 P52292 84 101 KPNA2 Importin subunit alpha-1 yes yes 2 7.6719E-157 289.86 By MS/MS By MS/MS 4.14 1.64 1 2 2 1 1 3 4 160650000 0 77460000 83189000 4573 903 4770 19361;19362;19363;19364;19365;19366;19367 16338;16339;16340;16341;16342 16341 5 0 26200000 13988000 GINTLVTYDMVPEPK TYFNKPDIDAWELRKGINTLVTYDMVPEPK GINTLVTYDMVPEPKIIDAALRACRRLNDF K G I P K I 0 0 1 1 0 0 1 1 0 1 1 1 1 0 2 0 2 0 1 2 0 0 15 0 1675.8491 P20674 P20674 73 87 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 2 0.0031742 87.363 By MS/MS 10 0 1 1 3587800 0 3587800 0 4574 618 4771 19368 16343 16343 1 0 18151000 0 GIPAGVPMPQAPAGLAGPVR AGAAGGPGIGRAAGRGIPAGVPMPQAPAGL VPMPQAPAGLAGPVRGVGGPSQQVMTPQGR R G I V R G 4 1 0 0 0 1 0 4 0 1 1 0 1 0 5 0 0 0 0 2 0 0 20 0 1855.0138 P14678 P14678 113 132 SNRPB Small nuclear ribonucleoprotein-associated proteins B and B yes yes 2 2.3656E-05 90.614 By MS/MS 7 0 1 1 6534000 0 0 6534000 4575 563 4772 19369 16344;16345 16344 2 0 0 1159400 GIPEFWFTIFR VTEKAAATAEEPDPKGIPEFWFTIFRNVDM PDPKGIPEFWFTIFRNVDMLSELVQEYDEP K G I F R N 0 1 0 0 0 0 1 1 0 2 0 0 0 3 1 0 1 1 0 0 0 0 11 0 1411.7289 Q99733 Q99733 158 168 NAP1L4 Nucleosome assembly protein 1-like 4 yes yes 2 1.6823E-09 166.52 By MS/MS 3.5 0.5 1 1 2 8468800 0 0 8468800 4576 1862 4773 19370;19371 16346 16346 1 0 0 1409000 GIPEFWLTVFK KIEDEKKDEEKEDPKGIPEFWLTVFKNVDL EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP K G I F K N 0 0 0 0 0 0 1 1 0 1 1 1 0 2 1 0 1 1 0 1 0 0 11 0 1335.7227 P55209 P55209 166 176 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 2 0.0073735 96.331 By MS/MS By MS/MS 4.11 1.79 1 1 1 2 2 1 1 2 7 116700000 0 15385000 101320000 4577 940 4774 19372;19373;19374;19375;19376;19377;19378;19379;19380 16347;16348;16349;16350;16351;16352 16349 6 0 4519900 16807000 GIPHLVTHDAR KYKLCKVRKIFVGTKGIPHLVTHDARTIRY VGTKGIPHLVTHDARTIRYPDPLIKVNDTI K G I A R T 1 1 0 1 0 0 0 1 2 1 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1214.652 P62701;Q8TD47;P22090 P62701 135 145 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2;3 0.00019913 137.13 By matching By MS/MS By MS/MS 6.62 0.738 7 4 2 2 5 6 861230000 10670000 191050000 659510000 4578 1029 4775 19381;19382;19383;19384;19385;19386;19387;19388;19389;19390;19391;19392;19393 16353;16354;16355;16356;16357;16358;16359;16360 16356 8 21824000 74166000 104500000 GIPIEVIPMAYVPVSR DFRKDSKNLGDQWHKGIPIEVIPMAYVPVS IPIEVIPMAYVPVSRAVSQKFGGVVELRMA K G I S R A 1 1 0 0 0 0 1 1 0 3 0 0 1 0 3 1 0 0 1 3 0 0 16 0 1739.9644 P49247 P49247 212 227 RPIA Ribose-5-phosphate isomerase yes yes 2 9.0451E-05 105.65 By matching By MS/MS 6.33 0.471 2 1 1 2 6929500 0 727850 6201600 4579 851 4776 19394;19395;19396 16361 16361 1 0 251960 963810 GIPILSLDWLHQSR DRIRRTVKFLCALGRGIPILSLDWLHQSRK RGIPILSLDWLHQSRKAGFFLPPDEYVVTD R G I S R K 0 1 0 1 0 1 0 1 1 2 3 0 0 0 1 2 0 1 0 0 0 0 14 0 1633.894 Q14676 Q14676 1944 1957 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 0.00027932 115 By MS/MS By MS/MS 4.07 2.19 2 3 2 1 4 2 6 8 40953000 0 6574900 34378000 4580 1310 4777 19397;19398;19399;19400;19401;19402;19403;19404;19405;19406;19407;19408;19409;19410 16362;16363;16364;16365;16366;16367;16368;16369 16366 7 0 2652600 6877100 GIPLESTDGER DKVWRLDLVMVILFKGIPLESTDGERLVKA ILFKGIPLESTDGERLVKAAQCGHPVLCVQ K G I E R L 0 1 0 1 0 0 2 2 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1172.5673 P08651;O00712;Q14938;Q12857 P08651 140 150 NFIC;NFIB;NFIX;NFIA Nuclear factor 1 C-type;Nuclear factor 1 B-type;Nuclear factor 1 X-type;Nuclear factor 1 A-type yes no 2 0.00065518 117.89 By matching By MS/MS 4.67 0.943 2 1 1 2 39762000 3440000 0 36322000 4581 475 4778 19411;19412;19413 16370;16371 16370 2 2683800 0 5589800 GIPTYIYYFPR WYGTERLIRKHLAARGIPTYIYYFPRSKSA LAARGIPTYIYYFPRSKSAVLHSQSSSSSS R G I P R S 0 1 0 0 0 0 0 1 0 2 0 0 0 1 2 0 1 0 3 0 0 0 11 0 1388.7129 Q86WJ1 Q86WJ1 867 877 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes yes 2 0.0008151 116.25 By MS/MS 2 0 1 1 4680400 0 0 4680400 4582 1556 4779 19414 16372 16372 1 0 0 1057700 GIPVELWAHYVEELNSTQR VEIPSEWHIELMLDRGIPVELWAHYVEELN ELWAHYVEELNSTQRVAVEDSVFLVFSLKK R G I Q R V 1 1 1 0 0 1 3 1 1 1 2 0 0 0 1 1 1 1 1 2 0 0 19 0 2240.1226 Q9H583 Q9H583 762 780 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2;3 1.2454E-09 136.83 By MS/MS 1.33 0.471 2 1 3 26549000 0 0 26549000 4583 1984 4780 19415;19416;19417 16373;16374;16375 16373 3 0 0 5732400 GIPVLVGLLDHPK CYRNDKVKTDVRKLKGIPVLVGLLDHPKKE LKGIPVLVGLLDHPKKEVHLGACGALKNIS K G I P K K 0 0 0 1 0 0 0 2 1 1 3 1 0 0 2 0 0 0 0 2 0 0 13 0 1356.8129 O60716 O60716 409 421 CTNND1 Catenin delta-1 yes yes 3 0.03613 49.929 By MS/MS 2.5 0.5 1 1 2 4292100 0 0 4292100 4584 230 4781 19418;19419 16376 16376 1 0 0 886200 GIPVVEHK IDPENNLISIWNNGKGIPVVEHKVEKMYVP SIWNNGKGIPVVEHKVEKMYVPALIFGQLL K G I H K V 0 0 0 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 0 2 0 0 8 0 877.50215 P11388;Q02880 P11388 124 131 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.011508 91.906 By MS/MS 1 0 1 1 11007000 0 0 11007000 4585 524;1150 4782 19420 16377;16378 16378 2 0 0 2371600 GIPVVEHKVEK IDPENNLISIWNNGKGIPVVEHKVEKMYVP NNGKGIPVVEHKVEKMYVPALIFGQLLTSS K G I E K M 0 0 0 0 0 0 2 1 1 1 0 2 0 0 1 0 0 0 0 3 0 0 11 1 1233.7081 P11388;Q02880 P11388 124 134 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2;3 0.012706 100.57 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 39176000 0 11707000 27469000 4586 524;1150 4783 19421;19422;19423;19424 16379;16380;16381 16379 3 0 5473900 5918700 GIRPAINVGLSVSR ITDGQIFLETELFYKGIRPAINVGLSVSRV KGIRPAINVGLSVSRVGSAAQTRAMKQVAG K G I S R V 1 2 1 0 0 0 0 2 0 2 1 0 0 0 1 2 0 0 0 2 0 0 14 1 1437.8416 P25705 P25705 403 416 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2;3 0.0042231 118.87 By MS/MS By MS/MS 4 0 3 1 2 27954000 0 11651000 16303000 4587 661 4784 19425;19426;19427 16382;16383;16384 16384 3 0 3866600 2662700 GISDLAQHYLMR EDIIQLKPDVVITEKGISDLAQHYLMRANI TEKGISDLAQHYLMRANITAIRRVRKTDNN K G I M R A 1 1 0 1 0 1 0 1 1 1 2 0 1 0 0 1 0 0 1 0 0 0 12 0 1402.7027 P49368 P49368 295 306 CCT3 T-complex protein 1 subunit gamma yes yes 2;3 5.5272E-05 145.25 By matching By MS/MS By MS/MS 3.83 0.373 1 5 1 3 2 31941000 3600600 12523000 15817000 4588 854 4785 19428;19429;19430;19431;19432;19433 16385;16386;16387;16388 16385 4 2809100 4230600 2583400 GISEDSHLESLQDVGQSAAPTFMISPETVTGTGK TPVPIKDMEIAQTQKGISEDSHLESLQDVG PTFMISPETVTGTGKKCSLPAEEDSVLEKL K G I G K K 2 0 0 2 0 2 3 4 1 2 2 1 1 1 2 5 4 0 0 2 0 0 34 0 3488.6617 P27816 P27816 600 633 MAP4 Microtubule-associated protein 4 yes yes 3 6.0037E-59 139.59 By MS/MS 1 0 1 1 10533000 0 0 10533000 4589 683 4786 19434 16389 16389 1 0 0 2269400 GISEETTTGVHNLYK NLIHTKYPQLLPGIRGISEETTTGVHNLYK GISEETTTGVHNLYKMMANGILKVPAINVN R G I Y K M 0 0 1 0 0 0 2 2 1 1 1 1 0 0 0 1 3 0 1 1 0 0 15 0 1647.8104 P23526 P23526 152 166 AHCY Adenosylhomocysteinase yes yes 2;3 2.5445E-34 208.17 By MS/MS By MS/MS By MS/MS 5.67 0.816 5 2 2 2 2 5 84671000 16743000 13864000 54063000 4590 643 4787 19435;19436;19437;19438;19439;19440;19441;19442;19443 16390;16391;16392;16393;16394 16391 5 13413000 3573800 8158100 GISHVIVDEIHER CTVGVLLRKLEAGIRGISHVIVDEIHERDI IRGISHVIVDEIHERDINTDFLLVVLRDVV R G I E R D 0 1 0 1 0 0 2 1 2 3 0 0 0 0 0 1 0 0 0 2 0 0 13 0 1502.7841 Q08211 Q08211 504 516 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.4119E-11 181.44 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 502600000 0 64289000 438310000 4591 1182 4788 19444;19445;19446;19447;19448;19449;19450 16395;16396;16397;16398;16399;16400 16399 6 0 29103000 97516000 GISLANWMCLAK ELARTLKRLGMDGYRGISLANWMCLAKWES GYRGISLANWMCLAKWESGYNTRATNYNAG R G I A K W 2 0 1 0 1 0 0 1 0 1 2 1 1 0 0 1 0 1 0 0 0 0 12 0 1362.6788 P61626 P61626 40 51 LYZ Lysozyme C yes yes 2 1.0117E-05 157.91 By MS/MS 7.5 1.12 1 1 1 1 4 24475000 24475000 0 0 4592 997 4789 19451;19452;19453;19454 16401;16402;16403 16403 3 21936000 0 0 GISLNPEQWSQLK EYWMDPEGEMKPGRKGISLNPEQWSQLKEQ RKGISLNPEQWSQLKEQISDIDDAVRKL__ K G I L K E 0 0 1 0 0 2 1 1 0 1 2 1 0 0 1 2 0 1 0 0 0 0 13 0 1498.778 P53999 P53999 102 114 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2 3.7843E-08 173.64 By MS/MS By MS/MS By MS/MS 8.12 0.927 2 4 1 1 1 3 4 303980000 7968000 71926000 224090000 4593 926 4790 19455;19456;19457;19458;19459;19460;19461;19462 16404;16405;16406;16407;16408;16409;16410;16411;16412 16407 9 6840800 33132000 64189000 GISQEQMNEFR TINEVENQILTRDAKGISQEQMNEFRASFN RDAKGISQEQMNEFRASFNHFDRDHSGTLG K G I F R A 0 1 1 0 0 2 2 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1337.6034 P12814 P12814 742 752 ACTN1 Alpha-actinin-1 yes yes 2 1.756E-09 166.16 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 47652000 0 34086000 13566000 4594 540 4791;4792 19463;19464;19465;19466 16413;16414;16415;16416 16415 236 3 0 15349000 2995600 GISQEQMQEFR TINEVENQILTRDAKGISQEQMQEFRASFN RDAKGISQEQMQEFRASFNHFDKDHGGALG K G I F R A 0 1 0 0 0 3 2 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1351.619 O43707 O43707 761 771 ACTN4 Alpha-actinin-4 yes yes 2 1.6799E-73 242.2 By MS/MS By MS/MS 2 0.756 2 3 2 4 3 162690000 0 119630000 43058000 4595 210 4793;4794 19467;19468;19469;19470;19471;19472;19473 16417;16418;16419;16420;16421;16422;16423 16421 85 7 0 54055000 9514700 GISTKPVYIPEVELNHK KRDEFEFLEKASKLRGISTKPVYIPEVELN STKPVYIPEVELNHKLIKGIHQSTIDLKNE R G I H K L 0 0 1 0 0 0 2 1 1 2 1 2 0 0 2 1 1 0 1 2 0 0 17 1 1923.0466 Q14258 Q14258 316 332 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 3;4 0.0010269 75.018 By MS/MS By MS/MS 3.6 0.8 3 1 1 2 3 27363000 0 14698000 12665000 4596 1297 4795 19474;19475;19476;19477;19478 16424;16425;16426 16425 3 0 6265900 2175400 GISVHISNAEPK DQIAQSLCGEDLIIKGISVHISNAEPKHNS IIKGISVHISNAEPKHNSNRQLERSGRFGG K G I P K H 1 0 1 0 0 0 1 1 1 2 0 1 0 0 1 2 0 0 0 1 0 0 12 0 1250.6619 Q13148 Q13148 252 263 TARDBP TAR DNA-binding protein 43 yes yes 2 4.2819E-13 184.71 By MS/MS 5 0 1 1 33545000 0 0 33545000 4597 1224 4796 19479 16427 16427 1 0 0 4679000 GISVNAEQVR CKNSHCAQTVSSVFKGISVNAEQVRIELEP SSVFKGISVNAEQVRIELEPPDKAKPLGTV K G I V R I 1 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 2 0 0 10 0 1071.5673 Q9H583 Q9H583 1153 1162 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00030848 123.98 By MS/MS 1.5 0.5 1 1 2 37576000 0 0 37576000 4598 1984 4797 19480;19481 16428 16428 1 0 0 8152300 GITINAAHVEYSTAAR KKYEEIDNAPEERARGITINAAHVEYSTAA ITINAAHVEYSTAARHYAHTDCPGHADYVK R G I A R H 4 1 1 0 0 0 1 1 1 2 0 0 0 0 0 1 2 0 1 1 0 0 16 0 1672.8533 P49411 P49411 105 120 TUFM Elongation factor Tu, mitochondrial yes yes 2;3 4.9466E-05 113.25 By MS/MS 5 0 2 2 28553000 0 0 28553000 4599 856 4798 19482;19483 16429;16430 16430 2 0 0 3982700 GITPLLER GFWAAGWRVWLFFMRGITPLLERWLGNLLA VWLFFMRGITPLLERWLGNLLARQFEGRHS R G I E R W 0 1 0 0 0 0 1 1 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 897.52837 Q6P2Q9 Q6P2Q9 643 650 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00015759 143 By MS/MS By MS/MS 1 0 2 1 1 59263000 0 29626000 29637000 4600 1490 4799 19484;19485 16431;16432 16431 2 0 14481000 6385800 GIVDQSQQAYQEAFEISK YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE DQSQQAYQEAFEISKKEMQPTHPIRLGLAL K G I S K K 2 0 0 1 0 4 2 1 0 2 0 1 0 1 0 2 0 0 1 1 0 0 18 0 2039.98 P63104 P63104 140 157 YWHAZ 14-3-3 protein zeta/delta yes yes 2;3 2.0257E-09 157.2 By MS/MS By MS/MS 6.4 0.49 3 2 1 4 112990000 0 3048200 109940000 4601 1059 4800 19486;19487;19488;19489;19490 16433;16434;16435;16436 16434 4 0 1055200 18318000 GIVDQSQQAYQEAFEISKK YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE QSQQAYQEAFEISKKEMQPTHPIRLGLALN K G I K K E 2 0 0 1 0 4 2 1 0 2 0 2 0 1 0 2 0 0 1 1 0 0 19 1 2168.075 P63104 P63104 140 158 YWHAZ 14-3-3 protein zeta/delta yes yes 3 0.00027959 75.239 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 24623000 0 15350000 9273300 4602 1059 4801 19491;19492;19493;19494 16437;16438;16439 16437 3 0 6844900 1554000 GIVDSITGQR TENLEKISITEGIERGIVDSITGQRLLEAQ EGIERGIVDSITGQRLLEAQACTGGIIHPT R G I Q R L 0 1 0 1 0 1 0 2 0 2 0 0 0 0 0 1 1 0 0 1 0 0 10 0 1044.5564 P15924 P15924 2640 2649 DSP Desmoplakin yes yes 2 0.00052978 128.69 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 52753000 0 26878000 25875000 4603 572 4802 19495;19496;19497 16440;16441 16440 2 0 13072000 5575200 GIVEFASK RAVVIVDDRGRSTGKGIVEFASKPAARKAF RGRSTGKGIVEFASKPAARKAFERCSEGVF K G I S K P 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 849.45962 P23246 P23246 414 421 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.011737 91.626 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 239860000 0 48382000 191480000 4604 638 4803 19498;19499;19500;19501 16442;16443 16443 2 0 21986000 39610000 GIVEFASKPAAR RAVVIVDDRGRSTGKGIVEFASKPAARKAF TGKGIVEFASKPAARKAFERCSEGVFLLTT K G I A R K 3 1 0 0 0 0 1 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 12 1 1244.6877 P23246 P23246 414 425 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 0.00053236 139.96 By MS/MS By MS/MS 2.23 1.05 4 4 3 2 7 6 639680000 0 311440000 328230000 4605 638 4804 19502;19503;19504;19505;19506;19507;19508;19509;19510;19511;19512;19513;19514 16444;16445;16446;16447;16448;16449;16450;16451;16452;16453;16454 16453 11 0 136930000 69926000 GIVEFSGK RAVVIVDDRGRPSGKGIVEFSGKPAARKAL RGRPSGKGIVEFSGKPAARKALDRCSEGSF K G I G K P 0 0 0 0 0 0 1 2 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 0 835.44397 Q15233 Q15233 191 198 NONO Non-POU domain-containing octamer-binding protein yes yes 1;2 0.0033389 119.41 By matching By MS/MS By MS/MS 3.89 0.737 3 4 2 1 3 5 319300000 7462700 54419000 257420000 4606 1351 4805 19515;19516;19517;19518;19519;19520;19521;19522;19523 16455;16456;16457;16458;16459;16460 16456 6 5822200 18222000 42938000 GIVEFSGKPAAR RAVVIVDDRGRPSGKGIVEFSGKPAARKAL SGKGIVEFSGKPAARKALDRCSEGSFLLTT K G I A R K 2 1 0 0 0 0 1 2 0 1 0 1 0 1 1 1 0 0 0 1 0 0 12 1 1230.6721 Q15233 Q15233 191 202 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 9.3287E-12 183.65 By MS/MS By MS/MS 4.17 1.97 3 2 4 4 3 3 4 13 10 1035500000 0 671610000 363920000 4607 1351 4806 19524;19525;19526;19527;19528;19529;19530;19531;19532;19533;19534;19535;19536;19537;19538;19539;19540;19541;19542;19543;19544;19545;19546 16461;16462;16463;16464;16465;16466;16467;16468;16469;16470;16471;16472;16473;16474;16475;16476;16477;16478;16479 16477 19 0 226830000 65373000 GIVKDIIHDPGR RLRAVDFAERHGYIKGIVKDIIHDPGRGAP YIKGIVKDIIHDPGRGAPLAKVVFRDPYRF K G I G R G 0 1 0 2 0 0 0 2 1 3 0 1 0 0 1 0 0 0 0 1 0 0 12 1 1318.7357 P62917 P62917 43 54 RPL8 60S ribosomal protein L8 yes yes 3 0.0064197 79.466 By MS/MS 6.5 0.5 1 1 2 32434000 0 32434000 0 4608 1052 4807 19547;19548 16480 16480 1 0 11654000 0 GIYAYGFEKPSAIQQR TPTFDTMGLREDLLRGIYAYGFEKPSAIQQ IYAYGFEKPSAIQQRAIKQIIKGRDVIAQS R G I Q R A 2 1 0 0 0 2 1 2 0 2 0 1 0 1 1 1 0 0 2 0 0 0 16 1 1826.9315 P38919;P60842;Q14240 P38919 52 67 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2;3 1.5051E-58 229.68 By MS/MS By MS/MS 4.12 1.96 2 2 2 3 3 1 3 8 8 708700000 0 381130000 327570000 4609 775;967;1294 4808 19549;19550;19551;19552;19553;19554;19555;19556;19557;19558;19559;19560;19561;19562;19563;19564 16481;16482;16483;16484;16485;16486;16487;16488;16489;16490;16491;16492;16493 16488 13 0 106010000 50325000 GIYFADMVSK IAPPEAPVTGYMFGKGIYFADMVSKSANYC YMFGKGIYFADMVSKSANYCHTSQGDPIGL K G I S K S 1 0 0 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 1 0 0 10 0 1129.5478 P09874 P09874 894 903 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.036878 76.221 By MS/MS By matching 3.5 1.71 1 1 1 1 1 1 4 2 138950000 0 122980000 15969000 4610 492 4809 19565;19566;19567;19568;19569;19570 16494 16494 1 0 54663000 2310300 GIYQSLEGAVQAGQLK EMELPAKEADKNRSKGIYQSLEGAVQAGQL IYQSLEGAVQAGQLKVPPGYHPLDVEKEWG K G I L K V 2 0 0 0 0 3 1 3 0 1 2 1 0 0 0 1 0 0 1 1 0 0 16 0 1660.8784 Q15149 Q15149 478 493 PLEC Plectin yes yes 2;3 3.5572E-05 123.62 By MS/MS By matching 1.33 0.471 2 1 2 1 23546000 0 22556000 990080 4611 1348 4810 19571;19572;19573 16495;16496 16495 2 0 11025000 223740 GKADDMSDDQGTSVQSK IQARLPFKRLNLVPKGKADDMSDDQGTSVQ ADDMSDDQGTSVQSKSPDLEASLDTLENNC K G K S K S 1 0 0 4 0 2 0 2 0 0 0 2 1 0 0 3 1 0 0 1 0 0 17 1 1767.7581 Q13111 Q13111 48 64 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3 0.0068024 57.173 By MS/MS 2 0 1 1 1721900 0 1721900 0 4612 1220 4811 19574 16497 16497 1 0 775420 0 GKDESQHTESMVLQSSR SAFSPASPATPNGTKGKDESQHTESMVLQS DESQHTESMVLQSSRGIKVEGCVRMYELVH K G K S R G 0 1 0 1 0 2 2 1 1 0 1 1 1 0 0 4 1 0 0 1 0 0 17 1 1917.8851 Q53GS7 Q53GS7 108 124 GLE1 Nucleoporin GLE1 yes yes 3 9.1997E-06 104.78 By MS/MS 3 0 1 1 5893000 0 0 5893000 4613 1425 4812 19575 16498 16498 1 0 0 1143000 GKDHVVSDFSEHGSLK PVGLEGLLTTKWLLRGKDHVVSDFSEHGSL KDHVVSDFSEHGSLKYLHENLPIPQRNTN_ R G K L K Y 0 0 0 2 0 0 1 2 2 0 1 2 0 1 0 3 0 0 0 2 0 0 16 1 1740.8431 P54886 P54886 766 781 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 4 0.068595 29.422 By MS/MS By matching 2.5 1.12 1 1 1 1 3 1 4817700 0 3927300 890360 4614 932 4813 19576;19577;19578;19579 16499 16499 1 0 1752700 145420 GKDLIGVQNLLK TWIREKEPIAASTNRGKDLIGVQNLLKKHQ TNRGKDLIGVQNLLKKHQALQAEIAGHEPR R G K L K K 0 0 1 1 0 1 0 2 0 1 3 2 0 0 0 0 0 0 0 1 0 0 12 1 1296.7765 Q13813 Q13813 813 824 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00021718 151.07 By MS/MS By matching 1.5 0.5 1 1 1 1 15647000 0 11262000 4384600 4615 1268 4814 19580;19581 16500 16500 1 0 5504800 990830 GKDLSMIVLLPNEIDGLQK SLEDVQAKVLEIPYKGKDLSMIVLLPNEID SMIVLLPNEIDGLQKLEEKLTAEKLMEWTS K G K Q K L 0 0 1 2 0 1 1 2 0 2 4 2 1 0 1 1 0 0 0 1 0 0 19 1 2082.1395 P29508;P48594 P29508 238 256 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 3 0.015887 45.047 By MS/MS 8.5 0.5 1 1 2 4556100 4556100 0 0 4616 700 4815 19582;19583 16501 16501 1 3123300 0 0 GKDQVVILHHMLSK VAERQRSLFVVVGDRGKDQVVILHHMLSKA RGKDQVVILHHMLSKATVKARPSVLWCYKK R G K S K A 0 0 0 1 0 1 0 1 2 1 2 2 1 0 0 1 0 0 0 2 0 0 14 1 1603.8868 Q9H0A0 Q9H0A0 33 46 NAT10 N-acetyltransferase 10 yes yes 2;4 0.0032826 123.28 By MS/MS 2 0 2 2 47992000 0 0 47992000 4617 1959 4816 19584;19585 16502;16503 16503 2 0 0 10845000 GKDSQPWEQALGR GELGPEEPLTTQQPRGKDSQPWEQALGRFW PRGKDSQPWEQALGRFWDYLRWVQTLSDQV R G K G R F 1 1 0 1 0 2 1 2 0 0 1 1 0 0 1 1 0 1 0 0 0 0 13 1 1470.7215 CON__Q03247 CON__Q03247 37 49 yes yes 2;3 1.8727E-11 152.54 By matching By MS/MS 7 1.22 1 4 3 2 2 3 9 144990000 0 9769200 135220000 + 4618 72 4817 19586;19587;19588;19589;19590;19591;19592;19593;19594;19595;19596;19597 16504;16505;16506;16507;16508;16509;16510 16504 6 0 4082100 23543000 GKDYYQTLGLAR ______________________________ ______________________________ M G K A R G 1 1 0 1 0 1 0 2 0 0 2 1 0 0 0 0 1 0 2 0 0 0 12 1 1383.7147 P25685 P25685 2 13 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2 0.0036064 126.49 By MS/MS 5 0 1 1 16666000 0 0 16666000 4619 660 4818 19598 16511 16511 1 0 0 2324600 GKEAVVQEPER QSEAQINTAKRLLEKGKEAVVQEPERSWFQ LLEKGKEAVVQEPERSWFQTKEERKKEKIA K G K E R S 1 1 0 0 0 1 3 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 11 1 1240.6412 Q96GQ7 Q96GQ7 640 650 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 3 0.0056318 81.676 By MS/MS 2 0 1 1 4361300 0 4361300 0 4620 1793 4819 19599 16512 16512 1 0 1964000 0 GKEDALVTK VMVEPHRHEGVFICRGKEDALVTKNLVPGE GVFICRGKEDALVTKNLVPGESVYGEKRVS R G K T K N 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 9 1 959.52876 P22087 P22087 101 109 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2 3.5544E-06 154.85 By matching By MS/MS 5 0.816 1 1 1 2 1 8668000 3473800 5194200 0 4621 627 4820 19600;19601;19602 16513 16513 1 2727300 1798000 0 GKEDLQTNSFPVLLTQGLESNDFEMLNK IEERLGAMDIDTHKKGKEDLQTNSFPVLLT LTQGLESNDFEMLNKVLQTRNVNLIKKTVL K G K N K V 0 0 3 2 0 2 3 2 0 0 5 2 1 2 1 2 2 0 0 1 0 0 28 1 3166.5492 Q15061 Q15061 453 480 WDR43 WD repeat-containing protein 43 yes yes 3 7.1182E-32 122.78 By MS/MS 3 0 1 1 16267000 0 0 16267000 4622 1343 4821 19603 16514 16514 1 0 0 3155000 GKFEDMAK KKCSERWKTMSAKEKGKFEDMAKADKARYE TMSAKEKGKFEDMAKADKARYEREMKTYIP K G K A K A 1 0 0 1 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 8 1 924.4375 P09429;B2RPK0 P09429 58 65 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 no no 2 0.012297 113.71 By matching By MS/MS 6.33 0.471 2 1 1 2 103840000 0 14756000 89087000 4623 484 4822 19604;19605;19606 16515;16516 16515 2 0 5107900 14299000 GKFGHEFLEFEFRPDGK AVASDFYLRYYVGHKGKFGHEFLEFEFRPD FGHEFLEFEFRPDGKLRYANNSNYKNDVMI K G K G K L 0 1 0 1 0 0 3 3 1 0 1 2 0 4 1 0 0 0 0 0 0 0 17 2 2038.9901 P61326;Q96A72 Q96A72 17 33 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 4 0.0031576 66.068 By MS/MS 8 0 1 1 9873400 0 0 9873400 4624 992;1748 4823 19607 16517 16517 1 0 0 1513700 GKGASGSFVVVQK ALKRELNRGVIKQVKGKGASGSFVVVQKSR VKGKGASGSFVVVQKSRKTPQKSRNRKNRS K G K Q K S 1 0 0 0 0 1 0 3 0 0 0 2 0 1 0 2 0 0 0 3 0 0 13 1 1262.6983 Q5SSJ5 Q5SSJ5 221 233 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.045998 97.779 By MS/MS 3 0 1 1 8291400 0 0 8291400 4625 1445 4824 19608 16518 16518 1 0 0 1608100 GKLDDYQER LGVIDKKLRNLEKKKGKLDDYQERMNKGER NLEKKKGKLDDYQERMNKGERLNQDQLDAV K G K E R M 0 1 0 2 0 1 1 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 1 1122.5306 Q14444 Q14444 73 81 CAPRIN1 Caprin-1 yes yes 2 0.026762 99.802 By MS/MS By matching 3 0.816 1 1 1 2 1 10666000 0 10519000 146660 4626 1301 4825 19609;19610;19611 16519 16519 1 0 4646400 23955 GKLDVQFSGLTK GKPTHFTVNAKAAGKGKLDVQFSGLTKGDA AGKGKLDVQFSGLTKGDAVRDVDIIDHHDN K G K T K G 0 0 0 1 0 1 0 2 0 0 2 2 0 1 0 1 1 0 0 1 0 0 12 1 1291.7136 P21333 P21333 905 916 FLNA Filamin-A yes yes 2;3 0.010016 114.86 By MS/MS By MS/MS 1 0 2 1 1 43615000 0 11075000 32539000 4627 623 4826 19612;19613 16520;16521 16521 2 0 5413400 7011100 GKLEAIITPPPAK PNIHPELLAKKRGSKGKLEAIITPPPAKKA SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K G K A K K 2 0 0 0 0 0 1 1 0 2 1 2 0 0 3 0 1 0 0 0 0 0 13 1 1333.7969 O75367 O75367 122 134 H2AFY Core histone macro-H2A.1 yes yes 2;3 0.0020272 146.16 By MS/MS By MS/MS 4.8 1.87 1 2 2 4 4 1 1 6 9 788370000 0 118880000 669490000 4628 253 4827 19614;19615;19616;19617;19618;19619;19620;19621;19622;19623;19624;19625;19626;19627;19628 16522;16523;16524;16525;16526;16527;16528;16529;16530;16531;16532;16533;16534;16535;16536 16527 15 0 33022000 95601000 GKLEAIITPPPAKK PNIHPELLAKKRGSKGKLEAIITPPPAKKA KGKLEAIITPPPAKKAKSPSQKKPVSKKAG K G K K K A 2 0 0 0 0 0 1 1 0 2 1 3 0 0 3 0 1 0 0 0 0 0 14 2 1461.8919 O75367 O75367 122 135 H2AFY Core histone macro-H2A.1 yes yes 2 0.026865 62.088 By MS/MS 5 0 1 1 0 0 0 0 4629 253 4828 19629 16537 16537 1 0 0 0 GKNQAFIEMNTEEAANTMVNYYTSVTPVLR LGLPFGKVTNLLMLKGKNQAFIEMNTEEAA NTMVNYYTSVTPVLRGQPIYIQFSNHKELK K G K L R G 3 1 4 0 0 1 3 1 0 1 1 1 2 1 1 1 4 0 2 3 0 0 30 1 3390.6224 P26599 P26599 93 122 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 3 6.7687E-15 82.65 By MS/MS 4 0 1 1 3606100 0 3606100 0 4630 671 4829 19630 16538 16538 1 0 1196700 0 GKPLALVEEIR STPGTIILGTIPVPKGKPLALVEEIRNRKD PVPKGKPLALVEEIRNRKDVKVFNVTKENR K G K I R N 1 1 0 0 0 0 2 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1223.7238 Q9BSD7 Q9BSD7 149 159 NTPCR Cancer-related nucleoside-triphosphatase yes yes 3 0.023807 63.944 By matching By MS/MS 7 0 2 1 1 10085000 0 1553200 8531700 4631 1896 4830 19631;19632 16539 16539 1 0 891880 1513900 GKPYLTLEQLMDFINQK LRPDIDKILLEIGAKGKPYLTLEQLMDFIN PYLTLEQLMDFINQKQRDPRLNEVLYPPLR K G K Q K Q 0 0 1 1 0 2 1 1 0 1 3 2 1 1 1 0 1 0 1 0 0 0 17 1 2037.0605 Q01970 Q01970 237 253 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 3 0.0085504 55.851 By matching By MS/MS 1.5 0.5 1 1 1 1 1685500 0 520000 1165500 4632 1142 4831 19633;19634 16540 16540 1 0 254170 263370 GKVEIDQQQLTQQQLNGN DERDEEDEERESKSRGKVEIDQQQLTQQQL EIDQQQLTQQQLNGN_______________ R G K G N - 0 0 2 1 0 6 1 2 0 1 2 1 0 0 0 0 1 0 0 1 0 0 18 1 2040.0236 Q8IWS0 Q8IWS0 348 365 PHF6 PHD finger protein 6 yes yes 2 2.1678E-15 174.73 By MS/MS By MS/MS 5 0 2 1 1 12237000 0 3399700 8837600 4633 1576 4832 19635;19636 16541;16542 16541 2 0 876340 1232700 GKVEYLLK EEYVVEKVLDRRVVKGKVEYLLKWKGFSDE LDRRVVKGKVEYLLKWKGFSDEDNTWEPEE K G K L K W 0 0 0 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 1 1 0 0 8 1 948.56442 P83916 P83916 34 41 CBX1 Chromobox protein homolog 1 yes yes 2 0.010231 117.4 By matching By MS/MS By MS/MS 5.5 1.26 2 1 1 2 1 4 1 172540000 2521700 76203000 93814000 4634 1109 4833 19637;19638;19639;19640;19641;19642 16543;16544 16543 2 1967400 41986000 16647000 GKVKVGVNGFGR ______________________________ ______________________________ M G K G R I 0 1 1 0 0 0 0 4 0 0 0 2 0 1 0 0 0 0 0 3 0 0 12 2 1216.704 P04406 P04406 2 13 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 3 0.053153 54.471 By MS/MS 9.5 0.5 1 1 2 2116800 2116800 0 0 4635 415 4834 19643;19644 16545 16545 1 2128800 0 0 GKVPMVVLQDILAVRPPQIK KEQDSWSEAGGILFKGKVPMVVLQDILAVR VVLQDILAVRPPQIKSLPATPQGKNMTPES K G K I K S 1 1 0 1 0 2 0 1 0 2 2 2 1 0 3 0 0 0 0 4 0 0 20 2 2200.313 Q13111 Q13111 235 254 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3;4 1.5033E-05 85.808 By MS/MS By MS/MS 2 0 3 1 2 13946000 0 5102300 8843800 4636 1220 4835 19645;19646;19647 16546;16547;16548 16548 3 0 2297700 1998500 GKWEKPFEMK DPNTVFALVNYISFKGKWEKPFEMKHTTER YISFKGKWEKPFEMKHTTERDFHVDEQTTV K G K M K H 0 0 0 0 0 0 2 1 0 0 0 3 1 1 1 0 0 1 0 0 0 0 10 2 1278.6431 CON__P34955 CON__P34955 214 223 yes yes 2;3 0.0016236 145.99 By MS/MS By MS/MS 5 1.95 3 3 1 1 2 5 5 180190000 122680000 0 57504000 + 4637 64 4836 19648;19649;19650;19651;19652;19653;19654;19655;19656;19657 16549;16550;16551;16552 16549 4 100850000 0 9702700 GLAEDIENEVVQITWNR NKKNKITMIAEPLEKGLAEDIENEVVQITW AEDIENEVVQITWNRKKLGEFFQTKYDWDL K G L N R K 1 1 2 1 0 1 3 1 0 2 1 0 0 0 0 0 1 1 0 2 0 0 17 0 1984.9854 Q15029 Q15029 695 711 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 6.7023E-257 333.03 By MS/MS 1.67 0.471 1 2 3 25574000 0 0 25574000 4638 1335 4837 19658;19659;19660 16553;16554 16554 2 0 0 5772800 GLAFLDELR MANSTGKAPPDERRKGLAFLDELRQFHHSR PDERRKGLAFLDELRQFHHSRGSPFKKIPA K G L L R Q 1 1 0 1 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1032.5604 Q68CP9 Q68CP9 16 24 ARID2 AT-rich interactive domain-containing protein 2 yes yes 2 0.0013726 108.46 By MS/MS 1 0 1 1 2366500 0 0 2366500 4639 1467 4838 19661 16555 16555 1 0 0 509890 GLAGAVSELLR EDEGGSGRPLLQAAKGLAGAVSELLRSAQP QAAKGLAGAVSELLRSAQPASAEPRQNLLQ K G L L R S 2 1 0 0 0 0 1 2 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1084.6241 Q9Y490 Q9Y490 614 624 TLN1 Talin-1 yes yes 2 0.059188 71.614 By MS/MS 1 0 1 1 54171000 0 54171000 0 4640 2284 4839 19662 16556 16556 1 0 26478000 0 GLALALFGGEPK ASIAPSIYGHEDIKRGLALALFGGEPKNPG IKRGLALALFGGEPKNPGGKHKVRGDINVL R G L P K N 2 0 0 0 0 0 1 3 0 0 3 1 0 1 1 0 0 0 0 0 0 0 12 0 1171.6601 P49736 P49736 494 505 MCM2 DNA replication licensing factor MCM2 yes yes 2 0.032751 77.662 By MS/MS 2 0 1 1 3935800 0 3935800 0 4641 864 4840 19663 16557 16557 1 0 1772400 0 GLALLNGEYLLAAQLGK GANLLTYRGGQAGPRGLALLNGEYLLAAQL ALLNGEYLLAAQLGKNYISAWELQRKDQLQ R G L G K N 3 0 1 0 0 1 1 3 0 0 6 1 0 0 0 0 0 0 1 0 0 0 17 0 1742.9931 Q9BV38 Q9BV38 43 59 WDR18 WD repeat-containing protein 18 yes yes 2 1.1016E-05 110.66 By MS/MS 5 0 1 1 2526400 0 2526400 0 4642 1910 4841 19664 16558 16558 1 0 651230 0 GLAPDLPEDLYHLIK RFVTGNKILRILKSKGLAPDLPEDLYHLIK GLAPDLPEDLYHLIKKAVAVRKHLERNRKD K G L I K K 1 0 0 2 0 0 1 1 1 1 4 1 0 0 2 0 0 0 1 0 0 0 15 0 1692.9087 P62277 P62277 79 93 RPS13 40S ribosomal protein S13 yes yes 2;3 0.00043882 138.76 By MS/MS By MS/MS 7.33 1.15 1 1 2 4 1 2 7 604950000 0 14309000 590640000 4643 1016 4842 19665;19666;19667;19668;19669;19670;19671;19672;19673 16559;16560;16561;16562;16563;16564;16565 16565 7 0 6510000 92540000 GLAPDLPEDLYHLIKK RFVTGNKILRILKSKGLAPDLPEDLYHLIK LAPDLPEDLYHLIKKAVAVRKHLERNRKDK K G L K K A 1 0 0 2 0 0 1 1 1 1 4 2 0 0 2 0 0 0 1 0 0 0 16 1 1821.0036 P62277 P62277 79 94 RPS13 40S ribosomal protein S13 yes yes 3;4 0.0044968 62.377 By matching By MS/MS 7.25 0.829 1 1 2 1 3 20348000 0 278150 20070000 4644 1016 4843 19674;19675;19676;19677 16566;16567 16566 2 0 96284 3095700 GLAVFISDIR ______________________________ GDGMRGLAVFISDIRNCKSKEAEIKRINKE R G L I R N 1 1 0 1 0 0 0 1 0 2 1 0 0 1 0 1 0 0 0 1 0 0 10 0 1089.6182 O94973;O95782 O94973 12 21 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 4.2498E-05 150.4 By MS/MS 2 0 1 1 14323000 0 0 14323000 4645 306;339 4844 19678 16568 16568 1 0 0 3236700 GLAYPARPAQLR YGDIRPSAASWVGSRGLAYPARPAQLRRRA GSRGLAYPARPAQLRRRASVRGSSEEDEDA R G L L R R 3 2 0 0 0 1 0 1 0 0 2 0 0 0 2 0 0 0 1 0 0 0 12 1 1311.7412 Q8NC56 Q8NC56 119 130 LEMD2 LEM domain-containing protein 2 yes yes 3 0.012573 71.03 By MS/MS 4 0 1 1 0 0 0 0 4646 1631 4845 19679 16569 16569 1 0 0 0 GLCAIAQAESLR PEGSVELYAEKVATRGLCAIAQAESLRYKL ATRGLCAIAQAESLRYKLLGGLAVRRACYG R G L L R Y 3 1 0 0 1 1 1 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1287.6605 P23396 P23396 95 106 RPS3 40S ribosomal protein S3 yes yes 2 4.2504E-12 179.51 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 132050000 0 22828000 109220000 4647 641 4846 19680;19681;19682 16570;16571;16572 16572 3 0 9136000 16341000 GLDFALLQK SKFLGGDMEHTHLVKGLDFALLQKVRAEIA HTHLVKGLDFALLQKVRAEIASKEKEEEEL K G L Q K V 1 0 0 1 0 1 0 1 0 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1003.5702 Q13123 Q13123 165 173 IK Protein Red yes yes 2 4.4789E-11 129.4 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 21921000 0 2728900 19192000 4648 1222 4847 19683;19684;19685;19686;19687;19688 16573;16574;16575;16576 16574 4 0 905610 3799800 GLDGAKKAVGGLGK QAPKPRKQRSSLLEKGLDGAKKAVGGLGKL KGLDGAKKAVGGLGKLGKDAVEDLESVGKG K G L G K L 2 0 0 1 0 0 0 5 0 0 2 3 0 0 0 0 0 0 0 1 0 0 14 2 1269.7405 P81605 P81605 69 82 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 3 0.0011931 92.457 By MS/MS By matching 5.5 3.2 1 1 1 1 1 1 2 7 1 43832000 43712000 0 119930 4649 1094 4848 19689;19690;19691;19692;19693;19694;19695;19696 16577;16578;16579 16577 3 57020000 0 262300 GLDIEGVK DEQIDILVATDVAARGLDIEGVKTVINFTM ATDVAARGLDIEGVKTVINFTMPNTIKHYV R G L V K T 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 Q96GQ7 Q96GQ7 526 533 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.0085273 95.541 By MS/MS By matching 2.5 0.5 1 1 1 1 14803000 0 7291400 7511900 4650 1793 4849 19697;19698 16580 16580 1 0 3283400 1456900 GLDIPEVDLVIQSSPPKDVESYIHR NGSFGVLVATNVAARGLDIPEVDLVIQSSP IQSSPPKDVESYIHRSGRTGRAGRTGVCIC R G L H R S 0 1 0 3 0 1 2 1 1 3 2 1 0 0 3 3 0 0 1 3 0 0 25 1 2805.4549 Q9NR30 Q9NR30 500 524 DDX21 Nucleolar RNA helicase 2 yes yes 4 8.3044E-20 114.2 By MS/MS 2 0 1 1 9670500 0 0 9670500 4651 2038 4850 19699 16581 16581 1 0 0 2185400 GLDIPEVDWIVQYDPPDDPKEYIHR NADSGTLLCTDVAARGLDIPEVDWIVQYDP VQYDPPDDPKEYIHRVGRTARGLNGRGHAL R G L H R V 0 1 0 5 0 1 2 1 1 3 1 1 0 0 4 0 0 1 2 2 0 0 25 1 3008.4556 Q9NVP1 Q9NVP1 488 512 DDX18 ATP-dependent RNA helicase DDX18 yes yes 4 0.016847 37.228 By MS/MS 2.5 0.5 1 1 2 6192000 0 0 6192000 4652 2069 4851 19700;19701 16582 16582 0 0 0 1288100 GLDIPLLDNVINYSFPAK LGKCSTLIVTDLAARGLDIPLLDNVINYSF IPLLDNVINYSFPAKGKLFLHRVGRVARAG R G L A K G 1 0 2 2 0 0 0 1 0 2 3 1 0 1 2 1 0 0 1 1 0 0 18 0 1988.0619 Q8TDD1 Q8TDD1 401 418 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.00045553 95.651 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 8844600 0 2479200 6365400 4653 1661 4852 19702;19703;19704 16583;16584;16585 16584 3 0 1116400 1402400 GLDIPTVQVVINHNTPGLPK SSIYRILIATDVASRGLDIPTVQVVINHNT TVQVVINHNTPGLPKIYIHRVGRTARAGRQ R G L P K I 0 0 2 1 0 1 0 2 1 2 2 1 0 0 3 0 2 0 0 3 0 0 20 0 2111.1739 Q9Y6V7 Q9Y6V7 311 330 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 3 0.0029377 55.007 By MS/MS 4.5 0.5 1 1 2 5340900 0 5340900 0 4654 2317 4853 19705;19706 16586 16586 1 0 1643700 0 GLDISHISQR QETADVKASVLLGSRGLDISHISQRLESLS LLGSRGLDISHISQRLESLSAATTFEPLEP R G L Q R L 0 1 0 1 0 1 0 1 1 2 1 0 0 0 0 2 0 0 0 0 0 0 10 0 1124.5938 Q8N1F7 Q8N1F7 68 77 NUP93 Nuclear pore complex protein Nup93 yes yes 2 0.0010717 110.41 By MS/MS 2.5 0.5 1 1 2 15002000 0 0 15002000 4655 1599 4854 19707;19708 16587 16587 1 0 0 3056700 GLDISNVK SGKSPILVATAVAARGLDISNVKHVINFDL ATAVAARGLDISNVKHVINFDLPSDIEEYV R G L V K H 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 844.46543 O00571 O00571 504 511 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 0.0095763 94.262 By MS/MS By matching 4.67 1.7 1 1 1 2 1 95180000 0 89771000 5408500 4656 131 4855 19709;19710;19711 16588 16588 1 0 36261000 959710 GLDNTEFQGK FVHMERAEDAVEAIRGLDNTEFQGKRMHVQ VEAIRGLDNTEFQGKRMHVQLSTSRLRTAP R G L G K R 0 0 1 1 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 0 0 10 0 1107.5197 Q9BWF3;Q9BQ04 Q9BWF3 130 139 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.00057472 116.25 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 29033000 0 6391700 22641000 4657 1924 4856 19712;19713;19714 16589;16590 16590 2 0 2058900 3158000 GLDPVEILQER LHQKQSRITPIQKPRGLDPVEILQEREYRL QKPRGLDPVEILQEREYRLQARIAHRIQEL R G L E R E 0 1 0 1 0 1 2 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1267.6772 P51532 P51532 360 370 SMARCA4 Transcription activator BRG1 yes yes 2 9.6742E-05 141.25 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 16733000 0 3927600 12806000 4658 894 4857 19715;19716;19717 16591;16592 16592 2 0 1919800 2784400 GLDTVVALLADVVLQPR TSRDTTMYAVSADSKGLDTVVALLADVVLQ DTVVALLADVVLQPRLTDEEVEMTRMAVQF K G L P R L 2 1 0 2 0 1 0 1 0 0 4 0 0 0 1 0 1 0 0 4 0 0 17 0 1778.0302 Q10713 Q10713 159 175 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2;3 9.0705E-06 119.39 By MS/MS 3.67 0.471 1 2 3 1254900 0 0 1254900 4659 1195 4858 19718;19719;19720 16593;16594 16594 2 0 0 207070 GLDVDSLVIEHIQVNK LLHMLKNAESNAELKGLDVDSLVIEHIQVN LDVDSLVIEHIQVNKAPKMRRRTYRAHGRI K G L N K A 0 0 1 2 0 1 1 1 1 2 2 1 0 0 0 1 0 0 0 3 0 0 16 0 1777.9574 P18621 P18621 106 121 RPL17 60S ribosomal protein L17 yes yes 2;3 5.1742E-26 197.07 By MS/MS By MS/MS 6.89 0.737 3 4 2 3 6 142350000 0 6857000 135500000 4660 597 4859 19721;19722;19723;19724;19725;19726;19727;19728;19729 16595;16596;16597;16598;16599;16600;16601 16599 7 0 3179100 23049000 GLDVEDVK HGKAPILIATDVASRGLDVEDVKFVINYDY ATDVASRGLDVEDVKFVINYDYPNSSEDYI R G L V K F 0 0 0 2 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 873.44436 Q92841;P17844 P17844 404 411 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.01344 89.55 By matching By MS/MS By MS/MS 2.5 0.866 1 3 1 2 1 180050000 16133000 46558000 117360000 4661 588;1725 4860 19730;19731;19732;19733 16602;16603;16604 16603 3 18613000 20175000 22762000 GLEAALVYVENAHVAGK IKKFVTDSNAVVQLKGLEAALVYVENAHVA EAALVYVENAHVAGKTTGEVVSGVVSKVFN K G L G K T 4 0 1 0 0 0 2 2 1 0 2 1 0 0 0 0 0 0 1 3 0 0 17 0 1739.9206 Q14008 Q14008 68 84 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 2.6931E-09 170.04 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 90751000 0 2902500 87849000 4662 1279 4861 19734;19735;19736;19737;19738 16605;16606;16607;16608;16609 16608 5 0 1418700 19204000 GLEAAQIK LTEKEGKDQELAKLRGLEAAQIKELEELRQ QELAKLRGLEAAQIKELEELRQTVKQLKEQ R G L I K E 2 0 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 828.47052 Q14980 Q14980 1071 1078 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.027302 78.616 By MS/MS By matching By matching 1.33 0.471 2 1 1 1 1 12573000 3765900 7756900 1049700 4663 1327 4862 19739;19740;19741 16610 16610 1 3765900 3791500 237210 GLEAEVLR EEIFSQNRESEKRLKGLEAEVLRLQEELAA ESEKRLKGLEAEVLRLQEELAASDRARRQA K G L L R L 1 1 0 0 0 0 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 885.49198 Q7Z406 Q7Z406 1701 1708 MYH14 Myosin-14 yes yes 2 0.0095763 94.262 By MS/MS 1 0 1 1 6587900 0 6587900 0 4664 1531 4863 19742 16611 16611 1 0 3220100 0 GLEALLADPQQK QGTEPLVLFKEGAVRGLEALLADPQQKIET AVRGLEALLADPQQKIETVISDEEVIKWTK R G L Q K I 2 0 0 1 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 0 0 0 12 0 1281.6929 Q9H8H0 Q9H8H0 131 142 NOL11 Nucleolar protein 11 yes yes 2 0.0088545 96.143 By MS/MS 3 0 1 1 14591000 0 0 14591000 4665 1995 4864 19743 16612 16612 1 0 0 2830000 GLEHVTVDDLVAEITPK KDQLKAHCKEVIKEKGLEHVTVDDLVAEIT EHVTVDDLVAEITPKGRALVPDSVKKELLQ K G L P K G 1 0 0 2 0 0 2 1 1 1 2 1 0 0 1 0 2 0 0 3 0 0 17 0 1834.9676 Q9NPA8 Q9NPA8 58 74 ENY2 Transcription and mRNA export factor ENY2 yes yes 3 0.0040354 61.165 By MS/MS 9 0 1 1 5031600 0 0 5031600 4666 2024 4865 19744 16613 16613 1 0 0 1607300 GLEISGTFTHR YVAPKAVWLPAVKAKGLEISGTFTHRQGHI VKAKGLEISGTFTHRQGHIYMEMNFTNKAL K G L H R Q 0 1 0 0 0 0 1 2 1 1 1 0 0 1 0 1 2 0 0 0 0 0 11 0 1216.62 P63010 P63010 722 732 AP2B1 AP-2 complex subunit beta yes yes 3 0.00091596 101.3 By MS/MS By MS/MS 2 0 2 1 1 8727900 0 2605800 6122100 4667 1057 4866 19745;19746 16614;16615 16615 2 0 1173400 1383500 GLEISGTFTR YVAPKAVWLPAMKAKGLEISGTFTRQVGSI AMKAKGLEISGTFTRQVGSISMDLQLTNKA K G L T R Q 0 1 0 0 0 0 1 2 0 1 1 0 0 1 0 1 2 0 0 0 0 0 10 0 1079.5611 Q10567 Q10567 731 740 AP1B1 AP-1 complex subunit beta-1 yes yes 2 0.0083355 90.709 By MS/MS 2 0 1 1 3319300 0 0 3319300 4668 1193 4867 19747 16616 16616 1 0 0 750100 GLELLAASEAPR ______________________________ LRRGLELLAASEAPRDPPGQAKPRGAPVKR R G L P R D 3 1 0 0 0 0 2 1 0 0 3 0 0 0 1 1 0 0 0 0 0 0 12 0 1225.6667 Q86WX3 Q86WX3 9 20 RPS19BP1 Active regulator of SIRT1 yes yes 2 0.012667 90.108 By MS/MS By MS/MS 8.67 0.943 2 1 2 1 13476000 0 6226100 7249800 4669 1557 4868 19748;19749;19750 16617;16618 16617 2 0 6816700 1111500 GLESDVAELR HRSEVELAAALSDKRGLESDVAELRAQLAK LSDKRGLESDVAELRAQLAKAEDGHAVAKK R G L L R A 1 1 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1087.551 Q03252 Q03252 172 181 LMNB2 Lamin-B2 yes yes 2 0.00064155 131.06 By MS/MS 3 0 1 1 18977000 0 18977000 0 4670 1156 4869 19751 16619 16619 1 0 8089700 0 GLESLPPLRPQQNPVLPVAGER LSEEEIAMAVTAWEKGLESLPPLRPQQNPV LRPQQNPVLPVAGERNVLITSALPYVNNVP K G L E R N 1 2 1 0 0 2 2 2 0 0 4 0 0 0 5 1 0 0 0 2 0 0 22 1 2366.307 P56192 P56192 243 264 MARS Methionine--tRNA ligase, cytoplasmic yes yes 3 0.053529 50.752 By MS/MS 2.5 0.5 1 1 2 11975000 0 11975000 0 4671 949 4870 19752;19753 16620 16620 0 0 5348400 0 GLEVTITAR IVEPTEKFYYIYNEKGLEVTITARFLYGKK YIYNEKGLEVTITARFLYGKKVEGTAFVIF K G L A R F 1 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 9 0 958.54475 P01024 P01024 250 258 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.002059 105.57 By MS/MS By matching 9.67 0.471 1 2 2 1 9120900 7663100 0 1457800 4672 371 4871 19754;19755;19756 16621 16621 1 6905300 0 3188300 GLEWVANIK FSSYWMSWVRQAPGKGLEWVANIKQDGSEK RQAPGKGLEWVANIKQDGSEKYYVDSVKGR K G L I K Q 1 0 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 9 0 1028.5655 P01780 P01780 63 71 Ig heavy chain V-III region JON yes yes 2 0.0036998 99.375 By MS/MS 6.43 2.44 1 1 1 1 1 1 1 7 72256000 72256000 0 0 4673 378 4872 19757;19758;19759;19760;19761;19762;19763 16622 16622 1 58551000 0 0 GLEWVGR FSNAWMSWVRQAPGKGLEWVGRIKSKTDGG WVRQAPGKGLEWVGRIKSKTDGGTTDYAAP K G L G R I 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 815.42899 A0A0B4J1V0;A0A0B4J1Y9;A0A0B4J1V6 A0A0B4J1V0 63 69 IGHV3-15;IGHV3-72;IGHV3-73 yes no 2 0.03899 84.359 By MS/MS 9.5 0.5 1 1 2 5996900 5996900 0 0 4674 3 4873 19764;19765 16623 16623 1 4421900 0 0 GLFIIDDK QDYGVLKADEGISFRGLFIIDDKGILRQIT DEGISFRGLFIIDDKGILRQITVNDLPVGR R G L D K G 0 0 0 2 0 0 0 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 919.50148 Q06830;Q13162 Q06830 129 136 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 2 0.0041064 102.77 By matching By matching By MS/MS 8.5 1.26 2 1 1 2 2 1 3 84011000 8639400 1213700 74158000 4675 1173;1227 4874 19766;19767;19768;19769;19770;19771 16624;16625;16626 16625 3 14604000 6140500 18802000 GLFIIDGK EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT DEGIAYRGLFIIDGKGVLRQITVNDLPVGR R G L G K G 0 0 0 1 0 0 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 861.496 P32119 P32119 128 135 PRDX2 Peroxiredoxin-2 yes yes 2 0.011508 91.906 By MS/MS By MS/MS By MS/MS 6.08 2.81 1 1 1 1 1 1 3 1 1 2 10 1 2 58480000 35399000 4104000 18977000 4676 727 4875 19772;19773;19774;19775;19776;19777;19778;19779;19780;19781;19782;19783;19784 16627;16628;16629 16627 3 41003000 2356600 6438800 GLFIIDPNGVIK RDYGVLLEGSGLALRGLFIIDPNGVIKHLS ALRGLFIIDPNGVIKHLSVNDLPVGRSVEE R G L I K H 0 0 1 1 0 0 0 2 0 3 1 1 0 1 1 0 0 0 0 1 0 0 12 0 1284.7442 P30048 P30048 185 196 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.0055055 102.07 By MS/MS By MS/MS By MS/MS 6 1.15 1 1 1 3 1 1 4 69441000 2413700 11426000 55602000 4677 707 4876 19785;19786;19787;19788;19789;19790 16630;16631;16632 16631 3 5202000 6560800 9458700 GLFLISMGMTDPEMVEVHASSK SLKKLIVREVAHEEKGLFLISMGMTDPEMV GMTDPEMVEVHASSKEERNSWIQIIQDTIN K G L S K E 1 0 0 1 0 0 2 2 1 1 2 1 3 1 1 3 1 0 0 2 0 0 22 0 2378.132 Q12802 Q12802 2297 2318 AKAP13 A-kinase anchor protein 13 yes yes 4 0.068805 16.506 By MS/MS 1.5 0.5 1 1 2 7732700 0 0 7732700 4678 1201 4877 19791;19792 16633 16633 0 0 0 1701700 GLFSFFQGR PVSSHCLRAAAFYVRGLFSFFQGRYNEAKR AAFYVRGLFSFFQGRYNEAKRFLRETLKMS R G L G R Y 0 1 0 0 0 1 0 2 0 0 1 0 0 3 0 1 0 0 0 0 0 0 9 0 1057.5345 Q9Y6X3 Q9Y6X3 466 474 MAU2 MAU2 chromatid cohesion factor homolog yes yes 2 0.00040299 132.09 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 6294600 0 811090 5483500 4679 2318 4878 19793;19794;19795 16634;16635;16636 16635 3 0 269170 956590 GLFYFDNSFRPVPLEQTYVGITEK NYEDVATFLRVDPAKGLFYFDNSFRPVPLE RPVPLEQTYVGITEKKAIKRFQIMNEIVYE K G L E K K 0 1 1 1 0 1 2 2 0 1 2 1 0 3 2 1 2 0 2 2 0 0 24 1 2819.417 O75643 O75643 672 695 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 4.6844E-05 69.152 By matching By MS/MS 1.33 0.471 2 1 1 2 30361000 0 958380 29403000 4680 277 4879 19796;19797;19798 16637;16638 16637 2 0 468440 6346000 GLGATLLR AWELLRTQGLAGLYRGLGATLLRDIPFSII GLAGLYRGLGATLLRDIPFSIIYFPLFANL R G L L R D 1 1 0 0 0 0 0 2 0 0 3 0 0 0 0 0 1 0 0 0 0 0 8 0 799.49159 Q9H1K4;Q9H936 Q9H1K4 185 192 SLC25A18;SLC25A22 Mitochondrial glutamate carrier 2;Mitochondrial glutamate carrier 1 yes no 2 8.8057E-06 153.38 By matching By MS/MS 6 0 2 1 1 6634700 0 1566500 5068100 4681 1970 4880 19799;19800 16639 16639 1 0 542280 758250 GLGHPPSSPLLK AVNKAIKSPPGFSAKGLGHPPSSPLLKKTP SAKGLGHPPSSPLLKKTPLALAGSPTPKNP K G L L K K 0 0 0 0 0 0 0 2 1 0 3 1 0 0 3 2 0 0 0 0 0 0 12 0 1201.6819 O95785 O95785 976 987 WIZ Protein Wiz yes yes 3 0.06985 37.236 By matching By MS/MS 1.33 0.471 2 1 1 2 17228000 1350300 0 15878000 4682 340 4881 19801;19802;19803 16640 16640 1 1350300 0 3525600 GLGHQVATDALVAMEK DHKGQVCVMIHSGSRGLGHQVATDALVAME LGHQVATDALVAMEKAMKRDKIIVNDRQLA R G L E K A 3 0 0 1 0 1 1 2 1 0 2 1 1 0 0 0 1 0 0 2 0 0 16 0 1638.8399 Q9Y3I0 Q9Y3I0 264 279 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 1.975E-12 175.88 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 104420000 0 17830000 86587000 4683 2276 4882;4883 19804;19805;19806;19807;19808 16641;16642;16643;16644 16644 734 4 0 6002300 14142000 GLGILSLK AERKGAAYGLAGLVKGLGILSLKQQEMMAA GLAGLVKGLGILSLKQQEMMAALTDAIQDK K G L L K Q 0 0 0 0 0 0 0 2 0 1 3 1 0 0 0 1 0 0 0 0 0 0 8 0 799.51674 Q92616 Q92616 1407 1414 GCN1L1 Translational activator GCN1 yes yes 2 0.061956 69.998 By MS/MS 1 0 1 1 1888500 0 1888500 0 4684 1712 4884 19809 16645 16645 1 0 923050 0 GLGLDDALEPR DVTRIERIGAHSHIRGLGLDDALEPRQASQ SHIRGLGLDDALEPRQASQGMVGQLAARRA R G L P R Q 1 1 0 2 0 0 1 2 0 0 3 0 0 0 1 0 0 0 0 0 0 0 11 0 1154.5932 Q9Y230 Q9Y230 30 40 RUVBL2 RuvB-like 2 yes yes 2 1.1372E-05 151.44 By MS/MS 4.5 0.5 1 1 2 33188000 0 0 33188000 4685 2228 4885 19810;19811 16646;16647 16646 2 0 0 5141400 GLGLDESGLAK STTKTQRIASHSHVKGLGLDESGLAKQAAS SHVKGLGLDESGLAKQAASGLVGQENAREA K G L A K Q 1 0 0 1 0 0 1 3 0 0 3 1 0 0 0 1 0 0 0 0 0 0 11 0 1058.5608 Q9Y265 Q9Y265 23 33 RUVBL1 RuvB-like 1 yes yes 2 0.00032718 122.13 By MS/MS 3.67 1.25 1 1 1 3 44921000 0 0 44921000 4686 2234 4886 19812;19813;19814 16648 16648 1 0 0 7244600 GLGLGANLTEAQALTPTGPSR FNQVVKPRVNSLRPKGLGLGANLTEAQALT NLTEAQALTPTGPSRMPRPDEEQEKDKEDQ K G L S R M 3 1 1 0 0 1 1 4 0 0 4 0 0 0 2 1 3 0 0 0 0 0 21 0 2023.0698 Q92917 Q92917 202 222 GPKOW G patch domain and KOW motifs-containing protein yes yes 2 9.1233E-29 142.97 By MS/MS By MS/MS 4 0 2 1 1 4832700 0 2100800 2731900 4687 1730 4887 19815;19816 16649;16650 16649 1 0 697180 446200 GLGTDEDSLIEIICSR TPAQYDASELKASMKGLGTDEDSLIEIICS LGTDEDSLIEIICSRTNQELQEINRVYKEM K G L S R T 0 1 0 2 1 0 2 2 0 3 2 0 0 0 0 2 1 0 0 0 0 0 16 0 1776.8564 P07355;A6NMY6 P07355 120 135 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 4.0175E-06 160.15 By MS/MS 6 0 1 1 6680500 0 0 6680500 4688 459 4888 19817 16651 16651 1 0 0 999470 GLGTDEDTLIEILASR TPAQFDADELRAAMKGLGTDEDTLIEILAS LGTDEDTLIEILASRTNKEIRDINRVYREE K G L S R T 1 1 0 2 0 0 2 2 0 2 3 0 0 0 0 1 2 0 0 0 0 0 16 0 1701.8785 P04083 P04083 129 144 ANXA1 Annexin A1 yes yes 2 0.00066045 97.121 By MS/MS 6 0 1 1 2033200 0 2033200 0 4689 410 4889 19818 16652 16652 1 0 703830 0 GLGTDEESILTLLTSR FDERADAETLRKAMKGLGTDEESILTLLTS LGTDEESILTLLTSRSNAQRQEISAAFKTL K G L S R S 0 1 0 1 0 0 2 2 0 1 4 0 0 0 0 2 3 0 0 0 0 0 16 0 1703.8941 P08758 P08758 30 45 ANXA5 Annexin A5 yes yes 2 0.001454 92.925 By matching By MS/MS 5 0.816 1 1 1 2 1 1962900 715440 1247500 0 4690 479 4890 19819;19820;19821 16653 16653 1 565010 431830 0 GLGTGQGAVSGPPR KPEEPPPPKKPALDKGLGTGQGAVSGPPRK KGLGTGQGAVSGPPRKPPGTVAGTARGPEG K G L P R K 1 1 0 0 0 1 0 5 0 0 1 0 0 0 2 1 1 0 0 1 0 0 14 0 1252.6524 O00255 O00255 508 521 MEN1 Menin yes yes 2 5.2541E-05 159.83 By MS/MS 3.5 0.5 1 1 2 5829500 0 5829500 0 4691 113 4891 19822;19823 16654 16654 1 0 2426500 0 GLHQSIEEFR GVDLPSVEAQLGSHRGLHQSIEEFRAKIER LGSHRGLHQSIEEFRAKIERARSDEGQLSP R G L F R A 0 1 0 0 0 1 2 1 1 1 1 0 0 1 0 1 0 0 0 0 0 0 10 0 1214.6044 Q15149 Q15149 697 706 PLEC Plectin yes yes 2 0.024507 80.455 By MS/MS 1 0 1 1 12278000 0 12278000 0 4692 1348 4892 19824 16655 16655 1 0 6001200 0 GLHSQNFTQALLER LVPKPFSQFWQPLLRGLHSQNFTQALLERM RGLHSQNFTQALLERMLSELPALGISGIRP R G L E R M 1 1 1 0 0 2 1 1 1 0 3 0 0 1 0 1 1 0 0 0 0 0 14 0 1612.8322 Q9Y4W2 Q9Y4W2 388 401 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2;3 4.2043E-12 178.84 By matching By MS/MS By MS/MS 3 0.577 1 4 1 1 2 3 71251000 3903500 11947000 55400000 4693 2289 4893 19825;19826;19827;19828;19829;19830 16656;16657;16658;16659 16656 4 4503800 4763200 10981000 GLIEIISNAAEYENIPIR IELFSMSLNAKTKVRGLIEIISNAAEYENI EIISNAAEYENIPIRHHEDNLLRQLAQKVP R G L I R H 2 1 2 0 0 0 3 1 0 5 1 0 0 0 1 1 0 0 1 0 0 0 18 0 2014.0735 O75643 O75643 1844 1861 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.9113E-134 273.04 By MS/MS By MS/MS 1 0 3 1 2 32721000 0 1330200 31390000 4694 277 4894 19831;19832;19833 16660;16661;16662 16661 3 0 650170 6763600 GLIPVFALGR RFCNTVHDIVNRGGRGLIPVFALGRAQELL NRGGRGLIPVFALGRAQELLLILDEYWQNH R G L G R A 1 1 0 0 0 0 0 2 0 1 2 0 0 1 1 0 0 0 0 1 0 0 10 0 1041.6335 Q9UKF6 Q9UKF6 236 245 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 2 0.00012004 145.04 By matching By MS/MS By MS/MS 3 0 3 1 1 1 20017000 1193000 9000800 9823600 4695 2178 4895 19834;19835;19836 16663;16664 16663 2 1376400 3837000 1905300 GLIVYQLENQPSEFRR ADVIYPMAVVATAERGLIVYQLENQPSEFR LIVYQLENQPSEFRRIESPLKHQHRCVAIF R G L R R I 0 2 1 0 0 2 2 1 0 1 2 0 0 1 1 1 0 0 1 1 0 0 16 1 1948.0167 P78406 P78406 191 206 RAE1 mRNA export factor yes yes 3 7.5142E-06 117.08 By MS/MS 5.5 0.5 1 1 2 7075800 0 7075800 0 4696 1087 4896 19837;19838 16665 16665 1 0 2070500 0 GLKYELISETGGSHDKR KHGKNPVMELNEKRRGLKYELISETGGSHD KYELISETGGSHDKRFVMEVEVDGQKFQGA R G L K R F 0 1 0 1 0 0 2 3 1 1 2 2 0 0 0 2 1 0 1 0 0 0 17 2 1888.9643 Q12906;Q96SI9 Q12906 538 554 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 3;4 0.0050971 61.815 By MS/MS By matching 3.5 1.5 2 2 1 1 5 1 60748000 0 48400000 12348000 4697 1211;1834 4897 19839;19840;19841;19842;19843;19844 16666;16667 16666 2 0 21076000 2394900 GLLEESSFATLFPK DGWKEPAFSKEDNPRGLLEESSFATLFPKY RGLLEESSFATLFPKYREAYLKECWPLVQK R G L P K Y 1 0 0 0 0 0 2 1 0 0 3 1 0 2 1 2 1 0 0 0 0 0 14 0 1537.8028 Q13601 Q13601 53 66 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.0014631 106.62 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 11955000 0 3736600 8218100 4698 1261 4898 19845;19846;19847;19848 16668;16669;16670;16671;16672 16669 5 0 963180 1245100 GLLEFEHQR DLLEDRSLLLSVNARGLLEFEHQRAPRVSQ LSVNARGLLEFEHQRAPRVSQGSKDPAEGD R G L Q R A 0 1 0 0 0 1 2 1 1 0 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1127.5724 Q14697 Q14697 174 182 GANAB Neutral alpha-glucosidase AB yes yes 2 0.068307 67.169 By MS/MS By matching 2.5 0.5 1 1 1 1 5025800 0 3135700 1890100 4699 1317 4899 19849;19850 16673 16673 1 0 1412000 366580 GLLETTVQK VNRGLAAALLLCQNKGLLETTVQKVARVKA LLCQNKGLLETTVQKVARVKAPNKSLPSAV K G L Q K V 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 987.56006 O43290 O43290 649 657 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.0043007 98.299 By MS/MS By matching 2.5 0.5 1 1 1 1 7351200 0 4758800 2592400 4700 193 4900 19851;19852 16674 16674 1 0 2142900 502810 GLLKPGLNVVLEGPK ESLVTDRELQDAFSRGLLKPGLNVVLEGPK GLLKPGLNVVLEGPKKAVNDVNGLKQCLAE R G L P K K 0 0 1 0 0 0 1 3 0 0 4 2 0 0 2 0 0 0 0 2 0 0 15 1 1532.929 Q99848 Q99848 30 44 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2;3 6.5879E-05 147.35 By MS/MS By MS/MS 5.43 0.904 1 3 2 1 3 4 167160000 0 29411000 137750000 4701 1866 4901 19853;19854;19855;19856;19857;19858;19859 16675;16676;16677;16678;16679 16678 5 0 8360500 19371000 GLLLFVDEADAFLR TAMHKLFDWANTSRRGLLLFVDEADAFLRK RGLLLFVDEADAFLRKRATEKISEDLRATL R G L L R K 2 1 0 2 0 0 1 1 0 0 4 0 0 2 0 0 0 0 0 1 0 0 14 0 1577.8453 Q9NVI7 Q9NVI7 453 466 ATAD3A ATPase family AAA domain-containing protein 3A no no 2 4.3884E-34 210.27 By MS/MS 3 0 1 1 7259900 0 0 7259900 4702 2066 4902 19860 16680 16680 1 0 0 1408100 GLLNAIVIK LMKLPSDVVTAVRGKGLLNAIVIKETKDWD TAVRGKGLLNAIVIKETKDWDAWKVCLRLR K G L I K E 1 0 1 0 0 0 0 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 9 0 939.6117 P04181 P04181 375 383 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 0.0016173 107.43 By MS/MS By MS/MS By MS/MS 7 2.45 3 2 1 2 2 7741800 2009100 1886600 3846100 4703 412 4903 19861;19862;19863;19864;19865 16681;16682;16683;16684 16682 4 1609500 2011700 1873400 GLLPGLLPAPADK SLTMSSSGSLQASPRGLLPGLLPAPADKLT PRGLLPGLLPAPADKLTPKGPGQVPTATSA R G L D K L 2 0 0 1 0 0 0 2 0 0 4 1 0 0 3 0 0 0 0 0 0 0 13 0 1260.7442 Q6P2E9 Q6P2E9 679 691 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.018611 79.201 By matching By MS/MS 1.5 0.5 1 1 1 1 4675900 0 1221500 3454400 4704 1489 4904 19866;19867 16685 16685 1 0 597070 780630 GLLPQILENLLSAR RTPTGDEFVKTSVRKGLLPQILENLLSARK KGLLPQILENLLSARKRAKAELAKETDPLR K G L A R K 1 1 1 0 0 1 1 1 0 1 5 0 0 0 1 1 0 0 0 0 0 0 14 0 1535.9035 P28340 P28340 654 667 POLD1 DNA polymerase delta catalytic subunit yes yes 2 2.0858E-11 179.42 By MS/MS 2 0 1 1 7900300 0 0 7900300 4705 691 4905 19868 16686 16686 1 0 0 1785300 GLLQSGQIPGR AIANASTLAEVERLKGLLQSGQIPGRERRS ERLKGLLQSGQIPGRERRSGPTDDGEEEME K G L G R E 0 1 0 0 0 2 0 3 0 1 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1124.6302 P09661 P09661 222 232 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 1.9027E-07 160.88 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 216360000 0 121160000 95204000 4706 491 4906 19869;19870;19871;19872 16687;16688;16689 16689 3 0 67029000 16298000 GLLSAEVAR PGSRQTLSIYQALKKGLLSAEVARLLLEAQ YQALKKGLLSAEVARLLLEAQAATGFLLDP K G L A R L 2 1 0 0 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 914.51853 Q15149 Q15149 3850 3858 PLEC Plectin yes yes 2 0.00064353 133.79 By MS/MS 1.5 0.5 1 1 2 26710000 0 26710000 0 4707 1348 4907 19873;19874 16690;16691 16690 2 0 12892000 0 GLLSQPGPSSLMPVLGYDPPQLYLTQLR RHRQAVDSPAASFCRGLLSQPGPSSLMPVL VLGYDPPQLYLTQLREAFGDLALFFYDQHG R G L L R E 0 1 0 1 0 3 0 3 0 0 7 0 1 0 5 3 1 0 2 1 0 0 28 0 3039.6103 Q9H6R4 Q9H6R4 1036 1063 NOL6 Nucleolar protein 6 yes yes 3 7.1207E-15 90.974 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 9213200 0 962540 8250600 4708 1988 4908 19875;19876;19877 16692;16693;16694 16693 3 0 433440 1773400 GLLSSLDHTSIR SDLELHPPSYPWSHRGLLSSLDHTSIRRGF SHRGLLSSLDHTSIRRGFQVYKQVCASCHS R G L I R R 0 1 0 1 0 0 0 1 1 1 3 0 0 0 0 3 1 0 0 0 0 0 12 0 1297.699 P08574 P08574 100 111 CYC1 Cytochrome c1, heme protein, mitochondrial yes yes 3 0.0030659 86.911 By MS/MS 6 0 1 1 5023300 0 0 5023300 4709 472 4909 19878 16695 16695 1 0 0 751550 GLLVAGMGDVVNIWAGQGK RTLPHGAGHLAFSQRGLLVAGMGDVVNIWA AGMGDVVNIWAGQGKASPPSLEQPYLTHRL R G L G K A 2 0 1 1 0 1 0 5 0 1 2 1 1 0 0 0 0 1 0 3 0 0 19 0 1883.9928 O15213 O15213 413 431 WDR46 WD repeat-containing protein 46 yes yes 2 1.5976E-08 112.86 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 35138000 0 2109800 33028000 4710 173 4910 19879;19880;19881 16696;16697 16697 2 0 899400 6291700 GLLVDRPSETK LCADYAEQDELDYHRGLLVDRPSETKTEEQ DYHRGLLVDRPSETKTEEQGIPRPLHPPPP R G L T K T 0 1 0 1 0 0 1 1 0 0 2 1 0 0 1 1 1 0 0 1 0 0 11 1 1213.6667 Q9UKV3 Q9UKV3 1097 1107 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2;3 4.1197E-54 178.95 By MS/MS By MS/MS 2.67 1.35 4 3 4 2 2 6 9 174010000 0 34084000 139930000 4711 2184 4911 19882;19883;19884;19885;19886;19887;19888;19889;19890;19891;19892;19893;19894;19895;19896 16698;16699;16700;16701;16702;16703;16704;16705;16706;16707 16702 10 0 15439000 27537000 GLMSSGMSQLIGLK LEACAGALQNLTASKGLMSSGMSQLIGLKE KGLMSSGMSQLIGLKEKGLPQIARLLQSGN K G L L K E 0 0 0 0 0 1 0 3 0 1 3 1 2 0 0 3 0 0 0 0 0 0 14 0 1420.7418 Q13835 Q13835 580 593 PKP1 Plakophilin-1 yes yes 2 0.0055955 87.568 By MS/MS By matching 7 3.54 1 1 1 1 3 1 4958100 4168100 789940 0 4712 1270 4912 19897;19898;19899;19900 16708;16709 16708 2 3364400 3996400 0 GLMVLELPK LLSPTQHHVALIGIKGLMVLELPKRWGKNS ALIGIKGLMVLELPKRWGKNSEFEGGKSTV K G L P K R 0 0 0 0 0 0 1 1 0 0 3 1 1 0 1 0 0 0 0 1 0 0 9 0 998.58344 Q99567 Q99567 130 138 NUP88 Nuclear pore complex protein Nup88 yes yes 2 0.043929 73.26 By matching By MS/MS 3 0 2 1 1 5193900 699490 0 4494400 4713 1850 4913 19901;19902 16710 16710 1 807050 0 871700 GLMYPYIFHVLTK VAPEVLRVAEHRHKKGLMYPYIFHVLTKGE KKGLMYPYIFHVLTKGEIKIAVSIEDEANK K G L T K G 0 0 0 0 0 0 0 1 1 1 2 1 1 1 1 0 1 0 2 1 0 0 13 0 1580.8425 Q9NZB2 Q9NZB2 566 578 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 3 0.020043 58.32 By MS/MS 2.5 0.5 1 1 2 2428100 0 2428100 0 4714 2101 4914 19903;19904 16711 16711 1 0 1077300 0 GLNISAVR LPYDVTEESIKEFFRGLNISAVRLPREPSN SIKEFFRGLNISAVRLPREPSNPERLKGFG R G L V R L 1 1 1 0 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 828.48175 P23588 P23588 118 125 EIF4B Eukaryotic translation initiation factor 4B yes yes 2 0.011048 92.467 By matching By MS/MS By MS/MS 3.29 1.83 1 2 2 2 2 3 2 485570000 11159000 130610000 343800000 4715 646 4915 19905;19906;19907;19908;19909;19910;19911 16712;16713;16714 16713 3 11957000 55459000 66567000 GLNLPTSITSAAFTLR LVEVINKKLWREITKGLNLPTSITSAAFTL LNLPTSITSAAFTLRTQYMKYLYPYECEKR K G L L R T 2 1 1 0 0 0 0 1 0 1 3 0 0 1 1 2 3 0 0 0 0 0 16 0 1660.9148 Q99856 Q99856 300 315 ARID3A AT-rich interactive domain-containing protein 3A no no 2;3 3.3965E-05 128.28 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 16193000 0 7659900 8532800 4716 1867 4916 19912;19913;19914;19915 16715;16716;16717;16718 16716 3 0 2851400 1655000 GLPFQANAQDIINFFAPLKPVR ADFGTTSSLHFVHMRGLPFQANAQDIINFF AQDIINFFAPLKPVRITMEYSSSGKATGEA R G L V R I 3 1 2 1 0 2 0 1 0 2 2 1 0 3 3 0 0 0 0 1 0 0 22 1 2455.3376 Q12849 Q12849 407 428 GRSF1 G-rich sequence factor 1 yes yes 3;4 5.4775E-05 76.061 By MS/MS By MS/MS 4.17 0.687 1 3 2 2 4 37765000 0 3027800 34737000 4717 1204 4917 19916;19917;19918;19919;19920;19921 16719;16720;16721;16722;16723 16720 5 0 828690 5773800 GLPLVDDGGWNTVPISK SDKRRGGPPGPPISRGLPLVDDGGWNTVPI PLVDDGGWNTVPISKGSRPIDTSRLTKITK R G L S K G 0 0 1 2 0 0 0 3 0 1 2 1 0 0 2 1 1 1 0 2 0 0 17 0 1766.9203 Q04637 Q04637 1043 1059 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 2 6.1243E-05 100.55 By matching By MS/MS By matching 2.2 1.17 2 1 1 1 1 2 2 13509000 316420 7381700 5810700 4718 1159 4918 19922;19923;19924;19925;19926 16724;16725 16724 2 316420 3448400 1011000 GLPSPYNMSSAPGSR ITGLRLLEAASVSSKGLPSPYNMSSAPGSR GLPSPYNMSSAPGSRSGSRSGSRSGSRSGS K G L S R S 1 1 1 0 0 0 0 2 0 0 1 0 1 0 3 4 0 0 1 0 0 0 15 0 1519.7089 P15924 P15924 2812 2826 DSP Desmoplakin yes yes 2 0.00030189 120.77 By MS/MS By MS/MS 1 0 2 1 1 11429000 0 4263900 7165600 4719 572 4919 19927;19928 16726;16727 16726 2 0 2084100 1543900 GLPWSCSADEVMR MLSTEGREGFVVKVRGLPWSCSADEVMRFF VRGLPWSCSADEVMRFFSDCKIQNGTSGIR R G L M R F 1 1 0 1 1 0 1 1 0 0 1 0 1 0 1 2 0 1 0 1 0 0 13 0 1506.6595 P55795 P55795 17 29 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2 0.017209 71.524 By MS/MS 5 0 1 1 8573100 0 0 8573100 4720 944 4920 19929 16728 16728 0 0 0 1195800 GLPWSCSADEVQR MLGTEGGEGFVVKVRGLPWSCSADEVQRFF VRGLPWSCSADEVQRFFSDCKIQNGAQGIR R G L Q R F 1 1 0 1 1 1 1 1 0 0 1 0 0 0 1 2 0 1 0 1 0 0 13 0 1503.6776 P31943 P31943 17 29 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2 0.00028402 145.25 By matching By MS/MS By MS/MS 5.17 1.07 2 2 1 1 1 1 4 90223000 8491500 8906700 72825000 4721 722 4921 19930;19931;19932;19933;19934;19935 16729;16730;16731;16732 16731 4 6624900 2295900 10764000 GLPYLVNEDDVR KTRPLKAENPYLFLRGLPYLVNEDDVRVFF FLRGLPYLVNEDDVRVFFSGLCVDGVIFLK R G L V R V 0 1 1 2 0 0 1 1 0 0 2 0 0 0 1 0 0 0 1 2 0 0 12 0 1388.6936 Q8IXT5 Q8IXT5 161 172 RBM12B RNA-binding protein 12B yes yes 2 2.4919E-06 162.49 By matching By MS/MS 1.33 0.471 2 1 1 2 18080000 1798000 0 16282000 4722 1587 4922 19936;19937;19938 16733 16733 1 1798000 0 3646500 GLQAQIASSGLTVEVDAPK EELLFMKKNHEEEVKGLQAQIASSGLTVEV QIASSGLTVEVDAPKSQDLAKIMADIRAQY K G L P K S 3 0 0 1 0 2 1 2 0 1 2 1 0 0 1 2 1 0 0 2 0 0 19 0 1883 P05783 P05783 223 241 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 1.4363E-40 211.06 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 98818000 0 27804000 71014000 4723 436 4923 19939;19940;19941;19942 16734;16735;16736;16737;16738;16739 16736 6 0 7579400 10533000 GLQDVLR ARAQAALAVNISAARGLQDVLRTNLGPKGT AVNISAARGLQDVLRTNLGPKGTMKMLVSG R G L L R T 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 799.4552 P40227;Q92526 P40227 29 35 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 2 0.031251 91.584 By matching By MS/MS 10 0 2 1 1 1300300 691310 0 608960 4724 783 4924 19943;19944 16740 16740 1 1259400 0 1331900 GLQEFLDR SVPCQLLESVLQELKGLQEFLDRNSQFAGG SVLQELKGLQEFLDRNSQFAGGPLGNPNTT K G L D R N 0 1 0 1 0 1 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 976.49779 O75694 O75694 716 723 NUP155 Nuclear pore complex protein Nup155 yes yes 2 0.053232 84.097 By MS/MS 1.5 0.5 1 1 2 6911300 0 0 6911300 4725 281 4925 19945;19946 16741 16741 0 0 0 1539000 GLQEIEESLR LTSLDEGIEQVQQSRGLQEIEESLRSHGVL VQQSRGLQEIEESLRSHGVLLEVQYSSSIH R G L L R S 0 1 0 0 0 1 3 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1172.6037 Q8WV92 Q8WV92 169 178 MITD1 MIT domain-containing protein 1 yes yes 2 0.0064959 94.692 By MS/MS 7 0 1 1 4300200 0 0 4300200 4726 1680 4926 19947 16742 16742 1 0 0 763030 GLQLGQTSTATIQPSQQAQIVTR GGMVTVIPATVVTSRGLQLGQTSTATIQPS TATIQPSQQAQIVTRSVLQAAAAAAAAASM R G L T R S 2 1 0 0 0 6 0 2 0 2 2 0 0 0 1 2 4 0 0 1 0 0 23 0 2425.2925 O94842 O94842 399 421 TOX4 TOX high mobility group box family member 4 yes yes 3 8.5958E-20 124.08 By MS/MS 3 0 1 1 4794700 0 4794700 0 4727 300 4927 19948 16743 16743 1 0 2044000 0 GLQQQNSDWYLK LALFRALQSPALGLRGLQQQNSDWYLKQLL GLRGLQQQNSDWYLKQLLSDKQQKRQSGQT R G L L K Q 0 0 1 1 0 3 0 1 0 0 2 1 0 0 0 1 0 1 1 0 0 0 12 0 1478.7154 P46940 P46940 337 348 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 2.9835E-16 134.25 By MS/MS 1 0 1 1 0 0 0 0 4728 835 4928 19949 16744 16744 1 0 0 0 GLQSYYAVAHAVTER QDVDDEYGVSQALARGLQSYYAVAHAVTER GLQSYYAVAHAVTERVDKQSALMVNGVLKQ R G L E R V 3 1 0 0 0 1 1 1 1 0 1 0 0 0 0 1 1 0 2 2 0 0 15 0 1663.8318 P51532 P51532 727 741 SMARCA4 Transcription activator BRG1 yes yes 2;3 4.8328E-16 165.58 By MS/MS By MS/MS 1 0 3 1 2 26191000 0 0 26191000 4729 894 4929 19950;19951;19952 16745;16746;16747 16745 3 0 0 5643300 GLQTVHINENFAK GYTIPLDKRLAADGRGLQTVHINENFAKLA GRGLQTVHINENFAKLAEALYIADRKAREA R G L A K L 1 0 2 0 0 1 1 1 1 1 1 1 0 1 0 0 1 0 0 1 0 0 13 0 1469.7627 Q13573 Q13573 274 286 SNW1 SNW domain-containing protein 1 yes yes 2;3 3.7726E-07 164.9 By matching By MS/MS By MS/MS 3 0 5 1 2 2 88330000 4801900 42875000 40653000 4730 1259 4930 19953;19954;19955;19956;19957 16748;16749;16750;16751 16748 4 5540300 18278000 7884800 GLQVYIR EKLKDFKIRLQYFARGLQVYIRQLRLALQG IRLQYFARGLQVYIRQLRLALQGKTGEALK R G L I R Q 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 847.49159 Q9BZZ5 Q9BZZ5 383 389 API5 Apoptosis inhibitor 5 yes yes 2 0.018399 105.42 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 46295000 3229700 13616000 29449000 4731 1947 4931 19958;19959;19960;19961 16752;16753;16754 16753 3 2519800 4518700 5355400 GLSEAAGQTAQMLER EKNQSLVEENEKLSRGLSEAAGQTAQMLER GLSEAAGQTAQMLERIILTEQANEKMNAKL R G L E R I 3 1 0 0 0 2 2 2 0 0 2 0 1 0 0 1 1 0 0 0 0 0 15 0 1560.7566 O95239 O95239 405 419 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 2.0198E-58 232.17 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 38798000 0 15454000 23344000 4732 314 4932 19962;19963;19964;19965 16755;16756;16757 16757 3 0 7088200 5191200 GLSEDTTEETLK SPNARSQPSKTLFVKGLSEDTTEETLKESF FVKGLSEDTTEETLKESFDGSVRARIVTDR K G L L K E 0 0 0 1 0 0 3 1 0 0 2 1 0 0 0 1 3 0 0 0 0 0 12 0 1321.6249 P19338 P19338 578 589 NCL Nucleolin yes yes 2 1.9425E-12 182.65 By MS/MS By MS/MS 3.67 1.89 1 2 2 1 1 1 1 2 7 314650000 0 35562000 279090000 4733 604 4933 19966;19967;19968;19969;19970;19971;19972;19973;19974 16758;16759;16760;16761;16762;16763;16764 16759 7 0 15605000 53682000 GLSEDTTEETLKESFDGSVR SPNARSQPSKTLFVKGLSEDTTEETLKESF TTEETLKESFDGSVRARIVTDRETGSSKGF K G L V R A 0 1 0 2 0 0 4 2 0 0 2 1 0 1 0 3 3 0 0 1 0 0 20 1 2199.0179 P19338 P19338 578 597 NCL Nucleolin yes yes 2;3 0 349.57 By MS/MS By MS/MS 2.59 1.14 3 6 4 3 1 7 10 377520000 0 105200000 272310000 4734 604 4934 19975;19976;19977;19978;19979;19980;19981;19982;19983;19984;19985;19986;19987;19988;19989;19990;19991 16765;16766;16767;16768;16769;16770;16771;16772;16773;16774;16775;16776;16777;16778;16779;16780;16781 16769 16 0 46263000 55854000 GLSEDVSISK PHLAREFMIKTRRRKGLSEDVSISKFFDDP TRRRKGLSEDVSISKFFDDPMLLELAKQDV K G L S K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 3 0 0 0 1 0 0 10 0 1033.5292 Q15029 Q15029 942 951 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0152 85.731 By MS/MS By MS/MS 2 0 2 1 1 47357000 0 17706000 29651000 4735 1335 4935 19992;19993 16782;16783 16782 2 0 7973300 6700500 GLSLGFLEK LKNFVHAQCLELKAKGLSLGFLEKKHDEAS LELKAKGLSLGFLEKKHDEASSLSHPDLTS K G L E K K 0 0 0 0 0 0 1 2 0 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 962.54368 Q9NU22 Q9NU22 2897 2905 MDN1 Midasin yes yes 2 0.0082004 91.318 By MS/MS 1 0 1 1 1519100 0 1519100 0 4736 2056 4936 19994 16784 16784 1 0 742510 0 GLSNPNELQAAIDSNRR TQYMKYLYPYECEKRGLSNPNELQAAIDSN SNPNELQAAIDSNRREGRRQSFGGSLFAYS R G L R R E 2 2 3 1 0 1 1 1 0 1 2 0 0 0 1 2 0 0 0 0 0 0 17 1 1853.9344 Q99856 Q99856 331 347 ARID3A AT-rich interactive domain-containing protein 3A yes yes 3 0.00092037 75.463 By MS/MS 3 0 1 1 9035400 0 0 9035400 4737 1867 4937 19995 16785 16785 1 0 0 1752400 GLSPAQADSQFLENAK KELEEKVAELHKTHRGLSPAQADSQFLENA LSPAQADSQFLENAKRLSMYGVDLHHAKDS R G L A K R 3 0 1 1 0 2 1 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 16 0 1674.8213 O43491 O43491 384 399 EPB41L2 Band 4.1-like protein 2 yes yes 2 1.3861E-07 87.026 By MS/MS 2 0 1 1 0 0 0 0 4738 199 4938 19996 16786 16786 1 0 0 0 GLSQNQQIPQNSVTPR KEISEASENIYSDVRGLSQNQQIPQNSVTP LSQNQQIPQNSVTPRRGRRKKEVNQDILEN R G L P R R 0 1 2 0 0 4 0 1 0 1 1 0 0 0 2 2 1 0 0 1 0 0 16 0 1765.9071 Q8WYP5 Q8WYP5 1795 1810 AHCTF1 Protein ELYS yes yes 2 0.0016452 91.914 By MS/MS 2 0.816 1 1 1 3 11395000 0 0 11395000 4739 1702 4939 19997;19998;19999 16787 16787 1 0 0 2375700 GLSQSALPYR ______________________________ HAPGKGLSQSALPYRRSVPTWLKLTSDDVK K G L Y R R 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 10 0 1090.5771 P62277 P62277 10 19 RPS13 40S ribosomal protein S13 yes yes 2 7.3714E-11 167.24 By MS/MS By MS/MS 7.25 0.829 1 1 2 1 3 198390000 14666000 183720000 0 4740 1016 4940 20000;20001;20002;20003 16788;16789;16790;16791 16790 4 12591000 89826000 0 GLSQSALPYRR ______________________________ APGKGLSQSALPYRRSVPTWLKLTSDDVKE K G L R R S 1 2 0 0 0 1 0 1 0 0 2 0 0 0 1 2 0 0 1 0 0 0 11 1 1246.6782 P62277 P62277 10 20 RPS13 40S ribosomal protein S13 yes yes 2;3 0.00020116 134.25 By MS/MS By MS/MS 8 1.32 1 2 3 2 6 2 107590000 0 101240000 6349700 4741 1016 4941 20004;20005;20006;20007;20008;20009;20010;20011 16792;16793;16794;16795;16796;16797;16798 16794 7 0 63488000 1338900 GLSSDNKPMVNLDK AARAARFGISSVPTKGLSSDNKPMVNLDKL KGLSSDNKPMVNLDKLKERAQRFGLNVSSI K G L D K L 0 0 2 2 0 0 0 1 0 0 2 2 1 0 1 2 0 0 0 1 0 0 14 1 1516.7555 P82979 P82979 136 149 SARNP SAP domain-containing ribonucleoprotein yes yes 2;3 7.0604E-57 228.93 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 128810000 0 10226000 118590000 4742 1105 4942 20012;20013;20014;20015 16799;16800;16801 16800 3 0 3407400 17742000 GLSSHVEVVEK LSKLESVRMKVPKEKGLSSHVEVVEKEGRL PKEKGLSSHVEVVEKEGRLKARKHLKPEQP K G L E K E 0 0 0 0 0 0 2 1 1 0 1 1 0 0 0 2 0 0 0 3 0 0 11 0 1182.6245 Q96T58 Q96T58 944 954 SPEN Msx2-interacting protein yes yes 2 2.9875E-07 159.11 By MS/MS 1 0 1 1 10063000 0 0 10063000 4743 1839 4943 20016 16802 16802 1 0 0 2168200 GLSSLLYGSIPK VRQTVRSHGVLGLYRGLSSLLYGSIPKAAV LYRGLSSLLYGSIPKAAVRFGMFEFLSNHM R G L P K A 0 0 0 0 0 0 0 2 0 1 3 1 0 0 1 3 0 0 1 0 0 0 12 0 1233.6969 P53007 P53007 86 97 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 0.034736 77.14 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 56621000 0 9296100 47325000 4744 918 4944 20017;20018;20019;20020 16803;16804 16803 2 0 3526500 7190700 GLSTESILIPR NLEALEDFEKAAGARGLSTESILIPRQSET AGARGLSTESILIPRQSETCSPGSD_____ R G L P R Q 0 1 0 0 0 0 1 1 0 2 2 0 0 0 1 2 1 0 0 0 0 0 11 0 1184.6765 P31025;Q5VSP4 P31025 156 166 LCN1;LCN1P1 Lipocalin-1;Putative lipocalin 1-like protein 1 yes no 2 5.3353E-19 186.16 By MS/MS By matching By matching 6.25 2.68 1 1 1 1 2 2 2 2 2 2 11 4 1 6722800000 6713400000 7873500 1508500 4745 716 4945 20021;20022;20023;20024;20025;20026;20027;20028;20029;20030;20031;20032;20033;20034;20035;20036 16805;16806;16807;16808;16809;16810;16811;16812;16813;16814;16815;16816;16817;16818;16819;16820;16821;16822;16823;16824;16825;16826 16819 22 7670600000 3335500 3299200 GLSVDSAQEVKR SSGEGVNSVSSSIKRGLSVDSAQEVKRFRT IKRGLSVDSAQEVKRFRTATGAISAVFGRS R G L K R F 1 1 0 1 0 1 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 12 1 1287.6783 Q9Y4A5 Q9Y4A5 2049 2060 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.059535 64.82 By MS/MS 1 0 1 1 0 0 0 0 4746 2285 4946 20037 16827 16827 1 0 0 0 GLTAVSNNAGVDNFGLGLLLR IPENLIDALLKTGVKGLTAVSNNAGVDNFG NNAGVDNFGLGLLLRSKQIKRMVSSYVGEN K G L L R S 2 1 3 1 0 0 0 4 0 0 5 0 0 1 0 1 1 0 0 2 0 0 21 0 2100.1328 P55809 P55809 84 104 OXCT1 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial yes yes 3 5.4925E-08 100.77 By MS/MS 4 0 1 1 960710 0 960710 0 4747 945 4947 20038 16828 16828 1 0 318820 0 GLTDLSACK EILRGVRLHFHNLVKGLTDLSACKAQLGLG FHNLVKGLTDLSACKAQLGLGHSYSRAKVK K G L C K A 1 0 0 1 1 0 0 1 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 0 963.46953 O00567 O00567 135 143 NOP56 Nucleolar protein 56 yes yes 2 0.057219 69.423 By MS/MS 3 0 1 1 9605700 0 0 9605700 4748 130 4948 20039 16829 16829 1 0 0 1863000 GLTETGLYR IPSIVVHCVNEIEQRGLTETGLYRISGCDR NEIEQRGLTETGLYRISGCDRTVKELKEKF R G L Y R I 0 1 0 0 0 0 1 2 0 0 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1008.524 Q9H0H5 Q9H0H5 377 385 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 0.00015046 141.78 By MS/MS By matching 7.5 2.87 1 1 2 3 1 13892000 0 12091000 1800700 4749 1963 4949 20040;20041;20042;20043 16830;16831;16832 16830 3 0 9568800 3938300 GLTPSQIGVILR TSDDVKEQIYKLAKKGLTPSQIGVILRDSH AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K G L L R D 0 1 0 0 0 1 0 2 0 2 2 0 0 0 1 1 1 0 0 1 0 0 12 0 1252.7503 P62277 P62277 44 55 RPS13 40S ribosomal protein S13 yes yes 2 3.1653E-18 193.41 By MS/MS By MS/MS By MS/MS 7.9 1.37 2 2 3 1 2 1 4 5 397240000 6913600 173670000 216660000 4750 1016 4950 20044;20045;20046;20047;20048;20049;20050;20051;20052;20053 16833;16834;16835;16836;16837;16838;16839;16840;16841;16842;16843;16844;16845;16846 16844 14 5935600 92602000 43216000 GLTSVINQK ENEVFLSLPCILNARGLTSVINQKLKDDEV CILNARGLTSVINQKLKDDEVAQLKKSADT R G L Q K L 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 958.54475 P07195 P07195 300 308 LDHB L-lactate dehydrogenase B chain yes yes 2 0.00081931 111.65 By MS/MS By MS/MS By MS/MS 6 0 3 1 1 1 95328000 38441000 28444000 28442000 4751 452 4951 20054;20055;20056 16847;16848;16849 16847 3 51185000 9846400 4255300 GLTTTGNSSLNSTSNTK NCTVNTSSVATSSMKGLTTTGNSSLNSTSN TTTGNSSLNSTSNTKVSAVPTNMAAKKTST K G L T K V 0 0 3 0 0 0 0 2 0 0 2 1 0 0 0 4 5 0 0 0 0 0 17 0 1681.8119 Q96KR1 Q96KR1 468 484 ZFR Zinc finger RNA-binding protein yes yes 2 1.7196E-75 238.98 By matching By MS/MS By MS/MS 2.4 0.49 3 2 1 2 2 13006000 2285600 5710400 5009900 4752 1806 4952 20057;20058;20059;20060;20061 16850;16851;16852 16850 3 2753900 2522800 1034700 GLTVDSILQTDDATLGK KDQVTAGAMQRLRARGLTVDSILQTDDATL TVDSILQTDDATLGKLIYPVGFWRSKVKYI R G L G K L 1 0 0 3 0 1 0 2 0 1 3 1 0 0 0 1 3 0 0 1 0 0 17 0 1745.9047 P78549 P78549 158 174 NTHL1 Endonuclease III-like protein 1 yes yes 2 0.025626 59.227 By MS/MS By matching 6 0 2 1 1 18006000 0 4754000 13252000 4753 1090 4953 20062;20063 16853 16853 1 0 1645700 1982700 GLTWIAHSR LVFNPSHRSSSILPRGLTWIAHSRHGQTRD SSILPRGLTWIAHSRHGQTRDRVHDRNVKN R G L S R H 1 1 0 0 0 0 0 1 1 1 1 0 0 0 0 1 1 1 0 0 0 0 9 0 1039.5563 Q7Z3K3 Q7Z3K3 849 857 POGZ Pogo transposable element with ZNF domain yes yes 2 0.002905 102 By MS/MS 1.5 0.5 1 1 2 8445200 0 0 8445200 4754 1530 4954 20064;20065 16854 16854 1 0 0 1845000 GLVASLISVK AYKDPEKNWNRNCVKGLVASLISVKDTSAT RNCVKGLVASLISVKDTSATTALELVAGER K G L V K D 1 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 2 0 0 10 0 985.61718 O95347 O95347 524 533 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.04977 72.879 By MS/MS 2 0.816 1 1 1 3 14214000 0 0 14214000 4755 321 4955 20066;20067;20068 16855 16855 1 0 0 3135400 GLVAVITGGASGLGLATAER ______________________________ ITGGASGLGLATAERLVGQGASAVLLDLPN K G L E R L 4 1 0 0 0 0 1 5 0 1 3 0 0 0 0 1 2 0 0 2 0 0 20 0 1812.0105 Q99714 Q99714 10 29 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2;3 2.2825E-07 107.11 By matching By MS/MS 7 0 3 1 2 6551700 0 430100 6121600 4756 1859 4956 20069;20070;20071 16856;16857 16856 2 0 246960 1086200 GLVEDTLR AQLRKASDSELERQKGLVEDTLRQRRQVEE SELERQKGLVEDTLRQRRQVEEEILALKAS K G L L R Q 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 901.4869 Q15149 Q15149 2048 2055 PLEC Plectin yes yes 2 1.5721E-06 162.07 By MS/MS 1 0 1 1 26675000 0 26675000 0 4757 1348 4957 20072 16858 16858 1 0 13038000 0 GLVEPVDVVDNADGTQTVNYVPSR KAGVAPLQVKVQGPKGLVEPVDVVDNADGT DNADGTQTVNYVPSREGPYSISVLYGDEEV K G L S R E 1 1 2 3 0 1 1 2 0 0 1 0 0 0 2 1 2 0 1 6 0 0 24 0 2543.2504 P21333 P21333 1492 1515 FLNA Filamin-A yes yes 2;3 8.2701E-94 244.17 By MS/MS By MS/MS 1 0 4 2 2 57746000 0 35180000 22565000 4758 623 4958 20073;20074;20075;20076 16859;16860;16861;16862 16860 4 0 17196000 4862100 GLVGEIIKR CERTFIAIKPDGVQRGLVGEIIKRFEQKGF PDGVQRGLVGEIIKRFEQKGFRLVGLKFMQ R G L K R F 0 1 0 0 0 0 1 2 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 1 983.61277 P22392;P15531 P15531 19 27 NME2;NME1 Nucleoside diphosphate kinase B;Nucleoside diphosphate kinase A no no 2 0.010402 95.352 By MS/MS By matching 8 0 2 1 1 10701000 0 2417000 8283900 4759 631;570 4959 20077;20078 16863 16863 1 0 1099600 1270000 GLVGIEFK PVSNLRLPVEEAYKRGLVGIEFKEKLLSAE VEEAYKRGLVGIEFKEKLLSAERAVTGYND R G L F K E 0 0 0 0 0 0 1 2 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 861.496 P15924 P15924 2319 2326 DSP Desmoplakin yes yes 2 0.0033389 105.39 By MS/MS By matching By MS/MS 6.08 2.72 1 1 2 1 2 1 1 1 2 8 1 3 127850000 115700000 545770 11607000 4760 572 4960 20079;20080;20081;20082;20083;20084;20085;20086;20087;20088;20089;20090 16864;16865;16866;16867;16868;16869;16870;16871;16872;16873 16866 10 116470000 181120 10418000 GLVGNPLPSVR VNALLPTETFIPVIRGLVGNPLPSVRRKAL PVIRGLVGNPLPSVRRKALDLLNNKLQQNI R G L V R R 0 1 1 0 0 0 0 2 0 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1107.64 Q9H583 Q9H583 1606 1616 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00030578 132.84 By matching By MS/MS By MS/MS 1 0 3 1 1 1 44958000 1404600 18768000 24785000 4761 1984 4961 20091;20092;20093 16874;16875 16875 2 1404600 9173500 5340400 GLVGPELHDR PVKGERLTVDEAVRKGLVGPELHDRLLSAE EAVRKGLVGPELHDRLLSAERAVTGYRDPY K G L D R L 0 1 0 1 0 0 1 2 1 0 2 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 Q15149 Q15149 3888 3897 PLEC Plectin yes yes 2 0.015307 85.67 By MS/MS 1.5 0.5 1 1 2 6137900 0 6137900 0 4762 1348 4962 20094;20095 16876 16876 1 0 2927200 0 GLVLIAFSQYLQQCPFDEHVK EIAHRFKDLGEEHFKGLVLIAFSQYLQQCP FSQYLQQCPFDEHVKLVNELTEFAKTCVAD K G L V K L 1 0 0 1 1 3 1 1 1 1 3 1 0 2 1 1 0 0 1 2 0 0 21 0 2491.257 CON__P02769 CON__P02769 45 65 yes yes 3 0.00015372 71.742 By MS/MS 4 0 1 1 1664900 1664900 0 0 + 4763 45 4963 20096 16877 16877 1 1298900 0 0 GLVLQLIQSYQR LEDIFQQEFSTPSRKGLVLQLIQSYQRMPG SRKGLVLQLIQSYQRMPGNAMVRGFRVAYK K G L Q R M 0 1 0 0 0 3 0 1 0 1 3 0 0 0 0 1 0 0 1 1 0 0 12 0 1416.8089 Q9H4L4 Q9H4L4 358 369 SENP3 Sentrin-specific protease 3 yes yes 2 4.2504E-12 179.51 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 11316000 0 1175000 10141000 4764 1983 4964 20097;20098;20099 16878;16879 16879 2 0 500910 1879000 GLVLSGVLHK IFNGDADLSGMTGSRGLVLSGVLHKAFVEV MTGSRGLVLSGVLHKAFVEVTEEGAEAAAA R G L H K A 0 0 0 0 0 0 0 2 1 0 3 1 0 0 0 1 0 0 0 2 0 0 10 0 1021.6284 P29508 P29508 322 331 SERPINB3 Serpin B3 yes yes 2 0.002048 107.01 By MS/MS By matching 5.22 3.01 1 1 1 1 1 2 2 7 2 101980000 96276000 0 5708900 4765 700 4965 20100;20101;20102;20103;20104;20105;20106;20107;20108 16880;16881;16882;16883 16883 4 117960000 0 6743400 GLVNLQSGAPKPEENPSLNIQFK WDVGKITPQKLPSLKGLVNLQSGAPKPEEN APKPEENPSLNIQFKIQQLAISGLKVNRLD K G L F K I 1 0 3 0 0 2 2 2 0 1 3 2 0 1 3 2 0 0 0 1 0 0 23 1 2479.3071 Q9Y2T2 Q9Y2T2 356 378 AP3M1 AP-3 complex subunit mu-1 yes yes 3 9.7978E-13 110.33 By MS/MS By MS/MS 5 0 2 1 1 27586000 0 10631000 16954000 4766 2250 4966 20109;20110 16884;16885 16885 2 0 2740400 2364800 GLVPPMHLADILMK IKSYGMLVKVGEQMRGLVPPMHLADILMKN RGLVPPMHLADILMKNPEKKYHIGDEVKCR R G L M K N 1 0 0 1 0 0 0 1 1 1 3 1 2 0 2 0 0 0 0 1 0 0 14 0 1533.8411 Q14690 Q14690 478 491 PDCD11 Protein RRP5 homolog yes yes 3 0.0028729 76.588 By MS/MS By matching 2 0.816 1 1 1 1 2 7020100 0 2817400 4202600 4767 1314 4967 20111;20112;20113 16886 16886 1 0 1377100 892310 GLVSSDELAK LSDFRDLMSWINGIRGLVSSDELAKDVTGA INGIRGLVSSDELAKDVTGAEALLERHQEH R G L A K D 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1017.5342 Q13813 Q13813 1360 1369 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.016205 85.161 By MS/MS By MS/MS 1 0 2 1 1 85829000 0 44106000 41723000 4768 1268 4968 20114;20115 16887;16888 16887 2 0 21559000 8989800 GLVSTLQSATEQMAATVAGSVR AREQEAREPVLAQLRGLVSTLQSATEQMAA SATEQMAATVAGSVRAEVQHQLHVAVGSLQ R G L V R A 4 1 0 0 0 2 1 2 0 0 2 0 1 0 0 3 3 0 0 3 0 0 22 0 2176.1158 Q6P2E9 Q6P2E9 1176 1197 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 2.3892E-05 77.221 By MS/MS 2 0.816 1 1 1 3 6819500 0 0 6819500 4769 1489 4969 20116;20117;20118 16889 16889 1 0 0 1438400 GLVVPVIR YRDYIDISVAVATPRGLVVPVIRNVEAMNF VAVATPRGLVVPVIRNVEAMNFADIERTIT R G L I R N 0 1 0 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 3 0 0 8 0 851.55927 P36957 P36957 326 333 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 2 0.0012755 118.06 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 12413000 0 3324600 9088400 4770 765 4970 20119;20120;20121;20122 16890;16891;16892 16891 3 0 890820 1371600 GLVWVSR FSSYWMHWVRQAPGKGLVWVSRINSDGSST WVRQAPGKGLVWVSRINSDGSSTSYADSVK K G L S R I 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 2 0 0 7 0 815.46537 A0A0B4J1X5 A0A0B4J1X5 63 69 IGHV3-74 yes yes 2 0.011689 117.7 By MS/MS 9 0 1 1 4001100 4001100 0 0 4771 4 4971 20123 16893 16893 1 2245800 0 0 GLVYETSVLDPDEGIR QITVDMMYGGMRGMKGLVYETSVLDPDEGI LVYETSVLDPDEGIRFRGFSIPECQKLLPK K G L I R F 0 1 0 2 0 0 2 2 0 1 2 0 0 0 1 1 1 0 1 2 0 0 16 0 1761.8785 O75390 O75390 77 92 CS Citrate synthase, mitochondrial yes yes 2 4.9512E-05 113.22 By MS/MS 5 0 1 1 2462200 2462200 0 0 4772 257 4972 20124 16894 16894 1 1972500 0 0 GLVYSSNFQNVK AGVLAGVESRQGSIKGLVYSSNFQNVKQLY SIKGLVYSSNFQNVKQLYALVCETQRYSAV K G L V K Q 0 0 2 0 0 1 0 1 0 0 1 1 0 1 0 2 0 0 1 2 0 0 12 0 1354.6881 Q96P11 Q96P11 23 34 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 0.00049925 125.82 By MS/MS 5 0 1 1 20760000 0 20760000 0 4773 1815 4973 20125 16895 16895 1 0 5351400 0 GLYAAAAGVLAGVESR ______________________________ LYAAAAGVLAGVESRQGSIKGLVYSSNFQN M G L S R Q 5 1 0 0 0 0 1 3 0 0 2 0 0 0 0 1 0 0 1 2 0 0 16 0 1503.8045 Q96P11 Q96P11 2 17 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 1.5918E-05 131.43 By MS/MS 4.5 0.5 1 1 2 525550 0 525550 0 4774 1815 4974 20126;20127 16896;16897 16897 2 0 154330 0 GLYCYELDEK DAFTDLKNGSLFAFRGLYCYELDEKAVRPG LFAFRGLYCYELDEKAVRPGYPKLIRDVWG R G L E K A 0 0 0 1 1 0 2 1 0 0 2 1 0 0 0 0 0 0 2 0 0 0 10 0 1288.5646 CON__Q3ZBS7 CON__Q3ZBS7 173 182 yes yes 2 0.0015498 108.74 By MS/MS By matching 5.17 1.07 2 2 1 1 2 4 73699000 44566000 0 29133000 + 4775 88 4975 20128;20129;20130;20131;20132;20133 16898;16899 16899 2 35023000 0 4455900 GMAAAGNYAWVNR ACARIASPEGQDYLKGMAAAGNYAWVNRSS LKGMAAAGNYAWVNRSSMTFLTRQAFAKVF K G M N R S 4 1 2 0 0 0 0 2 0 0 0 0 1 0 0 0 0 1 1 1 0 0 13 0 1379.6405 Q9Y3I0 Q9Y3I0 309 321 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 1.0512E-11 128.12 By MS/MS 4 0 1 1 47707000 0 47707000 0 4776 2276 4976 20134 16900 16900 0 0 15832000 0 GMALEQLPLVHDHETGIK G M I K 1 0 0 1 0 1 2 2 2 1 3 1 1 0 1 0 1 0 0 1 0 0 18 0 1987.0197 REV__Q86X40 yes yes 2 0.0059018 68.44 By MS/MS 2 0 1 1 6817500 0 0 6817500 + 4777 2338 4977 20135 16901 16901 1 0 0 1540600 GMELSVLDSLNAR TVAIVLENRSSSILKGMELSVLDSLNARMA LKGMELSVLDSLNARMARPQGSSVHDGVPV K G M A R M 1 1 1 1 0 0 1 1 0 0 3 0 1 0 0 2 0 0 0 1 0 0 13 0 1403.7079 O14617 O14617 963 975 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.00043027 123.42 By matching By MS/MS 2 0 2 1 1 12879000 8499200 0 4380300 4778 139 4978 20136;20137 16902 16902 1 10240000 0 989870 GMFNSALEVAK TGFPYKIFKNTSFIKGMFNSALEVAKFEGA SFIKGMFNSALEVAKFEGAVIRTVSGIRGQ K G M A K F 2 0 1 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 1 0 0 11 0 1165.5801 Q14692 Q14692 1045 1055 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0029874 94.309 By MS/MS 2 0 1 1 4862200 0 0 4862200 4779 1315 4979 20138 16903 16903 0 0 0 1098800 GMGGAFVLVLYDELKK GGKAFFKGAWSNVLRGMGGAFVLVLYDELK MGGAFVLVLYDELKKVI_____________ R G M K K V 1 0 0 1 0 0 1 3 0 0 3 2 1 1 0 0 0 0 1 2 0 0 16 1 1738.9328 P12236 P12236 281 296 SLC25A6 ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed yes yes 3 0.00089568 80.534 By MS/MS By MS/MS 6 0 2 1 1 22534000 0 3175900 19358000 4780 534 4980 20139;20140 16904;16905 16905 2 0 1099400 2896200 GMGGHGYGGAGDASSGFHGGHFVHMR GYGNDGFDDRMRDGRGMGGHGYGGAGDASS DASSGFHGGHFVHMRGLPFRATENDIANFF R G M M R G 2 1 0 1 0 0 0 10 4 0 0 0 2 2 0 2 0 0 1 1 0 0 26 0 2542.0767 P31942 P31942 175 200 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 3;4;5 9.4272E-53 202.43 By matching By MS/MS By MS/MS 5.48 1.17 1 1 2 3 14 2 2 9 12 1017300000 9277700 273510000 734540000 4781 721 4981;4982 20141;20142;20143;20144;20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155;20156;20157;20158;20159;20160;20161;20162;20163 16906;16907;16908;16909;16910;16911;16912;16913;16914;16915;16916;16917;16918;16919;16920;16921;16922 16914 320;321 16 12353000 94406000 109880000 GMGPGTPAGYGR FGQGGAGPVGGQGPRGMGPGTPAGYGRGRE GPRGMGPGTPAGYGRGREEYEGPNKKPRF_ R G M G R G 1 1 0 0 0 0 0 5 0 0 0 0 1 0 2 0 1 0 1 0 0 0 12 0 1119.5131 P23246 P23246 682 693 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.00019346 132.38 By matching By MS/MS By MS/MS 2.17 0.687 1 3 2 1 2 3 171030000 15315000 56382000 99330000 4782 638 4983 20164;20165;20166;20167;20168;20169 16923;16924;16925;16926;16927 16927 5 18453000 25251000 20554000 GMGTVEGGDQSNPK GSQGAKDEPEEELQKGMGTVEGGDQSNPKS KGMGTVEGGDQSNPKSKKEKKKSDKRKKDK K G M P K S 0 0 1 1 0 1 1 4 0 0 0 1 1 0 1 1 1 0 0 1 0 0 14 0 1375.6038 Q13428 Q13428 1424 1437 TCOF1 Treacle protein yes yes 2 0.00078908 113.47 By MS/MS 4.67 1.25 1 1 1 3 3785400 0 3785400 0 4783 1247 4984 20170;20171;20172 16928;16929 16929 2 0 1332100 0 GMIDGSTPTITPNPNFR NALLEPGGVLTISERGMIDGSTPTITPNPN IDGSTPTITPNPNFRLFLSMDPVHGDISRA R G M F R L 0 1 2 1 0 0 0 2 0 2 0 0 1 1 3 1 3 0 0 0 0 0 17 0 1816.8778 Q9NU22 Q9NU22 2271 2287 MDN1 Midasin yes yes 2 1.0218E-05 114.24 By MS/MS 1 0 1 1 3473900 0 3473900 0 4784 2056 4985 20173 16930 16930 1 0 1698000 0 GMLDPLEVHLLDFPNIVIK LPVEEQPKQIIVTRKGMLDPLEVHLLDFPN PLEVHLLDFPNIVIKGSELQLPFQACLKVE K G M I K G 0 0 1 2 0 0 1 1 1 2 4 1 1 1 2 0 0 0 0 2 0 0 19 0 2162.1809 Q6P2Q9 Q6P2Q9 1867 1885 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.0059819 52.298 By MS/MS 1 0 1 1 21714000 0 0 21714000 4785 1490 4986 20174 16931 16931 1 0 0 4678500 GMLPASSDLPNHPK G M P K 1 0 1 1 0 0 0 1 1 0 2 1 1 0 3 2 0 0 0 0 0 0 14 0 1462.7238 REV__Q96T21 yes yes 2 0.00045051 126.07 By MS/MS 4 0 1 1 6433200 0 6433200 0 + 4786 2341 4987 20175 16932 16932 750 1 0 2135000 0 GMLPDPK IIYRAAYFGIYDTAKGMLPDPKNTHIVISW FGIYDTAKGMLPDPKNTHIVISWMIAQTVT K G M P K N 0 0 0 1 0 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 0 0 7 0 756.38401 P05141;P12235;P12236 P05141 200 206 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 1 0.01925 131.3 By MS/MS 6 0 1 1 18521000 0 0 18521000 4787 427;533;534 4988 20176 16933 16933 1 0 0 2770900 GMPQEER QLLVEQNFPAIAIHRGMPQEERLSRYQQFK FPAIAIHRGMPQEERLSRYQQFKDFQRRIL R G M E R L 0 1 0 0 0 1 2 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 7 0 845.37015 Q13838 Q13838 320 326 DDX39B Spliceosome RNA helicase DDX39B yes yes 2 0.067816 73.039 By MS/MS 5 0 1 1 2052400 0 2052400 0 4788 1271 4989 20177 16934 16934 1 0 529050 0 GMQDLVEDFK DSIVGERGRLDSELRGMQDLVEDFKNKYED DSELRGMQDLVEDFKNKYEDEINKRTAAEN R G M F K N 0 0 0 2 0 1 1 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 10 0 1180.5434 P02538;CON__P02538 P02538 241 250 KRT6A Keratin, type II cytoskeletal 6A yes no 2 0.00022839 122.28 By MS/MS By matching By MS/MS 4.86 2.75 2 1 2 2 2 1 1 1 1 1 7 1 6 105790000 67743000 1140500 36905000 + 4789 37 4990 20178;20179;20180;20181;20182;20183;20184;20185;20186;20187;20188;20189;20190;20191 16935;16936;16937;16938;16939;16940;16941 16937 7 57944000 557470 6352100 GMSIDQALAQLEFNDKK KYSKDKMWYLAKLIRGMSIDQALAQLEFND SIDQALAQLEFNDKKGAKIIKEVLLEAQDM R G M K K G 2 0 1 2 0 2 1 1 0 1 2 2 1 1 0 1 0 0 0 0 0 0 17 1 1906.9459 Q9NWU5 Q9NWU5 90 106 MRPL22 39S ribosomal protein L22, mitochondrial yes yes 3 0.001585 68.576 By matching By MS/MS 6.5 0.5 1 1 1 1 4324100 571430 0 3752700 4790 2080 4991 20192;20193 16942 16942 1 760870 0 665890 GMSVSDLADKLSTDDLNSLIAHAHR RELDSITPEVLPGWKGMSVSDLADKLSTDD LSTDDLNSLIAHAHRRIDQLNRELAEQKAT K G M H R R 3 1 1 4 0 0 0 1 2 1 4 1 1 0 0 4 1 0 0 1 0 0 25 1 2665.313 Q16891 Q16891 386 410 IMMT MICOS complex subunit MIC60 yes yes 5 0.050849 22.569 By MS/MS 2.5 0.5 1 1 2 4082100 0 0 4082100 4791 1403 4992 20194;20195 16943 16943 1 0 0 822650 GMTLVTPLQLLLFASK FVFGEKIRTRAISAKGMTLVTPLQLLLFAS MTLVTPLQLLLFASKKVQSDGQIVLVDDWI K G M S K K 1 0 0 0 0 1 0 1 0 0 5 1 1 1 1 1 2 0 0 1 0 0 16 0 1731.0005 Q08211 Q08211 1058 1073 DHX9 ATP-dependent RNA helicase A yes yes 2;3 3.5889E-05 122.7 By MS/MS By MS/MS 3.08 1.94 6 8 3 3 1 3 2 14 12 728320000 0 171380000 556930000 4792 1182 4993;4994 20196;20197;20198;20199;20200;20201;20202;20203;20204;20205;20206;20207;20208;20209;20210;20211;20212;20213;20214;20215;20216;20217;20218;20219;20220;20221 16944;16945;16946;16947;16948;16949;16950;16951;16952;16953;16954;16955;16956;16957;16958;16959;16960;16961;16962;16963 16960 559 20 0 76758000 122690000 GMTLVTPLQLLLFASKK FVFGEKIRTRAISAKGMTLVTPLQLLLFAS TLVTPLQLLLFASKKVQSDGQIVLVDDWIK K G M K K V 1 0 0 0 0 1 0 1 0 0 5 2 1 1 1 1 2 0 0 1 0 0 17 1 1859.0954 Q08211 Q08211 1058 1074 DHX9 ATP-dependent RNA helicase A yes yes 3 0.00049004 82.707 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 10583000 0 1082800 9500000 4793 1182 4995 20222;20223;20224;20225 16964;16965;16966 16966 3 0 487620 2115800 GMTNINDALLR NIQEASKFVMDIQDRGMTNINDALLRGISM IQDRGMTNINDALLRGISMLNKAREEHTVP R G M L R G 1 1 2 1 0 0 0 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 11 0 1216.6234 CON__Q0V8M9 CON__Q0V8M9 358 368 yes yes 2 0.0038622 104.2 By MS/MS 7 0 1 1 4777600 0 4777600 0 + 4794 75 4996 20226 16967 16967 1 0 2743300 0 GMTSESDSIGLTPGEK KLSDGIGVMLPQVLKGMTSESDSIGLTPGE MTSESDSIGLTPGEKSELALSALGGCVFYL K G M E K S 0 0 0 1 0 0 2 3 0 1 1 1 1 0 1 3 2 0 0 0 0 0 16 0 1607.7349 P52701 P52701 661 676 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.0043522 82.85 By MS/MS 2 0 1 1 2601400 0 2601400 0 4795 911 4997 20227 16968 16968 1 0 1171400 0 GNAGGIQPDLLISLTAPK PIASIDIPSGWDVEKGNAGGIQPDLLISLT GGIQPDLLISLTAPKKSATQFTGRYHYLGG K G N P K K 2 0 1 1 0 1 0 3 0 2 3 1 0 0 2 1 1 0 0 0 0 0 18 0 1763.9781 Q8NCW5 Q8NCW5 228 245 APOA1BP NAD(P)H-hydrate epimerase yes yes 2 0.00609 67.997 By MS/MS By matching 7 0 2 1 1 3674400 0 1035600 2638800 4796 1633 4998 20228;20229 16969 16969 1 0 594670 468230 GNAIYNLLPDIISR IAALAKNFFNELSHKGNAIYNLLPDIISRL KGNAIYNLLPDIISRLSDPELGVEEEPFHT K G N S R L 1 1 2 1 0 0 0 1 0 3 2 0 0 0 1 1 0 0 1 0 0 0 14 0 1557.8515 Q15021 Q15021 1160 1173 NCAPD2 Condensin complex subunit 1 yes yes 2 0.015785 76.533 By MS/MS 2 0 1 1 1962300 0 1962300 0 4797 1332 4999 20230 16970 16970 1 0 883630 0 GNAMVEEGHFAAEDVK EIAGHEPRIKAVTQKGNAMVEEGHFAAEDV NAMVEEGHFAAEDVKAKLHELNQKWEALKA K G N V K A 3 0 1 1 0 0 3 2 1 0 0 1 1 1 0 0 0 0 0 2 0 0 16 0 1702.7621 Q13813 Q13813 847 862 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.3545E-12 178.84 By MS/MS By MS/MS 1.25 0.433 6 2 4 4 155910000 0 30887000 125030000 4798 1268 5000;5001 20231;20232;20233;20234;20235;20236;20237;20238 16971;16972;16973;16974;16975;16976;16977;16978 16976 581 8 0 15097000 27107000 GNDISSGTVLSDYVGSGPPK PKYREWHHFLVVNMKGNDISSGTVLSDYVG SGTVLSDYVGSGPPKGTGLHRYVWLVYEQD K G N P K G 0 0 1 2 0 0 0 4 0 1 1 1 0 0 2 4 1 0 1 2 0 0 20 0 1948.9378 P30086 P30086 94 113 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 3.2566E-14 154.65 By MS/MS By MS/MS By MS/MS 7.29 2.86 1 3 1 2 4 1 2 24328000 8603500 3514100 12211000 4799 710 5002 20239;20240;20241;20242;20243;20244;20245 16979;16980;16981;16982;16983 16980 5 10316000 2017800 3473600 GNDTFVTLDEILR ATDIHLGFMEKDAVRGNDTFVTLDEILRLA VRGNDTFVTLDEILRLAQENEVDFILLGGD R G N L R L 0 1 1 2 0 0 1 1 0 1 2 0 0 1 0 0 2 0 0 1 0 0 13 0 1491.7569 P49959 P49959 33 45 MRE11A Double-strand break repair protein MRE11A yes yes 2 0.00034159 141.89 By matching By MS/MS 2.5 1.12 1 1 1 1 1 3 14500000 236900 0 14263000 4800 875 5003 20246;20247;20248;20249 16984;16985 16985 2 236900 0 2792200 GNEEAQIFRPLK VDQPIVKTATITEPRGNEEAQIFRPLKFNT EPRGNEEAQIFRPLKFNTTSVIKIAVEPVN R G N L K F 1 1 1 0 0 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 12 1 1400.7412 Q15029 Q15029 570 581 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 9.0797E-25 203.55 By MS/MS By MS/MS 2.12 0.927 2 4 1 1 5 3 98273000 0 37270000 61002000 4801 1335 5004 20250;20251;20252;20253;20254;20255;20256;20257 16986;16987;16988;16989 16989 4 0 16860000 13561000 GNENANGAPAITLLIR SKKKVEFLKQIANTKGNENANGAPAITLLI NENANGAPAITLLIREKNESNKSSFDKMIE K G N I R E 3 1 3 0 0 0 1 2 0 2 2 0 0 0 1 0 1 0 0 0 0 0 16 0 1622.874 Q9Y5B9 Q9Y5B9 93 108 SUPT16H FACT complex subunit SPT16 yes yes 2 9.7696E-06 154.67 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 41683000 0 17733000 23950000 4802 2296 5005 20258;20259;20260;20261 16990;16991;16992 16990 3 0 8087100 5304800 GNFGGSFAGSFGGAGGHAPGVAR GGGGASFDRAIEMERGNFGGSFAGSFGGAG GSFGGAGGHAPGVARKACQIFVRNLPFDFT R G N A R K 4 1 1 0 0 0 0 9 1 0 0 0 0 3 1 2 0 0 0 1 0 0 23 0 2033.9456 P52272 P52272 628 650 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3;4 5.7091E-150 280.87 By MS/MS By MS/MS By MS/MS 4.41 2.35 3 3 6 3 3 3 3 1 2 1 8 18 1586000000 38467000 546800000 1000700000 4803 902 5006 20262;20263;20264;20265;20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276;20277;20278;20279;20280;20281;20282;20283;20284;20285;20286;20287;20288 16993;16994;16995;16996;16997;16998;16999;17000;17001;17002;17003;17004;17005;17006;17007;17008;17009;17010;17011;17012;17013;17014;17015;17016;17017;17018;17019;17020;17021 17011 29 44382000 230150000 196360000 GNFHAVYR LNSIIDVYHKYSLIKGNFHAVYRDDLKKLL HKYSLIKGNFHAVYRDDLKKLLETECPQYI K G N Y R D 1 1 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 1 1 0 0 8 0 962.47225 P05109 P05109 24 31 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 2 0.0013071 117.62 By MS/MS By matching By MS/MS 7.67 3.3 1 1 1 3 4 1 1 21140000 16439000 448320 4253200 4804 424 5007 20289;20290;20291;20292;20293;20294 17022;17023;17024;17025;17026 17025 5 17947000 2268100 9302300 GNFNYIEFTR EEVDELYREAPIDKKGNFNYIEFTRILKHG PIDKKGNFNYIEFTRILKHGAKDKDD____ K G N T R I 0 1 2 0 0 0 1 1 0 1 0 0 0 2 0 0 1 0 1 0 0 0 10 0 1259.5935 P19105;O14950 P19105 151 160 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 2 2.3278E-22 190.26 By MS/MS By MS/MS 7.88 1.36 1 3 2 2 4 4 304970000 0 218230000 86735000 4805 154 5008 20295;20296;20297;20298;20299;20300;20301;20302 17027;17028;17029;17030;17031;17032;17033 17033 7 0 154090000 18596000 GNFNYVEFTR EEVDEMYREAPIDKKGNFNYVEFTRILKHG PIDKKGNFNYVEFTRILKHGAKDKDD____ K G N T R I 0 1 2 0 0 0 1 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 10 0 1245.5778 P24844 P24844 152 161 MYL9 Myosin regulatory light polypeptide 9 yes yes 2 0.002475 105.52 By MS/MS By matching 7.67 0.471 1 2 2 1 7076900 0 4592200 2484700 4806 652 5009 20303;20304;20305 17034;17035 17034 2 0 2401200 380930 GNFTLPEVAECFDEITYVELQK VEGKDLPEHAVLKMKGNFTLPEVAECFDEI VAECFDEITYVELQKEEAQKLLEQYKEESK K G N Q K E 1 0 1 1 1 1 4 1 0 1 2 1 0 2 1 0 2 0 1 2 0 0 22 0 2601.2309 Q00839 Q00839 638 659 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 0.001028 60.278 By MS/MS 2 0 1 1 3583300 0 0 3583300 4807 1127 5010 20306 17036 17036 1 0 0 809770 GNIIISTPEK LLTGETSTDLKLLGKGNIIISTPEKWDILS KLLGKGNIIISTPEKWDILSRRWKQRKNVQ K G N E K W 0 0 1 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 0 0 0 10 0 1070.5972 O75643 O75643 1422 1431 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0033074 102.62 By MS/MS 1 0 1 1 18668000 0 18668000 0 4808 277 5011 20307 17037 17037 1 0 9124800 0 GNIIISTPEKWDILSR LLTGETSTDLKLLGKGNIIISTPEKWDILS NIIISTPEKWDILSRRWKQRKNVQNINLFV K G N S R R 0 1 1 1 0 0 1 1 0 4 1 1 0 0 1 2 1 1 0 0 0 0 16 1 1841.0047 O75643 O75643 1422 1437 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.0020622 74.12 By MS/MS By MS/MS 1 0 2 1 1 10709000 0 4007200 6702000 4809 277 5012 20308;20309 17038;17039 17038 2 0 1958700 1444100 GNILIPGLSQKPISSFADFER LDPASGDLVIREDCRGNILIPGLSQKPISS GLSQKPISSFADFERHFLPASRNRTVGATR R G N E R H 1 1 1 1 0 1 1 2 0 3 2 1 0 2 2 3 0 0 0 0 0 0 21 1 2288.2165 Q14807 Q14807 203 223 KIF22 Kinesin-like protein KIF22 yes yes 3 0.0053968 49.528 By MS/MS 3 0 1 1 1062900 0 1062900 0 4810 1320 5013 20310 17040 17040 1 0 453120 0 GNIVFVTLR RYVASAVFGVIGSQKGNIVFVTLRGEKGRY VIGSQKGNIVFVTLRGEKGRYVAVPACEHV K G N L R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 2 0 0 9 0 1017.5971 Q9UNX4 Q9UNX4 24 32 WDR3 WD repeat-containing protein 3 yes yes 2 0.0030141 101.54 By MS/MS 2 0 1 1 2062400 0 2062400 0 4811 2212 5014 20311 17041 17041 1 0 928750 0 GNKPWISLPR NSFATRLSNIFVIGKGNKPWISLPRGKGIR FVIGKGNKPWISLPRGKGIRLTIAEERDKR K G N P R G 0 1 1 0 0 0 0 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 10 1 1166.656 P62701 P62701 231 240 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.0031727 118.33 By matching By MS/MS By MS/MS 6.86 1.25 1 2 2 1 1 1 3 3 328020000 13125000 80732000 234160000 4812 1029 5015 20312;20313;20314;20315;20316;20317;20318 17042;17043;17044;17045 17045 4 10515000 32115000 39048000 GNLANVIR VVRIPKEQGVLSFWRGNLANVIRYFPTQAL GVLSFWRGNLANVIRYFPTQALNFAFKDKY R G N I R Y 1 1 2 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 855.49265 P05141;Q9H0C2;P12235;P12236 P05141 73 80 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.00092379 122.98 By MS/MS By MS/MS By MS/MS 6.5 0.5 2 2 1 1 2 128820000 14360000 49445000 65011000 4813 427;533;534 5016 20319;20320;20321;20322 17046;17047;17048;17049;17050 17049 5 30949000 17116000 9726300 GNLEVLLFTIQSK NTYRTVEKPPKFTEKGNLEVLLFTIQSKMR EKGNLEVLLFTIQSKMRANNQKVYMPREGK K G N S K M 0 0 1 0 0 1 1 1 0 1 3 1 0 1 0 1 1 0 0 1 0 0 13 0 1460.8239 Q01082;O15020 Q01082 360 372 SPTBN1;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2 no no 2 0.00098687 114.86 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 10984000 0 1191800 9792600 4814 1128;160 5017 20323;20324;20325 17051;17052;17053 17051 3 0 582520 2117200 GNLGAGNGNLQGPR PPPSFHLGGPAVGPRGNLGAGNGNLQGPRH RGNLGAGNGNLQGPRHMQKGRVETSRVVHI R G N P R H 1 1 3 0 0 1 0 5 0 0 2 0 0 0 1 0 0 0 0 0 0 0 14 0 1323.6644 P43243 P43243 374 387 MATR3 Matrin-3 yes yes 2 1.4027E-45 225.66 By MS/MS By MS/MS By MS/MS 1.8 0.748 2 2 1 1 3 1 43686000 10441000 28553000 4692300 4815 812 5018 20326;20327;20328;20329;20330 17054;17055;17056;17057;17058 17056 5 12580000 12871000 1011000 GNLGVYQETR RLDRLSGLADQMVARGNLGVYQETRERLAM QMVARGNLGVYQETRERLAMRLKGLGCQTL R G N T R E 0 1 1 0 0 1 1 2 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1135.5622 O95400 O95400 213 222 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 yes yes 2 0.021275 82.287 By MS/MS 4.67 1.25 1 1 1 3 18852000 0 0 18852000 4816 324 5019 20331;20332;20333 17059 17059 1 0 0 2987300 GNNVLYISTQK VNGQLKNKYGDAFIRGNNVLYISTQKRRM_ AFIRGNNVLYISTQKRRM____________ R G N Q K R 0 0 2 0 0 1 0 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 11 0 1235.651 P62312 P62312 67 77 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.00026061 134.66 By MS/MS By MS/MS By MS/MS 10 0 3 1 1 1 57592000 3143200 8065400 46383000 4817 1021 5020 20334;20335;20336 17060;17061;17062 17061 3 5726300 40804000 101440000 GNPTVEVDLFTSK MSILKIHAREIFDSRGNPTVEVDLFTSKGL SRGNPTVEVDLFTSKGLFRAAVPSGASTGI R G N S K G 0 0 1 1 0 0 1 1 0 0 1 1 0 1 1 1 2 0 0 2 0 0 13 0 1405.7089 P06733 P06733 16 28 ENO1 Alpha-enolase yes yes 2 0.0048268 100.92 By MS/MS By MS/MS By MS/MS 6.36 2.23 3 2 2 1 1 2 2 4 5 98036000 15232000 33243000 49562000 4818 448 5021 20337;20338;20339;20340;20341;20342;20343;20344;20345;20346;20347 17063;17064;17065;17066;17067;17068;17069;17070;17071 17066 9 11049000 27643000 14523000 GNSEGNTWLTAFVLK YKHFDGSYSTFGEHRGNSEGNTWLTAFVLK GNSEGNTWLTAFVLKSFAQARGYIFIDEAH R G N L K S 1 0 2 0 0 0 1 2 0 0 2 1 0 1 0 1 2 1 0 1 0 0 15 0 1635.8257 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1037 1051 yes yes 2 0.0018764 91.937 By MS/MS By MS/MS By matching 5.8 0.98 1 3 1 2 2 1 9801600 2104300 3036000 4661300 + 4819 28 5022 20348;20349;20350;20351;20352 17072;17073;17074;17075 17072 4 3630800 1035800 697390 GNSIIMLEALER ATSGQQNNIGMVVIRGNSIIMLEALERV__ VIRGNSIIMLEALERV______________ R G N E R V 1 1 1 0 0 0 2 1 0 2 2 0 1 0 0 1 0 0 0 0 0 0 12 0 1344.7071 P62308;A8MWD9 P62308 64 75 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.0029222 108.47 By MS/MS By MS/MS 9.8 0.4 1 4 3 2 41948000 0 17390000 24557000 4820 19 5023;5024 20353;20354;20355;20356;20357 17076;17077;17078;17079;17080 17077 5 5 0 84815000 53709000 GNSIIMLEALERV ATSGQQNNIGMVVIRGNSIIMLEALERV__ IRGNSIIMLEALERV_______________ R G N R V - 1 1 1 0 0 0 2 1 0 2 2 0 1 0 0 1 0 0 0 1 0 0 13 1 1443.7755 P62308;A8MWD9 P62308 64 76 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.02957 80.979 By matching By MS/MS 8 0.707 1 2 1 2 2 9833100 0 4978200 4854800 4821 19 5025 20358;20359;20360;20361 17081 17081 1 0 2307900 1226800 GNTAAYLLYAFTR LNDYIFSFDKMLDDRGNTAAYLLYAFTRIR DRGNTAAYLLYAFTRIRSIARLANIDEEML R G N T R I 3 1 1 0 0 0 0 1 0 0 2 0 0 1 0 0 2 0 2 0 0 0 13 0 1459.746 P54136 P54136 528 540 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0055516 98.898 By MS/MS By MS/MS 3 0 2 1 1 7803900 0 2147400 5656500 4822 927 5026 20362;20363 17082;17083 17083 2 0 915440 1097100 GNTSGSHIVNHLVR VVYCNTSKKWFCNGRGNTSGSHIVNHLVRA RGNTSGSHIVNHLVRAKCKEVTLHKDGPLG R G N V R A 0 1 2 0 0 0 0 2 2 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1489.775 Q92900 Q92900 149 162 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.00029253 105.65 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 18708000 0 2498200 16210000 4823 1729 5027 20364;20365;20366 17084;17085;17086 17086 3 0 1221100 3612400 GNVFSSPTAAGTPNKETAGLK VPAEGVRNIKSMWEKGNVFSSPTAAGTPNK PTAAGTPNKETAGLKVGVSSRINEWLTKTP K G N L K V 3 0 2 0 0 0 1 3 0 0 1 2 0 1 2 2 3 0 0 1 0 0 21 1 2046.0382 Q05682 Q05682 719 739 CALD1 Caldesmon yes yes 3 0.0039413 52.853 By MS/MS 3 0 1 1 2161100 0 2161100 0 4824 1166 5028 20367 17087 17087 1 0 921260 0 GNVGFVFTK LENNPALEKLLPHIRGNVGFVFTKEDLTEI LLPHIRGNVGFVFTKEDLTEIRDMLLANKV R G N T K E 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 2 0 0 9 0 967.51272 P05388 P05388 84 92 RPLP0 60S acidic ribosomal protein P0 yes yes 2 0.0017174 107.01 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 362370000 0 143080000 219290000 4825 432 5029 20368;20369;20370;20371 17088;17089;17090;17091 17089 4 0 48747000 32417000 GNVGFVFTKEDLTEIR LENNPALEKLLPHIRGNVGFVFTKEDLTEI NVGFVFTKEDLTEIRDMLLANKVPAAARAG R G N I R D 0 1 1 1 0 0 2 2 0 1 1 1 0 2 0 0 2 0 0 2 0 0 16 1 1823.9418 P05388 P05388 84 99 RPLP0 60S acidic ribosomal protein P0 yes yes 3 9.5758E-10 173.36 By MS/MS By MS/MS 6 0 2 1 1 13328000 0 9783500 3544100 4826 432 5030 20372;20373 17092;17093 17092 2 0 3386700 530230 GNVGIGGSAVPPPPIK IARKPAKPQPKLKPKGNVGIGGSAVPPPPI NVGIGGSAVPPPPIKHNMNIGTWDEKGSVV K G N I K H 1 0 1 0 0 0 0 4 0 2 0 1 0 0 4 1 0 0 0 2 0 0 16 0 1458.8195 Q7Z739 Q7Z739 256 271 YTHDF3 YTH domain-containing family protein 3 yes yes 2 0.00075129 96.64 By MS/MS 4.5 0.5 1 1 2 6054600 0 6054600 0 4827 1535 5031 20374;20375 17094 17094 1 0 1766200 0 GNVPSSELQIYTWMDATLK TTNNGRHHRMDEFSRGNVPSSELQIYTWMD SSELQIYTWMDATLKELTSLVKEVYPEARK R G N L K E 1 0 1 1 0 1 1 1 0 1 2 1 1 0 1 2 2 1 1 1 0 0 19 0 2152.0511 O00422 O00422 49 67 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2 4.222E-09 150.16 By MS/MS 8 0 1 1 8572300 0 0 8572300 4828 120 5032 20376 17095 17095 1 0 0 1314200 GNWAHSGFPEIAFGR DALIGVSELGLVFMKGNWAHSGFPEIAFGR GNWAHSGFPEIAFGRYSDSLVQKGYKVARV K G N G R Y 2 1 1 0 0 0 1 3 1 1 0 0 0 2 1 1 0 1 0 0 0 0 15 0 1644.7797 P52701 P52701 454 468 MSH6 DNA mismatch repair protein Msh6 yes yes 3 0.018836 52.662 By MS/MS 2 0 1 1 3365000 0 3365000 0 4829 911 5033 20377 17096 17096 1 0 1515300 0 GNYDEGFGHRPHK RIYCKPHFNQLFKSKGNYDEGFGHRPHKDL SKGNYDEGFGHRPHKDLWASKNENEEILER K G N H K D 0 1 1 1 0 0 1 3 2 0 0 1 0 1 1 0 0 0 1 0 0 0 13 1 1512.6858 Q9UHB6 Q9UHB6 450 462 LIMA1 LIM domain and actin-binding protein 1 yes yes 3 0.060102 44.71 By MS/MS 2 0 1 1 1110400 0 0 1110400 4830 2150 5034 20378 17097 17097 1 0 0 250930 GPAFVNPLIPESPEEEELFR LDATFVMVARDSENKGPAFVNPLIPESPEE NPLIPESPEEEELFRQGELNKGRRIAFSST K G P F R Q 1 1 1 0 0 0 5 1 0 1 2 0 0 2 4 1 0 0 0 1 0 0 20 0 2269.1267 Q9Y305 Q9Y305 212 231 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2;3 1.583E-45 208.27 By MS/MS By MS/MS 4.67 0.471 2 4 2 4 52189000 0 3012000 49177000 4831 2256 5035 20379;20380;20381;20382;20383;20384 17098;17099;17100;17101;17102;17103 17100 6 0 776400 7388300 GPALLPPPPQMLAPAFPPPLLLPPPTGDPR GPALGGLFASLPAPKGPALLPPPPQMLAPA FPPPLLLPPPTGDPRLQPPPPLPFGLGGFP K G P P R L 3 1 0 1 0 1 0 2 0 0 6 0 1 1 13 0 1 0 0 0 0 0 30 0 3063.6984 Q92733 Q92733 47 76 PRCC Proline-rich protein PRCC yes yes 3 0.064571 16.202 By MS/MS 4 0 1 1 872090 0 872090 0 4832 1717 5036 20385 17104 17104 1 0 289410 0 GPASQFYITPSTSLSPR HPAEGTKSKWGMIPRGPASQFYITPSTSLS ASQFYITPSTSLSPRQSGPQWKGPKPAFGQ R G P P R Q 1 1 0 0 0 1 0 1 0 1 1 0 0 1 3 4 2 0 1 0 0 0 17 0 1807.9105 P49750 P49750 815 831 YLPM1 YLP motif-containing protein 1 yes yes 2 9.1438E-14 182.37 By MS/MS 1 0 1 1 5106700 0 5106700 0 4833 865 5037 20386 17105 17105 1 0 2496100 0 GPASTPTYSPAPTQPAPR AIDEADIPPPVAIGKGPASTPTYSPAPTQP STPTYSPAPTQPAPRIASAPEPRVTLEGPS K G P P R I 3 1 0 0 0 1 0 1 0 0 0 0 0 0 6 2 3 0 1 0 0 0 18 0 1794.8901 Q6P1N0 Q6P1N0 200 217 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 2.3462E-08 140.01 By MS/MS 2 0 1 1 5337200 0 5337200 0 4834 1488 5038 20387 17106 17106 1 0 2403400 0 GPATLVAPASVITIVK CEALQGFARSVAAARGPATLVAPASVITIV PATLVAPASVITIVKSTPGSGSGPAHGPDP R G P V K S 3 0 0 0 0 0 0 1 0 2 1 1 0 0 2 1 2 0 0 3 0 0 16 0 1535.9287 Q9ULX9 Q9ULX9 126 141 MAFF Transcription factor MafF yes yes 2 0.0033315 85.813 By MS/MS By matching 7 0 2 1 1 5536300 0 2083900 3452300 4835 2196 5039 20388;20389 17107 17107 1 0 1196600 612590 GPAWVGSHGVLQHTQGLPADR PSEQCYQAPGGPEDRGPAWVGSHGVLQHTQ SHGVLQHTQGLPADRGGLRPGSLDAEIDLL R G P D R G 2 1 0 1 0 2 0 4 2 0 2 0 0 0 2 1 1 1 0 2 0 0 21 0 2182.1032 Q15654 Q15654 65 85 TRIP6 Thyroid receptor-interacting protein 6 yes yes 4 5.6758E-05 76.027 By MS/MS 4 0 1 1 18835000 0 0 18835000 4836 1378 5040 20390 17108 17108 1 0 0 3076400 GPCIIYNEDNGIIK AGKGKMRNRRRIQRRGPCIIYNEDNGIIKA RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R G P I K A 0 0 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 14 0 1604.7868 P36578 P36578 206 219 RPL4 60S ribosomal protein L4 yes yes 2 0.00039325 127.76 By matching By MS/MS 4.33 0.471 2 1 1 2 38918000 18825000 0 20093000 4837 762 5041 20391;20392;20393 17109 17109 1 14686000 0 2945100 GPDGLTAFEATDNQAIK CVKLLLSKGADKTVKGPDGLTAFEATDNQA DGLTAFEATDNQAIKALLQ___________ K G P I K A 3 0 1 2 0 1 1 2 0 1 1 1 0 1 1 0 2 0 0 0 0 0 17 0 1746.8424 P58546 P58546 98 114 MTPN Myotrophin yes yes 2 0.0071646 72.089 By matching By MS/MS 9.5 0.5 1 1 1 1 3194700 1645600 1549100 0 4838 959 5042 20394;20395 17110 17110 1 923700 7837000 0 GPDNSMGFGAER DDASAPRLMVLRQPRGPDNSMGFGAERKIR QPRGPDNSMGFGAERKIRQAGVID______ R G P E R K 1 1 1 1 0 0 1 3 0 0 0 0 1 1 1 1 0 0 0 0 0 0 12 0 1236.5193 O75534 O75534 778 789 CSDE1 Cold shock domain-containing protein E1 yes yes 2 0.0002454 130.98 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 9451900 0 6309800 3142100 4839 271 5043 20396;20397 17111;17112 17111 1 0 2841400 609410 GPEPVPLEFIPAQGLLGR ELTAYEIFERDLKKKGPEPVPLEFIPAQGL PVPLEFIPAQGLLGRPGELCAQHFTLS___ K G P G R P 1 1 0 0 0 1 2 3 0 1 3 0 0 1 4 0 0 0 0 1 0 0 18 0 1889.0411 Q9BVI4 Q9BVI4 487 504 NOC4L Nucleolar complex protein 4 homolog yes yes 2 6.3147E-06 108.72 By MS/MS By MS/MS 4 0 2 1 1 11886000 0 2304300 9581300 4840 1914 5044 20398;20399 17113;17114 17114 2 0 764710 1564900 GPFADENFK DFVNGDGTGVASIYRGPFADENFKLRHSAP VASIYRGPFADENFKLRHSAPGLLSMANSG R G P F K L 1 0 1 1 0 0 1 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 9 0 1023.4662 O43447 O43447 93 101 PPIH Peptidyl-prolyl cis-trans isomerase H yes yes 2 0.037165 75.213 By MS/MS By matching 7.33 0.471 2 1 1 2 23815000 0 3552400 20263000 4841 198 5045 20400;20401;20402 17115 17115 1 0 2039800 3458100 GPFLVSAPLSTIINWER TAVFLYSLYKEGHSKGPFLVSAPLSTIINW FLVSAPLSTIINWEREFEMWAPDMYVVTYV K G P E R E 1 1 1 0 0 0 1 1 0 2 2 0 0 1 2 2 1 1 0 1 0 0 17 0 1899.0254 Q14839;Q12873 Q14839 776 792 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2;3 6.5373E-20 193.73 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 130830000 0 4666700 126160000 4842 1321;1205 5046 20403;20404;20405;20406;20407 17116;17117;17118;17119;17120 17118 5 0 2209800 27488000 GPFSEISAFK TAYKFRVAGINACGRGPFSEISAFKTCLPG NACGRGPFSEISAFKTCLPGFPGAPCAIKI R G P F K T 1 0 0 0 0 0 1 1 0 1 0 1 0 2 1 2 0 0 0 0 0 0 10 0 1081.5444 P51610 P51610 1875 1884 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes yes 2 0.037486 76.064 By MS/MS 4 0 1 1 3371800 0 0 3371800 4843 897 5047 20408 17121 17121 1 0 0 550720 GPFTDVVTTNLK EQVLSLEPQHELKFRGPFTDVVTTNLKLGN KFRGPFTDVVTTNLKLGNPTDRNVCFKVKT R G P L K L 0 0 1 1 0 0 0 1 0 0 1 1 0 1 1 0 3 0 0 2 0 0 12 0 1290.682 Q9P0L0;O95292 O95292 20 31 VAPA;VAPB Vesicle-associated membrane protein-associated protein A;Vesicle-associated membrane protein-associated protein B/C no no 2 1.6533E-05 154.05 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 47032000 0 5906300 41125000 4844 317;2116 5048 20409;20410;20411 17122;17123;17124;17125 17124 4 0 3391500 6553000 GPFVTWQVVR VLCRIASNVLNTKVKGPFVTWQVVRDILHA NTKVKGPFVTWQVVRDILHATFEESLDKTS K G P V R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 1 0 3 0 0 10 0 1187.6451 Q12789 Q12789 1289 1298 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.0047263 98.523 By MS/MS 1 0 1 1 6697800 0 0 6697800 4845 1198 5049 20412 17126 17126 1 0 0 1443100 GPGGSSLLIEALSNSSHK KMEKSKDTYLLYEGRGPGGSSLLIEALSNS GSSLLIEALSNSSHKCQADIRHILNKNGGV R G P H K C 1 0 1 0 0 0 1 3 1 1 3 1 0 0 1 5 0 0 0 0 0 0 18 0 1752.9006 Q9BSH4 Q9BSH4 142 159 TACO1 Translational activator of cytochrome c oxidase 1 yes yes 3 0.00044838 76.586 By matching By MS/MS 6.33 0.471 2 1 1 2 10306000 1825800 0 8479900 4846 1897 5050 20413;20414;20415 17127 17127 1 2431100 0 1432500 GPGLASGQLYSYPAR VAQSNCYIWMEKRHRGPGLASGQLYSYPAR GPGLASGQLYSYPARRWRKKRRAHPPEDPR R G P A R R 2 1 0 0 0 1 0 3 0 0 2 0 0 0 2 2 0 0 2 0 0 0 15 0 1535.7732 Q92785 Q92785 63 77 DPF2 Zinc finger protein ubi-d4 yes yes 2 1.3079E-11 179.57 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 17310000 0 7136100 10174000 4847 1722 5051 20416;20417;20418 17128;17129 17128 2 0 1839500 1434900 GPGLGSTQGQTIALPAQGLIEFR NQRGRFLRIRQTVNRGPGLGSTQGQTIALP GQTIALPAQGLIEFRDALAKLIDDYGVEEE R G P F R D 2 1 0 0 0 3 1 5 0 2 3 0 0 1 2 1 2 0 0 0 0 0 23 0 2310.2332 Q00577 Q00577 177 199 PURA Transcriptional activator protein Pur-alpha yes yes 2;3 0 344.16 By MS/MS By MS/MS 5.14 0.639 1 4 2 5 2 78876000 0 38658000 40219000 4848 1124 5052 20419;20420;20421;20422;20423;20424;20425 17130;17131;17132;17133;17134;17135 17134 6 0 11323000 5609800 GPGLLESPSIFNFTADR PSKSHLRHAIPSAERGPGLLESPSIFNFTA GLLESPSIFNFTADRLINGVRSPQTRQAGQ R G P D R L 1 1 1 1 0 0 1 2 0 1 2 0 0 2 2 2 1 0 0 0 0 0 17 0 1819.9105 Q92615 Q92615 428 444 LARP4B La-related protein 4B yes yes 2 9.2108E-06 118.76 By MS/MS 2 0 1 1 11550000 0 11550000 0 4849 1711 5053 20426 17136 17136 1 0 5201000 0 GPGLSQAFVGQK SIPKFSSDASKVVTRGPGLSQAFVGQKNSF VTRGPGLSQAFVGQKNSFTVDCSKAGTNMM R G P Q K N 1 0 0 0 0 2 0 3 0 0 1 1 0 1 1 1 0 0 0 1 0 0 12 0 1187.6299 Q14315 Q14315 2642 2653 FLNC Filamin-C yes yes 2 4.9576E-12 178.55 By MS/MS By matching 2 0.816 1 1 1 2 1 26148000 0 21578000 4569500 4850 1298 5054 20427;20428;20429 17137 17137 1 0 10431000 886260 GPGNPVPGPLAPLPDYMSEEK ______________________________ PGPLAPLPDYMSEEKLQEKARKWQQLQAKR R G P E K L 1 0 1 1 0 0 2 3 0 0 2 1 1 0 6 1 0 0 1 1 0 0 21 0 2164.0511 Q6P2Q9 Q6P2Q9 9 29 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 9.4051E-14 131.86 By MS/MS By MS/MS 3 2.83 2 1 1 2 26765000 0 10300000 16465000 4851 1490 5055 20430;20431;20432 17138;17139;17140 17139 3 0 5034600 3302400 GPGNPVPGPLAPLPDYMSEEKLQEK ______________________________ APLPDYMSEEKLQEKARKWQQLQAKRYAEK R G P E K A 1 0 1 1 0 1 3 3 0 0 3 2 1 0 6 1 0 0 1 1 0 0 25 1 2662.3313 Q6P2Q9 Q6P2Q9 9 33 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 1.1074E-28 132.59 By MS/MS By MS/MS 1 0 2 1 1 38733000 0 19200000 19533000 4852 1490 5056 20433;20434 17141;17142;17143 17141 3 0 9384700 4208600 GPGPLQER HNYHKFDSEYERMGRGPGPLQERSLFEKKR EYERMGRGPGPLQERSLFEKKRGAPPSSNI R G P E R S 0 1 0 0 0 1 1 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 8 0 852.44537 P43243 P43243 256 263 MATR3 Matrin-3 yes yes 2 0.013648 89.296 By MS/MS 2.5 0.5 1 1 2 4953000 0 4953000 0 4853 812 5057 20435;20436 17144 17144 1 0 2212900 0 GPGQVPTATSALSLELQEVEPLGLPQASPSR LPGLLPAPADKLTPKGPGQVPTATSALSLE QEVEPLGLPQASPSRTRSPDVISSASTALS K G P S R T 3 1 0 0 0 3 3 3 0 0 5 0 0 0 5 4 2 0 0 2 0 0 31 0 3128.6354 Q6P2E9 Q6P2E9 696 726 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 1.9732E-06 55.022 By MS/MS 2 0 1 1 2966200 0 2966200 0 4854 1489 5058 20437 17145 17145 1 0 1335700 0 GPGVPFQR VFNSKEQGSWGREERGPGVPFQRGQPFEVL SWGREERGPGVPFQRGQPFEVLIIASDDGF R G P Q R G 0 1 0 0 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 1 0 0 8 0 856.45554 P47929 P47929 76 83 LGALS7 Galectin-7 yes yes 2 0.020323 84.064 By MS/MS 10 0 1 1 6085700 6085700 0 0 4855 840 5059 20438 17146 17146 1 11087000 0 0 GPIKFNVWDTAGQEK TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK GPIKFNVWDTAGQEKFGGLRDGYYIQAQCA R G P E K F 1 0 1 1 0 1 1 2 0 1 0 2 0 1 1 0 1 1 0 1 0 0 15 1 1688.8522 P62826 P62826 57 71 RAN GTP-binding nuclear protein Ran yes yes 3 0.015164 56.527 By MS/MS 7 0 1 1 7873100 0 7873100 0 4856 1035 5060 20439 17147 17147 1 0 4520800 0 GPILLPYQFR FHLGKIEELLSGENRGPILLPYQFRMEEIE SGENRGPILLPYQFRMEEIEGFRYRCRDAM R G P F R M 0 1 0 0 0 1 0 1 0 1 2 0 0 1 2 0 0 0 1 0 0 0 10 0 1202.6812 Q9NY93 Q9NY93 410 419 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2 0.00014636 143.23 By MS/MS 4.5 0.5 1 1 2 24586000 0 24586000 0 4857 2095 5061 20440;20441 17148 17148 1 0 8132800 0 GPILSFASTR LELNASDDRGIDIIRGPILSFASTRTIFKK IDIIRGPILSFASTRTIFKKGFKLVILDEA R G P T R T 1 1 0 0 0 0 0 1 0 1 1 0 0 1 1 2 1 0 0 0 0 0 10 0 1047.5713 P40937 P40937 103 112 RFC5 Replication factor C subunit 5 yes yes 2 4.3773E-09 133.58 By matching By MS/MS By MS/MS 5.6 0.49 2 3 1 1 3 38302000 2215900 15017000 21069000 4858 787 5062 20442;20443;20444;20445;20446 17149;17150;17151 17150 3 1775200 5198200 3152200 GPIQSSGPTIQDYLNRPR NRVAYMNPIAMARSRGPIQSSGPTIQDYLN QSSGPTIQDYLNRPRPTWEEVKEQLEKKKK R G P P R P 0 2 1 1 0 2 0 2 0 2 1 0 0 0 3 2 1 0 1 0 0 0 18 1 1998.0283 Q5BKY9 Q5BKY9 21 38 FAM133B Protein FAM133B yes yes 3 4.0165E-06 105.39 By MS/MS 6 0 1 1 12643000 0 0 12643000 4859 1433 5063 20447 17152 17152 1 0 0 1891500 GPLAAGLGPLVPGK TFARTVARSPVAPARGPLAAGLGPLVPGKV RGPLAAGLGPLVPGKVAATSVITIVKSKTD R G P G K V 2 0 0 0 0 0 0 4 0 0 3 1 0 0 3 0 0 0 0 1 0 0 14 0 1245.7445 O15525 O15525 131 144 MAFG Transcription factor MafG yes yes 2 0.0032224 95.608 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 17109000 0 4546900 12562000 4860 185 5064 20448;20449;20450 17153;17154 17153 2 0 2610800 2057500 GPLDKWR RLIPDGCGVKYIPNRGPLDKWRALHS____ GVKYIPNRGPLDKWRALHS___________ R G P W R A 0 1 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 0 0 7 1 870.47119 P27635 P27635 204 210 RPL10 60S ribosomal protein L10 yes yes 2 0.021853 138.85 By MS/MS By matching 6.67 0.471 1 2 2 1 38997000 0 33776000 5220600 4861 678 5065 20451;20452;20453 17155 17155 1 0 19200000 926360 GPLDNFLR VGSDIDFRPKLVNGKGPLDNFLRNRIETSI PKLVNGKGPLDNFLRNRIETSIGQSTVIID K G P L R N 0 1 1 1 0 0 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 8 0 930.49232 Q13111 Q13111 96 103 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 0.00024955 135.87 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 10680000 0 3697800 6982600 4862 1220 5066 20454;20455;20456 17156;17157;17158;17159 17156 4 0 1665200 1528300 GPLEPSEPAVVAAAR DQRDLAQDEAVWLERGPLEPSEPAVVAAAR GPLEPSEPAVVAAARVGVGHAGEWARKPLR R G P A R V 4 1 0 0 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 2 0 0 15 0 1462.778 P29372 P29372 247 261 MPG DNA-3-methyladenine glycosylase yes yes 2 1.8115E-17 189.72 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 110530000 0 25049000 85484000 4863 698 5067 20457;20458;20459;20460 17160;17161;17162;17163;17164;17165 17164 6 0 9204700 13021000 GPLINSEFYTGWLDHWGQPHSTIK NITDAFLSQRKCEPKGPLINSEFYTGWLDH TGWLDHWGQPHSTIKTEAVASSLYDILARG K G P I K T 0 0 1 1 0 1 1 3 2 2 2 1 0 1 2 2 2 2 1 0 0 0 24 0 2782.3503 P16278 P16278 262 285 GLB1 Beta-galactosidase yes yes 4 5.0935E-05 67.413 By MS/MS 4 0 1 1 7736800 0 0 7736800 4864 576 5068 20461 17166 17166 1 0 0 1263700 GPLIPPLLSLPPPPWGR GDPKSALHRGPPGSRGPLIPPLLSLPPPPW LIPPLLSLPPPPWGRGPIRRGLGPRSSPYG R G P G R G 0 1 0 0 0 0 0 2 0 1 4 0 0 0 7 1 0 1 0 0 0 0 17 0 1806.0556 P79522 P79522 67 83 PRR3 Proline-rich protein 3 yes yes 3 0.0081493 54.598 By MS/MS 7 0 1 1 660190 0 0 660190 4865 1091 5069 20462 17167 17167 1 0 0 117150 GPLLVQDVVFTDEMAHFDR NPVGDKLNVITVGPRGPLLVQDVVFTDEMA VQDVVFTDEMAHFDRERIPERVVHAKGAGA R G P D R E 1 1 0 3 0 1 1 1 1 0 2 0 1 2 1 0 1 0 0 3 0 0 19 0 2188.0623 P04040 P04040 48 66 CAT Catalase yes yes 3 0.014027 44.382 By MS/MS 8.5 0.5 1 1 2 2772700 2772700 0 0 4866 408 5070 20463;20464 17168 17168 1 2124400 0 0 GPLLVSTESHPVK VFQKPSGVSAALALKGPLLVSTESHPVKSG LKGPLLVSTESHPVKSGIHKWISDYADSVP K G P V K S 0 0 0 0 0 0 1 1 1 0 2 1 0 0 2 2 1 0 0 2 0 0 13 0 1362.7507 Q9Y3A4 Q9Y3A4 137 149 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 0.0070447 94.692 By MS/MS By MS/MS 6 0 2 1 1 29745000 0 9530700 20215000 4867 2262 5071 20465;20466 17169;17170 17169 2 0 3299200 3024300 GPLQLER LGENQLETLPPDLLRGPLQLERLHLEGNKL TLPPDLLRGPLQLERLHLEGNKLQVLGKDL R G P E R L 0 1 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 811.4552 P02750 P02750 210 216 LRG1 Leucine-rich alpha-2-glycoprotein yes yes 2 0.0086919 122.79 By MS/MS 9 0 1 1 4325500 4325500 0 0 4868 393 5072 20467 17171 17171 1 2427900 0 0 GPLQSVQVFGR ______________________________ MPSKGPLQSVQVFGRKKTATAVAHCKRGNG K G P G R K 0 1 0 0 0 2 0 2 0 0 1 0 0 1 1 1 0 0 0 2 0 0 11 0 1186.6459 P62249 P62249 5 15 RPS16 40S ribosomal protein S16 yes yes 2 4.2811E-20 195.17 By MS/MS By MS/MS By MS/MS 8.57 1.05 1 3 1 2 1 3 3 347080000 5024700 150430000 191620000 4869 1010 5073 20468;20469;20470;20471;20472;20473;20474 17172;17173;17174;17175;17176;17177;17178;17179;17180;17181;17182 17173 11 4313800 78453000 41942000 GPLQTASVSPSMPFSASLLGTLPIGAR APETNETVMPSALVRGPLQTASVSPSMPFS PFSASLLGTLPIGARYAPPPSFSEFYPPLT R G P A R Y 3 1 0 0 0 1 0 3 0 1 4 0 1 1 4 5 2 0 0 1 0 0 27 0 2654.4102 Q8IWR0 Q8IWR0 308 334 ZC3H7A Zinc finger CCCH domain-containing protein 7A yes yes 2;3 2.6197E-38 134.56 By MS/MS 2.33 0.471 2 1 3 6991200 0 6991200 0 4870 1575 5074 20475;20476;20477 17183;17184 17183 2 0 3127900 0 GPPAPAPEVEELAR NAQAACAPRCPAPPRGPPAPAPEVEELARR RGPPAPAPEVEELARRLGEAWRGAVRGYQE R G P A R R 3 1 0 0 0 0 3 1 0 0 1 0 0 0 4 0 0 0 0 1 0 0 14 0 1431.7358 P48681 P48681 167 180 NES Nestin yes yes 2 0.00039358 133.07 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 30174000 0 2378700 27795000 4871 846 5075 20478;20479;20480 17185;17186 17186 2 0 1162700 6197700 GPPDFSSDEEREPTPVLGSGAAAAGR TARNRPPLPAGTNSKGPPDFSSDEEREPTP EPTPVLGSGAAAAGRSRAAVGRKATKKTDK K G P G R S 4 2 0 2 0 0 3 4 0 0 1 0 0 1 4 3 1 0 0 1 0 0 26 1 2569.2045 P42166;P42167 P42166 61 86 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 3 1.2881E-44 192.16 By MS/MS 4 1.41 1 1 1 1 1 5 135500000 0 0 135500000 4872 798;799 5076 20481;20482;20483;20484;20485 17187;17188;17189 17189 2 0 0 22725000 GPPPPPGDENR TPTVLPMGAPVPRPRGPPPPPGDENREMDD PRPRGPPPPPGDENREMDDPSVGPKIPQAL R G P N R E 0 1 1 1 0 0 1 2 0 0 0 0 0 0 5 0 0 0 0 0 0 0 11 0 1131.5309 Q13435 Q13435 248 258 SF3B2 Splicing factor 3B subunit 2 yes yes 2 0.00094736 114.89 By matching By MS/MS 1.5 0.5 1 1 1 1 2901100 1290300 1610800 0 4873 1248 5077 20486;20487 17190 17190 1 1290300 725380 0 GPPPPPTASEPTRR RRKLIVAYVDDLDRRGPPPPPTASEPTRRS RGPPPPPTASEPTRRSTK____________ R G P R R S 1 2 0 0 0 0 1 1 0 0 0 0 0 0 6 1 2 0 0 0 0 0 14 1 1458.7579 O14776 O14776 1082 1095 TCERG1 Transcription elongation regulator 1 yes yes 3 0.019947 54.524 By MS/MS 2 0.816 1 1 1 3 3816700 0 0 3816700 4874 145 5078 20488;20489;20490 17191 17191 1 0 0 811280 GPPPSWGR VRVELSNGEKRSRNRGPPPSWGRRPRDDYR EKRSRNRGPPPSWGRRPRDDYRRRSPPPRR R G P G R R 0 1 0 0 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 8 0 852.42424 P84103 P84103 91 98 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 0.00079071 124.89 By matching By MS/MS By MS/MS 7 0 3 1 1 1 49950000 2345000 20574000 27031000 4875 1113 5079 20491;20492;20493 17192;17193 17193 2 5054000 11813000 4796500 GPPPTDPYGRPPPYDR FPPPTNSGMPTSDSRGPPPTDPYGRPPPYD PPPTDPYGRPPPYDRGDYGPPGREMDTART R G P D R G 0 2 0 2 0 0 0 2 0 0 0 0 0 0 7 0 1 0 2 0 0 0 16 1 1780.8533 Q16630 Q16630 377 392 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes yes 3 0.0026909 70.26 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 45132000 0 19502000 25629000 4876 1393 5080 20494;20495;20496;20497 17194;17195;17196;17197;17198;17199 17198 6 0 7546800 4866200 GPQGPGGGGINVQEILTSIMGSPNSHPSEELLK PPVLANLMGSMGAGKGPQGPGGGGINVQEI IMGSPNSHPSEELLKQPDYSDKIKQMLVPH K G P L K Q 0 0 2 0 0 2 3 7 1 3 3 1 1 0 4 4 1 0 0 1 0 0 33 0 3299.6456 Q96QC0 Q96QC0 570 602 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 5.2235E-21 96.724 By MS/MS 2 0 1 1 4227500 0 0 4227500 4877 1823 5081 20498 17200 17200 1 0 0 955330 GPQGVEDGDRPQPSSK CFGAARLLYPRFQSRGPQGVEDGDRPQPSS PQGVEDGDRPQPSSKTPRIPKIYTKTGDKG R G P S K T 0 1 0 2 0 2 1 3 0 0 0 1 0 0 3 2 0 0 0 1 0 0 16 1 1652.7754 Q96EY8 Q96EY8 36 51 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes yes 3 0.0066924 60.918 By MS/MS 7 0 1 1 1320500 0 0 1320500 4878 1781 5082 20499 17201 17201 1 0 0 234310 GPQLVCTGSDDGTVK KGHTSFVNSCYPARRGPQLVCTGSDDGTVK GPQLVCTGSDDGTVKLWDIRKKAAIQTFQN R G P V K L 0 0 0 2 1 1 0 3 0 0 1 1 0 0 1 1 2 0 0 2 0 0 15 0 1532.7141 Q96DI7 Q96DI7 163 177 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2 0.00051562 142.08 By MS/MS 5 0 1 1 10469000 0 0 10469000 4879 1767 5083 20500 17202 17202 1 0 0 1460200 GPQPPTVSPIR PFEKAAFQKQNDTPKGPQPPTVSPIRSSRP DTPKGPQPPTVSPIRSSRPPPAKRKKSQSR K G P I R S 0 1 0 0 0 1 0 1 0 1 0 0 0 0 4 1 1 0 0 1 0 0 11 0 1147.635 P46087 P46087 779 789 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00351 105.1 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 39337000 0 11158000 28179000 4880 824 5084 20501;20502;20503;20504 17203;17204;17205 17203 3 0 5024500 6229100 GPSAAGEQEPDKESGASVDEVAR EEAAKKKRRKKKKSKGPSAAGEQEPDKESG EPDKESGASVDEVARQLERSALEDKERDED K G P A R Q 4 1 0 2 0 1 4 3 0 0 0 1 0 0 2 3 0 0 0 2 0 0 23 1 2285.0408 P50579 P50579 47 69 METAP2 Methionine aminopeptidase 2 yes yes 3 5.7367E-21 150.83 By MS/MS By MS/MS 4 0 2 1 1 15066000 0 3122200 11944000 4881 881 5085 20505;20506 17206;17207 17207 2 0 1036100 1950800 GPSAGGGPGSGTSPQVEWTAR GPVPEAAQPFLFTPRGPSAGGGPGSGTSPQ GPGSGTSPQVEWTARRLVWVPSELHGFEAA R G P A R R 2 1 0 0 0 1 1 6 0 0 0 0 0 0 3 3 2 1 0 1 0 0 21 0 1954.9133 Q7Z406 Q7Z406 33 53 MYH14 Myosin-14 yes yes 2 7.095E-22 177.88 By MS/MS By MS/MS 1 0 2 1 1 14432000 0 10087000 4345300 4882 1531 5086 20507;20508 17208;17209 17208 2 0 4930200 936260 GPSGGGEEPALSQYQR LWDGEDSSFLVVRLRGPSGGGEEPALSQYQ PSGGGEEPALSQYQRLLCINPPLFEIYQVL R G P Q R L 1 1 0 0 0 2 2 4 0 0 1 0 0 0 2 2 0 0 1 0 0 0 16 0 1631.754 Q99567 Q99567 85 100 NUP88 Nuclear pore complex protein Nup88 yes yes 2 2.3519E-18 186.36 By MS/MS 3 0 1 1 8172300 0 0 8172300 4883 1850 5087 20509 17210;17211 17211 2 0 0 1585000 GPSGLLVYQGK QYLESMQIGDTIEFRGPSGLLVYQGKGKFA IEFRGPSGLLVYQGKGKFAIRPDKKSNPII R G P G K G 0 0 0 0 0 1 0 3 0 0 2 1 0 0 1 1 0 0 1 1 0 0 11 0 1117.6132 P00387 P00387 144 154 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes yes 2 0.00034706 121.05 By matching By MS/MS 6.33 0.471 2 1 1 2 11517000 2127800 0 9389600 4884 358 5088 20510;20511;20512 17212 17212 1 2833100 0 1482700 GPSLNPVLDYDHGSR WEEKRHFRRDSFDDRGPSLNPVLDYDHGSR GPSLNPVLDYDHGSRSQESGYYDRMDYEDD R G P S R S 0 1 1 2 0 0 0 2 1 0 2 0 0 0 2 2 0 0 1 1 0 0 15 0 1625.7798 P43243 P43243 193 207 MATR3 Matrin-3 yes yes 3 0.002148 75.02 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 2 3 46233000 0 27045000 19188000 4885 812 5089 20513;20514;20515;20516;20517 17213;17214 17214 2 0 12090000 3481000 GPSPFSPVQLHQLR ALIPGDPQAMSQPNRGPSPFSPVQLHQLRA RGPSPFSPVQLHQLRAQILAYKMLARGQPL R G P L R A 0 1 0 0 0 2 0 1 1 0 2 0 0 1 3 2 0 0 0 1 0 0 14 0 1561.8365 P51531 P51531 170 183 SMARCA2 Probable global transcription activator SNF2L2 yes yes 3 0.03649 46.704 By MS/MS By matching 1.5 0.5 1 1 1 1 6234300 0 4587500 1646800 4886 893 5090 20518;20519 17215 17215 1 0 2242300 372150 GPSSVEDIK QESFKKQEKTPKTPKGPSSVEDIKAKMQAS TPKTPKGPSSVEDIKAKMQASIEKGGSLPK K G P I K A 0 0 0 1 0 0 1 1 0 1 0 1 0 0 1 2 0 0 0 1 0 0 9 0 930.46583 P06748 P06748 240 248 NPM1 Nucleophosmin yes yes 2 0.0005802 116.73 By MS/MS By MS/MS By MS/MS 5.79 2.76 1 1 2 2 3 1 1 1 2 1 8 5 1507700000 54702000 476020000 976940000 4887 449 5091 20520;20521;20522;20523;20524;20525;20526;20527;20528;20529;20530;20531;20532;20533 17216;17217;17218;17219;17220;17221;17222;17223;17224;17225;17226 17219 11 72836000 208570000 167990000 GPSSVEDIKAK QESFKKQEKTPKTPKGPSSVEDIKAKMQAS KTPKGPSSVEDIKAKMQASIEKGGSLPKVE K G P A K M 1 0 0 1 0 0 1 1 0 1 0 2 0 0 1 2 0 0 0 1 0 0 11 1 1129.5979 P06748 P06748 240 250 NPM1 Nucleophosmin yes yes 2 0.0020941 134.25 By MS/MS 6 0 1 1 21273000 0 21273000 0 4888 449 5092 20534 17227 17227 1 0 7363800 0 GPSVFPLAPCSR ______________________________ STKGPSVFPLAPCSRSTSGGTAALGCLVKD K G P S R S 1 1 0 0 1 0 0 1 0 0 1 0 0 1 3 2 0 0 0 1 0 0 12 0 1286.6441 P01859;P01860;P01861 P01860 5 16 IGHG2;IGHG3;IGHG4 Ig gamma-2 chain C region;Ig gamma-3 chain C region;Ig gamma-4 chain C region no no 2 6.5226E-08 166.07 By MS/MS 9.5 0.5 1 1 2 58491000 58491000 0 0 4889 383;382;384 5093 20535;20536 17228;17229;17230 17228 3 35260000 0 0 GPSVFPLAPSSK WGQGTLVTVSSASTKGPSVFPLAPSSKSTS STKGPSVFPLAPSSKSTSGGTAALGCLVKD K G P S K S 1 0 0 0 0 0 0 1 0 0 1 1 0 1 3 3 0 0 0 1 0 0 12 0 1185.6394 P0DOX5;P01857 P0DOX5 124 135 IGHG1 Ig gamma-1 chain C region yes no 2 9.3651E-05 140.49 By MS/MS By matching 5.7 3.1 1 1 1 1 1 1 1 1 2 9 1 546080000 545370000 0 709730 4890 381 5094 20537;20538;20539;20540;20541;20542;20543;20544;20545;20546 17231;17232;17233;17234;17235;17236;17237;17238 17231 8 507110000 0 1552200 GPSWDPFR ______________________________ VPFSLLRGPSWDPFRDWYPHSRLFDQAFGL R G P F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 1 2 1 0 1 0 0 0 0 8 0 960.44537 P04792 P04792 13 20 HSPB1 Heat shock protein beta-1 yes yes 2 3.4389E-05 151.51 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 63511000 0 2207100 61304000 4891 417 5095 20547;20548;20549 17239;17240;17241;17242 17240 4 0 1267300 10661000 GPSWDPFRDWYPHSR ______________________________ GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW R G P S R L 0 2 0 2 0 0 0 1 1 0 0 0 0 1 3 2 0 2 1 0 0 0 15 1 1901.8598 P04792 P04792 13 27 HSPB1 Heat shock protein beta-1 yes yes 3;4 6.6592E-05 123.76 By MS/MS 6.67 0.471 1 2 3 43439000 0 0 43439000 4892 417 5096 20550;20551;20552 17243;17244;17245 17245 3 0 0 7562800 GPSYGEDVSNTTTAQK VPGAHPVPVYAFSIKGPSYGEDVSNTTTAQ PSYGEDVSNTTTAQKRKCSQTQCPRKVIKM K G P Q K R 1 0 1 1 0 1 1 2 0 0 0 1 0 0 1 2 3 0 1 1 0 0 16 0 1653.7482 P29590 P29590 461 476 PML Protein PML yes yes 2 9.0451E-05 105.65 By MS/MS 3 0 1 1 2139100 0 0 2139100 4893 701 5097 20553 17246 17246 1 0 0 414890 GPTEAVGYFLYNLIDSMSDSEVQAK TELLYKDGRYCQEPRGPTEAVGYFLYNLID YNLIDSMSDSEVQAKEEHLRQYFHQLEKMN R G P A K E 2 0 1 2 0 1 2 2 0 1 2 1 1 1 1 3 1 0 2 2 0 0 25 0 2733.2844 P42704 P42704 576 600 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.0006202 50.827 By MS/MS 2 0 1 1 2637200 0 0 2637200 4894 808 5098 20554 17247 17247 1 0 0 595970 GPTISLTQIV MILSLKTMDRFDDHKGPTISLTQIV_____ FDDHKGPTISLTQIV_______________ K G P I V - 0 0 0 0 0 1 0 1 0 2 1 0 0 0 1 1 2 0 0 1 0 0 10 0 1027.5914 Q15904 Q15904 461 470 ATP6AP1 V-type proton ATPase subunit S1 yes yes 2 0.0066945 94.262 By MS/MS 5 0 1 1 4141300 4141300 0 0 4895 1382 5099 20555 17248 17248 1 3317700 0 0 GPTPFNQNQLHQLR PLDGADPQALGQQNRGPTPFNQNQLHQLRA RGPTPFNQNQLHQLRAQIMAYKMLARGQPL R G P L R A 0 1 2 0 0 3 0 1 1 0 2 0 0 1 2 0 1 0 0 0 0 0 14 0 1648.8434 P51532 P51532 168 181 SMARCA4 Transcription activator BRG1 yes yes 3 3.008E-06 162.68 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 58892000 2931100 20089000 35872000 4896 894 5100 20556;20557;20558;20559;20560 17249;17250 17250 2 2931100 9795000 7685100 GPTVSNIR EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV LLIDFFRGPTVSNIRLAGLEYVLHFTALNG R G P I R L 0 1 1 0 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 8 0 842.46102 Q9H7B2 Q9H7B2 169 176 RPF2 Ribosome production factor 2 homolog yes yes 2 0.0044238 101.69 By MS/MS By matching 6.33 0.471 2 1 1 2 9350200 0 4537000 4813200 4897 1991 5101 20561;20562;20563 17251 17251 1 0 1570500 741400 GPVFAPPYEPLPENVK ERYPEGIKWKFLEHKGPVFAPPYEPLPENV PVFAPPYEPLPENVKFYYDGKVMKLSPKAE K G P V K F 1 0 1 0 0 0 2 1 0 0 1 1 0 1 5 0 0 0 1 2 0 0 16 0 1752.9087 P11387 P11387 224 239 TOP1 DNA topoisomerase 1 yes yes 2;3 2.6826E-05 150.09 By MS/MS By MS/MS 2.3 0.9 2 4 3 1 4 6 463000000 0 96277000 366720000 4898 523 5102 20564;20565;20566;20567;20568;20569;20570;20571;20572;20573 17252;17253;17254;17255;17256;17257;17258;17259;17260;17261;17262;17263;17264 17259 13 0 42475000 76999000 GPVGLEGLLTTK LGAEVGISTSRIHARGPVGLEGLLTTKWLL HARGPVGLEGLLTTKWLLRGKDHVVSDFSE R G P T K W 0 0 0 0 0 0 1 3 0 0 3 1 0 0 1 0 2 0 0 1 0 0 12 0 1183.6812 P54886 P54886 750 761 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.0044463 94.409 By matching By MS/MS By MS/MS 5.6 3.2 3 1 1 1 2 2 17394000 2043100 3454900 11896000 4899 932 5103 20574;20575;20576;20577;20578 17265;17266;17267 17265 3 2357300 1651600 3688500 GPVKPTGGPGGGGTQTQQQMNQLK NPVIMGLSSQNGQLRGPVKPTGGPGGGGTQ GGGGTQTQQQMNQLKNTNTINNGTQQQAQS R G P L K N 0 0 1 0 0 5 0 7 0 0 1 2 1 0 3 0 3 0 0 1 0 0 24 1 2365.1808 P26196 P26196 23 46 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 3 3.1857E-21 131.56 By MS/MS By MS/MS 3.8 0.4 1 4 3 2 86611000 0 51328000 35283000 4900 665 5104;5105 20579;20580;20581;20582;20583 17268;17269;17270;17271 17270 294 4 0 17231000 5762900 GPVLEALVAR RLIILDEIHLLHDDRGPVLEALVARAIRNI LHDDRGPVLEALVARAIRNIEMTQEDVRLI R G P A R A 2 1 0 0 0 0 1 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 10 0 1023.6077 O75643 O75643 625 634 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00047348 136.16 By MS/MS By MS/MS 1 0 2 1 1 14946000 0 6479700 8466200 4901 277 5106 20584;20585 17272;17273 17273 2 0 3167200 1824200 GPVLEVIVSR TILIIDEIHLLGEERGPVLEVIVSRTNFIS LGEERGPVLEVIVSRTNFISSHTEKPVRIV R G P S R T 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 0 3 0 0 10 0 1067.6339 Q8N3C0 Q8N3C0 1463 1472 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.028028 78.516 By matching By MS/MS 1 0 2 1 1 3290900 1676200 0 1614700 4902 1602 5107 20586;20587 17274 17274 1 1676200 0 347900 GPVPAKPTVLFEK SLLAQLGITPLPLSRGPVPAKPTVLFEKMG SRGPVPAKPTVLFEKMGVGRLDMYVLHPPS R G P E K M 1 0 0 0 0 0 1 1 0 0 1 2 0 1 3 0 1 0 0 2 0 0 13 1 1381.7969 Q66K74 Q66K74 375 387 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 3 0.024877 58.487 By MS/MS 2 0 1 1 11170000 0 0 11170000 4903 1465 5108 20588 17275 17275 1 0 0 2524200 GPVTIPYPLFQSHVEDLYVEGLPEGIPFR EELFERKYAQAIKAKGPVTIPYPLFQSHVE EDLYVEGLPEGIPFRRPSTYGIPRLERILL K G P F R R 0 1 0 1 0 1 3 3 1 2 3 0 0 2 5 1 1 0 2 3 0 0 29 0 3268.6809 P78347 P78347 381 409 GTF2I General transcription factor II-I yes yes 3;4 7.7354E-39 132.69 By MS/MS 2 0 2 2 10949000 0 0 10949000 4904 1085 5109 20589;20590 17276;17277 17276 2 0 0 2474200 GPVTNAAILLAPVSMLSSDFRPSLPLPHFNK WDVQSKQCIRTVALKGPVTNAAILLAPVSM SSDFRPSLPLPHFNKHLLGAEHGDEPRHGG K G P N K H 3 1 2 1 0 0 0 1 1 1 5 1 1 2 5 4 1 0 0 2 0 0 31 1 3288.7693 Q9BV38 Q9BV38 311 341 WDR18 WD repeat-containing protein 18 yes yes 4 2.7677E-09 60.641 By MS/MS 4.5 0.5 1 1 2 13118000 0 0 13118000 4905 1910 5110 20591;20592 17278;17279;17280 17279 3 0 0 1971300 GPVYIGELPQDFLR ______________________________ RGPVYIGELPQDFLRITPTQQQRQVQLDAQ R G P L R I 0 1 0 1 0 1 1 2 0 1 2 0 0 1 2 0 0 0 1 1 0 0 14 0 1602.8406 Q9H0E2 Q9H0E2 10 23 TOLLIP Toll-interacting protein yes yes 2 0.001209 108.47 By MS/MS By matching 6 0 2 1 1 9598800 0 3753200 5845600 4906 1961 5111 20593;20594 17281 17281 1 0 1299200 874560 GPYESGSGHSSGLGHQESR SYGPHGYGSGRSSSRGPYESGSGHSSGLGH SGSGHSSGLGHQESRSGQSSGYGQHGSSSG R G P S R S 0 1 0 0 0 1 2 5 2 0 1 0 0 0 1 5 0 0 1 0 0 0 19 0 1927.8409 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 572 590 HRNR Hornerin yes no 3;4 2.9818E-09 112.56 By MS/MS By MS/MS 5.26 3.1 4 2 2 2 2 2 3 1 2 3 4 19 64675000 0 3955900 60720000 + 4907 96 5112 20595;20596;20597;20598;20599;20600;20601;20602;20603;20604;20605;20606;20607;20608;20609;20610;20611;20612;20613;20614;20615;20616;20617 17282;17283;17284;17285;17286;17287;17288;17289;17290;17291;17292;17293;17294;17295;17296;17297;17298;17299;17300;17301 17290 20 0 3296200 33437000 GPYESGSGHSSGLGHR SYGPYRSGSGWSSSRGPYESGSGHSSGLGH PYESGSGHSSGLGHRESRSGQSSGYGQHGS R G P H R E 0 1 0 0 0 0 1 5 2 0 1 0 0 0 1 4 0 0 1 0 0 0 16 0 1583.7077 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1038 1053 HRNR Hornerin yes no 2;3 9.3895E-06 112.17 By MS/MS By MS/MS 5.2 2.93 2 2 1 2 2 3 1 2 6 9 57902000 0 13637000 44265000 + 4908 96 5113 20618;20619;20620;20621;20622;20623;20624;20625;20626;20627;20628;20629;20630;20631;20632 17302;17303;17304;17305;17306;17307;17308;17309;17310;17311;17312;17313;17314;17315;17316 17313 15 0 6461100 37354000 GPYPPGPLAPPQPFGPGFVPPPPPPPYGPGR LAACFTPGESQRGPRGPYPPGPLAPPQPFG GFVPPPPPPPYGPGRIPPPPPAPYGPGIFP R G P G R I 1 1 0 0 0 1 0 6 0 0 1 0 0 2 16 0 0 0 2 1 0 0 31 0 3100.5963 P02814 P02814 28 58 SMR3B Submaxillary gland androgen-regulated protein 3B;Peptide P-A;Peptide D1A yes yes 3 0.00020801 44.555 By MS/MS 8.5 0.5 1 1 2 3992900 3992900 0 0 4909 404 5114 20633;20634 17317;17318 17317 2 2664400 0 0 GQAAVQQLQAEGLSPR LFSGDVVLTARDVTRGQAAVQQLQAEGLSP QAAVQQLQAEGLSPRFHQLDIDDLQSIRAL R G Q P R F 3 1 0 0 0 4 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 16 0 1651.8642 P16152;O75828 P16152 43 58 CBR1;CBR3 Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3 yes no 2 2.8193E-45 155.02 By MS/MS By MS/MS 6 0 2 1 1 3356700 0 3356700 0 4910 286 5115 20635;20636 17319;17320 17320 2 0 1162000 0 GQAFVIFK GQILDILVSRSLKMRGQAFVIFKEVSSATN SRSLKMRGQAFVIFKEVSSATNALRSMQGF R G Q F K E 1 0 0 0 0 1 0 1 0 1 0 1 0 2 0 0 0 0 0 1 0 0 8 0 908.51199 P09012;P08579 P09012 53 60 SNRPA;SNRPB2 U1 small nuclear ribonucleoprotein A;U2 small nuclear ribonucleoprotein B no no 2 0.058265 70.912 By MS/MS 6 0 1 1 30299000 0 30299000 0 4911 481;473 5116 20637 17321 17321 1 0 10488000 0 GQAVTLLPFFTSLTGGSLEELR YISLLADTKLDLHLKGQAVTLLPFFTSLTG PFFTSLTGGSLEELRRVLEQLIVAHFPMQS K G Q L R R 1 1 0 0 0 1 2 3 0 0 5 0 0 2 1 2 3 0 0 1 0 0 22 0 2335.2424 P78527 P78527 1690 1711 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00017524 68.369 By MS/MS 1 0 1 1 1196000 0 0 1196000 4912 1089 5117 20638 17322 17322 1 0 0 257690 GQAVTLLPFFTSLTGGSLEELRR YISLLADTKLDLHLKGQAVTLLPFFTSLTG FFTSLTGGSLEELRRVLEQLIVAHFPMQSR K G Q R R V 1 2 0 0 0 1 2 3 0 0 5 0 0 2 1 2 3 0 0 1 0 0 23 1 2491.3435 P78527 P78527 1690 1712 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 2.4892E-20 130.07 By MS/MS 1 0 1 1 12704000 0 0 12704000 4913 1089 5118 20639 17323 17323 1 0 0 2737400 GQDIEYIEIR EINKIIRDLWRSTYRGQDIEYIEIRSDADE RSTYRGQDIEYIEIRSDADENVSASDKRRN R G Q I R S 0 1 0 1 0 1 2 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 10 0 1234.6194 Q92878 Q92878 1157 1166 RAD50 DNA repair protein RAD50 yes yes 2 0.00061823 115.7 By MS/MS 1.5 0.5 1 1 2 20675000 0 0 20675000 4914 1726 5119 20640;20641 17324;17325 17325 2 0 0 4568600 GQFAEHLLGAGFVSSR YFLSSNTLQMLHNMKGQFAEHLLGAGFVSS QFAEHLLGAGFVSSRNPKDPESNINSDNEK K G Q S R N 2 1 0 0 0 1 1 3 1 0 2 0 0 2 0 2 0 0 0 1 0 0 16 0 1674.8478 Q9H2U1 Q9H2U1 799 814 DHX36 ATP-dependent RNA helicase DHX36 yes yes 3 0.0050925 61.524 By MS/MS 2 0 1 1 5043900 0 5043900 0 4915 1976 5120 20642 17326 17326 1 0 2271300 0 GQFSTDELVAEVEK DCSEDVIKNLILVVRGQFSTDELVAEVEKR RGQFSTDELVAEVEKRNRLKLLLPWLEARI R G Q E K R 1 0 0 1 0 1 3 1 0 0 1 1 0 1 0 1 1 0 0 2 0 0 14 0 1550.7464 Q00610;P53675 Q00610 838 851 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.00039253 127.87 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 52878000 0 10577000 42301000 4916 1125 5121 20643;20644;20645;20646;20647 17327;17328;17329;17330 17329 4 0 4987900 9303700 GQFSTDELVAEVEKR DCSEDVIKNLILVVRGQFSTDELVAEVEKR GQFSTDELVAEVEKRNRLKLLLPWLEARIH R G Q K R N 1 1 0 1 0 1 3 1 0 0 1 1 0 1 0 1 1 0 0 2 0 0 15 1 1706.8475 Q00610;P53675 Q00610 838 852 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 0.00041437 149.93 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 75068000 0 6282900 68785000 4917 1125 5122 20648;20649;20650;20651;20652 17331;17332;17333;17334 17333 4 0 3071000 14908000 GQGNWGPPGGEMTFSIPTHK PGGPGMPPGGRGRGRGQGNWGPPGGEMTFS GPPGGEMTFSIPTHKCGLVIGRGGENVKAI R G Q H K C 0 0 1 0 0 1 1 5 1 1 0 1 1 1 3 1 2 1 0 0 0 0 20 0 2096.9738 Q92945 Q92945 416 435 KHSRP Far upstream element-binding protein 2 yes yes 3 0.047991 30.823 By MS/MS 3 0 1 1 4036700 0 4036700 0 4918 1733 5123 20653 17335 17335 1 0 1720900 0 GQGSVSASVTEGQQNEQ ESVDGQWVCISDVNKGQGSVSASVTEGQQN GSVSASVTEGQQNEQ_______________ K G Q E Q - 1 0 1 0 0 4 2 3 0 0 0 0 0 0 0 3 1 0 0 2 0 0 17 0 1704.7551 P55735 P55735 306 322 SEC13 Protein SEC13 homolog yes yes 2 0.0091924 68.436 By MS/MS 6 0 1 1 5330100 5330100 0 0 4919 942 5124 20654 17336 17336 1 7097100 0 0 GQGTLSVVTMYHAK ETKENEGFTVTAEGKGQGTLSVVTMYHAKA KGQGTLSVVTMYHAKAKDQLTCNKFDLKVT K G Q A K A 1 0 0 0 0 1 0 2 1 0 1 1 1 0 0 1 2 0 1 2 0 0 14 0 1490.7551 P01024 P01024 1338 1351 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.0004604 120.77 By MS/MS 9.5 0.5 1 1 2 5410800 5410800 0 0 4920 371 5125 20655;20656 17337;17338 17337 2 4394400 0 0 GQHEPSKPPPAGETVTGGFGAK QPLLELTPRAPGSPRGQHEPSKPPPAGETV PPPAGETVTGGFGAKKRKGSSSQAPASKKL R G Q A K K 2 0 0 0 0 1 2 5 1 0 0 2 0 1 4 1 2 0 0 1 0 0 22 1 2148.06 Q9H6F5 Q9H6F5 191 212 CCDC86 Coiled-coil domain-containing protein 86 yes yes 3;4 2.2445E-09 93.73 By MS/MS By MS/MS 4 0 4 2 2 64618000 0 29819000 34800000 4921 1986 5126 20657;20658;20659;20660 17339;17340;17341;17342;17343;17344 17341 6 0 9895800 5683900 GQHVPGSPFQFTVGPLGEGGAHK VPAEMGTHTVSVKYKGQHVPGSPFQFTVGP FQFTVGPLGEGGAHKVRAGGPGLERAEAGV K G Q H K V 1 0 0 0 0 2 1 6 2 0 1 1 0 2 3 1 1 0 0 2 0 0 23 0 2303.1447 P21333;Q14315 P21333 2218 2240 FLNA;FLNC Filamin-A;Filamin-C no no 3;4 1.2867E-07 86.761 By MS/MS 1.33 0.471 2 1 3 24623000 0 24623000 0 4922 623;1298 5127 20661;20662;20663 17345;17346;17347 17345 2 0 11919000 0 GQIEEQKEMMEK ALRHYEDFPKLWMMKGQIEEQKEMMEKARE MMKGQIEEQKEMMEKAREAYNQGLKKCPHS K G Q E K A 0 0 0 0 0 2 4 1 0 1 0 2 2 0 0 0 0 0 0 0 0 0 12 1 1478.6745 O94906 O94906 716 727 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 2.9875E-05 161.67 By MS/MS By MS/MS 2 0 2 1 1 5387400 0 2474000 2913400 4923 305 5128 20664;20665 17348;17349 17349 2 0 1114100 658370 GQIIGNFQAFDEDTGLPAHAR VISIYVSESMDRSSKGQIIGNFQAFDEDTG FQAFDEDTGLPAHARYVKLEDRDNWISVDS K G Q A R Y 3 1 1 2 0 2 1 3 1 2 1 0 0 2 1 0 1 0 0 0 0 0 21 0 2256.0923 Q14126 Q14126 407 427 DSG2 Desmoglein-2 yes yes 3 0.049232 34.265 By MS/MS 2 0 1 1 5299700 0 0 5299700 4924 1282 5129 20666 17350 17350 0 0 0 1197600 GQILMPNIGYGSNK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK KGQILMPNIGYGSNKKTKHMLPSGFRKFLV K G Q N K K 0 0 2 0 0 1 0 3 0 2 1 1 1 0 1 1 0 0 1 0 0 0 14 0 1490.7551 P62910 P62910 51 64 RPL32 60S ribosomal protein L32 yes yes 2 0.0016808 105.03 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 22873000 0 14611000 8261300 4925 1050 5130;5131 20667;20668;20669 17351;17352;17353 17353 505 3 0 7497200 1266500 GQILMPNIGYGSNKK RKPRGIDNRVRRRFKGQILMPNIGYGSNKK GQILMPNIGYGSNKKTKHMLPSGFRKFLVH K G Q K K T 0 0 2 0 0 1 0 3 0 2 1 2 1 0 1 1 0 0 1 0 0 0 15 1 1618.8501 P62910 P62910 51 65 RPL32 60S ribosomal protein L32 yes yes 2;3 0.00050142 126.76 By matching By MS/MS By MS/MS 7.33 0.471 4 2 1 2 3 52144000 1987300 26208000 23950000 4926 1050 5132 20670;20671;20672;20673;20674;20675 17354;17355;17356;17357 17355 4 4283000 15049000 3784500 GQLEANLLQVLEK QGRLQEELRKVSQERGQLEANLLQVLEKVE ERGQLEANLLQVLEKVEEFRIRYEDEISKR R G Q E K V 1 0 1 0 0 2 2 1 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1453.814 Q6KB66;CON__Q6KB66-1;CON__Q0VBK2 Q6KB66 151 163 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.00029231 135.66 By MS/MS By MS/MS 6.33 2 1 1 1 2 1 1 2 6 3 20245000 13398000 0 6846600 + 4927 93 5133 20676;20677;20678;20679;20680;20681;20682;20683;20684 17358;17359;17360;17361;17362 17360 5 10882000 0 1454200 GQLEQITGK RPQLLKNALQRAVERGQLEQITGKGASGTF QRAVERGQLEQITGKGASGTFQLKKSGEKP R G Q G K G 0 0 0 0 0 2 1 2 0 1 1 1 0 0 0 0 1 0 0 0 0 0 9 0 972.52401 Q5SSJ5 Q5SSJ5 312 320 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.0070215 93.429 By MS/MS By MS/MS 4 1.1 2 2 1 2 3 93710000 0 26630000 67080000 4928 1445 5134 20685;20686;20687;20688;20689 17363;17364;17365 17363 3 0 10930000 12601000 GQLGEAEGENLR EQSERKLQERCSELKGQLGEAEGENLRLQG ELKGQLGEAEGENLRLQGLVRQKERALEDA K G Q L R L 1 1 1 0 0 1 3 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1271.6106 Q9UPN4 Q9UPN4 956 967 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.0055473 101.97 By MS/MS 2 0 1 1 5380300 0 0 5380300 4929 2215 5135 20690 17366 17366 1 0 0 1215800 GQLPDYTSPVVLPYSR IWDYLKLVRIYTKPKGQLPDYTSPVVLPYS QLPDYTSPVVLPYSRTTVEDFCMKIHKNLI K G Q S R T 0 1 0 1 0 1 0 1 0 0 2 0 0 0 3 2 1 0 2 2 0 0 16 0 1790.9203 Q9Y295 Q9Y295 300 315 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 5.2637E-05 111.31 By matching By MS/MS 5.33 0.471 2 1 1 2 30047000 4056500 25990000 0 4930 2239 5136 20691;20692;20693 17367;17368 17367 2 3249800 7158600 0 GQLSPFISDALVLR LNLGLPEWVLVALAKGQLSPFISDALVLRR KGQLSPFISDALVLRRTILPTQVENMQQPN K G Q L R R 1 1 0 1 0 1 0 1 0 1 3 0 0 1 1 2 0 0 0 1 0 0 14 0 1514.8457 Q2TB18 Q2TB18 336 349 ASTE1 Protein asteroid homolog 1 yes yes 2 0.0033863 94.767 By MS/MS By matching 4 0.816 1 1 1 2 1 4063000 0 2327700 1735400 4931 1408 5137 20694;20695;20696 17369 17369 1 0 895220 242050 GQMQKPFEDASFALR CSSAKARGDLGAFSRGQMQKPFEDASFALR GQMQKPFEDASFALRTGEMSGPVFTDSGIH R G Q L R T 2 1 0 1 0 2 1 1 0 0 1 1 1 2 1 1 0 0 0 0 0 0 15 1 1723.8352 Q13526 Q13526 128 142 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 3 9.6981E-08 91.812 By MS/MS 8 0 1 1 0 0 0 0 4932 1256 5138 20697 17370 17370 1 0 0 0 GQNFQVLMIMNK HHTDKFSSQELILRRGQNFQVLMIMNKGLG LRRGQNFQVLMIMNKGLGSNERLEFIVSTG R G Q N K G 0 0 2 0 0 2 0 1 0 1 1 1 2 1 0 0 0 0 0 1 0 0 12 0 1421.7159 Q08188 Q08188 35 46 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.0010245 117.89 By MS/MS 8.5 1.12 1 1 1 1 4 8735200 8735200 0 0 4933 1181 5139 20698;20699;20700;20701 17371;17372 17371 2 10242000 0 0 GQNLLLTNLQTIQGILER VRLSQQRESLLAEQRGQNLLLTNLQTIQGI LLLTNLQTIQGILERSETETKQRLSSQIEK R G Q E R S 0 1 2 0 0 3 1 2 0 2 5 0 0 0 0 0 2 0 0 0 0 0 18 0 2023.1426 P12270 P12270 811 828 TPR Nucleoprotein TPR yes yes 2;3 2.3816E-40 212.95 By MS/MS 1 0 2 2 4005500 0 0 4005500 4934 536 5140 20702;20703 17373;17374 17374 2 0 0 863040 GQNPNATFGEVSK SAYALFFRDTQAAIKGQNPNATFGEVSKIV IKGQNPNATFGEVSKIVASMWDSLGEEQKQ K G Q S K I 1 0 2 0 0 1 1 2 0 0 0 1 0 1 1 1 1 0 0 1 0 0 13 0 1347.6419 O94842;O15405;O94900 O94842 243 255 TOX4;TOX3;TOX TOX high mobility group box family member 4;TOX high mobility group box family member 3;Thymocyte selection-associated high mobility group box protein TOX yes no 2 0.0080225 91.937 By MS/MS 3 0 1 1 6616800 0 0 6616800 4935 300 5141 20704 17375 17375 1 0 0 1283300 GQNVLLTHNAEVK LAHLHAHRVIHRDIKGQNVLLTHNAEVKLV IKGQNVLLTHNAEVKLVDFGVSAQVSRTNG K G Q V K L 1 0 2 0 0 1 1 1 1 0 2 1 0 0 0 0 1 0 0 2 0 0 13 0 1421.7627 Q7Z2Y5 Q7Z2Y5 180 192 NRK Nik-related protein kinase yes yes 2 0.00033019 140.45 By MS/MS 2.5 1.12 1 1 1 1 4 34712000 34712000 0 0 4936 1529 5142 20705;20706;20707;20708 17376;17377 17377 2 38149000 0 0 GQPIYIQFSNHK NTMVNYYTSVTPVLRGQPIYIQFSNHKELK VLRGQPIYIQFSNHKELKTDSSPNQARAQA R G Q H K E 0 0 1 0 0 2 0 1 1 2 0 1 0 1 1 1 0 0 1 0 0 0 12 0 1430.7306 P26599 P26599 123 134 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3 2.1305E-12 182.39 By MS/MS By MS/MS By MS/MS 3.92 2.08 4 3 4 6 1 3 3 1 1 14 10 1330900000 22333000 672240000 636290000 4937 671 5143 20709;20710;20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723;20724;20725;20726;20727;20728;20729;20730;20731;20732;20733 17378;17379;17380;17381;17382;17383;17384;17385;17386;17387;17388;17389;17390;17391;17392;17393;17394;17395;17396;17397;17398;17399;17400 17378 23 17424000 233150000 110350000 GQPLPDHLQMAVQGK HQLRAQIMAYKMLARGQPLPDHLQMAVQGK GQPLPDHLQMAVQGKRPMPGMQQQMPTLPP R G Q G K R 1 0 0 1 0 3 0 2 1 0 2 1 1 0 2 0 0 0 0 1 0 0 15 0 1617.8297 P51532 P51532 193 207 SMARCA4 Transcription activator BRG1 yes yes 2 0.00037284 146.5 By MS/MS 1.5 0.5 1 1 2 17824000 0 0 17824000 4938 894 5144 20734;20735 17401 17401 1 0 0 3872500 GQPLPPDLLQQAK MKRIIAHAQLLEQHRGQPLPPDLLQQAKCL HRGQPLPPDLLQQAKCLGFSDKQIALAVLS R G Q A K C 1 0 0 1 0 3 0 1 0 0 3 1 0 0 3 0 0 0 0 0 0 0 13 0 1403.7773 P27708 P27708 855 867 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.010841 87.298 By matching By MS/MS 1 0 2 1 1 6936300 414390 6522000 0 4939 681 5145 20736;20737 17402 17402 1 414390 3187800 0 GQQELLYVVPFVAK TDLDVKSLLLEAYVKGQQELLYVVPFVAKV KGQQELLYVVPFVAKVLESSIRSVVFRPPN K G Q A K V 1 0 0 0 0 2 1 1 0 0 2 1 0 1 1 0 0 0 1 3 0 0 14 0 1589.8817 A5YKK6 A5YKK6 1228 1241 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.044928 65.5 By MS/MS 1 0 1 1 918890 0 918890 0 4940 10 5146 20738 17403 17403 1 0 449140 0 GQQLVMMPNK GTVVLGKLESGSIFKGQQLVMMPNKHNVEV GSIFKGQQLVMMPNKHNVEVLGILSDDTET K G Q N K H 0 0 1 0 0 2 0 1 0 0 1 1 2 0 1 0 0 0 0 1 0 0 10 0 1144.5733 P15170;Q8IYD1 Q8IYD1 458 467 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B no no 2 0.0018594 107.66 By MS/MS 2.5 0.5 1 1 2 9160300 0 9160300 0 4941 568;1593 5147 20739;20740 17404 17404 1 0 4031800 0 GQSEDPGSLLSLFR FPDIPGAVSANMTVKGQSEDPGSLLSLFRR KGQSEDPGSLLSLFRRLSDQRSKERSLLHG K G Q F R R 0 1 0 1 0 1 1 2 0 0 3 0 0 1 1 3 0 0 0 0 0 0 14 0 1504.7522 P08195 P08195 511 524 SLC3A2 4F2 cell-surface antigen heavy chain yes yes 2 0.00041655 124.42 By matching By MS/MS 3 0 2 1 1 6309600 1107100 0 5202500 4942 468 5148 20741;20742 17405 17405 1 1277300 0 1009000 GQSLGYAFAEFQEHEHALK CRVMRDLKGVHGNMKGQSLGYAFAEFQEHE GYAFAEFQEHEHALKALRLINNNPEIFGPL K G Q L K A 3 0 0 0 0 2 3 2 2 0 2 1 0 2 0 1 0 0 1 0 0 0 19 0 2161.0229 Q9NW13 Q9NW13 537 555 RBM28 RNA-binding protein 28 yes yes 3 0.00013077 79.511 By MS/MS 2 0 1 1 12003000 0 0 12003000 4943 2075 5149 20743 17406 17406 1 0 0 2712400 GQSPAGDGSPEPPTPR RLLPTKNNVRSAWYRGQSPAGDGSPEPPTP QSPAGDGSPEPPTPRYNTWVLQDTVLESHL R G Q P R Y 1 1 0 1 0 1 1 3 0 0 0 0 0 0 5 2 1 0 0 0 0 0 16 0 1548.7168 Q9H6R4 Q9H6R4 281 296 NOL6 Nucleolar protein 6 yes yes 2 0.0034206 85.554 By MS/MS By matching 2.5 0.5 1 1 1 1 8269600 0 3130000 5139600 4944 1988 5150 20744;20745 17407 17407 1 0 1409500 996840 GQSSWGTGESFR GAGVAHSPPSTLVWKGQSSWGTGESFRTVL VWKGQSSWGTGESFRTVLVNADGEEVAMRT K G Q F R T 0 1 0 0 0 1 1 3 0 0 0 0 0 1 0 3 1 1 0 0 0 0 12 0 1297.5687 Q03252 Q03252 550 561 LMNB2 Lamin-B2 yes yes 2 5.4787E-46 225.66 By MS/MS By MS/MS By MS/MS 3 0 3 1 1 1 154910000 6767500 53237000 94904000 4945 1156 5151 20746;20747;20748 17408;17409;17410 17410 3 7808200 22695000 18407000 GQTGGDVNVEMDAAPGVDLSR AYLRKNHEEEMLALRGQTGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEQMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 1 0 0 3 0 0 21 0 2086.9589 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P08779 264 284 KRT16 Keratin, type I cytoskeletal 16 yes no 2 3.8762E-141 276.22 By MS/MS By MS/MS 5.53 2.5 2 1 2 4 3 1 1 2 1 13 4 137070000 109170000 0 27902000 + 4946 53 5152;5153 20749;20750;20751;20752;20753;20754;20755;20756;20757;20758;20759;20760;20761;20762;20763;20764;20765 17411;17412;17413;17414;17415;17416;17417;17418;17419;17420 17415 37 10 90915000 0 4497600 GQTHTLEDFQR CAGIAVASKTYNLKKGQTHTLEDFQRVLDV NLKKGQTHTLEDFQRVLDVNLMGTFNVIRL K G Q Q R V 0 1 0 1 0 2 1 1 1 0 1 0 0 1 0 0 2 0 0 0 0 0 11 0 1330.6266 Q99714 Q99714 106 116 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 3 0.030086 56.225 By MS/MS By MS/MS 7 0 2 1 1 15648000 0 6790800 8857200 4947 1859 5154 20766;20767 17421;17422 17422 2 0 3899300 1571600 GQVEVFALR SWLGEEPVAGVWSEKGQVEVFALRRLLQVV GVWSEKGQVEVFALRRLLQVVEEPQALAAF K G Q L R R 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1017.5607 Q9BQ67 Q9BQ67 173 181 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2 0.00042158 133.12 By matching By MS/MS By MS/MS 4.25 0.433 3 1 1 2 1 53780000 1138200 24067000 28575000 4948 1878 5155 20768;20769;20770;20771 17423;17424;17425 17423 3 888010 7986800 4667200 GQVEVFALRR SWLGEEPVAGVWSEKGQVEVFALRRLLQVV VWSEKGQVEVFALRRLLQVVEEPQALAAFL K G Q R R L 1 2 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 10 1 1173.6618 Q9BQ67 Q9BQ67 173 182 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2 0.0097659 96.668 By MS/MS 4 0 1 1 3969000 0 3969000 0 4949 1878 5156 20772 17426 17426 1 0 1317200 0 GQVEYLLK EEYVVEKVLDRRVVKGQVEYLLKWKGFSEE LDRRVVKGQVEYLLKWKGFSEEHNTWEPEK K G Q L K W 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 0 1 1 0 0 8 0 948.52803 P45973 P45973 33 40 CBX5 Chromobox protein homolog 5 yes yes 2 0.061956 69.998 By MS/MS 7 0 1 1 56837000 0 56837000 0 4950 820 5157 20773 17427 17427 1 0 32636000 0 GQVGGDVNVEMDAAPGVDLSR AYLKKNHEEEMNALRGQVGGDVNVEMDAAP VNVEMDAAPGVDLSRILNEMRDQYEKMAEK R G Q S R I 2 1 1 3 0 1 1 4 0 0 1 0 1 0 1 1 0 0 0 4 0 0 21 0 2084.9797 CON__P02533;P02533;CON__Q6IFX2 CON__P02533 262 282 KRT14 Keratin, type I cytoskeletal 14 no no 2;3 7.0695E-142 280.4 By MS/MS By MS/MS By MS/MS 4.8 3.11 4 2 2 3 2 1 2 2 2 15 1 4 141650000 121180000 2765800 17702000 + 4951 35;91 5158;5159 20774;20775;20776;20777;20778;20779;20780;20781;20782;20783;20784;20785;20786;20787;20788;20789;20790;20791;20792;20793 17428;17429;17430;17431;17432;17433;17434;17435;17436;17437;17438;17439;17440 17438 9 13 102060000 1351900 5380000 GQVGGEINVEMDAAPGVDLSR AYLKKNHEEEMNALRGQVGGEINVEMDAAP INVEMDAAPGVDLSRILNEMRDQYEKMAEK R G Q S R I 2 1 1 2 0 1 2 4 0 1 1 0 1 0 1 1 0 0 0 3 0 0 21 0 2113.011 Q04695;CON__Q04695 Q04695 231 251 KRT17 Keratin, type I cytoskeletal 17 no no 2 1.6314E-17 168.69 By MS/MS 5 0 2 2 16114000 0 0 16114000 + 4952 73 5160 20794;20795 17441;17442 17441 2 0 0 2247600 GQVGGQVSVEVDSAPGTDLAK AYLKKNHEEEISTLRGQVGGQVSVEVDSAP VSVEVDSAPGTDLAKILSDMRSQYEVMAEQ R G Q A K I 2 0 0 2 0 2 1 4 0 0 1 1 0 0 1 2 1 0 0 4 0 0 21 0 2013.0015 CON__P08727;P08727 CON__P08727 227 247 KRT19 Keratin, type I cytoskeletal 19 yes no 2 7.2293E-06 93.909 By MS/MS 5 0 1 1 17735000 0 0 17735000 + 4953 51 5161 20796 17443;17444 17444 2 0 0 2473700 GQVLNIQMR TDATLDDIKEWLEDKGQVLNIQMRRTLHKA EWLEDKGQVLNIQMRRTLHKAFKGSIFVVF K G Q M R R 0 1 1 0 0 2 0 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1057.5702 P05455 P05455 135 143 SSB Lupus La protein yes yes 2 0.00073646 132.29 By MS/MS 5 0 1 1 9557900 0 9557900 0 4954 434 5162 20797 17445 17445 1 0 2463700 0 GQVSESEDSITK PPKLRRRTFSLTEVRGQVSESEDSITKQIE EVRGQVSESEDSITKQIESLETEMEFRSAQ R G Q T K Q 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 3 1 0 0 1 0 0 12 0 1278.5939 O95239 O95239 807 818 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0011251 116.77 By MS/MS 2 0 1 1 3368900 0 3368900 0 4955 314 5163 20798 17446 17446 1 0 1517000 0 GQVTFLSIHPSGK DAKKWECLKSIKAHKGQVTFLSIHPSGKLA HKGQVTFLSIHPSGKLALSVGTDKTLRTWN K G Q G K L 0 0 0 0 0 1 0 2 1 1 1 1 0 1 1 2 1 0 0 1 0 0 13 0 1369.7354 Q9NWT1 Q9NWT1 124 136 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 3 0.013733 64.104 By MS/MS 5 0 1 1 4156000 0 4156000 0 4956 2079 5164 20799 17447 17447 1 0 1071300 0 GQVVSLIR GHAYSVTGAKQVNYRGQVVSLIRMRNPWGE AKQVNYRGQVVSLIRMRNPWGEVEWTGAWS R G Q I R M 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 1 0 0 0 2 0 0 8 0 870.5287 P07384 P07384 286 293 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.056529 71.342 By MS/MS 10 0 1 1 1203500 1203500 0 0 4957 460 5165 20800 17448 17448 1 2192600 0 0 GQWINLPVLQLTK LVTGSSYESPPPDFRGQWINLPVLQLTKDP FRGQWINLPVLQLTKDPLKTPGRLDHGTRT R G Q T K D 0 0 1 0 0 2 0 1 0 1 3 1 0 0 1 0 1 1 0 1 0 0 13 0 1508.8715 Q9NRG9 Q9NRG9 40 52 AAAS Aladin yes yes 2 0.0054537 99.174 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 10282000 0 2029100 8252600 4958 2044 5166 20801;20802;20803 17449;17450 17450 2 0 673390 1400700 GQYFGELALVTNKPR KDGGNQEVEIARCHKGQYFGELALVTNKPR GQYFGELALVTNKPRAASAYAVGDVKCLVM K G Q P R A 1 1 1 0 0 1 1 2 0 0 2 1 0 1 1 0 1 0 1 1 0 0 15 1 1691.8995 P13861;P31323 P13861 333 347 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit yes no 3 0.019504 54.537 By MS/MS 5 0 1 1 3813000 0 3813000 0 4959 553 5167 20804 17451 17451 1 0 982870 0 GRAPQVLVLAPTR PLIEKLHGELQDRKRGRAPQVLVLAPTREL KRGRAPQVLVLAPTRELANQVSKDFSDITK R G R T R E 2 2 0 0 0 1 0 1 0 0 2 0 0 0 2 0 1 0 0 2 0 0 13 1 1376.8252 Q9NR30 Q9NR30 258 270 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.0025862 128.28 By MS/MS By MS/MS 2.4 0.49 3 2 3 2 47632000 0 33540000 14092000 4960 2038 5168 20805;20806;20807;20808;20809 17452;17453;17454;17455 17455 4 0 14952000 2973400 GRDPALPTLLNPK HQSQAGPLPLSYRWRGRDPALPTLLNPKTL WRGRDPALPTLLNPKTLPSGLDDYPRASHP R G R P K T 1 1 1 1 0 0 0 1 0 0 3 1 0 0 3 0 1 0 0 0 0 0 13 1 1390.7932 Q13724 Q13724 564 576 MOGS Mannosyl-oligosaccharide glucosidase yes yes 3 0.031784 55.196 By MS/MS By matching 2.5 0.5 1 1 1 1 10571000 0 5234600 5336100 4961 1266 5169 20810;20811 17456 17456 1 0 2357200 1034900 GRDVIAQSQSGTGK KPSAIQQRAIKQIIKGRDVIAQSQSGTGKT KGRDVIAQSQSGTGKTATFSISVLQCLDIQ K G R G K T 1 1 0 1 0 2 0 3 0 1 0 1 0 0 0 2 1 0 0 1 0 0 14 1 1402.7165 P38919 P38919 75 88 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 3 0.042881 47.844 By MS/MS 5 0 1 1 2426900 0 2426900 0 4962 775 5170 20812 17457 17457 1 0 625590 0 GREEYEGPNK GPRGMGPGTPAGYGRGREEYEGPNKKPRF_ AGYGRGREEYEGPNKKPRF___________ R G R N K K 0 1 1 0 0 0 3 2 0 0 0 1 0 0 1 0 0 0 1 0 0 0 10 1 1177.5364 P23246 P23246 694 703 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 2.8722E-06 159.58 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 6677100 0 3862300 2814800 4963 638 5171 20813;20814 17458;17459;17460 17460 3 0 1739200 545940 GRFPESSAVQSSSFER SRQQNRFNDFDHRERGRFPESSAVQSSSFE RFPESSAVQSSSFERRDRFVGQSEGKKARP R G R E R R 1 2 0 0 0 1 2 1 0 0 0 0 0 2 1 5 0 0 0 1 0 0 16 1 1769.8333 Q9NWH9 Q9NWH9 777 792 SLTM SAFB-like transcription modulator yes yes 2;3 2.1069E-07 166.38 By MS/MS 1.5 0.5 2 2 4 20010000 0 0 20010000 4964 2078 5172 20815;20816;20817;20818 17461;17462 17462 2 0 0 4437000 GRGGGGGGFRGFSSGSAVVSGGSR ______________________________ RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG R G R S R R 1 3 0 0 0 0 0 11 0 0 0 0 0 2 0 5 0 0 0 2 0 0 24 2 2112.0209 CON__P35908;CON__P35908v2;P35908 CON__P35908 11 34 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 3.8804E-25 167.88 By MS/MS 6.31 2.89 1 1 1 1 2 2 1 2 2 13 156410000 156410000 0 0 + 4965 65;66 5173 20819;20820;20821;20822;20823;20824;20825;20826;20827;20828;20829;20830;20831 17463;17464;17465;17466;17467;17468;17469;17470;17471 17469 9 176950000 0 0 GRLDSELR INNLRRQLDSIVGERGRLDSELRNMQDLVE DSIVGERGRLDSELRNMQDLVEDLKNKYED R G R L R N 0 2 0 1 0 0 1 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 1 944.50394 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668;CON__P50446 CON__P48668 233 240 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 1.47E-12 175.44 By MS/MS By MS/MS By MS/MS 5.33 2.96 2 2 2 2 2 1 2 1 2 2 9 2 7 332890000 254490000 4255400 74146000 + 4966 68;37;47;58;69 5174 20832;20833;20834;20835;20836;20837;20838;20839;20840;20841;20842;20843;20844;20845;20846;20847;20848;20849 17472;17473;17474;17475;17476;17477;17478;17479;17480;17481;17482;17483;17484;17485;17486;17487;17488;17489;17490;17491 17491 20 237140000 1290300 31841000 GRPAPGFHHGDGPGNAVQEIMIPASK SVQSAKRLLDQIVEKGRPAPGFHHGDGPGN GPGNAVQEIMIPASKAGLVIGKGGETIKQL K G R S K A 3 1 1 1 0 1 1 5 2 2 0 1 1 1 4 1 0 0 0 1 0 0 26 1 2639.3027 Q96AE4 Q96AE4 171 196 FUBP1 Far upstream element-binding protein 1 yes yes 4 1.9575E-08 82.342 By MS/MS By matching 3.67 0.471 1 2 2 1 17148000 0 13132000 4016000 4967 1750 5175 20850;20851;20852 17492;17493 17493 2 0 5206200 655950 GRPYTLSVALPGSILDNAQSPELR KRLEEEEAAAEKEDRGRPYTLSVALPGSIL LPGSILDNAQSPELRTYLAGQIARACAIFC R G R L R T 2 2 1 1 0 1 1 2 0 1 4 0 0 0 3 3 1 0 1 1 0 0 24 1 2553.3551 Q5T280 Q5T280 70 93 C9orf114 Putative methyltransferase C9orf114 yes yes 3 2.5464E-15 113.89 By MS/MS 5 0 1 1 8608200 0 8608200 0 4968 1449 5176 20853 17494 17494 1 0 2218900 0 GRSEADSDKNATILELR EELRNLRLEYDDLRRGRSEADSDKNATILE SEADSDKNATILELRSQLQISNNRTLELQG R G R L R S 2 2 1 2 0 0 2 1 0 1 2 1 0 0 0 2 1 0 0 0 0 0 17 2 1873.9494 P15924 P15924 1737 1753 DSP Desmoplakin yes yes 3 0.001631 75.548 By MS/MS 1 0 1 1 6844500 0 0 6844500 4969 572 5177 20854 17495 17495 1 0 0 1474700 GSAPPGPVPEGSIR ______________________________ KGSAPPGPVPEGSIRIYSMRFCPFAERTRL K G S I R I 1 1 0 0 0 0 1 3 0 1 0 0 0 0 4 2 0 0 0 1 0 0 14 0 1319.6834 P78417 P78417 12 25 GSTO1 Glutathione S-transferase omega-1 yes yes 2 0.060123 62.408 By MS/MS 7 0 1 1 3050000 0 3050000 0 4970 1088 5178 20855 17496 17496 1 0 1751300 0 GSAVHQLSEELR PDPDTGLYMLQLAGRGSAVHQLSEELRCAL AGRGSAVHQLSEELRCALRDARVTPGSGAL R G S L R C 1 1 0 0 0 1 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1324.6735 P58107 P58107 2421 2432 EPPK1 Epiplakin yes no 2;3 1.6498E-05 145.41 By matching By MS/MS By MS/MS 1.82 0.936 5 4 1 1 1 4 6 589260000 1741300 285620000 301890000 4971 958 5179 20856;20857;20858;20859;20860;20861;20862;20863;20864;20865;20866 17497;17498;17499;17500;17501;17502;17503;17504 17498 6 1741300 138670000 64966000 GSDFDCELR LESDAVECLNYQHYKGSDFDCELRLLIHQS NYQHYKGSDFDCELRLLIHQSLAGGIIGVK K G S L R L 0 1 0 2 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1097.4448 P61978 P61978 140 148 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 7.4866E-05 110.03 By matching By MS/MS 4 0 2 1 1 16648000 6901700 0 9746100 4972 1002 5180 20867;20868 17505 17505 0 5384500 0 1591900 GSDVASAQLPNFR PFQDGYDLTIGTSERGSDVASAQLPNFRHA ERGSDVASAQLPNFRHALVVFGGLQGLEAG R G S F R H 2 1 1 1 0 1 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1360.6735 Q5T280 Q5T280 293 305 C9orf114 Putative methyltransferase C9orf114 yes yes 2 1.0457E-18 195.79 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 35226000 0 13048000 22177000 4973 1449 5181 20869;20870;20871 17506;17507 17507 2 0 3363400 3344800 GSEHQAIVQHLEK LHQDLVNRKARKLRKGSEHQAIVQHLEKSF RKGSEHQAIVQHLEKSFAIASLVETGHLAA K G S E K S 1 0 0 0 0 2 2 1 2 1 1 1 0 0 0 1 0 0 0 1 0 0 13 0 1474.7528 Q14690 Q14690 925 937 PDCD11 Protein RRP5 homolog yes yes 2;3 5.125E-05 158.06 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 40176000 0 5936400 34239000 4974 1314 5182 20872;20873;20874;20875 17508;17509;17510;17511;17512 17510 5 0 2901600 7405100 GSETDSAQDQPVK GAKKKKKKQKKKKEKGSETDSAQDQPVKMN EKGSETDSAQDQPVKMNSLPAERIQEIQKA K G S V K M 1 0 0 2 0 2 1 1 0 0 0 1 0 0 1 2 1 0 0 1 0 0 13 0 1360.6107 P30419 P30419 68 80 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 0.016563 81.335 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 4228500 0 1139400 3089100 4975 714 5183 20876;20877;20878 17513;17514 17513 2 0 293700 587830 GSFGELALMYNTPR TKDNQTRSVGQYDNRGSFGELALMYNTPRA RGSFGELALMYNTPRAATIVATSEGSLWGL R G S P R A 1 1 1 0 0 0 1 2 0 0 2 0 1 1 1 1 1 0 1 0 0 0 14 0 1554.7501 P13861;P31323 P13861 204 217 PRKAR2A;PRKAR2B cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit yes no 2 0.0004859 136.67 By MS/MS 4.5 0.5 1 1 2 5420700 0 5420700 0 4976 553 5184 20879;20880 17515 17515 1 0 1472900 0 GSFSDTGLGDGK EQKQTNTDKEKIKEKGSFSDTGLGDGKMKS KEKGSFSDTGLGDGKMKSDSFAPKTDSEKP K G S G K M 0 0 0 2 0 0 0 4 0 0 1 1 0 1 0 2 1 0 0 0 0 0 12 0 1139.5095 Q9Y2W1 Q9Y2W1 376 387 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.0029147 107.83 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 20165000 0 11458000 8707000 4977 2252 5185 20881;20882 17516;17517 17516 2 0 5159700 1876100 GSFSEQGINEFLR MAAINARKMKFALLKGSFSEQGINEFLREL LKGSFSEQGINEFLRELSFGRGSTAPVGGG K G S L R E 0 1 1 0 0 1 2 2 0 1 1 0 0 2 0 2 0 0 0 0 0 0 13 0 1482.7103 Q15084 Q15084 374 386 PDIA6 Protein disulfide-isomerase A6 yes yes 2 0.017167 80.706 By MS/MS 5 0 1 1 6428200 0 0 6428200 4978 1344 5186 20883 17518 17518 1 0 0 896610 GSGDPSSSSSSGNPLVYLDVDANGKPLGR RSVPLRLPAARACSKGSGDPSSSSSSGNPL LVYLDVDANGKPLGRVVLELKADVVPKTAE K G S G R V 1 1 2 3 0 0 0 5 0 0 3 1 0 0 3 7 0 0 1 2 0 0 29 1 2832.3526 P30405 P30405 33 61 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 3 3.698E-11 84.576 By matching By MS/MS 7 0 2 1 1 26156000 0 1407500 24748000 4979 713 5187 20884;20885 17519 17519 1 0 808190 4391400 GSGGGGPASASGPAASESRPLPR TASAIVSPHGDESPRGSGGGGPASASGPAA SASGPAASESRPLPRVHRARGAPRQQGPGT R G S P R V 4 2 0 0 0 0 1 6 0 0 1 0 0 0 4 5 0 0 0 0 0 0 23 1 2021.9879 Q9Y6J9 Q9Y6J9 504 526 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 3 0.00087575 59.356 By MS/MS By MS/MS 3 0 2 1 1 10091000 0 2346100 7745000 4980 2312 5188 20886;20887 17520;17521 17520 2 0 1000100 1502200 GSGGGSSGGSIGGRGSSSGGVK RGGSGGGGGGSSGGRGSGGGSSGGSIGGRG GGSIGGRGSSSGGVKSSGGSSSVKFVSTTY R G S V K S 0 1 0 0 0 0 0 11 0 1 0 1 0 0 0 7 0 0 0 1 0 0 22 1 1750.8194 P04264;CON__P04264 P04264 603 624 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.061912 27.739 By MS/MS 3.25 1.48 1 1 1 1 4 2394700 0 2394700 0 + 4981 413 5189 20888;20889;20890;20891 17522 17522 1 0 936910 0 GSGGLGGACGGAGFGSR VSRSGFSSISVSRSRGSGGLGGACGGAGFG GGLGGACGGAGFGSRSLYGLGGSKRISIGG R G S S R S 2 1 0 0 1 0 0 9 0 0 1 0 0 1 0 2 0 0 0 0 0 0 17 0 1423.6263 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 43 59 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 4.7905E-09 166.48 By MS/MS By matching 6.5 3.43 2 1 1 1 1 2 6 2 81805000 71924000 0 9880700 + 4982 68;47;37 5190 20892;20893;20894;20895;20896;20897;20898;20899 17523;17524;17525;17526 17523 3 77201000 0 9360800 GSGGTAEHPFTVEEFVLPK SSEPFQGSYKVVVQKGSGGTAEHPFTVEEF TAEHPFTVEEFVLPKFEVQVRMPKIITILE K G S P K F 1 0 0 0 0 0 3 3 1 0 1 1 0 2 2 1 2 0 0 2 0 0 19 0 2000.9844 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 210 228 yes yes 2;3 8.0128E-09 146.07 By MS/MS By MS/MS 8.25 0.433 3 1 2 2 35150000 20315000 0 14835000 + 4983 28 5191 20900;20901;20902;20903 17527;17528 17528 2 17441000 0 2493800 GSGSGQSPSSGQHGTGFGR QHSSGSGQSPGHGQRGSGSGQSPSSGQHGT GQSPSSGQHGTGFGRSSSSGPYVSGSGYSS R G S G R S 0 1 0 0 0 2 0 7 1 0 0 0 0 1 1 5 1 0 0 0 0 0 19 0 1746.767 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 430 448 HRNR Hornerin yes no 3 1.1299E-09 129.05 By MS/MS By MS/MS By MS/MS 4.33 2.58 2 1 1 1 1 2 1 2 2 5 14237000 8125700 1444300 4666900 + 4984 96 5192 20904;20905;20906;20907;20908;20909;20910;20911;20912 17529;17530;17531;17532;17533;17534;17535;17536 17530 8 10819000 750100 893850 GSGSQSSVPSVDQFTGVGIR SQSQDEGEGSGESERGSGSQSSVPSVDQFT SSVPSVDQFTGVGIRVSFTGKQGEMREMQQ R G S I R V 0 1 0 1 0 2 0 4 0 1 0 0 0 1 1 5 1 0 0 3 0 0 20 0 1963.9599 Q9UQE7 Q9UQE7 1080 1099 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 6.3489E-36 200.16 By MS/MS By MS/MS 2 0.816 3 3 3 3 6 146550000 0 32957000 113590000 4985 2222 5193 20913;20914;20915;20916;20917;20918;20919;20920;20921 17537;17538;17539;17540;17541;17542;17543 17538 7 0 14974000 25056000 GSGTAEVELKK ALDTKGPEIRTGLIKGSGTAEVELKKGATL GLIKGSGTAEVELKKGATLKITLDNAYMEK K G S K K G 1 0 0 0 0 0 2 2 0 0 1 2 0 0 0 1 1 0 0 1 0 0 11 1 1117.5979 P14618 P14618 126 136 PKM Pyruvate kinase PKM yes yes 2 0.044205 81.263 By MS/MS 3.5 0.5 1 1 2 6931700 0 0 6931700 4986 559 5194 20922;20923 17544 17544 1 0 0 1299700 GSIAQSETHVLSIK TDERELTFYYLIKARGSIAQSETHVLSIKQ RGSIAQSETHVLSIKQGELKGVFSFSFRVE R G S I K Q 1 0 0 0 0 1 1 1 1 2 1 1 0 0 0 3 1 0 0 1 0 0 14 0 1468.7886 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 506 519 yes yes 2;3 0.00040473 126.12 By matching By MS/MS By MS/MS 9 1.22 2 2 4 1 4 3 37625000 1687000 5619100 30319000 + 4987 30 5195 20924;20925;20926;20927;20928;20929;20930;20931 17545;17546;17547;17548 17547 4 3635800 21429000 47526000 GSIFVVFDSIESAK VLNIQMRRTLHKAFKGSIFVVFDSIESAKK KGSIFVVFDSIESAKKFVETPGQKYKETDL K G S A K K 1 0 0 1 0 0 1 1 0 2 0 1 0 2 0 3 0 0 0 2 0 0 14 0 1497.7715 P05455 P05455 152 165 SSB Lupus La protein yes yes 2 2.5412E-08 110.74 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 5037800 0 0 5037800 4988 434 5196 20932;20933 17549;17550 17549 2 0 0 822840 GSISSTSEVHSPPNVGLR RSGEAVISNTSRLSRGSISSTSEVHSPPNV SSTSEVHSPPNVGLRRSGQIEGVRQMHSNA R G S L R R 0 1 1 0 0 0 1 2 1 1 1 0 0 0 2 5 1 0 0 2 0 0 18 0 1822.9173 Q8WWQ0 Q8WWQ0 673 690 PHIP PH-interacting protein yes yes 2;3 1.3944E-51 222.25 By MS/MS By MS/MS 1 0 2 1 1 21253000 0 11737000 9515300 4989 1690 5197 20934;20935 17551;17552 17552 2 0 5737100 2050200 GSLDPESIFEMMETGKR VTSKGVVTCMRKVGKGSLDPESIFEMMETG LDPESIFEMMETGKRVGKVLHASLQSVVHK K G S K R V 0 1 0 1 0 0 3 2 0 1 1 1 2 1 1 2 1 0 0 0 0 0 17 1 1925.8863 Q15024 Q15024 245 261 EXOSC7 Exosome complex component RRP42 yes yes 3 0.027657 41.348 By MS/MS By matching 6 0 2 1 1 3765700 0 432310 3333400 4990 1334 5198 20936;20937 17553 17553 1 0 149650 498710 GSLDYRPLTTADPIDEHR TNPNYEIMCMIRDFRGSLDYRPLTTADPID DYRPLTTADPIDEHRICVCVRKRPLNKKET R G S H R I 1 2 0 3 0 0 1 1 1 1 2 0 0 0 2 1 2 0 1 0 0 0 18 1 2055.0021 O00139 O00139 206 223 KIF2A Kinesin-like protein KIF2A yes yes 3;4 0.0016423 67.227 By matching By MS/MS 2.67 0.471 1 2 1 2 30461000 0 3042800 27418000 4991 104 5199 20938;20939;20940 17554;17555 17554 2 0 1370200 5317700 GSLGGGFSSGGFSGGSFSR GGGGGVSSLRISSSKGSLGGGFSSGGFSGG GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY K G S S R G 0 1 0 0 0 0 0 8 0 0 1 0 0 3 0 6 0 0 0 0 0 0 19 0 1706.7649 P13645;CON__P13645 P13645 41 59 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.3223E-156 283.21 By MS/MS By MS/MS By MS/MS 5.34 2.87 7 3 4 4 6 6 5 3 5 4 17 11 19 18143000000 14651000000 912120000 2580000000 + 4992 56 5200 20941;20942;20943;20944;20945;20946;20947;20948;20949;20950;20951;20952;20953;20954;20955;20956;20957;20958;20959;20960;20961;20962;20963;20964;20965;20966;20967;20968;20969;20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980;20981;20982;20983;20984;20985;20986;20987 17556;17557;17558;17559;17560;17561;17562;17563;17564;17565;17566;17567;17568;17569;17570;17571;17572;17573;17574;17575;17576;17577;17578;17579;17580;17581;17582;17583;17584;17585;17586;17587;17588;17589;17590;17591;17592;17593;17594;17595;17596;17597;17598;17599;17600;17601;17602;17603;17604;17605;17606;17607;17608;17609;17610;17611;17612;17613;17614;17615;17616;17617;17618;17619;17620;17621;17622;17623;17624;17625;17626;17627;17628;17629;17630;17631;17632;17633;17634;17635;17636;17637;17638;17639;17640;17641;17642;17643;17644;17645;17646;17647 17560 92 15367000000 703500000 485600000 GSLGGGYSSGGFSGGSFSR GGGGGGGSVRVSSTRGSLGGGYSSGGFSGG GGYSSGGFSGGSFSRGSSGGGCFGGSSGGY R G S S R G 0 1 0 0 0 0 0 8 0 0 1 0 0 2 0 6 0 0 1 0 0 0 19 0 1722.7598 CON__P02535-1 CON__P02535-1 33 51 yes yes 2 0.00063024 82.908 By MS/MS 4.4 4.18 3 1 1 5 12187000 12187000 0 0 + 4993 36 5201 20988;20989;20990;20991;20992 17648;17649;17650;17651;17652 17648 5 12779000 0 0 GSLGQGTAPVLPGK VGKGLQVKAASVPVKGSLGQGTAPVLPGKT KGSLGQGTAPVLPGKTGPTVTQVKAEKQED K G S G K T 1 0 0 0 0 1 0 4 0 0 2 1 0 0 2 1 1 0 0 1 0 0 14 0 1280.7089 Q13428 Q13428 733 746 TCOF1 Treacle protein yes yes 2 0.0021066 101.93 By matching By MS/MS 2.17 1.07 2 2 1 1 2 4 97622000 4060800 0 93561000 4994 1247 5202 20993;20994;20995;20996;20997;20998 17653;17654 17654 2 4255900 0 20251000 GSLGSQGAKDEPEEELQK KRDKASGDVKEKKGKGSLGSQGAKDEPEEE GSQGAKDEPEEELQKGMGTVEGGDQSNPKS K G S Q K G 1 0 0 1 0 2 4 3 0 0 2 2 0 0 1 2 0 0 0 0 0 0 18 1 1900.9014 Q13428 Q13428 1406 1423 TCOF1 Treacle protein yes yes 3 9.3653E-07 109.38 By MS/MS 4 2.16 1 1 1 1 1 1 6 32701000 0 0 32701000 4995 1247 5203 20999;21000;21001;21002;21003;21004 17655;17656;17657 17656 3 0 0 6283800 GSLLWVLDHTK RNLEILQNQTDMKTKGSLLWVLDHTKTSFG MKTKGSLLWVLDHTKTSFGRRKLKKWVTQP K G S T K T 0 0 0 1 0 0 0 1 1 0 3 1 0 0 0 1 1 1 0 1 0 0 11 0 1267.6925 P20585 P20585 558 568 MSH3 DNA mismatch repair protein Msh3 yes yes 2 0.010563 90.108 By matching By MS/MS 1.67 0.471 1 2 2 1 18401000 11481000 0 6919900 4996 616 5204 21005;21006;21007 17658 17658 1 11774000 0 1563800 GSLPLSAHGIVVAWLSR DLVWSAWYGKCVKGKGSLPLSAHGIVVAWL LPLSAHGIVVAWLSRAEWDQVTVYLFCDDH K G S S R A 2 1 0 0 0 0 0 2 1 1 3 0 0 0 1 3 0 1 0 2 0 0 17 0 1761.989 Q9Y4W2 Q9Y4W2 32 48 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.00055135 96.591 By MS/MS 3 0 1 1 5061700 0 0 5061700 4997 2289 5205 21008 17659 17659 1 0 0 981730 GSMVGPFQEAAFALPVSGMDKPVFTDPPVK EDKARQGGDLGWMTRGSMVGPFQEAAFALP VSGMDKPVFTDPPVKTKFGYHIIMVEGRK_ R G S V K T 3 0 0 2 0 1 1 3 0 0 1 2 2 3 5 2 1 0 0 4 0 0 30 1 3118.5508 Q9Y237 Q9Y237 88 117 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 3 0.020799 24.835 By matching By MS/MS 8 0 2 1 1 22185000 0 2387700 19798000 4998 2230 5206 21009;21010 17660 17660 1 0 1086300 3035200 GSNEEDTDTPLFIGK HTGIDLVGTIIATIKGSNEEDTDTPLFIGK GSNEEDTDTPLFIGKVRTLEFPFVNGSAEI K G S G K V 0 0 1 2 0 0 2 2 0 1 1 1 0 1 1 1 2 0 0 0 0 0 15 0 1621.7471 A6NHR9 A6NHR9 1543 1557 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00038036 116.54 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 26762000 0 5911100 20851000 4999 15 5207 21011;21012;21013 17661;17662 17661 2 0 2889200 4514400 GSNMDFREPTEEER GPPMGSRFRDGPPLRGSNMDFREPTEEERA RGSNMDFREPTEEERAQRPRLQLKPRTVAT R G S E R A 0 2 1 1 0 0 4 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 14 1 1695.7159 Q15056 Q15056 192 205 EIF4H Eukaryotic translation initiation factor 4H yes yes 3 0.012422 63.631 By MS/MS 6.5 0.5 1 1 2 14633000 0 0 14633000 5000 1340 5208 21014;21015 17663 17663 1 0 0 2523700 GSNNVALGYDEGSIIVK LNYGMERVWCVASLRGSNNVALGYDEGSII NNVALGYDEGSIIVKLGREEPAMSMDANGK R G S V K L 1 0 2 1 0 0 1 3 0 2 1 1 0 0 0 2 0 0 1 2 0 0 17 0 1734.8788 P35606 P35606 282 298 COPB2 Coatomer subunit beta yes yes 2 4.0498E-05 104.7 By MS/MS 2 0 1 1 5238500 0 5238500 0 5001 754 5209 21016 17664 17664 1 0 2359000 0 GSNSLPLLR LLHAATYTKKVLDARGSNSLPLLRSVLDKL KVLDARGSNSLPLLRSVLDKLSANQQNILK R G S L R S 0 1 1 0 0 0 0 1 0 0 3 0 0 0 1 2 0 0 0 0 0 0 9 0 955.54508 P57088 P57088 135 143 TMEM33 Transmembrane protein 33 yes yes 2 0.060825 68.383 By MS/MS 6.5 0.5 1 1 2 3815400 0 3815400 0 5002 954 5210 21017;21018 17665 17665 1 0 1928900 0 GSNTIASAAADKIPGLLGVFQK NIPALVRLLQAFLERGSNTIASAAADKIPG AAADKIPGLLGVFQKLIASKANDHQGFYLL R G S Q K L 4 0 1 1 0 1 0 3 0 2 2 2 0 1 1 2 1 0 0 1 0 0 22 1 2157.1794 P55060 P55060 715 736 CSE1L Exportin-2 yes yes 3 0.019133 36.923 By MS/MS 1.5 0.5 1 1 2 5311500 0 5311500 0 5003 935 5211 21019;21020 17666 17666 1 0 2481900 0 GSPAINVAVHVFR ESKCPLMVKVLDAVRGSPAINVAVHVFRKA VRGSPAINVAVHVFRKAADDTWEPFASGKT R G S F R K 2 1 1 0 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 3 0 0 13 0 1365.7517 P02766 P02766 42 54 TTR Transthyretin yes yes 2;3 0.00034587 142.43 By MS/MS 9.5 0.5 2 2 4 27349000 27349000 0 0 5004 396 5212 21021;21022;21023;21024 17667;17668;17669;17670 17669 4 18523000 0 0 GSPDGSLQTGKPSAPK DISPPADALKLRSPRGSPDGSLQTGKPSAP SPDGSLQTGKPSAPKKLKLDVGEAMAPPSH R G S P K K 1 0 0 1 0 1 0 3 0 0 1 2 0 0 3 3 1 0 0 0 0 0 16 1 1525.7736 Q8IZL8 Q8IZL8 480 495 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 0.00053205 108.56 By MS/MS 2 0.816 1 1 1 3 3665300 0 0 3665300 5005 1596 5213 21025;21026;21027 17671 17671 1 0 0 783930 GSPGVPSFAAGPPISEGK KIYPVGYFTKENPVKGSPGVPSFAAGPPIS GVPSFAAGPPISEGKYFSSNPIIPSQSAAS K G S G K Y 2 0 0 0 0 0 1 4 0 1 0 1 0 1 4 3 0 0 0 1 0 0 18 0 1653.8362 Q15517 Q15517 332 349 CDSN Corneodesmosin yes yes 2 1.3484E-08 134.68 By MS/MS By MS/MS 7.5 1.8 1 2 2 1 2 6 2 81811000 73425000 0 8386400 5006 1372 5214 21028;21029;21030;21031;21032;21033;21034;21035 17672;17673;17674;17675;17676;17677;17678;17679;17680;17681;17682 17679 11 83576000 0 9227500 GSPGVVHLVAFHPDPTR RVWDIVRHYGTHHFRGSPGVVHLVAFHPDP PGVVHLVAFHPDPTRLLLFSSATDAAIRVW R G S T R L 1 1 0 1 0 0 0 2 2 0 1 0 0 1 3 1 1 0 0 3 0 0 17 0 1784.9322 Q12788 Q12788 149 165 TBL3 Transducin beta-like protein 3 yes yes 3 0.036105 38.453 By MS/MS By matching 2.67 0.471 1 2 2 1 16504000 0 8600400 7904000 5007 1197 5215 21036;21037;21038 17683;17684 17683 2 0 3763400 1533000 GSPWVSVVDR HAGEWARKPLRFYVRGSPWVSVVDRVAEQD RFYVRGSPWVSVVDRVAEQDTQA_______ R G S D R V 0 1 0 1 0 0 0 1 0 0 0 0 0 0 1 2 0 1 0 3 0 0 10 0 1100.5615 P29372 P29372 281 290 MPG DNA-3-methyladenine glycosylase yes yes 2 0.0077155 92.051 By matching By MS/MS 5 0.816 1 1 1 2 1 48408000 0 17186000 31222000 5008 698 5216 21039;21040;21041 17685 17685 1 0 5405500 4671100 GSRPLLSFDPAFDELPHYALLK IHTLAELKMTGNCLKGSRPLLSFDPAFDEL FDPAFDELPHYALLKELLIQIFSTPRYHPK K G S L K E 2 1 0 2 0 0 1 1 1 0 5 1 0 2 3 2 0 0 1 0 0 0 22 1 2485.3005 Q8TDN6 Q8TDN6 161 182 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3;4 6.6451E-11 100.85 By MS/MS 5 0.707 1 2 1 4 53005000 0 0 53005000 5009 1663 5217 21042;21043;21044;21045 17686;17687 17687 2 0 0 7495800 GSSAAGLTASVMR FVEKCSPIGVYTSGKGSSAAGLTASVMRDP GKGSSAAGLTASVMRDPSSRNFIMEGGAMV K G S M R D 3 1 0 0 0 0 0 2 0 0 1 0 1 0 0 3 1 0 0 1 0 0 13 0 1206.6027 P33992 P33992 408 420 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.00029885 136.49 By MS/MS 3 0 1 1 14367000 0 14367000 0 5010 732 5218 21046 17688 17688 1 0 6124800 0 GSSEEDEDARTPDR YPARPAQLRRRASVRGSSEEDEDARTPDRA RGSSEEDEDARTPDRATQGPGLAARRWWAA R G S D R A 1 2 0 3 0 0 3 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 14 1 1562.6445 Q8NC56 Q8NC56 137 150 LEMD2 LEM domain-containing protein 2 yes yes 3 0.061704 42.209 By MS/MS 4 0 1 1 1434900 0 0 1434900 5011 1631 5219 21047 17689 17689 1 0 0 234360 GSSFEMTDDDSAIR SMTQQDSHAPLRDSRGSSFEMTDDDSAIRA RGSSFEMTDDDSAIRALTQFPLPKNLLAKV R G S I R A 1 1 0 3 0 0 1 1 0 1 0 0 1 1 0 3 1 0 0 0 0 0 14 0 1529.6304 Q7L2E3 Q7L2E3 224 237 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.00091566 110.66 By MS/MS 2 0 1 1 13470000 0 0 13470000 5012 1522 5220 21048 17690 17690 1 0 0 3044000 GSSGASVAAAAAAAVAVVESMVTATEVAPPPPPVEVPIR LGAKWREFSTNNPFKGSSGASVAAAAAAAV TEVAPPPPPVEVPIRKAKTKEGKGPNARRK K G S I R K 11 1 0 0 0 0 3 2 0 1 0 0 1 0 6 4 2 0 0 8 0 0 39 0 3625.9025 Q14839 Q14839 220 258 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3;4;5 0.00026378 34.749 By MS/MS 1.4 0.49 3 2 5 14453000 0 0 14453000 5013 1321 5221 21049;21050;21051;21052;21053 17691;17692;17693;17694;17695 17694 5 0 0 3179600 GSSGASVAAAAAAAVAVVESMVTATEVAPPPPPVEVPIRK LGAKWREFSTNNPFKGSSGASVAAAAAAAV EVAPPPPPVEVPIRKAKTKEGKGPNARRKP K G S R K A 11 1 0 0 0 0 3 2 0 1 0 1 1 0 6 4 2 0 0 8 0 0 40 1 3753.9975 Q14839 Q14839 220 259 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3;4;5 3.0326E-09 50.513 By MS/MS 2.2 0.98 3 3 3 1 10 16552000 0 0 16552000 5014 1321 5222 21054;21055;21056;21057;21058;21059;21060;21061;21062;21063 17696;17697;17698;17699;17700;17701 17698 6 0 0 3546600 GSSGGGCFGGSSGGYGGLGGFGGGSFR GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY GGYGGLGGFGGGSFRGSYGSSSFGGSYGGI R G S F R G 0 1 0 0 1 0 0 15 0 0 1 0 0 3 0 5 0 0 1 0 0 0 27 0 2341.9771 P13645;CON__P13645 P13645 60 86 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 2.7279E-191 283.83 By MS/MS By MS/MS By MS/MS 5.16 2.86 6 3 4 2 3 6 4 3 4 2 16 7 14 548660000 289730000 15273000 243660000 + 5015 56 5223 21064;21065;21066;21067;21068;21069;21070;21071;21072;21073;21074;21075;21076;21077;21078;21079;21080;21081;21082;21083;21084;21085;21086;21087;21088;21089;21090;21091;21092;21093;21094;21095;21096;21097;21098;21099;21100 17702;17703;17704;17705;17706;17707;17708;17709;17710;17711;17712;17713;17714;17715;17716;17717;17718;17719;17720;17721;17722;17723;17724;17725;17726;17727;17728;17729;17730;17731;17732;17733;17734;17735 17730 33 252810000 7360100 46633000 GSSGVGLTAAVLR YIDRLAPRSQYTTGRGSSGVGLTAAVLRDS GRGSSGVGLTAAVLRDSVSGELTLEGGALV R G S L R D 2 1 0 0 0 0 0 3 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1186.667 P33993 P33993 408 420 MCM7 DNA replication licensing factor MCM7 yes yes 2 2.5953E-07 167.93 By MS/MS 5.33 2.62 1 1 1 3 30047000 0 30047000 0 5016 733 5224 21101;21102;21103 17736;17737 17736 2 0 14695000 0 GSSNSYAIK TIAECLADELINAAKGSSNSYAIKKKDELE LINAAKGSSNSYAIKKKDELERVAKSNR__ K G S I K K 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 3 0 0 1 0 0 0 9 0 925.45051 P46782 P46782 183 191 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 0.019256 82.716 By MS/MS By matching 7 0 2 1 1 12987000 0 5842300 7144600 5017 832 5225 21104;21105 17738 17738 1 0 3354700 1267800 GSSSGGGYSSGSSSYGSGGR SNVASKAAFGGSGGRGSSSGGGYSSGSSSY GGYSSGSSSYGSGGRQSGSRGGSGGGGSIS R G S G R Q 0 1 0 0 0 0 0 8 0 0 0 0 0 0 0 9 0 0 2 0 0 0 20 0 1739.6983 CON__P35908;CON__P35908v2;P35908 CON__P35908 531 550 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 2.9606E-102 255.85 By MS/MS By MS/MS By MS/MS 5.52 3.01 3 3 3 2 2 3 3 1 4 3 11 7 9 382820000 335750000 14755000 32321000 + 5018 65;66 5226 21106;21107;21108;21109;21110;21111;21112;21113;21114;21115;21116;21117;21118;21119;21120;21121;21122;21123;21124;21125;21126;21127;21128;21129;21130;21131;21132 17739;17740;17741;17742;17743;17744;17745;17746;17747;17748;17749;17750;17751;17752;17753;17754;17755;17756;17757;17758;17759;17760;17761;17762;17763;17764;17765;17766;17767;17768;17769;17770;17771;17772;17773;17774;17775;17776;17777;17778;17779;17780;17781;17782;17783 17763 45 398580000 9921800 15415000 GSSVDGSPLLLFLR CAHLCNAVIGYLSTRGSSVDGSPLLLFLRD RGSSVDGSPLLLFLRDQTSSRLLEQVLLVL R G S L R D 0 1 0 1 0 0 0 2 0 0 4 0 0 1 1 3 0 0 0 1 0 0 14 0 1459.8035 Q86U38 Q86U38 311 324 NOP9 Nucleolar protein 9 yes yes 2 0.00049103 120.09 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 12478000 0 3843100 8635000 5019 1543 5227 21133;21134;21135 17784;17785 17785 2 0 1410700 1674800 GSSYGVTSTESYKETLHK IEAQTRVRGSGLGARGSSYGVTSTESYKET YGVTSTESYKETLHKTMVTRFNEAQ_____ R G S H K T 0 0 0 0 0 0 2 2 1 0 1 2 0 0 0 4 3 0 2 1 0 0 18 1 1972.9378 P98175 P98175 903 920 RBM10 RNA-binding protein 10 yes yes 3 0.00031656 83.253 By MS/MS 2 0 1 1 7785900 0 7785900 0 5020 1117 5228 21136 17786 17786 1 0 3506100 0 GSTAPVGGGAFPTIVER EQGINEFLRELSFGRGSTAPVGGGAFPTIV TAPVGGGAFPTIVEREPWDGRDGELPVEDD R G S E R E 2 1 0 0 0 0 1 4 0 1 0 0 0 1 2 1 2 0 0 2 0 0 17 0 1614.8366 Q15084 Q15084 393 409 PDIA6 Protein disulfide-isomerase A6 yes yes 2 9.8693E-06 115.8 By MS/MS By MS/MS By MS/MS 5 0 3 1 1 1 15190000 2134100 4764300 8291600 5021 1344 5229 21137;21138;21139 17787;17788;17789 17788 2 1709700 1228100 1156500 GSTDNLMDDIER KHEKEDGAISTIVLRGSTDNLMDDIERAVD VLRGSTDNLMDDIERAVDDGVNTFKVLTRD R G S E R A 0 1 1 3 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 0 0 0 12 0 1364.5878 P50990 P50990 379 390 CCT8 T-complex protein 1 subunit theta yes yes 2 0.0010576 117.52 By matching By MS/MS 4 0 2 1 1 9566200 1811700 0 7754500 5022 885 5230 21140;21141 17790 17790 1 1413400 0 1266600 GSTLPDVTEVSTFFPFHEYFANAPQPIFK VMSRWEEYISKVKNKGSTLPDVTEVSTFFP PFHEYFANAPQPIFKGRSYEEDMEIAEGCF K G S F K G 2 0 1 1 0 1 2 1 1 1 1 1 0 5 4 2 3 0 1 2 0 0 29 0 3285.6023 O60306 O60306 955 983 AQR Intron-binding protein aquarius yes yes 3 1.0128E-07 66.886 By MS/MS 2 0 1 1 5712400 0 0 5712400 5023 225 5231 21142 17791 17791 1 0 0 1290900 GSTLTEILEGLK LSVSIALAFLSLGARGSTLTEILEGLKFNL GARGSTLTEILEGLKFNLTEIQEKEIHHSF R G S L K F 0 0 0 0 0 0 2 2 0 1 3 1 0 0 0 1 2 0 0 0 0 0 12 0 1259.6973 CON__Q9TTE1 CON__Q9TTE1 87 98 yes yes 2 0.00016518 134.68 By MS/MS By matching 3.33 0.471 2 1 2 1 32703000 25058000 0 7645300 + 5024 100 5232 21143;21144;21145 17792;17793 17793 2 21797000 0 1482800 GSVIQKALGGEDVR TKCNLLAEKQYGFCKGSVIQKALGGEDVRV KGSVIQKALGGEDVRVTCTLFQTQPVIPQP K G S V R V 1 1 0 1 0 1 1 3 0 1 1 1 0 0 0 1 0 0 0 2 0 0 14 1 1427.7732 CON__P12763 CON__P12763 232 245 yes yes 2 0.031493 91.245 By MS/MS 3.5 0.5 1 1 2 12790000 12790000 0 0 + 5025 55 5233 21146;21147 17794 17794 1 11770000 0 0 GSVPLSSSPPATHFPDETEITNPVPK PQKSVVSDLEADDVKGSVPLSSSPPATHFP THFPDETEITNPVPKKNVTVKKTAAKSQSS K G S P K K 1 0 1 1 0 0 2 1 1 1 1 1 0 1 6 4 3 0 0 2 0 0 26 0 2703.3392 P11388 P11388 1386 1411 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.00021786 53.751 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 54404000 0 5341200 49063000 5026 524 5234 21148;21149;21150 17795;17796 17795 2 0 2610700 10663000 GSVQYLPDWDK QNTAPTNSPTKAVPKGSVQYLPDWDKKREG AVPKGSVQYLPDWDKKREGSQEKDPVETFP K G S D K K 0 0 0 2 0 1 0 1 0 0 1 1 0 0 1 1 0 1 1 1 0 0 11 0 1306.6194 CON__Q58D62 CON__Q58D62 305 315 yes yes 2 0.005831 99.34 By MS/MS By matching By matching 5 1 2 2 1 2 1 28909000 14222000 9899300 4788000 + 5027 89 5235 21151;21152;21153;21154 17797 17797 1 11095000 3342200 716340 GSYGDLGGPIITTQVTIPK PQGGSGYDYSYAGGRGSYGDLGGPIITTQV DLGGPIITTQVTIPKDLAGSIIGKGGQRIK R G S P K D 0 0 0 1 0 1 0 4 0 3 1 1 0 0 2 1 3 0 1 1 0 0 19 0 1916.0255 P61978 P61978 378 396 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 1.5763E-12 168.67 By MS/MS By MS/MS By MS/MS 4.94 2.29 1 2 2 3 2 2 2 2 1 1 8 8 2605800000 35391000 1981000000 589430000 5028 1002 5236 21155;21156;21157;21158;21159;21160;21161;21162;21163;21164;21165;21166;21167;21168;21169;21170;21171 17798;17799;17800;17801;17802;17803;17804;17805;17806;17807;17808;17809;17810;17811;17812;17813;17814 17802 17 27611000 671760000 100430000 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG GHGSYGSGSSSGGYRGGSGGGGGGSSGGRG R G S Y R G 0 1 0 0 0 0 0 20 1 0 0 0 0 0 0 12 0 0 5 0 0 0 39 0 3311.3008 P04264;CON__P04264 P04264 550 588 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 2.5129E-287 303.18 By MS/MS By MS/MS By MS/MS 5.81 3.05 5 4 4 3 3 3 4 6 6 5 19 9 15 2505200000 2029300000 82336000 393490000 + 5029 413 5237 21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187;21188;21189;21190;21191;21192;21193;21194;21195;21196;21197;21198;21199;21200;21201;21202;21203;21204;21205;21206;21207;21208;21209;21210;21211;21212;21213;21214 17815;17816;17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845;17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868;17869;17870;17871;17872;17873 17817 59 2173000000 53190000 117640000 GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGR GGGSYGSGGGGGGGRGSYGSGGSSYGSGGG RGGSGGGGGGSSGGRGSGGGSSGGSIGGRG R G S G R G 0 2 0 0 0 0 0 30 1 0 0 0 0 0 0 15 0 0 5 0 0 0 53 1 4298.7127 P04264;CON__P04264 P04264 550 602 KRT1 Keratin, type II cytoskeletal 1 yes no 4 1.7457E-233 254.07 By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 9 190240000 190240000 0 0 + 5030 413 5238 21215;21216;21217;21218;21219;21220;21221;21222;21223 17874;17875;17876;17877;17878;17879;17880 17877 7 212300000 0 0 GSYVSIHSSGFR AGGDGAEAPAKKDVKGSYVSIHSSGFRDFL DVKGSYVSIHSSGFRDFLLKPELLRAIVDC K G S F R D 0 1 0 0 0 0 0 2 1 1 0 0 0 1 0 4 0 0 1 1 0 0 12 0 1295.6258 Q13838;O00148 Q13838 37 48 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2;3 1.6673E-05 153.97 By matching By MS/MS By MS/MS 4.46 1.82 1 1 1 4 3 1 1 1 1 2 10 267250000 7214200 14920000 245110000 5031 1271 5239 21224;21225;21226;21227;21228;21229;21230;21231;21232;21233;21234;21235;21236 17881;17882;17883;17884;17885 17883 5 5628300 4021900 36994000 GTAYTFFTPGNLK DYVHRIGRTARSTNKGTAYTFFTPGNLKQA NKGTAYTFFTPGNLKQARELIKVLEEANQA K G T L K Q 1 0 1 0 0 0 0 2 0 0 1 1 0 2 1 0 3 0 1 0 0 0 13 0 1415.7085 Q92841 Q92841 516 528 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 1.4296E-24 198.61 By MS/MS By MS/MS By MS/MS 4.83 2.03 1 3 2 2 2 1 1 1 6 5 524010000 12715000 254530000 256770000 5032 1725 5240 21237;21238;21239;21240;21241;21242;21243;21244;21245;21246;21247;21248 17886;17887;17888;17889;17890;17891;17892;17893;17894;17895;17896;17897 17888 12 14670000 105370000 48516000 GTAYVVYEDIFDAK GPIRQIRVGNTPETRGTAYVVYEDIFDAKN RGTAYVVYEDIFDAKNACDHLSGFNVCNRY R G T A K N 2 0 0 2 0 0 1 1 0 1 0 1 0 1 0 0 1 0 2 2 0 0 14 0 1589.7613 Q9Y3B4 Q9Y3B4 58 71 SF3B6 Splicing factor 3B subunit 6 yes yes 2 0.0012224 108.37 By MS/MS By MS/MS 8.67 0.471 1 2 1 2 17900000 2811800 0 15088000 5033 2265 5241 21249;21250;21251 17898;17899;17900 17898 3 1578300 0 3594800 GTDDFDFAGSFQGPR LEVHSKVSTKKSKRKGTDDFDFAGSFQGPR GTDDFDFAGSFQGPRKKKRNLNDSSLFVSA K G T P R K 1 1 0 3 0 1 0 3 0 0 0 0 0 3 1 1 1 0 0 0 0 0 15 0 1615.6903 Q03701 Q03701 950 964 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 1.3525E-73 247.31 By MS/MS 1.5 0.5 1 1 2 6498100 0 0 6498100 5034 1157 5242 21252;21253 17901 17901 1 0 0 1447200 GTDDSMTLQSQK GYRVKEIGSTMSGRKGTDDSMTLQSQKFQI GRKGTDDSMTLQSQKFQIGDYLDIAITPPN K G T Q K F 0 0 0 2 0 2 0 1 0 0 1 1 1 0 0 2 2 0 0 0 0 0 12 0 1309.582 O00422 O00422 115 126 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2 2.2037E-05 152.37 By MS/MS By MS/MS 7 0 2 1 1 35794000 0 1858600 33935000 5035 120 5243 21254;21255 17902;17903 17903 2 0 1067200 6021600 GTDIMYTGTLDCWR FDTVRRRMMMQSGRKGTDIMYTGTLDCWRK KGTDIMYTGTLDCWRKIARDEGGKAFFKGA K G T W R K 0 1 0 2 1 0 0 2 0 1 1 0 1 0 0 0 3 1 1 0 0 0 14 0 1687.7334 P05141 P05141 246 259 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.00046991 146.17 By MS/MS 6 0 1 1 13782000 0 0 13782000 5036 427 5244 21256 17904 17904 1 0 0 2062000 GTDLTDEQIR LSLSIDERDLRNFFRGTDLTDEQIRFLYKD RNFFRGTDLTDEQIRFLYKDENRTRYAFVM R G T I R F 0 1 0 2 0 1 1 1 0 1 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1146.5517 Q8IXT5 Q8IXT5 306 315 RBM12B RNA-binding protein 12B yes yes 2 0.00028968 119.86 By MS/MS 1.5 0.5 1 1 2 7847600 0 7847600 0 5037 1587 5245 21257;21258 17905 17905 1 0 3610800 0 GTDTQTPAVLSPSK SSKKVAFLRQNAPPKGTDTQTPAVLSPSKT KGTDTQTPAVLSPSKTQATLKPKDHHQPLG K G T S K T 1 0 0 1 0 1 0 1 0 0 1 1 0 0 2 2 3 0 0 1 0 0 14 0 1400.7147 P46087 P46087 722 735 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.00057334 143.97 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 22647000 0 8013300 14634000 5038 824 5246 21259;21260;21261 17906;17907 17907 2 0 3608500 3229000 GTDVNVFNTILTTR DSDARALYEAGERRKGTDVNVFNTILTTRS KGTDVNVFNTILTTRSYPQLRRVFQKYTKY K G T T R S 0 1 2 1 0 0 0 1 0 1 1 0 0 1 0 0 4 0 0 2 0 0 14 0 1549.81 P04083 P04083 215 228 ANXA1 Annexin A1 yes yes 2 9.4483E-25 199.43 By MS/MS By MS/MS By MS/MS 4.75 2.17 1 3 2 1 1 55630000 17962000 14717000 22952000 5039 410 5247 21262;21263;21264;21265 17908;17909;17910;17911 17908 4 20788000 5094500 3433800 GTEAAGAMFLEAIPMSIPPEVK LSKAVHKAVLTIDEKGTEAAGAMFLEAIPM MFLEAIPMSIPPEVKFNKPFVFLMIEQNTK K G T V K F 4 0 0 0 0 0 3 2 0 2 1 1 2 1 3 1 1 0 0 1 0 0 22 0 2258.1327 P01009 P01009 368 389 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.00017343 76.759 By MS/MS 9 0 1 1 3211500 3211500 0 0 5040 367 5248 21266 17912;17913 17912 2 1802600 0 0 GTEASSGTEAATGLEGEEK KTEIMSPLYQDEAPKGTEASSGTEAATGLE SSGTEAATGLEGEEKDGISDSDSSTSSEEE K G T E K D 3 0 0 0 0 0 5 4 0 0 1 1 0 0 0 2 3 0 0 0 0 0 19 0 1822.8068 Q8IY81 Q8IY81 594 612 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 7.7677E-115 264.55 By matching By MS/MS 3 0.816 1 1 1 1 2 13719000 0 1866900 11852000 5041 1590 5249 21267;21268;21269 17914 17914 1 0 840670 2036100 GTEPSTDGETSEAESNYSVSEHHDTILR KARKRKSRTTGSLPKGTEPSTDGETSEAES ESNYSVSEHHDTILRVTRRRQILIACSPVS K G T L R V 1 1 1 2 0 0 5 2 2 1 1 0 0 0 1 5 4 0 1 1 0 0 28 0 3047.3228 Q5QJE6 Q5QJE6 78 105 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 4 1.6704E-06 57.299 By MS/MS 8 0 1 1 5726800 0 0 5726800 5042 1442 5250 21270 17915 17915 1 0 0 877980 GTEVQVDDIKR IQLITAASLVCRKRKGTEVQVDDIKRVYSL RKRKGTEVQVDDIKRVYSLFLDESRSTQYM K G T K R V 0 1 0 2 0 1 1 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 1 1258.6517 Q9Y230 Q9Y230 418 428 RUVBL2 RuvB-like 2 yes yes 2;3 5.6084E-07 158.76 By MS/MS 4.33 0.471 2 1 3 25481000 0 0 25481000 5043 2228 5251 21271;21272;21273 17916;17917 17916 2 0 0 3999800 GTFATLSELHCDK LGAFSDGLAHLDNLKGTFATLSELHCDKLH LKGTFATLSELHCDKLHVDPENFRLLGNVL K G T D K L 1 0 0 1 1 0 1 1 1 0 2 1 0 1 0 1 2 0 0 0 0 0 13 0 1477.6871 P68871 P68871 84 96 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 2;3 0.00062718 119.34 By MS/MS 9 0 2 2 11501000 11501000 0 0 5044 1081 5252 21274;21275 17918;17919 17918 2 6455600 0 0 GTGASGSFK GLKSLVSKGTLVQTKGTGASGSFKLNKKAA TLVQTKGTGASGSFKLNKKAASGEAKPKVK K G T F K L 1 0 0 0 0 0 0 3 0 0 0 1 0 1 0 2 1 0 0 0 0 0 9 0 810.38718 P10412;Q02539;P16401;P22492;P16402;P16403 P16403 98 106 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1t;Histone H1.3;Histone H1.2 no no 2 0.032679 79.474 By MS/MS 6 0 5 5 0 0 0 0 5045 509;578;577 5253 21276;21277;21278;21279;21280 17920;17921;17922;17923;17924 17920 5 0 0 0 GTGASGSFKLNK GLKSLVSKGTLVQTKGTGASGSFKLNKKAA QTKGTGASGSFKLNKKAASGEAKPKVKKAG K G T N K K 1 0 1 0 0 0 0 3 0 0 1 2 0 1 0 2 1 0 0 0 0 0 12 1 1165.6091 P10412;Q02539;P16401;P16402;P16403 P16403 98 109 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2 0.053255 99.257 By matching By MS/MS 6.33 0.471 2 1 1 2 28903000 0 9068700 19834000 5046 509;578;577 5254 21281;21282;21283 17925 17925 1 0 3139300 3082600 GTGASGSFKLNKK GLKSLVSKGTLVQTKGTGASGSFKLNKKAA TKGTGASGSFKLNKKAASGEAKPKVKKAGG K G T K K A 1 0 1 0 0 0 0 3 0 0 1 3 0 1 0 2 1 0 0 0 0 0 13 2 1293.7041 P10412;Q02539;P16401;P16402;P16403 P16403 98 110 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 3 0.014637 69.602 By MS/MS 6 0 1 1 2687400 0 0 2687400 5047 509;578;577 5255 21284 17926 17926 1 0 0 402060 GTGEAEEEYVGPR GNAVRAGVREKRRGRGTGEAEEEYVGPRLS GRGTGEAEEEYVGPRLSRRILQQARQQQEE R G T P R L 1 1 0 0 0 0 4 3 0 0 0 0 0 0 1 0 1 0 1 1 0 0 13 0 1392.6157 Q13895 Q13895 41 53 BYSL Bystin yes yes 2 4.2809E-17 188.87 By matching By MS/MS 4.33 0.471 2 1 1 2 23074000 2803300 0 20271000 5048 1276 5256 21285;21286;21287 17927;17928 17927 2 2187100 0 2913200 GTGIAAQTAGIAAAAR AFASCGTEGFRNAKKGTGIAAQTAGIAAAA TGIAAQTAGIAAAARAKQKGVIHIRVVVKG K G T A R A 7 1 0 0 0 1 0 3 0 2 0 0 0 0 0 0 2 0 0 0 0 0 16 0 1398.7579 P82912 P82912 123 138 MRPS11 28S ribosomal protein S11, mitochondrial yes yes 2 6.7289E-05 108.77 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 17704000 0 4698200 13006000 5049 1100 5257 21288;21289;21290 17929;17930;17931 17929 3 0 2697700 2206300 GTGIVSAPVPK GRCGSVLVRLIPAPRGTGIVSAPVPKKLLM PAPRGTGIVSAPVPKKLLMMAGIDDCYTSA R G T P K K 1 0 0 0 0 0 0 2 0 1 0 1 0 0 2 1 1 0 0 2 0 0 11 0 1024.5917 P15880 P15880 201 211 RPS2 40S ribosomal protein S2 yes yes 2 0.026123 80.787 By MS/MS 6 0 1 1 149660000 0 149660000 0 5050 571 5258 21291 17932 17932 1 0 51807000 0 GTGQSDDSDIWDDTALIK GGGVPEQEDSVLFRRGTGQSDDSDIWDDTA QSDDSDIWDDTALIKAYDKAVASFKHALKN R G T I K A 1 0 0 5 0 1 0 2 0 2 1 1 0 0 0 2 2 1 0 0 0 0 18 0 1935.8698 Q16637 Q16637 24 41 SMN1 Survival motor neuron protein yes yes 2 3.3805E-05 100.54 By matching By MS/MS 6 0 2 1 1 7107800 0 760580 6347200 5051 1394 5259 21292;21293 17933 17933 1 0 263290 949610 GTGSGLIGASGATMPTDTSK TATKGVPATNPAPGKGTGSGLIGASGATMP LIGASGATMPTDTSKSEKLASRAVAPPTPA K G T S K S 2 0 0 1 0 0 0 5 0 1 1 1 1 0 1 3 4 0 0 0 0 0 20 0 1807.8622 Q14781 Q14781 391 410 CBX2 Chromobox protein homolog 2 yes yes 2 1.9577E-05 92.265 By MS/MS 3 0 1 1 5689600 0 0 5689600 5052 1319 5260 21294 17934 17934 1 0 0 1103500 GTGVVTSVPSDSPDDIAALR KVIYVLPMLTIKEDKGTGVVTSVPSDSPDD TSVPSDSPDDIAALRDLKKKQALRAKYGIR K G T L R D 2 1 0 3 0 0 0 2 0 1 1 0 0 0 2 3 2 0 0 3 0 0 20 0 1955.98 Q9P2J5 Q9P2J5 385 404 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 4.3298E-06 98.439 By MS/MS 2 0 1 1 5455600 0 0 5455600 5053 2124 5261 21295 17935 17935 1 0 0 1232900 GTIEILSDVQLIK TSFFQALGITTKISRGTIEILSDVQLIKTG SRGTIEILSDVQLIKTGDKVGASEATLLNM R G T I K T 0 0 0 1 0 1 1 1 0 3 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1427.8235 P05388;Q8NHW5 P05388 150 162 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 2.3214E-17 192.12 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 222690000 0 141090000 81601000 5054 432 5262 21296;21297;21298;21299;21300 17936;17937;17938 17937 3 0 48200000 12129000 GTKPFKPLEQLMGVFPAASGNFLPPSWR SDFEGIADMPSDFEKGTKPFKPLEQLMGVF VFPAASGNFLPPSWRKLMSDPDSSIIDFYP K G T W R K 2 1 1 0 0 1 1 3 0 0 3 2 1 3 5 2 1 1 0 1 0 0 28 2 3071.6055 Q9H0D6 Q9H0D6 588 615 XRN2 5-3 exoribonuclease 2 yes yes 4 0.0010026 42.828 By MS/MS 2 0 1 1 1106700 0 0 1106700 5055 1960 5263 21301 17939 17939 1 0 0 250100 GTLDPVEK ITRARFEELNADLFRGTLDPVEKALRDAKL LNADLFRGTLDPVEKALRDAKLDKSQIHDI R G T E K A 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 857.44945 P11142 P11142 312 319 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 0.032544 77.282 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 193530000 0 70866000 122670000 5056 517 5264 21302;21303;21304;21305 17940;17941 17940 2 0 30372000 23791000 GTLGGLFSQILQGEDIVR LVNNALLSIFKMDAKGTLGGLFSQILQGED GGLFSQILQGEDIVRERAIKFLSTKLKTLP K G T V R E 0 1 0 1 0 2 1 4 0 2 3 0 0 1 0 1 1 0 0 1 0 0 18 0 1902.0211 Q9BZZ5 Q9BZZ5 131 148 API5 Apoptosis inhibitor 5 yes yes 2;3 1.6535E-30 200.21 By MS/MS 3.2 0.748 1 2 2 5 43852000 0 0 43852000 5057 1947 5265 21306;21307;21308;21309;21310 17942;17943;17944;17945;17946 17945 5 0 0 7922400 GTLNSNAAYEQSHFFNK KRTEMEYYTHEKQEKGTLNSNAAYEQSHFF LNSNAAYEQSHFFNKNYTEDIFPVTPPELE K G T N K N 2 0 3 0 0 1 1 1 1 0 1 1 0 2 0 2 1 0 1 0 0 0 17 0 1926.886 Q5T3J3 Q5T3J3 706 722 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 yes yes 3 0.0050614 58.159 By MS/MS 6 0 1 1 3632600 0 3632600 0 5058 1450 5266 21311 17947 17947 1 0 1257500 0 GTLPAVEPFQR THPSESKINLRIQTRGTLPAVEPFQRGLNE IQTRGTLPAVEPFQRGLNELMNVCQHVLDK R G T Q R G 1 1 0 0 0 1 1 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1213.6455 P0DPB6 P0DPB6 88 98 yes yes 2 0.0077987 95.502 By MS/MS By MS/MS 8.67 0.471 1 2 2 1 27929000 0 12450000 15479000 5059 506 5267 21312;21313;21314 17948;17949 17949 2 0 8695700 4944700 GTLSAELTAAHFGGGGGLLHK KHNDIVDSDSDAEDRGTLSAELTAAHFGGG LTAAHFGGGGGLLHKKTQQEGEEREKPKSR R G T H K K 3 0 0 0 0 0 1 6 2 0 4 1 0 1 0 1 2 0 0 0 0 0 21 0 1993.0381 P78316 P78316 154 174 NOP14 Nucleolar protein 14 yes yes 3 0.068363 23.912 By MS/MS 2 0 1 1 7349100 0 0 7349100 5060 1083 5268 21315 17950 17950 1 0 0 1660700 GTLSDEHAGVISVLAQQAAK GVLCTDSQGLNLGCRGTLSDEHAGVISVLA EHAGVISVLAQQAAKLTSDPTDIPVVCLES R G T A K L 4 0 0 1 0 2 1 2 1 1 2 1 0 0 0 2 1 0 0 2 0 0 20 0 1994.0433 O43504 O43504 35 54 LAMTOR5 Ragulator complex protein LAMTOR5 yes yes 3 3.0831E-06 93.381 By MS/MS By MS/MS 10 0 2 1 1 9600800 0 7080500 2520300 5061 200 5269 21316;21317 17951;17952 17951 2 0 35821000 5512200 GTLSGWILSK PVPTGEVYFADSFDRGTLSGWILSKAKKDD DSFDRGTLSGWILSKAKKDDTDDEIAKYDG R G T S K A 0 0 0 0 0 0 0 2 0 1 2 1 0 0 0 2 1 1 0 0 0 0 10 0 1060.5917 P27824 P27824 78 87 CANX Calnexin yes yes 2 0.029785 78.06 By MS/MS 3.5 0.5 1 1 2 17744000 0 17744000 0 5062 684 5270 21318;21319 17953;17954 17953 2 0 6465000 0 GTLVQTKGTGASGSFK NNSRIKLGLKSLVSKGTLVQTKGTGASGSF TLVQTKGTGASGSFKLNKKAASGEAKPKVK K G T F K L 1 0 0 0 0 1 0 4 0 0 1 2 0 1 0 2 3 0 0 1 0 0 16 1 1537.81 P10412;Q02539;P16401;P16402;P16403 P16403 91 106 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2;3 1.8551E-17 186.17 By MS/MS By MS/MS 6.14 0.639 1 4 2 4 3 192870000 0 45500000 147370000 5063 509;578;577 5271 21320;21321;21322;21323;21324;21325;21326 17955;17956;17957;17958;17959;17960 17956 6 0 18013000 22642000 GTMDDISQEEGSSQGEDSVSGSQR LQACKMQDIKLPLSKGTMDDISQEEGSSQG EGSSQGEDSVSGSQRISSIYAREALIEIDY K G T Q R I 0 1 0 3 0 3 3 4 0 1 0 0 1 0 0 6 1 0 0 1 0 0 24 0 2485.0147 Q14683 Q14683 945 968 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 6.0011E-248 315.13 By MS/MS 1.5 0.5 1 1 2 13886000 0 0 13886000 5064 1312 5272 21327;21328 17961 17961 1 0 0 3072000 GTMTTGHNVADLVVILK EVQIEEVRQVGSYKKGTMTTGHNVADLVVI MTTGHNVADLVVILKILPTLEAVAALGNKV K G T L K I 1 0 1 1 0 0 0 2 1 1 2 1 1 0 0 0 3 0 0 3 0 0 17 0 1767.9553 Q12905 Q12905 111 127 ILF2 Interleukin enhancer-binding factor 2 yes yes 2;3 2.3883E-09 170.56 By MS/MS By MS/MS 5 1.12 1 1 4 1 1 3 5 159350000 0 95896000 63455000 5065 1210 5273;5274 21329;21330;21331;21332;21333;21334;21335;21336 17962;17963;17964;17965;17966;17967 17963 570 6 0 25112000 9144600 GTNESLER RRQVQSLTCEVDALKGTNESLERQMREMEE CEVDALKGTNESLERQMREMEENFAVEAAN K G T E R Q 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 1 1 0 0 0 0 0 8 0 904.42502 P08670;P14136 P08670 335 342 VIM;GFAP Vimentin;Glial fibrillary acidic protein yes no 2 8.182E-09 166.05 By MS/MS By MS/MS 3.75 1.2 1 3 2 1 1 6 2 26019000 0 18501000 7518600 5066 476 5275 21337;21338;21339;21340;21341;21342;21343;21344 17968;17969;17970;17971;17972;17973;17974;17975;17976;17977;17978;17979;17980;17981;17982;17983;17984;17985;17986;17987;17988;17989;17990;17991;17992;17993 17972 26 0 5901400 1397600 GTNYLADVFEK MKENFPNFLSACDKKGTNYLADVFEKKDKN CDKKGTNYLADVFEKKDKNEDKKIDFSEFL K G T E K K 1 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 1 0 0 11 0 1255.6085 P31151 P31151 51 61 S100A7 Protein S100-A7 yes yes 2 0.00032844 131.09 By MS/MS By matching 8.14 1.64 1 1 2 1 2 4 3 41877000 28251000 0 13626000 5067 718 5276 21345;21346;21347;21348;21349;21350;21351 17994;17995;17996 17994 3 29559000 0 7257700 GTNYLADVFEKK MKENFPNFLSACDKKGTNYLADVFEKKDKN DKKGTNYLADVFEKKDKNEDKKIDFSEFLS K G T K K D 1 0 1 1 0 0 1 1 0 0 1 2 0 1 0 0 1 0 1 1 0 0 12 1 1383.7034 P31151 P31151 51 62 S100A7 Protein S100-A7 yes yes 2;3 0.0057082 107.06 By MS/MS By matching 8.4 1.36 1 2 2 2 3 9 1 36857000 34981000 0 1876000 5068 718 5277 21352;21353;21354;21355;21356;21357;21358;21359;21360;21361 17997;17998;17999 17999 3 34147000 0 4103000 GTPGPPPAHGAALQPHPR QPEPARAPQGRAIPRGTPGPPPAHGAALQP GPPPAHGAALQPHPRVNFCPLPSEQCYQAP R G T P R V 3 1 0 0 0 1 0 3 2 0 1 0 0 0 6 0 1 0 0 0 0 0 18 0 1756.9121 Q15654 Q15654 26 43 TRIP6 Thyroid receptor-interacting protein 6 yes yes 3;4 0.00015322 91.789 By MS/MS By MS/MS 4.25 0.433 3 1 2 2 13382000 0 2393900 10988000 5069 1378 5278 21362;21363;21364;21365 18000;18001;18002 18001 2 0 712300 1794700 GTPQQIDYAR PPPNADPNMKLFTIRGTPQQIDYARQLIEE LFTIRGTPQQIDYARQLIEEKIGGPVNPLG R G T A R Q 1 1 0 1 0 2 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 10 0 1147.5622 Q96AE4 Q96AE4 431 440 FUBP1 Far upstream element-binding protein 1 yes yes 2 0.0152 85.731 By MS/MS 3 0 1 1 6653000 0 6653000 0 5070 1750 5279 21366 18003 18003 1 0 2836200 0 GTQEVAPPTPLTPTSHTANTSPRPVSGMER PATRGLPSTASGRLRGTQEVAPPTPLTPTS HTANTSPRPVSGMERERKVSMRLHRGAPVN R G T E R E 2 2 1 0 0 1 2 2 1 0 1 0 1 0 6 3 6 0 0 2 0 0 30 1 3115.5357 P48730 P48730 336 365 CSNK1D Casein kinase I isoform delta yes yes 4 0.00040637 43.612 By MS/MS 5 0 1 1 4835600 0 4835600 0 5071 848 5280 21367 18004 18004 1 0 1246500 0 GTQGAEEVLR AIYLEKLKTISLVIRGTQGAEEVLRAHEEQ SLVIRGTQGAEEVLRAHEEQLKEAQAVPAT R G T L R A 1 1 0 0 0 1 2 2 0 0 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1058.5356 Q15149 Q15149 1234 1243 PLEC Plectin yes yes 2 0.00026954 123.16 By MS/MS 1 0 1 1 15480000 0 15480000 0 5072 1348 5281 21368 18005 18005 1 0 7566400 0 GTQGATAGASSELDASK YRGRKKGKKKDQIGKGTQGATAGASSELDA QGATAGASSELDASKTVSSPPTSPRPGSAA K G T S K T 4 0 0 1 0 1 1 3 0 0 1 1 0 0 0 3 2 0 0 0 0 0 17 0 1549.722 O76094 O76094 601 617 SRP72 Signal recognition particle subunit SRP72 yes yes 2 1.0198E-06 159.08 By MS/MS By MS/MS 3 0 2 1 1 16190000 0 3644900 12545000 5073 296 5282 21369;21370 18006;18007 18007 2 0 1553800 2433200 GTQNIPAGKPSLQTSSAR GSVGSTVTTPPPLVRGTQNIPAGKPSLQTS NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ R G T A R M 2 1 1 0 0 2 0 2 0 1 1 1 0 0 2 3 2 0 0 0 0 0 18 1 1811.949 Q86YP4 Q86YP4 196 213 GATAD2A Transcriptional repressor p66-alpha yes yes 3 0.00035428 79.88 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 19156000 0 10427000 8728800 5074 1563 5283 21371;21372;21373 18008;18009 18008 2 0 4263000 1693000 GTQTYSVLEGDPSENYSK YDRVVRREICRIITKGTQTYSVLEGDPSEN TYSVLEGDPSENYSKYLLSLKEKEEDSSGH K G T S K Y 0 0 1 1 0 1 2 2 0 0 1 1 0 0 1 3 2 0 2 1 0 0 18 0 1973.8854 P52701 P52701 520 537 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.0003488 96.734 By MS/MS 2 0 1 1 1929900 0 1929900 0 5075 911 5284 21374 18010 18010 1 0 869070 0 GTSFDAAATSGGSASSEK CTVKCDEKVKVFSVRGTSFDAAATSGGSAS FDAAATSGGSASSEKASSTSPVEISEWLDQ R G T E K A 4 0 0 1 0 0 1 3 0 0 0 1 0 1 0 5 2 0 0 0 0 0 18 0 1629.7118 P13804 P13804 170 187 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes yes 2 1.738E-08 123.02 By MS/MS 6 0 1 1 5631600 0 0 5631600 5076 552 5285 21375 18011 18011 1 0 0 842540 GTSLMEDDEEPIVEDVMMSSEGR MQTEHHQTPLDYNRRGTSLMEDDEEPIVED EEPIVEDVMMSSEGRIEDLNEGMDFDTMDI R G T G R I 0 1 0 3 0 0 5 2 0 1 1 0 3 0 1 3 1 0 0 2 0 0 23 0 2555.0713 Q8N3U4 Q8N3U4 1159 1181 STAG2 Cohesin subunit SA-2 yes yes 2 4.6644E-29 183.01 By MS/MS 2 0 1 1 2186700 0 0 2186700 5077 1603 5286 21376 18012 18012 1 0 0 494140 GTSTHDGIAIAYATLEYFIR KATSQSLVILDELGRGTSTHDGIAIAYATL DGIAIAYATLEYFIRDVKSLTLFVTHYPPV R G T I R D 3 1 0 1 0 0 1 2 1 3 1 0 0 1 0 1 3 0 2 0 0 0 20 0 2198.1008 P20585 P20585 980 999 MSH3 DNA mismatch repair protein Msh3 yes yes 3 8.8146E-18 166.48 By MS/MS 2.5 0.5 1 1 2 2893600 0 0 2893600 5078 616 5287 21377;21378 18013 18013 1 0 0 636600 GTSYQSPHGIPIDLLDR PVLIMATNRGITRIRGTSYQSPHGIPIDLL SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK R G T D R L 0 1 0 2 0 1 0 2 1 2 2 0 0 0 2 2 1 0 1 0 0 0 17 0 1867.9428 Q9Y230 Q9Y230 337 353 RUVBL2 RuvB-like 2 yes yes 2 0.001327 91.307 By MS/MS 6.5 1.12 1 1 1 1 4 300440000 0 0 300440000 5079 2228 5288 21379;21380;21381;21382 18014 18014 1 0 0 43550000 GTTATSAQANSTPTSVASVVTSAESPASR SLLVNIPQPTPASLKGTTATSAQANSTPTS SVASVVTSAESPASRQAAAKLALRKQLEKT K G T S R Q 6 1 1 0 0 1 1 1 0 0 0 0 0 0 2 7 6 0 0 3 0 0 29 0 2735.321 Q86YP4 Q86YP4 316 344 GATAD2A Transcriptional repressor p66-alpha yes yes 3 3.4517E-11 83.788 By MS/MS 3 0 1 1 3655900 0 3655900 0 5080 1563 5289 21383 18015 18015 1 0 1558500 0 GTTLTAAEVGIIESIHLK ELEDFDKDGDEDECKGTTLTAAEVGIIESI LTAAEVGIIESIHLKNFMCHSMLGPFKFGS K G T L K N 2 0 0 0 0 0 2 2 1 3 2 1 0 0 0 1 3 0 0 1 0 0 18 0 1852.0306 Q96SB8 Q96SB8 37 54 SMC6 Structural maintenance of chromosomes protein 6 yes yes 3 0.030596 38.227 By MS/MS 2 0 1 1 3160000 0 0 3160000 5081 1833 5290 21384 18016 18016 1 0 0 714090 GTVEGFEPADNK TLKKYDGRTKPIPKKGTVEGFEPADNKCLL PKKGTVEGFEPADNKCLLRATDGKKKISTV K G T N K C 1 0 1 1 0 0 2 2 0 0 0 1 0 1 1 0 1 0 0 1 0 0 12 0 1262.5779 P37108 P37108 44 55 SRP14 Signal recognition particle 14 kDa protein yes yes 2 0.00082761 120.09 By matching By MS/MS 7.67 0.471 1 2 1 2 22252000 0 2329800 19923000 5082 766 5291 21385;21386;21387 18017;18018 18018 2 0 1060000 3216800 GTVEPQLEAR TGEVEVVIQDPMGQKGTVEPQLEARGDSTY PMGQKGTVEPQLEARGDSTYRCSYQPTMEG K G T A R G 1 1 0 0 0 1 2 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 10 0 1098.5669 P21333 P21333 428 437 FLNA Filamin-A yes yes 2 0.017878 84.213 By MS/MS 1 0 1 1 4688000 0 4688000 0 5083 623 5292 21388 18019 18019 1 0 2291400 0 GTVGEPTYDAEFQHFLR DHITFAMLLARIKLKGTVGEPTYDAEFQHF VGEPTYDAEFQHFLRGNEIVLSAGSTPRIQ K G T L R G 1 1 0 1 0 1 2 2 1 0 1 0 0 2 1 0 2 0 1 1 0 0 17 0 1965.9221 Q14204 Q14204 3894 3910 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0010402 74.772 By MS/MS 1 0 1 1 2687000 0 2687000 0 5084 1292 5293 21389 18020 18020 1 0 1313400 0 GTVGFSGAELENLVNQAALK KIKFDQSVDPEIIARGTVGFSGAELENLVN SGAELENLVNQAALKAAVDGKEMVTMKELE R G T L K A 3 0 2 0 0 1 2 3 0 0 3 1 0 1 0 1 1 0 0 2 0 0 20 0 2017.048 Q96TA2 Q96TA2 537 556 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes yes 2;3 1.3105E-18 174.39 By MS/MS 4 0 2 2 16518000 0 16518000 0 5085 1842 5294 21390;21391 18021;18022 18021 2 0 5481800 0 GTVLAEDQLAQMSK AIAKKKLAEAKYKERGTVLAEDQLAQMSKQ RGTVLAEDQLAQMSKQLDMFKTNLEEFASK R G T S K Q 2 0 0 1 0 2 1 1 0 0 2 1 1 0 0 1 1 0 0 1 0 0 14 0 1489.7446 Q96H20 Q96H20 25 38 SNF8 Vacuolar-sorting protein SNF8 yes yes 2 0.0016572 105.2 By MS/MS 7 0 1 1 10377000 0 10377000 0 5086 1794 5295 21392 18023 18023 1 0 5958800 0 GTVLDQVPVNPSLYLIK QHGWKEGNGPVTQWKGTVLDQVPVNPSLYL VLDQVPVNPSLYLIKYDGFDCVYGLELNKD K G T I K Y 0 0 1 1 0 1 0 1 0 1 3 1 0 0 2 1 1 0 1 3 0 0 17 0 1855.0455 Q9Y657;Q5JUX0 Q9Y657 74 90 SPIN1;SPIN3 Spindlin-1;Spindlin-3 yes no 2 0.024989 59.57 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 38427000 0 1827100 36600000 5087 2306 5296 21393;21394;21395 18024;18025;18026 18024 3 0 1049100 5710100 GTVVTGTLER PFLLPVEAVYSVPGRGTVVTGTLERGILKK SVPGRGTVVTGTLERGILKKGDECELLGHS R G T E R G 0 1 0 0 0 0 1 2 0 0 1 0 0 0 0 0 3 0 0 2 0 0 10 0 1031.5611 P49411 P49411 272 281 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.00049726 128 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 33950000 0 7489500 26461000 5088 856 5297 21396;21397;21398 18027;18028 18028 2 0 1930600 3742500 GTWVQLKR RVKENDQKKKEAKEKGTWVQLKRQPAPPRE KKEAKEKGTWVQLKRQPAPPREAHFVRTNG K G T K R Q 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 8 1 986.56615 P46778 P46778 123 130 RPL21 60S ribosomal protein L21 yes yes 2 0.0027213 114.19 By MS/MS 6.5 0.5 1 1 2 26273000 0 26273000 0 5089 829 5298 21399;21400 18029 18029 1 0 14846000 0 GTYFPTWEGLFWEK ALGGVEGILEHTLFKGTYFPTWEGLFWEKA KGTYFPTWEGLFWEKASGFEESMKWKKLTN K G T E K A 0 0 0 0 0 0 2 2 0 0 1 1 0 2 1 0 2 2 1 0 0 0 14 0 1759.8246 Q6P2Q9 Q6P2Q9 1492 1505 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0012257 108.35 By MS/MS 1 0 1 1 38436000 0 0 38436000 5090 1490 5299 21401 18030 18030 1 0 0 8281700 GTYIHALDNGLFTLGAPHK NFGEISGTIAIEMDKGTYIHALDNGLFTLG HALDNGLFTLGAPHKEVDEGPSPPEQFTAV K G T H K E 2 0 1 1 0 0 0 3 2 1 3 1 0 1 1 0 2 0 1 0 0 0 19 0 2024.048 Q14331 Q14331 67 85 FRG1 Protein FRG1 yes yes 4 0.012361 44.587 By MS/MS 6 0 1 1 8092300 0 0 8092300 5091 1300 5300 21402 18031 18031 1 0 0 1210700 GVAALTSDPAVQAIVLDTASDVLDK RDVAGGLRSLAQAARGVAALTSDPAVQAIV VQAIVLDTASDVLDKASSLIEEAKKAAGHP R G V D K A 5 0 0 4 0 1 0 1 0 1 3 1 0 0 1 2 2 0 0 4 0 0 25 0 2468.301 Q9Y490 Q9Y490 1137 1161 TLN1 Talin-1 yes yes 3 5.8628E-09 88.239 By MS/MS 1 0 1 1 2938400 0 0 2938400 5092 2284 5301 21403 18032 18032 1 0 0 633120 GVAGVPAEFSIWTR GGAHKVRAGGTGLERGVAGVPAEFSIWTRE RGVAGVPAEFSIWTREAGAGGLSIAVEGPS R G V T R E 2 1 0 0 0 0 1 2 0 1 0 0 0 1 1 1 1 1 0 2 0 0 14 0 1488.7725 Q14315 Q14315 2327 2340 FLNC Filamin-C yes yes 2 0.00046014 138.25 By MS/MS 1.5 0.5 1 1 2 24925000 0 24925000 0 5093 1298 5302 21404;21405 18033;18034 18033 2 0 11923000 0 GVAINFVK LYIHRIGRSGRYGRKGVAINFVKNDDIRIL SGRYGRKGVAINFVKNDDIRILRDIEQYYS K G V V K N 1 0 1 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 2 0 0 8 0 846.49634 P38919 P38919 375 382 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.019945 84.359 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 58499000 0 19222000 39277000 5094 775 5303 21406;21407;21408;21409 18035;18036 18036 2 0 4954900 5665000 GVAINMVTEEDKR NYIHRIGRGGRFGRKGVAINMVTEEDKRTL RKGVAINMVTEEDKRTLRDIETFYNTSIEE K G V K R T 1 1 1 1 0 0 2 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 13 1 1460.7293 P60842 P60842 370 382 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2;3 0.00039265 147.74 By MS/MS By MS/MS 5 0 4 2 2 40424000 0 8732400 31692000 5095 967 5304 21410;21411;21412;21413 18037;18038;18039;18040 18040 4 0 2251000 4420400 GVALHRPDVYLLPPAR TDLPSPLKQTISRPKGVALHRPDVYLLPPA VALHRPDVYLLPPAREQLNLRESATITCLV K G V A R E 2 2 0 1 0 0 0 1 1 0 3 0 0 0 3 0 0 0 1 2 0 0 16 1 1773.005 P01871;P0DOX6 P01871 323 338 IGHM Ig mu chain C region yes no 3 7.7485E-06 128.9 By MS/MS 9.5 0.5 1 1 2 10020000 10020000 0 0 5096 385 5305 21414;21415 18041 18041 1 9687800 0 0 GVAMNPVEHPFGGGNHQHIGK YHKYKAKRNCWPRVRGVAMNPVEHPFGGGN VEHPFGGGNHQHIGKPSTIRRDAPAGRKVG R G V G K P 1 0 2 0 0 1 1 5 3 1 0 1 1 1 2 0 0 0 0 2 0 0 21 0 2182.049 P62917 P62917 201 221 RPL8 60S ribosomal protein L8 yes yes 4;5 0.0028899 52.814 By MS/MS By MS/MS 6.25 0.433 6 2 3 5 287540000 0 34098000 253450000 5097 1052 5306;5307 21416;21417;21418;21419;21420;21421;21422;21423 18042;18043;18044 18043 507 3 0 11803000 38447000 GVAMNPVEHPFGGGNHQHIGKPSTIR YHKYKAKRNCWPRVRGVAMNPVEHPFGGGN GGGNHQHIGKPSTIRRDAPAGRKVGLIAAR R G V I R R 1 1 2 0 0 1 1 5 3 2 0 1 1 1 3 1 1 0 0 2 0 0 26 1 2736.3667 P62917 P62917 201 226 RPL8 60S ribosomal protein L8 yes yes 3;4;5 3.5024E-25 121.62 By MS/MS By MS/MS 6.12 0.781 1 1 9 5 7 9 840760000 0 197550000 643210000 5098 1052 5308;5309 21424;21425;21426;21427;21428;21429;21430;21431;21432;21433;21434;21435;21436;21437;21438;21439 18045;18046;18047;18048;18049;18050;18051;18052;18053;18054;18055;18056;18057;18058;18059 18053 507 15 0 70411000 99164000 GVAPLWMR APKMYKEEGLKAFYKGVAPLWMRQIPYTMM GLKAFYKGVAPLWMRQIPYTMMKFACFERT K G V M R Q 1 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 0 0 8 0 928.49529 Q00325 Q00325 219 226 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 2 0.00027354 133.99 By MS/MS By MS/MS 6 0 2 1 1 17814000 0 6502700 11312000 5099 1121 5310 21440;21441 18060;18061 18061 2 0 2251000 1692400 GVAVDGLNQLTVTTGSEGLLK RGSFGKDQAHKGSVRGVAVDGLNQLTVTTG LNQLTVTTGSEGLLKFWNFKNKILIHSVSL R G V L K F 1 0 1 1 0 1 1 4 0 0 4 1 0 0 0 1 3 0 0 3 0 0 21 0 2071.1161 Q8NI36 Q8NI36 544 564 WDR36 WD repeat-containing protein 36 yes yes 2 1.5169E-28 193.06 By MS/MS 2 0 1 1 2831500 0 2831500 0 5100 1648 5311 21442 18062 18062 1 0 1275100 0 GVDEATIIDILTK PSSDVAALHKAIMVKGVDEATIIDILTKRN VKGVDEATIIDILTKRNNAQRQQIKAAYLQ K G V T K R 1 0 0 2 0 0 1 1 0 3 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1386.7606 P04083 P04083 59 71 ANXA1 Annexin A1 yes yes 2 0.011787 86.313 By matching By MS/MS By MS/MS 5.67 0.471 1 2 1 1 1 12535000 371650 2960800 9202200 5101 410 5312 21443;21444;21445 18063;18064 18064 2 297740 1024900 1376800 GVDEATIIDILTKR PSSDVAALHKAIMVKGVDEATIIDILTKRN KGVDEATIIDILTKRNNAQRQQIKAAYLQE K G V K R N 1 1 0 2 0 0 1 1 0 3 1 1 0 0 0 0 2 0 0 1 0 0 14 1 1542.8617 P04083 P04083 59 72 ANXA1 Annexin A1 yes yes 3 0.01416 58.071 By MS/MS 6 0 1 1 1103900 0 1103900 0 5102 410 5313 21446 18065 18065 1 0 382140 0 GVDEVTIVNILTNR AERDALNIETAIKTKGVDEVTIVNILTNRS KGVDEVTIVNILTNRSNAQRQDIAFAYQRR K G V N R S 0 1 2 1 0 0 1 1 0 2 1 0 0 0 0 0 2 0 0 3 0 0 14 0 1541.8413 P07355 P07355 50 63 ANXA2 Annexin A2 yes yes 2;3 4.3393E-34 210.35 By MS/MS By MS/MS By MS/MS 5.08 1.98 2 1 3 5 1 1 5 2 6 75099000 6506500 6966200 61626000 5103 459 5314 21447;21448;21449;21450;21451;21452;21453;21454;21455;21456;21457;21458;21459 18066;18067;18068;18069;18070;18071;18072;18073;18074 18073 8 5713200 2411500 9393400 GVDKEPLNLFYIER DAAQNYTVFYSISGRGVDKEPLNLFYIERD RGVDKEPLNLFYIERDTGNLFCTRPVDREE R G V E R D 0 1 1 1 0 0 2 1 0 1 2 1 0 1 1 0 0 0 1 1 0 0 14 1 1691.8883 Q14574 Q14574 177 190 DSC3 Desmocollin-3 yes yes 3 0.0012848 87.566 By MS/MS 9 0 1 1 4617800 4617800 0 0 5104 1306 5315 21460 18075 18075 1 2592000 0 0 GVDLQENNPASR KNEPQNATGAPGRNRGVDLQENNPASRSQC RNRGVDLQENNPASRSQCCSN_________ R G V S R S 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 12 0 1298.6215 P51148 P51148 199 210 RAB5C Ras-related protein Rab-5C yes yes 2 0.00055569 124.67 By MS/MS 7 0 1 1 4611600 0 4611600 0 5105 889 5316 21461 18076 18076 1 0 2648000 0 GVDYNAEIPFEK RAAGIEIQKKRKRKRGVDYNAEIPFEKKPA RKRGVDYNAEIPFEKKPALGFYDTSEENYQ R G V E K K 1 0 1 1 0 0 2 1 0 1 0 1 0 1 1 0 0 0 1 1 0 0 12 0 1380.6561 Q99459 Q99459 207 218 CDC5L Cell division cycle 5-like protein yes yes 2 0.025777 80.916 By MS/MS 2 0 1 1 9020500 0 9020500 0 5106 1843 5317 21462 18077 18077 1 0 4062100 0 GVEAVAIHGGKDQEER KKADVDAIHEYLLLKGVEAVAIHGGKDQEE VEAVAIHGGKDQEERTKAIEAFREGKKDVL K G V E R T 2 1 0 1 0 1 3 3 1 1 0 1 0 0 0 0 0 0 0 2 0 0 16 1 1693.8384 Q9UJV9 Q9UJV9 456 471 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.023347 48.547 By MS/MS 3 0 1 1 1256400 0 1256400 0 5107 2171 5318 21463 18078 18078 1 0 535610 0 GVEAVGSYAENQR IMSYQIWVDYINFLKGVEAVGSYAENQRIT LKGVEAVGSYAENQRITAVRRVYQRGCVNP K G V Q R I 2 1 1 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 1 2 0 0 13 0 1378.6477 Q12996 Q12996 152 164 CSTF3 Cleavage stimulation factor subunit 3 yes yes 2 4.1826E-18 195.27 By MS/MS By MS/MS 3 0 2 1 1 16610000 0 3933000 12677000 5108 1214 5319 21464;21465 18079;18080 18079 2 0 1676600 2458800 GVEEEEEDGEMRE LGEVLIRCNNVLYIRGVEEEEEDGEMRE__ IRGVEEEEEDGEMRE_______________ R G V R E - 0 1 0 1 0 0 7 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 13 1 1536.5886 P62306 P62306 74 86 SNRPF Small nuclear ribonucleoprotein F yes yes 2 3.7394E-12 184.71 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 10761000 0 1192300 9569200 5109 1019 5320 21466;21467;21468 18081;18082;18083;18084 18084 4 0 6031900 17391000 GVEICIATPGR YGGAPKGPQIRDLERGVEICIATPGRLIDF DLERGVEICIATPGRLIDFLECGKTNLRRT R G V G R L 1 1 0 0 1 0 1 2 0 2 0 0 0 0 1 0 1 0 0 1 0 0 11 0 1171.6019 Q92841;P17844 P17844 217 227 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.00032742 123.86 By MS/MS By MS/MS 4.5 1.12 1 1 1 1 1 3 37085000 0 7490200 29595000 5110 588;1725 5321 21469;21470;21471;21472 18085;18086 18086 2 0 2485700 5181600 GVEKPPHLAALILAR RPPKLQRNSRGGQGRGVEKPPHLAALILAR GVEKPPHLAALILARGGSKGIPLKNIKHLA R G V A R G 3 1 0 0 0 0 1 1 1 1 3 1 0 0 2 0 0 0 0 1 0 0 15 1 1583.9511 Q8NFW8 Q8NFW8 38 52 CMAS N-acylneuraminate cytidylyltransferase yes yes 2;3 0.026895 79.201 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 33128000 0 14143000 18985000 5111 1644 5322 21473;21474;21475 18087;18088;18089 18087 3 0 3645600 2821200 GVESVFDIMEMEDEER LPHFTSEHIKRCTDKGVESVFDIMEMEDEE VESVFDIMEMEDEERNALLQLTDSQIADVA K G V E R N 0 1 0 2 0 0 5 1 0 1 0 0 2 1 0 1 0 0 0 2 0 0 16 0 1913.8023 O75643 O75643 1978 1993 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 4.5232E-05 136.27 By MS/MS 1.5 0.5 1 1 2 14542000 0 0 14542000 5112 277 5323 21476;21477 18090 18090 1 0 0 3170700 GVETIANDVVSLATK PAGLITPIVFNAHIKGVETIANDVVSLATK GVETIANDVVSLATKAREGKLQPHEFQGGT K G V T K A 2 0 1 1 0 0 1 1 0 1 1 1 0 0 0 1 2 0 0 3 0 0 15 0 1515.8144 P10515 P10515 533 547 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 2 0.052393 59.155 By matching By MS/MS 3 0 2 1 1 2614600 1461200 1153400 0 5113 510 5324 21478;21479 18091 18091 1 1685900 491700 0 GVFEAIVDQSPFVPEETMEEQK AAKTKDHTLVQTIARGVFEAIVDQSPFVPE DQSPFVPEETMEEQKTKVGDGDLSAEEIPE R G V Q K T 1 0 0 1 0 2 5 1 0 1 0 1 1 2 2 1 1 0 0 3 0 0 22 0 2508.173 Q14684 Q14684 215 236 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.00014528 70.121 By MS/MS 2 0.816 1 1 1 3 7886700 0 0 7886700 5114 1313 5325 21480;21481;21482 18092 18092 1 0 0 1687400 GVFGGVSGSGSGGYK VSNVTSTSGSSGSSRGVFGGVSGSGSGGYK GVFGGVSGSGSGGYKGGSSSSSSSGYGVSG R G V Y K G 0 0 0 0 0 0 0 7 0 0 0 1 0 1 0 3 0 0 1 2 0 0 15 0 1314.6204 CON__Q01546;Q01546 Q01546 524 538 KRT76 Keratin, type II cytoskeletal 2 oral no no 2 0.001729 92.943 By MS/MS 1 0 1 1 9959600 9959600 0 0 + 5115 71;1135 5326 21483 18093 18093 1 9959600 0 0 GVFLPYQCNLSHTK HNILTRCSLHLGNRRGVFLPYQCNLSHTKI RGVFLPYQCNLSHTKILLEPESMSKVNLNG R G V T K I 0 0 1 0 1 1 0 1 1 0 2 1 0 1 1 1 1 0 1 1 0 0 14 0 1662.8188 P03243;P03244 P03243 402 415 yes no 2;3 4.1219E-13 175.15 By matching By MS/MS By MS/MS 4.48 2.5 5 2 4 4 2 3 2 1 3 7 13 565760000 5567900 80461000 479730000 5116 406 5327 21484;21485;21486;21487;21488;21489;21490;21491;21492;21493;21494;21495;21496;21497;21498;21499;21500;21501;21502;21503;21504;21505;21506 18094;18095;18096;18097;18098;18099;18100;18101;18102;18103;18104;18105;18106;18107;18108 18099 14 7829800 25615000 93207000 GVFNVQMEPK SQAMAVIKEKIEEKRGVFNVQMEPKVVTDT IEEKRGVFNVQMEPKVVTDTDETELARQME R G V P K V 0 0 1 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 2 0 0 10 0 1147.5696 P05198 P05198 267 276 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.00073005 114.28 By MS/MS By MS/MS 5.4 0.8 1 1 3 4 1 180570000 0 84489000 96076000 5117 428 5328;5329 21507;21508;21509;21510;21511 18109;18110;18111 18110 151 3 0 28888000 14374000 GVFSFSFR QSETHVLSIKQGELKGVFSFSFRVESDIAP IKQGELKGVFSFSFRVESDIAPIAQLLVYT K G V F R V 0 1 0 0 0 0 0 1 0 0 0 0 0 3 0 2 0 0 0 1 0 0 8 0 945.47085 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 525 532 yes yes 2 0.0027738 107.32 By matching By MS/MS 3.33 0.471 2 1 1 2 2371500 1143400 1228100 0 + 5118 30 5330 21512;21513;21514 18112 18112 1 1319200 478070 0 GVFVQSVLPYFVATK VDFFSQCLHEEYRSKGVFVQSVLPYFVATK GVFVQSVLPYFVATKLAKIRKPTLDKPSPE K G V T K L 1 0 0 0 0 1 0 1 0 0 1 1 0 2 1 1 1 0 1 4 0 0 15 0 1653.913 Q53GQ0 Q53GQ0 224 238 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 2 0.00048933 110.66 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 26400000 0 3493900 22906000 5119 1424 5331 21515;21516;21517 18113;18114;18115 18114 3 0 1209500 3586200 GVGAAATAVTQALNELLQHVK VSASQAATEDGQLLRGVGAAATAVTQALNE TAVTQALNELLQHVKAHATGAGPAGRYDQA R G V V K A 5 0 1 0 0 2 1 2 1 0 3 1 0 0 0 0 2 0 0 3 0 0 21 0 2090.1484 Q9Y490 Q9Y490 766 786 TLN1 Talin-1 yes yes 3 2.4871E-14 123.41 By MS/MS 2 0.816 1 1 1 3 4343300 0 0 4343300 5120 2284 5332 21518;21519;21520 18116 18116 1 0 0 939360 GVGAEPLLPWNR WRGPPPLFQQQRFDRGVGAEPLLPWNRMLQ FDRGVGAEPLLPWNRMLQTQNAAFQPNQYQ R G V N R M 1 1 1 0 0 0 1 2 0 0 2 0 0 0 2 0 0 1 0 1 0 0 12 0 1307.6986 Q9H0D6 Q9H0D6 884 895 XRN2 5-3 exoribonuclease 2 yes yes 2 2.6373E-05 151.44 By MS/MS By MS/MS 2 0 2 1 1 18604000 0 8827500 9776600 5121 1960 5333 21521;21522 18117;18118 18118 2 0 3975200 2209300 GVGVFGDMAQDTGIPADIWR TEYLNYEDGKFSKSRGVGVFGDMAQDTGIP GDMAQDTGIPADIWRFYLLYIRPEGQDSAF R G V W R F 2 1 0 3 0 1 0 4 0 2 0 0 1 1 1 0 1 1 0 2 0 0 20 0 2104.0048 P56192 P56192 599 618 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 2.813E-13 145.71 By MS/MS 2 0 1 1 1242500 0 0 1242500 5122 949 5334 21523 18119 18119 1 0 0 280790 GVIDMGNSLIER QAFEAELHANADRIRGVIDMGNSLIERGAC RIRGVIDMGNSLIERGACAGSEDAVKARLA R G V E R G 0 1 1 1 0 0 1 2 0 2 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1302.6602 Q13813 Q13813 1608 1619 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 7.3577E-08 164.97 By MS/MS By matching 1.8 0.748 2 2 1 4 1 60080000 0 58852000 1227500 5123 1268 5335;5336 21524;21525;21526;21527;21528 18120;18121 18121 582 2 0 28300000 238080 GVIFGQTSSTFTFADLAK TGFQAQDISGQKNGRGVIFGQTSSTFTFAD FGQTSSTFTFADLAKSTSGEGFQFGKKDPN R G V A K S 2 0 0 1 0 1 0 2 0 1 1 1 0 3 0 2 3 0 0 1 0 0 18 0 1888.9571 P49792 P49792 1935 1952 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.0011877 87.18 By MS/MS 1 0 1 1 2463400 0 0 2463400 5124 871 5337 21529 18122 18122 1 0 0 530770 GVIFYLR PAVPQAPVQGEDYGKGVIFYLRDKVVVGIV VQGEDYGKGVIFYLRDKVVVGIVLWNIFNR K G V L R D 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 1 1 0 0 7 0 866.50142 O95831 O95831 563 569 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.027302 94.95 By matching By MS/MS 3.5 0.5 1 1 1 1 1557700 585060 972690 0 5125 345 5338 21530;21531 18123 18123 1 675030 322800 0 GVIGDPLLTLFVAR RAVWRAMLARYVPNKGVIGDPLLTLFVARL KGVIGDPLLTLFVARLNLQTKEDKLKEVFS K G V A R L 1 1 0 1 0 0 0 2 0 1 3 0 0 1 1 0 1 0 0 2 0 0 14 0 1469.8606 Q16560 Q16560 44 57 SNRNP35 U11/U12 small nuclear ribonucleoprotein 35 kDa protein yes yes 2 0.0038067 92.611 By matching By MS/MS 6 0 2 1 1 2405500 0 709160 1696300 5126 1389 5339 21532;21533 18124 18124 1 0 245490 253790 GVIQVYDLGQDGQGMSR AIDNSRNILYTRSEKGVIQVYDLGQDGQGM IQVYDLGQDGQGMSRVASVSQNAIVSAAGN K G V S R V 0 1 0 2 0 3 0 4 0 1 1 0 1 0 0 1 0 0 1 2 0 0 17 0 1821.8679 O75694 O75694 298 314 NUP155 Nuclear pore complex protein Nup155 yes yes 2 7.1057E-38 216.83 By MS/MS 1.5 0.5 1 1 2 14123000 0 0 14123000 5127 281 5340 21534;21535 18125 18125 1 0 0 3140500 GVISTPVIR LQVVSVGGPARGRPRGVISTPVIRTFGRGG ARGRPRGVISTPVIRTFGRGGRYYGRGYKN R G V I R T 0 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 1 0 0 2 0 0 9 0 940.57057 Q9NZB2 Q9NZB2 987 995 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 0.00063673 133.9 By MS/MS 2 0 1 1 6548700 0 6548700 0 5128 2101 5341 21536 18126 18126 1 0 2949000 0 GVITRPDLPSKK CHEKYDKQIKFTLFKGVITRPDLPSKKQGP LFKGVITRPDLPSKKQGPWATYAAIEWDGK K G V K K Q 0 1 0 1 0 0 0 1 0 1 1 2 0 0 2 1 1 0 0 1 0 0 12 2 1309.7718 A6NHR9 A6NHR9 581 592 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.0171 71.806 By MS/MS 1 0 1 1 13145000 0 0 13145000 5129 15 5342 21537 18127 18127 1 0 0 2832300 GVLANALAGR TPEITVSIIKELNRRGVLANALAGRDEKEI ELNRRGVLANALAGRDEKEISHVLNFLIRN R G V G R D 3 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 940.54541 Q8TED0 Q8TED0 404 413 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.00052412 130.77 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 41492000 0 19910000 21582000 5130 1665 5343 21538;21539;21540 18128;18129 18129 2 0 6707700 3525000 GVLHTFSPSPK QASSQLSRGSATTPRGVLHTFSPSPKLQNS TTPRGVLHTFSPSPKLQNSASATALVSRTG R G V P K L 0 0 0 0 0 0 0 1 1 0 1 1 0 1 2 2 1 0 0 1 0 0 11 0 1168.6241 Q86YP4 Q86YP4 540 550 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.011349 89.047 By MS/MS 3 0 1 1 4295600 0 4295600 0 5131 1563 5344 21541 18130 18130 1 0 1831200 0 GVLKVFLENVIR GGVKRISGLIYEETRGVLKVFLENVIRDAV ETRGVLKVFLENVIRDAVTYTEHAKRKTVT R G V I R D 0 1 1 0 0 0 1 1 0 1 2 1 0 1 0 0 0 0 0 3 0 0 12 1 1385.8395 P62805 P62805 57 68 HIST1H4A Histone H4 yes yes 2;3 6.5133E-10 160.18 By MS/MS 8.2 0.748 1 2 2 5 44251000 0 0 44251000 5132 1033 5345 21542;21543;21544;21545;21546 18131;18132;18133;18134 18132 4 0 0 11605000 GVLLEIEDLQVNQFK KKISLKYTAARLHEKGVLLEIEDLQVNQFK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF K G V F K N 0 0 1 1 0 2 2 1 0 1 3 1 0 1 0 0 0 0 0 2 0 0 15 0 1743.9407 P46940 P46940 1572 1586 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 1.1223E-17 192.1 By MS/MS By MS/MS 2 0 2 1 1 21578000 0 13182000 8396500 5133 835 5346 21547;21548 18135;18136 18136 2 0 5935900 1897500 GVLLMLFGGVPK TSLFPTIHGNDEVKRGVLLMLFGGVPKTTG VKRGVLLMLFGGVPKTTGEGTSLRGDINVC R G V P K T 0 0 0 0 0 0 0 3 0 0 3 1 1 1 1 0 0 0 0 2 0 0 12 0 1229.7206 Q14566 Q14566 367 378 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.066653 68.735 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 3145400 0 765480 2379900 5134 1305 5347 21549;21550 18137;18138 18137 2 0 344710 461590 GVLMAGLYPNLIQVR SAQCNEYSEEEELVKGVLMAGLYPNLIQVR GVLMAGLYPNLIQVRQGKVTRQGKFKPNSV K G V V R Q 1 1 1 0 0 1 0 2 0 1 3 0 1 0 1 0 0 0 1 2 0 0 15 0 1642.9229 Q7L2E3 Q7L2E3 1017 1031 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 8.3676E-05 155.42 By matching By MS/MS By MS/MS 2 0.632 1 3 1 1 2 2 53815000 545470 19264000 34006000 5135 1522 5348 21551;21552;21553;21554;21555 18139;18140;18141 18141 3 657220 8629100 7627300 GVLNVHPAASASKPSADQIR GTHEKQEMKKKKVEKGVLNVHPAASASKPS HPAASASKPSADQIRQSVRHSLKDILMKRL K G V I R Q 4 1 1 1 0 1 0 1 1 1 1 1 0 0 2 3 0 0 0 2 0 0 20 1 2017.0705 Q92576 Q92576 909 928 PHF3 PHD finger protein 3 yes yes 4 0.0019825 57.009 By MS/MS 1 0 1 1 13727000 0 0 13727000 5136 1709 5349 21556 18142 18142 1 0 0 2957800 GVLRPGTALVLLEAQAATGFVIDPVR PGRQEKMSIYQAMWKGVLRPGTALVLLEAQ LEAQAATGFVIDPVRNLRLSVEEAVAAGVV K G V V R N 4 2 0 1 0 1 1 3 0 1 4 0 0 1 2 0 2 0 0 4 0 0 26 1 2662.517 P58107 P58107 2252 2277 EPPK1 Epiplakin yes no 3;4 4.4025E-20 114.91 By MS/MS 2.17 1.07 2 2 1 1 6 31880000 0 0 31880000 5137 958 5350 21557;21558;21559;21560;21561;21562 18143;18144;18145 18143 3 0 0 6742500 GVMLAVDAVIAELKK FEKISKGANPVEIRRGVMLAVDAVIAELKK GVMLAVDAVIAELKKQSKPVTTPEEIAQVA R G V K K Q 3 0 0 1 0 0 1 1 0 1 2 2 1 0 0 0 0 0 0 3 0 0 15 1 1555.9008 P10809 P10809 143 157 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 3 0.036781 43.297 By MS/MS By MS/MS 3.25 0.829 1 1 2 1 3 12553000 0 674460 11879000 5138 515 5351 21563;21564;21565;21566 18146;18147 18147 2 0 223830 2131700 GVNLDPLGK LKTRRRDLAQALINRGVNLDPLGKWSKTGL QALINRGVNLDPLGKWSKTGLVVYDSSVPI R G V G K W 0 0 1 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 1 0 0 9 0 911.50763 P46087 P46087 332 340 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0045806 97.798 By MS/MS By matching 2.5 1.12 1 1 1 1 3 1 21048000 0 19227000 1820400 5139 824 5352 21567;21568;21569;21570 18148;18149 18148 2 0 8575200 297330 GVNLPGAAVDLPAVSEK LVTEVENGGSLGSKKGVNLPGAAVDLPAVS NLPGAAVDLPAVSEKDIQDLKFGVEQDVDM K G V E K D 3 0 1 1 0 0 1 2 0 0 2 1 0 0 2 1 0 0 0 3 0 0 17 0 1635.8832 P14618 P14618 208 224 PKM Pyruvate kinase PKM yes yes 2 6.1243E-05 100.55 By MS/MS By MS/MS 4 0 2 1 1 20420000 0 9214700 11205000 5140 559 5353 21571;21572 18150;18151 18150 2 0 3058000 1830100 GVNSYPSLFIFR GAVNCGDDRMLCRMKGVNSYPSLFIFRSGM RMKGVNSYPSLFIFRSGMAPVKYHGDRSKE K G V F R S 0 1 1 0 0 0 0 1 0 1 1 0 0 2 1 2 0 0 1 1 0 0 12 0 1398.7296 Q8IXB1 Q8IXB1 197 208 DNAJC10 DnaJ homolog subfamily C member 10 yes yes 2 0.0012093 115.82 By matching By MS/MS By MS/MS 2.75 0.433 1 3 1 2 1 16038000 1215200 5968300 8854700 5141 1580 5354 21573;21574;21575;21576 18152;18153;18154 18154 3 1402100 2582000 1717400 GVNWAAFHPTMPLIVSGADDR TTDAVVKHVLEGHDRGVNWAAFHPTMPLIV FHPTMPLIVSGADDRQVKIWRMNESKAWEV R G V D R Q 3 1 1 2 0 0 0 2 1 1 1 0 1 1 2 1 1 1 0 2 0 0 21 0 2253.1001 P53621 P53621 207 227 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 5.6263E-08 100.53 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 11773000 0 5538300 6234500 5142 922 5355 21577;21578;21579 18155;18156 18156 2 0 2494000 1389100 GVPAGNSDTEGGQPGR PKSFKRKISVVSATKGVPAGNSDTEGGQPG VPAGNSDTEGGQPGRKRRWGASTATTQKKP K G V G R K 1 1 1 1 0 1 1 5 0 0 0 0 0 0 2 1 1 0 0 1 0 0 16 0 1497.6808 Q9UKV3 Q9UKV3 832 847 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 3.3855E-05 132.32 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 12333000 0 6625900 5707400 5143 2184 5356 21580;21581;21582;21583 18157;18158;18159;18160;18161 18161 5 0 2902300 1107000 GVPAGNSDTEGGQPGRK PKSFKRKISVVSATKGVPAGNSDTEGGQPG PAGNSDTEGGQPGRKRRWGASTATTQKKPS K G V R K R 1 1 1 1 0 1 1 5 0 0 0 1 0 0 2 1 1 0 0 1 0 0 17 1 1625.7758 Q9UKV3 Q9UKV3 832 848 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 0.073165 24.793 By MS/MS 3 0 1 1 649410 0 0 649410 5144 2184 5357 21584 18162 18162 1 0 0 125960 GVPLQFDINSVGK FLTKREQSDVKKVPKGVPLQFDINSVGKQT PKGVPLQFDINSVGKQTGMTLNERFGILKE K G V G K Q 0 0 1 1 0 1 0 2 0 1 1 1 0 1 1 1 0 0 0 2 0 0 13 0 1372.7351 Q96QD9 Q96QD9 273 285 FYTTD1 UAP56-interacting factor yes yes 2 0.018611 79.201 By MS/MS By matching 6 0 2 1 1 15552000 0 7091800 8459900 5145 1824 5358 21585;21586 18163 18163 1 0 2454900 1265700 GVPQQIEVAR PPPNSDPNLRRFTIRGVPQQIEVARQLIDE RFTIRGVPQQIEVARQLIDEKVGGTNLGAP R G V A R Q 1 1 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 10 0 1095.6037 Q96I24 Q96I24 409 418 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.00073005 114.28 By matching By MS/MS By MS/MS 3.5 0.5 3 3 1 2 3 110710000 5119900 68573000 37020000 5146 1797 5359 21587;21588;21589;21590;21591;21592 18164;18165;18166;18167;18168 18167 5 5907200 24233000 6819700 GVQDIVVGEGTHFLIPWVQK NVDAGHRAVIFDRFRGVQDIVVGEGTHFLI VVGEGTHFLIPWVQKPIIFDCRSRPRNVPV R G V Q K P 0 0 0 1 0 2 1 3 1 2 1 1 0 1 1 0 1 1 0 4 0 0 20 0 2221.1895 P35232 P35232 44 63 PHB Prohibitin yes yes 3 0.011857 43.946 By MS/MS 6 0 1 1 4500600 0 0 4500600 5147 740 5360 21593 18169 18169 1 0 0 673330 GVQGIIVVNTEGIPIK MAEVEETLKRLQSQKGVQGIIVVNTEGIPI VQGIIVVNTEGIPIKSTMDNPTTTQYASLM K G V I K S 0 0 1 0 0 1 1 3 0 4 0 1 0 0 1 0 1 0 0 3 0 0 16 0 1635.956 Q9NP97 Q9NP97 16 31 DYNLRB1 Dynein light chain roadblock-type 1 yes yes 2 0.0071839 76.655 By MS/MS 10 0 1 1 2046600 0 2046600 0 5148 2022 5361 21594 18170 18170 1 0 10354000 0 GVQVETISPGDGR ______________________________ ______________________________ M G V G R T 0 1 0 1 0 1 1 3 0 1 0 0 0 0 1 1 1 0 0 2 0 0 13 0 1313.6575 P62942 P62942 2 14 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 2 0.0060635 97.456 By MS/MS By MS/MS 9.5 0.5 1 1 1 1 14331000 0 3083200 11248000 5149 1054 5362 21595;21596 18171;18172;18173 18172 2 0 15598000 3593000 GVQYLNEIK GPDGTGPNILTDITKGVQYLNEIKDSVVAG LTDITKGVQYLNEIKDSVVAGFQWATKEGA K G V I K D 0 0 1 0 0 1 1 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1062.571 P13639 P13639 668 676 EEF2 Elongation factor 2 yes yes 2 0.048161 72.038 By matching By matching By MS/MS 2.33 0.471 2 1 1 1 1 23161000 5612400 4444700 13104000 5150 547 5363 21597;21598;21599 18174 18174 1 6762300 2001500 2541500 GVSFYEVPPHLFAVADTVYR RDLQIYSRQHMERYRGVSFYEVPPHLFAVA EVPPHLFAVADTVYRALRTERRDQAVMISG R G V Y R A 2 1 0 1 0 0 1 1 1 0 1 0 0 2 2 1 1 0 2 4 0 0 20 0 2266.1423 O00159 O00159 106 125 MYO1C Unconventional myosin-Ic yes yes 3 0.0062484 48.229 By MS/MS By MS/MS 2 0 2 1 1 20903000 0 4418900 16484000 5151 106 5364 21600;21601 18175;18176;18177 18175 3 0 1989900 3725200 GVSTFMAEMLETASILR DCILARVGAGDSQLKGVSTFMAEMLETASI STFMAEMLETASILRSATKDSLIIIDELGR K G V L R S 2 1 0 0 0 0 2 1 0 1 2 0 2 1 0 2 2 0 0 1 0 0 17 0 1854.922 P43246 P43246 721 737 MSH2 DNA mismatch repair protein Msh2 yes yes 2;3 6.1838E-09 164.11 By MS/MS 2 0 2 2 24542000 0 0 24542000 5152 813 5365 21602;21603 18178;18179 18179 2 0 0 5546000 GVSVWPVGLVGGLR NTYSRELFEEMRWTRGVSVWPVGLVGGLRF RGVSVWPVGLVGGLRFEGPQVQDGRVVGFH R G V L R F 0 1 0 0 0 0 0 4 0 0 2 0 0 0 1 1 0 1 0 4 0 0 14 0 1394.8034 O94766 O94766 212 225 B3GAT3 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 yes yes 2 0.0040069 91.584 By MS/MS 5 0 1 1 2621200 0 0 2621200 5153 297 5366 21604 18180 18180 1 0 0 365610 GVTFLFPIQAK NFPISEETIKLLKGRGVTFLFPIQAKTFHH LKGRGVTFLFPIQAKTFHHVYSGKDLIAQA R G V A K T 1 0 0 0 0 1 0 1 0 1 1 1 0 2 1 0 1 0 0 1 0 0 11 0 1219.6965 Q9NR30 Q9NR30 205 215 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00015799 138.78 By MS/MS By MS/MS 3.33 2.36 2 2 2 1 1 1 6 3 204600000 0 105220000 99376000 5154 2038 5367 21605;21606;21607;21608;21609;21610;21611;21612;21613 18181;18182;18183;18184;18185;18186;18187;18188 18182 8 0 47438000 20634000 GVTFLLR TPGLNTTLLCLSGLRGVTFLLRLEGEDQFL LLCLSGLRGVTFLLRLEGEDQFLEVAEAPE R G V L R L 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 1 0 0 7 0 804.48577 CON__Q2KJF1;P04217 CON__Q2KJF1 148 154 A1BG Alpha-1B-glycoprotein yes no 2 0.0024065 131.65 By MS/MS By MS/MS 7.67 2.62 1 1 1 1 2 17964000 10451000 7513400 0 + 5155 78 5368 21614;21615;21616 18189;18190 18190 2 5866200 18141000 0 GVTIASGGVLPNIHPELLAK LLAVANDEELNQLLKGVTIASGGVLPNIHP SGGVLPNIHPELLAKKRGSKGKLEAIITPP K G V A K K 2 0 1 0 0 0 1 3 1 2 3 1 0 0 2 1 1 0 0 2 0 0 20 0 1985.131 O75367 O75367 97 116 H2AFY Core histone macro-H2A.1 yes yes 2;3;4 1.864E-45 206.67 By matching By MS/MS By MS/MS 5.31 2.48 3 3 3 3 7 4 4 4 3 1 2 14 19 2391900000 45171000 810700000 1536100000 5156 253 5369 21617;21618;21619;21620;21621;21622;21623;21624;21625;21626;21627;21628;21629;21630;21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643;21644;21645;21646;21647;21648;21649;21650;21651 18191;18192;18193;18194;18195;18196;18197;18198;18199;18200;18201;18202;18203;18204;18205;18206;18207;18208;18209;18210;18211;18212;18213;18214;18215;18216;18217;18218;18219;18220;18221;18222;18223;18224;18225;18226;18227;18228;18229;18230;18231;18232 18222 42 36188000 257100000 235020000 GVTIASGGVLPR LLAVANDEELNQLLKGVTIASGGVLPRIHP LLKGVTIASGGVLPRIHPELLAKKRGTKGK K G V P R I 1 1 0 0 0 0 0 3 0 1 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1125.6506 Q9P0M6 Q9P0M6 97 108 H2AFY2 Core histone macro-H2A.2 yes yes 2 1.3555E-05 155.84 By MS/MS By MS/MS By MS/MS 6.7 1.9 1 3 1 1 2 1 1 1 6 3 267110000 5562600 98973000 162570000 5157 2117 5370 21652;21653;21654;21655;21656;21657;21658;21659;21660;21661 18233;18234;18235;18236;18237;18238;18239;18240;18241;18242;18243;18244 18235 12 4456400 37301000 23017000 GVTIKPTVDDD VEKHWRLIGWGQIRRGVTIKPTVDDD____ QIRRGVTIKPTVDDD_______________ R G V D D - 0 0 0 3 0 0 0 1 0 1 0 1 0 0 1 0 2 0 0 2 0 0 11 1 1158.5768 P41091;Q2VIR3 P41091 462 472 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.00049528 142.56 By MS/MS 3.2 1.72 1 1 1 1 1 5 106360000 0 0 106360000 5158 790 5371 21662;21663;21664;21665;21666 18245 18245 1 0 0 18082000 GVTIPYRPK ICVVMLETLSQSPPKGVTIPYRPKPSSSPV SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY K G V P K P 0 1 0 0 0 0 0 1 0 1 0 1 0 0 2 0 1 0 1 1 0 0 9 1 1029.5971 Q15366 Q15366 177 185 PCBP2 Poly(rC)-binding protein 2 yes yes 2 0.023119 101.64 By MS/MS 5 0 1 1 11039000 0 0 11039000 5159 1357 5372 21667 18246 18246 1 0 0 1539700 GVTIPYRPKPSSSPVIFAGGQDR ICVVMLETLSQSPPKGVTIPYRPKPSSSPV KPSSSPVIFAGGQDRYSTGSDSASFPHTTP K G V D R Y 1 2 0 1 0 1 0 3 0 2 0 1 0 1 4 3 1 0 1 2 0 0 23 2 2428.2863 Q15366 Q15366 177 199 PCBP2 Poly(rC)-binding protein 2 yes yes 4 0.039438 31.176 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 36218000 0 18226000 17991000 5160 1357 5373 21668;21669;21670;21671 18247;18248 18247 2 0 6341500 2509500 GVTIVKPIVYGNVAR KRMAEFGPDSGGRVKGVTIVKPIVYGNVAR GVTIVKPIVYGNVARYFGKKREEDGHTHQW K G V A R Y 1 1 1 0 0 0 0 2 0 2 0 1 0 0 1 0 1 0 1 4 0 0 15 1 1584.9352 O95619 O95619 18 32 YEATS4 YEATS domain-containing protein 4 yes yes 2;3 4.5079E-05 163.38 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 48508000 0 6074700 42433000 5161 332 5374 21672;21673;21674;21675 18249;18250 18250 2 0 3488200 7478500 GVTNDQVDPSVDVLK CLAPFMKHPLKIVLRGVTNDQVDPSVDVLK GVTNDQVDPSVDVLKATALPLLKQFGIDGE R G V L K A 0 0 1 3 0 1 0 1 0 0 1 1 0 0 1 1 1 0 0 4 0 0 15 0 1584.7995 Q9Y2P8 Q9Y2P8 119 133 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.00028429 128.85 By MS/MS 6 0 1 1 8941300 0 8941300 0 5162 2243 5375 21676 18251 18251 1 0 3095200 0 GVTQFGNK MSVVPPNRSQTGWPRGVTQFGNKYIQQTKP SQTGWPRGVTQFGNKYIQQTKPLTLERTIN R G V N K Y 0 0 1 0 0 1 0 2 0 0 0 1 0 1 0 0 1 0 0 1 0 0 8 0 849.43447 O43809 O43809 16 23 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 0.057342 71.141 By MS/MS 7 0 1 1 4338000 0 4338000 0 5163 213 5376 21677 18252 18252 1 0 2490900 0 GVTQYYAYVTER QKPYEINLMEELTLKGVTQYYAYVTERQKV TLKGVTQYYAYVTERQKVHCLNTLFSRLQI K G V E R Q 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 2 0 3 2 0 0 12 0 1448.6936 P26196 P26196 308 319 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 1.9485E-12 182.64 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 26365000 0 11553000 14813000 5164 665 5377 21678;21679;21680 18253;18254 18253 2 0 3940000 2419400 GVTYLFPIQVK NFPISEETIKLLKGRGVTYLFPIQVKTFGP LKGRGVTYLFPIQVKTFGPVYEGKDLIAQA R G V V K T 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 0 1 0 1 2 0 0 11 0 1263.7227 Q9BQ39 Q9BQ39 156 166 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.0027649 107.01 By MS/MS 9 0 1 1 3353300 0 3353300 0 5165 1876 5378 21681 18255 18255 1 0 2685100 0 GVVDSDDLPLNVSR DDFHDMMPKYLNFVKGVVDSDDLPLNVSRE KGVVDSDDLPLNVSRETLQQHKLLKVIRKK K G V S R E 0 1 1 3 0 0 0 1 0 0 2 0 0 0 1 2 0 0 0 3 0 0 14 0 1484.7471 P14625 P14625 435 448 HSP90B1 Endoplasmin yes yes 2 2.7907E-11 177.44 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 24255000 0 6483200 17771000 5166 560 5379 21682;21683;21684 18256;18257;18258 18257 3 0 2919500 3779300 GVVDSEDLPLNISR DSCDELIPEYLNFIRGVVDSEDLPLNISRE RGVVDSEDLPLNISREMLQQSKILKVIRKN R G V S R E 0 1 1 2 0 0 1 1 0 1 2 0 0 0 1 2 0 0 0 2 0 0 14 0 1512.7784 P07900;P08238 P08238 379 392 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 2 9.1273E-25 199.68 By MS/MS By MS/MS By MS/MS 4.65 2.74 2 2 3 3 1 2 1 1 2 2 6 9 243670000 48309000 51580000 143790000 5167 466;469 5380 21685;21686;21687;21688;21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701 18259;18260;18261;18262;18263;18264;18265;18266;18267;18268;18269;18270;18271 18265 13 54216000 62596000 46159000 GVVEVTHDLQK MGKMQKKAVAISLPKGVVEVTHDLQKHLAG SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK K G V Q K H 0 0 0 1 0 1 1 1 1 0 1 1 0 0 0 0 1 0 0 3 0 0 11 0 1223.651 P50454 P50454 309 319 SERPINH1 Serpin H1 yes yes 2;3 0.00012498 140.11 By MS/MS By MS/MS 5.75 1.09 1 3 1 3 3 5 102360000 0 13721000 88638000 5168 879 5381 21702;21703;21704;21705;21706;21707;21708;21709 18272;18273;18274;18275 18273 3 0 4045000 12865000 GVVLFPWQAR YETGQLFLHSIFGYRGVVLFPWQARLYDRD IFGYRGVVLFPWQARLYDRDVASAAPEKAE R G V A R L 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 2 0 0 10 0 1171.6502 Q9Y2S7 Q9Y2S7 92 101 POLDIP2 Polymerase delta-interacting protein 2 yes yes 2 0.0077853 91.9 By matching By MS/MS 4.25 2.05 1 1 2 3 1 35170000 26850000 0 8319900 5169 2249 5382 21710;21711;21712;21713 18276 18276 1 28682000 0 1244700 GVVMHTFGGYANSK ISTNGSFIRLIDAFKGVVMHTFGGYANSKA KGVVMHTFGGYANSKAVTLEASFTPDSQFI K G V S K A 1 0 1 0 0 0 0 3 1 0 0 1 1 1 0 1 1 0 1 2 0 0 14 0 1466.6976 Q6UXN9 Q6UXN9 226 239 WDR82 WD repeat-containing protein 82 yes yes 2;3 6.6974E-89 255.19 By matching By MS/MS 5.75 0.433 1 3 2 2 29723000 0 5505900 24218000 5170 1506 5383 21714;21715;21716;21717 18277;18278 18278 2 0 1577600 3623200 GVVQELQQAISK VVRIASLEVENQSLRGVVQELQQAISKLEA SLRGVVQELQQAISKLEARLNVLEKSSPGH R G V S K L 1 0 0 0 0 3 1 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1298.7194 P29692 P29692 96 107 EEF1D Elongation factor 1-delta yes yes 2 3.0259E-05 150.61 By MS/MS By MS/MS By MS/MS 6 0 3 1 1 1 127760000 6656600 19746000 101360000 5171 702 5384 21718;21719;21720 18279;18280;18281;18282 18279 4 8863300 6835300 15165000 GVVQLFNAVQK QDKETERNLQRIATRGVVQLFNAVQKHQKN IATRGVVQLFNAVQKHQKNVDEKVKEAGSS R G V Q K H 1 0 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 0 3 0 0 11 0 1201.6819 Q9Y3B9 Q9Y3B9 169 179 RRP15 RRP15-like protein yes yes 2 0.00032787 127.02 By matching By MS/MS By MS/MS 5.71 0.7 3 3 1 2 3 2 60463000 2448700 21696000 36318000 5172 2267 5385 21721;21722;21723;21724;21725;21726;21727 18283;18284;18285;18286;18287 18284 5 2535300 7060600 5264500 GVVTAEMFR LLDLINFFIQCSGCKGVVTAEMFRHMQNSE QCSGCKGVVTAEMFRHMQNSEIIRKMTEEF K G V F R H 1 1 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 2 0 0 9 0 1008.5063 Q8N3U4 Q8N3U4 129 137 STAG2 Cohesin subunit SA-2 yes yes 2 1.9215E-05 151.27 By matching By MS/MS 1.67 0.471 1 2 1 2 49989000 2167800 0 47821000 5173 1603 5386 21728;21729;21730 18288;18289 18289 2 2611900 0 10666000 GVWSTLPVNEK IKSNNHENVSLAKAKGVWSTLPVNEKKLNL AKAKGVWSTLPVNEKKLNLAFRSARSVILI K G V E K K 0 0 1 0 0 0 1 1 0 0 1 1 0 0 1 1 1 1 0 2 0 0 11 0 1228.6452 Q96MU7 Q96MU7 375 385 YTHDC1 YTH domain-containing protein 1 yes yes 2 1.6207E-05 109.29 By MS/MS 2 0 1 1 0 0 0 0 5174 1813 5387 21731 18290 18290 1 0 0 0 GVYPDLLATSGDYLR HPYPTTKLMWIPDTKGVYPDLLATSGDYLR GVYPDLLATSGDYLRVWRVGETETRLECLL K G V L R V 1 1 0 2 0 0 0 2 0 0 3 0 0 0 1 1 1 0 2 1 0 0 15 0 1638.8253 P61962 P61962 82 96 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 2 0.00040607 115.15 By MS/MS By matching 6 0.816 1 1 1 2 1 8896200 0 5868100 3028100 5175 1000 5388 21732;21733;21734 18291 18291 1 0 1928700 537320 GWAQLTDK AGRLMRAIFEIVLNRGWAQLTDKTLNLCKM FEIVLNRGWAQLTDKTLNLCKMIDKRMWQS R G W D K T 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 8 0 917.46068 O75643 O75643 1103 1110 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0092479 94.662 By MS/MS 1 0 1 1 37695000 0 0 37695000 5176 277 5389 21735 18292 18292 1 0 0 8122000 GWDEALLTMSK AKPLSFKVGVGKVIRGWDEALLTMSKGEKA KVIRGWDEALLTMSKGEKARLEIEPEWAYG R G W S K G 1 0 0 1 0 0 1 1 0 0 2 1 1 0 0 1 1 1 0 0 0 0 11 0 1249.6013 Q00688 Q00688 174 184 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 0.0017267 109.66 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 65245000 0 11305000 53940000 5177 1126 5390 21736;21737;21738;21739 18293;18294;18295 18293 3 0 4934900 8658700 GWDENVYYTVPLVR LQSREETRNAAWRKRGWDENVYYTVPLVRH RGWDENVYYTVPLVRHMESRIMIPLKISPL R G W V R H 0 1 1 1 0 0 1 1 0 0 1 0 0 0 1 0 1 1 2 3 0 0 14 0 1709.8413 Q9BPW8 Q9BPW8 255 268 NIPSNAP1 Protein NipSnap homolog 1 yes yes 2 0.003478 94.297 By MS/MS By matching 7 0 2 1 1 6830800 0 2588300 4242500 5178 1872 5391 21740;21741 18296 18296 1 0 1486200 752800 GWEEALENVIK YLSKSGICSLHPLLRGWEEALENVIKSTKP PLLRGWEEALENVIKSTKPGKLIGVANQKM R G W I K S 1 0 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 1 0 1 0 0 11 0 1286.6507 Q9H583 Q9H583 639 649 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.0065135 98.009 By MS/MS 1.5 0.5 1 1 2 17096000 0 0 17096000 5179 1984 5392 21742;21743 18297 18297 1 0 0 3714100 GWEEGVAQMSVGQR NKPFKFMLGKQEVIRGWEEGVAQMSVGQRA RGWEEGVAQMSVGQRAKLTISPDYAYGATG R G W Q R A 1 1 0 0 0 2 2 3 0 0 0 0 1 0 0 1 0 1 0 2 0 0 14 0 1532.7042 P62942 P62942 59 72 FKBP1A Peptidyl-prolyl cis-trans isomerase FKBP1A yes yes 2 1.0508E-24 198.62 By MS/MS 9 0 1 1 11779000 0 0 11779000 5180 1054 5393 21744 18298 18298 1 0 0 3762600 GWFDAEGQALDGVSISDLK TIIANPDIPEAYKLRGWFDAEGQALDGVSI AEGQALDGVSISDLKSGGVGGSNTNWKTLY R G W L K S 2 0 0 3 0 1 1 3 0 1 2 1 0 1 0 2 0 1 0 1 0 0 19 0 2006.9585 P27694 P27694 413 431 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 1.077E-08 141.73 By MS/MS 3 0 1 1 13278000 0 0 13278000 5181 679 5394 21745 18299 18299 1 0 0 2575400 GWGLLGPR DAERQAAAAACQLFKGWGLLGPRNELFDAA AACQLFKGWGLLGPRNELFDAAKYRVLADR K G W P R N 0 1 0 0 0 0 0 3 0 0 2 0 0 0 1 0 0 1 0 0 0 0 8 0 854.47627 Q7L2E3 Q7L2E3 123 130 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.00016302 142.63 By matching By MS/MS By MS/MS 2 0 3 1 1 1 12350000 1012400 4571000 6766100 5182 1522 5395 21746;21747;21748 18300;18301 18301 2 1219800 2058400 1529000 GWLQSSDHGQTSSLWWK LLSAIAFDIIALAGRGWLQSSDHGQTSSLW LQSSDHGQTSSLWWKCSQEGGGSGSYEEGC R G W W K C 0 0 0 1 0 2 0 2 1 0 2 1 0 0 0 4 1 3 0 0 0 0 17 0 2001.9333 Q96FX8 Q96FX8 34 50 PERP p53 apoptosis effector related to PMP-22 yes yes 3 0.0048867 58.671 By MS/MS 9 0 1 1 3452300 3452300 0 0 5183 1786 5396 21749 18302 18302 1 1937800 0 0 GWLYYEAGQR PRTKTKMSAAQALKKGWLYYEAGQRFLEVQ QALKKGWLYYEAGQRFLEVQYLTGGLIEPD K G W Q R F 1 1 0 0 0 1 1 2 0 0 1 0 0 0 0 0 0 1 2 0 0 0 10 0 1241.5829 Q15149 Q15149 4514 4523 PLEC Plectin yes yes 2 0.00059959 133.6 By MS/MS 1 0 1 1 4242000 0 4242000 0 5184 1348 5397 21750 18303 18303 1 0 2073400 0 GWNWGTVK THYRLELMEKDLCVKGWNWGTVKFGGQLLS EKDLCVKGWNWGTVKFGGQLLSFDIGDQPV K G W V K F 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 2 0 1 0 0 8 0 946.4661 Q08945 Q08945 106 113 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.0036154 104.45 By matching By MS/MS By MS/MS 4.11 1.91 2 3 1 1 2 2 2 5 81427000 1656700 22248000 57522000 5185 1186 5398 21751;21752;21753;21754;21755;21756;21757;21758;21759 18304;18305;18306;18307;18308;18309 18305 5 2381700 9581900 10944000 GWSHIHNTWETEETLK KNKEPGEIQYLIKWKGWSHIHNTWETEETL WSHIHNTWETEETLKQQNVRGMKKLDNYKK K G W L K Q 0 0 1 0 0 0 3 1 2 1 1 1 0 0 0 1 3 2 0 0 0 0 16 0 1966.9173 O14646 O14646 324 339 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 2.2852E-05 101.04 By MS/MS 1 0 1 1 12138000 0 0 12138000 5186 141 5399 21760 18310 18310 1 0 0 2615300 GWTGQESLSDSDPEMWELLQR QHSNAAQTQTGEANRGWTGQESLSDSDPEM SLSDSDPEMWELLQREKDRQCRGLELIASE R G W Q R E 0 1 0 2 0 2 3 2 0 0 3 0 1 0 1 3 1 2 0 0 0 0 21 0 2463.1013 P34897 P34897 42 62 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2;3 2.3874E-86 247.93 By MS/MS 4 0 2 2 27801000 0 0 27801000 5187 734 5400 21761;21762 18311;18312 18311 2 0 0 4540800 GWVHDSIDYR YWLFSDEVPGLFIEKGWVHDSIDYRFNHHC LFIEKGWVHDSIDYRFNHHCKDHTVSGDED K G W Y R F 0 1 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 1 1 1 0 0 10 0 1246.5731 Q9UIG0 Q9UIG0 927 936 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.0027861 104.44 By MS/MS 1.8 0.748 2 2 1 5 78638000 0 0 78638000 5188 2164 5401 21763;21764;21765;21766;21767 18313;18314 18313 2 0 0 17132000 GWVTFDR VALSEPQPERRFFRRGWVTFDRSVNIKEIC PERRFFRRGWVTFDRSVNIKEICWNLQNIR R G W D R S 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 1 0 0 7 0 879.4239 Q9BXP5 Q9BXP5 465 471 SRRT Serrate RNA effector molecule homolog yes yes 2 0.013384 114.54 By MS/MS 1.5 0.5 1 1 2 5322100 0 0 5322100 5189 1929 5402 21768;21769 18315 18315 1 0 0 1184100 GYAEVVVASENSVHK VELKFAENRANGQSKGYAEVVVASENSVHK GYAEVVVASENSVHKLLELLPGKVLNGEKV K G Y H K L 2 0 1 0 0 0 2 1 1 0 0 1 0 0 0 2 0 0 1 4 0 0 15 0 1587.7893 Q8N684 Q8N684 126 140 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2;3 2.9783E-12 183.99 By MS/MS By MS/MS 4.6 0.8 3 1 1 1 4 79203000 0 11127000 68075000 5190 1610 5403 21770;21771;21772;21773;21774 18316;18317;18318 18318 3 0 3692700 10900000 GYAFIEFASFEDAK ATFIKVPQNQNGKSKGYAFIEFASFEDAKE KGYAFIEFASFEDAKEALNSCNKREIEGRA K G Y A K E 3 0 0 1 0 0 2 1 0 1 0 1 0 3 0 1 0 0 1 0 0 0 14 0 1593.7351 P19338 P19338 524 537 NCL Nucleolin yes yes 2 1.7528E-11 180.36 By matching By MS/MS 2.33 0.943 1 3 1 1 2 4 82454000 0 2386600 80067000 5191 604 5404 21775;21776;21777;21778;21779;21780 18319;18320;18321;18322;18323;18324;18325;18326 18321 8 0 1047000 17122000 GYAFIEYEHER KRIHMVYSKRSGKPRGYAFIEYEHERDMHS GKPRGYAFIEYEHERDMHSAYKHADGKKID R G Y E R D 1 1 0 0 0 0 3 1 1 1 0 0 0 1 0 0 0 0 2 0 0 0 11 0 1412.6361 P08621 P08621 145 155 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2;3 4.3222E-07 156.94 By matching By matching By MS/MS 4.29 0.452 5 2 2 1 4 171960000 7956800 2020000 161980000 5192 474 5405 21781;21782;21783;21784;21785;21786;21787 18327;18328;18329 18327 3 6207700 670360 25937000 GYAFNHSADFETVR GRDITRYLIKLLLLRGYAFNHSADFETVRM RGYAFNHSADFETVRMIKEKLCYVGYNIEQ R G Y V R M 2 1 1 1 0 0 1 1 1 0 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1612.727 P61160 P61160 201 214 ACTR2 Actin-related protein 2 yes yes 2;3 2.5557E-11 178.1 By matching By MS/MS By MS/MS 4.67 0.471 2 4 1 2 3 65372000 3507500 13966000 47899000 5193 981 5406 21788;21789;21790;21791;21792;21793 18330;18331;18332;18333 18333 4 2736500 3599900 6726700 GYAFVQYSNER IFSKYGRVAGCSVHKGYAFVQYSNERHARA SVHKGYAFVQYSNERHARAAVLGENGRVLA K G Y E R H 1 1 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 2 1 0 0 11 0 1332.6099 Q9UKM9 Q9UKM9 56 66 RALY RNA-binding protein Raly yes yes 2 1.4556E-46 219.51 By MS/MS By MS/MS By MS/MS 5.27 1.76 1 1 2 1 3 2 1 4 4 3 211030000 32465000 103490000 75083000 5194 2181 5407 21794;21795;21796;21797;21798;21799;21800;21801;21802;21803;21804 18334;18335;18336;18337;18338;18339;18340 18337 7 35792000 35539000 11467000 GYAYTFITEDQAR DYVHRAGRTGRAGNKGYAYTFITEDQARYA NKGYAYTFITEDQARYAGDIIKALELSGTA K G Y A R Y 2 1 0 1 0 1 1 1 0 1 0 0 0 1 0 0 2 0 2 0 0 0 13 0 1533.71 Q7L014 Q7L014 717 729 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.00033957 142.92 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 22371000 0 6168100 16203000 5195 1520 5408 21805;21806;21807;21808 18341;18342 18342 2 0 2828800 3560600 GYAYVEFENPDEAEK MIDMPVERMHPHLSKGYAYVEFENPDEAEK GYAYVEFENPDEAEKALKHMDGGQIDGQEI K G Y E K A 2 0 1 1 0 0 4 1 0 0 0 1 0 1 1 0 0 0 2 1 0 0 15 0 1759.7577 Q15287 Q15287 204 218 RNPS1 RNA-binding protein with serine-rich domain 1 yes yes 2 0.00026472 149.23 By MS/MS By MS/MS 3.33 1.49 1 1 1 1 2 1 5 94053000 0 6200200 87853000 5196 1353 5409 21809;21810;21811;21812;21813;21814 18343;18344;18345;18346;18347 18345 5 0 1598200 14020000 GYDDRDYYSR GSSRRRDYYDRGYDRGYDDRDYYSRSYRGG RGYDRGYDDRDYYSRSYRGGGGGGGGWRAA R G Y S R S 0 2 0 3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 3 0 0 0 10 1 1308.5371 P62995 P62995 229 238 TRA2B Transformer-2 protein homolog beta yes yes 2;3 1.3107E-37 208.25 By MS/MS By MS/MS 5.18 1.53 1 1 1 2 4 2 3 8 312340000 0 45243000 267100000 5197 1055 5410 21815;21816;21817;21818;21819;21820;21821;21822;21823;21824;21825 18348;18349;18350;18351;18352;18353;18354;18355 18352 8 0 15780000 39410000 GYDRYEDYDYR GGRRRDSYYDRGYDRGYDRYEDYDYRYRRR GYDRGYDRYEDYDYRYRRRSPSPYYSRYRS R G Y Y R Y 0 2 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 11 1 1513.611 Q13595 Q13595 245 255 TRA2A Transformer-2 protein homolog alpha yes yes 2;3 1.3624E-25 198.62 By MS/MS 5.33 0.471 2 1 3 44067000 0 0 44067000 5198 1260 5411 21826;21827;21828 18356;18357;18358 18357 3 0 0 6207500 GYDVIAQAQSGTGK KPSAIQQRAILPCIKGYDVIAQAQSGTGKT KGYDVIAQAQSGTGKTATFAISILQQIELD K G Y G K T 2 0 0 1 0 2 0 3 0 1 0 1 0 0 0 1 1 0 1 1 0 0 14 0 1393.6838 P60842;Q14240 P60842 69 82 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 2.6125E-12 172.8 By MS/MS By MS/MS 8.33 2.05 1 1 1 3 4 2 64823000 0 53976000 10847000 5199 967;1294 5412 21829;21830;21831;21832;21833;21834 18359;18360;18361;18362;18363 18362 4 0 14379000 12915000 GYEEVHVPALKPKPFGSEEQLLPVEK KRCQLPDGSFRRQRKGYEEVHVPALKPKPF PKPFGSEEQLLPVEKLPKYAQAGFEGFKTL K G Y E K L 1 0 0 0 0 1 5 2 1 0 3 3 0 1 4 1 0 0 1 3 0 0 26 2 2919.5382 O75643 O75643 441 466 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 0.00026242 54.263 By MS/MS By MS/MS 1 0 2 1 1 24587000 0 5625500 18962000 5200 277 5413 21835;21836 18364;18365 18365 2 0 2749700 4085600 GYEEWLLNEIR SDINNGWQHLEQAEKGYEEWLLNEIRRLER QAEKGYEEWLLNEIRRLERLDHLAEKFRQK K G Y I R R 0 1 1 0 0 0 3 1 0 1 2 0 0 0 0 0 0 1 1 0 0 0 11 0 1420.6987 O43707;P12814;P35609 O43707 396 406 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 2 1.9085E-26 197.96 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 59921000 0 5865700 54056000 5201 210;540 5414 21837;21838;21839 18366;18367 18367 2 0 2641400 12174000 GYEEWLLNEIRR SDINNGWQHLEQAEKGYEEWLLNEIRRLER AEKGYEEWLLNEIRRLERLDHLAEKFRQKA K G Y R R L 0 2 1 0 0 0 3 1 0 1 2 0 0 0 0 0 0 1 1 0 0 0 12 1 1576.7998 O43707;P12814;P35609 O43707 396 407 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 3 0.0076124 74.76 By MS/MS 2 0 1 1 1138400 0 1138400 0 5202 210;540 5415 21840 18368 18368 1 0 512640 0 GYELLFQPEVVR ANDTVDFPKRTSPARGYELLFQPEVVRIYI PARGYELLFQPEVVRIYISLLKESKTPAIL R G Y V R I 0 1 0 0 0 1 2 1 0 0 2 0 0 1 1 0 0 0 1 2 0 0 12 0 1448.7664 O60716 O60716 655 666 CTNND1 Catenin delta-1 yes yes 2 0.00042158 127.4 By matching By MS/MS 3 0 2 1 1 3124600 1267200 1857400 0 5203 230 5416 21841;21842 18369 18369 1 1462100 791820 0 GYFDEEMNR PVHSHRVPVDVAYRRGYFDEEMNRVLADPS DVAYRRGYFDEEMNRVLADPSDDTKGFFDP R G Y N R V 0 1 1 1 0 0 2 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 9 0 1159.4604 P58107;Q15149 Q15149 2970 2978 EPPK1;PLEC Epiplakin;Plectin no no 2 0.00068798 130 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 122380000 0 63201000 59177000 5204 1348;958 5417;5418 21843;21844;21845;21846 18370;18371;18372 18372 456 3 0 30775000 12751000 GYFEHREDR QFQSRKRPYEENRGRGYFEHREDRRGRSPQ EENRGRGYFEHREDRRGRSPQPPAEEDEDD R G Y D R R 0 2 0 1 0 0 2 1 1 0 0 0 0 1 0 0 0 0 1 0 0 0 9 1 1207.537 Q9BUJ2 Q9BUJ2 182 190 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 3 0.017031 66.435 By MS/MS 2 0 1 1 3017300 0 3017300 0 5205 1907 5419 21847 18373 18373 1 0 1358800 0 GYFEYIEENK DKKRGVKRPREDHGRGYFEYIEENKYSRAK EDHGRGYFEYIEENKYSRAKSPQPPVEEED R G Y N K Y 0 0 1 0 0 0 3 1 0 1 0 1 0 1 0 0 0 0 2 0 0 0 10 0 1290.5768 Q00839 Q00839 256 265 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 0.00034368 138.78 By matching By MS/MS 1.75 0.829 2 1 1 1 3 173710000 0 1070000 172640000 5206 1127 5420 21848;21849;21850;21851 18374;18375 18375 2 0 523000 38389000 GYFEYIEENKYSR DKKRGVKRPREDHGRGYFEYIEENKYSRAK GRGYFEYIEENKYSRAKSPQPPVEEEDEHF R G Y S R A 0 1 1 0 0 0 3 1 0 1 0 1 0 1 0 1 0 0 3 0 0 0 13 1 1696.7733 Q00839 Q00839 256 268 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 1.1008E-71 246.59 By MS/MS By MS/MS 2 0.707 2 4 2 2 6 287320000 0 55415000 231900000 5207 1127 5421 21852;21853;21854;21855;21856;21857;21858;21859 18376;18377;18378;18379;18380;18381 18378 6 0 24954000 51494000 GYFNEELSEILSDPSDDTK PKESHRLPVDIAYKRGYFNEELSEILSDPS EELSEILSDPSDDTKGFFDPNTEENLTYLQ R G Y T K G 0 0 1 3 0 0 3 1 0 1 2 1 0 1 1 3 1 0 1 0 0 0 19 0 2157.959 P15924 P15924 2395 2413 DSP Desmoplakin yes yes 2 1.7833E-08 110.98 By MS/MS By MS/MS 4 3.56 1 1 1 1 2 9862600 632320 0 9230300 5208 572 5422 21860;21861;21862 18382;18383;18384 18383 3 354930 0 2020900 GYFSEEMNR PVHSHRVPVDVAYQRGYFSEEMNRVLADPS DVAYQRGYFSEEMNRVLADPSDDTKGFFDP R G Y N R V 0 1 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 1 0 0 0 9 0 1131.4655 Q15149 Q15149 3629 3637 PLEC Plectin yes yes 2 0.00019971 140.98 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 33264000 0 13092000 20173000 5209 1348 5423 21863;21864;21865 18385;18386 18386 2 0 6399100 4370800 GYGFGLIK TYADLGKSARDVFTKGYGFGLIKLDLKTKS ARDVFTKGYGFGLIKLDLKTKSENGLEFTS K G Y I K L 0 0 0 0 0 0 0 3 0 1 1 1 0 1 0 0 0 0 1 0 0 0 8 0 853.46979 P21796 P21796 21 28 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 0.054079 71.949 By matching By MS/MS 6.33 0.471 2 1 1 2 58097000 7619600 0 50477000 5210 625 5424 21866;21867;21868 18387 18387 1 10146000 0 7622700 GYGFIEYEK KSCTLARDPTTGKHKGYGFIEYEKAQSSQD TTGKHKGYGFIEYEKAQSSQDAVSSMNLFD K G Y E K A 0 0 0 0 0 0 2 2 0 1 0 1 0 1 0 0 0 0 2 0 0 0 9 0 1104.5128 Q9UHX1 Q9UHX1 268 276 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 0.065951 67.464 By matching By MS/MS 4 0 2 1 1 22985000 3955000 0 19030000 5211 2158 5425 21869;21870 18388 18388 1 3085600 0 3108300 GYGFVDFDSPSAAQK VSTKAILDKTTNKCKGYGFVDFDSPSAAQK GYGFVDFDSPSAAQKAVTALKASGVQAQMA K G Y Q K A 2 0 0 2 0 1 0 2 0 0 0 1 0 2 1 2 0 0 1 1 0 0 15 0 1587.7205 Q15434 Q15434 98 112 RBMS2 RNA-binding motif, single-stranded-interacting protein 2 yes yes 2 0.018249 69.65 By MS/MS 5 0 1 1 1600200 0 1600200 0 5212 1367 5426 21871 18389 18389 1 0 412480 0 GYGFVHFETQEAAER NILSCKVVCDENGSKGYGFVHFETQEAAER GYGFVHFETQEAAERAIEKMNGMLLNDRKV K G Y E R A 2 1 0 0 0 1 3 2 1 0 0 0 0 2 0 0 1 0 1 1 0 0 15 0 1739.7903 P11940 P11940 139 153 PABPC1 Polyadenylate-binding protein 1 yes yes 2;3 5.2427E-05 127.3 By MS/MS By matching 3 0.707 1 2 1 3 1 34016000 0 26458000 7558100 5213 530 5427 21872;21873;21874;21875 18390;18391 18390 2 0 11320000 1234500 GYGFVSFYNK SDARVVKDMATGKSKGYGFVSFYNKLDAEN TGKSKGYGFVSFYNKLDAENAIVHMGGQWL K G Y N K L 0 0 1 0 0 0 0 2 0 0 0 1 0 2 0 1 0 0 2 1 0 0 10 0 1180.5553 Q01085 Q01085 139 148 TIAL1 Nucleolysin TIAR yes yes 2 0.032651 77.318 By MS/MS 5 0 1 1 8735200 0 8735200 0 5214 1129 5428 21876 18392 18392 1 0 2251700 0 GYGLVEGHDRR QTTAGTILDGVNVGRGYGLVEGHDRRQFEI NVGRGYGLVEGHDRRQFEITSVSVDVWHIL R G Y R R Q 0 2 0 1 0 0 1 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 11 1 1257.6214 O95425 O95425 1735 1745 SVIL Supervillin yes yes 3 0.068263 36.684 By MS/MS 1 0 1 1 1810600 0 0 1810600 5215 325 5429 21877 18393 18393 1 0 0 390120 GYGMASPGLAAPSLTPPQLATPNLQQFFPQATR TAGLTMPTATLGNLRGYGMASPGLAAPSLT LATPNLQQFFPQATRQSLLGPPPVGVPMNP R G Y T R Q 5 1 1 0 0 4 0 3 0 0 4 0 1 2 6 2 3 0 1 0 0 0 33 0 3426.7394 Q9ULV3 Q9ULV3 124 156 CIZ1 Cip1-interacting zinc finger protein yes yes 3 8.1718E-07 51.479 By MS/MS 2 0 1 1 676500 0 676500 0 5216 2191 5430 21878 18394 18394 1 0 304640 0 GYGYGQGAGTLNMDR EIYCKSCYGKKYGPKGYGYGQGAGTLNMDR GYGYGQGAGTLNMDRGERLGIKPESVQPHR K G Y D R G 1 1 1 1 0 1 0 5 0 0 1 0 1 0 0 0 1 0 2 0 0 0 15 0 1558.6834 Q16527 Q16527 70 84 CSRP2 Cysteine and glycine-rich protein 2 yes yes 2 0.00059721 105.36 By MS/MS By matching 7 0 2 1 1 12986000 0 4469200 8516500 5217 1386 5431 21879;21880 18395 18395 1 0 2566300 1511200 GYGYGQGAGTLSTDK EIYCKSCYGKKYGPKGYGYGQGAGTLSTDK GYGYGQGAGTLSTDKGESLGIKHEEAPGHR K G Y D K G 1 0 0 1 0 1 0 5 0 0 1 1 0 0 0 1 2 0 2 0 0 0 15 0 1473.6736 P21291 P21291 70 84 CSRP1 Cysteine and glycine-rich protein 1 yes yes 2 0.00073122 99.752 By MS/MS 7 0 1 1 4460900 0 0 4460900 5218 622 5432 21881 18396 18396 1 0 0 791550 GYGYGQGAGTLSTDKGESLGIK EIYCKSCYGKKYGPKGYGYGQGAGTLSTDK AGTLSTDKGESLGIKHEEAPGHRPTTNPNA K G Y I K H 1 0 0 1 0 1 1 7 0 1 2 2 0 0 0 2 2 0 2 0 0 0 22 1 2158.0542 P21291 P21291 70 91 CSRP1 Cysteine and glycine-rich protein 1 yes yes 3 3.4781E-09 90.22 By matching By MS/MS 7 0 2 1 1 25793000 0 7603000 18190000 5219 622 5433 21882;21883 18397 18397 1 0 4365700 3227700 GYISIPVIHEQNVTR PSSGRSSLGSHQLPRGYISIPVIHEQNVTR GYISIPVIHEQNVTRPAAQPSFHQAQKTHY R G Y T R P 0 1 1 0 0 1 1 1 1 3 0 0 0 0 1 1 1 0 1 2 0 0 15 0 1724.921 O95817 O95817 204 218 BAG3 BAG family molecular chaperone regulator 3 yes yes 3 0.016515 53.995 By MS/MS 3 0 1 1 2145200 0 2145200 0 5220 343 5434 21884 18398 18398 1 0 914490 0 GYISPYFINTSK LNDELEIIEGMKFDRGYISPYFINTSKGQK FDRGYISPYFINTSKGQKCEFQDAYVLLSE R G Y S K G 0 0 1 0 0 0 0 1 0 2 0 1 0 1 1 2 1 0 2 0 0 0 12 0 1388.6976 P10809 P10809 222 233 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 5.7164E-08 167.12 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 44781000 0 26969000 17812000 5221 515 5435 21885;21886 18399;18400 18400 2 0 8950000 3454700 GYKHTLNQIDSVK AALAAVDYINKHLPRGYKHTLNQIDSVKVW PRGYKHTLNQIDSVKVWPRRPTGEVYDIEI R G Y V K V 0 0 1 1 0 1 0 1 1 1 1 2 0 0 0 1 1 0 1 1 0 0 13 1 1501.7889 CON__P12763 CON__P12763 55 67 yes yes 3 0.0044293 78.541 By matching By MS/MS 5.86 2.36 1 2 1 1 1 1 2 5 51120000 33176000 17944000 0 + 5222 55 5436 21887;21888;21889;21890;21891;21892;21893 18401;18402 18401 2 26508000 35048000 0 GYLTDLNSMIPTHGGDINDIKK QVSDSVSGQTVVDPKGYLTDLNSMIPTHGG SMIPTHGGDINDIKKARLLLKSVRETNPHH K G Y K K A 0 0 2 3 0 0 0 3 1 3 2 2 1 0 1 1 2 0 1 0 0 0 22 1 2401.1948 O94906 O94906 272 293 PRPF6 Pre-mRNA-processing factor 6 yes yes 3;4 0.0043116 45.885 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 38063000 0 19557000 18506000 5223 305 5437 21894;21895;21896;21897 18403;18404;18405 18403 3 0 8806600 4160700 GYLVTQDELDQTLEEFK LWKIRKTIMQLCHDRGYLVTQDELDQTLEE LVTQDELDQTLEEFKAQSGDKPSEGRPRRT R G Y F K A 0 0 0 2 0 2 3 1 0 0 3 1 0 1 0 0 2 0 1 1 0 0 17 0 2026.9735 P19388 P19388 25 41 POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1 yes yes 2 0.00035764 97.911 By MS/MS 7 0 1 1 10485000 0 0 10485000 5224 607 5438 21898 18406;18407 18406 2 0 0 1860500 GYMTQFPTFPSWLGK AQAIYASVLPGELMRGYMTQFPTFPSWLGK GYMTQFPTFPSWLGKHSSTGKHDRIVQDLA R G Y G K H 0 0 0 0 0 1 0 2 0 0 1 1 1 2 2 1 2 1 1 0 0 0 15 0 1758.844 P35251 P35251 951 965 RFC1 Replication factor C subunit 1 yes yes 2 0.0012644 96.113 By MS/MS 3 0.816 1 1 1 3 7092300 0 7092300 0 5225 746 5439 21899;21900;21901 18408 18408 1 0 3107600 0 GYNATVLAYGQTGSGK VFNTAVAPLIKGVFKGYNATVLAYGQTGSG YNATVLAYGQTGSGKTYSMGGAYTAEQENE K G Y G K T 2 0 1 0 0 1 0 4 0 0 1 1 0 0 0 1 2 0 2 1 0 0 16 0 1585.7736 O95239;Q2VIQ3 O95239 79 94 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 3.3249E-05 130.36 By MS/MS 2.5 0.5 1 1 2 11809000 0 0 11809000 5226 314 5440 21902;21903 18409 18409 1 0 0 2574400 GYNDDYYEESYFTTR YDLPKKEDALLYQSKGYNDDYYEESYFTTR GYNDDYYEESYFTTRTYGEPESAGPSRAVR K G Y T R T 0 1 1 2 0 0 2 1 0 0 0 0 0 1 0 1 2 0 4 0 0 0 15 0 1921.7643 P50402 P50402 89 103 EMD Emerin yes yes 2 2.1646E-58 231.7 By matching By MS/MS 6 0 2 1 1 22202000 0 1286100 20916000 5227 878 5441 21904;21905 18410 18410 1 0 445190 3129300 GYPHWPAR TRDFKPGDLIFAKMKGYPHWPARVDEVPDG LIFAKMKGYPHWPARVDEVPDGAVKPPTNK K G Y A R V 1 1 0 0 0 0 0 1 1 0 0 0 0 0 2 0 0 1 1 0 0 0 8 0 982.47733 Q7Z4V5;O75475;Q9Y3E1;P51858 O75475 17 24 HDGFRP2;PSIP1;HDGFRP3;HDGF Hepatoma-derived growth factor-related protein 2;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor-related protein 3;Hepatoma-derived growth factor no no 2 0.01434 88.734 By matching By MS/MS 4 2 1 1 1 1 1 1 1 2 5 109220000 0 4173700 105050000 5228 262;1533;899;2273 5442 21906;21907;21908;21909;21910;21911;21912 18411;18412 18411 2 0 1932900 16844000 GYPTLLWFR DCTQHYELCSGNQVRGYPTLLWFRDGKKVD SGNQVRGYPTLLWFRDGKKVDQYKGKRDLE R G Y F R D 0 1 0 0 0 0 0 1 0 0 2 0 0 1 1 0 1 1 1 0 0 0 9 0 1151.6128 Q8NBS9 Q8NBS9 261 269 TXNDC5 Thioredoxin domain-containing protein 5 yes yes 2 0.0042344 98.418 By MS/MS By MS/MS 5.2 0.748 1 2 2 2 3 5776200 0 3672800 2103400 5229 1628 5443 21913;21914;21915;21916;21917 18413;18414;18415 18415 3 0 965020 318460 GYSFSLTTFSPSGK ______________________________ RGYSFSLTTFSPSGKLVQIEYALAAVAGGA R G Y G K L 0 0 0 0 0 0 0 2 0 0 1 1 0 2 1 4 2 0 1 0 0 0 14 0 1477.7089 P25787 P25787 5 18 PSMA2 Proteasome subunit alpha type-2 yes yes 2 0.00037893 129.82 By matching By MS/MS By MS/MS 7 0 3 1 1 1 9434600 955750 2726600 5752300 5230 662 5444 21918;21919;21920 18416;18417 18417 2 2059800 1565600 1020700 GYSFTTTAER GRDLTDYLMKILTERGYSFTTTAEREIVRD ILTERGYSFTTTAEREIVRDIKEKLCYVAL R G Y E R E 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 3 0 1 0 0 0 10 0 1131.5197 P60709;P63261 P60709 197 206 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2 1.5335E-38 209.11 By MS/MS By MS/MS By MS/MS 5.33 2.94 3 2 3 2 3 2 3 1 2 3 6 10 8 4586100000 190870000 2406700000 1988500000 5231 966;1069 5445 21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944 18418;18419;18420;18421;18422;18423;18424;18425;18426;18427;18428;18429;18430;18431;18432;18433;18434;18435;18436;18437;18438;18439;18440;18441;18442;18443;18444;18445;18446;18447;18448;18449;18450 18432 33 201000000 866180000 402660000 GYSFVTTAER GRDLTDYLMKILTERGYSFVTTAEREIVRD ILTERGYSFVTTAEREIVRDIKEKLCYVAL R G Y E R E 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 1 2 0 1 1 0 0 10 0 1129.5404 P68032;P63267;P68133;P62736 P68032 199 208 ACTC1;ACTG2;ACTA1;ACTA2 Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle yes no 2 0.0038994 99.305 By MS/MS 5 0 1 1 0 0 0 0 5232 1075 5446 21945 18451 18451 1 0 0 0 GYSLVSGGTDNHLVLVDLRPK VLKNARAMADALLERGYSLVSGGTDNHLVL GGTDNHLVLVDLRPKGLDGARAERVLELVS R G Y P K G 0 1 1 2 0 0 0 3 1 0 4 1 0 0 1 2 1 0 1 3 0 0 21 1 2239.1961 P34897 P34897 369 389 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 3;4 2.2734E-14 130.85 By MS/MS By MS/MS 4.43 0.495 4 3 3 4 183120000 0 58717000 124400000 5233 734 5447 21946;21947;21948;21949;21950;21951;21952 18452;18453;18454;18455;18456;18457;18458 18455 7 0 18828000 19836000 GYSPTHREEEYGK GGKRHESSSEKKERKGYSPTHREEEYGKNH RKGYSPTHREEEYGKNHHNSSKKEKNKTEN K G Y G K N 0 1 0 0 0 0 3 2 1 0 0 1 0 0 1 1 1 0 2 0 0 0 13 1 1551.6954 CON__P20930;P20930 CON__P20930 163 175 FLG Filaggrin yes no 3 0.058256 45.257 By matching By MS/MS 7.4 1.85 1 1 1 1 1 1 4 3919500 0 207200 3712300 + 5234 62 5448 21953;21954;21955;21956;21957 18459;18460 18460 2 0 53409 1708100 GYSSLLKR RGGFNTFRDRENYDRGYSSLLKRDFGAKTQ DRENYDRGYSSLLKRDFGAKTQNGVYSAAN R G Y K R D 0 1 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 1 0 0 0 8 1 922.52362 P17844 P17844 517 524 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 2.5101E-10 132.96 By MS/MS 4 0 1 1 0 0 0 0 5235 588 5449 21958 18461 18461 1 0 0 0 GYSVEEVYDLAKPFGGLK TEEMCVMLVSNLPNKGYSVEEVYDLAKPFG VEEVYDLAKPFGGLKDILILSSHKKAYIEI K G Y L K D 1 0 0 1 0 0 2 3 0 0 2 2 0 1 1 1 0 0 2 2 0 0 18 1 1970.9989 Q14966 Q14966 916 933 ZNF638 Zinc finger protein 638 yes yes 3 0.014303 48.053 By MS/MS 1 0 1 1 5006000 0 0 5006000 5236 1324 5450 21959 18462 18462 1 0 0 1078600 GYTIPLDKR EWKIPPCISNWKNAKGYTIPLDKRLAADGR NWKNAKGYTIPLDKRLAADGRGLQTVHINE K G Y K R L 0 1 0 1 0 0 0 1 0 1 1 1 0 0 1 0 1 0 1 0 0 0 9 1 1061.5869 Q13573 Q13573 259 267 SNW1 SNW domain-containing protein 1 yes yes 2 0.0075227 98.299 By MS/MS 3 0 1 1 7470500 0 7470500 0 5237 1259 5451 21960 18463 18463 1 0 3184700 0 GYTLAALGDLAQTLGR EVARILLGEGPTNQKGYTLAALGDLAQTLG YTLAALGDLAQTLGRARKQAVAREERDHLY K G Y G R A 3 1 0 1 0 1 0 3 0 0 4 0 0 0 0 0 2 0 1 0 0 0 16 0 1618.8679 Q9UHR6 Q9UHR6 304 319 ZNHIT2 Zinc finger HIT domain-containing protein 2 yes yes 2 0.001454 92.925 By MS/MS 5 0 1 1 1577600 0 1577600 0 5238 2156 5452 21961 18464 18464 1 0 406670 0 GYTLLSEGIDEMVGIIYKPK RRKRDEDRHDINKMKGYTLLSEGIDEMVGI SEGIDEMVGIIYKPKTKETRETYEVLLSFI K G Y P K T 0 0 0 1 0 0 2 3 0 3 2 2 1 0 1 1 1 0 2 1 0 0 20 1 2225.1654 O75643 O75643 86 105 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.7899E-12 133.71 By MS/MS 1.33 0.471 2 1 3 10110000 0 0 10110000 5239 277 5453 21962;21963;21964 18465;18466;18467 18465 3 0 0 2195900 GYTLVEYETYK KNIHLNLDRRTGYLKGYTLVEYETYKEAQA GYLKGYTLVEYETYKEAQAAMEGLNGQDLM K G Y Y K E 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 2 0 3 1 0 0 11 0 1364.65 Q9Y5S9 Q9Y5S9 115 125 RBM8A RNA-binding protein 8A yes yes 2 4.0498E-08 163.32 By MS/MS By MS/MS By MS/MS 7 0 3 1 1 1 160160000 3127300 12605000 144430000 5240 2302 5454 21965;21966;21967 18468;18469;18470 18469 3 6739900 7237800 25627000 GYTQQLAFR FGLEKRQGALELIKKGYTQQLAFRQPSSAF LELIKKGYTQQLAFRQPSSAFAAFVKRAPS K G Y F R Q 1 1 0 0 0 2 0 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 9 0 1082.5509 P01024 P01024 1052 1060 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 no no 2 3.6659E-05 149.4 By MS/MS 9.5 0.5 1 1 2 15465000 15465000 0 0 + 5241 371 5455 21968;21969 18471;18472 18472 2 12015000 0 0 GYVDQEMETALSSSSETFPTPDGQGR PTSHHHLPMPVAIQRGYVDQEMETALSSSS SSSSETFPTPDGQGRTSYAQLLEECPRDET R G Y G R T 1 1 0 2 0 2 3 3 0 0 1 0 1 1 2 4 3 0 1 1 0 0 26 0 2788.2134 P58107 P58107 1067 1092 EPPK1 Epiplakin yes yes 3 0.0025325 40.668 By MS/MS 1 0 1 1 1175900 0 1175900 0 5242 958 5456 21970 18473 18473 1 0 574770 0 GYVGSIQPHGVFFR EINSIQDIKEGQLLRGYVGSIQPHGVFFRL RGYVGSIQPHGVFFRLGPSVVGLARYSHVS R G Y F R L 0 1 0 0 0 1 0 3 1 1 0 0 0 2 1 1 0 0 1 2 0 0 14 0 1562.7994 Q14690 Q14690 1329 1342 PDCD11 Protein RRP5 homolog yes yes 2;3 0.00036767 140.49 By matching By MS/MS By MS/MS 1.5 0.764 4 1 1 1 2 3 72154000 2028200 22596000 47530000 5243 1314 5457 21971;21972;21973;21974;21975;21976 18474;18475;18476;18477 18477 4 2028200 10797000 10160000 GYYEVTPPTLVQTQVEGGATLFK RSMVTRCFRDHFFDRGYYEVTPPTLVQTQV TLVQTQVEGGATLFKLDYFGEEAFLTQSSQ R G Y F K L 1 0 0 0 0 2 2 3 0 0 2 1 0 1 2 0 4 0 2 3 0 0 23 0 2497.2741 O43776 O43776 264 286 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2;3 7.3991E-35 186.68 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 29996000 0 16682000 13314000 5244 211 5458 21977;21978;21979;21980 18478;18479;18480 18479 3 0 5536100 2418600 HAAENPGKYNILGTNTIMDK MIGLPGAGKTTWVTKHAAENPGKYNILGTN PGKYNILGTNTIMDKMMVAGFKKQMADTGK K H A D K M 2 0 3 1 0 0 1 2 1 2 1 2 1 0 1 0 2 0 1 0 0 0 20 1 2186.079 Q00839 Q00839 517 536 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 4.6144E-14 148.2 By MS/MS 2 0 1 1 23764000 0 23764000 0 5245 1127 5459 21981 18481 18481 1 0 10701000 0 HAASTVQILGAEK ARLIAHAGSLLNLAKHAASTVQILGAEKAL AKHAASTVQILGAEKALFRALKSRRDTPKY K H A E K A 3 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1 1 0 0 1 0 0 13 0 1323.7147 Q9Y2X3 Q9Y2X3 311 323 NOP58 Nucleolar protein 58 yes yes 2;3 1.0914E-106 267.75 By MS/MS By MS/MS 4 1 3 3 1 1 3 5 145280000 0 21434000 123850000 5246 2254 5460 21982;21983;21984;21985;21986;21987;21988;21989 18482;18483;18484;18485;18486;18487;18488;18489 18483 8 0 7456700 22000000 HAEQERDELADEITNSASGK LQLQEELASSERARRHAEQERDELADEITN RDELADEITNSASGKSALLDEKRRLEARIA R H A G K S 3 1 1 2 0 1 4 1 1 1 1 1 0 0 0 2 1 0 0 0 0 0 20 1 2199.004 P35580 P35580 1705 1724 MYH10 Myosin-10 yes yes 3;4 1.0317E-46 214.74 By MS/MS By MS/MS 1 0 3 1 2 40277000 0 5568400 34709000 5247 753 5461 21990;21991;21992 18490;18491;18492 18490 3 0 2721800 7478600 HALIMDEVDGMAGNEDR KGFYSNGAASSVSTKHALIMDEVDGMAGNE LIMDEVDGMAGNEDRGGIQELIGLIKHTKI K H A D R G 2 1 1 3 0 0 2 2 1 1 1 0 2 0 0 0 0 0 0 1 0 0 17 0 1871.8142 P35251 P35251 715 731 RFC1 Replication factor C subunit 1 yes yes 2 0.010512 88.552 By MS/MS 2 0 1 1 5365500 0 0 5365500 5248 746 5462 21993 18493 18493 0 0 0 1212500 HALLEADVAAHQDR DYGKDLTNVQNLQKKHALLEADVAAHQDRI KHALLEADVAAHQDRIDGITIQARQFQDAG K H A D R I 4 1 0 2 0 1 1 0 2 0 2 0 0 0 0 0 0 0 0 1 0 0 14 0 1544.7696 Q13813 Q13813 720 733 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.7306E-08 172.57 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 74495000 0 10912000 63583000 5249 1268 5463 21994;21995;21996;21997 18494;18495;18496;18497 18495 3 0 5333600 13830000 HALLEADVAAHQDRIDGITIQAR DYGKDLTNVQNLQKKHALLEADVAAHQDRI AAHQDRIDGITIQARQFQDAGHFDAENIKK K H A A R Q 5 2 0 3 0 2 1 1 2 3 2 0 0 0 0 0 1 0 0 1 0 0 23 1 2512.3146 Q13813 Q13813 720 742 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 6.3414E-22 157.73 By MS/MS 1 0 1 1 22199000 0 0 22199000 5250 1268 5464 21998 18498 18498 1 0 0 4783100 HAMAVYER YLLYAQLEEEWGLARHAMAVYERATRAVEP EEWGLARHAMAVYERATRAVEPAQQYDMFN R H A E R A 2 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 1 0 0 8 0 975.45964 Q9HCS7 Q9HCS7 611 618 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.010151 93.561 By MS/MS 3 0 1 1 5296100 0 0 5296100 5251 2014 5465 21999 18499 18499 1 0 0 1027200 HAMTMQPYLTTK TLFLFSKIRPQLMVKHAMTMQPYLTTKCST MVKHAMTMQPYLTTKCSTQNDFMVICNVAK K H A T K C 1 0 0 0 0 1 0 0 1 0 1 1 2 0 1 0 3 0 1 0 0 0 12 0 1420.6843 Q6KC79 Q6KC79 2023 2034 NIPBL Nipped-B-like protein yes yes 2 0.00065049 122.74 By MS/MS 1 0 1 1 15877000 0 0 15877000 5252 1480 5466 22000 18500 18500 1 0 0 3421000 HAPINSAQHLDNVDQTGPK SDSAEDEKRKRKCQKHAPINSAQHLDNVDQ NSAQHLDNVDQTGPKAWKGSTTNDPPKQSP K H A P K A 2 0 2 2 0 2 0 1 2 1 1 1 0 0 2 1 1 0 0 1 0 0 19 0 2040.9977 O43159 O43159 139 157 RRP8 Ribosomal RNA-processing protein 8 yes yes 3;4 4.143E-12 163.79 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 61383000 0 10045000 51338000 5253 188 5467 22001;22002;22003;22004 18501;18502;18503 18502 3 0 3333700 8916500 HAPLADQILAGNAVR MPKFKAARGVGGQEKHAPLADQILAGNAVR HAPLADQILAGNAVRAGVREKRRGRGTGEA K H A V R A 4 1 1 1 0 1 0 1 1 1 2 0 0 0 1 0 0 0 0 1 0 0 15 0 1544.8423 Q13895 Q13895 16 30 BYSL Bystin yes yes 2;3 0.001234 90.653 By MS/MS By MS/MS 5 0 3 1 2 17751000 0 9125800 8625500 5254 1276 5468 22005;22006;22007 18504;18505;18506 18506 3 0 2352400 1203100 HAQANGFSVVR KPGVRYRELGNIIQKHAQANGFSVVRSYCG IIQKHAQANGFSVVRSYCGHGIHKLFHTAP K H A V R S 2 1 1 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 2 0 0 11 0 1184.6051 P53582 P53582 279 289 METAP1 Methionine aminopeptidase 1 yes yes 2 0.019277 84.615 By MS/MS 5 0 1 1 4694100 0 4694100 0 5255 920 5469 22008 18507 18507 1 0 1210000 0 HASPILPITEFSDIPR SNESLVVNRVTGNFKHASPILPITEFSDIP ASPILPITEFSDIPRRAPKKPLTRAEVGEK K H A P R R 1 1 0 1 0 0 1 0 1 3 1 0 0 1 3 2 1 0 0 0 0 0 16 0 1791.9519 P42167 P42167 304 319 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2;3 2.2534E-18 186.76 By MS/MS By MS/MS 4.92 1.8 1 2 3 1 2 2 1 2 10 231700000 0 28502000 203190000 5256 799 5470 22009;22010;22011;22012;22013;22014;22015;22016;22017;22018;22019;22020 18508;18509;18510;18511;18512;18513;18514;18515;18516;18517;18518;18519 18511 12 0 9715800 33717000 HATAEEVEEEER KPKRNEIDAEPPAKRHATAEEVEEEERDRI AKRHATAEEVEEEERDRIPGPVCKGKWKNK R H A E R D 2 1 0 0 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 12 0 1427.6165 Q8TDN6 Q8TDN6 33 44 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 6.9218E-09 173.71 By matching By MS/MS 4.25 0.829 1 1 2 1 3 34594000 0 5249600 29345000 5257 1663 5471 22021;22022;22023;22024 18520;18521 18520 2 0 2237900 4112600 HATAEEVEEEERDR KPKRNEIDAEPPAKRHATAEEVEEEERDRI RHATAEEVEEEERDRIPGPVCKGKWKNKER R H A D R I 2 2 0 1 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 14 1 1698.7445 Q8TDN6 Q8TDN6 33 46 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3 1.1628E-34 209.19 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 81827000 0 3489000 78338000 5258 1663 5472 22025;22026;22027;22028 18522;18523;18524 18524 3 0 899370 11133000 HATALEELSEQLEQAK ETKNHEAQIQDMRQRHATALEELSEQLEQA ATALEELSEQLEQAKRFKANLEKNKQGLET R H A A K R 3 0 0 0 0 2 4 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 16 0 1795.8952 P35580 P35580 1201 1216 MYH10 Myosin-10 yes yes 3 8.2783E-06 146.34 By MS/MS 1 0 1 1 13327000 0 0 13327000 5259 753 5473 22029 18525 18525 1 0 0 2871600 HATALEELSEQLEQAKR ETKNHEAQIQDMRQRHATALEELSEQLEQA TALEELSEQLEQAKRFKANLEKNKQGLETD R H A K R F 3 1 0 0 0 2 4 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 17 1 1951.9963 P35580 P35580 1201 1217 MYH10 Myosin-10 yes yes 3 0.0030545 79.317 By MS/MS 1 0 1 1 13910000 0 0 13910000 5260 753 5474 22030 18526 18526 0 0 0 2997200 HATIYPTEEELQAVQK LRRPDSSDDRYVMTKHATIYPTEEELQAVQ ATIYPTEEELQAVQKIVSITERALKLVSDS K H A Q K I 2 0 0 0 0 2 3 0 1 1 1 1 0 0 1 0 2 0 1 1 0 0 16 0 1855.9316 Q96KR1 Q96KR1 731 746 ZFR Zinc finger RNA-binding protein yes yes 2;3 1.1114E-08 171.26 By MS/MS By MS/MS 2 0 2 1 1 11632000 0 5739600 5892700 5261 1806 5475 22031;22032 18527;18528 18528 2 0 2584600 1331600 HAVSDPSILDSLDLNEDER DKYKRPGYGAYDAFKHAVSDPSILDSLDLN DPSILDSLDLNEDEREVLINNINRRLTPQA K H A E R E 1 1 1 4 0 0 2 0 1 1 3 0 0 0 1 3 0 0 0 1 0 0 19 0 2123.9971 P05198 P05198 155 173 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 1.0574E-79 240.59 By MS/MS 6 0 1 1 6159500 0 0 6159500 5262 428 5476 22033 18529 18529 1 0 0 921520 HAVSDPSILDSLDLNEDEREVLINNINR DKYKRPGYGAYDAFKHAVSDPSILDSLDLN LNEDEREVLINNINRRLTPQAVKIRADIEV K H A N R R 1 2 4 4 0 0 3 0 1 3 4 0 0 0 1 3 0 0 0 2 0 0 28 1 3189.5902 P05198 P05198 155 182 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 4 4.342E-43 166.91 By MS/MS By MS/MS 6 0 2 1 1 68366000 0 42523000 25843000 5263 428 5477 22034;22035 18530;18531 18531 2 0 14720000 3866400 HAVSEGTKAVTK IQTAVRLLLPGELAKHAVSEGTKAVTKYTS LAKHAVSEGTKAVTKYTSAK__________ K H A T K Y 2 0 0 0 0 0 1 1 1 0 0 2 0 0 0 1 2 0 0 2 0 0 12 1 1226.6619 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814;Q8N257 P06899 110 121 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 3 0.017903 66.663 By MS/MS 7.5 0.5 1 1 2 753400 0 753400 0 5264 451;644;953;1601 5478 22036;22037 18532 18532 1 0 353670 0 HAVSEGTKAVTKYTSAK IQTAVRLLLPGELAKHAVSEGTKAVTKYTS VSEGTKAVTKYTSAK_______________ K H A A K - 3 0 0 0 0 0 1 1 1 0 0 3 0 0 0 2 3 0 1 2 0 0 17 2 1776.937 P06899;P57053;O60814 P06899 110 126 HIST1H2BJ;H2BFS;HIST1H2BK Histone H2B type 1-J;Histone H2B type F-S;Histone H2B type 1-K no no 3;4 2.9003E-10 173.03 By MS/MS By MS/MS 7.88 0.927 3 4 1 4 4 57578000 0 21569000 36009000 5265 451;953 5479 22038;22039;22040;22041;22042;22043;22044;22045 18533;18534;18535;18536;18537 18537 5 0 10652000 7570300 HAVSEGTKAVTKYTSSK IQTAVRLLLPGELAKHAVSEGTKAVTKYTS VSEGTKAVTKYTSSK_______________ K H A S K - 2 0 0 0 0 0 1 1 1 0 0 3 0 0 0 3 3 0 1 2 0 0 17 2 1792.9319 Q16778;P33778;P23527;Q96A08;Q8N257 Q16778 110 126 HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;HIST3H2BB Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type 3-B no no 3;4 6.6475E-07 153.72 By MS/MS By MS/MS 8.27 1.05 3 4 2 2 4 7 215650000 0 68493000 147160000 5266 644;1601 5480 22046;22047;22048;22049;22050;22051;22052;22053;22054;22055;22056 18538;18539;18540;18541;18542;18543;18544;18545;18546 18544 9 0 33587000 26498000 HCNMVLENVK RNNKKLLGRVKAFDRHCNMVLENVKEMWTE KAFDRHCNMVLENVKEMWTEVPKSGKGKKK R H C V K E 0 0 2 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 0 0 10 0 1242.5849 P62316 P62316 62 71 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 0.0023445 105.98 By MS/MS 9 0 1 1 3676300 3676300 0 0 5267 1023 5481 22057 18547 18547 1 2063600 0 0 HCPYLDTINR RAKNGRVDSEDRRSRHCPYLDTINRSVLDF DRRSRHCPYLDTINRSVLDFDFEKLCSISL R H C N R S 0 1 1 1 1 0 0 0 1 1 1 0 0 0 1 0 1 0 1 0 0 0 10 0 1287.603 Q53GS9 Q53GS9 104 113 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2 0.034501 76.679 By MS/MS 3 0 1 1 0 0 0 0 5268 1426 5482 22058 18548 18548 1 0 0 0 HDADGQATLLNLLLR VRSFLHARLRTATLRHDADGQATLLNLLLR HDADGQATLLNLLLRNYLHYSLYDQAEKLV R H D L R N 2 1 1 2 0 1 0 1 1 0 5 0 0 0 0 0 1 0 0 0 0 0 15 0 1648.8897 O43242 O43242 242 256 PSMD3 26S proteasome non-ATPase regulatory subunit 3 yes yes 2 0.0085911 77.593 By MS/MS 4 0 1 1 1147000 0 0 1147000 5269 191 5483 22059 18549 18549 1 0 0 187350 HDDYLVMLK KAGVMALANLLQIQRHDDYLVMLKAIRILV LLQIQRHDDYLVMLKAIRILVQERLTQDAV R H D L K A 0 0 0 2 0 0 0 0 1 0 2 1 1 0 0 0 0 0 1 1 0 0 9 0 1132.5587 Q9Y224 Q9Y224 146 154 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.00057863 130.22 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 63791000 0 18356000 45435000 5270 2227 5484;5485 22060;22061;22062;22063;22064 18550;18551;18552 18551 723 3 0 9899000 8062100 HDFSFDR ERRGTLSGAPAPPTRHDFSFDRVFPPGSGQ GAPAPPTRHDFSFDRVFPPGSGQDEVFEEI R H D D R V 0 1 0 2 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 7 0 922.39333 Q9BW19 Q9BW19 370 376 KIFC1 Kinesin-like protein KIFC1 yes yes 2 0.021018 100.74 By MS/MS 3 0 1 1 7299500 0 0 7299500 5271 1919 5486 22065 18553 18553 1 0 0 1415800 HDIAFVEFDNEVQAGAAR NQFPGFKEVRLVPGRHDIAFVEFDNEVQAG AFVEFDNEVQAGAARDALQGFKITQNNAMK R H D A R D 4 1 1 2 0 1 2 1 1 1 0 0 0 2 0 0 0 0 0 2 0 0 18 0 1987.9388 P09012 P09012 244 261 SNRPA U1 small nuclear ribonucleoprotein A yes yes 3 0.00024639 83.964 By MS/MS By MS/MS 6 0 2 1 1 12214000 0 3808800 8405200 5272 481 5487 22066;22067 18554;18555 18555 1 0 1318500 1257500 HDPNMKYELQLANPK VPAQSSWNYNFMGVRHDPNMKYELQLANPK HDPNMKYELQLANPKEFYHEVHRPSHFLNF R H D P K E 1 0 2 1 0 1 1 0 1 0 2 2 1 0 2 0 0 0 1 0 0 0 15 1 1796.888 Q6P2Q9 Q6P2Q9 2288 2302 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.037588 41.014 By MS/MS 1 0 1 1 0 0 0 0 5273 1490 5488 22068 18556 18556 642 1 0 0 0 HDVGLPGVSR KVNRQKFQILGRKTRHDVGLPGVSRARALR GRKTRHDVGLPGVSRARALRKRTQTLLKEY R H D S R A 0 1 0 1 0 0 0 2 1 0 1 0 0 0 1 1 0 0 0 2 0 0 10 0 1035.5461 P78316 P78316 50 59 NOP14 Nucleolar protein 14 yes yes 2 0.040131 75.378 By MS/MS 2 0 1 1 2278700 0 0 2278700 5274 1083 5489 22069 18557 18557 1 0 0 514950 HDVIVSIVTAAK EYLKVRSHDPEEAIRHDVIVSIVTAAKKDI AIRHDVIVSIVTAAKKDILLVNDHLLNFVR R H D A K K 2 0 0 1 0 0 0 0 1 2 0 1 0 0 0 1 1 0 0 3 0 0 12 0 1251.7187 Q9NTI5 Q9NTI5 368 379 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 3.9989E-08 169.37 By MS/MS 1.5 0.5 1 1 2 30113000 0 0 30113000 5275 2053 5490 22070;22071 18558;18559 18558 2 0 0 6630800 HDVVFLITK EAQNDFPVAMQISEKHDVVFLITKYGYIHL MQISEKHDVVFLITKYGYIHLYDLETGTCI K H D T K Y 0 0 0 1 0 0 0 0 1 1 1 1 0 1 0 0 1 0 0 2 0 0 9 0 1070.6124 Q00610 Q00610 270 278 CLTC Clathrin heavy chain 1 yes yes 2 0.00062746 134.05 By MS/MS 1.5 0.5 1 1 2 79808000 0 0 79808000 5276 1125 5491 22072;22073 18560;18561 18560 2 0 0 17416000 HDYWLLAGIINHGYAR AATVTKKTYEIWHRRHDYWLLAGIINHGYA DYWLLAGIINHGYARWQDIQNDPRYAILNE R H D A R W 2 1 1 1 0 0 0 2 2 2 2 0 0 0 0 0 0 1 2 0 0 0 16 0 1897.9588 Q14839 Q14839 1733 1748 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 6.1629E-06 132.24 By MS/MS 1 0 1 1 7974000 0 0 7974000 5277 1321 5492 22074 18562 18562 1 0 0 1718100 HEAFESDLAAHQDR YETATLSDIKALIRKHEAFESDLAAHQDRV KHEAFESDLAAHQDRVEQIAAIAQELNELD K H E D R V 3 1 0 2 0 1 2 0 2 0 1 0 0 1 0 1 0 0 0 0 0 0 14 0 1624.723 O43707;Q08043;P12814;P35609 O43707 456 469 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 3 0.00020641 109.07 By MS/MS By MS/MS 2 0 2 1 1 9742100 0 3220900 6521200 5278 210;540 5493 22075;22076 18563;18564 18564 2 0 1450400 1473700 HEAMITDLEER EEEEKSKSLAKLKNKHEAMITDLEERLRRE LKNKHEAMITDLEERLRREEKQRQELEKTR K H E E R L 1 1 0 1 0 0 3 0 1 1 1 0 1 0 0 0 1 0 0 0 0 0 11 0 1342.6187 P35579 P35579 1025 1035 MYH9 Myosin-9 yes yes 2 1.2408E-13 180.36 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 62852000 0 30767000 32085000 5279 752 5494;5495 22077;22078;22079;22080 18565;18566;18567 18566 347 3 0 14961000 6913200 HEEEFDLFMR DEVPDDETVNQMIARHEEEFDLFMRMDLDR QMIARHEEEFDLFMRMDLDRRREEARNPKR R H E M R M 0 1 0 1 0 0 3 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 10 0 1351.5867 P51532 P51532 1309 1318 SMARCA4 Transcription activator BRG1 yes yes 2 0.00061699 115.71 By MS/MS 1.5 0.5 1 1 2 8568200 0 0 8568200 5280 894 5496 22081;22082 18568 18568 1 0 0 1864200 HEEQPAPGYDTHGR SRPRYEQAPRASALRHEEQPAPGYDTHGRL RHEEQPAPGYDTHGRLRPEAQPHPSAGPKP R H E G R L 1 1 0 1 0 1 2 2 2 0 0 0 0 0 2 0 1 0 1 0 0 0 14 0 1592.6968 Q07157 Q07157 1157 1170 TJP1 Tight junction protein ZO-1 yes yes 3 0.073795 32.275 By MS/MS 1 0 1 1 577580 0 577580 0 5281 1177 5497 22083 18569 18569 1 0 282310 0 HEERQDEHGYISR LTVKTKDGVVEITGKHEERQDEHGYISRCF GKHEERQDEHGYISRCFTRKYTLPPGVDPT K H E S R C 0 2 0 1 0 1 3 1 2 1 0 0 0 0 0 1 0 0 1 0 0 0 13 1 1654.7448 P04792 P04792 124 136 HSPB1 Heat shock protein beta-1 yes yes 4 0.035236 50.563 By MS/MS 7.5 1.12 1 1 1 1 4 8867100 0 0 8867100 5282 417 5498 22084;22085;22086;22087 18570 18570 1 0 0 1567700 HEGVFICR RGNQSGKNVMVEPHRHEGVFICRGKEDALV VMVEPHRHEGVFICRGKEDALVTKNLVPGE R H E C R G 0 1 0 0 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1016.4862 P22087 P22087 93 100 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2 4.6611E-06 158.36 By matching By MS/MS 4.5 1.12 1 1 1 1 3 1 58275000 38508000 0 19767000 5283 627 5499 22088;22089;22090;22091 18571 18571 1 33647000 0 2957300 HEHQLMLMR REAKEKLEAEMEAARHEHQLMLMRQDLMRR EMEAARHEHQLMLMRQDLMRRQEELRRLEE R H E M R Q 0 1 0 0 0 1 1 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 9 0 1193.5798 Q8WXF1 Q8WXF1 313 321 PSPC1 Paraspeckle component 1 yes yes 3 0.032256 60.828 By MS/MS 3.5 0.5 1 1 2 9817900 0 0 9817900 5284 1695 5500 22092;22093 18572 18572 656 1 0 0 1858200 HEHQVMLMR KEAREKLEMEMEAARHEHQVMLMRQDLMRR EMEAARHEHQVMLMRQDLMRRQEELRRMEE R H E M R Q 0 1 0 0 0 1 1 0 2 0 1 0 2 0 0 0 0 0 0 1 0 0 9 0 1179.5641 Q15233 Q15233 305 313 NONO Non-POU domain-containing octamer-binding protein yes yes 2 2.0611E-11 171.53 By MS/MS By MS/MS By MS/MS 3.71 1.28 1 1 3 2 1 2 4 38737000 4895200 6061400 27780000 5285 1351 5501 22094;22095;22096;22097;22098;22099;22100 18573;18574;18575;18576;18577;18578;18579 18577 7 3819100 1932000 4794500 HEILQWVLQTDSQQ SVNTIYDNAVQGLRRHEILQWVLQTDSQQ_ RHEILQWVLQTDSQQ_______________ R H E Q Q - 0 0 0 1 0 4 1 0 1 1 2 0 0 0 0 1 1 1 0 1 0 0 14 0 1723.8529 Q96AG4 Q96AG4 294 307 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.00039045 136.96 By MS/MS By MS/MS 6 0 2 1 1 32878000 0 11022000 21856000 5286 1751 5502 22101;22102 18580;18581 18581 2 0 3815300 3269900 HEISEMNR QQTAGRHGDDLRNTKHEISEMNRMIQRLRA DDLRNTKHEISEMNRMIQRLRAEIDNVKKQ K H E N R M 0 1 1 0 0 0 2 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 8 0 1014.4553 CON__P13647;P13647 CON__P13647 384 391 KRT5 Keratin, type II cytoskeletal 5 no no 2 2.6853E-14 183.9 By matching By MS/MS 6.45 2.23 2 1 2 2 2 1 1 4 7 33183000 0 1581400 31601000 + 5287 58 5503 22103;22104;22105;22106;22107;22108;22109;22110;22111;22112;22113 18582;18583;18584;18585;18586;18587;18588 18582 7 0 710030 11292000 HELIEFR YDNFDNISLAQRLEKHELIEFRRIAAYLFK SLAQRLEKHELIEFRRIAAYLFKGNNRWKQ K H E F R R 0 1 0 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 942.49232 Q00610 Q00610 1502 1508 CLTC Clathrin heavy chain 1 yes yes 2 3.0613E-07 164.89 By MS/MS 2 0.816 1 1 1 3 106400000 0 0 106400000 5288 1125 5504 22114;22115;22116 18589 18589 1 0 0 22911000 HELLLGAGSGPGAGQQQATPGALLQAGPPR RKGPELPLVPVKRQRHELLLGAGSGPGAGQ QQATPGALLQAGPPRCSSLQAPIMLLSGHE R H E P R C 5 1 0 0 0 4 1 7 1 0 5 0 0 0 4 1 1 0 0 0 0 0 30 0 2848.4944 Q96DI7 Q96DI7 22 51 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 3 3.1599E-97 222.47 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 40798000 0 19936000 20862000 5289 1767 5505 22117;22118;22119;22120 18590;18591;18592 18591 3 0 6362000 2978600 HELLQPFNVLYEK EDEKKARMGVVECAKHELLQPFNVLYEKEG AKHELLQPFNVLYEKEGEFVAQFKFTVLLM K H E E K E 0 0 1 0 0 1 2 0 1 0 3 1 0 1 1 0 0 0 1 1 0 0 13 0 1628.8562 Q9UQ80 Q9UQ80 299 311 PA2G4 Proliferation-associated protein 2G4 yes yes 2;3 6.6785E-58 234.92 By MS/MS By MS/MS 6.23 1.72 2 4 2 1 2 2 2 11 301890000 0 43623000 258270000 5290 2220 5506 22121;22122;22123;22124;22125;22126;22127;22128;22129;22130;22131;22132;22133 18593;18594;18595;18596;18597;18598;18599;18600;18601 18597 9 0 11245000 37744000 HELSTEYIPDPER CIVKFYNNVQGLVPKHELSTEYIPDPERVF PKHELSTEYIPDPERVFYTGQVVKVVVLNC K H E E R V 0 1 0 1 0 0 3 0 1 1 1 0 0 0 2 1 1 0 1 0 0 0 13 0 1584.742 Q14690 Q14690 572 584 PDCD11 Protein RRP5 homolog yes yes 2 1.3583E-88 255.7 By MS/MS 1 0 1 1 13385000 0 0 13385000 5291 1314 5507 22134 18602 18602 1 0 0 2884000 HEMLREELR DSSIVDNELWSEMRRHEMLREELRQRRKQL WSEMRRHEMLREELRQRRKQLEALMAEHQR R H E L R Q 0 2 0 0 0 0 3 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 9 1 1211.6081 Q15154 Q15154 829 837 PCM1 Pericentriolar material 1 protein yes yes 3 0.00038627 107.15 By MS/MS 1 0 1 1 6013200 0 0 6013200 5292 1349 5508 22135 18603 18603 1 0 0 1295600 HEMPPHIYAISESAYR IYSENIIEMYRGKKRHEMPPHIYAISESAY EMPPHIYAISESAYRCMLQDREDQSILCTG R H E Y R C 2 1 0 0 0 0 2 0 2 2 0 0 1 0 2 2 0 0 2 0 0 0 16 0 1899.8938 P35580 P35580 148 163 MYH10 Myosin-10 yes yes 3 2.26E-05 106.6 By MS/MS By MS/MS 1 0 2 1 1 17709000 0 6244200 11465000 5293 753 5509;5510 22136;22137 18604;18605 18604 369 2 0 3052100 2470200 HEMPPHIYAITDTAYR IYSEEIVEMYKGKKRHEMPPHIYAITDTAY EMPPHIYAITDTAYRSMMQDREDQSILCTG R H E Y R S 2 1 0 1 0 0 1 0 2 2 0 0 1 0 2 0 2 0 2 0 0 0 16 0 1913.9094 P35579 P35579 144 159 MYH9 Myosin-9 yes yes 3 2.5448E-08 146.78 By MS/MS By MS/MS 2.18 1.34 5 2 2 1 1 7 4 101710000 0 84403000 17309000 5294 752 5511;5512 22138;22139;22140;22141;22142;22143;22144;22145;22146;22147;22148 18606;18607;18608;18609;18610;18611;18612;18613 18612 348 8 0 40186000 3339200 HEPVQPSAHHSAEPAEAGK FKKVKKDKKEEKEGKHEPVQPSAHHSAEPA QPSAHHSAEPAEAGKAETSEGSGSAPAVPE K H E G K A 4 0 0 0 0 1 3 1 3 0 0 1 0 0 3 2 0 0 0 1 0 0 19 0 1977.9293 P51608 P51608 43 61 MECP2 Methyl-CpG-binding protein 2 yes yes 3;4 0.0021126 59.733 By MS/MS By MS/MS 2.67 0.943 1 1 3 1 1 5 19046000 0 1582000 17464000 5295 896 5513 22149;22150;22151;22152;22153;22154 18614;18615;18616;18617 18615 4 0 674420 3380100 HETWSGHVISS QAVEVVITHLAPGTKHETWSGHVISS____ PGTKHETWSGHVISS_______________ K H E S S - 0 0 0 0 0 0 1 1 2 1 0 0 0 0 0 3 1 1 0 1 0 0 11 0 1238.568 Q9Y2V2 Q9Y2V2 137 147 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 2 0.011527 88.948 By MS/MS By matching 8.2 0.748 1 2 2 3 2 39003000 31529000 0 7474400 5296 2251 5514 22155;22156;22157;22158;22159 18618;18619 18618 2 33654000 0 1717400 HEVEKSEISENTDASGK STESKKMENCLGESRHEVEKSEISENTDAS VEKSEISENTDASGKIEKYNVPLNRLKMMF R H E G K I 1 0 1 1 0 0 4 1 1 1 0 2 0 0 0 3 1 0 0 1 0 0 17 1 1858.8545 Q9UHB6 Q9UHB6 170 186 LIMA1 LIM domain and actin-binding protein 1 yes yes 3 0.020104 47.113 By MS/MS 2 0 1 1 1351300 0 1351300 0 5297 2150 5515 22160 18620 18620 1 0 608520 0 HEVGALVR LKLVFPGAQRMNRGRHEVGALVRACKANGV QRMNRGRHEVGALVRACKANGVTDLLVVHE R H E V R A 1 1 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 879.49265 Q96G21 Q96G21 119 126 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 2 0.0068379 97.602 By MS/MS 6 0 1 1 767630 0 0 767630 5298 1787 5516 22161 18621 18621 1 0 0 114850 HEVININLK FAERTRLVLKAKGIRHEVININLKNKPEWF KAKGIRHEVININLKNKPEWFFKKNPFGLV R H E L K N 0 0 2 0 0 0 1 0 1 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1078.6135 P78417 P78417 49 57 GSTO1 Glutathione S-transferase omega-1 yes yes 2 0.0087301 90.37 By MS/MS 10 0 1 1 1417700 0 0 1417700 5299 1088 5517 22162 18622 18622 1 0 0 3100600 HEYVLAVR QRKDYTALTKFLPPKHEYVLAVRMTSIQCK TKFLPPKHEYVLAVRMTSIQCKLYQYYLDH K H E V R M 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 8 0 985.53451 P46100 P46100 1831 1838 ATRX Transcriptional regulator ATRX yes yes 2 0.0013404 117.16 By MS/MS 1.5 0.5 1 1 2 8146800 0 0 8146800 5300 825 5518 22163;22164 18623 18623 1 0 0 1772900 HFALMQR SQEDCEGSSLPAAFKHFALMQRDSWVDIFR SSLPAAFKHFALMQRDSWVDIFRLLFWGGS K H F Q R D 1 1 0 0 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 0 7 0 901.45924 CON__Q3ZBS7 CON__Q3ZBS7 308 314 yes yes 2 0.00021534 154.91 By MS/MS By MS/MS By MS/MS 5.23 2.68 2 1 3 4 3 3 2 1 3 9 4 9 762400000 406530000 24207000 331660000 + 5301 88 5519;5520 22165;22166;22167;22168;22169;22170;22171;22172;22173;22174;22175;22176;22177;22178;22179;22180;22181;22182;22183;22184;22185;22186 18624;18625;18626;18627;18628;18629;18630;18631;18632;18633;18634;18635;18636;18637;18638;18639;18640;18641 18625 18 462140000 8452400 100800000 HFDFDLEDFKGNSK PALLRSLFTVGALCRHFDFDLEDFKGNSKV RHFDFDLEDFKGNSKVNIKDKVLELLMYFT R H F S K V 0 0 1 3 0 0 1 1 1 0 1 2 0 3 0 1 0 0 0 0 0 0 14 1 1697.7686 Q6KC79 Q6KC79 2153 2166 NIPBL Nipped-B-like protein yes yes 3 5.0031E-06 95.659 By MS/MS 1 0 1 1 0 0 0 0 5302 1480 5521 22187 18642 18642 1 0 0 0 HFDQFWSAAK FFPFIILDAINDRVRHFDQFWSAAKTKGFE NDRVRHFDQFWSAAKTKGFEVYLAEMSADN R H F A K T 2 0 0 1 0 1 0 0 1 0 0 1 0 2 0 1 0 1 0 0 0 0 10 0 1235.5724 P49750 P49750 1940 1949 YLPM1 YLP motif-containing protein 1 yes yes 2 0.00029744 123.75 By MS/MS 1 0 1 1 13551000 0 0 13551000 5303 865 5522 22188 18643 18643 1 0 0 2919900 HFEATDILVSK KIEPIPGESPKMFGRHFEATDILVSKISRQ MFGRHFEATDILVSKISRQSIDALKDWFRD R H F S K I 1 0 0 1 0 0 1 0 1 1 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1258.6558 O60841 O60841 1175 1185 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.00099547 114.4 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 48884000 0 0 48884000 5304 236 5523 22189;22190 18644;18645 18645 2 0 0 10533000 HFELGGDK PNCRSKRMLAIKRCKHFELGGDKKRKGQVI LAIKRCKHFELGGDKKRKGQVIQF______ K H F D K K 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 901.42938 Q969Q0;P83881 Q969Q0 90 97 RPL36AL;RPL36A 60S ribosomal protein L36a-like;60S ribosomal protein L36a yes no 2 0.00078401 124.98 By matching By MS/MS 7.33 0.471 2 1 1 2 20965000 0 422260 20542000 5305 1108 5524 22191;22192;22193 18646;18647 18646 2 0 242470 3444000 HFLEAIENNK GEAEKKKPKTQIVCKHFLEAIENNKYGWFW QIVCKHFLEAIENNKYGWFWVCPGGGDICM K H F N K Y 1 0 2 0 0 0 2 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1213.6091 Q8WU90 Q8WU90 182 191 ZC3H15 Zinc finger CCCH domain-containing protein 15 yes yes 2 2.0108E-05 110.55 By MS/MS 6 0 1 1 0 0 0 0 5306 1671 5525 22194 18648 18648 1 0 0 0 HFLQQATQVNAWDR SLINKWSLELEDQERHFLQQATQVNAWDRT RHFLQQATQVNAWDRTLIENGEKITSLHRE R H F D R T 2 1 1 1 0 3 0 0 1 0 1 0 0 1 0 0 1 1 0 1 0 0 14 0 1712.8383 P37198 P37198 350 363 NUP62 Nuclear pore glycoprotein p62 yes yes 2 3.4285E-07 167.2 By MS/MS 3 0 1 1 11894000 0 0 11894000 5307 767 5526 22195 18649 18649 1 0 0 2306800 HFLVPASR VVDCSCRLCRKKQHRHFLVPASRFTLLQGA CRKKQHRHFLVPASRFTLLQGAESIVTYRS R H F S R F 1 1 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 0 1 0 0 8 0 925.51339 P0DPI3;A0A0U1RR11;A0A0U1RRI6 P0DPI3 169 176 yes no 2 0.00028668 132.96 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 63792000 0 10487000 53305000 5308 6 5527 22196;22197;22198;22199 18650;18651;18652 18650 3 0 3630100 8006500 HFNAPSHIR FNPFVTSDRSKNRKRHFNAPSHIRRKIMSS SKNRKRHFNAPSHIRRKIMSSPLSKELRQK R H F I R R 1 1 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 9 0 1077.5468 P61254 P61254 18 26 RPL26 60S ribosomal protein L26 yes yes 2 0.00056394 126.62 By MS/MS By MS/MS 7 0 2 1 1 38388000 0 2345300 36042000 5309 989 5528 22200;22201 18653;18654 18654 2 0 1346700 6395500 HFNAPSHIRR FNPFVTSDRSKNRKRHFNAPSHIRRKIMSS KNRKRHFNAPSHIRRKIMSSPLSKELRQKY R H F R R K 1 2 1 0 0 0 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 0 10 1 1233.6479 P61254 P61254 18 27 RPL26 60S ribosomal protein L26 yes yes 3 0.060642 41.399 By MS/MS 7 0 1 1 1969400 0 1969400 0 5310 989 5529 22202 18655 18655 1 0 1130800 0 HFNSMSGPATLR PKTYGESMLYLDGQRHFNSMSGPATLRKDY GQRHFNSMSGPATLRKDYLVEP________ R H F L R K 1 1 1 0 0 0 0 1 1 0 1 0 1 1 1 2 1 0 0 0 0 0 12 0 1316.6296 Q9Y305 Q9Y305 421 432 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2;3 7.3577E-08 164.97 By matching By MS/MS By MS/MS 4.5 0.707 1 2 5 1 4 3 86557000 6442100 27387000 52729000 5311 2256 5530;5531 22203;22204;22205;22206;22207;22208;22209;22210 18656;18657;18658;18659;18660 18657 729 5 7432700 7337400 7354700 HFSIHPDTGVITTTTPFLDR RLKYKILQQIPDHPKHFSIHPDTGVITTTT PDTGVITTTTPFLDREKCDTYQLIMEVRDM K H F D R E 0 1 0 2 0 0 0 1 2 2 1 0 0 2 2 1 5 0 0 1 0 0 20 0 2254.1382 Q08554 Q08554 293 312 DSC1 Desmocollin-1 yes yes 3 5.6765E-15 155.11 By MS/MS 8 0 1 1 5335300 5335300 0 0 5312 1185 5532 22211 18661 18661 1 4580500 0 0 HFSTEDGIFQGQR GETQMLVGCADRTVKHFSTEDGIFQGQRHC VKHFSTEDGIFQGQRHCPGGEGMFRGLAQA K H F Q R H 0 1 0 1 0 2 1 2 1 1 0 0 0 2 0 1 1 0 0 0 0 0 13 0 1520.7008 Q6RFH5 Q6RFH5 69 81 WDR74 WD repeat-containing protein 74 yes yes 2 5.5629E-14 185.27 By MS/MS 5 0 1 1 10638000 0 0 10638000 5313 1499 5533 22212 18662 18662 1 0 0 1483800 HFTEDIQTR KVKIADLGNACWVHKHFTEDIQTRQYRSLE ACWVHKHFTEDIQTRQYRSLEVLIGSGYNT K H F T R Q 0 1 0 1 0 1 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 9 0 1145.5465 Q96SB4;Q9UPE1;P78362 Q96SB4 507 515 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal yes no 2 0.00063974 128.69 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 14288000 0 2155200 12132000 5314 1832 5534 22213;22214;22215 18663;18664 18664 2 0 970530 2381100 HFTIDDFEIGRPLGK KVMENSSGTPDILTRHFTIDDFEIGRPLGK HFTIDDFEIGRPLGKGKFGNVYLAREKKSH R H F G K G 0 1 0 2 0 0 1 2 1 2 1 1 0 2 1 0 1 0 0 0 0 0 15 1 1743.8944 Q96GD4 Q96GD4 71 85 AURKB Aurora kinase B yes yes 3 9.7827E-05 138.21 By matching By MS/MS 6 0 2 1 1 18171000 0 1103500 17067000 5315 1790 5535 22216;22217 18665 18665 1 0 381980 2553400 HFTILDAPGHK KTVEVGRAYFETERKHFTILDAPGHKSFVP TERKHFTILDAPGHKSFVPNMIGGASQADL K H F H K S 1 0 0 1 0 0 0 1 2 1 1 1 0 1 1 0 1 0 0 0 0 0 11 0 1234.6459 P15170;Q8IYD1 Q8IYD1 282 292 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B no no 3 0.0020393 89.171 By MS/MS 3 0 1 1 4621800 0 4621800 0 5316 568;1593 5536 22218 18666 18666 1 0 1970300 0 HFTQALSTVTPR LALEEDIQANLIMKRHFTQALSTVTPRIPE MKRHFTQALSTVTPRIPESLRRFYEDYQEK R H F P R I 1 1 0 0 0 1 0 0 1 0 1 0 0 1 1 1 3 0 0 1 0 0 12 0 1356.715 Q8NB90 Q8NB90 861 872 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.0016471 110.93 By MS/MS 2 0 1 1 5700800 0 0 5700800 5317 1624 5537 22219 18667 18667 1 0 0 1288300 HFVDSHHQKPVNAIIEHVR SHTIRDLKYTIENPRHFVDSHHQKPVNAII SHHQKPVNAIIEHVRDGSVVRALLLPDYYL R H F V R D 1 1 1 1 0 1 1 0 4 2 0 1 0 1 1 1 0 0 0 3 0 0 19 1 2262.177 Q7KZF4 Q7KZF4 185 203 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 5 3.2467E-06 99.891 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 106540000 0 16217000 90323000 5318 1518 5538 22220;22221;22222 18668;18669;18670 18669 3 0 7302500 20345000 HFVGILNK NNFGTGALKCNTLCRHFVGILNKTSGQMEV KCNTLCRHFVGILNKTSGQMEVYDAELFNM R H F N K T 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 926.53379 Q9GZS1 Q9GZS1 87 94 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 2 0.043728 96.048 By MS/MS 5 0 1 1 5309800 0 5309800 0 5319 1953 5539 22223 18671 18671 0 0 1368700 0 HFYTFTNEHHR PVYKRIRDVTNNQEKHFYTFTNEHHRETYV NQEKHFYTFTNEHHRETYVEQEQGENANDR K H F H R E 0 1 1 0 0 0 1 0 3 0 0 0 0 2 0 0 2 0 1 0 0 0 11 0 1487.6694 Q9Y2L1 Q9Y2L1 119 129 DIS3 Exosome complex exonuclease RRP44 yes yes 3 0.0012121 97.813 By MS/MS 2 0 1 1 1630600 0 0 1630600 5320 2242 5540 22224 18672 18672 1 0 0 368490 HFYWYLTNEGIQYLR SLKSRGYVKEQFAWRHFYWYLTNEGIQYLR HFYWYLTNEGIQYLRDYLHLPPEIVPATLR R H F L R D 0 1 1 0 0 1 1 1 1 1 2 0 0 1 0 0 1 1 3 0 0 0 15 0 2001.9737 P46783 P46783 66 80 RPS10 40S ribosomal protein S10 yes yes 2;3 5.741E-128 279.62 By MS/MS 7.67 0.471 1 2 3 40745000 0 0 40745000 5321 833 5541 22225;22226;22227 18673;18674;18675 18674 3 0 0 6377800 HGAEVIDTPVFELK VREKVFDVIIRCFKRHGAEVIDTPVFELKE RHGAEVIDTPVFELKETLMGKYGEDSKLIY R H G L K E 1 0 0 1 0 0 2 1 1 1 1 1 0 1 1 0 1 0 0 2 0 0 14 0 1553.809 P12081 P12081 87 100 HARS Histidine--tRNA ligase, cytoplasmic yes yes 2 0.00039942 126.88 By MS/MS 4 0 1 1 9289500 0 0 9289500 5322 532 5542 22228 18676 18676 1 0 0 1517300 HGDEIITSTTSNYETQTFSSK EQSQLTATQTRTVNKHGDEIITSTTSNYET TSTTSNYETQTFSSKTEWRVRAISAANLHL K H G S K T 0 0 1 1 0 1 2 1 1 2 0 1 0 1 0 4 5 0 1 0 0 0 21 0 2345.0659 Q6P2Q9 Q6P2Q9 2050 2070 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 0 472.27 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 42018000 0 17226000 24792000 5323 1490 5543 22229;22230;22231;22232 18677;18678;18679;18680 18679 4 0 8419800 5384000 HGDLLLLPALR LGAEERRALEREQARHGDLLLLPALRDAYE EQARHGDLLLLPALRDAYENLTAKVLAMLA R H G L R D 1 1 0 1 0 0 0 1 1 0 5 0 0 0 1 0 0 0 0 0 0 0 11 0 1216.7292 Q96L58 Q96L58 116 126 B3GALT6 Beta-1,3-galactosyltransferase 6 yes yes 2 0.00061867 118.26 By MS/MS 6 0 1 1 1647000 0 0 1647000 5324 1807 5544 22233 18681 18681 1 0 0 246410 HGDLPDIQIK KMKQDAQVVLYRSYRHGDLPDIQIKHSSLI YRSYRHGDLPDIQIKHSSLITPLQAVAQRD R H G I K H 0 0 0 2 0 1 0 1 1 2 1 1 0 0 1 0 0 0 0 0 0 0 10 0 1134.6033 P78527 P78527 2777 2786 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 5.3248E-08 163.32 By MS/MS 1 0 1 1 29275000 0 0 29275000 5325 1089 5545 22234 18682 18682 1 0 0 6307900 HGEIDYEAIVK ARLDILKIHAGPITKHGEIDYEAIVKLSDG PITKHGEIDYEAIVKLSDGFNGADLRNVCT K H G V K L 1 0 0 1 0 0 2 1 1 2 0 1 0 0 0 0 0 0 1 1 0 0 11 0 1272.635 P62333 P62333 323 333 PSMC6 26S protease regulatory subunit 10B yes yes 2 0.0011259 100.76 By MS/MS 5 0 1 1 7319700 0 0 7319700 5326 1025 5546 22235 18683 18683 0 0 0 1021000 HGESAWNLENR ______________________________ VLIRHGESAWNLENRFSGWYDADLSPAGHE R H G N R F 1 1 2 0 0 0 2 1 1 0 1 0 0 0 0 1 0 1 0 0 0 0 11 0 1311.5956 P18669 P18669 11 21 PGAM1 Phosphoglycerate mutase 1 yes yes 2 1.172E-35 209.73 By MS/MS 7 0 1 1 7594400 0 0 7594400 5327 598 5547 22236 18684 18684 1 0 0 1347600 HGEVCPAGWKPGSDTIKPDVQK DETLRLVQAFQFTDKHGEVCPAGWKPGSDT GWKPGSDTIKPDVQKSKEYFSKQK______ K H G Q K S 1 0 0 2 1 1 1 3 1 1 0 3 0 0 3 1 1 1 0 2 0 0 22 2 2405.1798 Q06830 Q06830 169 190 PRDX1 Peroxiredoxin-1 yes yes 4 0.0027437 54.15 By MS/MS 7 0 1 1 25248000 0 0 25248000 5328 1173 5548 22237 18685 18685 1 0 0 4480200 HGFEAASIKEER ADWTAKKLVWIPSERHGFEAASIKEERGDE SERHGFEAASIKEERGDEVMVELAENGKKA R H G E R G 2 1 0 0 0 0 3 1 1 1 0 1 0 1 0 1 0 0 0 0 0 0 12 1 1372.6735 P35580 P35580 43 54 MYH10 Myosin-10 yes yes 2;3 2.0733E-43 186.97 By MS/MS By MS/MS 1 0 3 1 2 44545000 0 16740000 27804000 5329 753 5549 22238;22239;22240 18686;18687;18688 18688 3 0 8182400 5990900 HGFLEEFITPIVK LLINFIHHNWPSLLKHGFLEEFITPIVKAS LKHGFLEEFITPIVKASKNKQELSFYSIPE K H G V K A 0 0 0 0 0 0 2 1 1 2 1 1 0 2 1 0 1 0 0 1 0 0 13 0 1528.829 Q02880 Q02880 588 600 TOP2B DNA topoisomerase 2-beta yes yes 2;3 0.00046158 121.83 By matching By MS/MS 1.4 0.49 3 2 1 4 30716000 0 429630 30286000 5330 1150 5550 22241;22242;22243;22244;22245 18689;18690;18691 18690 3 0 210000 6639600 HGGGGGGFGGGGFGSR GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS GGGGGGFGGGGFGSRSLVGLGGTKSISISV R H G S R S 0 1 0 0 0 0 0 11 1 0 0 0 0 2 0 1 0 0 0 0 0 0 16 0 1319.5755 CON__P35908;CON__P35908v2;P35908 CON__P35908 46 61 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 0 298.58 By MS/MS By MS/MS By MS/MS 5.44 2.92 6 5 5 5 5 6 6 3 5 6 21 12 19 10199000000 8357700000 203560000 1637600000 + 5331 65;66 5551 22246;22247;22248;22249;22250;22251;22252;22253;22254;22255;22256;22257;22258;22259;22260;22261;22262;22263;22264;22265;22266;22267;22268;22269;22270;22271;22272;22273;22274;22275;22276;22277;22278;22279;22280;22281;22282;22283;22284;22285;22286;22287;22288;22289;22290;22291;22292;22293;22294;22295;22296;22297 18692;18693;18694;18695;18696;18697;18698;18699;18700;18701;18702;18703;18704;18705;18706;18707;18708;18709;18710;18711;18712;18713;18714;18715;18716;18717;18718;18719;18720;18721;18722;18723;18724;18725;18726;18727;18728;18729;18730;18731;18732;18733;18734;18735;18736;18737;18738;18739;18740;18741;18742 18694 51 8928500000 185620000 975600000 HGGGTESLFFDK KLLNLKDSSMADASKHGGGTESLFFDKVRK ASKHGGGTESLFFDKVRKALRSAEAYENFL K H G D K V 0 0 0 1 0 0 1 3 1 0 1 1 0 2 0 1 1 0 0 0 0 0 12 0 1293.599 Q96ST3 Q96ST3 458 469 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.010489 93.556 By MS/MS 1.5 0.5 1 1 2 8671700 0 0 8671700 5332 1836 5552 22298;22299 18743 18743 1 0 0 1910600 HGGTIPIVPTAEFQDR LLMSVQESLERKFGKHGGTIPIVPTAEFQD GGTIPIVPTAEFQDRISGASEKDIVHSGLA K H G D R I 1 1 0 1 0 1 1 2 1 2 0 0 0 1 2 0 2 0 0 1 0 0 16 0 1736.8846 P00367 P00367 481 496 GLUD1 Glutamate dehydrogenase 1, mitochondrial yes yes 2 5.9445E-05 143.42 By MS/MS 4 0 1 1 6556900 0 0 6556900 5333 357 5553 22300 18744 18744 1 0 0 1071000 HGHLCPIDTGLIEK ALPQHKLTCFSVYCKHGHLCPIDTGLIEKN KHGHLCPIDTGLIEKNIELFFSGSAKPIYD K H G E K N 0 0 0 1 1 0 1 2 2 2 2 1 0 0 1 0 1 0 0 0 0 0 14 0 1588.8032 P26358 P26358 416 429 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.067412 35.891 By MS/MS 1.5 0.5 1 1 2 13701000 0 0 13701000 5334 667 5554 22301;22302 18745 18745 1 0 0 2998100 HGKNPVMELNEK FPSDATAEQGPILTKHGKNPVMELNEKRRG LTKHGKNPVMELNEKRRGLKYELISETGGS K H G E K R 0 0 2 0 0 0 2 1 1 0 1 2 1 0 1 0 0 0 0 1 0 0 12 1 1394.6976 Q12906 Q12906 524 535 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 0.047712 51.135 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 9849500 0 6286900 3562700 5335 1211 5555 22303;22304;22305 18746;18747 18746 2 0 2831100 787160 HGKPTDSTPATWK ASQKKLMIKQGLLDKHGKPTDSTPATWKQE DKHGKPTDSTPATWKQEYVDYSESAKKEVV K H G W K Q 1 0 0 1 0 0 0 1 1 0 0 2 0 0 2 1 3 1 0 0 0 0 13 1 1424.7048 O60832 O60832 401 413 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 3 0.010909 69.456 By MS/MS 4 0 1 1 6251500 0 6251500 0 5336 235 5556 22306 18748 18748 1 0 2074600 0 HGLEVSEMAVSELPGNPNAVWTVR VACGRGPRSSLRVLRHGLEVSEMAVSELPG VSELPGNPNAVWTVRRHIEDEFDAYIIVSF R H G V R R 2 1 2 0 0 0 3 2 1 0 2 0 1 0 2 2 1 1 0 4 0 0 24 0 2591.2802 Q15393 Q15393 440 463 SF3B3 Splicing factor 3B subunit 3 yes yes 3 2.1386E-20 123.14 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 1 2 17437000 1320800 3958300 12158000 5337 1361 5557 22307;22308;22309;22310 18749;18750;18751 18751 2 1591400 1782500 2688500 HGLGYSLLER PRQLGPVLRSPLTQKHGLGYSLLERLLTYN PLTQKHGLGYSLLERLLTYNSLYKKGPDGY K H G E R L 0 1 0 0 0 0 1 2 1 0 3 0 0 0 0 1 0 0 1 0 0 0 10 0 1143.6037 Q9HCE1 Q9HCE1 696 705 MOV10 Putative helicase MOV-10 yes yes 2 0.012506 87.258 By MS/MS 2 0 1 1 6380800 0 6380800 0 5338 2011 5558 22311 18752 18752 1 0 2873400 0 HGLINFGIYK SDTVLVHRVHSYLERHGLINFGIYKRIKPL SYLERHGLINFGIYKRIKPLPTKKTGKVII R H G Y K R 0 0 1 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 1 0 0 0 10 0 1160.6342 O60341 O60341 259 268 KDM1A Lysine-specific histone demethylase 1A yes yes 2 0.0018594 107.66 By MS/MS 1.5 0.5 1 1 2 16886000 0 0 16886000 5339 226 5559 22312;22313 18753 18753 1 0 0 3799400 HGLLVPNNTTDQELQHIR IAGCRIIGRMCVGNRHGLLVPNNTTDQELQ LVPNNTTDQELQHIRNSLPDTVQIRRVEER R H G I R N 0 1 2 1 0 2 1 1 2 1 3 0 0 0 1 0 2 0 0 1 0 0 18 0 2084.0763 P56537 P56537 68 85 EIF6 Eukaryotic translation initiation factor 6 yes yes 3;4 9.9784E-32 204.52 By MS/MS By MS/MS By MS/MS 5.17 2.61 1 1 4 1 3 2 166870000 1763100 56490000 108620000 5340 951 5560 22314;22315;22316;22317;22318;22319 18754;18755;18756;18757;18758;18759 18758 5 1763100 32155000 19273000 HGLVPFAFVR FYKYGRIREIELKNRHGLVPFAFVRFEDPR ELKNRHGLVPFAFVRFEDPRDAEDAIYGRN R H G V R F 1 1 0 0 0 0 0 1 1 0 1 0 0 2 1 0 0 0 0 2 0 0 10 0 1141.6396 Q13242 Q13242 49 58 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 1.3961E-07 162.31 By MS/MS By MS/MS By MS/MS 6.83 0.687 2 3 1 1 2 3 247330000 3742600 68694000 174900000 5341 1232 5561 22320;22321;22322;22323;22324;22325 18760;18761;18762;18763;18764;18765;18766 18762 7 8066100 37517000 30151000 HGNQYIQVNEPWK VRIRDALRSILTISRHGNQYIQVNEPWKRI SRHGNQYIQVNEPWKRIKGSEADRQRAGTV R H G W K R 0 0 2 0 0 2 1 1 1 1 0 1 0 0 1 0 0 1 1 1 0 0 13 0 1611.7794 P56192 P56192 714 726 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 2.4422E-46 163.84 By MS/MS 2 0 1 1 0 0 0 0 5342 949 5562 22326 18767 18767 1 0 0 0 HGSGSGHSSSYGQHGSGSGWSSSSGR GRHGAGSGQSPSRGRHGSGSGHSSSYGQHG GQHGSGSGWSSSSGRHGSGSGQSSGFGHHE R H G G R H 0 1 0 0 0 1 0 8 3 0 0 0 0 0 0 11 0 1 1 0 0 0 26 0 2476.0137 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1365 1390 HRNR Hornerin yes no 3;4;5 2.9244E-25 122.34 By MS/MS By MS/MS 5.28 2.89 4 2 2 2 2 3 4 2 2 2 3 22 101090000 0 4228200 96862000 + 5343 96 5563 22327;22328;22329;22330;22331;22332;22333;22334;22335;22336;22337;22338;22339;22340;22341;22342;22343;22344;22345;22346;22347;22348;22349;22350;22351 18768;18769;18770;18771;18772;18773;18774;18775;18776;18777;18778;18779;18780;18781;18782;18783;18784;18785;18786;18787;18788;18789;18790;18791 18772 23 0 2170000 41051000 HGSGSGQSSGFGHHESSSWQSSGYTQHGSGSGHSSSYEQHGSR GQHGSGSGWSSSSGRHGSGSGQSSGFGHHE SGSGHSSSYEQHGSRSGQSSRGEQHGSSSG R H G S R S 0 1 0 0 0 4 2 10 6 0 0 0 0 1 0 15 1 1 2 0 0 0 43 0 4402.8018 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1861 1903 HRNR Hornerin yes no 5;6 3.4149E-24 78.372 By MS/MS By MS/MS 5.71 3.15 1 1 2 3 3 4 40698000 16666000 0 24033000 + 5344 96 5564 22352;22353;22354;22355;22356;22357;22358 18792;18793;18794;18795;18796;18797;18798 18797 7 10060000 0 5115900 HGSGSGQSSSYGPYGSGSGWSSSR HGSGSGQSPSPSRGRHGSGSGQSSSYGPYG SYGPYGSGSGWSSSRGPYESGSGHSSGLGH R H G S R G 0 1 0 0 0 1 0 7 1 0 0 0 0 0 1 10 0 1 2 0 0 0 24 0 2317.9584 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1954 1977 HRNR Hornerin yes no 3 2.2774E-22 153.88 By MS/MS By matching 6.57 3.66 2 1 1 1 2 5 2 52658000 41486000 0 11172000 + 5345 96 5565 22359;22360;22361;22362;22363;22364;22365 18799;18800 18799 2 42398000 0 9269200 HGSGSGQSSSYGPYR HGSGSGQSPSPSRGRHGSGSGQSSSYGPYR HGSGSGQSSSYGPYRSGSGWSSSRGPYESG R H G Y R S 0 1 0 0 0 1 0 4 1 0 0 0 0 0 1 5 0 0 2 0 0 0 15 0 1525.6546 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1014 1028 HRNR Hornerin yes no 2;3 0.001664 77.192 By MS/MS 3.2 2.99 2 1 1 1 5 9266700 9266700 0 0 + 5346 96 5566 22366;22367;22368;22369;22370 18801;18802;18803 18803 3 8375200 0 0 HGSGSGQSSSYSPYGSGSGWSSSR HGSGSGQSPSPSRGRHGSGSGQSSSYSPYG SYSPYGSGSGWSSSRGPYESGSSHSSGLGH R H G S R G 0 1 0 0 0 1 0 6 1 0 0 0 0 0 1 11 0 1 2 0 0 0 24 0 2347.969 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 1484 1507 HRNR Hornerin yes no 3 5.7697E-30 178.45 By MS/MS By MS/MS 5.12 2.96 2 2 2 1 2 2 1 1 1 2 8 8 207770000 146260000 0 61514000 + 5347 96 5567 22371;22372;22373;22374;22375;22376;22377;22378;22379;22380;22381;22382;22383;22384;22385;22386 18804;18805;18806;18807;18808;18809;18810;18811;18812;18813;18814;18815 18815 12 146410000 0 28876000 HGSLGFLPR ______________________________ KFSAPRHGSLGFLPRKRSSRHRGKVKSFPK R H G P R K 0 1 0 0 0 0 0 2 1 0 2 0 0 1 1 1 0 0 0 0 0 0 9 0 982.53485 P39023 P39023 11 19 RPL3 60S ribosomal protein L3 yes yes 2 2.867E-23 186.09 By matching By MS/MS By MS/MS 4.46 3.15 3 1 2 2 2 1 2 1 7 5 387120000 2001100 201690000 183430000 5348 778 5568 22387;22388;22389;22390;22391;22392;22393;22394;22395;22396;22397;22398;22399 18816;18817;18818;18819;18820;18821;18822;18823;18824;18825;18826 18822 11 2001100 84511000 62153000 HGSYEDAVHSGALND IDDLIKLHPESKDDKHGSYEDAVHSGALND HGSYEDAVHSGALND_______________ K H G N D - 2 0 1 2 0 0 1 2 2 0 1 0 0 0 0 2 0 0 1 1 0 0 15 0 1570.6648 P17987 P17987 542 556 TCP1 T-complex protein 1 subunit alpha yes yes 2;3 1.5959E-172 298.84 By MS/MS By MS/MS 4 0 4 2 2 34571000 20909000 0 13662000 5349 591 5569 22400;22401;22402;22403 18827;18828;18829 18827 3 16313000 0 2231400 HGVDVEVQGPHEAR LAKIFYDRAEYLHGKHGVDVEVQGPHEARD KHGVDVEVQGPHEARDGQLLIRLDLNRKEV K H G A R D 1 1 0 1 0 1 2 2 2 0 0 0 0 0 1 0 0 0 0 3 0 0 14 0 1528.7383 Q9HCE1 Q9HCE1 122 135 MOV10 Putative helicase MOV-10 yes yes 3 0.0013984 84.566 By MS/MS 2 0 1 1 5202700 0 5202700 0 5350 2011 5570 22404 18830 18830 1 0 2342800 0 HGVHMMVATPGR CIGGMSVKEQMETIRHGVHMMVATPGRLMD TIRHGVHMMVATPGRLMDLLQKKMVSLDIC R H G G R L 1 1 0 0 0 0 0 2 2 0 0 0 2 0 1 0 1 0 0 2 0 0 12 0 1291.6278 Q9UJV9 Q9UJV9 312 323 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.0033696 85.813 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 14974000 0 0 14974000 5351 2171 5571 22405;22406;22407;22408 18831;18832 18832 2 0 0 2691200 HGVIVAADSR IEMLHGTTTLAFKFRHGVIVAADSRATAGA AFKFRHGVIVAADSRATAGAYIASQTVKKV R H G S R A 2 1 0 1 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 2 0 0 10 0 1023.5461 P28074 P28074 69 78 PSMB5 Proteasome subunit beta type-5 yes yes 2 0.00068166 114.89 By MS/MS 8 0.816 1 1 1 3 3002000 0 0 3002000 5352 686 5572 22409;22410;22411 18833 18833 1 0 0 548340 HGVQELEIELQSQLSK GQEVQSSAKEVTQLRHGVQELEIELQSQLS GVQELEIELQSQLSKKAALEKSLEDTKNRY R H G S K K 0 0 0 0 0 3 3 1 1 1 3 1 0 0 0 2 0 0 0 1 0 0 16 0 1836.9581 P35527;CON__P35527 P35527 375 390 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 0 435.72 By MS/MS By MS/MS By MS/MS 5.02 2.73 5 5 6 7 6 3 2 6 5 2 21 6 20 3012000000 1565300000 27729000 1419000000 + 5353 750 5573 22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427;22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440;22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454;22455;22456;22457;22458 18834;18835;18836;18837;18838;18839;18840;18841;18842;18843;18844;18845;18846;18847;18848;18849;18850;18851;18852;18853;18854;18855;18856;18857;18858;18859;18860;18861;18862;18863;18864;18865;18866;18867;18868;18869;18870;18871;18872;18873;18874;18875;18876;18877;18878;18879;18880;18881;18882;18883;18884;18885;18886;18887;18888;18889 18840 56 1242100000 11556000 271020000 HGVQELEIELQSQLSKK GQEVQSSAKEVTQLRHGVQELEIELQSQLS VQELEIELQSQLSKKAALEKSLEDTKNRYC R H G K K A 0 0 0 0 0 3 3 1 1 1 3 2 0 0 0 2 0 0 0 1 0 0 17 1 1965.0531 P35527;CON__P35527 P35527 375 391 KRT9 Keratin, type I cytoskeletal 9 yes no 3 4.2369E-28 201.75 By MS/MS 6.62 2.18 1 1 1 1 2 2 8 198420000 198420000 0 0 + 5354 750 5574 22459;22460;22461;22462;22463;22464;22465;22466 18890;18891;18892;18893;18894;18895 18891 6 155930000 0 0 HGVQELEIELQSQLSKKAALEK GQEVQSSAKEVTQLRHGVQELEIELQSQLS IELQSQLSKKAALEKSLEDTKNRYCGQLQM R H G E K S 2 0 0 0 0 3 4 1 1 1 4 3 0 0 0 2 0 0 0 1 0 0 22 2 2477.349 P35527;CON__P35527 P35527 375 396 KRT9 Keratin, type I cytoskeletal 9 yes no 4 0.00062676 65.318 By MS/MS By MS/MS 7.33 1.25 1 1 1 1 2 19253000 4674100 0 14579000 + 5355 750 5575 22467;22468;22469 18896;18897 18897 1 2623600 0 2343100 HGVVPLATYMR KRRGTRYMFSRPFRKHGVVPLATYMRIYKK PFRKHGVVPLATYMRIYKKGDIVDIKGMGT K H G M R I 1 1 0 0 0 0 0 1 1 0 1 0 1 0 1 0 1 0 1 2 0 0 11 0 1242.6543 P46778 P46778 22 32 RPL21 60S ribosomal protein L21 yes yes 2;3 1.2206E-13 180.44 By matching By MS/MS By MS/MS 6.43 0.728 1 2 4 1 3 3 451250000 4491500 99864000 346890000 5356 829 5576 22470;22471;22472;22473;22474;22475;22476 18898;18899;18900;18901;18902;18903;18904;18905 18900 8 3598300 56324000 60856000 HGYEKPTPIQTQAIPAIMSGR VQCGISMKILNSLKKHGYEKPTPIQTQAIP TPIQTQAIPAIMSGRDLIGIAKTGSGKTIA K H G G R D 2 1 0 0 0 2 1 2 1 3 0 1 1 0 3 1 2 0 1 0 0 0 21 1 2294.1841 Q7L014 Q7L014 390 410 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 4 0.0014737 58.479 By MS/MS 2 0 1 1 5991500 0 0 5991500 5357 1520 5577 22477 18906 18906 1 0 0 1354000 HGYIGEFEIIDDHR PCSKVIVRFLTVMMKHGYIGEFEIIDDHRA KHGYIGEFEIIDDHRAGKIVVNLTGRLNKC K H G H R A 0 1 0 2 0 0 2 2 2 3 0 0 0 1 0 0 0 0 1 0 0 0 14 0 1699.7954 P62244 P62244 44 57 RPS15A 40S ribosomal protein S15a yes yes 2;3 0 406.03 By MS/MS By matching By MS/MS 8 0.756 2 3 2 2 1 4 151560000 14143000 1131600 136290000 5358 1009 5578 22478;22479;22480;22481;22482;22483;22484 18907;18908;18909;18910;18911 18910 5 10165000 649800 21936000 HGYNMEQALGMLFWHK SEAKLDEYIAIAKEKHGYNMEQALGMLFWH GYNMEQALGMLFWHKHNIEKSLADLPNFTP K H G H K H 1 0 1 0 0 1 1 2 2 0 2 1 2 1 0 0 0 1 1 0 0 0 16 0 1960.9076 Q9UKL0 Q9UKL0 160 175 RCOR1 REST corepressor 1 yes yes 3 0.021847 46.362 By MS/MS 3.5 0.5 1 1 2 7069600 0 0 7069600 5359 2180 5579 22485;22486 18912 18912 1 0 0 1239200 HHGPQTLYLPVTLSSIPVFQR PGQGEVWYDIQSYQKHHGPQTLYLPVTLSS LYLPVTLSSIPVFQRGGTIVPRWMRVRRSS K H H Q R G 0 1 0 0 0 2 0 1 2 1 3 0 0 1 3 2 2 0 1 2 0 0 21 0 2389.2906 Q14697 Q14697 785 805 GANAB Neutral alpha-glucosidase AB yes yes 4 7.3014E-07 96.379 By MS/MS 2.5 0.5 1 1 2 9011600 0 0 9011600 5360 1317 5580 22487;22488 18913;18914 18913 2 0 0 1976400 HHLGDDVVLFTTDGAHK ACDFDYLRFLQKRFRHHLGDDVVLFTTDGA LGDDVVLFTTDGAHKTFLKCGALQGLYTTV R H H H K T 1 0 0 3 0 0 0 2 3 0 2 1 0 1 0 0 2 0 0 2 0 0 17 0 1860.9119 P16278 P16278 209 225 GLB1 Beta-galactosidase yes yes 4 0.00081722 76.151 By MS/MS 3.5 0.5 1 1 2 12635000 0 0 12635000 5361 576 5581 22489;22490 18915;18916 18916 2 0 0 2186000 HHLQPENPGPGGAAPSLEQNR SESSLQKRRRKKKKKHHLQPENPGPGGAAP NPGPGGAAPSLEQNRGREPEASGLKALKAR K H H N R G 2 1 2 0 0 2 2 3 2 0 2 0 0 0 4 1 0 0 0 0 0 0 21 0 2205.0675 Q14684 Q14684 407 427 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 4 2.3213E-14 122.64 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 28612000 0 3347000 25265000 5362 1313 5582 22491;22492;22493 18917;18918;18919;18920 18920 4 0 1507200 5215800 HHYEQQQEDLAR QEESVDPDYWEKLLRHHYEQQQEDLARNLG LLRHHYEQQQEDLARNLGKGKRIRKQVNYN R H H A R N 1 1 0 1 0 3 2 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 12 0 1552.7019 Q14839;Q12873;Q8TDI0 Q14839 1320 1331 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 3 0.0010556 101.5 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 12343000 0 6325200 6017700 5363 1321;1662;1205 5583 22494;22495;22496;22497 18921;18922;18923 18921 3 0 3091600 1256700 HIADLAGNSEVILPVPAFNVINGGSHAGNK VCKAGAVEKGVPLYRHIADLAGNSEVILPV PAFNVINGGSHAGNKLAMQEFMILPVGAAN R H I N K L 4 0 4 1 0 0 1 4 2 3 2 1 0 1 2 2 0 0 0 3 0 0 30 0 3010.5625 P06733 P06733 133 162 ENO1 Alpha-enolase yes yes 3;4 1.0996E-33 119.35 By MS/MS By MS/MS 5 0 2 1 1 9686200 0 6415300 3271000 5364 448 5584 22498;22499 18924;18925 18924 1 0 1653700 456240 HIANYISGIQTIGHR YDLGKKKLLRKCENKHIANYISGIQTIGHR HIANYISGIQTIGHRVIVSDVQESFIWVRY K H I H R V 1 1 1 0 0 1 0 2 2 4 0 0 0 0 0 1 1 0 1 0 0 0 15 0 1678.8903 Q15393 Q15393 985 999 SF3B3 Splicing factor 3B subunit 3 yes yes 3 4.4205E-05 149.82 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 74529000 0 9550500 64978000 5365 1361 5585 22500;22501;22502;22503;22504 18926;18927;18928 18927 3 0 4300700 13736000 HIDFSLR VVNIPSFIVRLDSQKHIDFSLRSPYGGGRP IVRLDSQKHIDFSLRSPYGGGRPGRVKRKN K H I L R S 0 1 0 1 0 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 0 7 0 886.4661 P46781 P46781 156 162 RPS9 40S ribosomal protein S9 yes yes 2 5.9547E-26 202.71 By MS/MS By MS/MS 6.86 1.96 1 1 1 2 1 1 1 6 530850000 0 135570000 395270000 5366 831 5586 22505;22506;22507;22508;22509;22510;22511 18929;18930;18931 18931 3 0 77846000 75487000 HIDYFNNQIIVDLVEQQHK KQEQEEYQREGIPWKHIDYFNNQIIVDLVE FNNQIIVDLVEQQHKGIIAILDDACMNVGK K H I H K G 0 0 2 2 0 3 1 0 2 3 1 1 0 1 0 0 0 0 1 2 0 0 19 0 2352.1862 O94832 O94832 432 450 MYO1D Unconventional myosin-Id yes yes 3 1.2273E-09 126.25 By MS/MS 2 0 1 1 3094900 0 3094900 0 5367 299 5587 22512 18932 18932 1 0 1393700 0 HIEIFTDLSSR DVIQHETIGKKFEKRHIEIFTDLSSRFSKS FEKRHIEIFTDLSSRFSKSQLDIIIHSLKK R H I S R F 0 1 0 1 0 0 1 0 1 2 1 0 0 1 0 2 1 0 0 0 0 0 11 0 1316.6725 P13010 P13010 131 141 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 2.2557E-13 176.33 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 85004000 675590 0 84329000 5368 542 5588 22513;22514;22515;22516;22517 18933;18934;18935;18936 18936 3 814000 0 16956000 HIEILDQALSNAQAR MELAAVRTASEDHRRHIEILDQALSNAQAR HIEILDQALSNAQARVIKLEEELREKQAYV R H I A R V 3 1 1 1 0 2 1 0 1 2 2 0 0 0 0 1 0 0 0 0 0 0 15 0 1677.8798 Q8IY63 Q8IY63 577 591 AMOTL1 Angiomotin-like protein 1 yes yes 3 0.00090571 83.692 By MS/MS 2 0 1 1 4698000 0 0 4698000 5369 1589 5589 22518 18937 18937 1 0 0 1061600 HIFTIPGQAFVPKPEVDVGVVHFTPLIQPK RSRLSVMAQYLCNVRHIFTIPGQAFVPKPE VDVGVVHFTPLIQPKIEQPFKLVEKVVQNV R H I P K I 1 0 0 1 0 2 1 2 2 3 1 2 0 3 5 0 2 0 0 5 0 0 30 1 3309.8278 Q8WVM0 Q8WVM0 208 237 TFB1M Dimethyladenosine transferase 1, mitochondrial yes yes 4 0.0006574 41.734 By MS/MS 6 0 1 1 4751100 0 0 4751100 5370 1683 5590 22519 18938 18938 1 0 0 710820 HIGISFTPK SGNEEPCLLKRLPNRHIGISFTPKEVGEHV KRLPNRHIGISFTPKEVGEHVVSVRKSGKH R H I P K E 0 0 0 0 0 0 0 1 1 2 0 1 0 1 1 1 1 0 0 0 0 0 9 0 998.55492 Q14315 Q14315 2000 2008 FLNC Filamin-C yes yes 2 0.00040093 122.18 By MS/MS By matching 1.5 0.5 1 1 1 1 17600000 0 14765000 2834200 5371 1298 5591 22520;22521 18939 18939 1 0 7217100 640470 HIGKPLLGGPFSLTTHTGER VKKEKAEKLEKERQRHIGKPLLGGPFSLTT LLGGPFSLTTHTGERKTDKDYLGQWLLIYF R H I E R K 0 1 0 0 0 0 1 4 2 1 3 1 0 1 2 1 3 0 0 0 0 0 20 1 2117.1382 O75880 O75880 130 149 SCO1 Protein SCO1 homolog, mitochondrial yes yes 4 0.0052354 50.425 By MS/MS 7 0 1 1 11122000 0 0 11122000 5372 287 5592 22522 18940 18940 1 0 0 1973500 HIGLVYSGMGPDYR LYDERSVHKVEPITKHIGLVYSGMGPDYRV KHIGLVYSGMGPDYRVLVHRARKLAQQYYL K H I Y R V 0 1 0 1 0 0 0 3 1 1 1 0 1 0 1 1 0 0 2 1 0 0 14 0 1563.7504 P25787 P25787 71 84 PSMA2 Proteasome subunit alpha type-2 yes yes 3 0.0036294 74.537 By MS/MS 7 0 1 1 3432900 0 0 3432900 5373 662 5593 22523 18941 18941 1 0 0 609150 HIISHLFSQPK PQTIVELFFQEVARKHIISHLFSQPKAPLS VARKHIISHLFSQPKAPLSQTGLNWPEMIT K H I P K A 0 0 0 0 0 1 0 0 2 2 1 1 0 1 1 2 0 0 0 0 0 0 11 0 1305.7194 Q12769 Q12769 834 844 NUP160 Nuclear pore complex protein Nup160 yes yes 3 0.011363 70.942 By MS/MS 1.5 0.5 1 1 2 8467200 0 0 8467200 5374 1196 5594 22524;22525 18942 18942 1 0 0 1877600 HILANFK ERVKPFMTGAAEQIKHILANFKNYQFFIGE TGAAEQIKHILANFKNYQFFIGENMNPDGM K H I F K N 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 841.48102 P13693;Q56UQ5 P13693 124 130 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 2 0.0071694 124.94 By matching By MS/MS 7.33 0.471 2 1 1 2 55764000 0 4576500 51187000 5375 550 5595 22526;22527;22528 18943 18943 1 0 2627900 9019400 HILILQNK QTSEHLAAIEIMKLKHILILQNKIDLVKES IEIMKLKHILILQNKIDLVKESQAKEQYEQ K H I N K I 0 0 1 0 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 8 0 977.6022 P41091;Q2VIR3 P41091 184 191 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 5.7569E-14 182.31 By matching By MS/MS By MS/MS 4.67 0.745 3 2 1 1 2 3 221910000 3359600 51542000 167010000 5376 790 5596 22529;22530;22531;22532;22533;22534 18944;18945;18946;18947 18946 4 2621100 15619000 26053000 HILLAVANDEELNQLLK GNAARDNKKGRVTPRHILLAVANDEELNQL LLAVANDEELNQLLKGVTIASGGVLPNIHP R H I L K G 2 0 2 1 0 1 2 0 1 1 5 1 0 0 0 0 0 0 0 1 0 0 17 0 1932.068 Q9P0M6;O75367 O75367 80 96 H2AFY2;H2AFY Core histone macro-H2A.2;Core histone macro-H2A.1 no no 2;3 6.1504E-152 285.54 By MS/MS By MS/MS By MS/MS 4.67 2.03 2 2 2 2 6 3 2 2 2 3 16 732340000 34643000 27808000 669880000 5377 253;2117 5597 22535;22536;22537;22538;22539;22540;22541;22542;22543;22544;22545;22546;22547;22548;22549;22550;22551;22552;22553;22554;22555 18948;18949;18950;18951;18952;18953;18954;18955;18956;18957;18958;18959;18960;18961;18962;18963;18964;18965;18966;18967;18968;18969;18970;18971;18972;18973 18967 26 27753000 8006800 99676000 HILTTELR AETAHLRKELLIAAKHILTTELRNQFIPCM ELLIAAKHILTTELRNQFIPCMDKLFDESI K H I L R N 0 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 8 0 981.56073 Q9Y4A5 Q9Y4A5 337 344 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.013817 89.142 By MS/MS 1 0 1 1 8525400 0 0 8525400 5378 2285 5598 22556 18974 18974 1 0 0 1836900 HIMGQNVADYMR YDSESKEFNAEVHRKHIMGQNVADYMRYLM HRKHIMGQNVADYMRYLMEEDEDAYKKQFS K H I M R Y 1 1 1 1 0 1 0 1 1 1 0 0 2 0 0 0 0 0 1 1 0 0 12 0 1433.6544 P46777 P46777 198 209 RPL5 60S ribosomal protein L5 yes yes 2;3 4.7987E-12 179.42 By MS/MS By MS/MS By MS/MS 5.44 1.32 1 1 3 10 1 4 5 7 414120000 44604000 63863000 305650000 5379 828 5599;5600 22557;22558;22559;22560;22561;22562;22563;22564;22565;22566;22567;22568;22569;22570;22571;22572 18975;18976;18977;18978;18979;18980;18981;18982;18983;18984;18985 18983 404;405 11 40373000 21893000 46011000 HIMIDLGTGNNNK ELYDPCTVMFFFRNKHIMIDLGTGNNNKIN NKHIMIDLGTGNNNKINWAMEDKQEMVDII K H I N K I 0 0 3 1 0 0 0 2 1 2 1 1 1 0 0 0 1 0 0 0 0 0 13 0 1425.7034 P83876 P83876 89 101 TXNL4A Thioredoxin-like protein 4A yes yes 2 0.0045577 101.66 By MS/MS 9 0 1 1 8235000 0 0 8235000 5380 1107 5601 22573 18986 18986 1 0 0 2630600 HINDSAPEVR LPKSLLKPFCAALLKHINDSAPEVRDAAFE AALLKHINDSAPEVRDAAFEALGTALKVVG K H I V R D 1 1 1 1 0 0 1 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 10 0 1136.5574 Q14008 Q14008 447 456 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00015078 142.92 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 16502000 0 7317600 9183900 5381 1279 5602 22574;22575;22576;22577 18987;18988;18989;18990 18987 4 0 3490800 1998300 HINMDGTINVDDFK KTNVALMCMLREIGKHINMDGTINVDDFKI KHINMDGTINVDDFKIIYIAPMRSLVQEMV K H I F K I 0 0 2 3 0 0 0 1 1 2 0 1 1 1 0 0 1 0 0 1 0 0 14 0 1617.7457 O75643 O75643 524 537 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 3.3819E-06 163.71 By MS/MS By MS/MS 1.17 0.373 5 1 2 4 70867000 0 12257000 58610000 5382 277 5603;5604 22578;22579;22580;22581;22582;22583 18991;18992;18993;18994;18995 18994 107 5 0 5991100 12644000 HIPLAPGSDWR HICKDMSALVAARMRHIPLAPGSDWRDLPN ARMRHIPLAPGSDWRDLPNIEVRLSDGTMA R H I W R D 1 1 0 1 0 0 0 1 1 1 1 0 0 0 2 1 0 1 0 0 0 0 11 0 1247.6411 P26358 P26358 1427 1437 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2;3 0.0081328 94.85 By MS/MS 1.33 0.471 2 1 3 25992000 0 0 25992000 5383 667 5605 22584;22585;22586 18996;18997 18996 2 0 0 5615000 HIQDLNWQR HMIEHAQKELQKLRKHIQDLNWQRKNMQLT LQKLRKHIQDLNWQRKNMQLTAGSKLREME K H I Q R K 0 1 1 1 0 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 9 0 1208.6051 O75934 O75934 159 167 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 4.1399E-07 155.75 By MS/MS By MS/MS 7 0 2 1 1 38913000 0 17226000 21687000 5384 290 5606 22587;22588 18998;18999 18999 2 0 9891000 3848200 HITIFSPEGR ______________________________ AGFDRHITIFSPEGRLYQVEYAFKAINQGG R H I G R L 0 1 0 0 0 0 1 1 1 2 0 0 0 1 1 1 1 0 0 0 0 0 10 0 1155.6037 P60900 P60900 12 21 PSMA6 Proteasome subunit alpha type-6 yes yes 2 0.054288 71.708 By matching By MS/MS 6.33 0.471 2 1 1 2 12995000 0 1436900 11558000 5385 969 5607 22589;22590;22591 19000 19000 1 0 497400 1888900 HIVLSGGSTMYPGLPSR TIQAADIDTRSEFYKHIVLSGGSTMYPGLP VLSGGSTMYPGLPSRLERELKQLYLERVLK K H I S R L 0 1 0 0 0 0 0 3 1 1 2 0 1 0 2 3 1 0 1 1 0 0 17 0 1770.9087 P61160 P61160 300 316 ACTR2 Actin-related protein 2 yes yes 3 1.4047E-06 128.71 By MS/MS 5.5 0.5 1 1 2 15747000 0 15747000 0 5386 981 5608 22592;22593 19001;19002 19001 2 0 4357100 0 HIWITAAK RKVLNKARENIPTDRHIWITAAKLEEANGN ENIPTDRHIWITAAKLEEANGNTQMVEKII R H I A K L 2 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 1 1 0 0 0 0 8 0 938.53379 O94906 O94906 465 472 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00079438 124.83 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 56365000 0 5998900 50367000 5387 305 5609 22594;22595;22596;22597 19003;19004 19003 2 0 2557300 10894000 HIYYITGETK VSLKDYCTRMKENQKHIYYITGETKDQVAN KENQKHIYYITGETKDQVANSAFVERLRKH K H I T K D 0 0 0 0 0 0 1 1 1 2 0 1 0 0 0 0 2 0 2 0 0 0 10 0 1223.6186 P07900;Q58FG0 P07900 490 499 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 2 0.00042534 137.13 By MS/MS By MS/MS By MS/MS 3 0.632 1 3 1 1 1 3 73916000 17557000 5677200 50682000 5388 466 5610 22598;22599;22600;22601;22602 19005;19006;19007 19006 3 20257000 2420200 9963400 HKDVAEEIANYRPTLDTLHEQASALPQEHAESPDVR DVGHDEYSTQSLVKKHKDVAEEIANYRPTL ASALPQEHAESPDVRGRLSGIEERYKEVAE K H K V R G 5 2 1 3 0 2 5 0 3 1 3 1 0 0 3 2 2 0 1 2 0 0 36 2 4065.978 Q01082 Q01082 786 821 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 5 2.739E-05 44.641 By MS/MS 1 0 1 1 9322900 0 0 9322900 5389 1128 5611 22603 19008 19008 1 0 0 2008800 HKELAPYDENWFYTR KLKVPEWVDTVKLAKHKELAPYDENWFYTR HKELAPYDENWFYTRAASTARHLYLRGGAG K H K T R A 1 1 1 1 0 0 2 0 1 0 1 1 0 1 1 0 1 1 2 0 0 0 15 1 1967.9166 P39019 P39019 42 56 RPS19 40S ribosomal protein S19 yes yes 3 7.1241E-06 160.8 By MS/MS 8 0 1 1 14720000 0 0 14720000 5390 777 5612 22604 19009 19009 1 0 0 2256700 HKEPGSGSGGGVYWVDSQQK RCGDRLLVTKCGRLRHKEPGSGSGGGVYWV SGSGGGVYWVDSQQKRYVPVKGDHVIGIVT R H K Q K R 0 0 0 1 0 2 1 5 1 0 0 2 0 0 1 3 0 1 1 2 0 0 20 1 2101.9817 Q9NQT5 Q9NQT5 88 107 EXOSC3 Exosome complex component RRP40 yes yes 3 5.35E-06 90.755 By MS/MS 6 0 1 1 4703700 0 0 4703700 5391 2036 5613 22605 19010 19010 1 0 0 703720 HKPDFISLFK RQPEAVHLLDKILKKHKPDFISLFKNPPKN KILKKHKPDFISLFKNPPKNVQQHEKVQKA K H K F K N 0 0 0 1 0 0 0 0 1 1 1 2 0 2 1 1 0 0 0 0 0 0 10 1 1230.6761 Q92621 Q92621 46 55 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.063906 46.796 By MS/MS 1 0 1 1 6468700 0 0 6468700 5392 1714 5614 22606 19011 19011 1 0 0 1393800 HKPLLIDMNK SSWRDGRLFNAIIHRHKPLLIDMNKVYRQT AIIHRHKPLLIDMNKVYRQTNLENLDQAFS R H K N K V 0 0 1 1 0 0 0 0 1 1 2 2 1 0 1 0 0 0 0 0 0 0 10 1 1207.6747 Q15149 Q15149 337 346 PLEC Plectin yes yes 3 0.057289 49.189 By MS/MS 1 0 1 1 11762000 0 11762000 0 5393 1348 5615 22607 19012 19012 1 0 5749300 0 HLAAVEER TAAAAALAAAAVKAKHLAAVEERKIKSLVA AAAVKAKHLAAVEERKIKSLVALLVETQMK K H L E R K 2 1 0 0 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 8 0 923.48248 Q8TAQ2;Q92922 Q8TAQ2 875 882 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 0.066331 68.915 By MS/MS 3 0 1 1 706440 0 0 706440 5394 1653;1731 5616 22608 19013 19013 1 0 0 137020 HLAEQFAVGEIITDMAK RVKAAQAGRQSSAKRHLAEQFAVGEIITDM AEQFAVGEIITDMAKKEWKVGLPIGQGGFG R H L A K K 3 0 0 1 0 1 2 1 1 2 1 1 1 1 0 0 1 0 0 1 0 0 17 0 1871.9451 Q99986 Q99986 18 34 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2;3 1.025E-13 182.02 By MS/MS By MS/MS 4.33 0.745 1 2 3 1 5 60557000 0 3265800 57292000 5395 1871 5617 22609;22610;22611;22612;22613;22614 19014;19015;19016;19017 19016 3 0 841830 8534400 HLAFIDQLIEDK QLQRQREHYEATIQRHLAFIDQLIEDKKVL IQRHLAFIDQLIEDKKVLSEKCEAVVAELK R H L D K K 1 0 0 2 0 1 1 0 1 2 2 1 0 1 0 0 0 0 0 0 0 0 12 0 1440.7613 Q9UPN4 Q9UPN4 630 641 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.043437 74.849 By matching By MS/MS 1.5 0.5 1 1 1 1 6209000 0 1870400 4338600 5396 2215 5618 22615;22616 19018 19018 1 0 914250 980440 HLAFIDQLIEDKK QLQRQREHYEATIQRHLAFIDQLIEDKKVL QRHLAFIDQLIEDKKVLSEKCEAVVAELKQ R H L K K V 1 0 0 2 0 1 1 0 1 2 2 2 0 1 0 0 0 0 0 0 0 0 13 1 1568.8562 Q9UPN4 Q9UPN4 630 642 CEP131 Centrosomal protein of 131 kDa yes yes 3 0.0049346 75.618 By MS/MS 2 0 1 1 8185200 0 0 8185200 5397 2215 5619 22617 19019 19019 1 0 0 1849700 HLAGLGLTEAIDK SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK QKHLAGLGLTEAIDKNKADLSRMSGKKDLY K H L D K N 2 0 0 1 0 0 1 2 1 1 3 1 0 0 0 0 1 0 0 0 0 0 13 0 1336.7351 P50454 P50454 320 332 SERPINH1 Serpin H1 yes yes 3 0.02777 54.023 By MS/MS 5 0 1 1 7095900 0 0 7095900 5398 879 5620 22618 19020 19020 1 0 0 989750 HLAGLGLTEAIDKNK SLPKGVVEVTHDLQKHLAGLGLTEAIDKNK HLAGLGLTEAIDKNKADLSRMSGKKDLYLA K H L N K A 2 0 1 1 0 0 1 2 1 1 3 2 0 0 0 0 1 0 0 0 0 0 15 1 1578.873 P50454 P50454 320 334 SERPINH1 Serpin H1 yes yes 3 9.9156E-05 113.76 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 39091000 0 14688000 24404000 5399 879 5621 22619;22620;22621 19021;19022 19022 2 0 4183900 3403900 HLAGVPLIGWVLR LARGGSKGIPLKNIKHLAGVPLIGWVLRAA IKHLAGVPLIGWVLRAALDSGAFQSVWVST K H L L R A 1 1 0 0 0 0 0 2 1 1 3 0 0 0 1 0 0 1 0 2 0 0 13 0 1429.8558 Q8NFW8 Q8NFW8 65 77 CMAS N-acylneuraminate cytidylyltransferase yes yes 2;3 0.0013725 93.442 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 15897000 0 4494200 11403000 5400 1644 5622 22622;22623;22624;22625 19023;19024;19025 19024 3 0 1158500 1649300 HLAGYEQQDAHEFLIAALDVLHR HIPYKLLHLVWTHARHLAGYEQQDAHEFLI DAHEFLIAALDVLHRHCKGDDNGKKANNPN R H L H R H 4 1 0 2 0 2 2 1 3 1 4 0 0 1 0 0 0 0 1 1 0 0 23 0 2645.335 Q9UPT9 Q9UPT9 254 276 USP22 Ubiquitin carboxyl-terminal hydrolase 22 yes yes 4 1.8729E-07 85.248 By MS/MS 4 0 1 1 2973600 0 0 2973600 5401 2217 5623 22626 19026 19026 1 0 0 485680 HLAILGAGLMGAGIAQVSVDK LCKKNKFGAPQKDVKHLAILGAGLMGAGIA AGLMGAGIAQVSVDKGLKTILKDATLTALD K H L D K G 4 0 0 1 0 1 0 4 1 2 3 1 1 0 0 1 0 0 0 2 0 0 21 0 2020.1139 P40939 P40939 363 383 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 3 0.0024398 54.875 By MS/MS 3 0 1 1 5707700 0 0 5707700 5402 789 5624 22627 19027 19027 1 0 0 1107000 HLALNLQEK RLKYSQSDLEQTKTRHLALNLQEKSKLESE EQTKTRHLALNLQEKSKLESELANFGPRIN R H L E K S 1 0 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1064.5978 Q14683 Q14683 726 734 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 1.645E-07 160.69 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 210630000 0 34440000 176190000 5403 1312 5625 22628;22629;22630;22631;22632 19028;19029;19030 19028 3 0 15986000 38624000 HLALSQPFSFTQQDMPK NNDSDCGAFVLQYCKHLALSQPFSFTQQDM ALSQPFSFTQQDMPKLRRQIYKELCHCKLT K H L P K L 1 0 0 1 0 3 0 0 1 0 2 1 1 2 2 2 1 0 0 0 0 0 17 0 1973.9669 Q9H4L4 Q9H4L4 542 558 SENP3 Sentrin-specific protease 3 yes yes 2 8.8108E-06 120.55 By MS/MS 3 0 1 1 11847000 0 0 11847000 5404 1983 5626 22633 19031 19031 1 0 0 2297800 HLANVTQLVK QCRETFPQRHMRPNRHLANVTQLVKQLRTE MRPNRHLANVTQLVKQLRTERPSGPGGEMG R H L V K Q 1 0 1 0 0 1 0 0 1 0 2 1 0 0 0 0 1 0 0 2 0 0 10 0 1121.6557 P14373 P14373 70 79 TRIM27 Zinc finger protein RFP yes yes 2 0.00012369 144.79 By MS/MS By MS/MS 4 0 2 1 1 33933000 0 16174000 17759000 5405 557 5627 22634;22635 19032;19033 19032 2 0 5367500 2900700 HLAPPGLHPVPGGVFPVPPAAVVLMK YPKPDTQQMIPFQPRHLAPPGLHPVPGGVF GGVFPVPPAAVVLMKLLPPPICFQGPFVQV R H L M K L 3 0 0 0 0 0 0 3 2 0 3 1 1 1 7 0 0 0 0 5 0 0 26 0 2596.4716 Q12996 Q12996 596 621 CSTF3 Cleavage stimulation factor subunit 3 yes yes 4 0.00071002 45.784 By MS/MS 3 0 1 1 1426400 0 1426400 0 5406 1214 5628 22636 19034 19034 1 0 608080 0 HLAPPPLLSPLLPSIKPTVR APAPPQKPLNSQSQKHLAPPPLLSPLLPSI PLLSPLLPSIKPTVRKTRQDGSQEAPEAPL K H L V R K 1 1 0 0 0 0 0 0 1 1 5 1 0 0 6 2 1 0 0 1 0 0 20 1 2145.3038 Q14676 Q14676 1060 1079 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3;4 4.6848E-14 131.67 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 27102000 0 3285500 23817000 5407 1310 5629 22637;22638;22639;22640 19035;19036;19037;19038;19039 19036 4 0 1605900 5174700 HLASDAIINENYDYLK FKAEHWNRCHKLIIRHLASDAIINENYDYL LASDAIINENYDYLKGFLEDLAPPERSSLI R H L L K G 2 0 2 2 0 0 1 0 1 2 2 1 0 0 0 1 0 0 2 0 0 0 16 0 1877.9159 P52948 P52948 1653 1668 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 0.00013657 96.673 By MS/MS 2 0 1 1 13247000 0 0 13247000 5408 916 5630 22641 19040 19040 1 0 0 2993600 HLCQQLQAEQAAAEK HTSTQALVSELLPAKHLCQQLQAEQAAAEK HLCQQLQAEQAAAEKRHREELEQSKQAAGG K H L E K R 4 0 0 0 1 4 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 15 0 1723.8312 Q14980 Q14980 1365 1379 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.6516E-34 211.38 By MS/MS 1 0 2 2 3924800 0 0 3924800 5409 1327 5631 22642;22643 19041;19042 19041 2 0 0 845660 HLDALLR QYFDLEIYTTGRLEKHLDALLRQIRNIVEK YTTGRLEKHLDALLRQIRNIVEKHTDTDVL K H L L R Q 1 1 0 1 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 836.48684 Q8N3U4 Q8N3U4 608 614 STAG2 Cohesin subunit SA-2 yes yes 2 0.0029208 139.92 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 52723000 0 7367300 45356000 5410 1603 5632 22644;22645;22646;22647 19043;19044;19045;19046 19045 4 0 3317600 10003000 HLDDINFDVR KYITDVVKLNAFDQRHLDDINFDVRFETFQ AFDQRHLDDINFDVRFETFQTITSYIKEMQ R H L V R F 0 1 1 3 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1242.5993 O75691 O75691 1440 1449 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0046819 98.048 By MS/MS 1 0 1 1 0 0 0 0 5411 280 5633 22648 19047 19047 1 0 0 0 HLEAILTK TGEETEGMDGQIYKRHLEAILTKISLKNNL DGQIYKRHLEAILTKISLKNNLDHLLASLL R H L T K I 1 0 0 0 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 923.54402 Q9H583 Q9H583 378 385 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00036227 131.03 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 16122000 4232100 9764200 2126200 5412 1984 5634 22649;22650;22651 19048 19048 1 4232100 4772600 480470 HLEEIVEK GAAEEELQKSRVTVKHLEEIVEKLKGELES KSRVTVKHLEEIVEKLKGELESSDQVREHT K H L E K L 0 0 0 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 995.52876 Q9P2E9 Q9P2E9 1176 1183 RRBP1 Ribosome-binding protein 1 yes yes 2 0.0019796 110.03 By MS/MS 1 0 1 1 6929700 0 0 6929700 5413 2122 5635 22652 19049 19049 1 0 0 1493100 HLEHSTIIYEDPQHHPLLR ASVGADGSVRMFDLRHLEHSTIIYEDPQHH STIIYEDPQHHPLLRLCWNKQDPNYLATMA R H L L R L 0 1 0 1 0 1 2 0 4 2 3 0 0 0 2 1 1 0 1 0 0 0 19 0 2334.1869 P61962 P61962 208 226 DCAF7 DDB1- and CUL4-associated factor 7 yes yes 5 0.0035515 55.589 By MS/MS 5.5 0.5 1 1 2 27000000 0 0 27000000 5414 1000 5636 22653;22654 19050 19050 1 0 0 3890800 HLEINPDHSIIETLR ALRDNSTMGYMAAKKHLEINPDHSIIETLR HLEINPDHSIIETLRQKAEADKNDKSVKDL K H L L R Q 0 1 1 1 0 0 2 0 2 3 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1785.9373 P07900 P07900 633 647 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 3 0.00024634 95.57 By matching By MS/MS By MS/MS 3 0.632 1 3 1 1 1 3 85621000 27589000 16354000 41678000 5415 466 5637 22655;22656;22657;22658;22659 19051;19052;19053 19052 3 31831000 6971900 8304400 HLEMNPHFGSHR LVFLPGWNLIYTMQKHLEMNPHFGSHRYQI MQKHLEMNPHFGSHRYQILPLHSQIPREEQ K H L H R Y 0 1 1 0 0 0 1 1 3 0 1 0 1 1 1 1 0 0 0 0 0 0 12 0 1460.6732 Q08211 Q08211 669 680 DHX9 ATP-dependent RNA helicase A yes yes 2;3 5.9594E-35 214.58 By matching By MS/MS By MS/MS 2 0.853 3 6 1 1 1 4 6 134450000 2515500 28163000 103770000 5416 1182 5638;5639 22660;22661;22662;22663;22664;22665;22666;22667;22668;22669;22670 19054;19055;19056;19057;19058;19059;19060 19060 560 7 3030800 12726000 23022000 HLEVDVR SYEHRLHLKPGRLAKHLEVDVRIIEPQGLR LKPGRLAKHLEVDVRIIEPQGLRSLHVLDT K H L V R I 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 866.46102 CON__Q9TRI1 CON__Q9TRI1 208 214 yes yes 2 0.0075691 124.37 By MS/MS 4 0.816 1 1 1 3 15589000 0 0 15589000 + 5417 99 5640 22671;22672;22673 19061;19062 19062 2 0 0 2659700 HLFGQPNSAYDFK VSKMLKDYDWINAERHLFGQPNSAYDFKTN ERHLFGQPNSAYDFKTNNPKEAGQRLQKLQ R H L F K T 1 0 1 1 0 1 0 1 1 0 1 1 0 2 1 1 0 0 1 0 0 0 13 0 1522.7205 O95347 O95347 946 958 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 0.0018599 98.156 By matching By MS/MS 1.75 0.433 1 3 1 3 24112000 1312100 0 22800000 5418 321 5641 22674;22675;22676;22677 19063;19064;19065 19065 3 1580900 0 5057800 HLGAVNTIVFVDENRR QWDIRSGEIVQEYDRHLGAVNTIVFVDENR LGAVNTIVFVDENRRFVSTSDDKSLRVWEW R H L R R F 1 2 2 1 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 3 0 0 16 1 1838.9751 O60508 O60508 417 432 CDC40 Pre-mRNA-processing factor 17 yes yes 3 0.0053484 60.209 By MS/MS 3.5 0.5 1 1 2 15350000 0 0 15350000 5419 228 5642 22678;22679 19066 19066 1 0 0 2811400 HLGAYELLLK AKVTFELVYEELLARHLGAYELLLKVRPQQ ELLARHLGAYELLLKVRPQQLVKHLQMDIH R H L L K V 1 0 0 0 0 0 1 1 1 0 4 1 0 0 0 0 0 0 1 0 0 0 10 0 1155.6652 CON__Q3T052 CON__Q3T052 154 163 yes yes 2 0.00013903 143.73 By MS/MS 3 0 1 1 12978000 12978000 0 0 + 5420 85 5643 22680 19067 19067 1 14973000 0 0 HLGHVQQLLR KEGVENLRRVATDRRHLGHVQQLLRSSNRR ATDRRHLGHVQQLLRSSNRRLEQLHGELRE R H L L R S 0 1 0 0 0 2 0 1 2 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1199.6887 Q6P5Z2 Q6P5Z2 49 58 PKN3 Serine/threonine-protein kinase N3 yes yes 3 0.0053964 78.149 By MS/MS 1.5 0.5 1 1 2 8950400 0 0 8950400 5421 1492 5644 22681;22682 19068 19068 1 0 0 2000000 HLGYKPEEYK TWAGRPQDGVAVLVRHLGYKPEEYKMGRTK AVLVRHLGYKPEEYKMGRTKIFIRFPKTLF R H L Y K M 0 0 0 0 0 0 2 1 1 0 1 2 0 0 1 0 0 0 2 0 0 0 10 1 1262.6295 O00159 O00159 700 709 MYO1C Unconventional myosin-Ic yes yes 3 0.0070125 89.047 By MS/MS By MS/MS 2 0 2 1 1 3046700 0 3046700 0 5422 106 5645 22683;22684 19069;19070 19070 2 0 1372000 0 HLHDNWILHR GEVKTLMIQLLRGVKHLHDNWILHRDLKTS LRGVKHLHDNWILHRDLKTSNLLLSHAGIL K H L H R D 0 1 1 1 0 0 0 0 3 1 2 0 0 0 0 0 0 1 0 0 0 0 10 0 1339.6898 P21127;Q9UQ88 P21127 552 561 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 3 0.0037235 82.831 By matching By MS/MS 1.5 0.5 1 1 1 1 16750000 0 9160200 7589600 5423 620 5646 22685;22686 19071 19071 1 0 4477400 1715100 HLHPIQTSFQEATASK YKEVVVSVPQRIMARHLHPIQTSFQEATAS LHPIQTSFQEATASKVIVAVGDRSSNLRGE R H L S K V 2 0 0 0 0 2 1 0 2 1 1 1 0 1 1 2 2 0 0 0 0 0 16 0 1793.906 Q8TEM1 Q8TEM1 1561 1576 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 6.2388E-06 128.06 By MS/MS 1 0 1 1 24207000 0 0 24207000 5424 1666 5647 22687 19072 19072 1 0 0 5215700 HLHYWFVESQK SFRQYSGYLKGSGSKHLHYWFVESQKDPEN SGSKHLHYWFVESQKDPENSPVVLWLNGGP K H L Q K D 0 0 0 0 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 1 0 0 11 0 1472.7201 P10619 P10619 61 71 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes yes 3 0.033798 54.419 By MS/MS 6 0 1 1 13447000 0 0 13447000 5425 513 5648 22688 19073 19073 1 0 0 2011800 HLIEMGYLQGGK DGELYENGSFYFAKRHLIEMGYLQGGKMAY AKRHLIEMGYLQGGKMAYYEMRAEHSVDID R H L G K M 0 0 0 0 0 1 1 3 1 1 2 1 1 0 0 0 0 0 1 0 0 0 12 0 1344.686 Q8NFW8 Q8NFW8 223 234 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.050303 74.267 By MS/MS 5 0 1 1 13328000 0 0 13328000 5426 1644 5649 22689 19074 19074 0 0 0 1859100 HLILPEK DRWLSCETQLPVSFRHLILPEKYPPPTELL TQLPVSFRHLILPEKYPPPTELLDLQPLPV R H L E K Y 0 0 0 0 0 0 1 0 1 1 2 1 0 0 1 0 0 0 0 0 0 0 7 0 848.51199 O75643 O75643 1288 1294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0075691 124.37 By MS/MS By MS/MS 1 0 2 1 1 88580000 0 22423000 66158000 5427 277 5650 22690;22691 19075;19076 19076 2 0 10960000 14255000 HLILPEKYPPPTELLDLQPLPVSALR DRWLSCETQLPVSFRHLILPEKYPPPTELL TELLDLQPLPVSALRNSAFESLYQDKFPFF R H L L R N 1 1 0 1 0 1 2 0 1 1 7 1 0 0 6 1 1 0 1 1 0 0 26 1 2948.6739 O75643 O75643 1288 1313 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3;4 1.2195E-12 95.519 By MS/MS 1 0 2 2 27664000 0 0 27664000 5428 277 5651 22692;22693 19077;19078;19079 19079 3 0 0 5960700 HLIPAANTGESK ELKLICCDILDVLDKHLIPAANTGESKVFY LDKHLIPAANTGESKVFYYKMKGDYHRYLA K H L S K V 2 0 1 0 0 0 1 1 1 1 1 1 0 0 1 1 1 0 0 0 0 0 12 0 1236.6463 P62258 P62258 107 118 YWHAE 14-3-3 protein epsilon yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 48012000 1463000 0 46549000 5429 1011 5652 22694;22695;22696 19080;19081;19082 19081 3 3153100 0 7174100 HLIVLINK QTREHAMLAKTAGVKHLIVLINKMDDPTVN AKTAGVKHLIVLINKMDDPTVNWSIERYEE K H L N K M 0 0 1 0 0 0 0 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 8 0 948.61204 P15170;Q8IYD1 Q8IYD1 343 350 GSPT1;GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B no no 2 0.0040968 102.81 By MS/MS 3 0 1 1 6475100 0 6475100 0 5430 568;1593 5653 22697 19083 19083 1 0 2760300 0 HLLEGQNASVLAYGPTGAGK TQQDIYAGSVQPILRHLLEGQNASVLAYGP QNASVLAYGPTGAGKTHTMLGSPEQPGVIP R H L G K T 3 0 1 0 0 1 1 4 1 0 3 1 0 0 1 1 1 0 1 1 0 0 20 0 1982.0221 Q14807 Q14807 114 133 KIF22 Kinesin-like protein KIF22 yes yes 3 6.9083E-08 104.84 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 18200000 0 5254400 12946000 5431 1320 5654 22698;22699;22700 19084;19085 19084 2 0 2239900 2717200 HLLGAEHGDEPR SSDFRPSLPLPHFNKHLLGAEHGDEPRHGG FNKHLLGAEHGDEPRHGGLTLRLGLHQQGS K H L P R H 1 1 0 1 0 0 2 2 2 0 2 0 0 0 1 0 0 0 0 0 0 0 12 0 1329.6426 Q9BV38 Q9BV38 342 353 WDR18 WD repeat-containing protein 18 yes yes 3 0.00059538 107.09 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 50137000 0 4513700 45624000 5432 1910 5655 22701;22702;22703;22704 19086;19087;19088 19088 3 0 1163500 6436600 HLLGVEDLLQK MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV DYGKHLLGVEDLLQKHTLVEADIGIQAERV K H L Q K H 0 0 0 1 0 1 1 1 1 0 4 1 0 0 0 0 0 0 0 1 0 0 11 0 1263.7187 Q01082 Q01082 559 569 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.728E-59 234.81 By MS/MS By MS/MS 1.5 0.764 4 1 1 2 4 40891000 0 9268800 31622000 5433 1128 5656 22705;22706;22707;22708;22709;22710 19089;19090;19091;19092 19089 4 0 4530500 6797000 HLLHDQIQNK H L N K 0 0 1 1 0 2 0 0 2 1 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1244.6626 REV__Q92609 yes yes 2 0.002591 105.12 By MS/MS 7.25 0.433 3 1 4 107120000 107120000 0 0 + 5434 2340 5657 22711;22712;22713;22714 19093;19094 19093 2 228830000 0 0 HLLLAPSDVAGWGIFIK NVSCKNCSIQRGSKKHLLLAPSDVAGWGIF LLAPSDVAGWGIFIKDPVQKNEFISEYCGE K H L I K D 2 0 0 1 0 0 0 2 1 2 3 1 0 1 1 1 0 1 0 1 0 0 17 0 1836.0298 Q15910 Q15910 613 629 EZH2 Histone-lysine N-methyltransferase EZH2 yes yes 2 0.037128 59.57 By matching By MS/MS 2.5 0.5 1 1 1 1 3073300 0 1604500 1468800 5435 1383 5658 22715;22716 19095 19095 0 0 722540 284870 HLLQGWLR GLNDRSDAVKQAMQKHLLQGWLRFSEGNIL VKQAMQKHLLQGWLRFSEGNILELLHRLDV K H L L R F 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 1021.5821 Q9BPX3 Q9BPX3 268 275 NCAPG Condensin complex subunit 3 yes yes 2 0.0033746 105.27 By matching By MS/MS 2 0.816 1 1 1 1 2 11707000 534080 0 11173000 5436 1873 5659 22717;22718;22719 19096 19096 1 534080 0 2447000 HLLSAGDGEVK QAHDGPVYSMVSTDRHLLSAGDGEVKAWLW STDRHLLSAGDGEVKAWLWAEMLKKGCKEL R H L V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1124.5826 Q86W42 Q86W42 88 98 THOC6 THO complex subunit 6 homolog yes yes 2 3.6608E-08 163.38 By matching By MS/MS 6 0 2 1 1 22385000 0 3581300 18804000 5437 1555 5660 22720;22721 19097 19097 1 0 1239700 2813300 HLLSQPLFTESQK RRRQKQMKVLKKELRHLLSQPLFTESQKTK LRHLLSQPLFTESQKTKYPTQSGKPPLLVS R H L Q K T 0 0 0 0 0 2 1 0 1 0 3 1 0 1 1 2 1 0 0 0 0 0 13 0 1526.8093 Q9GZR7 Q9GZR7 794 806 DDX24 ATP-dependent RNA helicase DDX24 yes yes 3 0.024109 57.434 By MS/MS 2 0 1 1 5847800 0 0 5847800 5438 1952 5661 22722 19098 19098 0 0 0 1321500 HLLVSNVGGDGEEIER GSLMFHKLRPVDQLRHLLVSNVGGDGEEIE LLVSNVGGDGEEIERFFKLHQEDQACATCL R H L E R F 0 1 1 1 0 0 3 3 1 1 2 0 0 0 0 1 0 0 0 2 0 0 16 0 1722.8537 O75694 O75694 522 537 NUP155 Nuclear pore complex protein Nup155 yes yes 2;3 6.2354E-05 142.83 By MS/MS 1.67 0.471 1 2 3 35009000 0 0 35009000 5439 281 5662 22723;22724;22725 19099;19100;19101 19100 3 0 0 7836100 HLMLLSR YIHVKPVAAGGDMKKHLMLLSRAADSICDG AAGGDMKKHLMLLSRAADSICDGDLVDSQI K H L S R A 0 1 0 0 0 0 0 0 1 0 3 0 1 0 0 1 0 0 0 0 0 0 7 0 868.49529 P35251 P35251 904 910 RFC1 Replication factor C subunit 1 yes yes 2 0.03524 88.029 By matching By MS/MS 2 0 2 1 1 13006000 6628000 0 6377500 5440 746 5663 22726;22727 19102 19102 1 7986000 0 1441200 HLMLPDFDLLEDIESK PLSGGDQYQNITVHRHLMLPDFDLLEDIES LMLPDFDLLEDIESKIQPGSQQADFLDALI R H L S K I 0 0 0 3 0 0 2 0 1 1 4 1 1 1 1 1 0 0 0 0 0 0 16 0 1913.9445 P13010 P13010 82 97 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 1.8294E-20 138.02 By MS/MS 2.25 0.433 3 1 4 6056700 0 0 6056700 5441 542 5664;5665 22728;22729;22730;22731 19103;19104;19105 19105 242 2 0 0 1272100 HLMQDLR RILIFSSRGINFRTRHLMQDLRMLMPHSKA RGINFRTRHLMQDLRMLMPHSKADTKMDRK R H L L R M 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 7 0 911.46472 Q8TDN6 Q8TDN6 76 82 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 0.00022879 154.35 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 123120000 0 17873000 105250000 5442 1663 5666 22732;22733;22734;22735;22736 19106;19107;19108 19107 3 0 4871600 15046000 HLNDDVVK DAHTKEIDLVNRDPKHLNDDVVKIDFEDVI LVNRDPKHLNDDVVKIDFEDVIAEPEGTHS K H L V K I 0 0 1 2 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 938.48214 Q03135 Q03135 58 65 CAV1 Caveolin-1 yes yes 2 0.00026062 135 By MS/MS 8 0.816 1 1 1 3 8194900 0 0 8194900 5443 1155 5667 22737;22738;22739 19109 19109 1 0 0 1459200 HLNDLLEDRK GNEIEVMVSTEEAKRHLNDLLEDRKILAQD EEAKRHLNDLLEDRKILAQDVAQLKEKKES R H L R K I 0 1 1 2 0 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 10 1 1251.6571 O95239;Q2VIQ3 O95239 763 772 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 0.017829 63.624 By MS/MS 1.5 0.5 1 1 2 12730000 0 0 12730000 5444 314 5668 22740;22741 19110 19110 1 0 0 2814900 HLPPAALHLIAYYK RNSGGTPRTSSKPHKHLPPAALHLIAYYKE KHLPPAALHLIAYYKENKDREDKRSALSCV K H L Y K E 3 0 0 0 0 0 0 0 2 1 3 1 0 0 2 0 0 0 2 0 0 0 14 0 1605.9031 Q9UIG0 Q9UIG0 470 483 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 0.00036763 131.44 By MS/MS 2 0.816 1 1 1 3 23644000 0 0 23644000 5445 2164 5669 22742;22743;22744 19111;19112;19113 19111 3 0 0 5198200 HLPSTEPDPHVVR RVCFEMKINEEISVKHLPSTEPDPHVVRIG VKHLPSTEPDPHVVRIGWSLDSCSTQLGEE K H L V R I 0 1 0 1 0 0 1 0 2 0 1 0 0 0 3 1 1 0 0 2 0 0 13 0 1482.7579 Q9BUJ2 Q9BUJ2 271 283 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 3 7.7352E-05 123.84 By matching By MS/MS By MS/MS 3.2 1.47 1 3 2 2 1 1 1 3 6 104970000 2846200 29207000 72915000 5446 1907 5670 22745;22746;22747;22748;22749;22750;22751;22752;22753;22754 19114;19115;19116;19117;19118;19119;19120 19118 7 3429300 12144000 14934000 HLQDLMEGLTAK EDDLFDRLNTGILNKHLQDLMEGLTAKVFR LNKHLQDLMEGLTAKVFRTYNASITLQQQL K H L A K V 1 0 0 1 0 1 1 1 1 0 3 1 1 0 0 0 1 0 0 0 0 0 12 0 1354.6915 P11387 P11387 576 587 TOP1 DNA topoisomerase 1 yes yes 2;3 2.7706E-35 216.04 By MS/MS By MS/MS 2.5 0.806 1 4 4 1 5 5 265040000 0 32767000 232270000 5447 523 5671 22755;22756;22757;22758;22759;22760;22761;22762;22763;22764 19121;19122;19123;19124;19125;19126;19127 19124 7 0 14673000 49253000 HLQLAIR GNAARDNKKTRIIPRHLQLAIRNDEELNKL KKTRIIPRHLQLAIRNDEELNKLLGKVTIA R H L I R N 1 1 0 0 0 1 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 7 0 849.51847 Q71UI9;P0C0S5;Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q16777;Q6FI13;Q93077;Q7L7L0;P04908 Q99878 83 89 H2AFV;H2AFZ;HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A.V;Histone H2A.Z;Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 1;2 6.2108E-18 188.45 By MS/MS By MS/MS By MS/MS 6.64 2.7 3 2 4 1 3 3 7 10 6 6 11 17 17 25460000000 1058800000 10262000000 14139000000 5448 497;1399;1473;1740;574;496 5672 22765;22766;22767;22768;22769;22770;22771;22772;22773;22774;22775;22776;22777;22778;22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797;22798;22799;22800;22801;22802;22803;22804;22805;22806;22807;22808;22809 19128;19129;19130;19131;19132;19133;19134;19135;19136;19137;19138;19139;19140;19141;19142;19143;19144;19145;19146;19147;19148;19149;19150;19151;19152;19153;19154;19155;19156;19157;19158;19159;19160;19161;19162;19163;19164;19165;19166;19167;19168;19169;19170;19171;19172;19173;19174;19175;19176;19177;19178;19179;19180;19181;19182;19183;19184;19185;19186;19187;19188;19189;19190;19191;19192;19193;19194;19195;19196;19197;19198;19199;19200;19201;19202;19203;19204;19205;19206;19207;19208;19209;19210;19211;19212;19213;19214;19215;19216 19174 89 1151800000 7799800000 3540200000 HLQLAIRGDEELDSLIK GNASKDLKVKRITPRHLQLAIRGDEELDSL QLAIRGDEELDSLIKATIAGGGVIPHIHKS R H L I K A 1 1 0 2 0 1 2 1 1 2 4 1 0 0 0 1 0 0 0 0 0 0 17 1 1949.0582 Q71UI9;P0C0S5 Q71UI9 86 102 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 2;3;4 9.7039E-05 139.64 By matching By MS/MS By MS/MS 8 0 6 1 2 3 295510000 1888100 15607000 278020000 5449 496 5673 22810;22811;22812;22813;22814;22815 19217;19218;19219;19220;19221 19220 5 1621000 7100600 42623000 HLQLAIRNDEELNK GNAARDNKKTRIIPRHLQLAIRNDEELNKL RHLQLAIRNDEELNKLLGKVTIAQGGVLPN R H L N K L 1 1 2 1 0 1 2 0 1 1 3 1 0 0 0 0 0 0 0 0 0 0 14 1 1691.8955 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q16777;Q6FI13;Q93077;Q7L7L0;P04908 Q99878 83 96 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3;4 3.6281E-16 186.58 By MS/MS By MS/MS 7.67 0.471 3 6 5 4 566110000 0 283700000 282420000 5450 497;1399;1473;1740;574 5674 22816;22817;22818;22819;22820;22821;22822;22823;22824 19222;19223;19224;19225;19226;19227;19228 19222 7 0 132920000 43591000 HLQLAIRNDEELNKLLGK GNAARDNKKTRIIPRHLQLAIRNDEELNKL LAIRNDEELNKLLGKVTIAQGGVLPNIQAV R H L G K V 1 1 2 1 0 1 2 1 1 1 5 2 0 0 0 0 0 0 0 0 0 0 18 2 2103.18 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;Q16777;Q6FI13 Q99878 83 100 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;HIST2H2AC;HIST2H2AA3 Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 2-C;Histone H2A type 2-A no no 3;4 0.00085559 74.12 By MS/MS By MS/MS 7.5 0.764 1 1 4 3 3 40723000 0 12788000 27935000 5451 497;1399;1473 5675 22825;22826;22827;22828;22829;22830 19229;19230;19231;19232 19231 4 0 5476200 4341800 HLQLAIRNDEELNKLLGR GNAARDNKKTRIIPRHLQLAIRNDEELNKL LAIRNDEELNKLLGRVTIAQGGVLPNIQAV R H L G R V 1 2 2 1 0 1 2 1 1 1 5 1 0 0 0 0 0 0 0 0 0 0 18 2 2131.1862 Q93077;Q7L7L0;P04908 Q93077 83 100 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 4 0.057869 33.769 By matching By MS/MS 8 0 2 1 1 7209700 0 3170800 4038900 5452 1740 5676 22831;22832 19233 19233 1 0 1442600 619200 HLQLAVR GNAARDNKKTRIIPRHLQLAVRNDEELNKL KKTRIIPRHLQLAVRNDEELNKLLGGVTIA R H L V R N 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 835.50282 Q8IUE6 Q8IUE6 83 89 HIST2H2AB Histone H2A type 2-B yes yes 2 3.1385E-12 182.31 By MS/MS By MS/MS By MS/MS 8.36 1.15 1 1 4 3 2 2 6 3 1215500000 64547000 455740000 695210000 5453 1566 5677 22833;22834;22835;22836;22837;22838;22839;22840;22841;22842;22843 19234;19235;19236;19237;19238;19239;19240;19241;19242;19243;19244 19238 11 49535000 247940000 144350000 HLQTGENHTSVDPR RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ KHLQTGENHTSVDPRQTQFGGLNTPYPGGL K H L P R Q 0 1 1 1 0 1 1 1 2 0 1 0 0 0 1 1 2 0 0 1 0 0 14 0 1589.7546 O94906 O94906 190 203 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.0060246 68.044 By MS/MS 2 0 1 1 8423100 0 8423100 0 5454 305 5678 22844 19245 19245 1 0 3793000 0 HLSDHLSELVEQTLSDLEQSK TQNPNYYNLQGISHRHLSDHLSELVEQTLS SELVEQTLSDLEQSKCISIEDEMDVAPLNL R H L S K C 0 0 0 2 0 2 3 0 2 0 5 1 0 0 0 4 1 0 0 1 0 0 21 0 2407.1867 O75643 O75643 1780 1800 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3;4 1.7839E-15 157.98 By MS/MS 1.33 0.471 2 1 3 11443000 0 0 11443000 5455 277 5679 22845;22846;22847 19246;19247 19247 2 0 0 2473600 HLSVNDLPVGR ALRGLFIIDPNGVIKHLSVNDLPVGRSVEE GVIKHLSVNDLPVGRSVEETLRLVKAFQYV K H L G R S 0 1 1 1 0 0 0 1 1 0 2 0 0 0 1 1 0 0 0 2 0 0 11 0 1205.6517 P30048 P30048 197 207 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2;3 0.0012828 111.46 By MS/MS 7 0 2 2 9116400 0 9116400 0 5456 707 5680 22848;22849 19248;19249 19248 2 0 5234700 0 HLTDAYFK ATSTKIDISNVKIPKHLTDAYFKKKKLRKP SNVKIPKHLTDAYFKKKKLRKPRHQEGEIF K H L F K K 1 0 0 1 0 0 0 0 1 0 1 1 0 1 0 0 1 0 1 0 0 0 8 0 993.49198 Q02878 Q02878 211 218 RPL6 60S ribosomal protein L6 yes yes 2 0.00065881 120.92 By MS/MS By MS/MS 4.62 1.8 1 1 1 2 2 1 2 6 316660000 0 104980000 211680000 5457 1149 5681 22850;22851;22852;22853;22854;22855;22856;22857 19250;19251;19252;19253;19254;19255 19250 6 0 36341000 34826000 HLTDAYFKK ATSTKIDISNVKIPKHLTDAYFKKKKLRKP NVKIPKHLTDAYFKKKKLRKPRHQEGEIFD K H L K K K 1 0 0 1 0 0 0 0 1 0 1 2 0 1 0 0 1 0 1 0 0 0 9 1 1121.5869 Q02878 Q02878 211 219 RPL6 60S ribosomal protein L6 yes yes 2 0.014559 95.605 By MS/MS 6 0 1 1 0 0 0 0 5458 1149 5682 22858 19256 19256 1 0 0 0 HLTDPSYGIPR PGSRWRNLPSGPSLKHLTDPSYGIPREQQK PSLKHLTDPSYGIPREQQKAALQELTRAHV K H L P R E 0 1 0 1 0 0 0 1 1 1 1 0 0 0 2 1 1 0 1 0 0 0 11 0 1254.6357 Q9H9Y6 Q9H9Y6 18 28 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 0.059188 71.614 By matching By MS/MS 1.5 0.5 1 1 1 1 8934600 0 2186000 6748600 5459 2000 5683 22859;22860 19257 19257 1 0 1068500 1525000 HLTGEFEK LVGDGGTGKTTFVKRHLTGEFEKKYVATLG KTTFVKRHLTGEFEKKYVATLGVEVHPLVF R H L E K K 0 0 0 0 0 0 2 1 1 0 1 1 0 1 0 0 1 0 0 0 0 0 8 0 959.47125 P62826 P62826 30 37 RAN GTP-binding nuclear protein Ran yes yes 2 6.1221E-45 179.21 By MS/MS By MS/MS 7.57 1.4 2 2 1 1 1 2 5 309940000 0 8775500 301160000 5460 1035 5684 22861;22862;22863;22864;22865;22866;22867 19258;19259;19260;19261;19262 19259 5 0 4783900 58997000 HLTYENVER YRGAVGALLVYDIAKHLTYENVERWLKELR VYDIAKHLTYENVERWLKELRDHADSNIVI K H L E R W 0 1 1 0 0 0 2 0 1 0 1 0 0 0 0 0 1 0 1 1 0 0 9 0 1159.5622 Q15907;P62491 Q15907 96 104 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 2 1.6055E-11 172.21 By MS/MS 8 1 1 1 2 23428000 0 0 23428000 5461 1027 5685 22868;22869 19263;19264 19263 2 0 0 4582200 HLTYNDFINK LHGLPEQFLYGTATKHLTYNDFINKELILF GTATKHLTYNDFINKELILFSNSDNERSIP K H L N K E 0 0 2 1 0 0 0 0 1 1 1 1 0 1 0 0 1 0 1 0 0 0 10 0 1263.6248 Q02880 Q02880 713 722 TOP2B DNA topoisomerase 2-beta yes yes 2 7.072E-24 195.79 By MS/MS By MS/MS 1 0 2 1 1 47030000 0 3479100 43551000 5462 1150 5686 22870;22871 19265;19266 19266 2 0 1700500 9383700 HLVAEFVQVLETLSHDTLVTTK RDRRLILWYFEHQLKHLVAEFVQVLETLSH QVLETLSHDTLVTTKTRALTVAHELLCNKP K H L T K T 1 0 0 1 0 1 2 0 2 0 4 1 0 1 0 1 4 0 0 4 0 0 22 0 2479.3322 Q03701 Q03701 341 362 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 1.5239E-20 132.83 By MS/MS 2 0 1 1 11879000 0 0 11879000 5463 1157 5687 22872 19267 19267 1 0 0 2684400 HLVDEPQNLIK DDPHACYSTVFDKLKHLVDEPQNLIKQNCD DKLKHLVDEPQNLIKQNCDQFEKLGEYGFQ K H L I K Q 0 0 1 1 0 1 1 0 1 1 2 1 0 0 1 0 0 0 0 1 0 0 11 0 1304.7089 CON__P02769 CON__P02769 402 412 yes yes 2;3 1.4071E-89 250.62 By MS/MS By MS/MS By MS/MS 4.5 2.47 4 3 8 6 4 3 3 2 1 2 19 9 8 2810500000 2060900000 271420000 478220000 + 5464 45 5688 22873;22874;22875;22876;22877;22878;22879;22880;22881;22882;22883;22884;22885;22886;22887;22888;22889;22890;22891;22892;22893;22894;22895;22896;22897;22898;22899;22900;22901;22902;22903;22904;22905;22906;22907;22908 19268;19269;19270;19271;19272;19273;19274;19275;19276;19277;19278;19279;19280;19281;19282;19283;19284;19285;19286;19287;19288;19289;19290;19291;19292;19293;19294;19295;19296;19297;19298;19299;19300;19301;19302 19268 35 2020400000 313810000 86924000 HLVMGDIPAAVNAFQEAASLLGK DVDSEAKKLLGLGQKHLVMGDIPAAVNAFQ AAVNAFQEAASLLGKKYGETANECGEAFFF K H L G K K 5 0 1 1 0 1 1 2 1 1 3 1 1 1 1 1 0 0 0 2 0 0 23 0 2351.2308 P49321 P49321 53 75 NASP Nuclear autoantigenic sperm protein yes yes 3 6.3673E-10 96.016 By MS/MS 3.5 0.5 1 1 2 4985300 0 0 4985300 5465 852 5689 22909;22910 19303 19303 1 0 0 869860 HLVSAGYVHVNR AVGFPGAGKSTFLKKHLVSAGYVHVNRDTL LKKHLVSAGYVHVNRDTLGSWQRCVTTCET K H L N R D 1 1 1 0 0 0 0 1 2 0 1 0 0 0 0 1 0 0 1 3 0 0 12 0 1350.7157 Q96T60 Q96T60 385 396 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 3 8.3721E-06 147.3 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 55601000 0 9697600 45903000 5466 1840 5690 22911;22912;22913 19304;19305;19306 19306 3 0 3218300 7730700 HLVVPGDTITTDTGFMR ARKPLSERLGRDTKKHLVVPGDTITTDTGF VVPGDTITTDTGFMRGHGTYMGEEKLIASV K H L M R G 0 1 0 2 0 0 0 2 1 1 1 0 1 1 1 0 4 0 0 2 0 0 17 0 1858.9247 Q13868 Q13868 25 41 EXOSC2 Exosome complex component RRP4 yes yes 2;3 1.5944E-13 180.2 By matching By MS/MS 6 0 3 1 2 32712000 0 4578800 28133000 5467 1273 5691 22914;22915;22916 19307;19308 19307 1 0 1585000 4209000 HLVYESDQNKDGK WILPSDYDHAEAEARHLVYESDQNKDGKLT ARHLVYESDQNKDGKLTKEEIVDKYDLFVG R H L G K L 0 0 1 2 0 1 1 1 1 0 1 2 0 0 0 1 0 0 1 1 0 0 13 1 1531.7267 O43852 O43852 272 284 CALU Calumenin yes yes 3 0.010227 70.412 By matching By MS/MS 6 0.816 1 1 1 1 2 6551700 0 997630 5554100 5468 217 5692 22917;22918;22919 19309;19310 19309 2 0 257160 911720 HLWFQGIR QLILELIEKQETSNKHLWFQGIRRQITASE KQETSNKHLWFQGIRRQITASELLSSAIIT K H L I R R 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 8 0 1055.5665 P58107 P58107 2171 2178 EPPK1 Epiplakin yes yes 2 0.0017366 111.69 By MS/MS 1 0 1 1 9204000 0 0 9204000 5469 958 5693 22920 19311 19311 1 0 0 1983100 HLWSPFGLR SSRLGPLLDILADSRHLWSPFGLRSLAASS ILADSRHLWSPFGLRSLAASSSFYGQRNSE R H L L R S 0 1 0 0 0 0 0 1 1 0 2 0 0 1 1 1 0 1 0 0 0 0 9 0 1111.5927 Q13724 Q13724 721 729 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2 0.0077151 92.187 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 4260100 0 4260100 0 5470 1266 5694 22921;22922 19312;19313 19312 2 0 1918400 0 HMDGGQIDGQEITATAVLAPWPRPPPR YVEFENPDEAEKALKHMDGGQIDGQEITAT TATAVLAPWPRPPPRRFSPPRRMLPPPPMW K H M P R R 3 2 0 2 0 2 1 3 1 2 1 0 1 0 5 0 2 1 0 1 0 0 27 1 2909.4606 Q15287 Q15287 222 248 RNPS1 RNA-binding protein with serine-rich domain 1 yes yes 3;4 9.5541E-43 165.85 By MS/MS By MS/MS 4.5 0.764 1 1 4 2 4 56241000 0 12990000 43251000 5471 1353 5695;5696 22923;22924;22925;22926;22927;22928 19314;19315;19316;19317;19318;19319 19319 620 6 0 3348500 6335100 HMDITEDLTNK ELCKILEEMREEIHRHMDITEDLTNKARGS EIHRHMDITEDLTNKARGSNKSFLAAANEE R H M N K A 0 0 1 2 0 0 1 0 1 1 1 1 1 0 0 0 2 0 0 0 0 0 11 0 1315.6078 Q12830 Q12830 530 540 BPTF Nucleosome-remodeling factor subunit BPTF yes yes 2 0.0020744 97.472 By MS/MS 1 0 1 1 8815800 0 0 8815800 5472 1203 5697 22929 19320 19320 0 0 0 1899500 HMDQPLPTAIGLYK FMDREKKEDLEFQAKHMDQPLPTAIGLYKN KHMDQPLPTAIGLYKNHPLYALKRHLLKYE K H M Y K N 1 0 0 1 0 1 0 1 1 1 2 1 1 0 2 0 1 0 1 0 0 0 14 0 1582.8177 Q01831 Q01831 629 642 XPC DNA repair protein complementing XP-C cells yes yes 3 0.028304 50.843 By MS/MS 2 0 1 1 4442700 0 0 4442700 5473 1140 5698 22930 19321 19321 1 0 0 1004000 HMLPSGFR ILMPNIGYGSNKKTKHMLPSGFRKFLVHNV GSNKKTKHMLPSGFRKFLVHNVKELEVLLM K H M F R K 0 1 0 0 0 0 0 1 1 0 1 0 1 1 1 1 0 0 0 0 0 0 8 0 943.46981 P62910 P62910 68 75 RPL32 60S ribosomal protein L32 yes yes 2 0.0010257 121.52 By MS/MS By MS/MS 7.75 0.968 4 3 1 3 5 215450000 0 62185000 153270000 5474 1050 5699;5700 22931;22932;22933;22934;22935;22936;22937;22938 19322;19323;19324;19325;19326 19323 506 5 0 35328000 48250000 HMLPTVLR INVLSEVCGQDITTKHMLPTVLRMAGDPVA GQDITTKHMLPTVLRMAGDPVANVRFNVAK K H M L R M 0 1 0 0 0 0 0 0 1 0 2 0 1 0 1 0 1 0 0 1 0 0 8 0 965.54806 P30153 P30153 520 527 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 2 2.1653E-05 152.39 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 33586000 3042600 7238900 23305000 5475 712 5701 22939;22940;22941;22942 19327;19328;19329 19327 3 2373700 2402300 3967900 HMQNSEIIR QCSGCKGVVTAEMFRHMQNSEIIRKMTEEF TAEMFRHMQNSEIIRKMTEEFDEDSGDYPL R H M I R K 0 1 1 0 0 1 1 0 1 2 0 0 1 0 0 1 0 0 0 0 0 0 9 0 1126.5553 Q8N3U4 Q8N3U4 138 146 STAG2 Cohesin subunit SA-2 yes yes 2 0.032784 76.478 By MS/MS 2 0 1 1 3318000 0 3318000 0 5476 1603 5702 22943 19330 19330 1 0 1494100 0 HMSVSSIK RPEGLNFQDLKNQLKHMSVSSIKQAVDFLS DLKNQLKHMSVSSIKQAVDFLSNEGHIYST K H M I K Q 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 3 0 0 0 1 0 0 8 0 887.45349 P15927 P15927 236 243 RPA2 Replication protein A 32 kDa subunit yes yes 2 0.00041879 130.22 By MS/MS By MS/MS 6 0 2 1 1 4138100 0 3474600 663430 5477 573 5703 22944;22945 19331;19332 19332 2 0 1202800 99257 HMYHSLYLK RRLLRRYRESKKIDRHMYHSLYLKVKGNVF SKKIDRHMYHSLYLKVKGNVFKNKRILMEH R H M L K V 0 0 0 0 0 0 0 0 2 0 2 1 1 0 0 1 0 0 2 0 0 0 9 0 1190.5906 P84098 P84098 118 126 RPL19 60S ribosomal protein L19 yes yes 2;3 0.00016676 141.52 By MS/MS By MS/MS 6.56 0.685 1 2 6 3 6 169270000 0 21380000 147890000 5478 1111 5704;5705 22946;22947;22948;22949;22950;22951;22952;22953;22954 19333;19334;19335;19336;19337 19337 527 5 0 12277000 25037000 HNGPNDASDGTVR ______________________________ MKHNGPNDASDGTVRLRGLPFGCSKEEIVQ K H N V R L 1 1 2 2 0 0 0 2 1 0 0 0 0 0 1 1 1 0 0 1 0 0 13 0 1338.5913 P31942 P31942 7 19 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 0.00096171 115.18 By MS/MS 6 0 1 1 1890700 0 1890700 0 5479 721 5706 22955 19338 19338 1 0 654490 0 HNHGAYQFFR ANSTQMKKVMLTVFKHNHGAYQFFREALQF LTVFKHNHGAYQFFREALQFEIDDSSPSMS K H N F R E 1 1 1 0 0 1 0 1 2 0 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1275.5897 Q86UY6 Q86UY6 178 187 NAA40 N-alpha-acetyltransferase 40 yes yes 3 1.5289E-14 132.84 By MS/MS 6.5 0.5 1 1 2 9606600 0 0 9606600 5480 1550 5707 22956;22957 19339;19340 19340 2 0 0 1437300 HNHWAGLYGR FNTLIPWCLPHTGNRHNHWAGLYGRLEWDG HTGNRHNHWAGLYGRLEWDGFFSTTVTNPE R H N G R L 1 1 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 1 1 0 0 0 10 0 1209.5792 P26358 P26358 1507 1516 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.0095489 72.275 By MS/MS 1 0 1 1 25132000 0 0 25132000 5481 667 5708 22958 19341 19341 1 0 0 5415000 HNIMDFAMPYFIQVMK YDLLRPDVVLETAWRHNIMDFAMPYFIQVM NIMDFAMPYFIQVMKEYLTKVDKLDASESL R H N M K E 1 0 1 1 0 1 0 0 1 2 0 1 3 2 1 0 0 0 1 1 0 0 16 0 1983.9409 Q00610 Q00610 1589 1604 CLTC Clathrin heavy chain 1 yes yes 2;3 1.0341E-12 109.07 By MS/MS By MS/MS 2.29 0.881 1 4 1 1 2 5 43425000 0 2181200 41243000 5482 1125 5709;5710 22959;22960;22961;22962;22963;22964;22965 19342;19343;19344;19345;19346;19347 19346 534 6 0 982230 8784500 HNLEYPDFYR LSLLALNGLFILIHKHNLEYPDFYRKLYGL ILIHKHNLEYPDFYRKLYGLLDPSVFHVKY K H N Y R K 0 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 2 0 0 0 10 0 1352.6149 Q9BVI4 Q9BVI4 319 328 NOC4L Nucleolar complex protein 4 homolog yes yes 2 2.0204E-11 172.59 By MS/MS 4 0 1 1 14595000 0 0 14595000 5483 1914 5711 22966 19348 19348 1 0 0 2383800 HNLITEMVALNPDFKPPADYKPPATR NTREFRTRKKLEEERHNLITEMVALNPDFK PDFKPPADYKPPATRVSDKVMIPQDEYPEI R H N T R V 3 1 2 2 0 0 1 0 1 1 2 2 1 1 5 0 2 0 1 1 0 0 26 2 2934.5062 Q15637 Q15637 110 135 SF1 Splicing factor 1 yes yes 4 4.7402E-05 63.291 By matching By MS/MS 2.5 0.5 1 1 1 1 18648000 0 1493700 17154000 5484 1376 5712 22967;22968 19349 19349 1 0 672620 3327000 HNLQDFINIK FCPEEGDWKNSNLDRHNLQDFINIKLNSAS SNLDRHNLQDFINIKLNSASILPEMEGLSE R H N I K L 0 0 2 1 0 1 0 0 1 2 1 1 0 1 0 0 0 0 0 0 0 0 10 0 1240.6564 P46821 P46821 204 213 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 1.4423E-38 209.6 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39193000 0 3320600 35872000 5485 834 5713 22969;22970;22971 19350;19351 19351 2 0 1623100 7842300 HNLYSSESEDR IRYLVPDLVQEYIEKHNLYSSESEDRNAGV YIEKHNLYSSESEDRNAGVILAPLQRNTAE K H N D R N 0 1 1 1 0 0 2 0 1 0 1 0 0 0 0 3 0 0 1 0 0 0 11 0 1335.5691 Q9HAN9 Q9HAN9 251 261 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes yes 2 6.3378E-10 171.56 By MS/MS 6 0 1 1 4301000 0 0 4301000 5486 2002 5714 22972 19352 19352 1 0 0 643470 HNNQQALSHSIEEGLK EYEAHQERVLARINKHNNQQALSHSIEEGL NNQQALSHSIEEGLKIQAMNRLQRGKKQQI K H N L K I 1 0 2 0 0 2 2 1 2 1 2 1 0 0 0 2 0 0 0 0 0 0 16 0 1803.8864 Q99496 Q99496 134 149 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 2 0.0050966 80.69 By MS/MS 5 0 1 1 4603900 0 0 4603900 5487 1846 5715 22973 19353 19353 1 0 0 642160 HNPTVTGHQEQTYLQK GQLNRYSSRNFPAERHNPTVTGHQEQTYLQ NPTVTGHQEQTYLQKETSTLQVEQNGDYGR R H N Q K E 0 0 1 0 0 3 1 1 2 0 1 1 0 0 1 0 3 0 1 1 0 0 16 0 1879.9177 Q71RC2 Q71RC2 413 428 LARP4 La-related protein 4 yes yes 3 0.0006708 84.859 By MS/MS By MS/MS 2.67 1.11 1 2 1 2 4 2 21237000 0 15379000 5858500 5488 1514 5716 22974;22975;22976;22977;22978;22979 19354;19355;19356;19357 19354 4 0 6594300 1206700 HNVASDCGCFMLVK RCTLGILSEGNSRVRHNVASDCGCFMLVKS RHNVASDCGCFMLVKSVAVIKHNMVCGNCE R H N V K S 1 0 1 1 2 0 0 1 1 0 1 1 1 1 0 1 0 0 0 2 0 0 14 0 1636.716 P03243;P03244 P03243 324 337 yes no 2 5.6748E-05 159.5 By MS/MS 1 0 1 1 7411900 0 0 7411900 5489 406 5717 22980 19358 19358 1 0 0 1597000 HPAKPDPSGECNPDLR TKTPSSDVLVFDYTKHPAKPDPSGECNPDL PAKPDPSGECNPDLRLRGHQKEGYGLSWNS K H P L R L 1 1 1 2 1 0 1 1 1 0 1 1 0 0 4 1 0 0 0 0 0 0 16 1 1788.8213 Q16576 Q16576 156 171 RBBP7 Histone-binding protein RBBP7 yes yes 3 8.1919E-06 123.29 By matching By MS/MS 4 0.816 1 1 1 1 2 4941500 208570 0 4732900 5490 1390 5718 22981;22982;22983 19359;19360 19360 2 240640 0 684340 HPDASVNFSEFSK YAFFVQTCREEHKKKHPDASVNFSEFSKKC KKHPDASVNFSEFSKKCSERWKTMSAKEKG K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 P09429 P09429 31 43 HMGB1 High mobility group protein B1 yes yes 2;3 1.9053E-88 253.97 By MS/MS By MS/MS 6.67 1.11 4 1 1 2 4 396100000 0 5365700 390730000 5491 484 5719 22984;22985;22986;22987;22988;22989 19361;19362;19363;19364;19365;19366;19367 19363 7 0 1857400 64934000 HPDASVNFSEFSKK YAFFVQTCREEHKKKHPDASVNFSEFSKKC KHPDASVNFSEFSKKCSERWKTMSAKEKGK K H P K K C 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P09429 P09429 31 44 HMGB1 High mobility group protein B1 yes yes 3 0.0012218 85.457 By matching By MS/MS 6 0.816 1 1 1 1 2 39858000 2138600 37719000 0 5492 484 5720 22990;22991;22992 19368;19369 19368 2 1713300 17163000 0 HPDSHQLFIGNLPHEVDKSELK EAGEQGDIEPRRMVRHPDSHQLFIGNLPHE FIGNLPHEVDKSELKDFFQSYGNVVELRIN R H P L K D 0 0 1 2 0 1 2 1 3 1 3 2 0 1 2 2 0 0 0 1 0 0 22 1 2539.2819 Q13283 Q13283 336 357 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 4 0.019622 35.166 By MS/MS 4 0 1 1 19217000 0 0 19217000 5493 1236 5721 22993 19370 19370 1 0 0 3138800 HPDSSVNFAEFSK YAFFVQTCREEHKKKHPDSSVNFAEFSKKC KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K H P S K K 1 0 1 1 0 0 1 0 1 0 0 1 0 2 1 3 0 0 0 1 0 0 13 0 1463.6681 P26583 P26583 31 43 HMGB2 High mobility group protein B2 yes yes 2;3 1.4842E-88 255.3 By MS/MS By MS/MS 6.43 0.495 4 3 2 5 506390000 0 10192000 496190000 5494 670 5722 22994;22995;22996;22997;22998;22999;23000 19371;19372;19373;19374;19375;19376;19377;19378;19379 19377 9 0 5257900 81854000 HPDSSVNFAEFSKK YAFFVQTCREEHKKKHPDSSVNFAEFSKKC KHPDSSVNFAEFSKKCSERWKTMSAKEKSK K H P K K C 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P26583 P26583 31 44 HMGB2 High mobility group protein B2 yes yes 3 0.00025541 106.58 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 39225000 0 15947000 23278000 5495 670 5723 23001;23002;23003 19380;19381 19381 2 0 8269000 4130500 HPDVEVDGFSELR WYHFSCFWKVGHSIRHPDVEVDGFSELRWD IRHPDVEVDGFSELRWDDQQKVKKTAEAGG R H P L R W 0 1 0 2 0 0 2 1 1 0 1 0 0 1 1 1 0 0 0 2 0 0 13 0 1498.7052 P09874 P09874 66 78 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.0719E-195 309.94 By MS/MS By MS/MS 2 0.877 4 6 2 1 2 11 421970000 0 17979000 403990000 5496 492 5724 23004;23005;23006;23007;23008;23009;23010;23011;23012;23013;23014;23015;23016 19382;19383;19384;19385;19386;19387;19388;19389;19390;19391;19392;19393;19394;19395;19396;19397;19398 19395 17 0 8096100 88695000 HPDYSVVLLLR KDVFLGMFLYEYARRHPDYSVVLLLRLAKT YARRHPDYSVVLLLRLAKTYETTLEKCCAA R H P L R L 0 1 0 1 0 0 0 0 1 0 3 0 0 0 1 1 0 0 1 2 0 0 11 0 1310.7347 CON__P02768-1;P02768 CON__P02768-1 362 372 ALB Serum albumin yes no 2;3 4.072E-171 297.37 By MS/MS 7.2 2.32 1 1 2 1 1 2 2 10 268450000 268450000 0 0 + 5497 44 5725 23017;23018;23019;23020;23021;23022;23023;23024;23025;23026 19399;19400;19401;19402;19403;19404;19405;19406;19407;19408 19405 10 185380000 0 0 HPEAEMAQNSVR ITEPAVCALRHLTSRHPEAEMAQNSVRLNY TSRHPEAEMAQNSVRLNYGIPAIVKLLNQP R H P V R L 2 1 1 0 0 1 2 0 1 0 0 0 1 0 1 1 0 0 0 1 0 0 12 0 1367.6252 P14923 P14923 466 477 JUP Junction plakoglobin yes yes 2;3 9.7605E-05 140.16 By MS/MS By MS/MS 5.79 3.22 2 2 3 1 1 1 1 2 3 3 13 6 31752000 19126000 0 12626000 5498 567 5726 23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040;23041;23042;23043;23044;23045 19409;19410;19411;19412;19413;19414;19415;19416;19417;19418;19419 19417 11 18714000 0 4483100 HPELADKNVPNLHVMK KEGVMVAKKDVHMPKHPELADKNVPNLHVM PELADKNVPNLHVMKAMQSLKSRGYVKEQF K H P M K A 1 0 2 1 0 0 1 0 2 0 2 2 1 0 2 0 0 0 0 2 0 0 16 1 1840.9618 P46783;Q9NQ39 P46783 32 47 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 4 0.018371 48.899 By MS/MS 7 0 1 1 27927000 0 27927000 0 5499 833 5727 23046 19420;19421 19421 2 0 16036000 0 HPELNISEEGITK QRKEYEEIMRDYIQKHPELNISEEGITKST QKHPELNISEEGITKSTLTKAERQLKDKFD K H P T K S 0 0 1 0 0 0 3 1 1 2 1 1 0 0 1 1 1 0 0 0 0 0 13 0 1465.7413 P17480 P17480 267 279 UBTF Nucleolar transcription factor 1 yes yes 2;3 1.2968E-17 193.81 By MS/MS By MS/MS 2.9 1.58 2 3 2 1 1 1 2 8 188470000 0 14020000 174450000 5500 584 5728 23047;23048;23049;23050;23051;23052;23053;23054;23055;23056 19422;19423;19424;19425;19426;19427 19426 5 0 6361000 36466000 HPEVYHHLGVVPPR DMTLKEVCKMLIHMRHPEVYHHLGVVPPRG RHPEVYHHLGVVPPRGVLLHGPPGCGKTLL R H P P R G 0 1 0 0 0 0 1 1 3 0 1 0 0 0 3 0 0 0 1 3 0 0 14 0 1635.8634 O15381 O15381 286 299 NVL Nuclear valosin-containing protein-like yes yes 4 0.0013768 83.617 By MS/MS 3 0.816 1 1 1 3 14337000 0 0 14337000 5501 180 5729 23057;23058;23059 19428;19429 19429 2 0 0 3013100 HPEYAVSVLLR KDAFLGSFLYEYSRRHPEYAVSVLLRLAKE YSRRHPEYAVSVLLRLAKEYEATLEECCAK R H P L R L 1 1 0 0 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 0 11 0 1282.7034 CON__P02769 CON__P02769 361 371 yes yes 2;3 9.6232E-05 119.22 By MS/MS By MS/MS By MS/MS 4.73 2.77 1 3 3 1 1 3 2 1 7 2 6 65225000 26563000 12084000 26577000 + 5502 45 5730 23060;23061;23062;23063;23064;23065;23066;23067;23068;23069;23070;23071;23072;23073;23074 19430;19431;19432;19433;19434;19435;19436 19431 6 28656000 9087600 5225900 HPFSFPLENQAR FFVTKKPTSQIPETKHPFSFPLENQAREAV ETKHPFSFPLENQAREAVSSAFFSLLQTLS K H P A R E 1 1 1 0 0 1 1 0 1 0 1 0 0 2 2 1 0 0 0 0 0 0 12 0 1441.7102 Q9BQG0 Q9BQG0 499 510 MYBBP1A Myb-binding protein 1A yes yes 2;3 0.0016128 96.229 By MS/MS By MS/MS 1.71 0.7 3 3 1 4 3 56161000 0 24817000 31344000 5503 1885 5731 23075;23076;23077;23078;23079;23080;23081 19437;19438;19439;19440 19438 4 0 11439000 6906500 HPGASDRPQPTAMNSIVMETGNTK KADANRTAPSGSEYRHPGASDRPQPTAMNS PTAMNSIVMETGNTKNSALMAKKAPTMPKP R H P T K N 2 1 2 1 0 1 1 2 1 1 0 1 2 0 3 2 3 0 0 1 0 0 24 1 2538.1955 O43660 O43660 150 173 PLRG1 Pleiotropic regulator 1 yes yes 3;4 3.3079E-11 99.366 By MS/MS By MS/MS 3.75 0.433 1 3 3 1 39093000 0 22685000 16408000 5504 205 5732 23082;23083;23084;23085 19441;19442;19443 19442 3 0 7665100 2680000 HPGSFDVVHVK GANLGRIGVITNRERHPGSFDVVHVKDANG NRERHPGSFDVVHVKDANGNSFATRLSNIF R H P V K D 0 0 0 1 0 0 0 1 2 0 0 1 0 1 1 1 0 0 0 3 0 0 11 0 1220.6302 P62701;P22090 P62701 201 211 RPS4X;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1 yes no 2;3 3.918E-05 146.69 By matching By MS/MS By MS/MS 6.27 2.54 2 1 1 4 3 2 2 1 6 8 632650000 96965000 167340000 368340000 5505 1029 5733 23086;23087;23088;23089;23090;23091;23092;23093;23094;23095;23096;23097;23098;23099;23100 19444;19445;19446;19447;19448;19449;19450;19451;19452 19449 9 116830000 95420000 67927000 HPGYSTQTHVNDLMLVK GDRRAQRIKASKSFRHPGYSTQTHVNDLML GYSTQTHVNDLMLVKLNSQARLSSMVKKVR R H P V K L 0 0 1 1 0 1 0 1 2 0 2 1 1 0 1 1 2 0 1 2 0 0 17 0 1938.9622 P49862 P49862 101 117 KLK7 Kallikrein-7 yes yes 3 1.7873E-06 146.78 By MS/MS 5.56 3.02 1 1 1 1 1 1 1 1 1 9 50382000 50382000 0 0 5506 872 5734 23101;23102;23103;23104;23105;23106;23107;23108;23109 19453;19454;19455;19456;19457 19453 5 57161000 0 0 HPHDIIDDINSGAVECPAS ILGTAQSVGCNVDGRHPHDIIDDINSGAVE IIDDINSGAVECPAS_______________ R H P A S - 2 0 1 3 1 0 1 1 2 3 0 0 0 0 2 2 0 0 0 1 0 0 19 0 2045.9113 P30050 P30050 147 165 RPL12 60S ribosomal protein L12 yes yes 2;3 1.9701E-40 208.74 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 127650000 93751000 0 33899000 5507 708 5735 23110;23111;23112;23113;23114;23115 19458;19459;19460;19461;19462 19461 5 85368000 0 5476700 HPLTQELK HLSRDIDVIRGNIVKHPLTQELKECEGIVP IRGNIVKHPLTQELKECEGIVPVPLAEKLY K H P L K E 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 0 1 0 0 0 0 0 8 0 964.53418 P82932 P82932 96 103 MRPS6 28S ribosomal protein S6, mitochondrial yes yes 2 0.0014063 116.25 By MS/MS 9 0 1 1 1657400 0 0 1657400 5508 1103 5736 23116 19463 19463 1 0 0 529440 HPMDLSTVK DASALGLHDYHDIIKHPMDLSTVKRKMENR YHDIIKHPMDLSTVKRKMENRDYRDAQEFA K H P V K R 0 0 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 9 0 1026.5168 Q15059;P25440 P25440 392 400 BRD3;BRD2 Bromodomain-containing protein 3;Bromodomain-containing protein 2 no no 2 0.0038336 99.136 By matching By MS/MS 2 0 2 1 1 15577000 3181400 0 12396000 5509 658;1342 5737 23117;23118 19464 19464 1 3833200 0 2801200 HPNIVSLQDVLMQDSR PSTAIREISLLKELRHPNIVSLQDVLMQDS PNIVSLQDVLMQDSRLYLIFEFLSMDLKKY R H P S R L 0 1 1 2 0 2 0 0 1 1 2 0 1 0 1 2 0 0 0 2 0 0 16 0 1850.9309 P06493 P06493 60 75 CDK1 Cyclin-dependent kinase 1 yes yes 2;3 1.3855E-35 210.64 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 40121000 0 6385700 33735000 5510 443 5738 23119;23120;23121;23122 19465;19466;19467 19466 3 0 2210500 5136700 HPPAPAEPSSDLASK EWLQDLKEKGPTLLKHPPAPAEPSSDLASK HPPAPAEPSSDLASKLREAEETQSTLQAEC K H P S K L 3 0 0 1 0 0 1 0 1 0 1 1 0 0 4 3 0 0 0 0 0 0 15 0 1502.7365 Q9P2E9 Q9P2E9 1099 1113 RRBP1 Ribosome-binding protein 1 yes yes 2;3 3.2092E-07 164.9 By MS/MS 1.33 0.471 2 1 3 21496000 0 0 21496000 5511 2122 5739 23123;23124;23125 19468;19469 19468 2 0 0 4659000 HPPDEDFRGPPDEDFRHPPDEDFR PPQEHFRRSREEDFRHPPDEDFRGPPDEDF PPDEDFRHPPDEDFRSPQEEDFRCPSDEDF R H P F R S 0 3 0 6 0 0 3 1 2 0 0 0 0 3 6 0 0 0 0 0 0 0 24 2 2918.2644 Q8IXT5 Q8IXT5 805 828 RBM12B RNA-binding protein 12B yes yes 5 0.064815 24.459 By MS/MS 2 0 1 1 12853000 0 0 12853000 5512 1587 5740 23126 19470 19470 1 0 0 2904500 HPPGDEIYR SQTILRRHMAKCVWKHPPGDEIYRKGSISV AKCVWKHPPGDEIYRKGSISVFEVDGKKNK K H P Y R K 0 1 0 1 0 0 1 1 1 1 0 0 0 0 2 0 0 0 1 0 0 0 9 0 1082.5145 O95251 O95251 392 400 KAT7 Histone acetyltransferase KAT7 yes yes 2 0.0065334 94.302 By MS/MS 3 0 1 1 3507800 0 0 3507800 5513 316 5741 23127 19471 19471 1 0 0 680340 HPPPPPFQNQQR DGPQQRPPKPGGHHRHPPPPPFQNQQRPPR HHRHPPPPPFQNQQRPPRRGHRQLSLPRFP R H P Q R P 0 1 1 0 0 3 0 0 1 0 0 0 0 1 5 0 0 0 0 0 0 0 12 0 1441.7215 Q16378 Q16378 82 93 PRR4 Proline-rich protein 4 yes yes 3 0.022768 57.348 By MS/MS By matching 4.5 3.59 1 2 1 1 1 4 2 22024000 7697600 0 14326000 5514 1385 5742 23128;23129;23130;23131;23132;23133 19472;19473;19474 19474 0 8449300 0 3015200 HPPPPPFQNQQRPPR DGPQQRPPKPGGHHRHPPPPPFQNQQRPPR HPPPPPFQNQQRPPRRGHRQLSLPRFPSVS R H P P R R 0 2 1 0 0 3 0 0 1 0 0 0 0 1 7 0 0 0 0 0 0 0 15 1 1791.9281 Q16378 Q16378 82 96 PRR4 Proline-rich protein 4 yes yes 2;3;4 4.9845E-08 153.74 By MS/MS By matching 5.84 3.14 3 4 2 4 2 3 2 2 4 6 31 1 4201400000 4200800000 574200 0 5515 1385 5743 23134;23135;23136;23137;23138;23139;23140;23141;23142;23143;23144;23145;23146;23147;23148;23149;23150;23151;23152;23153;23154;23155;23156;23157;23158;23159;23160;23161;23162;23163;23164;23165 19475;19476;19477;19478;19479;19480;19481;19482;19483;19484;19485;19486;19487;19488;19489;19490;19491;19492;19493;19494;19495;19496;19497;19498;19499;19500;19501;19502;19503;19504;19505;19506;19507;19508;19509;19510;19511;19512;19513;19514;19515;19516;19517;19518;19519;19520;19521;19522;19523;19524;19525;19526;19527;19528;19529;19530;19531;19532;19533;19534;19535;19536;19537;19538;19539;19540;19541;19542;19543;19544;19545;19546;19547;19548;19549;19550;19551 19505 76 4676000000 2905000 0 HPPPPPFQNQQRPPRR DGPQQRPPKPGGHHRHPPPPPFQNQQRPPR PPPPPFQNQQRPPRRGHRQLSLPRFPSVSL R H P R R G 0 3 1 0 0 3 0 0 1 0 0 0 0 1 7 0 0 0 0 0 0 0 16 2 1948.0292 Q16378 Q16378 82 97 PRR4 Proline-rich protein 4 yes yes 4 0.015472 53.754 By MS/MS 10 0 1 1 1015700 1015700 0 0 5516 1385 5744 23166 19552 19552 1 1850400 0 0 HPQEQPLW LQEASSFFQRDRPARHPQEQPLW_______ QRDRPARHPQEQPLW_______________ R H P L W - 0 0 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 1 0 0 0 0 8 0 1033.4981 Q16378 Q16378 127 134 PRR4 Proline-rich protein 4 yes yes 2 0.0015557 114.19 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 1877000000 1877000000 0 0 5517 1385 5745 23167;23168;23169;23170;23171;23172;23173;23174;23175;23176 19553;19554;19555;19556;19557;19558;19559;19560;19561;19562;19563;19564;19565;19566;19567;19568;19569 19569 17 1909100000 0 0 HPQLLYESK NGEEVAVKLESQKARHPQLLYESKLYKILQ ESQKARHPQLLYESKLYKILQGGVGIPHIR R H P S K L 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 1 0 0 1 0 0 0 9 0 1113.5819 P48729;Q8N752 P48729 54 62 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 0.0025385 103.55 By MS/MS By matching 6 0 2 1 1 34116000 0 7508300 26608000 5518 847 5746 23177;23178 19570 19570 1 0 2599100 3980900 HPSAEQSSHIDVVR AVDSAMELLFLDTFKHPSAEQSSHIDVVRF KHPSAEQSSHIDVVRFPCVVYINEVRVIPP K H P V R F 1 1 0 1 0 1 1 0 2 1 0 0 0 0 1 3 0 0 0 2 0 0 14 0 1560.7645 Q69YN4 Q69YN4 17 30 KIAA1429 Protein virilizer homolog yes yes 3 0.00090885 88.507 By MS/MS 1 0 1 1 10566000 0 0 10566000 5519 1468 5747 23179 19571 19571 1 0 0 2276700 HPSKPDPSGECNPDLR TKTPSSDVLVFDYTKHPSKPDPSGECNPDL PSKPDPSGECNPDLRLRGHQKEGYGLSWNP K H P L R L 0 1 1 2 1 0 1 1 1 0 1 1 0 0 4 2 0 0 0 0 0 0 16 1 1804.8162 Q09028 Q09028 157 172 RBBP4 Histone-binding protein RBBP4 yes yes 3 2.6339E-05 102.38 By MS/MS 4.5 0.5 1 1 2 15809000 0 0 15809000 5520 1188 5748 23180;23181 19572;19573 19573 2 0 0 2268000 HPVLIFITEK DEEVIKWTKFFVVFRHPVLIFITEKHGNYF FVVFRHPVLIFITEKHGNYFAYVQMFNSRI R H P E K H 0 0 0 0 0 0 1 0 1 2 1 1 0 1 1 0 1 0 0 1 0 0 10 0 1195.6965 Q9H8H0 Q9H8H0 164 173 NOL11 Nucleolar protein 11 yes yes 2 0.0041884 99.688 By MS/MS 3 0 1 1 2994700 0 2994700 0 5521 1995 5749 23182 19574 19574 1 0 1276600 0 HPWDDISYVLPEHMSM GHYLDQKRLKQGLYRHPWDDISYVLPEHMS PWDDISYVLPEHMSM_______________ R H P S M - 0 0 0 2 0 0 1 0 2 1 1 0 2 0 2 2 0 1 1 1 0 0 16 0 1955.8546 P53396 P53396 1086 1101 ACLY ATP-citrate synthase yes yes 3 0.04156 38.995 By MS/MS 2 0 1 1 1629100 0 0 1629100 5522 919 5750 23183 19575 19575 1 0 0 368150 HPYFYAPELLFFAK EETFLKKYLYEIARRHPYFYAPELLFFAKR RHPYFYAPELLFFAKRYKAAFTECCQAADK R H P A K R 2 0 0 0 0 0 1 0 1 0 2 1 0 3 2 0 0 0 2 0 0 0 14 0 1741.8868 CON__P02768-1;P02768 CON__P02768-1 170 183 ALB Serum albumin yes no 2;3 5.4259E-45 219.03 By MS/MS 6.15 2.32 2 2 2 2 2 2 1 13 462780000 462780000 0 0 + 5523 44 5751 23184;23185;23186;23187;23188;23189;23190;23191;23192;23193;23194;23195;23196 19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586;19587;19588 19579 13 308040000 0 0 HPYFYAPELLYYANK EKKFWGKYLYEIARRHPYFYAPELLYYANK HPYFYAPELLYYANKYNGVFQECCQAEDKG R H P N K Y 2 0 1 0 0 0 1 0 1 0 2 1 0 1 2 0 0 0 4 0 0 0 15 0 1887.9196 CON__P02769 CON__P02769 169 183 yes yes 2;3 3.2467E-127 271.65 By MS/MS By MS/MS By MS/MS 4.42 2.48 3 3 4 4 2 3 2 1 1 1 12 3 9 385650000 246280000 29771000 109600000 + 5524 45 5752 23197;23198;23199;23200;23201;23202;23203;23204;23205;23206;23207;23208;23209;23210;23211;23212;23213;23214;23215;23216;23217;23218;23219;23220 19589;19590;19591;19592;19593;19594;19595;19596;19597;19598;19599;19600;19601;19602;19603;19604;19605;19606;19607;19608 19592 18 220690000 10638000 20503000 HQACLLLQK LPILVQHITGPVRPRHQACLLLQKTLSMRE GPVRPRHQACLLLQKTLSMREVRSCFEDPE R H Q Q K T 1 0 0 0 1 2 0 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1109.6015 Q9BQG0 Q9BQG0 1028 1036 MYBBP1A Myb-binding protein 1A yes yes 2 0.030726 77.072 By matching By MS/MS 1.5 0.5 1 1 1 1 4472200 0 1034600 3437600 5525 1885 5753 23221;23222 19609 19609 1 0 505710 776830 HQAFEAELHANADR ESYKDPTNIQSKHQKHQAFEAELHANADRI KHQAFEAELHANADRIRGVIDMGNSLIERG K H Q D R I 4 1 1 1 0 1 2 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 14 0 1607.7441 Q13813 Q13813 1592 1605 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3;4 9.639E-05 143.93 By MS/MS By MS/MS 1.2 0.4 4 1 1 4 159710000 0 26612000 133100000 5526 1268 5754 23223;23224;23225;23226;23227 19610;19611;19612;19613;19614 19614 5 0 13008000 28799000 HQAFEAELSANQSR EAYKDPSNLQGKVQKHQAFEAELSANQSRI KHQAFEAELSANQSRIDALEKAGQKLIDVN K H Q S R I 3 1 1 0 0 2 2 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 14 0 1586.7437 Q13813 Q13813 614 627 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.4615E-12 184.31 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 118860000 0 31537000 87322000 5527 1268 5755 23228;23229;23230;23231;23232 19615;19616;19617;19618;19619 19615 5 0 15415000 18901000 HQAFEAEVQANSGAIVK ENYKDPTNLQGKLQKHQAFEAEVQANSGAI AFEAEVQANSGAIVKLDETGNLMISEGHFA K H Q V K L 4 0 1 0 0 2 2 1 1 1 0 1 0 1 0 1 0 0 0 2 0 0 17 0 1797.901 Q13813 Q13813 85 101 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 4.831E-27 196.95 By MS/MS By MS/MS 1 0 3 1 2 39358000 0 14787000 24571000 5528 1268 5756 23233;23234;23235 19620;19621;19622 19622 3 0 7227700 5294200 HQAFMAELASNK MSYDEARNLHSKWLKHQAFMAELASNKEWL WLKHQAFMAELASNKEWLDKIEKEGMQLIS K H Q N K E 3 0 1 0 0 1 1 0 1 0 1 1 1 1 0 1 0 0 0 0 0 0 12 0 1345.6449 Q01082 Q01082 1316 1327 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.0001719 134.13 By MS/MS By MS/MS 1 0 2 1 1 23846000 0 5439100 18407000 5529 1128 5757 23236;23237 19623;19624 19624 2 0 2658500 3966200 HQAFMAELASNKEWLDKIEK MSYDEARNLHSKWLKHQAFMAELASNKEWL AELASNKEWLDKIEKEGMQLISEKPETEAV K H Q E K E 3 0 1 1 0 1 3 0 1 1 2 3 1 1 0 1 0 1 0 0 0 0 20 2 2387.1944 Q01082 Q01082 1316 1335 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 4 0.033757 36.663 By MS/MS 1 0 1 1 10312000 0 0 10312000 5530 1128 5758 23238 19625 19625 1 0 0 2221900 HQALQAEIAGHEPR NRGKDLIGVQNLLKKHQALQAEIAGHEPRI KHQALQAEIAGHEPRIKAVTQKGNAMVEEG K H Q P R I 3 1 0 0 0 2 2 1 2 1 1 0 0 0 1 0 0 0 0 0 0 0 14 0 1555.7855 Q13813 Q13813 826 839 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 8.076E-05 134.9 By MS/MS 1 0 1 1 20703000 0 20703000 0 5531 1268 5759 23239 19626 19626 1 0 10119000 0 HQEGEIFDTEK LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE RKPRHQEGEIFDTEKEKYEITEQRKIDQKA R H Q E K E 0 0 0 1 0 1 3 1 1 1 0 1 0 1 0 0 1 0 0 0 0 0 11 0 1331.5994 Q02878 Q02878 227 237 RPL6 60S ribosomal protein L6 yes yes 2 3.8374E-36 214.82 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 140820000 0 18003000 122810000 5532 1149 5760 23240;23241;23242;23243;23244 19627;19628;19629;19630;19631 19629 5 0 5918900 18288000 HQEGEIFDTEKEK LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE PRHQEGEIFDTEKEKYEITEQRKIDQKAVD R H Q E K Y 0 0 0 1 0 1 4 1 1 1 0 2 0 1 0 0 1 0 0 0 0 0 13 1 1588.7369 Q02878 Q02878 227 239 RPL6 60S ribosomal protein L6 yes yes 2;3 0.0010723 140.14 By matching By MS/MS 5.14 1.81 1 2 3 1 1 6 150870000 0 6391500 144480000 5533 1149 5761 23245;23246;23247;23248;23249;23250;23251 19632;19633;19634;19635;19636;19637 19637 6 0 2212500 21329000 HQEGEIFDTEKEKYEITEQR LTDAYFKKKKLRKPRHQEGEIFDTEKEKYE IFDTEKEKYEITEQRKIDQKAVDSQILPKI R H Q Q R K 0 1 0 1 0 2 6 1 1 2 0 2 0 1 0 0 2 0 1 0 0 0 20 2 2508.1769 Q02878 Q02878 227 246 RPL6 60S ribosomal protein L6 yes yes 4 4.9048E-58 224.56 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 72517000 0 30568000 41949000 5534 1149 5762 23252;23253;23254;23255;23256 19638;19639;19640;19641 19639 4 0 10004000 6237100 HQEHKGEIDAHEDSFK ELASDVAGAEALLDRHQEHKGEIDAHEDSF QEHKGEIDAHEDSFKSADESGQALLAAGHY R H Q F K S 1 0 0 2 0 1 3 1 3 1 0 2 0 1 0 1 0 0 0 0 0 0 16 1 1905.8606 Q13813 Q13813 403 418 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3;4 0.0010458 82.259 By MS/MS By MS/MS 1.67 0.745 3 2 1 1 5 17012000 0 1607000 15405000 5535 1268 5763 23257;23258;23259;23260;23261;23262 19642;19643;19644;19645 19645 4 0 785500 3315700 HQEYLNSILQHAK EKQQKIEQERKRRQKHQEYLNSILQHAKDF QKHQEYLNSILQHAKDFKEYHRSVTGKIQK K H Q A K D 1 0 1 0 0 2 1 0 2 1 2 1 0 0 0 1 0 0 1 0 0 0 13 0 1579.8107 P51531;P51532 P51532 472 484 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 3 0.0061921 73.877 By MS/MS By matching 1.5 0.5 1 1 1 1 10829000 0 4673000 6156000 5536 894;893 5764 23263;23264 19646 19646 1 0 2284100 1391100 HQFAWPFR QLQYLHKVVMKALWKHQFAWPFRQPVDAVK VMKALWKHQFAWPFRQPVDAVKLGLPDYHK K H Q F R Q 1 1 0 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 8 0 1087.5352 P25440 P25440 93 100 BRD2 Bromodomain-containing protein 2 yes yes 2 0.002741 107.43 By MS/MS By MS/MS 2 0 2 1 1 13664000 0 2683300 10980000 5537 658 5765 23265;23266 19647;19648 19648 2 0 1208300 2481300 HQFAWPFYQPVDAIK QLQYMQNVVVKTLWKHQFAWPFYQPVDAIK HQFAWPFYQPVDAIKLNLPDYHKIIKNPMD K H Q I K L 2 0 0 1 0 2 0 0 1 1 0 1 0 2 2 0 0 1 1 1 0 0 15 0 1845.9202 Q15059 Q15059 53 67 BRD3 Bromodomain-containing protein 3 yes yes 2;3 0.028313 62.408 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 28720000 0 2891400 25829000 5538 1342 5766 23267;23268;23269;23270 19649;19650;19651 19649 3 0 1302000 5681600 HQGLPQEVLNENLLR ______________________________ HQGLPQEVLNENLLRFFVAPFPEVFGKEKV K H Q L R F 0 1 2 0 0 2 2 1 1 0 4 0 0 0 1 0 0 0 0 1 0 0 15 0 1758.9377 CON__P02662 CON__P02662 8 22 yes yes 2;3 3.5193E-05 160.38 By MS/MS By matching 5 3.23 2 1 2 1 1 1 1 8 1 96931000 95911000 1019800 0 + 5539 39 5767 23271;23272;23273;23274;23275;23276;23277;23278;23279 19652;19653;19654;19655;19656;19657;19658;19659 19654 7 95224000 338440 0 HQGVMVGMGQK DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV GRPRHQGVMVGMGQKDSYVGDEAQSKRGIL R H Q Q K D 0 0 0 0 0 2 0 3 1 0 0 1 2 0 0 0 0 0 0 2 0 0 11 0 1170.5638 P60709;P63261;P68032;P63267;P68133;P62736;Q562R1 P60709 40 50 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 2 1.736E-73 241.96 By MS/MS By MS/MS By MS/MS 4.35 1.71 2 2 3 3 7 4 2 2 13 8 1076800000 14080000 488110000 574650000 5540 966;1069;1075;1430 5768;5769 23280;23281;23282;23283;23284;23285;23286;23287;23288;23289;23290;23291;23292;23293;23294;23295;23296;23297;23298;23299;23300;23301;23302 19660;19661;19662;19663;19664;19665;19666;19667;19668;19669;19670;19671;19672;19673;19674;19675;19676;19677;19678;19679;19680;19681;19682;19683;19684 19669 465;466 24 11280000 139230000 83162000 HQGVMVGMGQKDSYVGDEAQSK DAPRAVFPSIVGRPRHQGVMVGMGQKDSYV MGQKDSYVGDEAQSKRGILTLKYPIEHGIV R H Q S K R 1 0 0 2 0 3 1 4 1 0 0 2 2 0 0 2 0 0 1 3 0 0 22 1 2350.0682 P60709;P63261;P68032;P63267;P68133;P62736 P60709 40 61 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle no no 4 0.0013148 57.826 By MS/MS 5 0 1 1 4682300 0 4682300 0 5541 966;1069;1075 5770 23303 19685 19685 1 0 1206900 0 HQHMHDRDDLYAEQMER QFYTEVGEITTDLGKHQHMHDRDDLYAEQM HMHDRDDLYAEQMEREMRHKLKTAFKNFIE K H Q E R E 1 2 0 3 0 2 2 0 3 0 1 0 2 0 0 0 0 0 1 0 0 0 17 1 2209.9382 Q9Y5B9 Q9Y5B9 754 770 SUPT16H FACT complex subunit SPT16 yes yes 3;4;5 1.9597E-06 122.14 By MS/MS 1.67 0.745 3 2 1 6 31672000 0 0 31672000 5542 2296 5771;5772 23304;23305;23306;23307;23308;23309 19686;19687;19688 19687 740 3 0 0 6940800 HQILEQAVEDYAETVHQLSK EKAKDEQSAVSMLKKHQILEQAVEDYAETV QAVEDYAETVHQLSKTSRALVADSHPESER K H Q S K T 2 0 0 1 0 3 3 0 2 1 2 1 0 0 0 1 1 0 1 2 0 0 20 0 2337.1601 Q01082 Q01082 1634 1653 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 1.5253E-28 188.56 By MS/MS 1 0 1 1 25641000 0 0 25641000 5543 1128 5773 23310 19689 19689 1 0 0 5524700 HQLASISSPVVTSLLINLGSPVK YVGCAMLSSQKTQCKHQLASISSPVVTSLL PVVTSLLINLGSPVKEVRRAAIQCLQALSG K H Q V K E 1 0 1 0 0 1 0 1 1 2 4 1 0 0 2 5 1 0 0 3 0 0 23 0 2359.3475 Q9H583 Q9H583 910 932 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3 1.4639E-20 140.45 By MS/MS 1 0 1 1 13899000 0 0 13899000 5544 1984 5774 23311 19690 19690 1 0 0 2994700 HQLLEADISAHEDR DYGKDLASVNNLLKKHQLLEADISAHEDRL KHQLLEADISAHEDRLKDLNSQADSLMTSS K H Q D R L 2 1 0 2 0 1 2 0 2 1 2 0 0 0 0 1 0 0 0 0 0 0 14 0 1632.7856 Q13813 Q13813 1700 1713 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.0048038 71.354 By MS/MS 1.5 0.5 1 1 2 32988000 0 0 32988000 5545 1268 5775 23312;23313 19691;19692 19692 1 0 0 7166200 HQLLEADISAHEDRLK DYGKDLASVNNLLKKHQLLEADISAHEDRL QLLEADISAHEDRLKDLNSQADSLMTSSAF K H Q L K D 2 1 0 2 0 1 2 0 2 1 3 1 0 0 0 1 0 0 0 0 0 0 16 1 1873.9646 Q13813 Q13813 1700 1715 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 0.0015777 74.786 By MS/MS 1 0 1 1 9759500 0 0 9759500 5546 1268 5776 23314 19693 19693 1 0 0 2102800 HQLNELGSESAK FGDDDEIPQELLLGKHQLNELGSESAKIKA LGKHQLNELGSESAKIKAMGIMDKLSTDKT K H Q A K I 1 0 1 0 0 1 2 1 1 0 2 1 0 0 0 2 0 0 0 0 0 0 12 0 1311.6419 Q6KC79 Q6KC79 1236 1247 NIPBL Nipped-B-like protein yes yes 2 2.2631E-34 206.97 By MS/MS By MS/MS 1 0 2 1 1 9022200 0 2031200 6991000 5547 1480 5777 23315;23316 19694;19695 19694 2 0 992820 1506300 HQNTEVVLYLAR SAVQMYENCLRKFYKHQNTEVVLYLARALF FYKHQNTEVVLYLARALFKCGKLQECKQTL K H Q A R A 1 1 1 0 0 1 1 0 1 0 2 0 0 0 0 0 1 0 1 2 0 0 12 0 1441.7678 Q6PD62 Q6PD62 714 725 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 3 0.003034 87.026 By MS/MS 2 0 1 1 3178700 0 0 3178700 5548 1494 5778 23317 19696 19696 1 0 0 718310 HQNVQLPR GHKLHGKPIRITLSKHQNVQLPREGQEDQG IRITLSKHQNVQLPREGQEDQGLTKDYGNS K H Q P R E 0 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 8 0 990.53591 P26599 P26599 411 418 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2 1.8416E-13 175.75 By MS/MS By MS/MS 4.5 1.5 2 2 1 1 2 4 47525000 0 27347000 20177000 5549 671 5779 23318;23319;23320;23321;23322;23323 19697;19698;19699;19700;19701;19702 19701 6 0 9075600 3339600 HQPQEFPTYVEPTNDEICEAFR TKEGLERKLCMAALKHQPQEFPTYVEPTND TYVEPTNDEICEAFRKDPKEYANQFMWEYS K H Q F R K 1 1 1 1 1 2 4 0 1 1 0 0 0 2 3 0 2 0 1 1 0 0 22 0 2706.202 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229;P02774 P02774 128 149 GC Vitamin D-binding protein no no 3 5.3561E-07 83.064 By MS/MS 9 0 1 1 2441700 2441700 0 0 + 5550 397;26 5780 23324 19703 19703 1 1370500 0 0 HQQLLEEK KQTKVEGELEEMERKHQQLLEEKNILAEQL LEEMERKHQQLLEEKNILAEQLQAETELFA K H Q E K N 0 0 0 0 0 2 2 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 8 0 1023.5349 P35580 P35580 882 889 MYH10 Myosin-10 yes yes 2 0.0045002 101.43 By MS/MS 1 0 1 1 1240900 0 1240900 0 5551 753 5781 23325 19704 19704 1 0 606550 0 HQSFVLVGETGSGK PVWEYKDRFTDILVRHQSFVLVGETGSGKT RHQSFVLVGETGSGKTTQIPQWCVEYMRSL R H Q G K T 0 0 0 0 0 1 1 3 1 0 1 1 0 1 0 2 1 0 0 2 0 0 14 0 1444.731 O43143 O43143 153 166 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 1.1149E-24 198.14 By matching By MS/MS By MS/MS 2.5 1.05 3 4 4 3 1 5 8 176500000 33050000 34675000 108770000 5552 186 5782 23326;23327;23328;23329;23330;23331;23332;23333;23334;23335;23336;23337;23338;23339 19705;19706;19707;19708;19709;19710;19711;19712;19713 19712 8 33050000 14851000 21686000 HQTLQGLAFPLQPEAQR IRINEVKTEISVESKHQTLQGLAFPLQPEA TLQGLAFPLQPEAQRALQQLKQKMVNYIQM K H Q Q R A 2 1 0 0 0 4 1 1 1 0 3 0 0 1 2 0 1 0 0 0 0 0 17 0 1933.017 Q6IBS0 Q6IBS0 172 188 TWF2 Twinfilin-2 yes yes 3 0.0073853 55.322 By MS/MS 6 0 1 1 3593200 0 3593200 0 5553 1477 5783 23340 19714 19714 1 0 1243800 0 HQTLQGVAFPISR IKINEVQTDVGVDTKHQTLQGVAFPISREA TKHQTLQGVAFPISREAFQALEKLNNRQLN K H Q S R E 1 1 0 0 0 2 0 1 1 1 1 0 0 1 1 1 1 0 0 1 0 0 13 0 1452.7837 Q12792 Q12792 172 184 TWF1 Twinfilin-1 yes yes 2;3 4.8162E-05 158.42 By MS/MS By MS/MS 5.5 0.764 1 1 4 4 2 28440000 0 19893000 8547100 5554 1199 5784 23341;23342;23343;23344;23345;23346 19715;19716;19717 19716 3 0 6718100 1278700 HQVEQLSSSLK AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ QGLRHQVEQLSSSLKQKEQQLKEVAEKQEA R H Q L K Q 0 0 0 0 0 2 1 0 1 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1254.6568 Q14980 Q14980 551 561 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 8.3037E-47 223.14 By MS/MS By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 118950000 8678200 29396000 80880000 5555 1327 5785 23347;23348;23349;23350 19718;19719;19720 19719 3 8678200 14368000 17451000 HQVIQTVHPVEK KGPISDALAHHLRERHQVIQTVHPVEKKLT RERHQVIQTVHPVEKKLTYKCIHCLGVYTS R H Q E K K 0 0 0 0 0 2 1 0 2 1 0 1 0 0 1 0 1 0 0 3 0 0 12 0 1413.7728 Q9H2P0 Q9H2P0 647 658 ADNP Activity-dependent neuroprotector homeobox protein yes yes 3 1.2198E-05 142.83 By matching By MS/MS 1.33 0.471 2 1 1 2 15110000 0 1092000 14018000 5556 1975 5786 23351;23352;23353 19721;19722 19722 2 0 533770 3112600 HQVSVEGTNQTDVK EKEVPPGSAIIHIKKHQVSVEGTNQTDVKA KHQVSVEGTNQTDVKAVGGPAKLLVVSLEE K H Q V K A 0 0 1 1 0 2 1 1 1 0 0 1 0 0 0 1 2 0 0 3 0 0 14 0 1540.7481 Q14676 Q14676 541 554 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 0.00017208 140.24 By MS/MS 1 0 2 2 10824000 0 0 10824000 5557 1310 5787 23354;23355 19723;19724 19723 2 0 0 2332200 HQYINEDEYEVNLK KEFEKFKFAIVMMGRHQYINEDEYEVNLKD RHQYINEDEYEVNLKDFEPQPGNMSHPRPW R H Q L K D 0 0 2 1 0 1 3 0 1 1 1 1 0 0 0 0 0 0 2 1 0 0 14 0 1792.8268 Q93009 Q93009 1048 1061 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 2.6032E-07 168.98 By MS/MS 2 0 1 1 5092700 0 0 5092700 5558 1738 5788 23356 19725 19725 1 0 0 1150900 HRDYETATLSDIK SIHEAWTDGKEAMLKHRDYETATLSDIKAL LKHRDYETATLSDIKALIRKHEAFESDLAA K H R I K A 1 1 0 2 0 0 1 0 1 1 1 1 0 0 0 1 2 0 1 0 0 0 13 1 1547.758 O43707 O43707 438 450 ACTN4 Alpha-actinin-4 yes yes 2;3 9.3822E-05 136.01 By MS/MS By MS/MS 2.2 0.4 4 1 2 3 111180000 0 42242000 68939000 5559 210 5789 23357;23358;23359;23360;23361 19726;19727;19728;19729 19726 4 0 19022000 15089000 HRLDLGEDYPSGK ______________________________ KRHRLDLGEDYPSGKKRAGTDGKDRDRDRD R H R G K K 0 1 0 2 0 0 1 2 1 0 2 1 0 0 1 1 0 0 1 0 0 0 13 1 1485.7212 O43143 O43143 5 17 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 0.0043578 78.814 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 33138000 0 9435500 23703000 5560 186 5790 23362;23363;23364;23365 19730;19731 19731 2 0 4248900 4856300 HRPDLIDFDK TSWRDGMAFNALIHKHRPDLIDFDKLKKSN ALIHKHRPDLIDFDKLKKSNAHYNLQNAFN K H R D K L 0 1 0 3 0 0 0 0 1 1 1 1 0 1 1 0 0 0 0 0 0 0 10 1 1254.6357 Q01082;P11277 Q01082 215 224 SPTBN1;SPTB Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic yes no 3 0.01505 68.786 By MS/MS 1 0 1 1 28901000 0 0 28901000 5561 1128 5791 23366 19732 19732 1 0 0 6227200 HRPECITFQQIK ATEEARNLAFSLMTRHRPECITFQQIKDNC MTRHRPECITFQQIKDNCANELDLLAQKYS R H R I K D 0 1 0 0 1 2 1 0 1 2 0 1 0 1 1 0 1 0 0 0 0 0 12 1 1555.7929 P03243 P03243 127 138 yes yes 2;3 0.0025202 119.53 By MS/MS By MS/MS 4.22 1.93 2 2 3 1 1 1 8 236070000 0 8503500 227570000 5562 406 5792 23367;23368;23369;23370;23371;23372;23373;23374;23375 19733;19734;19735;19736;19737;19738;19739 19736 7 0 2191900 43039000 HRPELIDYGK ISWKDGLGFCALIHRHRPELIDYGKLRKDD ALIHRHRPELIDYGKLRKDDPLTNLNTAFD R H R G K L 0 1 0 1 0 0 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 0 10 1 1226.6408 P12814 P12814 186 195 ACTN1 Alpha-actinin-1 yes yes 3 9.6025E-05 118.23 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 29803000 0 17251000 12552000 5563 540 5793 23376;23377;23378 19740;19741 19740 2 0 7768200 2819900 HRPELIEYDK ISWKDGLAFNALIHRHRPELIEYDKLRKDD ALIHRHRPELIEYDKLRKDDPVTNLNNAFE R H R D K L 0 1 0 1 0 0 2 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 10 1 1298.6619 O43707 O43707 205 214 ACTN4 Alpha-actinin-4 yes yes 2;3 0.00077382 137.46 By matching By MS/MS By MS/MS 2 0 5 2 1 2 81174000 10958000 27106000 43110000 5564 210 5794 23379;23380;23381;23382;23383 19742;19743;19744 19742 3 13203000 12206000 9742100 HRPELIEYDKLR ISWKDGLAFNALIHRHRPELIEYDKLRKDD IHRHRPELIEYDKLRKDDPVTNLNNAFEVA R H R L R K 0 2 0 1 0 0 2 0 1 1 2 1 0 0 1 0 0 0 1 0 0 0 12 2 1567.8471 O43707 O43707 205 216 ACTN4 Alpha-actinin-4 yes yes 3 0.055192 48.277 By MS/MS 2 0 1 1 5654500 0 5654500 0 5565 210 5795 23384 19745 19745 0 0 2546300 0 HSEAATAQREEWK SKNEEDEGHSNSSPRHSEAATAQREEWKMF PRHSEAATAQREEWKMFIGGLSWDTTKKDL R H S W K M 3 1 0 0 0 1 3 0 1 0 0 1 0 0 0 1 1 1 0 0 0 0 13 1 1541.7223 Q14103 Q14103 86 98 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 3 2.1447E-08 172.21 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 31581000 0 27106000 4475200 5566 1281 5796 23385;23386;23387;23388 19746;19747;19748 19746 3 0 7875000 624210 HSEAFEALQQK LKSDSHGPKEDGGFRHSEAFEALQQKSQGL GGFRHSEAFEALQQKSQGLDSRLQHVEDGV R H S Q K S 2 0 0 0 0 2 2 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1286.6255 Q07065 Q07065 395 405 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 2.1243E-36 215.93 By matching By MS/MS By MS/MS 3.2 0.4 4 1 1 1 3 35584000 804170 7785000 26994000 5567 1176 5797 23389;23390;23391;23392;23393 19749;19750;19751 19749 3 927840 3318700 5205900 HSGNITFDEIVNIAR LKEPPRDRKKQKNIKHSGNITFDEIVNIAR HSGNITFDEIVNIARQMRHRSLARELSGTI K H S A R Q 1 1 2 1 0 0 1 1 1 3 0 0 0 1 0 1 1 0 0 1 0 0 15 0 1684.8533 P30050 P30050 100 114 RPL12 60S ribosomal protein L12 yes yes 2;3 2.706E-224 319.81 By MS/MS By MS/MS By MS/MS 7.67 0.816 1 2 5 1 1 4 4 341060000 7503300 46452000 287110000 5568 708 5798 23394;23395;23396;23397;23398;23399;23400;23401;23402 19752;19753;19754;19755;19756;19757;19758;19759;19760;19761 19759 9 6441800 21196000 46569000 HSGPNSADSANDGFVR EVFKSHRTEMDWVLKHSGPNSADSANDGFV SGPNSADSANDGFVRLRGLPFGCTKEEIVQ K H S V R L 2 1 2 2 0 0 0 2 1 0 0 0 0 1 1 3 0 0 0 1 0 0 16 0 1629.7132 P52597 P52597 99 114 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2;3 1.0853E-128 276.41 By MS/MS By MS/MS By MS/MS 6.11 1.56 1 8 3 3 1 1 1 3 5 10 243080000 10963000 58415000 173700000 5569 910 5799 23403;23404;23405;23406;23407;23408;23409;23410;23411;23412;23413;23414;23415;23416;23417;23418;23419;23420 19762;19763;19764;19765;19766;19767;19768;19769;19770;19771;19772;19773;19774;19775 19769 14 8782500 16196000 28317000 HSIAQLDPEALGNIK GGGESLRLLASDLQRHSIAQLDPEALGNIK HSIAQLDPEALGNIKKLSNRLAQICSSIRT R H S I K K 2 0 1 1 0 1 1 1 1 2 2 1 0 0 1 1 0 0 0 0 0 0 15 0 1604.8522 Q53HL2 Q53HL2 249 263 CDCA8 Borealin yes yes 2;3 1.6409E-107 263.7 By matching By MS/MS 6 0 3 1 2 23481000 0 1167000 22314000 5570 1429 5800 23421;23422;23423 19776;19777 19776 2 0 403980 3338400 HSISGPISTSKPLTALSDK PMKTPPAAAVSPMQRHSISGPISTSKPLTA GPISTSKPLTALSDKRPNYGEIPVQEHLLR R H S D K R 1 0 0 1 0 0 0 1 1 2 2 2 0 0 2 5 2 0 0 0 0 0 19 1 1938.0422 Q69YQ0 Q69YQ0 886 904 SPECC1L Cytospin-A yes yes 3 7.9599E-05 92.217 By MS/MS 2 0 1 1 16352000 0 0 16352000 5571 1469 5801 23424 19778 19778 1 0 0 3695300 HSLAFVVR RRLEVKPHALELPDKHSLAFVVRIERIDGV ALELPDKHSLAFVVRIERIDGVSLLVQRTI K H S V R I 1 1 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 2 0 0 8 0 927.52904 Q6DKI1 Q6DKI1 94 101 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2 0.0001496 143.56 By MS/MS 6.5 0.5 1 1 2 61245000 0 0 61245000 5572 1471 5802 23425;23426 19779;19780 19780 2 0 0 9950200 HSLLQTLYK VTKPNSALESCSFARHSLLQTLYKV_____ SCSFARHSLLQTLYKV______________ R H S Y K V 0 0 0 0 0 1 0 0 1 0 3 1 0 0 0 1 1 0 1 0 0 0 9 0 1101.6182 P46060 P46060 578 586 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.0060933 95.09 By MS/MS 2.5 0.5 1 1 2 11255000 0 0 11255000 5573 822 5803 23427;23428 19781 19781 1 0 0 2233400 HSNSNSVDDTIVALNMR IAKPIPQTPESAGNKHSNSNSVDDTIVALN NSNSVDDTIVALNMRAALRNGLEGSSEETS K H S M R A 1 1 3 2 0 0 0 0 1 1 1 0 1 0 0 3 1 0 0 2 0 0 17 0 1871.8796 P52948 P52948 678 694 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 0.00085566 76.586 By MS/MS 2 0 1 1 8035900 0 0 8035900 5574 916 5804 23429 19782 19782 1 0 0 1816000 HSNVNLTIFTAR PCPDCAGEVAEFLARHSNVNLTIFTARLYY LARHSNVNLTIFTARLYYFQYPCYQEGLRS R H S A R L 1 1 2 0 0 0 0 0 1 1 1 0 0 1 0 1 2 0 0 1 0 0 12 0 1371.7259 Q96AK3;Q8IUX4;Q9NRW3 Q9NRW3 111 122 APOBEC3D;APOBEC3F;APOBEC3C DNA dC->dU-editing enzyme APOBEC-3D;DNA dC->dU-editing enzyme APOBEC-3F;DNA dC->dU-editing enzyme APOBEC-3C no no 2;3 1.5066E-05 154.94 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 38934000 0 13166000 25768000 5575 2046;1752 5805 23430;23431;23432;23433;23434 19783;19784 19784 2 0 7282600 4572400 HSPIAPSSPSPQVLAQK FSTPTGSRTDSQSVRHSPIAPSSPSPQVLA PIAPSSPSPQVLAQKYSLVAKQESVVRRAS R H S Q K Y 2 0 0 0 0 2 0 0 1 1 1 1 0 0 4 4 0 0 0 1 0 0 17 0 1742.9315 Q9NQS7 Q9NQS7 305 321 INCENP Inner centromere protein yes yes 2;3 7.3662E-05 77.124 By MS/MS 2 0 2 2 8952100 0 0 8952100 5576 2034 5806 23435;23436 19785;19786 19786 2 0 0 2023000 HSQAVEELAEQLEQTK EAKTHEAQIQEMRQKHSQAVEELAEQLEQT SQAVEELAEQLEQTKRVKANLEKAKQTLEN K H S T K R 2 0 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16 0 1838.901 P35579 P35579 1194 1209 MYH9 Myosin-9 yes yes 2;3 5.372E-91 257.22 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 32598000 0 6629800 25969000 5577 752 5807 23437;23438;23439;23440;23441 19787;19788;19789 19788 3 0 3240600 5655100 HSQAVEELAEQLEQTKR EAKTHEAQIQEMRQKHSQAVEELAEQLEQT QAVEELAEQLEQTKRVKANLEKAKQTLENE K H S K R V 2 1 0 0 0 3 4 0 1 0 2 1 0 0 0 1 1 0 0 1 0 0 17 1 1995.0021 P35579 P35579 1194 1210 MYH9 Myosin-9 yes yes 3;4 1.4653E-06 143.46 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 102000000 0 24157000 77840000 5578 752 5808 23442;23443;23444;23445;23446 19790;19791;19792;19793;19794 19792 5 0 11565000 16865000 HSQFIGYPITLFVEK TEYLEERRIKEIVKKHSQFIGYPITLFVEK HSQFIGYPITLFVEKERDKEVSDDEAEEKE K H S E K E 0 0 0 0 0 1 1 1 1 2 1 1 0 2 1 1 1 0 1 1 0 0 15 0 1777.9403 P07900;Q58FG0 P07900 210 224 HSP90AA1;HSP90AA5P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5 yes no 3 0.024613 49.343 By matching By MS/MS 2.5 0.5 1 1 1 1 7082500 0 1168900 5913600 5579 466 5809 23447;23448 19795 19795 1 0 526390 1146900 HSQFLGYPITLYLEK TEYLEEMQVKEVVEKHSQFLGYPITLYLEK HSQFLGYPITLYLEKEREKEISDGKAEEEK K H S E K E 0 0 0 0 0 1 1 1 1 1 3 1 0 1 1 1 1 0 2 0 0 0 15 0 1807.9509 Q58FF8 Q58FF8 127 141 HSP90AB2P Putative heat shock protein HSP 90-beta 2 yes yes 2;3 0.0003259 133.88 By matching By MS/MS By MS/MS 4.62 1.65 4 3 1 1 2 5 28371000 1785300 3476400 23110000 5580 1431 5810 23449;23450;23451;23452;23453;23454;23455;23456 19796;19797;19798;19799;19800;19801 19797 6 2059800 1302200 4164800 HSQYHVDGSLEK DHYKAKATRHIFLIRHSQYHVDGSLEKDRT LIRHSQYHVDGSLEKDRTLTPLGREQAELT R H S E K D 0 0 0 1 0 1 1 1 2 0 1 1 0 0 0 2 0 0 1 1 0 0 12 0 1398.6528 Q96HS1 Q96HS1 105 116 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2;3 3.1854E-05 133.98 By matching By MS/MS 6.17 0.373 5 1 2 4 51365000 0 3626800 47739000 5581 1796 5811 23457;23458;23459;23460;23461;23462 19802;19803;19804 19802 3 0 1255500 7306200 HSQYHVDGSLEKDR DHYKAKATRHIFLIRHSQYHVDGSLEKDRT RHSQYHVDGSLEKDRTLTPLGREQAELTGL R H S D R T 0 1 0 2 0 1 1 1 2 0 1 1 0 0 0 2 0 0 1 1 0 0 14 1 1669.7808 Q96HS1 Q96HS1 105 118 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 4 9.7307E-05 138.19 By MS/MS By MS/MS 6 0 2 1 1 14647000 0 2469100 12177000 5582 1796 5812 23463;23464 19805;19806 19806 2 0 854720 1821900 HSSLAGCQIINYR WSMEGESQPVKMFDRHSSLAGCQIINYRTD DRHSSLAGCQIINYRTDAKQKWLLLTGISA R H S Y R T 1 1 1 0 1 1 0 1 1 2 1 0 0 0 0 2 0 0 1 0 0 0 13 0 1517.7409 Q00610 Q00610 145 157 CLTC Clathrin heavy chain 1 yes yes 3 4.3262E-05 147.26 By MS/MS 1 0 1 1 25568000 0 0 25568000 5583 1125 5813 23465 19807 19807 1 0 0 5509000 HSSLITPLQAVAQR YRSYRHGDLPDIQIKHSSLITPLQAVAQRD KHSSLITPLQAVAQRDPIIAKQLFSSLFSG K H S Q R D 2 1 0 0 0 2 0 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 14 0 1519.8471 P78527 P78527 2787 2800 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.9552E-45 224.75 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 39606000 0 5652300 33954000 5584 1089 5814 23466;23467;23468;23469 19808;19809;19810 19809 3 0 2762800 7342900 HSSTEVLLSVTGEQYGRPISGQK CNGPYWVRDGEVRFKHSSTEVLLSVTGEQY SVTGEQYGRPISGQKEVHGMAQPSQNNYWK K H S Q K E 0 1 0 0 0 2 2 3 1 1 2 1 0 0 1 4 2 0 1 2 0 0 23 1 2472.2609 Q99470 Q99470 152 174 SDF2 Stromal cell-derived factor 2 yes yes 3;4 4.9529E-10 97.57 By MS/MS 7 0 2 2 17773000 0 0 17773000 5585 1844 5815 23470;23471 19811;19812 19811 2 0 0 3153600 HSSVYPTQEELEAVQNMVSHTER PMRIFVNDDRHVMAKHSSVYPTQEELEAVQ EELEAVQNMVSHTERALKAVSDWIDEQEKG K H S E R A 1 1 1 0 0 2 4 0 2 0 1 0 1 0 1 3 2 0 1 3 0 0 23 0 2670.2344 Q12906 Q12906 18 40 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 1.0302E-149 276.69 By MS/MS By MS/MS 3.62 2 2 4 4 2 2 2 4 12 274870000 0 51446000 223420000 5586 1211 5816 23472;23473;23474;23475;23476;23477;23478;23479;23480;23481;23482;23483;23484;23485;23486;23487 19813;19814;19815;19816;19817;19818;19819;19820;19821;19822;19823;19824;19825;19826;19827;19828;19829 19822 16 0 22967000 46256000 HSSWSEGEEHGYSSGHSR EEDEEDTPGHKSGYRHSSWSEGEEHGYSSG WSEGEEHGYSSGHSRGTVKCRHGSNSRRLG R H S S R G 0 1 0 0 0 0 3 3 3 0 0 0 0 0 0 6 0 1 1 0 0 0 18 0 2014.8154 CON__Q5D862;Q5D862 CON__Q5D862 131 148 FLG2 Filaggrin-2 yes no 4 3.8008E-09 119.23 By MS/MS By matching By MS/MS 5.37 3.1 3 2 1 2 2 2 1 1 3 2 9 1 9 38474000 16944000 710160 20820000 + 5587 90 5817 23488;23489;23490;23491;23492;23493;23494;23495;23496;23497;23498;23499;23500;23501;23502;23503;23504;23505;23506 19830;19831;19832;19833;19834;19835;19836;19837;19838;19839;19840;19841;19842;19843 19837 14 14082000 347120 4963400 HSTIFENLANK FKCLKDGAGDVAFVKHSTIFENLANKADRD AFVKHSTIFENLANKADRDQYELLCLDNTR K H S N K A 1 0 2 0 0 0 1 0 1 1 1 1 0 1 0 1 1 0 0 0 0 0 11 0 1272.6463 P02787 P02787 226 236 TF Serotransferrin yes yes 2 2.4789E-197 306.19 By MS/MS By matching 4.78 3.26 2 1 1 1 1 1 1 1 7 2 223570000 215940000 0 7630600 5588 399 5818 23507;23508;23509;23510;23511;23512;23513;23514;23515 19844;19845;19846;19847;19848;19849 19847 6 156220000 0 1676100 HSVDLIGRPFGSK VQRGAQTQTRHGVLRHSVDLIGRPFGSKVT LRHSVDLIGRPFGSKVTCGRGGWVYVLHPT R H S S K V 0 1 0 1 0 0 0 2 1 1 1 1 0 1 1 2 0 0 0 1 0 0 13 1 1411.7572 Q96FX7 Q96FX7 45 57 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 3 0.0019434 90.689 By MS/MS 6 0.816 1 1 1 3 11698000 0 11698000 0 5589 1785 5819 23516;23517;23518 19850 19850 1 0 4014200 0 HSVGVVIGR YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK DVPVPRHSVGVVIGRSGEMIKKIQNDAGVR R H S G R S 0 1 0 0 0 0 0 2 1 1 0 0 0 0 0 1 0 0 0 3 0 0 9 0 922.53485 Q92945 Q92945 332 340 KHSRP Far upstream element-binding protein 2 yes yes 2 0.0053104 96.492 By matching By MS/MS By MS/MS 2.71 1.39 2 1 2 1 1 1 3 3 60881000 5686300 19268000 35927000 5590 1733 5820 23519;23520;23521;23522;23523;23524;23525 19851;19852;19853 19852 3 5686300 8582500 6816400 HSVHTLVFR ______________________________ VEEVQKHSVHTLVFRSLKRTHDMFVADNGK K H S F R S 0 1 0 0 0 0 0 0 2 0 1 0 0 1 0 1 1 0 0 2 0 0 9 0 1094.5985 O43660 O43660 8 16 PLRG1 Pleiotropic regulator 1 yes yes 2 0.00013461 113.5 By MS/MS 4 0 1 1 0 0 0 0 5591 205 5821 23526 19854 19854 1 0 0 0 HTAMVSWGGVSIPNSPFR NGTYSCSYVPRKPVKHTAMVSWGGVSIPNS MVSWGGVSIPNSPFRVNVGAGSHPNKVKVY K H T F R V 1 1 1 0 0 0 0 2 1 1 0 0 1 1 2 3 1 1 0 2 0 0 18 0 1941.952 P21333 P21333 743 760 FLNA Filamin-A yes yes 3 1.9015E-09 150.01 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 10299000 0 3929800 6369400 5592 623 5822;5823 23527;23528;23529 19855;19856 19856 275 2 0 1872600 1372400 HTDNVIQWLNAMDEIGLPK DREQTRYKATGLHFRHTDNVIQWLNAMDEI VIQWLNAMDEIGLPKIFYPETTDIYDRKNM R H T P K I 1 0 2 2 0 1 1 1 1 2 2 1 1 0 1 0 1 1 0 1 0 0 19 0 2193.0888 P46940 P46940 112 130 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 5.4365E-05 93.381 By MS/MS 1 0 1 1 3998400 0 0 3998400 5593 835 5824 23530 19857 19857 1 0 0 861520 HTDVQFYTEVGEITTDLGK LHFHLKNAIMFGKKRHTDVQFYTEVGEITT QFYTEVGEITTDLGKHQHMHDRDDLYAEQM R H T G K H 0 0 0 2 0 1 2 2 1 1 1 1 0 1 0 0 4 0 1 2 0 0 19 0 2152.0324 Q9Y5B9 Q9Y5B9 735 753 SUPT16H FACT complex subunit SPT16 yes yes 2;3 1.9069E-205 304.28 By MS/MS 1.67 0.471 1 2 3 42764000 0 0 42764000 5594 2296 5825 23531;23532;23533 19858;19859;19860 19859 3 0 0 9598400 HTEMITTLK DELASLQVTMQQAQKHTEMITTLKKIRRFK MQQAQKHTEMITTLKKIRRFKVSQVIMEKS K H T L K K 0 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 3 0 0 0 0 0 9 0 1072.5587 O75475 O75475 393 401 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.00035941 138.4 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 55442000 0 10906000 44536000 5595 262 5826 23534;23535;23536 19861;19862 19862 2 0 4485300 8637900 HTEMITTLKK DELASLQVTMQQAQKHTEMITTLKKIRRFK QQAQKHTEMITTLKKIRRFKVSQVIMEKST K H T K K I 0 0 0 0 0 0 1 0 1 1 1 2 1 0 0 0 3 0 0 0 0 0 10 1 1200.6536 O75475 O75475 393 402 PSIP1 PC4 and SFRS1-interacting protein yes yes 3 0.062695 40.496 By MS/MS 3 0 1 1 2538500 0 2538500 0 5596 262 5827 23537 19863 19863 1 0 1082200 0 HTFMGVVSLGSPSGEVSHPR APPGHQLHRAHYDLRHTFMGVVSLGSPSGE VVSLGSPSGEVSHPRKTRTVVQPSVGAAAG R H T P R K 0 1 0 0 0 0 1 3 2 0 1 0 1 1 2 4 1 0 0 3 0 0 20 0 2080.016 P02765 P02765 318 337 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes yes 4 3.8112E-11 114.4 By MS/MS 9 0 2 2 17194000 17194000 0 0 5597 395 5828;5829 23538;23539 19864;19865 19865 127 2 9650900 0 0 HTFSGVASVESSSGEAFHVGK VAVPLPLHRAHYDLRHTFSGVASVESSSGE ASVESSSGEAFHVGKTPIVGQPSIPGGPVR R H T G K T 2 0 0 0 0 0 2 3 2 0 0 1 0 2 0 5 1 0 0 3 0 0 21 0 2118.997 CON__P12763 CON__P12763 313 333 yes yes 2;3;4 0 438.46 By MS/MS By MS/MS By MS/MS 4.88 2.42 2 3 5 8 5 3 2 3 3 10 9 15 1525200000 967140000 175890000 382130000 + 5598 55 5830 23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554;23555;23556;23557;23558;23559;23560;23561;23562;23563;23564;23565;23566;23567;23568;23569;23570;23571;23572;23573 19866;19867;19868;19869;19870;19871;19872;19873;19874;19875;19876;19877;19878;19879;19880;19881;19882;19883;19884;19885;19886;19887;19888;19889;19890;19891;19892;19893;19894;19895;19896;19897;19898;19899;19900;19901;19902;19903 19876 37 810480000 149820000 63521000 HTGPGILSMANAGPNTNGSQFFICTAK SIYGEKFEDENFILKHTGPGILSMANAGPN GPNTNGSQFFICTAKTEWLDGKHVVFGKVK K H T A K T 3 0 3 0 1 1 0 4 1 2 1 1 1 2 2 2 3 0 0 0 0 0 27 0 2790.3218 P62937 P62937 92 118 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 3 8.547E-43 164.79 By matching By MS/MS 8 0 2 1 1 17431000 4552900 0 12878000 5599 1053 5831 23574;23575 19904 19904 1 3908800 0 1974300 HTGPNSPDTANDGFVR EVFKSNNVEMDWVLKHTGPNSPDTANDGFV TGPNSPDTANDGFVRLRGLPFGCSKEEIVQ K H T V R L 1 1 2 2 0 0 0 2 1 0 0 0 0 1 2 1 2 0 0 1 0 0 16 0 1683.7601 P31943;P55795 P31943 99 114 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 0 346.02 By MS/MS By MS/MS By MS/MS 4.53 1.75 2 3 2 7 7 4 5 3 11 16 1233100000 61285000 387270000 784590000 5600 722;944 5832 23576;23577;23578;23579;23580;23581;23582;23583;23584;23585;23586;23587;23588;23589;23590;23591;23592;23593;23594;23595;23596;23597;23598;23599;23600;23601;23602;23603;23604;23605 19905;19906;19907;19908;19909;19910;19911;19912;19913;19914;19915;19916;19917;19918;19919;19920;19921;19922;19923;19924;19925;19926;19927;19928;19929;19930;19931;19932;19933;19934;19935;19936;19937 19926 33 47963000 117210000 118960000 HTHVQDGEAGGITQQIGATNVPLEAINEQTK GHVDTGKTKILDKLRHTHVQDGEAGGITQQ GATNVPLEAINEQTKMIKNFDRENVRIPGM R H T T K M 3 0 2 1 0 4 3 4 2 3 1 1 0 0 1 0 4 0 0 2 0 0 31 0 3255.612 O60841 O60841 653 683 EIF5B Eukaryotic translation initiation factor 5B yes yes 4 9.4432E-26 106.69 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 116550000 0 30521000 86031000 5601 236 5833 23606;23607;23608;23609 19938;19939;19940 19938 3 0 14125000 18919000 HTIVDILTMK EKAILAGAQPIEEMRHTIVDILTMKSQEKA IEEMRHTIVDILTMKSQEKANLGENMEKSC R H T M K S 0 0 0 1 0 0 0 0 1 2 1 1 1 0 0 0 2 0 0 1 0 0 10 0 1169.6478 Q8WWK9 Q8WWK9 500 509 CKAP2 Cytoskeleton-associated protein 2 yes yes 2 0.001224 109.88 By MS/MS 3.5 0.5 1 1 2 10305000 0 0 10305000 5602 1688 5834 23610;23611 19941 19941 1 0 0 1922400 HTLNQIDSVK AAVDYINKHLPRGYKHTLNQIDSVKVWPRR PRGYKHTLNQIDSVKVWPRRPTGEVYDIEI K H T V K V 0 0 1 1 0 1 0 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1153.6091 CON__P12763 CON__P12763 58 67 yes yes 2 1.856E-62 236.92 By MS/MS By MS/MS By MS/MS 5.21 2.68 3 3 4 5 5 3 3 3 2 3 15 9 10 3278400000 2322900000 397930000 557520000 + 5603 55 5835 23612;23613;23614;23615;23616;23617;23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633;23634;23635;23636;23637;23638;23639;23640;23641;23642;23643;23644;23645 19942;19943;19944;19945;19946;19947;19948;19949;19950;19951;19952;19953;19954;19955;19956;19957;19958;19959;19960;19961;19962;19963;19964;19965;19966;19967;19968;19969;19970;19971;19972;19973;19974;19975;19976;19977;19978;19979;19980;19981;19982 19948 40 1967500000 824160000 104690000 HTLSIGDMVTGTVK DEEVDPALTVGTIKKHTLSIGDMVTGTVKS KHTLSIGDMVTGTVKSIKPTHVVVTLEDGI K H T V K S 0 0 0 1 0 0 0 2 1 1 1 1 1 0 0 1 3 0 0 2 0 0 14 0 1457.7548 Q14690 Q14690 1031 1044 PDCD11 Protein RRP5 homolog yes yes 2 0.00098755 110.08 By MS/MS By matching 1.5 0.5 1 1 1 1 8973300 0 3016500 5956700 5604 1314 5836 23646;23647 19983 19983 1 0 1474400 1346100 HTLVEADIGIQAER DYGKHLLGVEDLLQKHTLVEADIGIQAERV KHTLVEADIGIQAERVRGVNASAQKFATDG K H T E R V 2 1 0 1 0 1 2 1 1 2 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1550.8053 Q01082 Q01082 570 583 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.043395 44.252 By MS/MS 1 0 1 1 14356000 0 0 14356000 5605 1128 5837 23648 19984 19984 1 0 0 3093300 HTMMFSATFPK RRIVEQDTMPPKGVRHTMMFSATFPKEIQM KGVRHTMMFSATFPKEIQMLARDFLDEYIF R H T P K E 1 0 0 0 0 0 0 0 1 0 0 1 2 2 1 1 2 0 0 0 0 0 11 0 1296.5995 O00571;O15523 O00571 377 387 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 1.7419E-26 198.72 By matching By MS/MS By MS/MS 3.33 0.624 9 2 1 2 5 5 276050000 7354700 122820000 145870000 5606 131 5838;5839;5840 23649;23650;23651;23652;23653;23654;23655;23656;23657;23658;23659;23660 19985;19986;19987;19988;19989;19990;19991;19992 19989 69 8 8485600 52221000 27660000 HTNFVEFR LIEEVHAVVTVRDAKHTNFVEFRNFKIIYR VTVRDAKHTNFVEFRNFKIIYRRYAGLYFC K H T F R N 0 1 1 0 0 0 1 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 8 0 1048.509 P53680 P53680 46 53 AP2S1 AP-2 complex subunit sigma yes yes 2 8.1904E-06 154.12 By MS/MS By MS/MS 9 0.707 1 2 1 1 3 39828000 0 5725600 34102000 5607 923 5841 23661;23662;23663;23664 19993;19994 19994 2 0 4584800 17276000 HTNYTMEHIR QQHQLIQEALIFDNKHTNYTMEHIRVGWEQ IFDNKHTNYTMEHIRVGWEQLLTTIARTIN K H T I R V 0 1 1 0 0 0 1 0 2 1 0 0 1 0 0 0 2 0 1 0 0 0 10 0 1300.5983 O43707;P12814;P35609 O43707 724 733 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 3 2.488E-05 143.96 By MS/MS By MS/MS 2.14 0.99 2 3 1 1 4 3 71510000 0 45349000 26160000 5608 210;540 5842;5843 23665;23666;23667;23668;23669;23670;23671 19995;19996;19997;19998;19999;20000 19999 6 0 20515000 5825800 HTQLEQMFR QILTKGEVQVSDKERHTQLEQMFRDIATIV VSDKERHTQLEQMFRDIATIVADKCVNPET R H T F R D 0 1 0 0 0 2 1 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 9 0 1188.571 Q9Y3A5 Q9Y3A5 101 109 SBDS Ribosome maturation protein SBDS yes yes 2 8.0488E-07 137.06 By MS/MS 6.5 0.5 1 1 2 6590900 0 0 6590900 5609 2263 5844 23672;23673 20001;20002 20002 2 0 0 986070 HTTEAAAGALQNITAGDRR VGLYNRLLQRCELNRHTTEAAAGALQNITA AAAGALQNITAGDRRWAGVLSRLALEQERI R H T R R W 5 2 1 1 0 1 1 2 1 1 1 0 0 0 0 0 3 0 0 0 0 0 19 1 1951.9824 Q9Y446 Q9Y446 623 641 PKP3 Plakophilin-3 yes yes 3 0.00055521 69.188 By MS/MS 4 0 1 1 5031600 0 5031600 0 5610 2282 5845 23674 20003 20003 1 0 1669800 0 HTVYPKPEEWPK TAGVAFEYDPDNALRHTVYPKPEEWPKSEY ALRHTVYPKPEEWPKSEYSELDEDESQAPY R H T P K S 0 0 0 0 0 0 2 0 1 0 0 2 0 0 3 0 1 1 1 1 0 0 12 1 1509.7616 P19387 P19387 194 205 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 3 0.022861 63.401 By MS/MS 6 0 1 1 10139000 0 0 10139000 5611 606 5846 23675 20004 20004 1 0 0 1516900 HVAAGTQQPYTDGVR RLVQLLVKAHQDAQRHVAAGTQQPYTDGVR HVAAGTQQPYTDGVRMEEIVEGCTGALHIL R H V V R M 2 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 2 0 1 2 0 0 15 0 1598.7801 P14923 P14923 541 555 JUP Junction plakoglobin yes yes 2;3 5.7402E-73 240.8 By MS/MS By matching By MS/MS 5.55 3.04 3 1 3 2 2 3 1 1 3 3 16 1 5 134680000 121520000 818760 12333000 5612 567 5847 23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686;23687;23688;23689;23690;23691;23692;23693;23694;23695;23696;23697 20005;20006;20007;20008;20009;20010;20011;20012;20013;20014;20015;20016;20017;20018;20019 20017 15 124590000 470140 12236000 HVAEVLEYTK EDKFTKSKTVYSILRHVAEVLEYTKDEQLE YSILRHVAEVLEYTKDEQLESLFQRTAWVF R H V T K D 1 0 0 0 0 0 2 0 1 0 1 1 0 0 0 0 1 0 1 2 0 0 10 0 1187.6186 P05198 P05198 114 123 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.00014657 143.21 By matching By MS/MS 6 0 2 1 1 45507000 0 2657100 42850000 5613 428 5848 23698;23699 20020 20020 1 0 919810 6410800 HVAEVLEYTKDEQLESLFQR EDKFTKSKTVYSILRHVAEVLEYTKDEQLE LEYTKDEQLESLFQRTAWVFDDKYKRPGYG R H V Q R T 1 1 0 1 0 2 4 0 1 0 3 1 0 1 0 1 1 0 1 2 0 0 20 1 2433.2176 P05198 P05198 114 133 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2;3;4 0 380.78 By MS/MS By MS/MS 6 0 5 2 3 94324000 0 9409800 84914000 5614 428 5849 23700;23701;23702;23703;23704 20021;20022;20023;20024;20025 20024 5 0 3257300 12704000 HVAYIIR EKTDEPGKYTADGGKHVAYIIRSHVKDHYI KYTADGGKHVAYIIRSHVKDHYIFYCEGEL K H V I R S 1 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 1 0 0 7 0 870.50757 P31025;Q5VSP4 P31025 102 108 LCN1;LCN1P1 Lipocalin-1;Putative lipocalin 1-like protein 1 yes no 2 1.1088E-08 174.26 By MS/MS 5.95 2.99 2 2 2 1 1 1 3 3 3 2 20 4904000000 4904000000 0 0 5615 716 5850 23705;23706;23707;23708;23709;23710;23711;23712;23713;23714;23715;23716;23717;23718;23719;23720;23721;23722;23723;23724 20026;20027;20028;20029;20030;20031;20032;20033;20034;20035;20036;20037;20038;20039;20040;20041;20042;20043 20031 18 5632600000 0 0 HVDAHATLNDGVVVQVMGLLSNNNQALR KVMSQNFTNCHTKIRHVDAHATLNDGVVVQ VQVMGLLSNNNQALRRFMQTFVLAPEGSVA R H V L R R 3 1 4 2 0 2 0 2 2 0 4 0 1 0 0 1 1 0 0 5 0 0 28 0 2984.525 Q13283 Q13283 79 106 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3;4 1.4494E-98 233.91 By MS/MS 3.25 0.829 1 1 2 4 41831000 0 0 41831000 5616 1236 5851 23725;23726;23727;23728 20044;20045;20046 20045 3 0 0 7532400 HVDYVADQIVTK QISFVNSIATSKGGRHVDYVADQIVTKLVD GGRHVDYVADQIVTKLVDVVKKKNKGGVAV R H V T K L 1 0 0 2 0 1 0 0 1 1 0 1 0 0 0 0 1 0 1 3 0 0 12 0 1386.7143 P11388 P11388 325 336 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 8.4782E-18 189.13 By matching By MS/MS By MS/MS 1.56 0.685 5 3 1 1 3 5 330780000 7591800 27446000 295740000 5617 524 5852 23729;23730;23731;23732;23733;23734;23735;23736;23737 20047;20048;20049;20050;20051;20052;20053;20054 20047 8 7591800 12981000 64005000 HVDYVVDQVVGK QISFVNSIATTKGGRHVDYVVDQVVGKLIE GGRHVDYVVDQVVGKLIEVVKKKNKAGVSV R H V G K L 0 0 0 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 1 5 0 0 12 0 1356.7038 Q02880 Q02880 346 357 TOP2B DNA topoisomerase 2-beta yes yes 2 0.051885 65.535 By MS/MS 1 0 1 1 48492000 0 0 48492000 5618 1150 5853 23738 20055 20055 0 0 0 10448000 HVEDVPAFQALGSLNDLQFFR DGRYSLTYIYTGLSKHVEDVPAFQALGSLN AFQALGSLNDLQFFRYNSKDRKSQPMGLWR K H V F R Y 2 1 1 2 0 2 1 1 1 0 3 0 0 3 1 1 0 0 0 2 0 0 21 0 2402.2019 P25311 P25311 40 60 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2;3 2.4563E-14 137.05 By MS/MS 6 2.1 2 1 1 1 5 20603000 20603000 0 0 5619 656 5854 23739;23740;23741;23742;23743 20056;20057;20058;20059;20060;20061 20060 6 16293000 0 0 HVFFFDTK SELHLLDFQGKQQNKHVFFFDTKKEVEQFD QGKQQNKHVFFFDTKKEVEQFDVATHLQTA K H V T K K 0 0 0 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 1 0 0 8 0 1039.5127 Q9Y3A2 Q9Y3A2 136 143 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 3.7552E-05 151.29 By MS/MS 5.5 0.5 1 1 2 32366000 0 0 32366000 5620 2261 5855 23744;23745 20062 20062 1 0 0 4811100 HVFGESDELIGQK DCGATWVVLGHSERRHVFGESDELIGQKVA RRHVFGESDELIGQKVAHALAEGLGVIACI R H V Q K V 0 0 0 1 0 1 2 2 1 1 1 1 0 1 0 1 0 0 0 1 0 0 13 0 1457.7151 P60174 P60174 138 150 TPI1 Triosephosphate isomerase yes yes 2 0.00031277 138.25 By matching By MS/MS 6.67 0.471 1 2 2 1 36821000 0 5713300 31107000 5621 962 5856 23746;23747;23748 20063 20063 1 0 2794000 5519800 HVFGQAVK ______________________________ VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW R H V V K N 1 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 0 0 2 0 0 8 0 884.48684 Q9ULV4 Q9ULV4 12 19 CORO1C Coronin-1C yes yes 2 0.0015675 114.02 By MS/MS By MS/MS 4.14 1.96 1 1 2 1 1 1 6 1 16295000 0 9941400 6353300 5622 2192 5857 23749;23750;23751;23752;23753;23754;23755 20064;20065 20065 2 0 3228100 1037700 HVFLTGPPGVGK ______________________________ MARHVFLTGPPGVGKTTLIHKASEVLKSSG R H V G K T 0 0 0 0 0 0 0 3 1 0 1 1 0 1 2 0 1 0 0 2 0 0 12 0 1207.6713 Q9BSD7 Q9BSD7 4 15 NTPCR Cancer-related nucleoside-triphosphatase yes yes 2 0.00071125 121.5 By MS/MS By MS/MS 7 0 2 1 1 21881000 0 4432200 17449000 5623 1896 5858 23756;23757 20066;20067 20067 1 0 2545000 3096200 HVHPTTAPDVTSSLPEEK MTSGIRRNWIQTIMKHVHPTTAPDVTSSLP PTTAPDVTSSLPEEKNKSSCSFETCPRPTE K H V E K N 1 0 0 1 0 0 2 0 2 0 1 1 0 0 3 2 3 0 0 2 0 0 18 0 1943.9589 Q6WCQ1 Q6WCQ1 481 498 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.00022837 85.982 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 15503000 0 6540400 8962400 5624 1507 5859 23758;23759;23760 20068;20069 20069 2 0 3014800 2025300 HVIADQEVMETNR PEEVMDVLEMVENVKHVIADQEVMETNRVE VKHVIADQEVMETNRVESVEPSENEASKEL K H V N R V 1 1 1 1 0 1 2 0 1 1 0 0 1 0 0 0 1 0 0 2 0 0 13 0 1540.7304 Q9H307 Q9H307 398 410 PNN Pinin yes yes 2;3 0.00047048 107.17 By MS/MS 1.5 0.5 2 2 4 51699000 0 0 51699000 5625 1978 5860 23761;23762;23763;23764 20070;20071 20071 1 0 0 11563000 HVIADQEVMETNRVESVEPSENEASK PEEVMDVLEMVENVKHVIADQEVMETNRVE NRVESVEPSENEASKELEPEMEFEIEPDKE K H V S K E 2 1 2 1 0 1 6 0 1 1 0 1 1 0 1 3 1 0 0 4 0 0 26 1 2926.3614 Q9H307 Q9H307 398 423 PNN Pinin yes yes 4 4.7039E-20 112.86 By MS/MS 2 0 1 1 23470000 0 0 23470000 5626 1978 5861 23765 20072 20072 1 0 0 5303800 HVINFDLPSDIEEYVHR ATAVAARGLDISNVKHVINFDLPSDIEEYV INFDLPSDIEEYVHRIGRTGRVGNLGLATS K H V H R I 0 1 1 2 0 0 2 0 2 2 1 0 0 1 1 1 0 0 1 2 0 0 17 0 2082.0171 O00571;O15523 O00571 512 528 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3;4 5.115E-27 196.38 By MS/MS By MS/MS 2.91 1.24 2 2 3 3 1 1 10 112360000 0 7135200 105230000 5627 131 5862 23766;23767;23768;23769;23770;23771;23772;23773;23774;23775;23776 20073;20074;20075;20076;20077;20078;20079;20080 20079 8 0 3041700 20322000 HVISYSLSPFEQR ______________________________ MRHVISYSLSPFEQRAYPHVFTKGIPNVLR R H V Q R A 0 1 0 0 0 1 1 0 1 1 1 0 0 1 1 3 0 0 1 1 0 0 13 0 1561.7889 O14949 O14949 13 25 UQCRQ Cytochrome b-c1 complex subunit 8 yes yes 2 3.2553E-17 190.57 By matching By MS/MS 7.2 1.17 2 1 1 1 1 4 114400000 4960200 0 109440000 5628 153 5863 23777;23778;23779;23780;23781 20081 20081 1 6604600 0 20308000 HVLDALDPNAYEAFK IRLIKHDLKMNSGAKHVLDALDPNAYEAFK HVLDALDPNAYEAFKASRNLQDVVERVLHN K H V F K A 3 0 1 2 0 0 1 0 1 0 2 1 0 1 1 0 0 0 1 1 0 0 15 0 1701.8362 P49916 P49916 428 442 LIG3 DNA ligase 3 yes yes 2;3 0.00030064 146.36 By MS/MS 2.33 0.471 2 1 3 33597000 0 0 33597000 5629 874 5864 23782;23783;23784 20082;20083;20084 20084 3 0 0 7392600 HVLTTLGEK FDKEGNGKVMGAELRHVLTTLGEKMTEEEV MGAELRHVLTTLGEKMTEEEVETVLAGHED R H V E K M 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 2 0 0 1 0 0 9 0 996.5604 P14649 P14649 168 176 MYL6B Myosin light chain 6B yes yes 2 8.9513E-05 143.73 By MS/MS By MS/MS 7 0 2 1 1 12754000 0 5490200 7263800 5630 562 5865 23785;23786 20085;20086 20085 2 0 3152500 1288900 HVLVTLGEK FDKEGNGTVMGAEIRHVLVTLGEKMTEEEV MGAEIRHVLVTLGEKMTEEEVEMLVAGHED R H V E K M 0 0 0 0 0 0 1 1 1 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 994.58113 P60660 P60660 111 119 MYL6 Myosin light polypeptide 6 yes yes 2 1.0802E-41 209.87 By MS/MS By MS/MS By MS/MS 8.6 1.02 2 2 4 2 1 5 4 425400000 9981500 263110000 152300000 5631 965 5866 23787;23788;23789;23790;23791;23792;23793;23794;23795;23796 20087;20088;20089;20090;20091;20092;20093;20094;20095;20096;20097;20098;20099;20100 20091 14 5602700 234170000 58506000 HVMQPYYK VGLNALEEWSIYIDRHVMQPYYKDILPCLD WSIYIDRHVMQPYYKDILPCLDGYLKTSAL R H V Y K D 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 2 1 0 0 8 0 1064.5113 P78527 P78527 783 790 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.010396 93.262 By MS/MS 1 0 1 1 14048000 0 0 14048000 5632 1089 5867 23797 20101 20101 1 0 0 3026800 HVPGGGNVQIQNK YSHIQSKCGSKDNIKHVPGGGNVQIQNKKV IKHVPGGGNVQIQNKKVDISKVSSKCGSKA K H V N K K 0 0 2 0 0 2 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 13 0 1346.7055 P27816 P27816 1016 1028 MAP4 Microtubule-associated protein 4 yes yes 3 0.032226 51.841 By MS/MS 1 0 1 1 4447100 0 0 4447100 5633 683 5868 23798 20102 20102 1 0 0 958200 HVPLSGSQIVK IQAPADFAPECFNGRHVPLSGSQIVKGKLA FNGRHVPLSGSQIVKGKLAGKRHRYRVLSS R H V V K G 0 0 0 0 0 1 0 1 1 1 1 1 0 0 1 2 0 0 0 2 0 0 11 0 1163.6663 O15446 O15446 60 70 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 2 0.063433 66.683 By MS/MS 3 0 1 1 0 0 0 0 5634 182 5869 23799 20103 20103 1 0 0 0 HVQGILR KFMDKKLSLKLNGGRHVQGILRGFDPFMNL SLKLNGGRHVQGILRGFDPFMNLVIDECVE R H V L R G 0 1 0 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 821.48717 P62308;A8MWD9 P62308 26 32 SNRPG;SNRPGP15 Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15 yes no 2 0.001385 149.11 By MS/MS By MS/MS By MS/MS 9.57 0.728 1 1 5 2 2 3 351240000 6658400 71748000 272830000 5635 19 5870 23800;23801;23802;23803;23804;23805;23806 20104;20105;20106;20107;20108;20109;20110;20111;20112;20113;20114 20112 10 11913000 362990000 571890000 HVSAYGPGLSHGMVNKPATFTIVTK PGSPLQFYVDAINSRHVSAYGPGLSHGMVN HGMVNKPATFTIVTKDAGEGGLSLAVEGPS R H V T K D 2 0 1 0 0 0 0 3 2 1 1 2 1 1 2 2 3 0 1 3 0 0 25 1 2611.3581 Q14315 Q14315 1861 1885 FLNC Filamin-C yes yes 4 0.00031175 55.051 By MS/MS 1 0 1 1 9794200 0 9794200 0 5636 1298 5871 23807 20115 20115 1 0 4787300 0 HVVFGEVTEGLDVLR QFFLTCDKTDWLDGKHVVFGEVTEGLDVLR HVVFGEVTEGLDVLRQIEAQGSKDGKPKQK K H V L R Q 0 1 0 1 0 0 2 2 1 0 2 0 0 1 0 0 1 0 0 4 0 0 15 0 1668.8835 Q9UNP9 Q9UNP9 262 276 PPIE Peptidyl-prolyl cis-trans isomerase E yes yes 3 0.0024006 73.887 By MS/MS 6 0 1 1 3928800 0 0 3928800 5637 2209 5872 23808 20116 20116 1 0 0 587790 HVVFGFVK QFVITLKKAEHLDFKHVVFGFVKDGMDTVK AEHLDFKHVVFGFVKDGMDTVKKIESFGSP K H V V K D 0 0 0 0 0 0 0 1 1 0 0 1 0 2 0 0 0 0 0 3 0 0 8 0 931.52797 P49792 P49792 3186 3193 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.045028 74.191 By MS/MS 1 0 1 1 7106900 0 0 7106900 5638 871 5873 23809 20117 20117 1 0 0 1531300 HVVFGHVK QFFICTIKTDWLDGKHVVFGHVKEGMDVVK TDWLDGKHVVFGHVKEGMDVVKKIESFGSK K H V V K E 0 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 3 0 0 8 0 921.51847 P30405 P30405 168 175 PPIF Peptidyl-prolyl cis-trans isomerase F, mitochondrial yes yes 2 0.025152 80.294 By matching By MS/MS 7.33 0.471 2 1 1 2 5587700 0 1206800 4380900 5639 713 5874 23810;23811;23812 20118;20119 20118 2 0 692950 772730 HVVFIAQR QVRLVRELEKKFSGKHVVFIAQRRILPKPT EKKFSGKHVVFIAQRRILPKPTRKSRTKNK K H V Q R R 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 2 0 0 8 0 968.55558 P62081 P62081 91 98 RPS7 40S ribosomal protein S7 yes yes 2 6.3045E-20 187.21 By MS/MS By MS/MS By MS/MS 6.67 0.943 1 1 3 1 1 3 2 1005500000 28850000 256890000 719810000 5640 1005 5875 23813;23814;23815;23816;23817;23818 20120;20121;20122;20123 20121 4 62178000 146030000 127210000 HVVFYPTLK ASEHFFEYKKSRSGRHVVFYPTLKSLQVRL KSRSGRHVVFYPTLKSLQVRLELARELGVG R H V L K S 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 1 2 0 0 9 0 1102.6175 Q9BWS9 Q9BWS9 353 361 CHID1 Chitinase domain-containing protein 1 yes yes 2 0.0005802 116.73 By MS/MS 5 0 1 1 36209000 0 0 36209000 5641 1926 5876 23819 20124 20124 1 0 0 5050500 HVVLGAIENKVESK ADELRRHLELKEKGRHVVLGAIENKVESKG RHVVLGAIENKVESKGNSPPSSGEACREEK R H V S K G 1 0 1 0 0 0 2 1 1 1 1 2 0 0 0 1 0 0 0 3 0 0 14 1 1521.8515 P41227 P41227 170 183 NAA10 N-alpha-acetyltransferase 10 yes yes 3 0.00036907 77.192 By MS/MS 6 0 1 1 0 0 0 0 5642 794 5877 23820 20125 20125 1 0 0 0 HVVPNEVVVQR SGLKYKKGGVASGFKHVVPNEVVVQRLFQV SGFKHVVPNEVVVQRLFQVKGRRVVRATEV K H V Q R L 0 1 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 0 0 5 0 0 11 0 1274.7095 P06396 P06396 178 188 GSN Gelsolin no no 2;3 0.00023244 135.79 By MS/MS By MS/MS By MS/MS 3.22 2.1 4 4 1 3 4 2 47243000 9067100 14689000 23487000 + 5643 440 5878 23821;23822;23823;23824;23825;23826;23827;23828;23829 20126;20127;20128;20129;20130;20131 20128 6 9523600 6388700 4555400 HVVQSISTQQEK MRRKEQEHMINWVEKHVVQSISTQQEKETI VEKHVVQSISTQQEKETIAKCIADLKLLAK K H V E K E 0 0 0 0 0 3 1 0 1 1 0 1 0 0 0 2 1 0 0 2 0 0 12 0 1382.7154 P24539 P24539 222 233 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 3 0.054638 43.544 By matching By MS/MS 7 0 2 1 1 4514800 0 1833800 2681000 5644 650 5879 23830;23831 20132 20132 1 0 1053000 475730 HVVQSISTQQEKETIAK MRRKEQEHMINWVEKHVVQSISTQQEKETI VQSISTQQEKETIAKCIADLKLLAKKAQAQ K H V A K C 1 0 0 0 0 3 2 0 1 2 0 2 0 0 0 2 2 0 0 2 0 0 17 1 1925.0218 P24539 P24539 222 238 ATP5F1 ATP synthase F(0) complex subunit B1, mitochondrial yes yes 3 0.00018418 94.882 By MS/MS 7 0 1 1 3756100 0 3756100 0 5645 650 5880 23832 20133 20133 1 0 2156800 0 HWDQDDDFEFTGSHLTVR LEFANATPLSTLSLKHWDQDDDFEFTGSHL QDDDFEFTGSHLTVRNGYSCVPVALAEGLD K H W V R N 0 1 0 4 0 1 1 1 2 0 1 0 0 2 0 1 2 1 0 1 0 0 18 0 2203.9559 O60341 O60341 551 568 KDM1A Lysine-specific histone demethylase 1A yes yes 3 3.1948E-23 187.31 By MS/MS 2 0 1 1 15430000 0 0 15430000 5646 226 5881 23833 20134 20134 1 0 0 3486900 HWFTMER FKFILANRLYPVSARHWFTMERLEVHSNGS RLYPVSARHWFTMERLEVHSNGSVAYFNAS R H W E R L 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 7 0 1005.4491 Q15904 Q15904 338 344 ATP6AP1 V-type proton ATPase subunit S1 yes yes 2 0.011689 117.7 By MS/MS 4.5 0.5 1 1 2 15036000 0 0 15036000 5647 1382 5882 23834;23835 20135 20135 1 0 0 2202200 HWGGNVLGPK AIRTNYNDRYDEIRRHWGGNVLGPKSVARI DEIRRHWGGNVLGPKSVARIAKLEKAKAKE R H W P K S 0 0 1 0 0 0 0 3 1 0 1 1 0 0 1 0 0 1 0 1 0 0 10 0 1063.5563 P62424 P62424 236 245 RPL7A 60S ribosomal protein L7a yes yes 2 0.0024614 105.57 By MS/MS By MS/MS By MS/MS 6.5 0.5 2 2 1 1 2 577010000 6010300 194490000 376510000 5648 1026 5883 23836;23837;23838;23839 20136;20137;20138;20139 20139 3 12953000 67326000 57626000 HWILPQDYDHAQAEAR RDLNKDGKLDKDEIRHWILPQDYDHAQAEA WILPQDYDHAQAEARHLVYESDKNKDEKLT R H W A R H 3 1 0 2 0 2 1 0 2 1 1 0 0 0 1 0 0 1 1 0 0 0 16 0 1948.918 Q15293 Q15293 271 286 RCN1 Reticulocalbin-1 yes yes 2;3;4 3.0357E-26 201.02 By MS/MS 5.67 0.745 3 2 1 6 153620000 0 0 153620000 5649 1354 5884 23840;23841;23842;23843;23844;23845 20140;20141;20142;20143 20141 4 0 0 21752000 HWMLDKLTGVFAPR ARGPKKHLKRVAAPKHWMLDKLTGVFAPRP KHWMLDKLTGVFAPRPSTGPHKLRECLPLI K H W P R P 1 1 0 1 0 0 0 1 1 0 2 1 1 1 1 0 1 1 0 1 0 0 14 1 1669.8763 P62701;Q8TD47;P22090 P62701 17 30 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 3 0.00010021 121.56 By MS/MS By matching 6 0 2 1 1 6950200 0 5240600 1709600 5650 1029 5885 23846;23847 20144 20144 1 0 1814100 255770 HWPFMVVNDAGRPK IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV KHWPFMVVNDAGRPKVQVEYKGETKSFYPE K H W P K V 1 1 1 1 0 0 0 1 1 0 0 1 1 1 2 0 0 1 0 2 0 0 14 1 1652.8246 P11142 P11142 89 102 HSPA8 Heat shock cognate 71 kDa protein yes yes 3;4 0.00014763 116.71 By MS/MS By MS/MS 2.67 0.745 1 5 2 4 225580000 0 97002000 128580000 5651 517 5886;5887 23848;23849;23850;23851;23852;23853 20145;20146;20147;20148;20149;20150;20151;20152;20153;20154;20155 20150 217 11 0 41352000 25114000 HWPFQVINDGDKPK IGRKFGDPVVQSDMKHWPFQVINDGDKPKV KHWPFQVINDGDKPKVQVSYKGETKAFYPE K H W P K V 0 0 1 2 0 1 0 1 1 1 0 2 0 1 2 0 0 1 0 1 0 0 14 1 1679.842 P0DMV9;P0DMV8 P0DMV9 89 102 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 0.00012137 119.25 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 4 124820000 0 38731000 86084000 5652 501 5888 23854;23855;23856;23857;23858 20156;20157;20158;20159;20160;20161;20162;20163 20162 8 0 16511000 16733000 HYAGDVVYSVIGFIDK ASDKILEFDRDFRIRHYAGDVVYSVIGFID YAGDVVYSVIGFIDKNKDTLFQDFKRLMYN R H Y D K N 1 0 0 2 0 0 0 2 1 2 0 1 0 1 0 1 0 0 2 3 0 0 16 0 1781.8988 O94832 O94832 507 522 MYO1D Unconventional myosin-Id yes yes 2;3 0.00011457 102.4 By MS/MS 2 0 2 2 13597000 0 0 13597000 5653 299 5889 23859;23860 20164;20165 20165 2 0 0 3072700 HYDGSYSTFGER IGYLNTGYQRQLNYKHYDGSYSTFGERYGR NYKHYDGSYSTFGERYGRNQGNTWLTAFVL K H Y E R Y 0 1 0 1 0 0 1 2 1 0 0 0 0 1 0 2 1 0 2 0 0 0 12 0 1417.5899 P01023 P01023 1020 1031 A2M Alpha-2-macroglobulin yes yes 2;3 3.9221E-06 161.63 By MS/MS 9 0 2 2 12094000 12094000 0 0 5654 370 5890 23861;23862 20166;20167 20166 2 6788200 0 0 HYDLESVPMTWDPVDQNPR LLLHLEELQMEHDIRHYDLESVPMTWDPVD ESVPMTWDPVDQNPRLLTLEVPGVTESRPS R H Y P R L 0 1 1 3 0 1 1 0 1 0 1 0 1 0 3 1 1 1 1 2 0 0 19 0 2298.0375 Q9HCE1 Q9HCE1 357 375 MOV10 Putative helicase MOV-10 yes yes 3 3.2392E-07 109.38 By MS/MS 2 0 1 1 4056400 0 0 4056400 5655 2011 5891 23863 20168 20168 1 0 0 916670 HYEMQQQQFQHLYQEWER PPPHIQTMSVDMQLRHYEMQQQQFQHLYQE MQQQQFQHLYQEWEREFQLWEEQLHSYPHK R H Y E R E 0 1 0 0 0 6 3 0 2 0 1 0 1 1 0 0 0 1 2 0 0 0 18 0 2507.1077 P49750 P49750 440 457 YLPM1 YLP motif-containing protein 1 yes yes 3 1.8865E-17 181.41 By MS/MS 1 0 1 1 5853600 0 0 5853600 5656 865 5892 23864 20169 20169 1 0 0 1261200 HYGPGWVSMANAGK SIYGERFPDENFKLKHYGPGWVSMANAGKD KHYGPGWVSMANAGKDTNGSQFFITTVKTA K H Y G K D 2 0 1 0 0 0 0 3 1 0 0 1 1 0 1 1 0 1 1 1 0 0 14 0 1473.6823 P23284 P23284 132 145 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 1.0593E-72 245.08 By matching By MS/MS By MS/MS 7.09 0.287 10 1 1 4 6 367070000 2705500 69149000 295220000 5657 640 5893;5894 23865;23866;23867;23868;23869;23870;23871;23872;23873;23874;23875 20170;20171;20172;20173;20174;20175;20176 20175 292 7 5830900 39706000 52337000 HYNEEGSQVYNDAHILEK EGMIEDMKLMFRNARHYNEEGSQVYNDAHI EEGSQVYNDAHILEKLLKEKRKELGPLPDD R H Y E K L 1 0 2 1 0 1 3 1 2 1 1 1 0 0 0 1 0 0 2 1 0 0 18 0 2144.9763 Q86U86 Q86U86 599 616 PBRM1 Protein polybromo-1 yes yes 3 3.052E-09 124.63 By MS/MS 1 0 1 1 44452000 0 0 44452000 5658 1545 5895 23876 20177 20177 1 0 0 9577900 HYNGEAYEDDEHHPR QVELVDFDPNQERRRHYNGEAYEDDEHHPR HYNGEAYEDDEHHPRGGVQCQTS_______ R H Y P R G 1 1 1 2 0 0 3 1 3 0 0 0 0 0 1 0 0 0 2 0 0 0 15 0 1867.751 P31689 P31689 375 389 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3;4 5.3165E-05 123.76 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 27126000 0 1680000 25446000 5659 720 5896 23877;23878;23879;23880 20178;20179;20180;20181 20181 4 0 433060 3583800 HYTFASGSPDNIK TNHKKSVRAVVLHPRHYTFASGSPDNIKQW PRHYTFASGSPDNIKQWKFPDGSFIQNLSG R H Y I K Q 1 0 1 1 0 0 0 1 1 1 0 1 0 1 1 2 1 0 1 0 0 0 13 0 1435.6732 O43660 O43660 384 396 PLRG1 Pleiotropic regulator 1 yes yes 2;3 3.906E-34 213.35 By MS/MS By MS/MS 3 1.15 1 1 1 3 2 4 45075000 0 20848000 24226000 5660 205 5897 23881;23882;23883;23884;23885;23886 20182;20183;20184 20182 3 0 6918800 4699800 HYWEVEVGDK LFPCVLGSPCFIAGRHYWEVEVGDKAKWTI FIAGRHYWEVEVGDKAKWTIGVCEDSVCRK R H Y D K A 0 0 0 1 0 0 2 1 1 0 0 1 0 0 0 0 0 1 1 2 0 0 10 0 1260.5775 P14373;Q9HCM9 P14373 371 380 TRIM27;TRIM39 Zinc finger protein RFP;E3 ubiquitin-protein ligase TRIM39 yes no 2 0.012698 87.149 By MS/MS 4 0 1 1 6284200 0 0 6284200 5661 557 5898 23887 20185 20185 1 0 0 1026400 IAAAILNTPDLR LIRPMYSNPPLNGARIAAAILNTPDLRKQW GARIAAAILNTPDLRKQWLQEVKVMADRII R I A L R K 3 1 1 1 0 0 0 0 0 2 2 0 0 0 1 0 1 0 0 0 0 0 12 0 1266.7296 P00505 P00505 326 337 GOT2 Aspartate aminotransferase, mitochondrial yes yes 2 6.9618E-10 117.3 By MS/MS 5 0 1 1 0 0 0 0 5662 362 5899 23888 20186 20186 1 0 0 0 IAADILIK RAELSKNGEWYEVLKIAADILIKEEILSEN EWYEVLKIAADILIKEEILSENDQLSNQVV K I A I K E 2 0 0 1 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 8 0 855.54295 Q9H583 Q9H583 578 585 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.016826 86.794 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 22947000 1237700 5873900 15835000 5663 1984 5900 23889;23890;23891;23892 20187;20188 20187 2 1237700 2871100 3431700 IAAIDSLNQYTR PDISPPTYVKEELSKIAAIDSLNQYTRGFG LSKIAAIDSLNQYTRGFGHPSLVKALSYLY K I A T R G 2 1 1 1 0 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 12 0 1363.7096 Q6YP21 Q6YP21 88 99 CCBL2 Kynurenine--oxoglutarate transaminase 3 yes yes 2 7.6989E-06 109.42 By MS/MS 5 0 1 1 0 0 0 0 5664 1508 5901 23893 20189 20189 1 0 0 0 IAALQAFADQLIAAGHYAK KHEDFDKAINVQEEKIAALQAFADQLIAAG QAFADQLIAAGHYAKGDISSRRNEVLDRWR K I A A K G 7 0 0 1 0 2 0 1 1 2 2 1 0 1 0 0 0 0 1 0 0 0 19 0 1971.0578 Q13813 Q13813 1501 1519 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 6.2627E-09 133.15 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 141080000 0 22537000 118550000 5665 1268 5902 23894;23895;23896;23897;23898 20190;20191;20192;20193;20194;20195 20194 6 0 10491000 25588000 IAAQDLLLAVATDFQNESAAALAAAATR FVEDEDDDTFSYTVRIAAQDLLLAVATDFQ FQNESAAALAAAATRHLQEAEQTKNSGTEH R I A T R H 11 1 1 2 0 2 1 0 0 1 4 0 0 1 0 1 2 0 0 1 0 0 28 0 2785.461 Q96P70 Q96P70 400 427 IPO9 Importin-9 yes yes 3;4 8.1922E-07 62.848 By MS/MS 2 0 2 2 3033100 0 0 3033100 5666 1817 5903 23899;23900 20196;20197 20197 2 0 0 685420 IAAQTLLGTAK EGAVKMGMPSSLAHRIAAQTLLGTAKMLLH LAHRIAAQTLLGTAKMLLHEGQHPAQLRSD R I A A K M 3 0 0 0 0 1 0 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 11 0 1085.6445 Q53H96 Q53H96 208 218 PYCRL Pyrroline-5-carboxylate reductase 3 yes yes 2 0.00011668 140.45 By MS/MS By matching 7 0 2 1 1 18964000 0 12560000 6403900 5667 1428 5904 23901;23902 20198 20198 1 0 7212200 1136300 IAAYLFK LAQRLEKHELIEFRRIAAYLFKGNNRWKQS HELIEFRRIAAYLFKGNNRWKQSVELCKKD R I A F K G 2 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 0 7 0 824.47963 Q00610 Q00610 1510 1516 CLTC Clathrin heavy chain 1 yes yes 2 0.027632 94.669 By matching By MS/MS By MS/MS 2.14 1.12 3 1 2 1 1 3 3 81630000 1116700 24443000 56070000 5668 1125 5905 23903;23904;23905;23906;23907;23908;23909 20199;20200;20201;20202;20203 20200 5 1116700 11280000 11726000 IADFGWSVHAPSLR IKPENLLLGLKGELKIADFGWSVHAPSLRR KIADFGWSVHAPSLRRKTMCGTLDYLPPEM K I A L R R 2 1 0 1 0 0 0 1 1 1 1 0 0 1 1 2 0 1 0 1 0 0 14 0 1554.7943 Q96GD4 Q96GD4 216 229 AURKB Aurora kinase B yes yes 2;3 0.00049335 136.96 By matching By MS/MS 6.25 0.433 3 1 1 3 36352000 0 4274600 32078000 5669 1790 5906 23910;23911;23912;23913 20204;20205 20205 2 0 1479700 4899000 IADQFLGAMYTLPR TVHGALLSGLREAGRIADQFLGAMYTLPRQ RIADQFLGAMYTLPRQATPGVPAQQSPSM_ R I A P R Q 2 1 0 1 0 1 0 1 0 1 2 0 1 1 1 0 1 0 1 0 0 0 14 0 1594.8177 O60341 O60341 825 838 KDM1A Lysine-specific histone demethylase 1A yes yes 2;3 0.00010755 155.48 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 20974000 0 5900100 15074000 5670 226 5907 23914;23915;23916;23917 20206;20207;20208 20206 3 0 2656900 3337300 IADQMFFHSDYRPLIR HLLIFGFGSSSKYDKIADQMFFHSDYRPLI ADQMFFHSDYRPLIRDANNFVLDEQTQQAP K I A I R D 1 2 0 2 0 1 0 0 1 2 1 0 1 2 1 1 0 0 1 0 0 0 16 1 2007.9989 Q8WWQ0 Q8WWQ0 552 567 PHIP PH-interacting protein yes yes 3 8.3107E-06 133.14 By MS/MS 1 0 1 1 8801000 0 0 8801000 5671 1690 5908 23918 20209 20209 1 0 0 1896300 IAECSSQLAEEEEK QNSKFIKEKKLMEDRIAECSSQLAEEEEKA RIAECSSQLAEEEEKAKNLAKIRNKQEVMI R I A E K A 2 0 0 0 1 1 5 0 0 1 1 1 0 0 0 2 0 0 0 0 0 0 14 0 1621.7141 P35580 P35580 1008 1021 MYH10 Myosin-10 yes yes 2 0.00037443 132.32 By MS/MS 1 0 1 1 2878200 0 2878200 0 5672 753 5909 23919 20210 20210 1 0 1406800 0 IAECSSQLAEEEEKAK QNSKFIKEKKLMEDRIAECSSQLAEEEEKA AECSSQLAEEEEKAKNLAKIRNKQEVMISD R I A A K N 3 0 0 0 1 1 5 0 0 1 1 2 0 0 0 2 0 0 0 0 0 0 16 1 1820.8462 P35580 P35580 1008 1023 MYH10 Myosin-10 yes yes 3 0.0090539 56.959 By MS/MS 1 0 1 1 4318400 0 0 4318400 5673 753 5910 23920 20211 20211 1 0 0 930460 IAEFPLNPMFAK GLDKDCRLTEPLGMRIAEFPLNPMFAKMLL GMRIAEFPLNPMFAKMLLESGNFGCSQEIL R I A A K M 2 0 1 0 0 0 1 0 0 1 1 1 1 2 2 0 0 0 0 0 0 0 12 0 1376.7162 Q9H5Z1 Q9H5Z1 483 494 DHX35 Probable ATP-dependent RNA helicase DHX35 yes yes 2 0.020801 84.213 By MS/MS 3 0 1 1 4406500 0 4406500 0 5674 1985 5911 23921 20212 20212 1 0 1878500 0 IAEFTTNLTEEEEK QNCKLAKEKKLLEDRIAEFTTNLTEEEEKS RIAEFTTNLTEEEEKSKSLAKLKNKHEAMI R I A E K S 1 0 1 0 0 0 5 0 0 1 1 1 0 1 0 0 3 0 0 0 0 0 14 0 1652.7781 P35579 P35579 1001 1014 MYH9 Myosin-9 yes yes 2 1.3265E-72 244.01 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 176770000 0 130020000 46753000 5675 752 5912 23922;23923;23924;23925 20213;20214;20215;20216;20217;20218 20213 6 0 63328000 10170000 IAEFTTNLTEEEEKSK QNCKLAKEKKLLEDRIAEFTTNLTEEEEKS AEFTTNLTEEEEKSKSLAKLKNKHEAMITD R I A S K S 1 0 1 0 0 0 5 0 0 1 1 2 0 1 0 1 3 0 0 0 0 0 16 1 1867.9051 P35579 P35579 1001 1016 MYH9 Myosin-9 yes yes 2;3 1.054E-45 219.92 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 184150000 0 128520000 55629000 5676 752 5913 23926;23927;23928;23929;23930;23931 20219;20220;20221;20222;20223 20222 5 0 62475000 12014000 IAEGVNSLLQMAGLLAR LKLEFIKEIGYTHMKIAEGVNSLLQMAGLL EGVNSLLQMAGLLARLCQKTMAPVAS____ K I A A R L 3 1 1 0 0 1 1 2 0 1 4 0 1 0 0 1 0 0 0 1 0 0 17 0 1754.9713 P35250 P35250 327 343 RFC2 Replication factor C subunit 2 yes yes 2;3 6.1233E-05 100.55 By MS/MS 6 0 2 2 5287300 0 5287300 0 5677 745 5914 23932;23933 20224;20225 20224 2 0 1830300 0 IAEIEAEMAR ______________________________ STLAKIAEIEAEMARTQKNKATAHHLGLLK K I A A R T 3 1 0 0 0 0 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 10 0 1131.5594 Q9Y295 Q9Y295 8 17 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.058939 57.859 By MS/MS By matching 5.5 0.5 1 1 1 1 2892000 0 1168200 1723800 5678 2239 5915 23934;23935 20226 20226 0 0 301130 257900 IAELLENVTLIHKPVSLQPR KEGLVPVSEDPVAIKIAELLENVTLIHKPV ENVTLIHKPVSLQPRGLINKGNWCYINATL K I A P R G 1 1 1 0 0 1 2 0 1 2 4 1 0 0 2 1 1 0 0 2 0 0 20 1 2269.3158 Q14694 Q14694 396 415 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes yes 4 0.001764 57.989 By MS/MS 2 0 1 1 12512000 0 0 12512000 5679 1316 5916 23936 20227 20227 1 0 0 2827400 IAELSEDDQK NKPLIVVANKCDVKRIAELSEDDQKIFTDL CDVKRIAELSEDDQKIFTDLQSEGFPVIET R I A Q K I 1 0 0 2 0 1 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1146.5404 Q9BZE4 Q9BZE4 296 305 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 2.4012E-11 172.21 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 80940000 0 12302000 68639000 5680 1941 5917 23937;23938;23939;23940 20228;20229;20230 20229 3 0 5302900 13235000 IAEQDFSYFFPDDPPTFIFSPANR DGVIKIKASSLSTYKIAEQDFSYFFPDDPP FPDDPPTFIFSPANRRRGRPPKRIHISQED K I A N R R 2 1 1 3 0 1 1 0 0 2 0 0 0 5 4 2 1 0 1 0 0 0 24 0 2820.3071 Q9NRL2 Q9NRL2 251 274 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 0.067422 18.699 By MS/MS 1.5 0.5 1 1 2 1653600 0 0 1653600 5681 2045 5918 23941;23942 20231 20231 1 0 0 360250 IAFAITAIK HILRVLNTNIDGRRKIAFAITAIKGVGRRY IDGRRKIAFAITAIKGVGRRYAHVVLRKAD K I A I K G 3 0 0 0 0 0 0 0 0 3 0 1 0 1 0 0 1 0 0 0 0 0 9 0 946.58515 P62269 P62269 26 34 RPS18 40S ribosomal protein S18 yes yes 2 0.0117 87.696 By MS/MS By MS/MS By MS/MS 8 1.32 1 2 3 2 1 4 3 315820000 10428000 117850000 187540000 5682 1014 5919 23943;23944;23945;23946;23947;23948;23949;23950 20232;20233;20234;20235;20236;20237;20238 20234 7 8952900 65020000 47081000 IAFAITAIKGVGR HILRVLNTNIDGRRKIAFAITAIKGVGRRY RKIAFAITAIKGVGRRYAHVVLRKADIDLT K I A G R R 3 1 0 0 0 0 0 2 0 3 0 1 0 1 0 0 1 0 0 1 0 0 13 1 1315.7976 P62269 P62269 26 38 RPS18 40S ribosomal protein S18 yes yes 3 0.01195 67.997 By MS/MS 8 0 1 1 2367100 0 2367100 0 5683 1014 5920 23951 20239 20239 1 0 1077000 0 IAFFSSR PVRVFMLHQDLRFPRIAFFSSRDIRTGEEL HQDLRFPRIAFFSSRDIRTGEELGFDYGDR R I A S R D 1 1 0 0 0 0 0 0 0 1 0 0 0 2 0 2 0 0 0 0 0 0 7 0 826.43374 Q96KQ7 Q96KQ7 1136 1142 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes yes 2 0.018521 105.2 By MS/MS 1 0 1 1 2948600 0 0 2948600 5684 1805 5921 23952 20240 20240 1 0 0 635320 IAFSSTSLLK EEELFRQGELNKGRRIAFSSTSLLKMAPSA NKGRRIAFSSTSLLKMAPSAEERTTIHEMF R I A L K M 1 0 0 0 0 0 0 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 10 0 1065.607 Q9Y305 Q9Y305 241 250 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.015297 85.676 By MS/MS By MS/MS 4.5 0.957 1 2 2 1 3 3 138690000 0 71840000 66849000 5685 2256 5922 23953;23954;23955;23956;23957;23958 20241;20242;20243;20244;20245 20242 5 0 19444000 9728700 IAFTEWIEPPKR SVYNFEGEDYREKQKIAFTEWIEPPKRERK KQKIAFTEWIEPPKRERKANYAVDAYFREA K I A K R E 1 1 0 0 0 0 2 0 0 2 0 1 0 1 2 0 1 1 0 0 0 0 12 1 1485.798 O60264 O60264 725 736 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 7.9074E-05 147.4 By matching By MS/MS By MS/MS 1.67 0.471 2 4 1 2 3 83525000 3168200 11098000 69258000 5686 223 5923 23959;23960;23961;23962;23963;23964 20246;20247;20248;20249;20250;20251 20251 6 3817200 5037500 15547000 IAGDYVSEEVWYR VDYTWYVDTILNLIRIAGDYVSEEVWYRVI IRIAGDYVSEEVWYRVIQIVINRDDVQGYA R I A Y R V 1 1 0 1 0 0 2 1 0 1 0 0 0 0 0 1 0 1 2 2 0 0 13 0 1585.7413 O94973;O95782 O94973 451 463 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 1.0728E-07 171.85 By MS/MS 2 0 1 1 13813000 0 0 13813000 5687 306;339 5924 23965 20252 20252 1 0 0 3121400 IAGYVTHLMK CEEIAIIPSKKLRNKIAGYVTHLMKRIQRG KLRNKIAGYVTHLMKRIQRGPVRGISIKLQ K I A M K R 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 1 0 1 1 0 0 10 0 1131.6111 P08708 P08708 50 59 RPS17 40S ribosomal protein S17 yes yes 2 0.00022398 122.19 By MS/MS By MS/MS 7.5 0.957 1 2 2 1 4 2 151170000 0 102450000 48717000 5688 477 5925;5926 23966;23967;23968;23969;23970;23971 20253;20254;20255;20256;20257 20255 191 5 0 48538000 10953000 IAHIPLYFVNAQFPR FNKGALLSVGWSTGRIAHIPLYFVNAQFPR IAHIPLYFVNAQFPRFSPVLGRAQEPPAGG R I A P R F 2 1 1 0 0 1 0 0 1 2 1 0 0 2 2 0 0 0 1 1 0 0 15 0 1784.9726 Q9NRG9 Q9NRG9 479 493 AAAS Aladin yes yes 3 9.0984E-05 110.31 By MS/MS 4 0 1 1 4249000 0 0 4249000 5689 2044 5927 23972 20258 20258 1 0 0 694000 IAHLAQIEDDR TLPNYTKGSGDVLGKIAHLAQIEDDRAAMV VLGKIAHLAQIEDDRAAMVISWHLASDMDC K I A D R A 2 1 0 2 0 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1279.6521 A6NHR9 A6NHR9 1726 1736 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0001059 140.88 By MS/MS 1 0 1 1 20959000 0 0 20959000 5690 15 5928 23973 20259 20259 1 0 0 4516100 IAIPGLAGAGNSVLLVSNLNPER LAIPSAAAAAAAAGRIAIPGLAGAGNSVLL AGNSVLLVSNLNPERVTPQSLFILFGVYGD R I A E R V 3 1 3 0 0 0 1 3 0 2 4 0 0 0 2 2 0 0 0 2 0 0 23 0 2274.2696 P26599 P26599 326 348 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3 7.0306E-171 284.68 By MS/MS By MS/MS By MS/MS 3.61 1.69 4 2 4 6 4 2 1 2 12 9 2081300000 14704000 1468300000 598310000 5691 671 5929 23974;23975;23976;23977;23978;23979;23980;23981;23982;23983;23984;23985;23986;23987;23988;23989;23990;23991;23992;23993;23994;23995;23996 20260;20261;20262;20263;20264;20265;20266;20267;20268;20269;20270;20271;20272;20273;20274;20275;20276;20277;20278;20279;20280;20281;20282;20283;20284;20285;20286;20287;20288;20289;20290;20291;20292;20293;20294 20290 35 11472000 486310000 102190000 IAIYELLFK ______________________________ MPKKNRIAIYELLFKEGVMVAKKDVHMPKH R I A F K E 1 0 0 0 0 0 1 0 0 2 2 1 0 1 0 0 0 0 1 0 0 0 9 0 1108.6532 P46783 P46783 9 17 RPS10 40S ribosomal protein S10 yes yes 2 0.00045939 130.27 By MS/MS By MS/MS 6.27 2.09 1 1 1 2 2 3 1 7 4 215410000 0 21125000 194280000 5692 833 5930 23997;23998;23999;24000;24001;24002;24003;24004;24005;24006;24007 20295;20296;20297;20298;20299;20300;20301;20302;20303 20301 9 0 10697000 34768000 IAIYLSK FMVINNDDTESAEMKIAIYLSKSGICSLHP DTESAEMKIAIYLSKSGICSLHPLLRGWEE K I A S K S 1 0 0 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 7 0 806.49019 Q9H583 Q9H583 621 627 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.0047267 128.38 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 21104000 0 7586500 13518000 5693 1984 5931 24008;24009;24010 20304;20305 20305 2 0 3708200 2930100 IALDFQR MLITILGTVKPNANRIALDFQRGNDVAFHF TVKPNANRIALDFQRGNDVAFHFNPRFNEN R I A Q R G 1 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 861.47085 P17931 P17931 145 151 LGALS3 Galectin-3 yes yes 2 0.021479 99.919 By matching By MS/MS 5 0.816 1 1 1 2 1 9211500 0 2630400 6581100 5694 590 5932 24011;24012;24013 20306 20306 1 0 762220 984600 IALHTALNNPYYYLK SAAHALREHLNAAPRIALHTALNNPYYYLK IALHTALNNPYYYLKNEALKSEEGCIPNIA R I A L K N 2 0 2 0 0 0 0 0 1 1 3 1 0 0 1 0 1 0 3 0 0 0 15 0 1792.9512 Q9UBD5 Q9UBD5 597 611 ORC3 Origin recognition complex subunit 3 yes yes 3 0.003085 73.877 By MS/MS 3 0 1 1 7468400 0 7468400 0 5695 2130 5933 24014 20307 20307 0 0 3183800 0 IALLEEAK NQEQLAAELAEFTAKIALLEEAKKKKEEEA LAEFTAKIALLEEAKKKKEEEATEWQHKAF K I A A K K 2 0 0 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 0 885.51713 P35241 P35241 428 435 RDX Radixin yes yes 2 0.011045 92.47 By MS/MS By MS/MS 3 0 2 1 1 4289700 0 4289700 0 5696 742 5934 24015;24016 20308;20309 20308 2 0 1828700 0 IALLPLLQAETDRR NRERRRLQIEDFEARIALLPLLQAETDRRT RIALLPLLQAETDRRTLQMLRENLEEEAII R I A R R T 2 2 0 1 0 1 1 0 0 1 4 0 0 0 1 0 1 0 0 0 0 0 14 1 1607.9359 Q9P0J0 Q9P0J0 69 82 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 yes yes 3 9.1548E-14 123.28 By MS/MS 8 0 1 1 0 0 0 0 5697 2114 5935 24017 20310 20310 1 0 0 0 IALSPITK GWACLVCKEKLIIWKIALSPITKLSVCKEL EKLIIWKIALSPITKLSVCKELQLPPSDFH K I A T K L 1 0 0 0 0 0 0 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 8 0 841.5273 Q8WUM0 Q8WUM0 128 135 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.048786 73.26 By MS/MS 1.5 0.5 1 1 2 5798900 0 0 5798900 5698 1675 5936 24018;24019 20311 20311 1 0 0 1295400 IALTDNALIAR ELIYKRGYGKINKKRIALTDNALIARSLGK NKKRIALTDNALIARSLGKYGIICMEDLIH R I A A R S 3 1 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1169.6768 P18124 P18124 167 177 RPL7 60S ribosomal protein L7 yes yes 2 1.4495E-46 219.54 By MS/MS By MS/MS By MS/MS 5.23 2.84 3 2 2 2 2 4 2 1 2 2 1 10 11 1330500000 4884900 610480000 715130000 5699 594 5937 24020;24021;24022;24023;24024;24025;24026;24027;24028;24029;24030;24031;24032;24033;24034;24035;24036;24037;24038;24039;24040;24041 20312;20313;20314;20315;20316;20317;20318;20319;20320;20321;20322;20323;20324;20325;20326;20327;20328;20329;20330;20331;20332;20333 20319 22 4884900 228930000 119950000 IANLAYVTK GTPAPGFSSMLYGMKIANLAYVTKTRVRFF MLYGMKIANLAYVTKTRVRFFRLDRWADVR K I A T K T 2 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 9 0 991.57023 Q9HCE1 Q9HCE1 63 71 MOV10 Putative helicase MOV-10 yes yes 2 0.031575 76.827 By MS/MS 2 0 1 1 4086900 0 4086900 0 5700 2011 5938 24042 20334 20334 1 0 1840400 0 IANLQTDLSDGLR FTRWCNEHLKCVSKRIANLQTDLSDGLRLI KRIANLQTDLSDGLRLIALLEVLSQKKMHR R I A L R L 1 1 1 2 0 1 0 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1414.7416 P21333 P21333 64 76 FLNA Filamin-A yes yes 2 9.1832E-25 201.48 By MS/MS By MS/MS 3.5 2.57 2 1 1 2 3 3 61872000 0 34020000 27852000 5701 623 5939 24043;24044;24045;24046;24047;24048 20335;20336;20337;20338 20337 4 0 16613000 5668400 IANPVEGSSGR ANINEIRQMSGAQIKIANPVEGSSGRQVTI AQIKIANPVEGSSGRQVTITGSAASISLAQ K I A G R Q 1 1 1 0 0 0 1 2 0 1 0 0 0 0 1 2 0 0 0 1 0 0 11 0 1085.5465 Q15365 Q15365 315 325 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.0039573 98.048 By matching By MS/MS By MS/MS 8.67 1.89 1 2 1 1 1 9879600 7541300 0 2338200 5702 1356 5940 24049;24050;24051 20339;20340 20339 2 13739000 0 5114000 IANPVEGSTDR AKINEIRQMSGAQIKIANPVEGSTDRQVTI AQIKIANPVEGSTDRQVTITGSAASISLAQ K I A D R Q 1 1 1 1 0 0 1 1 0 1 0 0 0 0 1 1 1 0 0 1 0 0 11 0 1157.5677 Q15366 Q15366 323 333 PCBP2 Poly(rC)-binding protein 2 yes yes 2 0.0018727 109.29 By matching By MS/MS By MS/MS 7.29 2.12 2 2 1 2 1 3 3 105400000 830640 42314000 62253000 5703 1357 5941 24052;24053;24054;24055;24056;24057;24058 20341;20342;20343;20344;20345 20342 5 466240 20442000 13326000 IAPAEAPDAK QHIKQLSRFAGASIKIAPAEAPDAKVRMVI GASIKIAPAEAPDAKVRMVIITGPPEAQFK K I A A K V 4 0 0 1 0 0 1 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 10 0 981.51311 O00425 O00425 441 450 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.029444 78.149 By MS/MS By MS/MS 3 0 2 1 1 39886000 0 16496000 23390000 5704 121 5942 24059;24060 20346;20347 20347 2 0 7032100 4536600 IAPAEGPDVSER AHIKQLARFAGASIKIAPAEGPDVSERMVI SIKIAPAEGPDVSERMVIITGPPEAQFKAQ K I A E R M 2 1 0 1 0 0 2 1 0 1 0 0 0 0 2 1 0 0 0 1 0 0 12 0 1239.6095 Q9Y6M1 Q9Y6M1 463 474 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 0.018081 86.014 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 61732000 0 18588000 43144000 5705 2315 5943 24061;24062;24063;24064 20348;20349;20350 20348 3 0 7712400 8272700 IAPLEEGTLPFNLAEAQR LYEPRGRMTLADIERIAPLEEGTLPFNLAE LEEGTLPFNLAEAQRQKASGDSARPVLLQV R I A Q R Q 3 1 1 0 0 1 3 1 0 1 3 0 0 1 2 0 1 0 0 0 0 0 18 0 1968.0316 Q9UJS0 Q9UJS0 293 310 SLC25A13 Calcium-binding mitochondrial carrier protein Aralar2 yes yes 2 1.5578E-08 127.02 By MS/MS 3 0 1 1 2928500 0 0 2928500 5706 2170 5944 24065 20351 20351 1 0 0 567990 IAPPEAPVTGYMFGK SRTTNFAGILSQGLRIAPPEAPVTGYMFGK IAPPEAPVTGYMFGKGIYFADMVSKSANYC R I A G K G 2 0 0 0 0 0 1 2 0 1 0 1 1 1 3 0 1 0 1 1 0 0 15 0 1576.796 P09874 P09874 879 893 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00037695 108.35 By MS/MS By MS/MS By MS/MS 3.64 2.1 3 7 5 2 2 2 3 1 1 9 15 1308300000 17069000 310980000 980270000 5707 492 5945;5946 24066;24067;24068;24069;24070;24071;24072;24073;24074;24075;24076;24077;24078;24079;24080;24081;24082;24083;24084;24085;24086;24087;24088;24089;24090 20352;20353;20354;20355;20356;20357;20358;20359;20360;20361;20362;20363;20364;20365;20366;20367;20368;20369;20370;20371;20372;20373;20374;20375;20376 20357 204 25 20565000 137910000 210510000 IAPPETPDSK QHIKQLSRFASASIKIAPPETPDSKVRMVI SASIKIAPPETPDSKVRMVIITGPPEAQFK K I A S K V 1 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 0 0 0 0 10 0 1053.5342 Q9NZI8 Q9NZI8 441 450 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0015498 108.74 By MS/MS By MS/MS 3 0 2 1 1 67348000 0 24272000 43076000 5708 2104 5947 24091;24092 20377;20378 20378 2 0 10347000 8354800 IAPRPASGPIRPIVR RKIRRRKARQAKARRIAPRPASGPIRPIVR IAPRPASGPIRPIVRCPTVRYHTKVRAGRG R I A V R C 2 3 0 0 0 0 0 1 0 3 0 0 0 0 4 1 0 0 0 1 0 0 15 2 1598.9733 P26373 P26373 46 60 RPL13 60S ribosomal protein L13 yes yes 3;4 0.0016885 79.639 By MS/MS 6.5 0.5 2 2 4 48170000 0 48170000 0 5709 669 5948 24093;24094;24095;24096 20379;20380;20381;20382 20380 4 0 21003000 0 IAPVHIDSEAISALVK PTNPFLEMVKFLLERIAPVHIDSEAISALV APVHIDSEAISALVKLMNKSIEGTADDEEE R I A V K L 3 0 0 1 0 0 1 0 1 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1661.9352 Q29RF7 Q29RF7 618 633 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.022151 46.249 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 14935000 0 3421500 11514000 5710 1405 5949 24097;24098;24099 20383;20384 20384 2 0 1573700 2601900 IAPVHIDTESISALIK PTNPFLEMIKFLLERIAPVHIDTESISALI APVHIDTESISALIKQVNKSIDGTADDEDE R I A I K Q 2 0 0 1 0 0 1 0 1 4 1 1 0 0 1 2 1 0 0 1 0 0 16 0 1705.9614 Q9NTI5 Q9NTI5 608 623 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 4.9298E-07 163.51 By MS/MS By MS/MS 1.71 0.7 3 3 1 2 5 145470000 0 22397000 123070000 5711 2053 5950 24100;24101;24102;24103;24104;24105;24106 20385;20386;20387;20388;20389;20390;20391 20388 7 0 10269000 27037000 IAPYSVEIK ILKFLCIFLEKMGQKIAPYSVEIKNTCTSV EKMGQKIAPYSVEIKNTCTSVYTKDRAAKC K I A I K N 1 0 0 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 1 0 0 9 0 1018.5699 P78527 P78527 100 108 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.061376 68.224 By MS/MS 1 0 1 1 23334000 0 0 23334000 5712 1089 5951 24107 20392 20392 1 0 0 5027600 IAQDLEMYGVNYFSIK HRGMLREDAVLEYLKIAQDLEMYGVNYFSI AQDLEMYGVNYFSIKNKKGSELWLGVDALG K I A I K N 1 0 1 1 0 1 1 1 0 2 1 1 1 1 0 1 0 0 2 1 0 0 16 0 1889.9233 P26038 P26038 194 209 MSN Moesin yes yes 2 3.5976E-05 122.45 By MS/MS By MS/MS 3 0 2 1 1 9832000 0 2901200 6930800 5713 664 5952 24108;24109 20393;20394 20394 2 0 1236800 1344200 IAQLEAELALQK IQENQELGRQLSQGRIAQLEAELALQKKYS QGRIAQLEAELALQKKYSEELKSSQDELND R I A Q K K 3 0 0 0 0 2 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1325.7555 Q15007 Q15007 180 191 WTAP Pre-mRNA-splicing regulator WTAP yes yes 2 0.0066909 99.568 By MS/MS 4 0 1 1 9495200 0 0 9495200 5714 1328 5953 24110 20395 20395 1 0 0 1550900 IAQLEEELEEEQGNTELINDR KGALALEEKRRLEARIAQLEEELEEEQGNT ELEEEQGNTELINDRLKKANLQIDQINTDL R I A D R L 1 1 2 1 0 2 7 1 0 2 3 0 0 0 0 0 1 0 0 0 0 0 21 0 2471.1664 P35579 P35579 1731 1751 MYH9 Myosin-9 yes yes 2;3 1.0883E-298 337.89 By MS/MS 1.5 0.5 2 2 4 39534000 0 0 39534000 5715 752 5954 24111;24112;24113;24114 20396;20397;20398 20397 3 0 0 8617600 IAQLEEQLDNETK VKSKYKASITALEAKIAQLEEQLDNETKER AKIAQLEEQLDNETKERQAACKQVRRTEKK K I A T K E 1 0 1 1 0 2 3 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 13 0 1529.7573 P35579 P35579 1816 1828 MYH9 Myosin-9 yes yes 2 1.0481E-44 218.11 By MS/MS By MS/MS 2 1.07 3 2 1 1 4 3 462750000 0 351860000 110890000 5716 752 5955 24115;24116;24117;24118;24119;24120;24121 20399;20400;20401;20402;20403;20404;20405;20406 20400 8 0 171270000 23785000 IAQLEEQLDNETKER VKSKYKASITALEAKIAQLEEQLDNETKER IAQLEEQLDNETKERQAACKQVRRTEKKLK K I A E R Q 1 1 1 1 0 2 4 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 15 1 1814.901 P35579 P35579 1816 1830 MYH9 Myosin-9 yes yes 2;3 1.7546E-16 188.15 By MS/MS 1.33 0.471 2 1 3 31600000 0 31600000 0 5717 752 5956 24122;24123;24124 20407;20408 20408 2 0 15153000 0 IAQPGDHVSVTGIFLPILR IPRSITVLVEGENTRIAQPGDHVSVTGIFL GDHVSVTGIFLPILRTGFRQVVQGLLSETY R I A L R T 1 1 0 1 0 1 0 2 1 3 2 0 0 1 2 1 1 0 0 2 0 0 19 0 2032.1469 P33993 P33993 264 282 MCM7 DNA replication licensing factor MCM7 yes yes 3 6.4712E-07 108.17 By MS/MS 2.5 0.5 1 1 2 17147000 0 17147000 0 5718 733 5957 24125;24126 20409 20409 1 0 7372600 0 IAQSDYIPTQQDVLR QLNDSAAYYLNDLERIAQSDYIPTQQDVLR IAQSDYIPTQQDVLRTRVKTTGIVETHFTF R I A L R T 1 1 0 2 0 3 0 0 0 2 1 0 0 0 1 1 1 0 1 1 0 0 15 0 1745.8948 P04899 P04899 163 177 GNAI2 Guanine nucleotide-binding protein G(i) subunit alpha-2 yes yes 2 0.00054409 107.97 By MS/MS By MS/MS 6 0 2 1 1 10310000 0 5078800 5230900 5719 421 5958 24127;24128 20410;20411 20411 1 0 1758100 782600 IAQSEAELISDEAQADLALR AVLEQERRDRELALRIAQSEAELISDEAQA AELISDEAQADLALRRSLDSYPVSKNDGTR R I A L R R 5 1 0 2 0 2 3 0 0 2 3 0 0 0 0 2 0 0 0 0 0 0 20 0 2142.0804 Q9UM54 Q9UM54 1016 1035 MYO6 Unconventional myosin-VI yes yes 2 7.7168E-28 189.1 By matching By MS/MS 1.5 0.5 1 1 1 1 5983500 0 893060 5090400 5720 2198 5959 24129;24130 20412 20412 1 0 436520 1150300 IASHYYITNDTVQTYNQLLKPTLSEIELFR YDKKTGNFQVTELGRIASHYYITNDTVQTY NQLLKPTLSEIELFRVFSLSSEFKNITVRE R I A F R V 1 1 2 1 0 2 2 0 1 3 4 1 0 1 1 2 4 0 3 1 0 0 30 1 3569.8406 O75643 O75643 987 1016 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 3.4684E-19 91.66 By MS/MS 2 0 1 1 3782000 0 0 3782000 5721 277 5960 24131 20413 20413 1 0 0 854670 IASLEVENQSLR ASSGTSGDHGELVVRIASLEVENQSLRGVV VVRIASLEVENQSLRGVVQELQQAISKLEA R I A L R G 1 1 1 0 0 1 2 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1357.7201 P29692 P29692 84 95 EEF1D Elongation factor 1-delta yes yes 2 2.3607E-18 194.06 By matching By MS/MS By MS/MS 4.62 1.73 1 2 1 3 1 3 1 4 155880000 12845000 17640000 125400000 5722 702 5961 24132;24133;24134;24135;24136;24137;24138;24139 20414;20415;20416;20417 20416 4 16382000 6106400 19782000 IASLLHR LKAAVMKYGKNQWSRIASLLHRKSAKQCKA YGKNQWSRIASLLHRKSAKQCKARWYEWLD R I A H R K 1 1 0 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 7 0 808.49192 Q99459 Q99459 34 40 CDC5L Cell division cycle 5-like protein yes yes 2 0.052663 79.939 By matching By MS/MS By matching 3.25 1.3 2 1 1 1 2 1 9507000 3708200 3903000 1895700 5723 1843 5962 24140;24141;24142;24143 20418 20418 0 4467900 1656700 264420 IASLPQEVQDVSLLEK DLENAASGDATVRQKIASLPQEVQDVSLLE ASLPQEVQDVSLLEKITDKEAAERLSKTVD K I A E K I 1 0 0 1 0 2 2 0 0 1 3 1 0 0 1 2 0 0 0 2 0 0 16 0 1767.9618 Q9NQG5 Q9NQG5 201 216 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 3.5951E-05 133.05 By matching By MS/MS 6 0 2 1 1 12095000 0 2879600 9215700 5724 2033 5963 24144;24145 20419 20419 1 0 996810 1378800 IASPEGQDYLK RDKIIVNDRQLACARIASPEGQDYLKGMAA ACARIASPEGQDYLKGMAAAGNYAWVNRSS R I A L K G 1 0 0 1 0 1 1 1 0 1 1 1 0 0 1 1 0 0 1 0 0 0 11 0 1219.6085 Q9Y3I0 Q9Y3I0 298 308 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.0003529 120.99 By MS/MS 4 0 1 1 29146000 0 29146000 0 5725 2276 5964 24146 20420 20420 1 0 9672400 0 IATGHGQQGVTQVVLK SGTGAPAKIITAVPKIATGHGQQGVTQVVL ATGHGQQGVTQVVLKGAPGQPGTILRTVPM K I A L K G 1 0 0 0 0 3 0 3 1 1 1 1 0 0 0 0 2 0 0 3 0 0 16 0 1634.9104 P51610 P51610 821 836 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes yes 2 7.0592E-05 108.32 By MS/MS 1.5 0.5 1 1 2 7229300 0 0 7229300 5726 897 5965 24147;24148 20421 20421 1 0 0 1599800 IATTTASAATAAAIGATPR KASPNTRSGTRRSPRIATTTASAATAAAIG TASAATAAAIGATPRAKGKAKH________ R I A P R A 8 1 0 0 0 0 0 1 0 2 0 0 0 0 1 1 5 0 0 0 0 0 19 0 1714.9214 Q14980 Q14980 2090 2108 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 5.5792E-31 201.48 By matching By MS/MS By MS/MS 5.78 3.1 4 1 2 3 4 4 1 9 8 164030000 1449500 47639000 114950000 5727 1327 5966 24149;24150;24151;24152;24153;24154;24155;24156;24157;24158;24159;24160;24161;24162;24163;24164;24165;24166 20422;20423;20424;20425;20426;20427;20428;20429;20430;20431;20432;20433 20431 12 1449500 83467000 41674000 IAVAVLEETTR HVSRSSTPRESPCGKIAVAVLEETTRERTD PCGKIAVAVLEETTRERTDVIQGDDVADAT K I A T R E 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 2 0 0 2 0 0 11 0 1200.6714 A6NKT7;Q7Z3J3;P0DJD0;P0DJD1;P49792 P49792 2467 2477 RGPD3;RGPD4;RGPD1;RGPD2;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;E3 SUMO-protein ligase RanBP2 no no 2 0.0037512 104.48 By matching By MS/MS 1 0 2 1 1 8230900 3692000 0 4538900 5728 871;17 5967 24167;24168 20434 20434 1 3692000 0 977980 IAVEAQNKYER SNEQQARRDCQEQAKIAVEAQNKYERELML EQAKIAVEAQNKYERELMLHAADVEALQAA K I A E R E 2 1 1 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 11 1 1319.6834 P12270 P12270 1074 1084 TPR Nucleoprotein TPR yes yes 3 0.0039334 85.813 By MS/MS 1 0 1 1 5886700 0 0 5886700 5729 536 5968 24169 20435 20435 1 0 0 1268400 IAVEPVNPSELPK QIFRPLKFNTTSVIKIAVEPVNPSELPKML IKIAVEPVNPSELPKMLDGLRKVNKSYPSL K I A P K M 1 0 1 0 0 0 2 0 0 1 1 1 0 0 3 1 0 0 0 2 0 0 13 0 1391.766 Q15029 Q15029 590 602 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.00036622 126.67 By matching By MS/MS By MS/MS 3.12 1.62 1 3 1 1 1 1 1 2 5 137680000 1984800 43422000 92272000 5730 1335 5969 24170;24171;24172;24173;24174;24175;24176;24177 20436;20437;20438;20439;20440;20441 20437 6 2391400 18905000 20070000 IAVHCTVR ARYTVRSFGIRRNEKIAVHCTVRGAKAEEI GIRRNEKIAVHCTVRGAKAEEILEKGLKVR K I A V R G 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 0 1 0 0 2 0 0 8 0 954.50692 P62913 P62913 68 75 RPL11 60S ribosomal protein L11 yes yes 2 0.006677 97.798 By MS/MS 7 0 1 1 4290400 0 0 4290400 5731 1051 5970 24178 20442 20442 1 0 0 761300 IAVHPDYQGMGYGSR QDPDFGGLSGGRVVRIAVHPDYQGMGYGSR IAVHPDYQGMGYGSRALQLLQMYYEGRFPC R I A S R A 1 1 0 1 0 1 0 3 1 1 0 0 1 0 1 1 0 0 2 1 0 0 15 0 1649.762 Q9H0A0 Q9H0A0 629 643 NAT10 N-acetyltransferase 10 yes yes 2;3 2.4782E-07 167.11 By matching By MS/MS By MS/MS 2.31 0.722 1 8 3 1 2 5 6 207410000 9497300 57119000 140790000 5732 1959 5971;5972 24179;24180;24181;24182;24183;24184;24185;24186;24187;24188;24189;24190;24191 20443;20444;20445;20446;20447;20448;20449;20450 20447 684 8 11443000 25770000 30963000 IAVMELFRPK AEGLRPVKEVGMYGKIAVMELFRPKGESKD GMYGKIAVMELFRPKGESKDLLFILTAKYN K I A P K G 1 1 0 0 0 0 1 0 0 1 1 1 1 1 1 0 0 0 0 1 0 0 10 1 1202.6845 Q16531 Q16531 61 70 DDB1 DNA damage-binding protein 1 yes yes 3 0.0020008 89.886 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 16427000 0 3365900 13061000 5733 1387 5973 24192;24193;24194;24195 20451;20452;20453 20453 3 0 1515700 2875400 IAVYHLQELASAELAK LESKSGGRVQRRSAKIAVYHLQELASAELA AVYHLQELASAELAKEWPKRKVLQDLVPDD K I A A K E 4 0 0 0 0 1 2 0 1 1 3 1 0 0 0 1 0 0 1 1 0 0 16 0 1754.9567 Q96ME7 Q96ME7 345 360 ZNF512 Zinc finger protein 512 yes yes 2;3 4.5322E-05 136.3 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 1 4 33156000 0 7751800 25405000 5734 1809 5974 24196;24197;24198;24199;24200 20454;20455 20455 2 0 2572500 4328800 IAWALSR AYEDKNDIPKEKDEKIAWALSRKATLELTH IPKEKDEKIAWALSRKATLELTHNWGTEDD K I A S R K 2 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 7 0 815.46537 Q04760 Q04760 89 95 GLO1 Lactoylglutathione lyase yes yes 2 3.5415E-09 132.96 By MS/MS By MS/MS 8 1.41 2 1 1 2 11651000 0 8156300 3494300 5735 1160 5975 24201;24202;24203 20456;20457;20458 20457 3 0 4683400 7642500 IAWPPPTELGSSGSALEEGIK QQEKEDKPAETKKLRIAWPPPTELGSSGSA TELGSSGSALEEGIKMSKPKWPPEDEISKP R I A I K M 2 0 0 0 0 0 3 3 0 2 2 1 0 0 3 3 1 1 0 0 0 0 21 0 2138.0895 Q9UHB6 Q9UHB6 530 550 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 1.3199E-13 124.16 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 36132000 0 5270400 30862000 5736 2150 5976 24204;24205;24206;24207 20459;20460;20461;20462 20461 4 0 2347900 6633700 ICGDIHGQYYDLLR FLSQPILLELEAPLKICGDIHGQYYDLLRL KICGDIHGQYYDLLRLFEYGGFPPESNYLF K I C L R L 0 1 0 2 1 1 0 2 1 2 2 0 0 0 0 0 0 0 2 0 0 0 14 0 1721.8195 P62136;P36873 P62136 61 74 PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 0.002519 99.215 By MS/MS 6 0 1 1 4026300 0 0 4026300 5737 1006;763 5977 24208 20463 20463 1 0 0 602380 IDALNENK KKIIAEKTKIPAVFKIDALNENKVLVLDTD KIPAVFKIDALNENKVLVLDTDYKKYLLFC K I D N K V 1 0 2 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 8 0 915.46616 CON__P02754 CON__P02754 84 91 yes yes 2 0.0009928 121.99 By MS/MS 1 0 1 1 44328000 44328000 0 0 + 5738 43 5978 24209 20464;20465 20464 2 44328000 0 0 IDASELSFPFHESILK TTLGLEVAKQSQHDKIDASELSFPFHESIL DASELSFPFHESILKVIEEEWQQVDRQLPS K I D L K V 1 0 0 1 0 0 2 0 1 2 2 1 0 2 1 3 0 0 0 0 0 0 16 0 1831.9356 P42166 P42166 485 500 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 0.0063044 77.894 By MS/MS 3 0 1 1 12047000 0 0 12047000 5739 798 5979 24210 20466 20466 1 0 0 2336500 IDASKNEEDEGHSNSSPR SGGTEGGSAESEGAKIDASKNEEDEGHSNS SKNEEDEGHSNSSPRHSEAATAQREEWKMF K I D P R H 1 1 2 2 0 0 3 1 1 1 0 1 0 0 1 4 0 0 0 0 0 0 18 1 1970.8566 Q14103 Q14103 68 85 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 3;4 2.9287E-52 221.49 By MS/MS By MS/MS 5.08 1.44 1 1 1 4 3 2 6 6 63391000 0 52747000 10644000 5740 1281 5980 24211;24212;24213;24214;24215;24216;24217;24218;24219;24220;24221;24222 20467;20468;20469;20470;20471;20472;20473;20474;20475 20468 9 0 15494000 1576500 IDATSASVLASR ANILKDKDPPIPVAKIDATSASVLASRFDV VAKIDATSASVLASRFDVSGYPTIKILKKG K I D S R F 3 1 0 1 0 0 0 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 12 0 1189.6303 P13667 P13667 120 131 PDIA4 Protein disulfide-isomerase A4 yes yes 2 0.0035581 106.4 By MS/MS By MS/MS 3 0 2 1 1 19180000 0 8821000 10359000 5741 549 5981 24223;24224 20476;20477 20477 2 0 3760400 2009200 IDAVAWNTTPYQLAR KEPRTIKISLPGGQKIDAVAWNTTPYQLAR IDAVAWNTTPYQLARQISSTLADTAVAAQV K I D A R Q 3 1 1 1 0 1 0 0 0 1 1 0 0 0 1 0 2 1 1 1 0 0 15 0 1717.8788 Q9BW92 Q9BW92 71 85 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 2 0.00069508 100.55 By MS/MS 3 0 1 1 1988300 0 1988300 0 5742 1922 5982 24225 20478 20478 1 0 847620 0 IDCFSEVPTSVFGEK RISRYLANKCSIASRIDCFSEVPTSVFGEK IDCFSEVPTSVFGEKLREQVEERLSFYETG R I D E K L 0 0 0 1 1 0 2 1 0 1 0 1 0 2 1 2 1 0 0 2 0 0 15 0 1713.792 O00567 O00567 382 396 NOP56 Nucleolar protein 56 yes yes 2 0.0005602 107.18 By MS/MS 3 0 1 1 10397000 0 0 10397000 5743 130 5983 24226 20479 20479 1 0 0 2016500 IDDIADGAVKPPPNKYPIFFFGTHETAFLGPK LVFAKMKGYPHWPARIDDIADGAVKPPPNK IFFFGTHETAFLGPKDLFPYDKCKDKYGKP R I D P K D 3 0 1 3 0 0 1 3 1 3 1 3 0 4 5 0 2 0 1 1 0 0 32 2 3501.7973 Q7Z4V5 Q7Z4V5 25 56 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 5 2.3218E-15 83.557 By MS/MS 2 0.816 1 1 1 3 31764000 0 0 31764000 5744 1533 5984 24227;24228;24229 20480 20480 1 0 0 7046600 IDDIFER KNQTLQKEIQGHQPRIDDIFERSQNIVTDS EIQGHQPRIDDIFERSQNIVTDSSSLSAEA R I D E R S 0 1 0 2 0 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 7 0 906.4447 Q01082 Q01082 1541 1547 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.002229 132.09 By MS/MS By MS/MS 1 0 2 1 1 33446000 0 9345300 24101000 5745 1128 5985 24230;24231 20481;20482 20482 2 0 4567800 5192900 IDDMTAAPMDVR IIRHAEKAPTNIVYKIDDMTAAPMDVRQWV VYKIDDMTAAPMDVRQWVDTDDTSSENTVV K I D V R Q 2 1 0 3 0 0 0 0 0 1 0 0 2 0 1 0 1 0 0 1 0 0 12 0 1333.6006 P15927 P15927 94 105 RPA2 Replication protein A 32 kDa subunit yes yes 2 0.00010798 139.32 By MS/MS By MS/MS 6 0 2 1 1 32486000 0 4898800 27588000 5746 573 5986 24232;24233 20483;20484 20484 2 0 1695800 4127400 IDDSKEAMER RTGRSRGFAFVYFERIDDSKEAMERANGME VYFERIDDSKEAMERANGMELDGRRIRVDY R I D E R A 1 1 0 2 0 0 2 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 10 1 1192.5394 Q13595 Q13595 170 179 TRA2A Transformer-2 protein homolog alpha yes yes 2 0.024166 103.26 By MS/MS By matching 5.67 0.471 1 2 2 1 5048900 0 4315500 733370 5747 1260 5987 24234;24235;24236 20485 20485 1 0 1475800 109720 IDEAESLNDEELEEK ELPNAAQAQKEEQLKIDEAESLNDEELEEK IDEAESLNDEELEEKEKLLTQGFTNWNKRD K I D E K E 1 0 1 2 0 0 6 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1761.7792 O60264 O60264 820 834 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 1.8605E-07 168.98 By MS/MS 2 0 1 1 17097000 0 0 17097000 5748 223 5988 24237 20486 20486 1 0 0 3863600 IDEAESLNDEELEEKEK ELPNAAQAQKEEQLKIDEAESLNDEELEEK EAESLNDEELEEKEKLLTQGFTNWNKRDFN K I D E K L 1 0 1 2 0 0 7 0 0 1 2 2 0 0 0 1 0 0 0 0 0 0 17 1 2018.9168 O60264 O60264 820 836 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 2.2819E-91 254.47 By MS/MS 2 0 2 2 65803000 0 0 65803000 5749 223 5989 24238;24239 20487;20488 20488 2 0 0 14870000 IDEINKELNQVMEQLGDAR LEGELTEEVEMAKRRIDEINKELNQVMEQL NKELNQVMEQLGDARIDRQESSRQQRKAEI R I D A R I 1 1 2 2 0 2 3 1 0 2 2 1 1 0 0 0 0 0 0 1 0 0 19 1 2214.095 Q14683 Q14683 470 488 SMC1A Structural maintenance of chromosomes protein 1A yes yes 3 8.7936E-18 181.86 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 16372000 0 5028000 11344000 5750 1312 5990 24240;24241;24242 20489;20490 20489 2 0 2264200 2496300 IDELPEGAVKPPANK LVFAKMKGYPHWPARIDELPEGAVKPPANK IDELPEGAVKPPANKYPIFFFGTHETAFLG R I D N K Y 2 0 1 1 0 0 2 1 0 1 1 2 0 0 3 0 0 0 0 1 0 0 15 1 1576.8461 Q9Y3E1 Q9Y3E1 29 43 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes yes 3 0.0015562 79.875 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 62055000 0 4685200 57370000 5751 2273 5991 24243;24244;24245;24246;24247 20491;20492;20493 20492 3 0 2033800 9136400 IDEPLEGSEDR QRIKQIRHESGASIKIDEPLEGSEDRIITI ASIKIDEPLEGSEDRIITITGTQDQIQNAQ K I D D R I 0 1 0 2 0 0 3 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 11 0 1258.5677 P61978 P61978 423 433 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 1.2001E-26 201.18 By MS/MS By MS/MS By MS/MS 3.29 1.67 2 1 3 1 1 2 4 306180000 19719000 15497000 270970000 5752 1002 5992 24248;24249;24250;24251;24252;24253;24254 20494;20495;20496;20497;20498;20499;20500;20501 20499 8 15385000 5565900 45404000 IDFGTHISGR NAGDTTVLQYDDICKIDFGTHISGRIIDCA DDICKIDFGTHISGRIIDCAFTVTFNPKYD K I D G R I 0 1 0 1 0 0 0 2 1 2 0 0 0 1 0 1 1 0 0 0 0 0 10 0 1101.5567 P50579 P50579 250 259 METAP2 Methionine aminopeptidase 2 yes yes 2 0.060657 70.056 By MS/MS 2.5 1.12 1 1 1 1 4 23268000 0 23268000 0 5753 881 5993 24255;24256;24257;24258 20502 20502 1 0 9053500 0 IDFLPHYDTLVK LQSVNQLLLTATKERIDFLPHYDTLVKSGM KERIDFLPHYDTLVKSGMYEYYASEGQNPL R I D V K S 0 0 0 2 0 0 0 0 1 1 2 1 0 1 1 0 1 0 1 1 0 0 12 0 1459.7711 A6NHR9 A6NHR9 115 126 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.046398 47.039 By MS/MS By matching 1.5 0.5 1 1 1 1 3821100 0 2440300 1380900 5754 15 5994 24259;24260 20503 20503 1 0 1192800 312050 IDFYFDENPYFENK RVEVTEFEDIKSGYRIDFYFDENPYFENKV RIDFYFDENPYFENKVLSKEFHLNESGDPS R I D N K V 0 0 2 2 0 0 2 0 0 1 0 1 0 3 1 0 0 0 2 0 0 0 14 0 1839.7992 Q01105;P0DME0 Q01105 137 150 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.00016998 152.54 By matching By MS/MS 6 0.707 1 2 1 1 3 29169000 0 499120 28670000 5755 1130 5995 24261;24262;24263;24264 20504;20505 20504 2 0 172780 4270800 IDGGITGNMR LLEDFLEHEGYKYERIDGGITGNMRQEAID YKYERIDGGITGNMRQEAIDRFNAPGAQQF R I D M R Q 0 1 1 1 0 0 0 3 0 2 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1032.5022 Q14839 Q14839 1096 1105 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00010577 146.03 By matching By MS/MS 1 0 2 1 1 19765000 2402600 17363000 0 5756 1321 5996 24265;24266 20506 20506 1 2402600 8486700 0 IDGITIQAR KHALLEADVAAHQDRIDGITIQARQFQDAG AAHQDRIDGITIQARQFQDAGHFDAENIKK R I D A R Q 1 1 0 1 0 1 0 1 0 3 0 0 0 0 0 0 1 0 0 0 0 0 9 0 985.55564 Q13813 Q13813 734 742 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0005485 117.4 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 48661000 2005500 21325000 25330000 5757 1268 5997 24267;24268;24269;24270 20507;20508 20508 2 2005500 10424000 5503700 IDGLLIDQIQR RYFGGMVWYFVNNKKIDGLLIDQIQRDLID NNKKIDGLLIDQIQRDLIDDATNLVQLYHV K I D Q R D 0 1 0 2 0 2 0 1 0 3 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1282.7245 P82650 P82650 281 291 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 2 0.00086084 115.78 By MS/MS By MS/MS 6 0 2 1 1 7254400 0 2486200 4768300 5758 1096 5998 24271;24272 20509;20510 20509 2 0 860630 713380 IDGPVISESTPIAETIMASSNESLVVNR RRTPRKRVETSEHFRIDGPVISESTPIAET ETIMASSNESLVVNRVTGNFKHASPILPIT R I D N R V 2 1 2 1 0 0 3 1 0 4 1 0 1 0 2 5 2 0 0 3 0 0 28 0 2928.475 P42167 P42167 270 297 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2;3 8.7246E-54 187.39 By MS/MS 3.6 1.02 1 1 2 1 5 74987000 0 0 74987000 5759 799 5999 24273;24274;24275;24276;24277 20511;20512 20512 2 0 0 12403000 IDGVSLLVQR LPDKHSLAFVVRIERIDGVSLLVQRTIARL VRIERIDGVSLLVQRTIARLRLKKIFSGVF R I D Q R T 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 10 0 1098.6397 Q6DKI1 Q6DKI1 105 114 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2 8.3173E-11 166.3 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 110040000 0 34440000 75596000 5760 1471 6000 24278;24279;24280;24281 20513;20514;20515;20516 20515 4 0 14496000 11986000 IDHILDAL NEKLISGKRQELVTKIDHILDAL_______ RQELVTKIDHILDAL_______________ K I D A L - 1 0 0 2 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 8 0 908.49673 P04843 P04843 600 607 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.026229 79.454 By MS/MS 3 0 1 1 22178000 0 0 22178000 5761 419 6001 24282 20517 20517 1 0 0 4301400 IDIIPNPQER SLTDPSKLDSGKELKIDIIPNPQERTLTLV GKELKIDIIPNPQERTLTLVDTGIGMTKAD K I D E R T 0 1 1 1 0 1 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 0 10 0 1193.6404 P08238;Q58FF7 P08238 73 82 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 yes no 2 0.0041356 99.802 By MS/MS By MS/MS By MS/MS 4.71 2.66 2 2 2 1 1 2 4 28605000 0 3585200 25020000 5762 469 6002 24283;24284;24285;24286;24287;24288;24289 20518;20519;20520;20521;20522 20522 5 0 2058700 5722900 IDILTELR VDSYATQLEAILEQKIDILTELRDKVKSFR EAILEQKIDILTELRDKVKSFRAALQEEEQ K I D L R D 0 1 0 1 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 8 0 971.56515 O00139 O00139 671 678 KIF2A Kinesin-like protein KIF2A yes yes 2 4.1029E-09 170.32 By matching By MS/MS 2.33 0.471 2 1 1 2 20203000 0 2001300 18202000 5763 104 6003 24290;24291;24292 20523;20524 20524 2 0 901200 3660600 IDISNVK LRRTHQKFVIATSTKIDISNVKIPKHLTDA FVIATSTKIDISNVKIPKHLTDAYFKKKKL K I D V K I 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 1 0 0 7 0 787.44397 Q02878 Q02878 201 207 RPL6 60S ribosomal protein L6 yes yes 1 0.068913 65.88 By matching By matching By MS/MS 6 0.707 1 2 1 1 1 2 21189000 4163300 5816200 11210000 5764 1149 6004 24293;24294;24295;24296 20525 20525 0 3335300 2013400 1742400 IDISPSTFR QEAAKNKKSPEIHRRIDISPSTFRKHGLAH PEIHRRIDISPSTFRKHGLAHDEMKSPREP R I D F R K 0 1 0 1 0 0 0 0 0 2 0 0 0 1 1 2 1 0 0 0 0 0 9 0 1034.5397 Q9Y2W1 Q9Y2W1 679 687 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.00038975 137.9 By MS/MS 1.5 0.5 1 1 2 12915000 0 0 12915000 5765 2252 6005 24297;24298 20526 20526 1 0 0 2873400 IDISPSTLR EEHSTRQKSPEIHRRIDISPSTLRKHTRLA PEIHRRIDISPSTLRKHTRLAGEERVFKEE R I D L R K 0 1 0 1 0 0 0 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 9 0 1000.5553 Q9NYF8 Q9NYF8 655 663 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.0085534 98.904 By matching By MS/MS 2 0 2 1 1 6635600 1478200 0 5157500 5766 2097 6006 24299;24300 20527 20527 0 1781000 0 1165500 IDISPVLLQK AGFVNHFGRSMSVEKIDISPVLLQKGSTKI MSVEKIDISPVLLQKGSTKIALYGLGSIPD K I D Q K G 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 1 0 0 0 1 0 0 10 0 1124.6805 P49959 P49959 162 171 MRE11A Double-strand break repair protein MRE11A yes yes 2 0.017169 84.615 By MS/MS 3 0 1 1 17086000 0 0 17086000 5767 875 6007 24301 20528 20528 1 0 0 3313800 IDKPILK SANRAVVGVVAGGGRIDKPILKAGRAYHKY GVVAGGGRIDKPILKAGRAYHKYKAKRNCW R I D L K A 0 0 0 1 0 0 0 0 0 2 1 2 0 0 1 0 0 0 0 0 0 0 7 1 825.53239 P62917 P62917 175 181 RPL8 60S ribosomal protein L8 yes yes 2 0.0075424 114.43 By MS/MS 7 0 1 1 0 0 0 0 5768 1052 6008 24302 20529 20529 1 0 0 0 IDKYTEVLK LMRLRKQAEKNVEKKIDKYTEVLKTHGLLV KNVEKKIDKYTEVLKTHGLLV_________ K I D L K T 0 0 0 1 0 0 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 9 1 1107.6176 P40429 P40429 189 197 RPL13A 60S ribosomal protein L13a yes yes 2 0.00033459 148.69 By MS/MS By matching 7 0 2 1 1 28635000 0 10413000 18223000 5769 784 6009 24303;24304 20530 20530 1 0 5979000 3233500 IDLAVLLGK VPLPAENVTITAGQRIDLAVLLGKTPSTME ITAGQRIDLAVLLGKTPSTMENDSSNLDPS R I D G K T 1 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 0 1 0 0 9 0 940.59572 Q14157 Q14157 282 290 UBAP2L Ubiquitin-associated protein 2-like yes yes 2 0.0066383 94.114 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 8312200 0 2881100 5431100 5770 1287 6010 24305;24306;24307;24308 20531;20532 20531 2 0 1297400 1171100 IDLNLLTR SPLSEPDDRYPLIVKIDLNLLTRIPGKPYK RYPLIVKIDLNLLTRIPGKPYKETEPPKGE K I D T R I 0 1 1 1 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 956.56548 Q9UHB7 Q9UHB7 718 725 AFF4 AF4/FMR2 family member 4 yes yes 2 0.0014977 114.99 By MS/MS 2 0 1 1 3718700 0 0 3718700 5771 2151 6011 24309 20533 20533 1 0 0 840360 IDLPAENSNSETIIITGK GGANIKKIREESNTKIDLPAENSNSETIII PAENSNSETIIITGKRANCEAARSRILSIQ K I D G K R 1 0 2 1 0 0 2 1 0 4 1 1 0 0 1 2 2 0 0 0 0 0 18 0 1913.9946 Q00341 Q00341 615 632 HDLBP Vigilin yes yes 2 0.034732 54.402 By MS/MS 2 0 1 1 4428400 0 0 4428400 5772 1122 6012 24310 20534 20534 1 0 0 1000700 IDLRPVLGEGVPILASFLR TTVKALTLIAGSPLKIDLRPVLGEGVPILA PVLGEGVPILASFLRKNQRALKLGTLSALD K I D L R K 1 2 0 1 0 0 1 2 0 2 4 0 0 1 2 1 0 0 0 2 0 0 19 1 2064.2095 Q86VP6 Q86VP6 642 660 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 3 0.026619 40.81 By MS/MS 2 0.816 1 1 1 3 8063400 0 0 8063400 5773 1554 6013 24311;24312;24313 20535;20536 20535 2 0 0 1794100 IDLTLLNR CNVMLESRFEKMYEKIDLTLLNRLLRLIVD FEKMYEKIDLTLLNRLLRLIVDHNIADYMT K I D N R L 0 1 1 1 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 8 0 956.56548 Q6P2Q9 Q6P2Q9 988 995 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 4.7929E-28 198.73 By matching By MS/MS By MS/MS 1.5 0.866 3 1 1 1 2 70141000 1640100 32856000 35645000 5774 1490 6014 24314;24315;24316;24317 20537;20538 20538 2 1640100 16060000 7586500 IDNDGDGFVTTEELK TPDESKERLGKIVDRIDNDGDGFVTTEELK IDNDGDGFVTTEELKTWIKRVQKRYIFDNV R I D L K T 0 0 1 3 0 0 2 2 0 1 1 1 0 1 0 0 2 0 0 1 0 0 15 0 1651.7577 Q15293 Q15293 91 105 RCN1 Reticulocalbin-1 yes yes 2 0.00035161 134.99 By MS/MS 7 2 1 1 1 1 1 1 1 7 67872000 0 0 67872000 5775 1354 6015 24318;24319;24320;24321;24322;24323;24324 20539;20540;20541;20542 20541 4 0 0 13098000 IDNLDVNR SRLQRIHAEIKNSLKIDNLDVNRCIEALDE EIKNSLKIDNLDVNRCIEALDELASLQVTM K I D N R C 0 1 2 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.48796 O75475 O75475 365 372 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 5.3875E-05 150.17 By MS/MS By MS/MS 3 0 2 1 1 50397000 0 11746000 38651000 5776 262 6016 24325;24326 20543;20544 20543 2 0 5007300 7496500 IDPLALVQAIER PDCANVKQWKGGPVKIDPLALVQAIERYLV PVKIDPLALVQAIERYLVVRGYGRVREDDE K I D E R Y 2 1 0 1 0 1 1 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 12 0 1336.7715 Q14669 Q14669 1289 1300 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.00089516 119.34 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 11700000 0 5640500 6059100 5777 1308 6017 24327;24328;24329;24330 20545;20546;20547 20547 3 0 2648200 1309300 IDPTVLLGALPLR RGKVPGRAHRDWYHRIDPTVLLGALPLRSL HRIDPTVLLGALPLRSLTRQLVQDENVRGV R I D L R S 1 1 0 1 0 0 0 1 0 1 4 0 0 0 2 0 1 0 0 1 0 0 13 0 1376.8391 Q8WUK0 Q8WUK0 41 53 PTPMT1 Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 yes yes 2 0.0064591 96.342 By MS/MS 7 0 1 1 2415700 0 2415700 0 5778 1674 6018 24331 20548 20548 1 0 1387100 0 IDQTVEELRR LKGRLTPYADEFKVKIDQTVEELRRSLAPY EFKVKIDQTVEELRRSLAPYAQDTQEKLNH K I D R R S 0 2 0 1 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 1 1257.6677 P06727 P06727 212 221 APOA4 Apolipoprotein A-IV yes yes 3 0.0011296 94.692 By MS/MS 9 0 1 1 5880600 5880600 0 0 5779 446 6019 24332 20549 20549 1 3300800 0 0 IDSDLGDAWAFFYK RKITKAREWFHRTVKIDSDLGDAWAFFYKF KIDSDLGDAWAFFYKFELQHGTEEQQEEVR K I D Y K F 2 0 0 3 0 0 0 1 0 1 1 1 0 2 0 1 0 1 1 0 0 0 14 0 1646.7617 O94906 O94906 870 883 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00043051 122.42 By MS/MS 2 0.816 1 1 1 3 11152000 0 0 11152000 5780 305 6020 24333;24334;24335 20550 20550 1 0 0 2439600 IDSGLYLGSGYFTAIQNLR LFKDSAIGFSRVPPRIDSGLYLGSGYFTAI LYLGSGYFTAIQNLRKSEEEVAARRARVVW R I D L R K 1 1 1 1 0 1 0 3 0 2 3 0 0 1 0 2 1 0 2 0 0 0 19 0 2087.0688 P02788 P02788 333 351 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2;3 4.1759E-09 150.21 By MS/MS 5.6 2.58 1 1 1 1 1 5 19540000 19540000 0 0 5781 400 6021 24336;24337;24338;24339;24340 20551;20552;20553;20554 20553 4 15524000 0 0 IDSIPHLNNSTPLVDPSVYGYGVQK GFVDALHRVRQIAAKIDSIPHLNNSTPLVD TPLVDPSVYGYGVQKRPLDDGVGNQLGALV K I D Q K R 0 0 2 2 0 1 0 2 1 2 2 1 0 0 3 3 1 0 2 3 0 0 25 0 2712.3759 Q96I24 Q96I24 33 57 FUBP3 Far upstream element-binding protein 3 yes yes 3 1.281E-28 139.46 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 154560000 0 115650000 38913000 5782 1797 6022 24341;24342;24343;24344 20555;20556;20557 20556 3 0 41052000 7547200 IDSLSAQLSQLQK LVGAAHEELQQSRIRIDSLSAQLSQLQKQL IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I D Q K Q 1 0 0 1 0 3 0 0 0 1 3 1 0 0 0 3 0 0 0 0 0 0 13 0 1429.7777 P02545 P02545 299 311 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 2.9374E-126 277.7 By MS/MS By MS/MS By MS/MS 3 1.33 3 3 5 3 3 2 7 8 1041600000 19303000 346780000 675470000 5783 387 6023 24345;24346;24347;24348;24349;24350;24351;24352;24353;24354;24355;24356;24357;24358;24359;24360;24361 20558;20559;20560;20561;20562;20563;20564;20565;20566;20567;20568;20569 20560 12 22067000 131960000 126010000 IDTIEIITDR TEEHHLRDYFEEYGKIDTIEIITDRQSGKK EEYGKIDTIEIITDRQSGKKRGFGFVTFDD K I D D R Q 0 1 0 2 0 0 1 0 0 4 0 0 0 0 0 0 2 0 0 0 0 0 10 0 1187.6398 P22626 P22626 138 147 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 1.351E-29 199.7 By MS/MS By MS/MS By MS/MS 5.29 2.19 2 1 2 4 3 2 2 1 2 5 10 1204800000 17180000 166280000 1021300000 5784 632 6024 24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372;24373;24374;24375;24376;24377;24378 20570;20571;20572;20573;20574;20575;20576;20577;20578;20579;20580;20581;20582;20583;20584;20585;20586;20587;20588 20583 18 13863000 57281000 153260000 IDTQQLDR SQQPVSEVSTIPCPRIDTQQLDRQIKAIMK STIPCPRIDTQQLDRQIKAIMKEVIPFLKE R I D D R Q 0 1 0 2 0 2 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 987.49852 Q15154 Q15154 1588 1595 PCM1 Pericentriolar material 1 protein yes yes 2 0.002672 107.66 By MS/MS 1 0 1 1 3160600 0 3160600 0 5785 1349 6025 24379 20589 20589 1 0 1544900 0 IDVEILR SFTETSYVTEVEENRIDVEILRMKVQDQDL VTEVEENRIDVEILRMKVQDQDLPNTPHSK R I D L R M 0 1 0 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 7 0 856.50182 Q08554 Q08554 368 374 DSC1 Desmocollin-1 yes yes 2 0.01289 115.46 By MS/MS By matching 2.25 1.64 2 1 1 2 2 23812000 7068400 0 16744000 5786 1185 6026 24380;24381;24382;24383 20590;20591 20591 2 6185300 0 3725800 IDVHWTR KKKLKCLAYDFYPGKIDVHWTRAGEVQEPE AYDFYPGKIDVHWTRAGEVQEPELRGDVLH K I D T R A 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 7 0 925.477 P25311 P25311 235 241 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 0.010108 120.65 By MS/MS 4.43 2.77 1 1 1 1 1 1 1 7 144660000 144660000 0 0 5787 656 6027 24384;24385;24386;24387;24388;24389;24390 20592;20593;20594;20595 20594 4 168230000 0 0 IDVIDWLVFDPAQR APALDTGTTEEDRLKIDVIDWLVFDPAQRA KIDVIDWLVFDPAQRAEALKQGNAIMRKFL K I D Q R A 1 1 0 3 0 1 0 0 0 2 1 0 0 1 1 0 0 1 0 2 0 0 14 0 1685.8777 P57740 P57740 672 685 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 0.00078201 113.63 By MS/MS 1.67 0.471 1 2 3 11991000 0 0 11991000 5788 956 6028 24391;24392;24393 20596;20597 20597 2 0 0 2666800 IDVLLQQIEELGSEGK PTGKNEEKIQVLTDKIDVLLQQIEELGSEG DVLLQQIEELGSEGKVEEAQGMMKLVEQLK K I D G K V 0 0 0 1 0 2 3 2 0 2 3 1 0 0 0 1 0 0 0 1 0 0 16 0 1769.9411 O95232 O95232 136 151 LUC7L3 Luc7-like protein 3 yes yes 2 6.1566E-09 172.76 By MS/MS 3.5 0.5 1 1 2 48822000 0 0 48822000 5789 312 6029 24394;24395 20598;20599 20598 2 0 0 8094400 IDVLLQQIEELGSEGKVEEAQGMMK PTGKNEEKIQVLTDKIDVLLQQIEELGSEG LGSEGKVEEAQGMMKLVEQLKEERELLRST K I D M K L 1 0 0 1 0 3 5 3 0 2 3 2 2 0 0 1 0 0 0 2 0 0 25 1 2773.3878 O95232 O95232 136 160 LUC7L3 Luc7-like protein 3 yes yes 3 1.0408E-29 153.56 By MS/MS 3.5 0.5 1 1 2 24661000 0 0 24661000 5790 312 6030 24396;24397 20600 20600 1 0 0 4107500 IDVPTLGPK VLMVEGSGLLLGNLKIDVPTLGPKEGSRVR LLGNLKIDVPTLGPKEGSRVRFDILPSRSG K I D P K E 0 0 0 1 0 0 0 1 0 1 1 1 0 0 2 0 1 0 0 1 0 0 9 0 938.54368 Q08188 Q08188 644 652 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.00069532 114.28 By MS/MS 6.57 2.77 1 1 1 1 1 1 1 7 37700000 37700000 0 0 5791 1181 6031 24398;24399;24400;24401;24402;24403;24404 20601;20602 20601 2 45491000 0 0 IDVVVNNAGILR EGEKVVKTALDAFGRIDVVVNNAGILRDRS FGRIDVVVNNAGILRDRSFARISDEDWDII R I D L R D 1 1 2 1 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 3 0 0 12 0 1281.7405 P51659 P51659 93 104 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 2 0.00069997 121.73 By MS/MS 6 3 1 1 2 4053100 0 4053100 0 5792 898 6032 24405;24406 20603;20604 20603 2 0 1897400 0 IDYGEYMDK YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ IYLEGKIDYGEYMDKNNVRRQATTIIADNI K I D D K N 0 0 0 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 2 0 0 0 9 0 1132.4747 Q04837 Q04837 114 122 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2 0.0098012 88.948 By MS/MS 8.5 0.5 1 1 2 27953000 0 0 27953000 5793 1161 6033 24407;24408 20605;20606 20605 2 0 0 4285500 IDYGEYMDKNNVR YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQ GKIDYGEYMDKNNVRRQATTIIADNIIFLS K I D V R R 0 1 2 2 0 0 1 1 0 1 0 1 1 0 0 0 0 0 2 1 0 0 13 1 1615.7301 Q04837 Q04837 114 126 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2;3 0.00059303 155.11 By MS/MS 8.5 0.5 2 2 4 41878000 0 0 41878000 5794 1161 6034 24409;24410;24411;24412 20607;20608;20609 20609 3 0 0 9670700 IDYPPEFHQRPGYLK RPEDYDIHNSRKKPRIDYPPEFHQRPGYLK IDYPPEFHQRPGYLKDPRYQEVDRRFSGVR R I D L K D 0 1 0 1 0 1 1 1 1 1 1 1 0 1 3 0 0 0 2 0 0 0 15 1 1858.9366 Q96MU7 Q96MU7 551 565 YTHDC1 YTH domain-containing protein 1 yes yes 3;4 0.018717 54.898 By matching By MS/MS 2.33 0.471 2 1 1 2 21485000 0 2150700 19334000 5795 1813 6035 24413;24414;24415 20610;20611 20610 2 0 968470 3974200 IEAINQAIANEYEVR KPLLKKPMGPAHWEKIEAINQAIANEYEVR IEAINQAIANEYEVRRKLLIKRLDVTVQSF K I E V R R 3 1 2 0 0 1 3 0 0 3 0 0 0 0 0 0 0 0 1 1 0 0 15 0 1731.8792 Q8NCA5 Q8NCA5 204 218 FAM98A Protein FAM98A yes yes 2 0.00028316 129.84 By MS/MS 4 0 1 1 19996000 0 0 19996000 5796 1632 6036 24416 20612 20612 1 0 0 3266000 IEAITSSGQMGSFIR FWKMLILIKEDYFPRIEAITSSGQMGSFIR IEAITSSGQMGSFIRLKQFLEKCLQHKDIP R I E I R L 1 1 0 0 0 1 1 2 0 3 0 0 1 1 0 3 1 0 0 0 0 0 15 0 1595.7977 Q53GS7 Q53GS7 656 670 GLE1 Nucleoporin GLE1 yes yes 2 2.3924E-11 174.84 By MS/MS By MS/MS 5 2.83 2 1 2 1 14337000 0 4378900 9958300 5797 1425 6037 24417;24418;24419 20613;20614;20615 20615 3 0 2207900 1931400 IEALQNHENESVYK EKLSIMIEECGGLDKIEALQNHENESVYKA KIEALQNHENESVYKASLSLIEKYFSVEEE K I E Y K A 1 0 2 0 0 1 3 0 1 1 1 1 0 0 0 1 0 0 1 1 0 0 14 0 1672.8057 P52292 P52292 473 486 KPNA2 Importin subunit alpha-1 yes yes 3 0.0035774 74.678 By matching By MS/MS 4.33 0.471 2 1 1 2 44922000 1743600 0 43179000 5798 903 6038 24420;24421;24422 20616 20616 1 1360400 0 6955300 IEASLQHEITR QQLLAQNLQLPPEARIEASLQHEITRLTNE PEARIEASLQHEITRLTNENLDLMEQLEKQ R I E T R L 1 1 0 0 0 1 2 0 1 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1295.6834 Q9Y4I1 Q9Y4I1 1397 1407 MYO5A Unconventional myosin-Va yes yes 3 0.016457 65.842 By MS/MS 1 0 1 1 5546800 0 5546800 0 5799 2287 6039 24423 20617 20617 1 0 2711200 0 IECVSAETTEDCIAK ERLKCDEWSVNSVGKIECVSAETTEDCIAK IECVSAETTEDCIAKIMNGEADAMSLDGGF K I E A K I 2 0 0 1 2 0 3 0 0 2 0 1 0 0 0 1 2 0 0 1 0 0 15 0 1724.7597 P02787 P02787 385 399 TF Serotransferrin yes yes 2 1.4821E-11 178.81 By MS/MS 9 0 1 1 31539000 31539000 0 0 5800 399 6040 24424 20618 20618 1 17703000 0 0 IEDDNDNAPYFEHR ADGYAPEYPLPLIIKIEDDNDNAPYFEHRV KIEDDNDNAPYFEHRVTIFTVPENCRSGTS K I E H R V 1 1 2 3 0 0 2 0 1 1 0 0 0 1 1 0 0 0 1 0 0 0 14 0 1733.7281 Q08554 Q08554 232 245 DSC1 Desmocollin-1 yes yes 2;3 3.9532E-17 188.06 By MS/MS By matching 5.45 3.03 2 1 1 3 1 2 1 8 3 120850000 98986000 0 21864000 5801 1185 6041 24425;24426;24427;24428;24429;24430;24431;24432;24433;24434;24435 20619;20620;20621;20622;20623;20624 20622 6 77979000 0 10422000 IEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI K I E E R R 0 1 0 1 0 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 920.46035 P46781 P46781 102 108 RPS9 40S ribosomal protein S9 yes yes 2 3.2204E-08 173.59 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 209300000 0 11651000 197650000 5802 831 6042 24436;24437;24438;24439 20625;20626;20627;20628 20628 4 0 6690300 34510000 IEDLEEGQQVIR KDLMHGLITLMLDSRIEDLEEGQQVIRSVN DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ R I E I R S 0 1 0 1 0 2 3 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 12 0 1427.7256 Q14008 Q14008 1655 1666 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00046339 126.55 By MS/MS 1 0 1 1 72801000 0 0 72801000 5803 1279 6043 24440 20629 20629 1 0 0 15686000 IEDLGAAMEEALILDNK RKHQEIRAMRSQLKKIEDLGAAMEEALILD DLGAAMEEALILDNKYTEHSTVGLAQQWDQ K I E N K Y 3 0 1 2 0 0 3 1 0 2 3 1 1 0 0 0 0 0 0 0 0 0 17 0 1843.9237 Q13813 Q13813 2265 2281 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 1.2477E-05 110.29 By MS/MS 1 0 1 1 3513800 0 0 3513800 5804 1268 6044 24441 20630 20630 1 0 0 757110 IEDLSQQAQLAAAEK KSPASDTYIVFGEAKIEDLSQQAQLAAAEK IEDLSQQAQLAAAEKFKVQGEAVSNIQENT K I E E K F 4 0 0 1 0 3 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 15 0 1613.8261 E9PAV3;Q13765 E9PAV3 1991 2005 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 2 5.8609E-25 198.14 By matching By MS/MS By MS/MS 6.4 0.49 3 2 1 2 2 109710000 2301700 13535000 93878000 5805 102 6045 24442;24443;24444;24445;24446 20631;20632;20633 20632 3 3064800 5278000 14466000 IEDSTGLNRPGPAPLSSR ASENGLEDIDRILERIEDSTGLNRPGPAPL STGLNRPGPAPLSSRKHVLYVEHRHLNPDT R I E S R K 1 2 1 1 0 0 1 2 0 1 2 0 0 0 3 3 1 0 0 0 0 0 18 1 1865.9595 Q9BQ70 Q9BQ70 157 174 TCF25 Transcription factor 25 yes yes 3 1.9454E-10 161.14 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 26233000 0 13624000 12609000 5806 1880 6046 24447;24448;24449 20634;20635;20636 20634 3 0 5326700 2445500 IEDVTPIPSDSTR SALRALARSGMKIGRIEDVTPIPSDSTRRK GRIEDVTPIPSDSTRRKGGRRGRRL_____ R I E T R R 0 1 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 13 0 1428.7096 P62263 P62263 129 141 RPS14 40S ribosomal protein S14 yes yes 2 0.00027177 141.91 By MS/MS By MS/MS By MS/MS 8.25 1.09 1 2 1 1 1 2 223800000 8026000 28786000 186990000 5807 1012 6047 24450;24451;24452;24453 20637;20638;20639;20640;20641 20637 5 6890600 16529000 40019000 IEDVTPIPSDSTRR SALRALARSGMKIGRIEDVTPIPSDSTRRK RIEDVTPIPSDSTRRKGGRRGRRL______ R I E R R K 0 2 0 2 0 0 1 0 0 2 0 0 0 0 2 2 2 0 0 1 0 0 14 1 1584.8107 P62263 P62263 129 142 RPS14 40S ribosomal protein S14 yes yes 2;3 4.465E-17 190.86 By MS/MS By MS/MS 7.43 0.728 1 2 4 4 3 89321000 0 49165000 40156000 5808 1012 6048 24454;24455;24456;24457;24458;24459;24460 20642;20643;20644;20645;20646;20647 20644 6 0 23500000 6318000 IEEELGSK PCRSERLAKYNQLLRIEEELGSKAKFAGRN KYNQLLRIEEELGSKAKFAGRNFRNPLAK_ R I E S K A 0 0 0 0 0 0 3 1 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 0 903.45493 P06733 P06733 413 420 ENO1 Alpha-enolase yes yes 2 0.00068011 113.41 By MS/MS By MS/MS 7.25 2.28 2 1 1 1 3 6469300 0 0 6469300 5809 448 6049 24461;24462;24463;24464 20648;20649;20650 20648 3 0 0 5461400 IEEGTYGVVYR LQGCRSVEEFQCLNRIEEGTYGVVYRAKDK CLNRIEEGTYGVVYRAKDKKTDEIVALKRL R I E Y R A 0 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 1 0 2 2 0 0 11 0 1284.635 P21127;Q9UQ88 P21127 444 454 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 1.7556E-06 153.08 By MS/MS By MS/MS 2 0 2 1 1 21738000 0 3565600 18172000 5810 620 6050 24465;24466 20651;20652 20652 1 0 1605600 4106600 IEEIEREIIK SSFKVAQYVVREEDKIEEIEREIIKQEENV REEDKIEEIEREIIKQEENVDPDYWEKLLR K I E I K Q 0 1 0 0 0 0 4 0 0 4 0 1 0 0 0 0 0 0 0 0 0 0 10 1 1270.7133 Q12873 Q12873 1299 1308 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.0024201 124.08 By MS/MS 5.33 3.2 1 1 1 1 1 1 6 85882000 85882000 0 0 5811 1205 6051 24467;24468;24469;24470;24471;24472 20653;20654;20655;20656 20655 4 86301000 0 0 IEEIKDFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN K I E A R R 1 1 0 1 0 0 2 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 12 1 1446.8082 P63173 P63173 5 16 RPL38 60S ribosomal protein L38 yes yes 3 3.531E-05 135.6 By MS/MS By MS/MS 9.25 0.829 1 1 2 1 3 46408000 0 10565000 35844000 5812 1064 6052 24473;24474;24475;24476 20657;20658;20659;20660 20657 4 0 53448000 13444000 IEEMLENAER NPKVTQAIQSFCLEKIEEMLENAERERLGN FCLEKIEEMLENAERERLGNSHQPEKPLVR K I E E R E 1 1 1 0 0 0 4 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1232.5707 P49959 P49959 340 349 MRE11A Double-strand break repair protein MRE11A yes yes 2 0.0025954 105.1 By MS/MS 3.5 0.5 1 1 2 10193000 0 0 10193000 5813 875 6053 24477;24478 20661 20661 1 0 0 1830900 IEENSLKEEESIEGEK PNTPAPVPPAEDGIKIEENSLKEEESIEGE EENSLKEEESIEGEKEVKSTAPETAIECTQ K I E E K E 0 0 1 0 0 0 7 1 0 2 1 2 0 0 0 2 0 0 0 0 0 0 16 1 1861.8793 Q14839 Q14839 1566 1581 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2;3 1.7714E-25 202.4 By MS/MS By MS/MS 1 0 3 1 2 40040000 0 4623500 35416000 5814 1321 6054 24479;24480;24481 20662;20663;20664 20664 3 0 2259900 7631000 IEENSLKEEESIEGEKEVK PNTPAPVPPAEDGIKIEENSLKEEESIEGE SLKEEESIEGEKEVKSTAPETAIECTQAPA K I E V K S 0 0 1 0 0 0 8 1 0 2 1 3 0 0 0 2 0 0 0 1 0 0 19 2 2218.0853 Q14839 Q14839 1566 1584 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 4.9272E-14 174.02 By MS/MS 1 0 1 1 19311000 0 0 19311000 5815 1321 6055 24482 20665 20665 1 0 0 4160800 IEENVEELRR LKGRLTPYADQLQTKIEENVEELRRSLAPY QLQTKIEENVEELRRSLAPYAQDVQGKLNH K I E R R S 0 2 1 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1285.6626 CON__Q32PJ2 CON__Q32PJ2 212 221 yes yes 2;3 1.1021E-05 148.96 By MS/MS By MS/MS 5.89 0.737 3 4 2 4 5 168220000 36317000 0 131900000 + 5816 81 6056 24483;24484;24485;24486;24487;24488;24489;24490;24491 20666;20667;20668;20669;20670;20671 20670 6 37174000 0 19862000 IEESDQGPYAIILAPTR IPLLVWITTLPKIDRIEESDQGPYAIILAP ESDQGPYAIILAPTRELAQQIEEETIKFGK R I E T R E 2 1 0 1 0 1 2 1 0 3 1 0 0 0 2 1 1 0 1 0 0 0 17 0 1871.9629 Q9BUQ8 Q9BUQ8 462 478 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 3.9027E-09 167.98 By MS/MS By MS/MS 2 0 2 1 1 11751000 0 2182900 9568400 5817 1909 6057 24492;24493 20672;20673 20673 2 0 982980 2162300 IEEVPELPLVVEDK AASALPALVMSKGHRIEEVPELPLVVEDKV RIEEVPELPLVVEDKVEGYKKTKEAVLLLK R I E D K V 0 0 0 1 0 0 4 0 0 1 2 1 0 0 2 0 0 0 0 3 0 0 14 0 1607.8658 P36578 P36578 144 157 RPL4 60S ribosomal protein L4 yes yes 2 0.0036094 93.623 By matching By MS/MS 3.43 2.19 2 1 1 1 1 1 1 6 69251000 0 1788400 67463000 5818 762 6058 24494;24495;24496;24497;24498;24499;24500 20674;20675;20676;20677;20678;20679 20677 6 0 874160 12005000 IEEVPELPLVVEDKVEGYK AASALPALVMSKGHRIEEVPELPLVVEDKV PELPLVVEDKVEGYKKTKEAVLLLKKLKAW R I E Y K K 0 0 0 1 0 0 5 1 0 1 2 2 0 0 2 0 0 0 1 4 0 0 19 1 2184.1566 P36578 P36578 144 162 RPL4 60S ribosomal protein L4 yes yes 2;3 3.6947E-09 119.87 By MS/MS By MS/MS 4.29 0.7 1 3 3 3 4 93352000 0 17765000 75587000 5819 762 6059 24501;24502;24503;24504;24505;24506;24507 20680;20681;20682;20683;20684 20680 5 0 5033000 11294000 IEEVPELPLVVEDKVEGYKK AASALPALVMSKGHRIEEVPELPLVVEDKV ELPLVVEDKVEGYKKTKEAVLLLKKLKAWN R I E K K T 0 0 0 1 0 0 5 1 0 1 2 3 0 0 2 0 0 0 1 4 0 0 20 2 2312.2515 P36578 P36578 144 163 RPL4 60S ribosomal protein L4 yes yes 3;4 1.3967E-08 109.72 By MS/MS By MS/MS 3.67 1.15 2 2 2 3 2 7 75961000 0 21795000 54166000 5820 762 6060 24508;24509;24510;24511;24512;24513;24514;24515;24516 20685;20686;20687;20688;20689;20690 20690 5 0 6025100 8602200 IEGDETSTEAATR RADQFEYVMYGKVYRIEGDETSTEAATRLS YRIEGDETSTEAATRLSAYVSYGGLLMRLQ R I E T R L 2 1 0 1 0 0 3 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 13 0 1378.6212 P52434 P52434 99 111 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes yes 2 0.00022055 147.91 By MS/MS By MS/MS 8 0 2 1 1 5874100 0 579390 5294700 5821 907 6061 24517;24518 20691;20692 20692 2 0 263600 811730 IEGDMIVCAAYAHELPK RVTNRDIICQIAYARIEGDMIVCAAYAHEL GDMIVCAAYAHELPKYGVKVGLTNYAAAYC R I E P K Y 3 0 0 1 1 0 2 1 1 2 1 1 1 0 1 0 0 0 1 1 0 0 17 0 1915.9172 P46777 P46777 69 85 RPL5 60S ribosomal protein L5 yes yes 2;3 0.040471 50.897 By matching By MS/MS 6.25 0.433 3 1 1 3 34265000 0 1511400 32754000 5822 828 6062 24519;24520;24521;24522 20693;20694 20693 2 0 523190 4946000 IEGVYAR KRGLRNQREHTALLKIEGVYARDETEFYLG REHTALLKIEGVYARDETEFYLGKRCAYVY K I E A R D 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 806.42865 P18077 P18077 30 36 RPL35A 60S ribosomal protein L35a yes yes 2 0.0030002 143.18 By MS/MS 8.5 0.5 1 1 2 34339000 0 0 34339000 5823 593 6063 24523;24524 20695;20696 20696 2 0 0 8779200 IEGYEDQVLITEHGDLGNSR HAFAQYNMDQFTPVKIEGYEDQVLITEHGD DQVLITEHGDLGNSRFLDPRNKISFKFDHL K I E S R F 0 1 1 2 0 1 3 3 1 2 2 0 0 0 0 1 1 0 1 1 0 0 20 0 2244.0659 P52907 P52907 67 86 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 0.00578 49.188 By MS/MS By matching 6 0 2 1 1 14941000 0 4763200 10177000 5824 914 6064 24525;24526 20697 20697 1 0 1648900 1522700 IEHSFEVDEYVLPK LGPYKVVLLKEPGKRIEHSFEVDEYVLPKF RIEHSFEVDEYVLPKFEVQVKMPKKISFLE R I E P K F 0 0 0 1 0 0 3 0 1 1 1 1 0 1 1 1 0 0 1 2 0 0 14 0 1703.8407 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 217 230 yes yes 2;3 0.00043199 134.57 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 24222000 4254400 0 19968000 + 5825 30 6065 24527;24528;24529;24530;24531 20698;20699;20700;20701 20701 4 4654100 0 3141500 IEHSFWR DMQNRLNKVIKSVGKIEHSFWRSFHTERKT KVIKSVGKIEHSFWRSFHTERKTEPATGFI K I E W R S 0 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 7 0 973.477 Q16531 Q16531 1068 1074 DDB1 DNA damage-binding protein 1 yes yes 2 0.0089773 110.34 By MS/MS 2 0 1 1 0 0 0 0 5826 1387 6066 24532 20702 20702 1 0 0 0 IEIDPQFQVVR IQEVTINQNLLTPLKIEIDPQFQVVRTQET TPLKIEIDPQFQVVRTQETQEIRTLNNQFA K I E V R T 0 1 0 1 0 2 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 11 0 1342.7245 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 98 108 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.00028758 133.57 By MS/MS By MS/MS 5.55 3.34 2 1 1 1 1 1 1 1 2 7 4 63402000 45979000 0 17423000 + 5827 94 6067 24533;24534;24535;24536;24537;24538;24539;24540;24541;24542;24543 20703;20704;20705;20706;20707 20705 5 41212000 0 6995600 IEISELNR QVTVGRHGDSLKEIKIEISELNRVIQRLQG DSLKEIKIEISELNRVIQRLQGEIAHVKKQ K I E N R V 0 1 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 972.52401 P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908 CON__P35908 400 407 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 2 1.5944E-39 217.21 By MS/MS By MS/MS By MS/MS 5.45 2.91 3 3 3 3 3 3 2 3 3 3 10 8 11 23052000000 14107000000 1026600000 7918300000 + 5828 65;66;413 6068 24544;24545;24546;24547;24548;24549;24550;24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561;24562;24563;24564;24565;24566;24567;24568;24569;24570;24571;24572 20708;20709;20710;20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723;20724;20725;20726;20727;20728;20729;20730;20731;20732;20733;20734;20735;20736;20737;20738;20739;20740;20741;20742 20712 35 13046000000 767670000 2622600000 IEISELNRVIQR QVTVGRHGDSLKEIKIEISELNRVIQRLQG EIKIEISELNRVIQRLQGEIAHVKKQCKNV K I E Q R L 0 2 1 0 0 1 2 0 0 3 1 0 0 0 0 1 0 0 0 1 0 0 12 1 1468.8362 P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908 CON__P35908 400 411 KRT1;KRT2 Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal no no 2;3 0.00015191 123.63 By MS/MS 3 1.41 2 2 2 2 2 10 72897000 72897000 0 0 + 5829 65;66;413 6069 24573;24574;24575;24576;24577;24578;24579;24580;24581;24582 20743;20744;20745;20746 20744 4 68519000 0 0 IEITSLLPSR SVISSWLSTDPAKDRIEITSLLPSRSLSVN PAKDRIEITSLLPSRSLSVNTLDVLGPCLV R I E S R S 0 1 0 0 0 0 1 0 0 2 2 0 0 0 1 2 1 0 0 0 0 0 10 0 1127.655 Q8NFH3 Q8NFH3 340 349 NUP43 Nucleoporin Nup43 yes yes 2 2.5738E-05 108.98 By MS/MS 5 0 1 1 0 0 0 0 5830 1641 6070 24583 20747 20747 1 0 0 0 IEKLEEYITTSK KIKQKLREIEENQKRIEKLEEYITTSKQSL QKRIEKLEEYITTSKQSLEEQKKLEGELTE R I E S K Q 0 0 0 0 0 0 3 0 0 2 1 2 0 0 0 1 2 0 1 0 0 0 12 1 1452.7712 Q14683 Q14683 435 446 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 6.7869E-06 163.46 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 89328000 0 12747000 76582000 5831 1312 6071 24584;24585;24586;24587;24588;24589;24590 20748;20749;20750;20751;20752;20753 20752 6 0 5848300 16837000 IELFVGGELIDPADDRK RCILNRIKANVAHTKIELFVGGELIDPADD LFVGGELIDPADDRKLIGQLNLKDKSLITA K I E R K L 1 1 0 3 0 0 2 2 0 2 2 1 0 1 1 0 0 0 0 1 0 0 17 1 1885.9785 Q93008 Q93008 932 948 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 3 0.061257 28.956 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 2 1 42107000 19971000 10228000 11909000 5832 1737 6072 24591;24592;24593;24594 20754;20755 20754 2 23042000 4016700 2309700 IELHGKPIEVEHSVPK DESWALKAIEALSGKIELHGKPIEVEHSVP ELHGKPIEVEHSVPKRQRIRKLQIRNIPPH K I E P K R 0 0 0 0 0 0 3 1 2 2 1 2 0 0 2 1 0 0 0 2 0 0 16 1 1810.9941 O00425 O00425 61 76 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 3;4 0.00030903 93.495 By MS/MS By MS/MS 3.83 0.898 3 1 2 4 2 65674000 0 43116000 22557000 5833 121 6073 24595;24596;24597;24598;24599;24600 20756;20757;20758;20759;20760 20757 5 0 16046000 3816900 IELWEQEHSK LQKMLPKLEEELKARIELWEQEHSKAFMVN ELKARIELWEQEHSKAFMVNGQKFMEYVAE R I E S K A 0 0 0 0 0 1 3 0 1 1 1 1 0 0 0 1 0 1 0 0 0 0 10 0 1297.6303 O43663 O43663 410 419 PRC1 Protein regulator of cytokinesis 1 yes yes 3 0.0033878 83.869 By matching By MS/MS 3.33 0.471 2 1 1 2 15162000 905280 0 14257000 5834 206 6074 24601;24602;24603 20761 20761 1 1044500 0 2657100 IEPHTGLLLLSVQK TKKKVSYVQLKERCRIEPHTGLLLLSVQKR RIEPHTGLLLLSVQKRSMSFQGIRQPVTVT R I E Q K R 0 0 0 0 0 1 1 1 1 1 4 1 0 0 1 1 1 0 0 1 0 0 14 0 1546.9083 P15924 P15924 2192 2205 DSP Desmoplakin yes yes 2;3 7.6226E-05 124.51 By matching By MS/MS 1 0 3 1 2 19009000 887550 0 18121000 5835 572 6075 24604;24605;24606 20762;20763 20763 2 887550 0 3904500 IEPPGLFR FCIMDNHKERIANFKIEPPGLFRGRGNHPK ERIANFKIEPPGLFRGRGNHPKMGMLKRRI K I E F R G 0 1 0 0 0 0 1 1 0 1 1 0 0 1 2 0 0 0 0 0 0 0 8 0 927.5178 P11387;Q969P6 P11387 355 362 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.0002213 138.07 By matching By MS/MS By MS/MS 2.5 1.12 2 2 2 2 1 3 4 268450000 4234500 70934000 193280000 5836 523 6076 24607;24608;24609;24610;24611;24612;24613;24614 20764;20765;20766;20767;20768;20769;20770;20771;20772;20773 20772 10 4234500 30892000 40505000 IEQVDKEDEITEK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA RKIEQVDKEDEITEKKAKKAKIKVKVEEEE K I E E K K 0 0 0 2 0 1 4 0 0 2 0 2 0 0 0 0 1 0 0 1 0 0 13 1 1574.7675 Q9Y2X3 Q9Y2X3 445 457 NOP58 Nucleolar protein 58 yes yes 2 0.00062363 154.66 By MS/MS 3.5 0.5 1 1 2 9329400 0 0 9329400 5837 2254 6077 24615;24616 20774 20774 1 0 0 1660700 IEQVDKEDEITEKK PSGDSTLPTCSKKRKIEQVDKEDEITEKKA KIEQVDKEDEITEKKAKKAKIKVKVEEEEE K I E K K A 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3 Q9Y2X3 445 458 NOP58 Nucleolar protein 58 yes yes 3 0.026457 57.328 By MS/MS 4 0 1 1 54502000 0 0 54502000 5838 2254 6078 24617 20775 20775 1 0 0 8901900 IERPGEGSPMVDNPMR SLNDCRIIFVDEVFKIERPGEGSPMVDNPM ERPGEGSPMVDNPMRRKSGPSCKHCKDDVN K I E M R R 0 2 1 1 0 0 2 2 0 1 0 0 2 0 3 1 0 0 0 1 0 0 16 1 1783.8345 Q96T88 Q96T88 280 295 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 3 5.0435E-05 99.451 By MS/MS By MS/MS 3 1.22 2 1 1 1 3 44123000 0 3216900 40907000 5839 1841 6079 24618;24619;24620;24621 20776;20777;20778;20779 20778 4 0 1448600 7959800 IESDVQEPTEPEDDLDIMLGNK IFDIDEAEEGVKDLKIESDVQEPTEPEDDL PTEPEDDLDIMLGNKKKKKKNVKFPDEDEI K I E N K K 0 0 1 4 0 1 4 1 0 2 2 1 1 0 2 1 1 0 0 1 0 0 22 0 2486.137 P20042 P20042 103 124 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2;3 1.6893E-19 130.98 By MS/MS 4.67 0.471 1 2 3 24487000 0 0 24487000 5840 613 6080 24622;24623;24624 20780;20781 20780 2 0 0 3540500 IESEGLLSLTTQLVK ERFKALHSKLQALGKIESEGLLSLTTQLVK IESEGLLSLTTQLVKEKLSTCEAEDIATYE K I E V K E 0 0 0 0 0 1 2 1 0 1 4 1 0 0 0 2 2 0 0 1 0 0 15 0 1629.9189 Q92552 Q92552 347 361 MRPS27 28S ribosomal protein S27, mitochondrial yes yes 2 0.00029171 122.33 By MS/MS By MS/MS 5 0 2 1 1 9104300 0 4897000 4207400 5841 1707 6081 24625;24626 20782;20783 20782 2 0 1262300 586850 IESETPVDLASSMPSSR KAEKAAAEEPRGGLKIESETPVDLASSMPS SETPVDLASSMPSSRHKAATKGSRKPNIKK K I E S R H 1 1 0 1 0 0 2 0 0 1 1 0 1 0 2 5 1 0 0 1 0 0 17 0 1804.8513 Q9UHB7 Q9UHB7 584 600 AFF4 AF4/FMR2 family member 4 yes yes 2 1.0914E-05 111.12 By MS/MS 2.5 0.5 1 1 2 7265900 0 0 7265900 5842 2151 6082 24627;24628 20784 20784 1 0 0 1562900 IESLSSQLSNLQK TVNSAREELMESRMRIESLSSQLSNLQKES MRIESLSSQLSNLQKESRACLERIQELEDL R I E Q K E 0 0 1 0 0 2 1 0 0 1 3 1 0 0 0 4 0 0 0 0 0 0 13 0 1445.7726 P20700 P20700 300 312 LMNB1 Lamin-B1 yes yes 2;3 3.5083E-72 242.59 By matching By MS/MS By MS/MS 3.89 1.94 2 2 5 4 3 1 1 1 2 7 10 1563200000 8743500 604460000 950010000 5843 619 6083 24629;24630;24631;24632;24633;24634;24635;24636;24637;24638;24639;24640;24641;24642;24643;24644;24645;24646;24647 20785;20786;20787;20788;20789;20790;20791;20792;20793;20794;20795;20796;20797;20798;20799;20800 20788 16 7309300 254950000 177200000 IESSIQSLQDLSK SSYTANLAAFLTITRIESSIQSLQDLSKQT TRIESSIQSLQDLSKQTEIPYGTVLDSAVY R I E S K Q 0 0 0 1 0 2 1 0 0 2 2 1 0 0 0 4 0 0 0 0 0 0 13 0 1446.7566 O43424 O43424 661 673 GRID2 Glutamate receptor ionotropic, delta-2 yes yes 2 4.7353E-05 96.143 By MS/MS 3 0 1 1 0 0 0 0 5844 197 6084 24648 20801 20801 1 0 0 0 IESVLSSSGK PDLELPSWLTTGNYRIESVLSSSGKRLGCI TGNYRIESVLSSSGKRLGCIKIAASLKGI_ R I E G K R 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 4 0 0 0 1 0 0 10 0 1005.5342 P17900 P17900 170 179 GM2A Ganglioside GM2 activator;Ganglioside GM2 activator isoform short yes yes 2 0.00090154 112.11 By MS/MS 6.5 0.5 1 1 2 11220000 11220000 0 0 5845 589 6085 24649;24650 20802 20802 1 19917000 0 0 IETDLPQIR VAEAAIQIFRNTGHKIETDLPQIRSTLIPI RNTGHKIETDLPQIRSTLIPILHQKAKRGT K I E I R S 0 1 0 1 0 1 1 0 0 2 1 0 0 0 1 0 1 0 0 0 0 0 9 0 1083.5924 Q29RF7 Q29RF7 709 717 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.0019465 106.04 By matching By MS/MS 1.5 0.5 1 1 1 1 3973600 0 431020 3542600 5846 1405 6086 24651;24652 20803 20803 1 0 210680 800560 IETIEVMEDR TEEYNLRDYFEKYGKIETIEVMEDRQSGKK EKYGKIETIEVMEDRQSGKKRGFAFVTFDD K I E D R Q 0 1 0 1 0 0 3 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.5911 P51991 P51991 152 161 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 3.2543E-11 171.36 By MS/MS By MS/MS By MS/MS 4.91 1.44 1 1 6 2 1 2 3 6 533950000 58560000 68153000 407230000 5847 900 6087;6088 24653;24654;24655;24656;24657;24658;24659;24660;24661;24662;24663 20804;20805;20806;20807;20808;20809;20810;20811;20812;20813;20814 20813 421 11 46914000 19081000 58852000 IEVEKPFAIAK RDKPLKDVIIADCGKIEVEKPFAIAKE___ DCGKIEVEKPFAIAKE______________ K I E A K E 2 0 0 0 0 0 2 0 0 2 0 2 0 1 1 0 0 0 0 1 0 0 11 1 1243.7176 P23284 P23284 205 215 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 3 0.0023403 90.827 By MS/MS By MS/MS 8 1.22 2 1 1 1 3 250640000 0 33648000 216990000 5848 640 6089 24664;24665;24666;24667 20815;20816 20815 2 0 19321000 41615000 IEVIEIMTDR TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK EQYGKIEVIEIMTDRGSGKKRGFAFVTFDD K I E D R G 0 1 0 1 0 0 2 0 0 3 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1217.6326 P09651;Q32P51 P09651 131 140 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 4.5097E-62 226.47 By MS/MS By MS/MS By MS/MS 5.61 1.92 1 1 1 5 5 2 2 1 4 5 9 468420000 17630000 110070000 340720000 5849 490 6090;6091 24668;24669;24670;24671;24672;24673;24674;24675;24676;24677;24678;24679;24680;24681;24682;24683;24684;24685 20817;20818;20819;20820;20821;20822;20823;20824;20825;20826;20827;20828 20825 200 11 20640000 37333000 52178000 IEVLEEELR EMLKSLEDLKLKNTKIEVLEEELRLARDAN KLKNTKIEVLEEELRLARDANSENCNKNKF K I E L R L 0 1 0 0 0 0 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1128.6027 P15924 P15924 1034 1042 DSP Desmoplakin yes yes 2 0.00035022 138.54 By MS/MS By MS/MS By MS/MS 5.12 2.8 2 1 1 1 1 1 1 6 1 1 108540000 56794000 12229000 39512000 5850 572 6092 24686;24687;24688;24689;24690;24691;24692;24693 20829;20830;20831;20832;20833;20834 20830 6 48738000 5977200 8513500 IEVLQQHENEDIYK STIAEIIEECGGLEKIEVLQQHENEDIYKL KIEVLQQHENEDIYKLAFEIIDQYFSGDDI K I E Y K L 0 0 1 1 0 2 3 0 1 2 1 1 0 0 0 0 0 0 1 1 0 0 14 0 1756.8632 O00505 O00505 462 475 KPNA3 Importin subunit alpha-4 yes yes 2 0.00064312 116.71 By MS/MS 4 0 1 1 15286000 0 0 15286000 5851 126 6093 24694 20835 20835 1 0 0 2496800 IEVQDTSGGTTALRPSASTQALSSSVSSSK CYQEVSQCFGVLSSRIEVQDTSGGTTALRP SASTQALSSSVSSSKLFSSSTAPHETSFGE R I E S K L 3 1 0 1 0 2 1 2 0 1 2 1 0 0 1 9 4 0 0 2 0 0 30 1 2951.4684 Q16531 Q16531 740 769 DDB1 DNA damage-binding protein 1 yes yes 3 5.8249E-111 234.52 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 68133000 0 24868000 43264000 5852 1387 6094 24695;24696;24697;24698 20836;20837;20838 20836 3 0 11199000 9259400 IEWLESHQDADIEDFK SSEDKETMEKAVEEKIEWLESHQDADIEDF EWLESHQDADIEDFKAKKKELEEIVQPIIS K I E F K A 1 0 0 3 0 1 3 0 1 2 1 1 0 1 0 1 0 1 0 0 0 0 16 0 1973.9007 P11021 P11021 602 617 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.0014717 75.463 By MS/MS 3 0 1 1 8736500 0 0 8736500 5853 516 6095 24699 20839 20839 1 0 0 1694500 IFALLAGK HQLQADSFIQDERLRIFALLAGKPVWQLSE IQDERLRIFALLAGKPVWQLSEKKQINVCS R I F G K P 2 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 831.52182 P52948 P52948 1398 1405 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 0.049679 73.039 By MS/MS 2.5 0.5 1 1 2 2473400 0 0 2473400 5854 916 6096 24700;24701 20840 20840 1 0 0 536570 IFALLAGKPVWQLSEK HQLQADSFIQDERLRIFALLAGKPVWQLSE FALLAGKPVWQLSEKKQINVCSQLDWKRSL R I F E K K 2 0 0 0 0 1 1 1 0 1 3 2 0 1 1 1 0 1 0 1 0 0 16 1 1799.0345 P52948 P52948 1398 1413 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2;3 0.00026262 128.28 By MS/MS 2.4 1.02 1 2 1 1 5 15567000 0 0 15567000 5855 916 6097 24702;24703;24704;24705;24706 20841;20842 20842 2 0 0 3377400 IFANTESYLK VGKELYEKKDAEMDRIFANTESYLKRRQKT AEMDRIFANTESYLKRRQKTHVPMLQVWTA R I F L K R 1 0 1 0 0 0 1 0 0 1 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1184.6077 Q09161 Q09161 195 204 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.00060047 133.58 By matching By MS/MS By MS/MS 3 0.632 1 3 1 2 1 2 51424000 4664600 10827000 35932000 5856 1189 6098 24707;24708;24709;24710;24711 20843;20844 20844 2 5454000 4615800 6856000 IFAPNHVVAK LPTPKCHTPPLYRMRIFAPNHVVAKSRFWY LYRMRIFAPNHVVAKSRFWYFVSQLKKMKK R I F A K S 2 0 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 0 0 2 0 0 10 0 1094.6237 Q02543 Q02543 32 41 RPL18A 60S ribosomal protein L18a yes yes 2 0.00011575 145.34 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 232030000 0 28719000 203310000 5857 1147 6099 24712;24713;24714 20845;20846 20846 2 0 15986000 36076000 IFAQDGEGQR EFTVDPKDAGKAPLKIFAQDGEGQRIDIQM KAPLKIFAQDGEGQRIDIQMKNRMDGTYAC K I F Q R I 1 1 0 1 0 2 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 10 0 1119.5309 O75369 O75369 682 691 FLNB Filamin-B yes yes 2 0.062634 67.897 By MS/MS 1 0 1 1 0 0 0 0 5858 254 6100 24715 20847 20847 1 0 0 0 IFAQYLVPHNLETEER IYYQNSIDDKLLVEKIFAQYLVPHNLETEE FAQYLVPHNLETEERMKCLYYLYASLDPNA K I F E R M 1 1 1 0 0 1 3 0 1 1 2 0 0 1 1 0 1 0 1 1 0 0 16 0 1957.9898 Q29RF7 Q29RF7 468 483 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.00068973 84.559 By MS/MS 1.5 0.5 1 1 2 9710300 0 0 9710300 5859 1405 6101 24716;24717 20848 20848 1 0 0 2162600 IFAQYMVPHNLETTER IYYQNSIDDRLLVERIFAQYMVPHNLETTE FAQYMVPHNLETTERMKCLYYLYATLDLNA R I F E R M 1 1 1 0 0 1 2 0 1 1 1 0 1 1 1 0 2 0 1 1 0 0 16 0 1947.9513 Q9NTI5 Q9NTI5 458 473 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 8.2293E-06 156.14 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 77811000 0 5454800 72356000 5860 2053 6102 24718;24719;24720;24721;24722 20849;20850;20851;20852 20851 4 0 2456400 15919000 IFASIAPSIYGHEDIKR KMITSLSKDQQIGEKIFASIAPSIYGHEDI ASIAPSIYGHEDIKRGLALALFGGEPKNPG K I F K R G 2 1 0 1 0 0 1 1 1 4 0 1 0 1 1 2 0 0 1 0 0 0 17 1 1916.0156 P49736 P49736 477 493 MCM2 DNA replication licensing factor MCM2 yes yes 4 1.9874E-06 110.38 By MS/MS 2 0 1 1 6367000 0 0 6367000 5861 864 6103 24723 20853 20853 1 0 0 1438800 IFCCHGGLSPDLQSMEQIR DCFNCLPIAAIVDEKIFCCHGGLSPDLQSM HGGLSPDLQSMEQIRRIMRPTDVPDQGLLC K I F I R R 0 1 0 1 2 2 1 2 1 2 2 0 1 1 1 2 0 0 0 0 0 0 19 0 2247.0235 P62140;P62136;P36873 P62136 169 187 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 3 0.0071479 56.906 By MS/MS 6 0 1 1 3551400 0 0 3551400 5862 1006;1007;763 6104 24724 20854 20854 0 0 0 531330 IFDEILVNAADNK GINYREVTFVPGLYKIFDEILVNAADNKQR YKIFDEILVNAADNKQRDPKMSCIRVTIDP K I F N K Q 2 0 2 2 0 0 1 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 13 0 1460.7511 P11388;Q02880 P11388 84 96 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 2.6843E-17 191.52 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 140120000 0 3388100 136740000 5863 524;1150 6105 24725;24726;24727;24728 20855;20856;20857 20856 1 0 1525700 29598000 IFDIDEAEEGVK LNFFNQKKKKKKTKKIFDIDEAEEGVKDLK TKKIFDIDEAEEGVKDLKIESDVQEPTEPE K I F V K D 1 0 0 2 0 0 3 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 12 0 1363.6507 P20042 P20042 88 99 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 7.1088E-18 190.24 By MS/MS 5 0 1 1 58488000 0 0 58488000 5864 613 6106 24729 20858 20858 1 0 0 8158000 IFDSEEILAGYK VLMPNVGEIVGGSMRIFDSEEILAGYKREG SMRIFDSEEILAGYKREGIDPTPYYWYTDQ R I F Y K R 1 0 0 1 0 0 2 1 0 2 1 1 0 1 0 1 0 0 1 0 0 0 12 0 1383.6922 O43776 O43776 479 490 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.0011473 116.52 By MS/MS 3.5 0.5 1 1 2 39826000 0 0 39826000 5865 211 6107 24730;24731 20859 20859 1 0 0 7204000 IFDSEEILAGYKR VLMPNVGEIVGGSMRIFDSEEILAGYKREG MRIFDSEEILAGYKREGIDPTPYYWYTDQR R I F K R E 1 1 0 1 0 0 2 1 0 2 1 1 0 1 0 1 0 0 1 0 0 0 13 1 1539.7933 O43776 O43776 479 491 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 3 0.0012603 94.122 By MS/MS 3.5 0.5 1 1 2 7241100 0 7241100 0 5866 211 6108 24732;24733 20860 20860 1 0 2461700 0 IFEYETQR HGPVVGSTRRLYEKKIFEYETQRRRLSPPS RRLYEKKIFEYETQRRRLSPPSSSAASSYS K I F Q R R 0 1 0 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 8 0 1084.5189 P50402 P50402 38 45 EMD Emerin yes yes 2 0.00029531 132.29 By MS/MS 6 0 1 1 36735000 0 0 36735000 5867 878 6109 24734 20861 20861 1 0 0 5495900 IFGGFLMR SLEICHPQERNIFNRIFGGFLMRKAYELAW ERNIFNRIFGGFLMRKAYELAWATACSFGG R I F M R K 0 1 0 0 0 0 0 2 0 1 1 0 1 2 0 0 0 0 0 0 0 0 8 0 939.50004 Q9Y305 Q9Y305 310 317 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 1.3362E-37 209.44 By MS/MS By MS/MS By MS/MS 5 1.47 2 3 5 2 1 1 6 6 114080000 2533600 44810000 66732000 5868 2256 6110;6111 24735;24736;24737;24738;24739;24740;24741;24742;24743;24744;24745;24746;24747 20862;20863;20864;20865;20866;20867;20868;20869;20870;20871;20872 20868 730 11 2029700 12101000 9748900 IFGLLMGTLQK QDQNMDEKGKQRNRRIFGLLMGTLQKFKQE RNRRIFGLLMGTLQKFKQESTVATERQKRR R I F Q K F 0 0 0 0 0 1 0 2 0 1 3 1 1 1 0 0 1 0 0 0 0 0 11 0 1219.6999 Q9H307 Q9H307 145 155 PNN Pinin yes yes 2 3.4061E-19 189.7 By matching By MS/MS By MS/MS 2 0.535 1 5 1 1 2 4 91106000 932950 14083000 76090000 5869 1978 6112;6113 24748;24749;24750;24751;24752;24753;24754 20873;20874;20875;20876;20877;20878 20876 686 5 1124100 6341800 16744000 IFGVTTLDIVR TAEVFKKHGVYNPNKIFGVTTLDIVRANTF NPNKIFGVTTLDIVRANTFVAELKGLDPAR K I F V R A 0 1 0 1 0 0 0 1 0 2 1 0 0 1 0 0 2 0 0 2 0 0 11 0 1232.7129 P40926 P40926 166 176 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 0.0065913 97.857 By matching By MS/MS 6.33 0.471 2 1 1 2 12615000 0 1362100 11253000 5870 786 6114 24755;24756;24757 20879;20880 20879 2 0 471510 1728300 IFHESVYGQCK CHVLSRTSWKNCEVRIFHESVYGQCKAIFY CEVRIFHESVYGQCKAIFYINKEKRIFYLP R I F C K A 0 0 0 0 1 1 1 1 1 1 0 1 0 1 0 1 0 0 1 1 0 0 11 0 1366.634 CON__Q58D62 CON__Q58D62 109 119 yes yes 3 0.035545 53.569 By MS/MS 4 0 1 1 4677900 4677900 0 0 + 5871 89 6115 24758 20881 20881 1 3649600 0 0 IFHTVTTTDDPVIR RITTRSEKPLRSIKRIFHTVTTTDDPVIRK RIFHTVTTTDDPVIRKLAKTQGNVFATDAI R I F I R K 0 1 0 2 0 0 0 0 1 2 0 0 0 1 1 0 4 0 0 2 0 0 14 0 1613.8413 O15371 O15371 223 236 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 3 0.0051417 70.438 By MS/MS 4 0 1 1 12046000 0 12046000 0 5872 178 6116 24759 20882 20882 1 0 3997600 0 IFIGTFK QHIDYRMRCILQDGRIFIGTFKAFDKHMNL RCILQDGRIFIGTFKAFDKHMNLILCDCDE R I F F K A 0 0 0 0 0 0 0 1 0 2 0 1 0 2 0 0 1 0 0 0 0 0 7 0 824.47963 P14678;P63162 P14678 26 32 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 0.021396 100.07 By matching By MS/MS By MS/MS 6.86 2.8 1 1 1 2 3 2 4 3 6 5 379570000 7312900 138920000 233340000 5873 563 6117 24760;24761;24762;24763;24764;24765;24766;24767;24768;24769;24770;24771;24772;24773 20883;20884;20885;20886;20887;20888;20889;20890 20889 8 8949900 90310000 86960000 IFLAQKPAPLLESPFK VPNVKSGALSKYAKKIFLAQKPAPLLESPF FLAQKPAPLLESPFKDRDHFQLGTLSHTLN K I F F K D 2 0 0 0 0 1 1 0 0 1 3 2 0 2 3 1 0 0 0 0 0 0 16 1 1798.0393 O00203 O00203 597 612 AP3B1 AP-3 complex subunit beta-1 yes yes 3 0.0010245 82.529 By matching By MS/MS 2.33 0.471 2 1 1 2 21839000 0 682470 21157000 5874 111 6118 24774;24775;24776 20891;20892 20891 2 0 307330 4574100 IFLLGLADNEAAIVQAESEETKER EWRGRTVPVKIDKVRIFLLGLADNEAAIVQ EAAIVQAESEETKERLFESMLSECRDAIQV R I F E R L 4 1 1 1 0 1 5 1 0 2 3 1 0 1 0 1 1 0 0 1 0 0 24 1 2645.3548 Q9UHB9 Q9UHB9 312 335 SRP68 Signal recognition particle subunit SRP68 yes yes 3 1.9971E-05 74.579 By MS/MS 3 0 1 1 5897900 0 0 5897900 5875 2152 6119 24777 20893 20893 1 0 0 1143900 IFLLTNNNLLLADQK VVNKINRANGKSTSRIFLLTNNNLLLADQK IFLLTNNNLLLADQKSGQIKSEVPLVDVTK R I F Q K S 1 0 3 1 0 1 0 0 0 1 5 1 0 1 0 0 1 0 0 0 0 0 15 0 1728.9774 O43795 O43795 1007 1021 MYO1B Unconventional myosin-Ib yes yes 2 0.00047297 143.97 By MS/MS 2 0 1 1 5603000 0 5603000 0 5876 212 6120 24778 20894 20894 1 0 2523100 0 IFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMK EISYLKKLKVKKQDRIFPPETSASVAATPP VNSSASADKPLSNMKILTLGKLSRNKDEVK R I F M K I 9 0 2 1 0 0 1 0 0 1 1 2 1 1 7 8 3 0 0 2 0 0 39 1 3766.8724 P09874 P09874 356 394 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3;4;5 6.1922E-69 133.23 By MS/MS By MS/MS 2.24 0.941 4 7 4 2 6 11 312200000 0 44941000 267260000 5877 492 6121;6122 24779;24780;24781;24782;24783;24784;24785;24786;24787;24788;24789;24790;24791;24792;24793;24794;24795 20895;20896;20897;20898;20899;20900;20901;20902;20903;20904;20905;20906;20907;20908;20909;20910;20911;20912;20913;20914;20915;20916;20917 20906 205 23 0 19777000 58910000 IFQEQVEK PMSADRVVAFMDHIRIFQEQVEKLKALHVD AFMDHIRIFQEQVEKLKALHVDSAEYSCLK R I F E K L 0 0 0 0 0 2 2 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 0 1019.5288 P24468;P10589 P24468 294 301 NR2F2;NR2F1 COUP transcription factor 2;COUP transcription factor 1 yes no 2 0.01344 89.55 By MS/MS 5 0 1 1 12902000 0 0 12902000 5878 648 6123 24796 20918 20918 1 0 0 1799500 IFQFQNFTNTR SPWDPKENLPQDYARIFQFQNFTNTRKSIF DYARIFQFQNFTNTRKSIFKEVEEKEVEGA R I F T R K 0 1 2 0 0 2 0 0 0 1 0 0 0 3 0 0 2 0 0 0 0 0 11 0 1414.6993 Q2NL82 Q2NL82 527 537 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.00032645 132.01 By MS/MS By matching 2.5 0.5 1 1 1 1 13109000 0 7803700 5305300 5879 1406 6124 24797;24798 20919 20919 1 0 3514100 1029000 IFQGNVHNFEK VWDVRPFAPKERCVKIFQGNVHNFEKNLLR RCVKIFQGNVHNFEKNLLRCSWSPDGSKIA K I F E K N 0 0 2 0 0 1 1 1 1 1 0 1 0 2 0 0 0 0 0 1 0 0 11 0 1331.6622 Q96DI7 Q96DI7 276 286 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2;3 0.0055877 99.815 By MS/MS By MS/MS 5.5 0.866 1 3 3 1 2 6 207120000 0 25868000 181260000 5880 1767 6125 24799;24800;24801;24802;24803;24804;24805;24806 20920;20921;20922;20923;20924;20925;20926 20924 7 0 8426100 25989000 IFQGSFGGPTLYENPHYQSPNMHR ALVEIGPRFVLNLIKIFQGSFGGPTLYENP TLYENPHYQSPNMHRRVIRSITAAKYREKQ K I F H R R 0 1 2 0 0 2 1 3 2 1 1 0 1 2 3 2 1 0 2 0 0 0 24 0 2776.2816 Q8TDN6 Q8TDN6 243 266 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3;4 2.1386E-20 123.14 By MS/MS By MS/MS 5.33 0.816 1 5 2 1 5 4 180370000 0 85598000 94774000 5881 1663 6126;6127 24807;24808;24809;24810;24811;24812;24813;24814;24815 20927;20928;20929;20930;20931;20932;20933 20930 655 7 0 23169000 13710000 IFQWPSFK VSLIAMAILNPKRNRIFQWPSFKLQGGLSQ LNPKRNRIFQWPSFKLQGGLSQLSFPLSVE R I F F K L 0 0 0 0 0 1 0 0 0 1 0 1 0 2 1 1 0 1 0 0 0 0 8 0 1051.5491 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 177 184 yes yes 2 0.0015772 113.89 By MS/MS By MS/MS By MS/MS 5.7 2.53 1 1 1 1 3 3 3 5 2 33757000 5581700 13449000 14726000 + 5882 30 6128 24816;24817;24818;24819;24820;24821;24822;24823;24824;24825 20934;20935;20936;20937;20938;20939;20940;20941;20942;20943 20941 9 8105200 6436600 2481800 IFREDYSITTK WSQKKLDEMTDRDWRIFREDYSITTKGGKI RDWRIFREDYSITTKGGKIPNPIRSWKDSS R I F T K G 0 1 0 1 0 0 1 0 0 2 0 1 0 1 0 1 2 0 1 0 0 0 11 1 1371.7034 Q9BUQ8 Q9BUQ8 372 382 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3 0.021637 65.234 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 32953000 0 10081000 22872000 5883 1909 6129 24826;24827;24828;24829;24830 20944;20945 20944 2 0 4541400 5042900 IFSAEIIYHLFDAFTK IERDAQEMADSLGVRIFSAEIIYHLFDAFT FSAEIIYHLFDAFTKYRQDYKKQKQEEFKH R I F T K Y 2 0 0 1 0 0 1 0 1 3 1 1 0 3 0 1 1 0 1 0 0 0 16 0 1913.9927 O60841 O60841 1056 1071 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.011833 53.565 By MS/MS 2.5 1.12 1 1 1 1 4 24763000 0 0 24763000 5884 236 6130 24831;24832;24833;24834 20946 20946 1 0 0 5556600 IFSGVFVK SLLVQRTIARLRLKKIFSGVFVKVTPQNLK ARLRLKKIFSGVFVKVTPQNLKMLRIVEPY K I F V K V 0 0 0 0 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 2 0 0 8 0 895.51674 Q6DKI1 Q6DKI1 124 131 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2 0.0459 73.975 By matching By MS/MS 6.33 0.471 2 1 1 2 66002000 0 8189900 57812000 5885 1471 6131 24835;24836;24837 20947 20947 1 0 2835000 9315700 IFSIVEQR GRKVPCVGLSIGVERIFSIVEQRLEALEEK LSIGVERIFSIVEQRLEALEEKIRTTETQV R I F Q R L 0 1 0 0 0 1 1 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 8 0 990.54983 P12081 P12081 389 396 HARS Histidine--tRNA ligase, cytoplasmic yes yes 2 0.00020546 139.31 By MS/MS By MS/MS 4 0 2 1 1 15201000 0 7401600 7799400 5886 532 6132 24838;24839 20948;20949 20948 2 0 2456300 1273900 IFSLLSGEGNVTFNGHK DGLHLAVGYEDGSIRIFSLLSGEGNVTFNG SLLSGEGNVTFNGHKAAITTLKYDQLGGRL R I F H K A 0 0 2 0 0 0 1 3 1 1 2 1 0 2 0 2 1 0 0 1 0 0 17 0 1818.9264 Q9UNX4 Q9UNX4 91 107 WDR3 WD repeat-containing protein 3 yes yes 3 0.00025807 90.754 By MS/MS 2 0 1 1 5092900 0 5092900 0 5887 2212 6133 24840 20950 20950 1 0 2293400 0 IFSQRPFDKLEQLSSGNK ELLITDLLPDNRKLRIFSQRPFDKLEQLSS QRPFDKLEQLSSGNKDSRDRRLILWYFEHQ R I F N K D 0 1 1 1 0 2 1 1 0 1 2 2 0 2 1 3 0 0 0 0 0 0 18 2 2093.0906 Q03701 Q03701 306 323 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 4 0.043945 37.171 By MS/MS 2 0 1 1 1842100 0 1842100 0 5888 1157 6134 24841 20951 20951 1 0 829500 0 IFTIESTR WARKVQQRNLGVSGRIFTIESTRVRGRTGN NLGVSGRIFTIESTRVRGRTGNVLKLKVNF R I F T R V 0 1 0 0 0 0 1 0 0 2 0 0 0 1 0 1 2 0 0 0 0 0 8 0 965.5182 Q14204 Q14204 717 724 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.011278 92.187 By MS/MS 1 0 1 1 4809600 0 4809600 0 5889 1292 6135 24842 20952 20952 1 0 2350900 0 IFTPIVEHLGLQIR VPANRYTPLKENWMKIFTPIVEHLGLQIRF KIFTPIVEHLGLQIRFNLKSRNVEIRTCKE K I F I R F 0 1 0 0 0 1 1 1 1 3 2 0 0 1 1 0 1 0 0 1 0 0 14 0 1634.9508 Q9NRX1 Q9NRX1 95 108 PNO1 RNA-binding protein PNO1 yes yes 2;3 0.0014234 99.568 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 35918000 0 5185800 30733000 5890 2047 6136 24843;24844;24845;24846 20953;20954;20955 20954 3 0 1795100 4675900 IFTQLEEFR EDMEIAEGCFRHIKKIFTQLEEFRASELLR FRHIKKIFTQLEEFRASELLRSGLDRSKYL K I F F R A 0 1 0 0 0 1 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 9 0 1181.6081 O60306 O60306 1004 1012 AQR Intron-binding protein aquarius yes yes 2 4.6691E-07 154.71 By matching By MS/MS By MS/MS 1.5 0.5 2 2 1 2 1 17185000 3520200 5069600 8594700 5891 225 6137 24847;24848;24849;24850 20956;20957 20956 2 3520200 2335000 1942200 IFVFEPPPGVK EINPKVPVNLLRAGRIFVFEPPPGVKANML RAGRIFVFEPPPGVKANMLRTFSSIPVSRI R I F V K A 0 0 0 0 0 0 1 1 0 1 0 1 0 2 3 0 0 0 0 2 0 0 11 0 1228.6856 Q14204 Q14204 4144 4154 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.071236 68.735 By MS/MS 1 0 1 1 4128200 0 4128200 0 5892 1292 6138 24851 20958 20958 1 0 2017800 0 IFVGGIKEDTEEHHLRDYFEQYGK REDSQRPGAHLTVKKIFVGGIKEDTEEHHL TEEHHLRDYFEQYGKIEVIEIMTDRGSGKK K I F G K I 0 1 0 2 0 1 4 3 2 2 1 2 0 2 0 0 1 0 2 1 0 0 24 2 2909.3984 P09651;Q32P51 P09651 107 130 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 5 0.00014155 65.901 By MS/MS By matching 5.67 0.471 1 2 2 1 17175000 0 14219000 2955800 5893 490 6139 24852;24853;24854 20959 20959 1 0 4789000 442220 IFVGGIKEDTEEYNLR REDSVKPGAHLTVKKIFVGGIKEDTEEYNL FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K I F L R D 0 1 1 1 0 0 3 2 0 2 1 1 0 1 0 0 1 0 1 1 0 0 16 1 1881.9472 P51991 P51991 128 143 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 4.131E-173 300.71 By MS/MS By MS/MS 4.1 1.58 1 1 1 2 3 2 1 9 461830000 0 43474000 418360000 5894 900 6140 24855;24856;24857;24858;24859;24860;24861;24862;24863;24864 20960;20961;20962;20963;20964;20965;20966 20965 7 0 11206000 61393000 IFVGGIKEDTEEYNLRDYFEK REDSVKPGAHLTVKKIFVGGIKEDTEEYNL KEDTEEYNLRDYFEKYGKIETIEVMEDRQS K I F E K Y 0 1 1 2 0 0 4 2 0 2 1 2 0 2 0 0 1 0 2 1 0 0 21 2 2564.2435 P51991 P51991 128 148 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 4 5.3749E-08 103.4 By MS/MS 5.5 0.5 1 1 2 12638000 0 12638000 0 5895 900 6141 24865;24866 20967 20967 1 0 3693100 0 IFVGGLSPDTPEEK PKRAKAMKTKEPVKKIFVGGLSPDTPEEKI KIFVGGLSPDTPEEKIREYFGGFGEVESIE K I F E K I 0 0 0 1 0 0 2 2 0 1 1 1 0 1 2 1 1 0 0 1 0 0 14 0 1487.7508 Q14103 Q14103 184 197 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 2.9563E-07 168.22 By MS/MS By MS/MS By MS/MS 4.92 2.3 2 1 2 3 2 1 1 1 1 5 7 714410000 46332000 153830000 514250000 5896 1281 6142 24867;24868;24869;24870;24871;24872;24873;24874;24875;24876;24877;24878;24879 20968;20969;20970;20971;20972;20973;20974;20975;20976;20977;20978;20979;20980;20981 20976 14 37118000 46143000 80231000 IFVGNVSAACTSQELR LVVEMSRPRPLNTWKIFVGNVSAACTSQEL FVGNVSAACTSQELRSLFERRGRVIECDVV K I F L R S 2 1 1 0 1 1 1 1 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1750.8672 Q96PK6 Q96PK6 81 96 RBM14 RNA-binding protein 14 yes yes 2 4.8705E-47 225.1 By MS/MS 3 0 1 1 22299000 0 0 22299000 5897 1818 6143 24880 20982 20982 1 0 0 4324900 IFVNDDR ______________________________ ______________________________ R I F D R H 0 1 1 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 7 0 877.42938 Q12906 Q12906 6 12 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.021018 100.74 By MS/MS 2 0 1 1 14164000 0 14164000 0 5898 1211 6144 24881 20983 20983 1 0 6378400 0 IFVNDDRHVMAK ______________________________ PMRIFVNDDRHVMAKHSSVYPTQEELEAVQ R I F A K H 1 1 1 2 0 0 0 0 1 1 0 1 1 1 0 0 0 0 0 2 0 0 12 1 1443.7293 Q12906 Q12906 6 17 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 0.016252 67.749 By MS/MS 3.5 1.12 1 1 1 1 4 41199000 0 41199000 0 5899 1211 6145 24882;24883;24884;24885 20984 20984 1 0 17794000 0 IFVNSNTDVAPFLR EVKDLASVSLKNPVRIFVNSNTDVAPFLRQ RIFVNSNTDVAPFLRQEFIRIRPNREGDRE R I F L R Q 1 1 2 1 0 0 0 0 0 1 1 0 0 2 1 1 1 0 0 2 0 0 14 0 1591.8358 Q96GQ7 Q96GQ7 423 436 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 2.4794E-72 239.39 By MS/MS By MS/MS 2.2 0.748 1 2 2 1 4 105950000 0 46601000 59352000 5900 1793 6146 24886;24887;24888;24889;24890 20985;20986;20987 20985 3 0 20985000 12440000 IFYHPETTQLMILSASEATVK ENAHKDFKKAVGACRIFYHPETTQLMILSA TTQLMILSASEATVKRVNILSDMHLRSIRT R I F V K R 2 0 0 0 0 1 2 0 1 2 2 1 1 1 1 2 3 0 1 1 0 0 21 0 2378.2192 P51114 P51114 159 179 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 3 1.6517E-07 99.409 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 37523000 0 13266000 24257000 5901 887 6147 24891;24892;24893;24894 20988;20989;20990 20988 3 0 5210800 4555100 IFYPETTDIYDR VIQWLNAMDEIGLPKIFYPETTDIYDRKNM LPKIFYPETTDIYDRKNMPRCIYCIHALSL K I F D R K 0 1 0 2 0 0 1 0 0 2 0 0 0 1 1 0 2 0 2 0 0 0 12 0 1531.7195 P46940 P46940 131 142 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.00051582 125.48 By matching By MS/MS 1.33 0.471 2 1 1 2 9941200 0 1345200 8596000 5902 835 6148 24895;24896;24897 20991;20992 20991 2 0 657540 1893200 IFYQFLYNNNTR RKEKDTPNENRQKLRIFYQFLYNNNTRQQT KLRIFYQFLYNNNTRQQTEARDDLHCPWCT R I F T R Q 0 1 3 0 0 1 0 0 0 1 1 0 0 2 0 0 1 0 2 0 0 0 12 0 1591.7783 Q15022 Q15022 428 439 SUZ12 Polycomb protein SUZ12 yes yes 2 9.4941E-09 173.37 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 14349000 0 4238000 10111000 5903 1333 6149 24898;24899;24900 20993;20994 20994 2 0 1908400 2122700 IGAEVYHNLK MILPVGAANFREAMRIGAEVYHNLKNVIKE REAMRIGAEVYHNLKNVIKEKYGKDATNVG R I G L K N 1 0 1 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1142.6084 P06733 P06733 184 193 ENO1 Alpha-enolase yes yes 2 0.00062662 133.05 By MS/MS By MS/MS By MS/MS 6.62 1.94 2 2 3 3 1 2 6 3 4 82622000 41119000 13895000 27609000 5904 448 6150 24901;24902;24903;24904;24905;24906;24907;24908;24909;24910;24911;24912;24913 20995;20996;20997;20998;20999;21000;21001;21002;21003 21000 9 41143000 4571300 9920500 IGALEGYR TIKNDPSLPEPKCVKIGALEGYRGQRVKVF PEPKCVKIGALEGYRGQRVKVFGWVHRLRR K I G Y R G 1 1 0 0 0 0 1 2 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 877.46577 O43776 O43776 117 124 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.0018129 110.63 By MS/MS 4 0 1 1 26158000 0 26158000 0 5905 211 6151 24914 21004 21004 1 0 8680800 0 IGALLPYFVYVVSGVK QLMKVALQDLQTNSKIGALLPYFVYVVSGV GALLPYFVYVVSGVKSVSHDLEQLHRLLQV K I G V K S 1 0 0 0 0 0 0 2 0 1 2 1 0 1 1 1 0 0 2 4 0 0 16 0 1723.9913 Q9Y6J9 Q9Y6J9 189 204 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 3 0.049058 36.193 By MS/MS 3 0 1 1 1350200 0 0 1350200 5906 2312 6152 24915 21005 21005 1 0 0 261870 IGAMLAYTPLDEK SQVYGAPHLLRLFVRIGAMLAYTPLDEKSL VRIGAMLAYTPLDEKSLALLLNYLHDFLKY R I G E K S 2 0 0 1 0 0 1 1 0 1 2 1 1 0 1 0 1 0 1 0 0 0 13 0 1420.7272 Q9UBU8;Q15014 Q9UBU8 309 321 MORF4L1;MORF4L2 Mortality factor 4-like protein 1;Mortality factor 4-like protein 2 yes no 2 3.7798E-05 105.13 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 12052000 0 12052000 0 5907 2135 6153 24916;24917;24918;24919 21006;21007 21007 2 0 3886500 0 IGAPSADQTLTNMNR TYTGSGGKNLAGNKRIGAPSADQTLTNMNR IGAPSADQTLTNMNRALALNCDAPLDDKIG R I G N R A 2 1 2 1 0 1 0 1 0 1 1 0 1 0 1 1 2 0 0 0 0 0 15 0 1587.7675 Q96PU4 Q96PU4 521 535 UHRF2 E3 ubiquitin-protein ligase UHRF2 yes yes 2 0.00062345 104.07 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 7024900 0 1661600 5363400 5908 1819 6154 24920;24921 21008;21009 21009 2 0 748230 1040200 IGASLADVDPMQLDSSVR FRKDELKGIYKDRMKIGASLADVDPMQLDS SLADVDPMQLDSSVRFDSVGGLSNHIAALK K I G V R F 2 1 0 3 0 1 0 1 0 1 2 0 1 0 1 3 0 0 0 2 0 0 18 0 1872.9251 Q6PL18 Q6PL18 407 424 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 1.6632E-16 179.02 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 16910000 0 5869400 11041000 5909 1498 6155 24922;24923;24924 21010;21011 21011 2 0 2712500 2495100 IGDEDVGR KKGPKVTVKVYFDLRIGDEDVGRVIFGLFG KVYFDLRIGDEDVGRVIFGLFGKTVPKTVD R I G G R V 0 1 0 2 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 8 0 859.40356 P23284 P23284 52 59 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.00038082 130.77 By matching By MS/MS 8.2 1.17 2 1 1 1 1 4 185400000 0 9871700 175530000 5910 640 6156 24925;24926;24927;24928;24929 21012 21012 1 0 5668400 32766000 IGDFGLVTSLK LKPSNIFLVDTKQVKIGDFGLVTSLKNDGK KQVKIGDFGLVTSLKNDGKRTRSKGTLRYM K I G L K N 0 0 0 1 0 0 0 2 0 1 2 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 P19525 P19525 430 440 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00023635 135.63 By MS/MS By MS/MS 5 1.6 2 1 1 1 2 4 3 71359000 0 30547000 40812000 5911 609 6157 24930;24931;24932;24933;24934;24935;24936 21013;21014;21015;21016 21016 4 0 11829000 7623800 IGDILLR WEGPSKAHTKGSHQRIGDILLRNMRQLKEF HTKGSHQRIGDILLRNMRQLKEFTSYFQRH R I G L R N 0 1 0 1 0 0 0 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 798.49634 O94887 O94887 619 625 FARP2 FERM, RhoGEF and pleckstrin domain-containing protein 2 yes yes 2 0.0027018 137.44 By matching By MS/MS 10 0 2 1 1 26061000 407300 0 25654000 5912 302 6158 24937;24938 21017 21017 1 742020 0 56108000 IGDTSVSYK SEQDQPMGGWEMIRKIGDTSVSYKYTSRYV WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI K I G Y K Y 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 2 1 0 1 1 0 0 9 0 968.48148 P20700 P20700 475 483 LMNB1 Lamin-B1 yes yes 2 0.025722 78.516 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 137610000 8218000 29000000 100390000 5913 619 6159 24939;24940;24941;24942 21018;21019 21019 2 9481800 12363000 19384000 IGDVLVNQFSGENAER ESLVDKSEKNFLIKRIGDVLVNQFSGENAE GDVLVNQFSGENAERLKKTYGKFCGQHNQS R I G E R L 1 1 2 1 0 1 2 2 0 1 1 0 0 1 0 1 0 0 0 2 0 0 16 0 1746.8537 Q12802 Q12802 2077 2092 AKAP13 A-kinase anchor protein 13 yes yes 2 9.5032E-05 105.03 By MS/MS 1.5 0.5 1 1 2 5206900 0 0 5206900 5914 1201 6160 24943;24944 21020 21020 1 0 0 1156300 IGDYVQQHGGVSLVEQLLQDPK EMVGEKGLAPEVADRIGDYVQQHGGVSLVE HGGVSLVEQLLQDPKLSQNKQALEGLGDLK R I G P K L 0 0 0 2 0 4 1 3 1 1 3 1 0 0 1 1 0 0 1 3 0 0 22 0 2422.2492 P12081 P12081 267 288 HARS Histidine--tRNA ligase, cytoplasmic yes yes 3 0.0023869 52.654 By MS/MS 4 0 1 1 17298000 0 0 17298000 5915 532 6161 24945 21021 21021 1 0 0 2825200 IGEEEIQKPEEK RTDIFGVEETAIGKKIGEEEIQKPEEKVTW GKKIGEEEIQKPEEKVTWDGHSGSMARTQQ K I G E K V 0 0 0 0 0 1 5 1 0 2 0 2 0 0 1 0 0 0 0 0 0 0 12 1 1427.7144 Q15459 Q15459 488 499 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.031729 57.567 By MS/MS 2 0.816 1 1 1 3 12631000 0 0 12631000 5916 1369 6162 24946;24947;24948 21022 21022 1 0 0 2654300 IGEEQSPEDAEDGPPELLFIHGGHTAK SSGTDRRLNVWDLSKIGEEQSPEDAEDGPP GPPELLFIHGGHTAKISDFSWNPNEPWVIC K I G A K I 2 0 0 2 0 1 5 4 2 2 2 1 0 1 3 1 1 0 0 0 0 0 27 0 2872.3515 Q09028 Q09028 350 376 RBBP4 Histone-binding protein RBBP4 yes yes 3;4 4.6129E-32 127.17 By MS/MS 4.5 0.5 2 2 4 128050000 0 0 128050000 5917 1188 6163 24949;24950;24951;24952 21023;21024;21025;21026 21024 4 0 0 19545000 IGEGTYGVVYK ______________________________ KIEKIGEGTYGVVYKGRHKTTGQVVAMKKI K I G Y K G 0 0 0 0 0 0 1 3 0 1 0 1 0 0 0 0 1 0 2 2 0 0 11 0 1184.6077 P06493;Q00526;P24941 P06493 10 20 CDK1;CDK3;CDK2 Cyclin-dependent kinase 1;Cyclin-dependent kinase 3;Cyclin-dependent kinase 2 no no 2 0.02047 83.948 By matching By MS/MS By MS/MS 4.67 1.11 1 2 1 2 2 1 3 139600000 61595000 17990000 60020000 5918 443;654 6164 24953;24954;24955;24956;24957;24958 21027;21028 21028 2 68400000 6227400 8938600 IGELVGVLVNHFK LIVCLFSKQPTHESRIGELVGVLVNHFKSE SRIGELVGVLVNHFKSEKRHLQVNVTNPVQ R I G F K S 0 0 1 0 0 0 1 2 1 1 2 1 0 1 0 0 0 0 0 3 0 0 13 0 1423.8187 O94832 O94832 942 954 MYO1D Unconventional myosin-Id yes yes 2;3 0.00088394 100.93 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 25451000 0 1877300 23573000 5919 299 6165 24959;24960;24961;24962 21029;21030;21031 21030 2 0 845350 5310300 IGEVDVEQHTLAK LGRPLPLHFLRRASKIGEVDVEQHTLAKYL SKIGEVDVEQHTLAKYLMELTMLDYDMVHF K I G A K Y 1 0 0 1 0 1 2 1 1 1 1 1 0 0 0 0 1 0 0 2 0 0 13 0 1437.7464 P14635 P14635 312 324 CCNB1 G2/mitotic-specific cyclin-B1 yes yes 3 0.060423 40.093 By MS/MS 4 0 1 1 2926200 0 0 2926200 5920 561 6166 24963 21032 21032 1 0 0 477950 IGFDVVTLSGTR VDGFYTEEVRQGGRRIGFDVVTLSGTRGPL GRRIGFDVVTLSGTRGPLSRVGLEPPPGKR R I G T R G 0 1 0 1 0 0 0 2 0 1 1 0 0 1 0 1 2 0 0 2 0 0 12 0 1263.6823 Q9BSD7 Q9BSD7 48 59 NTPCR Cancer-related nucleoside-triphosphatase yes yes 2 0.0075209 98.254 By MS/MS 7 0 1 1 19967000 0 0 19967000 5921 1896 6167 24964 21033 21033 1 0 0 3543000 IGFFNQQYAEQLR LTPTHGEMRKNHRLKIGFFNQQYAEQLRME LKIGFFNQQYAEQLRMEETPTEYLQRGFNL K I G L R M 1 1 1 0 0 3 1 1 0 1 1 0 0 2 0 0 0 0 1 0 0 0 13 0 1612.7998 Q8NE71 Q8NE71 690 702 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 5.9696E-58 235.32 By MS/MS By MS/MS 4.11 2.23 1 2 2 2 2 4 5 167390000 0 33180000 134210000 5922 1638 6168 24965;24966;24967;24968;24969;24970;24971;24972;24973 21034;21035;21036;21037;21038;21039;21040 21038 6 0 15031000 27816000 IGFIEEVK ENKSVKMMTQKGLYRIGFIEEVKAQILEMR TQKGLYRIGFIEEVKAQILEMRYTKGKLSM R I G V K A 0 0 0 0 0 0 2 1 0 2 0 1 0 1 0 0 0 0 0 1 0 0 8 0 933.51713 Q96P63 Q96P63 232 239 SERPINB12 Serpin B12 yes yes 2 0.0047874 100.45 By MS/MS By MS/MS 6.17 3.02 1 1 1 1 1 1 1 1 2 2 10 2 91488000 84777000 0 6710400 5923 1816 6169 24974;24975;24976;24977;24978;24979;24980;24981;24982;24983;24984;24985 21041;21042;21043;21044;21045;21046 21044 6 87395000 0 8087100 IGFLGLGLMGSGIVSNLLK DSTAVNGSITPTDKKIGFLGLGLMGSGIVS GLGLMGSGIVSNLLKMGHTVTVWNRTAEKC K I G L K M 0 0 1 0 0 0 0 5 0 2 5 1 1 1 0 2 0 0 0 1 0 0 19 0 1888.0856 Q49A26 Q49A26 270 288 GLYR1 Putative oxidoreductase GLYR1 yes yes 2 0.0023868 72.265 By MS/MS 4 0 1 1 1105500 0 0 1105500 5924 1417 6170 24986 21047 21047 1 0 0 180570 IGFPWSEIR LGLNIYEQNDRLTPKIGFPWSEIRNISFND DRLTPKIGFPWSEIRNISFNDKKFVIKPID K I G I R N 0 1 0 0 0 0 1 1 0 2 0 0 0 1 1 1 0 1 0 0 0 0 9 0 1103.5764 P15311;P26038;P35241 P26038 238 246 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2 3.3437E-07 157.33 By MS/MS By MS/MS 3.7 1.79 1 2 2 2 1 1 1 3 7 85039000 0 24864000 60175000 5925 664;569;742 6171 24987;24988;24989;24990;24991;24992;24993;24994;24995;24996 21048;21049;21050;21051;21052;21053;21054;21055;21056;21057;21058 21054 11 0 10150000 11350000 IGFVGFPSVGK GPGEGFDVAKTGDARIGFVGFPSVGKSTLL GDARIGFVGFPSVGKSTLLSNLAGVYSEVA R I G G K S 0 0 0 0 0 0 0 3 0 1 0 1 0 2 1 1 0 0 0 2 0 0 11 0 1106.6124 Q9Y295 Q9Y295 67 77 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.019997 84.213 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 48949000 0 26993000 21956000 5926 2239 6172 24997;24998;24999 21059;21060 21060 2 0 7463900 3062400 IGGDAATTVNNSTPDFGFGGQK AFADAVQRARQIAAKIGGDAATTVNNSTPD TVNNSTPDFGFGGQKRQLEDGDQPESKKLA K I G Q K R 2 0 2 2 0 1 0 5 0 1 0 1 0 2 1 1 3 0 0 1 0 0 22 0 2153.0025 Q92945 Q92945 88 109 KHSRP Far upstream element-binding protein 2 yes yes 2;3 1.0363E-19 141 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 24780000 0 14411000 10369000 5927 1733 6173 25000;25001;25002;25003;25004 21061;21062;21063 21062 3 0 6370000 1850200 IGGDAATTVNNSTPDFGFGGQKR AFADAVQRARQIAAKIGGDAATTVNNSTPD VNNSTPDFGFGGQKRQLEDGDQPESKKLAS K I G K R Q 2 1 2 2 0 1 0 5 0 1 0 1 0 2 1 1 3 0 0 1 0 0 23 1 2309.1036 Q92945 Q92945 88 110 KHSRP Far upstream element-binding protein 2 yes yes 3 4.9955E-05 73.546 By MS/MS 2 0 1 1 9131500 0 9131500 0 5928 1733 6174 25005 21064 21064 1 0 4112000 0 IGGDAGTSLNSNDYGYGGQK AFKDALQRARQIAAKIGGDAGTSLNSNDYG GTSLNSNDYGYGGQKRPLEDGDQPDAKKVA K I G Q K R 1 0 2 2 0 1 0 6 0 1 1 1 0 0 0 2 1 0 2 0 0 0 20 0 1972.8763 Q96AE4 Q96AE4 45 64 FUBP1 Far upstream element-binding protein 1 yes yes 2 3.1749E-36 203.39 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 24383000 0 12481000 11902000 5929 1750 6175 25006;25007;25008 21065;21066 21066 2 0 4968500 2308400 IGGGDTTEHIQTHFESK LGRVQEFDSGLLHWRIGGGDTTEHIQTHFE GGDTTEHIQTHFESKTELLPSRPHAPCPPA R I G S K T 0 0 0 1 0 1 2 3 2 2 0 1 0 1 0 1 3 0 0 0 0 0 17 0 1855.8701 O14497 O14497 1846 1862 ARID1A AT-rich interactive domain-containing protein 1A yes yes 4 0.013673 48.053 By MS/MS 1.5 0.5 1 1 2 22902000 0 0 22902000 5930 134 6176 25009;25010 21067 21067 1 0 0 4992100 IGGGIDVPVPR RDQGGFGDRNEYGSRIGGGIDVPVPRHSVG YGSRIGGGIDVPVPRHSVGVVIGRSGEMIK R I G P R H 0 1 0 1 0 0 0 3 0 2 0 0 0 0 2 0 0 0 0 2 0 0 11 0 1078.6135 Q92945 Q92945 321 331 KHSRP Far upstream element-binding protein 2 yes yes 2 0.011575 88.921 By matching By MS/MS By MS/MS 3.71 2.37 1 1 2 2 1 1 4 2 90948000 30345000 35232000 25372000 5931 1733 6177 25011;25012;25013;25014;25015;25016;25017 21068;21069;21070;21071 21071 4 30345000 15547000 4834500 IGGGIGFGGLEAMNSMGGFGGVGR GGMGMDGPGFGGMNRIGGGIGFGGLEAMNS LEAMNSMGGFGGVGRMGELYRGAMTSSMER R I G G R M 1 1 1 0 0 0 1 11 0 2 1 0 2 2 0 1 0 0 0 1 0 0 24 0 2197.0408 Q9P2K5 Q9P2K5 377 400 MYEF2 Myelin expression factor 2 yes yes 2 1.8485E-20 141 By MS/MS 3.5 0.5 1 1 2 4729600 0 4729600 0 5932 2125 6178 25018;25019 21072;21073 21073 2 0 1638600 0 IGGIGTVPVGR PTDKPLRLPLQDVYKIGGIGTVPVGRVETG DVYKIGGIGTVPVGRVETGVLKPGMVVTFA K I G G R V 0 1 0 0 0 0 0 4 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1024.6029 Q5VTE0;P68104;Q05639 Q5VTE0 256 266 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 1.5133E-09 167.33 By MS/MS By MS/MS By MS/MS 5.05 2.52 2 2 2 3 3 3 3 2 1 5 8 8 1035900000 84871000 334100000 616920000 5933 1076;1165 6179 25020;25021;25022;25023;25024;25025;25026;25027;25028;25029;25030;25031;25032;25033;25034;25035;25036;25037;25038;25039;25040 21074;21075;21076;21077;21078;21079;21080;21081;21082;21083;21084;21085;21086;21087;21088;21089;21090;21091;21092;21093;21094;21095;21096;21097;21098 21083 25 88300000 133780000 98653000 IGGNEGIDVPIPR DQGGFREVRNEYGSRIGGNEGIDVPIPRFA SRIGGNEGIDVPIPRFAVGIVIGRNGEMIK R I G P R F 0 1 1 1 0 0 1 3 0 3 0 0 0 0 2 0 0 0 0 1 0 0 13 0 1335.7147 Q96AE4 Q96AE4 272 284 FUBP1 Far upstream element-binding protein 1 yes yes 2 0.0063122 96.756 By MS/MS 3 0 1 1 8384200 0 8384200 0 5934 1750 6180 25041 21099 21099 1 0 3574200 0 IGGVQQDTILAEGLHFR VFTVEGGHRAIFFNRIGGVQQDTILAEGLH GVQQDTILAEGLHFRIPWFQYPIIYDIRAR R I G F R I 1 1 0 1 0 2 1 3 1 2 2 0 0 1 0 0 1 0 0 1 0 0 17 0 1852.9795 Q99623 Q99623 55 71 PHB2 Prohibitin-2 yes yes 3 4.1041E-14 178.14 By matching By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 44522000 2502600 7656000 34363000 5935 1855 6181 25042;25043;25044;25045 21100;21101 21101 2 3332300 2650300 5191800 IGHPAPNFK ______________________________ SSGNAKIGHPAPNFKATAVMPDGQFKDISL K I G F K A 1 0 1 0 0 0 0 1 1 1 0 1 0 1 2 0 0 0 0 0 0 0 9 0 979.52395 Q06830 Q06830 8 16 PRDX1 Peroxiredoxin-1 yes yes 2 0.002101 105.39 By MS/MS By MS/MS 7 0 2 1 1 35755000 0 8124700 27630000 5936 1173 6182 25046;25047 21102;21103 21103 2 0 4665300 4902800 IGHVGMQIEHIIENIVAVTK TVLNISKSGSCSAIRIGHVGMQIEHIIENI MQIEHIIENIVAVTKGLSEKLPEKWESVKL R I G T K G 1 0 1 0 0 1 2 2 2 5 0 1 1 0 0 0 1 0 0 3 0 0 20 0 2200.2038 O76021 O76021 216 235 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2;3;4 5.6597E-14 152.68 By MS/MS 3.38 0.484 5 3 8 161730000 0 0 161730000 5937 295 6183;6184 25048;25049;25050;25051;25052;25053;25054;25055 21104;21105;21106;21107;21108;21109 21107 113 6 0 0 30509000 IGIVGLPNVGK IKPPPIIGRFGTSLKIGIVGLPNVGKSTFF TSLKIGIVGLPNVGKSTFFNVLTNSQASAE K I G G K S 0 0 1 0 0 0 0 3 0 2 1 1 0 0 1 0 0 0 0 2 0 0 11 0 1065.6546 Q9NTK5 Q9NTK5 25 35 OLA1 Obg-like ATPase 1 yes yes 2 0.0088894 93.374 By MS/MS By MS/MS 5 0 2 1 1 9406300 0 4338400 5067900 5938 2055 6185 25056;25057 21110;21111 21111 2 0 1118300 706890 IGKDEMLQMIR IVIQQGRLVDQNLNKIGKDEMLQMIRHGAT NLNKIGKDEMLQMIRHGATHVFASKESEIT K I G I R H 0 1 0 1 0 1 1 1 0 2 1 1 2 0 0 0 0 0 0 0 0 0 11 1 1332.6894 O60264 O60264 645 655 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 1.6597E-25 196.88 By MS/MS By MS/MS 1.67 0.471 2 4 2 4 120780000 0 21837000 98940000 5939 223 6186 25058;25059;25060;25061;25062;25063 21112;21113;21114;21115;21116;21117 21117 6 0 9833400 22096000 IGLADYALESGGASVISTR HHIVKQALQRYSEDRIGLADYALESGGASV DYALESGGASVISTRCSETYETKTALLSLF R I G T R C 3 1 0 1 0 0 1 3 0 2 2 0 0 0 0 3 1 0 1 1 0 0 19 0 1878.9687 Q9UH99 Q9UH99 544 562 SUN2 SUN domain-containing protein 2 yes yes 2 1.784E-12 167.89 By MS/MS By MS/MS 3 0 2 1 1 22773000 0 5080800 17692000 5940 2148 6187 25064;25065 21118;21119 21118 2 0 2166000 3431500 IGLDDEEKLDLFR DDHGDFIRMCTAMKKIGLDDEEKLDLFRVV KKIGLDDEEKLDLFRVVAGVLHLGNIDFEE K I G F R V 0 1 0 3 0 0 2 1 0 1 3 1 0 1 0 0 0 0 0 0 0 0 13 1 1561.7988 Q9UM54 Q9UM54 327 339 MYO6 Unconventional myosin-VI yes yes 3 0.0042141 79.466 By MS/MS 1.5 0.5 1 1 2 6084800 0 0 6084800 5941 2198 6188 25066;25067 21120 21120 1 0 0 1359700 IGLETSLR EDVEMSEDAYTVLTRIGLETSLRYAIQLIT AYTVLTRIGLETSLRYAIQLITAASLVCRK R I G L R Y 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 8 0 887.50763 Q9Y230 Q9Y230 393 400 RUVBL2 RuvB-like 2 yes yes 2 0.00012804 145.04 By matching By MS/MS By MS/MS 5.33 2.13 3 2 1 1 2 3 52132000 3142200 10967000 38023000 5942 2228 6189 25068;25069;25070;25071;25072;25073 21121;21122;21123;21124;21125 21121 5 2451500 3223700 5904300 IGLEVDR PERRAKSPTPDGSERIGLEVDRRASRSSQS PTPDGSERIGLEVDRRASRSSQSSKEEVNS R I G D R R 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 800.43922 Q96MU7 Q96MU7 155 161 YTHDC1 YTH domain-containing protein 1 yes yes 2 0.019865 102.8 By MS/MS 3 0 1 1 6791400 0 0 6791400 5943 1813 6190 25074 21126 21126 1 0 0 1317200 IGLFSHAEIK ERIEDRLPELEQLERIGLFSHAEIKAIIKK EQLERIGLFSHAEIKAIIKKASDLEYKIQR R I G I K A 1 0 0 0 0 0 1 1 1 2 1 1 0 1 0 1 0 0 0 0 0 0 10 0 1113.6182 Q9NYH9 Q9NYH9 22 31 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 2 0.026848 79.128 By MS/MS 3 0 1 1 6687300 0 0 6687300 5944 2098 6191 25075 21127 21127 1 0 0 1297000 IGLFYMDNDLITR VALGHRLDIVFYLLRIGLFYMDNDLITRNT LRIGLFYMDNDLITRNTEKAKSLIEEGGDW R I G T R N 0 1 1 2 0 0 0 1 0 2 2 0 1 1 0 0 1 0 1 0 0 0 13 0 1569.7861 Q15008 Q15008 147 159 PSMD6 26S proteasome non-ATPase regulatory subunit 6 yes yes 2 0.0571 60.434 By MS/MS 5 0 1 1 0 0 0 0 5945 1329 6192 25076 21128 21128 1 0 0 0 IGLGGRGGSGGSYGR LEGGQEDFESSGAGKIGLGGRGGSGGSYGR IGLGGRGGSGGSYGRGSRGGSGGSYGGGGS K I G G R G 0 2 0 0 0 0 0 8 0 1 1 0 0 0 0 2 0 0 1 0 0 0 15 1 1349.68 P35527;CON__P35527 P35527 473 487 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 0.00010654 144.1 By MS/MS By MS/MS 5.26 2.79 2 2 2 2 2 2 3 1 1 2 14 5 744110000 729060000 15046000 0 + 5946 750 6193 25077;25078;25079;25080;25081;25082;25083;25084;25085;25086;25087;25088;25089;25090;25091;25092;25093;25094;25095 21129;21130;21131;21132;21133;21134;21135;21136;21137;21138;21139;21140 21134 12 978830000 18526000 0 IGLGGRGGSGGSYGRGSR LEGGQEDFESSGAGKIGLGGRGGSGGSYGR GGRGGSGGSYGRGSRGGSGGSYGGGGSGGG K I G S R G 0 3 0 0 0 0 0 9 0 1 1 0 0 0 0 3 0 0 1 0 0 0 18 2 1649.8346 P35527;CON__P35527 P35527 473 490 KRT9 Keratin, type I cytoskeletal 9 yes no 4 0.010511 52.52 By MS/MS 8.67 1.25 1 1 1 3 18814000 18814000 0 0 + 5947 750 6194 25096;25097;25098 21141;21142;21143 21143 3 30665000 0 0 IGLINDMVR RRLATLLGLQAPPTRIGLINDMVRFNVLQY QAPPTRIGLINDMVRFNVLQYVVPEVKDLY R I G V R F 0 1 1 1 0 0 0 1 0 2 1 0 1 0 0 0 0 0 0 1 0 0 9 0 1029.5641 Q14152 Q14152 368 376 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0054315 101.33 By MS/MS By matching 1.67 0.471 1 2 2 1 5756300 0 1926000 3830200 5948 1286 6195 25099;25100;25101 21144;21145 21145 2 0 941420 865550 IGLVEDLNK KKMEMKGEPKDKVEKIGLVEDLNKGAKPVV KDKVEKIGLVEDLNKGAKPVVVLQKLSLDD K I G N K G 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 9 0 999.56006 Q6KC79 Q6KC79 989 997 NIPBL Nipped-B-like protein yes yes 2 0.002905 102 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 29324000 669030 8377800 20277000 5949 1480 6196 25102;25103;25104;25105 21146;21147 21147 2 669030 4095000 4405400 IGLVRPGTALELLEAQAATGFIVDPVSNLR NETTKQKLGIYEAMKIGLVRPGTALELLEA QAATGFIVDPVSNLRLPVEEAYKRGLVGIE K I G L R L 4 2 1 1 0 1 2 3 0 2 5 0 0 1 2 1 2 0 0 3 0 0 30 1 3119.7343 P15924 P15924 2280 2309 DSP Desmoplakin yes yes 3;4 1.2416E-40 124.12 By MS/MS 2.5 1.12 2 2 2 2 8 34773000 0 0 34773000 5950 572 6197 25106;25107;25108;25109;25110;25111;25112;25113 21148;21149;21150;21151 21149 4 0 0 7171900 IGNLQTDLSDGLR FTRWCNEHLKCVNKRIGNLQTDLSDGLRLI KRIGNLQTDLSDGLRLIALLEVLSQKRMYR R I G L R L 0 1 1 2 0 1 0 2 0 1 3 0 0 0 0 1 1 0 0 0 0 0 13 0 1400.726 O75369 O75369 37 49 FLNB Filamin-B yes yes 2 0.00032816 143.4 By MS/MS By MS/MS 1 0 2 1 1 8708100 0 4053700 4654300 5951 254 6198 25114;25115 21152;21153 21153 2 0 1981400 1002800 IGPILDNSTLQSEVKPILEK PVANVRFNVAKSLQKIGPILDNSTLQSEVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE K I G E K L 0 0 1 1 0 1 2 1 0 3 3 2 0 0 2 2 1 0 0 1 0 0 20 1 2193.2256 P30153 P30153 547 566 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 3 1.3686E-07 101.49 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 1 5 68033000 0 22512000 45522000 5952 712 6199 25116;25117;25118;25119;25120;25121 21154;21155 21154 2 0 7470800 7893000 IGPITPLEFYR TFTWEYRDKDKNYQKIGPITPLEFYREHVK NYQKIGPITPLEFYREHVKPLFNMEDKICL K I G Y R E 0 1 0 0 0 0 1 1 0 2 1 0 0 1 2 0 1 0 1 0 0 0 11 0 1304.7129 Q13867 Q13867 245 255 BLMH Bleomycin hydrolase yes yes 2 0.00027051 134.26 By MS/MS By matching By MS/MS 4.56 2.06 1 1 1 1 1 2 2 5 2 2 46561000 28038000 2844900 15678000 5953 1272 6200 25122;25123;25124;25125;25126;25127;25128;25129;25130 21156;21157;21158;21159;21160;21161;21162 21161 7 29068000 1135200 2556600 IGPLGLSPK CTGGEVGATSALAPKIGPLGLSPKKVGDDI SALAPKIGPLGLSPKKVGDDIAKATGDWKG K I G P K K 0 0 0 0 0 0 0 2 0 1 2 1 0 0 2 1 0 0 0 0 0 0 9 0 880.5382 P30050 P30050 32 40 RPL12 60S ribosomal protein L12 yes yes 2 0.00054901 132.08 By MS/MS By MS/MS By MS/MS 8 1.33 1 3 2 1 2 2 5 2 641680000 17274000 492660000 131750000 5954 708 6201 25131;25132;25133;25134;25135;25136;25137;25138;25139 21163;21164;21165;21166;21167;21168;21169;21170 21164 6 24791000 296820000 48323000 IGPYQPNVPVGIDYVIPK SDENKDDYTIPDEYRIGPYQPNVPVGIDYV YQPNVPVGIDYVIPKTGFYCKLCSLFYTNE R I G P K T 0 0 1 1 0 1 0 2 0 3 0 1 0 0 4 0 0 0 2 3 0 0 18 0 1968.072 P43243 P43243 781 798 MATR3 Matrin-3 yes yes 2;3 1.4554E-08 129.29 By MS/MS By MS/MS By MS/MS 3.67 2.15 2 4 3 1 1 2 1 1 1 9 5 539750000 8309600 245740000 285700000 5955 812 6202 25140;25141;25142;25143;25144;25145;25146;25147;25148;25149;25150;25151;25152;25153;25154 21171;21172;21173;21174;21175;21176;21177;21178;21179;21180;21181;21182;21183;21184;21185;21186;21187 21174 17 10012000 105130000 61956000 IGQGYLIK KGYHHRTEINKKIYKIGQGYLIKDGKLIKN INKKIYKIGQGYLIKDGKLIKNNASTDYDL K I G I K D 0 0 0 0 0 1 0 2 0 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 890.52255 P39023 P39023 287 294 RPL3 60S ribosomal protein L3 yes yes 2 0.00024955 135.87 By MS/MS By MS/MS 3.67 1.6 1 2 1 1 1 5 1 147950000 0 137270000 10685000 5956 778 6203 25155;25156;25157;25158;25159;25160 21188;21189;21190;21191;21192 21190 5 0 40762000 2072400 IGQLEEQLEQEAK VKSKFKATISALEAKIGQLEEQLEQEAKER AKIGQLEEQLEQEAKERAAANKLVRRTEKK K I G A K E 1 0 0 0 0 3 4 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1513.7624 P35580 P35580 1823 1835 MYH10 Myosin-10 yes yes 2 1.7386E-24 196.88 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 85591000 0 18549000 67043000 5957 753 6204 25161;25162;25163 21193;21194 21193 2 0 9066300 14555000 IGQPTVSYFLK PTKILVKPDRTFEIKIGQPTVSYFLKAAAG FEIKIGQPTVSYFLKAAAGIEKGARQTGKE K I G L K A 0 0 0 0 0 1 0 1 0 1 1 1 0 1 1 1 1 0 1 1 0 0 11 0 1251.6863 Q9Y3B7 Q9Y3B7 82 92 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 2 0.0073735 96.331 By MS/MS By MS/MS 7 0 2 1 1 41628000 0 12829000 28799000 5958 2266 6205 25164;25165 21195;21196 21195 2 0 7366300 5110200 IGQQPQQPGAPPQQDYTK GQSDYTKAWEEYYKKIGQQPQQPGAPPQQD QPQQPGAPPQQDYTKAWEEYYKKQAQVATG K I G T K A 1 0 0 1 0 6 0 2 0 1 0 1 0 0 4 0 1 0 1 0 0 0 18 0 1979.9701 Q92945 Q92945 629 646 KHSRP Far upstream element-binding protein 2 yes yes 2 1.3451E-08 148.62 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 18487000 0 9887200 8600000 5959 1733 6206 25166;25167;25168 21197;21198;21199 21197 3 0 4344800 1668000 IGQTIGYQIR AIAVAERVAAERRERIGQTIGYQIRLESRV ERRERIGQTIGYQIRLESRVSPKTLLTFCT R I G I R L 0 1 0 0 0 2 0 2 0 3 0 0 0 0 0 0 1 0 1 0 0 0 10 0 1147.635 Q9H6S0 Q9H6S0 268 277 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 2 1.1927E-05 112.84 By MS/MS 2 0 1 1 0 0 0 0 5960 1989 6207 25169 21200 21200 1 0 0 0 IGQTKPVVVYR WNPQSDLQAQDRCHRIGQTKPVVVYRLVTA RCHRIGQTKPVVVYRLVTANTIDQKIVERA R I G Y R L 0 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 1 0 1 3 0 0 11 1 1258.7398 Q9NRZ9 Q9NRZ9 711 721 HELLS Lymphoid-specific helicase yes yes 3 0.058846 48.004 By MS/MS 2 0 1 1 2993500 0 2993500 0 5961 2050 6208 25170 21201 21201 1 0 1348000 0 IGSLIDVNQSK EIVIGDEHISFTTSKIGSLIDVNQSKDPEG TTSKIGSLIDVNQSKDPEGLRVFYYLVQDL K I G S K D 0 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 11 0 1172.6401 P61326;Q96A72 Q96A72 106 116 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2 1.579E-26 199.46 By MS/MS By MS/MS By MS/MS 8.6 0.8 3 1 1 1 1 3 159480000 7891900 46046000 105540000 5962 992;1748 6209 25171;25172;25173;25174;25175 21202;21203;21204;21205 21203 3 6775500 20949000 25602000 IGSLIDVNQSKDPEGLR EIVIGDEHISFTTSKIGSLIDVNQSKDPEG SLIDVNQSKDPEGLRVFYYLVQDLKCLVFS K I G L R V 0 1 1 2 0 1 1 2 0 2 2 1 0 0 1 2 0 0 0 1 0 0 17 1 1839.969 P61326;Q96A72 Q96A72 106 122 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3 0.0029789 66.022 By MS/MS 8 0 1 1 7397400 0 0 7397400 5963 992;1748 6210 25176 21206 21206 1 0 0 1134100 IGSNMESLLQK NGMYCSLYEVVEKTRIGSNMESLLQKLDRE EKTRIGSNMESLLQKLDREKLVLVKPLGDR R I G Q K L 0 0 1 0 0 1 1 1 0 1 2 1 1 0 0 2 0 0 0 0 0 0 11 0 1218.6278 Q9UK61 Q9UK61 440 450 FAM208A Protein FAM208A yes yes 2 0.0023959 107.95 By matching By MS/MS 1 0 2 1 1 9542700 1061200 0 8481400 5964 2175 6211 25177;25178 21207 21207 1 1061200 0 1827500 IGTVSIFHMSDSYSETPLEDFVPQK VTPNEGLTVSFPFGKIGTVSIFHMSDSYSE DSYSETPLEDFVPQKVVRCYILSTADNVLT K I G Q K V 0 0 0 2 0 1 2 1 1 2 1 1 1 2 2 4 2 0 1 2 0 0 25 0 2826.3422 Q14690 Q14690 1255 1279 PDCD11 Protein RRP5 homolog yes yes 3 3.8641E-16 100.19 By MS/MS 1 0 1 1 8745500 0 0 8745500 5965 1314 6212 25179 21208 21208 1 0 0 1884400 IGVDLIMK FTPLTVKYAYYDTERIGVDLIMKTCFSPNR AYYDTERIGVDLIMKTCFSPNRVIGLSSDL R I G M K T 0 0 0 1 0 0 0 1 0 2 1 1 1 0 0 0 0 0 0 1 0 0 8 0 887.51502 O00303 O00303 247 254 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.032544 77.282 By MS/MS 5 0 1 1 4439700 0 4439700 0 5966 118 6213 25180 21209 21209 1 0 1144400 0 IGVGAPVYMAAVLEYLTAEILELAGNAAR GRMLRYIKKGHPKYRIGVGAPVYMAAVLEY YLTAEILELAGNAARDNKKGRVTPRHILLA R I G A R D 7 1 1 0 0 0 3 3 0 2 4 0 1 0 1 0 1 0 2 3 0 0 29 0 2974.5838 O75367 O75367 41 69 H2AFY Core histone macro-H2A.1 yes yes 3;4 2.1547E-15 94.019 By MS/MS 5 0 2 2 5753000 0 0 5753000 5967 253 6214 25181;25182 21210;21211 21210 2 0 0 802440 IGVLDEGK RRLFEGNALLRRLVRIGVLDEGKMKLDYIL LLRRLVRIGVLDEGKMKLDYILGLKIEDFL R I G G K M 0 0 0 1 0 0 1 2 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 829.45453 P46781 P46781 84 91 RPS9 40S ribosomal protein S9 yes yes 2 0.0026928 107.59 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 276380000 0 48532000 227850000 5968 831 6215 25183;25184;25185;25186 21212;21213;21214 21212 3 0 27867000 39980000 IGVMSLIR GVPREGLSRQHVLTRIGVMSLIRKKVQEFE RQHVLTRIGVMSLIRKKVQEFEHVNGRWSM R I G I R K 0 1 0 0 0 0 0 1 0 2 1 0 1 0 0 1 0 0 0 1 0 0 8 0 887.52626 Q14839 Q14839 1496 1503 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00020546 139.31 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 2 2 1 25079000 4869000 14431000 5779600 5969 1321 6216 25187;25188;25189;25190;25191 21215;21216 21215 2 5109300 6948000 1121000 IGVPSATEIIK QLVQVEQKAGIKFKRIGVPSATEIIKASSK KFKRIGVPSATEIIKASSKDAIRLLDSVPP R I G I K A 1 0 0 0 0 0 1 1 0 3 0 1 0 0 1 1 1 0 0 1 0 0 11 0 1126.6598 Q9NR30 Q9NR30 563 573 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.025272 81.263 By matching By MS/MS 1.5 0.5 1 1 1 1 40424000 2401600 38022000 0 5970 2038 6217 25192;25193 21217 21217 1 2401600 17122000 0 IGYNPDTVAFVPISGWNGDNMLEPSANMPWFK RYEEIVKEVSTYIKKIGYNPDTVAFVPISG GDNMLEPSANMPWFKGWKVTRKDGNASGTT K I G F K G 2 0 4 2 0 0 1 3 0 2 1 1 2 2 4 2 1 2 1 2 0 0 32 0 3566.6639 Q5VTE0;P68104 Q5VTE0 181 212 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 3 4.9712E-06 47.537 By MS/MS 2.5 1.5 1 1 2 9197400 0 0 9197400 5971 1076 6218 25194;25195 21218;21219 21219 2 0 0 1776000 IHEGCEEPATHNALAK KRNRLKLLLPWLEARIHEGCEEPATHNALA HEGCEEPATHNALAKIYIDSNNNPERFLRE R I H A K I 3 0 1 0 1 0 3 1 2 1 1 1 0 0 1 0 1 0 0 0 0 0 16 0 1775.8261 Q00610 Q00610 866 881 CLTC Clathrin heavy chain 1 yes yes 3;4 0.0010451 78.932 By MS/MS 1.33 0.471 2 1 3 11907000 0 0 11907000 5972 1125 6219 25196;25197;25198 21220;21221 21220 2 0 0 2568700 IHETIESINQLK ASTTNQQEIASLDVKIHETIESINQLKTQR DVKIHETIESINQLKTQRDFMLSFSTDPQD K I H L K T 0 0 1 0 0 1 2 0 1 3 1 1 0 0 0 1 1 0 0 0 0 0 12 0 1423.7671 Q92925;Q6STE5 Q92925 440 451 SMARCD2;SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2;SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 yes no 2;3 4.5859E-58 228.2 By MS/MS 4.83 1.34 1 2 1 1 1 6 38699000 0 0 38699000 5973 1732 6220 25199;25200;25201;25202;25203;25204 21222;21223 21222 2 0 0 6369100 IHFFLSK TIAQGKGQKLCEIERIHFFLSKKKTDELRN QKLCEIERIHFFLSKKKTDELRNLHKLLYN R I H S K K 0 0 0 0 0 0 0 0 1 1 1 1 0 2 0 1 0 0 0 0 0 0 7 0 890.50142 P35659 P35659 94 100 DEK Protein DEK yes yes 2 0.011159 118.69 By MS/MS By MS/MS 4 1.63 1 1 1 2 2 2 3 6 236620000 0 40000000 196620000 5974 758 6221 25205;25206;25207;25208;25209;25210;25211;25212;25213 21224;21225;21226;21227;21228;21229 21229 6 0 11710000 31498000 IHFGQITSNQMLVPVIEK SDVELICRCLFFLLRIHFGQITSNQMLVPV GQITSNQMLVPVIEKLRETTISKVSQVRDV R I H E K L 0 0 1 0 0 2 1 1 1 3 1 1 1 1 1 1 1 0 0 2 0 0 18 0 2053.103 Q9UNX4 Q9UNX4 862 879 WDR3 WD repeat-containing protein 3 yes yes 3 0.00023557 85.176 By MS/MS By MS/MS 2 0.816 1 1 1 2 1 14191000 0 7556100 6635100 5975 2212 6222 25214;25215;25216 21230;21231 21230 2 0 3375100 1429600 IHFPLATYAPVISAEK VDLTEFQTNLVPYPRIHFPLATYAPVISAE HFPLATYAPVISAEKAYHEQLSVAEITNAC R I H E K A 3 0 0 0 0 0 1 0 1 2 1 1 0 1 2 1 1 0 1 1 0 0 16 0 1755.956 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 265 280 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3 6.2076E-09 172.74 By MS/MS By MS/MS By MS/MS 4.5 2.12 3 3 4 7 5 5 2 1 2 5 11 16 3484400000 29603000 853510000 2601200000 5976 1077;1515;1883;1078 6223 25217;25218;25219;25220;25221;25222;25223;25224;25225;25226;25227;25228;25229;25230;25231;25232;25233;25234;25235;25236;25237;25238;25239;25240;25241;25242;25243;25244;25245;25246;25247;25248 21232;21233;21234;21235;21236;21237;21238;21239;21240;21241;21242;21243;21244;21245;21246;21247;21248;21249;21250;21251;21252;21253;21254;21255;21256;21257;21258;21259;21260;21261;21262;21263;21264;21265;21266;21267;21268;21269;21270;21271;21272;21273;21274;21275;21276;21277;21278;21279;21280;21281;21282;21283;21284;21285;21286;21287;21288;21289;21290;21291;21292;21293;21294;21295;21296;21297;21298;21299;21300;21301;21302;21303;21304;21305;21306;21307;21308;21309;21310;21311;21312;21313;21314;21315;21316;21317;21318;21319;21320;21321 21296 90 24425000 252820000 399920000 IHGTEEGQQILK LQLQDCSIFIKIIDRIHGTEEGQQILKQPV IDRIHGTEEGQQILKQPVSERLDFVCSFLQ R I H L K Q 0 0 0 0 0 2 2 2 1 2 1 1 0 0 0 0 1 0 0 0 0 0 12 0 1351.7096 Q14980 Q14980 43 54 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 2.7636E-12 181.53 By MS/MS By MS/MS By MS/MS 1.33 0.745 5 1 1 2 3 140970000 2709200 26648000 111610000 5977 1327 6224 25249;25250;25251;25252;25253;25254 21322;21323;21324;21325;21326 21324 5 2709200 13025000 24005000 IHHHSVPVFIPLEEIAAK LDSYFVDLVIQKPLRIHHHSVPVFIPLEEI HSVPVFIPLEEIAAKYLQTNIQHFLFSLCE R I H A K Y 2 0 0 0 0 0 2 0 3 3 1 1 0 1 2 1 0 0 0 2 0 0 18 0 2036.1207 Q9BU64 Q9BU64 150 167 CENPO Centromere protein O yes yes 4 0.012899 45.813 By MS/MS 6 0 1 1 4594200 0 0 4594200 5978 1903 6225 25255 21327 21327 1 0 0 687340 IHISQEDNVANK IFSPANRRRGRPPKRIHISQEDNVANKQTL PKRIHISQEDNVANKQTLASYRSKATKERD R I H N K Q 1 0 2 1 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 12 0 1366.6841 Q9NRL2 Q9NRL2 283 294 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2;3 0.00029914 129.89 By MS/MS 1.75 0.829 2 1 1 4 14661000 0 0 14661000 5979 2045 6226 25256;25257;25258;25259 21328;21329 21329 2 0 0 3121800 IHMVYSK SKLRREFEVYGPIKRIHMVYSKRSGKPRGY EVYGPIKRIHMVYSKRSGKPRGYAFIEYEH R I H S K R 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 1 1 0 0 7 0 876.45276 P08621 P08621 132 138 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.023134 98.503 By matching By MS/MS By MS/MS 3 1.22 1 1 2 1 2 1 15046000 698240 8932400 5415500 5980 474 6227 25260;25261;25262;25263 21330;21331 21330 2 698240 3050700 884530 IHNIDIPTTQQVPHIEALLK EEARLKEAQLRNELKIHNIDIPTTQQVPHI IPTTQQVPHIEALLKRKLSEQEELKKKPRR K I H L K R 1 0 1 1 0 2 1 0 2 4 2 1 0 0 2 0 2 0 0 1 0 0 20 0 2279.2638 A6NHR9 A6NHR9 1674 1693 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3;4 0.0002807 68.189 By MS/MS 1 0 2 2 32270000 0 0 32270000 5981 15 6228 25264;25265 21332;21333 21332 2 0 0 6953000 IHPMAYQLQLQAASNFK KRPANQFVPRLYGFKIHPMAYQLQLQAASN PMAYQLQLQAASNFKSPVKTIR________ K I H F K S 3 0 1 0 0 3 0 0 1 1 2 1 1 1 1 1 0 0 1 0 0 0 17 0 1959.0037 P67870 P67870 192 208 CSNK2B Casein kinase II subunit beta yes yes 3 1.8402E-06 115.04 By matching By MS/MS 7 0 2 1 1 31783000 0 1757800 30026000 5982 1073 6229 25266;25267 21334 21334 1 0 1009300 5327900 IHPTSVISGYR AAELLKNADELVKQKIHPTSVISGYRLACK VKQKIHPTSVISGYRLACKEAVRYINENLI K I H Y R L 0 1 0 0 0 0 0 1 1 2 0 0 0 0 1 2 1 0 1 1 0 0 11 0 1228.6564 P17987 P17987 112 122 TCP1 T-complex protein 1 subunit alpha yes yes 2;3 0.00062713 118.18 By matching By MS/MS By MS/MS 3.57 0.904 1 2 3 1 1 3 3 35560000 415180 17810000 17334000 5983 591 6230 25268;25269;25270;25271;25272;25273;25274 21335;21336;21337;21338 21336 4 500240 5985500 2946500 IHQESELHSYLSR RIAKKKRWNSIEERRIHQESELHSYLSRLI RRIHQESELHSYLSRLIAAERERELEECQR R I H S R L 0 1 0 0 0 1 2 0 2 1 2 0 0 0 0 3 0 0 1 0 0 0 13 0 1597.7849 Q9UNE7 Q9UNE7 155 167 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2;3;4 0.00060315 104.24 By MS/MS By MS/MS 6.29 0.452 5 2 2 5 82457000 0 8592200 73865000 5984 2204 6231 25275;25276;25277;25278;25279;25280;25281 21339;21340;21341;21342 21341 4 0 2974300 11162000 IHQHILPQGQGMLSGIGR SGSQLIRLIPESSGKIHQHILPQGQGMLSG HILPQGQGMLSGIGRKVSSLFGILSPSSDL K I H G R K 0 1 0 0 0 3 0 4 2 3 2 0 1 0 1 1 0 0 0 0 0 0 18 0 1941.0367 Q8WUM0 Q8WUM0 240 257 NUP133 Nuclear pore complex protein Nup133 yes yes 3 1.8311E-06 107.62 By MS/MS 2 0 1 1 11472000 0 0 11472000 5985 1675 6232 25282 21343 21343 1 0 0 2592400 IHSDCAANQQVTYR CREGEDNSKRNPIAKIHSDCAANQQVTYRI KIHSDCAANQQVTYRISGVGIDQPPYGIFV K I H Y R I 2 1 1 1 1 2 0 0 1 1 0 0 0 0 0 1 1 0 1 1 0 0 14 0 1661.758 Q02413 Q02413 73 86 DSG1 Desmoglein-1 yes yes 3 0.003212 75.669 By MS/MS 7 3.16 1 1 1 1 1 5 4186600 4186600 0 0 5986 1146 6233 25283;25284;25285;25286;25287 21344;21345;21346;21347 21344 4 4861400 0 0 IHVFYIDYGNR EWYRARVEKVESPAKIHVFYIDYGNREVLP SPAKIHVFYIDYGNREVLPSTRLGTLSPAF K I H N R E 0 1 1 1 0 0 0 1 1 2 0 0 0 1 0 0 0 0 2 1 0 0 11 0 1395.6935 Q7KZF4 Q7KZF4 759 769 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 1.3189E-09 168.27 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 50569000 0 7763500 42805000 5987 1518 6234 25288;25289;25290;25291;25292 21348;21349;21350 21350 3 0 3496000 9612000 IHVYGYSMAYGPAQHAISTEK CLGGGRISHQSQDKKIHVYGYSMAYGPAQH SMAYGPAQHAISTEKIKAKYPDYEVTWAND K I H E K I 3 0 0 0 0 1 1 2 2 2 0 1 1 0 1 2 1 0 3 1 0 0 21 0 2322.1103 Q9NRX4 Q9NRX4 88 108 PHPT1 14 kDa phosphohistidine phosphatase yes yes 3 2.635E-14 121.77 By MS/MS 9 0 1 1 6515800 0 0 6515800 5988 2049 6235 25293 21351 21351 1 0 0 2081400 IHWESASLLR VSLQLPSRSSKITHRIHWESASLLRSEETK KITHRIHWESASLLRSEETKENEGFTVTAE R I H L R S 1 1 0 0 0 0 1 0 1 1 2 0 0 0 0 2 0 1 0 0 0 0 10 0 1210.6459 P01024 P01024 1311 1320 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 0.00015519 112.8 By MS/MS 9.5 0.5 1 1 2 3905000 3905000 0 0 5989 371 6236 25294;25295 21352 21352 1 2645000 0 0 IHYPHVYDSQAEAMK SVPILSRQRDADVEKIHYPHVYDSQAEAMK IHYPHVYDSQAEAMKTSAFIAGAKMILPEG K I H M K T 2 0 0 1 0 1 1 0 2 1 0 1 1 0 1 1 0 0 2 1 0 0 15 0 1787.8301 Q8N3C0 Q8N3C0 400 414 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.023428 50.024 By MS/MS 1 0 1 1 4350700 0 4350700 0 5990 1602 6237 25296 21353 21353 1 0 2126500 0 IIAATIENAQPILQIDNAR DYSPYFKTIEDLRNKIIAATIENAQPILQI TIENAQPILQIDNARLAADDFRTKYEHELA K I I A R L 4 1 2 1 0 2 1 0 0 5 1 0 0 0 1 0 1 0 0 0 0 0 19 0 2063.1375 CON__P08779;P08779 CON__P08779 178 196 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 1.4028E-232 316.65 By MS/MS By MS/MS By MS/MS 5.07 2.9 5 5 6 5 4 4 3 3 4 4 18 6 19 540900000 340500000 12983000 187420000 + 5991 53 6238 25297;25298;25299;25300;25301;25302;25303;25304;25305;25306;25307;25308;25309;25310;25311;25312;25313;25314;25315;25316;25317;25318;25319;25320;25321;25322;25323;25324;25325;25326;25327;25328;25329;25330;25331;25332;25333;25334;25335;25336;25337;25338;25339 21354;21355;21356;21357;21358;21359;21360;21361;21362;21363;21364;21365;21366;21367;21368;21369;21370;21371;21372;21373;21374;21375;21376;21377;21378;21379;21380;21381;21382;21383;21384;21385;21386;21387;21388;21389;21390;21391 21359 36 285920000 5004300 40121000 IIAHAQLLEQHR ELTRIDRWFLHRMKRIIAHAQLLEQHRGQP MKRIIAHAQLLEQHRGQPLPPDLLQQAKCL R I I H R G 2 1 0 0 0 2 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1427.7997 P27708 P27708 843 854 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 3 0.00071395 105.65 By MS/MS By matching 1.5 0.5 1 1 1 1 19706000 0 17391000 2314500 5992 681 6239 25340;25341 21392 21392 1 0 8500600 523020 IIAHFLIQQYLK AGVVAPTLPREDLEKIIAHFLIQQYLKEDY LEKIIAHFLIQQYLKEDYSFTAYATISYLK K I I L K E 1 0 0 0 0 2 0 0 1 3 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1485.8708 P46063 P46063 545 556 RECQL ATP-dependent DNA helicase Q1 yes yes 2;3 4.9635E-06 113.93 By MS/MS By MS/MS 3 0 3 1 2 6929900 0 1619800 5310100 5993 823 6240 25342;25343;25344 21393;21394;21395 21395 3 0 690520 1029900 IIAPPERK QKEITALAPSTMKIKIIAPPERKYSVWIGG PSTMKIKIIAPPERKYSVWIGGSILASLST K I I R K Y 1 1 0 0 0 0 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 0 8 1 922.56 P60709;P63261;P68032;P63267;P68133;P62736;Q562R1 P60709 329 336 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 2 0.020138 91.9 By MS/MS 5.5 0.5 1 1 2 24891000 0 24891000 0 5994 966;1069;1075;1430 6241 25345;25346 21396;21397 21396 2 0 6916100 0 IIASSPEMNLPTVSALR LARGFTAAGILSAHKIIASSPEMNLPTVSA ASSPEMNLPTVSALRKMGVNLTRSNKETVK K I I L R K 2 1 1 0 0 0 1 0 0 2 2 0 1 0 2 3 1 0 0 1 0 0 17 0 1797.9659 Q96C36 Q96C36 30 46 PYCR2 Pyrroline-5-carboxylate reductase 2 yes yes 2 0.02873 59.116 By MS/MS 6 0 1 1 2840500 0 2840500 0 5995 1758 6242 25347 21398 21398 665 1 0 983290 0 IIDDSEITKEDDALWPPPDR KEAYVHKSVMEELKRIIDDSEITKEDDALW EITKEDDALWPPPDRVGRQELEIVIGDEHI R I I D R V 1 1 0 5 0 0 2 0 0 3 1 1 0 0 3 1 1 1 0 0 0 0 20 1 2324.1172 P61326;Q96A72 Q96A72 65 84 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2;3 2.109E-103 259.96 By MS/MS By MS/MS 8 0 3 1 2 71020000 0 4239600 66780000 5996 992;1748 6243 25348;25349;25350 21399;21400;21401;21402 21402 4 0 1928900 10238000 IIDEDGLLNLIR SGQSKSDKAAALGTKIIDEDGLLNLIRTMP GTKIIDEDGLLNLIRTMPGKKSKYEIAVET K I I I R T 0 1 1 2 0 0 1 1 0 3 3 0 0 0 0 0 0 0 0 0 0 0 12 0 1382.7769 P35251 P35251 469 480 RFC1 Replication factor C subunit 1 yes yes 2 1.3346E-12 183.47 By MS/MS 1.5 0.5 1 1 2 16550000 0 0 16550000 5997 746 6244 25351;25352 21403;21404 21404 2 0 0 3689600 IIDETMAQLQDLK NEIEKLKKEEQRHMKIIDETMAQLQDLKNQ MKIIDETMAQLQDLKNQHLAKKSEVNDKNH K I I L K N 1 0 0 2 0 2 1 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 13 0 1516.7807 Q14683 Q14683 862 874 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 2.0606E-17 192.55 By matching By MS/MS By MS/MS 1.33 0.471 4 2 1 2 3 133590000 1191700 10829000 121570000 5998 1312 6245;6246 25353;25354;25355;25356;25357;25358 21405;21406;21407;21408 21408 596 4 1191700 5292800 27025000 IIDETMAQLQDLKNQHLAK NEIEKLKKEEQRHMKIIDETMAQLQDLKNQ TMAQLQDLKNQHLAKKSEVNDKNHEMEEIR K I I A K K 2 0 1 2 0 3 1 0 1 2 3 2 1 0 0 0 1 0 0 0 0 0 19 1 2208.1573 Q14683 Q14683 862 880 SMC1A Structural maintenance of chromosomes protein 1A yes yes 3 0.00012457 86.479 By MS/MS 2 0 1 1 6039700 0 6039700 0 5999 1312 6247 25359 21409 21409 1 0 2719700 0 IIDEVVNK IRNPQQQESLKHATRIIDEVVNKFLDDLGN SLKHATRIIDEVVNKFLDDLGNAKSHLMSL R I I N K F 0 0 1 1 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 928.52295 O95816 O95816 116 123 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.018082 85.813 By MS/MS By MS/MS 7 0 2 1 1 112210000 0 25536000 86671000 6000 342 6248 25360;25361 21410;21411 21411 2 0 14663000 15379000 IIDFLSALEGFK SRAIMYEETTYSKKKIIDFLSALEGFKVMC KKKIIDFLSALEGFKVMCKIIGIMEEVADG K I I F K V 1 0 0 1 0 0 1 1 0 2 2 1 0 2 0 1 0 0 0 0 0 0 12 0 1351.7388 P52701 P52701 855 866 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.00012454 137.98 By MS/MS 2.5 1.12 1 1 1 1 4 9193600 0 0 9193600 6001 911 6249 25362;25363;25364;25365 21412;21413;21414 21413 3 0 0 1929100 IIDGLLVMR SKCDWLDGKHVVFGKIIDGLLVMRKIENVP HVVFGKIIDGLLVMRKIENVPTGPNNKPKL K I I M R K 0 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 0 0 0 1 0 0 9 0 1028.6052 O43447 O43447 144 152 PPIH Peptidyl-prolyl cis-trans isomerase H yes yes 2 0.00028022 139.68 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 25248000 0 5946100 19301000 6002 198 6250 25366;25367;25368;25369 21415;21416;21417;21418 21417 4 0 3068800 3179600 IIDISDVFR ATYGTDKPDTRFGMKIIDISDVFRNTEIGF TRFGMKIIDISDVFRNTEIGFLQDALSKPH K I I F R N 0 1 0 2 0 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 9 0 1076.5866 Q6PI48 Q6PI48 341 349 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 2 4.1256E-32 203.57 By MS/MS By MS/MS 3 0 2 1 1 12755000 0 1057800 11697000 6003 1495 6251 25370;25371 21419;21420 21420 2 0 450960 2268800 IIDTPQFQR DPIHGHIELHPLLVRIIDTPQFQRLRYIKQ HPLLVRIIDTPQFQRLRYIKQLGGGYYVFP R I I Q R L 0 1 0 1 0 2 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 0 9 0 1116.5928 Q9Y3Z3 Q9Y3Z3 135 143 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes yes 2 0.031756 76.774 By MS/MS 3 0 1 1 5535200 0 5535200 0 6004 2281 6252 25372 21421 21421 1 0 2359700 0 IIDVVQDHYVDWEQDMER KLEEEEQAMYEMVKKIIDVVQDHYVDWEQD VVQDHYVDWEQDMERYPYVGILHVRDSLIP K I I E R Y 0 1 0 4 0 2 2 0 1 2 0 0 1 0 0 0 0 1 1 3 0 0 18 0 2289.0372 Q8NC56 Q8NC56 418 435 LEMD2 LEM domain-containing protein 2 yes yes 3 3.4258E-09 121.03 By MS/MS 4 0 1 1 20466000 0 0 20466000 6005 1631 6253 25373 21422 21422 1 0 0 3342800 IIDVVYNASNNELVR GNFSWGSECCTRKTRIIDVVYNASNNELVR IIDVVYNASNNELVRTKTLVKNCIVLIDST R I I V R T 1 1 3 1 0 0 1 0 0 2 1 0 0 0 0 1 0 0 1 3 0 0 15 0 1717.8999 P62241 P62241 78 92 RPS8 40S ribosomal protein S8 yes yes 2;3 3.417E-127 271.14 By MS/MS By MS/MS By MS/MS 6.55 2.48 2 1 1 2 3 5 1 1 4 2 10 8 837110000 9086300 217320000 610700000 6006 1008 6254 25374;25375;25376;25377;25378;25379;25380;25381;25382;25383;25384;25385;25386;25387;25388;25389;25390;25391;25392;25393 21423;21424;21425;21426;21427;21428;21429;21430;21431;21432;21433;21434;21435;21436;21437;21438;21439 21436 16 15006000 141470000 123140000 IIDYSQMDELALLSLR FNPEAFKPGNTHKCRIIDYSQMDELALLSL IDYSQMDELALLSLRTSIIEAQYLRYHDIE R I I L R T 1 1 0 2 0 1 1 0 0 2 4 0 1 0 0 2 0 0 1 0 0 0 16 0 1878.9761 Q14690 Q14690 421 436 PDCD11 Protein RRP5 homolog yes yes 2;3 2.5398E-18 185.59 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 22232000 0 1538200 20694000 6007 1314 6255 25394;25395;25396;25397 21440;21441;21442 21441 3 0 736470 4458700 IIEDQQESLNK WEVLEGEVEKEALKKIIEDQQESLNKWKSK ALKKIIEDQQESLNKWKSKGRRFKGKGKGN K I I N K W 0 0 1 1 0 2 2 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 11 0 1315.662 P05455 P05455 318 328 SSB Lupus La protein yes yes 2 8.1565E-10 170.69 By MS/MS 5 0 1 1 24751000 0 24751000 0 6008 434 6256 25398 21443 21443 1 0 6379900 0 IIEENIPELLSLNLSNNR DVVLNRRSCMAATLRIIEENIPELLSLNLS ENIPELLSLNLSNNRLYRLDDMSSIVQKAP R I I N R L 0 1 4 0 0 0 3 0 0 3 4 0 0 0 1 2 0 0 0 0 0 0 18 0 2080.1164 Q9UBU9 Q9UBU9 259 276 NXF1 Nuclear RNA export factor 1 yes yes 2;3 3.1868E-09 128.9 By MS/MS 3.33 0.471 2 1 3 27477000 0 0 27477000 6009 2136 6257 25399;25400;25401 21444;21445 21445 2 0 0 5246600 IIENAENEYQTAISENYQTMSDTTFK LTVSNEAQTAKEFIKIIENAENEYQTAISE AISENYQTMSDTTFKALRRQLPVTRTKIDW K I I F K A 2 0 3 1 0 2 4 0 0 3 0 1 1 1 0 2 4 0 2 0 0 0 26 0 3039.3655 P52907 P52907 231 256 CAPZA1 F-actin-capping protein subunit alpha-1 yes yes 3 1.3472E-33 171.52 By MS/MS By matching 6 0 2 1 1 17895000 0 6412900 11482000 6010 914 6258 25402;25403 21446 21446 1 0 2219900 1717900 IIEPLTSR SKTTRFCLICNYVSRIIEPLTSRCSKFRFK ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ R I I S R C 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 1 0 0 0 0 0 8 0 927.53893 P35249 P35249 186 193 RFC4 Replication factor C subunit 4 yes yes 2 0.006677 97.798 By matching By MS/MS By MS/MS 6 0 3 1 1 1 18508000 2521400 5396900 10590000 6011 744 6259 25404;25405;25406 21447;21448 21448 2 3357300 1868200 1584400 IIEPQGLR LKPGRLAKHLEVDVRIIEPQGLRSLHVLDT HLEVDVRIIEPQGLRSLHVLDTFDGHFDGV R I I L R S 0 1 0 0 0 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 8 0 924.53927 CON__Q9TRI1 CON__Q9TRI1 215 222 yes yes 2 0.045643 80.462 By MS/MS 10 0 1 1 0 0 0 0 + 6012 99 6260 25407 21449 21449 1 0 0 0 IIETLTQQLQAK EVLPALENNKEQIQKIIETLTQQLQAKGKE IQKIIETLTQQLQAKGKELNEFREKHNIRL K I I A K G 1 0 0 0 0 3 1 0 0 2 2 1 0 0 0 0 2 0 0 0 0 0 12 0 1384.7926 Q9UHV9 Q9UHV9 100 111 PFDN2 Prefoldin subunit 2 yes yes 2 5.2001E-35 214.93 By MS/MS 8 0 1 1 10195000 0 10195000 0 6013 2157 6261 25408 21450 21450 1 0 4638200 0 IIFVDEVFK YANVVLGDDSLNDCRIIFVDEVFKIERPGE SLNDCRIIFVDEVFKIERPGEGSPMVDNPM R I I F K I 0 0 0 1 0 0 1 0 0 2 0 1 0 2 0 0 0 0 0 2 0 0 9 0 1108.6168 Q96T88 Q96T88 271 279 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.019656 82.452 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 34426000 0 2019200 32407000 6014 1841 6262 25409;25410;25411;25412 21451;21452;21453 21452 3 0 909290 6726900 IIGATDSCGDLMFLMK NDIARGFERGLEPEKIIGATDSCGDLMFLM IGATDSCGDLMFLMKWKDTDEADLVLAKEA K I I M K W 1 0 0 2 1 0 0 2 0 2 2 1 2 1 0 1 1 0 0 0 0 0 16 0 1770.8354 P45973 P45973 126 141 CBX5 Chromobox protein homolog 5 yes yes 2 4.0916E-05 118.48 By MS/MS 6.75 0.433 1 3 4 77136000 0 0 77136000 6015 820 6263;6264 25413;25414;25415;25416 21454;21455;21456 21456 400;401 3 0 0 13515000 IIGATDSSGELMFLMK ADKPRGFARGLDPERIIGATDSSGELMFLM IGATDSSGELMFLMKWKDSDEADLVLAKEA R I I M K W 1 0 0 1 0 0 1 2 0 2 2 1 2 1 0 2 1 0 0 0 0 0 16 0 1711.8525 Q13185;P83916 Q13185 126 141 CBX3;CBX1 Chromobox protein homolog 3;Chromobox protein homolog 1 no no 2;3 1.3902E-12 178.67 By MS/MS By MS/MS By MS/MS 7 1.59 1 1 1 3 16 3 4 1 2 8 20 1579200000 1731700 192220000 1385200000 6016 1228;1109 6265;6266;6267 25417;25418;25419;25420;25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440;25441;25442;25443;25444;25445;25446 21457;21458;21459;21460;21461;21462;21463;21464;21465;21466;21467;21468;21469;21470;21471;21472;21473;21474;21475;21476;21477;21478;21479;21480;21481;21482;21483 21472 525;526 27 3732200 109530000 250440000 IIGAVDQIQLTQAQLEER SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL AVDQIQLTQAQLEERQAEMEGAVQSIQGEL K I I E R Q 2 1 0 1 0 4 2 1 0 3 2 0 0 0 0 0 1 0 0 1 0 0 18 0 2024.0902 Q6NZI2 Q6NZI2 61 78 PTRF Polymerase I and transcript release factor yes yes 2 1.2282E-51 222.94 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 37226000 0 9118600 28108000 6017 1483 6268 25447;25448;25449;25450 21484;21485 21485 2 0 2723300 4540900 IIGFGSALLEEVDPNPANFVGAGIIHTK FKAKHPMDTEVTKAKIIGFGSALLEEVDPN PNPANFVGAGIIHTKTTQIGCLLRLEPNLQ K I I T K T 3 0 2 1 0 0 2 4 1 4 2 1 0 2 2 1 1 0 0 2 0 0 28 0 2878.5229 O94973 O94973 870 897 AP2A2 AP-2 complex subunit alpha-2 yes yes 3 3.2209E-07 66.282 By MS/MS 2 0 1 1 3916600 0 0 3916600 6018 306 6269 25451 21486 21486 1 0 0 885080 IIGGMWR VKASNPDLKLWEIGKIIGGMWRDLTDEEKQ LKLWEIGKIIGGMWRDLTDEEKQEYLNEYE K I I W R D 0 1 0 0 0 0 0 2 0 2 0 0 1 0 0 0 0 1 0 0 0 0 7 0 831.44253 Q969G3 Q969G3 99 105 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 2 0.027632 94.669 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 18090000 0 4053200 14037000 6019 1741 6270 25452;25453;25454 21487;21488 21488 2 0 1345100 2241600 IIGHFFASQTAQR PRDQTPDENEEVIVRIIGHFFASQTAQRKI VRIIGHFFASQTAQRKIREIVQQVKQQEQK R I I Q R K 2 1 0 0 0 2 0 1 1 2 0 0 0 2 0 1 1 0 0 0 0 0 13 0 1474.7681 Q9Y6M1 Q9Y6M1 561 573 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2;3 3.1033E-05 150.06 By MS/MS By MS/MS 4.67 1.7 2 2 2 4 2 103250000 0 64731000 38516000 6020 2315 6271 25455;25456;25457;25458;25459;25460 21489;21490;21491;21492;21493 21489 5 0 25483000 7429900 IIGHFYASQMAQR PRDQTPDENDQVIVKIIGHFYASQMAQRKI VKIIGHFYASQMAQRKIRDILAQVKQQHQK K I I Q R K 2 1 0 0 0 2 0 1 1 2 0 0 1 1 0 1 0 0 1 0 0 0 13 0 1520.7558 Q9NZI8 Q9NZI8 539 551 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 2.7404E-06 162.26 By matching By MS/MS By MS/MS 5.62 2.2 5 1 1 2 5 1 1 1 8 7 395990000 9322000 200000000 186660000 6021 2104 6272;6273 25461;25462;25463;25464;25465;25466;25467;25468;25469;25470;25471;25472;25473;25474;25475;25476 21494;21495;21496;21497;21498;21499;21500;21501;21502;21503;21504 21501 700 10 10756000 95348000 34668000 IIGLDQVAGMSETALPGAFK SSDKFVSELWKDVDRIIGLDQVAGMSETAL QVAGMSETALPGAFKTRKGMFRTVGQLYKE R I I F K T 3 0 0 1 0 1 1 3 0 2 2 1 1 1 1 1 1 0 0 1 0 0 20 0 2017.0554 P35579 P35579 618 637 MYH9 Myosin-9 yes yes 2;3 2.2365E-57 224.16 By matching By MS/MS By MS/MS 1.83 0.898 8 6 3 1 1 11 6 894660000 682750 771380000 122600000 6022 752 6274;6275 25477;25478;25479;25480;25481;25482;25483;25484;25485;25486;25487;25488;25489;25490;25491;25492;25493;25494 21505;21506;21507;21508;21509;21510;21511;21512;21513;21514;21515;21516;21517;21518;21519;21520;21521;21522;21523 21511 349 19 682750 374320000 26258000 IIGLDQVAGMSETALPGAFKTR SSDKFVSELWKDVDRIIGLDQVAGMSETAL AGMSETALPGAFKTRKGMFRTVGQLYKEQL R I I T R K 3 1 0 1 0 1 1 3 0 2 2 1 1 1 1 1 2 0 0 1 0 0 22 1 2274.2042 P35579 P35579 618 639 MYH9 Myosin-9 yes yes 3 2.287E-07 87.156 By MS/MS 1 0 1 1 1334600 0 1334600 0 6023 752 6276 25495 21524 21524 1 0 652350 0 IIGNLLYYR LHEKFPDAGEDELLKIIGNLLYYRYMNPAI EDELLKIIGNLLYYRYMNPAIVAPDAFDII K I I Y R Y 0 1 1 0 0 0 0 1 0 2 2 0 0 0 0 0 0 0 2 0 0 0 9 0 1123.639 P46940 P46940 1186 1194 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 1.4302E-16 178.65 By matching By MS/MS By MS/MS 2.33 1.15 3 2 2 2 1 4 4 98767000 1693000 61407000 35666000 6024 835 6277 25496;25497;25498;25499;25500;25501;25502;25503;25504 21525;21526;21527;21528;21529;21530;21531;21532 21530 8 1693000 26860000 7552500 IIHDFPQFYPLGIVQHD DSHPFDLGLYNEAVKIIHDFPQFYPLGIVQ HDFPQFYPLGIVQHD_______________ K I I H D - 0 0 0 2 0 2 0 1 2 3 1 0 0 2 2 0 0 0 1 1 0 0 17 0 2038.0312 P35244 P35244 105 121 RPA3 Replication protein A 14 kDa subunit yes yes 2;3 8.5054E-20 193.06 By MS/MS By MS/MS 8.67 0.471 2 4 2 4 381040000 75744000 0 305290000 6025 743 6278 25505;25506;25507;25508;25509;25510 21533;21534;21535;21536;21537 21534 5 42516000 0 96370000 IIHTSVWAGQK AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ LFLKIIHTSVWAGQKRLGQLAKWKTAEEVA K I I Q K R 1 0 0 0 0 1 0 1 1 2 0 1 0 0 0 1 1 1 0 1 0 0 11 0 1238.6772 Q6P2Q9 Q6P2Q9 1821 1831 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 3.7882E-19 189 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 128200000 0 49648000 78550000 6026 1490 6279 25511;25512;25513;25514;25515 21538;21539;21540;21541 21539 4 0 24267000 16972000 IIIAEVVNK KNPKYKKLKDAIEEKIIIAEVVNKINRANG DAIEEKIIIAEVVNKINRANGKSTSRIFLL K I I N K I 1 0 1 0 0 0 1 0 0 3 0 1 0 0 0 0 0 0 0 2 0 0 9 0 997.61718 O43795 O43795 987 995 MYO1B Unconventional myosin-Ib yes yes 2 0.04397 73.248 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 13607000 0 3837200 9770100 6027 212 6280 25516;25517;25518 21542;21543 21543 2 0 1751600 2207800 IIIKNFDIPK CLQLGANKAQDNTRKIIIKNFDIPKSVRPN DNTRKIIIKNFDIPKSVRPNDEVTAVLAVQ K I I P K S 0 0 1 1 0 0 0 0 0 4 0 2 0 1 1 0 0 0 0 0 0 0 10 1 1199.7278 P12273 P12273 35 44 PIP Prolactin-inducible protein yes yes 3 0.016141 67.726 By MS/MS 7 2 1 1 1 1 1 1 1 7 9283000 9283000 0 0 6028 537 6281 25519;25520;25521;25522;25523;25524;25525 21544 21544 1 9490200 0 0 IIILDEADSMTDGAQQALR MFAQQKVTLPKGRHKIIILDEADSMTDGAQ DEADSMTDGAQQALRRTMEIYSKTTRFALA K I I L R R 3 1 0 3 0 2 1 1 0 3 2 0 1 0 0 1 1 0 0 0 0 0 19 0 2059.0256 P35250 P35250 137 155 RFC2 Replication factor C subunit 2 yes yes 2 8.771E-52 219.42 By MS/MS 5.5 0.5 1 1 2 12082000 0 0 12082000 6029 745 6282 25526;25527 21545 21545 1 0 0 1757100 IIITEDGEFK SKVYMHLPQTDNKKKIIITEDGEFKALQEW DNKKKIIITEDGEFKALQEWILETDGVSLM K I I F K A 0 0 0 1 0 0 2 1 0 3 0 1 0 1 0 0 1 0 0 0 0 0 10 0 1163.6074 P24928 P24928 1320 1329 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.054651 71.614 By MS/MS 1 0 1 1 3346300 0 3346300 0 6030 653 6283 25528 21546 21546 1 0 1635600 0 IIKDFMIQGGDPTGTGR ELARRGYYNGTKFHRIIKDFMIQGGDPTGT KDFMIQGGDPTGTGRGGASIYGKQFEDELH R I I G R G 0 1 0 2 0 1 0 4 0 3 0 1 1 1 1 0 2 0 0 0 0 0 17 1 1804.9142 Q9Y3C6 Q9Y3C6 56 72 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 3 0.019259 47.752 By MS/MS By matching 8.33 0.471 2 1 2 1 27749000 0 25028000 2721700 6031 2269 6284;6285 25529;25530;25531 21547;21548 21548 733 2 0 11387000 869420 IIKPLQYQSTVASGTVAR LNMYRQKERRNSRGKIIKPLQYQSTVASGT PLQYQSTVASGTVARVEPNIKWFGNTRVIK K I I A R V 2 1 0 0 0 2 0 1 0 2 1 1 0 0 1 2 2 0 1 2 0 0 18 1 1931.084 Q13823 Q13823 56 73 GNL2 Nucleolar GTP-binding protein 2 yes yes 2;3 3.2395E-09 133.15 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 55775000 0 18378000 37397000 6032 1269 6286 25532;25533;25534;25535 21549;21550;21551 21549 3 0 8275700 8116100 IIKPVLTQESATYIAEEYSR MVSAAFMKKYIHVAKIIKPVLTQESATYIA LTQESATYIAEEYSRLRSQDSMSSDTARTS K I I S R L 2 1 0 0 0 1 3 0 0 3 1 1 0 0 1 2 2 0 2 1 0 0 20 1 2310.2107 P25205 P25205 577 596 MCM3 DNA replication licensing factor MCM3 yes yes 3 0.00085973 65.184 By MS/MS 2 0 1 1 7366900 0 7366900 0 6033 655 6287 25536 21552 21552 1 0 3317400 0 IILDLISESPIK VLIGGKPDRVVECIKIILDLISESPIKGRA CIKIILDLISESPIKGRAQPYDPNFYDETY K I I I K G 0 0 0 1 0 0 1 0 0 4 2 1 0 0 1 2 0 0 0 0 0 0 12 0 1339.7963 P61978 P61978 208 219 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 4.5919E-18 192.26 By MS/MS By MS/MS 5.17 2.83 2 2 2 2 2 2 2 1 1 2 8 10 906580000 0 370180000 536410000 6034 1002 6288 25537;25538;25539;25540;25541;25542;25543;25544;25545;25546;25547;25548;25549;25550;25551;25552;25553;25554 21553;21554;21555;21556;21557;21558;21559;21560;21561;21562;21563;21564;21565;21566;21567;21568;21569;21570;21571;21572;21573;21574;21575;21576;21577;21578 21557 26 0 130610000 92522000 IILEPMDLK FMVKPSKKDYPDYYKIILEPMDLKIIEHNI YPDYYKIILEPMDLKIIEHNIRNDKYAGEE K I I L K I 0 0 0 1 0 0 1 0 0 2 2 1 1 0 1 0 0 0 0 0 0 0 9 0 1070.6046 Q86U86 Q86U86 561 569 PBRM1 Protein polybromo-1 yes yes 2 0.022712 80.438 By MS/MS By MS/MS 1 0 2 1 1 18354000 0 2509200 15844000 6035 1545 6289 25555;25556 21579;21580 21580 2 0 1226400 3413900 IILLAEGR IKPQVDRYRLKNGRRIILLAEGRLVNLGCA RLKNGRRIILLAEGRLVNLGCAMGHPSFVM R I I G R L 1 1 0 0 0 0 1 1 0 2 2 0 0 0 0 0 0 0 0 0 0 0 8 0 883.5491 P23526 P23526 336 343 AHCY Adenosylhomocysteinase yes yes 2 0.0044378 101.64 By MS/MS 5 0 1 1 5104700 5104700 0 0 6036 643 6290 25557 21581 21581 1 4089500 0 0 IILQPCGSK TGSFSSSSSSQSSGKIILQPCGSKSSSSGH SQSSGKIILQPCGSKSSSSGHPCMSVSSLT K I I S K S 0 0 0 0 1 1 0 1 0 2 1 1 0 0 1 1 0 0 0 0 0 0 9 0 1014.5532 Q15517 Q15517 443 451 CDSN Corneodesmosin yes yes 2 0.057219 69.423 By MS/MS 9.5 0.5 1 1 2 4185500 4185500 0 0 6037 1372 6291 25558;25559 21582 21582 1 5387000 0 0 IILTEQANEK GLSEAAGQTAQMLERIILTEQANEKMNAKL QMLERIILTEQANEKMNAKLEELRQHAACK R I I E K M 1 0 1 0 0 1 2 0 0 2 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1157.6292 O95239 O95239 420 429 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.00013389 144.09 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 41516000 0 10209000 31307000 6038 314 6292 25560;25561;25562;25563 21583;21584 21584 2 0 4597200 6845400 IIMPPSALDQLSR LAGPNDRSDVEKGGKIIMPPSALDQLSRLN GKIIMPPSALDQLSRLNITYPMLFKLTNKN K I I S R L 1 1 0 1 0 1 0 0 0 2 2 0 1 0 2 2 0 0 0 0 0 0 13 0 1439.7806 Q92890 Q92890 46 58 UFD1L Ubiquitin fusion degradation protein 1 homolog yes yes 2 0.0044528 101.95 By MS/MS By MS/MS 6 0 2 1 1 7324000 0 3236800 4087200 6039 1728 6293 25564;25565 21585;21586 21586 2 0 1120500 611490 IIMYDQNHLLGR DLITQATLLYTMADKIIMYDQNHLLGRACF ADKIIMYDQNHLLGRACFCLLEGDKMDQAD K I I G R A 0 1 1 1 0 1 0 1 1 2 2 0 1 0 0 0 0 0 1 0 0 0 12 0 1471.7606 Q6PD62 Q6PD62 123 134 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 3 0.0027129 88.187 By MS/MS 1.5 0.5 1 1 2 12266000 0 0 12266000 6040 1494 6294 25566;25567 21587 21587 1 0 0 2733500 IINDLLQSLR AHIMGPPDRCEHAARIINDLLQSLRSGPPG EHAARIINDLLQSLRSGPPGPPGGPGMPPG R I I L R S 0 1 1 1 0 1 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1183.6925 Q92945 Q92945 385 394 KHSRP Far upstream element-binding protein 2 yes yes 2 1.6858E-62 237.08 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 3 5 102930000 0 44614000 58318000 6041 1733 6295 25568;25569;25570;25571;25572;25573;25574;25575 21588;21589;21590;21591;21592;21593 21592 6 0 18092000 11460000 IINEPTAAAIAYGLDK ATKDAGTIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDKKVGAERNVLIFDLGG R I I D K K 4 0 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 16 0 1658.8879 P54652;P11021;P11142 P11142 172 187 HSPA2;HSPA5;HSPA8 Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein;Heat shock cognate 71 kDa protein no no 2;3 3.6378E-05 136.83 By MS/MS By MS/MS By MS/MS 5.05 2.82 2 1 6 2 2 1 2 1 2 2 3 9 9 489830000 14679000 128370000 346780000 6042 517;516;930 6296 25576;25577;25578;25579;25580;25581;25582;25583;25584;25585;25586;25587;25588;25589;25590;25591;25592;25593;25594;25595;25596 21594;21595;21596;21597;21598;21599;21600;21601;21602;21603;21604;21605;21606;21607;21608;21609;21610;21611;21612;21613 21595 20 16813000 61092000 70979000 IINEPTAAAIAYGLDKK ATKDAGTIAGLNVLRIINEPTAAAIAYGLD NEPTAAAIAYGLDKKVGAERNVLIFDLGGG R I I K K V 4 0 1 1 0 0 1 1 0 3 1 2 0 0 1 0 1 0 1 0 0 0 17 1 1786.9829 P54652;P11142 P11142 172 188 HSPA2;HSPA8 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein no no 2;3 2.9294E-06 134.21 By MS/MS By MS/MS By MS/MS 4.12 2.34 2 2 4 2 1 3 1 1 2 7 7 807570000 3631100 346070000 457870000 6043 517;930 6297 25597;25598;25599;25600;25601;25602;25603;25604;25605;25606;25607;25608;25609;25610;25611;25612 21614;21615;21616;21617;21618;21619;21620;21621;21622;21623;21624;21625;21626 21617 13 4499300 146460000 98727000 IINEPTAAAIAYGLDKR ATKDAGTIAGLNVMRIINEPTAAAIAYGLD NEPTAAAIAYGLDKREGEKNILVFDLGGGT R I I K R E 4 1 1 1 0 0 1 1 0 3 1 1 0 0 1 0 1 0 1 0 0 0 17 1 1814.989 P11021 P11021 198 214 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 1.309E-05 130.07 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 29163000 0 4020800 25142000 6044 516 6298 25613;25614;25615 21627;21628;21629 21627 3 0 1714100 5057600 IINEPTAAAIAYGLDR ATKDAGVIAGLNVLRIINEPTAAAIAYGLD INEPTAAAIAYGLDRTGKGERNVLIFDLGG R I I D R T 4 1 1 1 0 0 1 1 0 3 1 0 0 0 1 0 1 0 1 0 0 0 16 0 1686.8941 P0DMV9;P0DMV8;P17066 P0DMV9 172 187 HSPA1B;HSPA1A;HSPA6 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2;3 1.7365E-35 208.95 By MS/MS By MS/MS By MS/MS 5.32 3.11 3 2 5 2 2 2 1 2 2 4 5 11 9 648460000 50888000 205700000 391870000 6045 501;582 6299 25616;25617;25618;25619;25620;25621;25622;25623;25624;25625;25626;25627;25628;25629;25630;25631;25632;25633;25634;25635;25636;25637;25638;25639;25640 21630;21631;21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642;21643;21644;21645;21646;21647;21648;21649;21650;21651;21652 21646 22 57157000 111530000 85556000 IIPEITAMK KLQLEETMPSPYGRRIIPEITAMKADASKK SPYGRRIIPEITAMKADASKKLLKKKKGDL R I I M K A 1 0 0 0 0 0 1 0 0 3 0 1 1 0 1 0 1 0 0 0 0 0 9 0 1014.5784 Q02880 Q02880 1242 1250 TOP2B DNA topoisomerase 2-beta yes yes 2 0.01547 85.212 By MS/MS 2 0.816 1 1 1 3 11275000 0 11275000 0 6046 1150 6300 25641;25642;25643 21653 21653 1 0 5279600 0 IIPGFMCQGGDFTR TGEKGFGYKGSCFHRIIPGFMCQGGDFTRH RIIPGFMCQGGDFTRHNGTGGKSIYGEKFE R I I T R H 0 1 0 1 1 1 0 3 0 2 0 0 1 2 1 0 1 0 0 0 0 0 14 0 1597.7381 P62937;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284 P62937 56 69 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D yes no 2 3.4671E-07 167.12 By MS/MS By MS/MS By MS/MS 7.73 1.14 2 2 5 1 1 5 3 3 67215000 37508000 8197700 21509000 6047 1053 6301;6302 25644;25645;25646;25647;25648;25649;25650;25651;25652;25653;25654 21654;21655;21656;21657;21658;21659 21659 509 5 33796000 3920600 5964200 IIPGGIYDADLNDEWVQR TLAGALASSSKEENRIIPGGIYDADLNDEW GGIYDADLNDEWVQRALHFAISEYNKATED R I I Q R A 1 1 1 3 0 1 1 2 0 3 1 0 0 0 1 0 0 1 1 1 0 0 18 0 2073.0167 P01036 P01036 29 46 CST4 Cystatin-S yes yes 2 2.5853E-17 184.31 By MS/MS 5.83 2.11 1 1 1 1 1 1 6 24783000 24783000 0 0 6048 372 6303 25655;25656;25657;25658;25659;25660 21660;21661;21662;21663;21664 21662 5 19132000 0 0 IIPGGIYNADLNDEWVQR TLAVALAWSPKEEDRIIPGGIYNADLNDEW GGIYNADLNDEWVQRALHFAISEYNKATKD R I I Q R A 1 1 2 2 0 1 1 2 0 3 1 0 0 0 1 0 0 1 1 1 0 0 18 0 2072.0327 P01037 P01037 29 46 CST1 Cystatin-SN yes yes 2 1.0738E-09 160.38 By MS/MS 7.2 2.32 1 1 1 1 1 5 9518600 9518600 0 0 6049 373 6304 25661;25662;25663;25664;25665 21665;21666;21667 21667 3 7421700 0 0 IIPLYSTLPPQQQQR KREVDDLGPEVGDIKIIPLYSTLPPQQQQR IIPLYSTLPPQQQQRIFEPPPPKKQNGAIG K I I Q R I 0 1 0 0 0 4 0 0 0 2 2 0 0 0 3 1 1 0 1 0 0 0 15 0 1780.9836 O43143 O43143 385 399 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.00028091 139.15 By MS/MS By MS/MS 2.8 0.748 2 2 1 1 4 42738000 0 8564300 34174000 6050 186 6305 25666;25667;25668;25669;25670 21668;21669;21670;21671;21672;21673 21668 6 0 3856600 6566800 IIPPQPMEGLGFLDALNSAPVPGIK PLNTTPNATKEIKVKIIPPQPMEGLGFLDA GFLDALNSAPVPGIKIKKKKKVLSPTAAKP K I I I K I 2 0 1 1 0 1 1 3 0 3 3 1 1 1 5 1 0 0 0 1 0 0 25 0 2573.3927 Q96QC0 Q96QC0 280 304 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 0.00010087 61.039 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 15619000 0 2410100 13209000 6051 1823 6306 25671;25672;25673;25674 21674;21675 21675 2 0 1085300 2747700 IIPRHLQLAIR LELAGNAARDNKKTRIIPRHLQLAIRNDEE KKTRIIPRHLQLAIRNDEELNKLLGKVTIA R I I I R N 1 2 0 0 0 1 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 0 11 1 1328.8405 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q16777;Q6FI13;Q93077;Q7L7L0;P04908 Q99878 79 89 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3 0.0025342 126.24 By MS/MS By MS/MS 8.25 0.433 3 1 1 3 58863000 0 25786000 33078000 6052 497;1399;1473;1740;574 6307 25675;25676;25677;25678 21676;21677;21678 21678 3 0 11732000 5412300 IIQEVEENPDLR MGPKRRQLTFREKSRIIQEVEENPDLRKGE KSRIIQEVEENPDLRKGEIARRFNIPPSTL R I I L R K 0 1 1 1 0 1 3 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1453.7413 P07199 P07199 16 27 CENPB Major centromere autoantigen B yes yes 2 0.010021 94.297 By MS/MS 3 0 1 1 1894900 0 1894900 0 6053 455 6308 25679 21679 21679 1 0 807780 0 IIQLLDDYPK PREDRATWKSNYFLKIIQLLDDYPKCFIVG NYFLKIIQLLDDYPKCFIVGADNVGSKQMQ K I I P K C 0 0 0 2 0 1 0 0 0 2 2 1 0 0 1 0 0 0 1 0 0 0 10 0 1216.6703 P05388;Q8NHW5 P05388 17 26 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 0.00022151 135.79 By MS/MS By MS/MS By MS/MS 7.14 1.88 1 3 1 2 1 2 4 538700000 9530000 156340000 372830000 6054 432 6309 25680;25681;25682;25683;25684;25685;25686 21680;21681;21682;21683;21684;21685;21686;21687 21684 8 12689000 66415000 59028000 IIQQGLIR APRASVPSVQIQGQRIIQQGLIRVANVPNT VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ R I I I R V 0 1 0 0 0 2 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 0 8 0 939.58655 Q86YP4 Q86YP4 286 293 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.00072305 125.86 By MS/MS 3 0 1 1 8625900 0 8625900 0 6055 1563 6310 25687 21688 21688 1 0 3677200 0 IIQTAQTTPVQTVTIVQQAPLGQHQLPIK PIPAIGHATLGTASRIIQTAQTTPVQTVTI IVQQAPLGQHQLPIKTVTQNGTHVASVPTA R I I I K T 2 0 0 0 0 7 0 1 1 4 2 1 0 0 3 0 5 0 0 3 0 0 29 0 3150.7765 Q01167 Q01167 545 573 FOXK2 Forkhead box protein K2 yes yes 3 3.7842E-15 89.565 By MS/MS 3 0 1 1 5183900 0 5183900 0 6056 1132 6311 25688 21689 21689 1 0 2209900 0 IIQTPGLWESENQNK TCDGVQCAFEELVEKIIQTPGLWESENQNK IIQTPGLWESENQNKGVKLSHREEGQGGGA K I I N K G 0 0 2 0 0 2 2 1 0 2 1 1 0 0 1 1 1 1 0 0 0 0 15 0 1755.8792 Q9NP72 Q9NP72 169 183 RAB18 Ras-related protein Rab-18 yes yes 2 3.7116E-05 160.18 By MS/MS 7 0 1 1 6333700 0 0 6333700 6057 2019 6312 25689 21690 21690 1 0 0 1123900 IISAISELLER EDDFWADVSTLHVQKIISAISELLERLKSY HVQKIISAISELLERLKSYGEDGTAAKHLF K I I E R L 1 1 0 0 0 0 2 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1242.7184 Q9NU22 Q9NU22 4574 4584 MDN1 Midasin yes yes 2 0.0011948 112.36 By MS/MS 1 0 1 1 4360200 0 0 4360200 6058 2056 6313 25690 21691 21691 1 0 0 939470 IISDNLTYCK RCREWYGWHFPELGKIISDNLTYCKCLQKV PELGKIISDNLTYCKCLQKVGDRKNYASAK K I I C K C 0 0 1 1 1 0 0 0 0 2 1 1 0 0 0 1 1 0 1 0 0 0 10 0 1225.6013 Q9Y2X3 Q9Y2X3 197 206 NOP58 Nucleolar protein 58 yes yes 2 0.010545 88.37 By MS/MS 3 0 1 1 16133000 0 0 16133000 6059 2254 6314 25691 21692 21692 1 0 0 3129000 IISLDAWR PEKFPAIERCCTRYKIISLDAWRVDINKNK RCCTRYKIISLDAWRVDINKNKITRIDQKA K I I W R V 1 1 0 1 0 0 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 0 8 0 972.53927 Q8IZH2 Q8IZH2 631 638 XRN1 5-3 exoribonuclease 1 yes yes 2 0.0012844 117.93 By MS/MS 1 0 1 1 4736800 0 0 4736800 6060 1595 6315 25692 21693 21693 1 0 0 1020600 IISLETYNLLR YVRRRLTAEDLFEARIISLETYNLLREGTR FEARIISLETYNLLREGTRSLREALEAESA R I I L R E 0 1 1 0 0 0 1 0 0 2 3 0 0 0 0 1 1 0 1 0 0 0 11 0 1333.7606 Q15149 Q15149 3794 3804 PLEC Plectin yes yes 2 3.4409E-05 147.51 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 57496000 588820 25303000 31604000 6061 1348 6316 25693;25694;25695;25696;25697;25698 21694;21695;21696;21697 21697 4 588820 12134000 6856700 IISNASCTTNCLAPLAK FVMGVNHEKYDNSLKIISNASCTTNCLAPL SNASCTTNCLAPLAKVIHDNFGIVEGLMTT K I I A K V 3 0 2 0 2 0 0 0 0 2 2 1 0 0 1 2 2 0 0 0 0 0 17 0 1832.9125 P04406 P04406 146 162 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 1.0239E-05 146.36 By MS/MS 6 0 1 1 5277200 5277200 0 0 6062 415 6317 25699 21698 21698 1 7026600 0 0 IISNLFLGR ATQNAPRLLQDSQKKIISNLFLGRAGSATV QDSQKKIISNLFLGRAGSATVLSGSIAGLE K I I G R A 0 1 1 0 0 0 0 1 0 2 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1031.6128 Q92614 Q92614 969 977 MYO18A Unconventional myosin-XVIIIa yes yes 2 9.5367E-05 143.11 By MS/MS 1 0 1 1 4786400 0 4786400 0 6063 1710 6318 25700 21699 21699 1 0 2339500 0 IISNVPADSLIR FLPHKYDVKLQNEDKIISNVPADSLIRTER EDKIISNVPADSLIRTERPPNKEIVRYFIR K I I I R T 1 1 1 1 0 0 0 0 0 3 1 0 0 0 1 2 0 0 0 1 0 0 12 0 1296.7402 Q9UIG0 Q9UIG0 232 243 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0010576 117.52 By MS/MS By MS/MS 2.5 1.71 2 2 1 1 2 4 82039000 0 12625000 69414000 6064 2164 6319 25701;25702;25703;25704;25705;25706 21700;21701;21702;21703 21700 4 0 5928700 14884000 IISSDRDLLAVVFYGTEK FDMSIQCIQSVYISKIISSDRDLLAVVFYG SDRDLLAVVFYGTEKDKNSVNFKNIYVLQE K I I E K D 1 1 0 2 0 0 1 1 0 2 2 1 0 1 0 2 1 0 1 2 0 0 18 1 2025.0783 P12956 P12956 75 92 XRCC6 X-ray repair cross-complementing protein 6 yes yes 3 0.00031656 83.253 By MS/MS By MS/MS 3 0 2 1 1 30015000 0 3800100 26215000 6065 541 6320 25707;25708 21704;21705 21705 2 0 1620000 5084500 IISSIEQKEENK VAYKNVIGARRASWRIISSIEQKEENKGGE SWRIISSIEQKEENKGGEDKLKMIREYRQM R I I N K G 0 0 1 0 0 1 3 0 0 3 0 2 0 0 0 2 0 0 0 0 0 0 12 1 1416.746 P62258 P62258 62 73 YWHAE 14-3-3 protein epsilon yes yes 2;3 1.0956E-44 222 By MS/MS By MS/MS 6 0 4 2 2 62572000 0 8409700 54162000 6066 1011 6321 25709;25710;25711;25712 21706;21707;21708 21708 3 0 2911100 8103200 IISSIEQKEENKGGEDK VAYKNVIGARRASWRIISSIEQKEENKGGE SSIEQKEENKGGEDKLKMIREYRQMVETEL R I I D K L 0 0 1 1 0 1 4 2 0 3 0 3 0 0 0 2 0 0 0 0 0 0 17 2 1902.9535 P62258 P62258 62 78 YWHAE 14-3-3 protein epsilon yes yes 3;4 2.4457E-06 132.84 By matching By MS/MS 6.25 0.433 3 1 1 3 16873000 0 2066700 14807000 6067 1011 6322 25713;25714;25715;25716 21709;21710 21709 2 0 715430 2258400 IISTTTLNK GFGFGGSVSGSSSSKIISTTTLNKRR____ GSSSSKIISTTTLNKRR_____________ K I I N K R 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 3 0 0 0 0 0 9 0 989.57571 CON__P19013;P19013 CON__P19013 584 592 KRT4 Keratin, type II cytoskeletal 4 yes no 2 0.019656 82.452 By MS/MS By matching 1 0 2 1 1 54813000 52303000 2510400 0 + 6068 61 6323 25717;25718 21711 21711 1 52303000 1227100 0 IISVFVDALPHVPEHR DSIEVSRNVEEIVVKIISVFVDALPHVPEH ISVFVDALPHVPEHRRLPILVQLVDTLGAE K I I H R R 1 1 0 1 0 0 1 0 2 2 1 0 0 1 2 1 0 0 0 3 0 0 16 0 1827.9996 Q9H583 Q9H583 1379 1394 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3;4 0.00045657 87.519 By MS/MS 1.33 0.471 2 1 3 14969000 0 0 14969000 6069 1984 6324 25719;25720;25721 21712;21713 21712 2 0 0 3239900 IITDVIGNPEEERR DFIQEWLRSQRRDLKIITDVIGNPEEERRA KIITDVIGNPEEERRAAFYHQPWAQEAVGR K I I R R A 0 2 1 1 0 0 3 1 0 3 0 0 0 0 1 0 1 0 0 1 0 0 14 1 1639.8529 Q92925 Q92925 481 494 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 2;3 3.8091E-05 162.26 By matching By MS/MS 3.2 0.748 1 2 2 1 4 29768000 0 2019500 27749000 6070 1732 6325 25722;25723;25724;25725;25726 21714;21715 21715 2 0 909430 4820200 IITHPNFNGNTLDNDIMLIK IDVLEGNEQFINAAKIITHPNFNGNTLDND NFNGNTLDNDIMLIKLSSPATLNSRVATVS K I I I K L 0 0 4 2 0 0 0 1 1 4 2 1 1 1 1 0 2 0 0 0 0 0 20 0 2282.1729 CON__P00761 CON__P00761 78 97 yes yes 2;3;4 5.1813E-141 278.15 By MS/MS By MS/MS By MS/MS 5.52 2.84 7 4 5 7 5 7 5 6 8 4 28 20 10 3794800000 2547600000 1085700000 161570000 + 6071 32 6326;6327 25727;25728;25729;25730;25731;25732;25733;25734;25735;25736;25737;25738;25739;25740;25741;25742;25743;25744;25745;25746;25747;25748;25749;25750;25751;25752;25753;25754;25755;25756;25757;25758;25759;25760;25761;25762;25763;25764;25765;25766;25767;25768;25769;25770;25771;25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782;25783;25784 21716;21717;21718;21719;21720;21721;21722;21723;21724;21725;21726;21727;21728;21729;21730;21731;21732;21733;21734;21735;21736;21737;21738;21739;21740;21741;21742;21743;21744;21745;21746;21747;21748;21749;21750;21751;21752;21753;21754;21755;21756;21757;21758;21759;21760;21761;21762;21763;21764;21765;21766;21767;21768;21769;21770;21771;21772;21773;21774;21775;21776;21777;21778;21779;21780;21781;21782 21740 7 67 2317100000 539850000 39327000 IITHPNFNGNTLDNDIMLIKLSSPATLNSR IDVLEGNEQFINAAKIITHPNFNGNTLDND IMLIKLSSPATLNSRVATVSLPRSCAAAGT K I I S R V 1 1 5 2 0 0 0 1 1 4 4 1 1 1 2 3 3 0 0 0 0 0 30 1 3308.7187 CON__P00761 CON__P00761 78 107 yes yes 4 1.7271E-12 75.275 By MS/MS 8 0 1 1 3349200 3349200 0 0 + 6072 32 6328 25785 21783 21783 1 2875400 0 0 IITITGTQDQIQNAQYLLQNSVK ASIKIDEPLEGSEDRIITITGTQDQIQNAQ DQIQNAQYLLQNSVKQYSGKFF________ R I I V K Q 1 0 2 1 0 5 0 1 0 4 2 1 0 0 0 1 3 0 1 1 0 0 23 0 2588.381 P61978 P61978 434 456 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 0 400.82 By MS/MS By MS/MS 4.86 2.22 1 2 4 5 1 3 2 3 1 9 13 3875900000 0 2823900000 1052000000 6073 1002 6329 25786;25787;25788;25789;25790;25791;25792;25793;25794;25795;25796;25797;25798;25799;25800;25801;25802;25803;25804;25805;25806;25807 21784;21785;21786;21787;21788;21789;21790;21791;21792;21793;21794;21795;21796;21797;21798;21799;21800;21801;21802;21803;21804;21805 21788 22 0 942590000 181490000 IITLAGPTNAIFK SGARINISEGNCPERIITLAGPTNAIFKAF ERIITLAGPTNAIFKAFAMIIDKLEEDISS R I I F K A 2 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 2 0 0 0 0 0 13 0 1357.7969 Q15366 Q15366 58 70 PCBP2 Poly(rC)-binding protein 2 yes yes 2 0.00027023 132.88 By MS/MS By MS/MS By MS/MS 7.38 1.69 2 3 2 2 2 2 2 6 5 573220000 17045000 246360000 309810000 6074 1357 6330 25808;25809;25810;25811;25812;25813;25814;25815;25816;25817;25818;25819;25820 21806;21807;21808;21809;21810;21811;21812;21813;21814;21815;21816;21817;21818 21809 13 23560000 133860000 68048000 IITLEEGDIILTGTPK SMIFSIPYIISYVSKIITLEEGDIILTGTP ITLEEGDIILTGTPKGVGPVKENDEIEAGI K I I P K G 0 0 0 1 0 0 2 2 0 4 2 1 0 0 1 0 3 0 0 0 0 0 16 0 1711.9608 Q6P587 Q6P587 179 194 FAHD1 Acylpyruvase FAHD1, mitochondrial yes yes 2 5.3825E-05 144.57 By matching By MS/MS 7 0 2 1 1 7438700 0 1003300 6435400 6075 1491 6331 25821;25822 21819 21819 1 0 576100 1141900 IITLTGPTNAIFK SGARINISEGNCPERIITLTGPTNAIFKAF ERIITLTGPTNAIFKAFAMIIDKLEEDINS R I I F K A 1 0 1 0 0 0 0 1 0 3 1 1 0 1 1 0 3 0 0 0 0 0 13 0 1387.8075 Q15365 Q15365 58 70 PCBP1 Poly(rC)-binding protein 1 yes yes 2 7.8153E-09 174.41 By MS/MS By MS/MS By MS/MS 5.83 2.48 1 1 1 2 3 2 2 1 7 4 213450000 5301000 106890000 101250000 6076 1356 6332 25823;25824;25825;25826;25827;25828;25829;25830;25831;25832;25833;25834 21820;21821;21822;21823;21824;21825;21826;21827;21828;21829;21830 21824 11 7058400 82848000 28397000 IIVDELK AATGPSIKIWDLEGKIIVDELKQEVISTSS KIWDLEGKIIVDELKQEVISTSSKAEPPQC K I I L K Q 0 0 0 1 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 P63244 P63244 265 271 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 0.031954 90.986 By matching By MS/MS 6 0 2 1 1 35747000 2461500 0 33286000 6077 1068 6333 25835;25836 21831 21831 1 3277500 0 4979900 IIVDELKQEVISTSSK AATGPSIKIWDLEGKIIVDELKQEVISTSS IVDELKQEVISTSSKAEPPQCTSLAWSADG K I I S K A 0 0 0 1 0 1 2 0 0 3 1 2 0 0 0 3 1 0 0 2 0 0 16 1 1787.988 P63244 P63244 265 280 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2;3 2.6919E-46 225.92 By MS/MS By MS/MS 6.57 1.5 1 4 1 1 3 4 219150000 0 70056000 149090000 6078 1068 6334 25837;25838;25839;25840;25841;25842;25843 21832;21833;21834;21835;21836 21832 5 0 23827000 27503000 IIVENLFYPVTLDVLHQIFSK VDAGMAMAGQSPVLRIIVENLFYPVTLDVL FYPVTLDVLHQIFSKFGTVLKIITFTKNNQ R I I S K F 0 0 1 1 0 1 1 0 1 3 3 1 0 2 1 1 1 0 1 3 0 0 21 0 2487.3777 P26599 P26599 186 206 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 3 8.2302E-06 78.987 By MS/MS 3 0.816 1 1 1 3 19442000 0 0 19442000 6079 671 6335 25844;25845;25846 21837;21838;21839;21840 21837 4 0 0 3621800 IIVPLNNR SSEDPNEDIVERNIRIIVPLNNRENISDPT IVERNIRIIVPLNNRENISDPTSPLRTRFV R I I N R E 0 1 2 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 0 1 0 0 8 0 937.5709 P01591 P01591 62 69 IGJ Immunoglobulin J chain yes yes 2 0.017698 86.113 By MS/MS 5.5 4.5 1 1 2 8113300 8113300 0 0 6080 376 6336 25847;25848 21841;21842 21842 2 10353000 0 0 IIYFADAELLKDVLK AGPAVRHKCLRAILRIIYFADAELLKDVLK IIYFADAELLKDVLKNHAVSSHIASMLSSQ R I I L K N 2 0 0 2 0 0 1 0 0 2 3 2 0 1 0 0 0 0 1 1 0 0 15 1 1749.9917 Q14669 Q14669 865 879 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.04216 45.084 By MS/MS 1 0 1 1 1534100 0 0 1534100 6081 1308 6337 25849 21843 21843 1 0 0 330550 IIYGGSVTGATCK WLKSNVSDAVAQSTRIIYGGSVTGATCKEL TRIIYGGSVTGATCKELASQPDVDGFLVGG R I I C K E 1 0 0 0 1 0 0 3 0 2 0 1 0 0 0 1 2 0 1 1 0 0 13 0 1325.6649 P60174 P60174 244 256 TPI1 Triosephosphate isomerase yes yes 2 0.0077834 92.611 By MS/MS By matching 7 0 2 1 1 18780000 7843100 0 10937000 6082 962 6338 25850;25851 21844 21844 1 16903000 0 1940700 IIYIAPMR KHINMDGTINVDDFKIIYIAPMRSLVQEMV INVDDFKIIYIAPMRSLVQEMVGSFGKRLA K I I M R S 1 1 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 1 0 0 0 8 0 975.55756 O75643 O75643 538 545 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.022182 89.903 By MS/MS By MS/MS 1 0 2 1 1 7563600 0 7563600 0 6083 277 6339;6340 25852;25853 21845;21846 21846 108 2 0 3697000 0 IIYVPLPDAATR DRIDKALMRPGRIDRIIYVPLPDAATRREI IDRIIYVPLPDAATRREIFKLQFHSMPVSN R I I T R R 2 1 0 1 0 0 0 0 0 2 1 0 0 0 2 0 1 0 1 1 0 0 12 0 1327.75 Q8NB90 Q8NB90 791 802 SPATA5 Spermatogenesis-associated protein 5 yes yes 2 0.046044 74.162 By MS/MS 2 0 1 1 18518000 0 0 18518000 6084 1624 6341 25854 21847 21847 1 0 0 4184700 IKAIPQLQGYLR RKIDQKAVDSQILPKIKAIPQLQGYLRSVF LPKIKAIPQLQGYLRSVFALTNGIYPHKLV K I K L R S 1 1 0 0 0 2 0 1 0 2 2 1 0 0 1 0 0 0 1 0 0 0 12 1 1398.8347 Q02878 Q02878 261 272 RPL6 60S ribosomal protein L6 yes yes 3 0.016806 67.385 By MS/MS 6 0 1 1 4329700 0 4329700 0 6085 1149 6342 25855 21848 21848 1 0 1498800 0 IKAQDEAFALQDVPLSSVVR VAGLVTLKHVYEIARIKAQDEAFALQDVPL EAFALQDVPLSSVVRSIIGSARSLGIRVVK R I K V R S 3 1 0 2 0 2 1 0 0 1 2 1 0 1 1 2 0 0 0 3 0 0 20 1 2185.1743 Q9Y3B7 Q9Y3B7 123 142 MRPL11 39S ribosomal protein L11, mitochondrial yes yes 3 0.0081193 47.75 By MS/MS 7 0 1 1 3129600 0 3129600 0 6086 2266 6343 25856 21849 21849 1 0 1797000 0 IKDPDASKPEDWDER SGSLEDDWDFLPPKKIKDPDASKPEDWDER IKDPDASKPEDWDERAKIDDPTDSKPEDWD K I K E R A 1 1 0 4 0 0 2 0 0 1 0 2 0 0 2 1 0 1 0 0 0 0 15 2 1799.8326 P27797 P27797 208 222 CALR Calreticulin yes yes 4 0.028425 51.265 By MS/MS 4 0 1 1 21934000 0 0 21934000 6087 682 6344 25857 21850 21850 1 0 0 3582500 IKEDEDDKTVLDLAVVLFETATLR EINPRHPLIRDMLRRIKEDEDDKTVLDLAV VLDLAVVLFETATLRSGYLLPDTKAYGDRI R I K L R S 2 1 0 4 0 0 3 0 0 1 4 2 0 1 0 0 3 0 0 3 0 0 24 2 2732.4484 P14625 P14625 701 724 HSP90B1 Endoplasmin yes yes 3;4 6.1234E-21 130.65 By MS/MS 2 0 2 2 7503200 0 0 7503200 6088 560 6345 25858;25859 21851;21852 21851 2 0 0 1695600 IKELEQEREDQK QREYKKKKALKKAQRIKELEQEREDQKVKW AQRIKELEQEREDQKVKWQQFNNRAYSKNK R I K Q K V 0 1 0 1 0 2 4 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 12 2 1543.7842 O75940 O75940 164 175 SMNDC1 Survival of motor neuron-related-splicing factor 30 yes yes 3 0.0010236 100.04 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 10051000 0 3173200 6877500 6089 292 6346 25860;25861;25862 21853;21854 21854 1 0 1029900 1028900 IKEWYEK KVRALEESNYELEGKIKEWYEKHGNSHQGE SNYELEGKIKEWYEKHGNSHQGEPRDYSKY K I K E K H 0 0 0 0 0 0 2 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 7 1 994.51238 P13645;CON__P13645;CON__P02535-1 P13645 178 184 KRT10 Keratin, type I cytoskeletal 10 no no 1;2 0.00019846 152.63 By MS/MS By MS/MS 4.44 2.79 1 2 1 1 2 1 1 8 1 852560000 705380000 0 147180000 + 6090 56;36 6347 25863;25864;25865;25866;25867;25868;25869;25870;25871 21855;21856;21857;21858;21859 21856 5 916230000 0 20529000 IKFEMEQNLR LLDIDNTRMTLDDFRIKFEMEQNLRQGVDA LDDFRIKFEMEQNLRQGVDADINGLRQVLD R I K L R Q 0 1 1 0 0 1 2 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 10 1 1306.6704 P35527;CON__P35527 P35527 241 250 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 2.2218E-15 176.79 By MS/MS By MS/MS By MS/MS 5.48 2.86 8 7 10 11 7 9 8 7 7 10 38 17 29 9431700000 6322600000 254680000 2854400000 + 6091 750 6348;6349 25872;25873;25874;25875;25876;25877;25878;25879;25880;25881;25882;25883;25884;25885;25886;25887;25888;25889;25890;25891;25892;25893;25894;25895;25896;25897;25898;25899;25900;25901;25902;25903;25904;25905;25906;25907;25908;25909;25910;25911;25912;25913;25914;25915;25916;25917;25918;25919;25920;25921;25922;25923;25924;25925;25926;25927;25928;25929;25930;25931;25932;25933;25934;25935;25936;25937;25938;25939;25940;25941;25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953;25954;25955 21860;21861;21862;21863;21864;21865;21866;21867;21868;21869;21870;21871;21872;21873;21874;21875;21876;21877;21878;21879;21880;21881;21882;21883;21884;21885;21886;21887;21888;21889;21890;21891;21892;21893;21894;21895;21896;21897;21898;21899;21900;21901;21902;21903;21904;21905;21906;21907;21908;21909;21910;21911;21912;21913;21914;21915;21916;21917;21918;21919;21920;21921;21922;21923;21924;21925;21926;21927;21928;21929;21930;21931;21932;21933;21934;21935;21936;21937;21938;21939;21940;21941;21942;21943;21944;21945;21946;21947;21948;21949;21950;21951;21952;21953;21954;21955;21956;21957;21958;21959;21960;21961;21962;21963;21964;21965 21951 336 105 5860900000 201010000 648150000 IKGEHPGLSIGDVAK PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ K I K A K K 1 0 0 1 0 0 1 3 1 2 1 2 0 0 1 1 0 0 0 1 0 0 15 1 1519.8358 P09429;B2RPK0 P09429 113 127 HMGB1;HMGB1P1 High mobility group protein B1;Putative high mobility group protein B1-like 1 yes no 2;3 1.2567E-12 171.11 By MS/MS By MS/MS 6.14 0.915 1 2 5 6 8 6 1950200000 0 231840000 1718400000 6092 484 6350 25956;25957;25958;25959;25960;25961;25962;25963;25964;25965;25966;25967;25968;25969 21966;21967;21968;21969;21970;21971;21972;21973;21974;21975;21976 21971 10 0 98395000 274250000 IKLEGIITR IRQLQQENRQLLNERIKLEGIITRVETYLN QLLNERIKLEGIITRVETYLNENLRKRLDQ R I K T R V 0 1 0 0 0 0 1 1 0 3 1 1 0 0 0 0 1 0 0 0 0 0 9 1 1041.6546 Q9UQE7 Q9UQE7 819 827 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.019031 103.87 By matching By MS/MS 1.33 0.471 2 1 1 2 58359000 0 1477500 56882000 6093 2222 6351 25970;25971;25972 21977;21978 21978 2 0 722170 12580000 IKNENTEGSPQEDGVELEGLK TIEMKAEAEKKNKKKIKNENTEGSPQEDGV EGSPQEDGVELEGLKQRLEKKQKREPGTKT K I K L K Q 0 0 2 1 0 1 5 3 0 1 2 2 0 0 1 1 1 0 0 1 0 0 21 1 2285.1023 P11388 P11388 1239 1259 TOP2A DNA topoisomerase 2-alpha yes yes 3 1.5737E-06 94.234 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 121290000 0 17418000 103870000 6094 524 6352 25973;25974;25975;25976;25977 21979;21980;21981;21982;21983 21981 5 0 8186600 22561000 IKNYILMR YSDSAVLKLAEPYGKIKNYILMRMKSQAFI LAEPYGKIKNYILMRMKSQAFIEMETREDA K I K M R M 0 1 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 1 0 0 0 8 1 1049.6056 P43243 P43243 523 530 MATR3 Matrin-3 yes yes 2 0.036357 100.74 By MS/MS 3 0.816 1 1 1 3 18141000 0 18141000 0 6095 812 6353 25978;25979;25980 21984 21984 1 0 7631700 0 IKPAATSHVEGSGGVSAK PASFRKSTYWMKMRRIKPAATSHVEGSGGV AATSHVEGSGGVSAKGKRKPRQEEDEDYRE R I K A K G 3 0 0 0 0 0 1 3 1 1 0 2 0 0 1 3 1 0 0 2 0 0 18 1 1694.8951 Q96ME7 Q96ME7 83 100 ZNF512 Zinc finger protein 512 yes yes 3;4 0.00036658 78.78 By matching By MS/MS By MS/MS 4.26 2.24 2 3 3 3 2 3 1 1 1 1 5 13 96861000 693310 11377000 84791000 6096 1809 6354 25981;25982;25983;25984;25985;25986;25987;25988;25989;25990;25991;25992;25993;25994;25995;25996;25997;25998;25999 21985;21986;21987;21988;21989;21990;21991;21992;21993;21994;21995 21990 11 835360 3958200 16011000 IKPPTPAVSNVR IVEVLPNQPVKLVPKIKPPTPAVSNVRSVA VPKIKPPTPAVSNVRSVASRTLVRDLHLSI K I K V R S 1 1 1 0 0 0 0 0 0 1 0 1 0 0 3 1 1 0 0 2 0 0 12 1 1277.7456 A6NHR9 A6NHR9 1495 1506 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.0012823 101.89 By MS/MS 1 0 1 1 24957000 0 0 24957000 6097 15 6355 26000 21996 21996 1 0 0 5377400 IKPSESNVTILGR IVCWKPGKMEDDIDKIKPSESNVTILGRFD DKIKPSESNVTILGRFDYSQCDIWYMRFSM K I K G R F 0 1 1 0 0 0 1 1 0 2 1 1 0 0 1 2 1 0 0 1 0 0 13 1 1412.7987 O75530 O75530 343 355 EED Polycomb protein EED yes yes 3 0.00020702 115.92 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 35991000 0 10571000 25420000 6098 268 6356 26001;26002;26003 21997;21998 21998 2 0 3508100 4027400 IKPSQNTETLELLLK VIEGNNCTFVRDLSRIKPSQNTETLELLLK IKPSQNTETLELLLKEFFEYFGNFAFDKNS R I K L K E 0 0 1 0 0 1 2 0 0 1 4 2 0 0 1 1 2 0 0 0 0 0 15 1 1725.9877 Q9NVV4 Q9NVV4 428 442 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2;3 0.00011842 155.86 By MS/MS By MS/MS 3.6 0.49 2 3 1 4 67626000 0 10339000 57287000 6099 2072 6357 26004;26005;26006;26007;26008 21999;22000;22001 21999 3 0 3431200 9914000 IKSDHPGISITDLSK PMSAYMLWLNASREKIKSDHPGISITDLSK IKSDHPGISITDLSKKAGEIWKGMSKEKKE K I K S K K 0 0 0 2 0 0 0 1 1 3 1 2 0 0 1 3 1 0 0 0 0 0 15 1 1609.8675 Q08945 Q08945 565 579 SSRP1 FACT complex subunit SSRP1 yes yes 3 0.00037835 93.495 By MS/MS By MS/MS 3.38 1.8 1 2 2 1 1 1 3 5 105930000 0 39775000 66156000 6100 1186 6358 26009;26010;26011;26012;26013;26014;26015;26016 22002;22003;22004;22005 22002 4 0 17297000 12834000 IKSEHPGLSIGDTAK PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ K I K A K K 1 0 0 1 0 0 1 2 1 2 1 2 0 0 1 2 1 0 0 0 0 0 15 1 1551.8257 P26583 P26583 113 127 HMGB2 High mobility group protein B2 yes yes 2;3 4.8082E-45 225.32 By MS/MS By MS/MS 6.11 0.994 1 1 3 4 4 5 706760000 0 215180000 491580000 6101 670 6359 26017;26018;26019;26020;26021;26022;26023;26024;26025 22006;22007;22008;22009;22010;22011;22012 22011 7 0 111780000 81583000 IKSEHPGLSIGDTAKK PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP K I K K K L 1 0 0 1 0 0 1 2 1 2 1 3 0 0 1 2 1 0 0 0 0 0 16 2 1679.9206 P26583 P26583 113 128 HMGB2 High mobility group protein B2 yes yes 3;4 0.01118 56.121 By MS/MS By MS/MS 6.6 0.49 2 3 3 2 26283000 0 15944000 10340000 6102 670 6360 26026;26027;26028;26029;26030 22013;22014;22015;22016 22013 4 0 8040500 1774100 IKYPENFFLLR GKQSLETICLLLAYKIKYPENFFLLRGNHE LAYKIKYPENFFLLRGNHECASINRIYGFY K I K L R G 0 1 1 0 0 0 1 0 0 1 2 1 0 2 1 0 0 0 1 0 0 0 11 1 1438.7973 P62140;P62136;P36873 P62136 112 122 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2;3 6.6896E-05 133.42 By MS/MS By MS/MS 6.44 1.26 2 4 1 1 1 3 6 136290000 0 28345000 107940000 6103 1006;1007;763 6361 26031;26032;26033;26034;26035;26036;26037;26038;26039 22017;22018;22019;22020;22021;22022 22020 6 0 9694700 16361000 ILAAIIMK NTLTNSFQPSLLGRKILAAIIMKKDSEDMG PSLLGRKILAAIIMKKDSEDMGVVVSLGTG K I L M K K 2 0 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 0 8 0 871.5565 P55265 P55265 868 875 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.0039561 103.29 By MS/MS By MS/MS 2 0 2 1 1 8994300 0 1597300 7397000 6104 941 6362 26040;26041 22023;22024 22024 2 0 719290 1671600 ILAAILHLGNLK KVIGFKPEEIQTVYKILAAILHLGNLKFVV VYKILAAILHLGNLKFVVDGDTPLIENGKV K I L L K F 2 0 1 0 0 0 0 1 1 2 4 1 0 0 0 0 0 0 0 0 0 0 12 0 1274.8074 O94832 O94832 270 281 MYO1D Unconventional myosin-Id yes yes 2;3 0.00030737 129.72 By MS/MS 1.67 0.471 1 2 3 19194000 0 0 19194000 6105 299 6363 26042;26043;26044 22025;22026 22026 2 0 0 4325000 ILADLEDYLNELWEDKEGK KSIVDKEGVPRFYIRILADLEDYLNELWED LEDYLNELWEDKEGKKKMNKNNAKALSTLR R I L G K K 1 0 1 3 0 0 4 1 0 1 4 2 0 0 0 0 0 1 1 0 0 0 19 1 2292.1162 Q99613;B5ME19 Q99613 109 127 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 3 3.2851E-06 100.77 By MS/MS 2 0 1 1 2752100 0 0 2752100 6106 21 6364 26045 22027 22027 1 0 0 621920 ILADPSDDTK DVAYRCGYFDEEMNRILADPSDDTKGFFDP EEMNRILADPSDDTKGFFDPNTHENLTYLQ R I L T K G 1 0 0 3 0 0 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 10 0 1073.5241 P58107 P58107 1717 1726 EPPK1 Epiplakin yes yes 2 0.041934 72.643 By MS/MS 1 0 1 1 0 0 0 0 6107 958 6365 26046 22028 22028 1 0 0 0 ILAGDKNYITMDELRR TADTDTADQVMASFKILAGDKNYITMDELR LAGDKNYITMDELRRELPPDQAEYCIARMA K I L R R E 1 2 1 2 0 0 1 1 0 2 2 1 1 0 0 0 1 0 1 0 0 0 16 2 1906.9935 P12814 P12814 835 850 ACTN1 Alpha-actinin-1 yes yes 4 8.0706E-06 131.24 By MS/MS 2 0 1 1 8080600 0 8080600 0 6108 540 6366 26047 22029 22029 1 0 3638800 0 ILAGLGFDPEMQNRPTQK LRATGAAAAEAKARRILAGLGFDPEMQNRP GLGFDPEMQNRPTQKFSGGWRMRVSLARAL R I L Q K F 1 1 1 1 0 2 1 2 0 1 2 1 1 1 2 0 1 0 0 0 0 0 18 1 2014.0306 Q8NE71 Q8NE71 434 451 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2;3 3.8088E-09 162.32 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 77001000 0 38659000 38342000 6109 1638 6367 26048;26049;26050;26051;26052 22030;22031 22031 2 0 17587000 7896900 ILAHNNFVGR KEAKDTKTADEVPLKILAHNNFVGRLIGKE EVPLKILAHNNFVGRLIGKEGRNLKKVEQD K I L G R L 1 1 2 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 0 0 10 0 1139.62 Q9NZI8;O00425 Q9NZI8 281 290 IGF2BP1;IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3 no no 2 3.4371E-22 187.55 By matching By MS/MS By MS/MS 4 0.816 3 3 3 2 2 5 156030000 38355000 38764000 78909000 6110 2104;121 6368 26053;26054;26055;26056;26057;26058;26059;26060;26061 22032;22033;22034;22035;22036 22032 4 43200000 14721000 13098000 ILAIGLINEALDEGDAQK CVDHVNLVVQEEHERILAIGLINEALDEGD IGLINEALDEGDAQKTLQALQIPAAKLEGV R I L Q K T 3 0 1 2 0 1 2 2 0 3 3 1 0 0 0 0 0 0 0 0 0 0 18 0 1882.0048 P46940 P46940 539 556 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2;3 1.9621E-08 136.93 By MS/MS 1 0 2 2 10968000 0 0 10968000 6111 835 6369 26062;26063 22037;22038 22037 2 0 0 2363200 ILALEADMTK NAPALLELVREKEERILALEADMTKWEQKY EKEERILALEADMTKWEQKYLEESTIRHFA R I L T K W 2 0 0 1 0 0 1 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1103.5896 Q8IY63;Q4VCS5 Q8IY63 677 686 AMOTL1;AMOT Angiomotin-like protein 1;Angiomotin yes no 2 0.070532 61.65 By MS/MS 1.5 0.5 1 1 2 9153700 0 0 9153700 6112 1589 6370 26064;26065 22039 22039 0 0 0 2027000 ILALLDALSTVHSQK DRRRPAVIREPHERKILALLDALSTVHSQK ILALLDALSTVHSQKMKKAKEQRHLHNKEH K I L Q K M 2 0 0 1 0 1 0 0 1 1 4 1 0 0 0 2 1 0 0 1 0 0 15 0 1607.9247 Q14692 Q14692 1207 1221 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.00031712 92.935 By MS/MS 2 0.816 1 1 1 3 8977200 0 0 8977200 6113 1315 6371 26066;26067;26068 22040 22040 1 0 0 1945800 ILAMNHLK TSLMLSLNHPLAPVRILAMNHLKKIMKTSK HPLAPVRILAMNHLKKIMKTSKEGVDESFI R I L L K K 1 0 1 0 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 938.53716 Q9H583 Q9H583 496 503 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.06444 69.383 By MS/MS 1 0 1 1 15235000 0 0 15235000 6114 1984 6372 26069 22041 22041 1 0 0 3282600 ILAPYLEMK EQIEVFANKLGEQWKILAPYLEMKDSEIRQ LGEQWKILAPYLEMKDSEIRQIECDSEDMK K I L M K D 1 0 0 0 0 0 1 0 0 1 2 1 1 0 1 0 0 0 1 0 0 0 9 0 1076.594 Q96FV9 Q96FV9 587 595 THOC1 THO complex subunit 1 yes yes 2 0.002059 105.57 By MS/MS 3 0 1 1 6989200 0 6989200 0 6115 1783 6373 26070 22042 22042 1 0 2979500 0 ILAQATSDLVNAIK FSSMGDAGEMVRQARILAQATSDLVNAIKA RILAQATSDLVNAIKADAEGESDLENSRKL R I L I K A 3 0 1 1 0 1 0 0 0 2 2 1 0 0 0 1 1 0 0 1 0 0 14 0 1455.8297 Q9Y490 Q9Y490 828 841 TLN1 Talin-1 yes yes 2 0.0036806 93.258 By MS/MS 1 0 1 1 2839300 0 2839300 0 6116 2284 6374 26071 22043 22043 1 0 1387800 0 ILAQDVAQLK EEAKRHLNDLLEDRKILAQDVAQLKEKKES LEDRKILAQDVAQLKEKKESGENPPPKLRR K I L L K E 2 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1097.6445 O95239 O95239 773 782 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 0.0012473 103.56 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 27002000 0 12524000 14477000 6117 314 6375 26072;26073;26074;26075;26076 22044;22045;22046 22046 3 0 5254600 3119400 ILAQVVGDVDTSLPR SQRSFVEFILEPLYKILAQVVGDVDTSLPR ILAQVVGDVDTSLPRTLDELGIHLTKEELK K I L P R T 1 1 0 2 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 3 0 0 15 0 1581.8726 Q15029 Q15029 380 394 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 2.0927E-34 209.8 By matching By MS/MS By MS/MS 1.71 0.452 2 5 1 1 5 79413000 1226700 34422000 43764000 6118 1335 6376 26077;26078;26079;26080;26081;26082;26083 22047;22048;22049;22050;22051;22052 22050 5 1478000 15501000 9837000 ILATMNPGGDFGK KDSEIELLTAGKKFRILATMNPGGDFGKKE FRILATMNPGGDFGKKELSPALRNRFTEIW R I L G K K 1 0 1 1 0 0 0 3 0 1 1 1 1 1 1 0 1 0 0 0 0 0 13 0 1319.6544 Q9NU22 Q9NU22 1517 1529 MDN1 Midasin yes yes 2 0.040999 71.555 By MS/MS 1 0 1 1 2682900 0 2682900 0 6119 2056 6377 26084 22053 22053 1 0 1311400 0 ILATTPSAVFR GGGVTNLLWSPDGSKILATTPSAVFRVWEA DGSKILATTPSAVFRVWEAQMWTCERWPTL K I L F R V 2 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 2 0 0 1 0 0 11 0 1174.671 Q9NRG9 Q9NRG9 302 312 AAAS Aladin yes yes 2 2.089E-05 149.82 By MS/MS 3.5 0.5 1 1 2 10609000 0 0 10609000 6120 2044 6378 26085;26086 22054 22054 1 0 0 1792100 ILDAVVAQEPLHR EGPLCDELIRNVKFKILDAVVAQEPLHRGG FKILDAVVAQEPLHRGGGQIIPTARRVVYS K I L H R G 2 1 0 1 0 1 1 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 0 1459.8147 Q15029 Q15029 791 803 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 6.9376E-34 210.27 By MS/MS By MS/MS 2.88 0.927 4 1 3 3 5 231030000 0 61561000 169470000 6121 1335 6379 26087;26088;26089;26090;26091;26092;26093;26094 22055;22056;22057;22058;22059;22060;22061 22059 7 0 27722000 37030000 ILDDDTIITTLENLKR LEKSLLQALNEVKGRILDDDTIITTLENLK LDDDTIITTLENLKREAAEVTRKVEETDIV R I L K R E 0 1 1 3 0 0 1 0 0 3 3 1 0 0 0 0 3 0 0 0 0 0 16 1 1872.0204 Q14204 Q14204 3760 3775 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.00040457 88.73 By MS/MS 1 0 1 1 4898200 0 0 4898200 6122 1292 6380 26095 22062 22062 1 0 0 1055400 ILDDSDSNLSVVK ECKNYLRKTRGYLIKILDDSDSNLSVVKKL IKILDDSDSNLSVVKKLPVPLESVKEMLKS K I L V K K 0 0 1 3 0 0 0 0 0 1 2 1 0 0 0 3 0 0 0 2 0 0 13 0 1403.7144 A6NKT7;Q7Z3J3 A6NKT7 722 734 RGPD3;RGPD4 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4 yes no 2 0.007018 94.767 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 55555000 0 11612000 43943000 6123 17 6381 26096;26097;26098;26099;26100 22063;22064;22065;22066 22065 4 0 5558100 9640700 ILDDTEDTVVSQR KRKNSQPGVKVADRKILDDTEDTVVSQRKK RKILDDTEDTVVSQRKKIQINQEEERLKNE K I L Q R K 0 1 0 3 0 1 1 0 0 1 1 0 0 0 0 1 2 0 0 2 0 0 13 0 1489.726 P42696 P42696 157 169 RBM34 RNA-binding protein 34 yes yes 2 5.4085E-18 128.51 By MS/MS 4 0 1 1 0 0 0 0 6124 807 6382 26101 22067 22067 1 0 0 0 ILDHLTMIDNK LKTLLHTLCKLKGPKILDHLTMIDNKNESE KGPKILDHLTMIDNKNESELEAHLCRMMKH K I L N K N 0 0 1 2 0 0 0 0 1 2 2 1 1 0 0 0 1 0 0 0 0 0 11 0 1311.6857 Q14008 Q14008 1775 1785 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 0.00032777 126.31 By MS/MS 1 0 2 2 21620000 0 0 21620000 6125 1279 6383 26102;26103 22068;22069 22068 2 0 0 4658300 ILDIDIPMSVGIIDPR HQQLEGWRWNRPGDRILDIDIPMSVGIIDP LDIDIPMSVGIIDPRANPTQLNTVEFLWDP R I L P R A 0 1 0 3 0 0 0 1 0 5 1 0 1 0 2 1 0 0 0 1 0 0 16 0 1765.9648 Q12800 Q12800 149 164 TFCP2 Alpha-globin transcription factor CP2 yes yes 2 0.0020928 89.548 By MS/MS 3.5 0.5 1 1 2 19068000 0 0 19068000 6126 1200 6384 26104;26105 22070 22070 1 0 0 3430700 ILDIDNVDLAMGK PIQQAKALGLQFHSRILDIDNVDLAMGKMM SRILDIDNVDLAMGKMMEQGPVLIITFQAQ R I L G K M 1 0 1 3 0 0 0 1 0 2 2 1 1 0 0 0 0 0 0 1 0 0 13 0 1415.733 O43615 O43615 369 381 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 2 0.0048987 100.72 By MS/MS 5 0 1 1 4520400 0 0 4520400 6127 203 6385 26106 22071 22071 1 0 0 630520 ILDILGETCK LQEIEEPSLEPENEKILDILGETCKSEPVK PENEKILDILGETCKSEPVKEESSELEQPF K I L C K S 0 0 0 1 1 0 1 1 0 2 2 1 0 0 0 0 1 0 0 0 0 0 10 0 1160.6111 Q14151;Q15424 Q15424 217 226 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2 0.00068166 114.89 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 45677000 0 2538800 43138000 6128 1364;1285 6386 26107;26108;26109;26110 22072;22073 22073 2 0 1143300 9530700 ILDMGFADTMNAVIENLPK HATDLQMLVLDEADRILDMGFADTMNAVIE GFADTMNAVIENLPKKRQTLLFSATQTKSV R I L P K K 2 0 2 2 0 0 1 1 0 2 2 1 2 1 1 0 1 0 0 1 0 0 19 0 2091.038 Q13206 Q13206 227 245 DDX10 Probable ATP-dependent RNA helicase DDX10 yes yes 2 1.2025E-08 116.84 By MS/MS 1.5 0.5 1 1 2 7429700 0 0 7429700 6129 1230 6387 26111;26112 22074 22074 1 0 0 1635900 ILDPEGLALGAVIASSK DGFEIVPIEDPAKHRILDPEGLALGAVIAS DPEGLALGAVIASSKKAKRDLIDNSFNRYT R I L S K K 3 0 0 1 0 0 1 2 0 2 3 1 0 0 1 2 0 0 0 1 0 0 17 0 1652.9349 Q8IY81 Q8IY81 662 678 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2;3 0.00058535 95.981 By MS/MS By MS/MS 2.57 1.12 3 4 3 4 8 6 94523000 0 41096000 53427000 6130 1590 6388 26113;26114;26115;26116;26117;26118;26119;26120;26121;26122;26123;26124;26125;26126 22075;22076;22077;22078;22079;22080;22081;22082;22083;22084;22085 22077 11 0 17344000 10794000 ILDSFAAAPVPTTTLVLK SEQSVAVMPEPSMTKILDSFAAAPVPTTTL SFAAAPVPTTTLVLKSSEPVVTMSVEYQMK K I L L K S 3 0 0 1 0 0 0 0 0 1 3 1 0 1 2 1 3 0 0 2 0 0 18 0 1856.0659 P18583 P18583 241 258 SON Protein SON yes yes 2 0.053177 50.155 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 13471000 762810 11295000 1413100 6131 596 6389 26127;26128;26129 22086 22086 1 762810 5520800 319330 ILDSVGIEADDDR ALGGNSSPSAKDIKKILDSVGIEADDDRLN KKILDSVGIEADDDRLNKVISELNGKNIED K I L D R L 1 1 0 4 0 0 1 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1416.6733 P05387 P05387 26 38 RPLP2 60S acidic ribosomal protein P2 yes yes 2 0.00030998 137.89 By MS/MS 9 0 1 1 13935000 0 0 13935000 6132 431 6390 26130 22087 22087 1 0 0 4451300 ILDSVGIEADDDRLNK ALGGNSSPSAKDIKKILDSVGIEADDDRLN LDSVGIEADDDRLNKVISELNGKNIEDVIA K I L N K V 1 1 1 4 0 0 1 1 0 2 2 1 0 0 0 1 0 0 0 1 0 0 16 1 1771.8952 P05387 P05387 26 41 RPLP2 60S acidic ribosomal protein P2 yes yes 2 7.2205E-74 247.3 By MS/MS By MS/MS 8.25 0.829 1 1 2 1 3 411350000 0 12485000 398870000 6133 431 6391 26131;26132;26133;26134 22088;22089;22090 22089 3 0 9997100 108310000 ILDTGISVR RPQLAEQYYDMLIERILDTGISVRKRVIKI DMLIERILDTGISVRKRVIKILRDICIEQP R I L V R K 0 1 0 1 0 0 0 1 0 2 1 0 0 0 0 1 1 0 0 1 0 0 9 0 972.5604 Q6KC79 Q6KC79 1857 1865 NIPBL Nipped-B-like protein yes yes 2 0.035345 75.738 By MS/MS By matching 1.5 0.5 1 1 1 1 11493000 0 8458900 3034100 6134 1480 6392 26135;26136 22091 22091 1 0 4134600 685640 ILDVGFEEELKQIIK MYKNLQCLVIDEADRILDVGFEEELKQIIK ILDVGFEEELKQIIKLLPTRRQTMLFSATQ R I L I K L 0 0 0 1 0 1 3 1 0 3 2 2 0 1 0 0 0 0 0 1 0 0 15 1 1772.9924 Q9NVP1 Q9NVP1 338 352 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3 0.02047 54.094 By MS/MS 3 0 1 1 4634800 0 0 4634800 6135 2069 6393 26137 22092 22092 1 0 0 898930 ILDVMYSR STFDTQITKKMGYYKILDVMYSRLPKDDVH KKMGYYKILDVMYSRLPKDDVHAKESKINQ K I L S R L 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 1 1 0 0 8 0 995.511 P78527 P78527 1876 1883 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00069373 126.28 By MS/MS By MS/MS 1 0 2 1 1 27146000 0 5120500 22025000 6136 1089 6394 26138;26139 22093;22094 22094 2 0 2502900 4745700 ILEANMDIVYKDMVTK FATQQAEIIVSALVKILEANMDIVYKDMVT LEANMDIVYKDMVTKMQQEITFQQVMSQIA K I L T K M 1 0 1 2 0 0 1 0 0 2 1 2 2 0 0 0 1 0 1 2 0 0 16 1 1881.958 Q96AQ8 Q96AQ8 195 210 MCUR1 Mitochondrial calcium uniporter regulator 1 yes yes 3 0.0091203 56.482 By MS/MS By matching 3 0.816 1 1 1 2 1 66263000 64256000 0 2007500 6137 1753 6395 26140;26141;26142 22095 22095 663;664 1 76422000 0 327900 ILEAVGLQDIAPSPAAFPNFEDSTLFGR LGQTFSLASSFRQEKILEAVGLQDIAPSPA PAAFPNFEDSTLFGREYIDHLKAWLVSSGC K I L G R E 4 1 1 2 0 1 2 2 0 2 3 0 0 3 3 2 1 0 0 1 0 0 28 0 2974.5076 Q8IX01 Q8IX01 498 525 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 3 1.6622E-38 139.22 By MS/MS 2 0 1 1 2456800 0 0 2456800 6138 1578 6396 26143 22096 22096 1 0 0 555200 ILEDHGSPAGEIDDEDKDKDETETVK EATGVIQSCAKEAKRILEDHGSPAGEIDDE IDDEDKDKDETETVKQTQTSEVYDGPKNVR R I L V K Q 1 0 0 6 0 0 5 2 1 2 1 3 0 0 1 1 2 0 0 1 0 0 26 2 2884.3098 Q15154 Q15154 1724 1749 PCM1 Pericentriolar material 1 protein yes yes 4 3.9855E-13 98.565 By MS/MS 1.5 0.5 1 1 2 20857000 0 0 20857000 6139 1349 6397 26144;26145 22097 22097 1 0 0 4547200 ILEFDRDFR KHAHFSSRKLCASDKILEFDRDFRIRHYAG LCASDKILEFDRDFRIRHYAGDVVYSVIGF K I L F R I 0 2 0 2 0 0 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 9 1 1209.6142 O94832 O94832 496 504 MYO1D Unconventional myosin-Id yes yes 3 0.00019648 110.87 By MS/MS 2 0 1 1 3255200 0 0 3255200 6140 299 6398 26146 22098 22098 1 0 0 735620 ILEFFGLK ILFIFIDSDHTDNQRILEFFGLKKEECPAV DHTDNQRILEFFGLKKEECPAVRLITLEEE R I L L K K 0 0 0 0 0 0 1 1 0 1 2 1 0 2 0 0 0 0 0 0 0 0 8 0 965.5586 P07237 P07237 301 308 P4HB Protein disulfide-isomerase yes yes 2 0.026045 79.597 By MS/MS 4 0 1 1 3748800 0 3748800 0 6141 456 6399 26147 22099 22099 1 0 1244100 0 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR GGGLTCASAPQGTLRILEGPQQSLSGSPLQ PASPPPQIPPGLRPRFCAFGGNPPVTGPRS R I L P R F 1 2 0 0 0 4 1 3 0 3 4 0 0 0 10 4 0 0 0 0 0 0 32 1 3323.8354 O15446 O15446 117 148 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 3 2.3258E-33 112.9 By MS/MS 3 0 1 1 5892300 0 5892300 0 6142 182 6400 26148 22100 22100 1 0 2511900 0 ILEHMPVSNQKPDTDEAEDPEK ADRMIDMGFEPDVQKILEHMPVSNQKPDTD SNQKPDTDEAEDPEKMLANFESGKHKYRQT K I L E K M 1 0 1 3 0 1 4 0 1 1 1 2 1 0 3 1 1 0 0 1 0 0 22 1 2521.1642 Q9BUQ8 Q9BUQ8 566 587 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3;4 3.1204E-09 91.238 By MS/MS 1.67 0.471 1 2 3 61451000 0 0 61451000 6143 1909 6401 26149;26150;26151 22101;22102 22102 2 0 0 13832000 ILELDQELIK NVKYELQQLEGSSDRILELDQELIKAEREL GSSDRILELDQELIKAERELSKAEKNSNVE R I L I K A 0 0 0 1 0 1 2 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1212.6966 Q92878 Q92878 474 483 RAD50 DNA repair protein RAD50 yes yes 2 0.0016387 108.43 By MS/MS 1.5 0.5 1 1 2 35177000 0 0 35177000 6144 1726 6402 26152;26153 22103;22104 22104 2 0 0 7813000 ILELDQFK NIYVLQELDNPGAKRILELDQFKGQQGQKR DNPGAKRILELDQFKGQQGQKRFQDMMGHG R I L F K G 0 0 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 P12956 P12956 116 123 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00038082 130.77 By MS/MS By MS/MS 3.25 1.56 1 2 2 1 1 1 2 6 196120000 0 53644000 142470000 6145 541 6403 26154;26155;26156;26157;26158;26159;26160;26161 22105;22106;22107;22108;22109;22110 22106 6 0 22956000 27351000 ILELDQFKGQQGQK NIYVLQELDNPGAKRILELDQFKGQQGQKR RILELDQFKGQQGQKRFQDMMGHGSDYSLS R I L Q K R 0 0 0 1 0 4 1 2 0 1 2 2 0 1 0 0 0 0 0 0 0 0 14 1 1630.8679 P12956 P12956 116 129 XRCC6 X-ray repair cross-complementing protein 6 yes yes 3 0.00013652 140.91 By MS/MS 3 0 1 1 18282000 0 18282000 0 6146 541 6404 26162 22111 22111 1 0 7793600 0 ILELLRPDPNTGK FSGTKQQEIVVSRGKILELLRPDPNTGKVH GKILELLRPDPNTGKVHTLLTVEVFGVIRS K I L G K V 0 1 1 1 0 0 1 1 0 1 3 1 0 0 2 0 1 0 0 0 0 0 13 1 1464.83 Q15393 Q15393 37 49 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 0.002481 128.97 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 27732000 0 8507000 19225000 6147 1361 6405 26163;26164;26165;26166 22112;22113;22114 22114 3 0 3830800 4169500 ILELSGSSSEDSEK EPACLAEIEEDKARRILELSGSSSEDSEKV RILELSGSSSEDSEKVIAGLYQRAFQHLSE R I L E K V 0 0 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 14 0 1479.694 P78527 P78527 3359 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0004075 125.72 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 30606000 0 5388500 25218000 6148 1089 6406 26167;26168;26169 22115;22116;22117 22115 3 0 2633800 5494900 ILEQEEEEEQAGKPGEPSK AAVIKMEGGTENDLRILEQEEEEEQAGKPG EEEEEQAGKPGEPSKKEEGRAGAGLGDGER R I L S K K 1 0 0 0 0 2 7 2 0 1 1 2 0 0 2 1 0 0 0 0 0 0 19 1 2126.0015 Q9BXP5 Q9BXP5 267 285 SRRT Serrate RNA effector molecule homolog yes yes 3 2.5449E-09 117.78 By MS/MS 1.5 0.5 1 1 2 20185000 0 0 20185000 6149 1929 6407 26170;26171 22118 22118 1 0 0 4526900 ILEQEEEEEQAGKPGEPSKK AAVIKMEGGTENDLRILEQEEEEEQAGKPG EEEEQAGKPGEPSKKEEGRAGAGLGDGERK R I L K K E 1 0 0 0 0 2 7 2 0 1 1 3 0 0 2 1 0 0 0 0 0 0 20 2 2254.0965 Q9BXP5 Q9BXP5 267 286 SRRT Serrate RNA effector molecule homolog yes yes 3 0.0020166 61.767 By MS/MS 2 0 1 1 2925900 0 0 2925900 6150 1929 6408 26172 22119 22119 1 0 0 661200 ILESITVSSLMATPQDPK PTSDEESTPKKSKARILESITVSSLMATPQ SITVSSLMATPQDPKGQGVGTGRSASKLRI R I L P K G 1 0 0 1 0 1 1 0 0 2 2 1 1 0 2 3 2 0 0 1 0 0 18 0 1929.0129 Q9NQS7 Q9NQS7 227 244 INCENP Inner centromere protein yes yes 2 0.00026824 97.551 By MS/MS 2 0 1 1 3932500 0 0 3932500 6151 2034 6409 26173 22120 22120 1 0 0 888660 ILFEITAGALGK DQEEMEEEAEMEIDRILFEITAGALGKAPS IDRILFEITAGALGKAPSKVTDALPEPEPP R I L G K A 2 0 0 0 0 0 1 2 0 2 2 1 0 1 0 0 1 0 0 0 0 0 12 0 1231.7176 Q9Y3E7 Q9Y3E7 168 179 CHMP3 Charged multivesicular body protein 3 yes yes 2 0.01264 90.15 By matching By MS/MS 6 0 2 1 1 6867300 0 1952500 4914800 6152 2274 6410 26174;26175 22121 22121 1 0 675870 735310 ILFNVVLEAR AKRKSKKNIRKQRMKILFNVVLEAREPGSG KQRMKILFNVVLEAREPGSGRRLCDLFMVK K I L A R E 1 1 1 0 0 0 1 0 0 1 2 0 0 1 0 0 0 0 0 2 0 0 10 0 1172.6917 Q86U86 Q86U86 525 534 PBRM1 Protein polybromo-1 yes yes 2 0.00023065 122.33 By MS/MS 1 0 1 1 5325400 0 0 5325400 6153 1545 6411 26176 22122 22122 1 0 0 1147400 ILFQEFR VLEGIRICRQGFPNRILFQEFRQRYEILTP CRQGFPNRILFQEFRQRYEILTPNAIPKGF R I L F R Q 0 1 0 0 0 1 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 0 7 0 951.5178 Q7Z406 Q7Z406 736 742 MYH14 Myosin-14 yes yes 2 0.0044194 128.82 By MS/MS 1 0 1 1 4475500 0 4475500 0 6154 1531 6412 26177 22123 22123 1 0 2187600 0 ILFRPVASQLPR ITGSKDLQNVNITLRILFRPVASQLPRIFT TLRILFRPVASQLPRIFTSIGEDYDERVLP R I L P R I 1 2 0 0 0 1 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 12 1 1395.8351 P35232 P35232 94 105 PHB Prohibitin yes yes 3 0.0021848 95.094 By MS/MS 6 0 1 1 25830000 0 0 25830000 6155 740 6413 26178 22124 22124 1 0 0 3864400 ILGADTSVDLEETGR QKTGTAEMSSILEERILGADTSVDLEETGR ILGADTSVDLEETGRVLSIGDGIARVHGLR R I L G R V 1 1 0 2 0 0 2 2 0 1 2 0 0 0 0 1 2 0 0 1 0 0 15 0 1574.7788 P25705 P25705 59 73 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 8.3341E-46 224.42 By MS/MS 4 0 1 1 13367000 0 0 13367000 6156 661 6414 26179 22125 22125 1 0 0 2183300 ILGATIENSR DYSHYYTTIQDLRDKILGATIENSRIVLQI DLRDKILGATIENSRIVLQIDNARLAADDF K I L S R I 1 1 1 0 0 0 1 1 0 2 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1072.5877 CON__P08727;P08727 CON__P08727 141 150 KRT19 Keratin, type I cytoskeletal 19 yes no 2 8.057E-07 154.49 By MS/MS By MS/MS 5 1.29 1 1 2 1 1 2 4 354660000 0 118470000 236190000 + 6157 51 6415 26180;26181;26182;26183;26184;26185 22126;22127 22126 2 0 30936000 33404000 ILGLAPSR LYILCTMSIRQNIQKILGLAPSRAATKQAG IRQNIQKILGLAPSRAATKQAGGFLGPPPP K I L S R A 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 8 0 825.50724 Q9UM00 Q9UM00 212 219 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes yes 2 0.070103 67.981 By MS/MS By matching 7 0 2 1 1 4330900 0 2087100 2243800 6158 2197 6416 26186;26187 22128 22128 1 0 1198400 398150 ILGLLDAYLK HNKQATENAKEEVRRILGLLDAYLKTRTFL EEVRRILGLLDAYLKTRTFLVGERVTLADI R I L L K T 1 0 0 1 0 0 0 1 0 1 4 1 0 0 0 0 0 0 1 0 0 0 10 0 1117.6747 P26641 P26641 138 147 EEF1G Elongation factor 1-gamma yes yes 2 0.0035882 101.64 By matching By MS/MS By MS/MS 5.21 2.54 1 1 2 2 2 2 1 1 1 1 1 3 10 129940000 5438600 30604000 93902000 6159 674 6417 26188;26189;26190;26191;26192;26193;26194;26195;26196;26197;26198;26199;26200;26201 22129;22130;22131;22132;22133;22134;22135;22136;22137;22138;22139;22140 22130 12 4243000 8108300 17127000 ILGLLQTYFR MEESHQEATEKEVERILGLLQTYFREDPDT KEVERILGLLQTYFREDPDTPMSFFDFVVD R I L F R E 0 1 0 0 0 1 0 1 0 1 3 0 0 1 0 0 1 0 1 0 0 0 10 0 1222.7074 Q9NXX6;Q8N140 Q9NXX6 270 279 NSMCE4A;EID3 Non-structural maintenance of chromosomes element 4 homolog A;EP300-interacting inhibitor of differentiation 3 yes no 2 4.3988E-11 170.22 By MS/MS 5 0.816 1 1 1 3 9291400 0 0 9291400 6160 2092 6418 26202;26203;26204 22141;22142 22142 2 0 0 1367900 ILGPGLNK DAFLASESLIKQIPRILGPGLNKAGKFPSL LIKQIPRILGPGLNKAGKFPSLLTHNENMV R I L N K A 0 0 1 0 0 0 0 2 0 1 2 1 0 0 1 0 0 0 0 0 0 0 8 0 810.49634 P62906 P62906 123 130 RPL10A 60S ribosomal protein L10a yes yes 2 0.001666 112.66 By matching By MS/MS By MS/MS 6.75 0.433 1 3 1 1 2 482500000 3484000 292790000 186230000 6161 1049 6419 26205;26206;26207;26208 22143;22144;22145 22143 3 7508800 168120000 33046000 ILGPQGNTIK LIPVKQYPKFNFVGKILGPQGNTIKRLQEE NFVGKILGPQGNTIKRLQEETGAKISVLGK K I L I K R 0 0 1 0 0 1 0 2 0 2 1 1 0 0 1 0 1 0 0 0 0 0 10 0 1039.6026 Q07666 Q07666 176 185 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2 0.0064229 94.85 By MS/MS By MS/MS 4.57 2.06 1 1 2 1 2 4 3 94865000 0 36434000 58432000 6162 1178 6420 26209;26210;26211;26212;26213;26214;26215 22146;22147;22148;22149 22149 4 0 12794000 10337000 ILGSGISSSSVLHGMVFK PDSGHFNVDNIRVCKILGSGISSSSVLHGM SGISSSSVLHGMVFKKETEGDVTSVKDAKI K I L F K K 0 0 0 0 0 0 0 3 1 2 2 1 1 1 0 5 0 0 0 2 0 0 18 0 1817.971 P50990 P50990 207 224 CCT8 T-complex protein 1 subunit theta yes yes 3 0.00064014 74.12 By MS/MS 3.5 0.5 1 1 2 13651000 0 0 13651000 6163 885 6421 26216;26217 22150 22150 1 0 0 2305500 ILGSLYAASEDQEKR EKVLKAYPNNYETMKILGSLYAASEDQEKR ILGSLYAASEDQEKRDIAKGHLKKVTEQYP K I L K R D 2 1 0 1 0 1 2 1 0 1 2 1 0 0 0 2 0 0 1 0 0 0 15 1 1678.8526 Q6PD62 Q6PD62 380 394 CTR9 RNA polymerase-associated protein CTR9 homolog yes yes 3 0.00038827 89.507 By MS/MS 1.5 0.5 1 1 2 21993000 0 0 21993000 6164 1494 6422 26218;26219 22151 22151 1 0 0 4914100 ILHGLGFTPAMQR LEELDADKAEMRASRILHGLGFTPAMQRKK SRILHGLGFTPAMQRKKLKDFSGGWRMRVA R I L Q R K 1 1 0 0 0 1 0 2 1 1 2 0 1 1 1 0 1 0 0 0 0 0 13 0 1439.7707 Q9UG63 Q9UG63 211 223 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2;3 0.0014703 91.937 By MS/MS By MS/MS 3 0 2 1 1 28786000 0 19222000 9563900 6165 2142 6423 26220;26221 22152;22153 22152 2 0 8194400 1854900 ILHLQGEGDIVPK LNQNSSRSHSIFSIRILHLQGEGDIVPKIS IRILHLQGEGDIVPKISELSLCDLAGSERC R I L P K I 0 0 0 1 0 1 1 2 1 2 2 1 0 0 1 0 0 0 0 1 0 0 13 0 1417.7929 O95235 O95235 388 400 KIF20A Kinesin-like protein KIF20A yes yes 3 0.050441 43.798 By MS/MS 2 0 1 1 6006900 0 0 6006900 6166 313 6424 26222 22154 22154 1 0 0 1357400 ILIAKPIMFR NFGFVVFDDSEPVQRILIAKPIMFRGEVRL EPVQRILIAKPIMFRGEVRLNVEEKKTRAA R I L F R G 1 1 0 0 0 0 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 10 1 1200.7417 Q9UN86 Q9UN86 388 397 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 3 0.00014388 130.75 By MS/MS 4 0 1 1 10129000 0 10129000 0 6167 2203 6425 26223 22155 22155 1 0 3361400 0 ILIATDVASR ERFAALAKFKSSIYRILIATDVASRGLDIP SSIYRILIATDVASRGLDIPTVQVVINHNT R I L S R G 2 1 0 1 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 10 0 1057.6132 Q9Y6V7 Q9Y6V7 301 310 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 2 0.0012709 109.71 By MS/MS By MS/MS 4 0.707 1 2 1 3 1 19088000 0 11321000 7766200 6168 2317 6426 26224;26225;26226;26227 22156;22157;22158 22158 3 0 3536900 1268500 ILIEDSDQNLK PNHSASIQLCVQKLRILIEDSDQNLKYLGL QKLRILIEDSDQNLKYLGLLAMSKILKTHP R I L L K Y 0 0 1 2 0 1 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1286.6718 O14617 O14617 310 320 AP3D1 AP-3 complex subunit delta-1 yes yes 2 9.0968E-05 141.48 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 31760000 0 2922200 28838000 6169 139 6427 26228;26229;26230;26231;26232 22159;22160;22161 22161 3 0 1428300 6221700 ILIENGVAER ______________________________ DNRIRILIENGVAERQRSLFVVVGDRGKDQ R I L E R Q 1 1 1 0 0 0 2 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1112.619 Q9H0A0 Q9H0A0 12 21 NAT10 N-acetyltransferase 10 yes yes 2 0.00013389 144.09 By matching By MS/MS 2.33 0.471 2 1 1 2 35223000 2282200 0 32941000 6170 1959 6428 26233;26234;26235 22162 22162 1 2749800 0 7202800 ILIFSSR IPGPVCKGKWKNKERILIFSSRGINFRTRH GKWKNKERILIFSSRGINFRTRHLMQDLRM R I L S R G 0 1 0 0 0 0 0 0 0 2 1 0 0 1 0 2 0 0 0 0 0 0 7 0 834.49634 Q8TDN6 Q8TDN6 62 68 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2 1.1565E-07 170.94 By matching By MS/MS By MS/MS 5.86 0.833 3 2 2 1 3 3 71082000 2245400 28522000 40315000 6171 1663 6429 26236;26237;26238;26239;26240;26241;26242 22163;22164;22165;22166 22165 4 1798800 8089300 5810000 ILILQGLK ACEHVFIWDLRKGEKILILQGLKQEVTCLC DLRKGEKILILQGLKQEVTCLCPSPDGLHL K I L L K Q 0 0 0 0 0 1 0 1 0 2 3 1 0 0 0 0 0 0 0 0 0 0 8 0 896.60589 Q9UNX4 Q9UNX4 58 65 WDR3 WD repeat-containing protein 3 yes yes 2 0.0083209 95.793 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 11517000 0 4259000 7257900 6172 2212 6430 26243;26244;26245;26246 22167;22168 22167 2 0 1917900 1579900 ILITTSDRPHGR TDEFASYFNKQTSPKILITTSDRPHGRTVR SPKILITTSDRPHGRTVRLCEQLSTVIPNS K I L G R T 0 2 0 1 0 0 0 1 1 2 1 0 0 0 1 1 2 0 0 0 0 0 12 1 1364.7524 Q9H9Y2 Q9H9Y2 144 155 RPF1 Ribosome production factor 1 yes yes 3 0.0058954 80.979 By MS/MS 5 0 1 1 7076900 0 0 7076900 6173 1999 6431 26247 22169 22169 1 0 0 987100 ILITTVPPNLR NETGFEISSSDATVKILITTVPPNLRKLDP ATVKILITTVPPNLRKLDPELHLDIKVLQS K I L L R K 0 1 1 0 0 0 0 0 0 2 2 0 0 0 2 0 2 0 0 1 0 0 11 0 1235.7602 Q12905 Q12905 175 185 ILF2 Interleukin enhancer-binding factor 2 yes yes 2 0.0003274 124.08 By MS/MS By MS/MS 4.58 1.8 1 1 1 2 3 2 2 6 6 385390000 0 215750000 169640000 6174 1210 6432 26248;26249;26250;26251;26252;26253;26254;26255;26256;26257;26258;26259 22170;22171;22172;22173;22174;22175;22176;22177;22178;22179;22180;22181;22182;22183;22184;22185;22186;22187;22188;22189;22190;22191 22175 22 0 61086000 24557000 ILITTVPPNLRK NETGFEISSSDATVKILITTVPPNLRKLDP TVKILITTVPPNLRKLDPELHLDIKVLQSA K I L R K L 0 1 1 0 0 0 0 0 0 2 2 1 0 0 2 0 2 0 0 1 0 0 12 1 1363.8551 Q12905 Q12905 175 186 ILF2 Interleukin enhancer-binding factor 2 yes yes 3 0.050115 44.299 By MS/MS 5 0 1 1 3989100 0 3989100 0 6175 1210 6433 26260 22192 22192 1 0 1028300 0 ILIVGEPGFGQGSHLAPAVIHALEK LNRNACYQPMSFRPRILIVGEPGFGQGSHL QGSHLAPAVIHALEKFTVYTLDIPVLFGVS R I L E K F 3 0 0 0 0 1 2 4 2 3 3 1 0 1 2 1 0 0 0 2 0 0 25 0 2552.4115 Q6PL18 Q6PL18 795 819 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 3;4 1.2695E-08 86.856 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 47063000 0 6614800 40448000 6176 1498 6434 26261;26262;26263;26264 22193;22194;22195 22194 3 0 2978700 8789700 ILKEDILNYLEK NIKLSEVVGSGKDGRILKEDILNYLEKQTG DGRILKEDILNYLEKQTGAILPPSPKVEIM R I L E K Q 0 0 1 1 0 0 2 0 0 2 3 2 0 0 0 0 0 0 1 0 0 0 12 1 1489.8392 P11182 P11182 200 211 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 3 0.01188 72.659 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 12333000 0 1089700 11243000 6177 519 6435 26265;26266;26267 22196;22197;22198 22197 3 0 280890 1681400 ILKEEQELYQK INYCNEKLQQFFNERILKEEQELYQKEGLG FNERILKEEQELYQKEGLGVNEVHYVDNQD R I L Q K E 0 0 0 0 0 2 3 0 0 1 2 2 0 0 0 0 0 0 1 0 0 0 11 1 1419.7609 Q9UM54 Q9UM54 488 498 MYO6 Unconventional myosin-VI yes yes 2;3 1.2544E-12 178.84 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 30177000 0 22952000 7225300 6178 2198 6436 26268;26269;26270;26271 22199;22200;22201 22199 3 0 10438000 1632800 ILLAELEQLK ANYIDKVRFLEQQNKILLAELEQLKGQGKS EQQNKILLAELEQLKGQGKSRLGDLYEEEM K I L L K G 1 0 0 0 0 1 2 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 10 0 1168.7067 P08670 P08670 130 139 VIM Vimentin yes yes 2 6.348E-11 168.27 By MS/MS By MS/MS By MS/MS 4.38 1.86 1 1 2 3 3 1 1 1 2 4 7 3918100000 86870000 829370000 3001800000 6179 476 6437 26272;26273;26274;26275;26276;26277;26278;26279;26280;26281;26282;26283;26284 22202;22203;22204;22205;22206;22207;22208;22209;22210;22211;22212;22213;22214;22215;22216;22217;22218;22219;22220;22221;22222 22206 21 67853000 263550000 490190000 ILLAELEQLKGQGK ANYIDKVRFLEQQNKILLAELEQLKGQGKS KILLAELEQLKGQGKSRLGDLYEEEMRELR K I L G K S 1 0 0 0 0 2 2 2 0 1 4 2 0 0 0 0 0 0 0 0 0 0 14 1 1538.9032 P08670 P08670 130 143 VIM Vimentin yes yes 2;3 4.2696E-33 208.46 By MS/MS By MS/MS 3.96 1.97 3 3 4 4 4 2 2 1 12 11 1421000000 0 1044400000 376600000 6180 476 6438 26285;26286;26287;26288;26289;26290;26291;26292;26293;26294;26295;26296;26297;26298;26299;26300;26301;26302;26303;26304;26305;26306;26307 22223;22224;22225;22226;22227;22228;22229;22230;22231;22232;22233;22234;22235;22236;22237;22238;22239;22240;22241;22242;22243;22244;22245;22246;22247 22230 25 0 341980000 61110000 ILLAEVPTMAVEK DMVGIDAAIANAFRRILLAEVPTMAVEKVL RRILLAEVPTMAVEKVLVYNNTSIVQDEIL R I L E K V 2 0 0 0 0 0 2 0 0 1 2 1 1 0 1 0 1 0 0 2 0 0 13 0 1412.7949 O15160 O15160 79 91 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes yes 2 0.028539 75.566 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 42038000 0 11591000 30447000 6181 171 6439 26308;26309;26310 22248;22249 22248 2 0 3333200 4246800 ILLANFLAQTEALMR PVQSQHPIRNGLHHKILLANFLAQTEALMR ILLANFLAQTEALMRGKSTEEARKELQAAG K I L M R G 3 1 1 0 0 1 1 0 0 1 4 0 1 1 0 0 1 0 0 0 0 0 15 0 1702.944 CON__Q3ZBD7;P06744 CON__Q3ZBD7 424 438 GPI Glucose-6-phosphate isomerase yes no 2;3 1.1667E-11 180.19 By MS/MS 3.5 0.5 2 2 4 12834000 0 0 12834000 + 6182 87 6440 26311;26312;26313;26314 22250;22251 22250 2 0 0 2198400 ILLEELANSDPK PTGIEDEDALIADVKILLEELANSDPKLAL DVKILLEELANSDPKLALTGVPIVQWPKRD K I L P K L 1 0 1 1 0 0 2 0 0 1 3 1 0 0 1 1 0 0 0 0 0 0 12 0 1340.7187 Q9Y2K7 Q9Y2K7 494 505 KDM2A Lysine-specific demethylase 2A yes yes 2 0.00018854 132.78 By matching By MS/MS 2 0 2 1 1 14406000 2736900 0 11669000 6183 2241 6441 26315;26316 22252 22252 1 3297600 0 2637000 ILLEPESMSK RGVFLPYQCNLSHTKILLEPESMSKVNLNG LSHTKILLEPESMSKVNLNGVFDMTMKIWK K I L S K V 0 0 0 0 0 0 2 0 0 1 2 1 1 0 1 2 0 0 0 0 0 0 10 0 1145.6002 P03243;P03244 P03243 416 425 yes no 2 0.00039478 125.82 By MS/MS By MS/MS By MS/MS 4.29 2.61 6 4 3 5 3 2 4 2 1 1 4 10 17 1803100000 20579000 488910000 1293700000 6184 406 6442;6443 26317;26318;26319;26320;26321;26322;26323;26324;26325;26326;26327;26328;26329;26330;26331;26332;26333;26334;26335;26336;26337;26338;26339;26340;26341;26342;26343;26344;26345;26346;26347 22253;22254;22255;22256;22257;22258;22259;22260;22261;22262;22263;22264;22265;22266;22267;22268;22269;22270;22271;22272;22273;22274;22275;22276;22277 22262 131 25 20571000 173190000 264560000 ILLGGYQSR TTEAKRAAKMEKKMKILLGGYQSRAMGLMK MEKKMKILLGGYQSRAMGLMKQLNDLWDQI K I L S R A 0 1 0 0 0 1 0 2 0 1 2 0 0 0 0 1 0 0 1 0 0 0 9 0 1005.5607 Q99459 Q99459 719 727 CDC5L Cell division cycle 5-like protein yes yes 2 9.5771E-05 114.28 By MS/MS By MS/MS 3.67 1.49 2 1 1 1 1 1 5 42454000 0 0 42454000 6185 1843 6444 26348;26349;26350;26351;26352;26353 22278;22279;22280 22279 3 0 0 6969000 ILLGSEQGSLQLWNVK FKISAILHPSTYLNKILLGSEQGSLQLWNV LLGSEQGSLQLWNVKSNKLLYTFPGWKVGV K I L V K S 0 0 1 0 0 2 1 2 0 1 4 1 0 0 0 2 0 1 0 1 0 0 16 0 1783.9832 Q8NI36 Q8NI36 220 235 WDR36 WD repeat-containing protein 36 yes yes 2 4.7253E-05 145.91 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 18996000 0 10193000 8802400 6186 1648 6445 26354;26355;26356 22281;22282 22281 2 0 4590200 1938600 ILLLGLDNAGK SILRKLKSAPDQEVRILLLGLDNAGKTTLL QEVRILLLGLDNAGKTTLLKQLASEDISHI R I L G K T 1 0 1 1 0 0 0 2 0 1 4 1 0 0 0 0 0 0 0 0 0 0 11 0 1125.6758 P36405 P36405 20 30 ARL3 ADP-ribosylation factor-like protein 3 yes yes 2 0.0003277 125.82 By MS/MS 7 0 1 1 4937700 0 0 4937700 6187 759 6446 26357 22283 22283 1 0 0 876160 ILLLQSWFR RQALQETLHREVVRKILLLQSWFRMVLERR REVVRKILLLQSWFRMVLERRHFLQMKRAA K I L F R M 0 1 0 0 0 1 0 0 0 1 3 0 0 1 0 1 0 1 0 0 0 0 9 0 1174.6863 Q13459 Q13459 960 968 MYO9B Unconventional myosin-IXb yes yes 2 0.00033289 138.83 By MS/MS 1 0 1 1 1523500 0 0 1523500 6188 1250 6447 26358 22284 22284 1 0 0 328270 ILLNPVQVFDVTK RSGTNMGEGLLGEFRILLNPVQVFDVTKTP FRILLNPVQVFDVTKTPPIKALQLCTLLPY R I L T K T 0 0 1 1 0 1 0 0 0 1 2 1 0 1 1 0 1 0 0 3 0 0 13 0 1484.8603 P52429 P52429 242 254 DGKE Diacylglycerol kinase epsilon yes yes 2 0.008023 91.936 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 6674500 0 4008700 2665800 6189 906 6448 26359;26360;26361 22285;22286 22285 2 0 1330300 425280 ILLQLQQEAFQK QTAEEREAERQQANRILLQLQQEAFQKSLA ANRILLQLQQEAFQKSLAQPLPADPLCVHN R I L Q K S 1 0 0 0 0 4 1 0 0 1 3 1 0 1 0 0 0 0 0 0 0 0 12 0 1457.8242 P31314 P31314 274 285 TLX1 T-cell leukemia homeobox protein 1 yes yes 2 0.00026146 130.66 By MS/MS By MS/MS 6 0 2 1 1 3473300 0 0 3473300 6190 719 6449 26362;26363 22287;22288 22288 2 0 0 519640 ILLQTIK QFGDDPKEEVMVLERILLQTIKFDLQVEHP EEVMVLERILLQTIKFDLQVEHPYQFLLKY R I L I K F 0 0 0 0 0 1 0 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 7 0 827.54804 O75909 O75909 146 152 CCNK Cyclin-K yes yes 2 0.021396 100.07 By MS/MS 3 0 1 1 2748400 0 2748400 0 6191 288 6450 26364 22289 22289 1 0 1171600 0 ILLTEPPMNPTK TFGPEKLNIDTRNCKILLTEPPMNPTKNRE NCKILLTEPPMNPTKNREKIVEVMFETYQF K I L T K N 0 0 1 0 0 0 1 0 0 1 2 1 1 0 3 0 2 0 0 0 0 0 12 0 1352.7374 P61160 P61160 107 118 ACTR2 Actin-related protein 2 yes yes 2 0.0011728 116.23 By MS/MS By matching 7.5 1.5 1 2 1 2 2 300790000 0 34731000 266060000 6192 981 6451 26365;26366;26367;26368 22290 22290 1 0 11272000 80914000 ILLTLGIR DANWCGYLHRRDLERILLTLGIRLSAEQAK HRRDLERILLTLGIRLSAEQAKQLVSRVVT R I L I R L 0 1 0 0 0 0 0 1 0 2 3 0 0 0 0 0 1 0 0 0 0 0 8 0 897.60114 Q8N163 Q8N163 728 735 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 4.6427E-06 158.38 By matching By MS/MS 2 0 2 1 1 5356500 690690 0 4665800 6193 1598 6452 26369;26370 22291 22291 1 832200 0 1054400 ILLTLVANPYSYTDK TMEEDKETVIQFLERILLTLVANPYSYTDK ILLTLVANPYSYTDKASDFVQEASMLQATM R I L D K A 1 0 1 1 0 0 0 0 0 1 3 1 0 0 1 1 2 0 2 1 0 0 15 0 1709.924 O60287 O60287 703 717 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00039014 116.01 By MS/MS 1 0 1 1 8452500 0 0 8452500 6194 224 6453 26371 22292 22292 1 0 0 1821200 ILLTQENPFFR FINSRIITVSMEDVKILLTQENPFFRKLSS EDVKILLTQENPFFRKLSSETYSQAKDLAK K I L F R K 0 1 1 0 0 1 1 0 0 1 2 0 0 2 1 0 1 0 0 0 0 0 11 0 1376.7452 Q08J23 Q08J23 629 639 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 2 1.3821E-35 208.37 By MS/MS By MS/MS 4.4 2.42 1 1 2 1 3 2 23473000 0 14961000 8512100 6195 1187 6454 26372;26373;26374;26375;26376 22293;22294;22295 22293 3 0 6622500 1351700 ILMEFNK RLFYHIVDSDEVSTKILMEFNKMNLPGEVT DSDEVSTKILMEFNKMNLPGEVTFLPLNKL K I L N K M 0 0 1 0 0 0 1 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 7 0 893.46807 Q9UQE7 Q9UQE7 572 578 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.018483 105.27 By matching By MS/MS 2 0 2 1 1 26724000 2585700 0 24138000 6196 2222 6455 26377;26378 22296 22296 1 3115400 0 5454700 ILMEHIHK SLYLKVKGNVFKNKRILMEHIHKLKADKAR NVFKNKRILMEHIHKLKADKARKKLLADQA R I L H K L 0 0 0 0 0 0 1 0 2 2 1 1 1 0 0 0 0 0 0 0 0 0 8 0 1019.5586 P84098 P84098 137 144 RPL19 60S ribosomal protein L19 yes yes 2 0.0013404 117.16 By MS/MS By MS/MS 6.12 1.05 1 1 2 4 5 3 142100000 0 48613000 93483000 6197 1111 6456;6457 26379;26380;26381;26382;26383;26384;26385;26386 22297;22298;22299;22300 22298 528 4 0 25687000 15700000 ILMHTFPK HVLPNSSIGILATTRILMHTFPKTDLLLDS GILATTRILMHTFPKTDLLLDSESQGSGVF R I L P K T 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 0 1 0 0 0 0 0 8 0 985.54191 Q8WTT2 Q8WTT2 651 658 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.066331 68.915 By MS/MS 2 0 1 1 5359500 0 0 5359500 6198 1670 6458 26387 22301 22301 1 0 0 1211100 ILMTYSVQDHMETR TSEEKLQILTALCHRILMTYSVQDHMETRQ RILMTYSVQDHMETRQQMSAELWKERLAVL R I L T R Q 0 1 0 1 0 1 1 0 1 1 1 0 2 0 0 1 2 0 1 1 0 0 14 0 1722.8069 Q9UIG0 Q9UIG0 756 769 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.068634 41.967 By MS/MS 2 0 1 1 5712400 0 0 5712400 6199 2164 6459 26388 22302 22302 0 0 0 1290900 ILMVGLDAAGK FANLFKGLFGKKEMRILMVGLDAAGKTTIL KEMRILMVGLDAAGKTTILYKLKLGEIVTT R I L G K T 2 0 0 1 0 0 0 2 0 1 2 1 1 0 0 0 0 0 0 1 0 0 11 0 1086.6107 P84077;P61204;P84085;P18085 P84077 20 30 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 4 yes no 2 0.010155 90.906 By matching By MS/MS 8.4 1.02 1 2 1 1 1 4 85662000 5310600 0 80352000 6200 984 6460 26389;26390;26391;26392;26393 22303;22304;22305 22304 3 4559300 0 40422000 ILNAHMDSLQWIDQNSALLQR GAPADTSDPLQQICKILNAHMDSLQWIDQN DSLQWIDQNSALLQRKVEEVTKVCEGRRKE K I L Q R K 2 1 2 2 0 3 0 0 1 2 4 0 1 0 0 2 0 1 0 0 0 0 21 0 2465.2485 P37198 P37198 477 497 NUP62 Nuclear pore glycoprotein p62 yes yes 3 3.0112E-19 174.02 By MS/MS 3 0 1 1 11955000 0 0 11955000 6201 767 6461 26394 22306 22306 1 0 0 2318600 ILNDDTALK DAFPVAGQKLIYAGKILNDDTALKEYKIDE LIYAGKILNDDTALKEYKIDEKNFVVVMVT K I L L K E 1 0 1 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1001.5393 P54727 P54727 52 60 RAD23B UV excision repair protein RAD23 homolog B yes yes 2 0.062506 67.897 By matching By matching By MS/MS 3.33 0.471 2 1 1 1 1 10282000 2670500 645540 6966300 6202 931 6462 26395;26396;26397 22307 22307 1 3081200 275190 1137800 ILNDLSSDAPGVPR QKRREILSRRPSYRKILNDLSSDAPGVPRI KILNDLSSDAPGVPRIEEEKSEEETSAPAI K I L P R I 1 1 1 2 0 0 0 1 0 1 2 0 0 0 2 2 0 0 0 1 0 0 14 0 1452.7573 P16220 P16220 137 150 CREB1 Cyclic AMP-responsive element-binding protein 1 yes yes 2 0.0003915 128.01 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 19881000 0 5633200 14248000 6203 575 6463 26398;26399 22308;22309 22309 2 0 1452100 2131600 ILNDVQDR KGLAITFVSDENDAKILNDVQDRFEVNISE SDENDAKILNDVQDRFEVNISELPDEIDIS K I L D R F 0 1 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 971.50361 Q13838;O00148 Q13838 399 406 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2 0.048786 73.26 By MS/MS 4 0 1 1 4081300 0 0 4081300 6204 1271 6464 26400 22310 22310 1 0 0 666610 ILNEMRDQYEK VNVEMDAAPGVDLSRILNEMRDQYEKMAEK DLSRILNEMRDQYEKMAEKNRKDAEEWFFT R I L E K M 0 1 1 1 0 1 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 11 1 1437.6922 CON__P02533;P02533;Q04695;CON__Q04695;CON__Q6IFX2 CON__P02533 283 293 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2;3 2.9671E-35 214.82 By MS/MS By MS/MS By MS/MS 5.24 2.88 3 1 1 1 4 1 1 2 2 1 10 2 5 271280000 178270000 14249000 78767000 + 6205 35;73;91 6465;6466 26401;26402;26403;26404;26405;26406;26407;26408;26409;26410;26411;26412;26413;26414;26415;26416;26417 22311;22312;22313;22314;22315;22316;22317;22318;22319;22320;22321;22322;22323;22324 22323 14 136430000 4368400 12701000 ILNEMRDQYEQMAEK VNVEMDAAPGVDLSRILNEMRDQYEQMAEK ILNEMRDQYEQMAEKNRRDAETWFLSKTEE R I L E K N 1 1 1 1 0 2 3 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 15 1 1896.871 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P08779 285 299 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 0.00013212 106.42 By MS/MS By MS/MS 6.6 3.26 1 1 1 1 1 3 2 54713000 36957000 0 17756000 + 6206 53 6467 26418;26419;26420;26421;26422 22325;22326;22327;22328 22325 4 25605000 0 3187200 ILNEPLK LMIRESEDSTDFNDKILNEPLKHSDFFNVK DSTDFNDKILNEPLKHSDFFNVKELFSVRS K I L L K H 0 0 1 0 0 0 1 0 0 1 2 1 0 0 1 0 0 0 0 0 0 0 7 0 825.496 Q9Y399 Q9Y399 62 68 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 2 0.067816 73.039 By matching By matching By MS/MS 6.33 0.943 1 2 1 1 1 6035800 1548900 858760 3628100 6207 2260 6468 26423;26424;26425 22329 22329 1 1240900 493110 643790 ILNFLMHPK LDLERSGVNSELVKRILNFLMHPKPSGKPL SELVKRILNFLMHPKPSGKPLPKSKKTCSK R I L P K P 0 0 1 0 0 0 0 0 1 1 2 1 1 1 1 0 0 0 0 0 0 0 9 0 1111.6212 P35659 P35659 179 187 DEK Protein DEK yes yes 1;2 0.0033353 101.64 By MS/MS By MS/MS 4.18 1.4 1 2 3 3 2 4 7 248460000 0 6589300 241870000 6208 758 6469 26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436 22330;22331;22332;22333;22334 22331 4 0 2379200 37270000 ILNHLSTLR TAVLMEKAAQPHREKILNHLSTLRRDRDKI QPHREKILNHLSTLRRDRDKIQGFQAKGEA K I L L R R 0 1 1 0 0 0 0 0 1 1 3 0 0 0 0 1 1 0 0 0 0 0 9 0 1065.6295 Q12899 Q12899 149 157 TRIM26 Tripartite motif-containing protein 26 yes yes 2 0.021029 81.548 By MS/MS 3 0 1 1 4226800 0 0 4226800 6209 1208 6470 26437 22335 22335 1 0 0 819810 ILNIFGVIK KNVKLTVSNVLKEIKILNIFGVIKGFVEPD VLKEIKILNIFGVIKGFVEPDHYVVVGAQR K I L I K G 0 0 1 0 0 0 0 1 0 3 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1015.643 P02786 P02786 386 394 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 2 0.0080282 91.626 By matching By MS/MS By matching 2.5 0.5 2 2 1 2 1 4217200 582140 1806600 1828500 6210 398 6471 26438;26439;26440;26441 22336;22337 22337 2 701400 785530 354630 ILNLLSPSDGER EQMGDHKMAMDGYRRILNLLSPSDGERFMQ YRRILNLLSPSDGERFMQLARDMAKSYYEA R I L E R F 0 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 0 0 0 0 0 0 12 0 1312.6987 Q9Y5Q9 Q9Y5Q9 277 288 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 0.018673 85.622 By MS/MS 2 0.816 1 1 1 3 12263000 0 12263000 0 6211 2301 6472 26442;26443;26444 22338 22338 1 0 5493000 0 ILNLSGNELK LDDMSSIVQKAPNLKILNLSGNELKSEREL APNLKILNLSGNELKSERELDKIKGLKLEE K I L L K S 0 0 2 0 0 0 1 1 0 1 3 1 0 0 0 1 0 0 0 0 0 0 10 0 1099.6237 Q9UBU9 Q9UBU9 295 304 NXF1 Nuclear RNA export factor 1 yes yes 2 0.00056436 129.42 By MS/MS By MS/MS 3 0 2 1 1 46056000 0 14822000 31234000 6212 2136 6473 26445;26446 22339;22340 22339 2 0 6318600 6057900 ILNPEEIEK KNIELAVMRRDQSLKILNPEEIEKYVAEIE RDQSLKILNPEEIEKYVAEIEKEKEENEKK K I L E K Y 0 0 1 0 0 0 3 0 0 2 1 1 0 0 1 0 0 0 0 0 0 0 9 0 1083.5812 O14818 O14818 219 227 PSMA7 Proteasome subunit alpha type-7 yes yes 2 0.047498 72.23 By matching By MS/MS 6.33 0.471 2 1 1 2 13347000 0 7156700 6190300 6213 147 6474 26447;26448;26449 22341;22342 22342 2 0 2477400 1098400 ILPDDPDKKPQAK WEMIKMDPDLSLTHKILPDDPDKKPQAKQL HKILPDDPDKKPQAKQLQTRADYLIKLLSR K I L A K Q 1 0 0 3 0 1 0 0 0 1 1 3 0 0 3 0 0 0 0 0 0 0 13 2 1463.7984 O14646 O14646 1288 1300 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.0062099 78.324 By MS/MS 1 0 1 1 6897500 0 0 6897500 6214 141 6475 26450 22343 22343 1 0 0 1486200 ILPEYLSNWTMEK TEVIQLFPEKGNMGKILPEYLSNWTMEKVR GKILPEYLSNWTMEKVRREGVKVMPNAIVQ K I L E K V 0 0 1 0 0 0 2 0 0 1 2 1 1 0 1 1 1 1 1 0 0 0 13 0 1622.8014 O95831 O95831 343 355 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.053069 67.776 By MS/MS 4 0 1 1 2719400 0 2719400 0 6215 345 6476 26451 22344 22344 1 0 902480 0 ILPFLSTEQAADILMTTAR VQIMCIRKGKRMVARILPFLSTEQAADILM LSTEQAADILMTTARNLPFLIKKDAQDEVL R I L A R N 3 1 0 1 0 1 1 0 0 2 3 0 1 1 1 1 3 0 0 0 0 0 19 0 2090.1082 Q86TB9 Q86TB9 600 618 PATL1 Protein PAT1 homolog 1 yes yes 3 0.032224 37.09 By MS/MS 3.5 0.5 1 1 2 2364700 0 0 2364700 6216 1540 6477 26452;26453 22345;22346 22346 1 0 0 435100 ILPQDVILK LKEIVKAAKAPVKARILPQDVILKFRDKIE APVKARILPQDVILKFRDKIEKMEKDVYAV R I L L K F 0 0 0 1 0 1 0 0 0 2 2 1 0 0 1 0 0 0 0 1 0 0 9 0 1037.6485 Q96GQ7 Q96GQ7 590 598 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.0090751 89.752 By matching By MS/MS By MS/MS 2.4 0.49 3 2 1 2 2 37287000 2412400 20293000 14581000 6217 1793 6478 26454;26455;26456;26457;26458 22347;22348;22349 22347 3 2906600 9106600 3295100 ILPQYIFNSR QEEFKHIAVFPCKIKILPQYIFNSRDPIVM PCKIKILPQYIFNSRDPIVMGVTVEAGQVK K I L S R D 0 1 1 0 0 1 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 0 10 0 1249.6819 O60841 O60841 1096 1105 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.00027683 140.14 By MS/MS By MS/MS 3.29 2.43 2 2 1 2 3 4 95826000 0 22555000 73271000 6218 236 6479 26459;26460;26461;26462;26463;26464;26465 22350;22351;22352;22353;22354;22355;22356 22354 7 0 10508000 15751000 ILPTLEAVAALGNK MTTGHNVADLVVILKILPTLEAVAALGNKV KILPTLEAVAALGNKVVESLRAQDPSEVLT K I L N K V 3 0 1 0 0 0 1 1 0 1 3 1 0 0 1 0 1 0 0 1 0 0 14 0 1408.829 Q12905 Q12905 128 141 ILF2 Interleukin enhancer-binding factor 2 yes yes 2;3 0.00027932 147.95 By MS/MS By MS/MS By MS/MS 5.25 1.64 1 2 2 6 4 4 1 3 10 7 675480000 18498000 363640000 293340000 6219 1210 6480 26466;26467;26468;26469;26470;26471;26472;26473;26474;26475;26476;26477;26478;26479;26480;26481;26482;26483;26484;26485 22357;22358;22359;22360;22361;22362;22363;22364;22365;22366;22367;22368;22369;22370;22371;22372;22373;22374;22375;22376;22377;22378;22379 22365 23 15375000 101850000 42671000 ILPVETDKKPQGK WELIKTDPELKLTDKILPVETDKKPQGKQL DKILPVETDKKPQGKQLQTRADYLLKLLRK K I L G K Q 0 0 0 1 0 1 1 1 0 1 1 3 0 0 2 0 1 0 0 1 0 0 13 2 1451.8348 O14647 O14647 1296 1308 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 3 0.023937 63.76 By MS/MS By MS/MS 1 0 2 1 1 4416900 0 1091100 3325700 6220 142 6481 26486;26487 22380;22381 22380 2 0 533340 716580 ILPVFDEPPNPTNVEESLKR GVDQEHFSNVVKGEKILPVFDEPPNPTNVE DEPPNPTNVEESLKRTKENDAHLVEVNLNN K I L K R T 0 1 2 1 0 0 3 0 0 1 2 1 0 1 4 1 1 0 0 2 0 0 20 1 2293.1954 Q9NYL9 Q9NYL9 173 192 TMOD3 Tropomodulin-3 yes yes 3 0.00018953 71.376 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 18254000 0 9596900 8657000 6221 2099 6482 26488;26489;26490 22382;22383;22384 22384 3 0 2798900 1207500 ILPWSTFR QPTLHKMSMMGHRVRILPWSTFRLNLSVTT MMGHRVRILPWSTFRLNLSVTTPYNADFDG R I L F R L 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 1 1 1 0 0 0 0 8 0 1018.56 P24928 P24928 476 483 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.002741 107.43 By matching By MS/MS By MS/MS 1 0 3 1 1 1 9175800 1401200 2397400 5377100 6222 653 6483 26491;26492;26493 22385;22386 22385 2 1401200 1171800 1158600 ILQAVNFPFLVK VVKLKQIEHTLNEKRILQAVNFPFLVKLEF EKRILQAVNFPFLVKLEFSFKDNSNLYMVM R I L V K L 1 0 1 0 0 1 0 0 0 1 2 1 0 2 1 0 0 0 0 2 0 0 12 0 1387.8228 P17612 P17612 95 106 PRKACA cAMP-dependent protein kinase catalytic subunit alpha yes yes 2 0.00082185 120.15 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 8574400 0 7325000 1249500 6223 586 6484 26494;26495;26496;26497;26498 22387;22388;22389 22387 3 0 2258700 203480 ILQAVNFPFLVR VVKLKQIEHTLNEKRILQAVNFPFLVRLEY EKRILQAVNFPFLVRLEYAFKDNSNLYMVM R I L V R L 1 1 1 0 0 1 0 0 0 1 2 0 0 2 1 0 0 0 0 2 0 0 12 0 1415.8289 P22694 P22694 95 106 PRKACB cAMP-dependent protein kinase catalytic subunit beta yes yes 2 0.0013989 113.71 By MS/MS 5 0 1 1 1145000 0 1145000 0 6224 634 6485 26499 22390 22390 1 0 295150 0 ILQDGGLQVVEK RKVLISDSLDPCCRKILQDGGLQVVEKQNL CRKILQDGGLQVVEKQNLSKEELIAELQDC K I L E K Q 0 0 0 1 0 2 1 2 0 1 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1297.7242 O43175 O43175 22 33 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.00059875 123.79 By matching By MS/MS By MS/MS 4 0 3 1 1 1 53968000 3346500 27822000 22799000 6225 190 6486 26500;26501;26502 22391;22392 22391 2 2610900 9233200 3723900 ILQDVADEEIAALPR RLRINSLRKNTILPKILQDVADEEIAALPR ILQDVADEEIAALPRDSCPVRIRNRCVMTS K I L P R D 3 1 0 2 0 1 2 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 15 0 1651.8781 O60783 O60783 66 80 MRPS14 28S ribosomal protein S14, mitochondrial yes yes 2 0.00031711 147.91 By MS/MS 9 0 1 1 5756400 0 0 5756400 6226 232 6487 26503 22393 22393 1 0 0 1838800 ILQEAQNLMALTNVDTPLK SVALRTPRTPASQDRILQEAQNLMALTNVD AQNLMALTNVDTPLKGGLNTPLHESDFSGV R I L L K G 2 0 2 1 0 2 1 0 0 1 4 1 1 0 1 0 2 0 0 1 0 0 19 0 2111.1296 Q99459 Q99459 362 380 CDC5L Cell division cycle 5-like protein yes yes 2;3 1.1833E-114 261.35 By MS/MS 2.8 0.748 2 2 1 5 40150000 0 40150000 0 6227 1843 6488 26504;26505;26506;26507;26508 22394;22395;22396;22397;22398 22395 5 0 17323000 0 ILQEGVDPK YTTRCLAPMMSEVIRILQEGVDPKKLDSLT MSEVIRILQEGVDPKKLDSLTTSFGFPVGA R I L P K K 0 0 0 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 9 0 997.54441 P40939 P40939 561 569 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.019656 82.452 By MS/MS 3 0 1 1 5158500 0 5158500 0 6228 789 6489 26509 22399 22399 1 0 2199100 0 ILQELPSVSQETLK DRSLPALKIREELLKILQELPSVSQETLKH KILQELPSVSQETLKHSGIGRAVMYLYKHP K I L L K H 0 0 0 0 0 2 2 0 0 1 3 1 0 0 1 2 1 0 0 1 0 0 14 0 1583.877 Q96ST2 Q96ST2 640 653 IWS1 Protein IWS1 homolog yes yes 2 0.024226 72.34 By MS/MS 2 0 1 1 8898300 0 0 8898300 6229 1835 6490 26510 22400 22400 1 0 0 2010900 ILQGGVGIPHIR KARHPQLLYESKLYKILQGGVGIPHIRWYG LYKILQGGVGIPHIRWYGQEKDYNVLVMDL K I L I R W 0 1 0 0 0 1 0 3 1 3 1 0 0 0 1 0 0 0 0 1 0 0 12 0 1258.751 P48729 P48729 66 77 CSNK1A1 Casein kinase I isoform alpha yes yes 3 0.070788 36.847 By MS/MS By matching 6 0 2 1 1 20226000 0 9045400 11180000 6230 847 6491 26511;26512 22401 22401 1 0 3131200 1672700 ILQGVVVVLSGFQNPFR TEPRRPRAGPEELGKILQGVVVVLSGFQNP QGVVVVLSGFQNPFRSELRDKALELGAKYR K I L F R S 0 1 1 0 0 2 0 2 0 1 2 0 0 2 1 1 0 0 0 4 0 0 17 0 1872.0622 P18887 P18887 319 335 XRCC1 DNA repair protein XRCC1 yes yes 2;3 9.0705E-06 119.39 By MS/MS 3.5 0.5 2 2 4 7829000 0 0 7829000 6231 603 6492 26513;26514;26515;26516 22402;22403 22402 2 0 0 1460200 ILQNEPLPER TRQAAKHDAAAKALRILQNEPLPERLEVNG AKALRILQNEPLPERLEVNGRESEEENLNK R I L E R L 0 1 1 0 0 1 2 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 10 0 1207.6561 O95793 O95793 159 168 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 4.1727E-06 153.05 By MS/MS By MS/MS 4 0 2 1 1 73826000 0 34533000 39293000 6232 341 6493 26517;26518 22404;22405 22404 2 0 11460000 6417800 ILQQIPDHPK DLDEPDTLHTRLKYKILQQIPDHPKHFSIH RLKYKILQQIPDHPKHFSIHPDTGVITTTT K I L P K H 0 0 0 1 0 2 0 0 1 2 1 1 0 0 2 0 0 0 0 0 0 0 10 0 1187.6663 Q08554 Q08554 283 292 DSC1 Desmocollin-1 yes yes 2 0.00022151 128.36 By MS/MS By matching 6.33 3.06 1 1 1 1 1 1 1 2 8 1 49340000 47607000 0 1733100 6233 1185 6494 26519;26520;26521;26522;26523;26524;26525;26526;26527 22406;22407;22408 22408 3 51997000 0 3790500 ILQVSFK AMAIASLNGYRLGDKILQVSFKTNKSHK__ NGYRLGDKILQVSFKTNKSHK_________ K I L F K T 0 0 0 0 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 7 0 833.50109 Q15717 Q15717 314 320 ELAVL1 ELAV-like protein 1 yes yes 2 0.01682 108.24 By MS/MS By MS/MS 4.4 1.62 1 1 1 2 2 3 250750000 0 148320000 102430000 6234 1380 6495 26528;26529;26530;26531;26532 22409;22410 22409 2 0 51448000 15268000 ILRPWQSSETR ELARLNGTLREDDNRILRPWQSSETRSITN DDNRILRPWQSSETRSITNTTVCTKCGGAG R I L T R S 0 2 0 0 0 1 1 0 0 1 1 0 0 0 1 2 1 1 0 0 0 0 11 1 1371.7259 Q15637 Q15637 261 271 SF1 Splicing factor 1 yes yes 2;3 2.2606E-05 116.54 By MS/MS 3.75 0.829 2 1 1 4 36561000 0 36561000 0 6235 1376 6496 26533;26534;26535;26536 22411;22412;22413;22414 22412 4 0 13102000 0 ILSFIQDQEEDYLK YLSMLEDTGFWLESKILSFIQDQEEDYLKL KILSFIQDQEEDYLKLHRVIYQQIIQTYLT K I L L K L 0 0 0 2 0 2 2 0 0 2 2 1 0 1 0 1 0 0 1 0 0 0 14 0 1739.8618 Q86XI2 Q86XI2 858 871 NCAPG2 Condensin-2 complex subunit G2 yes yes 2 3.6035E-11 175.15 By MS/MS 3 0.816 1 1 1 3 11985000 0 0 11985000 6236 1558 6497 26537;26538;26539 22415 22415 1 0 0 2446100 ILSGVVTK DKKCPFTGNVSIRGRILSGVVTKMKMQRTI NVSIRGRILSGVVTKMKMQRTIVIRRDYLH R I L T K M 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 1 0 0 2 0 0 8 0 815.51165 P62280 P62280 72 79 RPS11 40S ribosomal protein S11 yes yes 2 0.0017858 111.01 By MS/MS By MS/MS 7.6 1.36 1 2 1 1 2 3 216950000 0 91346000 125600000 6237 1017 6498 26540;26541;26542;26543;26544 22416;22417;22418;22419 22416 4 0 51588000 32692000 ILSHLQQDSLK VLMEKPDVVVGTPSRILSHLQQDSLKLRDS TPSRILSHLQQDSLKLRDSLELLVVDEADL R I L L K L 0 0 0 1 0 2 0 0 1 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1280.7089 Q9NY93 Q9NY93 145 155 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2;3 3.6879E-07 157.97 By matching By MS/MS By MS/MS 3.83 0.373 1 5 1 2 3 64800000 2245000 27159000 35396000 6238 2095 6499 26545;26546;26547;26548;26549;26550 22420;22421;22422;22423 22421 4 1751500 9013100 5920400 ILSHNPETQQVDIEILSSLPALR TSSYSPDVSDYKEGRILSHNPETQQVDIEI QQVDIEILSSLPALREPGKFDLVYHNENGA R I L L R E 1 1 1 1 0 2 2 0 1 3 4 0 0 0 2 3 1 0 0 1 0 0 23 0 2572.3861 P38432 P38432 500 522 COIL Coilin yes yes 3 7.8925E-15 114.84 By MS/MS 3 0 1 1 8639200 0 0 8639200 6239 772 6500 26551 22424 22424 1 0 0 1675600 ILSIMYYAR KKYEAIITVVKPSTRILSIMYYAREPGKIN VKPSTRILSIMYYAREPGKINHMRYDTLAQ R I L A R E 1 1 0 0 0 0 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 0 9 0 1128.6002 Q9UJA5 Q9UJA5 167 175 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 0.00047066 124.08 By MS/MS 4 0 1 1 3746600 0 3746600 0 6240 2168 6501 26552 22425 22425 1 0 1243300 0 ILSISADIETIGEILK YNASVSVPDSSGPERILSISADIETIGEIL LSISADIETIGEILKKIIPTLEEGLQLPSP R I L L K K 1 0 0 1 0 0 2 1 0 5 2 1 0 0 0 2 1 0 0 0 0 0 16 0 1713.9764 P61978 P61978 87 102 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 4.8818E-05 113.65 By MS/MS 2.75 1.3 1 1 2 4 27967000 0 0 27967000 6241 1002 6502 26553;26554;26555;26556 22426;22427;22428;22429 22427 4 0 0 4980800 ILSISADIETIGEILKK YNASVSVPDSSGPERILSISADIETIGEIL SISADIETIGEILKKIIPTLEEGLQLPSPT R I L K K I 1 0 0 1 0 0 2 1 0 5 2 2 0 0 0 2 1 0 0 0 0 0 17 1 1842.0714 P61978 P61978 87 103 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 5.3872E-06 149.26 By MS/MS By MS/MS 2.86 1.12 1 2 1 3 2 5 124370000 0 3632700 120740000 6242 1002 6503 26557;26558;26559;26560;26561;26562;26563 22430;22431;22432;22433;22434;22435;22436 22432 7 0 1271000 20502000 ILSKPIEVQVGGR FSATFPRAMEALARRILSKPIEVQVGGRSV RRILSKPIEVQVGGRSVVCSDVEQQVIVIE R I L G R S 0 1 0 0 0 1 1 2 0 2 1 1 0 0 1 1 0 0 0 2 0 0 13 1 1394.8245 Q7L014 Q7L014 574 586 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 3 0.0025068 87.216 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 25329000 0 7850600 17478000 6243 1520 6504 26564;26565;26566 22437;22438 22438 2 0 3577900 3949800 ILSSDDYGKDLTSVMR WEMAEEEGWIREKEKILSSDDYGKDLTSVM LSSDDYGKDLTSVMRLLSKHRAFEDEMSGR K I L M R L 0 1 0 3 0 0 0 1 0 1 2 1 1 0 0 3 1 0 1 1 0 0 16 1 1798.8771 Q01082 Q01082 660 675 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.449E-08 174.05 By MS/MS By MS/MS 1 0 3 1 2 44464000 0 14546000 29917000 6244 1128 6505 26567;26568;26569 22439;22440;22441 22441 3 0 7110100 6446100 ILSVQGTEPLVLFK LDKVFKATLSAEVYRILSVQGTEPLVLFKE RILSVQGTEPLVLFKEGAVRGLEALLADPQ R I L F K E 0 0 0 0 0 1 1 1 0 1 3 1 0 1 1 1 1 0 0 2 0 0 14 0 1542.9021 Q9H8H0 Q9H8H0 112 125 NOL11 Nucleolar protein 11 yes yes 2 0.00029148 149.96 By MS/MS By MS/MS By MS/MS 3 0.632 1 3 1 1 3 1 70975000 2024900 35382000 33568000 6245 1995 6506 26570;26571;26572;26573;26574 22442;22443;22444;22445 22444 4 2336300 14482000 6510500 ILTATIENNR DYSPYYKTIEELRDKILTATIENNRVILEI ELRDKILTATIENNRVILEIDNARLAADDF K I L N R V 1 1 2 0 0 0 1 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1143.6248 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 166 175 KRT13 Keratin, type I cytoskeletal 13 no no 2 1.8191E-30 205.7 By MS/MS 3.33 1.7 1 1 1 3 283620000 283620000 0 0 + 6246 57;548 6507 26575;26576;26577 22446;22447 22446 2 279210000 0 0 ILTATVDNANILLQIDNAR DYSQYYRTIEELQNKILTATVDNANILLQI TVDNANILLQIDNARLAADDFRTKFETEQA K I L A R L 3 1 3 2 0 1 0 0 0 3 3 0 0 0 0 0 2 0 0 1 0 0 19 0 2067.1324 Q04695;CON__Q04695 Q04695 145 163 KRT17 Keratin, type I cytoskeletal 17 yes no 2;3 3.6717E-115 267.77 By MS/MS By MS/MS 3.36 1.55 2 2 1 2 4 3 8 65922000 0 8853500 57068000 + 6247 73 6508 26578;26579;26580;26581;26582;26583;26584;26585;26586;26587;26588 22448;22449;22450;22451;22452;22453;22454;22455;22456;22457 22457 9 0 2436900 9464300 ILTATVDNANVLLQIDNAR DYSPYFKTIEDLRNKILTATVDNANVLLQI TVDNANVLLQIDNARLAADDFRTKYETELN K I L A R L 3 1 3 2 0 1 0 0 0 2 3 0 0 0 0 0 2 0 0 2 0 0 19 0 2053.1168 CON__P02533;P02533 CON__P02533 176 194 KRT14 Keratin, type I cytoskeletal 14 yes no 2;3 1.4113E-232 316.61 By MS/MS By MS/MS By MS/MS 4.81 3.08 4 2 3 2 3 1 2 2 2 15 1 5 118430000 87971000 1064200 29398000 + 6248 35 6509 26589;26590;26591;26592;26593;26594;26595;26596;26597;26598;26599;26600;26601;26602;26603;26604;26605;26606;26607;26608;26609 22458;22459;22460;22461;22462;22463;22464;22465;22466;22467;22468;22469;22470;22471;22472 22467 14 72928000 520170 5770400 ILTFDQLALDSPK VTSRARSRILRAGGKILTFDQLALDSPKGC GKILTFDQLALDSPKGCGTVLLSGPRKGRE K I L P K G 1 0 0 2 0 1 0 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1459.7922 Q07020 Q07020 120 132 RPL18 60S ribosomal protein L18 yes yes 2 1.7755E-59 225.67 By MS/MS By MS/MS By MS/MS 6.75 2.14 1 1 1 2 7 1 1 2 1 8 7 1430200000 6858300 302690000 1120700000 6249 1174 6510 26610;26611;26612;26613;26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624;26625 22473;22474;22475;22476;22477;22478;22479;22480;22481;22482;22483;22484;22485;22486;22487 22486 15 14781000 177560000 204280000 ILTFLESTYIPPSYISEMEK DSEADRFSDSHNALRILTFLESTYIPPSYI ESTYIPPSYISEMEKAAKQGDTILVSGMKT R I L E K A 0 0 0 0 0 0 3 0 0 3 2 1 1 1 2 3 2 0 2 0 0 0 20 0 2360.1862 Q8TEM1 Q8TEM1 179 198 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 6.5241E-05 83.087 By MS/MS 1 0 1 1 3836400 0 0 3836400 6250 1666 6511 26626 22488 22488 1 0 0 826620 ILTGGADKNVVVFDK PGILALDLCPSDTNKILTGGADKNVVVFDK ILTGGADKNVVVFDKSSEQILATLKGHTKK K I L D K S 1 0 1 2 0 0 0 2 0 1 1 2 0 1 0 0 1 0 0 3 0 0 15 1 1574.8668 Q9UMS4 Q9UMS4 237 251 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3 3.9771E-07 173.06 By MS/MS 4 0 2 2 91296000 0 91296000 0 6251 2199 6512 26627;26628 22489;22490 22489 2 0 30298000 0 ILTHVAEMQGK QREEMQAQLRELESKILTHVAEMQGKSARE LESKILTHVAEMQGKSAREAAASLSLTLQK K I L G K S 1 0 0 0 0 1 1 1 1 1 1 1 1 0 0 0 1 0 0 1 0 0 11 0 1225.6489 Q9UH99 Q9UH99 492 502 SUN2 SUN domain-containing protein 2 yes yes 2;3 0.00010244 141.02 By MS/MS By MS/MS 3 0.632 1 3 1 2 3 40341000 0 7767100 32574000 6252 2148 6513 26629;26630;26631;26632;26633 22491;22492;22493 22492 3 0 3337200 6235600 ILTITEDGQGLK MNVVQVAELYPELRRILTITEDGQGLKGVK LRRILTITEDGQGLKGVKRERGACEATEEA R I L L K G 0 0 0 1 0 1 1 2 0 2 2 1 0 0 0 0 2 0 0 0 0 0 12 0 1286.7082 P03243 P03243 90 101 yes yes 2 4.558E-59 237.61 By MS/MS By MS/MS By MS/MS 4.65 2.68 3 3 3 3 3 2 2 2 2 5 9 9 3376100000 78790000 1178200000 2119100000 6253 406 6514 26634;26635;26636;26637;26638;26639;26640;26641;26642;26643;26644;26645;26646;26647;26648;26649;26650;26651;26652;26653;26654;26655;26656 22494;22495;22496;22497;22498;22499;22500;22501;22502;22503;22504;22505;22506;22507;22508;22509;22510;22511;22512;22513;22514;22515;22516;22517;22518;22519;22520;22521;22522;22523;22524 22520 31 74752000 420040000 420430000 ILTPIIFK RDRMIQVYFPKEGRKILTPIIFKEENLRTM FPKEGRKILTPIIFKEENLRTMYSQDRHVD K I L F K E 0 0 0 0 0 0 0 0 0 3 1 1 0 1 1 0 1 0 0 0 0 0 8 0 943.61064 P82650 P82650 204 211 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 2 0.0095763 94.262 By matching By MS/MS 6 0 2 1 1 5309700 0 587150 4722500 6254 1096 6515 26657;26658 22525 22525 1 0 203250 706540 ILTPIIFKEENLR RDRMIQVYFPKEGRKILTPIIFKEENLRTM RKILTPIIFKEENLRTMYSQDRHVDVLNLC K I L L R T 0 1 1 0 0 0 2 0 0 3 2 1 0 1 1 0 1 0 0 0 0 0 13 1 1584.9239 P82650 P82650 204 216 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 3 0.0017729 92.781 By MS/MS By MS/MS 6 0 2 1 1 6710900 0 3162000 3548900 6255 1096 6516 26659;26660 22526;22527 22527 2 0 1094600 530950 ILTTIEDLDQKK DLMKKKRIVENDKSKILTTIEDLDQKKNQA KSKILTTIEDLDQKKNQALNIAWQKVNKDF K I L K K N 0 0 0 2 0 1 1 0 0 2 2 2 0 0 0 0 2 0 0 0 0 0 12 1 1415.7872 O95347 O95347 1015 1026 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2;3 0.0029091 109.42 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 33129000 0 5779800 27349000 6256 321 6517 26661;26662;26663;26664;26665 22528;22529;22530;22531 22528 4 0 2659800 6102900 ILVAGDSMDSVK GSREMGEAFAADIPRILVAGDSMDSVKQSA IPRILVAGDSMDSVKQSAALCLLRLYKASP R I L V K Q 1 0 0 2 0 0 0 1 0 1 1 1 1 0 0 2 0 0 0 2 0 0 12 0 1233.6275 O95782 O95782 154 165 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.023512 82.417 By MS/MS 2 0 1 1 13698000 0 0 13698000 6257 339 6518 26666 22532 22532 1 0 0 3095400 ILVATNLFGR ERLSRYQQFKDFQRRILVATNLFGRGMDIE DFQRRILVATNLFGRGMDIERVNIAFNYDM R I L G R G 1 1 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 10 0 1102.6499 Q13838;O00148 Q13838 340 349 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2 1.5137E-29 198.87 By MS/MS By MS/MS By MS/MS 6.38 1.87 1 3 2 1 1 2 2 4 244060000 27459000 48771000 167830000 6258 1271 6519 26667;26668;26669;26670;26671;26672;26673;26674 22533;22534;22535;22536;22537;22538 22537 6 21833000 13103000 26596000 ILVGHALHNDLK LEVVQKEVAEMLKGRILVGHALHNDLKVLF KGRILVGHALHNDLKVLFLDHPKKKIRDTQ R I L L K V 1 0 1 1 0 0 0 1 2 1 3 1 0 0 0 0 0 0 0 1 0 0 12 0 1328.7565 Q9GZR2 Q9GZR2 322 333 REXO4 RNA exonuclease 4 yes yes 2;3 1.521E-05 154.85 By MS/MS By MS/MS 4.5 1.26 1 3 1 1 1 5 55045000 0 11255000 43790000 6259 1951 6520 26675;26676;26677;26678;26679;26680 22539;22540;22541 22541 3 0 3735000 7279400 ILVGPSEIGDASK SVRKSGKHVTNSPFKILVGPSEIGDASKVR FKILVGPSEIGDASKVRVWGKGLSEGHTFQ K I L S K V 1 0 0 1 0 0 1 2 0 2 1 1 0 0 1 2 0 0 0 1 0 0 13 0 1284.6925 Q14315 Q14315 2031 2043 FLNC Filamin-C yes yes 2 0.00038456 125.74 By MS/MS 1.5 0.5 1 1 2 18412000 0 18412000 0 6260 1298 6521 26681;26682 22542 22542 1 0 8778400 0 ILVGTNLVR SRDREKRERERQELRILVGTNLVRLSQLEG ERQELRILVGTNLVRLSQLEGVNVERYKQI R I L V R L 0 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 2 0 0 9 0 983.61277 Q96QK1 Q96QK1 218 226 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.012097 87.435 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 7868200 0 3807000 4061200 6261 1827 6522 26683;26684;26685 22543;22544 22544 2 0 1652600 787680 ILVQQTLNILQQLAVAMGPNIK ELPTALKGRLNDSNKILVQQTLNILQQLAV NILQQLAVAMGPNIKQHVKNLGIPIITVLG K I L I K Q 2 0 2 0 0 4 0 1 0 3 4 1 1 0 1 0 1 0 0 2 0 0 22 0 2404.3876 Q14008 Q14008 915 936 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 1.5342E-20 132.9 By MS/MS By MS/MS 1.57 0.728 4 2 1 3 4 58387000 0 2559400 55828000 6262 1279 6523;6524 26686;26687;26688;26689;26690;26691;26692 22545;22546;22547;22548 22546 591 4 0 1218400 12308000 ILVVIEPLLIDEDYYAR ILYKLDDLVRPYVHKILVVIEPLLIDEDYY VVIEPLLIDEDYYARVEGREIISNLAKAAG K I L A R V 1 1 0 2 0 0 2 0 0 3 3 0 0 0 1 0 0 0 2 2 0 0 17 0 2033.1085 O75533 O75533 574 590 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 2.8202E-13 176.29 By MS/MS 2.67 0.943 2 1 3 61537000 0 0 61537000 6263 270 6525 26693;26694;26695 22549;22550 22549 2 0 0 13873000 ILYDILAFAK KGQGTKEYEIHHGKKILYDILAFAKESVNS HHGKKILYDILAFAKESVNSHVTTLGPQNF K I L A K E 2 0 0 1 0 0 0 0 0 2 2 1 0 1 0 0 0 0 1 0 0 0 10 0 1165.6747 Q8IXB1 Q8IXB1 439 448 DNAJC10 DnaJ homolog subfamily C member 10 yes yes 2 0.0035882 101.64 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 6909300 0 1102700 5806600 6264 1580 6526 26696;26697 22551;22552 22552 2 0 496550 1126200 ILYLTPEQEKDK IMRYVLHCQGTEEEKILYLTPEQEKDKSHF EEKILYLTPEQEKDKSHFTDKETGQEHELI K I L D K S 0 0 0 1 0 1 2 0 0 1 2 2 0 0 1 0 1 0 1 0 0 0 12 1 1475.7872 P62495 P62495 343 354 ETF1 Eukaryotic peptide chain release factor subunit 1 yes yes 3 0.0084359 77.597 By MS/MS 5 0 1 1 0 0 0 0 6265 1028 6527 26698 22553 22553 1 0 0 0 ILYMTDEVNDPSLTIK LPAIILVLIALPSLRILYMTDEVNDPSLTI LYMTDEVNDPSLTIKSIGHQWYWTYEYTDY R I L I K S 0 0 1 2 0 0 1 0 0 2 2 1 1 0 1 1 2 0 1 1 0 0 16 0 1850.9336 P00403 P00403 83 98 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 2 9.4004E-05 105.17 By MS/MS 8 0.816 1 1 1 3 21393000 0 0 21393000 6266 359 6528 26699;26700;26701 22554;22555 22555 2 0 0 4110600 ILYPEIPR TRSGKVFPTGPSDWRILYPEIPRKLRELEA TGPSDWRILYPEIPRKLRELEAEGYKLVIF R I L P R K 0 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 0 8 0 999.57532 Q96T60 Q96T60 194 201 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2 0.013842 89.123 By matching By MS/MS 3.33 0.471 2 1 1 2 23497000 0 3050000 20447000 6267 1840 6529 26702;26703;26704 22556;22557 22557 2 0 1300200 3490800 ILYSQCGDVMR FKEAFQLFDRTGDGKILYSQCGDVMRALGQ GDGKILYSQCGDVMRALGQNPTNAEVLKVL K I L M R A 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 1 0 0 1 1 0 0 11 0 1340.6217 P60660;P14649 P60660 27 37 MYL6;MYL6B Myosin light polypeptide 6;Myosin light chain 6B no no 2 1.2331E-10 174.02 By MS/MS By MS/MS By MS/MS 8.2 0.748 1 2 2 1 3 1 24998000 4810500 12581000 7606600 6268 965;562 6530 26705;26706;26707;26708;26709 22558;22559;22560 22560 3 2700200 8969100 1166200 IMADNPSWDGEK ESPQLSPQDVTTHAKIMADNPSWDGEKTII HAKIMADNPSWDGEKTIIITCSFTPGSCTL K I M E K T 1 0 1 2 0 0 1 1 0 1 0 1 1 0 1 1 0 1 0 0 0 0 12 0 1361.5922 Q6P2Q9 Q6P2Q9 2199 2210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00053099 125.17 By MS/MS By MS/MS 1 0 3 2 1 58746000 0 25517000 33229000 6269 1490 6531;6532 26710;26711;26712 22561;22562;22563 22562 643 3 0 12472000 7159700 IMAISAGDAYASNK YQNARDLLNTGGIQKIMAISAGDAYASNKA KIMAISAGDAYASNKASKAASVLLYSLWAH K I M N K A 4 0 1 1 0 0 0 1 0 2 0 1 1 0 0 2 0 0 1 0 0 0 14 0 1410.6813 Q99959 Q99959 822 835 PKP2 Plakophilin-2 yes yes 2 0.0007222 98.353 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 22184000 0 3791000 18393000 6270 1870 6533 26713;26714;26715 22564;22565 22565 2 0 1707100 3567300 IMAQIER AVFWERCNELQDIEKIMAQIERGEARIQRR NELQDIEKIMAQIERGEARIQRRISIKKAL K I M E R G 1 1 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 7 0 859.45857 O60264;P28370 O60264 900 906 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 0.01682 108.24 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 72038000 5345300 16812000 49880000 6271 223;693 6534 26716;26717;26718;26719 22566;22567 22567 2 6440400 7570800 10429000 IMATPEQVGK LPFADDKRKMPFTEKIMATPEQVGKMKAIV PFTEKIMATPEQVGKMKAIVEKLRFTYRSD K I M G K M 1 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1072.5587 P12956 P12956 452 461 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00030848 138.54 By matching By MS/MS By MS/MS 3.43 2.06 1 2 2 1 1 2 4 1 312930000 167040000 79007000 66881000 6272 541 6535 26720;26721;26722;26723;26724;26725;26726 22568;22569;22570 22569 3 183910000 32908000 12972000 IMDLYGQPEPVKPFLFYR EKVGEQPTLQLKEQKIMDLYGQPEPVKPFL LYGQPEPVKPFLFYRAKTGRTSTLESVAFP K I M Y R A 0 1 0 1 0 1 1 1 0 1 2 1 1 2 3 0 0 0 2 1 0 0 18 1 2212.1391 Q9NZH8 Q9NZH8 104 121 IL36G Interleukin-36 gamma yes yes 3 0.00060403 76.151 By MS/MS 9 0 1 1 2802300 2802300 0 0 6273 2102 6536 26727 22571 22571 1 1573000 0 0 IMDPNIVGSEHYDVAR LGIYPAVDPLDSTSRIMDPNIVGSEHYDVA MDPNIVGSEHYDVARGVQKILQDYKSLQDI R I M A R G 1 1 1 2 0 0 1 1 1 2 0 0 1 0 1 1 0 0 1 2 0 0 16 0 1814.8621 P06576 P06576 407 422 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2;3 8.3009E-13 101.39 By MS/MS By MS/MS 4.2 0.748 1 2 2 1 4 48268000 0 4782200 43486000 6274 444 6537 26728;26729;26730;26731;26732 22572;22573;22574;22575 22574 4 0 1232700 6837200 IMEFTTTLLNTSPEGWK EGERYNYSKCTVVVRIMEFTTTLLNTSPEG EFTTTLLNTSPEGWKLLKKDLCNTHLMRVL R I M W K L 0 0 1 0 0 0 2 1 0 1 2 1 1 1 1 1 4 1 0 0 0 0 17 0 1966.971 P78527 P78527 1341 1357 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 4.0218E-27 198.57 By MS/MS 1 0 1 1 10138000 0 0 10138000 6275 1089 6538 26733 22576 22576 1 0 0 2184500 IMEGPAFNFLDAPAVR GGWPQFGVGAEICARIMEGPAFNFLDAPAV MEGPAFNFLDAPAVRVTGADVPMPYAKILE R I M V R V 3 1 1 1 0 0 1 1 0 1 1 0 1 2 2 0 0 0 0 1 0 0 16 0 1746.8763 P11177 P11177 309 324 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 3.377E-05 128.85 By matching By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 21884000 256230 3501600 18126000 6276 518 6539 26734;26735;26736;26737 22577;22578 22578 2 341180 1212100 2755300 IMETDPLQQGQALASALK MVDVCSVDRRSVLQRIMETDPLQQGQALAS TDPLQQGQALASALKNKKKMQKRADKIASK R I M L K N 3 0 0 1 0 3 1 1 0 1 3 1 1 0 1 1 1 0 0 0 0 0 18 0 1912.9928 Q9NVN8 Q9NVN8 529 546 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes yes 2 2.5595E-09 155.42 By MS/MS 3 0 1 1 1837200 0 1837200 0 6277 2068 6540 26738 22579 22579 1 0 783190 0 IMFEVQDLK TLPNGERLSLPPNVRIMFEVQDLKYATLAT LPPNVRIMFEVQDLKYATLATVSRCGMVWF R I M L K Y 0 0 0 1 0 1 1 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 9 0 1121.5791 Q14204 Q14204 2341 2349 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.056614 69.598 By MS/MS 1 0 1 1 2212700 0 2212700 0 6278 1292 6541 26739 22580 22580 1 0 1081500 0 IMGIPEEEQMGLLR QQDKDMFQETMEAMRIMGIPEEEQMGLLRV RIMGIPEEEQMGLLRVISGVLQLGNIVFKK R I M L R V 0 1 0 0 0 1 3 2 0 2 2 0 2 0 1 0 0 0 0 0 0 0 14 0 1614.8109 P35579 P35579 328 341 MYH9 Myosin-9 yes yes 2;3 6.283E-25 201.84 By MS/MS By MS/MS 1.29 0.452 5 2 5 2 478090000 0 412200000 65895000 6279 752 6542;6543;6544 26740;26741;26742;26743;26744;26745;26746 22581;22582;22583;22584;22585;22586;22587;22588;22589 22585 350;351 9 0 201100000 14267000 IMGLDLPDGGHLTHGYMSDVK ANLAVYTALLQPHDRIMGLDLPDGGHLTHG PDGGHLTHGYMSDVKRISATSIFFESMPYK R I M V K R 0 0 0 3 0 0 0 4 2 1 3 1 2 0 1 1 1 0 1 1 0 0 21 0 2255.0715 P34897 P34897 161 181 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2;3;4 1.5227E-13 144.29 By MS/MS 4.25 0.433 3 1 4 99405000 0 0 99405000 6280 734 6545 26747;26748;26749;26750 22590;22591;22592 22592 3 0 0 16150000 IMGLDLPDGGHLTHGYMSDVKR ANLAVYTALLQPHDRIMGLDLPDGGHLTHG DGGHLTHGYMSDVKRISATSIFFESMPYKL R I M K R I 0 1 0 3 0 0 0 4 2 1 3 1 2 0 1 1 1 0 1 1 0 0 22 1 2411.1726 P34897 P34897 161 182 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 4;5 0.00034951 66.045 By MS/MS 4 0 2 2 18886000 0 0 18886000 6281 734 6546 26751;26752 22593;22594 22594 2 0 0 3084700 IMGNLGAADIDHK EAEQYRKMVMETIEKIMGNLGAADIDHKLE EKIMGNLGAADIDHKLEEQLIDGILYAFQE K I M H K L 2 0 1 2 0 0 0 2 1 2 1 1 1 0 0 0 0 0 0 0 0 0 13 0 1353.6711 O75533 O75533 875 887 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.026039 54.871 By MS/MS 2 0 1 1 19502000 0 0 19502000 6282 270 6547 26753 22595 22595 1 0 0 4407000 IMGVAGGLTNLSK APNLSIIIGASTAAKIMGVAGGLTNLSKMP AKIMGVAGGLTNLSKMPACNIMLLGAQRKT K I M S K M 1 0 1 0 0 0 0 3 0 1 2 1 1 0 0 1 1 0 0 1 0 0 13 0 1259.6908 Q8WWY3 Q8WWY3 231 243 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 2 0.0024263 107.55 By MS/MS By MS/MS 3.5 1.12 1 1 1 1 2 2 42969000 0 8690300 34279000 6283 1691 6548 26754;26755;26756;26757 22596;22597 22597 2 0 2693300 6066800 IMGVLTHLDSFK TFEFLNICQVHGFPKIMGVLTHLDSFKHNK FPKIMGVLTHLDSFKHNKQLKKTKKRLKHR K I M F K H 0 0 0 1 0 0 0 1 1 1 2 1 1 1 0 1 1 0 0 1 0 0 12 0 1359.7221 Q14692 Q14692 179 190 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 0.022282 60.08 By MS/MS 3.5 1.12 1 1 1 1 4 11015000 0 0 11015000 6284 1315 6549 26758;26759;26760;26761 22598 22598 1 0 0 1813800 IMHFPTWVDLK SATLHSFDVKKLSEKIMHFPTWVDLKGEDS LSEKIMHFPTWVDLKGEDSVPDTVHHVVVP K I M L K G 0 0 0 1 0 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 0 11 0 1385.7166 Q92499 Q92499 422 432 DDX1 ATP-dependent RNA helicase DDX1 yes yes 3 0.023445 60.641 By MS/MS 2.5 0.5 1 1 2 5341200 0 0 5341200 6285 1705 6550 26762;26763 22599 22599 1 0 0 1062400 IMIMTDQDQDGSHIK NYEDEDSLKTLRYGKIMIMTDQDQDGSHIK IMIMTDQDQDGSHIKGLLINFIHHNWPSLL K I M I K G 0 0 0 3 0 2 0 1 1 3 0 1 2 0 0 1 1 0 0 0 0 0 15 0 1730.7968 P11388;Q02880 P11388 536 550 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2;3 7.0013E-25 196.48 By MS/MS By MS/MS 1.5 0.707 5 2 1 1 7 363340000 0 11150000 352200000 6286 524;1150 6551;6552 26764;26765;26766;26767;26768;26769;26770;26771 22600;22601;22602;22603;22604;22605;22606 22601 223;224 7 0 5449800 76370000 IMLFTNEDNPHGNDSAK ANLFSDVQFKMSHKRIMLFTNEDNPHGNDS LFTNEDNPHGNDSAKASRARTKAGDLRDTG R I M A K A 1 0 3 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 17 0 1901.8578 P12956 P12956 166 182 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 1.8991E-37 216.03 By MS/MS By MS/MS 2.92 0.954 1 2 7 1 1 4 8 307290000 0 87132000 220150000 6287 541 6553;6554 26772;26773;26774;26775;26776;26777;26778;26779;26780;26781;26782;26783 22607;22608;22609;22610;22611;22612;22613;22614;22615 22613 240 9 0 37276000 42520000 IMLKGDNITLLQSVSN EEIHSKTKSRKQLGRIMLKGDNITLLQSVS MLKGDNITLLQSVSN_______________ R I M S N - 0 0 2 1 0 1 0 1 0 2 3 1 1 0 0 2 1 0 0 1 0 0 16 1 1744.9393 P62304 P62304 77 92 SNRPE Small nuclear ribonucleoprotein E yes yes 2 0.00027949 148.18 By MS/MS 10 0 1 1 11181000 0 11181000 0 6288 1018 6555 26784 22616 22616 1 0 56569000 0 IMLPGVLR VMKDSAVNAICYGAKIMLPGVLRYEDGIEV AICYGAKIMLPGVLRYEDGIEVNQEIVVIT K I M L R Y 0 1 0 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 0 1 0 0 8 0 897.54699 O60832 O60832 315 322 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.0015301 114.54 By MS/MS By MS/MS 4.1 1.7 1 1 1 3 2 1 1 2 8 120490000 0 30294000 90192000 6289 235 6556;6557 26785;26786;26787;26788;26789;26790;26791;26792;26793;26794 22617;22618;22619;22620;22621;22622;22623;22624;22625 22622 96 8 0 9898800 15374000 IMLPWDPTGK RHVLLRQGVLGIKVKIMLPWDPTGKIGPKK GIKVKIMLPWDPTGKIGPKKPLPDHVSIVE K I M G K I 0 0 0 1 0 0 0 1 0 1 1 1 1 0 2 0 1 1 0 0 0 0 10 0 1156.5951 P23396 P23396 188 197 RPS3 40S ribosomal protein S3 yes yes 2 0.00026627 140.35 By MS/MS By MS/MS 7 1.63 2 2 2 1 1 1 5 4 357340000 0 127840000 229510000 6290 641 6558 26795;26796;26797;26798;26799;26800;26801;26802;26803 22626;22627;22628;22629;22630;22631;22632;22633;22634 22628 9 0 49147000 37596000 IMLVEPPVAK SVLKSVESTSPEPSKIMLVEPPVAKVLEPS PEPSKIMLVEPPVAKVLEPSETLVVSSETP K I M A K V 1 0 0 0 0 0 1 0 0 1 1 1 1 0 2 0 0 0 0 2 0 0 10 0 1095.6362 P18583 P18583 289 298 SON Protein SON yes yes 2 0.026237 79.474 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 39272000 0 9012300 30260000 6291 596 6559 26804;26805;26806 22635;22636;22637 22635 3 0 4405100 6572400 IMMEFER MGTMNRQLKLPQIQKIMMEFERQAEIMDMK LKLPQIQKIMMEFERQAEIMDMKEEMMNDA K I M E R Q 0 1 0 0 0 0 2 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 7 0 954.43031 O43633 O43633 125 131 CHMP2A Charged multivesicular body protein 2a yes yes 2 0.01682 108.24 By matching By MS/MS 6 0 2 1 1 10361000 0 2225500 8135500 6292 204 6560 26807;26808 22638 22638 1 0 770400 1217200 IMNGEADAMSLDGGFVYIAGK IECVSAETTEDCIAKIMNGEADAMSLDGGF DAMSLDGGFVYIAGKCGLVPVLAENYNKSD K I M G K C 3 0 1 2 0 0 1 4 0 2 1 1 2 1 0 1 0 0 1 1 0 0 21 0 2158.0075 P02787 P02787 400 420 TF Serotransferrin yes yes 2 5.7222E-08 108.71 By MS/MS 9 0 1 1 2452600 2452600 0 0 6293 399 6561 26809 22639 22639 1 1376600 0 0 IMNLPFK DPKINCGSGRVTPIKIMNLPFKANVNEILD SGRVTPIKIMNLPFKANVNEILDFFHGYRI K I M F K A 0 0 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 7 0 861.47825 Q8IXT5 Q8IXT5 929 935 RBM12B RNA-binding protein 12B yes yes 2 0.017913 106.29 By MS/MS By MS/MS 2 0 2 1 1 6927600 0 2250500 4677100 6294 1587 6562 26810;26811 22640;22641 22640 2 0 1013400 1056900 IMNTFSVMPSPK GTLLISKIREEYPDRIMNTFSVMPSPKVSD PDRIMNTFSVMPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 2 1 2 2 1 0 0 1 0 0 12 0 1350.6676 Q13885;Q9BVA1;Q9BUF5 Q13885 163 174 TUBB2A;TUBB2B;TUBB6 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain no no 2 1.4709E-05 155.15 By MS/MS By matching 4.5 1.32 1 1 1 3 2 7 1 96040000 0 86857000 9183200 6295 1274;1905 6563;6564 26812;26813;26814;26815;26816;26817;26818;26819 22642;22643;22644;22645;22646 22644 588;589 5 0 25609000 1373900 IMNTFSVVPSPK GTLLISKIREEYPDRIMNTFSVVPSPKVSD PDRIMNTFSVVPSPKVSDTVVEPYNATLSV R I M P K V 0 0 1 0 0 0 0 0 0 1 0 1 1 1 2 2 1 0 0 2 0 0 12 0 1318.6955 P07437;P68371;P04350;Q13509 P68371 163 174 TUBB;TUBB4B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 4.4842E-08 168.74 By MS/MS By MS/MS By MS/MS 4.7 2.21 2 3 3 5 4 5 3 1 1 2 13 12 4038200000 18639000 1842600000 2177000000 6296 1079;462;414;1254 6565;6566 26820;26821;26822;26823;26824;26825;26826;26827;26828;26829;26830;26831;26832;26833;26834;26835;26836;26837;26838;26839;26840;26841;26842;26843;26844;26845;26846 22647;22648;22649;22650;22651;22652;22653;22654;22655;22656;22657;22658;22659;22660;22661;22662;22663;22664;22665;22666;22667;22668;22669;22670;22671;22672;22673;22674;22675;22676;22677;22678;22679;22680;22681;22682;22683;22684;22685;22686;22687;22688;22689;22690 22652 142 43 16560000 557970000 335990000 IMNVIGEPIDER GAPIKIPVGPETLGRIMNVIGEPIDERGPI LGRIMNVIGEPIDERGPIKTKQFAPIHAEA R I M E R G 0 1 1 1 0 0 2 1 0 3 0 0 1 0 1 0 0 0 0 1 0 0 12 0 1384.7021 P06576 P06576 144 155 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 7.5061E-05 142 By matching By MS/MS 4 0 2 1 1 13496000 967050 0 12528000 6297 444 6567 26847;26848 22691 22691 1 754470 0 2046300 IMPEDIIINCSK RGRGNHPKMGMLKRRIMPEDIIINCSKDAK KRRIMPEDIIINCSKDAKVPSPPPGHKWKE R I M S K D 0 0 1 1 1 0 1 0 0 4 0 1 1 0 1 1 0 0 0 0 0 0 12 0 1431.7102 P11387 P11387 377 388 TOP1 DNA topoisomerase 1 yes yes 2 0.018414 81.865 By MS/MS 2.5 0.5 1 1 2 5776500 0 0 5776500 6298 523 6568 26849;26850 22692;22693 22693 2 0 0 1305400 IMQTDEEIGK KKKYNARFPPARIKKIMQTDEEIGKVAAAV ARIKKIMQTDEEIGKVAAAVPVIISRALEL K I M G K V 0 0 0 1 0 1 2 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 10 0 1162.554 Q14919 Q14919 20 29 DRAP1 Dr1-associated corepressor yes yes 2 0.0152 85.731 By MS/MS 6 0 1 1 15154000 0 0 15154000 6299 1323 6569 26851 22694 22694 1 0 0 2267200 IMSIVDPNR YDIGNDPQGEAEFARIMSIVDPNRLGVVTF EAEFARIMSIVDPNRLGVVTFQAFIDFMSR R I M N R L 0 1 1 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 0 1 0 0 9 0 1043.5434 P12814 P12814 795 803 ACTN1 Alpha-actinin-1 yes yes 2 0.00072693 131.06 By MS/MS 2.5 0.5 1 1 2 10313000 0 10313000 0 6300 540 6570 26852;26853 22695 22695 1 0 4625900 0 IMSLVDPNHSGLVTFQAFIDFMSR YDVENDRQGEAEFNRIMSLVDPNHSGLVTF SGLVTFQAFIDFMSRETTDTDTADQVIASF R I M S R E 1 1 1 2 0 1 0 1 1 2 2 0 2 3 1 3 1 0 0 2 0 0 24 0 2724.3404 O43707 O43707 814 837 ACTN4 Alpha-actinin-4 yes yes 3 4.5152E-12 103.9 By MS/MS 2 0 1 1 8427600 0 0 8427600 6301 210 6571 26854 22696 22696 1 0 0 1904500 INAVVETGR KQEDFMTTMDANEEKINAVVETGRRLVSDG DANEEKINAVVETGRRLVSDGNINSDRIQE K I N G R R 1 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 2 0 0 9 0 957.52434 Q01082 Q01082 1225 1233 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.072128 66.692 By MS/MS 1 0 1 1 7143100 0 0 7143100 6302 1128 6572 26855 22697 22697 1 0 0 1539100 INDFVLSPGPQPYK NNNFNTIANKLHLQKINDFVLSPGPQPYKV KINDFVLSPGPQPYKVAVYVPGSKGAPSFV K I N Y K V 0 0 1 1 0 1 0 1 0 1 1 1 0 1 3 1 0 0 1 1 0 0 14 0 1573.814 Q9BY44 Q9BY44 170 183 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 2 0.0029092 97.214 By MS/MS 3 0 1 1 4633600 0 4633600 0 6303 1932 6573 26856 22698 22698 1 0 1975300 0 INDRFEFPEQLPLDEFLQK LMRFMYDPQTDQNIKINDRFEFPEQLPLDE FEFPEQLPLDEFLQKTDPKDPANYILHAVL K I N Q K T 0 1 1 2 0 2 3 0 0 1 3 1 0 3 2 0 0 0 0 0 0 0 19 1 2377.1954 Q93009 Q93009 421 439 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 3 0.051417 48.968 By MS/MS 2 0 1 1 900700 0 0 900700 6304 1738 6574 26857 22699 22699 0 0 0 203540 INEAFIEMATTEDAQAAVDYYTTTPALVFGK VEPFGVISNHLILNKINEAFIEMATTEDAQ AVDYYTTTPALVFGKPVRVHLSQKYKRIKK K I N G K P 6 0 1 2 0 1 3 1 0 2 1 1 1 2 1 0 5 0 2 2 0 0 31 0 3379.617 P43243 P43243 434 464 MATR3 Matrin-3 yes yes 3 0.03341 21.771 By MS/MS 2 0 2 2 2843500 0 0 2843500 6305 812 6575 26858;26859 22700;22701;22702 22701 3 0 0 642580 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR VEPFGVISNHLILNKINEAFIEMATTEDAQ YYTTTPALVFGKPVRVHLSQKYKRIKKPEG K I N V R V 6 1 1 2 0 1 3 1 0 2 1 1 1 2 2 0 5 0 2 3 0 0 34 1 3731.8393 P43243 P43243 434 467 MATR3 Matrin-3 yes yes 3 6.2231E-40 118.93 By MS/MS 2 0 1 1 4774300 0 0 4774300 6306 812 6576 26860 22703 22703 1 0 0 1078900 INEAIVAVQAIIADPK LRLLHIEELRELQTKINEAIVAVQAIIADP NEAIVAVQAIIADPKTDHRLGKVGR_____ K I N P K T 4 0 1 1 0 1 1 0 0 4 0 1 0 0 1 0 0 0 0 2 0 0 16 0 1663.9509 Q9Y224 Q9Y224 219 234 C14orf166 UPF0568 protein C14orf166 yes yes 2;3 0.022151 60.157 By matching By MS/MS 7 0 4 2 2 6397600 0 1543400 4854200 6307 2227 6577 26861;26862;26863;26864 22704;22705 22705 2 0 886230 861350 INEILSNALK MENMGRFGSGMNMGRINEILSNALKRGEII MNMGRINEILSNALKRGEIIAKQGGGGGGG R I N L K R 1 0 2 0 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1113.6394 P52272 P52272 372 381 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 3.1515E-17 184.36 By MS/MS By MS/MS By MS/MS 4.25 1.92 1 2 3 3 3 3 1 4 6 6 948430000 39052000 407210000 502160000 6308 902 6578 26865;26866;26867;26868;26869;26870;26871;26872;26873;26874;26875;26876;26877;26878;26879;26880 22706;22707;22708;22709;22710;22711;22712;22713;22714;22715;22716;22717;22718;22719 22711 14 42300000 164430000 94585000 INEILSNALKR MENMGRFGSGMNMGRINEILSNALKRGEII NMGRINEILSNALKRGEIIAKQGGGGGGGS R I N K R G 1 1 2 0 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1269.7405 P52272 P52272 372 382 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 4.5663E-13 174.92 By MS/MS By MS/MS 3.38 0.857 1 4 2 1 6 2 55422000 0 35756000 19666000 6309 902 6579 26881;26882;26883;26884;26885;26886;26887;26888 22720;22721;22722;22723;22724;22725 22721 6 0 14215000 3814300 INEKPQVIADYESGR GRQSKGLTQKDLATKINEKPQVIADYESGR INEKPQVIADYESGRAIPNNQVLGKIERAI K I N G R A 1 1 1 1 0 1 2 1 0 2 0 1 0 0 1 1 0 0 1 1 0 0 15 1 1717.8635 O60869 O60869 99 113 EDF1 Endothelial differentiation-related factor 1 yes yes 2;3 0.0007535 115.34 By MS/MS By MS/MS 7.8 0.748 2 2 1 1 4 59197000 0 5337500 53859000 6310 237 6580 26889;26890;26891;26892;26893 22726;22727;22728;22729 22727 4 0 2428400 10161000 INEMVHFDLPGQEER ASNQPEQFDWAINDRINEMVHFDLPGQEER INEMVHFDLPGQEERERLVRMYFDKYVLKP R I N E R E 0 1 1 1 0 1 3 1 1 1 1 0 1 1 1 0 0 0 0 1 0 0 15 0 1812.8465 Q9NVI7 Q9NVI7 515 529 ATAD3A ATPase family AAA domain-containing protein 3A yes yes 2 0.00049935 141.38 By MS/MS 3 0 1 1 6761400 0 0 6761400 6311 2066 6581 26894 22730 22730 1 0 0 1311400 INEWLTLVEK EVMFKTPVSITEHPKINEWLTLVEKEMRVT TEHPKINEWLTLVEKEMRVTLAKLLAESVT K I N E K E 0 0 1 0 0 0 2 0 0 1 2 1 0 0 0 0 1 1 0 1 0 0 10 0 1243.6812 Q14204 Q14204 1698 1707 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.019245 83.438 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 28444000 10169000 5722100 12553000 6312 1292 6582 26895;26896;26897 22731 22731 1 10169000 2796900 2836700 INFAVFPSLQGGPHNHAIAAVAVALK DPKTGREIPYTFEDRINFAVFPSLQGGPHN GPHNHAIAAVAVALKQACTPMFREYSLQVL R I N L K Q 6 0 2 0 0 1 0 2 2 2 2 1 0 2 2 1 0 0 0 3 0 0 26 0 2641.4493 P34897 P34897 315 340 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 3;4 3.5241E-05 62.735 By MS/MS 3.67 0.471 1 2 3 31040000 0 0 31040000 6313 734 6583 26898;26899;26900 22732;22733 22732 2 0 0 5161900 INFDKYHPGYFGK HPGGRGNAGGLHHHRINFDKYHPGYFGKVG HRINFDKYHPGYFGKVGMKHYHLKRNQSFC R I N G K V 0 0 1 1 0 0 0 2 1 1 0 2 0 2 1 0 0 0 2 0 0 0 13 1 1584.7725 P46776 P46776 43 55 RPL27A 60S ribosomal protein L27a yes yes 3 0.049901 48.112 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 55759000 0 38004000 17755000 6314 827 6584 26901;26902;26903 22734;22735 22734 2 0 21822000 2987000 INFSDLDQR MSVPEQAELEKLKQRINFSDLDQRSIGSDS EKLKQRINFSDLDQRSIGSDSQGRATAANN R I N Q R S 0 1 1 2 0 1 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1106.5356 Q15154 Q15154 107 115 PCM1 Pericentriolar material 1 protein yes yes 2 0.023126 80.165 By MS/MS 1.5 0.5 1 1 2 3113900 0 3113900 0 6315 1349 6585 26904;26905 22736 22736 1 0 1483900 0 INHLEYEDQYKDDNFGEGNDGGILDDK LLLESEQSTSNLNEKINHLEYEDQYKDDNF DNFGEGNDGGILDDKLISNNDGGIFDDPPA K I N D K L 0 0 3 6 0 1 3 4 1 2 2 2 0 1 0 0 0 0 2 0 0 0 27 1 3112.3534 O60216 O60216 206 232 RAD21 Double-strand-break repair protein rad21 homolog yes yes 4 8.5598E-27 117.08 By MS/MS 2 0 1 1 9971500 0 0 9971500 6316 219 6586 26906 22737 22737 1 0 0 2253400 INIPPPSVNR YNRLVGEIMQETGTRINIPPPSVNRTEIVF ETGTRINIPPPSVNRTEIVFTGEKEQLAQA R I N N R T 0 1 2 0 0 0 0 0 0 2 0 0 0 0 3 1 0 0 0 1 0 0 10 0 1105.6244 Q00341 Q00341 256 265 HDLBP Vigilin yes yes 2 0.067159 68.371 By MS/MS 2 0 1 1 3474800 0 3474800 0 6317 1122 6587 26907 22738 22738 1 0 1564800 0 INIPPQR PPQRPQRDQRVREQRINIPPQRGPRPIREA DQRVREQRINIPPQRGPRPIREAGEQGDIE R I N Q R G 0 1 1 0 0 1 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 7 0 836.48684 Q13283 Q13283 308 314 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 0.049313 77.72 By MS/MS 4 0 1 1 3137900 0 3137900 0 6318 1236 6588 26908 22739 22739 0 0 1041300 0 INISEGNCPER KGESVKKMREESGARINISEGNCPERIITL SGARINISEGNCPERIITLAGPTNAIFKAF R I N E R I 0 1 2 0 1 0 2 1 0 2 0 0 0 0 1 1 0 0 0 0 0 0 11 0 1287.5877 Q15366;P57721;Q15365 Q15366 47 57 PCBP2;PCBP3;PCBP1 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3;Poly(rC)-binding protein 1 no no 2 2.6398E-19 168.83 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 27732000 0 2144400 25588000 6319 1357;1356 6589 26909;26910;26911 22740;22741;22742 22741 2 0 742330 3708000 INISQVIAVVGQQNVEGK NNFKSMVVSGAKGSKINISQVIAVVGQQNV SQVIAVVGQQNVEGKRIPFGFKHRTLPHFI K I N G K R 1 0 2 0 0 3 1 2 0 3 0 1 0 0 0 1 0 0 0 4 0 0 18 0 1895.0476 P24928 P24928 779 796 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 2.4116E-08 140.53 By MS/MS By MS/MS 1 0 2 1 1 3421200 0 971820 2449400 6320 653 6590 26912;26913 22743;22744 22744 2 0 475010 527750 INLIAPPR LRAGLNCSTENMPIKINLIAPPRYVMTTTT TENMPIKINLIAPPRYVMTTTTLERTEGLS K I N P R Y 1 1 1 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 8 0 892.54944 P05198 P05198 227 234 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.0040348 103.02 By matching By MS/MS 4.33 2.36 1 2 1 2 104100000 4632900 0 99470000 6321 428 6591 26914;26915;26916 22745;22746;22747 22747 3 6168800 0 15190000 INLWHLEITDR INSDYETYLSADDLRINLWHLEITDRSFNI DDLRINLWHLEITDRSFNIVDIKPANMEEL R I N D R S 0 1 1 1 0 0 1 0 1 2 2 0 0 0 0 0 1 1 0 0 0 0 11 0 1408.7463 P63151;Q66LE6 P63151 200 210 PPP2R2A;PPP2R2D Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform yes no 3 0.0018848 90.653 By MS/MS 4 0 1 1 2927700 0 0 2927700 6322 1060 6592 26917 22748 22748 1 0 0 478180 INNEIDQLMNQMQQIETQQR LEAKLNENLRRNIERINNEIDQLMNQMQQI DQLMNQMQQIETQQRKFKASRDSILSEMKM R I N Q R K 0 1 3 1 0 6 2 0 0 3 1 0 2 0 0 0 1 0 0 0 0 0 20 0 2473.169 Q9UQE7 Q9UQE7 707 726 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.4886E-186 297.83 By MS/MS By MS/MS 1.67 0.667 4 4 1 2 7 41751000 0 7204800 34546000 6323 2222 6593;6594 26918;26919;26920;26921;26922;26923;26924;26925;26926 22749;22750;22751;22752;22753;22754;22755;22756 22752 718;719 8 0 3283600 7507100 INNFSADIKDSK LRWANFHLENSGWQKINNFSADIKDSKAYF WQKINNFSADIKDSKAYFHLLNQIAPKGQK K I N S K A 1 0 2 2 0 0 0 0 0 2 0 2 0 1 0 2 0 0 0 0 0 0 12 1 1350.6779 P13797 P13797 289 300 PLS3 Plastin-3 yes yes 3 0.059564 46.481 By MS/MS 3 0 1 1 2219700 0 2219700 0 6324 551 6595 26927 22757 22757 1 0 946260 0 INPYMSSPCHIEMILTEK KAPKMRRRTYRAHGRINPYMSSPCHIEMIL YMSSPCHIEMILTEKEQIVPKPEEEVAQKK R I N E K E 0 0 1 0 1 0 2 0 1 3 1 1 2 0 2 2 1 0 1 0 0 0 18 0 2162.021 P18621 P18621 136 153 RPL17 60S ribosomal protein L17 yes yes 3 0.00029254 78.794 By MS/MS 7 0 1 1 31558000 0 0 31558000 6325 597 6596 26928 22758 22758 1 0 0 5599700 INQLSEENGDLSFK QCQDLKTEKSQMDRKINQLSEENGDLSFKL KINQLSEENGDLSFKLREFASHLQQLQDAL K I N F K L 0 0 2 1 0 1 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 14 0 1592.7682 Q14980 Q14980 313 326 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 2.3064E-72 240.08 By MS/MS By MS/MS 1 0 2 1 1 23655000 0 6437000 17218000 6326 1327 6597 26929;26930 22759;22760 22759 2 0 3146300 3709800 INQMATAPDSQR GFSRSNPYYIVKQGKINQMATAPDSQRLKL QGKINQMATAPDSQRLKLLREVAGTRVYDE K I N Q R L 2 1 1 1 0 2 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 0 12 0 1330.6299 Q9UQE7 Q9UQE7 144 155 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 5.9141E-08 166.86 By matching By MS/MS 1.33 0.471 2 1 1 2 8534600 0 1804400 6730300 6327 2222 6598 26931;26932;26933 22761;22762 22761 2 0 881950 1479300 INREQFWEQAK GTTYQKTDAAVEMKRINREQFWEQAKKEEE EMKRINREQFWEQAKKEEELRKEEERKKAL R I N A K K 1 1 1 0 0 2 2 0 0 1 0 1 0 1 0 0 0 1 0 0 0 0 11 1 1447.7208 Q16643 Q16643 175 185 DBN1 Drebrin yes yes 3 0.057159 48.659 By MS/MS 2 0 1 1 10184000 0 10184000 0 6328 1395 6599 26934 22763 22763 1 0 4585900 0 INSWVESQTNEK ESVDFANAPEESRKKINSWVESQTNEKIKN RKKINSWVESQTNEKIKNLIPEGNIGSNTT K I N E K I 0 0 2 0 0 1 2 0 0 1 0 1 0 0 0 2 1 1 0 1 0 0 12 0 1433.6787 P29508;P48594 P29508 147 158 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 4.7412E-12 178.84 By MS/MS By matching 6.57 2.44 1 1 1 1 1 1 1 6 1 47311000 45643000 0 1668300 6329 700 6600 26935;26936;26937;26938;26939;26940;26941 22764;22765;22766;22767 22767 4 41435000 0 3648700 INSYGYGDHYIHIK QTDQKIRMGGKGIPRINSYGYGDHYIHIKI RINSYGYGDHYIHIKIRVPKRLTSRQQSLI R I N I K I 0 0 1 1 0 0 0 2 2 3 0 1 0 0 0 1 0 0 3 0 0 0 14 0 1678.8104 Q96EY1 Q96EY1 396 409 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2;3 0.00078292 113.61 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 103590000 0 12817000 90774000 6330 1778 6601 26942;26943;26944;26945 22768;22769;22770 22770 3 0 3303900 12688000 INVELSTK AAIAQLNGKEVKGKRINVELSTKGQKKGPG KEVKGKRINVELSTKGQKKGPGLAVQSGDK R I N T K G 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 8 0 902.5073 Q96PK6 Q96PK6 142 149 RBM14 RNA-binding protein 14 yes yes 2 0.00046461 129.56 By MS/MS 3 0 1 1 85718000 0 0 85718000 6331 1818 6602 26946 22771 22771 1 0 0 16625000 INVLLQAFISQLK VPIPVKESIEEPSAKINVLLQAFISQLKLE AKINVLLQAFISQLKLEGFALMADMVYVTQ K I N L K L 1 0 1 0 0 2 0 0 0 2 3 1 0 1 0 1 0 0 0 1 0 0 13 0 1485.8919 O75643 O75643 1059 1071 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.05054 43.761 By MS/MS 1 0 1 1 377570 0 0 377570 6332 277 6603 26947 22772 22772 1 0 0 81353 INVYYNEAAGNK PTGSYHGDSDLQLERINVYYNEAAGNKYVP LERINVYYNEAAGNKYVPRAILVDLEPGTM R I N N K Y 2 0 3 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 2 1 0 0 12 0 1354.6517 Q13885 Q13885 47 58 TUBB2A Tubulin beta-2A chain yes yes 2 6.4297E-08 166.19 By MS/MS By MS/MS 6.8 2.64 1 2 2 3 2 88652000 0 43412000 45240000 6333 1274 6604 26948;26949;26950;26951;26952 22773;22774;22775;22776 22773 3 0 17972000 13312000 INVYYNEATGGK PTGTYHGDSDLQLERINVYYNEATGGKYVP LERINVYYNEATGGKYVPRAVLVDLEPGTM R I N G K Y 1 0 2 0 0 0 1 2 0 1 0 1 0 0 0 0 1 0 2 1 0 0 12 0 1327.6408 P68371 P68371 47 58 TUBB4B Tubulin beta-4B chain yes yes 2 9.2256E-57 190.88 By MS/MS By MS/MS By MS/MS 5.79 2.73 2 2 3 2 2 2 2 2 2 1 9 9 2426000000 46457000 882030000 1497500000 6334 1079 6605 26953;26954;26955;26956;26957;26958;26959;26960;26961;26962;26963;26964;26965;26966;26967;26968;26969;26970;26971 22777;22778;22779;22780;22781;22782;22783;22784;22785;22786;22787;22788;22789;22790;22791;22792;22793;22794;22795;22796;22797 22789 21 36245000 389180000 326850000 INVYYNEATGGKYVPR PTGTYHGDSDLQLERINVYYNEATGGKYVP NVYYNEATGGKYVPRAVLVDLEPGTMDSVR R I N P R A 1 1 2 0 0 0 1 2 0 1 0 1 0 0 1 0 1 0 3 2 0 0 16 1 1842.9264 P68371 P68371 47 62 TUBB4B Tubulin beta-4B chain yes yes 3 1.1761E-05 112.17 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 10583000 0 7797000 2785600 6335 1079 6606 26972;26973 22798;22799 22798 2 0 2009800 454980 INVYYNEATGGNYVPR PTGTYHGDSDLQLERINVYYNEATGGNYVP NVYYNEATGGNYVPRAVLVDLEPGTMDSVR R I N P R A 1 1 3 0 0 0 1 2 0 1 0 0 0 0 1 0 1 0 3 2 0 0 16 0 1828.8744 P04350 P04350 47 62 TUBB4A Tubulin beta-4A chain yes yes 2 6.1714E-13 182.35 By MS/MS By matching 4.67 0.471 1 2 2 1 15535000 0 8624800 6910300 6336 414 6607 26974;26975;26976 22800;22801 22801 2 0 2427000 963870 INVYYNESSSQK PAGGYVGDSALQLERINVYYNESSSQKYVP LERINVYYNESSSQKYVPRAALVDLEPGTM R I N Q K Y 0 0 2 0 0 1 1 0 0 1 0 1 0 0 0 3 0 0 2 1 0 0 12 0 1430.6678 Q9BUF5 Q9BUF5 47 58 TUBB6 Tubulin beta-6 chain yes yes 2 2.7182E-06 162.36 By MS/MS 4 0.816 1 1 1 3 48511000 0 0 48511000 6337 1905 6608 26977;26978;26979 22802;22803 22803 2 0 0 7419400 INYEESMMVR RHPHVTRQSQEDQHRINYEESMMVRLSVSK EDQHRINYEESMMVRLSVSKREKGRRKRAN R I N V R L 0 1 1 0 0 0 2 0 0 1 0 0 2 0 0 1 0 0 1 1 0 0 10 0 1270.5686 Q8NEJ9 Q8NEJ9 239 248 NGDN Neuroguidin yes yes 2 6.3172E-08 163.2 By MS/MS By MS/MS 6 0 2 1 1 12871000 0 2705100 10166000 6338 1639 6609 26980;26981 22804;22805 22805 2 0 936390 1521000 IPAASAAAMNLASAR LMSLRTAPAANLASRIPAASAAAMNLASAR IPAASAAAMNLASARTPAIPTAVNLADSRT R I P A R T 7 1 1 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 0 0 0 0 15 0 1413.7398 Q9UQ35 Q9UQ35 2232 2246 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 0.00028576 127.56 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 63888000 0 32885000 31004000 6339 2219 6610 26982;26983;26984;26985 22806;22807;22808 22807 3 0 15529000 6680200 IPAEDVPLLLMNPEAGKPSDLILTR QENLNPLVVLNLFKRIPAEDVPLLLMNPEA MNPEAGKPSDLILTRLLVPPLCIRPSVVSD R I P T R L 2 1 1 2 0 0 2 1 0 2 5 1 1 0 4 1 1 0 0 1 0 0 25 1 2701.4724 O14802 O14802 230 254 POLR3A DNA-directed RNA polymerase III subunit RPC1 yes yes 3 0.00085065 50.029 By MS/MS 2 0 1 1 1031600 0 1031600 0 6340 146 6611 26986 22809 22809 1 0 464560 0 IPAFLNVVDIAGLVK ERFDFLCQYHKPASKIPAFLNVVDIAGLVK IPAFLNVVDIAGLVKGAHNGQGLGNAFLSH K I P V K G 2 0 1 1 0 0 0 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 15 0 1567.9338 Q9NTK5 Q9NTK5 84 98 OLA1 Obg-like ATPase 1 yes yes 2 1.088E-07 171.32 By MS/MS 5 0 1 1 6174800 0 6174800 0 6341 2055 6612 26987 22810 22810 1 0 1591700 0 IPAIFSPAFYTSR ISDFARKRQEAVAGRIPAIFSPAFYTSRYG GRIPAIFSPAFYTSRYGYKMCLRIYLNGDG R I P S R Y 2 1 0 0 0 0 0 0 0 2 0 0 0 2 2 2 1 0 1 0 0 0 13 0 1468.7715 Q12933 Q12933 373 385 TRAF2 TNF receptor-associated factor 2 yes yes 2 5.3968E-05 157.75 By MS/MS By MS/MS 4 0 2 1 1 15110000 0 3022400 12087000 6342 1213 6613 26988;26989 22811;22812;22813 22812 3 0 1003000 1974300 IPALDLLIK TCTSVYTKDRAAKCKIPALDLLIKLLQTFR RAAKCKIPALDLLIKLLQTFRSSRLMDEFK K I P I K L 1 0 0 1 0 0 0 0 0 2 3 1 0 0 1 0 0 0 0 0 0 0 9 0 994.64267 P78527 P78527 125 133 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00063684 128.61 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 9919100 0 2003900 7915100 6343 1089 6614 26990;26991;26992;26993 22814;22815 22815 2 0 979490 1696700 IPALQSLLLFSR SLLETNKPYLVNCVRIPALQSLLLFSRSLD CVRIPALQSLLLFSRSLDTNGDCSRLVADG R I P S R S 1 1 0 0 0 1 0 0 0 1 4 0 0 1 1 2 0 0 0 0 0 0 12 0 1356.8129 Q14147 Q14147 898 909 DHX34 Probable ATP-dependent RNA helicase DHX34 yes yes 2 0.011756 91.549 By MS/MS 2 0 1 1 2001300 0 2001300 0 6344 1284 6615 26994 22816 22816 1 0 901230 0 IPDEFDNDPILVQQLR VYIFGNNPVDENGAKIPDEFDNDPILVQQL PDEFDNDPILVQQLRRTYKYFKDYRQMIIE K I P L R R 0 1 1 3 0 2 1 0 0 2 2 0 0 1 2 0 0 0 0 1 0 0 16 0 1910.9738 Q3ZCQ8 Q3ZCQ8 98 113 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes yes 2 3.4693E-08 164.13 By MS/MS 6 0 1 1 4318100 0 0 4318100 6345 1416 6616 26995 22817 22817 1 0 0 646030 IPDEIIDMVK MPECYIRGSTIKYLRIPDEIIDMVKEEVVA IKYLRIPDEIIDMVKEEVVAKGRGRGGLQQ R I P V K E 0 0 0 2 0 0 1 0 0 3 0 1 1 0 1 0 0 0 0 1 0 0 10 0 1171.6159 Q9Y4Z0 Q9Y4Z0 71 80 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 2 0.0081608 91.087 By matching By MS/MS 8.33 0.471 2 1 1 2 18748000 0 2464900 16283000 6346 2291 6617 26996;26997;26998 22818 22818 1 0 1121400 2633600 IPDWFLNR VERVITIMQNPRQYKIPDWFLNRQKDVKDG QNPRQYKIPDWFLNRQKDVKDGKYSQVLAN K I P N R Q 0 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 8 0 1059.5502 P62269 P62269 79 86 RPS18 40S ribosomal protein S18 yes yes 2 1.2451E-13 178.84 By MS/MS By MS/MS By MS/MS 8.09 1.24 1 3 3 2 2 1 6 4 632930000 13240000 155930000 463760000 6347 1014 6618 26999;27000;27001;27002;27003;27004;27005;27006;27007;27008;27009 22819;22820;22821;22822;22823;22824;22825;22826;22827;22828;22829;22830;22831 22824 13 11367000 84952000 79200000 IPEINSSDMSAHVTSPSGR PSVATVGSICDLNLKIPEINSSDMSAHVTS NSSDMSAHVTSPSGRVTEAEIVPMGKNSHC K I P G R V 1 1 1 1 0 0 1 1 1 2 0 0 1 0 2 5 1 0 0 1 0 0 19 0 1983.932 O75369 O75369 2121 2139 FLNB Filamin-B yes yes 3 6.0175E-06 99.508 By MS/MS 1 0 1 1 5859200 0 5859200 0 6348 254 6619 27010 22832 22832 1 0 2863900 0 IPEIQATMR QKSTEVMKAMQSLVKIPEIQATMRELSKEM MQSLVKIPEIQATMRELSKEMMKAGIIEEM K I P M R E 1 1 0 0 0 1 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 0 9 0 1057.559 Q9Y3E7 Q9Y3E7 120 128 CHMP3 Charged multivesicular body protein 3 yes yes 2 1.7219E-07 160.54 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 32182000 0 10483000 21698000 6349 2274 6620 27011;27012;27013 22833;22834;22835 22834 3 0 3629000 3368000 IPEIWEGHNIADYIDPAIMK QKYWDLMNLSEKHDKIPEIWEGHNIADYID EGHNIADYIDPAIMKKLEELEKEEELRTAA K I P M K K 2 0 1 2 0 0 2 1 1 5 0 1 1 0 2 0 0 1 1 0 0 0 20 0 2324.1511 Q9BZE4 Q9BZE4 429 448 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 0.046965 31.067 By MS/MS 3 0.816 1 1 1 3 29322000 0 0 29322000 6350 1941 6621 27014;27015;27016 22836 22836 1 0 0 5735300 IPEPQKPQLKPPEDIVR TSQNQFSEHDKTLYRIPEPQKPQLKPPEDI EPQKPQLKPPEDIVRSNHYDPEEDEEYYRK R I P V R S 0 1 0 1 0 2 2 0 0 2 1 2 0 0 5 0 0 0 0 1 0 0 17 2 1983.1153 Q07157 Q07157 1326 1342 TJP1 Tight junction protein ZO-1 yes yes 4 0.0098586 55.33 By MS/MS 1 0 1 1 11867000 0 0 11867000 6351 1177 6622 27017 22837 22837 1 0 0 2556900 IPEPWITPPDLQEK LQDIGDTLSRAERIRIPEPWITPPDLQEKI RIPEPWITPPDLQEKIHIFAQKCLFLTESL R I P E K I 0 0 0 1 0 1 2 0 0 2 1 1 0 0 4 0 1 1 0 0 0 0 14 0 1661.8665 P14373 P14373 263 276 TRIM27 Zinc finger protein RFP yes yes 2 0.0004075 125.72 By MS/MS 4 0 1 1 3029300 0 0 3029300 6352 557 6623 27018 22838 22838 1 0 0 494790 IPFIRPADQYKDPQSK RQREIEMNRQQRFFRIPFIRPADQYKDPQS PFIRPADQYKDPQSKKKGWWYAHFDGPWIA R I P S K K 1 1 0 2 0 2 0 0 0 2 0 2 0 1 3 1 0 0 1 0 0 0 16 2 1901.9999 Q9UM54 Q9UM54 1182 1197 MYO6 Unconventional myosin-VI yes yes 3 0.032161 48.314 By MS/MS 2 0 1 1 10867000 0 10867000 0 6353 2198 6624 27019 22839 22839 1 0 4893600 0 IPFTFWAR LTWDEEGDFGDPWSRIPFTFWARYHQNARS FGDPWSRIPFTFWARYHQNARSRFPQTFAG R I P A R Y 1 1 0 0 0 0 0 0 0 1 0 0 0 2 1 0 1 1 0 0 0 0 8 0 1036.5494 Q9Y5V3 Q9Y5V3 730 737 MAGED1 Melanoma-associated antigen D1 yes yes 2 0.030963 77.674 By MS/MS 2 0 1 1 1979800 0 1979800 0 6354 2303 6625 27020 22840 22840 1 0 891520 0 IPGGLSEAK ______________________________ ______________________________ M I P A K P 1 0 0 0 0 0 1 2 0 1 1 1 0 0 1 1 0 0 0 0 0 0 9 0 870.48108 P01040 P01040 2 10 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2 0.0005969 116.37 By MS/MS 7.4 1.85 1 1 1 1 1 5 62121000 62121000 0 0 6355 374 6626 27021;27022;27023;27024;27025 22841;22842;22843 22843 3 91350000 0 0 IPGGLSEAKPATPEIQEIVDK ______________________________ EAKPATPEIQEIVDKVKPQLEEKTNETYGK M I P D K V 2 0 0 1 0 1 3 2 0 3 1 2 0 0 3 1 1 0 0 1 0 0 21 1 2191.1736 P01040 P01040 2 22 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 3 9.0126E-15 151.82 By MS/MS By MS/MS 4.79 2.81 2 2 1 2 2 1 1 1 1 1 10 4 502110000 483030000 0 19074000 6356 374 6627 27026;27027;27028;27029;27030;27031;27032;27033;27034;27035;27036;27037;27038;27039 22844;22845;22846;22847;22848;22849;22850;22851;22852;22853;22854;22855;22856;22857;22858;22859;22860 22844 17 501230000 0 3464600 IPGLLSPHPLLQLSYTATDR KVVEVLAGHGHLYSRIPGLLSPHPLLQLSY SPHPLLQLSYTATDRHPQALEAAQAELQQH R I P D R H 1 1 0 1 0 1 0 1 1 1 5 0 0 0 3 2 2 0 1 0 0 0 20 0 2191.2001 P49327 P49327 1256 1275 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 4.2733E-14 128.92 By MS/MS 1 0 1 1 7297200 0 0 7297200 6357 853 6628 27040 22861 22861 1 0 0 1572300 IPGMLIIDTPGHESFSNLR EQTKMIKNFDRENVRIPGMLIIDTPGHESF LIIDTPGHESFSNLRNRGSSLCDIAILVVD R I P L R N 0 1 1 1 0 0 1 2 1 3 2 0 1 1 2 2 1 0 0 0 0 0 19 0 2096.0725 O60841 O60841 695 713 EIF5B Eukaryotic translation initiation factor 5B yes yes 2;3 7.341E-65 230.14 By MS/MS By MS/MS 2 0.953 4 4 2 1 4 7 209270000 0 43305000 165970000 6358 236 6629;6630 27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051 22862;22863;22864;22865;22866;22867;22868;22869;22870;22871 22866 97 10 0 19601000 36247000 IPGNWFQMVSAQER PSIATIGSTCDLNLKIPGNWFQMVSAQERL KIPGNWFQMVSAQERLTRTFTRSSHTYTRT K I P E R L 1 1 1 0 0 2 1 1 0 1 0 0 1 1 1 1 0 1 0 1 0 0 14 0 1661.7984 Q14315 Q14315 2160 2173 FLNC Filamin-C yes yes 2 0.00051994 119.45 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 9331000 0 5463400 3867600 6359 1298 6631 27052;27053;27054 22872;22873 22872 2 0 2594800 833340 IPHEPVINSSNVHVGSR PFSSELISSVSQQERIPHEPVINSSNVHVG HEPVINSSNVHVGSRGSKKNYQSQADIPIR R I P S R G 0 1 2 0 0 0 1 1 2 2 0 0 0 0 2 3 0 0 0 3 0 0 17 0 1840.9544 Q14966 Q14966 351 367 ZNF638 Zinc finger protein 638 yes yes 3;4 0.0045688 59.252 By MS/MS 1.33 0.471 2 1 3 54223000 0 0 54223000 6360 1324 6632 27055;27056;27057 22874;22875 22875 2 0 0 11800000 IPIEDGSGEVVLSR QDGEQRISLPESLKRIPIEDGSGEVVLSRK RIPIEDGSGEVVLSRKVLLDGVQNPRAEDL R I P S R K 0 1 0 1 0 0 2 2 0 2 1 0 0 0 1 2 0 0 0 2 0 0 14 0 1469.7726 P01024 P01024 291 304 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.00039308 140.24 By MS/MS By matching 9.5 0.5 1 1 1 1 11175000 10658000 517450 0 6361 371 6633 27058;27059 22876;22877 22877 2 5982300 2617900 0 IPIEDKDLINTANWR EAFVEENAFNVEILRIPIEDKDLINTANWR IPIEDKDLINTANWRVNFTILKGNENGHFK R I P W R V 1 1 2 2 0 0 1 0 0 3 1 1 0 0 1 0 1 1 0 0 0 0 15 1 1796.9421 Q14574 Q14574 376 390 DSC3 Desmocollin-3 yes yes 3 2.6257E-09 96.303 By MS/MS 9 0 1 1 0 0 0 0 6362 1306 6634 27060 22878 22878 1 0 0 0 IPIGFIPLGETSSLSHTLFAESGNK VTGVLRRTDEATFSKIPIGFIPLGETSSLS TSSLSHTLFAESGNKVQHITDATLAIVKGE K I P N K V 1 0 1 0 0 0 2 3 1 3 3 1 0 2 2 4 2 0 0 0 0 0 25 0 2614.3643 Q53H12 Q53H12 147 171 AGK Acylglycerol kinase, mitochondrial yes yes 3;4 1.1271E-28 146.34 By matching By MS/MS 4.67 0.471 1 2 1 2 15558000 0 2488400 13070000 6363 1427 6635 27061;27062;27063 22879;22880 22879 1 0 825820 1823000 IPILLIQQPGK LVPGSQLILGPHESKIPILLIQQPGKVTGE HESKIPILLIQQPGKVTGEDRLGWGSGWDV K I P G K V 0 0 0 0 0 2 0 1 0 3 2 1 0 0 2 0 0 0 0 0 0 0 11 0 1218.77 Q99575 Q99575 595 605 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 2 0.0005201 119.27 By MS/MS 2.5 0.5 1 1 2 7500900 0 0 7500900 6364 1851 6636 27064;27065 22881 22881 1 0 0 1654600 IPLGLDLK GTNPGTEDIQFPIQKIPLGLDLKNLRLPRR IQFPIQKIPLGLDLKNLRLPRRKMSFDIID K I P L K N 0 0 0 1 0 0 0 1 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 867.54295 Q8IX01 Q8IX01 298 305 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 2 0.02996 77.923 By MS/MS 2 0 1 1 2011700 0 2011700 0 6365 1578 6637 27066 22882 22882 1 0 905920 0 IPLLLTSLSFK KKWLEVEIAPDIRGRIPLLLTSLSFKVLKH IRGRIPLLLTSLSFKVLKHPDKKFRVGQAL R I P F K V 0 0 0 0 0 0 0 0 0 1 4 1 0 1 1 2 1 0 0 0 0 0 11 0 1230.7588 Q14690 Q14690 1178 1188 PDCD11 Protein RRP5 homolog yes yes 2 1.2087E-09 168.8 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 40645000 343130 16784000 23518000 6366 1314 6638 27067;27068;27069;27070;27071;27072 22883;22884;22885;22886;22887 22886 4 343130 8092900 5058100 IPLLSDLTHQISK WINTPRRQGGLGPIRIPLLSDLTHQISKDY IRIPLLSDLTHQISKDYGVYLEDSGHTLRG R I P S K D 0 0 0 1 0 1 0 0 1 2 3 1 0 0 1 2 1 0 0 0 0 0 13 0 1463.8348 Q13162 Q13162 174 186 PRDX4 Peroxiredoxin-4 yes yes 2;3 0.00041051 124.42 By MS/MS By MS/MS 7.44 0.831 1 4 3 1 3 6 167080000 0 26230000 140850000 6367 1227 6639 27073;27074;27075;27076;27077;27078;27079;27080;27081 22888;22889;22890;22891;22892;22893;22894 22893 7 0 13293000 24011000 IPLNDLFR EDKGILTVDELLAIRIPLNDLFRCNSLSTL DELLAIRIPLNDLFRCNSLSTLEKNDVVQH R I P F R C 0 1 1 1 0 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 8 0 986.55492 P13473 P13473 145 152 LAMP2 Lysosome-associated membrane glycoprotein 2 yes yes 2 0.00066657 126.67 By MS/MS By MS/MS By MS/MS 4.12 3.06 1 3 1 1 1 1 3 1 4 15584000 6493100 1958900 7131700 6368 545 6640 27082;27083;27084;27085;27086;27087;27088;27089 22895;22896;22897;22898 22898 4 6793900 882110 1989900 IPLPGAEMLEEEPLYVNAK VMMVPGAGSVPAIQRIPLPGAEMLEEEPLY GAEMLEEEPLYVNAKQYHRILKRRQARAKL R I P A K Q 2 0 1 0 0 0 4 1 0 1 3 1 1 0 3 0 0 0 1 1 0 0 19 0 2112.0813 P23511 P23511 252 270 NFYA Nuclear transcription factor Y subunit alpha yes yes 2;3 1.0658E-16 175.74 By MS/MS 5 0 2 2 24679000 0 0 24679000 6369 642 6641 27090;27091 22899;22900;22901 22899 3 0 0 3442300 IPLVPENLLK SSCTTRKMAEQEQRKIPLVPENLLKKRKAY QEQRKIPLVPENLLKKRKAYQALKATQAKQ K I P L K K 0 0 1 0 0 0 1 0 0 1 3 1 0 0 2 0 0 0 0 1 0 0 10 0 1134.7012 Q6DKI1 Q6DKI1 18 27 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2 0.0056036 96.624 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 20643000 0 6907600 13735000 6370 1471 6642 27092;27093;27094;27095 22902;22903 22903 1 0 3078900 2183500 IPMSKMMTILGAK FSQFMRPLIAKKNPKIPMSKMMTILGAKWR PKIPMSKMMTILGAKWREFSANNPFKGSAA K I P A K W 1 0 0 0 0 0 0 1 0 2 1 2 3 0 1 1 1 0 0 0 0 0 13 1 1419.7652 Q12873 Q12873 180 192 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.021267 82.831 By matching By MS/MS 3.33 0.471 2 1 1 2 47341000 708460 0 46633000 6371 1205 6643 27096;27097;27098 22904 22904 568;569 1 817410 0 8732800 IPNFDVR LINGAEGIGTGWSCKIPNFDVREIVNNIRR IGTGWSCKIPNFDVREIVNNIRRLMDGEEP K I P V R E 0 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 7 0 859.4552 P11388 P11388 864 870 TOP2A DNA topoisomerase 2-alpha yes yes 1;2 0.018766 130.04 By MS/MS 1.33 0.471 2 1 3 115020000 0 0 115020000 6372 524 6644 27099;27100;27101 22905;22906;22907 22905 2 0 0 24782000 IPNFLHLTPVAIK KGVPMAKEGNLELLKIPNFLHLTPVAIKKH LKIPNFLHLTPVAIKKHCEALKDFCTEWPA K I P I K K 1 0 1 0 0 0 0 0 1 2 2 1 0 1 2 0 1 0 0 1 0 0 13 0 1461.8708 P82673 P82673 108 120 MRPS35 28S ribosomal protein S35, mitochondrial yes yes 3 0.027118 54.343 By matching By MS/MS 5.67 0.471 1 2 1 2 8587500 0 962430 7625100 6373 1098 6645 27102;27103;27104 22908;22909 22908 2 0 333160 1126300 IPPPPPAPYGPGIFPPPPPQP GFVPPPPPPPYGPGRIPPPPPAPYGPGIFP APYGPGIFPPPPPQP_______________ R I P Q P - 1 0 0 0 0 1 0 2 0 2 0 0 0 1 13 0 0 0 1 0 0 0 21 0 2129.135 P02814 P02814 59 79 SMR3B Submaxillary gland androgen-regulated protein 3B;Peptide P-A;Peptide D1A yes yes 3 0.0042815 49.606 By MS/MS By matching 7.5 3.77 1 1 2 3 1 6047400 5393700 653650 0 6374 404 6646 27105;27106;27107;27108 22910;22911;22912;22913;22914 22911 5 4940200 3306900 0 IPPPVIMVQNVSFK VSDKTLSFYFPPCGKIPPPVIMVQNVSFKY KIPPPVIMVQNVSFKYTKDGPCIYNNLEFG K I P F K Y 0 0 1 0 0 1 0 0 0 2 0 1 1 1 3 1 0 0 0 3 0 0 14 0 1567.8796 Q9UG63 Q9UG63 391 404 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2;3 4.8062E-05 160.18 By MS/MS By MS/MS 3 0 3 2 1 34541000 0 17660000 16882000 6375 2142 6647 27109;27110;27111 22915;22916;22917 22916 3 0 7528300 3274200 IPPTPFSAPPPAGAMIPPPPSLPGPPR QSLIDKTTAAFQQGKIPPTPFSAPPPAGAM GAMIPPPPSLPGPPRPGMMPAPHMGGPPMM K I P P R P 3 1 0 0 0 0 0 2 0 2 1 0 1 1 13 2 1 0 0 0 0 0 27 0 2655.4247 P09234 P09234 62 88 SNRPC U1 small nuclear ribonucleoprotein C yes yes 3 0.0016813 38.78 By MS/MS 7 0 1 1 2430600 0 2430600 0 6376 483 6648 27112 22918;22919 22919 2 0 1395700 0 IPQAIAQLSK DWETKNFDFEDVFVKIPQAIAQLSKEAGVE DVFVKIPQAIAQLSKEAGVEKFIHVSHLNA K I P S K E 2 0 0 0 0 2 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 0 10 0 1067.6339 Q16795 Q16795 148 157 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2 0.00023343 141.02 By MS/MS By MS/MS 6 0 2 1 1 24900000 0 6635500 18264000 6377 1400 6649 27113;27114 22920;22921 22921 2 0 2297000 2732500 IPQDRPTSEELLK WSDYFRNFVDSCLQKIPQDRPTSEELLKHI QKIPQDRPTSEELLKHIFVLRERPETVLID K I P L K H 0 1 0 1 0 1 2 0 0 1 2 1 0 0 2 1 1 0 0 0 0 0 13 1 1524.8148 Q7L7X3 Q7L7X3 265 277 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 3 0.048826 48.532 By matching By MS/MS 2 0 2 1 1 16021000 1406500 0 14615000 6378 1526 6650 27115;27116 22922 22922 1 1694600 0 3302700 IPQLLLER VVVISGDTGCGKTTRIPQLLLERYVTEGRG GCGKTTRIPQLLLERYVTEGRGARCNVIIT R I P E R Y 0 1 0 0 0 1 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 0 980.60187 Q7L2E3 Q7L2E3 467 474 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.0011862 119.29 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 58380000 0 19158000 39222000 6379 1522 6651 27117;27118;27119;27120;27121 22923;22924;22925 22925 3 0 8684700 8637900 IPQNPSPHTHQQQNAPVTVIQSK FPVQGVHTVAQTVSRIPQNPSPHTHQQQNA THQQQNAPVTVIQSKAPIPCEVVKATVIQN R I P S K A 1 0 2 0 0 5 0 0 2 2 0 1 0 0 4 2 2 0 0 2 0 0 23 0 2548.3146 Q68CP9 Q68CP9 684 706 ARID2 AT-rich interactive domain-containing protein 2 yes yes 4 0.0059234 42.384 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 28475000 0 4751100 23724000 6380 1467 6652 27122;27123;27124 22926;22927;22928 22927 3 0 2322300 5191700 IPQQNSESAMAKPQVVVAPVLMSK EQTRPLRAPPSSQDKIPQQNSESAMAKPQV MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS K I P S K L 3 0 1 0 0 3 1 0 0 1 1 2 2 0 3 3 0 0 0 4 0 0 24 1 2551.3502 Q9H074 Q9H074 104 127 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes yes 3 0.020068 33.614 By MS/MS 4.5 0.5 1 1 2 4840800 0 4840800 0 6381 1957 6653 27125;27126 22929 22929 1 0 1501100 0 IPSAVGYQPTLATDMGTMQER RFTQAGSEVSALLGRIPSAVGYQPTLATDM YQPTLATDMGTMQERITTTKKGSITSVQAI R I P E R I 2 1 0 1 0 2 1 2 0 1 1 0 2 0 2 1 3 0 1 1 0 0 21 0 2265.077 P06576 P06576 325 345 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2;3 1.2353E-13 135.72 By MS/MS By MS/MS 4.67 0.745 3 2 1 1 5 32870000 21281000 11589000 0 6382 444 6654;6655 27127;27128;27129;27130;27131;27132 22930;22931;22932 22931 161;162 3 16603000 3593000 0 IPSPLGYAAIPIK VARRRKCAARDPEDRIPSPLGYAAIPIKFS DRIPSPLGYAAIPIKFSEKQQASHYLYVRA R I P I K F 2 0 0 0 0 0 0 1 0 3 1 1 0 0 3 1 0 0 1 0 0 0 13 0 1338.7911 Q9Y3A4 Q9Y3A4 17 29 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2 0.00081318 117.02 By matching By MS/MS By MS/MS 6 0 3 1 1 1 30645000 1744200 5826400 23075000 6383 2262 6656 27133;27134;27135 22933;22934;22935 22933 3 2322400 2016900 3452200 IPSVLFLGK VKIDKPYLLLIYSEKIPSVLFLGKIVNPIG LIYSEKIPSVLFLGKIVNPIGK________ K I P G K I 0 0 0 0 0 0 0 1 0 1 2 1 0 1 1 1 0 0 0 1 0 0 9 0 972.6008 Q8IW75 Q8IW75 399 407 SERPINA12 Serpin A12 yes yes 2 1.6483E-05 151.56 By MS/MS By matching 5.56 3.24 1 1 1 1 1 1 1 2 7 2 42207000 40496000 0 1711500 6384 1573 6657 27136;27137;27138;27139;27140;27141;27142;27143;27144 22936;22937 22937 2 34534000 0 2316400 IPTAGIYGASYVPFAAPATATIATLQK RPITPVYTVAPNVQRIPTAGIYGASYVPFA PFAAPATATIATLQKNAAAAAAMYGGYAGY R I P Q K N 7 0 0 0 0 1 0 2 0 3 1 1 0 1 3 1 4 0 2 1 0 0 27 0 2692.4476 A0AV96 A0AV96 531 557 RBM47 RNA-binding protein 47 yes yes 3 6.8139E-08 69.248 By MS/MS 3.5 0.5 1 1 2 4938600 0 4938600 0 6385 8 6658 27145;27146 22938;22939 22939 2 0 1803600 0 IPTAKPELFAYPLDWSIVDSILMER NTEEKRKHIKSLIEKIPTAKPELFAYPLDW YPLDWSIVDSILMERRIRPWINKKIIEYIG K I P E R R 2 1 0 2 0 0 2 0 0 3 3 1 1 1 3 2 1 1 1 1 0 0 25 1 2903.5143 P49756 P49756 745 769 RBM25 RNA-binding protein 25 yes yes 3;4 9.1524E-25 121.58 By MS/MS 1.75 0.433 1 3 4 42291000 0 0 42291000 6386 866 6659;6660 27147;27148;27149;27150 22940;22941;22942 22941 418 3 0 0 9549000 IPTHLFTFIQFK STKQAAFKAVSEVCRIPTHLFTFIQFKKDL VCRIPTHLFTFIQFKKDLKESMKCGMWGRA R I P F K K 0 0 0 0 0 1 0 0 1 2 1 1 0 3 1 0 2 0 0 0 0 0 12 0 1490.8286 P10155 P10155 121 132 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 3 0.001205 99.752 By MS/MS By MS/MS 4 0 2 1 1 5556100 0 1029800 4526200 6387 507 6661 27151;27152 22943;22944 22944 2 0 341760 739280 IPTTFENGR FDVNKYLGRWYEIEKIPTTFENGRCIQANY WYEIEKIPTTFENGRCIQANYSLMENGKIK K I P G R C 0 1 1 0 0 0 1 1 0 1 0 0 0 1 1 0 2 0 0 0 0 0 9 0 1033.5193 P05090 P05090 52 60 APOD Apolipoprotein D yes yes 2 0.019656 82.452 By MS/MS 4.33 4.03 1 1 1 3 34816000 34816000 0 0 6388 423 6662 27153;27154;27155 22945;22946 22945 1 47344000 0 0 IPVDTYNNILTVLK ATSSAVSKELTRLLKIPVDTYNNILTVLKL KIPVDTYNNILTVLKLKHFHPLFEYFDYES K I P L K L 0 0 2 1 0 0 0 0 0 2 2 1 0 0 1 0 2 0 1 2 0 0 14 0 1601.9029 Q96QK1 Q96QK1 404 417 VPS35 Vacuolar protein sorting-associated protein 35 yes yes 2 0.00044287 134.99 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 2 4 18894000 0 5439200 13455000 6389 1827 6663 27156;27157;27158;27159;27160;27161 22947;22948 22947 2 0 2338000 2583600 IPVIIER RVEDVRLIREQHPTKIPVIIERYKGEKQLP IREQHPTKIPVIIERYKGEKQLPVLDKTKF K I P E R Y 0 1 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 1 0 0 7 0 838.52764 A6NCE7;Q9GZQ8;Q9H492 A6NCE7 31 37 MAP1LC3B2;MAP1LC3B;MAP1LC3A Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3A yes no 2 0.0078419 123.99 By MS/MS By MS/MS 8.67 0.471 1 2 1 2 34425000 0 3642200 30783000 6390 11 6664 27162;27163;27164 22949;22950 22950 2 0 2916500 6632100 IPVSGPFLVK NAAPSDLESIFKDAKIPVSGPFLVKTGYAF FKDAKIPVSGPFLVKTGYAFVDCPDESWAL K I P V K T 0 0 0 0 0 0 0 1 0 1 1 1 0 1 2 1 0 0 0 2 0 0 10 0 1055.6379 O00425 O00425 27 36 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 0.00045143 127.02 By MS/MS By MS/MS 5 1.6 2 1 1 1 2 5 2 70743000 0 40413000 30329000 6391 121 6665 27165;27166;27167;27168;27169;27170;27171 22951;22952;22953;22954 22951 4 0 15656000 5849000 IPWFQYPIIYDIR GVQQDTILAEGLHFRIPWFQYPIIYDIRAR FRIPWFQYPIIYDIRARPRKISSPTGSKDL R I P I R A 0 1 0 1 0 1 0 0 0 4 0 0 0 1 2 0 0 1 2 0 0 0 13 0 1722.9134 Q99623 Q99623 72 84 PHB2 Prohibitin-2 yes yes 2 0.0024263 107.55 By matching By MS/MS 6 0 2 1 1 4826200 0 1276500 3549700 6392 1855 6666 27172;27173 22955 22955 1 0 441880 531070 IPWTAASSQLK ALRRSINQPVAFVRRIPWTAASSQLKEHFA FVRRIPWTAASSQLKEHFAQFGHVRRCILP R I P L K E 2 0 0 0 0 1 0 0 0 1 1 1 0 0 1 2 1 1 0 0 0 0 11 0 1200.6503 Q9GZT3 Q9GZT3 26 36 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes yes 2 0.022614 82.749 By MS/MS By MS/MS 9 0 2 1 1 2835100 0 2835100 0 6393 1955 6667 27174;27175 22956;22957 22956 2 0 2270200 0 IPYLPITNFNQNWQDGK KQTPKQRLLGWIQNKIPYLPITNFNQNWQD YLPITNFNQNWQDGKALGALVDSCAPGLCP K I P G K A 0 0 3 1 0 2 0 1 0 2 1 1 0 1 2 0 1 1 1 0 0 0 17 0 2047.0163 O75369 O75369 153 169 FLNB Filamin-B yes yes 2 7.58E-06 147.24 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 9199100 0 4464300 4734800 6394 254 6668 27176;27177;27178 22958;22959 22959 2 0 2123900 1020200 IPYTTVLR YPTFLHLHGKTFDYKIPYTTVLRLFLLPHK GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV K I P L R L 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 1 1 0 0 8 0 961.55967 Q08945 Q08945 234 241 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.00027179 134.12 By MS/MS By MS/MS 4.67 2.72 1 2 2 2 1 1 1 1 1 4 8 307520000 0 79559000 227960000 6395 1186 6669 27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190 22960;22961;22962;22963;22964;22965;22966;22967;22968 22966 8 0 41313000 47995000 IQAEHASHGDREEIMR SASILDKEINRLRQKIQAEHASHGDREEIM QAEHASHGDREEIMRQYQEARETYLDLDSK K I Q M R Q 2 2 0 1 0 1 3 1 2 2 0 0 1 0 0 1 0 0 0 0 0 0 16 1 1877.8802 Q96SB8 Q96SB8 878 893 SMC6 Structural maintenance of chromosomes protein 6 yes yes 3;4 0.00656 58.159 By MS/MS 1.5 0.5 2 2 4 10034000 0 0 10034000 6396 1833 6670 27191;27192;27193;27194 22969;22970;22971 22969 3 0 0 2231600 IQAEVEAQLAR QEEEERKKREDDEKRIQAEVEAQLARQKEE DEKRIQAEVEAQLARQKEEESQQQAVLEQE R I Q A R Q 3 1 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1226.6619 Q9UM54 Q9UM54 981 991 MYO6 Unconventional myosin-VI yes yes 2 1.1867E-09 168.9 By MS/MS 2 0 1 1 5161100 0 5161100 0 6397 2198 6671 27195 22972 22972 1 0 2324100 0 IQAGEIGEMK QTFDRRSRVLPHPNRIQAGEIGEMKDGVPE PHPNRIQAGEIGEMKDGVPEGAQLQGPVHR R I Q M K D 1 0 0 0 0 1 2 2 0 2 0 1 1 0 0 0 0 0 0 0 0 0 10 0 1074.5379 P16989 P16989 259 268 YBX3 Y-box-binding protein 3 yes yes 2 0.0064959 94.692 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 39091000 0 18770000 20320000 6398 581 6672 27196;27197;27198 22973;22974 22973 2 0 5909100 3319000 IQAIAWAR VLVPGGFGVRGTEGKIQAIAWARNQKKPFL VRGTEGKIQAIAWARNQKKPFLGVCLGMQL K I Q A R N 3 1 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 8 0 927.52904 P17812 P17812 382 389 CTPS1 CTP synthase 1 yes yes 2 0.00015233 143.37 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 9913400 0 3574400 6339000 6399 587 6673 27199;27200;27201 22975;22976 22976 2 0 1523800 1193900 IQALQQQADEAEDR ______________________________ KIQALQQQADEAEDRAQGLQRELDGERERR K I Q D R A 3 1 0 2 0 4 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 14 0 1613.7645 P67936 P67936 14 27 TPM4 Tropomyosin alpha-4 chain yes yes 2 0.00062455 142.07 By matching By MS/MS 5.5 0.5 1 1 1 1 17386000 0 7943400 9442300 6400 1074 6674 27202;27203 22977 22977 1 0 2047600 1412700 IQAQLALKPGLIGNANMVGLANLHAMGIAPPK DAIEKARKAAELQARIQAQLALKPGLIGNA VGLANLHAMGIAPPKVELKDQTKPTPLILD R I Q P K V 6 0 3 0 0 2 0 4 1 3 5 2 2 0 3 0 0 0 0 1 0 0 32 1 3220.7941 O43395 O43395 213 244 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 4 0.00054644 38.691 By MS/MS 3 0 1 1 6350400 0 0 6350400 6401 196 6675 27204 22978 22978 1 0 0 1231700 IQDIVGILR EQDAQAPDLQRVHKRIQDIVGILRDFGAQR QRVHKRIQDIVGILRDFGAQREEGRSRSEY R I Q L R D 0 1 0 1 0 1 0 1 0 3 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1025.6233 P46087 P46087 243 251 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 2.855E-23 186.13 By MS/MS By MS/MS By MS/MS 2.75 1.2 1 3 2 1 1 2 3 3 87164000 4997500 40321000 41846000 6402 824 6676 27205;27206;27207;27208;27209;27210;27211;27212 22979;22980;22981;22982 22982 4 5948600 17636000 9263800 IQDKEGIPPDQQR LEVEPSDTIENVKAKIQDKEGIPPDQQRLI AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS K I Q Q R L 0 1 0 2 0 3 1 1 0 2 0 1 0 0 2 0 0 0 0 0 0 0 13 1 1522.774 P62987;P62979;P0CG47;P0CG48 P62987 30 42 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2;3 9.9249E-24 199.43 By MS/MS By MS/MS By MS/MS 6.12 2.79 5 3 3 1 4 6 15 1 3 8 15 13 21 1294300000 43559000 113390000 1137400000 6403 500 6677 27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260;27261 22983;22984;22985;22986;22987;22988;22989;22990;22991;22992;22993;22994;22995;22996;22997;22998;22999;23000;23001;23002;23003;23004;23005;23006;23007;23008;23009;23010;23011;23012;23013;23014;23015;23016;23017;23018;23019;23020;23021;23022;23023;23024;23025;23026;23027;23028;23029;23030;23031;23032;23033;23034;23035;23036;23037;23038;23039;23040;23041;23042;23043;23044 23026 62 44162000 125360000 287110000 IQDLSLLYQLFSR AILQKGLNNLLDENRIQDLSLLYQLFSRVR NRIQDLSLLYQLFSRVRGGVQVLLQQWIEY R I Q S R V 0 1 0 1 0 2 0 0 0 1 4 0 0 1 0 2 0 0 1 0 0 0 13 0 1594.8719 Q13620 Q13620 470 482 CUL4B Cullin-4B yes yes 2 0.0011186 113.22 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 4161800 0 616210 3545600 6404 1264 6678 27262;27263 23045;23046 23046 2 0 277490 687670 IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK LEISDLNELLKKTLKIQDVGLVPMGGVMSG AAAQEAVEEDIPIAKERTHFTVRLTEAKPV K I Q A K E 7 0 0 2 0 2 3 4 0 3 1 1 2 0 3 1 0 0 0 5 0 0 34 0 3332.6996 P52815 P52815 92 125 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 3 5.8806E-07 49.038 By MS/MS 8 0 2 2 34075000 0 0 34075000 6405 913 6679;6680 27264;27265 23047;23048 23048 450;451 2 0 0 5224000 IQDWYDK KVQALEEANNDLENKIQDWYDKKGPAAIQK ANNDLENKIQDWYDKKGPAAIQKNYSPYYN K I Q D K K 0 0 0 2 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 0 7 0 966.4447 P35527;CON__P35527 P35527 185 191 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.021328 100.19 By MS/MS 7.33 2.49 1 1 1 3 349960000 349960000 0 0 + 6406 750 6681 27266;27267;27268 23049;23050;23051 23049 3 332350000 0 0 IQDWYDKK KVQALEEANNDLENKIQDWYDKKGPAAIQK NNDLENKIQDWYDKKGPAAIQKNYSPYYNT K I Q K K G 0 0 0 2 0 1 0 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 8 1 1094.5397 P35527;CON__P35527 P35527 185 192 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.0004387 135.77 By MS/MS By MS/MS 5.92 2.81 1 1 1 1 1 1 2 1 2 1 5 7 1328200000 996210000 0 331980000 + 6407 750 6682 27269;27270;27271;27272;27273;27274;27275;27276;27277;27278;27279;27280 23052;23053;23054;23055;23056;23057;23058;23059;23060;23061;23062;23063 23060 11 966970000 0 60870000 IQEEGTEVELTGK LKRQEFEMKIEVEAKIQEEGTEVELTGKGA AKIQEEGTEVELTGKGATEITTTITKLSFV K I Q G K G 0 0 0 0 0 1 4 2 0 1 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1431.7093 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 326 338 yes yes 2 0.00023345 147.37 By MS/MS By matching By MS/MS 5.91 2.87 1 2 1 2 2 2 1 5 1 5 106490000 67170000 5808700 33509000 + 6408 28 6683 27281;27282;27283;27284;27285;27286;27287;27288;27289;27290;27291 23064;23065;23066;23067;23068;23069;23070 23066 7 66776000 2476200 15081000 IQEELSALR EAALKEDFRRETAARIQEELSALRAEHQQD RETAARIQEELSALRAEHQQDSEDLFKKIV R I Q L R A 1 1 0 0 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1057.5768 Q9UH99 Q9UH99 355 363 SUN2 SUN domain-containing protein 2 yes yes 2 0.00050384 124.98 By MS/MS By MS/MS 3 0 2 1 1 20477000 0 7381300 13095000 6409 2148 6684 27292;27293 23071;23072 23072 2 0 3146700 2539900 IQELAHELAAAK TLASVQELLIQQQQKIQELAHELAAAKATT QQKIQELAHELAAAKATTSTNWILESQNIN K I Q A K A 4 0 0 0 0 1 2 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 12 0 1292.7089 O75381 O75381 184 195 PEX14 Peroxisomal membrane protein PEX14 yes yes 3 0.062492 40.287 By MS/MS 5 0 1 1 2959500 0 2959500 0 6410 255 6685 27294 23073 23073 1 0 762860 0 IQELEDLLAK QLSNLQKESRACLERIQELEDLLAKEKDNS ACLERIQELEDLLAKEKDNSRRMLTDKERE R I Q A K E 1 0 0 1 0 1 2 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1170.6496 P20700 P20700 321 330 LMNB1 Lamin-B1 yes yes 2 8.4518E-11 166.16 By MS/MS By MS/MS By MS/MS 2.17 0.898 2 1 3 1 2 3 428420000 22910000 45916000 359590000 6411 619 6686 27295;27296;27297;27298;27299;27300 23074;23075;23076;23077;23078;23079;23080;23081 23080 8 26433000 20012000 71314000 IQELEHQR ELAQTKLQLVEAKCKIQELEHQRGALMNEI LVEAKCKIQELEHQRGALMNEIQAAKNSWF K I Q Q R G 0 1 0 0 0 2 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 8 0 1051.5411 B7ZAP0 B7ZAP0 202 209 RABGAP1L Rab GTPase-activating protein 1-like, isoform 10 yes yes 2 0.026045 79.597 By MS/MS 4 0 1 1 466410000 0 0 466410000 6412 22 6687 27301 23082 23082 1 0 0 76180000 IQELENLPGSLAGDLR LQEREYRLQARIAHRIQELENLPGSLAGDL QELENLPGSLAGDLRTKATIELKALRLLNF R I Q L R T 1 1 1 1 0 1 2 2 0 1 4 0 0 0 1 1 0 0 0 0 0 0 16 0 1723.9105 P51532 P51532 382 397 SMARCA4 Transcription activator BRG1 yes yes 2 1.8932E-05 151.7 By MS/MS By MS/MS 1 0 2 1 1 8944100 0 3022400 5921700 6413 894 6688 27302;27303 23083;23084 23084 2 0 1477300 1275900 IQELFHVEPGLQR DSLSRLTKVEELRRKIQELFHVEPGLQRLF RKIQELFHVEPGLQRLFYRGKQMEDGHTLF K I Q Q R L 0 1 0 0 0 2 2 1 1 1 2 0 0 1 1 0 0 0 0 1 0 0 13 0 1564.8362 Q96T88 Q96T88 32 44 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 3 0.0090777 68.809 By MS/MS 2 0.816 1 1 1 3 26405000 0 0 26405000 6414 1841 6689 27304;27305;27306 23085;23086 23086 2 0 0 5604800 IQEQVQQTLAR AGSSGRGGQTVKSLRIQEQVQQTLARKGRS KSLRIQEQVQQTLARKGRSSVGNGNLHRTS R I Q A R K 1 1 0 0 0 4 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1312.7099 Q99959 Q99959 56 66 PKP2 Plakophilin-2 yes yes 2 2.3543E-13 175.93 By MS/MS By MS/MS 4.5 1.71 1 1 1 1 1 1 1 5 321360000 0 6890500 314470000 6415 1870 6690 27307;27308;27309;27310;27311;27312 23087;23088;23089 23087 3 0 3102900 50824000 IQFKPDDGISPER NGEMIKKIQNDAGVRIQFKPDDGISPERAA VRIQFKPDDGISPERAAQVMGPPDRCQHAA R I Q E R A 0 1 0 2 0 1 1 1 0 2 0 1 0 1 2 1 0 0 0 0 0 0 13 1 1500.7573 Q96I24 Q96I24 287 299 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 8.2952E-07 171.85 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 48249000 0 3627300 44621000 6416 1797 6691 27313;27314;27315;27316 23090;23091;23092 23091 3 0 1546300 8467300 IQFKPDDGTTPER NGEMIKKIQNDAGVRIQFKPDDGTTPERIA VRIQFKPDDGTTPERIAQITGPPDRCQHAA R I Q E R I 0 1 0 2 0 1 1 1 0 1 0 1 0 1 2 0 2 0 0 0 0 0 13 1 1502.7365 Q96AE4 Q96AE4 309 321 FUBP1 Far upstream element-binding protein 1 yes yes 3 0.022312 60.364 By MS/MS By MS/MS 2.75 1.09 1 2 1 1 3 28488000 0 4740900 23748000 6417 1750 6692 27317;27318;27319;27320 23093;23094 23094 2 0 2021000 4624500 IQGLTVEQAEAVVR LRGNEIVLSAGSTPRIQGLTVEQAEAVVRL RIQGLTVEQAEAVVRLSCLPAFKDLIAKVQ R I Q V R L 2 1 0 0 0 2 2 1 0 1 1 0 0 0 0 0 1 0 0 3 0 0 14 0 1511.8308 Q14204 Q14204 3924 3937 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00049233 120.06 By MS/MS By matching 1.5 0.5 1 1 1 1 6483700 0 3913500 2570200 6418 1292 6693 27321;27322 23095 23095 1 0 1912900 580810 IQIEAIPLALQGR LCEACDQLGWTKPTKIQIEAIPLALQGRDI TKIQIEAIPLALQGRDIIGLAETGSGKTGA K I Q G R D 2 1 0 0 0 2 1 1 0 3 2 0 0 0 1 0 0 0 0 0 0 0 13 0 1420.8402 Q9H0S4 Q9H0S4 50 62 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.00031482 129.28 By MS/MS By MS/MS 4.2 0.748 1 2 2 3 2 95385000 0 54331000 41054000 6419 1964 6694 27323;27324;27325;27326;27327 23096;23097;23098;23099 23096 4 0 15591000 6193200 IQINQEEER ILDDTEDTVVSQRKKIQINQEEERLKNERT VSQRKKIQINQEEERLKNERTVFVGNLPVT K I Q E R L 0 1 1 0 0 2 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1157.5677 P42696 P42696 172 180 RBM34 RNA-binding protein 34 yes yes 2 2.2606E-87 201.97 By MS/MS 4 0 1 1 0 0 0 0 6420 807 6695 27328 23100 23100 1 0 0 0 IQLFLAR LRRLSKSQNTVFCGRIQLFLARLFPLSEKS QNTVFCGRIQLFLARLFPLSEKSGLNLQSQ R I Q A R L 1 1 0 0 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 7 0 859.52797 Q96FV9 Q96FV9 159 165 THOC1 THO complex subunit 1 yes yes 2 0.0029921 140.72 By matching By MS/MS By MS/MS 3 0 3 1 1 1 23952000 1523800 6308500 16119000 6421 1783 6696 27329;27330;27331 23101;23102 23102 2 1758200 2689300 3126400 IQLIFER QAYIDFEMKIGDPARIQLIFERALVENCLV MKIGDPARIQLIFERALVENCLVPDLWIRY R I Q E R A 0 1 0 0 0 1 1 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 7 0 917.53345 Q15020 Q15020 329 335 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 2 0.010108 120.65 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 11914000 0 7890100 4023900 6422 1331 6697 27332;27333;27334 23103;23104 23103 2 0 3504000 909330 IQLLDLPGIIEGAK TLTTVPGVIRYKGAKIQLLDLPGIIEGAKD KIQLLDLPGIIEGAKDGKGRGRQVIAVART K I Q A K D 1 0 0 1 0 1 1 2 0 3 3 1 0 0 1 0 0 0 0 0 0 0 14 0 1478.8708 Q9Y295 Q9Y295 113 126 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 2 0.00045658 120.86 By MS/MS 5.5 0.5 1 1 2 9734000 0 9734000 0 6423 2239 6698 27335;27336 23105;23106 23105 2 0 2808700 0 IQLLVFK AKLAGFLDLTEQEFRIQLLVFKHKMKNLVW DLTEQEFRIQLLVFKHKMKNLVWTSGISAL R I Q F K H 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 Q9Y262 Q9Y262 488 494 EIF3L Eukaryotic translation initiation factor 3 subunit L yes yes 2 0.026015 96.048 By MS/MS By MS/MS 3 1.22 1 1 2 1 3 7100300 0 2042300 5058100 6424 2233 6699 27337;27338;27339;27340 23107;23108 23107 2 0 677750 971900 IQLQIQETLQR GEFLHELEEKMEVARIQLQIQETLQRQYSH EVARIQLQIQETLQRQYSHHSSVQDAVSQL R I Q Q R Q 0 1 0 0 0 4 1 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 11 0 1368.7725 O75694 O75694 1153 1163 NUP155 Nuclear pore complex protein Nup155 yes yes 2 0.005653 99.688 By MS/MS 2 0 1 1 4641700 0 0 4641700 6425 281 6700 27341 23109 23109 1 0 0 1048900 IQLRSQCATWK KVGILHLGSRQKKIRIQLRSQCATWKVICK KKIRIQLRSQCATWKVICKSCISQTPGINL R I Q W K V 1 1 0 0 1 2 0 0 0 1 1 1 0 0 0 1 1 1 0 0 0 0 11 1 1389.7187 Q9HD64 Q9HD64 27 37 XAGE1A X antigen family member 1 yes yes 2;3 0.0057098 117.04 By MS/MS By MS/MS By MS/MS 2.29 0.881 1 4 1 1 1 3 3 270440000 52874000 65105000 152460000 6426 2017 6701 27342;27343;27344;27345;27346;27347;27348 23110;23111;23112;23113 23113 4 63706000 29466000 33330000 IQLVEEELDRAQER KATDAEADVASLNRRIQLVEEELDRAQERL RIQLVEEELDRAQERLATALQKLEEAEKAA R I Q E R L 1 2 0 1 0 2 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 14 1 1726.885 P06753;P09493;CON__Q3SX28;P07951;P67936 P09493 92 105 TPM3;TPM1;TPM2;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin beta chain;Tropomyosin alpha-4 chain no no 3 7.4201E-18 189.5 By MS/MS 6 0 1 1 20707000 0 20707000 0 + 6427 485;450;1074 6702 27349 23114 23114 1 0 7168200 0 IQNGAQGIR SCSADEVQRFFSDCKIQNGAQGIRFIYTRE FFSDCKIQNGAQGIRFIYTREGRPSGEAFV K I Q I R F 1 1 1 0 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 955.51993 P31943 P31943 36 44 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2 0.0023247 104.45 By MS/MS 4.5 0.5 1 1 2 1778700 0 1778700 0 6428 722 6703 27350;27351 23115 23115 1 0 471740 0 IQPGNPNYTLSLK SLKLTNGIWILAELRIQPGNPNYTLSLKCR LRIQPGNPNYTLSLKCRAPEVSQYIYQVYD R I Q L K C 0 0 2 0 0 1 0 1 0 1 2 1 0 0 2 1 1 0 1 0 0 0 13 0 1443.7722 P63010 P63010 905 917 AP2B1 AP-2 complex subunit beta yes yes 2 0.0018468 109.16 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 35506000 2778500 9506500 23221000 6429 1057 6704 27352;27353;27354;27355 23116;23117 23117 2 3347800 4280900 5131400 IQPGSQQADFLDALIVSMDVIQHETIGK LMLPDFDLLEDIESKIQPGSQQADFLDALI LIVSMDVIQHETIGKKFEKRHIEIFTDLSS K I Q G K K 2 0 0 3 0 4 1 2 1 4 2 1 1 1 1 2 1 0 0 2 0 0 28 0 3052.5539 P13010 P13010 98 125 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 2.438E-21 107.75 By MS/MS 3 0.816 1 1 1 3 194620000 0 0 194620000 6430 542 6705 27356;27357;27358 23118 23118 1 0 0 43173000 IQPGSQQADFLDALIVSMDVIQHETIGKK LMLPDFDLLEDIESKIQPGSQQADFLDALI IVSMDVIQHETIGKKFEKRHIEIFTDLSSR K I Q K K F 2 0 0 3 0 4 1 2 1 4 2 2 1 1 1 2 1 0 0 2 0 0 29 1 3180.6489 P13010 P13010 98 126 XRCC5 X-ray repair cross-complementing protein 5 yes yes 4 6.3036E-07 59.211 By MS/MS 3 0 1 1 2882900 0 0 2882900 6431 542 6706 27359 23119 23119 1 0 0 559150 IQPLEDIISAVWK REKVVEATNSVTAVRIQPLEDIISAVWKEN VRIQPLEDIISAVWKENMNLSEAQVQALAL R I Q W K E 1 0 0 1 0 1 1 0 0 3 1 1 0 0 1 1 0 1 0 1 0 0 13 0 1510.8395 P46100 P46100 2347 2359 ATRX Transcriptional regulator ATRX yes yes 2 0.03047 74.944 By MS/MS 1 0 1 1 1310000 0 0 1310000 6432 825 6707 27360 23120 23120 1 0 0 282270 IQPSGGTNINEALLR ATKTQVADAKNYIEKIQPSGGTNINEALLR IQPSGGTNINEALLRAIFILNEANNLGMLD K I Q L R A 1 1 2 0 0 1 1 2 0 2 2 0 0 0 1 1 1 0 0 0 0 0 15 0 1581.8475 CON__Q9TRI1;P19823 CON__Q9TRI1 380 394 ITIH2 Inter-alpha-trypsin inhibitor heavy chain H2 yes no 2 1.6638E-07 169.58 By MS/MS By MS/MS By MS/MS 5.75 3.37 1 1 2 3 2 3 6 2 4 96516000 39697000 10665000 46154000 + 6433 99 6708 27361;27362;27363;27364;27365;27366;27367;27368;27369;27370;27371;27372 23121;23122;23123;23124;23125;23126;23127;23128;23129;23130;23131 23131 11 40616000 29399000 33933000 IQPVHILTSVSSLR LERTEILNQEWKQRRIQPVHILTSVSSLRG RIQPVHILTSVSSLRGTRECSVTSDLDFPT R I Q L R G 0 1 0 0 0 1 0 0 1 2 2 0 0 0 1 3 1 0 0 2 0 0 14 0 1548.8988 Q15910 Q15910 65 78 EZH2 Histone-lysine N-methyltransferase EZH2 yes yes 3 0.033504 48.214 By MS/MS 2.5 0.5 1 1 2 12699000 0 0 12699000 6434 1383 6709 27373;27374 23132 23132 1 0 0 2582100 IQQEIAVQNPLVSER NCLAYDEAIMAQQDRIQQEIAVQNPLVSER IQQEIAVQNPLVSERLELSVLYKEYAEDDN R I Q E R L 1 1 1 0 0 3 2 0 0 2 1 0 0 0 1 1 0 0 0 2 0 0 15 0 1722.9264 Q96FW1 Q96FW1 37 51 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 2 1.8158E-34 210.79 By MS/MS 6 0 1 1 4210000 0 0 4210000 6435 1784 6710 27375 23133 23133 1 0 0 629850 IQQGALELLR YTYESKMAFLTRVAKIQQGALELLRSGVIV TRVAKIQQGALELLRSGVIVRLAQCQVYDM K I Q L R S 1 1 0 0 0 2 1 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 10 0 1139.6663 Q92621 Q92621 1566 1575 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00013389 144.09 By MS/MS 1 0 1 1 16387000 0 0 16387000 6436 1714 6711 27376 23134 23134 1 0 0 3530800 IQQLAISGLK APKPEENPSLNIQFKIQQLAISGLKVNRLD NIQFKIQQLAISGLKVNRLDMYGEKYKPFK K I Q L K V 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1069.6495 Q9Y2T2 Q9Y2T2 379 388 AP3M1 AP-3 complex subunit mu-1 no no 2 0.0057387 96.331 By MS/MS 4.5 0.5 1 1 2 30724000 0 0 30724000 6437 2250 6712 27377;27378 23135 23135 1 0 0 4353500 IQQLFTSPESSVTAAPR VVSILLGGPGSGFPRIQQLFTSPESSVTAA QLFTSPESSVTAAPRARKYKCGLPQPCPEE R I Q P R A 2 1 0 0 0 2 1 0 0 1 1 0 0 1 2 3 2 0 0 1 0 0 17 0 1830.9476 P98173 P98173 37 53 FAM3A Protein FAM3A yes yes 2 0.0003837 97.734 By MS/MS 1 0 1 1 21438000 0 0 21438000 6438 1116 6713 27379 23136 23136 1 0 0 4619200 IQQLPDHFGPGPVNVVLR VNKHGNFGPHLDPKRIQQLPDHFGPGPVNV LPDHFGPGPVNVVLRRIVQACVDCALETKT R I Q L R R 0 1 1 1 0 2 0 2 1 1 2 0 0 1 3 0 0 0 0 3 0 0 18 0 1985.0847 Q9UQR0 Q9UQR0 376 393 SCML2 Sex comb on midleg-like protein 2 yes yes 3 5.3711E-09 116.43 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 31059000 0 9499200 21560000 6439 2224 6714 27380;27381;27382;27383 23137;23138 23138 2 0 3772700 4181600 IQQLQEILQDLQK LIHSLGKSTTDNDVRIQQLQEILQDLQKRL VRIQQLQEILQDLQKRLESSEAERKQLQVE R I Q Q K R 0 0 0 1 0 5 1 0 0 2 3 1 0 0 0 0 0 0 0 0 0 0 13 0 1595.8883 Q9P0K7 Q9P0K7 431 443 RAI14 Ankycorbin yes yes 2 1.3013E-24 199.33 By MS/MS 2 0 1 1 5424300 0 5424300 0 6440 2115 6715 27384 23139 23139 1 0 2442700 0 IQQLTALGAAQATAK KHAMKQAVMEMMSQKIQQLTALGAAQATAK IQQLTALGAAQATAKA______________ K I Q A K A 5 0 0 0 0 3 0 1 0 1 2 1 0 0 0 0 2 0 0 0 0 0 15 0 1483.8358 Q99471 Q99471 139 153 PFDN5 Prefoldin subunit 5 yes yes 2 2.281E-07 167.71 By MS/MS 8 0 1 1 4880700 0 4880700 0 6441 1845 6716 27385 23140 23140 1 0 2220600 0 IQQQFSDLKR REKEEIEKYRMERPKIQQQFSDLKRKLAEV MERPKIQQQFSDLKRKLAEVTEEEWLSIPE K I Q K R K 0 1 0 1 0 3 0 0 0 1 1 1 0 1 0 1 0 0 0 0 0 0 10 1 1261.6779 O94906 O94906 138 147 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.00060313 102.06 By MS/MS 2.5 0.5 1 1 2 14245000 0 0 14245000 6442 305 6717 27386;27387 23141 23141 1 0 0 3158400 IQSGLGALSR GLARRQGGLAGSVRRIQSGLGALSRSHDTT GSVRRIQSGLGALSRSHDTTSNTLAQLLAK R I Q S R S 1 1 0 0 0 1 0 2 0 1 2 0 0 0 0 2 0 0 0 0 0 0 10 0 1000.5665 Q969G5 Q969G5 60 69 PRKCDBP Protein kinase C delta-binding protein yes yes 2 0.00088181 112.36 By MS/MS 6.5 0.5 1 1 2 5069000 0 0 5069000 6443 1742 6718 27388;27389 23142 23142 1 0 0 811060 IQSIYLER NAVSLFQVDGKTNPKIQSIYLERFPIFKAC DGKTNPKIQSIYLERFPIFKACFSANGEEV K I Q E R F 0 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1020.5604 Q9Y5J1 Q9Y5J1 288 295 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 0.00084705 124.08 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 67412000 0 32746000 34665000 6444 2297 6719 27390;27391;27392 23143;23144 23143 2 0 11524000 6723400 IQSQFTDAQK NSQGSEMFGDDDKRKIQSQFTDAQKHYQTL DDKRKIQSQFTDAQKHYQTLVIQLPGYPQH K I Q Q K H 1 0 0 1 0 3 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 0 10 0 1164.5775 P15924 P15924 608 617 DSP Desmoplakin yes yes 2 1.2423E-11 173.37 By MS/MS By MS/MS 5.22 3.33 2 1 1 1 1 1 1 1 8 1 80560000 68860000 11700000 0 6445 572 6720 27393;27394;27395;27396;27397;27398;27399;27400;27401 23145;23146;23147;23148 23148 4 78672000 5718700 0 IQTLPNQNQSQTQPLLK ATYNPNMPFKWNAQRIQTLPNQNQSQTQPL TLPNQNQSQTQPLLKTPPAVLQPIAPQTTF R I Q L K T 0 0 2 0 0 5 0 0 0 1 3 1 0 0 2 1 2 0 0 0 0 0 17 0 1950.0534 Q8IX12 Q8IX12 205 221 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2 1.3424E-05 140.91 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 15562000 0 3865000 11697000 6446 1579 6721 27402;27403;27404 23149;23150 23150 2 0 1740500 2591000 IQTQPGYANTLR FADIALAPMEAAKVRIQTQPGYANTLRDAA KVRIQTQPGYANTLRDAAPKMYKEEGLKAF R I Q L R D 1 1 1 0 0 2 0 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 12 0 1360.7099 Q00325 Q00325 190 201 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 2 1.3245E-17 185.29 By matching By MS/MS By MS/MS 3.43 2.56 3 1 2 1 1 3 3 78808000 4469800 20720000 53619000 6447 1121 6722 27405;27406;27407;27408;27409;27410;27411 23151;23152;23153;23154 23154 4 4469800 8552700 9556400 IQTYAEYMGR VKIAVNTSKYAESYRIQTYAEYMGRKQEEK AESYRIQTYAEYMGRKQEEKQIKRKWTEDS R I Q G R K 1 1 0 0 0 1 1 1 0 1 0 0 1 0 0 0 1 0 2 0 0 0 10 0 1230.5703 O95453 O95453 506 515 PARN Poly(A)-specific ribonuclease PARN yes yes 2 0.0015312 108.81 By MS/MS 3 0 1 1 9745700 0 0 9745700 6448 327 6723 27412 23155 23155 1 0 0 1890200 IQVHYYEDGNVQLVSHK FTITPPTAQVVGVLKIQVHYYEDGNVQLVS VHYYEDGNVQLVSHKDVQDSLTVSNEAQTA K I Q H K D 0 0 1 1 0 2 1 1 2 1 1 1 0 0 0 1 0 0 2 3 0 0 17 0 2028.0065 P52907;P47755 P52907 194 210 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 4 0.0011836 72.184 By MS/MS By MS/MS 6 0 2 1 1 17781000 0 8012300 9768700 6449 914;836 6724 27413;27414 23156;23157 23156 2 0 2773600 1461500 IQVLTDKIDVLLQQIEELGSEGK QSSGAAGPTGKNEEKIQVLTDKIDVLLQQI DVLLQQIEELGSEGKVEEAQGMMKLVEQLK K I Q G K V 0 0 0 2 0 3 3 2 0 3 4 2 0 0 0 1 1 0 0 2 0 0 23 1 2567.4058 O95232 O95232 129 151 LUC7L3 Luc7-like protein 3 yes yes 3 3.4594E-15 119.01 By MS/MS 4 0 1 1 2149600 0 0 2149600 6450 312 6725 27415 23158 23158 1 0 0 351100 IQVLVEPDHFK ERQSVFPFESGKPFKIQVLVEPDHFKVAVN KPFKIQVLVEPDHFKVAVNDAHLLQYNHRV K I Q F K V 0 0 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1323.7187 P17931 P17931 200 210 LGALS3 Galectin-3 yes yes 2 0.065522 70.1 By MS/MS 6 0 1 1 3416600 0 0 3416600 6451 590 6726 27416 23159 23159 1 0 0 511160 IQVTPPGFQLVFLPFADDK FVALVPQEEELDDQKIQVTPPGFQLVFLPF PPGFQLVFLPFADDKRKMPFTEKIMATPEQ K I Q D K R 1 0 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 19 0 2131.1354 P12956 P12956 425 443 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 8.913E-09 145.1 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 4 37359000 0 518880 36840000 6452 541 6727 27417;27418;27419;27420;27421 23160;23161 23161 2 0 221200 7237200 IQVTPPGFQLVFLPFADDKR FVALVPQEEELDDQKIQVTPPGFQLVFLPF PGFQLVFLPFADDKRKMPFTEKIMATPEQV K I Q K R K 1 1 0 2 0 2 0 1 0 1 2 1 0 3 3 0 1 0 0 2 0 0 20 1 2287.2365 P12956 P12956 425 444 XRCC6 X-ray repair cross-complementing protein 6 yes yes 3 1.138E-15 162.09 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 109250000 0 17814000 91436000 6453 541 6728 27422;27423;27424;27425;27426 23162;23163;23164 23164 3 0 7609600 17700000 IQVTPPGFQLVFLPFADDKRK FVALVPQEEELDDQKIQVTPPGFQLVFLPF GFQLVFLPFADDKRKMPFTEKIMATPEQVG K I Q R K M 1 1 0 2 0 2 0 1 0 1 2 2 0 3 3 0 1 0 0 2 0 0 21 2 2415.3315 P12956 P12956 425 445 XRCC6 X-ray repair cross-complementing protein 6 yes yes 4 9.462E-06 80.98 By MS/MS 3 0 1 1 2500500 0 2500500 0 6454 541 6729 27427 23165 23165 1 0 1066000 0 IQYQLVDISQDNALRDEMR KSQQSEVTRILDGKRIQYQLVDISQDNALR LVDISQDNALRDEMRALAGNPKATPPQIVN R I Q M R A 1 2 1 3 0 3 1 0 0 2 2 0 1 0 0 1 0 0 1 1 0 0 19 1 2306.1325 Q9H299 Q9H299 33 51 SH3BGRL3 SH3 domain-binding glutamic acid-rich-like protein 3 yes yes 3 0.00068802 69.935 By MS/MS 9 0 1 1 4837800 0 0 4837800 6455 1972 6730 27428 23166 23166 1 0 0 1545400 IRDILAQVK KIIGHFYASQMAQRKIRDILAQVKQQHQKG QMAQRKIRDILAQVKQQHQKGQSNQAQARR K I R V K Q 1 1 0 1 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1054.6499 Q9NZI8 Q9NZI8 553 561 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.004801 115.86 By MS/MS 4 0.816 1 1 1 3 20264000 0 20264000 0 6456 2104 6731 27429;27430;27431 23167 23167 1 0 8310600 0 IRDLNDEINK KKVAQIQNAGLGEFRIRDLNDEINKLLREK LGEFRIRDLNDEINKLLREKGHWEVRIKEL R I R N K L 0 1 2 2 0 0 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1228.6412 Q9ULR0 Q9ULR0 70 79 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 3 0.024852 62.894 By MS/MS By matching 6.67 0.471 1 2 2 1 13623000 0 5935300 7687700 6457 2189 6732 27432;27433;27434 23168 23168 1 0 2727400 1364100 IRDWYQR KVRALEEANADLEVKIRDWYQRQRPAEIKD ANADLEVKIRDWYQRQRPAEIKDYSPYFKT K I R Q R Q 0 2 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 7 1 1035.525 CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;Q04695;CON__Q04695 CON__P02533 147 153 KRT14;KRT16;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17 no no 2 0.018471 142.64 By MS/MS By MS/MS 3.33 2.62 1 1 1 1 2 82789000 34790000 0 47998000 + 6458 35;73;53 6733 27435;27436;27437 23169;23170;23171 23169 3 74981000 0 10451000 IREEFPDR GGGTGSGMGTLLISKIREEFPDRIMNTFSV GTLLISKIREEFPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 8 1 1060.5302 P04350;Q9BUF5 P04350 155 162 TUBB4A;TUBB6 Tubulin beta-4A chain;Tubulin beta-6 chain no no 2 0.0027848 131.06 By MS/MS 5.5 0.5 1 1 2 11521000 0 11521000 0 6459 414;1905 6734 27438;27439 23172 23172 1 0 3529000 0 IREEYPDR GGGTGSGMGTLLISKIREEYPDRIMNTFSV GTLLISKIREEYPDRIMNTFSVVPSPKVSD K I R D R I 0 2 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 8 1 1076.5251 P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;Q3ZCM7 P68371 155 162 TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB8 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-8 chain no no 2 4.8981E-05 156.35 By MS/MS By MS/MS 4.85 2.25 1 1 2 2 2 2 1 1 1 6 7 407830000 0 197850000 209990000 6460 1079;462;1274;1415 6735 27440;27441;27442;27443;27444;27445;27446;27447;27448;27449;27450;27451;27452 23173;23174;23175;23176;23177;23178;23179;23180;23181;23182 23173 10 0 55962000 32789000 IRELEEAMAGER QLSGLQKQASAAEDRIRELEEAMAGERDKF EDRIRELEEAMAGERDKFRKMLDAKEQEMT R I R E R D 2 2 0 0 0 0 4 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 12 1 1402.6875 Q03252 Q03252 335 346 LMNB2 Lamin-B2 yes yes 3 0.0053535 82.543 By MS/MS By MS/MS 3 0 2 1 1 10801000 0 2241800 8559100 6461 1156 6736 27453;27454 23183;23184 23184 2 0 955660 1660100 IRELESQISELQEDLESER RVEEEAAQKNMALKKIRELESQISELQEDL ESQISELQEDLESERASRNKAEKQKRDLGE K I R E R A 0 2 0 1 0 2 6 0 0 2 3 0 0 0 0 3 0 0 0 0 0 0 19 1 2302.1288 P35579 P35579 1106 1124 MYH9 Myosin-9 yes yes 2;3 7.3314E-114 263.2 By MS/MS 1.33 0.471 2 1 3 32050000 0 0 32050000 6462 752 6737 27455;27456;27457 23185;23186 23186 2 0 0 6939100 IRELTAVVQKR LATRTQNVLGEKGRRIRELTAVVQKRFGFP KGRRIRELTAVVQKRFGFPEGSVELYAEKV R I R K R F 1 2 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 2 0 0 11 2 1311.7987 P23396 P23396 66 76 RPS3 40S ribosomal protein S3 yes yes 3 0.00084955 107.09 By MS/MS 6 0 1 1 14876000 0 14876000 0 6463 641 6738 27458 23187 23187 1 0 5149500 0 IREYFGEFGEIEAIELPMDPK IFVGGLNPESPTEEKIREYFGEFGEIEAIE EFGEIEAIELPMDPKLNKRRGFVFITFKEE K I R P K L 1 1 0 1 0 0 5 2 0 3 1 1 1 2 2 0 0 0 1 0 0 0 21 1 2482.209 Q99729 Q99729 170 190 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 3 0.00069148 65.454 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 5553600 0 3809400 1744200 6464 1861 6739 27459;27460;27461 23188;23189;23190 23189 2 0 1123100 243280 IRIDSLSAQLSQLQK SNLVGAAHEELQQSRIRIDSLSAQLSQLQK IRIDSLSAQLSQLQKQLAAKEAKLRDLEDS R I R Q K Q 1 1 0 1 0 3 0 0 0 2 3 1 0 0 0 3 0 0 0 0 0 0 15 1 1698.9628 P02545 P02545 297 311 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 4.0624E-25 205.87 By MS/MS By MS/MS 3.08 1.27 2 2 4 3 2 4 9 236490000 0 77661000 158830000 6465 387 6740 27462;27463;27464;27465;27466;27467;27468;27469;27470;27471;27472;27473;27474 23191;23192;23193;23194;23195;23196 23195 6 0 31850000 30736000 IRKPSLLYEGFESPTMASVPALQLTPANPPPPEVSNPK GLLGLGPEAAAPGKRIRKPSLLYEGFESPT LTPANPPPPEVSNPKKPGRVTNQLQYLHKV R I R P K K 3 1 2 0 0 1 3 1 0 1 4 2 1 1 9 4 2 0 1 2 0 0 38 2 4072.1343 P25440 P25440 33 70 BRD2 Bromodomain-containing protein 2 yes yes 4 2.4834E-19 70.616 By MS/MS 2 0 1 1 2657200 0 2657200 0 6466 658 6741 27475 23197 23197 1 0 1196600 0 IRLENEIQTYR TECQNTEYQQLLDIKIRLENEIQTYRSLLE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG K I R Y R S 0 2 1 0 0 1 2 0 0 2 1 0 0 0 0 0 1 0 1 0 0 0 11 1 1433.7627 P13645;CON__P13645 P13645 440 450 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 2.1521E-147 284.45 By MS/MS By MS/MS By MS/MS 5.33 2.89 6 6 6 5 6 6 6 3 5 6 20 16 19 16030000000 10152000000 761490000 5116400000 + 6467 56 6742 27476;27477;27478;27479;27480;27481;27482;27483;27484;27485;27486;27487;27488;27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504;27505;27506;27507;27508;27509;27510;27511;27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523;27524;27525;27526;27527;27528;27529;27530 23198;23199;23200;23201;23202;23203;23204;23205;23206;23207;23208;23209;23210;23211;23212;23213;23214;23215;23216;23217;23218;23219;23220;23221;23222;23223;23224;23225;23226;23227;23228;23229;23230;23231;23232;23233;23234;23235;23236;23237;23238;23239;23240;23241;23242;23243;23244;23245;23246;23247;23248;23249;23250;23251;23252;23253;23254;23255;23256;23257;23258;23259;23260;23261;23262;23263;23264;23265;23266;23267;23268;23269;23270;23271;23272;23273;23274;23275;23276;23277;23278 23210 81 9739500000 595220000 1347400000 IRLESEEEGVPSTAIR KGRHKTTGQVVAMKKIRLESEEEGVPSTAI RLESEEEGVPSTAIREISLLKELRHPNIVS K I R I R E 1 2 0 0 0 0 4 1 0 2 1 0 0 0 1 2 1 0 0 1 0 0 16 1 1784.9268 P06493 P06493 35 50 CDK1 Cyclin-dependent kinase 1 yes yes 2 1.3873E-25 203.32 By MS/MS 6 0 1 1 16176000 0 0 16176000 6468 443 6743 27531 23279 23279 1 0 0 2420100 IRNIIQQAIDAGEVPSYNAFVK IMESVLCVQYTEEPRIRNIIQQAIDAGEVP AIDAGEVPSYNAFVKESKQKMNARKRRAQE R I R V K E 3 1 2 1 0 2 1 1 0 4 0 1 0 1 1 1 0 0 1 2 0 0 22 1 2445.3016 Q8WXX5 Q8WXX5 159 180 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 3 0.00040315 66.644 By MS/MS 6 0 1 1 1318400 0 1318400 0 6469 1698 6744 27532 23280 23280 1 0 456380 0 IRPLPEEMLSYAR CNVDSNKQYQLADWRIRPLPEEMLSYARDD WRIRPLPEEMLSYARDDTHYLLYIYDKMRL R I R A R D 1 2 0 0 0 0 2 0 0 1 2 0 1 0 2 1 0 0 1 0 0 0 13 1 1573.8286 Q01780 Q01780 426 438 EXOSC10 Exosome component 10 yes yes 2;3 9.3867E-07 171.49 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 19595000 0 6607600 12987000 6470 1138 6745 27533;27534;27535 23281;23282;23283 23282 3 0 2975500 2840700 IRPLTEAEK VSLMELFKDITPSYKIRPLTEAEKSTKTRK ITPSYKIRPLTEAEKSTKTRKETQKLREFE K I R E K S 1 1 0 0 0 0 2 0 0 1 1 1 0 0 1 0 1 0 0 0 0 0 9 1 1055.5975 Q8WTT2 Q8WTT2 275 283 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.014763 106.2 By MS/MS 2.5 0.5 1 1 2 8712900 0 0 8712900 6471 1670 6746 27536;27537 23284 23284 1 0 0 1743300 IRPTAVTLEHVPK FQGPQGFAVVRLSARIRPTAVTLEHVPKAL ARIRPTAVTLEHVPKALSPNSTISSAPKDF R I R P K A 1 1 0 0 0 0 1 0 1 1 1 1 0 0 2 0 2 0 0 2 0 0 13 1 1459.8511 Q9UH99 Q9UH99 619 631 SUN2 SUN domain-containing protein 2 yes yes 3 0.0050319 77.696 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 23969000 3100100 7196400 13672000 6472 2148 6747 27538;27539;27540;27541 23285;23286 23285 2 3576800 3067800 2591000 IRQQLEEVHAK RLEEVGVRAQDRLDKIRQQLEEVHAKVEEQ RLDKIRQQLEEVHAKVEEQGNQMRLQAEAF K I R A K V 1 1 0 0 0 2 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1349.7415 CON__Q03247 CON__Q03247 249 259 yes yes 3 0.037684 56.225 By MS/MS By MS/MS 9.5 0.5 2 2 2 2 9218900 0 4069100 5149800 + 6473 72 6748 27542;27543;27544;27545 23287;23288 23288 2 0 18386000 8057100 IRVDFSITK EAKERANGMELDGRRIRVDFSITKRPHTPT ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R I R T K R 0 1 0 1 0 0 0 0 0 2 0 1 0 1 0 1 1 0 0 1 0 0 9 1 1077.6182 P62995 P62995 189 197 TRA2B Transformer-2 protein homolog beta yes yes 2 0.0058078 113.1 By MS/MS By matching 6.5 1.12 1 1 1 1 3 1 24903000 0 22864000 2038900 6474 1055 6749 27546;27547;27548;27549 23289;23290 23289 2 0 7855800 312580 IRVDLASETSSR QALKRNGAQIADGFRIRVDLASETSSRDKR GFRIRVDLASETSSRDKRSVFVGNLPYKVE R I R S R D 1 2 0 1 0 0 1 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 12 1 1332.6997 P42696 P42696 273 284 RBM34 RNA-binding protein 34 yes yes 2;3 0.00439 124.42 By matching By MS/MS 3.67 0.471 1 2 1 2 19200000 7058200 12142000 0 6475 807 6750 27550;27551;27552 23291;23292 23292 2 8143600 4029500 0 IRVESLLVTAISK VIDPGFAKQKVYNPRIRVESLLVTAISKAS PRIRVESLLVTAISKASAQQRAGRAGRTRP R I R S K A 1 1 0 0 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 2 0 0 13 1 1427.8712 O43143 O43143 451 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 0.0031498 102.28 By MS/MS By MS/MS 2.83 0.687 2 3 1 1 5 42557000 0 2967700 39590000 6476 186 6751 27553;27554;27555;27556;27557;27558 23293;23294;23295;23296;23297 23295 5 0 1265100 8159000 ISAEGGEQVER PQLGAYAPPPHIIGRISAEGGEQVERVVEG IIGRISAEGGEQVERVVEGPAQAMSRGTMI R I S E R V 1 1 0 0 0 1 3 2 0 1 0 0 0 0 0 1 0 0 0 1 0 0 11 0 1173.5626 Q9BQE5 Q9BQE5 249 259 APOL2 Apolipoprotein L2 yes yes 2 0.0024599 107.79 By MS/MS 6 0 1 1 3125200 0 0 3125200 6477 1884 6752 27559 23298 23298 1 0 0 467570 ISAILHPSTYLNK EEEYLQLTFDKSVFKISAILHPSTYLNKIL FKISAILHPSTYLNKILLGSEQGSLQLWNV K I S N K I 1 0 1 0 0 0 0 0 1 2 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1455.8086 Q8NI36 Q8NI36 207 219 WDR36 WD repeat-containing protein 36 yes yes 3 0.01604 61.989 By MS/MS By matching 2.5 0.5 1 1 1 1 10883000 0 7279300 3603300 6478 1648 6753 27560;27561 23299 23299 1 0 3278000 698860 ISAISVAER GKGSACRIVCTQPRRISAISVAERVAAERA CTQPRRISAISVAERVAAERAESCGSGNST R I S E R V 2 1 0 0 0 0 1 0 0 2 0 0 0 0 0 2 0 0 0 1 0 0 9 0 944.5291 Q9H2U1;Q6P158 Q9H2U1 267 275 DHX36;DHX57 ATP-dependent RNA helicase DHX36;Putative ATP-dependent RNA helicase DHX57 yes no 2 0.0024174 104.06 By MS/MS 2 0 1 1 5301400 0 5301400 0 6479 1976 6754 27562 23300 23300 1 0 2387300 0 ISAMKEEKEQLSAER KMEDIERQVRELKTKISAMKEEKEQLSAER ISAMKEEKEQLSAERQEQIKQRTKLELKAK K I S E R Q 2 1 0 0 0 1 4 0 0 1 1 2 1 0 0 2 0 0 0 0 0 0 15 2 1747.8774 Q9UQE7 Q9UQE7 281 295 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3;4 1.6861E-23 204.48 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 56015000 0 5363500 50652000 6480 2222 6755 27563;27564;27565;27566;27567 23301;23302;23303;23304 23303 4 0 2415300 11177000 ISASAEELR LTFQMKKNAEELKARISASAEELRQRLAPL EELKARISASAEELRQRLAPLAEDVRGNLR R I S L R Q 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 9 0 974.50327 P06727 P06727 256 264 APOA4 Apolipoprotein A-IV yes yes 2 0.0004608 136.75 By MS/MS 9.5 0.5 1 1 2 11704000 11704000 0 0 6481 446 6756 27568;27569 23305 23305 1 7412400 0 0 ISATSIFFESMPYK DGGHLTHGYMSDVKRISATSIFFESMPYKL RISATSIFFESMPYKLNPKTGLIDYNQLAL R I S Y K L 1 0 0 0 0 0 1 0 0 2 0 1 1 2 1 3 1 0 1 0 0 0 14 0 1619.7905 P34897;P34896 P34897 183 196 SHMT2;SHMT1 Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic yes no 2 0.00039358 141.08 By matching By MS/MS By MS/MS 4.08 1.38 1 4 3 2 1 1 1 4 7 147230000 11807000 28965000 106460000 6482 734 6757;6758 27570;27571;27572;27573;27574;27575;27576;27577;27578;27579;27580;27581 23306;23307;23308;23309;23310;23311;23312;23313 23311 334 8 13623000 9828800 17409000 ISAVSVAER DRAAECNIVVTQPRRISAVSVAERVAFERG VTQPRRISAVSVAERVAFERGEEPGKSCGY R I S E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 930.51345 Q08211 Q08211 448 456 DHX9 ATP-dependent RNA helicase A yes yes 2 8.5506E-08 162.25 By MS/MS By MS/MS By MS/MS 2 0.707 1 2 1 1 2 1 91154000 13473000 52890000 24791000 6483 1182 6759 27582;27583;27584;27585 23314;23315;23316;23317 23317 4 16233000 23612000 5341600 ISDAIMNMQDNSVQVSQK GPFNIESVMDPIDVKISDAIMNMQDNSVQV AIMNMQDNSVQVSQKVFQGCGPPKPLPAGR K I S Q K V 1 0 2 2 0 3 0 0 0 2 0 1 2 0 0 3 0 0 0 2 0 0 18 0 2006.9401 O75487 O75487 319 336 GPC4 Glypican-4;Secreted glypican-4 yes yes 2 1.3666E-08 131.26 By MS/MS 6 0 1 1 7783800 0 0 7783800 6484 265 6760 27586 23318 23318 1 0 0 1164500 ISDEGIAYLVK QQQRLLDIAKKENVKISDEGIAYLVKVSEG ENVKISDEGIAYLVKVSEGDLRKAITFLQS K I S V K V 1 0 0 1 0 0 1 1 0 2 1 1 0 0 0 1 0 0 1 1 0 0 11 0 1206.6496 P35249 P35249 222 232 RFC4 Replication factor C subunit 4 yes yes 2 0.00032735 123.35 By matching By MS/MS 5 0.816 1 1 1 1 2 37887000 0 1604600 36283000 6485 744 6761 27587;27588;27589 23319 23319 1 0 532510 5310200 ISDGVVLFIDAAEGVMLNTER PGHVNFSDEVTAGLRISDGVVLFIDAAEGV LFIDAAEGVMLNTERLIKHAVQERLAVTVC R I S E R L 2 1 1 2 0 0 2 2 0 2 2 0 1 1 0 1 1 0 0 3 0 0 21 0 2248.1409 Q15029 Q15029 221 241 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 6.7918E-15 151.96 By MS/MS 2.2 0.4 4 1 5 28896000 0 0 28896000 6486 1335 6762 27590;27591;27592;27593;27594 23320;23321;23322;23323;23324;23325;23326;23327 23320 8 0 0 6522700 ISDIQSQLEK QSKVPLSEFDFSWSKISDIQSQLEKLIEKN FSWSKISDIQSQLEKLIEKNYFLHKSAQEA K I S E K L 0 0 0 1 0 2 1 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 10 0 1159.6085 Q9NVP1 Q9NVP1 558 567 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 1.2476E-22 192.91 By MS/MS By MS/MS By MS/MS 4.44 2.41 2 3 1 2 1 2 3 4 161450000 15706000 36312000 109430000 6487 2069 6763 27595;27596;27597;27598;27599;27600;27601;27602;27603 23328;23329;23330;23331;23332;23333;23334;23335 23334 8 8815800 16094000 20961000 ISDLGGGVPLR VKTLVTLGKEDLSIKISDLGGGVPLRKIDR LSIKISDLGGGVPLRKIDRLFNYMYSTAPR K I S L R K 0 1 0 1 0 0 0 3 0 1 2 0 0 0 1 1 0 0 0 1 0 0 11 0 1082.6084 Q15120 Q15120 285 295 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 2 0.00032719 124.08 By MS/MS By MS/MS 5 0 2 1 1 7605300 0 3901700 3703600 6488 1346 6764 27604;27605 23336;23337 23336 2 0 1005700 516590 ISDSEGFK QGPPPGGPGGRSEEKISDSEGFKANLSLLR GGRSEEKISDSEGFKANLSLLRRPGEKTYT K I S F K A 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 2 0 0 0 0 0 0 8 0 881.41306 P23246 P23246 272 279 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.0036854 104.21 By matching By MS/MS By MS/MS 2.5 0.957 1 2 2 1 1 2 3 128170000 871490 36787000 90512000 6489 638 6765 27606;27607;27608;27609;27610;27611 23338;23339;23340 23338 3 871490 16376000 17702000 ISDSEGFKANLSLLR QGPPPGGPGGRSEEKISDSEGFKANLSLLR ISDSEGFKANLSLLRRPGEKTYTQRCRLFV K I S L R R 1 1 1 1 0 0 1 1 0 1 3 1 0 1 0 3 0 0 0 0 0 0 15 1 1648.8784 P23246 P23246 272 286 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 0.00015103 102.38 By MS/MS 2 0 1 1 6872600 0 6872600 0 6490 638 6766 27612 23341 23341 1 0 3094800 0 ISEDETER AGQEAVVDLHADDSRISEDETERNGDDGTH LHADDSRISEDETERNGDDGTHDKGLKICR R I S E R N 0 1 0 1 0 0 3 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 8 0 977.43017 Q9UKV3 Q9UKV3 897 904 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.055304 82.241 By MS/MS 3 0 1 1 1928900 0 0 1928900 6491 2184 6767 27613 23342 23342 0 0 0 374120 ISEDKNPDYR RNEGTATYAAAVLFRISEDKNPDYRKRVSV AVLFRISEDKNPDYRKRVSVELTNSLFKHD R I S Y R K 0 1 1 2 0 0 1 0 0 1 0 1 0 0 1 1 0 0 1 0 0 0 10 1 1235.5782 P14923 P14923 652 661 JUP Junction plakoglobin yes yes 3 0.0018128 91.658 By MS/MS 3 0 1 1 14686000 0 0 14686000 6492 567 6768 27614 23343 23343 1 0 0 2848300 ISEDVEER EDSSSDPRLRRLQNRISEDVEERLARHRKI LRRLQNRISEDVEERLARHRKIVEPEVVGE R I S E R L 0 1 0 1 0 0 3 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 8 0 975.4509 P55081 P55081 93 100 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.00087421 123.69 By MS/MS 3 0 1 1 12193000 0 0 12193000 6493 937 6769 27615 23344 23344 1 0 0 2364900 ISEIEDAAFLAR ITYGQKVMEKETEKKISEIEDAAFLAREKA EKKISEIEDAAFLAREKAKADAECYTAMKI K I S A R E 3 1 0 1 0 0 2 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 12 0 1333.6878 O75477;O94905 O94905 242 253 ERLIN1;ERLIN2 Erlin-1;Erlin-2 no no 2 0.00026146 130.66 By matching By matching By MS/MS 4 0.707 1 2 1 2 1 1 44511000 21605000 6933700 15972000 6494 304;263 6770 27616;27617;27618;27619 23345 23345 1 20613000 2301100 2227800 ISEKEEVTTR RVRALELENDRLLLKISEKEEVTTREVSGI RLLLKISEKEEVTTREVSGIKALYESELAD K I S T R E 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 1 2 0 0 1 0 0 10 1 1190.6143 Q03252 Q03252 78 87 LMNB2 Lamin-B2 yes yes 2 0.0033211 137.05 By MS/MS 2 0.816 1 1 1 3 23917000 0 0 23917000 6495 1156 6771 27620;27621;27622 23346 23346 1 0 0 4647800 ISELEGNLQTLR SELARKEEMDKLLDKISELEGNLQTLRNSN LDKISELEGNLQTLRNSNST__________ K I S L R N 0 1 1 0 0 1 2 1 0 1 3 0 0 0 0 1 1 0 0 0 0 0 12 0 1371.7358 Q96SB3 Q96SB3 801 812 PPP1R9B Neurabin-2 yes yes 2 1.9485E-12 182.64 By MS/MS 2 0 1 1 6601700 0 0 6601700 6496 1831 6772 27623 23347 23347 1 0 0 1491900 ISELGSQLSDEAVEDGLFHEFKR SAPGGGDGAEYKTLKISELGSQLSDEAVED SDEAVEDGLFHEFKRFGDVSVKISHLSGSG K I S K R F 1 1 0 2 0 1 4 2 1 1 3 1 0 2 0 3 0 0 0 1 0 0 23 1 2605.266 Q96T37 Q96T37 174 196 RBM15 Putative RNA-binding protein 15 yes yes 4 0.0005071 61.345 By MS/MS 2 0 1 1 8272600 0 0 8272600 6497 1838 6773 27624 23348 23348 1 0 0 1869500 ISELTSELTDER ERNELRLNSDRLESRISELTSELTDERNTG ESRISELTSELTDERNTGESASQLLDAETA R I S E R N 0 1 0 1 0 0 3 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1391.678 Q92614 Q92614 1291 1302 MYO18A Unconventional myosin-XVIIIa yes yes 2 5.182E-05 145.99 By matching By MS/MS 1.33 0.471 2 1 1 2 9056000 2011600 7044400 0 6498 1710 6774 27625;27626;27627 23349 23349 1 2011600 3406100 0 ISEQFSAMFR TFIGNSTAIQELFKRISEQFSAMFRRKAFL ELFKRISEQFSAMFRRKAFLHWFTGEGMDE R I S F R R 1 1 0 0 0 1 1 0 0 1 0 0 1 2 0 2 0 0 0 0 0 0 10 0 1214.5754 Q9BUF5 Q9BUF5 381 390 TUBB6 Tubulin beta-6 chain yes yes 2 1.0627E-10 163.99 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 14156000 0 3927700 10229000 6499 1905 6775;6776 27628;27629;27630 23350;23351 23351 678 2 0 1145900 1670700 ISEQFTAMFR TFIGNSTAIQELFKRISEQFTAMFRRKAFL ELFKRISEQFTAMFRRKAFLHWYTGEGMDE R I S F R R 1 1 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 10 0 1228.591 P07437;P68371;Q13885;Q9BVA1;P04350;Q13509 P68371 381 390 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2 5.8044E-92 253.56 By MS/MS By MS/MS By MS/MS 4.71 2.41 4 4 3 5 5 5 3 2 3 5 15 14 2907100000 48405000 1292500000 1566200000 6500 1079;462;1274;414;1254 6777;6778 27631;27632;27633;27634;27635;27636;27637;27638;27639;27640;27641;27642;27643;27644;27645;27646;27647;27648;27649;27650;27651;27652;27653;27654;27655;27656;27657;27658;27659;27660;27661;27662;27663;27664 23352;23353;23354;23355;23356;23357;23358;23359;23360;23361;23362;23363;23364;23365;23366;23367;23368;23369;23370;23371;23372;23373;23374;23375;23376;23377;23378;23379;23380;23381;23382;23383;23384;23385;23386;23387;23388;23389;23390;23391;23392;23393;23394;23395 23374 143 44 41100000 391860000 255400000 ISEQFTAMFRR TFIGNSTAIQELFKRISEQFTAMFRRKAFL LFKRISEQFTAMFRRKAFLHWYTGEGMDEM R I S R R K 1 2 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 11 1 1384.6922 P07437;P68371;Q13885;Q9BVA1;P04350;Q13509 P68371 381 391 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 3 0.0037313 83.397 By MS/MS 5 0 1 1 3346900 0 3346900 0 6501 1079;462;1274;414;1254 6779 27665 23396 23396 1 0 862720 0 ISFEEFER MSGFSPELIDYLEGKISFEEFERRREERKT IDYLEGKISFEEFERRREERKTREKKSLQE K I S E R R 0 1 0 0 0 0 3 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 8 0 1055.4924 Q9Y5Q9 Q9Y5Q9 16 23 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 0.0043125 104.75 By MS/MS 2 0 1 1 0 0 0 0 6502 2301 6780 27666 23397 23397 1 0 0 0 ISFELMR EKRKKRDIPDYLCGKISFELMREPCITPSG IPDYLCGKISFELMREPCITPSGITYDRKD K I S M R E 0 1 0 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 7 0 894.46332 Q9UNE7 Q9UNE7 235 241 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2 0.0086919 122.79 By MS/MS By MS/MS 6 0 2 1 1 15471000 0 2030300 13441000 6503 2204 6781 27667;27668 23398;23399 23398 2 0 702820 2010900 ISFFLEK AVEVPAVQSPRRSPRISFFLEKENEPPGRE QSPRRSPRISFFLEKENEPPGRELTKEDLF R I S E K E 0 0 0 0 0 0 1 0 0 1 1 1 0 2 0 1 0 0 0 0 0 0 7 0 882.48511 Q96FF9 Q96FF9 82 88 CDCA5 Sororin yes yes 2 0.051157 77.058 By MS/MS 6.5 0.5 1 1 2 5962500 0 0 5962500 6504 1782 6782 27669;27670 23400 23400 1 0 0 934300 ISFGTPAPGFSSMLYGMK TDRERLRTIYNRDFKISFGTPAPGFSSMLY GTPAPGFSSMLYGMKIANLAYVTKTRVRFF K I S M K I 1 0 0 0 0 0 0 3 0 1 1 1 2 2 2 3 1 0 1 0 0 0 18 0 1889.9056 Q9HCE1 Q9HCE1 45 62 MOV10 Putative helicase MOV-10 yes yes 2 0.0013871 83.087 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 14379000 0 8300600 6078800 6505 2011 6783 27671;27672;27673 23401;23402 23401 2 0 3717800 1373700 ISFPWNEIR LGLHIYDPENRLTPKISFPWNEIRNISYSD NRLTPKISFPWNEIRNISYSDKEFTIKPLD K I S I R N 0 1 1 0 0 0 1 0 0 2 0 0 0 1 1 1 0 1 0 0 0 0 9 0 1160.5978 P35240 P35240 254 262 NF2 Merlin yes yes 2 0.00016676 141.52 By MS/MS 3 0 1 1 6057600 0 0 6057600 6506 741 6784 27674 23403 23403 1 0 0 1174900 ISGETIFVTAPHEATAGIIGVNR HLYDLETGTCIYMNRISGETIFVTAPHEAT TAPHEATAGIIGVNRKGQVLSVCVEEENII R I S N R K 3 1 1 0 0 0 2 3 1 4 0 0 0 1 1 1 3 0 0 2 0 0 23 0 2352.2438 Q00610 Q00610 298 320 CLTC Clathrin heavy chain 1 yes yes 2;3 1.0601E-194 296.25 By MS/MS By MS/MS 1.88 0.781 3 3 2 3 5 139920000 0 28577000 111350000 6507 1125 6785 27675;27676;27677;27678;27679;27680;27681;27682 23404;23405;23406;23407;23408;23409 23408 6 0 13074000 24181000 ISGLIYEETR KPAIRRLARRGGVKRISGLIYEETRGVLKV GGVKRISGLIYEETRGVLKVFLENVIRDAV R I S T R G 0 1 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1179.6136 P62805 P62805 47 56 HIST1H4A Histone H4 yes yes 2 2.6253E-81 239.66 By MS/MS By MS/MS By MS/MS 6.86 2.85 3 1 2 3 2 2 3 3 13 4 6 10 20 20102000000 498800000 5144700000 14458000000 6508 1033 6786 27683;27684;27685;27686;27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707;27708;27709;27710;27711;27712;27713;27714;27715;27716;27717;27718 23410;23411;23412;23413;23414;23415;23416;23417;23418;23419;23420;23421;23422;23423;23424;23425;23426;23427;23428;23429;23430;23431;23432;23433;23434;23435;23436;23437;23438;23439;23440;23441;23442;23443;23444;23445;23446;23447;23448;23449;23450;23451;23452;23453;23454;23455;23456;23457;23458;23459;23460;23461;23462;23463;23464;23465;23466;23467;23468;23469;23470;23471;23472;23473;23474;23475;23476;23477;23478;23479;23480;23481;23482;23483 23479 73 344890000 12195000000 7449400000 ISGLIYEETRGVLK KPAIRRLARRGGVKRISGLIYEETRGVLKV RISGLIYEETRGVLKVFLENVIRDAVTYTE R I S L K V 0 1 0 0 0 0 2 2 0 2 2 1 0 0 0 1 1 0 1 1 0 0 14 1 1576.8825 P62805 P62805 47 60 HIST1H4A Histone H4 yes yes 2;3 9.3321E-88 251.34 By MS/MS By MS/MS 9 0.667 2 5 2 5 4 142430000 0 22630000 119800000 6509 1033 6787 27719;27720;27721;27722;27723;27724;27725;27726;27727 23484;23485;23486;23487;23488;23489;23490;23491;23492;23493 23491 10 0 58975000 37387000 ISGSILNELIGLVR FLTTLAKVYPSSLSKISGSILNELIGLVRS KISGSILNELIGLVRSPLLQGGALSAMLDF K I S V R S 0 1 1 0 0 0 1 2 0 3 3 0 0 0 0 2 0 0 0 1 0 0 14 0 1482.877 Q86VP6 Q86VP6 730 743 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 5.5219E-34 208.46 By MS/MS 2.5 0.5 1 1 2 8617700 0 0 8617700 6510 1554 6788 27728;27729 23494 23494 1 0 0 1920300 ISGVGIDQPPYGIFVINQK KIHSDCAANQQVTYRISGVGIDQPPYGIFV GIDQPPYGIFVINQKTGEINITSIVDREVT R I S Q K T 0 0 1 1 0 2 0 3 0 4 0 1 0 1 2 1 0 0 1 2 0 0 19 0 2044.0993 Q02413 Q02413 87 105 DSG1 Desmoglein-1 yes yes 2;3 2.2749E-12 166.04 By MS/MS By matching By MS/MS 6.41 2.64 1 1 1 1 1 3 3 1 3 2 12 1 4 69133000 60835000 413230 7884700 6511 1146 6789 27730;27731;27732;27733;27734;27735;27736;27737;27738;27739;27740;27741;27742;27743;27744;27745;27746 23495;23496;23497;23498;23499;23500;23501;23502;23503;23504;23505;23506;23507;23508;23509;23510;23511;23512;23513;23514 23511 20 63597000 237280 2729800 ISHGEVLEWQK RCGIIHVRGPMPPNRISHGEVLEWQKTFEE PPNRISHGEVLEWQKTFEEKLTPLLSVRES R I S Q K T 0 0 0 0 0 1 2 1 1 1 1 1 0 0 0 1 0 1 0 1 0 0 11 0 1324.6776 Q9BXP5 Q9BXP5 654 664 SRRT Serrate RNA effector molecule homolog yes yes 3 0.015592 66.486 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 33505000 0 4884500 28620000 6512 1929 6790 27747;27748;27749;27750 23515;23516 23516 2 0 2199600 6298500 ISHLSGSGSGDER GLFHEFKRFGDVSVKISHLSGSGSGDERVA VKISHLSGSGSGDERVAFVNFRRPEDARAA K I S E R V 0 1 0 1 0 0 1 3 1 1 1 0 0 0 0 4 0 0 0 0 0 0 13 0 1300.6008 Q96T37 Q96T37 204 216 RBM15 Putative RNA-binding protein 15 yes yes 3 0.009566 67.952 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 2328400 0 1503900 824430 6513 1838 6791 27751;27752 23517;23518 23517 2 0 677240 159900 ISIEMHGTLEDQLSHLR VIGPWIQTKMEEIGRISIEMHGTLEDQLSH IEMHGTLEDQLSHLRQYEKSIVNYKPKIDQ R I S L R Q 0 1 0 1 0 1 2 1 2 2 3 0 1 0 0 2 1 0 0 0 0 0 17 0 1977.9942 P12814 P12814 656 672 ACTN1 Alpha-actinin-1 yes yes 4 2.0009E-06 110.38 By MS/MS 2 0 1 1 5286500 0 0 5286500 6514 540 6792 27753 23519 23519 1 0 0 1194600 ISIEMNGTLEDQLSHLK VVGPWIQTKMEEIGRISIEMNGTLEDQLSH IEMNGTLEDQLSHLKQYERSIVDYKPNLDL R I S L K Q 0 0 1 1 0 1 2 1 1 2 3 1 1 0 0 2 1 0 0 0 0 0 17 0 1926.9721 O43707 O43707 675 691 ACTN4 Alpha-actinin-4 yes yes 2;3 2.3885E-08 141.55 By MS/MS By MS/MS 1.8 0.4 1 4 2 3 54222000 0 25311000 28912000 6515 210 6793;6794 27754;27755;27756;27757;27758 23520;23521;23522;23523 23523 86 3 0 11398000 6515400 ISIGGGSCAISGGYGSR GFGSRSLYGLGGSKRISIGGGSCAISGGYG IGGGSCAISGGYGSRAGGSYGFGGAGSGFG R I S S R A 1 1 0 0 1 0 0 6 0 3 0 0 0 0 0 4 0 0 1 0 0 0 17 0 1597.7519 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 70 86 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 2.4651E-13 177.42 By MS/MS By MS/MS By MS/MS 5.31 3.2 3 1 2 1 1 1 1 1 2 7 1 5 122420000 77326000 4353000 40740000 + 6516 68;47;37 6795 27759;27760;27761;27762;27763;27764;27765;27766;27767;27768;27769;27770;27771 23524;23525;23526;23527;23528;23529;23530;23531;23532 23526 9 80718000 1444600 13042000 ISIIINSSAPPHTILNELKPEQVEQLK LKAVNYKILDRENRRISIIINSSAPPHTIL TILNELKPEQVEQLKLIMSKRYDGSQQALD R I S L K L 1 0 2 0 0 2 3 0 1 5 3 2 0 0 3 3 1 0 0 1 0 0 27 1 3010.6703 Q9UBU9 Q9UBU9 187 213 NXF1 Nuclear RNA export factor 1 yes yes 4 2.3969E-06 59.189 By MS/MS 3.5 0.5 1 1 2 12792000 0 0 12792000 6517 2136 6796 27772;27773 23533 23533 1 0 0 2435600 ISINQALQHAFIQEK KDLLDQILMLDPAKRISINQALQHAFIQEK ISINQALQHAFIQEKI______________ R I S E K I 2 0 1 0 0 3 1 0 1 3 1 1 0 1 0 1 0 0 0 0 0 0 15 0 1738.9366 Q13523 Q13523 992 1006 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 2;3 0.0041169 82.85 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 10624000 0 2274200 8350100 6518 1255 6797 27774;27775 23534;23535 23534 2 0 1111600 1886900 ISISTSGGSFR GYGSRSLYNLGGSKRISISTSGGSFRNRFG GSKRISISTSGGSFRNRFGAGAGGGYGFGG R I S F R N 0 1 0 0 0 0 0 2 0 2 0 0 0 1 0 4 1 0 0 0 0 0 11 0 1110.5669 CON__P13647;P13647 CON__P13647 74 84 KRT5 Keratin, type II cytoskeletal 5 yes no 2 2.3347E-59 233.46 By MS/MS By MS/MS By MS/MS 5.07 2.89 3 4 3 2 3 4 2 1 2 3 10 8 9 2408300000 1920000000 95012000 393330000 + 6519 58 6798 27776;27777;27778;27779;27780;27781;27782;27783;27784;27785;27786;27787;27788;27789;27790;27791;27792;27793;27794;27795;27796;27797;27798;27799;27800;27801;27802 23536;23537;23538;23539;23540;23541;23542;23543;23544;23545;23546;23547;23548;23549;23550;23551;23552;23553;23554;23555;23556;23557;23558 23536 23 2094200000 78397000 184140000 ISITEGIER SSPIAAIFDTENLEKISITEGIERGIVDSI TENLEKISITEGIERGIVDSITGQRLLEAQ K I S E R G 0 1 0 0 0 0 2 1 0 3 0 0 0 0 0 1 1 0 0 0 0 0 9 0 1016.5502 P15924 P15924 2631 2639 DSP Desmoplakin yes yes 2 0.00038975 137.9 By MS/MS By MS/MS 1 0 2 1 1 47543000 0 20298000 27245000 6520 572 6799 27803;27804 23559;23560 23560 2 0 9921400 5870500 ISKPAPYWEGTAVIDGEFK RVSVADHSLHLSKAKISKPAPYWEGTAVID APYWEGTAVIDGEFKELKLTDYRGKYLVFF K I S F K E 2 0 0 1 0 0 2 2 0 2 0 2 0 1 2 1 1 1 1 1 0 0 19 1 2107.0626 Q13162 Q13162 81 99 PRDX4 Peroxiredoxin-4 yes yes 2;3 5.7841E-05 105.46 By MS/MS 7 0.707 1 2 1 4 27806000 0 0 27806000 6521 1227 6800 27805;27806;27807;27808 23561;23562 23562 2 0 0 4712900 ISLEDIQAFEK QDRDWEAYWRLLFKKISLEDIQAFEKTYKG LFKKISLEDIQAFEKTYKGSEEELADIKQA K I S E K T 1 0 0 1 0 1 2 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1291.666 Q8WXX5 Q8WXX5 108 118 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 6.9062E-05 142.36 By MS/MS By MS/MS 6 0 2 1 1 32943000 0 3063300 29880000 6522 1698 6801 27809;27810 23563;23564 23564 2 0 1060400 4470400 ISLGLPVGAVINCADNTGAK MSKRGRGGSSGAKFRISLGLPVGAVINCAD PVGAVINCADNTGAKNLYIISVKGIKGRLN R I S A K N 3 0 2 1 1 0 0 3 0 2 2 1 0 0 1 1 1 0 0 2 0 0 20 0 1969.0303 P62829 P62829 16 35 RPL23 60S ribosomal protein L23 yes yes 2 1.6267E-28 194.51 By MS/MS By MS/MS 8.4 1.02 1 2 1 1 1 4 168510000 22546000 0 145960000 6523 1036 6802 27811;27812;27813;27814;27815 23565;23566;23567;23568;23569;23570 23565 6 19357000 0 28676000 ISLGMPVGPNAHK RLKEKKPGDLSDELRISLGMPVGPNAHKVP LRISLGMPVGPNAHKVPPPWLIAMQRYGPP R I S H K V 1 0 1 0 0 0 0 2 1 1 1 1 1 0 2 1 0 0 0 1 0 0 13 0 1319.702 Q13435 Q13435 615 627 SF3B2 Splicing factor 3B subunit 2 yes yes 2;3 0.011121 81.95 By MS/MS By MS/MS 2.14 0.99 2 3 1 1 4 3 69169000 0 17584000 51585000 6524 1248 6803 27816;27817;27818;27819;27820;27821;27822 23571;23572;23573;23574 23574 4 0 7908400 11479000 ISLHPIEDNPIEEISVLSPEDLEAIKNPDSITNQIALLEAR EHNSKIKYWHKEISKISLHPIEDNPIEEIS NPDSITNQIALLEARCHEMKPNLGAIAEYK K I S A R C 3 1 3 3 0 1 6 0 1 7 5 1 0 0 4 4 1 0 0 1 0 0 41 1 4535.3647 Q9NTJ3 Q9NTJ3 1042 1082 SMC4 Structural maintenance of chromosomes protein 4 yes yes 4 9.6553E-50 108.55 By MS/MS 2 0 1 1 16962000 0 0 16962000 6525 2054 6804 27823 23575 23575 1 0 0 3833100 ISLIQIFR DLTGIFMHGKIPTLKISLIQIFRAHLWQKI GKIPTLKISLIQIFRAHLWQKIHESIVMDL K I S F R A 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 1 0 0 0 0 0 0 8 0 988.60695 Q6P2Q9 Q6P2Q9 1571 1578 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 1.1844E-13 179.16 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 37459000 782630 11614000 25062000 6526 1490 6805 27824;27825;27826;27827;27828 23576;23577;23578;23579;23580;23581 23581 6 782630 5612900 5436000 ISLPEAMQLLQDR DGPPHQVLVVPLHSRISLPEAMQLLQDRDT SRISLPEAMQLLQDRDTGTVHLNELGNTQN R I S D R D 1 1 0 1 0 2 1 0 0 1 3 0 1 0 1 1 0 0 0 0 0 0 13 0 1512.797 Q2NL82 Q2NL82 94 106 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.0080225 91.937 By MS/MS 2 0 1 1 12470000 0 12470000 0 6527 1406 6806 27829 23582 23582 1 0 5615200 0 ISLPLPNFSSLNLR EIATYRKLLEGEESRISLPLPNFSSLNLRE RISLPLPNFSSLNLRETNLDSLPLVDTHSK R I S L R E 0 1 2 0 0 0 0 0 0 1 4 0 0 1 2 3 0 0 0 0 0 0 14 0 1569.8879 P08670 P08670 411 424 VIM Vimentin yes yes 2;3 5.4259E-45 219.03 By MS/MS By MS/MS By MS/MS 4.18 2.07 3 3 4 8 4 2 1 2 1 1 15 12 8592500000 30861000 6970900000 1590700000 6528 476 6807 27830;27831;27832;27833;27834;27835;27836;27837;27838;27839;27840;27841;27842;27843;27844;27845;27846;27847;27848;27849;27850;27851;27852;27853;27854;27855;27856;27857 23583;23584;23585;23586;23587;23588;23589;23590;23591;23592;23593;23594;23595;23596;23597;23598;23599;23600;23601;23602;23603;23604;23605;23606;23607;23608;23609;23610;23611;23612;23613;23614;23615;23616;23617;23618;23619;23620;23621;23622;23623;23624;23625;23626;23627;23628;23629;23630;23631;23632;23633;23634;23635;23636;23637 23597 55 24077000 2300100000 264380000 ISLQAIQQLVR QELQRKFHEAQLSEKISLQAIQQLVRKSYQ LSEKISLQAIQQLVRKSYQALALWKLLCEH K I S V R K 1 1 0 0 0 3 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1267.7612 O75694 O75694 776 786 NUP155 Nuclear pore complex protein Nup155 yes yes 2 0.00029601 133.23 By MS/MS 2 0.816 1 1 1 3 15204000 0 0 15204000 6529 281 6808 27858;27859;27860 23638 23638 1 0 0 3324700 ISLSTLQQQLGQPEK YGKVVDLAPLHLDARISLSTLQQQLGQPEK ISLSTLQQQLGQPEKALEALEPMYDPDTLA R I S E K A 0 0 0 0 0 4 1 1 0 1 3 1 0 0 1 2 1 0 0 0 0 0 15 0 1668.9046 Q9Y5Q9 Q9Y5Q9 494 508 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 2 0.00039014 116.01 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 12924000 0 4013000 8911100 6530 2301 6809 27861;27862;27863 23639;23640 23639 1 0 1807100 1925500 ISLVLGGDHSLAIGSISGHAR EQLAGKVAEVKKNGRISLVLGGDHSLAIGS GDHSLAIGSISGHARVHPDLGVIWVDAHTD R I S A R V 2 1 0 1 0 0 0 4 2 3 3 0 0 0 0 4 0 0 0 1 0 0 21 0 2059.1174 P05089 P05089 93 113 ARG1 Arginase-1 yes yes 3;4 3.2061E-08 104.86 By MS/MS 9 0.707 1 2 1 4 25433000 25433000 0 0 6531 422 6810 27864;27865;27866;27867 23641;23642;23643 23643 3 23533000 0 0 ISMPDFDLHLK GPKLKMPEMNIKAPKISMPDFDLHLKGPKV KAPKISMPDFDLHLKGPKVKGDVDVSLPKV K I S L K G 0 0 0 2 0 0 0 0 1 1 2 1 1 1 1 1 0 0 0 0 0 0 11 0 1314.6642 Q09666 Q09666 2579 2589 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 0.054392 44.564 By MS/MS 1 0 1 1 3935200 0 0 3935200 6532 1190 6811 27868 23644 23644 1 0 0 847900 ISMPDVDLHLK GPKFKMPEMNIKVPKISMPDVDLHLKGPNV KVPKISMPDVDLHLKGPNVKGEYDVTMPKV K I S L K G 0 0 0 2 0 0 0 0 1 1 2 1 1 0 1 1 0 0 0 1 0 0 11 0 1266.6642 Q09666 Q09666 818 828 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 3 0.067718 38.58 By MS/MS 1 0 1 1 4946900 0 0 4946900 6533 1190 6812 27869 23645 23645 1 0 0 1065900 ISNIVHISNLVR DPVRTAQVPSPPRGKISNIVHISNLVRPFT RGKISNIVHISNLVRPFTLGQLKELLGRTG K I S V R P 0 1 2 0 0 0 0 0 1 3 1 0 0 0 0 2 0 0 0 2 0 0 12 0 1363.7936 Q9UKV3 Q9UKV3 1010 1021 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 0.0037738 84.352 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 22473000 0 6339000 16134000 6534 2184 6813 27870;27871;27872;27873 23646;23647 23647 2 0 2702300 3351100 ISNIVHISNLVRPFTLGQLK DPVRTAQVPSPPRGKISNIVHISNLVRPFT HISNLVRPFTLGQLKELLGRTGTLVEEAFW K I S L K E 0 1 2 0 0 1 0 1 1 3 3 1 0 1 1 2 1 0 0 2 0 0 20 1 2248.3056 Q9UKV3 Q9UKV3 1010 1029 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 4 0.00015221 73.315 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 34012000 0 17611000 16401000 6535 2184 6814 27874;27875;27876;27877 23648;23649;23650;23651 23649 4 0 7679400 3277400 ISNLLSDYGYHLR IGDATPFNDAVNVQKISNLLSDYGYHLRGN QKISNLLSDYGYHLRGNEVLYNGFTGRKIT K I S L R G 0 1 1 1 0 0 0 1 1 1 3 0 0 0 0 2 0 0 2 0 0 0 13 0 1549.7889 P30876 P30876 1011 1023 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 3 0.00094424 100.02 By MS/MS 2 0.816 1 1 1 3 11759000 0 0 11759000 6536 715 6815 27878;27879;27880 23652 23652 1 0 0 2598200 ISNQFDWALMR KEKDIQEESTFSSRKISNQFDWALMRLDLS SSRKISNQFDWALMRLDLSVRRTGRIPKKL K I S M R L 1 1 1 1 0 1 0 0 0 1 1 0 1 1 0 1 0 1 0 0 0 0 11 0 1379.6656 P42704 P42704 79 89 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.00012867 139.96 By MS/MS 2 0 1 1 5813700 0 0 5813700 6537 808 6816 27881 23653 23653 1 0 0 1313800 ISPGGISQILDLVK HSDPELLKQKLQSYKISPGGISQILDLVKG KISPGGISQILDLVKGTHYQVACQKYFEMI K I S V K G 0 0 0 1 0 1 0 2 0 3 2 1 0 0 1 2 0 0 0 1 0 0 14 0 1438.8395 P49643 P49643 403 416 PRIM2 DNA primase large subunit yes yes 2 0.0021122 101.89 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 14201000 0 7877000 6324200 6538 860 6817 27882;27883;27884 23654;23655 23654 2 0 2614100 1076600 ISPIQKPQGLDPVEILQER GQPSPVLQLQQKQSRISPIQKPQGLDPVEI QKPQGLDPVEILQEREYRLQARIAHRIQEL R I S E R E 0 1 0 1 0 3 2 1 0 3 2 1 0 0 3 1 0 0 0 1 0 0 19 1 2159.195 P51531 P51531 328 346 SMARCA2 Probable global transcription activator SNF2L2 yes yes 3 0.0034908 57.496 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 10425000 0 3352900 7072100 6539 893 6818 27885;27886;27887 23656;23657 23657 2 0 1605900 1523800 ISPTFADAYSNMGNTLK GKLQEALMHYKEAIRISPTFADAYSNMGNT PTFADAYSNMGNTLKEMQDVQGALQCYTRA R I S L K E 2 0 2 1 0 0 0 1 0 1 1 1 1 1 1 2 2 0 1 0 0 0 17 0 1828.8665 O15294 O15294 390 406 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 0.0020732 86.803 By MS/MS 2 0 1 1 7268500 0 0 7268500 6540 175 6819 27888 23658 23658 1 0 0 1642500 ISPTGSYNKPALR KENQIDPPVVARYIRISPTGSYNKPALRLE IRISPTGSYNKPALRLELQGCEVNGCSTPL R I S L R L 1 1 1 0 0 0 0 1 0 1 1 1 0 0 2 2 1 0 1 0 0 0 13 1 1402.7569 CON__Q28107 CON__Q28107 2030 2042 yes yes 2;3 7.3053E-05 138.94 By matching By MS/MS By MS/MS 4.69 1.73 2 1 4 1 2 3 6 2 5 72359000 17359000 16642000 38358000 + 6541 77 6820 27889;27890;27891;27892;27893;27894;27895;27896;27897;27898;27899;27900;27901 23659;23660;23661;23662;23663 23660 5 17773000 8751800 6445200 ISPWLLR WVNVYYEMPDFDVARISPWLLRVELDRKHM MPDFDVARISPWLLRVELDRKHMTDRKLTM R I S L R V 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 7 0 883.52797 P24928 P24928 1207 1213 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.0022842 133.99 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 10960000 968760 4395900 5595700 6542 653 6821 27902;27903;27904;27905 23664;23665 23665 2 968760 2121800 1205700 ISQIQQLNQMPLYPTEK KEFLLELLVSRHERRISQIQQLNQMPLYPT QIQQLNQMPLYPTEKIIWDENIVPTEYYSG R I S E K I 0 0 1 0 0 4 1 0 0 2 2 1 1 0 2 1 1 0 1 0 0 0 17 0 2030.0507 O60306 O60306 415 431 AQR Intron-binding protein aquarius yes yes 2 2.0042E-09 171.21 By MS/MS 2 0 1 1 2700200 0 2700200 0 6543 225 6822 27906 23666 23666 1 0 1216000 0 ISQLEMAR TQEQLALEMAELTARISQLEMARQKKESEA MAELTARISQLEMARQKKESEAVEWQQKAQ R I S A R Q 1 1 0 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 8 0 946.4906 P26038 P26038 428 435 MSN Moesin yes yes 2 0.020722 83.753 By MS/MS 3 0 1 1 28450000 0 28450000 0 6544 664 6823 27907 23667 23667 1 0 12128000 0 ISQSNYIPTQQDVLR QLNDSASYYLNDLDRISQSNYIPTQQDVLR ISQSNYIPTQQDVLRTRVKTTGIVETHFTF R I S L R T 0 1 1 1 0 3 0 0 0 2 1 0 0 0 1 2 1 0 1 1 0 0 15 0 1760.9057 P08754 P08754 162 176 GNAI3 Guanine nucleotide-binding protein G(k) subunit alpha yes yes 2 0.0052087 83.137 By MS/MS By matching 6 0 2 1 1 5840100 0 2432300 3407800 6545 478 6824 27908;27909 23668 23668 1 0 841970 509840 ISRPGDSDDSR IAGHPAFVNYSTSQKISRPGDSDDSRSVNS TSQKISRPGDSDDSRSVNSVLLFTILNPIY K I S S R S 0 2 0 3 0 0 0 1 0 1 0 0 0 0 1 3 0 0 0 0 0 0 11 1 1203.548 P14866 P14866 179 189 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2;3 0.00027266 112.43 By MS/MS By MS/MS 4.67 1.53 1 4 4 3 3 3 10 8 91334000 0 49961000 41373000 6546 565 6825 27910;27911;27912;27913;27914;27915;27916;27917;27918;27919;27920;27921;27922;27923;27924;27925;27926;27927 23669;23670;23671;23672;23673;23674;23675;23676;23677;23678;23679;23680;23681;23682;23683;23684;23685;23686;23687;23688;23689;23690;23691;23692;23693;23694;23695;23696;23697;23698;23699;23700;23701 23676 33 0 19040000 7805500 ISRPMDMYDR YNREMERDMDRDVDRISRPMDMYDRSLDNE RDVDRISRPMDMYDRSLDNEWDRDYGRPLD R I S D R S 0 2 0 2 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 10 1 1282.5798 P49750 P49750 1293 1302 YLPM1 YLP motif-containing protein 1 yes yes 3 0.0472 52.837 By MS/MS 1 0 1 1 17436000 0 0 17436000 6547 865 6826 27928 23702 23702 1 0 0 3756800 ISSIQSIVPALEIANAHR KCEFQDAYVLLSEKKISSIQSIVPALEIAN IQSIVPALEIANAHRKPLVIIAEDVDGEAL K I S H R K 3 1 1 0 0 1 1 0 1 4 1 0 0 0 1 3 0 0 0 1 0 0 18 0 1918.0636 P10809 P10809 251 268 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2;3 1.6901E-22 187.58 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 42608000 0 34063000 8545200 6548 515 6827 27929;27930;27931 23703;23704 23704 2 0 11463000 1395700 ISSLLAELEAIQR FFKMELFEGMRESTKISSLLAELEAIQRNS TKISSLLAELEAIQRNSASQKSVIVSQWTN K I S Q R N 2 1 0 0 0 1 2 0 0 2 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1441.814 Q9UNY4 Q9UNY4 993 1005 TTF2 Transcription termination factor 2 yes yes 2 0.033504 89.731 By matching By MS/MS 2 0.816 1 1 1 1 2 4661400 0 1222300 3439100 6549 2213 6828 27932;27933;27934 23705 23705 0 0 597460 733440 ISSLLEEQFQQGK KKIQKKYDERKKNAKISSLLEEQFQQGKLL AKISSLLEEQFQQGKLLACIASRPGQCGRA K I S G K L 0 0 0 0 0 3 2 1 0 1 2 1 0 1 0 2 0 0 0 0 0 0 13 0 1505.7726 P62241 P62241 158 170 RPS8 40S ribosomal protein S8 yes yes 2;3 1.636E-195 308.15 By MS/MS By MS/MS By MS/MS 6 2.31 1 2 1 2 2 4 1 2 2 7 6 909270000 11110000 286350000 611810000 6550 1008 6829 27935;27936;27937;27938;27939;27940;27941;27942;27943;27944;27945;27946;27947;27948;27949 23706;23707;23708;23709;23710;23711;23712;23713;23714;23715;23716;23717;23718;23719;23720;23721;23722 23710 17 22418000 182590000 138800000 ISSMVVMENVGQQK KADCILYYGFGDIFRISSMVVMENVGQQKL RISSMVVMENVGQQKLYEMVSYCQNISKCR R I S Q K L 0 0 1 0 0 2 1 1 0 1 0 1 2 0 0 2 0 0 0 3 0 0 14 0 1548.764 P46063 P46063 426 439 RECQL ATP-dependent DNA helicase Q1 yes yes 2 1.0644E-17 193.83 By MS/MS By MS/MS 2.6 0.49 2 3 2 3 87673000 0 26059000 61614000 6551 823 6830;6831 27950;27951;27952;27953;27954 23723;23724;23725 23723 402 3 0 11165000 12105000 ISSSKGSLGGGFSSGGFSGGSFSR GGGGCGGGGGVSSLRISSSKGSLGGGFSSG GGFSSGGFSGGSFSRGSSGGGCFGGSSGGY R I S S R G 0 1 0 0 0 0 0 8 0 1 1 1 0 3 0 9 0 0 0 0 0 0 24 1 2209.04 P13645;CON__P13645 P13645 36 59 KRT10 Keratin, type I cytoskeletal 10 yes no 3 2.4367E-16 120.55 By MS/MS By matching 5.12 2.71 1 1 1 1 1 1 1 1 7 1 244210000 242710000 1499500 0 + 6552 56 6832 27955;27956;27957;27958;27959;27960;27961;27962 23726;23727;23728;23729 23727 4 253230000 682220 0 ISSSSFSR RAFSSRSYTSGPGSRISSSSFSRVGSSNFR TSGPGSRISSSSFSRVGSSNFRGGLGGGYG R I S S R V 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 5 0 0 0 0 0 0 8 0 869.4243 CON__P05787;P05787 CON__P05787 33 40 KRT8 Keratin, type II cytoskeletal 8 yes no 2 5.3875E-05 150.17 By MS/MS By MS/MS 5.55 3 1 1 1 2 1 1 1 1 2 6 5 373650000 0 107910000 265740000 + 6553 49 6833 27963;27964;27965;27966;27967;27968;27969;27970;27971;27972;27973 23730;23731;23732;23733;23734;23735;23736;23737 23734 8 0 62288000 44044000 ISSTLYQAAAPVLTPAK TCFIFSMVGLYYINKISSTLYQAAAPVLTP STLYQAAAPVLTPAKVTGKSKKRN______ K I S A K V 4 0 0 0 0 1 0 0 0 1 2 1 0 0 2 2 2 0 1 1 0 0 17 0 1729.9614 Q8N6L1 Q8N6L1 111 127 KRTCAP2 Keratinocyte-associated protein 2 yes yes 2 0.0030383 81.494 By MS/MS 9 0 1 1 11447000 0 0 11447000 6554 1611 6834 27974 23738 23738 1 0 0 3656700 ISSVLAGGSCR GSCGIGGGIGGGSSRISSVLAGGSCRAPST GSSRISSVLAGGSCRAPSTYGGGLSVSSSR R I S C R A 1 1 0 0 1 0 0 2 0 1 1 0 0 0 0 3 0 0 0 1 0 0 11 0 1105.555 CON__P02533;P02533;CON__P08779;P08779 CON__P02533 31 41 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 3.674E-07 157.99 By MS/MS By matching By matching 6 3.27 1 1 1 1 1 1 1 2 7 1 1 58707000 54870000 2715600 1121300 + 6555 35;53 6835 27975;27976;27977;27978;27979;27980;27981;27982;27983 23739;23740;23741;23742;23743 23742 5 57106000 1157700 2452300 ISTEEAIR QYLTGGLVDPEVHGRISTEEAIRKGFIDGR DPEVHGRISTEEAIRKGFIDGRAAQRLQDT R I S I R K 1 1 0 0 0 0 2 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 8 0 917.48181 P15924 P15924 2745 2752 DSP Desmoplakin yes yes 2 0.0044378 101.64 By MS/MS 1 0 1 1 7627300 0 7627300 0 6556 572 6836 27984 23744 23744 1 0 3728100 0 ISTISSVR SDDVFSSSRHESVSKISTISSVRNLTIRSS RHESVSKISTISSVRNLTIRSSSFSDTLEE K I S V R N 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 3 1 0 0 1 0 0 8 0 861.49198 P15924 P15924 2593 2600 DSP Desmoplakin yes yes 2 0.032071 87.435 By MS/MS 1 0 1 1 0 0 0 0 6557 572 6837 27985 23745 23745 1 0 0 0 ISTITALGHEGK FLKDEIKQEEETCKRISTITALGHEGKQLV CKRISTITALGHEGKQLVNGEVSDERVAPN R I S G K Q 1 0 0 0 0 0 1 2 1 2 1 1 0 0 0 1 2 0 0 0 0 0 12 0 1225.6667 Q96T23 Q96T23 428 439 RSF1 Remodeling and spacing factor 1 yes yes 2;3 0.0014716 112.89 By MS/MS By MS/MS 1.57 0.728 4 2 1 3 4 85093000 0 24134000 60959000 6558 1837 6838 27986;27987;27988;27989;27990;27991;27992 23746;23747;23748;23749;23750;23751 23746 6 0 11668000 13080000 ISTLPQLNSALVQDLAK HMTVKNKYATSKHAKISTLPQLNSALVQDL TLPQLNSALVQDLAKAVAKV__________ K I S A K A 2 0 1 1 0 2 0 0 0 1 4 1 0 0 1 2 1 0 0 1 0 0 17 0 1810.02 P14635 P14635 412 428 CCNB1 G2/mitotic-specific cyclin-B1 yes yes 2 0.0029096 82.202 By MS/MS 4 0 1 1 2148900 0 2148900 0 6559 561 6839 27993 23752 23752 1 0 713140 0 ISVFRPGLR VYQLGDVSQKTTWHRISVFRPGLRDVAYQY KTTWHRISVFRPGLRDVAYQYVKKGSRIYL R I S L R D 0 2 0 0 0 0 0 1 0 1 1 0 0 1 1 1 0 0 0 1 0 0 9 1 1043.624 Q04837 Q04837 87 95 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2 2.4032E-06 157.8 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 113050000 0 11632000 101420000 6560 1161 6840 27994;27995;27996;27997 23753;23754;23755;23756 23755 4 0 6999000 26429000 ISVGAPVYMAAVIEYLAAEILELAGNAAR GRLMRYLKKGTFKYRISVGAPVYMAAVIEY YLAAEILELAGNAARDNKKARIAPRHILLA R I S A R D 8 1 1 0 0 0 3 2 0 3 3 0 1 0 1 1 0 0 2 3 0 0 29 0 2974.5838 Q9P0M6 Q9P0M6 41 69 H2AFY2 Core histone macro-H2A.2 yes yes 3 1.5462E-05 54.141 By MS/MS 5 0 1 1 765320 0 0 765320 6561 2117 6841 27998 23757 23757 1 0 0 106750 ISVLPAYLSYDAPWPVR CPRGFLYFNRQGELRISVLPAYLSYDAPWP VLPAYLSYDAPWPVRKIPLRCTAHYVAYHV R I S V R K 2 1 0 1 0 0 0 0 0 1 2 0 0 0 3 2 0 1 2 2 0 0 17 0 1946.0302 Q10570 Q10570 998 1014 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.00052889 96.745 By MS/MS 1 0 1 1 3157700 0 0 3157700 6562 1194 6842 27999 23758 23758 1 0 0 680380 ISVLYSFLR ATLEQNYIVCELQQKISVLYSFLRSHLKKK CELQQKISVLYSFLRSHLKKKSIVFFSSCK K I S L R S 0 1 0 0 0 0 0 0 0 1 2 0 0 1 0 2 0 0 1 1 0 0 9 0 1096.6281 Q13206 Q13206 301 309 DDX10 Probable ATP-dependent RNA helicase DDX10 yes yes 2 5.6176E-17 182.68 By MS/MS 2.5 0.5 1 1 2 5013700 0 0 5013700 6563 1230 6843 28000;28001 23759 23759 1 0 0 1079300 ISVMGGEQAANVLATITK RAYSPRFLYIWPNARISVMGGEQAANVLAT MGGEQAANVLATITKDQRAREGKQFSSADE R I S T K D 3 0 1 0 0 1 1 2 0 2 1 1 1 0 0 1 2 0 0 2 0 0 18 0 1801.9608 Q9HCC0 Q9HCC0 470 487 MCCC2 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial yes yes 2 2.1376E-08 119.87 By MS/MS 4 0 1 1 5655200 0 5655200 0 6564 2009 6844 28002 23760 23760 1 0 1876700 0 ISVNNVLPVFDNLMQQK IAAKFDGILGMAYPRISVNNVLPVFDNLMQ VNNVLPVFDNLMQQKLVDQNIFSFYLSRDP R I S Q K L 0 0 3 1 0 2 0 0 0 1 2 1 1 1 1 1 0 0 0 3 0 0 17 0 1958.0295 P07339 P07339 206 222 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2;3 1.0218E-05 114.24 By MS/MS By MS/MS By MS/MS 6.17 1.82 1 1 3 2 2 1 2 6 3 3 27684000 9270000 9117400 9296600 6565 458 6845 28003;28004;28005;28006;28007;28008;28009;28010;28011;28012;28013;28014 23761;23762;23763;23764;23765;23766;23767;23768;23769 23762 9 7584000 3062000 1693500 ISVNSNNVQSLLDAANQYQIEPVKK PDIIEQLVEFAYTARISVNSNNVQSLLDAA LLDAANQYQIEPVKKMCVDFLKEQVDASNC R I S K K M 2 0 4 1 0 3 1 0 0 2 2 2 0 0 1 3 0 0 1 3 0 0 25 1 2771.4454 Q8IXQ5 Q8IXQ5 107 131 KLHL7 Kelch-like protein 7 yes yes 3 8.2196E-05 62.193 By MS/MS 4 0 1 1 5689000 0 5689000 0 6566 1586 6846 28015 23770 23770 1 0 1888000 0 ISVYYNEASSHK PSGNYVGDSDLQLERISVYYNEASSHKYVP LERISVYYNEASSHKYVPRAILVDLEPGTM R I S H K Y 1 0 1 0 0 0 1 0 1 1 0 1 0 0 0 3 0 0 2 1 0 0 12 0 1396.6623 Q13509 Q13509 47 58 TUBB3 Tubulin beta-3 chain yes yes 3 0.0073412 75.739 By MS/MS By matching 4.5 0.5 1 1 1 1 9670000 0 2457400 7212600 6567 1254 6847 28016;28017 23771 23771 1 0 815520 1006000 ISVYYNEATGGK PTGTYHGDSDLQLDRISVYYNEATGGKYVP LDRISVYYNEATGGKYVPRAILVDLEPGTM R I S G K Y 1 0 1 0 0 0 1 2 0 1 0 1 0 0 0 1 1 0 2 1 0 0 12 0 1300.6299 P07437 P07437 47 58 TUBB Tubulin beta chain yes yes 2 5.8624E-26 205.09 By MS/MS By MS/MS By MS/MS 6.21 2.84 1 1 2 2 3 1 1 2 3 3 3 8 8 2956200000 14027000 1109800000 1832400000 6568 462 6848 28018;28019;28020;28021;28022;28023;28024;28025;28026;28027;28028;28029;28030;28031;28032;28033;28034;28035;28036 23772;23773;23774;23775;23776;23777;23778;23779;23780;23781;23782;23783;23784;23785;23786;23787;23788;23789;23790;23791;23792;23793;23794 23789 23 12265000 521760000 399970000 ISWEEYK VAKVWKDYDRDKDDKISWEEYKQATYGYYL YDRDKDDKISWEEYKQATYGYYLGNPAEFH K I S Y K Q 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 1 0 1 1 0 0 0 7 0 953.44945 Q15293 Q15293 135 141 RCN1 Reticulocalbin-1 yes yes 2 0.055398 76.035 By MS/MS 6 0.816 1 1 1 3 25077000 0 0 25077000 6569 1354 6849 28037;28038;28039 23795 23795 1 0 0 3641100 ISWLEGQPQDAVGR LAVQNEVGLVDNPLKISWLEGQPQDAVGRS KISWLEGQPQDAVGRSHSGLSKGSVLSERD K I S G R S 1 1 0 1 0 2 1 2 0 1 1 0 0 0 1 1 0 1 0 1 0 0 14 0 1554.7791 Q9NVM6 Q9NVM6 244 257 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2 0.0044039 89.548 By MS/MS 6 0 1 1 3649300 0 3649300 0 6570 2067 6850 28040 23796 23796 1 0 1263200 0 ISWVGEAVK KKMHQGKKKKQNKNRISWVGEAVKTDGKKS KQNKNRISWVGEAVKTDGKKSYYKKVCIDA R I S V K T 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 1 0 2 0 0 9 0 987.53893 P26358 P26358 731 739 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.0038318 99.139 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 25737000 0 8344300 17392000 6571 667 6851 28041;28042;28043;28044 23797;23798 23797 2 0 3906100 3676000 ISYAQYEK TMSLDPEEEAEHPIKISYAQYEKYLKSDNM EAEHPIKISYAQYEKYLKSDNMIRITAVCK K I S E K Y 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 2 0 0 0 8 0 1000.4866 Q08188 Q08188 555 562 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.019677 84.568 By MS/MS By matching 6 3.65 2 1 1 1 1 5 1 52115000 49417000 0 2698000 6572 1181 6852 28045;28046;28047;28048;28049;28050 23799;23800;23801 23800 3 58487000 0 581340 ISYIPDEEVSSPSPPQR MEKLSGHQFENYSFKISYIPDEEVSSPSPP YIPDEEVSSPSPPQRAQRGDHSSREQGHAP K I S Q R A 0 1 0 1 0 1 2 0 0 2 0 0 0 0 4 4 0 0 1 1 0 0 17 0 1899.9214 Q9Y6M1 Q9Y6M1 152 168 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 1.1585E-05 138.24 By MS/MS 3 0 1 1 15091000 0 0 15091000 6573 2315 6853 28051 23802 23802 1 0 0 2927000 ISYSGQFLVK SVTPADLEKVFAEHKISYSGQFLVKSGYAF FAEHKISYSGQFLVKSGYAFVDCPDEHWAM K I S V K S 0 0 0 0 0 1 0 1 0 1 1 1 0 1 0 2 0 0 1 1 0 0 10 0 1140.6179 Q9NZI8 Q9NZI8 27 36 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0055831 96.668 By MS/MS By MS/MS 2.25 0.829 1 1 2 2 2 137260000 0 75345000 61912000 6574 2104 6854 28052;28053;28054;28055 23803;23804 23804 2 0 32240000 12132000 ISYSLFTALR LYWVGAGTVAYLALRISYSLFTALRVWGVG YLALRISYSLFTALRVWGVGNEAGVGPGLG R I S L R V 1 1 0 0 0 0 0 0 0 1 2 0 0 1 0 2 1 0 1 0 0 0 10 0 1169.6445 Q53GQ0 Q53GQ0 26 35 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 2 3.6253E-06 153.08 By matching By MS/MS 6.33 0.471 2 1 1 2 6188800 0 520900 5667900 6575 1424 6855 28056;28057;28058 23805 23805 1 0 180320 874320 ITADGAHFELR SPPHCELMAGHLRNRITADGAHFELRLHLI LRNRITADGAHFELRLHLIYLINDVLHHCQ R I T L R L 2 1 0 1 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 0 0 0 11 0 1228.62 Q8IWX8 Q8IWX8 201 211 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 3 0.010435 72.152 By MS/MS 2 0 1 1 15875000 0 0 15875000 6576 1577 6856 28059 23806 23806 1 0 0 3587400 ITAEEMYDIFGK PEVNRILYIRNLPYKITAEEMYDIFGKYGP PYKITAEEMYDIFGKYGPIRQIRVGNTPET K I T G K Y 1 0 0 1 0 0 2 1 0 2 0 1 1 1 0 0 1 0 1 0 0 0 12 0 1415.6643 Q9Y3B4 Q9Y3B4 30 41 SF3B6 Splicing factor 3B subunit 6 yes yes 2 0.00082761 120.09 By MS/MS By MS/MS 9 0 2 1 1 33512000 6531600 0 26980000 6577 2265 6857 28060;28061 23807;23808 23807 2 3666300 0 8618600 ITAFHNAHDLSK PDEDDAYQVLSTLKRITAFHNAHDLSKWDL LKRITAFHNAHDLSKWDLFACNYKLLKTGI R I T S K W 2 0 1 1 0 0 0 0 2 1 1 1 0 1 0 1 1 0 0 0 0 0 12 0 1352.6837 Q8N3U4 Q8N3U4 694 705 STAG2 Cohesin subunit SA-2 yes yes 2;3 0.0021198 99.752 By matching By MS/MS 1.4 0.49 3 2 1 4 30519000 0 1754000 28765000 6578 1603 6858 28062;28063;28064;28065;28066 23809;23810;23811;23812 23810 4 0 857350 6353700 ITAHLVHELRR GAIALGHPLGGSGSRITAHLVHELRRRGGK SGSRITAHLVHELRRRGGKYAVGSACIGGG R I T R R R 1 2 0 0 0 0 1 0 2 1 2 0 0 0 0 0 1 0 0 1 0 0 11 1 1343.7786 P42765 P42765 361 371 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 3 0.038179 51.286 By MS/MS 5 0 1 1 1509300 0 1509300 0 6579 809 6859 28067 23813 23813 1 0 389050 0 ITALDEFATK KHEDFEKSLSAQEEKITALDEFATKLIQNN AQEEKITALDEFATKLIQNNHYAMEDVATR K I T T K L 2 0 0 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 0 0 0 10 0 1107.5812 Q13813 Q13813 523 532 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 3.4428E-14 135.71 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 48761000 0 48761000 0 6580 1268 6860 28068;28069;28070;28071 23814;23815;23816;23817 23816 4 0 23533000 0 ITAPTHVPLQYIGPNQPR VLVPPALQSYLGTDRITAPTHVPLQYIGPN PTHVPLQYIGPNQPRKPGLPGQPAVS____ R I T P R K 1 1 1 0 0 2 0 1 1 2 1 0 0 0 4 0 2 0 1 1 0 0 18 0 2001.0796 Q9NP81 Q9NP81 490 507 SARS2 Serine--tRNA ligase, mitochondrial yes yes 3 6.1337E-09 114.63 By MS/MS 4 0 1 1 6338100 0 6338100 0 6581 2021 6861 28072 23818 23818 1 0 2103400 0 ITDAYLDQYLWYEADK YSHLVPVYDVEPLEKITDAYLDQYLWYEAD TDAYLDQYLWYEADKRRLFPPWIKPADTEP K I T D K R 2 0 0 3 0 1 1 0 0 1 2 1 0 0 0 0 1 1 3 0 0 0 16 0 2005.9309 Q6P2Q9 Q6P2Q9 917 932 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 5.2808E-05 138.89 By MS/MS 1 0 1 1 6635500 0 0 6635500 6582 1490 6862 28073 23819 23819 1 0 0 1429700 ITDAYLDQYLWYEADKR YSHLVPVYDVEPLEKITDAYLDQYLWYEAD DAYLDQYLWYEADKRRLFPPWIKPADTEPP K I T K R R 2 1 0 3 0 1 1 0 0 1 2 1 0 0 0 0 1 1 3 0 0 0 17 1 2162.032 Q6P2Q9 Q6P2Q9 917 933 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 1.94E-06 137.61 By MS/MS 1 0 1 1 9536200 0 0 9536200 6583 1490 6863 28074 23820 23820 1 0 0 2054700 ITDLANLSAANHDAAIFPGGFGAAK SRNVLTESARIARGKITDLANLSAANHDAA NHDAAIFPGGFGAAKNLSTFAVDGKDCKVN K I T A K N 7 0 2 2 0 0 0 3 1 2 2 1 0 2 1 1 1 0 0 0 0 0 25 0 2441.2339 P0DPI2;A0A0B4J2D5 P0DPI2 117 141 yes no 3 1.1549E-05 70.994 By matching By MS/MS 7 0 2 1 1 6762000 0 2327700 4434400 6584 5 6864 28075;28076 23821 23821 1 0 1336600 786850 ITDLYTDLR FTKWVNSHLARVSCRITDLYTDLRDGRMLI ARVSCRITDLYTDLRDGRMLIKLLEVLSGE R I T L R D 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 2 0 1 0 0 0 9 0 1108.5764 Q01082 Q01082 75 83 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 2.7282E-06 153.04 By MS/MS 1 0 1 1 38057000 0 0 38057000 6585 1128 6865 28077 23822 23822 1 0 0 8200000 ITDLYTDLRDGR FTKWVNSHLARVSCRITDLYTDLRDGRMLI SCRITDLYTDLRDGRMLIKLLEVLSGERLP R I T G R M 0 2 0 3 0 0 0 1 0 1 2 0 0 0 0 0 2 0 1 0 0 0 12 1 1436.726 Q01082 Q01082 75 86 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.00026295 116.54 By MS/MS 1.5 0.5 1 1 2 4354400 0 4354400 0 6586 1128 6866 28078;28079 23823 23823 1 0 2090700 0 ITELFAVALPQLLAK LTAKEKKTQLDDRTKITELFAVALPQLLAK ITELFAVALPQLLAKYSVDAEKVTNLLQLP K I T A K Y 3 0 0 0 0 1 1 0 0 1 4 1 0 1 1 0 1 0 0 1 0 0 15 0 1625.9756 Q8N3U4 Q8N3U4 563 577 STAG2 Cohesin subunit SA-2 yes yes 2;3 0.00010092 113.93 By MS/MS By MS/MS 2 0.707 2 4 2 2 6 27941000 0 3056400 24884000 6587 1603 6867 28080;28081;28082;28083;28084;28085;28086;28087 23824;23825;23826;23827;23828;23829 23827 6 0 1376300 5327100 ITELMQVLK LAGREMTRLAGFTARITELMQVLKDLNHGK AGFTARITELMQVLKDLNHGKYERTMVSQQ R I T L K D 0 0 0 0 0 1 1 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 9 0 1073.6155 P28288 P28288 391 399 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2 0.00043447 137.18 By MS/MS 3.5 0.5 1 1 2 7318300 0 7318300 0 6588 688 6868 28088;28089 23830 23830 1 0 2605200 0 ITELTDENVK ______________________________ QPTVRITELTDENVKFIIENTDLAVANSIR R I T V K F 0 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 1 0 0 10 0 1160.5925 P19387 P19387 11 20 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 2 2.5738E-05 144.09 By MS/MS By MS/MS 6 0 2 1 1 20103000 0 0 20103000 6589 606 6869 28090;28091 23831;23832 23831 2 0 0 3007600 ITESDLSQLTASIR TSQLNVGTSTDVSLKITESDLSQLTASIRA KITESDLSQLTASIRAPSGNEEPCLLKRLP K I T I R A 1 1 0 1 0 1 1 0 0 2 2 0 0 0 0 3 2 0 0 0 0 0 14 0 1532.8046 Q14315 Q14315 1969 1982 FLNC Filamin-C yes yes 2;3 6.1579E-45 217.83 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 35066000 0 35066000 0 6590 1298 6870 28092;28093;28094;28095;28096 23833;23834;23835;23836 23833 4 0 16616000 0 ITESEEVVSR RVRSLETENAGLRLRITESEEVVSREVSGI GLRLRITESEEVVSREVSGIKAAYEAELGD R I T S R E 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 2 1 0 0 2 0 0 10 0 1147.5721 P02545 P02545 63 72 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.6613E-06 151.44 By MS/MS By MS/MS By MS/MS 3.12 1.17 1 1 3 2 1 1 4 3 798960000 21630000 76358000 700970000 6591 387 6871 28097;28098;28099;28100;28101;28102;28103;28104 23837;23838;23839;23840;23841;23842;23843;23844 23838 8 24957000 31561000 127460000 ITESSSTKEDLLR ALQCTHYVILWQLAKITESSSTKEDLLRLK AKITESSSTKEDLLRLKKQMRVFCQICQHY K I T L R L 0 1 0 1 0 0 2 0 0 1 2 1 0 0 0 3 2 0 0 0 0 0 13 1 1477.7624 Q8N3U4 Q8N3U4 748 760 STAG2 Cohesin subunit SA-2 yes yes 2 0.06203 91.937 By MS/MS 1.5 0.5 1 1 2 4836800 0 0 4836800 6592 1603 6872 28105;28106 23845 23845 1 0 0 1058400 ITFTALSSEK LPRVCTFRFPSTNIKITFTALSSEKREKQE STNIKITFTALSSEKREKQEASESPVKAVQ K I T E K R 1 0 0 0 0 0 1 0 0 1 1 1 0 1 0 2 2 0 0 0 0 0 10 0 1095.5812 Q01167 Q01167 152 161 FOXK2 Forkhead box protein K2 yes yes 2 0.051907 72.325 By MS/MS 3 0 1 1 6374600 0 0 6374600 6593 1132 6873 28107 23846 23846 1 0 0 1236400 ITGEAFVQFASQELAEK IVPNGITLPVDPEGKITGEAFVQFASQELA GEAFVQFASQELAEKALGKHKERIGHRYIE K I T E K A 3 0 0 0 0 2 3 1 0 1 1 1 0 2 0 1 1 0 0 1 0 0 17 0 1866.9363 P52597 P52597 151 167 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2;3 7.3515E-38 216.81 By MS/MS By MS/MS By MS/MS 4.92 1.14 2 2 5 3 1 1 4 8 161280000 9639300 32661000 118980000 6594 910 6874 28108;28109;28110;28111;28112;28113;28114;28115;28116;28117;28118;28119;28120 23847;23848;23849;23850;23851;23852;23853;23854;23855;23856;23857 23855 11 7722300 8755800 18532000 ITGMLLEIDNSELLHMLESPESLR LFPLIQAMHPTLAGKITGMLLEIDNSELLH NSELLHMLESPESLRSKVDEAVAVLQAHQA K I T L R S 0 1 1 1 0 0 4 1 1 2 6 0 2 0 1 3 1 0 0 0 0 0 24 0 2739.3823 P11940;Q13310 P11940 581 604 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 3 4.0942E-12 104.53 By MS/MS 2.5 0.5 1 1 2 6047700 0 0 6047700 6595 530;1237 6875;6876 28121;28122 23858;23859 23858 231 2 0 0 1260300 ITHQIVDRPGQQTSVIGR KSLCIGATYDVTDSRITHQIVDRPGQQTSV QIVDRPGQQTSVIGRCYVQPQWVFDSVNAR R I T G R C 0 2 0 1 0 3 0 2 1 3 0 0 0 0 1 1 2 0 0 2 0 0 18 1 2004.0865 O00541 O00541 373 390 PES1 Pescadillo homolog yes yes 2;3;4 4.9181E-23 185.33 By MS/MS By MS/MS 2.8 1.28 3 3 5 2 2 6 9 424450000 0 195560000 228880000 6596 127 6877 28123;28124;28125;28126;28127;28128;28129;28130;28131;28132;28133;28134;28135;28136;28137 23860;23861;23862;23863;23864;23865;23866;23867;23868;23869;23870;23871;23872 23862 13 0 82181000 44085000 ITISPLQELTLYNPER EGRNLKKIEQDTDTKITISPLQELTLYNPE TISPLQELTLYNPERTITVKGNVETCAKAE K I T E R T 0 1 1 0 0 1 2 0 0 2 3 0 0 0 2 1 2 0 1 0 0 0 16 0 1886.0149 O00425 O00425 310 325 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 6.6226E-06 156.36 By matching By MS/MS By MS/MS 2.8 0.4 1 4 1 2 2 57359000 1240700 16271000 39847000 6597 121 6878 28138;28139;28140;28141;28142 23873;23874;23875;23876;23877 23877 5 1431500 7041900 7728500 ITISSLQDLSIYNPER EGRNLKKIEHETGTKITISSLQDLSIYNPE TISSLQDLSIYNPERTITVKGTVEACASAE K I T E R T 0 1 1 1 0 1 1 0 0 3 2 0 0 0 1 3 1 0 1 0 0 0 16 0 1847.9629 Q9Y6M1 Q9Y6M1 308 323 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 2.3265E-18 186.46 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 28250000 0 7728700 20521000 6598 2315 6879 28143;28144;28145 23878;23879 23879 2 0 2834200 3980100 ITISSLQDLTLYNPER EGRNLKKVEQDTETKITISSLQDLTLYNPE TISSLQDLTLYNPERTITVKGAIENCCRAE K I T E R T 0 1 1 1 0 1 1 0 0 2 3 0 0 0 1 2 2 0 1 0 0 0 16 0 1861.9785 Q9NZI8 Q9NZI8 310 325 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 5.3782E-26 196.7 By MS/MS By MS/MS 3.25 1.3 1 1 3 1 2 3 5 106980000 0 18427000 88554000 6599 2104 6880 28146;28147;28148;28149;28150;28151;28152;28153 23880;23881;23882;23883;23884;23885;23886;23887;23888 23882 8 0 6617800 16901000 ITITNDK LNVSAVDKSTGKENKITITNDKGRLSKEDI KSTGKENKITITNDKGRLSKEDIERMVQEA K I T D K G 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 0 2 0 0 0 0 0 7 0 803.43888 P54652;P11142;P0DMV9;P0DMV8;P17066 P11142 501 507 HSPA2;HSPA8;HSPA1B;HSPA1A;HSPA6 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 0.00013283 158.38 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 94304000 0 31820000 62484000 6600 517;501;930;582 6881 28154;28155;28156 23889;23890 23889 2 0 13565000 12108000 ITITNDKGR LNVSAVDKSTGKENKITITNDKGRLSKEDI TGKENKITITNDKGRLSKEDIERMVQEAEK K I T G R L 0 1 1 1 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 0 0 0 9 1 1016.5615 P54652;P11142;P0DMV9;P0DMV8;P17066 P11142 501 509 HSPA2;HSPA8;HSPA1B;HSPA1A;HSPA6 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6 no no 2 0.044301 95.741 By matching By MS/MS 2 0.816 1 1 1 2 1 3229000 0 782640 2446300 6601 517;501;930;582 6882 28157;28158;28159 23891 23891 1 0 368600 474470 ITITNDQNR LRVTAEDKGTGNKNKITITNDQNRLTPEEI TGNKNKITITNDQNRLTPEEIERMVNDAEK K I T N R L 0 1 2 1 0 1 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 9 0 1073.5465 P11021 P11021 524 532 HSPA5 78 kDa glucose-regulated protein yes yes 2 7.4516E-05 145.34 By MS/MS By MS/MS By MS/MS 5.4 3.38 1 2 1 1 2 2 1 28467000 3572300 11568000 13327000 6602 516 6883 28160;28161;28162;28163;28164 23892;23893;23894;23895 23894 4 3907500 5018500 2584700 ITKPGSIDSNNQLFAPGGR ISKGSRPIDTSRLTKITKPGSIDSNNQLFA GSIDSNNQLFAPGGRLSWGKGSSGGSGAKP K I T G R L 1 1 2 1 0 1 0 3 0 2 1 1 0 1 2 2 1 0 0 0 0 0 19 1 1971.0174 Q04637 Q04637 1072 1090 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 3 0.0019577 63.443 By MS/MS 1.5 0.5 1 1 2 20552000 0 20552000 0 6603 1159 6884 28165;28166 23896;23897 23896 2 0 9749100 0 ITLAEALLHPFFAGLTPEER FDLMRRMLEFDPAQRITLAEALLHPFFAGL ALLHPFFAGLTPEERSFHTSRNPSR_____ R I T E R S 3 1 0 0 0 0 3 1 1 1 4 0 0 2 2 0 2 0 0 0 0 0 20 0 2224.1892 P49761 P49761 609 628 CLK3 Dual specificity protein kinase CLK3 yes yes 3 1.7259E-06 96.379 By MS/MS 3.5 0.5 1 1 2 6036200 0 0 6036200 6604 867 6885 28167;28168 23898 23898 1 0 0 1013900 ITLDLIR RVEVQVLNIDIPRSRITLDLIRVL______ NIDIPRSRITLDLIRVL_____________ R I T I R V 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 7 0 842.52255 Q8N5C6 Q8N5C6 987 993 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 2 0.00023441 154.11 By MS/MS 2 0 1 1 3305600 0 3305600 0 6605 1606 6886 28169 23899 23899 1 0 1488500 0 ITLDNAYMEK SGTAEVELKKGATLKITLDNAYMEKCDENI GATLKITLDNAYMEKCDENILWLDYKNICK K I T E K C 1 0 1 1 0 0 1 0 0 1 1 1 1 0 0 0 1 0 1 0 0 0 10 0 1196.5747 P14618 P14618 142 151 PKM Pyruvate kinase PKM yes yes 2 0.0030418 103.55 By matching By MS/MS 10 0 2 1 1 15386000 0 1114000 14272000 6606 559 6887 28170;28171 23900 23900 1 0 5635700 31214000 ITLLSALVETR VFEEGTEASAATAVKITLLSALVETRTIVR TAVKITLLSALVETRTIVRFNRPFLMIIVP K I T T R T 1 1 0 0 0 0 1 0 0 1 3 0 0 0 0 1 2 0 0 1 0 0 11 0 1214.7234 P01011 P01011 380 390 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 0.0028769 94.692 By MS/MS 9 0 1 1 8099000 8099000 0 0 6607 368 6888 28172 23901 23901 0 4546000 0 0 ITLPVDFVTADKFDENAK IVKDLMSKAEKNGVKITLPVDFVTADKFDE PVDFVTADKFDENAKTGQATVASGIPAGWM K I T A K T 2 0 1 3 0 0 1 0 0 1 1 2 0 2 1 0 2 0 0 2 0 0 18 1 2022.031 P00558 P00558 280 297 PGK1 Phosphoglycerate kinase 1 yes yes 2;3 6.0084E-30 203.61 By matching By MS/MS By MS/MS 5.5 0.764 4 1 1 1 1 4 46778000 1994000 6969900 37814000 6608 363 6889 28173;28174;28175;28176;28177;28178 23902;23903;23904;23905 23904 3 1597500 1796600 5491700 ITLQDVVSHSK LNLMDIKIGLLVKNKITLQDVVSHSKKLTK VKNKITLQDVVSHSKKLTKKNKEQLSDMMM K I T S K K 0 0 0 1 0 1 0 0 1 1 1 1 0 0 0 2 1 0 0 2 0 0 11 0 1225.6667 P46940 P46940 925 935 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2;3 0.00022313 125.48 By matching By MS/MS By MS/MS 1.57 0.495 3 4 1 2 4 49824000 1863900 17818000 30141000 6609 835 6890 28179;28180;28181;28182;28183;28184;28185 23906;23907;23908;23909 23908 4 1863900 8023800 6659700 ITLRPDPLPER DISTNKVEQIPYGERITLRPDPLPERSTFE YGERITLRPDPLPERSTFETEHAGQRDRYD R I T E R S 0 2 0 1 0 0 1 0 0 1 2 0 0 0 3 0 1 0 0 0 0 0 11 1 1305.7405 P49750 P49750 1662 1672 YLPM1 YLP motif-containing protein 1 yes yes 3 0.0019717 93.959 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 24691000 0 9428100 15263000 6610 865 6891 28186;28187;28188 23910;23911 23911 2 0 4492900 3288700 ITLSKHQNVQLPR MSHLNGHKLHGKPIRITLSKHQNVQLPREG IRITLSKHQNVQLPREGQEDQGLTKDYGNS R I T P R E 0 1 1 0 0 2 0 0 1 1 2 1 0 0 1 1 1 0 0 1 0 0 13 1 1532.8787 P26599 P26599 406 418 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 3 0.0017542 93.011 By MS/MS 4 0 1 1 5407700 0 5407700 0 6611 671 6892 28189 23912 23912 1 0 1794600 0 ITMEYSSSGK AQDIINFFAPLKPVRITMEYSSSGKATGEA LKPVRITMEYSSSGKATGEADVHFETHEDA R I T G K A 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 3 1 0 1 0 0 0 10 0 1101.5012 Q12849 Q12849 429 438 GRSF1 G-rich sequence factor 1 yes yes 2 0.00049145 135.79 By MS/MS 5 0 1 1 5904800 0 5904800 0 6612 1204 6893 28190 23913 23913 1 0 1522100 0 ITMIAEPLEK SSLKCFAETPNKKNKITMIAEPLEKGLAED NKKNKITMIAEPLEKGLAEDIENEVVQITW K I T E K G 1 0 0 0 0 0 2 0 0 2 1 1 1 0 1 0 1 0 0 0 0 0 10 0 1143.6209 Q15029 Q15029 685 694 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0010081 110.76 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 73588000 0 28731000 44857000 6613 1335 6894 28191;28192;28193 23914;23915 23914 2 0 13019000 10137000 ITNLTQQLEQASIVK ELEGMRRSLKEQAIKITNLTQQLEQASIVK ITNLTQQLEQASIVKKRSEDDLRQQRDVLD K I T V K K 1 0 1 0 0 3 1 0 0 2 2 1 0 0 0 1 2 0 0 1 0 0 15 0 1684.9359 P15924 P15924 1612 1626 DSP Desmoplakin yes yes 2 5.5016E-73 241.15 By MS/MS By MS/MS By MS/MS 5.31 3.25 3 2 1 1 1 1 2 1 2 2 8 1 7 135750000 61186000 30821000 43742000 6614 572 6895 28194;28195;28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206;28207;28208;28209 23916;23917;23918;23919;23920;23921;23922;23923;23924;23925;23926;23927 23924 12 69741000 15065000 12687000 ITPENLPQILLQLK SARDLDELSRYPEDKITPENLPQILLQLKR KITPENLPQILLQLKRRRTEEGPTLSYGRD K I T L K R 0 0 1 0 0 2 1 0 0 2 4 1 0 0 2 0 1 0 0 0 0 0 14 0 1618.9658 P43243 P43243 133 146 MATR3 Matrin-3 yes yes 2;3 7.5564E-05 144.77 By MS/MS By MS/MS 2.45 1.23 3 3 3 1 1 6 5 198670000 0 118830000 79843000 6615 812 6896 28210;28211;28212;28213;28214;28215;28216;28217;28218;28219;28220 23928;23929;23930;23931;23932;23933;23934;23935;23936;23937 23929 10 0 52629000 16122000 ITPENLPQILLQLKR SARDLDELSRYPEDKITPENLPQILLQLKR ITPENLPQILLQLKRRRTEEGPTLSYGRDG K I T K R R 0 1 1 0 0 2 1 0 0 2 4 1 0 0 2 0 1 0 0 0 0 0 15 1 1775.0669 P43243 P43243 133 147 MATR3 Matrin-3 yes yes 3 0.00029399 93.206 By MS/MS 2 0 1 1 20896000 0 20896000 0 6616 812 6897 28221 23938;23939 23938 2 0 9410000 0 ITPNLAEFAFSLYR TDTSHHDQDHPTFNKITPNLAEFAFSLYRQ KITPNLAEFAFSLYRQLAHQSNSTNIFFSP K I T Y R Q 2 1 1 0 0 0 1 0 0 1 2 0 0 2 1 1 1 0 1 0 0 0 14 0 1640.8562 P01009 P01009 50 63 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2;3 0.00080025 113.22 By MS/MS 9 0 2 2 6850200 6850200 0 0 6617 367 6898 28222;28223 23940;23941;23942 23941 3 3845000 0 0 ITPSYVAFTPEGER KNGRVEIIANDQGNRITPSYVAFTPEGERL RITPSYVAFTPEGERLIGDAAKNQLTSNPE R I T E R L 1 1 0 0 0 0 2 1 0 1 0 0 0 1 2 1 2 0 1 1 0 0 14 0 1565.7726 P11021 P11021 61 74 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.00088847 111.27 By MS/MS By MS/MS By MS/MS 4.57 3.5 1 1 3 2 1 4 2 84908000 7126600 29018000 48763000 6618 516 6899 28224;28225;28226;28227;28228;28229;28230 23943;23944;23945;23946;23947 23944 5 8222500 27975000 13827000 ITPYDVQLGYSVLSR FGSNSNPYMGTRLFRITPYDVQLGYSVLSR ITPYDVQLGYSVLSRGSCVPHPSRHPLLLL R I T S R G 0 1 0 1 0 1 0 1 0 1 2 0 0 0 1 2 1 0 2 2 0 0 15 0 1709.8988 Q9NU22 Q9NU22 2013 2027 MDN1 Midasin yes yes 2 0.0057948 81.92 By MS/MS 1.5 0.5 1 1 2 7309400 0 7309400 0 6619 2056 6900 28231;28232 23948 23948 1 0 3414600 0 ITQDIFQQLLK SFDIFGRTTTPQQTKITQDIFQQLLKRGFV QQTKITQDIFQQLLKRGFVLQDTVEQLRCE K I T L K R 0 0 0 1 0 3 0 0 0 2 2 1 0 1 0 0 1 0 0 0 0 0 11 0 1345.7606 P56192 P56192 365 375 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 1.4544E-13 179.51 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 24134000 0 11174000 12961000 6620 949 6901 28233;28234;28235;28236 23949;23950 23949 2 0 5048000 2860700 ITQDTLYWNNYK YKPVAIQTYPILGEKITQDTLYWNNYKTPV GEKITQDTLYWNNYKTPVQIKEFGAVSKVD K I T Y K T 0 0 2 1 0 1 0 0 0 1 1 1 0 0 0 0 2 1 2 0 0 0 12 0 1557.7464 Q8TED0 Q8TED0 19 30 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 1.7968E-45 220.39 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 55855000 0 23451000 32403000 6621 1665 6902 28237;28238;28239 23951;23952 23951 2 0 7782700 5458900 ITSEAIGQLHR YRGHTNQDHVHAVWKITSEAIGQLHRSLES AVWKITSEAIGQLHRSLESCPGETVVAEDP K I T H R S 1 1 0 0 0 1 1 1 1 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1223.6622 Q9UNY4 Q9UNY4 538 548 TTF2 Transcription termination factor 2 yes yes 3 0.00083428 96.342 By MS/MS 2 0 1 1 0 0 0 0 6622 2213 6903 28240 23953 23953 1 0 0 0 ITSEALLVTQQLVK LVPPVVACVGDPFYKITSEALLVTQQLVKV KITSEALLVTQQLVKVIRPLDQPSSFDATP K I T V K V 1 0 0 0 0 2 1 0 0 1 3 1 0 0 0 1 2 0 0 2 0 0 14 0 1541.9029 Q86VP6 Q86VP6 535 548 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.033101 67.93 By matching By MS/MS 2.33 0.471 2 1 1 2 6332500 1103200 0 5229300 6623 1554 6904 28241;28242;28243 23954 23954 1 1329300 0 1156700 ITSEIPQTER PEKTVDVAAEKKVVKITSEIPQTERMQKRA KKVVKITSEIPQTERMQKRAERFNVPVSLE K I T E R M 0 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 2 0 0 0 0 0 10 0 1172.6037 P82979 P82979 93 102 SARNP SAP domain-containing ribonucleoprotein yes yes 2 0.00061823 115.7 By matching By MS/MS 5 0.816 1 1 1 2 1 35635000 25752000 9883100 0 6624 1105 6905 28244;28245;28246 23955 23955 1 20449000 3421200 0 ITSEMGSASQANIR PYLEGILSQVIHLEKITSEMGSASQANIRL KITSEMGSASQANIRLTSLKKTLATTLAPR K I T I R L 2 1 1 0 0 1 1 1 0 2 0 0 1 0 0 3 1 0 0 0 0 0 14 0 1463.7038 Q9H583 Q9H583 1792 1805 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 5.2872E-107 267.24 By matching By MS/MS By MS/MS 1.2 0.4 4 1 1 2 2 56679000 1308200 20923000 34447000 6625 1984 6906;6907 28247;28248;28249;28250;28251 23956;23957;23958;23959 23958 688 4 1308200 10227000 7460700 ITSGPFEPDLYK QFKFTVLLMPNGPMRITSGPFEPDLYKSEM PMRITSGPFEPDLYKSEMEVQDAELKALLQ R I T Y K S 0 0 0 1 0 0 1 1 0 1 1 1 0 1 2 1 1 0 1 0 0 0 12 0 1365.6816 Q9UQ80 Q9UQ80 333 344 PA2G4 Proliferation-associated protein 2G4 yes yes 2 4.2677E-05 147.95 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 246800000 0 95730000 151080000 6626 2220 6908 28252;28253;28254;28255;28256 23960;23961;23962;23963;23964;23965 23965 6 0 25721000 21760000 ITSGPFEPDLYKSEMEVQDAELK QFKFTVLLMPNGPMRITSGPFEPDLYKSEM DLYKSEMEVQDAELKALLQSSASRKTQKKK R I T L K A 1 0 0 2 0 1 4 1 0 1 2 2 1 1 2 2 1 0 1 1 0 0 23 1 2625.252 Q9UQ80 Q9UQ80 333 355 PA2G4 Proliferation-associated protein 2G4 yes yes 3 1.3649E-20 135.86 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 38428000 0 19504000 18924000 6627 2220 6909 28257;28258;28259 23966;23967;23968 23966 3 0 5027600 2725700 ITSLLAYR PTPKHECHVSKNANRITSLLAYRAYELTQY VSKNANRITSLLAYRAYELTQYYFYEYGFD R I T Y R A 1 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 0 8 0 935.54402 Q9UK61 Q9UK61 286 293 FAM208A Protein FAM208A yes yes 2 6.4967E-05 149.4 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 10230000 0 5158900 5070700 6628 2175 6910 28260;28261;28262 23969;23970;23971 23969 3 0 2413000 1092600 ITSLTQLTDNLTVLK SINGVRCPFCSKITRITSLTQLTDNLTVLK ITSLTQLTDNLTVLKIIDTAGLSEAVGLLM R I T L K I 0 0 1 1 0 1 0 0 0 1 4 1 0 0 0 1 4 0 0 1 0 0 15 0 1658.9455 Q13049 Q13049 70 84 TRIM32 E3 ubiquitin-protein ligase TRIM32 yes yes 2 0.0069636 79.492 By MS/MS 3 0 1 1 3562100 0 3562100 0 6629 1217 6911 28263 23972 23972 1 0 1518500 0 ITVLEALR EARLGKPSLVRETSRITVLEALRHPIQVSR LVRETSRITVLEALRHPIQVSRRLLSRPQD R I T L R H 1 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 8 0 913.55967 Q5T9A4;Q9NVI7 Q9NVI7 339 346 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 4.2358E-28 199.65 By MS/MS By MS/MS By MS/MS 3.56 1.26 2 3 2 1 1 1 4 4 127770000 7471000 58150000 62145000 6630 2066;1456 6912 28264;28265;28266;28267;28268;28269;28270;28271;28272 23973;23974;23975;23976;23977;23978;23979 23977 6 8619900 22126000 12022000 ITVTSEVPFSK NLGGGVVTIERSKSKITVTSEVPFSKRYLK SKSKITVTSEVPFSKRYLKYLTKKYLKKNN K I T S K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 1 2 2 0 0 2 0 0 11 0 1206.6496 P35268 P35268 70 80 RPL22 60S ribosomal protein L22 yes yes 2 6.7418E-05 142.43 By MS/MS By MS/MS By MS/MS 7.58 1.93 2 1 1 4 2 2 2 7 3 691910000 137890000 179140000 374880000 6631 747 6913 28273;28274;28275;28276;28277;28278;28279;28280;28281;28282;28283;28284 23980;23981;23982;23983;23984;23985 23984 6 108600000 95127000 75191000 ITVVPSAK ______________________________ AHYNFKKITVVPSAKDFIDLTLSKTQRKTP K I T A K D 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 2 0 0 8 0 813.496 Q9BZE4 Q9BZE4 9 16 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.02996 77.923 By MS/MS 3 0 1 1 7468300 0 0 7468300 6632 1941 6914 28285 23986 23986 1 0 0 1448500 ITWLYDNTTGK NFDMPFIFAEVNADRITWLYDNTTGKQWKN NADRITWLYDNTTGKQWKNSVNSHTIGRYI R I T G K Q 0 0 1 1 0 0 0 1 0 1 1 1 0 0 0 0 3 1 1 0 0 0 11 0 1310.6507 Q08188 Q08188 398 408 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 1.6556E-19 192.92 By MS/MS By matching 5.29 3.19 2 1 1 1 1 1 6 1 52852000 51851000 1001000 0 6633 1181 6915 28286;28287;28288;28289;28290;28291;28292 23987;23988;23989;23990;23991;23992 23989 6 67354000 489290 0 ITWSIIR MARRAVETTAQSDNKITWSIIREHMGDILY TTAQSDNKITWSIIREHMGDILYKLSSMKF K I T I R E 0 1 0 0 0 0 0 0 0 3 0 0 0 0 0 1 1 1 0 0 0 0 7 0 887.52289 P38606 P38606 565 571 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.011521 118.01 By matching By MS/MS 3 0 2 1 1 5628900 1330500 0 4298400 6634 773 6916 28293;28294 23993 23993 1 1535100 0 833690 IVAALNAR SETGFLTYLDVSVGKIVAALNARAGRLDVM LDVSVGKIVAALNARAGRLDVMSQNPYNAV K I V A R A 3 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 826.50249 O15213 O15213 309 316 WDR46 WD repeat-containing protein 46 yes yes 2 0.0039561 103.29 By MS/MS 3 0 1 1 3591000 0 3591000 0 6635 173 6917 28295 23994 23994 1 0 1530800 0 IVADKDYSVTANSK MMDLQHGSLFLQTPKIVADKDYSVTANSKI KIVADKDYSVTANSKIVVVTAGVRQQEGES K I V S K I 2 0 1 2 0 0 0 0 0 1 0 2 0 0 0 2 1 0 1 2 0 0 14 1 1509.7675 P07195 P07195 78 91 LDHB L-lactate dehydrogenase B chain yes yes 2 1.821E-44 224.09 By MS/MS By MS/MS 6 0 2 1 1 18377000 0 3757900 14619000 6636 452 6918 28296;28297 23995;23996 23996 2 0 1300900 2187200 IVAEEFLK KEISEMKLSVNARARIVAEEFLKNF_____ SVNARARIVAEEFLKNF_____________ R I V L K N 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 8 0 947.53278 P59998 P59998 159 166 ARPC4 Actin-related protein 2/3 complex subunit 4 yes yes 2 0.026209 79.469 By MS/MS By matching 8.2 1.17 2 1 1 1 1 4 34658000 0 6672100 27986000 6637 960 6919 28298;28299;28300;28301;28302 23997 23997 1 0 3831200 7543200 IVAERPGTNSTGPAPMAPPR WDLNAWTKSAEAFGKIVAERPGTNSTGPAP PGTNSTGPAPMAPPRAPGPLSKQGSGSSQP K I V P R A 3 2 1 0 0 0 1 2 0 1 0 0 1 0 5 1 2 0 0 1 0 0 20 1 2018.0367 Q13263 Q13263 408 427 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3;4 1.12E-25 158.52 By MS/MS By MS/MS 3.18 1.53 2 7 5 4 2 1 1 10 12 488380000 0 189930000 298440000 6638 1235 6920;6921 28303;28304;28305;28306;28307;28308;28309;28310;28311;28312;28313;28314;28315;28316;28317;28318;28319;28320;28321;28322;28323;28324 23998;23999;24000;24001;24002;24003;24004;24005;24006;24007;24008;24009;24010;24011;24012;24013;24014;24015;24016 24012 576 19 0 78201000 58025000 IVAETMNNYLFGER KGYAFVEFESEDVAKIVAETMNNYLFGERL KIVAETMNNYLFGERLLECHFMPPEKVHKE K I V E R L 1 1 2 0 0 0 2 1 0 1 1 0 1 1 0 0 1 0 1 1 0 0 14 0 1655.7977 Q9BYG3 Q9BYG3 101 114 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 7.2974E-18 194.5 By matching By MS/MS By MS/MS 6.17 0.687 1 3 2 1 2 3 127070000 1069300 21856000 104140000 6639 1936 6922 28325;28326;28327;28328;28329;28330 24017;24018;24019;24020;24021 24020 5 1423800 7967700 15899000 IVAHAVEVPAVQSPR TPSAAAVRKPIVLKRIVAHAVEVPAVQSPR IVAHAVEVPAVQSPRRSPRISFFLEKENEP R I V P R R 3 1 0 0 0 1 1 0 1 1 0 0 0 0 2 1 0 0 0 4 0 0 15 0 1571.8784 Q96FF9 Q96FF9 63 77 CDCA5 Sororin yes yes 3 0.0046809 66.485 By MS/MS By MS/MS 8 2 1 1 1 1 14622000 0 4170100 10452000 6640 1782 6923 28331;28332 24022;24023 24023 2 0 21097000 1563700 IVAISEDYPR DFESRYVQNGTYTVKIVAISEDYPRKTITG TYTVKIVAISEDYPRKTITGTVLINVEDIN K I V P R K 1 1 0 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 10 0 1161.603 Q14126 Q14126 469 478 DSG2 Desmoglein-2 yes yes 2 0.012419 87.308 By matching By matching By MS/MS 2.25 0.433 3 1 1 1 2 11985000 2501700 3481000 6001900 6641 1282 6924 28333;28334;28335;28336 24024;24025 24025 2 3014300 1567500 1164100 IVALNAHTFLR VDVIFADVAQPDQTRIVALNAHTFLRNGGH DQTRIVALNAHTFLRNGGHFVISIKANCID R I V L R N 2 1 1 0 0 0 0 0 1 1 2 0 0 1 0 0 1 0 0 1 0 0 11 0 1253.7244 A6NHQ2;P22087 P22087 245 255 FBLL1;FBL rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1;rRNA 2-O-methyltransferase fibrillarin no no 2;3 1.3499E-09 150.17 By MS/MS By MS/MS By MS/MS 6.06 2.25 1 1 2 2 6 2 1 1 2 2 7 9 498930000 24153000 164340000 310430000 6642 627;14 6925 28337;28338;28339;28340;28341;28342;28343;28344;28345;28346;28347;28348;28349;28350;28351;28352;28353;28354 24026;24027;24028;24029;24030;24031;24032;24033;24034;24035;24036;24037;24038;24039;24040;24041 24027 15 32160000 62697000 50977000 IVALSSSLSNAK SRMRYISSQIERPIRIVALSSSLSNAKDVA PIRIVALSSSLSNAKDVAHWLGCSATSTFN R I V A K D 2 0 1 0 0 0 0 0 0 1 2 1 0 0 0 4 0 0 0 1 0 0 12 0 1188.6714 O75643 O75643 1487 1498 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 4.4159E-08 168.83 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 265750000 9800000 91356000 164590000 6643 277 6926 28355;28356;28357;28358;28359;28360 24042;24043;24044 24042 3 9800000 44446000 35482000 IVAPISDSPKPPPQR CSLFPDHPLLQEREKIVAPISDSPKPPPQR IVAPISDSPKPPPQRVTLTLPVLNAARTVI K I V Q R V 1 1 0 1 0 1 0 0 0 2 0 1 0 0 5 2 0 0 0 1 0 0 15 1 1600.8937 O95336 O95336 171 185 PGLS 6-phosphogluconolactonase yes yes 3 0.00033944 73.91 By MS/MS 7 0 1 1 0 0 0 0 6644 319 6927 28361 24045 24045 1 0 0 0 IVASMWDSLGEEQK IKGQNPNATFGEVSKIVASMWDSLGEEQKQ KIVASMWDSLGEEQKQVYKRKTEAAKKEYL K I V Q K Q 1 0 0 1 0 1 2 1 0 1 1 1 1 0 0 2 0 1 0 1 0 0 14 0 1591.7552 O94842;O15405;Q96NM4 O94842 256 269 TOX4;TOX3;TOX2 TOX high mobility group box family member 4;TOX high mobility group box family member 3;TOX high mobility group box family member 2 yes no 2 0.024754 78.653 By matching By matching By MS/MS 2 0.816 1 1 1 1 1 1 6696500 532880 2281600 3882000 6645 300 6928 28362;28363;28364 24046 24046 0 532880 1027400 752920 IVATKPLYVALAQR SPEEATKAVTEMNGRIVATKPLYVALAQRK RIVATKPLYVALAQRKEERQAHLTNQYMQR R I V Q R K 3 1 0 0 0 1 0 0 0 1 2 1 0 0 1 0 1 0 1 2 0 0 14 1 1541.9293 P11940;Q9H361 P11940 357 370 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2;3 8.4581E-05 151.15 By MS/MS By MS/MS 4.45 2.56 2 2 4 4 4 1 1 2 11 9 665430000 0 436330000 229100000 6646 530 6929 28365;28366;28367;28368;28369;28370;28371;28372;28373;28374;28375;28376;28377;28378;28379;28380;28381;28382;28383;28384 24047;24048;24049;24050;24051;24052;24053;24054;24055;24056;24057;24058;24059;24060;24061;24062;24063;24064;24065 24049 19 0 180020000 43894000 IVATLPYIK ARGGQGAKKSAIGQRIVATLPYIKQEVPII SAIGQRIVATLPYIKQEVPIIIVFRALGFV R I V I K Q 1 0 0 0 0 0 0 0 0 2 1 1 0 0 1 0 1 0 1 1 0 0 9 0 1016.627 P30876 P30876 256 264 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 0.043929 73.26 By matching By MS/MS 2 0 2 1 1 6987300 1281000 0 5706300 6647 715 6930 28385;28386 24066 24066 1 1543400 0 1289500 IVDDLKDEAEQYR VELANKVGAAEIISRIVDDLKDEAEQYRKM SRIVDDLKDEAEQYRKMVMETIEKIMGNLG R I V Y R K 1 1 0 3 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 13 1 1592.7682 O75533 O75533 853 865 SF3B1 Splicing factor 3B subunit 1 yes yes 2 1.5148E-24 205.53 By MS/MS 2 0 1 1 9441900 0 0 9441900 6648 270 6931 28387 24067 24067 1 0 0 2133700 IVDDLKDEAEQYRK VELANKVGAAEIISRIVDDLKDEAEQYRKM RIVDDLKDEAEQYRKMVMETIEKIMGNLGA R I V R K M 1 1 0 3 0 1 2 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 14 2 1720.8632 O75533 O75533 853 866 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.00012231 127.76 By matching By MS/MS 1.33 0.471 2 1 1 2 56468000 3595500 0 52873000 6649 270 6932 28388;28389;28390 24068;24069 24068 2 3595500 0 11750000 IVDGPDPENIILILK KVNKAYEFLCTKSAKIVDGPDPENIILILK IVDGPDPENIILILKTQSILFNRHKEDLQP K I V L K T 0 0 1 2 0 0 1 1 0 4 2 1 0 0 2 0 0 0 0 1 0 0 15 0 1647.9447 O75165 O75165 1360 1374 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.059461 57.225 By MS/MS 1 0 1 1 2672300 0 0 2672300 6650 245 6933 28391 24070 24070 1 0 0 575790 IVDQIRPDR ADRMLDMGFEPQIRKIVDQIRPDRQTLMWS EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ K I V D R Q 0 2 0 2 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 1 0 0 9 1 1110.6146 Q92841;P17844 P17844 265 273 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 0.00066417 144.12 By MS/MS 4 0.816 1 1 1 3 34034000 0 34034000 0 6651 588;1725 6934 28392;28393;28394 24071;24072 24071 2 0 13611000 0 IVEAAENEYQTAISENYQTMSDTTFK LTVSNEVQTAKEFIKIVEAAENEYQTAISE AISENYQTMSDTTFKALRRQLPVTRTKIDW K I V F K A 3 0 2 1 0 2 4 0 0 2 0 1 1 1 0 2 4 0 2 1 0 0 26 0 2982.3441 P47755 P47755 231 256 CAPZA2 F-actin-capping protein subunit alpha-2 yes yes 3 2.9803E-20 115.88 By MS/MS By matching 6 0 2 1 1 6700300 0 2376800 4323500 6652 836 6935 28395;28396 24073 24073 1 0 822750 646840 IVEANPLLEAFGNAK YLTESYGTGQDIDDRIVEANPLLEAFGNAK IVEANPLLEAFGNAKTVRNNNSSRFGKFVE R I V A K T 3 0 2 0 0 0 2 1 0 1 2 1 0 1 1 0 0 0 0 1 0 0 15 0 1584.8512 Q9UM54 Q9UM54 182 196 MYO6 Unconventional myosin-VI yes yes 2 0.00028425 144.65 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44761000 0 25308000 19453000 6653 2198 6936 28397;28398;28399;28400 24074;24075;24076;24077;24078 24075 5 0 11568000 4331500 IVEGQDAEVGLSPWQVMLFR DQTEKELFESYIEGRIVEGQDAEVGLSPWQ DAEVGLSPWQVMLFRKSPQELLCGASLISD R I V F R K 1 1 0 1 0 2 2 2 0 1 2 0 1 1 1 1 0 1 0 3 0 0 20 0 2273.1514 CON__P00735 CON__P00735 367 386 yes yes 3 0.0014631 59.9 By MS/MS 2.5 0.5 1 1 2 2859500 0 0 2859500 + 6654 31 6937 28401;28402 24079 24079 1 0 0 585520 IVELPAPADFLSLSSETKPK GLGSAAHGSQPDLRRIVELPAPADFLSLSS APADFLSLSSETKPKLMTPDAFMTPSASLQ R I V P K L 2 0 0 1 0 0 2 0 0 1 3 2 0 1 3 3 1 0 0 1 0 0 20 1 2141.162 Q6P2E9 Q6P2E9 572 591 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.00018916 73.294 By MS/MS By matching 1.67 0.471 1 2 2 1 10535000 0 6386400 4149000 6655 1489 6938 28403;28404;28405 24080;24081 24081 2 0 2924500 937600 IVEPYIAWGYPNLK GTFVKLNKASINMLRIVEPYIAWGYPNLKS RIVEPYIAWGYPNLKSVNELIYKRGYGKIN R I V L K S 1 0 1 0 0 0 1 1 0 2 1 1 0 0 2 0 0 1 2 1 0 0 14 0 1661.8817 P18124 P18124 135 148 RPL7 60S ribosomal protein L7 yes yes 2;3 0.00066974 114.51 By MS/MS By MS/MS By MS/MS 5.33 1.97 1 4 1 2 1 3 932150000 2174900 359140000 570840000 6656 594 6939 28406;28407;28408;28409;28410;28411 24082;24083;24084;24085;24086 24084 5 4197500 124320000 85403000 IVEPYVTWGFPNLK GVFVKVTPQNLKMLRIVEPYVTWGFPNLKS RIVEPYVTWGFPNLKSVRELILKRGQAKVK R I V L K S 0 0 1 0 0 0 1 1 0 1 1 1 0 1 2 0 1 1 1 2 0 0 14 0 1661.8817 Q6DKI1 Q6DKI1 142 155 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2;3 0.00041112 133.75 By MS/MS By MS/MS 6 0.894 1 1 5 3 6 4 197690000 0 36763000 160930000 6657 1471 6940 28412;28413;28414;28415;28416;28417;28418;28419;28420;28421 24087;24088;24089;24090;24091;24092;24093;24094;24095 24089 9 0 13245000 25300000 IVEQDTMPPK ADRMLDMGFEPQIRRIVEQDTMPPKGVRHT PQIRRIVEQDTMPPKGVRHTMMFSATFPKE R I V P K G 0 0 0 1 0 1 1 0 0 1 0 1 1 0 2 0 1 0 0 1 0 0 10 0 1156.5798 O00571;O15523 O00571 364 373 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 4.5918E-06 114.89 By MS/MS 3 0 1 1 0 0 0 0 6658 131 6941 28422 24096 24096 1 0 0 0 IVEQPTVSVTEPK FKVNLDSEQAVKEEKIVEQPTVSVTEPKLA EKIVEQPTVSVTEPKLATPAGLKKSSKKAE K I V P K L 0 0 0 0 0 1 2 0 0 1 0 1 0 0 2 1 2 0 0 3 0 0 13 0 1425.7715 Q15054 Q15054 262 274 POLD3 DNA polymerase delta subunit 3 yes yes 2 0.00029516 136.02 By MS/MS 4 0 1 1 3819200 0 3819200 0 6659 1339 6942 28423 24097 24097 1 0 1267400 0 IVESDVGDSFYIR EVTILAQKKKDVYRRIVESDVGDSFYIRTH RRIVESDVGDSFYIRTHFEYEKESPYGLSF R I V I R T 0 1 0 2 0 0 1 1 0 2 0 0 0 1 0 2 0 0 1 2 0 0 13 0 1498.7304 Q07157 Q07157 510 522 TJP1 Tight junction protein ZO-1 yes yes 2 0.00056878 120.06 By MS/MS 1 0 1 1 3040900 0 3040900 0 6660 1177 6943 28424 24098 24098 1 0 1486300 0 IVETEAYLGPEDEAAHSR VLVRRLPNGTELRGRIVETEAYLGPEDEAA TEAYLGPEDEAAHSRGGRQTPRNRGMFMKP R I V S R G 3 1 0 1 0 0 4 1 1 1 1 0 0 0 1 1 1 0 1 1 0 0 18 0 1985.933 P29372 P29372 121 138 MPG DNA-3-methyladenine glycosylase yes yes 2;3 1.5561E-08 147.66 By MS/MS 6 0.707 1 2 1 4 96711000 0 0 96711000 6661 698 6944 28425;28426;28427;28428 24099;24100;24101 24101 3 0 0 14657000 IVEVLLMK TNEKALEAVFGKYGRIVEVLLMKDRETNKS VFGKYGRIVEVLLMKDRETNKSRGFAFVTF R I V M K D 0 0 0 0 0 0 1 0 0 1 2 1 1 0 0 0 0 0 0 2 0 0 8 0 943.57763 P38159;O75526 P38159 34 41 RBMX;RBMXL2 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2 yes no 2 0.00047622 129.4 By MS/MS By MS/MS By MS/MS 5.38 2.46 1 3 2 2 5 4 2 2 1 2 3 10 11 439500000 17054000 112170000 310280000 6662 771 6945;6946 28429;28430;28431;28432;28433;28434;28435;28436;28437;28438;28439;28440;28441;28442;28443;28444;28445;28446;28447;28448;28449;28450;28451;28452 24102;24103;24104;24105;24106;24107;24108;24109;24110;24111;24112;24113;24114;24115;24116;24117;24118;24119;24120;24121 24104 381 20 13957000 41555000 55539000 IVFAAGNFWGR KWGYTVKGIQKYKAKIVFAAGNFWGRTLSA YKAKIVFAAGNFWGRTLSAISSSTDPTSYD K I V G R T 2 1 1 0 0 0 0 2 0 1 0 0 0 2 0 0 0 1 0 1 0 0 11 0 1236.6404 P04181 P04181 170 180 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 2 2.2846E-26 196.25 By MS/MS By MS/MS 5 0 2 1 1 23150000 0 6703500 16447000 6663 412 6947 28453;28454 24122;24123 24123 2 0 1727900 2294000 IVFQEFR VLEGIRICRQGFPNRIVFQEFRQRYEILTP CRQGFPNRIVFQEFRQRYEILTPNAIPKGF R I V F R Q 0 1 0 0 0 1 1 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 7 0 937.50215 P35580 P35580 719 725 MYH10 Myosin-10 no no 2 0.0016118 148.28 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 93874000 0 51028000 42846000 6664 753 6948 28455;28456;28457 24124;24125 24125 2 0 24942000 9253800 IVGHLTHALK GAVSLGHPIGMSGARIVGHLTHALKQGEYG MSGARIVGHLTHALKQGEYGLASICNGGGG R I V L K Q 1 0 0 0 0 0 0 1 2 1 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1087.6502 P24752 P24752 394 403 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 0.0091185 93.467 By MS/MS 5 0 1 1 0 0 0 0 6665 651 6949 28458 24126 24126 1 0 0 0 IVGLDQVTGMTETAFGSAYK SSDRFVAELWKDVDRIVGLDQVTGMTETAF QVTGMTETAFGSAYKTKKGMFRTVGQLYKE R I V Y K T 2 0 0 1 0 1 1 3 0 1 1 1 1 1 0 1 3 0 1 2 0 0 20 0 2087.0245 P35580 P35580 625 644 MYH10 Myosin-10 yes yes 2;3 1.1576E-120 265.95 By MS/MS By MS/MS 1.64 0.771 6 3 2 6 5 142190000 0 93251000 48939000 6666 753 6950;6951 28459;28460;28461;28462;28463;28464;28465;28466;28467;28468;28469 24127;24128;24129;24130;24131;24132;24133;24134;24135 24131 370 9 0 45292000 10467000 IVGLQYK HKQIMENAEINNIIKIVGLQYKKNYEDEDS AEINNIIKIVGLQYKKNYEDEDSLKTLRYG K I V Y K K 0 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 7 0 819.48544 P11388;Q02880 P11388 513 519 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.021952 99.511 By matching By MS/MS By MS/MS 1 0 3 1 1 1 138140000 7089700 17756000 113290000 6667 524;1150 6952 28470;28471;28472 24136;24137 24136 2 7089700 8678800 24410000 IVGLSTALANAR SRTNFISSHTEKPVRIVGLSTALANARDLA PVRIVGLSTALANARDLADWLNIKQMGLFN R I V A R D 3 1 1 0 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 12 0 1184.6877 Q8N3C0 Q8N3C0 1486 1497 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00018777 132.84 By MS/MS By MS/MS 1 0 2 1 1 22271000 0 16039000 6232200 6668 1602 6953 28473;28474 24138;24139 24138 1 0 7839500 1342800 IVGSKPLYVALAQR SPEEATKAVTEMNGRIVGSKPLYVALAQRK RIVGSKPLYVALAQRKEERKAHLTNQYMQR R I V Q R K 2 1 0 0 0 1 0 1 0 1 2 1 0 0 1 1 0 0 1 2 0 0 14 1 1513.898 Q13310 Q13310 357 370 PABPC4 Polyadenylate-binding protein 4 yes yes 2;3 0.00061757 126.19 By MS/MS By MS/MS 3.69 1.9 1 2 4 3 2 1 8 5 247490000 0 169960000 77530000 6669 1237 6954 28475;28476;28477;28478;28479;28480;28481;28482;28483;28484;28485;28486;28487 24140;24141;24142;24143;24144;24145;24146 24141 7 0 71923000 14441000 IVGYVLAK SWPQLSYIAEDENGKIVGYVLAKMEEDPDD AEDENGKIVGYVLAKMEEDPDDVPHGHITS K I V A K M 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 1 2 0 0 8 0 861.53239 P41227;Q9BSU3 P41227 52 59 NAA10;NAA11 N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11 yes no 2 0.025606 79.939 By matching By MS/MS 6 0 2 1 1 8223600 2775600 0 5448000 6670 794 6955 28488;28489 24147 24147 1 3695800 0 815080 IVIDLFK LFDKHSNTTGITGQRIVIDLFKHQGTITVN TTGITGQRIVIDLFKHQGTITVNEEGTQAA R I V F K H 0 0 0 1 0 0 0 0 0 2 1 1 0 1 0 0 0 0 0 1 0 0 7 0 846.52149 CON__ENSEMBL:ENSBTAP00000018574 CON__ENSEMBL:ENSBTAP00000018574 429 435 yes yes 2 0.06211 74.415 By matching By MS/MS 3.33 0.471 2 1 1 2 6941100 2827200 0 4113900 + 6671 27 6956 28490;28491;28492 24148 24148 1 3261900 0 762210 IVIGYQSHADTATK HIGRVYKERLGLPPKIVIGYQSHADTATKS KIVIGYQSHADTATKSGSTTKNRFVV____ K I V T K S 2 0 0 1 0 1 0 1 1 2 0 1 0 0 0 1 2 0 1 1 0 0 14 0 1502.7729 P06730 P06730 193 206 EIF4E Eukaryotic translation initiation factor 4E yes yes 3 0.001507 83.692 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 35074000 0 14373000 20701000 6672 447 6957 28493;28494;28495;28496 24149;24150;24151 24149 3 0 7575000 3446600 IVILDEADSMTSAAQAALR VSGSRSDGKPCPPFKIVILDEADSMTSAAQ DEADSMTSAAQAALRRTMEKESKTTRFCLI K I V L R R 5 1 0 2 0 1 1 0 0 2 2 0 1 0 0 2 1 0 0 1 0 0 19 0 1974.0092 P35249 P35249 146 164 RFC4 Replication factor C subunit 4 yes yes 2;3 8.987E-32 205.8 By MS/MS By MS/MS 6 0 3 1 2 16878000 0 888100 15990000 6673 744 6958 28497;28498;28499 24152;24153;24154 24153 3 0 307430 2392300 IVILEYQPSK GGTKDYIVVGSDSGRIVILEYQPSKNMFEK SDSGRIVILEYQPSKNMFEKIHQETFGKSG R I V S K N 0 0 0 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 1 1 0 0 10 0 1188.6754 Q15393 Q15393 87 96 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.00022151 122.13 By MS/MS By MS/MS 2.75 1.92 1 2 1 2 2 28829000 0 8079600 20749000 6674 1361 6959 28500;28501;28502;28503 24155;24156;24157 24155 3 0 3638400 4581300 IVIPNEESVVIYYK GVVEKVKNSEEQYNKIVIPNEESVVIYYKI KIVIPNEESVVIYYKIRQQLAKLGKEIEEY K I V Y K I 0 0 1 0 0 0 2 0 0 3 0 1 0 0 1 1 0 0 2 3 0 0 14 0 1664.9025 P42285 P42285 615 628 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.00066474 116.23 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 20219000 0 3783000 16436000 6675 800 6960 28504;28505;28506 24158;24159 24158 2 0 1703600 3704000 IVKPNGEKPDEFESGISQALLELEMNSDLK ______________________________ ISQALLELEMNSDLKAQLRELNITAAKEIE K I V L K A 1 0 2 2 0 1 5 2 0 2 4 3 1 1 2 3 0 0 0 1 0 0 30 2 3329.6701 P62081 P62081 8 37 RPS7 40S ribosomal protein S7 yes yes 3;4 1.0266E-14 79.875 By MS/MS 6.75 0.433 1 3 4 43078000 0 0 43078000 6676 1005 6961;6962 28507;28508;28509;28510 24160;24161;24162 24161 479 3 0 0 7537600 IVLATNIAETSITINDIVHVVDSGLHK DQKAIFQQPPVGVRKIVLATNIAETSITIN TINDIVHVVDSGLHKEERYDLKTKVSCLET K I V H K E 2 0 2 2 0 0 1 1 2 5 2 1 0 0 0 2 3 0 0 4 0 0 27 0 2871.5706 Q7L2E3 Q7L2E3 727 753 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 4 2.5136E-11 87.952 By MS/MS 2 0 1 1 6072200 0 0 6072200 6677 1522 6963 28511 24163 24163 1 0 0 1372200 IVLATNIAETSITINDIVHVVDSGLHKEER DQKAIFQQPPVGVRKIVLATNIAETSITIN DIVHVVDSGLHKEERYDLKTKVSCLETVWV K I V E R Y 2 1 2 2 0 0 3 1 2 5 2 1 0 0 0 2 3 0 0 4 0 0 30 1 3285.7569 Q7L2E3 Q7L2E3 727 756 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 5 7.6668E-13 77.211 By MS/MS 2 0 1 1 1729600 0 0 1729600 6678 1522 6964 28512 24164 24164 1 0 0 390850 IVLDNSVFSEHR MTADLPNELIELLEKIVLDNSVFSEHRNLQ LEKIVLDNSVFSEHRNLQNLLILTAIKADR K I V H R N 0 1 1 1 0 0 1 0 1 1 1 0 0 1 0 2 0 0 0 2 0 0 12 0 1414.7205 Q00610;P53675 Q00610 1011 1022 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 9.4941E-09 173.37 By matching By MS/MS By MS/MS 1.7 0.781 5 3 2 1 6 3 266800000 1898900 74625000 190280000 6679 1125 6965 28513;28514;28515;28516;28517;28518;28519;28520;28521;28522 24165;24166;24167;24168;24169;24170;24171 24169 7 1898900 34417000 41384000 IVLFLQK TLFTLEELRAQMLIRIVLFLQKVWRGTLAR LRAQMLIRIVLFLQKVWRGTLARMRYKRTK R I V Q K V 0 0 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 0 1 0 0 7 0 859.55312 O94832 O94832 701 707 MYO1D Unconventional myosin-Id yes yes 2 0.027632 94.669 By MS/MS 1.5 0.5 1 1 2 4404200 0 0 4404200 6680 299 6966 28523;28524 24172 24172 1 0 0 989260 IVLHPDTEHSK LGELLQQFGELKYVRIVLHPDTEHSKGCAF KYVRIVLHPDTEHSKGCAFAQFMTQEAAQK R I V S K G 0 0 0 1 0 0 1 0 2 1 1 1 0 0 1 1 1 0 0 1 0 0 11 0 1274.6619 Q9NW13 Q9NW13 366 376 RBM28 RNA-binding protein 28 yes yes 3 0.069022 37.995 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 7030900 0 1255000 5775900 6681 2075 6967 28525;28526 24173;24174 24174 2 0 565150 1120200 IVLLDSSLEYK DVTHPRMRRYIKNPRIVLLDSSLEYKKGES KNPRIVLLDSSLEYKKGESQTDIEITREED R I V Y K K 0 0 0 1 0 0 1 0 0 1 3 1 0 0 0 2 0 0 1 1 0 0 11 0 1278.7071 P49368 P49368 238 248 CCT3 T-complex protein 1 subunit gamma yes yes 2 6.1266E-05 142.92 By matching By MS/MS By MS/MS 5.2 1.17 2 1 1 1 1 1 3 16029000 3643900 7023900 5360900 6682 854 6968 28527;28528;28529;28530;28531 24175;24176 24175 2 2842900 2331000 812960 IVLNSIEQYQAHVSGFK TDFPAGKGYPCKTCKIVLNSIEQYQAHVSG LNSIEQYQAHVSGFKHKNQSPKTVASSLGQ K I V F K H 1 0 1 0 0 2 1 1 1 2 1 1 0 1 0 2 0 0 1 2 0 0 17 0 1932.0105 Q9UL40 Q9UL40 246 262 ZNF346 Zinc finger protein 346 yes yes 3 9.1835E-06 102.78 By MS/MS By MS/MS 6 0 2 1 1 20481000 0 11684000 8796600 6683 2187 6969 28532;28533 24177;24178 24177 2 0 4044600 1316100 IVLPTEK EIVSEAESHVSGISRIVLPTEKTTGARRSK SHVSGISRIVLPTEKTTGARRSKAKSLTDP R I V E K T 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 1 0 0 1 0 0 7 0 798.48511 Q5QJE6 Q5QJE6 153 159 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.071548 72.138 By MS/MS 3 0 1 1 4173200 0 0 4173200 6684 1442 6970 28534 24179 24179 1 0 0 809410 IVLQIDNAR DLRAQIFANTVDNARIVLQIDNARLAADDF TVDNARIVLQIDNARLAADDFRVKYETELA R I V A R L 1 1 1 1 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1040.5978 CON__P08727;P08727;CON__P05784;P05783 P05783 150 158 KRT19;KRT18 Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 18 no no 2 1.7065E-23 190.08 By MS/MS By MS/MS By MS/MS 4.72 2.8 3 2 2 2 3 2 2 1 1 2 8 8 2522400000 52274000 1212100000 1258000000 + 6685 436;51;48 6971 28535;28536;28537;28538;28539;28540;28541;28542;28543;28544;28545;28546;28547;28548;28549;28550;28551;28552 24180;24181;24182;24183;24184;24185;24186;24187;24188;24189;24190;24191;24192;24193;24194 24184 14 42179000 335970000 199680000 IVLTNPVCTEVGEK STGGRVSAVKADLGKIVLTNPVCTEVGEKI KIVLTNPVCTEVGEKIALSRRVEKHWRLIG K I V E K I 0 0 1 0 1 0 2 1 0 1 1 1 0 0 1 0 2 0 0 3 0 0 14 0 1557.8072 P41091;Q2VIR3 P41091 427 440 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.00040537 126.03 By MS/MS By MS/MS 3.17 1.34 1 1 1 2 1 3 3 62713000 0 10171000 52542000 6686 790 6972 28553;28554;28555;28556;28557;28558 24195;24196;24197 24196 3 0 4011200 8352300 IVNSAQTGSFK PTPAEIPRAIQSLKKIVNSAQTGSFKQLTV SLKKIVNSAQTGSFKQLTVKEAVLNGLVAT K I V F K Q 1 0 1 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 0 1 0 0 11 0 1150.5982 O75964 O75964 56 66 ATP5L ATP synthase subunit g, mitochondrial yes yes 2 0.0020473 97.565 By matching By MS/MS 10 0 2 1 1 6010200 1333600 0 4676600 6687 294 6973 28559;28560 24198 24198 0 2429700 0 10228000 IVNTQEQLNHR IAEQLLKANPPGKDRIVNTQEQLNHRWQQF GKDRIVNTQEQLNHRWQQFRRLADGKKAAL R I V H R W 0 1 2 0 0 2 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1350.7004 O15020 O15020 929 939 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 0.049365 46.844 By MS/MS By matching 1.5 0.5 1 1 1 1 3214700 0 2618300 596420 6688 160 6974 28561;28562 24199 24199 1 0 1279800 134780 IVPGQFLAVDPK EKIHQETFGKSGCRRIVPGQFLAVDPKGRA CRRIVPGQFLAVDPKGRAVMISAIEKQKLV R I V P K G 1 0 0 1 0 1 0 1 0 1 1 1 0 1 2 0 0 0 0 2 0 0 12 0 1282.7285 Q15393 Q15393 115 126 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.053493 72.2 By MS/MS 2 0 1 1 20213000 0 20213000 0 6689 1361 6975 28563 24200 24200 1 0 9102000 0 IVPNVLLEQGK LPNDPMFKLVAQLYKIVPNVLLEQGKAKNP QLYKIVPNVLLEQGKAKNPWPNVDAHSGVL K I V G K A 0 0 1 0 0 1 1 1 0 1 2 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.7129 O75390 O75390 383 393 CS Citrate synthase, mitochondrial yes yes 2 0.022614 82.749 By MS/MS By matching 10 0 2 1 1 3271900 0 1444100 1827800 6690 257 6976 28564;28565 24201 24201 1 0 7306200 3997500 IVQAEGEAEAAK AQFLVEKAKQEQRQKIVQAEGEAEAAKMLG RQKIVQAEGEAEAAKMLGEALSKNPGYIKL K I V A K M 4 0 0 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1214.6143 Q99623 Q99623 225 236 PHB2 Prohibitin-2 yes yes 2 0.00018302 133.23 By matching By MS/MS 6 0 2 1 1 54674000 0 7487600 47187000 6691 1855 6977 28566;28567 24202 24202 1 0 2591900 7059600 IVQISGNSMPR GMITQHSSNASPINRIVQISGNSMPRGSGS PINRIVQISGNSMPRGSGSGFKPFKGGPPR R I V P R G 0 1 1 0 0 1 0 1 0 2 0 0 1 0 1 2 0 0 0 1 0 0 11 0 1200.6285 Q9NWH9 Q9NWH9 1007 1017 SLTM SAFB-like transcription modulator yes yes 2 4.5197E-07 156.62 By MS/MS 2 0 1 1 8841400 0 0 8841400 6692 2078 6978 28568 24203 24203 1 0 0 1998000 IVQMTEAEVR LITRLLEVRGCRPGKIVQMTEAEVRGLCIK CRPGKIVQMTEAEVRGLCIKSREIFLSQPI K I V V R G 1 1 0 0 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 2 0 0 10 0 1174.6016 P62140 P62140 26 35 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 2 3.8991E-07 159.37 By MS/MS By MS/MS By MS/MS 6.2 0.4 4 1 1 1 3 66593000 2840000 10495000 53258000 6693 1007 6979;6980 28569;28570;28571;28572;28573 24204;24205;24206;24207 24206 480 4 3781500 3632900 8149200 IVQTYHVNMAGTNPYTTITPQEINGK KERLAILGIHNEVSKIVQTYHVNMAGTNPY TNPYTTITPQEINGKWDHVRQLVPRRDQAL K I V G K W 1 0 3 0 0 2 1 2 1 3 0 1 1 0 2 0 5 0 2 2 0 0 26 0 2889.4331 P12814 P12814 578 603 ACTN1 Alpha-actinin-1 yes yes 3 3.0265E-20 115.79 By MS/MS 2 0 1 1 10979000 0 10979000 0 6694 540 6981 28574 24208 24208 1 0 4944000 0 IVQVALNGLENILR CIKPLCDLLTVMDSKIVQVALNGLENILRL KIVQVALNGLENILRLGEQEAKRNGTGINP K I V L R L 1 1 2 0 0 1 1 1 0 2 3 0 0 0 0 0 0 0 0 2 0 0 14 0 1550.9144 P52294;O60684;O15131 P52294 439 452 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 2;3 1.3318E-24 196.48 By matching By MS/MS By MS/MS 3.8 0.4 1 4 1 2 2 66955000 837650 44430000 21688000 6695 904;167 6982 28575;28576;28577;28578;28579 24209;24210;24211;24212 24212 4 653520 14745000 3810900 IVSAQSLAEDDVE VFQMLLTKLPTISQRIVSAQSLAEDDVE__ QRIVSAQSLAEDDVE_______________ R I V V E - 2 0 0 2 0 1 2 0 0 1 1 0 0 0 0 2 0 0 0 2 0 0 13 0 1374.6515 Q15388 Q15388 133 145 TOMM20 Mitochondrial import receptor subunit TOM20 homolog yes yes 2 0.003821 103.7 By MS/MS 9 0 1 1 76274000 76274000 0 0 6696 1360 6983 28580 24213 24213 1 42813000 0 0 IVSLEPAYPPVFYLNK DADEPNTLNSKISYRIVSLEPAYPPVFYLN VSLEPAYPPVFYLNKDTGEIYTTSVTLDRE R I V N K D 1 0 1 0 0 0 1 0 0 1 2 1 0 1 3 1 0 0 2 2 0 0 16 0 1849.0026 Q14126 Q14126 200 215 DSG2 Desmoglein-2 yes yes 2 0.0020401 89.827 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 11858000 0 3129100 8729000 6697 1282 6984 28581;28582;28583;28584 24214;24215 24215 2 0 1427000 1867300 IVSLFAEHNDLQYAAPGGLIGVGTK KDSEGKLMCKPIFSKIVSLFAEHNDLQYAA LQYAAPGGLIGVGTKIDPTLCRADRMVGQV K I V T K I 3 0 1 1 0 1 1 4 1 2 3 1 0 1 1 1 1 0 1 2 0 0 25 0 2569.354 P41091;Q2VIR3 P41091 318 342 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 5.0464E-17 109.23 By MS/MS By MS/MS 4.5 1.26 2 1 1 2 4 2 191170000 0 145270000 45899000 6698 790 6985 28585;28586;28587;28588;28589;28590 24216;24217;24218;24219;24220 24217 5 0 44902000 7733200 IVSMTLDKEYDVAVQAIK LNSKLELFTSRFKDRIVSMTLDKEYDVAVQ MTLDKEYDVAVQAIKLLTLVLQSSEEVLTA R I V I K L 2 0 0 2 0 1 1 0 0 2 1 2 1 0 0 1 1 0 1 3 0 0 18 1 2022.0707 Q8N3U4 Q8N3U4 375 392 STAG2 Cohesin subunit SA-2 yes yes 2;3 1.8554E-15 176.25 By MS/MS 1.67 0.471 1 2 3 43352000 0 0 43352000 6699 1603 6986 28591;28592;28593 24221;24222;24223 24223 3 0 0 9731100 IVSQLLTLMDGLK IAPKREKTHGEVERRIVSQLLTLMDGLKQR RRIVSQLLTLMDGLKQRAHVIVMAATNRPN R I V L K Q 0 0 0 1 0 1 0 1 0 1 4 1 1 0 0 1 1 0 0 1 0 0 13 0 1429.8214 P55072 P55072 324 336 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.00028508 134.75 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 10254000 0 4020600 6232900 6700 936 6987 28594;28595 24224;24225 24224 2 0 1810500 1208900 IVSRPEELREDDVGTGAGLLEIK RKTDNNRIARACGARIVSRPEELREDDVGT REDDVGTGAGLLEIKKIGDEYFTFITDCKD R I V I K K 1 2 0 2 0 0 4 3 0 2 3 1 0 0 1 1 1 0 0 2 0 0 23 2 2495.3231 P49368 P49368 331 353 CCT3 T-complex protein 1 subunit gamma yes yes 4 6.1865E-12 109.05 By MS/MS 4 0 1 1 9096300 0 0 9096300 6701 854 6988 28596 24226 24226 1 0 0 1485700 IVSSSDVGHDEYSTQSLVK ADADDIDAWMLDILKIVSSSDVGHDEYSTQ SDVGHDEYSTQSLVKKHKDVAEEIANYRPT K I V V K K 0 0 0 2 0 1 1 1 1 1 1 1 0 0 0 5 1 0 1 3 0 0 19 0 2049.9855 Q01082 Q01082 766 784 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 5.335E-135 275.83 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 183340000 0 55062000 128280000 6702 1128 6989 28597;28598;28599;28600 24227;24228;24229 24228 3 0 26914000 27709000 IVVFQYSDGK TAMVYPEEAEPKQGRIVVFQYSDGKLQTVA PKQGRIVVFQYSDGKLQTVAEKEVKGAVYS R I V G K L 0 0 0 1 0 1 0 1 0 1 0 1 0 1 0 1 0 0 1 2 0 0 10 0 1154.5972 Q16531 Q16531 848 857 DDB1 DNA damage-binding protein 1 yes yes 2 0.00034118 138.1 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 44196000 0 11533000 32663000 6703 1387 6990 28601;28602;28603 24230;24231 24230 2 0 5193500 7235600 IVVNLTGR YIGEFEIIDDHRAGKIVVNLTGRLNKCGVI DDHRAGKIVVNLTGRLNKCGVISPRFDVQL K I V G R L 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 2 0 0 8 0 870.5287 P62244 P62244 61 68 RPS15A 40S ribosomal protein S15a yes yes 2 0.00014529 143.85 By MS/MS By MS/MS By MS/MS 8.27 1.21 1 2 3 3 2 2 5 4 722920000 37703000 241150000 444060000 6704 1009 6991 28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614 24232;24233;24234;24235;24236;24237;24238;24239;24240;24241;24242;24243 24243 11 23234000 201860000 165130000 IVVVTAGVR KIVADKDYSVTANSKIVVVTAGVRQQEGES VTANSKIVVVTAGVRQQEGESRLNLVQRNV K I V V R Q 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 4 0 0 9 0 912.57565 P07195 P07195 92 100 LDHB L-lactate dehydrogenase B chain yes yes 2 4.8494E-07 154.35 By MS/MS By matching By MS/MS 6.67 2.56 1 2 1 1 1 2 1 3 54484000 18175000 336840 35972000 6705 452 6992 28615;28616;28617;28618;28619;28620 24244;24245;24246 24245 2 24044000 269730 14882000 IWDILGDRPSLVHSR IKGCLVTASADKYVKIWDILGDRPSLVHSR IWDILGDRPSLVHSRDMKMGVLFCSSCCPD K I W S R D 0 2 0 2 0 0 0 1 1 2 2 0 0 0 1 2 0 1 0 1 0 0 15 1 1762.9479 Q13610 Q13610 412 426 PWP1 Periodic tryptophan protein 1 homolog yes yes 4 8.8061E-05 111.43 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 16419000 0 4334600 12084000 6706 1262 6993 28621;28622;28623;28624;28625 24247;24248;24249 24248 3 0 1373000 2118600 IWDLASGK GNQWFVTGSADRTIKIWDLASGKLKLSLTG SADRTIKIWDLASGKLKLSLTGHISTVRGV K I W G K L 1 0 0 1 0 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 8 0 888.47052 O43660 O43660 230 237 PLRG1 Pleiotropic regulator 1 yes yes 2 0.067621 73.26 By MS/MS 4 0 1 1 0 0 0 0 6707 205 6994 28626 24250 24250 1 0 0 0 IWDLEGK PNRYWLCAATGPSIKIWDLEGKIIVDELKQ AATGPSIKIWDLEGKIIVDELKQEVISTSS K I W G K I 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 0 0 1 0 0 0 0 7 0 859.44397 P63244 P63244 258 264 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 0.027939 94.407 By MS/MS By matching 6.33 0.471 2 1 1 2 36962000 0 6198200 30764000 6708 1068 6995 28627;28628;28629 24251 24251 1 0 2145600 4673900 IWDLQGSEEPVFR HPHVVATGGKENALKIWDLQGSEEPVFRAK LKIWDLQGSEEPVFRAKNVRNDWLDLRVPI K I W F R A 0 1 0 1 0 1 2 1 0 1 1 0 0 1 1 1 0 1 0 1 0 0 13 0 1574.7729 Q6RFH5 Q6RFH5 157 169 WDR74 WD repeat-containing protein 74 yes yes 2 1.8855E-07 169.76 By MS/MS 5 0 1 1 18154000 0 0 18154000 6709 1499 6996 28630 24252 24252 1 0 0 2532200 IWDPTPSHTPAGAATPGR RAKGSETPGATPGSKIWDPTPSHTPAGAAT PTPSHTPAGAATPGRGDTPGHATPGHGGAT K I W G R G 3 1 0 1 0 0 0 2 1 1 0 0 0 0 4 1 3 1 0 0 0 0 18 0 1830.9013 O75533 O75533 253 270 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 6.6825E-09 128.68 By MS/MS By MS/MS 2 0 3 1 2 57083000 0 13195000 43888000 6710 270 6997 28631;28632;28633 24253;24254;24255 24255 3 0 5942000 9917800 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR RAKGSETPGATPGSKIWDPTPSHTPAGAAT GHATPGHGGATSSARKNRWDETPKTERDTP K I W A R K 6 2 0 2 0 0 0 7 3 1 0 0 0 0 6 3 6 1 0 0 0 0 37 1 3545.6785 O75533 O75533 253 289 SF3B1 Splicing factor 3B subunit 1 yes yes 5 1.3025E-19 74.846 By MS/MS 2 0 1 1 9975000 0 9975000 0 6711 270 6998 28634 24256 24256 1 0 4491900 0 IWDTTQKEHLLK SGFYIASGDVSGKLRIWDTTQKEHLLKYEY KLRIWDTTQKEHLLKYEYQPFAGKIKDIAW R I W L K Y 0 0 0 1 0 1 1 0 1 1 2 2 0 0 0 0 2 1 0 0 0 0 12 1 1510.8144 O75083 O75083 84 95 WDR1 WD repeat-containing protein 1 yes yes 3 0.026154 61.235 By MS/MS 4 0 1 1 4428500 0 4428500 0 6712 241 6999 28635 24257 24257 1 0 1469700 0 IWHHTFYNELR PIEHGIVTNWDDMEKIWHHTFYNELRVAPE DMEKIWHHTFYNELRVAPEEHPVLLTEAPL K I W L R V 0 1 1 0 0 0 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 0 11 0 1514.7419 P60709;A5A3E0;P63261;P0CG38;P0CG39;P68032;P68133;Q6S8J3;Q9BYX7 P60709 85 95 ACTB;POTEF;ACTG1;POTEI;POTEJ;ACTC1;ACTA1;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, alpha cardiac muscle 1;Actin, alpha skeletal muscle;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 2;3 1.9096E-13 177.7 By MS/MS By MS/MS By MS/MS 4.86 2.4 3 3 3 3 4 5 2 3 2 3 9 16 3671300000 141830000 1402900000 2126500000 6713 966;1069;1075;1501;499 7000 28636;28637;28638;28639;28640;28641;28642;28643;28644;28645;28646;28647;28648;28649;28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663 24258;24259;24260;24261;24262;24263;24264;24265;24266;24267;24268;24269;24270;24271;24272;24273;24274;24275;24276;24277;24278;24279;24280;24281;24282;24283;24284;24285;24286;24287;24288;24289 24281 29 118210000 390900000 352410000 IWIFDGPTGEGR REPLLVTNGADNALRIWIFDGPTGEGRLLR ALRIWIFDGPTGEGRLLRFRMGHSAPLTNI R I W G R L 0 1 0 1 0 0 1 3 0 2 0 0 0 1 1 0 1 1 0 0 0 0 12 0 1346.6619 Q8NI36 Q8NI36 359 370 WDR36 WD repeat-containing protein 36 yes yes 2 1.1921E-05 156.83 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 17908000 0 8945100 8962700 6714 1648 7001 28664;28665;28666 24290;24291 24291 2 0 4082500 1931200 IWNLTQR KLATVLSGACDGEVRIWNLTQRNCIRTIQA GACDGEVRIWNLTQRNCIRTIQAHEGFVRG R I W Q R N 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 7 0 929.5083 Q9NV06 Q9NV06 93 99 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 2 0.0023506 135.87 By MS/MS By MS/MS 3.8 1.17 1 1 1 2 3 2 35659000 0 23818000 11841000 6715 2062 7002 28667;28668;28669;28670;28671 24292;24293;24294 24294 3 0 9932900 1758200 IWPLYLR FDRALRALPITQHSRIWPLYLRFLRSHPLP LPITQHSRIWPLYLRFLRSHPLPETAVRGY R I W L R F 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 0 0 1 1 0 0 0 7 0 959.55927 Q9HCS7 Q9HCS7 148 154 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.016829 105.42 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 7824500 0 2002000 5822500 6716 2014 7003 28672;28673;28674 24295;24296;24297 24295 3 0 853450 1129300 IWSHVHSHLR CNIIQFTKPAETLSKIWSHVHSHLRHPHNW ETLSKIWSHVHSHLRHPHNWVWLTAAQIFG K I W L R H 0 1 0 0 0 0 0 0 3 1 1 0 0 0 0 2 0 1 0 1 0 0 10 0 1270.6683 O75691 O75691 2464 2473 UTP20 Small subunit processome component 20 homolog yes yes 3 0.027823 57.348 By MS/MS 1.5 0.5 1 1 2 2194900 0 0 2194900 6717 280 7004 28675;28676 24298 24298 1 0 0 474140 IWSLEGK AEEWILTGSYDKTSRIWSLEGKSIMTIVGH GSYDKTSRIWSLEGKSIMTIVGHTDVVKDV R I W G K S 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 0 1 0 0 0 0 7 0 831.44905 Q9GZL7 Q9GZL7 125 131 WDR12 Ribosome biogenesis protein WDR12 yes yes 2 0.071548 72.138 By matching By MS/MS 3.2 1.17 2 1 1 1 1 4 38969000 1112200 0 37856000 6718 1949 7005 28677;28678;28679;28680;28681 24299 24299 1 1340100 0 6778700 IWSVPNASCVQVVR SQDLVFSASPDATIRIWSVPNASCVQVVRA RIWSVPNASCVQVVRAHESAVTGLSLHATG R I W V R A 1 1 1 0 1 1 0 0 0 1 0 0 0 0 1 2 0 1 0 4 0 0 14 0 1613.8348 Q9UMS4 Q9UMS4 290 303 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 0.00062162 141.95 By matching By MS/MS 3 0.816 1 1 1 1 2 36611000 3459700 0 33151000 6719 2199 7006 28682;28683;28684 24300 24300 1 4168500 0 5649400 IWTHPGWSPLK HGNFLLTGAYDNTAKIWTHPGWSPLKTLAG NTAKIWTHPGWSPLKTLAGHEGKVMGLDIS K I W L K T 0 0 0 0 0 0 0 1 1 1 1 1 0 0 2 1 1 2 0 0 0 0 11 0 1320.6979 O43172 O43172 476 486 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 0.041548 50.648 By matching By MS/MS By MS/MS 4 0 3 1 1 1 23783000 951020 9791700 13040000 6720 189 7007 28685;28686;28687 24301;24302 24302 2 741970 3249500 2129900 IYADTFGDINYQEFAK SSQYSICFTLGSFAKIYADTFGDINYQEFA YADTFGDINYQEFAKRLWGDIYFNPKTRKF K I Y A K R 2 0 1 2 0 1 1 1 0 2 0 1 0 2 0 0 1 0 2 0 0 0 16 0 1893.8785 Q15029 Q15029 326 341 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 1.4447E-46 219.43 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 66608000 0 8295000 58313000 6721 1335 7008 28688;28689;28690;28691;28692 24303;24304;24305;24306;24307 24303 5 0 3735400 12643000 IYAMHWGTDSR IQMRTRRTLRGHLAKIYAMHWGTDSRLLVS HLAKIYAMHWGTDSRLLVSASQDGKLIIWD K I Y S R L 1 1 0 1 0 0 0 1 1 1 0 0 1 0 0 1 1 1 1 0 0 0 11 0 1335.603 P62873 P62873 58 68 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 0.013257 90.696 By MS/MS 6 0 1 1 0 0 0 0 6722 1043 7009 28693 24308 24308 1 0 0 0 IYAPEAPYTSPDK DVRLLVACCLADIFRIYAPEAPYTSPDKLK FRIYAPEAPYTSPDKLKDIFMFITRQLKGL R I Y D K L 2 0 0 1 0 0 1 0 0 1 0 1 0 0 3 1 1 0 2 0 0 0 13 0 1450.698 Q9NTI5 Q9NTI5 90 102 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.015918 82.008 By MS/MS By MS/MS 1 0 2 1 1 55743000 0 3152000 52591000 6723 2053 7010 28694;28695 24309;24310 24310 1 0 1540600 11332000 IYDDDFFQNLDGVANALDNVDAR RVTSHQNRVGPDTERIYDDDFFQNLDGVAN NLDGVANALDNVDARMYMDRRCVYYRKPLL R I Y A R M 3 1 3 6 0 1 0 1 0 1 2 0 0 2 0 0 0 0 1 2 0 0 23 0 2599.1827 P22314 P22314 559 581 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 3 0.001962 50.531 By MS/MS 2 0 1 1 1586300 0 0 1586300 6724 630 7011 28696 24311 24311 1 0 0 358470 IYDLNKPEAEPK DSNYLLTGGQDKLLRIYDLNKPEAEPKEIS LLRIYDLNKPEAEPKEISGHTSGIKKALWC R I Y P K E 1 0 1 1 0 0 2 0 0 1 1 2 0 0 2 0 0 0 1 0 0 0 12 1 1415.7296 Q9Y3F4 Q9Y3F4 126 137 STRAP Serine-threonine kinase receptor-associated protein yes yes 3 0.019576 65.563 By MS/MS By matching 6 0 2 1 1 13600000 0 7146200 6454300 6725 2275 7012 28697;28698 24312 24312 1 0 2473800 965630 IYDPQEGAVVVLPADSQQR ANKELLKSLQATALRIYDPQEGAVVVLPAD QEGAVVVLPADSQQRLVQLVYFLPSLPADL R I Y Q R L 2 1 0 2 0 3 1 1 0 1 1 0 0 0 2 1 0 0 1 3 0 0 19 0 2084.0538 Q9NXF1 Q9NXF1 599 617 TEX10 Testis-expressed sequence 10 protein yes yes 2;3 7.4798E-09 122.12 By matching By MS/MS 2 0 3 1 2 10829000 1086000 0 9743500 6726 2089 7013 28699;28700;28701 24313;24314 24313 2 1308500 0 2201800 IYEAQPEISR RAKSTWLNNIKLLNKIYEAQPEISRAFQTR KLLNKIYEAQPEISRAFQTREFIPLPRLLA K I Y S R A 1 1 0 0 0 1 2 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 10 0 1204.6088 O60287 O60287 400 409 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.00095297 111.46 By MS/MS 1 0 1 1 3551700 0 3551700 0 6727 224 7014 28702 24315 24315 1 0 1736000 0 IYEDGDDDMKR TETDPSEGLMNVLKKIYEDGDDDMKRTINK VLKKIYEDGDDDMKRTINKAWVESREKQAK K I Y K R T 0 1 0 4 0 0 1 1 0 1 0 1 1 0 0 0 0 0 1 0 0 0 11 1 1355.5663 Q9HB71 Q9HB71 198 208 CACYBP Calcyclin-binding protein yes yes 3 0.024086 59.198 By MS/MS 6 0.816 1 1 1 3 5422300 0 0 5422300 6728 2006 7015 28703;28704;28705 24316 24316 1 0 0 889630 IYGLGSLALYEK AAKYARAERELKPARIYGLGSLALYEKADI PARIYGLGSLALYEKADIKGPEDKKKHLLI R I Y E K A 1 0 0 0 0 0 1 2 0 1 3 1 0 0 0 1 0 0 2 0 0 0 12 0 1325.7231 P36542 P36542 68 79 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2 0.0026276 108.47 By matching By MS/MS By MS/MS 6 0 3 1 1 1 46715000 1266800 22836000 22613000 6729 760 7016 28706;28707;28708 24317;24318 24317 2 1686800 7904900 3383100 IYGNQDTSVQLK FLKRLSNDNRGIAQRIYGNQDTSVQLKKFY AQRIYGNQDTSVQLKKFYNQVSTPLLRNVQ R I Y L K K 0 0 1 1 0 2 0 1 0 1 1 1 0 0 0 1 1 0 1 1 0 0 12 0 1364.6936 CON__Q9TRI1 CON__Q9TRI1 476 487 yes yes 2 0.021655 83.647 By matching By MS/MS 3 0.707 1 2 1 2 2 25211000 8761700 0 16449000 + 6730 99 7017 28709;28710;28711;28712 24319 24319 1 10374000 0 3104700 IYIDSNNNPER HEGCEEPATHNALAKIYIDSNNNPERFLRE ALAKIYIDSNNNPERFLRENPYYDSRVVGK K I Y E R F 0 1 3 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 11 0 1333.6262 Q00610 Q00610 882 892 CLTC Clathrin heavy chain 1 yes yes 2 2.1456E-26 196.88 By MS/MS By MS/MS 1 0 2 1 1 71951000 0 21041000 50910000 6731 1125 7018 28713;28714 24320;24321 24321 2 0 10284000 10969000 IYIPLPEEAAR PWVLDSAIRRRFEKRIYIPLPEEAARAQMF FEKRIYIPLPEEAARAQMFRLHLGSTPHNL R I Y A R A 2 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 0 11 0 1270.6921 Q9UN37 Q9UN37 289 299 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 2 6.9614E-06 113.22 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 4724900 0 1893500 2831400 6732 2201 7019 28715;28716;28717 24322;24323 24323 2 0 628380 394930 IYISNTFSPSK QEAIKKPLTQKRKLRIYISNTFSPSKAEGD RKLRIYISNTFSPSKAEGDSAGTAGTPGGT R I Y S K A 0 0 1 0 0 0 0 0 0 2 0 1 0 1 1 3 1 0 1 0 0 0 11 0 1255.6449 Q92925 Q92925 196 206 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 2 0.0015423 110.14 By MS/MS 4 0 1 1 12436000 0 12436000 0 6733 1732 7020 28718 24324 24324 1 0 4127000 0 IYIVMNYVEHDLK IVTVREIVVGSNMDKIYIVMNYVEHDLKSL DKIYIVMNYVEHDLKSLMETMKQPFLPGEV K I Y L K S 0 0 1 1 0 0 1 0 1 2 1 1 1 0 0 0 0 0 2 2 0 0 13 0 1635.8331 P21127;Q9UQ88 P21127 512 524 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 3 0.0095191 68.034 By matching By MS/MS 2 0 2 1 1 29595000 741540 0 28853000 6734 620 7021 28719;28720 24325 24325 1 893460 0 6520300 IYKPLLFMDLLDER DVIRRRTAHAFKISKIYKPLLFMDLLDERT KIYKPLLFMDLLDERTLVAVERPLDDIIAQ K I Y E R T 0 1 0 2 0 0 1 0 0 1 4 1 1 1 1 0 0 0 1 0 0 0 14 1 1764.9484 Q969X6 Q969X6 646 659 CIRH1A Cirhin yes yes 3 0.00077912 94.728 By MS/MS 2 0.816 1 1 1 3 7783500 0 0 7783500 6735 1746 7022 28721;28722;28723 24326;24327 24327 2 0 0 1575400 IYLDMLNVYK ACKAVGHPFVIQLGRIYLDMLNVYKCLSEN IQLGRIYLDMLNVYKCLSENISAAIQANGE R I Y Y K C 0 0 1 1 0 0 0 0 0 1 2 1 1 0 0 0 0 0 2 1 0 0 10 0 1270.6631 O14980 O14980 713 722 XPO1 Exportin-1 yes yes 2 0.006308 95.099 By matching By MS/MS 2 0 2 1 1 5307000 891080 0 4415900 6736 158 7023 28724;28725 24328 24328 1 1073600 0 997900 IYLILEYAPR PNILRLYNYFYDRRRIYLILEYAPRGELYK YDRRRIYLILEYAPRGELYKELQKSCTFDE R I Y P R G 1 1 0 0 0 0 1 0 0 2 2 0 0 0 1 0 0 0 2 0 0 0 10 0 1249.7071 Q96GD4 Q96GD4 150 159 AURKB Aurora kinase B yes yes 2 0.00035554 124.98 By MS/MS 6 0 1 1 2853200 0 0 2853200 6737 1790 7024 28726 24329 24329 1 0 0 426870 IYNDDKNTYIR IYIGSQDALIAHYPRIYNDDKNTYIRYELD HYPRIYNDDKNTYIRYELDYIL________ R I Y I R Y 0 1 2 2 0 0 0 0 0 2 0 1 0 0 0 0 1 0 2 0 0 0 11 1 1413.6888 O75533 O75533 1287 1297 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 2.3209E-22 160.53 By MS/MS By MS/MS 1.57 0.495 3 4 3 4 48994000 0 16486000 32509000 6738 270 7025 28727;28728;28729;28730;28731;28732;28733 24330;24331;24332;24333;24334;24335 24331 6 0 7563700 7163500 IYNISGNGSPLADSK VFKTPGLRTPAAGERIYNISGNGSPLADSK IYNISGNGSPLADSKEIFLTVPVGGGESLR R I Y S K E 1 0 2 1 0 0 0 2 0 2 1 1 0 0 1 3 0 0 1 0 0 0 15 0 1534.7627 Q53HL2 Q53HL2 211 225 CDCA8 Borealin yes yes 2 0.00040283 115.33 By MS/MS 6 0 1 1 3162600 0 3162600 0 6739 1429 7026 28734 24336 24336 1 0 1094800 0 IYNSIYIGSQDALIAHYPR GLFHPARKVRDVYWKIYNSIYIGSQDALIA IYIGSQDALIAHYPRIYNDDKNTYIRYELD K I Y P R I 2 1 1 1 0 1 0 1 1 4 1 0 0 0 1 2 0 0 3 0 0 0 19 0 2193.1219 O75533 O75533 1268 1286 SF3B1 Splicing factor 3B subunit 1 yes yes 3 1.4553E-09 136.34 By MS/MS 2 0 1 1 26606000 0 0 26606000 6740 270 7027 28735 24337 24337 1 0 0 6012400 IYPEEMIQTGISAIDGMNSIAR DFLDIMGQPINPQCRIYPEEMIQTGISAID QTGISAIDGMNSIARGQKIPIFSAAGLPHN R I Y A R G 2 1 1 1 0 1 2 2 0 5 0 0 2 0 1 2 1 0 1 0 0 0 22 0 2408.1716 P21281 P21281 164 185 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 3 6.0773E-05 75.064 By MS/MS 4 0 1 1 5024800 0 0 5024800 6741 621 7028 28736 24338 24338 1 0 0 820710 IYPSREEYEAHQDR RSLRPDPNFDALISKIYPSREEYEAHQDRV KIYPSREEYEAHQDRVLIRLSRLHNQQALS K I Y D R V 1 2 0 1 0 1 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 0 14 1 1791.8176 Q06587 Q06587 110 123 RING1 E3 ubiquitin-protein ligase RING1 yes yes 3;4 0.0022101 81.619 By MS/MS 4.6 1.36 1 2 1 1 5 43671000 0 0 43671000 6742 1171 7029 28737;28738;28739;28740;28741 24339;24340 24340 2 0 0 6538300 IYPTFLHLHGK RELQCLTPRGRYDIRIYPTFLHLHGKTFDY YDIRIYPTFLHLHGKTFDYKIPYTTVLRLF R I Y G K T 0 0 0 0 0 0 0 1 2 1 2 1 0 1 1 0 1 0 1 0 0 0 11 0 1324.7292 Q08945 Q08945 218 228 SSRP1 FACT complex subunit SSRP1 yes yes 2;3 0.0047956 81.594 By matching By MS/MS By MS/MS 3.83 2.11 1 2 4 2 2 1 1 5 6 178160000 3178400 43445000 131540000 6743 1186 7030 28742;28743;28744;28745;28746;28747;28748;28749;28750;28751;28752;28753 24341;24342;24343;24344;24345;24346;24347;24348;24349;24350;24351 24343 11 3667200 20518000 25526000 IYPVGYFTK SDSYLVPGMTYSKGKIYPVGYFTKENPVKG TYSKGKIYPVGYFTKENPVKGSPGVPSFAA K I Y T K E 0 0 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 0 2 1 0 0 9 0 1086.575 Q15517 Q15517 318 326 CDSN Corneodesmosin yes yes 2 0.0071701 93.162 By MS/MS 1 0 1 1 15228000 15228000 0 0 6744 1372 7031 28754 24352 24352 1 15228000 0 0 IYQDAYR RIAQRWRELPDSKKKIYQDAYRAEWQVYKE ELPDSKKKIYQDAYRAEWQVYKEEISRFKE K I Y Y R A 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 7 0 927.44503 Q00059 Q00059 98 104 TFAM Transcription factor A, mitochondrial yes yes 2 0.0023039 134.12 By MS/MS By MS/MS 7 0 2 1 1 108480000 0 16834000 91642000 6745 1120 7032 28755;28756 24353;24354 24353 2 0 9666000 16261000 IYQNIQDGSLDLNAAESGVQHKPSAPQGGR TGENVEDAFLEAAKKIYQNIQDGSLDLNAA ESGVQHKPSAPQGGRLTSEPQPQREGCGC_ K I Y G R L 3 1 2 2 0 4 1 4 1 2 2 1 0 0 2 3 0 0 1 1 0 0 30 1 3149.549 P61106 P61106 172 201 RAB14 Ras-related protein Rab-14 yes yes 4 1.8784E-41 130.46 By matching By MS/MS 7 0 2 1 1 28631000 0 6242800 22388000 6746 979 7033 28757;28758 24355 24355 1 0 3584600 3972700 IYQVLDFR WIRFGYDPRKNPDAKIYQVLDFRIRCGMKH RKNPDAKIYQVLDFRIRCGMKHGYAPSDLP K I Y F R I 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 Q9Y5Q8 Q9Y5Q8 315 322 GTF3C5 General transcription factor 3C polypeptide 5 yes yes 2 7.9973E-06 154.35 By MS/MS 4 0 1 1 2709600 0 0 2709600 6747 2300 7034 28759 24356 24356 1 0 0 442570 IYQYVINK LDIRLTKDNNLTTGKIYQYVINKERKGDYL NNLTTGKIYQYVINKERKGDYLGKTVQVVP K I Y N K E 0 0 1 0 0 1 0 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 0 1039.5702 P17812 P17812 93 100 CTPS1 CTP synthase 1 yes yes 2 0.024936 80.462 By MS/MS 3 0 1 1 4601300 0 4601300 0 6748 587 7035 28760 24357 24357 1 0 1961500 0 IYSMSLR IFSNSKAYTPSKRSRIYSMSLRLSAFFEEH YTPSKRSRIYSMSLRLSAFFEEHISSVLSD R I Y L R L 0 1 0 0 0 0 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 0 7 0 868.44767 Q8WWQ0 Q8WWQ0 1403 1409 PHIP PH-interacting protein yes yes 2 0.028226 94.163 By MS/MS 1 0 1 1 11539000 0 0 11539000 6749 1690 7036 28761 24358 24358 1 0 0 2486300 IYVAELIQQLQQQALSEPAVVQK KQRLLEEKDPVPLFKIYVAELIQQLQQQAL QLQQQALSEPAVVQKRASGQ__________ K I Y Q K R 3 0 0 0 0 6 2 0 0 2 3 1 0 0 1 1 0 0 1 3 0 0 23 0 2595.4272 Q13084 Q13084 229 251 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 3 0.02402 32.702 By MS/MS 6 0 1 1 434030 0 434030 0 6750 1218 7037 28762 24359 24359 1 0 150250 0 IYVDDGLISLQVK LDYKNICKVVEVGSKIYVDDGLISLQVKQK SKIYVDDGLISLQVKQKGADFLVTEVENGG K I Y V K Q 0 0 0 2 0 1 0 1 0 2 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1461.8079 P14618 P14618 174 186 PKM Pyruvate kinase PKM yes yes 2 0.048906 69.01 By MS/MS 3.5 0.5 1 1 2 16145000 0 0 16145000 6751 559 7038 28763;28764 24360 24360 1 0 0 2749100 IYVGNLPPDIR GGGVIRGPAGNNDCRIYVGNLPPDIRTKDI NDCRIYVGNLPPDIRTKDIEDVFYKYGAIR R I Y I R T 0 1 1 1 0 0 0 1 0 2 1 0 0 0 2 0 0 0 1 1 0 0 11 0 1255.6925 Q07955 Q07955 18 28 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 1.4117E-09 162.49 By MS/MS By MS/MS 7.25 1.92 1 4 1 2 3 5 139020000 0 58624000 80394000 6752 1179 7039 28765;28766;28767;28768;28769;28770;28771;28772 24361;24362;24363;24364;24365;24366;24367;24368;24369;24370;24371;24372;24373;24374;24375;24376;24377;24378;24379;24380;24381 24380 20 0 38839000 17345000 IYVGNLPTDVR MSGWADERGGEGDGRIYVGNLPTDVREKDL GDGRIYVGNLPTDVREKDLEDLFYKYGRIR R I Y V R E 0 1 1 1 0 0 0 1 0 1 1 0 0 0 1 0 1 0 1 2 0 0 11 0 1245.6717 Q13242 Q13242 16 26 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.00027084 134.25 By matching By MS/MS By MS/MS 7.12 2.03 1 1 1 2 1 2 1 5 2 520260000 5568000 217340000 297350000 6753 1232 7040 28773;28774;28775;28776;28777;28778;28779;28780 24382;24383;24384 24384 3 4344000 150520000 67431000 IYVGNLPTDVREK MSGWADERGGEGDGRIYVGNLPTDVREKDL GRIYVGNLPTDVREKDLEDLFYKYGRIREI R I Y E K D 0 1 1 1 0 0 1 1 0 1 1 1 0 0 1 0 1 0 1 2 0 0 13 1 1502.8093 Q13242 Q13242 16 28 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 3 0.011617 68.463 By MS/MS 7 0 1 1 3049400 0 3049400 0 6754 1232 7041 28781 24385 24385 1 0 1751000 0 IYVLLRR TQTYQPYNKDWIKEKIYVLLRRQAQQAGK_ NKDWIKEKIYVLLRRQAQQAGK________ K I Y R R Q 0 2 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 7 1 931.59672 P84090 P84090 91 97 ERH Enhancer of rudimentary homolog yes yes 2 0.023358 114.6 By MS/MS 10 0 1 1 4188900 0 4188900 0 6755 1110 7042 28782 24386 24386 1 0 21193000 0 KAADDTWEPFASGK VRGSPAINVAVHVFRKAADDTWEPFASGKT RKAADDTWEPFASGKTSESGELHGLTTEEE R K A G K T 3 0 0 2 0 0 1 1 0 0 0 2 0 1 1 1 1 1 0 0 0 0 14 1 1521.71 P02766 P02766 55 68 TTR Transthyretin yes yes 2 1.5358E-25 205.96 By MS/MS 9 0 1 1 7082500 7082500 0 0 6756 396 7043 28783 24387 24387 1 3975400 0 0 KAALEAQNALHNMK PPQSKGCCFVTFYTRKAALEAQNALHNMKV RKAALEAQNALHNMKVLPGMHHPIQMKPAD R K A M K V 4 0 2 0 0 1 1 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 14 1 1537.8035 Q92879 Q92879 70 83 CELF1 CUGBP Elav-like family member 1 yes yes 2;3 8.7047E-05 145.52 By MS/MS 4 0 2 2 16104000 0 16104000 0 6757 1727 7044 28784;28785 24388;24389 24388 2 0 5344200 0 KAASITSEVFNK YTIAVKEDGELNLMKKAASITSEVFNKFFK LMKKAASITSEVFNKFFKERVMEIVDADEK K K A N K F 2 0 1 0 0 0 1 0 0 1 0 2 0 1 0 2 1 0 0 1 0 0 12 1 1293.6929 Q9Y5B9 Q9Y5B9 185 196 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00065747 128.33 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 21781000 0 0 21781000 6758 2296 7045 28786;28787;28788 24390;24391;24392 24391 3 0 0 4802800 KACQIFVR GSFGGAGGHAPGVARKACQIFVRNLPFDFT HAPGVARKACQIFVRNLPFDFTWKMLKDKF R K A V R N 1 1 0 0 1 1 0 0 0 1 0 1 0 1 0 0 0 0 0 1 0 0 8 1 1020.5539 P52272 P52272 651 658 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00014387 148.21 By matching By MS/MS 3 0 2 1 1 79388000 62326000 0 17062000 6759 902 7046 28789;28790 24393 24393 1 71910000 0 3309300 KADEVLEILK RQLSRFYDDAIVSQKKADEVLEILKTASDD IVSQKKADEVLEILKTASDDRECENQLVLL K K A L K T 1 0 0 1 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1156.6703 O75643 O75643 285 294 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 3.4629E-38 206.73 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 68342000 0 13564000 54778000 6760 277 7047 28791;28792;28793;28794 24394;24395 24395 2 0 6630000 11751000 KADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE YAHVVLRKADIDLTKRAGELTEDEVERVIT R K A T K R 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 8 1 902.5073 P62269 P62269 47 54 RPS18 40S ribosomal protein S18 yes yes 2 8.1401E-06 158.37 By matching By MS/MS 7.6 1.36 1 2 1 1 2 3 27712000 0 5712400 22000000 6761 1014 7048 28795;28796;28797;28798;28799 24396 24396 1 0 2782600 8522800 KADTEEEFLAFR DTPTSSKPQPKRSLRKADTEEEFLAFRKQT SLRKADTEEEFLAFRKQTPSAGKAMHTPKP R K A F R K 2 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 12 1 1454.7042 P46013 P46013 1761 1772 MKI67 Antigen KI-67 yes yes 2 0.031628 86.014 By MS/MS 2 0.816 1 1 1 3 36207000 0 0 36207000 6762 821 7049 28800;28801;28802 24397 24397 1 0 0 7243800 KADTTTPTTSAITASR VPPTPPVVKKKGVKRKADTTTPTTSAITAS ADTTTPTTSAITASRSESPPPLSDPKQAKV R K A S R S 3 1 0 1 0 0 0 0 0 1 0 1 0 0 1 2 6 0 0 0 0 0 16 1 1620.8319 Q15059 Q15059 245 260 BRD3 Bromodomain-containing protein 3 yes yes 2;3 7.5665E-05 135.58 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 23908000 0 3619600 20288000 6763 1342 7050 28803;28804;28805;28806;28807;28808 24398;24399;24400 24400 3 0 1630000 4414600 KADVDAIHEYLLLK CLQKTPPPVLIFAEKKADVDAIHEYLLLKG KKADVDAIHEYLLLKGVEAVAIHGGKDQEE K K A L K G 2 0 0 2 0 0 1 0 1 1 3 2 0 0 0 0 0 0 1 1 0 0 14 1 1626.8981 Q9UJV9 Q9UJV9 442 455 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.04672 42.218 By MS/MS 2.5 0.5 1 1 2 19804000 0 0 19804000 6764 2171 7051 28809;28810 24401 24401 1 0 0 3892300 KADVEEEFLALR DTPTSTKQWPKRSLRKADVEEEFLALRKLT SLRKADVEEEFLALRKLTPSAGKAMLTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 12 1 1418.7405 P46013 P46013 1153 1164 MKI67 Antigen KI-67 yes no 2;3 0.0013756 120.55 By matching By MS/MS 1.5 0.5 2 2 1 3 28180000 0 1091200 27089000 6765 821 7052 28811;28812;28813;28814 24402;24403;24404 24402 3 0 533370 5996800 KADVEEESLALR GTPTIFKPQSKRSLRKADVEEESLALRKRT SLRKADVEEESLALRKRTPSVGKAMDTPKP R K A L R K 2 1 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 12 1 1358.7042 P46013 P46013 2245 2256 MKI67 Antigen KI-67 yes yes 2 0.00060997 128.88 By MS/MS 1 0 1 1 9182700 0 0 9182700 6766 821 7053 28815 24405 24405 1 0 0 1978600 KAEAGAGSATEFQFR RDTYRRSAVPPGADKKAEAGAGSATEFQFR KAEAGAGSATEFQFRGGFGRGRGQPPQ___ K K A F R G 4 1 0 0 0 1 2 2 0 0 0 1 0 2 0 1 1 0 0 0 0 0 15 1 1568.7583 P46783;Q9NQ39 P46783 139 153 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2;3 5.4638E-58 228.62 By MS/MS By MS/MS 7.25 0.661 1 4 3 4 4 354010000 0 205480000 148530000 6767 833 7054 28816;28817;28818;28819;28820;28821;28822;28823 24406;24407;24408;24409;24410;24411;24412;24413 24413 8 0 115600000 25284000 KAEAVVNTVDISER RKKRRMLKRLEQTRKKAEAVVNTVDISERE KKAEAVVNTVDISEREKVAQLRSLYKKAGL K K A E R E 2 1 1 1 0 0 2 0 0 1 0 1 0 0 0 1 1 0 0 3 0 0 14 1 1529.8049 Q8IY81 Q8IY81 763 776 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 0.026539 58.723 By MS/MS 4 0 1 1 4749400 0 0 4749400 6768 1590 7055 28824 24414 24414 0 0 0 775740 KAEEELGELEAK YDTRKSRLELQKDVRKAEEELGELEAKLNE DVRKAEEELGELEAKLNENLRRNIERINNE R K A A K L 2 0 0 0 0 0 5 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 12 1 1344.6773 Q9UQE7 Q9UQE7 684 695 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.5742E-88 250.48 By matching By MS/MS By MS/MS 1.56 0.497 4 5 1 4 4 144350000 8738500 21828000 113780000 6769 2222 7056 28825;28826;28827;28828;28829;28830;28831;28832;28833 24415;24416;24417;24418;24419;24420;24421 24421 7 10529000 10001000 25216000 KAEFEEQNVR SAISDHLKSKTHTKRKAEFEEQNVRKKQRP THTKRKAEFEEQNVRKKQRPLTASLQCNST R K A V R K 1 1 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 10 1 1248.6099 Q9UFW8 Q9UFW8 71 80 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 3 0.065494 39.266 By matching By MS/MS 6.67 0.471 1 2 2 1 7813400 0 3363600 4449800 6770 2141 7057 28834;28835;28836 24422 24422 1 0 1530100 789590 KAEIMESIK GDARIDRQESSRQQRKAEIMESIKRLYPGS SSRQQRKAEIMESIKRLYPGSVYGRLIDLC R K A I K R 1 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 0 0 0 0 0 0 9 1 1047.5634 Q14683 Q14683 500 508 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 2.9488E-59 189.18 By MS/MS 1.5 0.5 1 1 2 11907000 0 0 11907000 6771 1312 7058 28837;28838 24423;24424 24424 2 0 0 2565600 KAEIMESIKR GDARIDRQESSRQQRKAEIMESIKRLYPGS SRQQRKAEIMESIKRLYPGSVYGRLIDLCQ R K A K R L 1 1 0 0 0 0 2 0 0 2 0 2 1 0 0 1 0 0 0 0 0 0 10 2 1203.6645 Q14683 Q14683 500 509 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00014212 143.03 By MS/MS By MS/MS 1.5 0.5 4 4 3 5 74752000 0 11431000 63321000 6772 1312 7059 28839;28840;28841;28842;28843;28844;28845;28846 24425;24426;24427;24428;24429 24427 5 0 5314300 13854000 KAEPSEVDMNSPK EEEETVFPKAKQVKKKAEPSEVDMNSPKSK KKKAEPSEVDMNSPKSKKAKKKEEPSQNDI K K A P K S 1 0 1 1 0 0 2 0 0 0 0 2 1 0 2 2 0 0 0 1 0 0 13 1 1430.6711 Q9NR30 Q9NR30 61 73 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00025819 89.548 By MS/MS 2 0 1 1 0 0 0 0 6773 2038 7060 28847 24430 24430 1 0 0 0 KAEQMFGEMEVWNAISER FLENHEKMTSTTRYKKAEQMFGEMEVWNAI QMFGEMEVWNAISERDRLEIYEDVLFFLSK K K A E R D 2 1 1 0 0 1 4 1 0 1 0 1 2 1 0 1 0 1 0 1 0 0 18 1 2153.9874 O75400 O75400 485 502 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 3 3.5607E-05 98.196 By MS/MS 1.5 0.5 1 1 2 7211900 0 0 7211900 6774 258 7061 28848;28849 24431 24431 1 0 0 1605600 KAEVEGKDLPEHAVLK VVCPKDEDYKQRTQKKAEVEGKDLPEHAVL AEVEGKDLPEHAVLKMKGNFTLPEVAECFD K K A L K M 2 0 0 1 0 0 3 1 1 0 2 3 0 0 1 0 0 0 0 2 0 0 16 2 1761.9625 Q00839 Q00839 620 635 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3;4 2.3414E-05 107.69 By MS/MS 1.5 0.5 2 2 4 72546000 0 72546000 0 6775 1127 7062 28850;28851;28852;28853 24432;24433 24433 2 0 32735000 0 KAFLNAIMR VGGNIEVLGFNARQRKAFLNAIMRYGMPPQ FNARQRKAFLNAIMRYGMPPQDAFTTQWLV R K A M R Y 2 1 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 9 1 1062.6008 Q14839;Q8TDI0 Q14839 1422 1430 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.0012034 130 By MS/MS By MS/MS 1 0 2 1 1 27110000 0 7351900 19758000 6776 1321;1662 7063 28854;28855 24434;24435 24434 2 0 3593500 4257100 KAFSAVDTDGNGTINAQELGAALK ______________________________ GNGTINAQELGAALKATGKNLSEAQLRKLI K K A L K A 5 0 2 2 0 1 1 3 0 1 2 2 0 1 0 1 2 0 0 1 0 0 24 1 2390.2078 Q9NZT1 Q9NZT1 15 38 CALML5 Calmodulin-like protein 5 yes yes 3 1.6947E-21 138.49 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 86165000 86165000 0 0 6777 2107 7064 28856;28857;28858;28859;28860;28861;28862;28863;28864;28865 24436;24437;24438;24439;24440 24438 5 97394000 0 0 KAGNFYVPAEPK RQMYRTEIRMARMARKAGNFYVPAEPKLAF MARKAGNFYVPAEPKLAFVIRIRGINGVSP R K A P K L 2 0 1 0 0 0 1 1 0 0 0 2 0 1 2 0 0 0 1 1 0 0 12 1 1319.6874 P18124 P18124 77 88 RPL7 60S ribosomal protein L7 yes yes 2;3 0.00070017 127.83 By MS/MS By MS/MS 6.4 0.49 3 2 3 2 220450000 0 109900000 110550000 6778 594 7065 28866;28867;28868;28869;28870 24441;24442;24443 24441 3 0 38510000 16654000 KAGTQIENIDEDFRDGLK QQRKTFTAWCNSHLRKAGTQIENIDEDFRD TQIENIDEDFRDGLKLMLLLEVISGERLPK R K A L K L 1 1 1 3 0 1 2 2 0 2 1 2 0 1 0 0 1 0 0 0 0 0 18 2 2048.0174 O43707 O43707 66 83 ACTN4 Alpha-actinin-4 yes yes 4 0.020564 45.267 By MS/MS 2 0 1 1 5999600 0 0 5999600 6779 210 7066 28871 24444 24444 1 0 0 1355800 KAHLMEIQVNGGTVAEK VIAHTQMRLLPLRQKKAHLMEIQVNGGTVA HLMEIQVNGGTVAEKLDWARERLEQQVPVN K K A E K L 2 0 1 0 0 1 2 2 1 1 1 2 1 0 0 0 1 0 0 2 0 0 17 1 1823.9564 P39023 P39023 177 193 RPL3 60S ribosomal protein L3 yes yes 3 0.00094298 77.478 By MS/MS 5 0 2 2 22913000 0 22913000 0 6780 778 7067;7068 28872;28873 24445;24446 24445 387 2 0 5906200 0 KAHLTNQYMQR SKPLYVALAQRKEERKAHLTNQYMQRVAGM KEERKAHLTNQYMQRVAGMRALPANAILNQ R K A Q R V 1 1 1 0 0 2 0 0 1 0 1 1 1 0 0 0 1 0 1 0 0 0 11 1 1388.6983 Q13310 Q13310 375 385 PABPC4 Polyadenylate-binding protein 4 yes yes 3 1.6445E-14 181.53 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 31618000 0 21963000 9655400 6781 1237 7069 28874;28875;28876;28877 24447;24448;24449 24447 3 0 9176700 1872700 KAIIIFVPVPQLK LNITAAKEIEVGGGRKAIIIFVPVPQLKSF GRKAIIIFVPVPQLKSFQKIQVRLVRELEK R K A L K S 1 0 0 0 0 1 0 0 0 3 1 2 0 1 2 0 0 0 0 2 0 0 13 1 1464.9432 P62081 P62081 58 70 RPS7 40S ribosomal protein S7 yes yes 2;3 0.0068614 103.42 By MS/MS By MS/MS 7 0 4 2 2 21137000 0 1761800 19375000 6782 1005 7070 28878;28879;28880;28881 24450;24451 24451 2 0 1011600 3438000 KALAAAGYDVEK AASKERSGVSLAALKKALAAAGYDVEKNNS ALKKALAAAGYDVEKNNSRIKLGLKSLVSK K K A E K N 4 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1234.6558 P10412;Q02539;P22492;P16402;P16403 P16403 64 75 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.3;Histone H1.2 no no 2;3 2.2588E-08 172.92 By MS/MS By MS/MS 4.65 2.42 4 3 2 2 4 4 4 2 1 10 16 2749800000 0 186190000 2563600000 6783 509;578;577 7071 28882;28883;28884;28885;28886;28887;28888;28889;28890;28891;28892;28893;28894;28895;28896;28897;28898;28899;28900;28901;28902;28903;28904;28905;28906;28907 24452;24453;24454;24455;24456;24457;24458;24459;24460;24461;24462;24463;24464;24465;24466;24467;24468;24469;24470;24471;24472;24473 24455 22 0 69760000 403170000 KALAAAGYDVEKNNSR AASKERSGVSLAALKKALAAAGYDVEKNNS ALAAAGYDVEKNNSRIKLGLKSLVSKGTLV K K A S R I 4 1 2 1 0 0 1 1 0 0 1 2 0 0 0 1 0 0 1 1 0 0 16 2 1705.8747 P10412;Q02539;P22492;P16402;P16403 P16403 64 79 HIST1H1E;HIST1H1A;HIST1H1T;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1t;Histone H1.3;Histone H1.2 no no 2;3;4 2.7244E-06 155.63 By MS/MS By matching 6.17 0.373 5 1 4 2 57657000 0 50381000 7276400 6784 509;578;577 7072 28908;28909;28910;28911;28912;28913 24474;24475;24476;24477 24475 4 0 17926000 1088600 KALEHVPNSVR AELETDIRAKKRVLRKALEHVPNSVRLWKA RVLRKALEHVPNSVRLWKAAVELEEPEDAR R K A V R L 1 1 1 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 0 2 0 0 11 1 1248.6939 O94906 O94906 395 405 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.070295 35.594 By MS/MS 1.5 0.5 1 1 2 1841500 0 1841500 0 6785 305 7073 28914;28915 24478 24478 1 0 842180 0 KALVDILSEVSK QALAQYQNHLQEQPRKALVDILSEVSKATL QPRKALVDILSEVSKATLQEILPEVLKADL R K A S K A 1 0 0 1 0 0 1 0 0 1 2 2 0 0 0 2 0 0 0 2 0 0 12 1 1300.7602 Q9BQG0 Q9BQG0 179 190 MYBBP1A Myb-binding protein 1A yes yes 2 0.011523 99.732 By matching By MS/MS 1.5 0.5 1 1 1 1 8339300 0 1265000 7074300 6786 1885 7074 28916;28917 24479 24479 1 0 618320 1598700 KANLQIDQINTDLNLER EEEQGNTELINDRLKKANLQIDQINTDLNL NLQIDQINTDLNLERSHAQKNENARQQLER K K A E R S 1 1 3 2 0 2 1 0 0 2 3 1 0 0 0 0 1 0 0 0 0 0 17 1 1997.0542 P35579 P35579 1754 1770 MYH9 Myosin-9 yes yes 2;3 4.8646E-27 201.06 By matching By MS/MS By MS/MS 1 0 4 1 2 1 132450000 2414000 119010000 11030000 6787 752 7075 28918;28919;28920;28921 24480;24481;24482;24483 24482 4 2414000 58170000 2376600 KANYAVDAYFR KIAFTEWIEPPKRERKANYAVDAYFREALR KRERKANYAVDAYFREALRVSEPKAPKAPR R K A F R E 3 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 2 1 0 0 11 1 1316.6513 O60264;P28370 O60264 739 749 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2;3 2.875E-06 153.1 By MS/MS By MS/MS 1.57 0.495 3 4 4 3 73699000 0 19488000 54211000 6788 223;693 7076 28922;28923;28924;28925;28926;28927;28928 24484;24485;24486;24487;24488 24488 5 0 8929700 12093000 KAPDFVFYAPR ISFNDKKFVIKPIDKKAPDFVFYAPRLRIN PIDKKAPDFVFYAPRLRINKRILALCMGNH K K A P R L 2 1 0 1 0 0 0 0 0 0 0 1 0 2 2 0 0 0 1 1 0 0 11 1 1309.6819 P15311;P26038;P35241 P26038 263 273 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2;3 0.0029772 85.821 By MS/MS By MS/MS 3.4 0.49 3 2 3 2 26778000 0 15938000 10841000 6789 664;569;742 7077 28929;28930;28931;28932;28933 24489;24490;24491 24490 3 0 6629300 2081600 KAPPDGWELIEPTLDELDQK ______________________________ GWELIEPTLDELDQKMREAETEPHEGKRKV R K A Q K M 1 0 0 3 0 1 3 1 0 1 3 2 0 0 3 0 1 1 0 0 0 0 20 1 2293.1478 P41223 P41223 9 28 BUD31 Protein BUD31 homolog yes yes 3 1.6111E-05 78.674 By matching By MS/MS 7 0.816 1 1 1 1 2 16406000 0 1216700 15190000 6790 793 7078 28934;28935;28936 24492 24492 1 0 421170 2420900 KAPQLTSPELMALTR GEYYLQNAFLVAYTKKAPQLTSPELMALTR KAPQLTSPELMALTRKMANAGAICCHLSED K K A T R K 2 1 0 0 0 1 1 0 0 0 3 1 1 0 2 1 2 0 0 0 0 0 15 1 1654.9076 CON__Q3SZ57 CON__Q3SZ57 439 453 yes yes 3 0.029032 46.156 By MS/MS 10 0 1 1 1473100 0 1473100 0 + 6791 83 7079 28937 24493 24493 1 0 7452900 0 KAQDALPFFMMHLGYEK HLYSCLEDRNGDVRKKAQDALPFFMMHLGY QDALPFFMMHLGYEKMAKATGKLKPTSKDQ K K A E K M 2 0 0 1 0 1 1 1 1 0 2 2 2 2 1 0 0 0 1 0 0 0 17 1 2024.9852 Q14008 Q14008 1037 1053 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.00045393 83.849 By MS/MS 1.5 0.5 1 1 2 14257000 0 0 14257000 6792 1279 7080 28938;28939 24494;24495 24494 2 0 0 3111300 KAQDEGLLSDVVPFK LEQDEYALRSHSLAKKAQDEGLLSDVVPFK KAQDEGLLSDVVPFKVPGKDTVTKDNGIRP K K A F K V 1 0 0 2 0 1 1 1 0 0 2 2 0 1 1 1 0 0 0 2 0 0 15 1 1644.8723 P55084 P55084 254 268 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 3 0.035254 43.861 By MS/MS 4 0.816 1 1 1 3 8107100 0 0 8107100 6793 938 7081 28940;28941;28942 24496 24496 1 0 0 1331600 KAQIAIDIK HNDPNLETVYTLCEKKAQIAIDIKSAKREL YTLCEKKAQIAIDIKSAKRELKKARTVLQM K K A I K S 2 0 0 1 0 1 0 0 0 3 0 2 0 0 0 0 0 0 0 0 0 0 9 1 998.61243 P42285 P42285 825 833 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.00099953 126.82 By MS/MS 2 0 1 1 12867000 0 0 12867000 6794 800 7082 28943 24497 24497 1 0 0 2907600 KAQQELEEQTR EELMERLKQIEEQTKKAQQELEEQTRRALE EQTKKAQQELEEQTRRALELEQERKRAQSE K K A T R R 1 1 0 0 0 3 3 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1358.679 P26038 P26038 360 370 MSN Moesin yes yes 3 0.0050273 79.23 By MS/MS 3 0 1 1 1413800 0 1413800 0 6795 664 7083 28944 24498 24498 1 0 602700 0 KAQQELEEQTRR EELMERLKQIEEQTKKAQQELEEQTRRALE QTKKAQQELEEQTRRALELEQERKRAQSEA K K A R R A 1 2 0 0 0 3 3 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 12 2 1514.7801 P26038 P26038 360 371 MSN Moesin yes yes 3 3.3895E-06 106.49 By matching By MS/MS By MS/MS 2.5 0.5 2 2 1 2 1 11920000 4674200 7245500 0 6796 664 7084 28945;28946;28947;28948 24499;24500 24500 2 5631800 3105200 0 KASAEGPLLGPEAAPSGEGAGSK RKVPEVTEKKNKKLKKASAEGPLLGPEAAP LGPEAAPSGEGAGSKGEAVLRPGLDAEPEL K K A S K G 5 0 0 0 0 0 3 5 0 0 2 2 0 0 3 3 0 0 0 0 0 0 23 1 2080.0437 Q9BRJ6 Q9BRJ6 21 43 C7orf50 Uncharacterized protein C7orf50 yes yes 3 0.0016345 51.966 By MS/MS 7 0 1 1 6756700 0 0 6756700 6797 1889 7085 28949 24501 24501 1 0 0 1198900 KASGPPVSELITK PVKKKAAKKAGGTPRKASGPPVSELITKAV PRKASGPPVSELITKAVAASKERSGVSLAA R K A T K A 1 0 0 0 0 0 1 1 0 1 1 2 0 0 2 2 1 0 0 1 0 0 13 1 1325.7555 P10412;P16402;P16403 P16403 34 46 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2;3 2.8514E-57 229.56 By MS/MS By MS/MS 5.28 2.7 4 4 4 4 4 7 4 4 1 4 20 20 12322000000 0 3014100000 9307800000 6798 509;578;577 7086 28950;28951;28952;28953;28954;28955;28956;28957;28958;28959;28960;28961;28962;28963;28964;28965;28966;28967;28968;28969;28970;28971;28972;28973;28974;28975;28976;28977;28978;28979;28980;28981;28982;28983;28984;28985;28986;28987;28988;28989 24502;24503;24504;24505;24506;24507;24508;24509;24510;24511;24512;24513;24514;24515;24516;24517;24518;24519;24520;24521;24522;24523;24524;24525;24526;24527;24528;24529;24530;24531;24532;24533;24534;24535;24536;24537;24538;24539;24540;24541;24542;24543;24544;24545;24546;24547;24548;24549;24550;24551;24552;24553;24554;24555;24556;24557;24558;24559;24560;24561;24562;24563;24564;24565;24566;24567;24568;24569;24570;24571;24572;24573;24574;24575;24576;24577;24578;24579 24523 78 0 1230400000 1525600000 KASGPPVSELITKAVAASK PVKKKAAKKAGGTPRKASGPPVSELITKAV PPVSELITKAVAASKERSGVSLAALKKALA R K A S K E 4 0 0 0 0 0 1 1 0 1 1 3 0 0 2 3 1 0 0 2 0 0 19 2 1853.0622 P10412;P16402;P16403 P16403 34 52 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3 0.0010709 68.23 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 31654000 0 12158000 19496000 6799 509;578;577 7087 28990;28991;28992 24580;24581;24582 24580 3 0 4208600 2996200 KASGSGGGSAALGPSGFGPSGGSGTK KGPRAPRPPQPKKSKKASGSGGGSAALGPS LGPSGFGPSGGSGTKLPKKATKTAPPALPT K K A T K L 3 0 0 0 0 0 0 10 0 0 1 2 0 1 2 6 1 0 0 0 0 0 26 1 2135.0243 P25440 P25440 589 614 BRD2 Bromodomain-containing protein 2 yes yes 3 5.5923E-06 70.488 By MS/MS 2 0 1 1 5311200 0 0 5311200 6800 658 7088 28993 24583 24583 1 0 0 1200200 KATDAEADVASLNR EALKDAQEKLELAEKKATDAEADVASLNRR KKATDAEADVASLNRRIQLVEEELDRAQER K K A N R R 4 1 1 2 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 14 1 1459.7267 P09493;CON__Q3SX28;P07951 P09493 77 90 TPM1;TPM2 Tropomyosin alpha-1 chain;Tropomyosin beta chain yes no 2 8.2375E-17 186.55 By MS/MS 6 0 1 1 10217000 0 10217000 0 + 6801 485 7089 28994 24584 24584 1 0 3536800 0 KATDAEADVASLNRR EALKDAQEKLELAEKKATDAEADVASLNRR KATDAEADVASLNRRIQLVEEELDRAQERL K K A R R I 4 2 1 2 0 0 1 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 15 2 1615.8278 P09493;CON__Q3SX28;P07951 P09493 77 91 TPM1;TPM2 Tropomyosin alpha-1 chain;Tropomyosin beta chain yes no 3 0.00020295 102.64 By MS/MS 6 0 1 1 26371000 0 26371000 0 + 6802 485 7090 28995 24585 24585 1 0 9128900 0 KAVQGGGATPVVGAVQGPVPGMPPMTQAPR REKRKPKSQETPATKKAVQGGGATPVVGAV QGPVPGMPPMTQAPRIMHHMPGQPPYMPPP K K A P R I 4 1 0 0 0 3 0 6 0 0 0 1 2 0 6 0 2 0 0 5 0 0 30 1 2854.4946 P09012 P09012 123 152 SNRPA U1 small nuclear ribonucleoprotein A yes yes 3 4.7182E-55 170.18 By MS/MS By MS/MS 6 0 3 2 1 70531000 0 56700000 13831000 6803 481 7091;7092 28996;28997;28998 24586;24587;24588;24589;24590 24588 194;195 5 0 19628000 2069200 KAVSDMIMELAVHAQFITTTFRPELLESADK YLFDEIDQALDAQHRKAVSDMIMELAVHAQ ITTTFRPELLESADKFYGVKFRNKVSHIDV R K A D K F 4 1 0 2 0 1 3 0 1 2 3 2 2 2 1 2 3 0 0 2 0 0 31 2 3490.784 Q9UQE7 Q9UQE7 1155 1185 SMC3 Structural maintenance of chromosomes protein 3 yes yes 4 3.473E-12 71.068 By MS/MS 2 0 1 1 4886300 0 0 4886300 6804 2222 7093 28999 24591 24591 1 0 0 1104200 KAVSPLLLTTTNSSEGLSMGNYIGLINR NAAAKLAVEILNKEKKAVSPLLLTTTNSSE SEGLSMGNYIGLINRIAQKKRLTVNYEQCA K K A N R I 1 1 3 0 0 0 1 3 0 2 5 1 1 0 1 4 3 0 1 1 0 0 28 1 2948.5641 P19525 P19525 80 107 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 3 2.9347E-08 71.974 By MS/MS 3.5 0.5 1 1 2 4582000 0 4582000 0 6805 609 7094 29000;29001 24592;24593 24593 2 0 1678700 0 KAWPVFEHNILTR NCHLLKTIHVASHSRKAWPVFEHNILTRCS SRKAWPVFEHNILTRCSLHLGNRRGVFLPY R K A T R C 1 1 1 0 0 0 1 0 1 1 1 1 0 1 1 0 1 1 0 1 0 0 13 1 1609.8729 P03243;P03244 P03243 380 392 yes no 2;3;4 6.6337E-06 159.58 By MS/MS By MS/MS 4.22 2.47 4 4 4 4 4 2 3 2 8 19 838260000 0 184230000 654020000 6806 406 7095 29002;29003;29004;29005;29006;29007;29008;29009;29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027;29028 24594;24595;24596;24597;24598;24599;24600;24601;24602;24603;24604;24605;24606;24607;24608;24609;24610;24611;24612;24613;24614;24615;24616;24617;24618;24619;24620;24621 24597 28 0 61055000 126300000 KAYLPQELLGK IVSALSQTGSLFKPRKAYLPQELLGKEGFD FKPRKAYLPQELLGKEGFDALDPFIPILVS R K A G K E 1 0 0 0 0 1 1 1 0 0 3 2 0 0 1 0 0 0 1 0 0 0 11 1 1258.7285 P51398 P51398 321 331 DAP3 28S ribosomal protein S29, mitochondrial yes yes 2 0.001294 117.02 By MS/MS 5 0 1 1 5997100 0 0 5997100 6807 892 7096 29029 24622 24622 1 0 0 836480 KDAEAWFNEK NNMRSQYEQLAEQNRKDAEAWFNEKSKELT AEQNRKDAEAWFNEKSKELTTEIDNNIEQI R K D E K S 2 0 1 1 0 0 2 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 10 1 1236.5775 P13645;CON__P13645;Q7Z3Y7;CON__Q7Z3Y7 P13645 334 343 KRT10;KRT28 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28 yes no 2;3 2.0865E-173 300.62 By MS/MS By matching By MS/MS 5.81 3.07 3 3 3 3 3 3 1 3 4 5 16 2 13 1000300000 696730000 7329800 296210000 + 6808 56 7097 29030;29031;29032;29033;29034;29035;29036;29037;29038;29039;29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052;29053;29054;29055;29056;29057;29058;29059;29060 24623;24624;24625;24626;24627;24628;24629;24630;24631;24632;24633;24634;24635;24636;24637;24638;24639;24640;24641;24642;24643;24644;24645;24646;24647;24648;24649 24633 27 580430000 4729600 79635000 KDAEAWFTSR SDMRSQYEVMAEQNRKDAEAWFTSRTEELN AEQNRKDAEAWFTSRTEELNREVAGHTEQL R K D S R T 2 1 0 1 0 0 1 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 10 1 1209.5778 CON__P08727;P08727 CON__P08727 265 274 KRT19 Keratin, type I cytoskeletal 19 yes no 2 0.0010239 116.12 By MS/MS 5 0 1 1 16985000 0 0 16985000 + 6809 51 7098 29061 24650 24650 1 0 0 2369100 KDAEDWFFSK NEMRDQYEKMAEKNRKDAEDWFFSKTEELN AEKNRKDAEDWFFSKTEELNREVATNSELV R K D S K T 1 0 0 2 0 0 1 0 0 0 0 2 0 2 0 1 0 1 0 0 0 0 10 1 1271.5823 Q04695;CON__Q04695 Q04695 269 278 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.00083964 136.02 By MS/MS 4.5 0.5 1 1 2 16945000 0 0 16945000 + 6810 73 7099 29062;29063 24651 24651 1 0 0 2433200 KDAEEWFFTK NEMRDQYEKMAEKNRKDAEEWFFTKTEELN AEKNRKDAEEWFFTKTEELNREVATNSELV R K D T K T 1 0 0 1 0 0 2 0 0 0 0 2 0 2 0 0 1 1 0 0 0 0 10 1 1299.6136 CON__P02533;P02533;CON__Q6IFX2 CON__P02533 300 309 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.0055533 103.08 By MS/MS 8.5 0.5 1 1 2 4982200 4982200 0 0 + 6811 35;91 7100 29064;29065 24652 24652 1 3370300 0 0 KDDEENYLDLFSHK LLTAEIEKIQKGDSKKDDEENYLDLFSHKN KKDDEENYLDLFSHKNMKLKERVLIPVKQY K K D H K N 0 0 1 3 0 0 2 0 1 0 2 2 0 1 0 1 0 0 1 0 0 0 14 1 1751.8002 Q07666 Q07666 139 152 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 2.6319E-11 181.06 By matching By MS/MS 4.25 1.53 2 2 3 2 2 1 3 9 258820000 0 4733700 254080000 6812 1178 7101 29066;29067;29068;29069;29070;29071;29072;29073;29074;29075;29076;29077 24653;24654;24655;24656;24657;24658 24656 6 0 1749000 41757000 KDDEVQVVR KELRQKYNVRSMPIRKDDEVQVVRGHYKGQ RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R K D V R G 0 1 0 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 9 1 1086.5669 P61254;Q9UNX3 P61254 51 59 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 1.402E-41 211.79 By matching By MS/MS 7.83 1.34 1 2 1 1 1 1 5 87864000 0 5500700 82363000 6813 989 7102 29078;29079;29080;29081;29082;29083 24659;24660 24660 2 0 3158500 30568000 KDDPTLLSSGR DHIKELVDDSVNNVRKDDPTLLSSGRVQLV NNVRKDDPTLLSSGRVQLVVGDGRMGYAEE R K D G R V 0 1 0 2 0 0 0 1 0 0 2 1 0 0 1 2 1 0 0 0 0 0 11 1 1187.6146 P22061 P22061 125 135 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes yes 2 0.040597 82.417 By matching By MS/MS 7 0 2 1 1 6920000 0 1278700 5641300 6814 626 7103 29084;29085 24661 24661 1 0 734210 1001000 KDDPVTNLNNAFEVAEK IHRHRPELIEYDKLRKDDPVTNLNNAFEVA DPVTNLNNAFEVAEKYLDIPKMLDAEDIVN R K D E K Y 2 0 3 2 0 0 2 0 0 0 1 2 0 1 1 0 1 0 0 2 0 0 17 1 1902.9323 O43707 O43707 217 233 ACTN4 Alpha-actinin-4 yes yes 3 1.2696E-06 131.45 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 37384000 0 20757000 16627000 6815 210 7104 29086;29087;29088 24662;24663;24664 24662 3 0 9404600 3757400 KDEDLFR FDKAYVVLGQFLVLKKDEDLFREWLKDTCG LGQFLVLKKDEDLFREWLKDTCGANAKQSR K K D F R E 0 1 0 2 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 921.4556 O75531 O75531 54 60 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2 0.00023969 158.2 By matching By MS/MS 9.67 0.471 1 2 1 2 197820000 0 6332700 191490000 6816 269 7105 29089;29090;29091 24665;24666;24667 24665 3 0 32038000 253230000 KDEDPENKIEFK KEEEELMEKPQKETKKDEDPENKIEFKTRL ETKKDEDPENKIEFKTRLGRNVYRMLFKSK K K D F K T 0 0 1 2 0 0 3 0 0 1 0 3 0 1 1 0 0 0 0 0 0 0 12 2 1490.7253 Q13123 Q13123 198 209 IK Protein Red yes yes 3 0.0027854 95.98 By MS/MS 2.5 1.12 1 1 1 1 4 25671000 0 0 25671000 6817 1222 7106 29092;29093;29094;29095 24668 24668 1 0 0 5071900 KDEIENSIVHR ELIQRRRTRIGYSFKKDEIENSIVHRVQGV YSFKKDEIENSIVHRVQGVFQRASAKWKDD K K D H R V 0 1 1 1 0 0 2 0 1 2 0 1 0 0 0 1 0 0 0 1 0 0 11 1 1338.6892 Q9NYH9 Q9NYH9 81 91 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 3 0.034771 53.034 By MS/MS 3 0 1 1 18864000 0 0 18864000 6818 2098 7107 29096 24669 24669 1 0 0 3658700 KDELSDWSLAGEDDRDSR TNSELSNPSETESERKDELSDWSLAGEDDR LSDWSLAGEDDRDSRHQRDSRRRPGGRGRS R K D S R H 1 2 0 5 0 0 2 1 0 0 2 1 0 0 0 3 0 1 0 0 0 0 18 2 2092.9298 P51114 P51114 416 433 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 3 0.006864 57.496 By MS/MS 3 0 1 1 8588800 0 0 8588800 6819 887 7108 29097 24670 24670 1 0 0 1665800 KDHNIPGELER VIQYLAHVASSHKGRKDHNIPGELERQLLQ HKGRKDHNIPGELERQLLQANPILESFGNA R K D E R Q 0 1 1 1 0 0 2 1 1 1 1 1 0 0 1 0 0 0 0 0 0 0 11 1 1306.663 P35580 P35580 206 216 MYH10 Myosin-10 yes yes 3 0.017488 54.005 By MS/MS 1 0 1 1 0 0 0 0 6820 753 7109 29098 24671 24671 1 0 0 0 KDHPFGFVAVPTK GIALSRLAQERKAWRKDHPFGFVAVPTKNP WRKDHPFGFVAVPTKNPDGTMNLMNWECAI R K D T K N 1 0 0 1 0 0 0 1 1 0 0 2 0 2 2 0 1 0 0 2 0 0 13 1 1441.7718 P63279 P63279 18 30 UBE2I SUMO-conjugating enzyme UBC9 yes yes 3 0.035719 49.188 By MS/MS By matching 8 0 2 1 1 8596400 0 4164400 4432000 6821 1071 7110 29099;29100 24672 24672 1 0 1894700 679470 KDIENQYETQITQIEHEVSSSGQEVQSSAK NDMRQEYEQLIAKNRKDIENQYETQITQIE HEVSSSGQEVQSSAKEVTQLRHGVQELEIE R K D A K E 1 0 1 1 0 5 5 1 1 3 0 2 0 0 0 5 2 0 1 2 0 0 30 1 3391.6016 P35527;CON__P35527 P35527 339 368 KRT9 Keratin, type I cytoskeletal 9 yes no 4 2.5801E-205 282.94 By MS/MS By matching By MS/MS 4.85 2.63 1 2 2 2 1 1 1 1 2 5 2 6 300760000 201220000 5483700 94061000 + 6822 750 7111 29101;29102;29103;29104;29105;29106;29107;29108;29109;29110;29111;29112;29113 24673;24674;24675;24676;24677;24678;24679;24680;24681;24682;24683 24674 11 159340000 2586800 18793000 KDILLVNDHLLNFVR AIRHDVIVSIVTAAKKDILLVNDHLLNFVR KDILLVNDHLLNFVRERTLDKRWRVRKEAM K K D V R E 0 1 2 2 0 0 0 0 1 1 4 1 0 1 0 0 0 0 0 2 0 0 15 1 1808.0309 Q9NTI5 Q9NTI5 380 394 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 3.8353E-12 175.66 By MS/MS 2 0.816 1 1 1 3 30124000 0 0 30124000 6823 2053 7112 29114;29115;29116 24684;24685 24684 2 0 0 6603700 KDLFMFFR ECSELSEFVSRAEERKDLFMFFRSLHFFVE VSRAEERKDLFMFFRSLHFFVEWFEYRKRT R K D F R S 0 1 0 1 0 0 0 0 0 0 1 1 1 3 0 0 0 0 0 0 0 0 8 1 1102.5634 Q6IPU0 Q6IPU0 161 168 CENPP Centromere protein P yes yes 2 0.070442 76.134 By MS/MS 6 0 1 1 0 0 0 0 6824 1478 7113 29117 24686 24686 1 0 0 0 KDLPPLLLK SSEAVSLLEEVITPRKDLPPLLLKLNERPA EVITPRKDLPPLLLKLNERPAERLDYLGVS R K D L K L 0 0 0 1 0 0 0 0 0 0 4 2 0 0 2 0 0 0 0 0 0 0 9 1 1035.6692 Q9H0A0 Q9H0A0 689 697 NAT10 N-acetyltransferase 10 yes yes 2 0.0011638 129.38 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 26303000 0 9236400 17066000 6825 1959 7114 29118;29119;29120;29121 24687;24688 24688 2 0 4039400 3856600 KDLQNFLK HPDTLNQGEFKELVRKDLQNFLKKENKNEK EFKELVRKDLQNFLKKENKNEKVIEHIMED R K D L K K 0 0 1 1 0 1 0 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 8 1 1004.5655 P06702 P06702 43 50 S100A9 Protein S100-A9 yes yes 2 4.4314E-28 202.45 By MS/MS By MS/MS 7.5 1.71 1 1 1 1 1 1 5 1 33924000 30847000 0 3076700 6826 445 7115 29122;29123;29124;29125;29126;29127 24689;24690;24691 24690 3 27670000 0 6729100 KDLTEYLSR DGKMFIGGLSWDTSKKDLTEYLSRFGEVVD SWDTSKKDLTEYLSRFGEVVDCTIKTDPVT K K D S R F 0 1 0 1 0 0 1 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 9 1 1123.5873 O14979 O14979 162 170 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 0.0099895 95.775 By MS/MS 6 0 1 1 52997000 0 52997000 0 6827 157 7116 29128 24692 24692 1 0 18346000 0 KDLYANTVLSGGTTMYPGIADR ETTFNSIMKCDVDIRKDLYANTVLSGGTTM VLSGGTTMYPGIADRMQKEITALAPSTMKI R K D D R M 2 1 1 2 0 0 0 3 0 1 2 1 1 0 1 1 3 0 2 1 0 0 22 1 2342.1576 P60709;P63261 P60709 291 312 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 0 357.92 By MS/MS By MS/MS 5.06 1.52 1 1 2 8 2 1 1 8 8 605020000 0 274430000 330590000 6828 966;1069 7117;7118 29129;29130;29131;29132;29133;29134;29135;29136;29137;29138;29139;29140;29141;29142;29143;29144 24693;24694;24695;24696;24697;24698;24699;24700;24701;24702;24703;24704;24705;24706;24707;24708 24701 463 16 0 75201000 48496000 KDPELWGSVLLESNPYR ENSLFKSLSRYLVRRKDPELWGSVLLESNP PELWGSVLLESNPYRRPLIDQVVQTALSET R K D Y R R 0 1 1 1 0 0 2 1 0 0 3 1 0 0 2 2 0 1 1 1 0 0 17 1 2002.016 Q00610 Q00610 951 967 CLTC Clathrin heavy chain 1 yes yes 2;3 3.6269E-13 178.67 By MS/MS 1.33 0.471 2 1 3 21506000 0 0 21506000 6829 1125 7119 29145;29146;29147 24709;24710;24711 24709 1 0 0 4702900 KDPGVPNSAPFK KLRKEAKKRGHKKPRKDPGVPNSAPFKEAL KPRKDPGVPNSAPFKEALLREAELRKQRLE R K D F K E 1 0 1 1 0 0 0 1 0 0 0 2 0 1 3 1 0 0 0 1 0 0 12 1 1255.6561 Q9BVP2 Q9BVP2 46 57 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2;3 0.029022 87.001 By MS/MS By MS/MS 3.4 0.49 3 2 4 1 20629000 0 20629000 0 6830 1917 7120 29148;29149;29150;29151;29152 24712;24713;24714 24713 3 0 7750500 0 KDPQGLGLHFYK FYEGVVELSLTAAEKKDPQGLGLHFYKHGE AEKKDPQGLGLHFYKHGEPEEDIVGLQAFQ K K D Y K H 0 0 0 1 0 1 0 2 1 0 2 2 0 1 1 0 0 0 1 0 0 0 12 1 1401.7405 O75694 O75694 940 951 NUP155 Nuclear pore complex protein Nup155 yes yes 3 0.0016551 95.094 By MS/MS 2 0 1 1 8499500 0 0 8499500 6831 281 7121 29153 24715 24715 1 0 0 1920700 KDSGFQMNQLR KEDPQTFYYAVAVVKKDSGFQMNQLRGKKS AVVKKDSGFQMNQLRGKKSCHTGLGRSAGW K K D L R G 0 1 1 1 0 2 0 1 0 0 1 1 1 1 0 1 0 0 0 0 0 0 11 1 1322.6401 P02787 P02787 122 132 TF Serotransferrin yes yes 2 9.865E-19 185.6 By MS/MS 9 0 1 1 11784000 11784000 0 0 6832 399 7122 29154 24716 24716 1 6614500 0 0 KDVDAAYMNK INKRTAAENEFVTLKKDVDAAYMNKVELQA FVTLKKDVDAAYMNKVELQAKADTLTDEIN K K D N K V 2 0 1 2 0 0 0 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 10 1 1153.5438 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668;CON__P50446 CON__P48668 272 281 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 0.0022484 109.66 By MS/MS 6.67 4.03 1 1 1 3 3486000 3486000 0 0 + 6833 68;37;47;58;69 7123 29155;29156;29157 24717;24718 24718 2 3093000 0 0 KDVDEAYMNK INKRTEMENEFVLIKKDVDEAYMNKVELES FVLIKKDVDEAYMNKVELESRLEGLTDEIN K K D N K V 1 0 1 2 0 0 1 0 0 0 0 2 1 0 0 0 0 0 1 1 0 0 10 1 1211.5492 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 198 207 KRT8 Keratin, type II cytoskeletal 8 yes no 2 9.7967E-14 133.23 By MS/MS 5 0 1 1 0 0 0 0 + 6834 49 7124 29158 24719 24719 1 0 0 0 KDVDGAYMTK INKRTNAENEFVTIKKDVDGAYMTKVDLQA FVTIKKDVDGAYMTKVDLQAKLDNLQQEID K K D T K V 1 0 0 2 0 0 0 1 0 0 0 2 1 0 0 0 1 0 1 1 0 0 10 1 1126.5329 P04264;CON__P04264 P04264 289 298 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.1307E-91 252.82 By MS/MS By matching By MS/MS 5.48 2.76 2 2 3 4 2 2 3 2 3 2 12 6 7 240110000 158040000 10777000 71291000 + 6835 413 7125 29159;29160;29161;29162;29163;29164;29165;29166;29167;29168;29169;29170;29171;29172;29173;29174;29175;29176;29177;29178;29179;29180;29181;29182;29183 24720;24721;24722;24723;24724;24725;24726;24727;24728;24729;24730;24731;24732;24733;24734;24735;24736;24737;24738;24739;24740;24741;24742;24743;24744;24745;24746;24747;24748;24749;24750;24751;24752;24753;24754 24721 35 164770000 4814400 26117000 KDVDNAYMIK INKRTAAENDFVTLKKDVDNAYMIKVELQS FVTLKKDVDNAYMIKVELQSKVDLLNQEIE K K D I K V 1 0 1 2 0 0 0 0 0 1 0 2 1 0 0 0 0 0 1 1 0 0 10 1 1195.5907 CON__P35908;CON__P35908v2;P35908 CON__P35908 293 302 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 3.0692E-38 200.09 By MS/MS By MS/MS By MS/MS 6.04 2.87 3 1 2 2 3 3 4 2 3 4 15 3 9 530390000 386460000 12719000 131200000 + 6836 65;66 7126;7127 29184;29185;29186;29187;29188;29189;29190;29191;29192;29193;29194;29195;29196;29197;29198;29199;29200;29201;29202;29203;29204;29205;29206;29207;29208;29209;29210 24755;24756;24757;24758;24759;24760;24761;24762;24763;24764;24765;24766;24767;24768;24769;24770;24771;24772;24773;24774;24775 24756 50 21 385600000 6256800 49661000 KDVLTAHPAAPGPVSR HNGFSCSNCSMLSERKDVLTAHPAAPGPVS DVLTAHPAAPGPVSRVYSRDRNQKCDDCKG R K D S R V 3 1 0 1 0 0 0 1 1 0 1 1 0 0 3 1 1 0 0 2 0 0 16 1 1614.8842 O94901 O94901 195 210 SUN1 SUN domain-containing protein 1 yes yes 3 0.00089843 80.488 By MS/MS By MS/MS 2 0 2 1 1 10848000 0 4440700 6406900 6837 303 7128 29211;29212 24776;24777 24777 2 0 1999700 1447800 KDWYDVK GKKGAKKKVVDPFSKKDWYDVKAPAMFNIR KVVDPFSKKDWYDVKAPAMFNIRNIGKTLV K K D V K A 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 1 1 1 0 0 7 1 952.46543 P61247 P61247 28 34 RPS3A 40S ribosomal protein S3a yes yes 2 0.01405 123.72 By matching By MS/MS 6.33 0.471 2 1 1 2 106630000 0 26152000 80483000 6838 988 7129 29213;29214;29215 24778 24778 1 0 9052800 12110000 KEALESVEVLIK KDFYDKIEAKKWQERKEALESVEVLIKNPK QERKEALESVEVLIKNPKLEAGDYADLVKA R K E I K N 1 0 0 0 0 0 3 0 0 1 2 2 0 0 0 1 0 0 0 2 0 0 12 1 1356.7864 Q14008 Q14008 297 308 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 0.0018003 103.21 By MS/MS 2.2 1.17 2 1 1 1 5 31234000 0 0 31234000 6839 1279 7130 29216;29217;29218;29219;29220 24779;24780 24780 2 0 0 6438100 KEDALLYQSK LNSTRGDADMYDLPKKEDALLYQSKGYNDD YDLPKKEDALLYQSKGYNDDYYEESYFTTR K K E S K G 1 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 10 1 1193.6292 P50402 P50402 79 88 EMD Emerin yes yes 2 4.4341E-07 160.97 By MS/MS By MS/MS 6 0 2 1 1 38928000 0 6185300 32743000 6840 878 7131 29221;29222 24781;24782 24782 2 0 2141100 4898600 KEDLYLKPIQR GLKVRIMGPNYTPGKKEDLYLKPIQRTILM TPGKKEDLYLKPIQRTILMMGRYVEPIEDV K K E Q R T 0 1 0 1 0 1 1 0 0 1 2 2 0 0 1 0 0 0 1 0 0 0 11 2 1401.798 P13639 P13639 439 449 EEF2 Elongation factor 2 yes yes 3 0.00020551 117.83 By matching By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 1 3 42758000 3033300 13218000 26507000 6841 547 7132 29223;29224;29225;29226;29227 24783;24784;24785;24786 24784 4 3033300 5952200 5368700 KEDMEYALR ADVQKDGVGMVEYLRKEDMEYALRKLDDTK MVEYLRKEDMEYALRKLDDTKFRSHEGETS R K E L R K 1 1 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 9 1 1153.5438 Q13242 Q13242 155 163 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 0.034089 82.563 By MS/MS By matching 7 0 2 1 1 73582000 0 6002900 67579000 6842 1232 7133 29228;29229 24787 24787 1 0 3446900 11991000 KEDMTYAVR ADVYRDGTGVVEFVRKEDMTYAVRKLDNTK VVEFVRKEDMTYAVRKLDNTKFRSHEGETA R K E V R K 1 1 0 1 0 0 1 0 0 0 0 1 1 0 0 0 1 0 1 1 0 0 9 1 1111.5332 Q07955 Q07955 165 173 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 9.2803E-11 166.68 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 80743000 0 33647000 47096000 6843 1179 7134 29230;29231;29232;29233 24788;24789;24790;24791 24790 4 0 12260000 7257800 KEEELQAALAR ELQAQIAELKMQLAKKEEELQAALARVEEE QLAKKEEELQAALARVEEEAAQKNMALKKI K K E A R V 3 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1256.6725 P35579;Q7Z406 P35579 1081 1091 MYH9;MYH14 Myosin-9;Myosin-14 no no 2;3 2.6067E-89 250.06 By matching By MS/MS By MS/MS 1.55 0.656 6 4 1 2 4 5 657360000 3905500 490080000 163370000 6844 752;1531 7135 29234;29235;29236;29237;29238;29239;29240;29241;29242;29243;29244 24792;24793;24794;24795;24796;24797;24798;24799 24798 8 3905500 238470000 34906000 KEEELQGALAR ELQAQIDELKLQLAKKEEELQGALARGDDE QLAKKEEELQGALARGDDETLHKNNALKVV K K E A R G 2 1 0 0 0 1 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1242.6568 P35580 P35580 1088 1098 MYH10 Myosin-10 yes yes 2;3 9.7332E-20 194.94 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 91002000 0 66296000 24706000 6845 753 7136 29245;29246;29247;29248;29249 24800;24801;24802;24803 24801 4 0 32224000 5323300 KEEKAEPPQAMNALMR GEEKSPSKKKKKIQKKEEKAEPPQAMNALM EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ K K E M R L 3 1 1 0 0 1 3 0 0 0 1 2 2 0 2 0 0 0 0 0 0 0 16 2 1841.9128 Q12906 Q12906 393 408 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 3.1558E-13 100.41 By MS/MS 2.33 0.471 2 1 3 7608800 0 7608800 0 6846 1211 7137 29250;29251;29252 24804;24805 24805 2 0 3399100 0 KEELTLEGIR VTKKFMRDPIRILVKKEELTLEGIRQFYIN RILVKKEELTLEGIRQFYINVEREEWKLDT K K E I R Q 0 1 0 0 0 0 3 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1186.6558 P60842 P60842 238 247 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2 3.9639E-07 161.28 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 66996000 0 10068000 56928000 6847 967 7138 29253;29254;29255;29256 24806;24807 24807 2 0 2595200 8119600 KEEQEVQATLESEEVDLNAGLHGNWTLENAK PTWDRGANLKDYYSRKEEQEVQATLESEEV LNAGLHGNWTLENAKARLNQYFQKEKIQGE R K E A K A 3 0 3 1 0 2 7 2 1 0 4 2 0 0 0 1 2 1 0 2 0 0 31 1 3480.6645 Q08211 Q08211 152 182 DHX9 ATP-dependent RNA helicase A yes yes 3;4 2.7689E-183 273.96 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 81831000 0 6000900 75830000 6848 1182 7139 29257;29258;29259;29260;29261;29262 24808;24809;24810;24811 24811 4 0 2702300 16904000 KEESISLMK KLLREVAGTRVYDERKEESISLMKETEGKR RVYDERKEESISLMKETEGKREKINELLKY R K E M K E 0 0 0 0 0 0 2 0 0 1 1 2 1 0 0 2 0 0 0 0 0 0 9 1 1063.5583 Q9UQE7 Q9UQE7 172 180 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0011083 128.52 By matching By MS/MS 2.2 1.17 2 1 1 1 1 4 59721000 3688600 0 56032000 6849 2222 7140 29263;29264;29265;29266;29267 24812;24813 24813 2 3688600 0 11713000 KEETQPPVALK DRKNPLPPSVGVVDKKEETQPPVALKKEGI VVDKKEETQPPVALKKEGIRRVGRRPDQQL K K E L K K 1 0 0 0 0 1 2 0 0 0 1 2 0 0 2 0 1 0 0 1 0 0 11 1 1238.6871 Q8NC51 Q8NC51 92 102 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.069717 35.996 By MS/MS 4.5 0.5 1 1 2 9177300 0 0 9177300 6850 1630 7141 29268;29269 24814 24814 1 0 0 1336900 KEFSPFGSITSAK YIKNLDDTIDDEKLRKEFSPFGSITSAKVM LRKEFSPFGSITSAKVMLEDGRSKGFGFVC R K E A K V 1 0 0 0 0 0 1 1 0 1 0 2 0 2 1 3 1 0 0 0 0 0 13 1 1397.7191 Q13310 Q13310 312 324 PABPC4 Polyadenylate-binding protein 4 yes yes 2;3 7.6382E-05 136.38 By MS/MS 3 0 2 2 9859600 0 9859600 0 6851 1237 7142 29270;29271 24815;24816 24816 2 0 4203200 0 KEFSPFGTITSAK YVKNLDDGIDDERLRKEFSPFGTITSAKVM LRKEFSPFGTITSAKVMMEGGRSKGFGFVC R K E A K V 1 0 0 0 0 0 1 1 0 1 0 2 0 2 1 2 2 0 0 0 0 0 13 1 1411.7347 P11940 P11940 312 324 PABPC1 Polyadenylate-binding protein 1 yes yes 2;3 2.0404E-88 256.31 By MS/MS By MS/MS 3.82 1.99 1 1 4 2 2 1 6 5 183000000 0 106090000 76909000 6852 530 7143 29272;29273;29274;29275;29276;29277;29278;29279;29280;29281;29282 24817;24818;24819;24820;24821;24822;24823;24824 24818 8 0 43174000 14678000 KEGDLIAAQAR KVREEFKELKARNTKKEGDLIAAQARLKDL RNTKKEGDLIAAQARLKDLEALLNSKEAAL K K E A R L 3 1 0 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 11 1 1170.6357 P02545 P02545 123 133 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 2.731E-09 167.1 By MS/MS 3 0 1 1 12108000 0 0 12108000 6853 387 7144 29283 24825 24825 1 0 0 2348400 KEGGLGPLNIPLLADVTR VDSQFTHLAWINTPRKEGGLGPLNIPLLAD GLGPLNIPLLADVTRRLSEDYGVLKTDEGI R K E T R R 1 1 1 1 0 0 1 3 0 1 4 1 0 0 2 0 1 0 0 1 0 0 18 1 1862.0625 P32119 P32119 92 109 PRDX2 Peroxiredoxin-2 yes yes 3 0.00021502 86.179 By MS/MS By MS/MS 6.17 2.48 2 1 1 2 2 4 20666000 5314600 0 15352000 6854 727 7145 29284;29285;29286;29287;29288;29289 24826;24827;24828;24829 24829 4 3874900 0 2875700 KELPDPSQRPLGEPSAGLGEYLK SSPGDSSKKRGPKPRKELPDPSQRPLGEPS RPLGEPSAGLGEYLKGRKLDDTPSGAGKFP R K E L K G 1 1 0 1 0 1 3 3 0 0 4 2 0 0 4 2 0 0 1 0 0 0 23 2 2480.2911 Q9HC52 Q9HC52 205 227 CBX8 Chromobox protein homolog 8 yes yes 4 0.00092783 59.429 By MS/MS 5 0 1 1 7414900 0 0 7414900 6855 2008 7146 29290 24830 24830 1 0 0 1034200 KENALVQMADGNQAQLAMSHLNGHK GVYGDVQRVKILFNKKENALVQMADGNQAQ GNQAQLAMSHLNGHKLHGKPIRITLSKHQN K K E H K L 4 0 3 1 0 3 1 2 2 0 3 2 2 0 0 1 0 0 0 1 0 0 25 1 2704.3174 P26599 P26599 374 398 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 4 0.0046775 38.032 By MS/MS 4 0 1 1 8139000 0 0 8139000 6856 671 7147 29291 24831 24831 1 0 0 1329400 KEPFFHGHDNYDQLVR DMWSLGCMLASMIFRKEPFFHGHDNYDQLV EPFFHGHDNYDQLVRIAKVLGTEDLYDYID R K E V R I 0 1 1 2 0 1 1 1 2 0 1 1 0 2 1 0 0 0 1 1 0 0 16 1 2000.9493 P68400 P68400 229 244 CSNK2A1 Casein kinase II subunit alpha yes yes 2 8.6525E-05 113.25 By MS/MS 5 0 1 1 5141700 0 0 5141700 6857 1080 7148 29292 24832 24832 1 0 0 717180 KEPPKEETAQLTGPEAGR PGSDEVAKIQTPPPKKEPPKEETAQLTGPE PKEETAQLTGPEAGRKPARGVGSGGQGPPP K K E G R K 2 1 0 0 0 1 4 2 0 0 1 2 0 0 3 0 2 0 0 0 0 0 18 2 1936.9854 P48634 P48634 883 900 PRRC2A Protein PRRC2A yes yes 3 6.4299E-05 98.175 By MS/MS 1 0 1 1 2973100 0 0 2973100 6858 844 7149 29293 24833 24833 1 0 0 640590 KEPVDEDLYPEHYR FTFNIKLSSPVKRPRKEPVDEDLYPEHYRK RKEPVDEDLYPEHYRKYSDYIKGSNLDAPE R K E Y R K 0 1 0 2 0 0 3 0 1 0 1 1 0 0 2 0 0 0 2 1 0 0 14 1 1788.8319 P26358 P26358 961 974 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.00014121 112.96 By MS/MS 1.5 0.5 1 1 2 25665000 0 0 25665000 6859 667 7150 29294;29295 24834;24835 24835 2 0 0 5616400 KEPVDEDLYPEHYRK FTFNIKLSSPVKRPRKEPVDEDLYPEHYRK KEPVDEDLYPEHYRKYSDYIKGSNLDAPEP R K E R K Y 0 1 0 2 0 0 3 0 1 0 1 2 0 0 2 0 0 0 2 1 0 0 15 2 1916.9268 P26358 P26358 961 975 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 4 0.014509 57.288 By MS/MS 1 0 1 1 9463300 0 0 9463300 6860 667 7151 29296 24836 24836 1 0 0 2039000 KESDLNGAQIK KCKAEHDQLLLNYAKKESDLNGAQIKLREY NYAKKESDLNGAQIKLREYEAALNSKDAAL K K E I K L 1 0 1 1 0 1 1 1 0 1 1 2 0 0 0 1 0 0 0 0 0 0 11 1 1201.6303 P20700 P20700 124 134 LMNB1 Lamin-B1 yes yes 2;3 6.3169E-14 183.85 By MS/MS By MS/MS 3.4 0.49 3 2 2 3 27032000 0 7935700 19096000 6861 619 7152 29297;29298;29299;29300;29301 24837;24838;24839 24839 3 0 3383000 3679400 KESYSIYVYK TKAQKKDGKKRKRSRKESYSIYVYKVLKQV RKRSRKESYSIYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 3 1 0 0 10 1 1278.6496 P06899;Q16778;P33778;P23527;Q8N257;Q6DRA6;Q6DN03 P06899 35 44 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 2;3 9.1915E-07 157.78 By MS/MS By MS/MS By MS/MS 7.58 2.02 1 1 1 3 4 7 5 4 1 13 12 4499300000 9636200 1101300000 3388300000 6862 451;644;1601;1472 7153 29302;29303;29304;29305;29306;29307;29308;29309;29310;29311;29312;29313;29314;29315;29316;29317;29318;29319;29320;29321;29322;29323;29324;29325;29326;29327 24840;24841;24842;24843;24844;24845;24846;24847;24848;24849;24850;24851;24852;24853;24854;24855;24856;24857;24858;24859;24860;24861;24862;24863;24864;24865;24866 24846 27 8273000 669940000 765780000 KESYSIYVYKVLK TKAQKKDGKKRKRSRKESYSIYVYKVLKQV SRKESYSIYVYKVLKQVHPDTGISSKAMGI R K E L K Q 0 0 0 0 0 0 1 0 0 1 1 3 0 0 0 2 0 0 3 2 0 0 13 2 1618.897 P06899;Q16778;P33778;P23527;Q8N257;Q6DRA6;Q6DN03 P06899 35 47 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST3H2BB;HIST2H2BD;HIST2H2BC Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 3 0.010506 73.877 By matching By MS/MS 8.33 0.471 2 1 1 2 43975000 0 13686000 30289000 6863 451;644;1601;1472 7154 29328;29329;29330 24867 24867 1 0 6226500 5004700 KESYSVYVYK TKAQKKDGRKRKRSRKESYSVYVYKVLKQV RKRSRKESYSVYVYKVLKQVHPDTGISSKA R K E Y K V 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 3 2 0 0 10 1 1264.634 P57053;O60814 P57053 35 44 H2BFS;HIST1H2BK Histone H2B type F-S;Histone H2B type 1-K no no 2;3 1.3367E-10 166.97 By MS/MS By MS/MS By MS/MS 7.48 1.96 2 2 3 3 7 4 4 1 12 12 9286600000 15680000 1881100000 7389900000 6864 953 7155 29331;29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345;29346;29347;29348;29349;29350;29351;29352;29353;29354;29355 24868;24869;24870;24871;24872;24873;24874;24875;24876;24877;24878;24879;24880;24881;24882;24883;24884;24885;24886;24887;24888;24889;24890;24891;24892;24893;24894;24895;24896 24876 29 13462000 1209300000 1679700000 KETESEAEDNLDDLEK TTLAQEEPVAAPEPKKETESEAEDNLDDLE ETESEAEDNLDDLEKHLREKALRSMRKAQV K K E E K H 1 0 1 3 0 0 5 0 0 0 2 2 0 0 0 1 1 0 0 0 0 0 16 1 1863.8222 Q8IYB3 Q8IYB3 870 885 SRRM1 Serine/arginine repetitive matrix protein 1 yes yes 3 0.00073283 83.252 By MS/MS 2 0 1 1 9099600 0 0 9099600 6865 1591 7156 29356 24897 24897 1 0 0 2056300 KEVKEELSAVER DTATSTKRCPKTRPRKEVKEELSAVERLTQ RPRKEVKEELSAVERLTQTSGQSTHTHKEP R K E E R L 1 1 0 0 0 0 4 0 0 0 1 2 0 0 0 1 0 0 0 2 0 0 12 2 1415.762 P46013 P46013 2610 2621 MKI67 Antigen KI-67 yes yes 3 0.0015638 103.13 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 11560000 0 4956700 6603200 6866 821 7157 29357;29358 24898;24899 24898 2 0 2422800 1492200 KEWHGPPSQGPSYHDTR RHVVERHGRDTSGPRKEWHGPPSQGPSYHD WHGPPSQGPSYHDTRRMGDGRAGAGMITQH R K E T R R 0 1 0 1 0 1 1 2 2 0 0 1 0 0 3 2 1 1 1 0 0 0 17 1 1977.9082 Q9NWH9 Q9NWH9 966 982 SLTM SAFB-like transcription modulator yes yes 4 0.00057678 79.013 By MS/MS 2.5 1.12 1 1 1 1 4 11885000 0 0 11885000 6867 2078 7158 29359;29360;29361;29362 24900;24901 24901 2 0 0 2503000 KEWLLGMLGAESAK LRDFFELRLKYYGLRKEWLLGMLGAESAKL RKEWLLGMLGAESAKLNNQARFILEKIDGK R K E A K L 2 0 0 0 0 0 2 2 0 0 3 2 1 0 0 1 0 1 0 0 0 0 14 1 1531.8068 P11388 P11388 1034 1047 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.2262E-12 122.45 By MS/MS 1.5 0.5 2 2 4 44593000 0 0 44593000 6868 524 7159 29363;29364;29365;29366 24902;24903;24904;24905 24905 4 0 0 9691900 KEWLTNFMEDR AAISLAFSKKQIDDRKEWLTNFMEDRRQRK IDDRKEWLTNFMEDRRQRKLLGLPEDYLYG R K E D R R 0 1 1 1 0 0 2 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 11 1 1467.6816 P11388;Q02880 P11388 662 672 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2;3 2.3207E-19 193.52 By matching By MS/MS 1.4 0.49 3 2 1 4 60231000 0 687750 59544000 6869 524;1150 7160 29367;29368;29369;29370;29371 24906;24907;24908;24909 24907 4 0 336160 13066000 KEWLTNFMEDRR AAISLAFSKKQIDDRKEWLTNFMEDRRQRK DDRKEWLTNFMEDRRQRKLLGLPEDYLYGQ R K E R R Q 0 2 1 1 0 0 2 0 0 0 1 1 1 1 0 0 1 1 0 0 0 0 12 2 1623.7828 P11388;Q02880 P11388 662 673 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 3 0.00015946 125.54 By MS/MS 1.5 0.5 1 1 2 24000000 0 0 24000000 6870 524;1150 7161 29372;29373 24910 24910 1 0 0 5227500 KEYEEIMR DKKRLKWIHKALEQRKEYEEIMRDYIQKHP HKALEQRKEYEEIMRDYIQKHPELNISEEG R K E M R D 0 1 0 0 0 0 3 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 8 1 1096.5223 P17480 P17480 254 261 UBTF Nucleolar transcription factor 1 yes yes 2 0.0099606 98.997 By MS/MS 2.5 0.5 1 1 2 15263000 0 0 15263000 6871 584 7162 29374;29375 24911;24912 24911 2 0 0 3101700 KFDILVTTPNR KAAVAAKKFGPKSSKKFDILVTTPNRLIYL KSSKKFDILVTTPNRLIYLLKQDPPGIDLA K K F N R L 0 1 1 1 0 0 0 0 0 1 1 1 0 1 1 0 2 0 0 1 0 0 11 1 1302.7296 Q9Y2R4 Q9Y2R4 285 295 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 2 0.0017321 114.45 By MS/MS 3 0 1 1 6995900 0 0 6995900 6872 2246 7163 29376 24913 24913 1 0 0 1356900 KFDPMGQQTCSAHPAR QYYLNEQGDRVYTLKKFDPMGQQTCSAHPA FDPMGQQTCSAHPARFSPDDKYSRHRITIK K K F A R F 2 1 0 1 1 2 0 1 1 0 0 1 1 1 2 1 1 0 0 0 0 0 16 1 1829.8301 Q9NPE3 Q9NPE3 19 34 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 3;4 0.00071555 83.54 By matching By MS/MS 10 0 3 1 2 9890600 0 898350 8992300 6873 2026 7164 29377;29378;29379 24914;24915 24915 2 0 4544900 19667000 KFDQLLAEEK DHQRQSACNLEKKQKKFDQLLAEEKTISAK EKKQKKFDQLLAEEKTISAKYAEERDRAEA K K F E K T 1 0 0 1 0 1 2 0 0 0 2 2 0 1 0 0 0 0 0 0 0 0 10 1 1219.6449 P35579;P35580;Q7Z406 P35579 1445 1454 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 2;3 1.2515E-29 202.96 By MS/MS By MS/MS 1.62 0.696 4 3 1 3 5 514850000 0 349270000 165590000 6874 752;753;1531 7165 29380;29381;29382;29383;29384;29385;29386;29387 24916;24917;24918;24919;24920;24921;24922 24916 6 0 170020000 35702000 KFDVNTSAVQVLIEHIGNLDR AISNELFEEAFAIFRKFDVNTSAVQVLIEH SAVQVLIEHIGNLDRAYEFAERCNEPAVWS R K F D R A 1 1 2 2 0 1 1 1 1 2 2 1 0 1 0 1 1 0 0 3 0 0 21 1 2367.2547 Q00610 Q00610 1074 1094 CLTC Clathrin heavy chain 1 yes yes 3;4 1.8585E-11 114.39 By MS/MS 1.5 0.5 2 2 4 52076000 0 0 52076000 6875 1125 7166 29388;29389;29390;29391 24923;24924;24925;24926 24926 4 0 0 11300000 KFEEETVK ETGKKDQSKQKESQRKFEEETVKSKVTVDT KQKESQRKFEEETVKSKVTVDTGVIPASEE R K F V K S 0 0 0 0 0 0 3 0 0 0 0 2 0 1 0 0 1 0 0 1 0 0 8 1 1008.5128 O60841 O60841 275 282 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.018355 93.143 By matching By MS/MS 2 0.816 1 1 1 2 1 9257000 0 4434200 4822800 6876 236 7167 29392;29393;29394 24927 24927 1 0 2012000 935400 KFEEFQTDMAAHEER EELGQDLEHVEVLQKKFEEFQTDMAAHEER KFEEFQTDMAAHEERVNEVNQFAAKLIQEQ K K F E R V 2 1 0 1 0 1 4 0 1 0 0 1 1 2 0 0 1 0 0 0 0 0 15 1 1866.8207 Q13813 Q13813 190 204 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 1.6835E-35 213.83 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 51264000 0 5834800 45429000 6877 1268 7168 29395;29396;29397 24928;24929 24929 2 0 2852000 9856400 KFEQLKQER GRAQKKVERQAELKRKFEQLKQERISRYQG QAELKRKFEQLKQERISRYQGVNLYIKNLD R K F E R I 0 1 0 0 0 2 2 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 9 2 1204.6564 Q13310 Q13310 279 287 PABPC4 Polyadenylate-binding protein 4 yes yes 3 0.0029858 89.08 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 4 1 9408700 0 6469300 2939400 6878 1237 7169 29398;29399;29400;29401;29402 24930;24931 24930 2 0 2670100 570100 KFESEILEAISQNSVVIIR DLQAILQERELLPVKKFESEILEAISQNSV EILEAISQNSVVIIRGATGCGKTTQVPQFI K K F I R G 1 1 1 0 0 1 3 0 0 4 1 1 0 1 0 3 0 0 0 2 0 0 19 1 2174.1947 Q08211 Q08211 392 410 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.8765E-52 226.93 By MS/MS 2 0.707 1 2 1 4 32822000 0 0 32822000 6879 1182 7170 29403;29404;29405;29406 24932;24933;24934 24934 3 0 0 7345900 KFGDPVVQSDMK NPQNTVFDAKRLIGRKFGDPVVQSDMKHWP IGRKFGDPVVQSDMKHWPFQVINDGDKPKV R K F M K H 0 0 0 2 0 1 0 1 0 0 0 2 1 1 1 1 0 0 0 2 0 0 12 1 1349.6649 P0DMV9;P0DMV8 P0DMV9 77 88 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 8.4589E-12 178.71 By MS/MS By MS/MS 3 0.577 1 4 1 4 2 126270000 0 50734000 75536000 6880 501 7171 29407;29408;29409;29410;29411;29412 24935;24936;24937;24938 24935 4 0 21510000 14650000 KFGQYAGHVVPTILEK LAAKCLTGLAVGLRKKFGQYAGHVVPTILE FGQYAGHVVPTILEKFKEKKPQVVQALQEA K K F E K F 1 0 0 0 0 1 1 2 1 1 1 2 0 1 1 0 1 0 1 2 0 0 16 1 1785.9778 Q14008 Q14008 354 369 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.0052306 60.509 By MS/MS 1.5 0.5 1 1 2 21951000 0 0 21951000 6881 1279 7172 29413;29414 24939 24939 1 0 0 4783600 KFGYVDFESAEDLEK KNDLAVVDVRIGMTRKFGYVDFESAEDLEK KFGYVDFESAEDLEKALELTGLKVFGNEIK R K F E K A 1 0 0 2 0 0 3 1 0 0 1 2 0 2 0 1 0 0 1 1 0 0 15 1 1775.8254 P19338 P19338 348 362 NCL Nucleolin yes yes 2;3 2.2371E-218 292.76 By MS/MS By MS/MS 2.75 1.36 2 4 3 2 1 2 10 294370000 0 16777000 277590000 6882 604 7173 29415;29416;29417;29418;29419;29420;29421;29422;29423;29424;29425;29426 24940;24941;24942;24943;24944;24945;24946;24947;24948 24948 9 0 7430900 58888000 KFLDGIYVSEK ALIQQATTVKNKDIRKFLDGIYVSEKGTVQ KDIRKFLDGIYVSEKGTVQQADE_______ R K F E K G 0 0 0 1 0 0 1 1 0 1 1 2 0 1 0 1 0 0 1 1 0 0 11 1 1297.6918 Q5IFJ7;P32969 Q5IFJ7 174 184 RPL9 60S ribosomal protein L9 yes no 2 0.063195 77.124 By MS/MS By matching 7 0 2 1 1 88368000 0 19675000 68693000 6883 729 7174 29427;29428 24949 24949 1 0 11298000 12189000 KFNALFAQGNYSEAAK AVRNNLAGAEELFARKFNALFAQGNYSEAA FNALFAQGNYSEAAKVAANAPKGILRTPDT R K F A K V 4 0 2 0 0 1 1 1 0 0 1 2 0 2 0 1 0 0 1 0 0 0 16 1 1757.8737 Q00610 Q00610 367 382 CLTC Clathrin heavy chain 1 yes yes 2;3 2.2306E-90 253.42 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 180110000 0 47953000 132160000 6884 1125 7175 29429;29430;29431;29432;29433;29434;29435;29436 24950;24951;24952;24953;24954;24955;24956 24954 7 0 22338000 28800000 KFPGSAALVGAVR RQAGPAPAAATAASKKFPGSAALVGAVRKP SKKFPGSAALVGAVRKPVVPSVPMASPAPG K K F V R K 3 1 0 0 0 0 0 2 0 0 1 1 0 1 1 1 0 0 0 2 0 0 13 1 1271.735 Q9BTC0 Q9BTC0 627 639 DIDO1 Death-inducer obliterator 1 yes yes 2;3 0.014269 84.17 By MS/MS 1 0 2 2 12547000 0 0 12547000 6885 1900 7176 29437;29438 24957;24958 24958 2 0 0 2703500 KFQPLFGDFAAEK RLPKEKVPRGSGKKRKFQPLFGDFAAEKKN KRKFQPLFGDFAAEKKNQLELLRVMNSKKP R K F E K K 2 0 0 1 0 1 1 1 0 0 1 2 0 3 1 0 0 0 0 0 0 0 13 1 1496.7664 Q15050 Q15050 253 265 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0080413 101.56 By MS/MS 4.5 1.12 1 1 1 1 4 33021000 0 0 33021000 6886 1337 7177 29439;29440;29441;29442 24959 24959 1 0 0 4899300 KFSGFSAKPNNSGEAPSSPTPK SPVKGASFVTSTNPRKFSGFSAKPNNSGEA KPNNSGEAPSSPTPKRSLSSSKCDPRHKDC R K F P K R 2 0 2 0 0 0 1 2 0 0 0 3 0 2 4 5 1 0 0 0 0 0 22 2 2234.0968 P49916 P49916 225 246 LIG3 DNA ligase 3 yes yes 4 0.040566 32.457 By MS/MS 2 0 1 1 7278700 0 0 7278700 6887 874 7178 29443 24960 24960 1 0 0 1644800 KFTQVLEDDEK TRNLPDPGKAQDFMKKFTQVLEDDEKIRKQ DFMKKFTQVLEDDEKIRKQLEVLVSPTCSC K K F E K I 0 0 0 2 0 1 2 0 0 0 1 2 0 1 0 0 1 0 0 1 0 0 11 1 1350.6667 Q9NTI5 Q9NTI5 548 558 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 1.6341E-05 151.79 By matching By MS/MS 1.33 0.471 2 1 1 2 31324000 6009200 0 25315000 6888 2053 7179 29444;29445;29446 24961 24961 1 6009200 0 5551500 KFTQVLEDDEKIR TRNLPDPGKAQDFMKKFTQVLEDDEKIRKQ MKKFTQVLEDDEKIRKQLEVLVSPTCSCKQ K K F I R K 0 1 0 2 0 1 2 0 0 1 1 2 0 1 0 0 1 0 0 1 0 0 13 2 1619.8519 Q9NTI5 Q9NTI5 548 560 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.040821 55.841 By MS/MS 1.5 0.5 1 1 2 13009000 0 0 13009000 6889 2053 7180 29447;29448 24962 24962 1 0 0 2853000 KFVADGIFK ______________________________ QISKKRKFVADGIFKAELNEFLTRELAEDG R K F F K A 1 0 0 1 0 0 0 1 0 1 0 2 0 2 0 0 0 0 0 1 0 0 9 1 1023.5753 P23396 P23396 10 18 RPS3 40S ribosomal protein S3 yes yes 2 0.00094896 117.53 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 95448000 0 14747000 80701000 6890 641 7181 29449;29450;29451;29452 24963;24964 24964 2 0 8467800 12406000 KFVIHPESNNLIIIETDHNAYTEATK AVFNQVAFPLQYTPRKFVIHPESNNLIIIE IIIETDHNAYTEATKAQRKQQMAEEMVEAA R K F T K A 2 0 3 1 0 0 3 0 2 4 1 2 0 1 1 1 3 0 1 1 0 0 26 1 2996.5244 Q15393 Q15393 787 812 SF3B3 Splicing factor 3B subunit 3 yes yes 4 2.5861E-08 79.021 By MS/MS 1.5 0.5 1 1 2 34852000 0 0 34852000 6891 1361 7182 29453;29454 24965 24965 1 0 0 7732600 KFVMKPPQVVR IMREKNPDMVAGEKRKFVMKPPQVVRVGTK GEKRKFVMKPPQVVRVGTKKTSFVNFTDIC R K F V R V 0 1 0 0 0 1 0 0 0 0 0 2 1 1 2 0 0 0 0 3 0 0 11 2 1327.7798 P20042 P20042 201 211 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 3 0.072378 50.108 By MS/MS 4.5 0.5 1 1 2 43323000 0 0 43323000 6892 613 7183 29455;29456 24966 24966 1 0 0 6135500 KFVTDSNAVVQLK DEKSPEWSKFLGLIKKFVTDSNAVVQLKGL IKKFVTDSNAVVQLKGLEAALVYVENAHVA K K F L K G 1 0 1 1 0 1 0 0 0 0 1 2 0 1 0 1 1 0 0 3 0 0 13 1 1447.8035 Q14008 Q14008 55 67 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00047011 132.69 By MS/MS 1 0 1 1 15431000 0 0 15431000 6893 1279 7184 29457 24967 24967 1 0 0 3324900 KFYGPEGPYGVFAGR LMAINGKVFDVTKGRKFYGPEGPYGVFAGR KFYGPEGPYGVFAGRDASRGLATFCLDKEA R K F G R D 1 1 0 0 0 0 1 4 0 0 0 1 0 2 2 0 0 0 2 1 0 0 15 1 1643.8096 O00264 O00264 105 119 PGRMC1 Membrane-associated progesterone receptor component 1 yes yes 3 0.0050875 65.472 By matching By MS/MS 6.5 0.5 1 1 1 1 5133200 1088000 0 4045200 6894 114 7185 29458;29459 24968 24968 1 1448700 0 717800 KFYPLEIDYGQDEEAVK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA YPLEIDYGQDEEAVKKLTVNPGTKSKLPKP K K F V K K 1 0 0 2 0 1 3 1 0 1 1 2 0 1 1 0 0 0 2 1 0 0 17 1 2042.9837 P09874 P09874 637 653 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 3.5057E-09 171.21 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 241970000 0 18105000 223860000 6895 492 7186 29460;29461;29462;29463;29464 24969;24970;24971;24972;24973 24973 5 0 8152800 50359000 KFYPLEIDYGQDEEAVKK TGNAWHSKNFTKYPKKFYPLEIDYGQDEEA PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV K K F K K L 1 0 0 2 0 1 3 1 0 1 1 3 0 1 1 0 0 0 2 1 0 0 18 2 2171.0787 P09874 P09874 637 654 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 1.9862E-38 214.11 By MS/MS By MS/MS 2 0.943 3 4 1 1 1 8 358690000 0 25600000 333090000 6896 492 7187 29465;29466;29467;29468;29469;29470;29471;29472;29473 24974;24975;24976;24977;24978;24979 24979 6 0 11528000 74124000 KGAGSVFR ______________________________ RVIRGQRKGAGSVFRAHVKHRKGAARLRAV R K G F R A 1 1 0 0 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 1 0 0 8 1 820.45554 P62917 P62917 10 17 RPL8 60S ribosomal protein L8 yes yes 2 0.034419 84.568 By MS/MS By matching 7 0.816 1 1 1 2 1 2608900 0 2575300 33595 6897 1052 7188 29474;29475;29476 24980;24981 24980 2 0 958560 5150.4 KGAIDDLQQGELEAFIQNLNLAK LATLDENEEVIDGGKKGAIDDLQQGELEAF QGELEAFIQNLNLAKYTKASLVEEDEPAEK K K G A K Y 3 0 2 2 0 3 2 2 0 2 4 2 0 1 0 0 0 0 0 0 0 0 23 1 2527.3282 Q03701 Q03701 73 95 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 1.0256E-05 77.576 By MS/MS 2 0 1 1 4408300 0 0 4408300 6898 1157 7189 29477 24982 24982 1 0 0 996200 KGAVAEDGDELRTEPEAK ______________________________ VAEDGDELRTEPEAKKSKTAAKKNDKEAAG K K G A K K 3 1 0 2 0 0 4 2 0 0 1 2 0 0 1 0 1 0 0 1 0 0 18 2 1913.933 P27695 P27695 7 24 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 3 1.0979E-06 109.54 By MS/MS 5.5 0.5 1 1 2 8776700 0 0 8776700 6899 680 7190 29478;29479 24983 24983 1 0 0 1271200 KGDEVDGVDEVAK ALKKQLPGVKSEGKRKGDEVDGVDEVAKKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK R K G A K K 1 0 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 13 1 1359.6518 P09874 P09874 209 221 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 6.7893E-11 174.72 By MS/MS 2 0 3 3 43131000 0 43131000 0 6900 492 7191 29480;29481;29482 24984;24985;24986 24984 3 0 19422000 0 KGDEVDGVDEVAKK ALKKQLPGVKSEGKRKGDEVDGVDEVAKKK RKGDEVDGVDEVAKKKSKKEKDKDSKLEKA R K G K K K 1 0 0 3 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 3 0 0 14 2 1487.7468 P09874 P09874 209 222 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 0.045512 51.591 By MS/MS 2 0 1 1 6534700 0 6534700 0 6901 492 7192 29483 24987 24987 1 0 2942600 0 KGDILTLLNSTNKDWWK LYDYQEKSPREVTMKKGDILTLLNSTNKDW DILTLLNSTNKDWWKVEVNDRQGFVPAAYV K K G W K V 0 0 2 2 0 0 0 1 0 1 3 3 0 0 0 1 2 2 0 0 0 0 17 2 2031.0789 Q13813 Q13813 990 1006 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 0.0011264 76.713 By MS/MS 1 0 1 1 2340600 0 0 2340600 6902 1268 7193 29484 24988 24988 1 0 0 504320 KGDIVDIK KHGVVPLATYMRIYKKGDIVDIKGMGTVQK TYMRIYKKGDIVDIKGMGTVQKGMPHKCYH K K G I K G 0 0 0 2 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 1 0 0 8 1 886.51238 P46778 P46778 36 43 RPL21 60S ribosomal protein L21 yes yes 2 0.00042883 136.21 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 142800000 0 10859000 131940000 6903 829 7194 29485;29486;29487 24989;24990;24991 24989 3 0 6235200 23161000 KGDMDELEKEMLSVEK AKKSLQNAQKHYKKRKGDMDELEKEMLSVE GDMDELEKEMLSVEKARQEFEERMEEESQS R K G E K A 0 0 0 2 0 0 4 1 0 0 2 3 2 0 0 1 0 0 0 1 0 0 16 2 1879.8907 Q14683 Q14683 330 345 SMC1A Structural maintenance of chromosomes protein 1A yes yes 3 0.037976 46.162 By matching By MS/MS 1.33 0.471 2 1 1 2 9062400 1420100 0 7642300 6904 1312 7195 29488;29489;29490 24992 24992 1 1420100 0 1673400 KGDSWAYIQYESLDAAHAAWTHMR REFDRFGTIRTIDYRKGDSWAYIQYESLDA YESLDAAHAAWTHMRGFPLGGPDRRLRVDF R K G M R G 5 1 0 2 0 1 1 1 2 1 1 1 1 0 0 2 1 2 2 0 0 0 24 1 2806.2922 Q96T37 Q96T37 488 511 RBM15 Putative RNA-binding protein 15 yes yes 4 1.3443E-20 126.04 By MS/MS 2 0 1 1 7627700 0 0 7627700 6905 1838 7196 29491 24993 24993 1 0 0 1723700 KGDTFSCMVGHEALPLAFTQK FAVTSILRVAAEDWKKGDTFSCMVGHEALP CMVGHEALPLAFTQKTIDRLAGKPTHVNVS K K G Q K T 2 0 0 1 1 1 1 2 1 0 2 2 1 2 1 1 2 0 0 1 0 0 21 1 2336.1293 P01876 P01876 307 327 IGHA1 Ig alpha-1 chain C region yes yes 4 0.00019588 68.762 By MS/MS 9 0 1 1 5506700 5506700 0 0 6906 386 7197 29492 24994 24994 1 3091000 0 0 KGDVEGSQSQDEGEGSGESER FQKLVPGGKATLVMKKGDVEGSQSQDEGEG SQSQDEGEGSGESERGSGSQSSVPSVDQFT K K G E R G 0 1 0 2 0 2 5 5 0 0 0 1 0 0 0 4 0 0 0 1 0 0 21 1 2165.8945 Q9UQE7 Q9UQE7 1059 1079 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.0013242 58.952 By MS/MS 2 0 1 1 1559000 0 1559000 0 6907 2222 7198 29493 24995 24995 1 0 702040 0 KGEIFELK ______________________________ KYFTTNKKGEIFELKAELNNEKKEKRKEAV K K G L K A 0 0 0 0 0 0 2 1 0 1 1 2 0 1 0 0 0 0 0 0 0 0 8 1 962.54368 P63010;Q10567 P63010 12 19 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 2 0.00046109 134.77 By MS/MS 2 0 1 1 4155300 0 4155300 0 6908 1057;1193 7199 29494 24996 24996 1 0 1871200 0 KGEITGEVHMPSGK LGFKPFDLVIPFAVRKGEITGEVHMPSGKT RKGEITGEVHMPSGKTATPEIVDNKDGTVT R K G G K T 0 0 0 0 0 0 2 3 1 1 0 2 1 0 1 1 1 0 0 1 0 0 14 1 1468.7344 O75369 O75369 1757 1770 FLNB Filamin-B yes yes 3 0.014086 58.158 By MS/MS 1 0 1 1 5550400 0 0 5550400 6909 254 7200 29495 24997 24997 1 0 0 1195900 KGEKDIPGLTDTTVPR IVDANLSVLNLVIVKKGEKDIPGLTDTTVP GEKDIPGLTDTTVPRRLGPKRASRIRKLFN K K G P R R 0 1 0 2 0 0 1 2 0 1 1 2 0 0 2 0 3 0 0 1 0 0 16 2 1725.9261 P62753 P62753 116 131 RPS6 40S ribosomal protein S6 yes yes 3 1.1308E-05 121.32 By MS/MS 6.5 0.5 1 1 2 20740000 0 20740000 0 6910 1032 7201 29496;29497 24998 24998 1 0 7621600 0 KGENYVYINEATR VEDPETGLYLLQIIKKGENYVYINEATRHV IKKGENYVYINEATRHVLQSRTAKMRVGRF K K G T R H 1 1 2 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 2 1 0 0 13 1 1555.7631 P58107 P58107 1762 1774 EPPK1 Epiplakin yes yes 2;3 0.0022727 110.98 By MS/MS By MS/MS 1 0 2 1 1 26029000 0 7810600 18218000 6911 958 7202 29498;29499 24999;25000 25000 2 0 3817700 3925400 KGEQMNSAVLPEMENQVAVSSLSAVIK TKDIYQDLNRLLKGKKGEQMNSAVLPEMEN MENQVAVSSLSAVIKFLELLSDDSNFGQFE K K G I K F 3 0 2 0 0 2 3 1 0 1 2 2 2 0 1 4 0 0 0 4 0 0 27 1 2858.4518 P43246 P43246 249 275 MSH2 DNA mismatch repair protein Msh2 yes yes 3 1.0065E-06 64.16 By MS/MS 2 0 1 1 4702100 0 0 4702100 6912 813 7203 29500 25001 25001 1 0 0 1062600 KGFNEGLWEIDNNPK PYSENKEKYGKPNKRKGFNEGLWEIDNNPK KGFNEGLWEIDNNPKVKFSSQQAATKQSNA R K G P K V 0 0 3 1 0 0 2 2 0 1 1 2 0 1 1 0 0 1 0 0 0 0 15 1 1759.8529 O75475 O75475 75 89 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 2.5137E-224 321.79 By MS/MS 3.92 1.89 2 1 2 2 2 2 1 12 132000000 0 0 132000000 6913 262 7204 29501;29502;29503;29504;29505;29506;29507;29508;29509;29510;29511;29512 25002;25003;25004;25005;25006;25007;25008;25009 25006 8 0 0 22310000 KGFNEGLWEIENNPGVK PYKEYKDKFGKSNKRKGFNEGLWEIENNPG FNEGLWEIENNPGVKFTGYQAIQQQSSSET R K G V K F 0 0 3 0 0 0 3 3 0 1 1 2 0 1 1 0 0 1 0 1 0 0 17 1 1929.9585 Q9Y3E1 Q9Y3E1 79 95 HDGFRP3 Hepatoma-derived growth factor-related protein 3 yes yes 2;3 1.5066E-47 219.16 By matching By MS/MS 6.25 0.433 3 1 1 3 26296000 0 2228900 24067000 6914 2273 7205 29513;29514;29515;29516 25010;25011 25010 2 0 771570 3756800 KGFNPPVLVFVQSIER GSETGKLLAMRELVKKGFNPPVLVFVQSIE GFNPPVLVFVQSIERAKELFHELIYEGINV K K G E R A 0 1 1 0 0 1 1 1 0 1 1 1 0 2 2 1 0 0 0 3 0 0 16 1 1829.02 Q9Y2R4 Q9Y2R4 409 424 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 3 0.030779 49.595 By MS/MS 3 0 1 1 2384200 0 0 2384200 6915 2246 7206 29517 25012 25012 0 0 0 462430 KGFSEGLWEIENNPTVK PYEESKEKFGKPNKRKGFSEGLWEIENNPT FSEGLWEIENNPTVKASGYQSSQKKSCVEE R K G V K A 0 0 2 0 0 0 3 2 0 1 1 2 0 1 1 1 1 1 0 1 0 0 17 1 1946.9738 P51858 P51858 80 96 HDGF Hepatoma-derived growth factor yes yes 2;3 3.6122E-09 171.11 By MS/MS 5.8 0.748 2 2 1 5 38463000 0 0 38463000 6916 899 7207 29518;29519;29520;29521;29522 25013;25014;25015 25014 3 0 0 5734700 KGGKEFVEAVLELR ADIDLKDDLGNTLEKKGGKEFVEAVLELRK KKGGKEFVEAVLELRKKNGPLEVAGAAVSA K K G L R K 1 1 0 0 0 0 3 2 0 0 2 2 0 1 0 0 0 0 0 2 0 0 14 2 1573.8828 O75367 O75367 236 249 H2AFY Core histone macro-H2A.1 yes yes 3 0.0038121 78.285 By MS/MS 5.5 0.5 1 1 2 3827300 0 3827300 0 6917 253 7208 29523;29524 25016 25016 1 0 1124000 0 KGGPSPGDVEAIK SKTFNPGAGLPTDKKKGGPSPGDVEAIKNA KKKGGPSPGDVEAIKNAIANASTLAEVERL K K G I K N 1 0 0 1 0 0 1 3 0 1 0 2 0 0 2 1 0 0 0 1 0 0 13 1 1253.6616 P09661 P09661 193 205 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 0.011368 96.23 By matching By MS/MS 7 0 2 1 1 7623700 0 2361900 5261800 6918 491 7209 29525;29526 25017 25017 1 0 1356200 933670 KGGSFQLNELQGLK ERQPRTHYYAVAVVKKGGSFQLNELQGLKS KKGGSFQLNELQGLKSCHTGLRRTAGWNVP K K G L K S 0 0 1 0 0 2 1 3 0 0 3 2 0 1 0 1 0 0 0 0 0 0 14 1 1517.8202 P02788 P02788 119 132 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2;3 8.8933E-107 267.37 By MS/MS By matching 5.11 3.05 2 4 1 2 2 2 2 1 2 15 3 139790000 130960000 8822300 0 6919 400 7210 29527;29528;29529;29530;29531;29532;29533;29534;29535;29536;29537;29538;29539;29540;29541;29542;29543;29544 25018;25019;25020;25021;25022;25023;25024;25025;25026;25027;25028;25029;25030 25028 13 166700000 3747700 0 KGHAVGDIPGVR FIEENDEVLVAGFGRKGHAVGDIPGVRFKV FGRKGHAVGDIPGVRFKVVKVANVSLLALY R K G V R F 1 1 0 1 0 0 0 3 1 1 0 1 0 0 1 0 0 0 0 2 0 0 12 1 1204.6677 P62266 P62266 108 119 RPS23 40S ribosomal protein S23 yes yes 3 0.016694 63.944 By matching By MS/MS By MS/MS 8.3 1.35 1 2 3 1 3 1 3 6 67327000 232470 11766000 55328000 6920 1013 7211 29545;29546;29547;29548;29549;29550;29551;29552;29553;29554 25031;25032;25033;25034;25035 25032 5 423520 5896700 26802000 KGHILELLTEVTR GSCFIQTLVDVFTKRKGHILELLTEVTRRM KRKGHILELLTEVTRRMAEAELVQEGKARK R K G T R R 0 1 0 0 0 0 2 1 1 1 3 1 0 0 0 0 2 0 0 1 0 0 13 1 1507.8722 P31944 P31944 199 211 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 3 0.016347 60.901 By MS/MS 9 0 1 1 2991400 2991400 0 0 6921 723 7212 29555 25036 25036 1 1679100 0 0 KGIDYDFPSLILQK RFKKKERLLRKKLAKKGIDYDFPSLILQKT KKGIDYDFPSLILQKTESISKTNRQTSTKG K K G Q K T 0 0 0 2 0 1 0 1 0 2 2 2 0 1 1 1 0 0 1 0 0 0 14 1 1635.8872 Q9BYG3 Q9BYG3 179 192 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 0.001268 114.9 By matching By MS/MS 6 0 2 1 1 12517000 0 1219800 11297000 6922 1936 7213 29556;29557 25037 25037 1 0 422240 1690100 KGISLNPEQWSQLK REYWMDPEGEMKPGRKGISLNPEQWSQLKE RKGISLNPEQWSQLKEQISDIDDAVRKL__ R K G L K E 0 0 1 0 0 2 1 1 0 1 2 2 0 0 1 2 0 1 0 0 0 0 14 1 1626.873 P53999 P53999 101 114 SUB1 Activated RNA polymerase II transcriptional coactivator p15 yes yes 2;3 8.7168E-107 267.43 By MS/MS By MS/MS 8 0 4 2 2 76152000 0 18728000 57423000 6923 926 7214 29558;29559;29560;29561 25038;25039;25040;25041 25040 4 0 8520800 8803500 KGLSEDVSISK APHLAREFMIKTRRRKGLSEDVSISKFFDD TRRRKGLSEDVSISKFFDDPMLLELAKQDV R K G S K F 0 0 0 1 0 0 1 1 0 1 1 2 0 0 0 3 0 0 0 1 0 0 11 1 1161.6241 Q15029 Q15029 941 951 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 1.7083E-19 194.17 By MS/MS 2 0 1 1 6819000 0 0 6819000 6924 1335 7215 29562 25042 25042 1 0 0 1541000 KGLTPSQIGVILR LTSDDVKEQIYKLAKKGLTPSQIGVILRDS AKKGLTPSQIGVILRDSHGVAQVRFVTGNK K K G L R D 0 1 0 0 0 1 0 2 0 2 2 1 0 0 1 1 1 0 0 1 0 0 13 1 1380.8453 P62277 P62277 43 55 RPS13 40S ribosomal protein S13 yes yes 2;3 9.4259E-34 211.84 By MS/MS By MS/MS 7.45 1.08 2 4 4 1 7 4 166700000 0 78040000 88661000 6925 1016 7216 29563;29564;29565;29566;29567;29568;29569;29570;29571;29572;29573 25043;25044;25045;25046;25047;25048;25049;25050;25051;25052;25053;25054;25055;25056 25054 14 0 38262000 14307000 KGLVDRPLALR DPFSGSQIPLFQAMKKGLVDRPLALRLLDA QAMKKGLVDRPLALRLLDAQLATGGLVCPA K K G L R L 1 2 0 1 0 0 0 1 0 0 3 1 0 0 1 0 0 0 0 1 0 0 11 2 1236.7666 P58107 P58107 383 393 EPPK1 Epiplakin yes yes 3 0.039779 60.641 By MS/MS 1 0 1 1 2910000 0 2910000 0 6926 958 7217 29574 25057 25057 1 0 1422400 0 KGLVGPELHDR DPVKGERLTVDEAVRKGLVGPELHDRLLSA EAVRKGLVGPELHDRLLSAERAVTGYRDPY R K G D R L 0 1 0 1 0 0 1 2 1 0 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1219.6673 Q15149 Q15149 3887 3897 PLEC Plectin yes yes 3 0.021535 66.498 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 14077000 0 4954000 9122900 6927 1348 7218 29575;29576;29577 25058;25059 25058 1 0 2421500 1981300 KGMLDPLEVHLLDFPNIVIK SLPVEEQPKQIIVTRKGMLDPLEVHLLDFP PLEVHLLDFPNIVIKGSELQLPFQACLKVE R K G I K G 0 0 1 2 0 0 1 1 1 2 4 2 1 1 2 0 0 0 0 2 0 0 20 1 2290.2759 Q6P2Q9 Q6P2Q9 1866 1885 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 2.8434E-06 93.572 By MS/MS 1.5 0.5 2 2 4 12768000 0 0 12768000 6928 1490 7219 29578;29579;29580;29581 25060;25061 25060 2 0 0 2762700 KGNFNYIEFTR DEEVDELYREAPIDKKGNFNYIEFTRILKH PIDKKGNFNYIEFTRILKHGAKDKDD____ K K G T R I 0 1 2 0 0 0 1 1 0 1 0 1 0 2 0 0 1 0 1 0 0 0 11 1 1387.6884 P19105;O14950 P19105 150 160 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B yes no 2 0.0015412 115.57 By MS/MS By matching 7 0 2 1 1 7854100 0 3086400 4767700 6929 154 7220 29582;29583 25062 25062 1 0 1772200 846000 KGPAPELQGVEVALAPEELELDPMAMTQK MGSTHIYDMSTVMSRKGPAPELQGVEVALA APEELELDPMAMTQKYEEHVREQQAQVEKE R K G Q K Y 4 0 0 1 0 2 5 2 0 0 4 2 2 0 4 0 1 0 0 2 0 0 29 1 3090.5617 Q13435 Q13435 815 843 SF3B2 Splicing factor 3B subunit 2 yes yes 3 3.03E-21 102.5 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 33142000 0 6621400 26521000 6930 1248 7221 29584;29585;29586 25063;25064 25064 2 0 2981700 5905200 KGPEPVPLEFIPAQGLLGR LELTAYEIFERDLKKKGPEPVPLEFIPAQG PVPLEFIPAQGLLGRPGELCAQHFTLS___ K K G G R P 1 1 0 0 0 1 2 3 0 1 3 1 0 1 4 0 0 0 0 1 0 0 19 1 2017.136 Q9BVI4 Q9BVI4 486 504 NOC4L Nucleolar complex protein 4 homolog yes yes 2;3 0.00012251 79.88 By MS/MS By MS/MS 4 0 2 1 1 9344800 0 4001300 5343500 6931 1914 7222 29587;29588 25065;25066 25065 2 0 1327900 872770 KGPGLAVQSGDK KGKRINVELSTKGQKKGPGLAVQSGDKTKK GQKKGPGLAVQSGDKTKKPGAGDTAFPGTG K K G D K T 1 0 0 1 0 1 0 3 0 0 1 2 0 0 1 1 0 0 0 1 0 0 12 1 1155.6248 Q96PK6 Q96PK6 153 164 RBM14 RNA-binding protein 14 yes yes 2 7.7294E-05 147.62 By MS/MS 3 0 1 1 11423000 0 0 11423000 6932 1818 7223 29589 25067 25067 1 0 0 2215500 KGPQSLFNAPR LPKGISAGAVQTAGKKGPQSLFNAPRGKKR TAGKKGPQSLFNAPRGKKRPAPGSDEEEEE K K G P R G 1 1 1 0 0 1 0 1 0 0 1 1 0 1 2 1 0 0 0 0 0 0 11 1 1213.6568 P46087 P46087 92 102 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2;3 0.0016139 92.611 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 32734000 0 5050000 27684000 6933 824 7224 29590;29591;29592;29593;29594 25068;25069;25070 25070 3 0 2274100 6170200 KGPSTVTDLEDTKR FPERESSILAKLKKKKGPSTVTDLEDTKRD KKGPSTVTDLEDTKRDRSVDVNGGPEPAPA K K G K R D 0 1 0 2 0 0 1 1 0 0 1 2 0 0 1 1 3 0 0 1 0 0 14 2 1545.7999 O94973 O94973 619 632 AP2A2 AP-2 complex subunit alpha-2 yes yes 3 0.0027186 82.925 By matching By MS/MS 1.5 0.5 1 1 1 1 4284000 0 1746100 2538000 6934 306 7225 29595;29596 25071 25071 1 0 853450 573530 KGSEHQAIVQHLEK SLHQDLVNRKARKLRKGSEHQAIVQHLEKS RKGSEHQAIVQHLEKSFAIASLVETGHLAA R K G E K S 1 0 0 0 0 2 2 1 2 1 1 2 0 0 0 1 0 0 0 1 0 0 14 1 1602.8478 Q14690 Q14690 924 937 PDCD11 Protein RRP5 homolog yes yes 3;4 0.0014368 83.633 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 9369000 0 3185100 6183900 6935 1314 7226 29597;29598;29599 25072;25073;25074 25073 3 0 1556800 1355900 KGTDDSMTLQSQK PGYRVKEIGSTMSGRKGTDDSMTLQSQKFQ GRKGTDDSMTLQSQKFQIGDYLDIAITPPN R K G Q K F 0 0 0 2 0 2 0 1 0 0 1 2 1 0 0 2 2 0 0 0 0 0 13 1 1437.677 O00422 O00422 114 126 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2;3 3.149E-57 228.61 By matching By matching By MS/MS 7 0.577 1 4 1 1 2 3 45922000 1614600 2807800 41499000 6936 120 7227 29600;29601;29602;29603;29604;29605 25075;25076 25076 2 2149800 1612300 7351500 KGTDIMYTGTLDCWR PFDTVRRRMMMQSGRKGTDIMYTGTLDCWR KGTDIMYTGTLDCWRKIARDEGGKAFFKGA R K G W R K 0 1 0 2 1 0 0 2 0 1 1 1 1 0 0 0 3 1 1 0 0 0 15 1 1815.8284 P05141 P05141 245 259 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 4.859E-25 202.61 By MS/MS 6 0 1 1 5796200 0 0 5796200 6937 427 7228 29606 25077 25077 1 0 0 867170 KGTDVNVFNTILTTR ADSDARALYEAGERRKGTDVNVFNTILTTR KGTDVNVFNTILTTRSYPQLRRVFQKYTKY R K G T R S 0 1 2 1 0 0 0 1 0 1 1 1 0 1 0 0 4 0 0 2 0 0 15 1 1677.905 P04083 P04083 214 228 ANXA1 Annexin A1 yes yes 3 5.8174E-05 134.25 By MS/MS 1 0 1 1 3625500 3625500 0 0 6938 410 7229 29607 25078 25078 1 3625500 0 0 KGTEVQVDDIKR AIQLITAASLVCRKRKGTEVQVDDIKRVYS RKRKGTEVQVDDIKRVYSLFLDESRSTQYM R K G K R V 0 1 0 2 0 1 1 1 0 1 0 2 0 0 0 0 1 0 0 2 0 0 12 2 1386.7467 Q9Y230 Q9Y230 417 428 RUVBL2 RuvB-like 2 yes yes 3 0.041445 58.313 By matching By MS/MS 4.5 0.5 1 1 1 1 4317300 0 325210 3992100 6939 2228 7230 29608;29609 25079 25079 1 0 107930 556830 KGTGIAAQTAGIAAAAR LAFASCGTEGFRNAKKGTGIAAQTAGIAAA TGIAAQTAGIAAAARAKQKGVIHIRVVVKG K K G A R A 7 1 0 0 0 1 0 3 0 2 0 1 0 0 0 0 2 0 0 0 0 0 17 1 1526.8529 P82912 P82912 122 138 MRPS11 28S ribosomal protein S11, mitochondrial yes yes 3 0.0098142 52.52 By MS/MS By matching 7.5 0.5 1 1 1 1 9539000 0 2126000 7412900 6940 1100 7231 29610;29611 25080 25080 1 0 1220800 1136500 KGTMTTGHNVADLVVILK FEVQIEEVRQVGSYKKGTMTTGHNVADLVV MTTGHNVADLVVILKILPTLEAVAALGNKV K K G L K I 1 0 1 1 0 0 0 2 1 1 2 2 1 0 0 0 3 0 0 3 0 0 18 1 1896.0503 Q12905 Q12905 110 127 ILF2 Interleukin enhancer-binding factor 2 yes yes 2;3 5.3788E-08 115.8 By MS/MS By MS/MS 5 0 3 1 2 36013000 0 11078000 24935000 6941 1210 7232 29612;29613;29614 25081;25082;25083 25082 3 0 2855500 3478000 KGTNYLADVFEK MMKENFPNFLSACDKKGTNYLADVFEKKDK CDKKGTNYLADVFEKKDKNEDKKIDFSEFL K K G E K K 1 0 1 1 0 0 1 1 0 0 1 2 0 1 0 0 1 0 1 1 0 0 12 1 1383.7034 P31151 P31151 50 61 S100A7 Protein S100-A7 yes yes 2 0.0025467 113.07 By MS/MS 9.5 0.5 1 1 2 6795900 6795900 0 0 6942 718 7233 29615;29616 25084 25084 1 4769200 0 0 KGTVEGFEPADNK ITLKKYDGRTKPIPKKGTVEGFEPADNKCL PKKGTVEGFEPADNKCLLRATDGKKKISTV K K G N K C 1 0 1 1 0 0 2 2 0 0 0 2 0 1 1 0 1 0 0 1 0 0 13 1 1390.6729 P37108 P37108 43 55 SRP14 Signal recognition particle 14 kDa protein yes yes 2;3 1.1007E-33 210.93 By matching By MS/MS By MS/MS 8.33 1.05 2 4 1 2 1 2 6 71025000 2139400 2758300 66128000 6943 766 7234 29617;29618;29619;29620;29621;29622;29623;29624;29625 25085;25086;25087;25088 25087 4 4611000 1255000 12468000 KGVAINFVK ELYIHRIGRSGRYGRKGVAINFVKNDDIRI SGRYGRKGVAINFVKNDDIRILRDIEQYYS R K G V K N 1 0 1 0 0 0 0 1 0 1 0 2 0 1 0 0 0 0 0 2 0 0 9 1 974.5913 P38919 P38919 374 382 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 3.7772E-11 171.38 By MS/MS By MS/MS 3.8 1.47 1 2 2 2 3 139710000 0 44654000 95060000 6944 775 7235 29626;29627;29628;29629;29630 25089;25090;25091;25092 25092 4 0 11673000 14061000 KGVAINMVTEEDKR ENYIHRIGRGGRFGRKGVAINMVTEEDKRT RKGVAINMVTEEDKRTLRDIETFYNTSIEE R K G K R T 1 1 1 1 0 0 2 1 0 1 0 2 1 0 0 0 1 0 0 2 0 0 14 2 1588.8243 P60842 P60842 369 382 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 3 0.0010554 94.728 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 111430000 0 15289000 96141000 6945 967 7236 29631;29632;29633 25093;25094 25093 2 0 3941100 13616000 KHALLEADVAAHQDR DDYGKDLTNVQNLQKKHALLEADVAAHQDR KHALLEADVAAHQDRIDGITIQARQFQDAG K K H D R I 4 1 0 2 0 1 1 0 2 0 2 1 0 0 0 0 0 0 0 1 0 0 15 1 1672.8645 Q13813 Q13813 719 733 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3;4 0.0010473 81.448 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 25355000 0 3437000 21918000 6946 1268 7237 29634;29635;29636;29637;29638 25095;25096;25097;25098 25096 4 0 1679900 4763300 KHEAFESDLAAHQDR DYETATLSDIKALIRKHEAFESDLAAHQDR KHEAFESDLAAHQDRVEQIAAIAQELNELD R K H D R V 3 1 0 2 0 1 2 0 2 0 1 1 0 1 0 1 0 0 0 0 0 0 15 1 1752.818 O43707;P12814;P35609 O43707 455 469 ACTN4;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2 no no 2;3;4 1.8535E-05 153.22 By MS/MS By MS/MS 1.71 0.452 2 5 2 5 96449000 0 22414000 74035000 6947 210;540 7238 29639;29640;29641;29642;29643;29644;29645 25099;25100;25101;25102;25103 25102 5 0 10093000 16644000 KHEAFETDFTVHK EDYGDTLAAIQGLLKKHEAFETDFTVHKDR LKKHEAFETDFTVHKDRVNDVCTNGQDLIK K K H H K D 1 0 0 1 0 0 2 0 2 0 0 2 0 2 0 0 2 0 0 1 0 0 13 1 1587.7682 Q13813 Q13813 1911 1923 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.0047764 75.911 By MS/MS 1.5 0.5 1 1 2 22242000 0 0 22242000 6948 1268 7239 29646;29647 25104;25105 25104 2 0 0 4819700 KHEAFETDFTVHKDR EDYGDTLAAIQGLLKKHEAFETDFTVHKDR KHEAFETDFTVHKDRVNDVCTNGQDLIKKN K K H D R V 1 1 0 2 0 0 2 0 2 0 0 2 0 2 0 0 2 0 0 1 0 0 15 2 1858.8962 Q13813 Q13813 1911 1925 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 7.1059E-05 123.76 By MS/MS 1 0 1 1 19837000 0 0 19837000 6949 1268 7240 29648 25106 25106 1 0 0 4274100 KHEAIETDIAAYEER DNFGFDLPAVEAATKKHEAIETDIAAYEER KHEAIETDIAAYEERVQAVVAVARELEAEN K K H E R V 3 1 0 1 0 0 4 0 1 2 0 1 0 0 0 0 1 0 1 0 0 0 15 1 1773.8533 Q01082 Q01082 463 477 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 4.7427E-05 161.21 By MS/MS 1 0 1 1 18350000 0 0 18350000 6950 1128 7241 29649 25107 25107 1 0 0 3953800 KHEALMSDLSAYGSSIQALR TDYGKDEDSAEALLKKHEALMSDLSAYGSS MSDLSAYGSSIQALREQAQSCRQQVAPTDD K K H L R E 3 1 0 1 0 1 1 1 1 1 3 1 1 0 0 4 0 0 1 0 0 0 20 1 2176.0947 Q13813 Q13813 931 950 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;4 7.4408E-121 268.93 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 22515000 0 5653500 16862000 6951 1268 7242 29650;29651;29652;29653 25108;25109;25110;25111 25111 4 0 2638600 3633100 KHGVVPLATYMR GKRRGTRYMFSRPFRKHGVVPLATYMRIYK PFRKHGVVPLATYMRIYKKGDIVDIKGMGT R K H M R I 1 1 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 0 1 2 0 0 12 1 1370.7493 P46778 P46778 21 32 RPL21 60S ribosomal protein L21 yes yes 3 0.0009314 102.4 By MS/MS 7 0 1 1 30442000 0 30442000 0 6952 829 7243 29654 25112 25112 1 0 17480000 0 KHHLQPENPGPGGAAPSLEQNR DSESSLQKRRRKKKKKHHLQPENPGPGGAA NPGPGGAAPSLEQNRGREPEASGLKALKAR K K H N R G 2 1 2 0 0 2 2 3 2 0 2 1 0 0 4 1 0 0 0 0 0 0 22 1 2333.1625 Q14684 Q14684 406 427 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 4 0.00095177 60.032 By MS/MS 2 0 1 1 2198900 0 0 2198900 6953 1313 7244 29655 25113 25113 1 0 0 496920 KHIMGQNVADYMR GYDSESKEFNAEVHRKHIMGQNVADYMRYL HRKHIMGQNVADYMRYLMEEDEDAYKKQFS R K H M R Y 1 1 1 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 1 1 0 0 13 1 1561.7494 P46777 P46777 197 209 RPL5 60S ribosomal protein L5 yes yes 3 0.00018444 113.95 By MS/MS By matching 6 0 2 1 1 47022000 0 27785000 19237000 6954 828 7245 29656;29657 25114 25114 1 0 9618100 2878100 KHIQDLNWQR VHMIEHAQKELQKLRKHIQDLNWQRKNMQL LQKLRKHIQDLNWQRKNMQLTAGSKLREME R K H Q R K 0 1 1 1 0 2 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 10 1 1336.7 O75934 O75934 158 167 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 3 0.022551 60.167 By matching By MS/MS By MS/MS 7.43 1.59 1 1 2 1 1 1 1 1 5 41621000 1089600 8239600 32292000 6955 290 7246 29658;29659;29660;29661;29662;29663;29664 25115;25116 25115 2 872900 4731200 15533000 KHLEINPDHPIVETLR QALRDNSTMGYMMAKKHLEINPDHPIVETL HLEINPDHPIVETLRQKAEADKNDKAVKDL K K H L R Q 0 1 1 1 0 0 2 0 2 2 2 1 0 0 2 0 1 0 0 1 0 0 16 1 1910.0374 P08238 P08238 624 639 HSP90AB1 Heat shock protein HSP 90-beta yes yes 4 0.0032553 65.107 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 23924000 0 5480000 18444000 6956 469 7247 29665;29666 25117;25118 25117 2 0 2467700 3577200 KHLEINPDHSIIETLR QALRDNSTMGYMAAKKHLEINPDHSIIETL HLEINPDHSIIETLRQKAEADKNDKSVKDL K K H L R Q 0 1 1 1 0 0 2 0 2 3 2 1 0 0 1 1 1 0 0 0 0 0 16 1 1914.0323 P07900 P07900 632 647 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 4 0.052556 32.862 By matching By MS/MS 2.5 0.5 1 1 1 1 19087000 0 3677200 15409000 6957 466 7248 29667;29668 25119 25119 1 0 1655900 2988700 KHPDASVNFSEFSK SYAFFVQTCREEHKKKHPDASVNFSEFSKK KKHPDASVNFSEFSKKCSERWKTMSAKEKG K K H S K K 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P09429 P09429 30 43 HMGB1 High mobility group protein B1 yes yes 2;3 6.5658E-05 148.13 By MS/MS By MS/MS 7.22 1.4 4 2 1 1 1 2 7 673370000 0 19714000 653660000 6958 484 7249 29669;29670;29671;29672;29673;29674;29675;29676;29677 25120;25121;25122;25123;25124;25125 25121 6 0 6824500 107440000 KHPDASVNFSEFSKK SYAFFVQTCREEHKKKHPDASVNFSEFSKK KHPDASVNFSEFSKKCSERWKTMSAKEKGK K K H K K C 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P09429 P09429 30 44 HMGB1 High mobility group protein B1 yes yes 3;4 0.013626 61.495 By MS/MS By MS/MS 6 0 3 2 1 28003000 0 14765000 13238000 6959 484 7250 29678;29679;29680 25126;25127;25128 25127 3 0 5111300 1980500 KHPDSSVNFAEFSK SYAFFVQTCREEHKKKHPDSSVNFAEFSKK KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K K H S K K 1 0 1 1 0 0 1 0 1 0 0 2 0 2 1 3 0 0 0 1 0 0 14 1 1591.7631 P26583 P26583 30 43 HMGB2 High mobility group protein B2 yes yes 2;3 0.00050312 129.37 By MS/MS By MS/MS 6.5 0.5 3 3 2 4 908080000 0 43877000 864200000 6960 670 7251 29681;29682;29683;29684;29685;29686 25129;25130;25131;25132;25133;25134;25135 25132 7 0 22488000 142510000 KHPDSSVNFAEFSKK SYAFFVQTCREEHKKKHPDSSVNFAEFSKK KHPDSSVNFAEFSKKCSERWKTMSAKEKSK K K H K K C 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P26583 P26583 30 44 HMGB2 High mobility group protein B2 yes yes 3 0.0011168 86.497 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 48615000 0 8789900 39825000 6961 670 7252 29687;29688;29689;29690 25136;25137;25138 25138 3 0 4351600 6558400 KHQALQAEIAGHEPR TNRGKDLIGVQNLLKKHQALQAEIAGHEPR KHQALQAEIAGHEPRIKAVTQKGNAMVEEG K K H P R I 3 1 0 0 0 2 2 1 2 1 1 1 0 0 1 0 0 0 0 0 0 0 15 1 1683.8805 Q13813 Q13813 825 839 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3;4 0.00053894 87.519 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 81047000 0 19837000 61209000 6962 1268 7253 29691;29692;29693;29694;29695 25139;25140;25141;25142;25143;25144;25145 25144 7 0 9565100 13244000 KHQLLEADISAHEDR EDYGKDLASVNNLLKKHQLLEADISAHEDR KHQLLEADISAHEDRLKDLNSQADSLMTSS K K H D R L 2 1 0 2 0 1 2 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 15 1 1760.8806 Q13813 Q13813 1699 1713 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 0.0028401 70.529 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 36115000 0 3069500 33046000 6963 1268 7254 29696;29697;29698 25146;25147;25148 25147 3 0 1500300 7180800 KIAELEEEQSQGSTTNSDWMK IGDDNLPGINSMLQRKIAELEEEQSQGSTT EEQSQGSTTNSDWMKNLISPDLGVVFLNVP R K I M K N 1 0 1 1 0 2 4 1 0 1 1 2 1 0 0 3 2 1 0 0 0 0 21 1 2410.0958 P46821 P46821 327 347 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.0011033 60.747 By MS/MS 1 0 1 1 6022000 0 0 6022000 6964 834 7255 29699 25149 25149 1 0 0 1297500 KIAFAITAIK QHILRVLNTNIDGRRKIAFAITAIKGVGRR IDGRRKIAFAITAIKGVGRRYAHVVLRKAD R K I I K G 3 0 0 0 0 0 0 0 0 3 0 2 0 1 0 0 1 0 0 0 0 0 10 1 1074.6801 P62269 P62269 25 34 RPS18 40S ribosomal protein S18 yes yes 2 0.0018878 110.38 By MS/MS By MS/MS 8 0 2 1 1 289320000 0 177850000 111460000 6965 1014 7256 29700;29701 25150;25151 25150 2 0 80917000 17088000 KIDGAEPLTPEETEEKEK PDIPNPALAQREEQKKIDGAEPLTPEETEE GAEPLTPEETEEKEKLLTQGFTNWTKRDFN K K I E K L 1 0 0 1 0 0 6 1 0 1 1 3 0 0 2 0 2 0 0 0 0 0 18 2 2042.0055 P28370 P28370 834 851 SMARCA1 Probable global transcription activator SNF2L1 yes yes 3;4 3.4956E-07 110.26 By matching By MS/MS By MS/MS 1.5 0.5 3 3 1 1 4 62229000 14389000 8565600 39274000 6966 693 7257 29702;29703;29704;29705;29706;29707 25152;25153;25154;25155 25153 4 14389000 3857200 8743400 KIDKYTEVLK QLMRLRKQAEKNVEKKIDKYTEVLKTHGLL KNVEKKIDKYTEVLKTHGLLV_________ K K I L K T 0 0 0 1 0 0 1 0 0 1 1 3 0 0 0 0 1 0 1 1 0 0 10 2 1235.7125 P40429 P40429 188 197 RPL13A 60S ribosomal protein L13a yes yes 2;3 0.0001136 145.99 By MS/MS By matching 6.67 0.471 2 4 4 2 133100000 0 109070000 24033000 6967 784 7258 29708;29709;29710;29711;29712;29713 25156;25157;25158 25158 3 0 60834000 4264400 KIEDLGAAMEEALILDNK KRKHQEIRAMRSQLKKIEDLGAAMEEALIL DLGAAMEEALILDNKYTEHSTVGLAQQWDQ K K I N K Y 3 0 1 2 0 0 3 1 0 2 3 2 1 0 0 0 0 0 0 0 0 0 18 1 1972.0187 Q13813 Q13813 2264 2281 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 4.7576E-09 117.27 By MS/MS 1.5 0.5 1 1 2 14483000 0 0 14483000 6968 1268 7259 29714;29715 25159 25159 1 0 0 3166400 KIEDLTELEGWEELEDNEKEQITQHIADLSSK KCMFEKLERARATTKKIEDLTELEGWEELE EKEQITQHIADLSSKAAGTPKKKAVVQAKL K K I S K A 1 0 1 3 0 2 8 1 1 3 4 3 0 0 0 2 2 1 0 0 0 0 32 2 3768.8218 P49916 P49916 156 187 LIG3 DNA ligase 3 yes yes 4 2.5245E-41 127.67 By MS/MS 2 0 1 1 14291000 0 0 14291000 6969 874 7260 29716 25160 25160 1 0 0 3229400 KIEEIKDFLLTAR ______________________________ PRKIEEIKDFLLTARRKDAKSVKIKKNKDN R K I A R R 1 1 0 1 0 0 2 0 0 2 2 2 0 1 0 0 1 0 0 0 0 0 13 2 1574.9032 P63173 P63173 4 16 RPL38 60S ribosomal protein L38 yes yes 2;3 0.0032101 160.72 By MS/MS By MS/MS 9 0.816 1 1 1 2 1 32231000 0 6580800 25650000 6970 1064 7261 29717;29718;29719 25161;25162 25162 2 0 24792000 8193600 KIEFLRPGYK KKMKKHKNKSEAKKRKIEFLRPGYKAKRQK EAKKRKIEFLRPGYKAKRQKSHSLKDLAMV R K I Y K A 0 1 0 0 0 0 1 1 0 1 1 2 0 1 1 0 0 0 1 0 0 0 10 2 1249.7183 O75691 O75691 2760 2769 UTP20 Small subunit processome component 20 homolog yes yes 3 0.017514 60.064 By MS/MS 1 0 1 1 3005400 0 3005400 0 6971 280 7262 29720 25163 25163 0 0 1469000 0 KIENLQEQLR DMLDVKERKVNVLQKKIENLQEQLRDKEKQ NVLQKKIENLQEQLRDKEKQMSSLKERVKS K K I L R D 0 1 1 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1269.7041 Q8IUD2;O15083 Q8IUD2 579 588 ERC1;ERC2 ELKS/Rab6-interacting/CAST family member 1;ERC protein 2 yes no 2 0.043557 80.231 By matching By MS/MS 2 0 2 1 1 5751200 2166300 0 3584900 6972 1565 7263 29721;29722 25164 25164 1 2610100 0 810120 KIEQELTAAK DTEEMLSKKQEFLEKKIEQELTAAKKHGTK EFLEKKIEQELTAAKKHGTKNKRAALQALK K K I A K K 2 0 0 0 0 1 2 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 10 1 1129.6343 Q9H444 Q9H444 46 55 CHMP4B Charged multivesicular body protein 4b yes yes 2 0.0001861 145.99 By MS/MS By MS/MS 6.8 0.748 2 2 1 2 3 68496000 0 32903000 35593000 6973 1981 7264 29723;29724;29725;29726;29727 25165;25166 25165 2 0 11669000 5366700 KIEQELTAAKK DTEEMLSKKQEFLEKKIEQELTAAKKHGTK FLEKKIEQELTAAKKHGTKNKRAALQALKR K K I K K H 2 0 0 0 0 1 2 0 0 1 1 3 0 0 0 0 1 0 0 0 0 0 11 2 1257.7293 Q9H444 Q9H444 46 56 CHMP4B Charged multivesicular body protein 4b yes yes 3 0.06031 53.569 By MS/MS 6 0 1 1 1572900 0 1572900 0 6974 1981 7265 29728 25167 25167 1 0 544490 0 KIEQVDKEDEITEK DPSGDSTLPTCSKKRKIEQVDKEDEITEKK RKIEQVDKEDEITEKKAKKAKIKVKVEEEE R K I E K K 0 0 0 2 0 1 4 0 0 2 0 3 0 0 0 0 1 0 0 1 0 0 14 2 1702.8625 Q9Y2X3 Q9Y2X3 444 457 NOP58 Nucleolar protein 58 yes yes 2;3 0.0030299 153.38 By MS/MS By MS/MS 4.5 1.96 1 2 3 1 1 1 1 3 7 86990000 0 5453400 81537000 6975 2254 7266 29729;29730;29731;29732;29733;29734;29735;29736;29737;29738 25168;25169;25170;25171;25172 25172 5 0 1900200 13833000 KIETFLNHYPVESSWIAPELR QRRPCTIQVPEPILRKIETFLNHYPVESSW NHYPVESSWIAPELRLQSDDILPLGKDSGP R K I L R L 1 1 1 0 0 0 3 0 1 2 2 1 0 1 2 2 1 1 1 1 0 0 21 1 2528.3064 Q7L2E3 Q7L2E3 357 377 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3;4 4.3211E-08 102.45 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 28332000 0 5511700 22821000 6976 1522 7267 29739;29740;29741;29742;29743 25173;25174;25175 25175 3 0 2482000 5070000 KIFVGGIKEDTEEYNLR SREDSVKPGAHLTVKKIFVGGIKEDTEEYN FVGGIKEDTEEYNLRDYFEKYGKIETIEVM K K I L R D 0 1 1 1 0 0 3 2 0 2 1 2 0 1 0 0 1 0 1 1 0 0 17 2 2010.0422 P51991 P51991 127 143 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 4 0.058889 35.329 By MS/MS By MS/MS 5 0.632 1 3 1 1 4 45981000 0 2759200 43221000 6977 900 7268 29744;29745;29746;29747;29748 25176;25177;25178 25178 3 0 711250 6105900 KIGDTSVSYK TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY WEMIRKIGDTSVSYKYTSRYVLKAGQTVTI R K I Y K Y 0 0 0 1 0 0 0 1 0 1 0 2 0 0 0 2 1 0 1 1 0 0 10 1 1096.5764 P20700 P20700 474 483 LMNB1 Lamin-B1 yes yes 2 0.0013924 113.44 By MS/MS By matching 3.5 0.5 1 1 1 1 29490000 0 28947000 542960 6978 619 7269 29749;29750 25179 25179 1 0 12340000 88683 KIHPQTIIAGWR LAAELLREAESLIAKKIHPQTIIAGWREAT IAKKIHPQTIIAGWREATKAAREALLSSAV K K I W R E 1 1 0 0 0 1 0 1 1 3 0 1 0 0 1 0 1 1 0 0 0 0 12 1 1418.8147 P78371 P78371 120 131 CCT2 T-complex protein 1 subunit beta yes yes 3 0.018543 62.338 By MS/MS By MS/MS 4 0 2 1 1 10782000 0 4050900 6731200 6979 1086 7270 29751;29752 25180;25181 25180 2 0 1344400 1099400 KILDSVGIEADDDRLNK AALGGNSSPSAKDIKKILDSVGIEADDDRL LDSVGIEADDDRLNKVISELNGKNIEDVIA K K I N K V 1 1 1 4 0 0 1 1 0 2 2 2 0 0 0 1 0 0 0 1 0 0 17 2 1899.9902 P05387 P05387 25 41 RPLP2 60S acidic ribosomal protein P2 yes yes 2;3 6.4773E-90 249.32 By MS/MS By MS/MS 8 1.07 1 1 2 3 1 6 120750000 0 4495700 116250000 6980 431 7271 29753;29754;29755;29756;29757;29758;29759 25182;25183;25184;25185;25186 25186 5 0 3599900 29543000 KIMQTDEEIGK KKKKYNARFPPARIKKIMQTDEEIGKVAAA ARIKKIMQTDEEIGKVAAAVPVIISRALEL K K I G K V 0 0 0 1 0 1 2 1 0 2 0 2 1 0 0 0 1 0 0 0 0 0 11 1 1290.649 Q14919 Q14919 19 29 DRAP1 Dr1-associated corepressor yes yes 2 0.016397 92.428 By MS/MS 7 0 1 1 7003900 0 0 7003900 6981 1323 7272 29760 25187 25187 1 0 0 1242800 KIMSSPLSK KNRKRHFNAPSHIRRKIMSSPLSKELRQKY PSHIRRKIMSSPLSKELRQKYNVRSMPIRK R K I S K E 0 0 0 0 0 0 0 0 0 1 1 2 1 0 1 3 0 0 0 0 0 0 9 1 989.55795 P61254;Q9UNX3 P61254 28 36 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0040511 104.48 By MS/MS By matching 7 0 2 1 1 97378000 0 43909000 53469000 6982 989 7273 29761;29762 25188 25188 1 0 25213000 9487800 KINDYVEK EAFSINFRDAEEAKKKINDYVEKGSHGKIV DAEEAKKKINDYVEKGSHGKIVELVKVLDP K K I E K G 0 0 1 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 1 0 0 8 1 1007.5288 CON__P34955 CON__P34955 178 185 yes yes 2 0.00019389 146.23 By MS/MS 3.5 1.71 1 1 1 1 1 1 6 9507800 9507800 0 0 + 6983 64 7274 29763;29764;29765;29766;29767;29768 25189 25189 1 8336400 0 0 KIPLVPENLLK ISSCTTRKMAEQEQRKIPLVPENLLKKRKA QEQRKIPLVPENLLKKRKAYQALKATQAKQ R K I L K K 0 0 1 0 0 0 1 0 0 1 3 2 0 0 2 0 0 0 0 1 0 0 11 1 1262.7962 Q6DKI1 Q6DKI1 17 27 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2 0.053002 78.516 By matching By MS/MS 6.33 0.471 2 1 1 2 57808000 0 12037000 45771000 6984 1471 7275 29769;29770;29771 25190 25190 1 0 4166700 7116300 KIQEILTQVK VKITGHFYACQVAQRKIQEILTQVKQHQQQ QVAQRKIQEILTQVKQHQQQKALQSGPPQS R K I V K Q 0 0 0 0 0 2 1 0 0 2 1 2 0 0 0 0 1 0 0 1 0 0 10 1 1198.7285 O00425 O00425 552 561 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 5.38E-07 160.33 By MS/MS By matching 5 2 2 2 3 1 39583000 0 37992000 1590900 6985 121 7276 29772;29773;29774;29775 25191;25192;25193 25191 3 0 16602000 282300 KIQELFHVEPGLQR VDSLSRLTKVEELRRKIQELFHVEPGLQRL RKIQELFHVEPGLQRLFYRGKQMEDGHTLF R K I Q R L 0 1 0 0 0 2 2 1 1 1 2 1 0 1 1 0 0 0 0 1 0 0 14 1 1692.9311 Q96T88 Q96T88 31 44 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 3 0.00093016 87.932 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 40236000 0 11531000 28705000 6986 1841 7277 29776;29777;29778 25194;25195 25194 2 0 5192400 6395200 KISLEDIQAFEK TQDRDWEAYWRLLFKKISLEDIQAFEKTYK LFKKISLEDIQAFEKTYKGSEEELADIKQA K K I E K T 1 0 0 1 0 1 2 0 0 2 1 2 0 1 0 1 0 0 0 0 0 0 12 1 1419.7609 Q8WXX5 Q8WXX5 107 118 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.014348 97.175 By MS/MS 6 0 1 1 11744000 0 0 11744000 6987 1698 7278 29779 25196 25196 1 0 0 1757000 KISSIQSIVPALEIANAHR QKCEFQDAYVLLSEKKISSIQSIVPALEIA IQSIVPALEIANAHRKPLVIIAEDVDGEAL K K I H R K 3 1 1 0 0 1 1 0 1 4 1 1 0 0 1 3 0 0 0 1 0 0 19 1 2046.1586 P10809 P10809 250 268 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 4 0.00011468 80.316 By MS/MS 4 0 1 1 5198500 0 5198500 0 6988 515 7279 29780 25197 25197 1 0 1725200 0 KITIADCGQLE EAMERFGSRNGKTSKKITIADCGQLE____ KTSKKITIADCGQLE_______________ K K I L E - 1 0 0 1 1 1 1 1 0 2 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1246.6227 P62937 P62937 155 165 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 0.011358 98.048 By MS/MS 8 0 1 1 12102000 12102000 0 0 6989 1053 7280 29781 25198 25198 1 10390000 0 0 KIVDQIRPDR EADRMLDMGFEPQIRKIVDQIRPDRQTLMW EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ R K I D R Q 0 2 0 2 0 1 0 0 0 2 0 1 0 0 1 0 0 0 0 1 0 0 10 2 1238.7095 Q92841;P17844 P17844 264 273 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 3 0.0065447 82.417 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 350500000 0 134860000 215640000 6990 588;1725 7281 29782;29783;29784;29785;29786;29787;29788;29789 25199;25200;25201;25202;25203;25204;25205;25206 25201 7 0 52514000 41916000 KIVLATNIAETSITINDIVHVVDSGLHK MDQKAIFQQPPVGVRKIVLATNIAETSITI TINDIVHVVDSGLHKEERYDLKTKVSCLET R K I H K E 2 0 2 2 0 0 1 1 2 5 2 2 0 0 0 2 3 0 0 4 0 0 28 1 2999.6655 Q7L2E3 Q7L2E3 726 753 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 4 4.8602E-15 93.147 By MS/MS 2 0 1 1 2794100 0 0 2794100 6991 1522 7282 29790 25207 25207 1 0 0 631420 KIYQDAYR RRIAQRWRELPDSKKKIYQDAYRAEWQVYK ELPDSKKKIYQDAYRAEWQVYKEEISRFKE K K I Y R A 1 1 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 8 1 1055.54 Q00059 Q00059 97 104 TFAM Transcription factor A, mitochondrial yes yes 2 0.0066014 103.91 By MS/MS By MS/MS 7 0 2 1 1 23689000 0 5202800 18487000 6992 1120 7283 29791;29792 25208;25209 25208 2 0 2987500 3280300 KKAEPSEVDMNSPK AEEEETVFPKAKQVKKKAEPSEVDMNSPKS KKKAEPSEVDMNSPKSKKAKKKEEPSQNDI K K K P K S 1 0 1 1 0 0 2 0 0 0 0 3 1 0 2 2 0 0 0 1 0 0 14 2 1558.7661 Q9NR30 Q9NR30 60 73 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.021534 60.55 By MS/MS 2 0 1 1 4183300 0 4183300 0 6993 2038 7284 29793 25210 25210 1 0 1883800 0 KKDQVTAQEIFQDNHEDGPTAK PLSKIKTLFPLIEAKKKDQVTAQEIFQDNH QEIFQDNHEDGPTAKKLKTEQGGAHFSVSS K K K A K K 2 0 1 3 0 3 2 1 1 1 0 3 0 1 1 0 2 0 0 1 0 0 22 2 2498.2037 P13010 P13010 544 565 XRCC5 X-ray repair cross-complementing protein 5 yes yes 4 1.9254E-10 99.603 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 76496000 0 27823000 48673000 6994 542 7285 29794;29795;29796;29797 25211;25212;25213;25214 25212 4 0 12201000 10011000 KKDYEVELLR SQKEKDAYHKKCDQKKKDYEVELLRFLESL KCDQKKKDYEVELLRFLESLPEEEQQRVLG K K K L R F 0 1 0 1 0 0 2 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 10 2 1291.7136 P17480 P17480 351 360 UBTF Nucleolar transcription factor 1 yes yes 3 0.019715 69.346 By MS/MS By matching 2.5 0.5 1 1 1 1 30962000 0 9494000 21468000 6995 584 7286 29798;29799 25215 25215 1 0 4275300 4163900 KKEEPSQNDISPK PSEVDMNSPKSKKAKKKEEPSQNDISPKTK AKKKEEPSQNDISPKTKSLRKKKEPIEKKV K K K P K T 0 0 1 1 0 1 2 0 0 1 0 3 0 0 2 2 0 0 0 0 0 0 13 2 1498.7627 Q9NR30 Q9NR30 79 91 DDX21 Nucleolar RNA helicase 2 yes yes 3 0.043055 55.196 By matching By MS/MS 2 0.816 1 1 1 2 1 6133100 0 3939000 2194100 6996 2038 7287 29800;29801;29802 25216 25216 1 0 1779800 425550 KKEIEELQSQAQALSQEGK LLKKQQMLENQMEVRKKEIEELQSQAQALS EELQSQAQALSQEGKSTDEVDSKRLTVQTK R K K G K S 2 0 0 0 0 4 4 1 0 1 2 3 0 0 0 2 0 0 0 0 0 0 19 2 2143.1121 Q01082 Q01082 1433 1451 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 4 0.067155 28.044 By MS/MS 1 0 1 1 4799100 0 4799100 0 6997 1128 7288 29803 25217 25217 0 0 2345800 0 KKELEEIVQPIISK LESHQDADIEDFKAKKKELEEIVQPIISKL KKKELEEIVQPIISKLYGSAGPPPTGEEDT K K K S K L 0 0 0 0 0 1 3 0 0 3 1 3 0 0 1 1 0 0 0 1 0 0 14 2 1652.9713 P11021 P11021 620 633 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.03508 54.7 By MS/MS 3 0 1 1 5070200 0 5070200 0 6998 516 7289 29804 25218 25218 1 0 2161400 0 KKHPDASVNFSEFSK SSYAFFVQTCREEHKKKHPDASVNFSEFSK KKHPDASVNFSEFSKKCSERWKTMSAKEKG K K K S K K 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P09429 P09429 29 43 HMGB1 High mobility group protein B1 yes yes 3 0.0033078 75.911 By matching By MS/MS 6.67 0.471 1 2 1 2 45816000 0 3734600 42081000 6999 484 7290 29805;29806;29807 25219;25220 25219 2 0 2144400 6690200 KKHPDSSVNFAEFSK SSYAFFVQTCREEHKKKHPDSSVNFAEFSK KKHPDSSVNFAEFSKKCSERWKTMSAKEKS K K K S K K 1 0 1 1 0 0 1 0 1 0 0 3 0 2 1 3 0 0 0 1 0 0 15 2 1719.858 P26583 P26583 29 43 HMGB2 High mobility group protein B2 yes yes 2 4.7133E-07 85.554 By MS/MS 7 0 1 1 0 0 0 0 7000 670 7291 29808 25221 25221 1 0 0 0 KKLDAQVQELHAK VKVLQQVKAESEHKRKKLDAQVQELHAKVS KRKKLDAQVQELHAKVSEGDRLRVELAEKA R K K A K V 2 0 0 1 0 2 1 0 1 0 2 3 0 0 0 0 0 0 0 1 0 0 13 2 1506.8518 P35580 P35580 1255 1267 MYH10 Myosin-10 yes yes 3 0.046508 54.199 By MS/MS 1 0 1 1 9706700 0 9706700 0 7001 753 7292 29809 25222 25222 1 0 4744500 0 KKPLDGEYFTLQIR KRALPNNTSSSPQPKKKPLDGEYFTLQIRG KKKPLDGEYFTLQIRGRERFEMFRELNEAL K K K I R G 0 1 0 1 0 1 1 1 0 1 2 2 0 1 1 0 1 0 1 0 0 0 14 2 1706.9356 P04637 P04637 320 333 TP53 Cellular tumor antigen p53 yes yes 2;3;4 5.1688E-15 186.87 By MS/MS By MS/MS 4.31 1.54 1 1 1 3 5 1 1 2 11 138440000 0 20751000 117690000 7002 416 7293 29810;29811;29812;29813;29814;29815;29816;29817;29818;29819;29820;29821;29822 25223;25224;25225;25226;25227 25226 5 0 5348900 18143000 KKPNPVEEEPSR ASGDEGIKVLKQRAKKKPNPVEEEPSRRRP RAKKKPNPVEEEPSRRRPRAPKEKAQPLED K K K S R R 0 1 1 0 0 0 3 0 0 0 0 2 0 0 3 1 0 0 0 1 0 0 12 2 1408.731 P46013 P46013 2652 2663 MKI67 Antigen KI-67 yes yes 3 0.042498 57.802 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 4658900 0 2002200 2656700 7003 821 7294 29823;29824 25228;25229 25229 2 0 901620 515280 KKQDLYMWLSNSPHGPSAK CEMKNCNKCIYFEAKKKQDLYMWLSNSPHG LYMWLSNSPHGPSAKFLVQNIHTLAELKMT K K K A K F 1 0 1 1 0 1 0 1 1 0 2 3 1 0 2 3 0 1 1 0 0 0 19 2 2186.0943 Q8TDN6 Q8TDN6 122 140 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3;4 0.0008182 68.625 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 26195000 0 17248000 8946900 7004 1663 7295 29825;29826;29827 25230;25231 25230 1 0 4668200 1247900 KKQEQLTPGVVYVR FQKEVAQVRKRITQRKKQEQLTPGVVYVRH RKKQEQLTPGVVYVRHLPNLLDETQIFSYF R K K V R H 0 1 0 0 0 2 1 1 0 0 1 2 0 0 1 0 1 0 1 3 0 0 14 2 1643.9359 Q9BYG3 Q9BYG3 37 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2;4 2.2877E-43 224.66 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 45995000 0 12052000 33944000 7005 1936 7296 29828;29829;29830;29831 25232;25233;25234 25233 3 0 4171800 5149400 KKVDDDLGTIESLEEAK EKQVLALQSQLADTKKKVDDDLGTIESLEE VDDDLGTIESLEEAKKKLLKDAEALSQRLE K K K A K K 1 0 0 3 0 0 3 1 0 1 2 3 0 0 0 1 1 0 0 1 0 0 17 2 1888.963 P35580 P35580 1378 1394 MYH10 Myosin-10 yes yes 3 0.00024949 94.882 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 28648000 0 11591000 17057000 7006 753 7297 29832;29833;29834 25235;25236 25235 2 0 5571600 3675200 KKVEAQLQELQVK VKVLLQGKGDSEHKRKKVEAQLQELQVKFN KRKKVEAQLQELQVKFNEGERVRTELADKV R K K V K F 1 0 0 0 0 3 2 0 0 0 2 3 0 0 0 0 0 0 0 2 0 0 13 2 1539.8984 P35579 P35579 1248 1260 MYH9 Myosin-9 yes yes 2;3 2.9181E-145 284.15 By MS/MS By MS/MS 1.29 0.452 5 2 4 3 489250000 0 374670000 114590000 7007 752 7298 29835;29836;29837;29838;29839;29840;29841 25237;25238;25239;25240;25241;25242 25239 6 0 182450000 24824000 KKVPVSVNLLSK RRLLPSLIGRHFYQRKKVPVSVNLLSKNLS YQRKKVPVSVNLLSKNLSREINDCIGGTVL R K K S K N 0 0 1 0 0 0 0 0 0 0 2 3 0 0 1 2 0 0 0 3 0 0 12 2 1310.8286 O76021 O76021 177 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 3 0.001311 104.94 By MS/MS 5.5 1.12 1 1 1 1 4 66694000 0 66694000 0 7008 295 7299 29842;29843;29844;29845 25243 25243 1 0 22153000 0 KLAEEEDLFDSAHPEEGDLDLASESTAHAQSSK EQPFAQDTSSVGPDRKLAEEEDLFDSAHPE LDLASESTAHAQSSKADSLLAVVKREPAEQ R K L S K A 5 0 0 4 0 1 6 1 2 0 4 2 0 1 1 5 1 0 0 0 0 0 33 1 3555.6125 Q14151;Q15424 Q15424 253 285 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 4 2.2687E-54 163.55 By MS/MS 2 0 1 1 66483000 0 0 66483000 7009 1364;1285 7300 29846 25244 25244 1 0 0 15024000 KLALQLHPDRNPDDPQAQEK VPRSASIKDIKKAYRKLALQLHPDRNPDDP LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE R K L E K F 2 1 1 3 0 3 1 0 1 0 3 2 0 0 3 0 0 0 0 0 0 0 20 2 2312.1873 Q9UBS4 Q9UBS4 47 66 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 4 0.0028092 56.719 By MS/MS 5 0 1 1 20977000 0 0 20977000 7010 2134 7301 29847 25245 25245 1 0 0 2925900 KLASQGDSISSQLGPIHPPPR GQKRQLEDGDQPESKKLASQGDSISSQLGP DSISSQLGPIHPPPRTSMTEEYRVPDGMVG K K L P R T 1 1 0 1 0 2 0 2 1 2 2 1 0 0 4 4 0 0 0 0 0 0 21 1 2184.1651 Q92945 Q92945 122 142 KHSRP Far upstream element-binding protein 2 yes yes 4 0.0019264 55.745 By MS/MS By matching 2.5 0.5 1 1 1 1 22987000 0 14077000 8909600 7011 1733 7302 29848;29849 25246 25246 1 0 6339100 1728000 KLAVNMVPFPR TTCLRFPGQLNADLRKLAVNMVPFPRLHFF ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG R K L P R L 1 1 1 0 0 0 0 0 0 0 1 1 1 1 2 0 0 0 0 2 0 0 11 1 1270.722 P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;P04350;Q13509;Q3ZCM7;Q9BUF5 P68371 252 262 TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 2;3 1.3631E-74 248.99 By MS/MS By MS/MS 4.39 1.31 1 1 2 8 7 3 1 11 12 741200000 0 204540000 536670000 7012 1079;462;1274;414;1254;1905;1415 7303;7304 29850;29851;29852;29853;29854;29855;29856;29857;29858;29859;29860;29861;29862;29863;29864;29865;29866;29867;29868;29869;29870;29871;29872 25247;25248;25249;25250;25251;25252;25253;25254;25255;25256;25257;25258;25259;25260;25261;25262;25263;25264;25265;25266;25267;25268 25249 144 22 0 59841000 81797000 KLDAGNQLALIEELHK VVLEESWDALNAITKKLDAGNQLALIEELH LDAGNQLALIEELHKEIRLIGNESKGEHVP K K L H K E 2 0 1 1 0 1 2 1 1 1 4 2 0 0 0 0 0 0 0 0 0 0 16 1 1790.989 Q92616 Q92616 2222 2237 GCN1L1 Translational activator GCN1 yes yes 3 0.0049724 61.167 By MS/MS 1 0 1 1 4571700 0 0 4571700 7013 1712 7305 29873 25269 25269 1 0 0 985050 KLDAQVQELHAK KVLQQVKAESEHKRKKLDAQVQELHAKVSE KRKKLDAQVQELHAKVSEGDRLRVELAEKA K K L A K V 2 0 0 1 0 2 1 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1378.7569 P35580 P35580 1256 1267 MYH10 Myosin-10 yes yes 3 0.0036289 84.169 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 77978000 0 46572000 31406000 7014 753 7306 29874;29875;29876;29877 25270;25271 25271 2 0 22580000 6767000 KLDEAVAEAHLGK THPDKYPVGVHFLPKKLDEAVAEAHLGKLN PKKLDEAVAEAHLGKLNVKLTKLTEKQAQY K K L G K L 3 0 0 1 0 0 2 1 1 0 2 2 0 0 0 0 0 0 0 1 0 0 13 1 1379.7409 P23526 P23526 389 401 AHCY Adenosylhomocysteinase yes yes 3 0.024117 55.176 By MS/MS By MS/MS 5 0 2 1 1 27634000 0 3518500 24116000 7015 643 7307 29878;29879 25272;25273 25273 2 0 906970 3363700 KLDELYGTWR GHVGRFCIWTESAFRKLDELYGTWRKAASL ESAFRKLDELYGTWRKAASLKSNYNLPMHK R K L W R K 0 1 0 1 0 0 1 1 0 0 2 1 0 0 0 0 1 1 1 0 0 0 10 1 1279.6561 P36578 P36578 259 268 RPL4 60S ribosomal protein L4 yes yes 2;3 1.9338E-61 228.37 By matching By MS/MS By MS/MS 3.83 1.71 2 3 2 4 4 2 1 1 7 10 445440000 2327700 163570000 279540000 7016 762 7308 29880;29881;29882;29883;29884;29885;29886;29887;29888;29889;29890;29891;29892;29893;29894;29895;29896;29897 25274;25275;25276;25277;25278;25279;25280;25281;25282;25283;25284;25285;25286 25286 13 2804600 46994000 43532000 KLDEMTDRDWR KEAKQRWDDRHWSQKKLDEMTDRDWRIFRE WSQKKLDEMTDRDWRIFREDYSITTKGGKI K K L W R I 0 2 0 3 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 11 2 1463.6827 Q9BUQ8 Q9BUQ8 361 371 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3 0.00378 88.596 By MS/MS 2 0 1 1 12883000 0 0 12883000 7017 1909 7309 29898 25287 25287 1 0 0 2911300 KLDGETTDLQDQIAELQAQIDELK KKEEKTRQELEKAKRKLDGETTDLQDQIAE QDQIAELQAQIDELKLQLAKKEEELQGALA R K L L K L 2 0 0 4 0 4 3 1 0 2 4 2 0 0 0 0 2 0 0 0 0 0 24 1 2713.3658 P35580 P35580 1059 1082 MYH10 Myosin-10 yes yes 3 2.2655E-25 167.59 By MS/MS By MS/MS 1 0 2 1 1 14623000 0 1917000 12706000 7018 753 7310 29899;29900 25288;25289 25289 2 0 936990 2737700 KLDGFPLLR LDQFDAIDFSDNEIRKLDGFPLLRRLKTLL SDNEIRKLDGFPLLRRLKTLLVNNNRICRI R K L L R R 0 1 0 1 0 0 0 1 0 0 3 1 0 1 1 0 0 0 0 0 0 0 9 1 1057.6284 P09661 P09661 56 64 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 0.00010231 147.06 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 26894000 0 10767000 16127000 7019 491 7311 29901;29902;29903;29904 25290;25291 25290 2 0 5477500 2712300 KLDKENLSDER EKGDEKELDKREKAKKLDKENLSDERASGQ EKAKKLDKENLSDERASGQSCTLPKRSDSE K K L E R A 0 1 1 2 0 0 2 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 11 2 1345.6838 Q9BZI7 Q9BZI7 303 313 UPF3B Regulator of nonsense transcripts 3B yes yes 3 0.034575 62.924 By matching By MS/MS 3 0.816 1 1 1 1 2 8899200 0 570750 8328500 7020 1943 7312 29905;29906;29907 25292 25292 1 0 257020 1577000 KLDLNQEEK IGSTSKPQESPKGKRKLDLNQEEKKTPSKP SPKGKRKLDLNQEEKKTPSKPPAQLSPSVP R K L E K K 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 9 1 1115.5823 P18887 P18887 247 255 XRCC1 DNA repair protein XRCC1 yes yes 2 2.0651E-16 179.81 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 17331000 0 2051500 15280000 7021 603 7313 29908;29909;29910 25293;25294 25294 2 0 874550 2920500 KLDPELHLDIK ATVKILITTVPPNLRKLDPELHLDIKVLQS PNLRKLDPELHLDIKVLQSALAAIRHARWF R K L I K V 0 0 0 2 0 0 1 0 1 1 3 2 0 0 1 0 0 0 0 0 0 0 11 1 1319.7449 Q12905 Q12905 186 196 ILF2 Interleukin enhancer-binding factor 2 yes yes 2;3 2.834E-06 153.11 By MS/MS By MS/MS 5.3 0.9 2 4 3 1 4 6 384190000 0 72668000 311530000 7022 1210 7314 29911;29912;29913;29914;29915;29916;29917;29918;29919;29920 25295;25296;25297;25298;25299;25300 25296 6 0 19270000 44038000 KLDPGSEETQTLVR LSPDWQVDYESYTWRKLDPGSEETQTLVRE RKLDPGSEETQTLVREYFSWEGAFQHVGKA R K L V R E 0 1 0 1 0 1 2 1 0 0 2 1 0 0 1 1 2 0 0 1 0 0 14 1 1571.8155 P26641 P26641 401 414 EEF1G Elongation factor 1-gamma yes yes 2;3 7.5334E-17 187.35 By MS/MS By MS/MS 4.44 1.64 1 2 1 4 1 2 7 263320000 0 30171000 233150000 7023 674 7315 29921;29922;29923;29924;29925;29926;29927;29928;29929 25301;25302;25303;25304;25305;25306 25305 6 0 7777100 34575000 KLDQEMEQLNHHTTTR ISLQNEKADLDRTLRKLDQEMEQLNHHTTT LDQEMEQLNHHTTTRTQMEMLTKDKADKDE R K L T R T 0 1 1 1 0 2 2 0 2 0 2 1 1 0 0 0 3 0 0 0 0 0 16 1 1979.9483 Q92878 Q92878 520 535 RAD50 DNA repair protein RAD50 yes yes 4 0.0003696 88.992 By MS/MS 1 0 1 1 20727000 0 0 20727000 7024 1726 7316 29930 25307 25307 1 0 0 4465900 KLDSLTTSFGFPVGAATLVDEVGVDVAK MSEVIRILQEGVDPKKLDSLTTSFGFPVGA GAATLVDEVGVDVAKHVAEDLGKVFGERFG K K L A K H 3 0 0 3 0 0 1 3 0 0 3 2 0 2 1 2 3 0 0 5 0 0 28 1 2835.4906 P40939 P40939 570 597 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 3 4.0442E-28 120.93 By MS/MS 3 0 1 1 3605000 0 0 3605000 7025 789 7317 29931 25308 25308 1 0 0 699200 KLDVEEPDSANSSFYSTR ARRRTTQIINITMTKKLDVEEPDSANSSFY VEEPDSANSSFYSTRSAPASQASLRATSST K K L T R S 1 1 1 2 0 0 2 0 0 0 1 1 0 1 1 4 1 0 1 1 0 0 18 1 2043.9385 Q14980 Q14980 1822 1839 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 4.9596E-114 261.27 By MS/MS By MS/MS 2 1.73 3 1 1 3 75530000 0 12551000 62978000 7026 1327 7318 29932;29933;29934;29935 25309;25310;25311;25312 25311 4 0 6134800 12822000 KLDYGQHVVAGTPGR CHACIGGTNVGEDIRKLDYGQHVVAGTPGR KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI R K L G R V 1 1 0 1 0 1 0 3 1 0 1 1 0 0 1 0 1 0 1 2 0 0 15 1 1596.8372 P38919 P38919 152 166 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2;3;4 4.9036E-34 207.25 By MS/MS By MS/MS 4.5 1.57 1 1 2 4 1 1 4 6 282530000 0 19950000 262580000 7027 775 7319 29936;29937;29938;29939;29940;29941;29942;29943;29944;29945 25313;25314;25315;25316;25317;25318;25319;25320;25321 25320 8 0 6428200 38927000 KLEAAEDIAYQLSR ANSLATAGDGLIELRKLEAAEDIAYQLSRS RKLEAAEDIAYQLSRSRNITYLPAGQSVLL R K L S R S 3 1 0 1 0 1 2 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 14 1 1605.8362 P35232 P35232 240 253 PHB Prohibitin yes yes 2;3 8.3061E-05 160.23 By matching By MS/MS 6 0 3 1 2 16304000 2109100 0 14195000 7028 740 7320 29946;29947;29948 25322;25323 25322 2 2808400 0 2123700 KLEAELLQIEER QVLKRQVQSLMVHQRKLEAELLQIEERHQE HQRKLEAELLQIEERHQEKKRKFLESTDSF R K L E R H 1 1 0 0 0 1 4 0 0 1 3 1 0 0 0 0 0 0 0 0 0 0 12 1 1469.809 Q969G3 Q969G3 240 251 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 2;3 0.00034288 132.17 By MS/MS 4.33 0.471 2 1 3 53459000 0 0 53459000 7029 1741 7321 29949;29950;29951 25324;25325 25325 2 0 0 8488000 KLEAQETLNEEDKAK KITELLNKTDNRPLKKLEAQETLNEEDKAK KLEAQETLNEEDKAKIAKSKKKMRQKVQRG K K L A K I 2 0 1 1 0 1 4 0 0 0 2 3 0 0 0 0 1 0 0 0 0 0 15 2 1744.8843 Q9UIF9 Q9UIF9 695 709 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes yes 3 0.00034945 97.073 By MS/MS 1 0 1 1 11921000 0 0 11921000 7030 2163 7322 29952 25326 25326 1 0 0 2568500 KLEEEEDGKLK PKKIKTEDTKKEKKRKLEEEEDGKLKKPKN EKKRKLEEEEDGKLKKPKNKDKDKKVPEPD R K L L K K 0 0 0 1 0 0 4 1 0 0 2 3 0 0 0 0 0 0 0 0 0 0 11 2 1316.6824 P11387 P11387 164 174 TOP1 DNA topoisomerase 1 yes yes 2;3 1.9125E-44 218.18 By MS/MS By MS/MS 3.33 1.33 3 3 1 1 1 4 5 82615000 0 22927000 59688000 7031 523 7323 29953;29954;29955;29956;29957;29958;29959;29960;29961 25327;25328;25329;25330;25331 25330 5 0 10298000 11277000 KLEEEGEQFVK SDGFKANLVFKEIEKKLEEEGEQFVKKIGG EIEKKLEEEGEQFVKKIGGIFAFKVKDGPG K K L V K K 0 0 0 0 0 1 4 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 11 1 1334.6718 P22307 P22307 443 453 SCP2 Non-specific lipid-transfer protein yes yes 2 0.0005737 127.83 By MS/MS 9 0 1 1 3413800 0 0 3413800 7032 629 7324 29962 25332 25332 1 0 0 1090500 KLEELEKEEELR EGHNIADYIDPAIMKKLEELEKEEELRTAA IMKKLEELEKEEELRTAAGEYDSVSESEDE K K L L R T 0 1 0 0 0 0 6 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 2 1543.8094 Q9BZE4 Q9BZE4 449 460 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 3.8544E-09 172.99 By MS/MS By MS/MS 3 0 2 1 1 48452000 0 6981600 41471000 7033 1941 7325 29963;29964 25333;25334 25333 2 0 2976200 8043300 KLEGDSTDLSDQIAELQAQIAELK RREEKQRQELEKTRRKLEGDSTDLSDQIAE SDQIAELQAQIAELKMQLAKKEEELQAALA R K L L K M 3 0 0 3 0 3 3 1 0 2 4 2 0 0 0 2 1 0 0 0 0 0 24 1 2614.3338 P35579 P35579 1052 1075 MYH9 Myosin-9 yes yes 3 1.5602E-20 125.35 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 35680000 0 17170000 18510000 7034 752 7326 29965;29966;29967 25335;25336;25337 25337 3 0 8119700 3988300 KLEGELTEEVEMAK EEYITTSKQSLEEQKKLEGELTEEVEMAKR KKLEGELTEEVEMAKRRIDEINKELNQVME K K L A K R 1 0 0 0 0 0 5 1 0 0 2 2 1 0 0 0 1 0 0 1 0 0 14 1 1604.7967 Q14683 Q14683 454 467 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 3.6122E-74 189.13 By MS/MS 1.5 0.5 1 1 2 14855000 0 0 14855000 7035 1312 7327 29968;29969 25338;25339 25338 2 0 0 3356900 KLEHLITELVHQR LADSVLMEQPPLRRRKLEHLITELVHQRDV RRKLEHLITELVHQRDVTRSLIKSKIDNAK R K L Q R D 0 1 0 0 0 1 2 0 2 1 3 1 0 0 0 0 1 0 0 1 0 0 13 1 1614.9206 Q14204 Q14204 1807 1819 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 4 0.030882 39.581 By MS/MS 1.5 0.5 1 1 2 5675100 0 0 5675100 7036 1292 7328 29970;29971 25340 25340 0 0 0 1231600 KLERPPETPTVDPTVK EEGRPGKKLKKVKLRKLERPPETPTVDPTV LERPPETPTVDPTVKYERQPEYLDATGGTL R K L V K Y 0 1 0 1 0 0 2 0 0 0 1 2 0 0 4 0 3 0 0 2 0 0 16 2 1805.9887 Q14839 Q14839 696 711 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2;3 1.6887E-13 131.13 By MS/MS 1.33 0.471 2 1 3 127040000 0 0 127040000 7037 1321 7329 29972;29973;29974 25341;25342;25343 25342 2 0 0 27546000 KLESILAQDQDLKER KEIKINPEKLIDVQKKLESILAQDQDLKER KLESILAQDQDLKERAQRCFVSYVRSVYLM K K L E R A 1 1 0 2 0 2 2 0 0 1 3 2 0 0 0 1 0 0 0 0 0 0 15 2 1784.9632 Q13206 Q13206 453 467 DDX10 Probable ATP-dependent RNA helicase DDX10 yes yes 3 0.062146 44.045 By MS/MS 2 0 1 1 5091800 0 0 5091800 7038 1230 7330 29975 25344 25344 1 0 0 1150600 KLETAVNLAWTAGNSNTR DGTEFGGSIYQKVNKKLETAVNLAWTAGNS TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K K L T R F 3 1 3 0 0 0 1 1 0 0 2 1 0 0 0 1 3 1 0 1 0 0 18 1 1945.0017 P21796 P21796 201 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 2.4974E-79 244.36 By MS/MS 6 0 1 1 16011000 0 0 16011000 7039 625 7331 29976 25345 25345 1 0 0 2395400 KLETEETVPETDVETK MEKFTDADKETEIVKKLETEETVPETDVET LETEETVPETDVETKKPEVASWVHFDNLKG K K L T K K 0 0 0 1 0 0 5 0 0 0 1 2 0 0 1 0 4 0 0 2 0 0 16 1 1846.9048 Q03701 Q03701 659 674 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2;3 4.2918E-18 185.95 By MS/MS 2 0.707 1 2 1 4 33089000 0 0 33089000 7040 1157 7332 29977;29978;29979;29980 25346;25347 25347 2 0 0 7341400 KLEVNEAELLR KTVRGSLERQAGQIKKLEVNEAELLRRRNF GQIKKLEVNEAELLRRRNFKVMIYQDEVKL K K L L R R 1 1 1 0 0 0 3 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 11 1 1312.7351 Q6NZI2 Q6NZI2 137 147 PTRF Polymerase I and transcript release factor yes yes 2;3 0.00057428 130.23 By matching By MS/MS 4.2 0.748 1 2 2 1 4 37507000 1971000 0 35536000 7041 1483 7333 29981;29982;29983;29984;29985 25348;25349;25350 25348 3 2274000 0 5470400 KLFIGGLSFETTDDSLR RGEEGHDPKEPEQLRKLFIGGLSFETTDDS FIGGLSFETTDDSLREHFEKWGTLTDCVVM R K L L R E 0 1 0 2 0 0 1 2 0 1 3 1 0 2 0 2 2 0 0 0 0 0 17 1 1897.9785 P51991 P51991 36 52 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 1.6232E-06 140.82 By matching By MS/MS 4.25 0.829 1 1 2 1 3 14391000 1439300 0 12951000 7042 900 7334 29986;29987;29988;29989 25351;25352 25351 2 1660600 0 1846900 KLFIGGLSFETTDDSLREHFEK RGEEGHDPKEPEQLRKLFIGGLSFETTDDS SFETTDDSLREHFEKWGTLTDCVVMRDPQT R K L E K W 0 1 0 2 0 0 3 2 1 1 3 2 0 3 0 2 2 0 0 0 0 0 22 2 2568.286 P51991 P51991 36 57 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 5.2846E-07 84.689 By MS/MS 5 0 2 2 17035000 0 0 17035000 7043 900 7335 29990;29991 25353;25354 25353 2 0 0 2376100 KLFIGGLSFETTDESLR ______________________________ FIGGLSFETTDESLRSHFEQWGTLTDCVVM R K L L R S 0 1 0 1 0 0 2 2 0 1 3 1 0 2 0 2 2 0 0 0 0 0 17 1 1911.9942 P09651;Q32P51 P09651 15 31 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 4.5196E-92 255.16 By MS/MS By MS/MS 6 0.667 2 5 2 2 7 243460000 0 60761000 182700000 7044 490 7336 29992;29993;29994;29995;29996;29997;29998;29999;30000 25355;25356;25357;25358;25359;25360 25360 6 0 21033000 26888000 KLFIGGLSFETTEESLR TVPLERKKREKEQFRKLFIGGLSFETTEES FIGGLSFETTEESLRNYYEQWGKLTDCVVM R K L L R N 0 1 0 0 0 0 3 2 0 1 3 1 0 2 0 2 2 0 0 0 0 0 17 1 1926.0098 P22626 P22626 22 38 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 1.6433E-05 141.88 By MS/MS By MS/MS 4.64 1.82 1 1 1 1 2 4 1 2 9 239540000 0 32055000 207490000 7045 632 7337 30001;30002;30003;30004;30005;30006;30007;30008;30009;30010;30011 25361;25362;25363;25364;25365;25366 25362 6 0 11096000 31103000 KLFIGMISK MKPADSEKNNAVEDRKLFIGMISKKCTEND NAVEDRKLFIGMISKKCTENDIRVMFSSFG R K L S K K 0 0 0 0 0 0 0 1 0 2 1 2 1 1 0 1 0 0 0 0 0 0 9 1 1035.6151 Q92879 Q92879 109 117 CELF1 CUGBP Elav-like family member 1 yes yes 2 0.0056761 100.57 By MS/MS 4 0 1 1 5731000 0 5731000 0 7046 1727 7338 30012 25367 25367 1 0 1901900 0 KLFLVQLQEK YPYIPAHITKPKEHKKLFLVQLQEKALFAV PKEHKKLFLVQLQEKALFAVPKNYKLVAAP K K L E K A 0 0 0 0 0 2 1 0 0 0 3 2 0 1 0 0 0 0 0 1 0 0 10 1 1244.7493 O43809 O43809 173 182 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 3 0.012228 67.726 By MS/MS 7 0 1 1 2909900 0 0 2909900 7047 213 7339 30013 25368 25368 1 0 0 516350 KLFVGGIKEDTEEHHLR AREESGKPGAHVTVKKLFVGGIKEDTEEHH FVGGIKEDTEEHHLRDYFEEYGKIDTIEII K K L L R D 0 1 0 1 0 0 3 2 2 1 2 2 0 1 0 0 1 0 0 1 0 0 17 2 2007.0538 P22626 P22626 113 129 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 3;4;5 3.2833E-28 204.52 By MS/MS By MS/MS 5.35 1.49 1 1 1 3 9 11 3 2 8 23 744040000 0 104140000 639900000 7048 632 7340 30014;30015;30016;30017;30018;30019;30020;30021;30022;30023;30024;30025;30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038;30039;30040;30041;30042;30043;30044 25369;25370;25371;25372;25373;25374;25375;25376;25377;25378;25379;25380;25381;25382;25383;25384;25385;25386;25387 25386 19 0 34506000 93339000 KLFVGGLK SREDSARPGAHAKVKKLFVGGLKGDVAEGD GAHAKVKKLFVGGLKGDVAEGDLIEHFSQF K K L L K G 0 0 0 0 0 0 0 2 0 0 2 2 0 1 0 0 0 0 0 1 0 0 8 1 860.54837 Q13151 Q13151 99 106 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.021749 90.777 By MS/MS 5 0 1 1 15795000 0 15795000 0 7049 1225 7341 30045 25388 25388 1 0 4071500 0 KLGEMWNNLNDSEK IKSTNPGISIGDVAKKLGEMWNNLNDSEKQ KKLGEMWNNLNDSEKQPYITKAAKLKEKYE K K L E K Q 0 0 3 1 0 0 2 1 0 0 2 2 1 0 0 1 0 1 0 0 0 0 14 1 1676.7828 O15347 O15347 126 139 HMGB3 High mobility group protein B3 yes yes 2;3 4.4683E-07 169.09 By MS/MS 6.67 0.471 1 2 3 49041000 0 0 49041000 7050 176 7342 30046;30047;30048 25389;25390 25389 2 0 0 8563400 KLGEMWNNTAADDKQPYEK IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ MWNNTAADDKQPYEKKAAKLKEKYEKDIAA K K L E K K 2 0 2 2 0 1 2 1 0 0 1 3 1 0 1 0 1 1 1 0 0 0 19 2 2237.0423 P09429 P09429 128 146 HMGB1 High mobility group protein B1 yes yes 2;3;4 2.7816E-178 296.27 By MS/MS 6.8 0.748 4 4 2 10 499640000 0 0 499640000 7051 484 7343;7344 30049;30050;30051;30052;30053;30054;30055;30056;30057;30058 25391;25392;25393;25394;25395;25396;25397;25398 25395 197 8 0 0 79666000 KLGEMWSEQSAK IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ TAKKLGEMWSEQSAKDKQPYEQKAAKLKEK K K L A K D 1 0 0 0 0 1 2 1 0 0 1 2 1 0 0 2 0 1 0 0 0 0 12 1 1392.6708 P26583 P26583 128 139 HMGB2 High mobility group protein B2 yes yes 2;3 7.6337E-12 179.35 By MS/MS By MS/MS 6.46 0.634 1 5 7 6 7 939660000 0 87045000 852620000 7052 670 7345;7346 30059;30060;30061;30062;30063;30064;30065;30066;30067;30068;30069;30070;30071 25399;25400;25401;25402;25403;25404;25405;25406;25407;25408 25400 300 10 0 43478000 139110000 KLHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR ERKVESLQEEIAFLKKLHEEEIQELQAQIQ IDVDVSKPDLTAALRDVRQQYESVAAKNLQ K K L L R D 3 1 0 3 0 6 5 0 2 3 4 2 0 0 1 1 1 0 0 3 0 0 35 2 4050.1022 P08670 P08670 236 270 VIM Vimentin yes yes 4;5 1.2525E-88 196.35 By MS/MS 3.6 1.02 1 1 2 1 5 233880000 0 0 233880000 7053 476 7347 30072;30073;30074;30075;30076 25409;25410;25411;25412 25411 4 0 0 38803000 KLIYFQLHR WALESDNNTALLLSKKLIYFQLHRALKMIV ALLLSKKLIYFQLHRALKMIVDPVEPHGEM K K L H R A 0 1 0 0 0 1 0 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 9 1 1216.7081 Q13263 Q13263 366 374 TRIM28 Transcription intermediary factor 1-beta yes yes 3 0.00012932 113.26 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 26775000 0 8880100 17895000 7054 1235 7348 30077;30078 25413;25414 25414 2 0 3785600 4043800 KLLADQAEAR LMEHIHKLKADKARKKLLADQAEARRSKTK DKARKKLLADQAEARRSKTKEARKRREERL K K L A R R 3 1 0 1 0 1 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1113.6142 P84098 P84098 153 162 RPL19 60S ribosomal protein L19 yes yes 2 0.0008293 117.53 By MS/MS 7 0 1 1 5423400 0 0 5423400 7055 1111 7349 30079 25415 25415 1 0 0 962350 KLLASANLEEVTMK LKKPPTDEELKETIKKLLASANLEEVTMKQ KKLLASANLEEVTMKQICKKVYENYPTYDL K K L M K Q 2 0 1 0 0 0 2 0 0 0 3 2 1 0 0 1 1 0 0 1 0 0 14 1 1545.8436 P35659 P35659 331 344 DEK Protein DEK yes yes 2 0.00021048 154.47 By MS/MS 4.5 0.5 1 1 2 23790000 0 0 23790000 7056 758 7350 30080;30081 25416;25417 25417 2 0 0 3644000 KLLASLVK DHQYQFLEDAVRNQRKLLASLVKRLGDKHA DAVRNQRKLLASLVKRLGDKHATLQKSTKE R K L V K R 1 0 0 0 0 0 0 0 0 0 3 2 0 0 0 1 0 0 0 1 0 0 8 1 870.59024 Q13263 Q13263 254 261 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.045559 79.596 By matching By MS/MS 2.75 1.48 1 1 1 1 1 3 86251000 0 3742700 82509000 7057 1235 7351 30082;30083;30084;30085 25418 25418 1 0 1829400 16101000 KLLEAQSHFR KRWSQLLANSAARKKKLLEAQSHFRKVEDL AARKKKLLEAQSHFRKVEDLFLTFAKKASA K K L F R K 1 1 0 0 0 1 1 0 1 0 2 1 0 1 0 1 0 0 0 0 0 0 10 1 1227.6724 Q13813 Q13813 2078 2087 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.024296 58.889 By MS/MS 1 0 1 1 4038100 0 4038100 0 7058 1268 7352 30086 25419 25419 1 0 1973800 0 KLLEGEECR MNVKLALDVEIATYRKLLEGEECRMSGDLS EIATYRKLLEGEECRMSGDLSSNVTVSVTS R K L C R M 0 1 0 0 1 0 3 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1132.5547 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5;CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7 CON__P35908 488 496 KRT6A;KRT5;KRT6C;KRT76;KRT2;KRT73;KRT74 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74 no no 2 0.00090256 125.31 By MS/MS By matching By MS/MS 5.4 1.85 1 1 1 1 1 3 1 1 17306000 8537000 157070 8612200 + 7059 65;66;68;37;47;58;69;71;1135;86;80 7353 30087;30088;30089;30090;30091 25420;25421;25422 25420 3 7129900 40489 1528200 KLLEGEEER LDVKLALDMEISAYRKLLEGEEERLKLSPS EISAYRKLLEGEEERLKLSPSPSSRVTVSR R K L E R L 0 1 0 0 0 0 4 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1101.5666 P02545;P20700;Q03252 P20700 379 387 LMNA;LMNB1;LMNB2 Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2 no no 2 8.956E-24 194.2 By MS/MS 3 0 1 1 74826000 0 0 74826000 7060 619;387;1156 7354 30092 25423 25423 1 0 0 14513000 KLLEGEESR LNVKMALDIEIATYRKLLEGEESRISLPLP EIATYRKLLEGEESRISLPLPNFSSLNLRE R K L S R I 0 1 0 0 0 0 3 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 9 1 1059.556 CON__P05787;P05787;CON__Q9H552;CON__Q9DCV7;P08670;P41219;P17661 P08670 402 410 KRT8;VIM;PRPH;DES Keratin, type II cytoskeletal 8;Vimentin;Peripherin;Desmin no no 2 1.1507E-10 164.77 By MS/MS By MS/MS 4.8 1.08 1 3 4 1 1 2 8 269410000 0 45411000 224000000 + 7061 476;49 7355 30093;30094;30095;30096;30097;30098;30099;30100;30101;30102 25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437 25433 14 0 13471000 37788000 KLLGLPEDYLYGQTTTYLTYNDFINK RKEWLTNFMEDRRQRKLLGLPEDYLYGQTT GQTTTYLTYNDFINKELILFSNSDNERSIP R K L N K E 0 0 2 2 0 1 1 2 0 1 5 2 0 1 1 0 4 0 4 0 0 0 26 1 3082.5539 P11388 P11388 676 701 TOP2A DNA topoisomerase 2-alpha yes yes 3 4.1854E-14 99.711 By MS/MS 1.5 0.5 1 1 2 10411000 0 0 10411000 7062 524 7356 30103;30104 25438;25439 25439 2 0 0 2259900 KLLLSATSGEK CLHNLPKAVDDKQLRKLLLSATSGEKGVRI KQLRKLLLSATSGEKGVRIKECRVMRDLKG R K L E K G 1 0 0 0 0 0 1 1 0 0 3 2 0 0 0 2 1 0 0 0 0 0 11 1 1145.6656 Q9NW13 Q9NW13 505 515 RBM28 RNA-binding protein 28 yes yes 2 0.031405 85.355 By MS/MS 2.5 0.5 1 1 2 9091600 0 0 9091600 7063 2075 7357 30105;30106 25440 25440 1 0 0 1911000 KLLLSSLEEAKK VKQIKTQIEQTNEERKLLLSSLEEAKKKKE EERKLLLSSLEEAKKKKEDALNDTRDSENK R K L K K K 1 0 0 0 0 0 2 0 0 0 4 3 0 0 0 2 0 0 0 0 0 0 12 2 1357.8181 CON__P17697 CON__P17697 62 73 yes yes 3 0.03324 62.298 By matching By MS/MS 5.67 0.471 1 2 2 1 12186000 7087000 0 5098600 + 7064 60 7358 30107;30108;30109 25441 25441 1 8077800 0 762810 KLLVGSEDYGR FFRDMDDEESWIKEKKLLVGSEDYGRDLTG IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL K K L G R D 0 1 0 1 0 0 1 2 0 0 2 1 0 0 0 1 0 0 1 1 0 0 11 1 1235.651 Q13813 Q13813 1784 1794 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 7.6797E-07 156.83 By MS/MS By MS/MS 1 0 2 1 1 32914000 0 10049000 22864000 7065 1268 7359 30110;30111 25442;25443 25443 2 0 4911900 4926500 KLNHQEVVEEDKR LRKFRELHLMRNEARKLNHQEVVEEDKRLK ARKLNHQEVVEEDKRLKLPANWEAKKARLE R K L K R L 0 1 1 1 0 1 3 0 1 0 1 2 0 0 0 0 0 0 0 2 0 0 13 2 1622.8376 O95926 O95926 49 61 SYF2 Pre-mRNA-splicing factor SYF2 yes yes 3;4 0.0078869 76.588 By MS/MS By MS/MS 6 0 3 1 2 13003000 0 1149200 11854000 7066 348 7360 30112;30113;30114 25444;25445;25446 25444 3 0 397810 1773500 KLNKEELPVIPK AKKRKGSSSQAPASKKLNKEELPVIPKGKP ASKKLNKEELPVIPKGKPKSGRVWKDRSKK K K L P K G 0 0 1 0 0 0 2 0 0 1 2 3 0 0 2 0 0 0 0 1 0 0 12 2 1406.8497 Q9H6F5 Q9H6F5 226 237 CCDC86 Coiled-coil domain-containing protein 86 yes yes 3 0.0069731 83.137 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 72401000 0 37730000 34671000 7067 1986 7361 30115;30116;30117 25447;25448;25449 25449 3 0 12747000 5662900 KLNQALLDLHALGSAR GKTPDAMKAAMALEKKLNQALLDLHALGSA LNQALLDLHALGSARTDPHLCDFLETHFLD K K L A R T 3 1 1 1 0 1 0 1 1 0 5 1 0 0 0 1 0 0 0 0 0 0 16 1 1718.9792 P02792 P02792 106 121 FTL Ferritin light chain yes yes 3 0.008622 55.589 By MS/MS 7.5 0.5 1 1 2 14357000 0 0 14357000 7068 402 7362 30118;30119 25450 25450 1 0 0 2360100 KLNVTEQEKIDK VEHINKTIAPALVSKKLNVTEQEKIDKLMI VSKKLNVTEQEKIDKLMIEMDGTENKSKFG K K L D K L 0 0 1 1 0 1 2 0 0 1 1 3 0 0 0 0 1 0 0 1 0 0 12 2 1443.7933 P06733 P06733 81 92 ENO1 Alpha-enolase yes yes 3 0.024161 66.708 By MS/MS By MS/MS 5 0 2 1 1 11197000 0 3657500 7539500 7069 448 7363 30120;30121 25451;25452 25451 2 0 942800 1051600 KLNYEENKEESLLEK EAVKRLKEKLEAEMKKLNYEENKEESLLEK KLNYEENKEESLLEKRRQLSRDIGRLKETY K K L E K R 0 0 2 0 0 0 5 0 0 0 3 3 0 0 0 1 0 0 1 0 0 0 15 2 1864.9418 O95347 O95347 467 481 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 0.00046731 94.487 By matching By MS/MS 2 0 2 1 1 29182000 4724200 0 24458000 7070 321 7364 30122;30123 25453 25453 1 5692100 0 5527000 KLPAIALDLLR VNVLKMAASSVKKDRKLPAIALDLLRLALK KKDRKLPAIALDLLRLALKEDKFPRFWKEV R K L L R L 2 1 0 1 0 0 0 0 0 1 4 1 0 0 1 0 0 0 0 0 0 0 11 1 1221.7809 Q9BQG0 Q9BQG0 263 273 MYBBP1A Myb-binding protein 1A yes yes 3 0.00069393 103.87 By MS/MS 2 0.816 1 1 1 3 8839900 0 0 8839900 7071 1885 7365 30124;30125;30126 25454;25455 25454 2 0 0 1948000 KLPEEEVESSR FESSSSIGAEKPRNKKLPEEEVESSRTPWL PRNKKLPEEEVESSRTPWLYEQEGEVEKPF K K L S R T 0 1 0 0 0 0 4 0 0 0 1 1 0 0 1 2 0 0 0 1 0 0 11 1 1301.6463 Q15154 Q15154 1198 1208 PCM1 Pericentriolar material 1 protein yes yes 2;3 0.0093015 100.48 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 15948000 0 5577600 10370000 7072 1349 7366 30127;30128;30129;30130;30131 25456;25457;25458;25459 25458 4 0 2654300 2234400 KLPEEVVK DKRMWQSMCPLRQFRKLPEEVVKKIEKKNF CPLRQFRKLPEEVVKKIEKKNFPFERLYDL R K L V K K 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 0 0 0 0 2 0 0 8 1 940.55933 O75643 O75643 1134 1141 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0017753 121.67 By MS/MS 1 0 1 1 19581000 0 19581000 0 7073 277 7367 30132 25460 25460 1 0 9570900 0 KLPGFPTQDDEVMMLTER YDVELFQRIEHLIGKKLPGFPTQDDEVMML GFPTQDDEVMMLTERVAEAQRFARMELREH K K L E R V 0 1 0 2 0 1 2 1 0 0 2 1 2 1 2 0 2 0 0 1 0 0 18 1 2106.0126 Q9H0S4 Q9H0S4 385 402 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 3.7805E-05 104.17 By MS/MS 5 0 1 1 4857700 0 0 4857700 7074 1964 7368 30133 25461 25461 1 0 0 677560 KLPIDVTEGEVISLGLPFGK DSRSAGVPSRVIHIRKLPIDVTEGEVISLG VTEGEVISLGLPFGKVTNLLMLKGKNQAFI R K L G K V 0 0 0 1 0 0 2 3 0 2 3 2 0 1 2 1 1 0 0 2 0 0 20 1 2111.1878 P26599 P26599 65 84 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3 4.9952E-13 123.97 By MS/MS By MS/MS 3.29 1.39 2 2 3 5 1 1 6 8 551860000 0 107920000 443940000 7075 671 7369 30134;30135;30136;30137;30138;30139;30140;30141;30142;30143;30144;30145;30146;30147 25462;25463;25464;25465;25466;25467;25468;25469;25470;25471;25472;25473;25474 25471 13 0 36379000 76128000 KLPIQEFHLSR GSPVLMRHLTASEAKKLPIQEFHLSRILQE SEAKKLPIQEFHLSRILQELGLNQEQFVDL K K L S R I 0 1 0 0 0 1 1 0 1 1 2 1 0 1 1 1 0 0 0 0 0 0 11 1 1366.7721 P39748 P39748 201 211 FEN1 Flap endonuclease 1 yes yes 3 0.0047834 80.014 By MS/MS By MS/MS 5.29 1.03 2 2 2 1 3 4 156840000 0 51875000 104970000 7076 780 7370 30148;30149;30150;30151;30152;30153;30154 25475;25476;25477;25478;25479;25480 25476 6 0 13628000 15193000 KLPPPPGSPLGHSPTASPPPTAR EARSPSDLHISPLAKKLPPPPGSPLGHSPT PLGHSPTASPPPTARKMFPGLAAPSLPKKL K K L A R K 2 1 0 0 0 0 0 2 1 0 2 1 0 0 9 3 2 0 0 0 0 0 23 1 2258.2172 O95785 O95785 1139 1161 WIZ Protein Wiz yes yes 4 0.028491 30.597 By MS/MS 2 0 1 1 21824000 0 0 21824000 7077 340 7371 30155 25481 25481 1 0 0 4931800 KLPVSSLTISR CLADLASLMDKTFERKLPVSSLTISRLIDN TFERKLPVSSLTISRLIDNISSREEIDHAE R K L S R L 0 1 0 0 0 0 0 0 0 1 2 1 0 0 1 3 1 0 0 1 0 0 11 1 1199.7238 Q92552 Q92552 64 74 MRPS27 28S ribosomal protein S27, mitochondrial yes yes 3 0.027859 49.025 By MS/MS 5 0 1 1 0 0 0 0 7078 1707 7372 30156 25482 25482 1 0 0 0 KLQDLAGGIFPEDEIPEK STPSQNRKRLYKVIRKLQDLAGGIFPEDEI DLAGGIFPEDEIPEKACRRLLEGRRQKKTK R K L E K A 1 0 0 2 0 1 3 2 0 2 2 2 0 1 2 0 0 0 0 0 0 0 18 1 1998.031 P56182 P56182 330 347 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2;3 5.3961E-05 101.42 By MS/MS 4 0 2 2 12771000 0 0 12771000 7079 948 7373 30157;30158 25483;25484 25484 2 0 0 2086000 KLQDVFEMR YKYNPPDHEVVAMARKLQDVFEMRFAKMPD VVAMARKLQDVFEMRFAKMPDEPVEAPALP R K L M R F 0 1 0 1 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 9 1 1164.5961 Q15059;O60885 Q15059 403 411 BRD3;BRD4 Bromodomain-containing protein 3;Bromodomain-containing protein 4 no no 2 0.00092327 117.84 By matching By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 1 3 48139000 2074200 7130400 38935000 7080 1342;239 7374 30159;30160;30161;30162;30163 25485;25486 25486 2 2074200 3210900 8082200 KLQEVDSLWK ETSVGYAIFKVLNEKKLQEVDSLWKEFETP VLNEKKLQEVDSLWKEFETPEKANKIVKLK K K L W K E 0 0 0 1 0 1 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 10 1 1244.6765 Q9Y2X3 Q9Y2X3 21 30 NOP58 Nucleolar protein 58 yes yes 2 0.0006839 127.93 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 66741000 0 16311000 50429000 7081 2254 7375 30164;30165;30166;30167 25487;25488;25489 25489 3 0 5528100 9046300 KLQLEETMPSPYGR SGKAIKGKVGKPKVKKLQLEETMPSPYGRR KKLQLEETMPSPYGRRIIPEITAMKADASK K K L G R R 0 1 0 0 0 1 2 1 0 0 2 1 1 0 2 1 1 0 1 0 0 0 14 1 1647.829 Q02880 Q02880 1227 1240 TOP2B DNA topoisomerase 2-beta yes yes 2 0.0014455 112.64 By MS/MS 1 0 1 1 6024300 0 0 6024300 7082 1150 7376 30168 25490 25490 1 0 0 1298000 KLSSWDQAETPGHTPSLR RWDQTADQTPGATPKKLSSWDQAETPGHTP SWDQAETPGHTPSLRWDETPGRAKGSETPG K K L L R W 1 1 0 1 0 1 1 1 1 0 2 1 0 0 2 3 2 1 0 0 0 0 18 1 2008.9967 O75533 O75533 214 231 SF3B1 Splicing factor 3B subunit 1 yes yes 3;4 7.3474E-09 110.82 By MS/MS By MS/MS 1.67 0.471 2 4 2 4 76229000 0 22198000 54031000 7083 270 7377 30169;30170;30171;30172;30173;30174 25491;25492;25493;25494 25492 4 0 9996000 11998000 KLSSWVLLMK PMMKRLGMFNIQHCKKLSSWVLLMKYLGNA IQHCKKLSSWVLLMKYLGNATAIFFLPDEG K K L M K Y 0 0 0 0 0 0 0 0 0 0 3 2 1 0 0 2 0 1 0 1 0 0 10 1 1203.705 P01009 P01009 258 267 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.00052028 123.75 By MS/MS 9.5 0.5 1 1 2 10062000 10062000 0 0 7084 367 7378 30175;30176 25495 25495 1 6656600 0 0 KLTATPTPLGGMTGFHMQTEDR LPPPAGYVPIRTPARKLTATPTPLGGMTGF PLGGMTGFHMQTEDRTMKSVNDQPSGNLPF R K L D R T 1 1 0 1 0 1 1 3 1 0 2 1 2 1 2 0 5 0 0 0 0 0 22 1 2388.1566 O75533 O75533 430 451 SF3B1 Splicing factor 3B subunit 1 yes yes 3;4 1.5429E-24 168.68 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 69540000 0 3109200 66431000 7085 270 7379 30177;30178;30179;30180;30181 25496;25497;25498;25499 25499 4 0 1400100 14825000 KLVAASQAALGL CKADDKETCFAEEGKKLVAASQAALGL___ EGKKLVAASQAALGL_______________ K K L G L - 4 0 0 0 0 1 0 1 0 0 3 1 0 0 0 1 0 0 0 1 0 0 12 1 1140.6867 CON__P02768-1;P02768 CON__P02768-1 598 609 ALB Serum albumin yes no 2 0.0056307 107.15 By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 9 156110000 156110000 0 0 + 7086 44 7380 30182;30183;30184;30185;30186;30187;30188;30189;30190 25500;25501 25500 2 151140000 0 0 KLVESLPQEIK EIKNYIQGINLVQAKKLVESLPQEIKANVA VQAKKLVESLPQEIKANVAKAEAEKIKAAL K K L I K A 0 0 0 0 0 1 2 0 0 1 2 2 0 0 1 1 0 0 0 1 0 0 11 1 1282.7497 P52815 P52815 163 173 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 2;3 2.1196E-07 162 By MS/MS By MS/MS 6.67 0.471 2 4 4 2 66409000 0 32786000 33623000 7087 913 7381 30191;30192;30193;30194;30195;30196 25502;25503;25504 25504 3 0 17949000 5966200 KLVIIEGDLER HIAEEADRKYEEVARKLVIIEGDLERTEER EVARKLVIIEGDLERTEERAELAESKCSEL R K L E R T 0 1 0 1 0 0 2 1 0 2 2 1 0 0 0 0 0 0 0 1 0 0 11 1 1283.7449 P06753 P06753 169 179 TPM3 Tropomyosin alpha-3 chain yes yes 3 0.024087 50.354 By MS/MS 6 0 1 1 0 0 0 0 7088 450 7382 30197 25505 25505 1 0 0 0 KLVIIESDLER HIAEDADRKYEEVARKLVIIESDLERAEER EVARKLVIIESDLERAEERAELSEGKCAEL R K L E R A 0 1 0 1 0 0 2 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 11 1 1313.7555 P09493 P09493 168 178 TPM1 Tropomyosin alpha-1 chain yes yes 2;3 0.015972 82.261 By MS/MS By matching 5.8 0.4 1 4 3 2 15362000 0 6026900 9335400 + 7089 485 7383 30198;30199;30200;30201;30202 25506;25507 25506 2 0 2022100 1396700 KLVIVSLMELFK SMLMEQDPDVAVTVRKLVIVSLMELFKDIT TVRKLVIVSLMELFKDITPSYKIRPLTEAE R K L F K D 0 0 0 0 0 0 1 0 0 1 3 2 1 1 0 1 0 0 0 2 0 0 12 1 1418.8571 Q8WTT2 Q8WTT2 256 267 NOC3L Nucleolar complex protein 3 homolog yes yes 3 0.0043474 81.431 By MS/MS 2 0 1 1 412590 0 0 412590 7090 1670 7384 30203 25508 25508 1 0 0 93237 KLVLILNK RCPQVEEAIVQSGQKKLVLILNKSDLVPKE IVQSGQKKLVLILNKSDLVPKENLESWLNY K K L N K S 0 0 1 0 0 0 0 0 0 1 3 2 0 0 0 0 0 0 0 1 0 0 8 1 939.64809 Q9BVP2 Q9BVP2 172 179 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.024704 88.904 By MS/MS 3.5 0.5 1 1 2 6627500 0 6627500 0 7091 1917 7385 30204;30205 25509 25509 1 0 2458800 0 KLVPFATELHER DKLGEVSTYTDDLQKKLVPFATELHERLTK LQKKLVPFATELHERLTKDSEKLKEEIRKE K K L E R L 1 1 0 0 0 0 2 0 1 0 2 1 0 1 1 0 1 0 0 1 0 0 12 1 1438.7932 CON__Q32PJ2;P06727 CON__Q32PJ2 79 90 APOA4 Apolipoprotein A-IV no no 2;3 0.00027304 124.33 By MS/MS By matching By MS/MS 6.5 1.32 2 3 1 1 1 4 1 3 41478000 20264000 497240 20717000 + 7092 81;446 7386 30206;30207;30208;30209;30210;30211;30212;30213 25510;25511;25512;25513 25513 4 18825000 226230 2988200 KLVPLDYGEDDKNATK NKFEDEDSDDVPRKRKLVPLDYGEDDKNAT LVPLDYGEDDKNATKGTVNTEEKRKHIKSL R K L T K G 1 0 1 3 0 0 1 1 0 0 2 3 0 0 1 0 1 0 1 1 0 0 16 2 1804.9207 P49756 P49756 711 726 RBM25 RNA-binding protein 25 yes yes 3 1.6352E-05 111.34 By MS/MS 2 0 1 1 5243100 0 5243100 0 7093 866 7387 30214 25514 25514 1 0 2361100 0 KLVWIPSER AVIYNPATQADWTAKKLVWIPSERHGFEAA ADWTAKKLVWIPSERHGFEAASIKEERGDE K K L E R H 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1 1 0 1 0 1 0 0 9 1 1126.6499 P35580 P35580 34 42 MYH10 Myosin-10 yes yes 2 0.0067056 99.136 By MS/MS 1 0 1 1 10269000 0 10269000 0 7094 753 7388 30215 25515 25515 1 0 5019200 0 KLVWVPSDK NFINNPLAQADWAAKKLVWVPSDKSGFEPA ADWAAKKLVWVPSDKSGFEPASLKEEVGEE K K L D K S 0 0 0 1 0 0 0 0 0 0 1 2 0 0 1 1 0 1 0 2 0 0 9 1 1070.6124 P35579 P35579 30 38 MYH9 Myosin-9 yes yes 2 0.00096214 126.24 By MS/MS 1 0 1 1 150360000 0 150360000 0 7095 752 7389 30216 25516;25517 25517 2 0 73492000 0 KLYDIDVAK VDVKANKHQIKQAVKKLYDIDVAKVNTLIR IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K K L A K V 1 0 0 2 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1063.5914 P62750 P62750 115 123 RPL23A 60S ribosomal protein L23a yes yes 2 0.00012224 145.84 By matching By MS/MS By matching 6.17 1.34 1 1 1 2 1 3 1 2 259540000 32363000 58156000 169020000 7096 1031 7390 30217;30218;30219;30220;30221;30222 25518 25518 1 27024000 33393000 29914000 KMDETDASSAVK GNLVYVVNYPKDNKRKMDETDASSAVKVKR NKRKMDETDASSAVKVKRAVQKTSDLIVLG R K M V K V 2 0 0 2 0 0 1 0 0 0 0 2 1 0 0 2 1 0 0 1 0 0 12 1 1280.5918 Q13148 Q13148 84 95 TARDBP TAR DNA-binding protein 43 yes yes 2 0.0002607 135.99 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 5634300 0 3211200 2423000 7097 1224 7391 30223;30224;30225 25519;25520;25521;25522 25519 4 0 951830 337970 KMEDSVGCLETAEEVKR KQIATLHAQVADMKKKMEDSVGCLETAEEV EDSVGCLETAEEVKRKLQKDLEGLSQRHEE K K M K R K 1 1 0 1 1 0 4 1 0 0 1 2 1 0 0 1 1 0 0 2 0 0 17 2 1979.9292 P35579 P35579 1372 1388 MYH9 Myosin-9 yes yes 3 1.691E-05 101.92 By MS/MS 1 0 1 1 4517600 0 4517600 0 7098 752 7392 30226 25523 25523 1 0 2208100 0 KMEEVKEANIR SLCISTKKEVEKMNKKMEEVKEANIRVVSE KMNKKMEEVKEANIRVVSEDFLQDVSASTK K K M I R V 1 1 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 0 1 0 0 11 2 1345.7024 P09874 P09874 442 452 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 0.0054902 85.522 By MS/MS 2 0 1 1 13322000 0 13322000 0 7099 492 7393 30227 25524 25524 1 0 5999300 0 KMNALFEGR RMCPATQKLIEESQRKMNALFEGRRIEFAE IEESQRKMNALFEGRRIEFAEQINKMEARP R K M G R R 1 1 1 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 9 1 1064.5437 Q9H307 Q9H307 262 270 PNN Pinin yes yes 2 0.070534 74.301 By MS/MS 3.5 0.5 1 1 2 4197200 0 4197200 0 7100 1978 7394 30228;30229 25525 25525 1 0 1597200 0 KMQQENMKPQEQLTLEPYER DSTASAEAVFASEVKKMQQENMKPQEQLTL NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K K M E R D 0 1 1 0 0 4 4 0 0 0 2 2 2 0 2 0 1 0 1 0 0 0 20 2 2519.2148 P22087 P22087 285 304 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 3 4.9274E-06 93.776 By MS/MS 6 0 1 1 6089200 0 0 6089200 7101 627 7395 30230 25526 25526 1 0 0 911010 KMTPSYEIR MGDVKNFLYAWCGKRKMTPSYEIRAVGNKN AWCGKRKMTPSYEIRAVGNKNRQKFMCEVQ R K M I R A 0 1 0 0 0 0 1 0 0 1 0 1 1 0 1 1 1 0 1 0 0 0 9 1 1123.5696 Q08211 Q08211 16 24 DHX9 ATP-dependent RNA helicase A yes yes 2 0.011421 94.309 By MS/MS 1 0 1 1 3654900 0 3654900 0 7102 1182 7396 30231 25527 25527 1 0 1786400 0 KMVDPEKPQLGMIDR GCMEKIEKGQVRLSKKMVDPEKPQLGMIDR KMVDPEKPQLGMIDRWYHPGCFVKNREELG K K M D R W 0 1 0 2 0 1 1 1 0 1 1 2 2 0 2 0 0 0 0 1 0 0 15 2 1755.9012 P09874 P09874 142 156 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 0.000133 138.28 By MS/MS By MS/MS 1.71 0.452 2 5 1 6 149600000 0 13331000 136270000 7103 492 7397;7398 30232;30233;30234;30235;30236;30237;30238 25528;25529;25530;25531;25532;25533 25530 206 6 0 6003300 30561000 KMVNDAEPDTK QSSNSESKKKKKKKRKMVNDAEPDTKKAKT KKKRKMVNDAEPDTKKAKTENKGKSEEESA R K M T K K 1 0 1 2 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 1 0 0 11 1 1246.5864 Q9NVP1 Q9NVP1 116 126 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.034601 81.771 By MS/MS 3 0 1 1 0 0 0 0 7104 2069 7399 30239 25534 25534 1 0 0 0 KNDMDEPPSGDFGGDEEK QLELHCQVMFRNYQRKNDMDEPPSGDFGGD MDEPPSGDFGGDEEKSRKRKNKDPKFAEME R K N E K S 0 0 1 4 0 0 3 3 0 0 0 2 1 1 2 1 0 0 0 0 0 0 18 1 1965.7898 Q14839 Q14839 577 594 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 6.3601E-05 96.562 By MS/MS 1 0 1 1 12675000 0 0 12675000 7105 1321 7400 30240 25535 25535 1 0 0 2731000 KNGPLEVAGAAVSAGHGLPAK KGGKEFVEAVLELRKKNGPLEVAGAAVSAG VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K K N A K F 5 0 1 0 0 0 1 4 1 0 2 2 0 0 2 1 0 0 0 2 0 0 21 1 1943.0589 O75367 O75367 251 271 H2AFY Core histone macro-H2A.1 yes yes 3 5.2099E-07 97.589 By MS/MS By MS/MS 5.2 0.748 1 2 2 3 2 41708000 0 12500000 29208000 7106 253 7401 30241;30242;30243;30244;30245 25536;25537;25538 25536 3 0 3787500 4104200 KNHEEEISTLR EMQIEGLKEELAYLKKNHEEEISTLRGQVG AYLKKNHEEEISTLRGQVGGQVSVEVDSAP K K N L R G 0 1 1 0 0 0 3 0 1 1 1 1 0 0 0 1 1 0 0 0 0 0 11 1 1354.6841 CON__P08727;P08727 CON__P08727 216 226 KRT19 Keratin, type I cytoskeletal 19 yes no 3 0.00050395 106.67 By MS/MS 5.5 0.5 1 1 2 5219500 0 5219500 0 + 7107 51 7402 30246;30247 25539 25539 1 0 1526600 0 KNHEEEMKDLR EMQIESLTEELAYLKKNHEEEMKDLRNVST AYLKKNHEEEMKDLRNVSTGDVNVEMNAAP K K N L R N 0 1 1 1 0 0 3 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 11 2 1427.6827 P13645;CON__P13645 P13645 285 295 KRT10 Keratin, type I cytoskeletal 10 yes no 3 0.00020669 117.79 By MS/MS By MS/MS 6.33 2.36 1 1 1 2 1 1 1 1 3 6 34527000 0 5216400 29310000 + 7108 56 7403 30248;30249;30250;30251;30252;30253;30254;30255;30256 25540;25541;25542;25543 25543 4 0 2101900 8169000 KNHEEEMLALR EMQIEGLKEELAYLRKNHEEEMLALRGQTG AYLRKNHEEEMLALRGQTGGDVNVEMDAAP R K N L R G 1 1 1 0 0 0 3 0 1 0 2 1 1 0 0 0 0 0 0 0 0 0 11 1 1368.682 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P08779 253 263 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 8.0882E-20 187.42 By MS/MS By MS/MS By MS/MS 4.92 2.62 2 1 1 1 3 2 1 2 6 2 5 160820000 97155000 2802600 60864000 + 7109 53 7404 30257;30258;30259;30260;30261;30262;30263;30264;30265;30266;30267;30268;30269 25544;25545;25546;25547;25548;25549;25550;25551;25552;25553;25554 25549 11 74514000 809100 10303000 KNHEEEMNALR EMQIESLKEELAYLKKNHEEEMNALRGQVG AYLKKNHEEEMNALRGQVGGDVNVEMDAAP K K N L R G 1 1 2 0 0 0 3 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 11 1 1369.6408 CON__P02533;P02533;Q04695;CON__Q04695;CON__Q6IFX2 CON__P02533 251 261 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 3 2.2836E-10 117.14 By MS/MS By MS/MS By MS/MS 4.15 2.66 2 2 2 2 3 1 1 6 3 4 26772000 12607000 7586000 6578900 + 7110 35;73;91 7405 30270;30271;30272;30273;30274;30275;30276;30277;30278;30279;30280;30281;30282 25555;25556;25557;25558;25559;25560 25559 6 9220900 2261600 3963800 KNHKEEMSQLTGQNSGDVNVEINVAPGK EMQYETLQEELMALKKNHKEEMSQLTGQNS NSGDVNVEINVAPGKDLTKTLNDMRQEYEQ K K N G K D 1 0 4 1 0 2 3 3 1 1 1 3 1 0 1 2 1 0 0 3 0 0 28 2 3022.4778 P35527;CON__P35527 P35527 290 317 KRT9 Keratin, type I cytoskeletal 9 yes no 4;5 1.7725E-39 152.88 By MS/MS By matching 8.5 0.5 2 2 3 1 50619000 41201000 0 9418100 + 7111 750 7406 30283;30284;30285;30286 25561;25562;25563 25562 3 32110000 0 3008500 KNHTHQQDIDDLKR QILDKATEYIQYMRRKNHTHQQDIDDLKRQ RKNHTHQQDIDDLKRQNALLEQQVRALEKA R K N K R Q 0 1 1 3 0 2 0 0 2 1 1 2 0 0 0 0 1 0 0 0 0 0 14 2 1746.8761 P61244 P61244 77 90 MAX Protein max yes yes 4 0.044975 48.14 By MS/MS 8 0.816 1 1 1 3 2327500 0 0 2327500 7112 987 7407 30287;30288;30289 25564 25564 1 0 0 419730 KNIFLLFK GTVDGPRNELSRVSKKNIFLLFKKLCSFRY ELSRVSKKNIFLLFKKLCSFRYRRDLLRLS K K N F K K 0 0 1 0 0 0 0 0 0 1 2 2 0 2 0 0 0 0 0 0 0 0 8 1 1021.6324 P55265 P55265 1159 1166 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.0066014 103.91 By MS/MS 2 0 1 1 3630100 0 0 3630100 7113 941 7408 30290 25565 25565 1 0 0 820340 KNILLTIGSYK AYLKAMLSTGFKIPKKNILLTIGSYKNKSE KIPKKNILLTIGSYKNKSELLPTVRLLESL K K N Y K N 0 0 1 0 0 0 0 1 0 2 2 2 0 0 0 1 1 0 1 0 0 0 11 1 1248.7442 P27708 P27708 1313 1323 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.0039787 108.26 By MS/MS 1 0 1 1 2981800 0 2981800 0 7114 681 7409 30291 25566 25566 1 0 1457500 0 KNLQYYDISAK KDRKVKAKSIVFHRKKNLQYYDISAKSNYN FHRKKNLQYYDISAKSNYNFEKPFLWLARK K K N A K S 1 0 1 1 0 1 0 0 0 1 1 2 0 0 0 1 0 0 2 0 0 0 11 1 1341.6929 P62826 P62826 142 152 RAN GTP-binding nuclear protein Ran yes yes 2 0.0033971 109.11 By matching By MS/MS 7 0 2 1 1 14684000 0 4564500 10119000 7115 1035 7410 30292;30293 25567 25567 1 0 2620900 1795600 KNPASLPLTQAALK SDGKKQEGPATQVSKKNPASLPLTQAALKV KKNPASLPLTQAALKVLAQKASEAQPPVAR K K N L K V 3 0 1 0 0 1 0 0 0 0 3 2 0 0 2 1 1 0 0 0 0 0 14 1 1450.8508 Q13428 Q13428 1065 1078 TCOF1 Treacle protein yes yes 3 0.010219 62.685 By MS/MS 2 0.816 1 1 1 3 16826000 0 0 16826000 7116 1247 7411 30294;30295;30296 25568;25569 25568 2 0 0 3629800 KNPEVPVNFAEFSK AYAFFVQTCREEHKKKNPEVPVNFAEFSKK KKNPEVPVNFAEFSKKCSERWKTMSGKEKS K K N S K K 1 0 2 0 0 0 2 0 0 0 0 2 0 2 2 1 0 0 0 2 0 0 14 1 1604.8199 O15347 O15347 30 43 HMGB3 High mobility group protein B3 yes yes 2;3 0.0027911 105.65 By matching By MS/MS 7 0 4 2 2 71194000 0 12477000 58717000 7117 176 7412 30297;30298;30299;30300 25570;25571 25570 2 0 7164500 10419000 KNPLPPSVGVVDK NAAGKQLRKESQKDRKNPLPPSVGVVDKKE DRKNPLPPSVGVVDKKEETQPPVALKKEGI R K N D K K 0 0 1 1 0 0 0 1 0 0 1 2 0 0 3 1 0 0 0 3 0 0 13 1 1348.7715 Q8NC51 Q8NC51 79 91 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.00021642 111.31 By MS/MS By matching 4.75 0.433 1 3 3 1 16571000 0 12919000 3651700 7118 1630 7413 30301;30302;30303;30304 25572;25573;25574 25574 3 0 3937500 509350 KNPLPPSVGVVDKK NAAGKQLRKESQKDRKNPLPPSVGVVDKKE RKNPLPPSVGVVDKKEETQPPVALKKEGIR R K N K K E 0 0 1 1 0 0 0 1 0 0 1 3 0 0 3 1 0 0 0 3 0 0 14 2 1476.8664 Q8NC51 Q8NC51 79 92 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.000179 143.93 By matching By MS/MS By MS/MS 3.5 0.957 1 2 2 1 1 2 3 76123000 1755100 22571000 51796000 7119 1630 7414 30305;30306;30307;30308;30309;30310 25575;25576;25577;25578;25579;25580 25575 6 2114600 7598300 8308100 KNQLELLR KRKFQPLFGDFAAEKKNQLELLRVMNSKKP GDFAAEKKNQLELLRVMNSKKPQLDVTRAT K K N L R V 0 1 1 0 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 1 1012.6029 Q15050 Q15050 266 273 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0099606 98.997 By MS/MS By MS/MS 5 0 2 1 1 25793000 0 12417000 13375000 7120 1337 7415 30311;30312 25581;25582 25582 2 0 3200800 1865600 KNSLISSLEEEVSILNR EWKAQVARGRQEAERKNSLISSLEEEVSIL SLISSLEEEVSILNRQVLEKEGESKELKRL R K N N R Q 0 1 2 0 0 0 3 0 0 2 3 1 0 0 0 4 0 0 0 1 0 0 17 1 1930.0371 Q14980 Q14980 1223 1239 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 3.7127E-14 178.47 By MS/MS 1.5 0.5 1 1 2 9355800 0 0 9355800 7121 1327 7416 30313;30314 25583 25583 1 0 0 2020900 KNVSINTVTYEWAPPVQNQALAR YKRNVMILTNPVAAKKNVSINTVTYEWAPP TYEWAPPVQNQALARQYMQMLPKEKQPVAG K K N A R Q 3 1 3 0 0 2 1 0 0 1 1 1 0 0 2 1 2 1 1 3 0 0 23 1 2598.3554 Q9UGI8 Q9UGI8 102 124 TES Testin yes yes 3 1.9642E-11 103.71 By MS/MS 5 0 1 1 4984600 0 4984600 0 7122 2143 7417 30315 25584 25584 1 0 1284900 0 KPAAVLKPSDWEK AEDYIFKAVMLPGARKPAAVLKPSDWEKSS ARKPAAVLKPSDWEKSSNGRQWKPQLGFNR R K P E K S 2 0 0 1 0 0 1 0 0 0 1 3 0 0 2 1 0 1 0 1 0 0 13 2 1467.8086 Q9H0D6 Q9H0D6 776 788 XRN2 5-3 exoribonuclease 2 yes yes 3 0.05756 51.009 By MS/MS 2 0.816 1 1 1 3 20305000 0 0 20305000 7123 1960 7418 30316;30317;30318 25585 25585 1 0 0 4453300 KPALELLHYLK VMQVKTFSEACLMVRKPALELLHYLKNTSF LMVRKPALELLHYLKNTSFAYPAIRYLLYG R K P L K N 1 0 0 0 0 0 1 0 1 0 4 2 0 0 1 0 0 0 1 0 0 0 11 1 1323.7915 P51398 P51398 103 113 DAP3 28S ribosomal protein S29, mitochondrial yes yes 3 0.022414 60.509 By MS/MS 5 0 1 1 5993200 0 0 5993200 7124 892 7419 30319 25586 25586 1 0 0 835950 KPALGFYDTSEENYQALDADFR RKRGVDYNAEIPFEKKPALGFYDTSEENYQ DTSEENYQALDADFRKLRQQDLDGELRSEK K K P F R K 3 1 1 3 0 1 2 1 0 0 2 1 0 2 1 1 1 0 2 0 0 0 22 1 2549.171 Q99459 Q99459 219 240 CDC5L Cell division cycle 5-like protein yes yes 3 0.039364 36.677 By MS/MS 2 0 1 1 3714800 0 0 3714800 7125 1843 7420 30320 25587 25587 0 0 0 839460 KPALGFYDTSEENYQALDADFRK RKRGVDYNAEIPFEKKPALGFYDTSEENYQ TSEENYQALDADFRKLRQQDLDGELRSEKE K K P R K L 3 1 1 3 0 1 2 1 0 0 2 2 0 2 1 1 1 0 2 0 0 0 23 2 2677.266 Q99459 Q99459 219 241 CDC5L Cell division cycle 5-like protein yes yes 4 1.3823E-14 112.85 By MS/MS By MS/MS 2 0 2 1 1 18939000 0 7101800 11838000 7126 1843 7421 30321;30322 25588;25589 25588 2 0 3198000 2675100 KPALQSSVVATSK RESRQESDPEDDDVKKPALQSSVVATSKER VKKPALQSSVVATSKERTRRDLIQDQNMDE K K P S K E 2 0 0 0 0 1 0 0 0 0 1 2 0 0 1 3 1 0 0 2 0 0 13 1 1314.7507 Q9H307 Q9H307 109 121 PNN Pinin yes yes 2 0.0015328 116.24 By MS/MS 2 0.816 1 1 1 3 10622000 0 0 10622000 7127 1978 7422 30323;30324;30325 25590;25591 25590 2 0 0 2224600 KPALVSTVEGGQDPK VLCLSQSEGRVLLCRKPALVSTVEGGQDPK KPALVSTVEGGQDPKNFSEIHPGMLLIGFV R K P P K N 1 0 0 1 0 1 1 2 0 0 1 2 0 0 2 1 1 0 0 2 0 0 15 1 1524.8148 Q14690 Q14690 707 721 PDCD11 Protein RRP5 homolog yes yes 2;3 0.00055358 138.77 By MS/MS By MS/MS 1.33 0.471 4 2 3 3 93873000 0 31573000 62300000 7128 1314 7423 30326;30327;30328;30329;30330;30331 25592;25593;25594;25595;25596 25596 5 0 15213000 13509000 KPANDITSQLEINFGDLGR EEAHAEDSVMDHHFRKPANDITSQLEINFG DITSQLEINFGDLGRPGRGGRGGRGGRGRG R K P G R P 1 1 2 2 0 1 1 2 0 2 2 1 0 1 1 1 1 0 0 0 0 0 19 1 2087.0647 Q8NC51 Q8NC51 346 364 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 3.3047E-261 328.41 By MS/MS 5 1.1 2 2 1 5 126360000 0 0 126360000 7129 1630 7424 30332;30333;30334;30335;30336 25597;25598;25599 25597 3 0 0 20207000 KPASGPGAVVRPPK KKKRFWKSKAREVSKKPASGPGAVVRPPKA KKPASGPGAVVRPPKAPEDFSQNWKALQEW K K P P K A 2 1 0 0 0 0 0 2 0 0 0 2 0 0 4 1 0 0 0 2 0 0 14 2 1359.7987 Q9GZR2 Q9GZR2 48 61 REXO4 RNA exonuclease 4 yes yes 3 0.00097941 95.981 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 7154800 0 2417700 4737000 7130 1951 7425 30337;30338;30339 25600;25601 25600 2 0 802360 820210 KPATSYVR GKGVVVVIKRRSGQRKPATSYVRTTINKNA KRRSGQRKPATSYVRTTINKNARATLSSIR R K P V R T 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 0 0 8 1 920.50797 P46779 P46779 72 79 RPL28 60S ribosomal protein L28 yes yes 2 0.042148 81.119 By MS/MS 7 0.816 1 1 1 3 2366300 0 0 2366300 7131 830 7426 30340;30341;30342 25602 25602 1 0 0 403430 KPDTIEVQQMK LALCMGNHELYMRRRKPDTIEVQQMKAQAR MRRRKPDTIEVQQMKAQAREEKHQKQMERA R K P M K A 0 0 0 1 0 2 1 0 0 1 0 2 1 0 1 0 1 0 0 1 0 0 11 1 1315.6806 P15311;P26038;P35241 P26038 296 306 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2 0.0047639 107.11 By MS/MS 3 0 1 1 3844800 0 3844800 0 7132 664;569;742 7427 30343 25603 25603 1 0 1639000 0 KPEDRPNTSEILR FDKKEKTLLQKLLSKKPEDRPNTSEILRTL SKKPEDRPNTSEILRTLTVWKKSPEKNERH K K P L R T 0 2 1 1 0 0 2 0 0 1 1 1 0 0 2 1 1 0 0 0 0 0 13 2 1553.8162 P19525 P19525 522 534 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 3 0.00059217 109 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 73885000 0 14041000 59844000 7133 609 7428 30344;30345;30346 25604;25605;25606 25605 3 0 5985800 11559000 KPEDWDERPK PPVNPSREIEDPEDRKPEDWDERPKIPDPE DPEDRKPEDWDERPKIPDPEAVKPDDWDED R K P P K I 0 1 0 2 0 0 2 0 0 0 0 2 0 0 2 0 0 1 0 0 0 0 10 2 1298.6255 P27824 P27824 283 292 CANX Calnexin yes yes 3 0.053012 55.754 By MS/MS 4 1.41 1 1 1 1 1 5 7739600 0 0 7739600 7134 684 7429 30347;30348;30349;30350;30351 25607 25607 1 0 0 1371900 KPELVISYLPPGMASK ERIVRGSNKIKFVVKKPELVISYLPPGMAS PELVISYLPPGMASKINTKALQSPKRPRSP K K P S K I 1 0 0 0 0 0 1 1 0 1 2 2 1 0 3 2 0 0 1 1 0 0 16 1 1728.9484 P78347 P78347 645 660 GTF2I General transcription factor II-I yes yes 3 0.038444 39.385 By MS/MS 3 0.816 1 1 1 3 9567000 0 0 9567000 7135 1085 7430 30352;30353;30354 25608 25608 1 0 0 1922600 KPEVASWVHFDNLK LETEETVPETDVETKKPEVASWVHFDNLKG KKPEVASWVHFDNLKGGKQLNKYDPFSRNP K K P L K G 1 0 1 1 0 0 1 0 1 0 1 2 0 1 1 1 0 1 0 2 0 0 14 1 1668.8624 Q03701 Q03701 675 688 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 0.00021996 108.06 By MS/MS 2 0 1 1 22605000 0 0 22605000 7136 1157 7431 30355 25609 25609 1 0 0 5108400 KPFNFLPMQINTNK RATAANNKRQLSENRKPFNFLPMQINTNKS RKPFNFLPMQINTNKSKDASTNPPNRETIG R K P N K S 0 0 3 0 0 1 0 0 0 1 1 2 1 2 2 0 1 0 0 0 0 0 14 1 1690.8865 Q15154 Q15154 139 152 PCM1 Pericentriolar material 1 protein yes yes 2;3 0.00028636 152.67 By MS/MS By MS/MS 1 0 3 1 2 20522000 0 3526800 16995000 7137 1349 7432 30356;30357;30358 25610;25611;25612 25611 3 0 1723800 3661800 KPFPLVKPLPGEEPLFTIPHTQEAFR ______________________________ EEPLFTIPHTQEAFRTREEYEARLERYSER R K P F R T 1 1 0 0 0 1 3 1 1 1 3 2 0 3 6 0 2 0 0 1 0 0 26 2 2987.6273 Q9UIG0 Q9UIG0 8 33 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 4;5 2.0105E-20 118.54 By MS/MS 1.5 0.5 2 2 4 46512000 0 0 46512000 7138 2164 7433 30359;30360;30361;30362 25613;25614 25613 2 0 0 10098000 KPGAGDTAFPGTGGFSATFDYQQAFGNSTGGFDGQAR KKGPGLAVQSGDKTKKPGAGDTAFPGTGGF QAFGNSTGGFDGQARQPTPPFFGRDRSPLR K K P A R Q 5 1 1 3 0 3 0 9 0 0 0 1 0 5 2 2 4 0 1 0 0 0 37 1 3684.6506 Q96PK6 Q96PK6 167 203 RBM14 RNA-binding protein 14 yes yes 3 4.0649E-58 130.84 By MS/MS 3 0 1 1 8950200 0 0 8950200 7139 1818 7434 30363 25615 25615 1 0 0 1735900 KPGDLSDELR LYYEGKEFETRLKEKKPGDLSDELRISLGM RLKEKKPGDLSDELRISLGMPVGPNAHKVP K K P L R I 0 1 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 1 1128.5775 Q13435 Q13435 605 614 SF3B2 Splicing factor 3B subunit 2 yes yes 2 0.04088 81.099 By matching By MS/MS 3 0.816 1 1 1 1 2 17573000 0 9149800 8423100 7140 1248 7435 30364;30365;30366 25616 25616 1 0 4120300 1591200 KPGGFDISLFYR DLRDTGIFLDLMHLKKPGGFDISLFYRDII HLKKPGGFDISLFYRDIISIAEDEDLRVHF K K P Y R D 0 1 0 1 0 0 0 2 0 1 1 1 0 2 1 1 0 0 1 0 0 0 12 1 1398.7296 P12956 P12956 207 218 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 8.9667E-05 146.11 By MS/MS By MS/MS 3 0.577 1 4 1 4 2 162900000 0 47323000 115580000 7141 541 7436 30367;30368;30369;30370;30371;30372 25617;25618;25619;25620;25621;25622;25623 25623 7 0 20033000 22417000 KPGQSFQEQVEHYR VMKFQDELESGKRPKKPGQSFQEQVEHYRD KKPGQSFQEQVEHYRDKLLQREKEKELERE K K P Y R D 0 1 0 0 0 3 2 1 1 0 0 1 0 1 1 1 0 0 1 1 0 0 14 1 1731.8329 O15042 O15042 866 879 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 3 6.6066E-05 148.08 By matching By MS/MS 1.33 0.471 2 1 1 2 33334000 0 2475400 30858000 7142 163 7437 30373;30374;30375 25624;25625 25625 1 0 1209900 6871700 KPGSVVAAAAAEAK KAEADPQAIPKKRGRKPGSVVAAAAAEAKK RKPGSVVAAAAAEAKKKAVKESSIRSVQET R K P A K K 6 0 0 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 2 0 0 14 1 1268.7089 P51608 P51608 271 284 MECP2 Methyl-CpG-binding protein 2 yes yes 2;3 0.0011252 116.71 By MS/MS By MS/MS 3.5 0.5 2 2 1 3 15254000 0 1877000 13377000 7143 896 7438 30376;30377;30378;30379 25626;25627;25628;25629 25627 4 0 800180 2466900 KPGYHAPVALLNDIPQSTEQYDPFAEHRPPK DDDDYSSSTSLLGQKKPGYHAPVALLNDIP STEQYDPFAEHRPPKIADREDEYKKHRRTM K K P P K I 3 1 1 2 0 2 2 1 2 1 2 2 0 1 6 1 1 0 2 1 0 0 31 2 3514.7634 O75533 O75533 81 111 SF3B1 Splicing factor 3B subunit 1 yes yes 4;5 1.0089E-25 107.76 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 58892000 0 14743000 44148000 7144 270 7439 30380;30381;30382;30383 25630;25631;25632;25633 25633 4 0 6639000 9897900 KPHIIIATPGR VGGIDSMSQSLALAKKPHIIIATPGRLIDH ALAKKPHIIIATPGRLIDHLENTKGFNLRA K K P G R L 1 1 0 0 0 0 0 1 1 3 0 1 0 0 2 0 1 0 0 0 0 0 11 1 1201.7295 Q9H0S4 Q9H0S4 142 152 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 3 5.6974E-05 125.23 By MS/MS By MS/MS 5 0 2 1 1 37324000 0 16628000 20695000 7145 1964 7440 30384;30385 25634;25635 25634 2 0 4286300 2886600 KPHIYYGSLEEK TKTKAPDDLVAPVVKKPHIYYGSLEEKERE VVKKPHIYYGSLEEKERERLAKGESGILGK K K P E K E 0 0 0 0 0 0 2 1 1 1 1 2 0 0 1 1 0 0 2 0 0 0 12 1 1462.7456 O43172 O43172 27 38 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 0.0023112 89.189 By MS/MS 3.5 0.5 1 1 2 18623000 0 0 18623000 7146 189 7441 30386;30387 25636 25636 1 0 0 3196300 KPIIGILMQK AASLELSRPHGDTAKKPIIGILMQKCRNKV GDTAKKPIIGILMQKCRNKVMKNYGRYYIA K K P Q K C 0 0 0 0 0 1 0 1 0 3 1 2 1 0 1 0 0 0 0 0 0 0 10 1 1139.71 Q92820 Q92820 33 42 GGH Gamma-glutamyl hydrolase yes yes 2 0.0070932 100.02 By MS/MS 8 1.41 1 1 1 1 1 5 8969100 8969100 0 0 7147 1724 7442 30388;30389;30390;30391;30392 25637 25637 1 11329000 0 0 KPIVPQKEPSPLLEK SLSAKVVDDEIYYFRKPIVPQKEPSPLLEK KPIVPQKEPSPLLEKKIQLLEAKFAELEGG R K P E K K 0 0 0 0 0 1 2 0 0 1 2 3 0 0 4 1 0 0 0 1 0 0 15 2 1702.0029 Q86U86 Q86U86 1293 1307 PBRM1 Protein polybromo-1 yes yes 3 0.010862 63.923 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41345000 0 3382000 37963000 7148 1545 7443 30393;30394;30395 25638;25639 25639 2 0 1653100 8235200 KPKPQINQWK IRLRDKGKVKPVHPKKPKPQINQWKQEKQQ PVHPKKPKPQINQWKQEKQQLSSEQVSRKK K K P W K Q 0 0 1 0 0 2 0 0 0 1 0 3 0 0 2 0 0 1 0 0 0 0 10 2 1265.7244 Q9NW13 Q9NW13 696 705 RBM28 RNA-binding protein 28 yes yes 3 0.054108 55.461 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 6283000 0 3264100 3019000 7149 2075 7444 30396;30397 25640;25641 25640 2 0 1469900 585530 KPLDGEYFTLQIR RALPNNTSSSPQPKKKPLDGEYFTLQIRGR KKKPLDGEYFTLQIRGRERFEMFRELNEAL K K P I R G 0 1 0 1 0 1 1 1 0 1 2 1 0 1 1 0 1 0 1 0 0 0 13 1 1578.8406 P04637 P04637 321 333 TP53 Cellular tumor antigen p53 yes yes 3 0.0011157 96.464 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 10100000 0 5858300 4242100 7150 416 7445 30398;30399 25642;25643 25642 2 0 1510100 692870 KPLFHGDSEIDQLFR DIWSIGTIFAELATKKPLFHGDSEIDQLFR KPLFHGDSEIDQLFRIFRALGTPNNEVWPE K K P F R I 0 1 0 2 0 1 1 1 1 1 2 1 0 2 1 1 0 0 0 0 0 0 15 1 1800.9159 P06493 P06493 201 215 CDK1 Cyclin-dependent kinase 1 yes yes 3 0.00011471 102.29 By MS/MS 6 0 1 1 2616200 0 2616200 0 7151 443 7446 30400 25644 25644 1 0 905630 0 KPLLESGTLGTK VDARMYMDRRCVYYRKPLLESGTLGTKGNV YYRKPLLESGTLGTKGNVQVVIPFLTESYS R K P T K G 0 0 0 0 0 0 1 2 0 0 3 2 0 0 1 1 2 0 0 0 0 0 12 1 1242.7184 P22314 P22314 593 604 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 3 0.069556 35.763 By MS/MS 2 0 1 1 3421000 0 0 3421000 7152 630 7447 30401 25645 25645 1 0 0 773090 KPLPDHVSIVEPK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKKPLPDHVSIVEPKDEILPTTPISEQKGG K K P P K D 0 0 0 1 0 0 1 0 1 1 1 2 0 0 3 1 0 0 0 2 0 0 13 1 1457.8242 P23396 P23396 202 214 RPS3 40S ribosomal protein S3 yes yes 2;3 1.9655E-59 174.21 By MS/MS By MS/MS 6.18 1.19 1 1 6 2 1 7 4 313480000 0 75334000 238140000 7153 641 7448 30402;30403;30404;30405;30406;30407;30408;30409;30410;30411;30412 25646;25647;25648;25649;25650;25651;25652;25653;25654;25655;25656;25657;25658;25659;25660;25661;25662;25663 25661 18 0 31346000 36264000 KPLPDHVSIVEPKDEILPTTPISEQK KIMLPWDPTGKIGPKKPLPDHVSIVEPKDE PKDEILPTTPISEQKGGKPEPPAMPQPVPT K K P Q K G 0 0 0 2 0 1 3 0 1 3 2 3 0 0 5 2 2 0 0 2 0 0 26 2 2909.575 P23396 P23396 202 227 RPS3 40S ribosomal protein S3 yes yes 4 1.0117E-28 141.36 By MS/MS 6 0 1 1 53211000 0 53211000 0 7154 641 7449 30413 25664;25665 25665 2 0 18420000 0 KPLTPYFR PYKGKKLKKHPDFPKKPLTPYFRFFMEKRA KHPDFPKKPLTPYFRFFMEKRAKYAKLHPE K K P F R F 0 1 0 0 0 0 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 0 8 1 1020.5757 P17480 P17480 114 121 UBTF Nucleolar transcription factor 1 yes yes 2 9.4237E-05 150.17 By MS/MS By MS/MS 3.25 1.09 1 2 1 1 3 73495000 0 7171300 66324000 7155 584 7450 30414;30415;30416;30417 25666;25667;25668 25667 3 0 3057100 13101000 KPLTSNCTIQIATPGK GQVHLFEHILNGYCKKPLTSNCTIQIATPG PLTSNCTIQIATPGKGKKSTPKPIPILAAG K K P G K G 1 0 1 0 1 1 0 1 0 2 1 2 0 0 2 1 3 0 0 0 0 0 16 1 1727.924 Q15061 Q15061 309 324 WDR43 WD repeat-containing protein 43 yes yes 3 0.014066 51.359 By MS/MS 3 0 1 1 4647800 0 0 4647800 7156 1343 7451 30418 25669 25669 1 0 0 901460 KPLTSSSAAPQRPISTQR AVAPSLVAPALNKPKKPLTSSSAAPQRPIS TSSSAAPQRPISTQRTAAAPKAGPGVVRKN K K P Q R T 2 2 0 0 0 2 0 0 0 1 1 1 0 0 3 4 2 0 0 0 0 0 18 2 1924.049 Q15691 Q15691 151 168 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 3;4 1.292E-06 109.03 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 54898000 0 16100000 38798000 7157 1379 7452 30419;30420;30421;30422;30423;30424;30425;30426 25670;25671;25672;25673;25674;25675 25674 6 0 6246300 5957800 KPMSLASGLVPAAPPK LPKQPAPTTIGGLNKKPMSLASGLVPAAPP PMSLASGLVPAAPPKRPAVASARPSILPSK K K P P K R 3 0 0 0 0 0 0 1 0 0 2 2 1 0 4 2 0 0 0 1 0 0 16 1 1562.8854 P27816 P27816 739 754 MAP4 Microtubule-associated protein 4 yes yes 2;3 8.5705E-05 113.54 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 66149000 0 6176000 59973000 7158 683 7453 30427;30428;30429;30430;30431;30432 25676;25677;25678;25679;25680;25681 25678 6 0 2781100 13024000 KPNEGADGQWK AIQNKDRAKVEFNIRKPNEGADGQWKKGFV FNIRKPNEGADGQWKKGFVLHKSKSEEAHA R K P W K K 1 0 1 1 0 1 1 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 11 1 1228.5836 Q8NC51 Q8NC51 310 320 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 0.00091844 119.22 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 5 2 8060000 0 5824100 2235900 7159 1630 7454 30433;30434;30435;30436;30437;30438;30439 25682;25683;25684;25685 25682 4 0 1659500 411060 KPPGAQLGFNIR NNELTQFLPRTITLKKPPGAQLGFNIRGGK TLKKPPGAQLGFNIRGGKASQLGIFISKVI K K P I R G 1 1 1 0 0 1 0 2 0 1 1 1 0 1 2 0 0 0 0 0 0 0 12 1 1296.7303 Q5EBL8 Q5EBL8 52 63 PDZD11 PDZ domain-containing protein 11 yes yes 3 0.036816 50.786 By matching By MS/MS 8 0 2 1 1 6436200 0 2673900 3762300 7160 1435 7455 30440;30441 25686 25686 1 0 1216500 576800 KPPGPPPGPPPPQVVQMYGR LPLLGHGVPRLPPGRKPPGPPPGPPPPQVV PPGPPPPQVVQMYGRKVGFALDLPPRRRDE R K P G R K 0 1 0 0 0 2 0 3 0 0 0 1 1 0 9 0 0 0 1 2 0 0 20 1 2095.1037 Q9Y2W2 Q9Y2W2 198 217 WBP11 WW domain-binding protein 11 yes yes 3 1.8994E-14 151.04 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 26899000 0 10255000 16644000 7161 2253 7456 30442;30443;30444;30445 25687;25688;25689 25689 3 0 4471200 3495800 KPPLLNNADSVQAK SNRFYTLIPHDFGMKKPPLLNNADSVQAKV KKPPLLNNADSVQAKVEMLDNLLDIEVAYS K K P A K V 2 0 2 1 0 1 0 0 0 0 2 2 0 0 2 1 0 0 0 1 0 0 14 1 1493.8202 P09874 P09874 748 761 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 6.6096E-45 221.75 By MS/MS By MS/MS 2.4 1.14 4 5 2 4 8 7 1369000000 0 529790000 839170000 7162 492 7457 30446;30447;30448;30449;30450;30451;30452;30453;30454;30455;30456;30457;30458;30459;30460 25690;25691;25692;25693;25694;25695;25696;25697;25698;25699;25700;25701;25702;25703;25704;25705 25693 16 0 237110000 185330000 KPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGK EKGAHPSGGADDVAKKPPPAPQQPPPPPAP QQHPQQHPQNQAHGKGGHRGGGGGGGKSSS K K P G K G 3 0 1 0 0 8 0 1 4 0 0 2 0 0 13 0 0 0 0 0 0 0 32 1 3492.7664 Q07065 Q07065 35 66 CKAP4 Cytoskeleton-associated protein 4 yes yes 5 1.0006E-12 72.425 By MS/MS By MS/MS 3 0 2 1 1 11402000 0 5261400 6140800 7163 1176 7458 30461;30462 25706;25707;25708 25706 3 0 2242900 1191000 KPPTDEELKETIK SEDSSDDEPLIKKLKKPPTDEELKETIKKL LKKPPTDEELKETIKKLLASANLEEVTMKQ K K P I K K 0 0 0 1 0 0 3 0 0 1 1 3 0 0 2 0 2 0 0 0 0 0 13 2 1526.8192 P35659 P35659 318 330 DEK Protein DEK yes yes 3 0.0044475 83.692 By MS/MS By MS/MS 4.2 0.748 1 2 2 2 3 167060000 0 9214700 157850000 7164 758 7459 30463;30464;30465;30466;30467 25709;25710;25711;25712;25713 25710 5 0 2602100 24703000 KPQLELAMVPHYGGINR DEEEEEEDEEDEEERKPQLELAMVPHYGGI QLELAMVPHYGGINRVRVSWLGEEPVAGVW R K P N R V 1 1 1 0 0 1 1 2 1 1 2 1 1 0 2 0 0 0 1 1 0 0 17 1 1922.0196 Q9BQ67 Q9BQ67 138 154 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 3;4 0.0012931 71.601 By MS/MS By MS/MS 4 0 3 1 2 39875000 0 13805000 26070000 7165 1878 7460 30468;30469;30470 25714;25715;25716 25715 2 0 4581300 4258100 KPSDSVHITNDDER EKNKEAIYSGYIRNRKPSDSVHITNDDERF RKPSDSVHITNDDERFLHHLIIEEKEKDSF R K P E R F 0 1 1 3 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 1 0 0 14 1 1611.7489 A6NHR9 A6NHR9 291 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.0019432 79.337 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 1 4 21172000 0 5074200 16098000 7166 15 7461 30471;30472;30473;30474;30475 25717;25718 25718 2 0 2480200 3374000 KPSISITTESLK GRKRRWGASTATTQKKPSISITTESLKSLI TQKKPSISITTESLKSLIPDIKPLAGQEAV K K P L K S 0 0 0 0 0 0 1 0 0 2 1 2 0 0 1 3 2 0 0 0 0 0 12 1 1302.7395 Q9UKV3 Q9UKV3 861 872 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 4.4813E-08 171.26 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 77424000 0 18944000 58480000 7167 2184 7462 30476;30477;30478;30479;30480 25719;25720;25721;25722 25720 4 0 8210400 12186000 KPSLLYEGFESPTMASVPALQLTPANPPPPEVSNPK LGLGPEAAAPGKRIRKPSLLYEGFESPTMA LTPANPPPPEVSNPKKPGRVTNQLQYLHKV R K P P K K 3 0 2 0 0 1 3 1 0 0 4 2 1 1 9 4 2 0 1 2 0 0 36 1 3802.9492 P25440 P25440 35 70 BRD2 Bromodomain-containing protein 2 yes yes 3 6.9564E-26 89.391 By MS/MS 2 0 1 1 4324400 0 4324400 0 7168 658 7463 30481 25723 25723 1 0 1947400 0 KPTHSQEPQGPEAMER TEEDPSLPALLTQPRKPTHSQEPQGPEAME PTHSQEPQGPEAMERRVQAVREIHPFIDDY R K P E R R 1 1 0 0 0 2 3 1 1 0 0 1 1 0 3 1 1 0 0 0 0 0 16 1 1820.8475 O95602 O95602 1485 1500 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.0046234 62.055 By MS/MS 1 0 1 1 1673000 0 0 1673000 7169 330 7464 30482 25724 25724 1 0 0 360470 KPTLDKPSPETFVK SVLPYFVATKLAKIRKPTLDKPSPETFVKS RKPTLDKPSPETFVKSAIKTVGLQSRTNGY R K P V K S 0 0 0 1 0 0 1 0 0 0 1 3 0 1 3 1 2 0 0 1 0 0 14 2 1585.8716 Q53GQ0 Q53GQ0 244 257 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 3 0.0036269 78.615 By matching By MS/MS 6 0 2 1 1 29067000 0 1739400 27328000 7170 1424 7465 30483;30484 25725 25725 1 0 602110 4088600 KPTTEGFTHDWMVFVR VQVRLELGHRAQLRKKPTTEGFTHDWMVFV PTTEGFTHDWMVFVRGPEQCDIQHFVEKVV K K P V R G 0 1 0 1 0 0 1 1 1 0 0 1 1 2 1 0 3 1 0 2 0 0 16 1 1949.9458 Q03111 Q03111 22 37 MLLT1 Protein ENL yes yes 3 0.021595 53.777 By MS/MS 3 0 1 1 2379800 0 0 2379800 7171 1154 7466 30485 25726 25726 0 0 0 461570 KPVDEYKDCHLAQVPSHTVVAR ADRDQYELLCLDNTRKPVDEYKDCHLAQVP DCHLAQVPSHTVVARSMGGKEDLIWELLNQ R K P A R S 2 1 0 2 1 1 1 0 2 0 1 2 0 0 2 1 1 0 1 4 0 0 22 2 2548.2856 P02787 P02787 252 273 TF Serotransferrin yes yes 3;4;5 4.5109E-22 162.11 By MS/MS 9 0 3 3 93140000 93140000 0 0 7172 399 7467 30486;30487;30488 25727;25728;25729 25727 3 52280000 0 0 KPVEELTEEEK SPEFKDPLIDKEYYRKPVEELTEEEKYVRE EYYRKPVEELTEEEKYVRELKKTQLIKAAP R K P E K Y 0 0 0 0 0 0 5 0 0 0 1 2 0 0 1 0 1 0 0 1 0 0 11 1 1329.6664 Q9Y2R9 Q9Y2R9 53 63 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 2 1.7417E-09 169.82 By MS/MS 7 0 1 1 8438400 0 0 8438400 7173 2248 7468 30489 25730 25730 1 0 0 1497300 KPVEEYANCHLAR LNEKDYELLCLDGTRKPVEEYANCHLARAP TRKPVEEYANCHLARAPNHAVVTRKDKEAC R K P A R A 2 1 1 0 1 0 2 0 1 0 1 1 0 0 1 0 0 0 1 1 0 0 13 1 1585.7671 P02787 P02787 588 600 TF Serotransferrin yes yes 2;3 8.5305E-46 223.36 By MS/MS 9 0 2 2 101150000 101150000 0 0 7174 399 7469 30490;30491 25731;25732 25731 2 56775000 0 0 KPVILEVTPGGFDQINPATNR GRRYNCYKHHWSDSRKPVILEVTPGGFDQI VTPGGFDQINPATNRVLCSYDYRNIEGFVD R K P N R V 1 1 2 1 0 1 1 2 0 2 1 1 0 1 3 0 2 0 0 2 0 0 21 1 2265.2117 O75165 O75165 126 146 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 3 0.00036647 66.732 By MS/MS 1 0 1 1 2990300 0 2990300 0 7175 245 7470 30492 25733 25733 1 0 1461600 0 KPVIVFVPSR MAKPVYHAITKHSPKKPVIVFVPSRKQTRL KHSPKKPVIVFVPSRKQTRLTAIDILTTCA K K P S R K 0 1 0 0 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 3 0 0 10 1 1140.7019 O75643 O75643 1557 1566 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.060506 76.815 By MS/MS 1 0 1 1 103990000 0 0 103990000 7176 277 7471 30493 25734 25734 1 0 0 22407000 KPVSSYLR YLPRWFSSVLASCPKKPVSSYLRFSKEQLP VLASCPKKPVSSYLRFSKEQLPIFKAQNPD K K P L R F 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 2 0 0 1 1 0 0 8 1 948.53927 Q00059 Q00059 52 59 TFAM Transcription factor A, mitochondrial yes yes 2 0.00017292 147.06 By matching By MS/MS By MS/MS 7.5 1.5 2 2 1 1 1 1 4 329260000 3389500 79882000 245990000 7177 1120 7472 30494;30495;30496;30497;30498;30499 25735;25736;25737 25737 3 4513200 45869000 45517000 KPVVTFQAHDGPVYSMVSTDR SLSSALSSEAKEESKKPVVTFQAHDGPVYS QAHDGPVYSMVSTDRHLLSAGDGEVKAWLW K K P D R H 1 1 0 2 0 1 0 1 1 0 0 1 1 1 2 2 2 0 1 4 0 0 21 1 2333.1474 Q86W42 Q86W42 67 87 THOC6 THO complex subunit 6 homolog yes yes 3 0.00016693 70.699 By matching By MS/MS 6 0 2 1 1 11307000 0 1741100 9565500 7178 1555 7473 30500;30501 25738 25738 1 0 602710 1431100 KPWQLQGEVTAQK MNEKIASLEKELLEKKPWQLQGEVTAQKRP EKKPWQLQGEVTAQKRPENSLLEETLHFDH K K P Q K R 1 0 0 0 0 3 1 1 0 0 1 2 0 0 1 0 1 1 0 1 0 0 13 1 1511.8096 O00566 O00566 382 394 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 2;3 1.9106E-57 232.56 By MS/MS By MS/MS 2.67 0.745 3 2 1 2 4 44350000 0 11310000 33040000 7179 129 7474 30502;30503;30504;30505;30506;30507 25739;25740;25741;25742;25743 25740 5 0 5093000 6683400 KPYGVLYK NATVTKVLKDVYALKKPYGVLYKKKNITRP KDVYALKKPYGVLYKKKNITRPFEDQTSLE K K P Y K K 0 0 0 0 0 0 0 1 0 0 1 2 0 0 1 0 0 0 2 1 0 0 8 1 966.55385 Q9H7B2 Q9H7B2 57 64 RPF2 Ribosome production factor 2 homolog yes yes 2 0.00602 105.04 By MS/MS By MS/MS 6 0 2 1 1 32835000 0 11375000 21461000 7180 1991 7475 30508;30509 25744;25745 25744 2 0 3937500 3210700 KPYVLNDLEAEASLPEK AMEVDIEERPKELVRKPYVLNDLEAEASLP YVLNDLEAEASLPEKKGNTLSRDLIDYVRY R K P E K K 2 0 1 1 0 0 3 0 0 0 3 2 0 0 2 1 0 0 1 1 0 0 17 1 1914.9939 Q9Y3C1 Q9Y3C1 90 106 NOP16 Nucleolar protein 16 yes yes 2;3 2.6033E-36 207.31 By MS/MS 7 0 2 2 19224000 0 0 19224000 7181 2268 7476 30510;30511 25746;25747 25747 2 0 0 3411300 KQDFDEDDILKELEELSLEAQGIK QEPQKSKGKKKKEKKKQDFDEDDILKELEE LKELEELSLEAQGIKADRETVAVKPTENNE K K Q I K A 1 0 0 4 0 2 5 1 0 2 4 3 0 1 0 1 0 0 0 0 0 0 24 2 2804.3968 O60841 O60841 50 73 EIF5B Eukaryotic translation initiation factor 5B yes yes 4 1.5656E-15 117.01 By MS/MS 2 0 1 1 6878500 0 0 6878500 7182 236 7477 30512 25748 25748 1 0 0 1554400 KQDPPVTHDLR VNFGRSRSAQEPARKKQDPPVTHDLRVSLE PARKKQDPPVTHDLRVSLEEIYSGCTKKMK K K Q L R V 0 1 0 2 0 1 0 0 1 0 1 1 0 0 2 0 1 0 0 1 0 0 11 1 1304.6837 P25685 P25685 159 169 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 3 0.058333 41.383 By matching By MS/MS 6.33 0.471 2 1 1 2 3241800 0 1957400 1284400 7183 660 7478 30513;30514;30515 25749 25749 1 0 677570 213690 KQEDFMTTMDANEEK TEMPTTLEGAEAAIKKQEDFMTTMDANEEK KQEDFMTTMDANEEKINAVVETGRRLVSDG K K Q E K I 1 0 1 2 0 1 3 0 0 0 0 2 2 1 0 0 2 0 0 0 0 0 15 1 1815.7655 Q01082 Q01082 1210 1224 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 2.6269E-107 264.29 By MS/MS 1 0 2 2 31222000 0 0 31222000 7184 1128 7479 30516;30517 25750;25751 25751 2 0 0 6727300 KQEEETAQLK LLTKQRLVETEEEKRKQEEETAQLKEVFRK EEEKRKQEEETAQLKEVFRKQLEKAEYEIK R K Q L K E 1 0 0 0 0 2 3 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 10 1 1202.6143 B7ZAP0 B7ZAP0 78 87 RABGAP1L Rab GTPase-activating protein 1-like, isoform 10 yes yes 2 0.0016278 111.74 By MS/MS 3 0 1 1 42208000 0 0 42208000 7185 22 7480 30518 25752 25752 1 0 0 8186400 KQEELQQLEQQR EARRRQHEAEEGVRRKQEELQQLEQQRRQQ VRRKQEELQQLEQQRRQQEELLAEENQRLR R K Q Q R R 0 1 0 0 0 5 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1555.7954 Q15149 Q15149 2706 2717 PLEC Plectin yes yes 3 6.2373E-17 132.47 By MS/MS 1 0 1 1 0 0 0 0 7186 1348 7481 30519 25753 25753 1 0 0 0 KQEEQMETEQQNKDEGK MLKGQHEKEAADRKRKQEEQMETEQQNKDE EEQMETEQQNKDEGKKPEVKKVEKKRETSM R K Q G K K 0 0 1 1 0 4 5 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 17 2 2077.9222 O75475 O75475 317 333 PSIP1 PC4 and SFRS1-interacting protein yes yes 3;4 4.2222E-06 141.13 By MS/MS 3 0 2 2 7044900 0 0 7044900 7187 262 7482 30520;30521 25754;25755 25754 2 0 0 1366400 KQEFLEK EAIQRLRDTEEMLSKKQEFLEKKIEQELTA DTEEMLSKKQEFLEKKIEQELTAAKKHGTK K K Q E K K 0 0 0 0 0 1 2 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 7 1 920.49673 Q9H444;P59074 Q9H444 39 45 CHMP4B;CHMP4BP1 Charged multivesicular body protein 4b;Putative charged multivesicular body protein 4B-like protein CHMP4BP1 yes no 2 0.049472 94.114 By matching By MS/MS 6 0 2 1 1 3206200 0 284680 2921500 7188 1981 7483 30522;30523 25756;25757 25756 2 0 98546 437090 KQELAETLANLER QIPDTRRELAELVKRKQELAETLANLERQI KRKQELAETLANLERQIYAFEGSYLEDTQM R K Q E R Q 2 1 1 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 13 1 1513.81 Q9HAF1 Q9HAF1 26 38 MEAF6 Chromatin modification-related protein MEAF6 yes yes 2;3 3.1081E-24 196.67 By matching By MS/MS 7 0 3 1 2 22971000 0 616530 22354000 7189 2001 7484 30524;30525;30526 25758;25759 25758 2 0 354010 3966600 KQELEEICHDLEAR LCAEAEELRARLTAKKQELEEICHDLEARV KKQELEEICHDLEARVEEEEERCQHLQAEK K K Q A R V 1 1 0 1 1 1 4 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 14 1 1768.8414 P35579 P35579 910 923 MYH9 Myosin-9 yes yes 3 0.026962 50.787 By MS/MS 1 0 1 1 4107800 0 4107800 0 7190 752 7485 30527 25760 25760 1 0 2007800 0 KQELEEILHDLESR LFAEAEEMRARLAAKKQELEEILHDLESRV KKQELEEILHDLESRVEEEEERNQILQNEK K K Q S R V 0 1 0 1 0 1 4 0 1 1 3 1 0 0 0 1 0 0 0 0 0 0 14 1 1737.8897 P35580 P35580 917 930 MYH10 Myosin-10 yes yes 2;3 0.00023459 153.38 By MS/MS 1.33 0.471 2 1 3 29779000 0 0 29779000 7191 753 7486 30528;30529;30530 25761;25762 25762 2 0 0 6477600 KQELLEALTK LKEACRAYGLKSGLKKQELLEALTKHFQD_ KSGLKKQELLEALTKHFQD___________ K K Q T K H 1 0 0 0 0 1 2 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1171.6812 P12956 P12956 596 605 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 8.5652E-05 149.95 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 109330000 0 44972000 64362000 7192 541 7487 30531;30532;30533;30534 25763;25764 25764 2 0 19265000 12483000 KQELSEAEQATR THPSQKPLSITVRTKKQELSEAEQATRTMQ RTKKQELSEAEQATRTMQALPYSTVGNSNN K K Q T R T 2 1 0 0 0 2 3 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 12 1 1388.6896 P01024 P01024 428 439 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 0.010208 70.829 By MS/MS 9.5 0.5 1 1 2 2540000 2540000 0 0 7193 371 7488 30535;30536 25765 25765 1 1706800 0 0 KQESTVMVLR SGSSARHMVMQKLLRKQESTVMVLRNMVDP QKLLRKQESTVMVLRNMVDPKDIDDDLEGE R K Q L R N 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 1 0 0 2 0 0 10 1 1189.6489 Q9UHX1 Q9UHX1 458 467 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 0.00051875 139.74 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 13763000 0 6248300 7514500 7194 2158 7489 30537;30538;30539 25766;25767 25766 2 0 2073600 1392300 KQFGAQANVIGPWIQTK LTEEHARQQHNERLRKQFGAQANVIGPWIQ FGAQANVIGPWIQTKMEEIGRISIEMHGTL R K Q T K M 2 0 1 0 0 3 0 2 0 2 0 2 0 1 1 0 1 1 0 1 0 0 17 1 1885.021 P12814 P12814 633 649 ACTN1 Alpha-actinin-1 yes yes 3 0.036486 37.477 By MS/MS 2 0 1 1 2380200 0 2380200 0 7195 540 7490 30540 25768 25768 1 0 1071800 0 KQGGLGPMNIPLVSDPK VDSHFCHLAWVNTPKKQGGLGPMNIPLVSD GGLGPMNIPLVSDPKRTIAQDYGVLKADEG K K Q P K R 0 0 1 1 0 1 0 3 0 1 2 2 1 0 3 1 0 0 0 1 0 0 17 1 1749.9447 Q06830 Q06830 93 109 PRDX1 Peroxiredoxin-1 yes yes 3 0.013794 48.547 By matching By MS/MS 7.33 0.471 2 1 1 2 37964000 0 5964800 32000000 7196 1173 7491 30541;30542;30543 25769 25769 1 0 3425000 5416100 KQINDYVEK SEAFTVNFGDTEEAKKQINDYVEKGTQGKI DTEEAKKQINDYVEKGTQGKIVDLVKELDR K K Q E K G 0 0 1 1 0 1 1 0 0 1 0 2 0 0 0 0 0 0 1 1 0 0 9 1 1135.5873 P01009 P01009 179 187 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.013874 96.143 By MS/MS 9 0 1 1 3331800 3331800 0 0 7197 367 7492 30544 25770 25770 0 1870200 0 0 KQININNPFVFK AVYQTYVNAMNDKIRKQININNPFVFKHIS KIRKQININNPFVFKHISNLKSMDHFDDIG R K Q F K H 0 0 3 0 0 1 0 0 0 2 0 2 0 2 1 0 0 0 0 1 0 0 12 1 1460.814 Q9UKF6 Q9UKF6 295 306 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 3 0.037647 50.354 By MS/MS 3 0 1 1 1577400 0 1577400 0 7198 2178 7493 30545 25771 25771 1 0 672450 0 KQISNLQQSISDAEQR NRVIQRLRSEIDNVKKQISNLQQSISDAEQ QISNLQQSISDAEQRGENALKDAKNKLNDL K K Q Q R G 1 1 1 1 0 4 1 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 16 1 1843.9388 P04264;CON__P04264 P04264 417 432 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0 419.46 By MS/MS By MS/MS By MS/MS 5.62 3.04 4 3 2 4 3 2 3 3 4 4 15 3 14 824210000 557480000 17837000 248890000 + 7199 413 7494 30546;30547;30548;30549;30550;30551;30552;30553;30554;30555;30556;30557;30558;30559;30560;30561;30562;30563;30564;30565;30566;30567;30568;30569;30570;30571;30572;30573;30574;30575;30576;30577 25772;25773;25774;25775;25776;25777;25778;25779;25780;25781;25782;25783;25784;25785;25786;25787;25788;25789;25790;25791;25792;25793;25794;25795;25796;25797;25798;25799;25800 25775 29 514260000 16685000 73243000 KQLADETLLK KDQIAQLEASLAAAKKQLADETLLKVDLEN LAAAKKQLADETLLKVDLENRCQSLTEDLE K K Q L K V 1 0 0 1 0 1 1 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 10 1 1157.6656 P20700 P20700 182 191 LMNB1 Lamin-B1 yes yes 2 0.0033077 107.55 By matching By MS/MS 3 1.41 1 1 1 1 1 1 4 221020000 0 11726000 209300000 7200 619 7495 30578;30579;30580;30581;30582 25801;25802 25802 2 0 5731300 39001000 KQLGQSEGSVSLSLVK DIEAAIGPEAAKIARKQLGQSEGSVSLSLV QLGQSEGSVSLSLVKEQAFGGLTRALALDC R K Q V K E 0 0 0 0 0 2 1 2 0 0 3 2 0 0 0 4 0 0 0 2 0 0 16 1 1658.9203 Q9GZR2 Q9GZR2 218 233 REXO4 RNA exonuclease 4 yes yes 3 8.9082E-05 97.904 By MS/MS 4 0 1 1 10610000 0 10610000 0 7201 1951 7496 30583 25803 25803 1 0 3521100 0 KQLQDEMLR RGQVAKLEAALGEAKKQLQDEMLRRVDAEN ALGEAKKQLQDEMLRRVDAENRLQTMKEEL K K Q L R R 0 1 0 1 0 2 1 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 9 1 1159.6019 P02545 P02545 181 189 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.243E-10 163.99 By matching By MS/MS By MS/MS 3 0.816 1 1 1 1 1 1 118020000 13894000 6197400 97923000 7202 387 7497 30584;30585;30586 25804;25805 25805 2 16741000 2056700 18992000 KQMVIDVLHPGK TIRTRKFMTNRLLQRKQMVIDVLHPGKATV LQRKQMVIDVLHPGKATVPKTEIREKLAKM R K Q G K A 0 0 0 1 0 1 0 1 1 1 1 2 1 0 1 0 0 0 0 2 0 0 12 1 1363.7646 P62847 P62847 21 32 RPS24 40S ribosomal protein S24 yes yes 3 0.0096777 71.632 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 158140000 0 47404000 110740000 7203 1038 7498 30587;30588;30589;30590;30591 25806;25807;25808;25809 25806 4 0 24265000 17829000 KQPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK GDNYNSPVPPKHAGKKQPHGGQQKPSYGSG YNQSPYSNYGPPQGKQKGYNHGQGSYSYSN K K Q G K Q 0 0 2 0 0 10 0 7 2 0 0 3 0 0 5 6 0 0 5 0 0 0 40 2 4407.0078 Q12906 Q12906 734 773 ILF3 Interleukin enhancer-binding factor 3 yes yes 5 1.0137E-80 155.89 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 65156000 0 27466000 37689000 7204 1211 7499 30592;30593;30594 25810;25811;25812 25812 3 0 12281000 8517000 KQPPVSPGTALVGSQK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ QPPVSPGTALVGSQKEPSEVPTPKRPRGRP R K Q Q K E 1 0 0 0 0 2 0 2 0 0 1 2 0 0 3 2 1 0 0 2 0 0 16 1 1592.8886 P17096 P17096 31 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 2;3 3.5144E-06 152.16 By MS/MS By MS/MS 8 1.18 1 4 4 2 2 7 6 305790000 0 172200000 133590000 7205 583 7500 30595;30596;30597;30598;30599;30600;30601;30602;30603;30604;30605;30606;30607 25813;25814;25815;25816;25817;25818;25819;25820;25821;25822;25823;25824;25825;25826;25827;25828;25829 25816 17 0 96480000 27574000 KQPPVSPGTALVGSQKEPSEVPTPK QEKDGTEKRGRGRPRKQPPVSPGTALVGSQ LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA R K Q P K R 1 0 0 0 0 2 2 2 0 0 1 3 0 0 6 3 2 0 0 3 0 0 25 2 2557.3752 P17096 P17096 31 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 3;4 1.2262E-29 154.92 By MS/MS 7.33 0.471 2 1 3 44064000 0 44064000 0 7206 583 7501 30608;30609;30610 25830;25831;25832;25833 25833 4 0 22328000 0 KQQLEVELR DIQQQKATGSEVSQRKQQLEVELRQVTQMR SEVSQRKQQLEVELRQVTQMRTEESVRYKQ R K Q L R Q 0 1 0 0 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1141.6455 P15924 P15924 1444 1452 DSP Desmoplakin yes yes 2 4.8592E-05 150.35 By MS/MS 1 0 1 1 16354000 0 16354000 0 7207 572 7502 30611 25834 25834 1 0 7993800 0 KQQMLENQMEVR DDYGKDLTSVNILLKKQQMLENQMEVRKKE LLKKQQMLENQMEVRKKEIEELQSQAQALS K K Q V R K 0 1 1 0 0 3 2 0 0 0 1 1 2 0 0 0 0 0 0 1 0 0 12 1 1532.7439 Q01082 Q01082 1421 1432 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 0.0048566 103.26 By MS/MS By MS/MS 1 0 2 1 1 21228000 0 4298500 16930000 7208 1128 7503 30612;30613 25835;25836 25836 2 0 2101000 3647700 KQQNQELQEQLR YKLQMEKAKTHYDAKKQQNQELQEQLRSLE DAKKQQNQELQEQLRSLEQLQKENKELRAE K K Q L R S 0 1 1 0 0 5 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1540.7958 Q14980 Q14980 1625 1636 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 3.1624E-73 248.14 By matching By MS/MS By MS/MS 1.4 0.8 4 1 1 1 3 61154000 4183300 9274700 47696000 7209 1327 7504 30614;30615;30616;30617;30618 25837;25838;25839 25839 3 4183300 4533400 10118000 KQQTLEAEEAK RRYREREQQIEEHRRKQQTLEAEEAKRRLK EHRRKQQTLEAEEAKRRLKEQSIFGDHRDE R K Q A K R 2 0 0 0 0 2 3 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 11 1 1273.6514 Q16643 Q16643 238 248 DBN1 Drebrin yes yes 2;3 0.00017635 141.08 By MS/MS By matching 2.5 0.5 2 2 2 2 9792000 0 4940400 4851600 7210 1395 7505 30619;30620;30621;30622 25840;25841 25840 2 0 2224700 940980 KQSLGELIGTLNAAK SRKFFVGGNWKMNGRKQSLGELIGTLNAAK KQSLGELIGTLNAAKVPADTEVVCAPPTAY R K Q A K V 2 0 1 0 0 1 1 2 0 1 3 2 0 0 0 1 1 0 0 0 0 0 15 1 1541.8777 P60174 P60174 56 70 TPI1 Triosephosphate isomerase yes yes 3 0.0032567 69.258 By MS/MS By MS/MS 7 0 2 1 1 10423000 0 2704300 7719100 7211 962 7506 30623;30624 25842;25843 25842 2 0 1552800 1369700 KQTALVELLK HADICTLPDTEKQIKKQTALVELLKHKPKA EKQIKKQTALVELLKHKPKATEEQLKTVME K K Q L K H 1 0 0 0 0 1 1 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 10 1 1141.7071 CON__P02769 CON__P02769 548 557 yes yes 2 1.0145E-06 157.14 By MS/MS By MS/MS By MS/MS 5.62 2.86 2 3 3 2 2 3 3 3 2 3 11 8 7 672240000 475500000 113580000 83154000 + 7212 45 7507 30625;30626;30627;30628;30629;30630;30631;30632;30633;30634;30635;30636;30637;30638;30639;30640;30641;30642;30643;30644;30645;30646;30647;30648;30649;30650 25844;25845;25846;25847;25848;25849;25850;25851;25852;25853;25854;25855;25856;25857;25858;25859;25860;25861 25848 17 524470000 215490000 25931000 KQTALVELVK HADICTLSEKERQIKKQTALVELVKHKPKA ERQIKKQTALVELVKHKPKATKEQLKAVMD K K Q V K H 1 0 0 0 0 1 1 0 0 0 2 2 0 0 0 0 1 0 0 2 0 0 10 1 1127.6914 CON__P02768-1;P02768 CON__P02768-1 549 558 ALB Serum albumin yes no 2 1.3169E-22 194.12 By MS/MS 6.17 3.02 1 1 1 1 1 1 1 1 2 2 12 971850000 971850000 0 0 + 7213 44 7508 30651;30652;30653;30654;30655;30656;30657;30658;30659;30660;30661;30662 25862;25863;25864;25865;25866;25867;25868;25869;25870;25871;25872;25873 25862 12 818230000 0 0 KQTPSDFLK ______________________________ ______________________________ R K Q L K Q 0 0 0 1 0 1 0 0 0 0 1 2 0 1 1 1 1 0 0 0 0 0 9 1 1062.571 P62312 P62312 5 13 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 2.7857E-11 172.23 By matching By MS/MS 10 0 2 1 1 15139000 1214200 0 13925000 7214 1021 7509 30663;30664 25874 25874 1 2212000 0 30455000 KQTTLAFKPIK RLEKKQKREPGTKTKKQTTLAFKPIKKGKK TKTKKQTTLAFKPIKKGKKRNPWSDSESDR K K Q I K K 1 0 0 0 0 1 0 0 0 1 1 3 0 1 1 0 2 0 0 0 0 0 11 2 1273.7758 P11388 P11388 1276 1286 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.012483 76.165 By MS/MS 1 0 1 1 19262000 0 0 19262000 7215 524 7510 30665 25875 25875 1 0 0 4150200 KQVDSEHMHQNVPTEEQR LEKKDISKSEAKLSRKQVDSEHMHQNVPTE DSEHMHQNVPTEEQRTNKSTGGEHKKSDRK R K Q Q R T 0 1 1 1 0 3 3 0 2 0 0 1 1 0 1 1 1 0 0 2 0 0 18 1 2191.0076 P46100 P46100 467 484 ATRX Transcriptional regulator ATRX yes yes 3;4 1.1477E-05 99.569 By MS/MS 1 0 2 2 7876500 0 0 7876500 7216 825 7511 30666;30667 25876;25877 25876 2 0 0 1697100 KQVFDQYVK IVFDPRYLLLNPKERKQVFDQYVKTRAEEE LNPKERKQVFDQYVKTRAEEERREKKNKIM R K Q V K T 0 0 0 1 0 2 0 0 0 0 0 2 0 1 0 0 0 0 1 2 0 0 9 1 1153.6132 O14776 O14776 703 711 TCERG1 Transcription elongation regulator 1 yes yes 2 0.014396 91.265 By MS/MS 2 0 1 1 2769800 0 2769800 0 7217 145 7512 30668 25878 25878 1 0 1247300 0 KQVMGLITHTDSPYIR AFCLLYKLFTLKLTRKQVMGLITHTDSPYI QVMGLITHTDSPYIRALGFMYIRYTQPPTD R K Q I R A 0 1 0 1 0 1 0 1 1 2 1 1 1 0 1 1 2 0 1 1 0 0 16 1 1857.9771 Q5VTL8 Q5VTL8 143 158 PRPF38B Pre-mRNA-splicing factor 38B yes yes 3 0.005688 59.345 By MS/MS 3.5 0.5 1 1 2 5204400 0 5204400 0 7218 1461 7513 30669;30670 25879 25879 1 0 2041800 0 KQVSSHIQVLAR IARYIKLRTGKTRTRKQVSSHIQVLARRKS RTRKQVSSHIQVLARRKSRDFHSKLKDQTA R K Q A R R 1 1 0 0 0 2 0 0 1 1 1 1 0 0 0 2 0 0 0 2 0 0 12 1 1364.7888 P28347;Q99594;Q15562 P28347 88 99 TEAD1;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 no no 3 0.004542 80.69 By MS/MS By MS/MS 3.71 1.83 1 1 1 2 1 1 2 5 37550000 0 3442900 34108000 7219 692 7514 30671;30672;30673;30674;30675;30676;30677 25880;25881;25882;25883 25882 4 0 1142600 5283600 KQVVNIPSFIVR HHARVLIRQRHIRVRKQVVNIPSFIVRLDS RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY R K Q V R L 0 1 1 0 0 1 0 0 0 2 0 1 0 1 1 1 0 0 0 3 0 0 12 1 1398.8347 P46781 P46781 139 150 RPS9 40S ribosomal protein S9 yes yes 2;3 0.001216 121.83 By MS/MS By MS/MS 6.8 0.4 1 4 3 2 91128000 0 36644000 54484000 7220 831 7515 30678;30679;30680;30681;30682 25884;25885;25886;25887;25888 25886 5 0 20880000 9667800 KQYDAYGSAGFDPGASGSQHSYWK QLAEAYEVLSDEVKRKQYDAYGSAGFDPGA GFDPGASGSQHSYWKGGPTVDPEELFRKIF R K Q W K G 3 0 0 2 0 2 0 4 1 0 0 2 0 1 1 4 0 1 3 0 0 0 24 1 2606.1462 Q96EY1 Q96EY1 152 175 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 4 0.0025157 44.74 By MS/MS 5 0 1 1 5212600 0 5212600 0 7221 1778 7516 30683 25889 25889 1 0 1343700 0 KQYPISLVLAPTR EALRAMKENGRYGRRKQYPISLVLAPTREL RRKQYPISLVLAPTRELAVQIYEEARKFSY R K Q T R E 1 1 0 0 0 1 0 0 0 1 2 1 0 0 2 1 1 0 1 1 0 0 13 1 1484.8715 O00571;O15523 O00571 264 276 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 0.000186 152.7 By MS/MS By MS/MS 3.1 0.943 1 1 4 4 4 6 91770000 0 48634000 43137000 7222 131 7517 30684;30685;30686;30687;30688;30689;30690;30691;30692;30693 25890;25891;25892;25893;25894;25895;25896 25892 7 0 19215000 8273000 KRDWEAIASR AKLDKLDGLRTGTKRKRDWEAIASRMEDYL TGTKRKRDWEAIASRMEDYLQLPDDYDTRA R K R S R M 2 2 0 1 0 0 1 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 10 2 1230.6469 P49750 P49750 2067 2076 YLPM1 YLP motif-containing protein 1 yes yes 3 0.063693 52.903 By MS/MS 1 0 1 1 5662300 0 0 5662300 7223 865 7518 30694 25897 25897 1 0 0 1220000 KREEIPLDFK KLTPEEKNDVSENNRKREEIPLDFKTIDDH SENNRKREEIPLDFKTIDDHKTKENKQSLK R K R F K T 0 1 0 1 0 0 2 0 0 1 1 2 0 1 1 0 0 0 0 0 0 0 10 2 1273.703 Q99549 Q99549 467 476 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 0.012255 75.566 By MS/MS 2 0.816 1 1 1 3 16155000 0 0 16155000 7224 1849 7519 30695;30696;30697 25898 25898 1 0 0 3496000 KREELSNVLAAMR KFIKKRVGTHIRAKRKREELSNVLAAMRKA KRKREELSNVLAAMRKAAAKKD________ R K R M R K 2 2 1 0 0 0 2 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 13 2 1515.8191 Q9Y3U8 Q9Y3U8 86 98 RPL36 60S ribosomal protein L36 yes yes 2;3 8.9683E-146 289.59 By MS/MS By MS/MS 7.67 1.05 2 1 4 2 3 6 536610000 0 107270000 429340000 7225 2278 7520 30698;30699;30700;30701;30702;30703;30704;30705;30706 25899;25900;25901;25902;25903 25903 5 0 48610000 94523000 KRHEMPPHIYAITDTAYR LPIYSEEIVEMYKGKKRHEMPPHIYAITDT EMPPHIYAITDTAYRSMMQDREDQSILCTG K K R Y R S 2 2 0 1 0 0 1 0 2 2 0 1 1 0 2 0 2 0 2 0 0 0 18 2 2198.1055 P35579 P35579 142 159 MYH9 Myosin-9 yes yes 4 0.020019 54.964 By MS/MS 1 0 1 1 3264900 0 3264900 0 7226 752 7521 30707 25904 25904 348 1 0 1595900 0 KRPAPQQIQQVQQQAVQNR SVRPGLAQSGMDQSRKRPAPQQIQQVQQQA PQQIQQVQQQAVQNRNHNAKKKKMADKILP R K R N R N 2 2 1 0 0 8 0 0 0 1 0 1 0 0 2 0 0 0 0 2 0 0 19 2 2244.2199 Q96GM5 Q96GM5 101 119 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes yes 4 1.7721E-06 105.63 By MS/MS 4 0 1 1 7399000 0 7399000 0 7227 1791 7522 30708 25905 25905 1 0 2455400 0 KSAEFLLHMLK AQAKQWGWTQGRWPKKSAEFLLHMLKNAES RWPKKSAEFLLHMLKNAESNAELKGLDVDS K K S L K N 1 0 0 0 0 0 1 0 1 0 3 2 1 1 0 1 0 0 0 0 0 0 11 1 1315.7322 P18621 P18621 86 96 RPL17 60S ribosomal protein L17 yes yes 2;3 0.00072382 103.43 By MS/MS By MS/MS 7 1 3 3 1 1 2 6 237930000 0 25555000 212380000 7228 597 7523 30709;30710;30711;30712;30713;30714;30715;30716 25906;25907;25908;25909;25910;25911 25907 6 0 13655000 37563000 KSDGIYIINLK GTNLDFQMEQYIYKRKSDGIYIINLKRTWE IYKRKSDGIYIINLKRTWEKLLLAARAIVA R K S L K R 0 0 1 1 0 0 0 1 0 3 1 2 0 0 0 1 0 0 1 0 0 0 11 1 1262.7234 P08865 P08865 42 52 RPSA 40S ribosomal protein SA yes yes 3 0.010317 62.799 By MS/MS 6 0 1 1 0 0 0 0 7229 480 7524 30717 25912 25912 1 0 0 0 KSDGIYIINLKR GTNLDFQMEQYIYKRKSDGIYIINLKRTWE YKRKSDGIYIINLKRTWEKLLLAARAIVAI R K S K R T 0 1 1 1 0 0 0 1 0 3 1 2 0 0 0 1 0 0 1 0 0 0 12 2 1418.8245 P08865 P08865 42 53 RPSA 40S ribosomal protein SA yes yes 3 1.0166E-05 150.09 By MS/MS 6 0 1 1 26533000 0 26533000 0 7230 480 7525 30718 25913 25913 1 0 9184900 0 KSDLFQDDLYPDTAGPEAALEAEEWFEGK LHERKCEPIIMTVPRKSDLFQDDLYPDTAG GPEAALEAEEWFEGKNADPILISLKHGYIP R K S G K N 4 0 0 4 0 1 5 2 0 0 3 2 0 2 2 1 1 1 1 0 0 0 29 1 3270.4881 Q9ULV4 Q9ULV4 353 381 CORO1C Coronin-1C yes yes 3 9.3161E-22 108.1 By MS/MS 4 0 1 1 15936000 0 0 15936000 7231 2192 7526 30719 25914 25914 1 0 0 2602900 KSDVEAIFSK NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K K S S K Y 1 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 0 0 0 1 0 0 10 1 1122.5921 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 30 39 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 1.6462E-38 212.28 By MS/MS By MS/MS 6.4 1.85 2 2 1 3 2 716290000 0 296640000 419650000 7232 467 7527 30720;30721;30722;30723;30724 25915;25916;25917;25918;25919;25920;25921 25916 6 0 113200000 59978000 KSDVETIFSK NSRVFIGNLNTALVKKSDVETIFSKYGRVA TALVKKSDVETIFSKYGRVAGCSVHKGYAF K K S S K Y 0 0 0 1 0 0 1 0 0 1 0 2 0 1 0 2 1 0 0 1 0 0 10 1 1152.6027 Q9UKM9 Q9UKM9 35 44 RALY RNA-binding protein Raly yes yes 2 1.9677E-22 193.21 By MS/MS By MS/MS 5.25 0.829 1 1 2 3 1 97145000 0 53962000 43183000 7233 2181 7528 30725;30726;30727;30728 25922;25923 25922 2 0 18416000 6460700 KSEAVGMSNQTDLLALGTAVGSILLYSTVK PARLQAKESPQRKKRKSEAVGMSNQTDLLA LGTAVGSILLYSTVKGELHSKLISGGHDNR R K S V K G 3 0 1 1 0 1 1 3 0 1 5 2 1 0 0 4 3 0 1 3 0 0 30 1 3065.6319 Q15061 Q15061 84 113 WDR43 WD repeat-containing protein 43 yes yes 3 0.00061671 41.734 By MS/MS 3 0 1 1 2512700 0 0 2512700 7234 1343 7529 30729 25924 25924 1 0 0 487350 KSEDGTPAEDGTPAATGGSQPPSMGR KKKGFLPETKKRKKRKSEDGTPAEDGTPAA TPAATGGSQPPSMGRKKRNRTKAKVPAQAN R K S G R K 3 1 0 2 0 1 2 5 0 0 0 1 1 0 4 3 3 0 0 0 0 0 26 1 2500.1136 Q9BQG0 Q9BQG0 1185 1210 MYBBP1A Myb-binding protein 1A yes yes 3 3.7903E-29 148.26 By MS/MS By MS/MS 1.5 0.5 2 2 3 1 17401000 0 12973000 4427500 7235 1885 7530;7531 30730;30731;30732;30733 25925;25926;25927;25928 25926 675 4 0 5970300 953980 KSEIEYYAMLAK KAKLVILANNCPALRKSEIEYYAMLAKTGV ALRKSEIEYYAMLAKTGVHHYSGNNIELGT R K S A K T 2 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 2 0 0 0 12 1 1444.7272 P62888 P62888 57 68 RPL30 60S ribosomal protein L30 yes yes 2;3 1.6214E-12 184.03 By MS/MS By MS/MS 8.4 0.49 6 4 4 6 207510000 0 38677000 168830000 7236 1046 7532;7533 30734;30735;30736;30737;30738;30739;30740;30741;30742;30743 25929;25930;25931;25932;25933;25934;25935 25929 502 7 0 22620000 30456000 KSESEVEEAAAIIAQRPDNPR IFGDHRDEEEETHMKKSESEVEEAAAIIAQ EEAAAIIAQRPDNPREFFKQQERVASASAG K K S P R E 4 2 1 1 0 1 4 0 0 2 0 1 0 0 2 2 0 0 0 1 0 0 21 2 2309.1612 Q16643 Q16643 271 291 DBN1 Drebrin yes yes 3;4 1.2843E-46 212.24 By MS/MS By MS/MS 2.43 0.904 1 3 2 1 1 6 60790000 0 6429300 54360000 7237 1395 7534 30744;30745;30746;30747;30748;30749;30750 25936;25937;25938;25939 25938 4 0 2895200 11663000 KSEVNDKNHEMEEIR TMAQLQDLKNQHLAKKSEVNDKNHEMEEIR KSEVNDKNHEMEEIRKKLGGANKEMTHLQK K K S I R K 0 1 2 1 0 0 4 0 1 1 0 2 1 0 0 1 0 0 0 1 0 0 15 2 1856.8687 Q14683 Q14683 881 895 SMC1A Structural maintenance of chromosomes protein 1A yes yes 3;4 8.0672E-08 164.65 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 35034000 0 2373500 32661000 7238 1312 7535 30751;30752;30753;30754;30755;30756 25940;25941;25942;25943 25942 4 0 1108700 7149000 KSLEGADLPNLLFYGPPGTGK VDEVAFQEEVVAVLKKSLEGADLPNLLFYG DLPNLLFYGPPGTGKTSTILAAARELFGPE K K S G K T 1 0 1 1 0 0 1 4 0 0 4 2 0 1 3 1 1 0 1 0 0 0 21 1 2173.1419 P35249 P35249 64 84 RFC4 Replication factor C subunit 4 yes yes 3 0.01337 40.756 By MS/MS 6 0 1 1 1797900 0 1797900 0 7239 744 7536 30757 25944 25944 1 0 622360 0 KSLPEEDVAEIQHAEEFLIKPESK EVIILPKKHKKKKERKSLPEEDVAEIQHAE EIQHAEEFLIKPESKVAKLDTSQWPLLLKN R K S S K V 2 0 0 1 0 1 6 0 1 2 2 3 0 1 2 2 0 0 0 1 0 0 24 2 2765.4123 O60832 O60832 20 43 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 4 0.021987 33.479 By MS/MS 4 0 1 1 17739000 0 0 17739000 7240 235 7537 30758 25945 25945 1 0 0 2897400 KSMYEEEINETR LENRCQSLTEDLEFRKSMYEEEINETRRKH EFRKSMYEEEINETRRKHETRLVEVDSGRQ R K S T R R 0 1 1 0 0 0 4 0 0 1 0 1 1 0 0 1 1 0 1 0 0 0 12 1 1527.6875 P20700 P20700 209 220 LMNB1 Lamin-B1 yes yes 2;3 0.00016118 140.61 By MS/MS By MS/MS 3 0 3 1 2 27757000 0 2160000 25597000 7241 619 7538;7539 30759;30760;30761 25946;25947;25948 25948 268 3 0 920800 4964600 KSNFSNSADDIK GENNKPREKSESNKRKSNFSNSADDIKSKK NKRKSNFSNSADDIKSKKKREQSNDIARGF R K S I K S 1 0 2 2 0 0 0 0 0 1 0 2 0 1 0 3 0 0 0 0 0 0 12 1 1324.6259 P45973 P45973 91 102 CBX5 Chromobox protein homolog 5 yes yes 2;3 6.0177E-58 230.81 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 84955000 0 4541700 80413000 7242 820 7540 30762;30763;30764;30765;30766 25949;25950;25951;25952 25952 4 0 2607900 14170000 KSPDSDVAATLK FIVALNKIDRLYDWKKSPDSDVAATLKKQK DWKKSPDSDVAATLKKQKKNTKDEFEERAK K K S L K K 2 0 0 2 0 0 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 12 1 1230.6456 O60841 O60841 766 777 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.0022546 114.93 By MS/MS 1 0 1 1 6012800 0 0 6012800 7243 236 7541 30767 25953 25953 1 0 0 1295600 KSPDSDVAATLKK FIVALNKIDRLYDWKKSPDSDVAATLKKQK WKKSPDSDVAATLKKQKKNTKDEFEERAKA K K S K K Q 2 0 0 2 0 0 0 0 0 0 1 3 0 0 1 2 1 0 0 1 0 0 13 2 1358.7405 O60841 O60841 766 778 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.021934 64.842 By matching By matching By MS/MS 1.25 0.433 3 1 1 1 2 12788000 1459100 1483900 9845400 7244 236 7542 30768;30769;30770;30771 25954;25955 25954 2 1459100 725300 2153000 KSQGPLEVAEAAVSQSSGLAAK KAGGKEFLETVKELRKSQGPLEVAEAAVSQ VAEAAVSQSSGLAAKFVIHCHIPQWGSDKC R K S A K F 5 0 0 0 0 2 2 2 0 0 2 2 0 0 1 4 0 0 0 2 0 0 22 1 2127.1172 Q9P0M6 Q9P0M6 250 271 H2AFY2 Core histone macro-H2A.2 yes yes 3 1.4499E-09 94.671 By MS/MS 5 0 1 1 11293000 0 0 11293000 7245 2117 7543 30772 25956 25956 1 0 0 1575200 KSQPMGLWR SLNDLQFFRYNSKDRKSQPMGLWRQVEGME YNSKDRKSQPMGLWRQVEGMEDWKQDSQLQ R K S W R Q 0 1 0 0 0 1 0 1 0 0 1 1 1 0 1 1 0 1 0 0 0 0 9 1 1101.5753 P25311 P25311 67 75 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 0.0004975 110.31 By MS/MS 6.67 3.73 1 1 1 1 2 6 31154000 31154000 0 0 7246 656 7544 30773;30774;30775;30776;30777;30778 25957;25958;25959;25960 25960 4 29643000 0 0 KSVEEVASEIQPFLR QLIDKTTLDKLLKGKKSVEEVASEIQPFLR KSVEEVASEIQPFLRGAGSIAGASASPKEK K K S L R G 1 1 0 0 0 1 3 0 0 1 1 1 0 1 1 2 0 0 0 2 0 0 15 1 1730.9203 P15924 P15924 1999 2013 DSP Desmoplakin yes yes 3 0.013326 55.414 By MS/MS 1 0 1 1 1345400 0 1345400 0 7247 572 7545 30779 25961 25961 1 0 657630 0 KTANDMIHAENMR KALTSELANARDESKKTANDMIHAENMRLG SKKTANDMIHAENMRLGRDKYKTLRQIRQG K K T M R L 2 1 2 1 0 0 1 0 1 1 0 1 2 0 0 0 1 0 0 0 0 0 13 1 1529.7079 P26038 P26038 538 550 MSN Moesin yes yes 3 0.00075406 102.28 By MS/MS 3 0 1 1 15712000 0 15712000 0 7248 664 7546 30780 25962 25962 1 0 6698100 0 KTASVLSKDDVAPESGDTTVK FEKQKERKKKRQQARKTASVLSKDDVAPES SKDDVAPESGDTTVKKPESKKEQTPEHGKK R K T V K K 2 0 0 3 0 0 1 1 0 0 1 3 0 0 1 3 3 0 0 3 0 0 21 2 2147.0958 O76021 O76021 311 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 3 1.3994E-05 78.957 By MS/MS 3 0 1 1 12634000 0 0 12634000 7249 295 7547 30781 25963 25963 1 0 0 2450300 KTCTTVAFTQVNSEDK CIIKGKARLGRLVHRKTCTTVAFTQVNSED TCTTVAFTQVNSEDKGALAKLVEAIRTNYN R K T D K G 1 0 1 1 1 1 1 0 0 0 0 2 0 1 0 1 4 0 0 2 0 0 16 1 1827.8673 P62424 P62424 197 212 RPL7A 60S ribosomal protein L7a yes yes 2;3 2.1005E-18 191.06 By MS/MS 6 0 2 2 35726000 0 0 35726000 7250 1026 7548 30782;30783 25964;25965 25965 2 0 0 5345000 KTCTTVAFTQVNSEDKGALAK CIIKGKARLGRLVHRKTCTTVAFTQVNSED AFTQVNSEDKGALAKLVEAIRTNYNDRYDE R K T A K L 3 0 1 1 1 1 1 1 0 0 1 3 0 1 0 1 4 0 0 2 0 0 21 2 2268.142 P62424 P62424 197 217 RPL7A 60S ribosomal protein L7a yes yes 3 6.7182E-12 119.87 By MS/MS 6 0 1 1 18192000 0 0 18192000 7251 1026 7549 30784 25966 25966 1 0 0 2721700 KTDDVEAMSSQPALALDER STDFAPIKEDFGQEKKTDDVEAMSSQPALA VEAMSSQPALALDERKLGDVSPTQIDVSQF K K T E R K 3 1 0 3 0 1 2 0 0 0 2 1 1 0 1 2 1 0 0 1 0 0 19 1 2074.9841 P46821 P46821 1477 1495 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 7.6771E-05 90.017 By MS/MS 1 0 1 1 11710000 0 0 11710000 7252 834 7550 30785 25967 25967 1 0 0 2523100 KTEELEEESFPER WEGLVYAPPGKEKQRKTEELEEESFPERSK QRKTEELEEESFPERSKKEDRGKRSEGGHR R K T E R S 0 1 0 0 0 0 6 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 13 1 1621.7471 Q9Y2W1 Q9Y2W1 486 498 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 1.9852E-142 223.31 By MS/MS 1.8 0.748 2 2 1 5 70824000 0 0 70824000 7253 2252 7551 30786;30787;30788;30789;30790 25968;25969;25970;25971;25972 25969 5 0 0 15769000 KTEPATGFIDGDLIESFLDISRPK GKIEHSFWRSFHTERKTEPATGFIDGDLIE DGDLIESFLDISRPKMQEVVANLQYDDGSG R K T P K M 1 1 0 3 0 0 2 2 0 3 2 2 0 2 2 2 2 0 0 0 0 0 24 2 2648.3697 Q16531 Q16531 1081 1104 DDB1 DNA damage-binding protein 1 yes yes 3;4 4.5769E-21 137.24 By MS/MS 1.67 0.471 1 2 3 19381000 0 0 19381000 7254 1387 7552 30791;30792;30793 25973;25974;25975 25975 3 0 0 4327700 KTEVLMENFR FCPMVGSEVYSTEIKKTEVLMENFRRAIGL STEIKKTEVLMENFRRAIGLRIKETKEVYE K K T F R R 0 1 1 0 0 0 2 0 0 0 1 1 1 1 0 0 1 0 0 1 0 0 10 1 1265.6438 Q9Y265 Q9Y265 108 117 RUVBL1 RuvB-like 1 yes yes 2 0.0008293 117.53 By MS/MS 4 0 1 1 13840000 0 0 13840000 7255 2234 7553 30794 25976 25976 1 0 0 2260600 KTFDPYIIIR TLDLIEGSMTVCTTKKTFDPYIIIRARDLI VCTTKKTFDPYIIIRARDLIKLLARSVSFE K K T I R A 0 1 0 1 0 0 0 0 0 3 0 1 0 1 1 0 1 0 1 0 0 0 10 1 1264.718 Q13601 Q13601 106 115 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.041941 80.755 By matching By MS/MS 4.5 0.5 1 1 1 1 8438600 1124600 0 7314000 7256 1261 7554 30795;30796 25977 25977 1 877380 0 1020200 KTGQPMINLYTDR VADYFKQIGIIKTNKKTGQPMINLYTDRET NKKTGQPMINLYTDRETGKLKGEATVSFDD K K T D R E 0 1 1 1 0 1 0 1 0 1 1 1 1 0 1 0 2 0 1 0 0 0 13 1 1535.7766 P35637 P35637 316 328 FUS RNA-binding protein FUS yes yes 3 0.017611 59.68 By MS/MS 3.5 0.5 1 1 2 13393000 0 13393000 0 7257 756 7555 30797;30798 25978 25978 1 0 5298100 0 KTGSQYDIQDAIDK ITGSDGSTRVVLVDRKTGSQYDIQDAIDKG RKTGSQYDIQDAIDKGLVDRKFFDQYRSGS R K T D K G 1 0 0 3 0 2 0 1 0 2 0 2 0 0 0 1 1 0 1 0 0 0 14 1 1580.7682 P15924 P15924 2523 2536 DSP Desmoplakin yes yes 2 0.0010954 142.85 By MS/MS 1 0 1 1 7109800 0 0 7109800 7258 572 7556 30799 25979 25979 1 0 0 1531900 KTHIQDNHDGTYTVAYVPDVTGR GLLAVQITDPEGKPKKTHIQDNHDGTYTVA DGTYTVAYVPDVTGRYTILIKYGGDEIPFS K K T G R Y 1 1 1 3 0 1 0 2 2 1 0 1 0 0 1 0 4 0 2 3 0 0 23 1 2586.2463 P21333 P21333 1593 1615 FLNA Filamin-A yes yes 4 5.9969E-10 95.835 By MS/MS 1.5 0.5 1 1 2 22937000 0 0 22937000 7259 623 7557 30800;30801 25980 25980 1 0 0 4965900 KTHQPSDEVGTSIEHPR SDLRRSEVPCAPMPKKTHQPSDEVGTSIEH HQPSDEVGTSIEHPREAEEVMDAGCQESAG K K T P R E 0 1 0 1 0 1 2 1 2 1 0 1 0 0 2 2 2 0 0 1 0 0 17 1 1916.9341 Q99575 Q99575 751 767 POP1 Ribonucleases P/MRP protein subunit POP1 yes yes 4 0.028823 40.179 By MS/MS 3 0.816 1 1 1 3 6214200 0 6214200 0 7260 1851 7558 30802;30803;30804 25981 25981 1 0 2531300 0 KTIPSWATLSASQLAR KDEKDQSKEKEKKVKKTIPSWATLSASQLA TIPSWATLSASQLARAQKQTPMASSPRPKM K K T A R A 3 1 0 0 0 1 0 0 0 1 2 1 0 0 1 3 2 1 0 0 0 0 16 1 1728.9523 Q5SSJ5 Q5SSJ5 131 146 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 3 0.0015353 74.338 By MS/MS 3 0 1 1 4888800 0 4888800 0 7261 1445 7559 30805 25982 25982 1 0 2084100 0 KTLDELSQGTTTVK QVSARDLFRAQLISRKTLDELSQGTTTVKE RKTLDELSQGTTTVKEVAEMDSVKRSLEGG R K T V K E 0 0 0 1 0 1 1 1 0 0 2 2 0 0 0 1 4 0 0 1 0 0 14 1 1519.8094 P58107 P58107 1542 1555 EPPK1 Epiplakin yes yes 2;3 0.00085124 145.81 By MS/MS 1 0 2 2 14150000 0 14150000 0 7262 958 7560 30806;30807 25983;25984 25984 2 0 6916500 0 KTNPEIQSTLR RRMAEAELVQEGKARKTNPEIQSTLRKRLY GKARKTNPEIQSTLRKRLYLQ_________ R K T L R K 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 2 0 0 0 0 0 11 1 1285.699 P31944 P31944 226 236 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 2.875E-06 153.1 By MS/MS By MS/MS 5.96 2.91 2 2 2 2 2 3 3 2 2 4 20 4 269660000 263130000 0 6530600 7263 723 7561 30808;30809;30810;30811;30812;30813;30814;30815;30816;30817;30818;30819;30820;30821;30822;30823;30824;30825;30826;30827;30828;30829;30830;30831 25985;25986;25987;25988;25989;25990;25991;25992;25993;25994;25995;25996;25997;25998;25999;26000;26001;26002;26003;26004 25989 19 311600000 0 11107000 KTNPEIQSTLRK RRMAEAELVQEGKARKTNPEIQSTLRKRLY KARKTNPEIQSTLRKRLYLQ__________ R K T R K R 0 1 1 0 0 1 1 0 0 1 1 2 0 0 1 1 2 0 0 0 0 0 12 2 1413.794 P31944 P31944 226 237 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 3 0.020378 69.03 By MS/MS 9.5 0.5 1 1 2 2908900 2908900 0 0 7264 723 7562 30832;30833 26005;26006 26006 2 2961500 0 0 KTPANEKVEIQK NESEDEIPQLVPIGKKTPANEKVEIQKHAT IGKKTPANEKVEIQKHATGKKSPAKSPNPS K K T Q K H 1 0 1 0 0 1 2 0 0 1 0 3 0 0 1 0 1 0 0 1 0 0 12 2 1383.7722 O76021 O76021 374 385 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 3 0.012522 75.683 By MS/MS 3.5 0.5 1 1 2 4012000 0 4012000 0 7265 295 7563 30834;30835 26007;26008 26008 2 0 1525600 0 KTPPAPSPFDLPELK KILKEMCDVEQVLSKKTPPAPSPFDLPELK KTPPAPSPFDLPELKHVATEYQENKAPGKK K K T L K H 1 0 0 1 0 0 1 0 0 0 2 2 0 1 5 1 1 0 0 0 0 0 15 1 1635.8872 O95239 O95239 1180 1194 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 0.058506 35.091 By MS/MS 2 0 1 1 2935500 0 0 2935500 7266 314 7564 30836 26009 26009 1 0 0 663360 KTQEQLALEMAELTAR EEAKEALLQASRDQKKTQEQLALEMAELTA TQEQLALEMAELTARISQLEMARQKKESEA K K T A R I 3 1 0 0 0 2 3 0 0 0 3 1 1 0 0 0 2 0 0 0 0 0 16 1 1830.9509 P26038 P26038 412 427 MSN Moesin yes yes 2 0.023395 67.93 By MS/MS 3 0 1 1 6008000 0 0 6008000 7267 664 7565 30837 26010 26010 1 0 0 1165300 KTQMAEVLPSPR EQVGLPGKGGKAKGKKTQMAEVLPSPRGQR KGKKTQMAEVLPSPRGQRVIPRITIEMKAE K K T P R G 1 1 0 0 0 1 1 0 0 0 1 1 1 0 2 1 1 0 0 1 0 0 12 1 1355.7231 P11388 P11388 1204 1215 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 0.02981 68.355 By MS/MS 1 0 2 2 0 0 0 0 7268 524 7566 30838;30839 26011;26012 26011 2 0 0 0 KTTDTASVQNEAK KPTANKKCDLISIPKKTTDTASVQNEAKLD PKKTTDTASVQNEAKLDEILKEIKSIKDTI K K T A K L 2 0 1 1 0 1 1 0 0 0 0 2 0 0 0 1 3 0 0 1 0 0 13 1 1391.6892 Q9ULV4 Q9ULV4 428 440 CORO1C Coronin-1C yes yes 3 0.026111 59.796 By MS/MS 5 0 1 1 1370600 0 1370600 0 7269 2192 7567 30840 26013 26013 0 0 353310 0 KTTHFVEGGDAGNR LWPFKLSSPRGGMKKKTTHFVEGGDAGNRE KKTTHFVEGGDAGNREDQINRLIRRMN___ K K T N R E 1 1 1 1 0 0 1 3 1 0 0 1 0 1 0 0 2 0 0 1 0 0 14 1 1487.7117 P18124 P18124 223 236 RPL7 60S ribosomal protein L7 yes yes 3 0.014796 57.328 By MS/MS 6 0 1 1 1492000 0 0 1492000 7270 594 7568 30841 26014 26014 1 0 0 223220 KTTHFVEGGDAGNREDQINR LWPFKLSSPRGGMKKKTTHFVEGGDAGNRE VEGGDAGNREDQINRLIRRMN_________ K K T N R L 1 2 2 2 0 1 2 3 1 1 0 1 0 1 0 0 2 0 0 1 0 0 20 2 2243.0679 P18124 P18124 223 242 RPL7 60S ribosomal protein L7 yes yes 3;4;5 2.1903E-15 161.95 By MS/MS By MS/MS 4.79 2.14 2 1 1 1 1 6 1 1 4 10 178110000 0 51692000 126410000 7271 594 7569 30842;30843;30844;30845;30846;30847;30848;30849;30850;30851;30852;30853;30854;30855 26015;26016;26017;26018;26019;26020;26021;26022;26023;26024 26022 10 0 18201000 19476000 KTTLQVDTLNAELAAER EEEQSNMELLNDRFRKTTLQVDTLNAELAA TLQVDTLNAELAAERSAAQKSDNARQQLER R K T E R S 3 1 1 1 0 1 2 0 0 0 3 1 0 0 0 0 3 0 0 1 0 0 17 1 1871.9953 P35580 P35580 1761 1777 MYH10 Myosin-10 yes yes 3 1.6775E-06 116.81 By MS/MS 1 0 1 1 8962300 0 8962300 0 7272 753 7570 30856 26025 26025 1 0 4380600 0 KTVGVEPAADGK LKARNSFRYNGLIHRKTVGVEPAADGKGVV IHRKTVGVEPAADGKGVVVVIKRRSGQRKP R K T G K G 2 0 0 1 0 0 1 2 0 0 0 2 0 0 1 0 1 0 0 2 0 0 12 1 1170.6245 P46779 P46779 47 58 RPL28 60S ribosomal protein L28 yes yes 2 0.025493 88.338 By MS/MS 7 0 1 1 2183900 0 0 2183900 7273 830 7571 30857 26026 26026 1 0 0 387520 KTVTAMDVVYALK NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ KRKTVTAMDVVYALKRQGRTLYGFGG____ R K T L K R 2 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 13 1 1437.7901 P62805 P62805 80 92 HIST1H4A Histone H4 yes yes 2;3 2.8297E-17 193.28 By MS/MS By MS/MS By MS/MS 7.34 2.61 2 2 4 2 1 3 7 7 15 10 2 18 33 10563000000 13249000 1544500000 9005300000 7274 1033 7572;7573 30858;30859;30860;30861;30862;30863;30864;30865;30866;30867;30868;30869;30870;30871;30872;30873;30874;30875;30876;30877;30878;30879;30880;30881;30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894;30895;30896;30897;30898;30899;30900;30901;30902;30903;30904;30905;30906;30907;30908;30909;30910 26027;26028;26029;26030;26031;26032;26033;26034;26035;26036;26037;26038;26039;26040;26041;26042;26043;26044;26045;26046;26047;26048;26049;26050;26051;26052;26053;26054;26055;26056;26057;26058;26059;26060;26061;26062;26063;26064;26065;26066;26067;26068;26069;26070;26071;26072;26073;26074;26075;26076;26077;26078 26037 492 52 10734000 1917900000 2921000000 KTVTAMDVVYALKR NVIRDAVTYTEHAKRKTVTAMDVVYALKRQ RKTVTAMDVVYALKRQGRTLYGFGG_____ R K T K R Q 2 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 14 2 1593.8912 P62805 P62805 80 93 HIST1H4A Histone H4 yes yes 2;3;4 1.9362E-194 311.76 By matching By MS/MS By MS/MS 8.62 1.03 1 2 7 9 5 1 11 12 2242300000 4025300 459680000 1778600000 7275 1033 7574;7575 30911;30912;30913;30914;30915;30916;30917;30918;30919;30920;30921;30922;30923;30924;30925;30926;30927;30928;30929;30930;30931;30932;30933;30934 26079;26080;26081;26082;26083;26084;26085;26086;26087;26088;26089;26090;26091;26092;26093;26094;26095;26096;26097;26098;26099;26100;26101;26102 26095 492 24 5359800 853460000 558060000 KVASTLTEEGGGGGGGGGSVAPKPPR PPGSQALQVVPDLSKKVASTLTEEGGGGGG GGGGGGGSVAPKPPRGRKKKRMLESGLPEM K K V P R G 2 1 0 0 0 0 2 9 0 0 1 2 0 0 3 2 2 0 0 2 0 0 26 2 2322.1928 Q8TF68 Q8TF68 167 192 ZNF384 Zinc finger protein 384 yes yes 4 3.1529E-12 89.272 By MS/MS 3.5 0.5 1 1 2 7682200 0 7682200 0 7276 1669 7576 30935;30936 26103 26103 1 0 2814700 0 KVDDDLGTIESLEEAK KQVLALQSQLADTKKKVDDDLGTIESLEEA VDDDLGTIESLEEAKKKLLKDAEALSQRLE K K V A K K 1 0 0 3 0 0 3 1 0 1 2 2 0 0 0 1 1 0 0 1 0 0 16 1 1760.868 P35580 P35580 1379 1394 MYH10 Myosin-10 yes yes 3 1.6981E-05 79.471 By MS/MS 1 0 1 1 0 0 0 0 7277 753 7577 30937 26104 26104 1 0 0 0 KVDGSVNAYAINVSQK MKLMGFASFDSTKGKKVDGSVNAYAINVSQ VDGSVNAYAINVSQKRKYRQYMNRKGGFNR K K V Q K R 2 0 2 1 0 1 0 1 0 1 0 2 0 0 0 2 0 0 1 3 0 0 16 1 1691.8842 Q8WVK2 Q8WVK2 119 134 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes yes 2 4.9726E-08 166.03 By matching By MS/MS 7 0 2 1 1 20089000 3406700 0 16683000 7278 1682 7578 30938;30939 26105 26105 1 7342200 0 2960200 KVDKIEELDQENEAALENGIK KKDGSASAAAKKKLKKVDKIEELDQENEAA ELDQENEAALENGIKNEENTEPGAESSENA K K V I K N 2 0 2 2 0 1 5 1 0 2 2 3 0 0 0 0 0 0 0 1 0 0 21 2 2384.2071 P43243 P43243 716 736 MATR3 Matrin-3 yes yes 4 0.035463 34.65 By MS/MS 2 0 1 1 13011000 0 0 13011000 7279 812 7579 30940 26106 26106 1 0 0 2940100 KVDLETLKEDSEFTK VECQSTSTVGGQSVKKVDLETLKEDSEFTK KVDLETLKEDSEFTKVEMDNLDNAQTSGIE K K V T K V 0 0 0 2 0 0 3 0 0 0 2 3 0 1 0 1 2 0 0 1 0 0 15 2 1780.9095 Q96T23 Q96T23 663 677 RSF1 Remodeling and spacing factor 1 yes yes 2;3 2.6906E-09 174.95 By MS/MS 1.5 0.5 2 2 4 35186000 0 0 35186000 7280 1837 7580 30941;30942;30943;30944 26107;26108;26109 26108 3 0 0 7720700 KVDPMAIVVFHQADIGEYVR PLGFGVAAKSTQDCRKVDPMAIVVFHQADI AIVVFHQADIGEYVRHEETLT_________ R K V V R H 2 1 0 2 0 1 1 1 1 2 0 1 1 1 1 0 0 0 1 4 0 0 20 1 2286.1831 Q9Y221 Q9Y221 155 174 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes yes 4 0.00010402 74.698 By MS/MS 7 0 1 1 4874400 0 0 4874400 7281 2226 7581 30945 26110 26110 1 0 0 864930 KVDSSVLGSLSSVPLTGFSFSPGNSSLFGK PSSLGATSASFNFGKKVDSSVLGSLSSVPL TGFSFSPGNSSLFGKDTTQSKPVSSPFPTK K K V G K D 0 0 1 1 0 0 0 4 0 0 4 2 0 3 2 9 1 0 0 3 0 0 30 1 3000.5444 Q9UKX7 Q9UKX7 276 305 NUP50 Nuclear pore complex protein Nup50 yes yes 3 1.2301E-33 119.22 By MS/MS 4 0 1 1 15940000 0 15940000 0 7282 2185 7582 30946 26111 26111 1 0 5290000 0 KVDWLTEK TLTITQAVIFCNTKRKVDWLTEKMREANFT IFCNTKRKVDWLTEKMREANFTVSSMHGDM R K V E K M 0 0 0 1 0 0 1 0 0 0 1 2 0 0 0 0 1 1 0 1 0 0 8 1 1017.5495 P38919;P60842;Q14240 P38919 289 296 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 2.9937E-13 176.43 By MS/MS By MS/MS 5 0 2 1 1 141980000 0 45058000 96923000 7283 775;967;1294 7583 30947;30948 26112;26113 26112 2 0 11615000 13519000 KVEAQLQELQVK KVLLQGKGDSEHKRKKVEAQLQELQVKFNE KRKKVEAQLQELQVKFNEGERVRTELADKV K K V V K F 1 0 0 0 0 3 2 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 12 1 1411.8035 P35579 P35579 1249 1260 MYH9 Myosin-9 yes yes 2;3 5.7462E-58 231.17 By MS/MS By MS/MS 1.4 0.49 3 2 4 1 193460000 0 164740000 28720000 7284 752 7584 30949;30950;30951;30952;30953 26114;26115;26116 26115 3 0 80206000 6188100 KVEDLFLTFAK AARKKKLLEAQSHFRKVEDLFLTFAKKASA SHFRKVEDLFLTFAKKASAFNSWFENAEED R K V A K K 1 0 0 1 0 0 1 0 0 0 2 2 0 2 0 0 1 0 0 1 0 0 11 1 1309.7282 Q13813 Q13813 2088 2098 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 0.00025293 139.32 By MS/MS By MS/MS 1.33 0.471 4 2 2 4 57944000 0 13146000 44799000 7285 1268 7585 30954;30955;30956;30957;30958;30959 26117;26118;26119;26120;26121 26117 5 0 6425300 9756500 KVEEAEPEEFVVEK TTLQKMGKKQNGKSKKVEEAEPEEFVVEKV KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K K V E K V 1 0 0 0 0 0 6 0 0 0 0 2 0 1 1 0 0 0 0 3 0 0 14 1 1660.8196 Q13185 Q13185 21 34 CBX3 Chromobox protein homolog 3 yes yes 2;3 6.5482E-17 188.48 By MS/MS By MS/MS 7.4 1.02 2 4 2 2 2 8 513610000 0 10501000 503110000 7286 1228 7586 30960;30961;30962;30963;30964;30965;30966;30967;30968;30969 26122;26123;26124;26125;26126;26127;26128 26125 7 0 6029500 89989000 KVEEEEDESALKR SEYCRISNLIVLHLRKVEEEEDESALKRSE LRKVEEEEDESALKRSELVNWYLKEIESEI R K V K R S 1 1 0 1 0 0 5 0 0 0 1 2 0 0 0 1 0 0 0 1 0 0 13 2 1560.7631 Q14566 Q14566 733 745 MCM6 DNA replication licensing factor MCM6 yes yes 3 0.0025644 91.307 By MS/MS By matching 2.5 0.5 1 1 1 1 5612200 0 3377900 2234400 7287 1305 7587 30970;30971 26129 26129 1 0 1521100 433360 KVEELQACVETAR TSVTQAQREKAELSRKVEELQACVETARQE SRKVEELQACVETARQEQHEAQAQVAELEL R K V A R Q 2 1 0 0 1 1 3 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 13 1 1531.7664 Q14980 Q14980 651 663 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00053201 137.16 By MS/MS 1 0 1 1 6913500 0 0 6913500 7288 1327 7588 30972 26130 26130 1 0 0 1489600 KVELSESEEDKGGK GTEKRESPSPAPKPRKVELSESEEDKGGKM RKVELSESEEDKGGKMAAADSVQQRRQYRR R K V G K M 0 0 0 1 0 0 4 2 0 0 1 3 0 0 0 2 0 0 0 1 0 0 14 2 1533.7522 Q8IYB3 Q8IYB3 459 472 SRRM1 Serine/arginine repetitive matrix protein 1 yes yes 3 0.00096187 96.27 By MS/MS By matching 2.5 0.5 1 1 1 1 8332500 0 5395100 2937400 7289 1591 7589 30973;30974 26131 26131 1 0 2429500 569710 KVEQLQQEYTEMK DVRNRQQDVRMTANRKVEQLQQEYTEMKAL NRKVEQLQQEYTEMKALLDASETTSTRKIK R K V M K A 0 0 0 0 0 3 3 0 0 0 1 2 1 0 0 0 1 0 1 1 0 0 13 1 1652.808 Q14258 Q14258 237 249 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2;3 1.816E-17 194.24 By MS/MS By MS/MS 3 0 3 2 1 20313000 0 8880600 11432000 7290 1297 7590 30975;30976;30977 26132;26133;26134 26133 3 0 3785800 2217300 KVESLQEEIAFLK QDVDNASLARLDLERKVESLQEEIAFLKKL ERKVESLQEEIAFLKKLHEEEIQELQAQIQ R K V L K K 1 0 0 0 0 1 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1532.845 P08670 P08670 223 235 VIM Vimentin yes yes 2;3 1.0633E-106 269.04 By MS/MS By MS/MS 3.93 1.98 4 4 4 5 4 4 2 1 13 15 2709900000 0 464010000 2245900000 7291 476 7591 30978;30979;30980;30981;30982;30983;30984;30985;30986;30987;30988;30989;30990;30991;30992;30993;30994;30995;30996;30997;30998;30999;31000;31001;31002;31003;31004;31005 26135;26136;26137;26138;26139;26140;26141;26142;26143;26144;26145;26146;26147;26148;26149;26150;26151;26152;26153;26154;26155;26156;26157;26158;26159;26160;26161;26162;26163;26164 26142 30 0 150720000 373410000 KVESLQEEIAFLKK QDVDNASLARLDLERKVESLQEEIAFLKKL RKVESLQEEIAFLKKLHEEEIQELQAQIQE R K V K K L 1 0 0 0 0 1 3 0 0 1 2 3 0 1 0 1 0 0 0 1 0 0 14 2 1660.94 P08670 P08670 223 236 VIM Vimentin yes yes 2;3 4.3786E-15 188.26 By MS/MS By MS/MS 4.09 1.5 1 1 1 3 3 2 7 4 547280000 0 294480000 252800000 7292 476 7592 31006;31007;31008;31009;31010;31011;31012;31013;31014;31015;31016 26165;26166;26167;26168;26169;26170;26171 26171 7 0 95566000 37833000 KVESLWPIFR QKMREAETEPHEGKRKVESLWPIFRIHHQK HEGKRKVESLWPIFRIHHQKTRYIFDLFYK R K V F R I 0 1 0 0 0 0 1 0 0 1 1 1 0 1 1 1 0 1 0 1 0 0 10 1 1273.7183 P41223 P41223 42 51 BUD31 Protein BUD31 homolog yes yes 2;3 5.7826E-16 175.51 By MS/MS By MS/MS 8 0 4 2 2 17907000 0 6966400 10941000 7293 793 7593 31017;31018;31019;31020 26172;26173;26174;26175 26174 4 0 3169500 1677300 KVFDPVPVGVTK QILPLHSQIPREEQRKVFDPVPVGVTKVIL EQRKVFDPVPVGVTKVILSTNIAETSITIN R K V T K V 0 0 0 1 0 0 0 1 0 0 0 2 0 1 2 0 1 0 0 4 0 0 12 1 1284.7442 Q08211 Q08211 697 708 DHX9 ATP-dependent RNA helicase A yes yes 2;3 0.0016368 118.88 By MS/MS 2 0.707 1 2 1 4 43295000 0 0 43295000 7294 1182 7594 31021;31022;31023;31024 26176;26177 26176 2 0 0 9512800 KVGYTPDWIFLLR FAETGQVQKIVLYAKKVGYTPDWIFLLRNV AKKVGYTPDWIFLLRNVMRISPDQGQQFAQ K K V L R N 0 1 0 1 0 0 0 1 0 1 2 1 0 1 1 0 1 1 1 1 0 0 13 1 1606.8871 Q00610;P53675 Q00610 507 519 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 0.00059429 128.01 By MS/MS By MS/MS 1.8 0.748 2 2 1 1 4 23779000 0 5787000 17992000 7295 1125 7595 31025;31026;31027;31028;31029 26178;26179;26180 26180 3 0 2606000 3884800 KVIDDTNITR LAMRQSVENDIHGLRKVIDDTNITRLQLET IHGLRKVIDDTNITRLQLETEIEALKEELL R K V T R L 0 1 1 2 0 0 0 0 0 2 0 1 0 0 0 0 2 0 0 1 0 0 10 1 1173.6354 P05783 P05783 187 196 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 2.2248E-16 181.53 By MS/MS By MS/MS 4.25 1.85 1 1 2 2 1 1 4 4 194780000 0 5688400 189090000 7296 436 7596 31030;31031;31032;31033;31034;31035;31036;31037 26181;26182;26183;26184 26183 4 0 2108500 27160000 KVLDSFCEGLK ADAILGNPKVKAHGKKVLDSFCEGLKQLDD AHGKKVLDSFCEGLKQLDDLKGAFASLSEL K K V L K Q 0 0 0 1 1 0 1 1 0 0 2 2 0 1 0 1 0 0 0 1 0 0 11 1 1294.6591 CON__Q3SX09 CON__Q3SX09 121 131 yes yes 2 0.017833 90.827 By matching By MS/MS 9.33 0.471 2 1 1 2 28960000 7859600 0 21100000 + 7297 82 7597 31038;31039;31040 26185;26186 26185 2 4411600 0 33610000 KVLGAFSDGLAHLDNLK PDAVMGNPKVKAHGKKVLGAFSDGLAHLDN LGAFSDGLAHLDNLKGTFATLSELHCDKLH K K V L K G 2 0 1 2 0 0 0 2 1 0 4 2 0 1 0 1 0 0 0 1 0 0 17 1 1796.9785 P68871;P02042 P68871 67 83 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 3 7.6239E-07 151.41 By MS/MS 9 0.816 1 1 1 3 17225000 17225000 0 0 7298 1081 7598 31041;31042;31043 26187 26187 1 11904000 0 0 KVLLDGVQNPR RIPIEDGSGEVVLSRKVLLDGVQNPRAEDL VLSRKVLLDGVQNPRAEDLVGKSLYVSATV R K V P R A 0 1 1 1 0 1 0 1 0 0 2 1 0 0 1 0 0 0 0 2 0 0 11 1 1237.7143 P01024 P01024 305 315 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 0.004894 79.659 By MS/MS 9 0 1 1 5588500 5588500 0 0 7299 371 7599 31044 26188 26188 1 3136900 0 0 KVNPDLQVEVKPSIR EMHLKGRRHRLQYKKKVNPDLQVEVKPSIR KVNPDLQVEVKPSIRARKIQEEKMRKQMQK K K V I R A 0 1 1 1 0 1 1 0 0 1 1 2 0 0 2 1 0 0 0 3 0 0 15 2 1720.9836 Q96KR1 Q96KR1 613 627 ZFR Zinc finger RNA-binding protein yes yes 3 0.00018623 105.28 By MS/MS By matching 2.67 0.471 1 2 2 1 12298000 0 9541600 2756600 7300 1806 7600 31045;31046;31047 26189;26190 26190 2 0 4212500 534650 KVNVTVDYIRPASPATETVPAFSER MFEAREFLRKKLIGKKVNVTVDYIRPASPA PASPATETVPAFSERTCATVTIGGINIAEA K K V E R T 3 2 1 1 0 0 2 0 0 1 0 1 0 1 3 2 3 0 1 4 0 0 25 2 2746.429 Q7KZF4 Q7KZF4 414 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 4 0.021058 32.434 By MS/MS 2 0 1 1 10846000 0 0 10846000 7301 1518 7601 31048 26191 26191 1 0 0 2451100 KVPGVTAIELDEDTGTFR GLAIGTHGSNIQQARKVPGVTAIELDEDTG GVTAIELDEDTGTFRIYGESADAVKKARGF R K V F R I 1 1 0 2 0 0 2 2 0 1 1 1 0 1 1 0 3 0 0 2 0 0 18 1 1946.9949 P51114 P51114 246 263 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 2;3 2.8743E-08 147.26 By MS/MS By MS/MS 2.67 0.943 1 1 3 1 1 5 51382000 0 13281000 38102000 7302 887 7602 31049;31050;31051;31052;31053;31054 26192;26193;26194 26193 3 0 5661600 7308300 KVPQVSTPTLVEVSR GEYKFQNALLVRYTKKVPQVSTPTLVEVSR KVPQVSTPTLVEVSRNLGKVGSKCCKHPEA K K V S R N 0 1 0 0 0 1 1 0 0 0 1 1 0 0 2 2 2 0 0 4 0 0 15 1 1638.9305 CON__P02768-1;P02768;CON__P02769 CON__P02768-1 438 452 ALB Serum albumin no no 2;3 4.8842E-18 193.28 By MS/MS By MS/MS By MS/MS 5.41 2.81 5 6 6 6 6 6 6 5 4 6 20 17 19 6640900000 5018700000 963670000 658560000 + 7303 44;45 7603 31055;31056;31057;31058;31059;31060;31061;31062;31063;31064;31065;31066;31067;31068;31069;31070;31071;31072;31073;31074;31075;31076;31077;31078;31079;31080;31081;31082;31083;31084;31085;31086;31087;31088;31089;31090;31091;31092;31093;31094;31095;31096;31097;31098;31099;31100;31101;31102;31103;31104;31105;31106;31107;31108;31109;31110 26195;26196;26197;26198;26199;26200;26201;26202;26203;26204;26205;26206;26207;26208;26209;26210;26211;26212;26213;26214;26215;26216;26217;26218;26219;26220;26221;26222;26223;26224;26225;26226;26227;26228;26229;26230;26231;26232;26233;26234;26235;26236;26237;26238;26239;26240;26241;26242;26243;26244;26245;26246;26247;26248;26249;26250;26251;26252;26253;26254;26255;26256;26257;26258;26259;26260;26261;26262;26263;26264;26265;26266;26267;26268;26269;26270 26215 76 5235700000 1661300000 217410000 KVPVSVNLLSK RLLPSLIGRHFYQRKKVPVSVNLLSKNLSR YQRKKVPVSVNLLSKNLSREINDCIGGTVL K K V S K N 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 2 0 0 0 3 0 0 11 1 1182.7336 O76021 O76021 178 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.020999 88.681 By MS/MS 4.5 1.12 1 1 1 1 4 128400000 0 128400000 0 7304 295 7604 31111;31112;31113;31114 26271;26272 26272 2 0 44271000 0 KVPWFDQQNGR ERNGSSLAKIYTEAKKVPWFDQQNGRTYLK TEAKKVPWFDQQNGRTYLKYSIKALVQNDT K K V G R T 0 1 1 1 0 2 0 1 0 0 0 1 0 1 1 0 0 1 0 1 0 0 11 1 1373.684 Q92522 Q92522 76 86 H1FX Histone H1x yes yes 2;3 0.00050302 133.57 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 75831000 0 19081000 56750000 7305 1706 7605 31115;31116;31117;31118;31119 26273;26274;26275;26276;26277 26275 5 0 6605300 8876000 KVQHQDALQISDVVMASLLR DLQSLLCATLQNVLRKVQHQDALQISDVVM DALQISDVVMASLLRMFQSTAGSGGVQEDA R K V L R M 2 1 0 2 0 3 0 0 1 1 3 1 1 0 0 2 0 0 0 3 0 0 20 1 2250.2154 Q14974 Q14974 594 613 KPNB1 Importin subunit beta-1 yes yes 4 0.037464 27.523 By MS/MS 2 0 1 1 1170600 0 1170600 0 7306 1325 7606 31120 26278 26278 0 0 527140 0 KVQSDGQIVLVDDWIK MTLVTPLQLLLFASKKVQSDGQIVLVDDWI VQSDGQIVLVDDWIKLQISHEAAACITGLR K K V I K L 0 0 0 3 0 2 0 1 0 2 1 2 0 0 0 1 0 1 0 3 0 0 16 1 1841.9887 Q08211 Q08211 1074 1089 DHX9 ATP-dependent RNA helicase A yes yes 2;3 0.00023169 99.991 By MS/MS By MS/MS 2 0 2 1 1 19213000 0 5408300 13805000 7307 1182 7607 31121;31122 26279;26280 26280 2 0 2435400 3119600 KVSQPIEGHAASFAQFK QNRVVGAMQLYSVDRKVSQPIEGHAASFAQ SQPIEGHAASFAQFKMEGNAEESTLFCFAV R K V F K M 3 0 0 0 0 2 1 1 1 1 0 2 0 2 1 2 0 0 0 1 0 0 17 1 1843.9581 Q00610 Q00610 189 205 CLTC Clathrin heavy chain 1 yes yes 2;3;4 0.00051601 98.337 By MS/MS By MS/MS 1.44 0.497 5 4 4 5 123800000 0 29537000 94265000 7308 1125 7608 31123;31124;31125;31126;31127;31128;31129;31130;31131 26281;26282;26283;26284;26285;26286;26287;26288 26286 8 0 13753000 20479000 KVTHAVVTVPAYFNDAQR VLTKMKETAEAYLGKKVTHAVVTVPAYFND HAVVTVPAYFNDAQRQATKDAGTIAGLNVM K K V Q R Q 3 1 1 1 0 1 0 0 1 0 0 1 0 1 1 0 2 0 1 4 0 0 18 1 2015.0589 P11021 P11021 164 181 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.01558 44.788 By MS/MS 3 0 1 1 3678500 0 3678500 0 7309 516 7609 31132 26289 26289 1 0 1568200 0 KVTLGDTLTR SVEVALPPPAEHEVKKVTLGDTLTRRSISQ EHEVKKVTLGDTLTRRSISQQKSGVSITID K K V T R R 0 1 0 1 0 0 0 1 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 1 1102.6346 Q9UKV3 Q9UKV3 970 979 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.00022384 144.5 By MS/MS 2 0.816 1 1 1 3 28493000 0 0 28493000 7310 2184 7610 31133;31134;31135 26290;26291 26291 2 0 0 5903700 KVTQLDLDGPK LIDIENPNRVAQTTKKVTQLDLDGPKELSR QTTKKVTQLDLDGPKELSRREREEIEKQKA K K V P K E 0 0 0 2 0 1 0 1 0 0 2 2 0 0 1 0 1 0 0 1 0 0 11 1 1212.6714 Q13442 Q13442 95 105 PDAP1 28 kDa heat- and acid-stable phosphoprotein yes yes 2;3 0.00040363 135.86 By matching By MS/MS By MS/MS 6.5 0.5 3 3 1 2 3 49842000 1454700 5177400 43210000 7311 1249 7611 31136;31137;31138;31139;31140;31141 26292;26293;26294 26294 3 1937000 2548200 7500900 KVTSVVFHPSQDLVFSASPDATIR KSSEQILATLKGHTKKVTSVVFHPSQDLVF SQDLVFSASPDATIRIWSVPNASCVQVVRA K K V I R I 2 1 0 2 0 1 0 0 1 1 1 1 0 2 2 4 2 0 0 4 0 0 24 1 2600.3599 Q9UMS4 Q9UMS4 266 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3;4 9.3426E-32 185.28 By MS/MS By MS/MS 3.5 1.12 1 1 3 5 2 6 6 301650000 0 154040000 147610000 7312 2199 7612 31142;31143;31144;31145;31146;31147;31148;31149;31150;31151;31152;31153 26295;26296;26297;26298;26299;26300;26301 26301 7 0 52241000 24298000 KVVAEVYDQER HKAIQALNGRWFAGRKVVAEVYDQERFDNS FAGRKVVAEVYDQERFDNSDLSA_______ R K V E R F 1 1 0 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 3 0 0 11 1 1334.683 Q9UHX1 Q9UHX1 541 551 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2;3 4.5779E-05 148.91 By MS/MS 3.67 0.471 1 2 3 15035000 0 0 15035000 7313 2158 7613 31154;31155;31156 26302;26303 26302 2 0 0 2634500 KVVLLTGETSTDLK VYMDWYEKFQDRLNKKVVLLTGETSTDLKL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K K V L K L 0 0 0 1 0 0 1 1 0 0 3 2 0 0 0 1 3 0 0 2 0 0 14 1 1502.8556 O75643 O75643 1404 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 0.00030324 152.47 By MS/MS By MS/MS 1 0 2 1 1 17480000 0 0 17480000 7314 277 7614 31157;31158 26304;26305 26305 2 0 0 3766400 KVVNPLFEK KVAPAPAVVKKQEAKKVVNPLFEKRPKNFG KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K K V E K R 0 0 1 0 0 0 1 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 9 1 1072.6281 P62424 P62424 26 34 RPL7A 60S ribosomal protein L7a yes yes 2 1.188E-10 164.46 By MS/MS By MS/MS 3.86 1.81 1 1 1 1 1 2 1 6 523500000 0 167070000 356430000 7315 1026 7615 31159;31160;31161;31162;31163;31164;31165 26306;26307;26308 26306 3 0 57834000 54897000 KVVVVVPNEEDWK SGQRRKLLLFKTFSRKVVVVVPNEEDWKKR SRKVVVVVPNEEDWKKRLELRKEVEGDDVP R K V W K K 0 0 1 1 0 0 2 0 0 0 0 2 0 0 1 0 0 1 0 5 0 0 13 1 1539.8297 Q1KMD3 Q1KMD3 558 570 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 3 0.014662 62.528 By MS/MS 2.5 0.5 1 1 2 18644000 0 0 18644000 7316 1404 7616 31166;31167 26309 26309 1 0 0 4143200 KVVVVVPNEEDWKK SGQRRKLLLFKTFSRKVVVVVPNEEDWKKR RKVVVVVPNEEDWKKRLELRKEVEGDDVPE R K V K K R 0 0 1 1 0 0 2 0 0 0 0 3 0 0 1 0 0 1 0 5 0 0 14 2 1667.9247 Q1KMD3 Q1KMD3 558 571 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 3 0.021534 60.55 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 44741000 0 10087000 34654000 7317 1404 7617 31168;31169;31170 26310;26311 26311 2 0 4542400 7759000 KVWINTSDIILVGLR DGVKRLCHIRGKLRKKVWINTSDIILVGLR KVWINTSDIILVGLRDYQDNKADVILKYNA K K V L R D 0 1 1 1 0 0 0 1 0 3 2 1 0 0 0 1 1 1 0 2 0 0 15 1 1726.0141 P47813;O14602 P47813 68 82 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 0.025503 77.593 By MS/MS 8 0 1 1 4450300 0 0 4450300 7318 138 7618 31171 26312 26312 0 0 0 682280 KVWLDPNETNEIANANSR LQKRLASSVLRCGKKKVWLDPNETNEIANA LDPNETNEIANANSRQQIRKLIKDGLIIRK K K V S R Q 2 1 4 1 0 0 2 0 0 1 1 1 0 0 1 1 1 1 0 1 0 0 18 1 2070.013 P84098 P84098 21 38 RPL19 60S ribosomal protein L19 yes yes 3 2.8794E-09 124.84 By matching By MS/MS 7 0 2 1 1 13679000 0 1598100 12081000 7319 1111 7619 31172;31173 26313 26313 1 0 917640 2143700 KVYENYPTYDLTER ASANLEEVTMKQICKKVYENYPTYDLTERK KKVYENYPTYDLTERKDFIKTTVKELIS__ K K V E R K 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 0 2 0 3 1 0 0 14 1 1789.8523 P35659 P35659 349 362 DEK Protein DEK yes yes 2;3 1.3418E-18 173.6 By MS/MS 4.5 0.957 1 2 2 1 6 141010000 0 0 141010000 7320 758 7620 31174;31175;31176;31177;31178;31179 26314;26315;26316;26317;26318 26314 5 0 0 21732000 KWHEEVEIYR EVKQKVQPYLDEFQKKWHEEVEIYRQKVAP DEFQKKWHEEVEIYRQKVAPLGEEFREGAR K K W Y R Q 0 1 0 0 0 0 3 0 1 1 0 1 0 0 0 0 0 1 1 1 0 0 10 1 1387.6884 CON__P15497 CON__P15497 130 139 yes yes 2;3 3.6027E-05 146.81 By matching By MS/MS 7.6 0.8 3 1 1 1 4 65856000 10147000 0 55709000 + 7321 59 7621 31180;31181;31182;31183;31184 26319;26320;26321 26319 2 21868000 0 10532000 KWPQQVVQK KAEATGEKRPRGRPRKWPQQVVQKKPAQEE PRGRPRKWPQQVVQKKPAQEETEETSSQES R K W Q K K 0 0 0 0 0 3 0 0 0 0 0 2 0 0 1 0 0 1 0 2 0 0 9 1 1139.6451 P52926 P52926 82 90 HMGA2 High mobility group protein HMGI-C yes yes 2 0.00061212 138.55 By MS/MS By MS/MS 8 0.894 2 1 2 3 2 21582000 0 16960000 4621900 7322 915 7622 31185;31186;31187;31188;31189 26322;26323;26324;26325;26326;26327;26328 26323 7 0 9513200 820130 KWQEEMELYR EVKAKVQPYLDDFQKKWQEEMELYRQKVEP DDFQKKWQEEMELYRQKVEPLRAELQEGAR K K W Y R Q 0 1 0 0 0 1 3 0 0 0 1 1 1 0 0 0 0 1 1 0 0 0 10 1 1410.6602 P02647 P02647 131 140 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 3 0.0032167 83.862 By MS/MS 9 0 1 1 5971000 5971000 0 0 7323 389 7623 31190 26329 26329 1 3351500 0 0 KWQTMIEAHVDVK HGMDLTRDKMCSMVKKWQTMIEAHVDVKTT VKKWQTMIEAHVDVKTTDGYLLRLFCVGFT K K W V K T 1 0 0 1 0 1 1 0 1 1 0 2 1 0 0 0 1 1 0 2 0 0 13 1 1583.813 P61247 P61247 116 128 RPS3A 40S ribosomal protein S3a yes yes 3 0.0093619 67.648 By MS/MS By MS/MS 6 0 2 1 1 16698000 0 4701900 11997000 7324 988 7624 31191;31192 26330;26331 26330 2 0 1627600 1794800 KYAPTEAQLNAVDALIDSMSLAK EDLRQYMFSSLKNSKKYAPTEAQLNAVDAL LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K K Y A K K 5 0 1 2 0 1 1 0 0 1 3 2 1 0 1 2 1 0 1 1 0 0 23 1 2448.257 P13010 P13010 443 465 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 2.5766E-12 109.68 By MS/MS By MS/MS 2.8 0.4 1 4 2 3 29549000 0 6149400 23400000 7325 542 7625 31193;31194;31195;31196;31197 26332;26333;26334;26335 26334 4 0 2734000 4538400 KYASSANLHLPK EDKLNNELLAKFLEKKYASSANLHLPKLSI LEKKYASSANLHLPKLSISETYDLKSVLGD K K Y P K L 2 0 1 0 0 0 0 0 1 0 2 2 0 0 1 2 0 0 1 0 0 0 12 1 1327.7248 CON__P34955 CON__P34955 301 312 yes yes 3 0.0016354 95.273 By MS/MS By MS/MS 6.14 2.23 1 1 1 1 1 1 1 5 2 59589000 51320000 8269200 0 + 7326 64 7626 31198;31199;31200;31201;31202;31203;31204 26336;26337;26338 26336 3 51303000 24400000 0 KYAVLYQPLFDK QIEAKFYEEVHDLERKYAVLYQPLFDKRFE LERKYAVLYQPLFDKRFEIINAIYEPTEEE R K Y D K R 1 0 0 1 0 1 0 0 0 0 2 2 0 1 1 0 0 0 2 1 0 0 12 1 1483.8075 P55209 P55209 105 116 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 3 0.063193 38.584 By MS/MS 3.5 0.5 1 1 2 6398400 0 0 6398400 7327 940 7627 31205;31206 26339 26339 1 0 0 1075800 KYDAFLASESLIK KKLNKNKKLVKKLAKKYDAFLASESLIKQI AKKYDAFLASESLIKQIPRILGPGLNKAGK K K Y I K Q 2 0 0 1 0 0 1 0 0 1 2 2 0 1 0 2 0 0 1 0 0 0 13 1 1483.7922 P62906 P62906 106 118 RPL10A 60S ribosomal protein L10a yes yes 2;3 1.8498E-44 218.02 By MS/MS By MS/MS 7.11 0.737 2 4 3 4 5 507260000 0 164250000 343020000 7328 1049 7628 31207;31208;31209;31210;31211;31212;31213;31214;31215 26340;26341;26342;26343;26344;26345 26340 6 0 93388000 59714000 KYDEVLHMVR IDPTEFKFKLALINRKYDEVLHMVRNAKLV ALINRKYDEVLHMVRNAKLVGQSIIAYLQK R K Y V R N 0 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 1 2 0 0 10 1 1288.6598 P53621 P53621 607 616 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.044339 48.741 By MS/MS 2 0 1 1 3357300 0 3357300 0 7329 922 7629 31216 26346 26346 1 0 1511800 0 KYDTVLDILR TCNSMVLFDHVGCLKKYDTVLDILRDFFEL VGCLKKYDTVLDILRDFFELRLKYYGLRKE K K Y L R D 0 1 0 2 0 0 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 10 1 1234.6921 P11388 P11388 1011 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2 9.2613E-17 183.72 By MS/MS 1.5 0.5 1 1 2 52400000 0 0 52400000 7330 524 7630 31217;31218 26347;26348 26347 2 0 0 11438000 KYEAIQLTFK GYKSIMELMNVLELRKYEAIQLTFKQVSKN VLELRKYEAIQLTFKQVSKNFSEVFQKLVP R K Y F K Q 1 0 0 0 0 1 1 0 0 1 1 2 0 1 0 0 1 0 1 0 0 0 10 1 1239.6863 Q9UQE7 Q9UQE7 1025 1034 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.07377 74.849 By MS/MS 2 0 1 1 29399000 0 0 29399000 7331 2222 7631 31219 26349 26349 1 0 0 6643500 KYEDEINK SELNNMQDLVEDYKKKYEDEINKRTAAEND LVEDYKKKYEDEINKRTAAENDFVTLKKDV K K Y N K R 0 0 1 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 8 1 1037.5029 CON__P12035;P12035;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 273 280 KRT3;KRT76;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2 6.1258E-06 119.86 By MS/MS 1 0 1 1 0 0 0 0 + 7332 65;66;71;1135;54;86 7632 31220 26350 26350 1 0 0 0 KYEDEINKR SELNNMQDLVEDYKKKYEDEINKRTAAEND VEDYKKKYEDEINKRTAAENDFVTLKKDVD K K Y K R T 0 1 1 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 2 1193.6041 CON__P12035;P12035;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 273 281 KRT3;KRT76;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2 0.055769 136.27 By MS/MS 6.5 0.5 1 1 2 23219000 0 0 23219000 + 7333 65;66;71;1135;54;86 7633 31221;31222 26351 26351 1 0 0 4004400 KYELGRPAANTK RRKTGGKRKPYHKKRKYELGRPAANTKIGP KKRKYELGRPAANTKIGPRRIHTVRVRGGN R K Y T K I 2 1 1 0 0 0 1 1 0 0 1 2 0 0 1 0 1 0 1 0 0 0 12 2 1346.7306 P62241 P62241 26 37 RPS8 40S ribosomal protein S8 yes yes 3 0.017003 71.888 By matching By MS/MS By MS/MS 7 0 3 1 1 1 70835000 214110 44933000 25688000 7334 1008 7634 31223;31224;31225 26352;26353 26353 2 461450 25801000 4558200 KYEQGFITDPVVLSPK NCTPEFQANEVRKVKKYEQGFITDPVVLSP YEQGFITDPVVLSPKDRVRDVFEAKARHGF K K Y P K D 0 0 0 1 0 1 1 1 0 1 1 2 0 1 2 1 1 0 1 2 0 0 16 1 1819.972 P12268 P12268 109 124 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 3 0.023629 45.221 By MS/MS 4.5 0.5 1 1 2 8219800 0 8219800 0 7335 535 7635 31226;31227 26354 26354 1 0 2558900 0 KYETVIMPVFGIATPFHIATIK PKEPHIREMKIYIDKKYETVIMPVFGIATP PVFGIATPFHIATIKNISMSVEGDYTYLRI K K Y I K N 2 0 0 0 0 0 1 1 1 4 0 2 1 2 2 0 3 0 1 2 0 0 22 1 2475.36 Q9Y5B9 Q9Y5B9 534 555 SUPT16H FACT complex subunit SPT16 yes yes 3;4 2.2769E-09 91.565 By MS/MS By MS/MS 1.86 0.639 2 4 1 2 5 70664000 0 17701000 52962000 7336 2296 7636 31228;31229;31230;31231;31232;31233;31234 26355;26356;26357;26358;26359;26360 26355 6 0 7971200 11639000 KYETVQDILK TCNSMVLFDHMGCLKKYETVQDILKEFFDL MGCLKKYETVQDILKEFFDLRLSYYGLRKE K K Y L K E 0 0 0 1 0 1 1 0 0 1 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1235.6762 Q02880 Q02880 1032 1041 TOP2B DNA topoisomerase 2-beta yes yes 2 0.0001861 145.99 By MS/MS 1.5 0.5 1 1 2 26152000 0 0 26152000 7337 1150 7637 31235;31236 26361 26361 1 0 0 5693100 KYGGPPPDSVYSGQQPSVGTEIFVGK LERTGYTLDVTTGQRKYGGPPPDSVYSGQQ SGQQPSVGTEIFVGKIPRDLFEDELVPLFE R K Y G K I 0 0 0 1 0 2 1 5 0 1 0 2 0 1 4 3 1 0 2 3 0 0 26 1 2693.3337 O60506 O60506 143 168 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 3 5.0943E-29 135.62 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 37664000 0 26222000 11442000 7338 227 7638 31237;31238 26362;26363;26364 26362 3 0 8702000 2219300 KYGGPPPDSVYSGVQPGIGTEVFVGK LERTGYTLDVTTGQRKYGGPPPDSVYSGVQ SGVQPGIGTEVFVGKIPRDLYEDELVPLFE R K Y G K I 0 0 0 1 0 1 1 6 0 1 0 2 0 1 4 2 1 0 2 4 0 0 26 1 2634.333 O43390 O43390 146 171 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 3 1.3244E-16 102.69 By MS/MS By MS/MS 4.2 1.94 1 2 1 1 2 3 90086000 0 49277000 40810000 7339 195 7639 31239;31240;31241;31242;31243 26365;26366;26367;26368;26369 26365 5 0 20769000 7924700 KYLYEIAR VMCTAFHDNEETFLKKYLYEIARRHPYFYA NEETFLKKYLYEIARRHPYFYAPELLFFAK K K Y A R R 1 1 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 2 0 0 0 8 1 1054.5811 CON__P02768-1;P02768 CON__P02768-1 161 168 ALB Serum albumin yes no 2 0.0003032 141.83 By MS/MS 9 0.816 1 1 1 3 112790000 112790000 0 0 + 7340 44 7640 31244;31245;31246 26370;26371 26370 2 91255000 0 0 KYQELMNVK AALQQAKQDMARQLRKYQELMNVKLALDIE MARQLRKYQELMNVKLALDIEIATYRKLVE R K Y V K L 0 0 1 0 0 1 1 0 0 0 1 2 1 0 0 0 0 0 1 1 0 0 9 1 1151.6009 Q6KB66;CON__Q6KB66-1 Q6KB66 365 373 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.0080681 97.741 By MS/MS 9.5 0.5 1 1 2 3100300 3100300 0 0 + 7341 93 7641 31247;31248 26372 26372 1 2463800 0 0 KYQLAVTK SVFGRLFDLCHPIHKKYQLAVTKVFGRFIT LCHPIHKKYQLAVTKVFGRFITAIVVASEK K K Y T K V 1 0 0 0 0 1 0 0 0 0 1 2 0 0 0 0 1 0 1 1 0 0 8 1 949.55967 Q8NDV3 Q8NDV3 529 536 SMC1B Structural maintenance of chromosomes protein 1B yes yes 2 0.039219 82.426 By MS/MS 1.5 0.5 1 1 2 5850300 0 0 5850300 7342 1636 7642 31249;31250 26373 26373 1 0 0 1281900 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK ERQDEHGYISRCFTRKYTLPPGVDPTQVSS LSPEGTLTVEAPMPKLATQSNEITIPVTFE R K Y P K L 1 0 0 1 0 1 2 2 0 0 3 2 1 0 6 4 4 0 1 3 0 0 31 1 3225.6479 P04792 P04792 141 171 HSPB1 Heat shock protein beta-1 yes yes 3 4.2845E-13 77.276 By MS/MS By MS/MS 7 0 2 1 1 16728000 0 1601400 15127000 7343 417 7643 31251;31252 26374;26375;26376 26375 3 0 919550 2684100 KYVATLGVEVHPLVFHTNR KTTFVKRHLTGEFEKKYVATLGVEVHPLVF TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K K Y N R G 1 1 1 0 0 0 1 1 2 0 2 1 0 1 1 0 2 0 1 4 0 0 19 1 2179.1902 P62826 P62826 38 56 RAN GTP-binding nuclear protein Ran yes yes 3;4 1.7338E-09 140.2 By MS/MS 6.5 0.5 2 2 4 71200000 0 0 71200000 7344 1035 7644 31253;31254;31255;31256 26377;26378 26378 2 0 0 12299000 KYVIYIER YKGQQIGKVVQVYRKKYVIYIERVQREKAN VVQVYRKKYVIYIERVQREKANGTTVHVGI K K Y E R V 0 1 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 1 1082.6124 P61254;Q9UNX3 P61254 77 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.014388 95.909 By matching By MS/MS 7 0 2 1 1 40467000 0 4070600 36397000 7345 989 7645 31257;31258 26379 26379 1 0 2337400 6458300 KYVLENHPGTNSNYQMHLLK AAMNEPKTCSTTALKKYVLENHPGTNSNYQ NHPGTNSNYQMHLLKKTLQKCEKNGWMEQI K K Y L K K 0 0 3 0 0 1 1 1 2 0 3 2 1 0 1 1 1 0 2 1 0 0 20 1 2385.1899 Q5SSJ5 Q5SSJ5 366 385 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 4 0.0040001 51.942 By MS/MS 3.5 0.5 1 1 2 6570300 0 6570300 0 7346 1445 7646 31259;31260 26380 26380 1 0 2678200 0 KYVSQYYPK TRLCEPKEASYSLIRKYVSQYYPKLRVDIR SYSLIRKYVSQYYPKLRVDIRPQLLKNALQ R K Y P K L 0 0 0 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 3 1 0 0 9 1 1174.6023 Q5SSJ5 Q5SSJ5 283 291 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 4.0039E-06 153.08 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 59666000 0 14222000 45444000 7347 1445 7647 31261;31262;31263;31264;31265 26381;26382;26383 26381 3 0 5870800 8448400 KYWDVPPPGFEHITPMQYK GLIRSPRHEKKKKVRKYWDVPPPGFEHITP VPPPGFEHITPMQYKAMQAAGQIPATALLP R K Y Y K A 0 0 0 1 0 1 1 1 1 1 0 2 1 1 4 0 1 1 2 1 0 0 19 1 2332.1351 P26368 P26368 90 108 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 3 5.6903E-05 92.671 By MS/MS By MS/MS 4 0 2 1 1 22759000 0 7721400 15037000 7348 668 7648 31266;31267 26384;26385 26384 2 0 2562400 2456100 LAAAEETAVSPR LTLGLAKRVWSLERRLAAAEETAVSPRKSP ERRLAAAEETAVSPRKSPRPAGPQLFLPDP R L A P R K 4 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 1 0 0 1 0 0 12 0 1213.6303 Q9BUH6 Q9BUH6 139 150 C9orf142 Protein PAXX yes yes 2 0.00069519 121.83 By MS/MS 7 0 1 1 9179500 0 0 9179500 7349 1906 7649 31268 26386 26386 1 0 0 1628800 LAAAILGGVDQIHIK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK LAAAILGGVDQIHIKPGAKVLYLGAASGTT K L A I K P 3 0 0 1 0 1 0 2 1 3 2 1 0 0 0 0 0 0 0 1 0 0 15 0 1517.893 A6NHQ2;P22087 P22087 144 158 FBLL1;FBL rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1;rRNA 2-O-methyltransferase fibrillarin no no 2;3 0.00090241 90.653 By matching By MS/MS 6 0 3 1 2 21945000 709660 0 21235000 7350 627;14 7650 31269;31270;31271 26387;26388 26387 2 944920 0 3177000 LAAAILGGVDQIHIKPGAK DDKIEYRAWNPFRSKLAAAILGGVDQIHIK ILGGVDQIHIKPGAKVLYLGAASGTTVSHV K L A A K V 4 0 0 1 0 1 0 3 1 3 2 2 0 0 1 0 0 0 0 1 0 0 19 1 1871.0993 P22087 P22087 144 162 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2;3;4 2.1764E-09 126.95 By MS/MS By MS/MS 4.68 1.87 2 2 2 2 4 7 3 4 18 722360000 0 85013000 637340000 7351 627 7651 31272;31273;31274;31275;31276;31277;31278;31279;31280;31281;31282;31283;31284;31285;31286;31287;31288;31289;31290;31291;31292;31293 26389;26390;26391;26392;26393;26394;26395;26396;26397;26398;26399;26400;26401 26390 13 0 29423000 97056000 LAAAVSNFGYDLYR PVEEEDPFFKVPVNKLAAAVSNFGYDLYRV KLAAAVSNFGYDLYRVRSGESPTANVLLSP K L A Y R V 3 1 1 1 0 0 0 1 0 0 2 0 0 1 0 1 0 0 2 1 0 0 14 0 1558.778 CON__Q95121;P36955 CON__Q95121 52 65 SERPINF1 Pigment epithelium-derived factor yes no 2 0.045445 65.395 By matching By MS/MS 4.5 0.5 1 1 1 1 6551100 1483400 5067600 0 + 7352 97 7652 31294;31295 26402 26402 1 1157300 1306300 0 LAADDFR TTDNANILLQIDNARLAADDFRLKYENEVA LLQIDNARLAADDFRLKYENEVALRQSVEA R L A F R L 2 1 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 806.39227 P13645;CON__P13645;Q7Z3Y7;CON__Q7Z3Y7;CON__Q148H6;CON__Q2M2I5;Q2M2I5;Q14532;CON__Q14532;O76015;CON__A2AB72;CON__O76015;CON__O76014;CON__REFSEQ:XP_986630;O76014;CON__A2A5Y0;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;P13646;CON__ENSEMBL:ENSP00000377550;CON__Q14525;CON__Q9UE12;CON__Q15323;Q14525;Q15323;Q04695;CON__Q04695;CON__P02535-1;CON__Q6IFX2;CON__P08730-1;CON__P08727;P08727;CON__P05784;P05783 P13645 229 235 KRT10;KRT28;KRT24;KRT32;KRT38;KRT37;KRT14;KRT16;KRT13;KRT33B;KRT31;KRT17;KRT19;KRT18 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 24;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha8;Keratin, type I cuticular Ha7;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 18 no no 1;2 4.7241E-17 188.08 By MS/MS By MS/MS By MS/MS 5.9 2.77 3 4 2 3 7 4 4 5 4 5 19 8 14 13019000000 8435500000 583330000 3999900000 + 7353 56;35;73;53;436;51;91;548;48;36;52 7653 31296;31297;31298;31299;31300;31301;31302;31303;31304;31305;31306;31307;31308;31309;31310;31311;31312;31313;31314;31315;31316;31317;31318;31319;31320;31321;31322;31323;31324;31325;31326;31327;31328;31329;31330;31331;31332;31333;31334;31335;31336 26403;26404;26405;26406;26407;26408;26409;26410;26411;26412;26413;26414;26415;26416;26417;26418;26419;26420;26421;26422;26423;26424;26425;26426;26427;26428;26429;26430;26431;26432;26433;26434;26435;26436;26437;26438;26439;26440;26441;26442;26443;26444;26445 26424 43 8631800000 349600000 1585200000 LAADDFRLKYENEVALR TTDNANILLQIDNARLAADDFRLKYENEVA ADDFRLKYENEVALRQSVEADINGLRRVLD R L A L R Q 3 2 1 2 0 0 2 0 0 0 3 1 0 1 0 0 0 0 1 1 0 0 17 2 2022.0534 P13645;CON__P13645 P13645 229 245 KRT10 Keratin, type I cytoskeletal 10 yes no 3;4 0.00037138 92.211 By MS/MS 8.8 0.748 2 2 1 5 30088000 30088000 0 0 + 7354 56 7654 31337;31338;31339;31340;31341 26446;26447 26446 2 22249000 0 0 LAADHPFLK LSVAPKALETVQERKLAADHPFLKEMQDQG TVQERKLAADHPFLKEMQDQGENLYVVMEV K L A L K E 2 0 0 1 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 0 0 0 9 0 1010.5549 Q96QA5 Q96QA5 133 141 GSDMA Gasdermin-A yes yes 2 0.026205 78.377 By MS/MS 1 0 1 1 4809500 4809500 0 0 7355 1822 7655 31342 26448 26448 1 4809500 0 0 LAAEQELIR LEKQRQLAEGTAQQRLAAEQELIRLRAETE GTAQQRLAAEQELIRLRAETEQGEQQRQLL R L A I R L 2 1 0 0 0 1 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1041.5819 Q15149 Q15149 1846 1854 PLEC Plectin yes yes 2 3.3368E-07 157.34 By MS/MS By MS/MS 1 0 2 1 1 66125000 0 34008000 32117000 7356 1348 7656 31343;31344 26449;26450 26449 2 0 16623000 6920200 LAAFADALEFADEEKESPVEFTGHK LYTKSKTKMRNRRFRLAAFADALEFADEEK ADEEKESPVEFTGHKLIGVYTDFAFRITPR R L A H K L 5 0 0 2 0 0 5 1 1 0 2 2 0 3 1 1 1 0 0 1 0 0 25 1 2750.3075 Q5SY16 Q5SY16 471 495 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 4 8.707E-05 62.237 By MS/MS 3 0 1 1 5448500 0 0 5448500 7357 1446 7657 31345 26451 26451 1 0 0 1056700 LAAFGQLHK QQREDITQSAQHALRLAAFGQLHKVLGMDP AQHALRLAAFGQLHKVLGMDPLPSKMPKKP R L A H K V 2 0 0 0 0 1 0 1 1 0 2 1 0 1 0 0 0 0 0 0 0 0 9 0 983.55525 Q12906 Q12906 324 332 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.01716 84.097 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 104930000 0 76557000 28372000 7358 1211 7658 31346;31347;31348;31349;31350 26452;26453;26454 26452 3 0 32731000 5295500 LAAIGEATR AARQRAEAERVLAEKLAAIGEATRLKTEAE RVLAEKLAAIGEATRLKTEAEIALKEKEAE K L A T R L 3 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 0 0 0 9 0 900.50288 Q15149 Q15149 1976 1984 PLEC Plectin yes yes 2 0.0005603 126.52 By MS/MS By MS/MS 1 0 2 1 1 20127000 0 11553000 8574200 7359 1348 7659 31351;31352 26455;26456 26455 2 0 5646800 1847400 LAALADQWQFLVQK ERGACAGSEDAVKARLAALADQWQFLVQKS RLAALADQWQFLVQKSAEKSQKLKEANKQQ R L A Q K S 3 0 0 1 0 3 0 0 0 0 3 1 0 1 0 0 0 1 0 1 0 0 14 0 1629.8879 Q13813 Q13813 1633 1646 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 3.5517E-05 161.17 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 72915000 0 25983000 46931000 7360 1268 7660 31353;31354;31355;31356 26457;26458;26459 26459 3 0 12527000 10194000 LAALASDFSEDMLQEK TRYFAKKKTLLGLSKLAALASDFSEDMLQE AALASDFSEDMLQEKIEEMAEQERFLLHQE K L A E K I 3 0 0 2 0 1 2 0 0 0 3 1 1 1 0 2 0 0 0 0 0 0 16 0 1766.8397 Q8WUM0 Q8WUM0 976 991 NUP133 Nuclear pore complex protein Nup133 yes yes 2 1.0963E-05 153.54 By MS/MS 2 0 1 1 16506000 0 0 16506000 7361 1675 7661 31357 26460 26460 1 0 0 3730100 LAALEEQR EEDAEAGSEKEEEARLAALEEQRMEGKKPR EKEEEARLAALEEQRMEGKKPRVMAGTLKL R L A Q R M 2 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 928.49779 O00541 O00541 496 503 PES1 Pescadillo homolog yes yes 2 1.8416E-13 175.75 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 57524000 2905900 20447000 34171000 7362 127 7662 31358;31359;31360;31361 26461;26462 26462 2 3352700 8716700 6538500 LAALEQNVER PQRKTTNPLDLAVMRLAALEQNVERRYLRE LAVMRLAALEQNVERRYLREPLWPTHEVVL R L A E R R 2 1 1 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 Q9UIF9 Q9UIF9 1590 1599 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes yes 2 0.00048239 127.68 By matching By MS/MS 1 0 2 1 1 19921000 7925500 0 11996000 7363 2163 7663 31362;31363 26463 26463 1 7925500 0 2584700 LAALNPESNTAGLDIFAK EEFLEAVLCPPRYPKLAALNPESNTAGLDI LNPESNTAGLDIFAKFSAYIKNSNPALNDN K L A A K F 4 0 2 1 0 0 1 1 0 1 3 1 0 1 1 1 1 0 0 0 0 0 18 0 1843.968 O00299 O00299 96 113 CLIC1 Chloride intracellular channel protein 1 yes yes 2 7.2193E-07 110.38 By matching By MS/MS By MS/MS 7.33 0.943 1 3 1 1 1 2 3 18616000 1074100 4519200 13023000 7364 117 7664 31364;31365;31366;31367;31368;31369 26464;26465;26466 26464 3 2314900 1933300 2682100 LAALPNVYEVISK FAGAVSPQEEEEFRRLAALPNVYEVISKSI RRLAALPNVYEVISKSIAPSIFGGTDMKKA R L A S K S 2 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 1 2 0 0 13 0 1415.8024 P33992 P33992 325 337 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.018139 79.693 By matching By MS/MS By MS/MS 3.33 0.943 1 3 1 1 1 4 1 33108000 1297400 17147000 14663000 7365 732 7665 31370;31371;31372;31373;31374;31375 26467;26468;26469;26470 26468 4 1496900 7066800 2844000 LAALSASLAR GEGTYALDSESCMEKLAALSASLARVVVPA SCMEKLAALSASLARVVVPATEEEAEVDEF K L A A R V 4 1 0 0 0 0 0 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 10 0 971.57638 O00541 O00541 276 285 PES1 Pescadillo homolog yes yes 2 4.476E-05 150.24 By MS/MS By MS/MS 3.75 0.829 2 1 1 2 2 89255000 0 43756000 45500000 7366 127 7666 31376;31377;31378;31379 26471;26472 26471 2 0 18305000 8496900 LAAQFIPK QVILDGVKGGTKEKRLAAQFIPKFFKHFPE GGTKEKRLAAQFIPKFFKHFPELADSAINA R L A P K F 2 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 0 8 0 886.52764 Q9BZZ5 Q9BZZ5 44 51 API5 Apoptosis inhibitor 5 yes yes 2 0.023868 81.297 By MS/MS 4 0 1 1 9988500 0 9988500 0 7367 1947 7667 31380 26473 26473 1 0 3314800 0 LAAQSCALSLVR LGRRIFAREHGSNKKLAAQSCALSLVRQLY NKKLAAQSCALSLVRQLYHLGVVEAYSGLT K L A V R Q 3 1 0 0 1 1 0 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 12 0 1287.6969 Q08211 Q08211 237 248 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00070633 121.6 By matching By MS/MS 2 0.707 1 2 1 1 3 62965000 2621700 0 60343000 7368 1182 7668 31381;31382;31383;31384 26474;26475;26476 26474 3 3158800 0 13196000 LAAQSLDTSGLR RMAAESRRVLLLAGRLAAQSLDTSGLRHVQ AGRLAAQSLDTSGLRHVQLAFFPPGTVHPL R L A L R H 2 1 0 1 0 1 0 1 0 0 3 0 0 0 0 2 1 0 0 0 0 0 12 0 1230.6568 P07199 P07199 299 310 CENPB Major centromere autoantigen B yes yes 2 6.3922E-05 143.39 By MS/MS 3 0 1 1 10779000 0 10779000 0 7369 455 7669 31385 26477 26477 1 0 4595000 0 LAASASTQQLQEVK HQQSGSELALRRSQRLAASASTQQLQEVKA RLAASASTQQLQEVKAKLQQCKAELNSTTE R L A V K A 3 0 0 0 0 3 1 0 0 0 2 1 0 0 0 2 1 0 0 1 0 0 14 0 1472.7835 O95235 O95235 680 693 KIF20A Kinesin-like protein KIF20A yes yes 2 4.6864E-34 209.8 By MS/MS By MS/MS 2 0 2 1 1 12098000 0 3757900 8340500 7370 313 7670 31386;31387 26478;26479 26479 2 0 1692200 1884800 LAASEEETR RSNLAQVIRQEFEDRLAASEEETRQAKAEL QEFEDRLAASEEETRQAKAELATLQARQQL R L A T R Q 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 9 0 1004.4775 Q9UPN4 Q9UPN4 1008 1016 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.0025346 103.56 By MS/MS 2 0 1 1 1559800 0 1559800 0 7371 2215 7671 31388 26480 26480 1 0 702380 0 LAASGEGGLQELSGHFENQK DWALYTYEDGSDDLKLAASGEGGLQELSGH EGGLQELSGHFENQKVMYGFCSVKDSQAAL K L A Q K V 2 0 1 0 0 2 3 4 1 0 3 1 0 1 0 2 0 0 0 0 0 0 20 0 2070.997 Q16643 Q16643 43 62 DBN1 Drebrin yes yes 2;3 4.6449E-46 214.65 By MS/MS By MS/MS 2.43 1.59 2 3 1 1 2 5 175880000 0 33527000 142350000 7372 1395 7672 31389;31390;31391;31392;31393;31394;31395 26481;26482;26483;26484;26485 26485 5 0 15216000 29995000 LAASIAPEIYGHEDVKK REELRQIAEEDFYEKLAASIAPEIYGHEDV ASIAPEIYGHEDVKKALLLLLVGGVDQSPR K L A K K A 3 0 0 1 0 0 2 1 1 2 1 2 0 0 1 1 0 0 1 1 0 0 17 1 1839.9731 P33993 P33993 336 352 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.0023764 65.652 By matching By MS/MS 3 0 2 1 1 10720000 5696400 5023600 0 7373 733 7673 31396;31397 26486 26486 1 6572300 2141600 0 LAASLWLWK YFNKQPYPTRREIEKLAASLWLWKSDIASH RREIEKLAASLWLWKSDIASHFSNKRKKCV K L A W K S 2 0 0 0 0 0 0 0 0 0 3 1 0 0 0 1 0 2 0 0 0 0 9 0 1086.6226 Q9H2P0 Q9H2P0 789 797 ADNP Activity-dependent neuroprotector homeobox protein yes yes 2 0.01835 83.313 By MS/MS 1.5 0.5 1 1 2 5611900 0 0 5611900 7374 1975 7674 31398;31399 26487 26487 1 0 0 1250200 LAATNALLNSLEFTK IIQGMRKEEPSNNVKLAATNALLNSLEFTK LAATNALLNSLEFTKANFDKESERHFIMQV K L A T K A 3 0 2 0 0 0 1 0 0 0 4 1 0 1 0 1 2 0 0 0 0 0 15 0 1604.8774 Q14974 Q14974 192 206 KPNB1 Importin subunit beta-1 yes yes 2 1.6604E-58 233.32 By MS/MS By MS/MS By MS/MS 3.6 1.96 1 3 2 1 2 1 1 4 5 103170000 5394900 31911000 65861000 7375 1325 7675 31400;31401;31402;31403;31404;31405;31406;31407;31408;31409 26488;26489;26490;26491;26492;26493;26494 26489 7 6500200 13533000 13193000 LAAVDATVNQVLASR AAASEVKEQTKGKVKLAAVDATVNQVLASR LAAVDATVNQVLASRYGIRGFPTIKIFQKG K L A S R Y 4 1 1 1 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 15 0 1526.8417 Q15084 Q15084 217 231 PDIA6 Protein disulfide-isomerase A6 yes yes 2 2.6275E-34 207.88 By MS/MS 5 0 1 1 6506800 0 6506800 0 7376 1344 7676 31410 26495 26495 1 0 1677200 0 LAAVQLLQFLAPK SEVTAVFTDKDANVRLAAVQLLQFLAPKIR VRLAAVQLLQFLAPKIRAEQISPFFPLVSA R L A P K I 3 0 0 0 0 2 0 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 13 0 1410.8599 Q9NXF1 Q9NXF1 116 128 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.00017732 149.72 By MS/MS By MS/MS 3.62 2 1 2 2 1 1 1 4 4 25273000 0 6297900 18975000 7377 2089 7677 31411;31412;31413;31414;31415;31416;31417;31418 26496;26497;26498;26499;26500 26496 4 0 2670300 3780900 LACMEEFQK PTCIQLLDSSNWKERLACMEEFQKAVELMD SNWKERLACMEEFQKAVELMDRTEMPCQAL R L A Q K A 1 0 0 0 1 1 2 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 9 0 1154.51 Q14008 Q14008 617 625 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.018424 83.265 By MS/MS 1 0 1 1 8462400 0 0 8462400 7378 1279 7678 31419 26501 26501 1 0 0 1823300 LADALQELR LVEIDNGKQREFESRLADALQELRAQHEDQ REFESRLADALQELRAQHEDQVEQYKKELE R L A L R A 2 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1027.5662 P02545 P02545 241 249 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.4672E-122 240.09 By MS/MS By MS/MS By MS/MS 3.2 1.78 2 2 3 1 2 1 5 4 580070000 22997000 91376000 465690000 7379 387 7679 31420;31421;31422;31423;31424;31425;31426;31427;31428;31429 26502;26503;26504;26505;26506;26507;26508;26509 26506 8 26534000 38498000 91087000 LADDLSTLQEK RALQQVQEKEVRAQKLADDLSTLQEKMAAT RAQKLADDLSTLQEKMAATSKEVARLETLV K L A E K M 1 0 0 2 0 1 1 0 0 0 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1231.6296 Q14980 Q14980 898 908 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00067388 117.7 By MS/MS 1 0 1 1 55828000 0 0 55828000 7380 1327 7680 31430 26510 26510 1 0 0 12029000 LADFGLAR LKPQNLLIDDKGTIKLADFGLARAFGIPIR DDKGTIKLADFGLARAFGIPIRVYTHEVVT K L A A R A 2 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 861.47085 P06493;Q00526;Q00535;P11802;Q00534;Q96Q40;O94921;Q07002;Q00536;Q00537;Q9NYV4;Q14004;P24941;P50750 P06493 144 151 CDK1;CDK3;CDK5;CDK4;CDK6;CDK15;CDK14;CDK18;CDK16;CDK17;CDK12;CDK13;CDK2;CDK9 Cyclin-dependent kinase 1;Cyclin-dependent kinase 3;Cyclin-dependent-like kinase 5;Cyclin-dependent kinase 4;Cyclin-dependent kinase 6;Cyclin-dependent kinase 15;Cyclin-dependent kinase 14;Cyclin-dependent kinase 18;Cyclin-dependent kinase 16;Cyclin-dependent kinase 17;Cyclin-dependent kinase 12;Cyclin-dependent kinase 13;Cyclin-dependent kinase 2;Cyclin-dependent kinase 9 no no 2 4.8888E-06 158.08 By MS/MS By MS/MS By MS/MS 5.8 0.98 1 3 1 1 2 2 46389000 6140000 11846000 28402000 7381 443;654;882 7681 31431;31432;31433;31434;31435 26511;26512;26513;26514 26513 4 8175400 4100800 4340000 LADFGVLHR MFDHRPRSWRELPLRLADFGVLHRNELSGA RELPLRLADFGVLHRNELSGALTGLTRVRR R L A H R N 1 1 0 1 0 0 0 1 1 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1026.5611 P26639 P26639 434 442 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.012896 96.19 By matching By matching By MS/MS 2 0.816 1 1 1 1 1 1 26238000 17012000 3702500 5523300 7382 672 7682 31436;31437;31438 26515 26515 0 17012000 1667300 1071300 LADLFGWSQLIYNHITTR KGEKLLRCKLAAFYRLADLFGWSQLIYNHI LFGWSQLIYNHITTRVNSEQEHFLIVPFGL R L A T R V 1 1 1 1 0 1 0 1 1 2 3 0 0 1 0 1 2 1 1 0 0 0 18 0 2147.1164 P35611 P35611 155 172 ADD1 Alpha-adducin yes yes 3 2.8594E-09 147.64 By MS/MS 3 0.816 1 1 1 3 8177500 0 0 8177500 7383 755 7683 31439;31440;31441 26516;26517 26516 2 0 0 1600400 LADLTGPIIPK SNAMMNNNDLVRKRRLADLTGPIIPKCRSG RKRRLADLTGPIIPKCRSGV__________ R L A P K C 1 0 0 1 0 0 0 1 0 2 2 1 0 0 2 0 1 0 0 0 0 0 11 0 1136.6805 P28289 P28289 344 354 TMOD1 Tropomodulin-1 yes yes 2 0.050205 81.972 By MS/MS 5 0 1 1 3591300 0 3591300 0 7384 689 7684 31442 26518 26518 0 0 925730 0 LADMHSTEISLQQR EKNRSFSNAARVLSRLADMHSTEISLQQRL RLADMHSTEISLQQRLEYIARAILSAKSST R L A Q R L 1 1 0 1 0 2 1 0 1 1 2 0 1 0 0 2 1 0 0 0 0 0 14 0 1627.7988 O75694 O75694 1101 1114 NUP155 Nuclear pore complex protein Nup155 yes yes 3 0.0047478 71.506 By MS/MS 2 0.816 1 1 1 3 19385000 0 0 19385000 7385 281 7685 31443;31444;31445 26519 26519 1 0 0 4135400 LADPAVTDFPAGK RKQETKLKLMARYGRLADPAVTDFPAGKGY GRLADPAVTDFPAGKGYPCKTCKIVLNSIE R L A G K G 3 0 0 2 0 0 0 1 0 0 1 1 0 1 2 0 1 0 0 1 0 0 13 0 1300.6663 Q9UL40 Q9UL40 225 237 ZNF346 Zinc finger protein 346 yes yes 2 0.0075538 93.258 By MS/MS By MS/MS 6 0 2 1 1 10851000 0 3894700 6956000 7386 2187 7686 31446;31447 26520;26521 26520 2 0 1348200 1040700 LAEAEETAR TNKTLAAEMQELRVRLAEAEETARTAERQK QELRVRLAEAEETARTAERQKSQLQRLLQE R L A A R T 3 1 0 0 0 0 3 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 9 0 988.48254 Q8N163 Q8N163 868 876 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 0.0091054 89.698 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 2536800 0 1166800 1370000 7387 1598 7687 31448;31449 26522;26523 26522 2 0 525430 265720 LAEASASAAYK AKQMELEQAVEHIAKLAEASASAAYKADAP HIAKLAEASASAAYKADAPEGLAPEDRDKP K L A Y K A 5 0 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1080.5451 Q96T58 Q96T58 2181 2191 SPEN Msx2-interacting protein yes yes 2 0.036884 82.749 By matching By MS/MS By MS/MS 1 0 3 1 1 1 22511000 4818100 2123300 15569000 7388 1839 7688 31450;31451;31452 26524;26525 26524 1 4818100 1037800 3354600 LAEDEAFQRR IALKEKEAENERLRRLAEDEAFQRRRLEEQ ERLRRLAEDEAFQRRRLEEQAAQHKADIEE R L A R R R 2 2 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1233.6102 Q15149 Q15149 2006 2015 PLEC Plectin yes yes 3 0.062403 51.927 By MS/MS 1 0 1 1 1608100 0 1608100 0 7389 1348 7689 31453 26526 26526 0 0 785990 0 LAEDEGDSEPEAVGQSR GHPYVRRKRKKFPDRLAEDEGDSEPEAVGQ EDEGDSEPEAVGQSRGRRQKK_________ R L A S R G 2 1 0 2 0 1 4 2 0 0 1 0 0 0 1 2 0 0 0 1 0 0 17 0 1787.781 Q9UIG0 Q9UIG0 1461 1477 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 1.0278E-36 210.41 By MS/MS 1 0 1 1 11706000 0 0 11706000 7390 2164 7690 31454 26527 26527 1 0 0 2522200 LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK QPFAQDTSSVGPDRKLAEEEDLFDSAHPEE LDLASESTAHAQSSKADSLLAVVKREPAEQ K L A S K A 5 0 0 4 0 1 6 1 2 0 4 1 0 1 1 5 1 0 0 0 0 0 32 0 3427.5175 Q14151;Q15424 Q15424 254 285 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 4 2.6137E-07 56.663 By MS/MS 1.5 0.5 1 1 2 150350000 0 0 150350000 7391 1364;1285 7691 31455;31456 26528;26529 26529 2 0 0 33671000 LAEEQLR ILEENNRKIAEAQAKLAEEQLRIVEEQRKI KIAEAQAKLAEEQLRIVEEQRKIHEERMKL K L A L R I 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 857.46068 Q9NWB6 Q9NWB6 219 225 ARGLU1 Arginine and glutamate-rich protein 1 yes yes 2 0.062014 74.439 By MS/MS 5 0 1 1 2623400 0 0 2623400 7392 2077 7692 31457 26530 26530 1 0 0 365920 LAEIGAPIQGNREELVER PGHYGAWAAQELQAKLAEIGAPIQGNREEL IGAPIQGNREELVERLQSYTRQTGIVLNRP K L A E R L 2 2 1 0 0 1 4 2 0 2 2 0 0 0 1 0 0 0 0 1 0 0 18 1 1993.0593 Q13435 Q13435 36 53 SF3B2 Splicing factor 3B subunit 2 yes yes 2;3 3.3379E-09 137.44 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 58649000 0 16542000 42107000 7393 1248 7693 31458;31459;31460;31461 26531;26532;26533 26531 3 0 7449100 9418000 LAEISDVWEEMK LESEHPDQAQAILSRLAEISDVWEEMKTTL LSRLAEISDVWEEMKTTLKNREASLGEASK R L A M K T 1 0 0 1 0 0 3 0 0 1 1 1 1 0 0 1 0 1 0 1 0 0 12 0 1448.6857 Q01082 Q01082 1037 1048 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 6.9304E-06 159.83 By MS/MS By MS/MS 1 0 2 1 1 36948000 0 8450000 28498000 7394 1128 7694 31462;31463 26534;26535 26535 2 0 4130200 6140400 LAELEEALQK AEQRGELALKDARNKLAELEEALQKAKQDM DARNKLAELEEALQKAKQDMARLLREYQEL K L A Q K A 2 0 0 0 0 1 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1142.6183 CON__P13647;P13647 CON__P13647 432 441 KRT5 Keratin, type II cytoskeletal 5 yes no 2 1.084E-29 201.07 By MS/MS By matching By MS/MS 5.73 3.13 2 2 1 1 2 2 1 2 2 9 2 4 735570000 617460000 4294900 113820000 + 7395 58 7695 31464;31465;31466;31467;31468;31469;31470;31471;31472;31473;31474;31475;31476;31477;31478 26536;26537;26538;26539;26540;26541;26542;26543;26544;26545;26546;26547 26543 10 566590000 1990200 44414000 LAELEEFINGPNNAHIQQVGDR YVETELIFALAKTNRLAELEEFINGPNNAH INGPNNAHIQQVGDRCYDEKMYDAAKLLYN R L A D R C 2 1 3 1 0 2 3 2 1 2 2 0 0 1 1 0 0 0 0 1 0 0 22 0 2463.2142 Q00610 Q00610 1183 1204 CLTC Clathrin heavy chain 1 yes yes 3 5.9839E-22 160.67 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 56367000 0 6406600 49960000 7396 1125 7696 31479;31480;31481 26548;26549;26550 26549 3 0 2885000 10934000 LAELQEQLK SDSGSSDSEEERATRLAELQEQLKAVHEQL EERATRLAELQEQLKAVHEQLAALSQAPVN R L A L K A 1 0 0 0 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 9 0 1070.5972 Q15059;O60885 Q15059 463 471 BRD3;BRD4 Bromodomain-containing protein 3;Bromodomain-containing protein 4 no no 2 0.0005802 116.73 By MS/MS 2 0 1 1 33444000 0 0 33444000 7397 1342;239 7697 31482 26551 26551 1 0 0 7557800 LAELQEQLR EESESSDSEEERAHRLAELQEQLRAVHEQL EERAHRLAELQEQLRAVHEQLAALSQGPIS R L A L R A 1 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1098.6033 P25440 P25440 520 528 BRD2 Bromodomain-containing protein 2 yes yes 2 3.3307E-17 183.74 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 58538000 0 7102800 51435000 7398 658 7698 31483;31484;31485;31486 26552;26553;26554 26552 3 0 3198500 11020000 LAELSDYR KKAVAMSKRYGSDRRLAELSDYRRLSESQL RYGSDRRLAELSDYRRLSESQLSFRRSPTK R L A Y R R 1 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 8 0 965.48181 Q96PK6 Q96PK6 608 615 RBM14 RNA-binding protein 14 yes yes 2 0.00066657 126.67 By MS/MS 3 0 1 1 27164000 0 0 27164000 7399 1818 7699 31487 26555 26555 1 0 0 5268600 LAELSDYRR KKAVAMSKRYGSDRRLAELSDYRRLSESQL YGSDRRLAELSDYRRLSESQLSFRRSPTKS R L A R R L 1 2 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 9 1 1121.5829 Q96PK6 Q96PK6 608 616 RBM14 RNA-binding protein 14 yes yes 2 2.0005E-07 161.68 By MS/MS 3 0 1 1 25888000 0 0 25888000 7400 1818 7700 31488 26556 26556 1 0 0 5021000 LAEMPADSGYPAYLGAR STSRWAEALREISGRLAEMPADSGYPAYLG EMPADSGYPAYLGARLASFYERAGRVKCLG R L A A R L 4 1 0 1 0 0 1 2 0 0 2 0 1 0 2 1 0 0 2 0 0 0 17 0 1780.8454 P38606 P38606 365 381 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 8.5975E-06 121.68 By MS/MS 3 0 1 1 4912600 0 0 4912600 7401 773 7701 31489 26557 26557 1 0 0 952810 LAEPLMDLPK PLGTPVVVRPANLRRLAEPLMDLPKFTRPI ANLRRLAEPLMDLPKFTRPIVRTRSCRCPP R L A P K F 1 0 0 1 0 0 1 0 0 0 3 1 1 0 2 0 0 0 0 0 0 0 10 0 1125.6104 P13292;P06485 P13292 59 68 yes no 2 0.031114 72.485 By MS/MS 9 0 1 1 0 0 0 0 7402 442 7702 31490 26558 26558 160 1 0 0 0 LAEPSQLLK LLATQVEGQATNLQRLAEPSQLLKSAIVHL ATNLQRLAEPSQLLKSAIVHLINYQDDAEL R L A L K S 1 0 0 0 0 1 1 0 0 0 3 1 0 0 1 1 0 0 0 0 0 0 9 0 997.5808 P14923 P14923 116 124 JUP Junction plakoglobin yes yes 2 0.00060258 116.25 By MS/MS By MS/MS By matching 5.69 2.81 1 1 2 1 1 1 2 1 2 1 10 1 2 119260000 107410000 4862200 6983500 7403 567 7703 31491;31492;31493;31494;31495;31496;31497;31498;31499;31500;31501;31502;31503 26559;26560;26561;26562;26563;26564;26565;26566;26567 26563 9 112910000 2072800 1886600 LAESLLALSQQEELADLPK ______________________________ LLALSQQEELADLPKDYLLSESEDEGDNDG R L A P K D 3 0 0 1 0 2 3 0 0 0 6 1 0 0 1 2 0 0 0 0 0 0 19 0 2067.11 Q9BVJ6 Q9BVJ6 6 24 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 1.1115E-08 142.38 By MS/MS 2 0 1 1 13448000 0 0 13448000 7404 1915 7704 31504 26568 26568 1 0 0 3039000 LAETQEEISAEVAAK FIADCDRRTEVAKKRLAETQEEISAEVAAK LAETQEEISAEVAAKAERVHELNEEIGKLL R L A A K A 4 0 0 0 0 1 4 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 15 0 1587.7992 Q9Y383 Q9Y383 108 122 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes yes 2 0.00050109 110.08 By MS/MS 4 0 1 1 15344000 0 0 15344000 7405 2259 7705 31505 26569 26569 1 0 0 2506200 LAETQNIAPSFVK TLKSRTRRLQSTSERLAETQNIAPSFVKGF ERLAETQNIAPSFVKGFLLRDRGSDVESLD R L A V K G 2 0 1 0 0 1 1 0 0 1 1 1 0 1 1 1 1 0 0 1 0 0 13 0 1416.7613 Q96TA2 Q96TA2 225 237 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes yes 2 0.00031578 138.63 By MS/MS 4 0 1 1 6826100 0 6826100 0 7406 1842 7706 31506 26570 26570 1 0 2265300 0 LAETVFNFQEK ALVWESYKLDPYVQRLAETVFNFQEKVDDL YVQRLAETVFNFQEKVDDLLIIEEKIDLEV R L A E K V 1 0 1 0 0 1 2 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 11 0 1324.6663 Q14204 Q14204 836 846 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.014744 87.149 By MS/MS 1 0 1 1 3260000 0 3260000 0 7407 1292 7707 31507 26571 26571 1 0 1593400 0 LAEVEAALEK EERLAEQQRAEERERLAEVEAALEKQRQLA EERERLAEVEAALEKQRQLAEAHAQAKAQA R L A E K Q 3 0 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1071.5812 Q15149 Q15149 1499 1508 PLEC Plectin yes yes 2 0.012477 91.584 By MS/MS 1 0 1 1 0 0 0 0 7408 1348 7708 31508 26572 26572 1 0 0 0 LAEWVLTQR ENLEGKYLSFEAEEKLAEWVLTQREQQLPV FEAEEKLAEWVLTQREQQLPVNEETLFQKA K L A Q R E 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 9 0 1114.6135 Q7Z3K3 Q7Z3K3 1031 1039 POGZ Pogo transposable element with ZNF domain yes yes 2 0.00060258 116.25 By matching By MS/MS 1.33 0.471 2 1 1 2 29088000 18557000 0 10531000 7409 1530 7709 31509;31510;31511 26573 26573 1 18557000 0 2343100 LAFLLFK PYLPPFPARGSGIHRLAFLLFKQDQPIDFS ARGSGIHRLAFLLFKQDQPIDFSEDARPSP R L A F K Q 1 0 0 0 0 0 0 0 0 0 3 1 0 2 0 0 0 0 0 0 0 0 7 0 850.53166 Q96DV4 Q96DV4 268 274 MRPL38 39S ribosomal protein L38, mitochondrial yes yes 2 0.027632 94.669 By MS/MS By MS/MS 5 0 2 1 1 3819200 0 1283400 2535800 7410 1769 7710 31512;31513 26574;26575 26575 2 0 330820 353690 LAFNSLLEK SSTKRSTTLDAGNIKLAFNSLLEKAEARER DAGNIKLAFNSLLEKAEAREREREKEEARK K L A E K A 1 0 1 0 0 0 1 0 0 0 3 1 0 1 0 1 0 0 0 0 0 0 9 0 1033.5808 O75400 O75400 719 727 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 0.00066671 129.42 By matching By MS/MS 1.75 0.829 2 1 1 1 3 36005000 0 993140 35011000 7411 258 7711 31514;31515;31516;31517 26576;26577 26577 2 0 485430 7720500 LAFYNPGR LARQNMDLGFKLLKKLAFYNPGRNIFLSPL GFKLLKKLAFYNPGRNIFLSPLSISTAFSM K L A G R N 1 1 1 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 0 0 0 8 0 936.48175 Q8IW75 Q8IW75 63 70 SERPINA12 Serpin A12 yes yes 2 0.013338 89.673 By MS/MS By matching 4 3.54 1 1 1 1 3 1 14606000 13520000 1086700 0 7412 1573 7712 31518;31519;31520;31521 26578;26579 26578 2 18017000 463270 0 LAGEELAGEEAPQEK KVNKAGMEKEKAEEKLAGEELAGEEAPQEK LAGEELAGEEAPQEKAEDKPSTDLSAPVNG K L A E K A 3 0 0 0 0 1 5 2 0 0 2 1 0 0 1 0 0 0 0 0 0 0 15 0 1569.7522 Q7Z4V5 Q7Z4V5 575 589 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 2 5.892E-12 182.71 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 168980000 0 12348000 156630000 7413 1533 7713 31522;31523;31524;31525;31526 26580;26581;26582 26581 3 0 5560500 33772000 LAGGNDVGIFVAGVLEDSPAAK MKLVKFRKGDSVGLRLAGGNDVGIFVAGVL GIFVAGVLEDSPAAKEGLEEGDQILRVNNV R L A A K E 4 0 1 2 0 0 1 4 0 1 2 1 0 1 1 1 0 0 0 3 0 0 22 0 2099.0899 Q07157 Q07157 437 458 TJP1 Tight junction protein ZO-1 yes yes 3 0.00077155 62.589 By MS/MS 1 0 1 1 2626000 0 0 2626000 7414 1177 7714 31527 26583 26583 1 0 0 565810 LAGLEYVLHFTALNGK LLIDFFRGPTVSNIRLAGLEYVLHFTALNG AGLEYVLHFTALNGKIYFRSYKLLLKKSGC R L A G K I 2 0 1 0 0 0 1 2 1 0 4 1 0 1 0 0 1 0 1 1 0 0 16 0 1744.9512 Q9H7B2 Q9H7B2 177 192 RPF2 Ribosome production factor 2 homolog yes yes 2;3 8.3448E-13 181.31 By matching By MS/MS By MS/MS 5.83 0.898 1 4 1 1 2 3 14948000 1376700 2975200 10596000 7415 1991 7715 31528;31529;31530;31531;31532;31533 26584;26585;26586 26586 3 1074100 1029900 1594100 LAGNEQVTR VSRVQLPPEIQLAQRLAGNEQVTRDRAVRK IQLAQRLAGNEQVTRDRAVRKLRKYIVART R L A T R D 1 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 9 0 986.51451 P56182 P56182 17 25 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.05583 69.825 By MS/MS 4 0 1 1 708900 0 0 708900 7416 948 7716 31534 26587 26587 1 0 0 115790 LAGSLLTQALESHAEGFR ESGSAQAGGNQALPRLAGSLLTQALESHAE SLLTQALESHAEGFRERFEKTFQLKEKGLS R L A F R E 3 1 0 0 0 1 2 2 1 0 4 0 0 1 0 2 1 0 0 0 0 0 18 0 1898.985 Q13724 Q13724 352 369 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2;3 6.2876E-18 184 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 39067000 0 3841200 35226000 7417 1266 7717 31535;31536;31537;31538 26588;26589;26590 26589 3 0 1729700 6738800 LAGTQPLEVLEAVQR NQYLTDPKFVERTLRLAGTQPLEVLEAVQR LAGTQPLEVLEAVQRSLVLQRPQTWADCVT R L A Q R S 2 1 0 0 0 2 2 1 0 0 3 0 0 0 1 0 1 0 0 2 0 0 15 0 1622.8992 P22314 P22314 679 693 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.00029724 145.09 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 14808000 1071700 2990900 10745000 7418 630 7718 31539;31540;31541;31542 26591;26592;26593 26591 2 1291300 1346800 2365400 LAGVTLGQR EQPIFLTPCMRDLIKLAGVTLGQRRAQARR MRDLIKLAGVTLGQRRAQARRQTIRHSTRE K L A Q R R 1 1 0 0 0 1 0 2 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 913.53451 P26358 P26358 587 595 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00051371 125.25 By MS/MS 1 0 1 1 10278000 0 10278000 0 7419 667 7719 31543 26594 26594 1 0 5023900 0 LAHEVGWK VVRLKPTRKFAYLGRLAHEVGWKYQAVTAT KFAYLGRLAHEVGWKYQAVTATLEEKRKEK R L A W K Y 1 0 0 0 0 0 1 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 938.4974 P40429 P40429 141 148 RPL13A 60S ribosomal protein L13a yes yes 2 0.019232 84.916 By MS/MS By matching 7 0 2 1 1 132080000 0 39202000 92878000 7420 784 7720 31544;31545 26595 26595 1 0 22510000 16481000 LAHYIDR SRLQEKEELRELNDRLAHYIDRVRALELEN ELRELNDRLAHYIDRVRALELENDRLLLKI R L A D R V 1 1 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 7 0 886.4661 Q03252 Q03252 57 63 LMNB2 Lamin-B2 yes yes 2 0.024818 97.068 By MS/MS By MS/MS 3 0 2 1 1 22594000 0 5469600 17124000 7421 1156 7721 31546;31547 26596;26597 26597 2 0 2331700 3321300 LAIALGDAVNHPTPMAAAANEVYK FKPDFYLKYIQKDLRLAIALGDAVNHPTPM NHPTPMAAAANEVYKRAKALDQSDNDMSAV R L A Y K R 7 0 2 1 0 0 1 1 1 1 2 1 1 0 2 0 1 0 1 2 0 0 24 0 2436.2471 Q49A26 Q49A26 509 532 GLYR1 Putative oxidoreductase GLYR1 yes yes 3 8.1623E-05 66.52 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 26994000 0 12199000 14795000 7422 1417 7722 31548;31549 26598;26599 26599 2 0 4048400 2869500 LAILGIHNEVSK HEQFKATLPDADKERLAILGIHNEVSKIVQ KERLAILGIHNEVSKIVQTYHVNMAGTNPY R L A S K I 1 0 1 0 0 0 1 1 1 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1292.7452 P12814 P12814 566 577 ACTN1 Alpha-actinin-1 yes yes 2;3 0.012798 89.9 By MS/MS By MS/MS 2 0 3 1 2 29392000 0 6453100 22939000 7423 540 7723 31550;31551;31552 26600;26601;26602 26600 3 0 2905900 5183800 LAIMMMK DKQRLAQEEESEAKRLAIMMMKKREKYLYQ EEESEAKRLAIMMMKKREKYLYQKIMFGKR R L A M K K 1 0 0 0 0 0 0 0 0 1 1 1 3 0 0 0 0 0 0 0 0 0 7 0 836.43222 O00541 O00541 535 541 PES1 Pescadillo homolog yes yes 2 0.072036 72.021 By MS/MS 3 0 1 1 6960500 0 6960500 0 7424 127 7724 31553 26603 26603 1 0 2967300 0 LALADAGDTVEDANFVEAMADAGILR TLTQAIDKFSADGMRLALADAGDTVEDANF DANFVEAMADAGILRLYTWVEWVKEMVANW R L A L R L 7 1 1 4 0 0 2 2 0 1 3 0 1 1 0 0 1 0 0 2 0 0 26 0 2647.2799 Q9P2J5 Q9P2J5 741 766 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 8.3281E-16 101.96 By MS/MS 2 0 1 1 1572600 0 0 1572600 7425 2124 7725 31554 26604 26604 1 0 0 355380 LALDLEIATYR LARLLRDYQELMNTKLALDLEIATYRTLLE MNTKLALDLEIATYRTLLEGEESRMSGECA K L A Y R T 2 1 0 1 0 0 1 0 0 1 3 0 0 0 0 0 1 0 1 0 0 0 11 0 1276.7027 P04264;CON__P04264 P04264 473 483 KRT1 Keratin, type II cytoskeletal 1 yes no 2 7.7576E-90 254.82 By MS/MS By matching By MS/MS 5.05 2.92 3 3 2 2 3 1 2 3 1 2 13 2 7 883190000 391730000 2447500 489010000 + 7426 413 7726 31555;31556;31557;31558;31559;31560;31561;31562;31563;31564;31565;31566;31567;31568;31569;31570;31571;31572;31573;31574;31575;31576 26605;26606;26607;26608;26609;26610;26611;26612;26613;26614;26615;26616;26617;26618;26619;26620;26621;26622;26623;26624;26625;26626;26627;26628;26629;26630 26608 26 336190000 1123100 92529000 LALDMEIHAYR MQQQLDEYQELLDIKLALDMEIHAYRKLLE LDIKLALDMEIHAYRKLLEGEEERLRLSPS K L A Y R K 2 1 0 1 0 0 1 0 1 1 2 0 1 0 0 0 0 0 1 0 0 0 11 0 1330.6704 P02545 P02545 367 377 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 7.3026E-54 174.02 By MS/MS By MS/MS 3.42 0.759 1 6 4 1 4 8 168000000 0 20355000 147640000 7427 387 7727;7728 31577;31578;31579;31580;31581;31582;31583;31584;31585;31586;31587;31588 26631;26632;26633;26634;26635;26636;26637;26638;26639;26640;26641 26639 122 11 0 7797800 27829000 LALDMEINAYR MQQQLAEYQELLDVKLALDMEINAYRKLLE LDVKLALDMEINAYRKLLEGEEERLKLSPS K L A Y R K 2 1 1 1 0 0 1 0 0 1 2 0 1 0 0 0 0 0 1 0 0 0 11 0 1307.6544 Q03252 Q03252 382 392 LMNB2 Lamin-B2 yes yes 2 0.00032805 128.36 By matching By MS/MS 2.33 0.471 2 1 1 2 21621000 1631300 0 19990000 7428 1156 7729 31589;31590;31591 26642 26642 1 1965500 0 3944600 LALDMEINAYRK MQQQLAEYQELLDVKLALDMEINAYRKLLE DVKLALDMEINAYRKLLEGEEERLKLSPSP K L A R K L 2 1 1 1 0 0 1 0 0 1 2 1 1 0 0 0 0 0 1 0 0 0 12 1 1435.7493 Q03252 Q03252 382 393 LMNB2 Lamin-B2 yes yes 3 3.553E-05 131.82 By MS/MS 3 0 1 1 6446300 0 0 6446300 7429 1156 7730 31592 26643 26643 1 0 0 1250300 LALDMEISAYR MQQQLNDYEQLLDVKLALDMEISAYRKLLE LDVKLALDMEISAYRKLLEGEEERLKLSPS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 0 11 0 1280.6435 P20700 P20700 368 378 LMNB1 Lamin-B1 yes yes 2 1.0369E-46 221.94 By MS/MS By MS/MS 3 1.12 1 1 4 1 1 3 5 132570000 0 13133000 119440000 7430 619 7731;7732 31593;31594;31595;31596;31597;31598;31599;31600 26644;26645;26646;26647;26648;26649;26650;26651 26649 269 8 0 5653900 22706000 LALDMEISAYRK MQQQLNDYEQLLDVKLALDMEISAYRKLLE DVKLALDMEISAYRKLLEGEEERLKLSPSP K L A R K L 2 1 0 1 0 0 1 0 0 1 2 1 1 0 0 1 0 0 1 0 0 0 12 1 1408.7384 P20700 P20700 368 379 LMNB1 Lamin-B1 yes yes 3 0.0018472 93.345 By matching By MS/MS By MS/MS 2.5 0.5 3 3 1 3 2 41929000 1635700 11408000 28885000 7431 619 7733;7734 31601;31602;31603;31604;31605;31606 26652;26653;26654 26654 269 3 1970800 4911300 5602400 LALDVEIATYR LARLLRDYQELMNVKLALDVEIATYRKLLE MNVKLALDVEIATYRKLLEGEECRMSGDLS K L A Y R K 2 1 0 1 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 11 0 1262.6871 P02538;CON__P02538;CON__P04259;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908 CON__P35908 477 487 KRT6A;KRT3;KRT5;KRT6C;KRT76;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2 1.776E-46 217.64 By MS/MS By MS/MS By MS/MS 4.53 2.78 3 1 2 2 2 2 1 1 1 8 1 6 308500000 152570000 2062900 153860000 + 7432 65;66;68;37;47;58;69;71;1135;54 7735 31607;31608;31609;31610;31611;31612;31613;31614;31615;31616;31617;31618;31619;31620;31621 26655;26656;26657;26658;26659;26660;26661;26662;26663;26664;26665;26666;26667;26668;26669;26670;26671;26672;26673;26674;26675 26672 21 128200000 1008300 30079000 LALDVEIATYRK LARLLRDYQELMNVKLALDVEIATYRKLLE NVKLALDVEIATYRKLLEGEECRMSGDLSS K L A R K L 2 1 0 1 0 0 1 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 12 1 1390.782 P02538;CON__P02538;CON__P04259;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908 CON__P35908 477 488 KRT6A;KRT3;KRT5;KRT6C;KRT76;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.0969E-24 155.06 By MS/MS By MS/MS 4.55 3.17 3 1 1 2 2 2 6 5 92641000 64062000 0 28579000 + 7433 65;66;68;37;47;58;69;71;1135;54 7736 31622;31623;31624;31625;31626;31627;31628;31629;31630;31631;31632 26676;26677;26678;26679;26680;26681;26682;26683 26678 7 48451000 0 6029500 LALEAEVSELR LEQARRGKGAWEKTRLALEAEVSELRAELS EKTRLALEAEVSELRAELSSLQTARQEGEQ R L A L R A 2 1 0 0 0 0 3 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1228.6663 Q7Z406 Q7Z406 1244 1254 MYH14 Myosin-14 yes yes 2 0.00032712 121.73 By matching By MS/MS By MS/MS 1 0 3 1 1 1 6016000 387480 2901200 2727300 7434 1531 7737 31633;31634;31635 26684;26685 26684 2 387480 1418100 587640 LALFQAIGK ERATTGYPDPYGGEKLALFQAIGKEVVDRA PYGGEKLALFQAIGKEVVDRALGQSWLEVQ K L A G K E 2 0 0 0 0 1 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 959.5804 P58107 P58107 131 139 EPPK1 Epiplakin yes yes 2 0.0029901 101.64 By MS/MS 1 0 1 1 8640800 0 8640800 0 7435 958 7738 31636 26686 26686 1 0 4223500 0 LALGIPLPELR ASKATGYPLAYVAAKLALGIPLPELRNSVT VAAKLALGIPLPELRNSVTGGTAAFEPSVD K L A L R N 1 1 0 0 0 0 1 1 0 1 4 0 0 0 2 0 0 0 0 0 0 0 11 0 1190.7387 P27708 P27708 709 719 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.0013398 110.87 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 23215000 0 14503000 8712200 7436 681 7739 31637;31638;31639;31640;31641 26687;26688;26689;26690 26688 4 0 6979200 1876700 LALGQINIAK YADLMNILYDKDHYKLALGQINIAKNLVDN KDHYKLALGQINIAKNLVDNVAKDYVRLMK K L A A K N 2 0 1 0 0 1 0 1 0 2 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1039.639 Q9BZE4 Q9BZE4 94 103 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 2.9564E-05 151.29 By MS/MS By MS/MS By MS/MS 4.33 2.13 3 2 1 1 3 2 134820000 4474400 52311000 78035000 7437 1941 7740 31642;31643;31644;31645;31646;31647 26691;26692;26693;26694;26695;26696 26691 6 5162500 22931000 14948000 LALHSGMDYAIMTGGDVAPMGR MYGPPGTGKTLFAKKLALHSGMDYAIMTGG DYAIMTGGDVAPMGREGVTAMHKLFDWANT K L A G R E 3 1 0 2 0 0 0 4 1 1 2 0 3 0 1 1 1 0 1 1 0 0 22 0 2262.0595 Q5T9A4;Q9NVI7 Q9NVI7 413 434 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 3 0.0024121 52.541 By MS/MS 3.5 0.5 1 1 2 9712400 0 9712400 0 7438 2066;1456 7741 31648;31649 26697 26697 1 0 3834200 0 LALLEEAR ERISLKLANEDKEQKLALLEEARTAVGKEA NEDKEQKLALLEEARTAVGKEAGELRTGLQ K L A A R T 2 1 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 Q5TZA2 Q5TZA2 1247 1254 CROCC Rootletin yes yes 2 0.0053842 99.375 By MS/MS 3 0 1 1 12577000 0 0 12577000 7439 1458 7742 31650 26698 26698 1 0 0 2439400 LALLLSQFVGSQSVR ISEACSLAQQSGDHRLALLLSQFVGSQSVR LALLLSQFVGSQSVRELLTMQLVDWHQLQA R L A V R E 1 1 0 0 0 2 0 1 0 0 4 0 0 1 0 3 0 0 0 2 0 0 15 0 1616.925 P52948 P52948 1358 1372 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2;3 8.8926E-08 171.92 By MS/MS 2 0.707 1 2 1 4 22822000 0 0 22822000 7440 916 7743 31651;31652;31653;31654 26699;26700;26701 26699 3 0 0 5005200 LALLNEK EKDAQIAMMQQRIDRLALLNEKQAASPLEP MMQQRIDRLALLNEKQAASPLEPKELEELR R L A E K Q 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 Q14980 Q14980 261 267 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0047267 128.38 By matching By MS/MS By MS/MS 1 0 3 1 1 1 43080000 3458800 12500000 27122000 7441 1327 7744 31655;31656;31657 26702;26703 26702 2 3458800 6109800 5843800 LALNQISQISMK PGSLDKIAVVTADGKLALNQISQISMKSPQ DGKLALNQISQISMKSPQLILVNMASFPEC K L A M K S 1 0 1 0 0 2 0 0 0 2 2 1 1 0 0 2 0 0 0 0 0 0 12 0 1344.7435 Q96E11 Q96E11 128 139 MRRF Ribosome-recycling factor, mitochondrial yes yes 2 8.8011E-18 188.87 By matching By MS/MS By MS/MS 7 0 3 1 1 1 27308000 891910 9092600 17323000 7442 1770 7745 31658;31659;31660 26704;26705 26704 2 1922300 5221000 3073900 LALPGHAESYNPPPEYLLSEEER NAVLGRHKMHVPAPKLALPGHAESYNPPPE SYNPPPEYLLSEEERLAWEQQEPGERKLSF K L A E R L 2 1 1 0 0 0 5 1 1 0 4 0 0 0 4 2 0 0 2 0 0 0 23 0 2610.2602 Q14137 Q14137 305 327 BOP1 Ribosome biogenesis protein BOP1 yes yes 3 1.1129E-09 92.95 By matching By MS/MS 2.33 0.471 2 1 1 2 34849000 2682000 0 32167000 7443 1283 7746 31661;31662;31663 26706;26707 26706 2 3231500 0 7019400 LALPQSDASLLSR ______________________________ QRLALPQSDASLLSRDEVASLLFDPKEAAT R L A S R D 2 1 0 1 0 1 0 0 0 0 4 0 0 0 1 3 0 0 0 0 0 0 13 0 1369.7565 Q9H583 Q9H583 11 23 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00026528 144.28 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 48594000 0 23669000 24925000 7444 1984 7747 31664;31665;31666;31667 26708;26709 26708 2 0 11512000 5343900 LALQLHPDRNPDDPQAQEK PRSASIKDIKKAYRKLALQLHPDRNPDDPQ LHPDRNPDDPQAQEKFQDLGAAYEVLSDSE K L A E K F 2 1 1 3 0 3 1 0 1 0 3 1 0 0 3 0 0 0 0 0 0 0 19 1 2184.0923 Q9UBS4 Q9UBS4 48 66 DNAJB11 DnaJ homolog subfamily B member 11 yes yes 3 0.00012029 87.24 By MS/MS 5 0 1 1 11629000 0 0 11629000 7445 2134 7748 31668 26710 26710 1 0 0 1622000 LALQQDLTSMAPGLVIQAVR EVYIELFDQIDENLKLALQQDLTSMAPGLV DLTSMAPGLVIQAVRVTKPNIPEAIRRNYE K L A V R V 3 1 0 1 0 3 0 1 0 1 4 0 1 0 1 1 1 0 0 2 0 0 20 0 2123.1773 O94905 O94905 150 169 ERLIN2 Erlin-2 yes yes 2;3 2.3958E-13 128.31 By MS/MS By MS/MS 5 0 3 1 2 11380000 0 1847600 9532600 7446 304 7749 31669;31670;31671 26711;26712;26713 26712 2 0 476260 1329600 LALSICEYSLDLFMR NPIYGPNTASQDQIKLALSICEYSLDLFMR LALSICEYSLDLFMREWLNGVSLEIYICDS K L A M R E 1 1 0 1 1 0 1 0 0 1 4 0 1 1 0 2 0 0 1 0 0 0 15 0 1829.9056 P12577 P12577 1566 1580 yes yes 4 0.026908 37.55 By MS/MS By matching 3 0 2 1 1 4989800 4125700 0 864010 7447 539 7750 31672;31673 26714 26714 0 4760200 0 167580 LALSLFR EIEEGEIVQPEEEPRLALSLFRPGGRAARP VQPEEEPRLALSLFRPGGRAARPTPAASAT R L A F R P 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 7 0 818.50142 Q9H7N4 Q9H7N4 405 411 SCAF1 Splicing factor, arginine/serine-rich 19 yes yes 2 0.070278 69.432 By MS/MS By matching 3.25 0.829 1 1 2 3 1 62191000 61639000 0 552270 7448 1993 7751 31674;31675;31676;31677 26715 26715 0 69218000 0 90204 LALSQNQQSSGAAGPTGK LLAEVERRIRRGHARLALSQNQQSSGAAGP SQNQQSSGAAGPTGKNEEKIQVLTDKIDVL R L A G K N 3 0 1 0 0 3 0 3 0 0 2 1 0 0 1 3 1 0 0 0 0 0 18 0 1713.8646 O95232 O95232 107 124 LUC7L3 Luc7-like protein 3 yes yes 2;3 6.9787E-65 235.25 By MS/MS By MS/MS 3.6 1.11 1 3 4 2 5 5 229220000 0 44120000 185100000 7449 312 7752 31678;31679;31680;31681;31682;31683;31684;31685;31686;31687 26716;26717;26718;26719;26720;26721;26722;26723;26724 26717 9 0 15123000 29821000 LALSQNQQSSGAAGPTGKNEEK LLAEVERRIRRGHARLALSQNQQSSGAAGP QSSGAAGPTGKNEEKIQVLTDKIDVLLQQI R L A E K I 3 0 2 0 0 3 2 3 0 0 2 2 0 0 1 3 1 0 0 0 0 0 22 1 2214.0877 O95232 O95232 107 128 LUC7L3 Luc7-like protein 3 yes yes 3 2.3255E-09 93.5 By MS/MS 4 0 1 1 6721100 0 6721100 0 7450 312 7753 31688 26725 26725 1 0 2230500 0 LALSVGTDK HKGQVTFLSIHPSGKLALSVGTDKTLRTWN IHPSGKLALSVGTDKTLRTWNLVEGRSAFI K L A D K T 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 902.5073 Q9NWT1 Q9NWT1 137 145 PAK1IP1 p21-activated protein kinase-interacting protein 1 yes yes 2 0.023126 80.165 By MS/MS 5 0 1 1 6439700 0 6439700 0 7451 2079 7754 31689 26726 26726 1 0 1660000 0 LALVISELEGK GREKFKSRGVGELARLALVISELEGKAQQP ELARLALVISELEGKAQQPAAELMQDTRDF R L A G K A 1 0 0 0 0 0 2 1 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1170.686 Q12899 Q12899 235 245 TRIM26 Tripartite motif-containing protein 26 yes yes 2 0.00021316 136.57 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 8049400 0 1485300 6564100 7452 1208 7755 31690;31691 26727;26728 26728 1 0 492930 1273100 LALYNLLAYVK DTIGQQLEFLTTKSRLALYNLLAYVKHLKG TKSRLALYNLLAYVKHLKGQNKDALECLEQ R L A V K H 2 0 1 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 2 1 0 0 11 0 1279.754 Q13325 Q13325 51 61 IFIT5 Interferon-induced protein with tetratricopeptide repeats 5 yes yes 2 0.0041112 103.56 By MS/MS 4 0 1 1 1475600 0 1475600 0 7453 1238 7756 31692 26729 26729 1 0 489700 0 LAMQEFMILPVGAANFR PAFNVINGGSHAGNKLAMQEFMILPVGAAN MQEFMILPVGAANFREAMRIGAEVYHNLKN K L A F R E 3 1 1 0 0 1 1 1 0 1 2 0 2 2 1 0 0 0 0 1 0 0 17 0 1906.9797 P06733 P06733 163 179 ENO1 Alpha-enolase yes yes 2;3 3.0998E-19 186.46 By MS/MS By MS/MS By MS/MS 5.44 1.5 3 2 3 1 2 6 1 43047000 4182800 24861000 14003000 7454 448 7757;7758 31693;31694;31695;31696;31697;31698;31699;31700;31701 26730;26731;26732;26733;26734;26735;26736;26737 26737 163 8 3140800 6879000 2287100 LAMQLEEQASR AKHFSALRDVIKALRLAMQLEEQASRQISS KALRLAMQLEEQASRQISSKKRPQ______ R L A S R Q 2 1 0 0 0 2 2 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 0 1274.6289 Q99661 Q99661 706 716 KIF2C Kinesin-like protein KIF2C yes yes 2 0.02735 80.102 By MS/MS 2.5 0.5 1 1 2 11688000 0 0 11688000 7455 1857 7759 31702;31703 26738 26738 1 0 0 2328300 LANQFAIYKPVTDFFLQLVDAGK QLEPAVEKISIMAERLANQFAIYKPVTDFF KPVTDFFLQLVDAGKVDDARALLQRCGAIA R L A G K V 3 0 1 2 0 2 0 1 0 1 3 2 0 3 1 0 1 0 1 2 0 0 23 1 2597.3894 P42704 P42704 1244 1266 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.00031118 65.901 By MS/MS 2 0 1 1 16263000 0 0 16263000 7456 808 7760 31704 26739 26739 1 0 0 3675200 LAPAQYIR SQKVAAAMPVRAADKLAPAQYIRYTPSQQG PVRAADKLAPAQYIRYTPSQQGVAFNSGAK K L A I R Y 2 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 0 8 0 930.5287 Q13573 Q13573 171 178 SNW1 SNW domain-containing protein 1 yes yes 2 0.00011112 146.21 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 51842000 0 26098000 25744000 7457 1259 7761 31705;31706;31707;31708 26740;26741;26742;26743 26740 4 0 10307000 4854600 LAPASNMTSQRPVSSTGINFDNPSVQK PGAPSQGLFGQPSSRLAPASNMTSQRPVSS VSSTGINFDNPSVQKALDTLIQSGPALSHL R L A Q K A 2 1 3 1 0 2 0 1 0 1 1 1 1 1 3 5 2 0 0 2 0 0 27 1 2845.4029 Q9HCD5 Q9HCD5 516 542 NCOA5 Nuclear receptor coactivator 5 yes yes 3 8.7235E-27 117.82 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 31535000 0 18269000 13266000 7458 2010 7762 31709;31710;31711 26744;26745 26744 2 0 6892200 2573000 LAPDYDALDVANK NTLIRPDGEKKAYVRLAPDYDALDVANKIG VRLAPDYDALDVANKIGII___________ R L A N K I 3 0 1 3 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 13 0 1403.6933 P62750 P62750 140 152 RPL23A 60S ribosomal protein L23a yes yes 2 0.00026583 132.32 By MS/MS By MS/MS 6.67 2.58 1 1 1 3 1 2 5 4 881100000 0 150620000 730480000 7459 1031 7763 31712;31713;31714;31715;31716;31717;31718;31719;31720 26746;26747;26748;26749;26750;26751;26752;26753;26754 26748 9 0 104930000 145760000 LAPITSDPTEATAVGAVEASFK EAAIYHLQLFEELRRLAPITSDPTEATAVG PTEATAVGAVEASFKCCSGAIIVLTKSGRS R L A F K C 5 0 0 1 0 0 2 1 0 1 1 1 0 1 2 2 3 0 0 2 0 0 22 0 2174.1107 P14618 P14618 401 422 PKM Pyruvate kinase PKM yes yes 2 8.0012E-20 132.44 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 34328000 0 6639800 27689000 7460 559 7764 31721;31722;31723 26755;26756;26757 26756 3 0 2203500 4730800 LAPLAEDVR LKARISASAEELRQRLAPLAEDVRGNLRGN EELRQRLAPLAEDVRGNLRGNTEGLQKSLA R L A V R G 2 1 0 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 9 0 982.54475 P06727 P06727 267 275 APOA4 Apolipoprotein A-IV yes yes 2 0.0079014 91.853 By MS/MS 9.5 0.5 1 1 2 14642000 14642000 0 0 7461 446 7765 31724;31725 26758 26758 1 9452600 0 0 LAPPLVTLLSAEPELQYVALR MLSKDLDYYGTLLKKLAPPLVTLLSAEPEL TLLSAEPELQYVALRNINLIVQKRPEILKH K L A L R N 3 1 0 0 0 1 2 0 0 0 6 0 0 0 3 1 1 0 1 2 0 0 21 0 2292.3093 Q10567 Q10567 284 304 AP1B1 AP-1 complex subunit beta-1 yes yes 3 0.00016983 70.986 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 8770200 0 793060 7977200 7462 1193 7766 31726;31727;31728 26759;26760 26760 2 0 357130 1736600 LAPPLVTLLSGEPEVQYVALR LLPKDSDYYNMLLKKLAPPLVTLLSGEPEV TLLSGEPEVQYVALRNINLIVQKRPEILKQ K L A L R N 2 1 0 0 0 1 2 1 0 0 5 0 0 0 3 1 1 0 1 3 0 0 21 0 2264.278 P63010 P63010 284 304 AP2B1 AP-2 complex subunit beta yes yes 2;3 2.4061E-11 112.82 By MS/MS By MS/MS 2.67 0.745 3 2 1 2 4 14627000 0 3508900 11118000 7463 1057 7767 31729;31730;31731;31732;31733;31734 26761;26762;26763;26764;26765;26766 26765 6 0 1580100 2212100 LAPTLSQLDR HYDPEQVINNILEERLAPTLSQLDRNLDRE ILEERLAPTLSQLDRNLDREMKPDPTPLLT R L A D R N 1 1 0 1 0 1 0 0 0 0 3 0 0 0 1 1 1 0 0 0 0 0 10 0 1112.619 Q9H1I8 Q9H1I8 510 519 ASCC2 Activating signal cointegrator 1 complex subunit 2 yes yes 2 0.0058761 96.034 By MS/MS 2.5 0.5 1 1 2 5146100 0 5146100 0 7464 1969 7768 31735;31736 26767 26767 1 0 2288000 0 LAQAAQSSVATITR DTKVLVQNAAGSQEKLAQAAQSSVATITRL KLAQAAQSSVATITRLADVVKLGAASLGAE K L A T R L 4 1 0 0 0 2 0 0 0 1 1 0 0 0 0 2 2 0 0 1 0 0 14 0 1415.7732 Q9Y490 Q9Y490 2044 2057 TLN1 Talin-1 yes yes 2 5.2226E-25 202.65 By MS/MS By MS/MS 1 0 2 1 1 15665000 0 5192600 10472000 7465 2284 7769 31737;31738 26768;26769 26769 2 0 2538100 2256400 LAQAEAAGLHK TDTTVKFVVKMTEEKLAQAEAAGLHKVFKL TEEKLAQAEAAGLHKVFKLQTTLTCNSMVL K L A H K V 4 0 0 0 0 1 1 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1107.6037 Q02880 Q02880 998 1008 TOP2B DNA topoisomerase 2-beta yes yes 2 0.001995 108.98 By MS/MS 2 0.816 1 1 1 3 7819400 0 0 7819400 7466 1150 7770 31739;31740;31741 26770 26770 1 0 0 1630700 LAQAEEQLEQETR ARARHKMTIAALESKLAQAEEQLEQETRER SKLAQAEEQLEQETRERILSGKLVRRAEKR K L A T R E 2 1 0 0 0 3 4 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 13 0 1543.7478 Q7Z406 Q7Z406 1840 1852 MYH14 Myosin-14 yes yes 2 3.5833E-72 242.45 By MS/MS By MS/MS 1 0 2 1 1 14993000 0 7226400 7766800 7467 1531 7771 31742;31743 26771;26772 26771 2 0 3532200 1673500 LAQALHEMR LVEVDSGRQIEYEYKLAQALHEMREQHDAQ IEYEYKLAQALHEMREQHDAQVRLYKEELE K L A M R E 2 1 0 0 0 1 1 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1067.5546 P20700 P20700 242 250 LMNB1 Lamin-B1 yes yes 2 6.7176E-11 164.57 By MS/MS By MS/MS By MS/MS 3 1.12 1 1 4 1 1 1 1 6 275550000 11547000 37932000 226070000 7468 619 7772;7773 31744;31745;31746;31747;31748;31749;31750;31751 26773;26774;26775;26776;26777;26778;26779 26777 270 7 13323000 16170000 41325000 LAQALHEMREQHDAQVR LVEVDSGRQIEYEYKLAQALHEMREQHDAQ QALHEMREQHDAQVRLYKEELEQTYHAKLE K L A V R L 3 2 0 1 0 3 2 0 2 0 2 0 1 0 0 0 0 0 0 1 0 0 17 1 2031.0068 P20700 P20700 242 258 LMNB1 Lamin-B1 yes yes 4;5 0.00028444 89.506 By MS/MS By MS/MS 2.45 0.891 2 3 5 1 8 3 66051000 0 31775000 34277000 7469 619 7774;7775 31752;31753;31754;31755;31756;31757;31758;31759;31760;31761;31762 26780;26781;26782;26783;26784 26782 270 5 0 13780000 6637900 LAQANGWGVMVSHR VNQIGSVTESLQACKLAQANGWGVMVSHRS KLAQANGWGVMVSHRSGETEDTFIADLVVG K L A H R S 2 1 1 0 0 1 0 2 1 0 1 0 1 0 0 1 0 1 0 2 0 0 14 0 1524.762 P06733 P06733 359 372 ENO1 Alpha-enolase yes yes 2;3 3.9172E-07 166.14 By MS/MS By MS/MS By MS/MS 6.22 2.3 2 4 1 2 3 1 5 59758000 21129000 4452800 34176000 7470 448 7776 31763;31764;31765;31766;31767;31768;31769;31770;31771 26785;26786;26787;26788;26789 26786 5 16665000 1147800 25751000 LAQAYYESTR NKKIDFTEFLLMVFKLAQAYYESTRKENLP LMVFKLAQAYYESTRKENLPISGHKHRKHS K L A T R K 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 10 0 1200.5775 CON__P20930;P20930 CON__P20930 81 90 FLG Filaggrin yes no 2 0.00033429 138.98 By MS/MS By matching 6.5 2.96 1 1 1 1 1 1 2 7 1 24308000 22995000 0 1313600 + 7471 62 7777 31772;31773;31774;31775;31776;31777;31778;31779 26790;26791;26792;26793;26794 26793 5 24724000 0 2872900 LAQDPYR QDSAMLGSKSPDPYRLAQDPYRLAQDPYRL SKSPDPYRLAQDPYRLAQDPYRLGHDPYRL R L A Y R L 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 0 861.43447 P18583 P18583 916 922 SON Protein SON yes no 2 0.011689 117.7 By MS/MS 1 0 1 1 4500000 0 4500000 0 7472 596 7778 31780 26795 26795 1 0 2199500 0 LAQEEESEAK PRVMAGTLKLEDKQRLAQEEESEAKRLAIM EDKQRLAQEEESEAKRLAIMMMKKREKYLY R L A A K R 2 0 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 10 0 1132.5248 O00541 O00541 524 533 PES1 Pescadillo homolog yes yes 2 0.00051552 128.38 By MS/MS By MS/MS 3 0 2 1 1 11278000 0 2945800 8332300 7473 127 7779 31781;31782 26796;26797 26797 1 0 1255800 1616100 LAQEEESEAKR PRVMAGTLKLEDKQRLAQEEESEAKRLAIM DKQRLAQEEESEAKRLAIMMMKKREKYLYQ R L A K R L 2 1 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1288.6259 O00541 O00541 524 534 PES1 Pescadillo homolog yes yes 2;3 0.0015292 100.25 By MS/MS By MS/MS 3 0 4 2 2 47315000 0 10882000 36433000 7474 127 7780 31783;31784;31785;31786 26798;26799;26800;26801;26802 26799 5 0 4639000 7066300 LAQEGIYTLYPFINSR WCRNNSGEEFDCAFRLAQEGIYTLYPFINS AQEGIYTLYPFINSRIITVSMEDVKILLTQ R L A S R I 1 1 1 0 0 1 1 1 0 2 2 0 0 1 1 1 1 0 2 0 0 0 16 0 1883.9781 Q08J23 Q08J23 603 618 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 0.037017 40.693 By MS/MS By matching 2.5 0.5 1 1 1 1 7551600 0 4095400 3456200 7475 1187 7781 31787;31788 26803 26803 1 0 1844200 670340 LAQEPLGLEVDQFLEDVR RRRRGPRNKKRGWRRLAQEPLGLEVDQFLE EPLGLEVDQFLEDVRLQERTSGGLLSEAPN R L A V R L 1 1 0 2 0 2 3 1 0 0 4 0 0 1 1 0 0 0 0 2 0 0 18 0 2070.0633 Q9NZM5 Q9NZM5 51 68 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes yes 2 2.5373E-08 141.54 By MS/MS 4 0 1 1 6254800 0 0 6254800 7476 2106 7782 31789 26804 26804 1 0 0 1021600 LAQFDYGR KYVLKPATEGKQRLKLAQFDYGRKCSEVAR EGKQRLKLAQFDYGRKCSEVARLTEGMSGR K L A G R K 1 1 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 8 0 968.47158 Q5T9A4;Q9NVI7 Q9NVI7 554 561 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.00038082 130.77 By MS/MS 3.5 0.5 1 1 2 16004000 0 16004000 0 7477 2066;1456 7783 31790;31791 26805 26805 1 0 6158400 0 LAQFEPSQR PPEDPSVPVALNIGKLAQFEPSQRQNQVGV ALNIGKLAQFEPSQRQNQVGVVPWSPPQSN K L A Q R Q 1 1 0 0 0 2 1 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 9 0 1074.5458 Q08211 Q08211 315 323 DHX9 ATP-dependent RNA helicase A yes yes 2 6.6122E-11 164.72 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 135090000 0 79741000 55347000 7478 1182 7784 31792;31793;31794;31795;31796 26806;26807;26808;26809;26810 26808 5 0 36515000 12211000 LAQFIGNR PELVKIINDNATYCRLAQFIGNRRELNEDK DNATYCRLAQFIGNRRELNEDKLEKLEELT R L A N R R 1 1 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 8 0 917.5083 O00567 O00567 213 220 NOP56 Nucleolar protein 56 yes yes 2 0.0001389 144.29 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 85091000 7693600 25317000 52080000 7479 130 7785 31797;31798;31799;31800 26811;26812;26813 26812 3 8876700 10792000 9778100 LAQFIGNRR PELVKIINDNATYCRLAQFIGNRRELNEDK NATYCRLAQFIGNRRELNEDKLEKLEELTM R L A R R E 1 2 1 0 0 1 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 9 1 1073.6094 O00567 O00567 213 221 NOP56 Nucleolar protein 56 yes yes 2 0.00091534 117.93 By MS/MS 3.5 0.5 1 1 2 4936300 0 4936300 0 7480 130 7786 31801;31802 26814 26814 1 0 1921500 0 LAQFVEHWK LSDDNTIGKEEIQQRLAQFVEHWKELKQLA EEIQQRLAQFVEHWKELKQLAAARGQRLEE R L A W K E 1 0 0 0 0 1 1 0 1 0 1 1 0 1 0 0 0 1 0 1 0 0 9 0 1156.6029 Q13813 Q13813 1845 1853 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0030141 101.54 By MS/MS By MS/MS 1 0 2 1 1 46524000 0 11179000 35345000 7481 1268 7787 31803;31804 26815;26816 26816 2 0 5464200 7615600 LAQGHTTVDELAR RLQEAGILSAEELQRLAQGHTTVDELARRE QRLAQGHTTVDELARREDVRHYLQGRSSIA R L A A R R 2 1 0 1 0 1 1 1 1 0 2 0 0 0 0 0 2 0 0 1 0 0 13 0 1409.7263 Q15149 Q15149 2809 2821 PLEC Plectin yes yes 2;3 1.5864E-24 197.73 By MS/MS By MS/MS 1 0 3 2 1 70315000 0 58497000 11817000 7482 1348 7788 31805;31806;31807 26817;26818;26819 26819 3 0 28593000 2546200 LAQHITYVHQHSR LWLIQDRPDRDNDLRLAQHITYVHQHSRQP LRLAQHITYVHQHSRQPPSQFEPLDMKLMR R L A S R Q 1 1 0 0 0 2 0 0 3 1 1 0 0 0 0 1 1 0 1 1 0 0 13 0 1588.8223 P33993 P33993 533 545 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.041699 47.201 By MS/MS 3 0 1 1 1141300 0 1141300 0 7483 733 7789 31808 26820 26820 1 0 486540 0 LAQICSSIR LDPEALGNIKKLSNRLAQICSSIRTHK___ KKLSNRLAQICSSIRTHK____________ R L A I R T 1 1 0 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 9 0 1046.5543 Q53HL2 Q53HL2 269 277 CDCA8 Borealin yes yes 2 0.0024939 103.83 By MS/MS 6 0 1 1 0 0 0 0 7484 1429 7790 31809 26821 26821 1 0 0 0 LAQLEAALQQAK AEEQGELAFQDAKTKLAQLEAALQQAKQDM KTKLAQLEAALQQAKQDMARQLRKYQELMN K L A A K Q 4 0 0 0 0 3 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1282.7245 Q6KB66;CON__Q6KB66-1 Q6KB66 345 356 KRT80 Keratin, type II cytoskeletal 80 yes no 2 2.7515E-06 162.34 By MS/MS By matching 5.33 3.73 1 2 1 1 1 5 1 26403000 24115000 2287500 0 + 7485 93 7791 31810;31811;31812;31813;31814;31815 26822;26823;26824;26825 26824 3 23264000 1030100 0 LAQQISDEASR PNPSSECMLRNVSVRLAQQISDEASRYMPD VSVRLAQQISDEASRYMPDICVIRAIQKII R L A S R Y 2 1 0 1 0 2 1 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 11 0 1216.6048 Q93008 Q93008 1221 1231 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 3.3229E-07 158.57 By MS/MS 1.5 0.5 1 1 2 8217500 0 0 8217500 7486 1737 7792 31816;31817 26826 26826 1 0 0 1787300 LAQQMENRPSVQAALK SMQQQQQLASARNRRLAQQMENRPSVQAAL AQQMENRPSVQAALKLKQSLKQRLGKSNIQ R L A L K L 3 1 1 0 0 3 1 0 0 0 2 1 1 0 1 1 0 0 0 1 0 0 16 1 1782.9411 Q9Y3Y2 Q9Y3Y2 55 70 CHTOP Chromatin target of PRMT1 protein yes yes 2;3 3.1843E-73 240.42 By MS/MS By MS/MS 6.1 1.22 1 1 6 1 1 5 5 553580000 0 118070000 435510000 7487 2280 7793;7794 31818;31819;31820;31821;31822;31823;31824;31825;31826;31827 26827;26828;26829;26830;26831;26832;26833;26834;26835;26836;26837 26832 738 11 0 42990000 65133000 LAQQQAAAAAAAAAAASQQGSAK MPDVVQTRQQAYRDKLAQQQAAAAAAAAAA AAAAAAAASQQGSAKNGENTANGEENGAHT K L A A K N 13 0 0 0 0 5 0 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 23 0 2054.0505 Q9BZK7 Q9BZK7 103 125 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes yes 3 1.0317E-15 120.42 By MS/MS 4 0 1 1 10332000 0 0 10332000 7488 1945 7795 31828 26838 26838 1 0 0 1687500 LAQQQAALLMQQEER RVGEPVALSEEERLKLAQQQAALLMQQEER LAQQQAALLMQQEERAKQQGDHSLKEHELL K L A E R A 3 1 0 0 0 5 2 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 15 0 1755.8938 Q13435 Q13435 149 163 SF3B2 Splicing factor 3B subunit 2 yes yes 2;3 7.7195E-149 284.1 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 79214000 0 13103000 66110000 7489 1248 7796 31829;31830;31831;31832;31833 26839;26840;26841;26842 26841 4 0 5900600 14819000 LASAGVDTNVR YSLDFQHGTAGRIHRLASAGVDTNVRIWKV RIHRLASAGVDTNVRIWKVEKGPDGKAIVE R L A V R I 2 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 2 0 0 11 0 1101.5778 Q13112 Q13112 32 42 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 1.4486E-26 200.05 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 46541000 0 12243000 34299000 7490 1221 7797 31834;31835;31836;31837 26843;26844;26845 26845 3 0 4526300 6481900 LASAQEVAGSTSAK RSSARLKARSCSAARLASAQEVAGSTSAKT RLASAQEVAGSTSAKTACLTSSSHKATDTR R L A A K T 4 0 0 0 0 1 1 1 0 0 1 1 0 0 0 3 1 0 0 1 0 0 14 0 1318.6729 Q8IYL3 Q8IYL3 26 39 C1orf174 UPF0688 protein C1orf174 yes yes 2 3.9172E-07 166.14 By MS/MS 6 0 1 1 6101400 0 0 6101400 7491 1594 7798 31838 26846 26846 1 0 0 912830 LASASLLDTDKR EDGEGDFLVVGSIRKLASASLLDTDKRYCG IRKLASASLLDTDKRYCGKTTSRKAWNEDH K L A K R Y 2 1 0 2 0 0 0 0 0 0 3 1 0 0 0 2 1 0 0 0 0 0 12 1 1288.6987 Q9NY61 Q9NY61 59 70 AATF Protein AATF yes yes 2 0.0065576 105.98 By MS/MS 3 0 1 1 5052800 0 0 5052800 7492 2094 7799 31839 26847 26847 1 0 0 980000 LASDLLEWIR AVNQENEHLMEDYEKLASDLLEWIRRTIPW EDYEKLASDLLEWIRRTIPWLEDRVPQKTI K L A I R R 1 1 0 1 0 0 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 10 0 1214.6659 O43707;P12814 O43707 301 310 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2 8.057E-07 154.49 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 181040000 0 96789000 84253000 7493 210;540 7800 31840;31841;31842;31843;31844;31845;31846 26848;26849;26850;26851;26852;26853;26854;26855 26854 8 0 43456000 18760000 LASDLLEWIRR AVNQENEHLMEDYEKLASDLLEWIRRTIPW DYEKLASDLLEWIRRTIPWLEDRVPQKTIQ K L A R R T 1 2 0 1 0 0 1 0 0 1 3 0 0 0 0 1 0 1 0 0 0 0 11 1 1370.767 O43707;P12814 O43707 301 311 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 3 4.4927E-05 134.75 By MS/MS 2 0 1 1 4348300 0 4348300 0 7494 210;540 7801 31847 26856 26856 1 0 1958100 0 LASEYLTPEEMVTFK KLRLQAQSLSTVGPRLASEYLTPEEMVTFK LASEYLTPEEMVTFKKTKRRVKKIRKKEKE R L A F K K 1 0 0 0 0 0 3 0 0 0 2 1 1 1 1 1 2 0 1 1 0 0 15 0 1756.8593 O43290 O43290 386 400 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.00039821 137.01 By MS/MS 2 0 1 1 7792300 0 0 7792300 7495 193 7802 31848 26857 26857 1 0 0 1760900 LASFFLSR CMTYFPRACGSLKGKLASFFLSRVDALSPQ CGSLKGKLASFFLSRVDALSPQLQQLACEC K L A S R V 1 1 0 0 0 0 0 0 0 0 2 0 0 2 0 2 0 0 0 0 0 0 8 0 939.5178 Q8IZL8 Q8IZL8 217 224 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 0.00045632 129.68 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 36979000 0 11868000 25111000 7496 1596 7803 31849;31850;31851;31852;31853;31854 26858;26859;26860;26861;26862;26863 26861 6 0 5299000 5441400 LASLEELKR NLQKYQAECSQFKAKLASLEELKRQAELDG SQFKAKLASLEELKRQAELDGKSAKQNLDK K L A K R Q 1 1 0 0 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 9 1 1057.6132 P15924 P15924 1076 1084 DSP Desmoplakin yes yes 2 1.8303E-31 198.87 By MS/MS By MS/MS By MS/MS 4.08 2.75 3 2 1 1 1 1 1 1 1 9 1 2 115490000 53373000 19904000 42212000 7497 572 7804 31855;31856;31857;31858;31859;31860;31861;31862;31863;31864;31865;31866 26864;26865;26866;26867;26868 26868 4 48984000 9728600 9114400 LASLFSSLEPQIQPVYVPVPK SLFRGEHHSRGGTGRLASLFSSLEPQIQPV SLEPQIQPVYVPVPKQTIKKTKRNEEEEST R L A P K Q 1 0 0 0 0 2 1 0 0 1 3 1 0 1 4 3 0 0 1 3 0 0 21 0 2311.2828 P42696 P42696 56 76 RBM34 RNA-binding protein 34 yes yes 2;3 8.3615E-06 92.925 By matching By MS/MS 3.5 0.5 2 2 2 2 12841000 0 1358600 11482000 7498 807 7805 31867;31868;31869;31870 26869;26870 26870 2 0 579180 1875500 LASLMNLGMSSSLNQQGAHSALSSASTSSHNLQSIFNIGSR SMPASLGRMNQGTARLASLMNLGMSSSLNQ TSSHNLQSIFNIGSRGPLPLSSQHRGDADQ R L A S R G 4 1 4 0 0 3 0 3 2 2 6 0 2 1 0 12 1 0 0 0 0 0 41 0 4203.0437 P43243 P43243 52 92 MATR3 Matrin-3 yes yes 4;5 2.8002E-133 211.37 By MS/MS By MS/MS 2 0.535 1 5 1 1 6 187940000 0 11257000 176690000 7499 812 7806;7807 31871;31872;31873;31874;31875;31876;31877 26871;26872;26873;26874;26875;26876;26877 26875 397;398 7 0 5069400 39362000 LASMATLLAR KNQGKIFAFDLDAKRLASMATLLARAGVSC LDAKRLASMATLLARAGVSCCELAEEDFLA R L A A R A 3 1 0 0 0 0 0 0 0 0 3 0 1 0 0 1 1 0 0 0 0 0 10 0 1045.5954 Q96P11 Q96P11 264 273 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 0.0014444 109.11 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 7279400 0 1291500 5987900 7500 1815 7808 31878;31879;31880 26878;26879 26879 2 0 428610 931310 LASNALQEPSSFR AVTPVTILVFCGPARLASNALQEPSSFRVD ARLASNALQEPSSFRVDGIPNDSSDSEMED R L A F R V 2 1 1 0 0 1 1 0 0 0 2 0 0 1 1 3 0 0 0 0 0 0 13 0 1418.7154 Q9H6S0 Q9H6S0 1069 1081 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 2 8.2898E-12 183.03 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 16930000 0 4974600 11955000 7501 1989 7809 31881;31882;31883 26880;26881;26882 26882 3 0 2240100 2638200 LASQADSTEQVDDTILT SLEVLNEVNRRSLKKLASQADSTEQVDDTI SQADSTEQVDDTILT_______________ K L A L T - 2 0 0 3 0 2 1 0 0 1 2 0 0 0 0 2 3 0 0 1 0 0 17 0 1805.8531 Q92616 Q92616 2655 2671 GCN1L1 Translational activator GCN1 yes yes 2 0.0001245 99.5 By MS/MS By matching 1.5 0.5 1 1 1 1 4781900 0 2058000 2724000 7502 1712 7810 31884;31885 26883 26883 1 0 1005900 615570 LASQANIAQVLAELK DPIYVKLEKLDIMIRLASQANIAQVLAELK LASQANIAQVLAELKEYATEVDVDFVRKAV R L A L K E 4 0 1 0 0 2 1 0 0 1 3 1 0 0 0 1 0 0 0 1 0 0 15 0 1567.8934 P63010;Q10567 P63010 345 359 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 2 1.8605E-11 177.16 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 50245000 0 3419700 46826000 7503 1057;1193 7811 31886;31887;31888;31889 26884;26885;26886 26884 3 0 1539900 10150000 LASTLVHLGEYQAAVDGAR DAAKLLYNNVSNFGRLASTLVHLGEYQAAV LVHLGEYQAAVDGARKANSTRTWKEVCFAC R L A A R K 4 1 0 1 0 1 1 2 1 0 3 0 0 0 0 1 1 0 1 2 0 0 19 0 1970.0221 Q00610 Q00610 1227 1245 CLTC Clathrin heavy chain 1 yes yes 2;3 8.3331E-135 272.74 By matching By MS/MS By MS/MS 2 1 4 3 2 1 1 2 7 251370000 2663800 58009000 190700000 7504 1125 7812 31890;31891;31892;31893;31894;31895;31896;31897;31898;31899 26887;26888;26889;26890;26891;26892 26889 6 2663800 27204000 40621000 LASTNSSVLGADLPSSMK EEEEAEAETAKATPRLASTNSSVLGADLPS TNSSVLGADLPSSMKEKAKAETEKAGKTGN R L A M K E 2 0 1 1 0 0 0 1 0 0 3 1 1 0 1 5 1 0 0 1 0 0 18 0 1776.8928 Q13428 Q13428 105 122 TCOF1 Treacle protein yes yes 2 1.738E-08 123.02 By matching By MS/MS 1.8 0.748 2 2 1 2 3 42297000 3339400 0 38958000 7505 1247 7813 31900;31901;31902;31903;31904 26893;26894 26894 2 3722700 0 8417000 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA AAPAAGSAPAAAEEKKDEKKEESEESDDDM K L A E K K 14 0 0 0 0 0 2 4 0 0 1 1 0 0 4 4 0 0 0 3 0 0 33 0 2773.4246 P05387 P05387 62 94 RPLP2 60S acidic ribosomal protein P2 yes yes 2;3;4 1.6034E-61 184.35 By MS/MS By MS/MS By MS/MS 8.47 0.915 3 5 7 2 1 8 8 1613000000 12496000 583320000 1017200000 7506 431 7814 31905;31906;31907;31908;31909;31910;31911;31912;31913;31914;31915;31916;31917;31918;31919;31920;31921 26895;26896;26897;26898;26899;26900;26901;26902;26903;26904;26905;26906;26907;26908;26909 26904 15 7014300 497130000 317550000 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA APAAGSAPAAAEEKKDEKKEESEESDDDMG K L A K K D 14 0 0 0 0 0 2 4 0 0 1 2 0 0 4 4 0 0 0 3 0 0 34 1 2901.5196 P05387 P05387 62 95 RPLP2 60S acidic ribosomal protein P2 yes yes 3;4 1.7455E-21 86.936 By MS/MS By MS/MS 8.6 0.49 2 3 3 2 98244000 0 35982000 62262000 7507 431 7815 31922;31923;31924;31925;31926 26910;26911;26912;26913;26914 26911 5 0 26875000 16781000 LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEK NGKNIEDVIAQGIGKLASVPAGGAVAVSAA AGSAPAAAEEKKDEKKEESEESDDDMGFGL K L A E K K 14 0 0 1 0 0 3 4 0 0 1 3 0 0 4 4 0 0 0 3 0 0 37 2 3273.6841 P05387 P05387 62 98 RPLP2 60S acidic ribosomal protein P2 yes yes 4 1.5769E-26 81.802 By MS/MS 8.5 0.5 1 1 2 52238000 0 0 52238000 7508 431 7816 31927;31928 26915;26916 26916 2 0 0 13926000 LASYLDK LTANEKSTMQELNSRLASYLDKVQALEEAN TMQELNSRLASYLDKVQALEEANNDLENKI R L A D K V 1 0 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 808.43307 P13645;CON__P13645;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;P35527;CON__P35527;Q04695;CON__Q04695;CON__P08730-1;CON__P08727;P08727;CON__Q99456;Q99456;CON__P05784 P35527 164 170 KRT10;KRT14;KRT16;KRT9;KRT17;KRT19;KRT12 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 9;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12 no no 2 0.0024562 134.66 By MS/MS By MS/MS By MS/MS 5.61 3.15 3 1 1 2 2 2 1 1 2 3 7 4 7 10248000000 8670900000 126000000 1450800000 + 7509 750;56;35;73;53;51;48;52 7817 31929;31930;31931;31932;31933;31934;31935;31936;31937;31938;31939;31940;31941;31942;31943;31944;31945;31946 26917;26918;26919;26920;26921;26922;26923;26924;26925;26926;26927;26928;26929;26930;26931;26932;26933;26934 26923 18 9602200000 137340000 641480000 LASYLDKVQALEEANNDLENK LTANEKSTMQELNSRLASYLDKVQALEEAN KVQALEEANNDLENKIQDWYDKKGPAAIQK R L A N K I 3 0 3 2 0 1 3 0 0 0 4 2 0 0 0 1 0 0 1 1 0 0 21 1 2376.1809 P35527;CON__P35527 P35527 164 184 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 0 399.32 By MS/MS By matching By MS/MS 5.14 2.72 3 1 3 3 2 3 1 3 2 1 10 2 10 800910000 673270000 3350500 124290000 + 7510 750 7818 31947;31948;31949;31950;31951;31952;31953;31954;31955;31956;31957;31958;31959;31960;31961;31962;31963;31964;31965;31966;31967;31968 26935;26936;26937;26938;26939;26940;26941;26942;26943;26944;26945;26946;26947;26948;26949;26950;26951 26937 17 538510000 1332400 25962000 LASYLDKVR LSGNEKVTMQNLNDRLASYLDKVRALEESN QNLNDRLASYLDKVRALEESNYELEGKIKE R L A V R A 1 1 0 1 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 9 1 1063.6026 P13645;CON__P13645;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;Q04695;CON__Q04695;CON__P08730-1;CON__P08727;P08727;CON__Q99456;Q99456 P13645 157 165 KRT10;KRT14;KRT16;KRT17;KRT19;KRT12 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12 no no 2 1.1054E-15 178.65 By MS/MS By MS/MS By MS/MS 5.28 3.16 3 2 1 2 2 1 2 1 1 3 9 7 2 1387200000 1146100000 172900000 68246000 + 7511 56;35;73;53;51;52 7819 31969;31970;31971;31972;31973;31974;31975;31976;31977;31978;31979;31980;31981;31982;31983;31984;31985;31986 26952;26953;26954;26955;26956;26957;26958;26959;26960;26961;26962;26963;26964;26965;26966;26967 26959 16 1200900000 148470000 23235000 LASYLDR GIQNEKETMQSLNDRLASYLDRVRSLETEN TMQSLNDRLASYLDRVRSLETENRRLESKI R L A D R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 7 0 836.43922 P05783 P05783 91 97 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 0.00082515 151.17 By MS/MS By MS/MS 4.5 1.5 1 1 2 2 1 1 6 2 655460000 0 265320000 390140000 7512 436 7820 31987;31988;31989;31990;31991;31992;31993;31994 26968;26969;26970;26971;26972;26973;26974 26974 7 0 73502000 56325000 LASYLEK LTGNEKITMQNLNDRLASYLEKVRALEEAN TMQNLNDRLASYLEKVRALEEANADLEVKI R L A E K V 1 0 0 0 0 0 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 7 0 822.44872 CON__P13646-1;CON__O76011;CON__Q6NTB9;CON__O76009;CON__Q6IFU5;CON__Q8IUT8;O76009;Q6A162;O76011;P13646;CON__ENSEMBL:ENSP00000377550;CON__Q14525;CON__Q9UE12;CON__Q15323;Q14525;Q15323 P13646 115 121 KRT33A;KRT40;KRT34;KRT13;KRT33B;KRT31 Keratin, type I cuticular Ha3-I;Keratin, type I cytoskeletal 40;Keratin, type I cuticular Ha4;Keratin, type I cytoskeletal 13;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha1 no no 2 0.026609 95.541 By MS/MS 1 0 1 1 75903000 75903000 0 0 + 7513 57;548 7821 31995 26975 26975 1 75903000 0 0 LATEYMSSAR DLDQRTEDLKAEIDKLATEYMSSARSLSSE AEIDKLATEYMSSARSLSSEEKLALLKQIQ K L A A R S 2 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 1 0 1 0 0 0 10 0 1127.5281 Q9UNL4 Q9UNL4 45 54 ING4 Inhibitor of growth protein 4 yes yes 2 0.02392 80.787 By MS/MS 6 0 1 1 5563400 0 0 5563400 7514 2207 7822 31996 26976 26976 1 0 0 832340 LATLLGLQAPPTR RLLDMDGIIVEKQRRLATLLGLQAPPTRIG RRLATLLGLQAPPTRIGLINDMVRFNVLQY R L A T R I 2 1 0 0 0 1 0 1 0 0 4 0 0 0 2 0 2 0 0 0 0 0 13 0 1349.8031 Q14152 Q14152 355 367 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0035233 104.52 By MS/MS 1.5 0.5 1 1 2 3457100 0 3457100 0 7515 1286 7823 31997;31998 26977 26977 1 0 1615200 0 LATNAAVTVLR AGILDTYLGKYWAIKLATNAAVTVLRVDQI WAIKLATNAAVTVLRVDQIIMAKPAGGPKP K L A L R V 3 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1127.6663 P50990 P50990 510 520 CCT8 T-complex protein 1 subunit theta yes yes 2 0.0013387 110.88 By matching By matching By MS/MS 7 3 2 2 1 1 2 24866000 4056700 538260 20271000 7516 885 7824 31999;32000;32001;32002 26978;26979 26978 2 3164900 2723200 10471000 LATNTSAPDLK PTSAKPSSTTPRLSRLATNTSAPDLKNVRS RLSRLATNTSAPDLKNVRSKVGSTENIKHQ R L A L K N 2 0 1 1 0 0 0 0 0 0 2 1 0 0 1 1 2 0 0 0 0 0 11 0 1129.5979 P27816 P27816 923 933 MAP4 Microtubule-associated protein 4 yes yes 2 1.4824E-05 109.88 By MS/MS By MS/MS 4.38 2.96 1 2 1 1 1 1 1 1 7 73970000 0 16009000 57961000 7517 683 7825 32003;32004;32005;32006;32007;32008;32009;32010 26980;26981;26982;26983 26981 4 0 7209200 18337000 LATPTYGDLNHLVSATMSGVTTSLR IDNEALYDICFRTLKLATPTYGDLNHLVSA HLVSATMSGVTTSLRFPGQLNADLRKLAVN K L A L R F 2 1 1 1 0 0 0 2 1 0 4 0 1 0 1 3 5 0 1 2 0 0 25 0 2604.3218 Q13509 Q13509 217 241 TUBB3 Tubulin beta-3 chain yes yes 3 2.1148E-12 95.357 By MS/MS 4.5 0.5 1 1 2 17925000 0 17925000 0 7518 1254 7826 32011;32012 26984;26985 26984 2 0 5862400 0 LATQLTGPVMPVR PSAPKKGDSSAEELKLATQLTGPVMPVRNV LKLATQLTGPVMPVRNVYKKEKARVITEEE K L A V R N 1 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 2 0 0 2 0 0 13 0 1381.7752 P26373 P26373 146 158 RPL13 60S ribosomal protein L13 yes yes 2;3 5.5169E-89 258.25 By MS/MS By MS/MS By MS/MS 6 2.4 2 1 1 2 2 5 6 3 1 2 2 9 14 1313300000 20145000 496920000 796250000 7519 669 7827;7828 32013;32014;32015;32016;32017;32018;32019;32020;32021;32022;32023;32024;32025;32026;32027;32028;32029;32030;32031;32032;32033;32034;32035;32036;32037 26986;26987;26988;26989;26990;26991;26992;26993;26994;26995;26996;26997;26998;26999;27000;27001;27002;27003;27004;27005;27006 26998 299 21 43418000 231390000 140030000 LATQSNEITIPVTFESR LSPEGTLTVEAPMPKLATQSNEITIPVTFE TQSNEITIPVTFESRAQLGGPEAAKSDETA K L A S R A 1 1 1 0 0 1 2 0 0 2 1 0 0 1 1 2 3 0 0 1 0 0 17 0 1904.9844 P04792 P04792 172 188 HSPB1 Heat shock protein beta-1 yes yes 2;3 3.0428E-110 260.81 By MS/MS By MS/MS By MS/MS 6.83 0.373 1 5 1 2 3 360950000 2443600 66603000 291900000 7520 417 7829 32038;32039;32040;32041;32042;32043 27007;27008;27009;27010;27011;27012;27013 27012 7 5266400 38244000 50888000 LATTILQHWK QSFRERANQKHQGLKLATTILQHWKKCDSW HQGLKLATTILQHWKKCDSWWAKDSPLETK K L A W K K 1 0 0 0 0 1 0 0 1 1 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1209.687 P78527 P78527 1618 1627 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0041356 99.802 By MS/MS 1 0 1 1 20135000 0 0 20135000 7521 1089 7830 32044 27014 27014 1 0 0 4338400 LATVVNDER EYLKSSDRLDEAAQRLATVVNDERFVSKAG DEAAQRLATVVNDERFVSKAGKSNYQLWHE R L A E R F 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1015.5298 Q9HCS7 Q9HCS7 200 208 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 5.7317E-05 147.19 By MS/MS By MS/MS 3.25 1.64 2 1 1 1 3 22382000 0 5929300 16453000 7522 2014 7831 32045;32046;32047;32048 27015;27016 27015 2 0 2670000 3104400 LATYGITVAELTGDHQLCK MRSLVQEMVGSFGKRLATYGITVAELTGDH GITVAELTGDHQLCKEEISATQIIVCTPEK R L A C K E 2 0 0 1 1 1 1 2 1 1 3 1 0 0 0 0 3 0 1 1 0 0 19 0 2089.0514 O75643 O75643 559 577 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.00058706 69.148 By MS/MS 1 0 1 1 9642000 0 0 9642000 7523 277 7832 32049 27017 27017 1 0 0 2077500 LAVDEEENADNNTK LARQVDGDNSHVEMKLAVDEEENADNNTKA KLAVDEEENADNNTKANVTKPKRCSGSICY K L A T K A 2 0 3 2 0 0 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 14 0 1560.6904 P02786 P02786 40 53 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 2 2.9187E-07 168.3 By MS/MS 9 0 1 1 3978300 0 0 3978300 7524 398 7833 32050 27018 27018 1 0 0 1270800 LAVEAVLR LSSKLLTHHKDHFTKLAVEAVLRLKGSGNL HKDHFTKLAVEAVLRLKGSGNLEAIHIIKK K L A L R L 2 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 8 0 869.53345 P78371 P78371 182 189 CCT2 T-complex protein 1 subunit beta yes yes 2 0.0010414 121.29 By matching By MS/MS 4 0 2 1 1 10925000 2321000 0 8604500 7525 1086 7834 32051;32052 27019 27019 1 1810800 0 1405400 LAVEILNK GEGRSKKEAKNAAAKLAVEILNKEKKAVSP AKNAAAKLAVEILNKEKKAVSPLLLTTTNS K L A N K E 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 8 0 898.54877 P19525 P19525 70 77 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.020722 83.753 By matching By MS/MS By MS/MS 3.6 0.8 3 1 1 1 3 1 35296000 1536600 16250000 17510000 7526 609 7835 32053;32054;32055;32056;32057 27020;27021;27022 27021 3 1772800 6037100 3396100 LAVLPYELR REVVTEIRDKATRRRLAVLPYELRFKEPLP KATRRRLAVLPYELRFKEPLPEYVRLVTEF R L A L R F 1 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 1 1 0 0 9 0 1072.6281 Q9ULX3 Q9ULX3 46 54 NOB1 RNA-binding protein NOB1 yes yes 2 0.00046016 119.27 By MS/MS By MS/MS 6.29 1.48 1 2 2 2 4 3 18359000 0 9618900 8740100 7527 2194 7836 32058;32059;32060;32061;32062;32063;32064 27023;27024;27025;27026;27027 27024 5 0 4441400 1373500 LAVLSSSLTHWK EQHEYMDRARQYSTRLAVLSSSLTHWKKLP STRLAVLSSSLTHWKKLPPLPSLTSQPHQV R L A W K K 1 0 0 0 0 0 0 0 1 0 3 1 0 0 0 3 1 1 0 1 0 0 12 0 1340.7452 Q6IAA8 Q6IAA8 92 103 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 2;3 0.007086 98.943 By MS/MS By MS/MS 8 0 4 2 2 19252000 0 9565100 9687400 7528 1475 7837 32065;32066;32067;32068 27028;27029;27030 27029 3 0 4351800 1485200 LAVNMVPFPR TCLRFPGQLNADLRKLAVNMVPFPRLHFFM ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG K L A P R L 1 1 1 0 0 0 0 0 0 0 1 0 1 1 2 0 0 0 0 2 0 0 10 0 1142.627 P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;Q9H4B7;P68371;Q13885;Q9BVA1;P04350;Q13509;Q3ZCM7;Q9BUF5 P68371 253 262 TUBB;TUBB1;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-1 chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 2 1.0814E-61 228.59 By MS/MS By MS/MS By MS/MS 5.46 2.59 2 3 4 5 4 5 4 2 3 3 1 17 17 5654200000 43673000 2910500000 2700100000 7529 1079;462;1274;414;1254;1905;1415 7838;7839 32069;32070;32071;32072;32073;32074;32075;32076;32077;32078;32079;32080;32081;32082;32083;32084;32085;32086;32087;32088;32089;32090;32091;32092;32093;32094;32095;32096;32097;32098;32099;32100;32101;32102;32103 27031;27032;27033;27034;27035;27036;27037;27038;27039;27040;27041;27042;27043;27044;27045;27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056;27057;27058;27059;27060;27061;27062;27063;27064;27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082 27053 144 52 34072000 880740000 466870000 LAVNNIAGIEEVNMIKDDGTVIHFNNPK TATADDKKLQSSLKKLAVNNIAGIEEVNMI MIKDDGTVIHFNNPKVQASLSANTFAITGH K L A P K V 2 0 5 2 0 0 2 2 1 4 1 2 1 1 1 0 1 0 0 3 0 0 28 1 3064.5652 Q96K17 Q96K17 46 73 BTF3L4 Transcription factor BTF3 homolog 4 yes yes 4 4.7165E-07 65.428 By MS/MS 7.5 0.5 1 1 2 15888000 0 0 15888000 7530 1803 7840 32104;32105 27083 27083 1 0 0 2559000 LAVPIILR SMARFTYEYSRRHTKLAVPIILRVAKGYQE YSRRHTKLAVPIILRVAKGYQELLEKCSQS K L A L R V 1 1 0 0 0 0 0 0 0 2 2 0 0 0 1 0 0 0 0 1 0 0 8 0 893.60622 CON__Q3SZ57 CON__Q3SZ57 366 373 yes yes 2 0.00098128 122.15 By MS/MS By MS/MS By MS/MS 2.67 0.943 1 1 3 1 3 2 1 28520000 16254000 8597400 3668000 + 7531 83 7841 32106;32107;32108;32109;32110;32111 27084;27085;27086;27087 27084 4 18685000 3290700 711420 LAVVDEWR SLKLDCKMEVSVSDKLAVVDEWRKEMGLCW EVSVSDKLAVVDEWRKEMGLCWKEVAYLGN K L A W R K 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 2 0 0 8 0 986.51853 Q8NFW8 Q8NFW8 351 358 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 3.7276E-10 129.4 By MS/MS 5 0 1 1 0 0 0 0 7532 1644 7842 32112 27088 27088 1 0 0 0 LAVVDEWRK SLKLDCKMEVSVSDKLAVVDEWRKEMGLCW VSVSDKLAVVDEWRKEMGLCWKEVAYLGNE K L A R K E 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 0 2 0 0 9 1 1114.6135 Q8NFW8 Q8NFW8 351 359 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.041396 79.809 By MS/MS 5 0 1 1 7787900 0 0 7787900 7533 1644 7843 32113 27089 27089 1 0 0 1086300 LAVVDPLFGMQPIR ENVNGYTNCCFGFHRLAVVDPLFGMQPIRV RLAVVDPLFGMQPIRVKKYPYLWLCYNGEI R L A I R V 1 1 0 1 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 2 0 0 14 0 1554.8592 P08243 P08243 50 63 ASNS Asparagine synthetase [glutamine-hydrolyzing] yes yes 2 0.00050903 145.34 By MS/MS 4 0 1 1 4247400 0 4247400 0 7534 471 7844 32114 27090 27090 1 0 1409600 0 LAVYIDK SRLQEKEELRELNDRLAVYIDKVRSLETEN ELRELNDRLAVYIDKVRSLETENSALQLQV R L A D K V 1 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 7 0 820.46945 P20700 P20700 43 49 LMNB1 Lamin-B1 yes yes 2 0.012539 116.11 By MS/MS By MS/MS 3 0 2 1 1 540360000 0 117620000 422740000 7535 619 7845 32115;32116 27091;27092 27091 2 0 50143000 81992000 LAVYIDR TRLQEKEDLQELNDRLAVYIDRVRSLETEN DLQELNDRLAVYIDRVRSLETENAGLRLRI R L A D R V 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 1 0 0 7 0 848.4756 P02545 P02545 42 48 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.00011345 159.19 By MS/MS By MS/MS 2.88 1.36 2 1 2 2 1 4 4 481440000 0 89622000 391820000 7536 387 7846 32117;32118;32119;32120;32121;32122;32123;32124 27093;27094;27095;27096;27097;27098;27099;27100 27098 8 0 35716000 73513000 LAVYQAGASEGAER LPKRLLRDADDLKKRLAVYQAGASEGAERS RLAVYQAGASEGAERSLSAIRERFGPLVEQ R L A E R S 4 1 0 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 14 0 1420.6947 CON__Q03247 CON__Q03247 176 189 yes yes 2;3 6.7945E-58 231.42 By MS/MS By MS/MS By MS/MS 6.62 2.3 3 2 2 2 4 3 2 3 5 6 10 1385200000 89422000 65641000 1230100000 + 7537 72 7847 32125;32126;32127;32128;32129;32130;32131;32132;32133;32134;32135;32136;32137;32138;32139;32140;32141;32142;32143;32144;32145 27101;27102;27103;27104;27105;27106;27107;27108;27109;27110;27111;27112;27113;27114;27115;27116 27111 16 128550000 74002000 247540000 LAWALALR DSQLWKLPGLQATVRLAWALALRGISQLPD GLQATVRLAWALALRGISQLPDVTALAEFT R L A L R G 3 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 912.55452 Q92621 Q92621 331 338 NUP205 Nuclear pore complex protein Nup205 yes yes 2 8.1106E-09 166.13 By MS/MS 1.5 0.5 1 1 2 8565800 0 0 8565800 7538 1714 7848 32146;32147 27117 27117 1 0 0 1858400 LAWEQQEPGER SYNPPPEYLLSEEERLAWEQQEPGERKLSF EEERLAWEQQEPGERKLSFLPRKFPSLRAV R L A E R K 1 1 0 0 0 2 3 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 0 1341.6313 Q14137 Q14137 328 338 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.00032849 131.5 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 19601000 0 3756500 15845000 7539 1283 7849 32148;32149 27118;27119 27119 2 0 1691600 3073100 LAYIAHPK VKPKIPKGVSRKLDRLAYIAHPKLGKRARA VSRKLDRLAYIAHPKLGKRARARIAKGLRL R L A P K L 2 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 0 8 0 911.52289 P47914 P47914 96 103 RPL29 60S ribosomal protein L29 yes yes 2 0.049679 73.039 By MS/MS By matching 5.8 1.17 1 1 1 2 4 1 92824000 0 59517000 33307000 7540 839 7850 32150;32151;32152;32153;32154 27120 27120 1 0 32736000 5910100 LAYINPDLALEEK KKCQQAEKILKEQERLAYINPDLALEEKNK ERLAYINPDLALEEKNKGNECFQKGDYPQA R L A E K N 2 0 1 1 0 0 2 0 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1487.7872 P31948 P31948 352 364 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0054152 99.283 By MS/MS 3 0 1 1 11627000 0 0 11627000 7541 726 7851 32155 27121 27121 1 0 0 2255200 LAYLLQQTDEYVANLTELVR EEGYRKLIDQKKDKRLAYLLQQTDEYVANL QQTDEYVANLTELVRQHKAAQVAKEKKKKK R L A V R Q 2 1 1 1 0 2 2 0 0 0 5 0 0 0 0 0 2 0 2 2 0 0 20 0 2351.2373 P51532 P51532 550 569 SMARCA4 Transcription activator BRG1 yes yes 3 5.0096E-14 145.91 By MS/MS 1.5 0.5 1 1 2 4364800 0 0 4364800 7542 894 7852 32156;32157 27122;27123 27123 2 0 0 951780 LAYLQILSEETSVK GTGSTKQEAKQLAAKLAYLQILSEETSVKS KLAYLQILSEETSVKSDYLSSGSFATTCES K L A V K S 1 0 0 0 0 1 2 0 0 1 3 1 0 0 0 2 1 0 1 1 0 0 14 0 1592.8661 P19525 P19525 160 173 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00016271 152.69 By matching By MS/MS 3.17 2.11 2 1 1 2 2 4 43679000 1440200 0 42238000 7543 609 7853 32158;32159;32160;32161;32162;32163 27124;27125 27124 2 1665700 0 8177700 LAYVAAGDLAPINAFIGGLAAQEVMK PAVQQNNLDEDLIRKLAYVAAGDLAPINAF INAFIGGLAAQEVMKACSGKFMPIMQWLYF K L A M K A 7 0 1 1 0 1 1 3 0 2 3 1 1 1 1 0 0 0 1 2 0 0 26 0 2602.3829 P22314 P22314 386 411 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 3 2.1565E-08 81.553 By MS/MS 2 0 1 1 4126400 0 0 4126400 7544 630 7854 32164 27126 27126 1 0 0 932480 LCFSTAQHAS YQMKNPNGPYPYTLKLCFSTAQHAS_____ PYTLKLCFSTAQHAS_______________ K L C A S - 2 0 0 0 1 1 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1120.4971 P14866 P14866 580 589 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 0.0014444 109.11 By MS/MS By MS/MS By MS/MS 4.17 1.34 2 3 1 3 1 2 287450000 222690000 18943000 45820000 7545 565 7855 32165;32166;32167;32168;32169;32170 27127;27128;27129;27130 27127 4 188630000 6286600 8676300 LCMGSGLNLCEPNNK EGCAPGSKKDSSLCKLCMGSGLNLCEPNNK LCMGSGLNLCEPNNKEGYYGYTGAFRCLVE K L C N K E 0 0 3 0 2 0 1 2 0 0 3 1 1 0 1 1 0 0 0 0 0 0 15 0 1705.7586 P02787 P02787 516 530 TF Serotransferrin yes yes 2 2.3329E-12 184.27 By MS/MS 9 0 1 1 11728000 11728000 0 0 7546 399 7856 32171 27131 27131 1 6582900 0 0 LCSLFYTNEEVAK VGIDYVIPKTGFYCKLCSLFYTNEEVAKNT CKLCSLFYTNEEVAKNTHCSSLPHYQKLKK K L C A K N 1 0 1 0 1 0 2 0 0 0 2 1 0 1 0 1 1 0 1 1 0 0 13 0 1572.7494 P43243 P43243 805 817 MATR3 Matrin-3 yes yes 2 0.00088482 116.13 By MS/MS 2 0 1 1 11531000 0 0 11531000 7547 812 7857 32172 27132 27132 1 0 0 2605800 LCTVATLR AENCDKSLHTLFGDKLCTVATLRETYGEMA HTLFGDKLCTVATLRETYGEMADCCAKQEP K L C L R E 1 1 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 1 0 0 8 0 932.51134 CON__P02768-1;P02768 CON__P02768-1 98 105 ALB Serum albumin yes no 2 0.00078235 125.01 By MS/MS 6.8 2.32 1 1 1 1 1 5 643260000 643260000 0 0 + 7548 44 7858 32173;32174;32175;32176;32177 27133;27134;27135 27133 3 415550000 0 0 LCVLHEK RMPCTEDYLSLILNRLCVLHEKTPVSEKVT YLSLILNRLCVLHEKTPVSEKVTKCCTESL R L C E K T 0 0 0 0 1 0 1 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 7 0 897.47422 CON__P02769 CON__P02769 483 489 yes yes 2 0.011159 118.69 By MS/MS 4 0.816 1 1 1 3 43361000 43361000 0 0 + 7549 45 7859 32178;32179;32180 27136 27136 1 34641000 0 0 LCYVALDFEQEMAMAASSSSLEK TTMAEREIVRDIKEKLCYVALDFEQEMAMA EQEMAMAASSSSLEKSYELPDGQVITIGNE K L C E K S 4 0 0 1 1 1 3 0 0 0 3 1 2 1 0 4 0 0 1 1 0 0 23 0 2579.1594 P0CG38 P0CG38 916 938 POTEI POTE ankyrin domain family member I yes yes 3 0.00047002 62.684 By MS/MS 5 0 1 1 5483200 5483200 0 0 7550 499 7860 32181 27137 27137 1 4392700 0 0 LCYVALDFEQEMATAASSSSLEK TTTAEREIVRDIKEKLCYVALDFEQEMATA EQEMATAASSSSLEKSYELPDGQVITIGNE K L C E K S 4 0 0 1 1 1 3 0 0 0 3 1 1 1 0 4 1 0 1 1 0 0 23 0 2549.1666 P60709;P63261;Q6S8J3 P60709 216 238 ACTB;ACTG1;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member E no no 2;3 2.6621E-112 185.67 By MS/MS By MS/MS 5 0 3 1 2 6661900 0 2072700 4589200 7551 966;1069;1501 7861 32182;32183;32184 27138;27139;27140 27140 3 0 534280 640110 LDAAMAGHIYVSGSAPSFPR QPQLISRNWFGLPGRLDAAMAGHIYVSGSA AGHIYVSGSAPSFPRAKMTKSARRHRKRYR R L D P R A 4 1 0 1 0 0 0 2 1 1 1 0 1 1 2 3 0 0 1 1 0 0 20 0 2045.9993 CON__Q3ZBS7 CON__Q3ZBS7 350 369 yes yes 2;3 4.0422E-14 137.61 By MS/MS By matching By MS/MS 5.3 1.95 1 4 1 2 1 1 3 1 6 73236000 21291000 3060600 48884000 + 7552 88 7862;7863 32185;32186;32187;32188;32189;32190;32191;32192;32193;32194 27141;27142;27143;27144;27145;27146;27147;27148 27145 62 8 25004000 1015700 8023600 LDADLLVPASVK NRGGRKPKRKMKTQKLDADLLVPASVKVLR TQKLDADLLVPASVKVLRRSNRKKIDDPID K L D V K V 2 0 0 2 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 12 0 1239.7075 Q8WWQ0 Q8WWQ0 1725 1736 PHIP PH-interacting protein yes yes 2 0.043008 74.962 By MS/MS By MS/MS 1 0 2 1 1 10270000 0 3460000 6809900 7553 1690 7864 32195;32196 27149;27150 27150 2 0 1691200 1467300 LDADYPLR SSGADCKGDPRNSAKLDADYPLRVLYCGVC DPRNSAKLDADYPLRVLYCGVCSLPTEYCE K L D L R V 1 1 0 2 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 8 0 961.4869 O43583 O43583 23 30 DENR Density-regulated protein yes yes 2 0.0013398 117.17 By matching By MS/MS 6 0 2 1 1 14149000 0 1734100 12414000 7554 202 7865 32197;32198 27151;27152 27152 2 0 600300 1857300 LDAENAIVHMGGQWLGGR TGKSKGYGFVSFYNKLDAENAIVHMGGQWL ENAIVHMGGQWLGGRQIRTNWATRKPPAPK K L D G R Q 2 1 1 1 0 1 1 4 1 1 2 0 1 0 0 0 0 1 0 1 0 0 18 0 1922.9421 Q01085 Q01085 149 166 TIAL1 Nucleolysin TIAR yes yes 2;3 3.0882E-09 124.2 By MS/MS By MS/MS 5 0.756 2 3 2 4 3 31517000 0 9865600 21652000 7555 1129 7866 32199;32200;32201;32202;32203;32204;32205 27153;27154;27155;27156 27153 4 0 2771000 3043400 LDALSNFHFIPKPPVPEIK EHVEIQKMMDSLFLKLDALSNFHFIPKPPV SNFHFIPKPPVPEIKVVSNLPAITMEEVAP K L D I K V 1 0 1 1 0 0 1 0 1 2 2 2 0 2 4 1 0 0 0 1 0 0 19 1 2161.1936 O00566 O00566 507 525 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 3;4 0.0025374 59.512 By MS/MS By MS/MS 3.29 1.03 2 2 2 1 2 5 31644000 0 8445700 23198000 7556 129 7867 32206;32207;32208;32209;32210;32211;32212 27157;27158;27159 27157 3 0 3803200 4234300 LDAVSEVLHSESSVFGQIENHLR WVTQPLLKLREINARLDAVSEVLHSESSVF HSESSVFGQIENHLRKLPDIERGLCSIYHK R L D L R K 1 1 1 1 0 1 3 1 2 1 3 0 0 1 0 4 0 0 0 3 0 0 23 0 2565.2823 P20585 P20585 594 616 MSH3 DNA mismatch repair protein Msh3 yes yes 4 4.9991E-05 73.315 By MS/MS 1.5 0.5 1 1 2 3115500 0 0 3115500 7557 616 7868 32213;32214 27160 27160 1 0 0 697760 LDDEDGDFQPQEDEEEDDEETIEVEEQQEGNDAEAQR GSSSAASSPPPPASRLDDEDGDFQPQEDEE EVEEQQEGNDAEAQRREIELLRREGELPLE R L D Q R R 2 1 1 8 0 5 12 2 0 1 1 0 0 1 1 0 1 0 0 1 0 0 37 0 4323.6967 Q6ZRS2 Q6ZRS2 282 318 SRCAP Helicase SRCAP yes yes 7 0.071313 0.28763 By MS/MS 3 0 1 1 1955700 0 1955700 0 7558 1509 7869 32215 27161 27161 0 0 833730 0 LDDGSIGVVTPYADQVFR RVEELRRKWPVAWGKLDDGSIGVVTPYADQ GSIGVVTPYADQVFRIRAELRKKRLSDVNV K L D F R I 1 1 0 3 0 1 0 2 0 1 1 0 0 1 1 1 1 0 1 3 0 0 18 0 1950.9687 P42694 P42694 945 962 HELZ Probable helicase with zinc finger domain yes yes 2 0.045708 51.875 By MS/MS 1 0 1 1 692650 0 692650 0 7559 805 7870 32216 27162 27162 1 0 338560 0 LDDHALTGASDSR LDAHEDKVWGLHCSRLDDHALTGASDSRVI SRLDDHALTGASDSRVILWKDVTEAEQAEE R L D S R V 2 1 0 3 0 0 0 1 1 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1356.627 Q12788 Q12788 616 628 TBL3 Transducin beta-like protein 3 yes yes 3 0.043653 46.318 By matching By MS/MS 2.5 0.5 1 1 1 1 13011000 0 4945200 8065300 7560 1197 7871 32217;32218 27163 27163 1 0 2226900 1564300 LDDIFEPVLIPEPK NGTVRCEMPELVQHKLDDIFEPVLIPEPKI KLDDIFEPVLIPEPKIRAVSPHFDDMHSNT K L D P K I 0 0 0 2 0 0 2 0 0 2 2 1 0 1 3 0 0 0 0 1 0 0 14 0 1623.876 Q14008 Q14008 1510 1523 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0022722 100.72 By matching By MS/MS 1.33 0.471 2 1 1 2 38998000 0 2389800 36608000 7561 1279 7872 32219;32220;32221 27164;27165;27166 27165 3 0 1168100 7942700 LDDIHPFYADLMNILYDKDHYK NYHDRLSQILTDFPKLDDIHPFYADLMNIL YADLMNILYDKDHYKLALGQINIAKNLVDN K L D Y K L 1 0 1 5 0 0 0 0 2 2 3 2 1 1 1 0 0 0 3 0 0 0 22 1 2738.305 Q9BZE4 Q9BZE4 72 93 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 5 0.0020988 54.668 By MS/MS 3 0.816 1 1 1 3 6756100 0 0 6756100 7562 1941 7873 32222;32223;32224 27167 27167 1 0 0 1330100 LDDLFLESFEITDVKPLK FILGFQVEDALALIRLDDLFLESFEITDVK LFLESFEITDVKPLKGDHLSRAIGRIAGKG R L D L K G 0 0 0 3 0 0 2 0 0 1 4 2 0 2 1 1 1 0 0 1 0 0 18 1 2121.1245 Q9NRX1 Q9NRX1 155 172 PNO1 RNA-binding protein PNO1 yes yes 3 0.00018238 92.211 By MS/MS 6 0 1 1 4475300 0 0 4475300 7563 2047 7874 32225 27168 27168 1 0 0 669550 LDDLVNWAR VAPKPSSRGEYVVAKLDDLVNWARRSSLWP EYVVAKLDDLVNWARRSSLWPMTFGLACCA K L D A R R 1 1 1 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 9 0 1100.5615 O75251 O75251 67 75 NDUFS7 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial yes yes 2 0.000359 109.01 By MS/MS 7 0 1 1 0 0 0 0 7564 249 7875 32226 27169 27169 1 0 0 0 LDDLVRPYVHK ERHLLVKVIDRILYKLDDLVRPYVHKILVV ILYKLDDLVRPYVHKILVVIEPLLIDEDYY K L D H K I 0 1 0 2 0 0 0 0 1 0 2 1 0 0 1 0 0 0 1 2 0 0 11 1 1353.7405 O75533 O75533 563 573 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.062126 46.73 By MS/MS 2 0 1 1 10571000 0 10571000 0 7565 270 7876 32227 27170 27170 1 0 4760100 0 LDDLVSTGK VLENGVDIVVGTPGRLDDLVSTGKLNLSQV VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD R L D G K L 0 0 0 2 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 946.49713 Q92499 Q92499 350 358 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 0.00299 101.64 By MS/MS 3 0 1 1 30334000 0 0 30334000 7566 1705 7877 32228 27171 27171 1 0 0 5883400 LDDMSSIVQK PELLSLNLSNNRLYRLDDMSSIVQKAPNLK NRLYRLDDMSSIVQKAPNLKILNLSGNELK R L D Q K A 0 0 0 2 0 1 0 0 0 1 1 1 1 0 0 2 0 0 0 1 0 0 10 0 1134.5591 Q9UBU9 Q9UBU9 280 289 NXF1 Nuclear RNA export factor 1 yes yes 2 0.0014824 108.98 By MS/MS 3 0 1 1 18224000 0 0 18224000 7567 2136 7878 32229 27172 27172 1 0 0 3534500 LDDTVHVVIATPGR MATTGGTNLRDDIMRLDDTVHVVIATPGRI RLDDTVHVVIATPGRILDLIKKGVAKVDHV R L D G R I 1 1 0 2 0 0 0 1 1 1 1 0 0 0 1 0 2 0 0 3 0 0 14 0 1491.8045 P26196 P26196 212 225 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 3 0.00057724 95.981 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 18343000 0 7874200 10468000 7568 665 7879 32230;32231;32232 27173;27174 27174 2 0 2545100 1709800 LDDTYSFQVINK NIMSIFTFMGANVMRLDDTYSFQVINKTVK VMRLDDTYSFQVINKTVKMVIPALIQSDSG R L D N K T 0 0 1 2 0 1 0 0 0 1 1 1 0 1 0 1 1 0 1 1 0 0 12 0 1441.7089 Q9H583 Q9H583 1337 1348 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.0020909 109.66 By MS/MS By MS/MS 1 0 2 1 1 19752000 0 6083300 13669000 7569 1984 7880 32233;32234 27175;27176 27176 2 0 2973400 2945200 LDDYQER VIDKKLRNLEKKKGKLDDYQERMNKGERLN NLEKKKGKLDDYQERMNKGERLNQDQLDAV K L D E R M 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 7 0 937.41412 Q14444 Q14444 75 81 CAPRIN1 Caprin-1 yes yes 2 0.044005 79.451 By MS/MS 3 0.816 1 1 1 3 4921900 0 4921900 0 7570 1301 7881 32235;32236;32237 27177 27177 1 0 2145400 0 LDELRDEGK ECCQAADKAACLLPKLDELRDEGKASSAKQ ACLLPKLDELRDEGKASSAKQRLKCASLQK K L D G K A 0 1 0 2 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1073.5353 CON__P02768-1;P02768 CON__P02768-1 206 214 ALB Serum albumin yes no 2 9.8578E-53 224.86 By MS/MS 6.08 2.93 1 1 1 1 1 1 1 1 3 1 12 308870000 308870000 0 0 + 7571 44 7882 32238;32239;32240;32241;32242;32243;32244;32245;32246;32247;32248;32249 27178;27179;27180;27181;27182;27183;27184;27185;27186;27187;27188;27189;27190;27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203 27182 26 216360000 0 0 LDELRGQDEGK NYRQLLERLQARQSRLDELRGQDEGKAQEL RQSRLDELRGQDEGKAQELEAKMKWTNLLY R L D G K A 0 1 0 2 0 1 2 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 1 1258.6153 O75683 O75683 250 260 SURF6 Surfeit locus protein 6 yes yes 3 0.048564 51.998 By MS/MS By matching 5.5 0.5 1 1 1 1 2991700 0 2903600 88070 7572 279 7883 32250;32251 27204 27204 1 0 748460 13176 LDELYGTWR HVGRFCIWTESAFRKLDELYGTWRKAASLK ESAFRKLDELYGTWRKAASLKSNYNLPMHK K L D W R K 0 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 9 0 1151.5611 P36578 P36578 260 268 RPL4 60S ribosomal protein L4 yes yes 2 3.8256E-53 218.63 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 31529000 0 8621200 22908000 7573 762 7884 32252;32253;32254;32255 27205;27206;27207;27208 27208 4 0 2361400 3365300 LDENSAFLQFNWK KVSDLEKAAAQRKAKLDENSAFLQFNWKAD AKLDENSAFLQFNWKADVVESWIGEKENSL K L D W K A 1 0 2 1 0 1 1 0 0 0 2 1 0 2 0 1 0 1 0 0 0 0 13 0 1610.7729 Q13813 Q13813 1972 1984 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00023934 147.12 By MS/MS By MS/MS 1 0 2 1 1 11907000 0 3550200 8357100 7574 1268 7885 32256;32257 27209;27210 27209 2 0 1735300 1800700 LDETGNLMISEGHFASETIR AFEAEVQANSGAIVKLDETGNLMISEGHFA NLMISEGHFASETIRTRLMELHRQWELLLE K L D I R T 1 1 1 1 0 0 3 2 1 2 2 0 1 1 0 2 2 0 0 0 0 0 20 0 2219.0528 Q13813 Q13813 102 121 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.3702E-85 240.2 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 36550000 0 6441000 30109000 7575 1268 7886 32258;32259;32260;32261 27211;27212;27213 27212 3 0 3148300 6524000 LDFGNSQGK PSAAFFCVARLQDFKLDFGNSQGKTSQTWH RLQDFKLDFGNSQGKTSQTWHGGIATIFQS K L D G K T 0 0 1 1 0 1 0 2 0 0 1 1 0 1 0 1 0 0 0 0 0 0 9 0 964.46141 O75223 O75223 51 59 GGCT Gamma-glutamylcyclotransferase yes yes 2 1.6483E-05 151.56 By MS/MS 6 3 1 1 1 1 1 1 1 1 8 89664000 89664000 0 0 7576 248 7887 32262;32263;32264;32265;32266;32267;32268;32269 27214;27215;27216 27216 3 111760000 0 0 LDFVCSFLQK TEEGQQILKQPVSERLDFVCSFLQKNRKHP PVSERLDFVCSFLQKNRKHPSSPECLVSAQ R L D Q K N 0 0 0 1 1 1 0 0 0 0 2 1 0 2 0 1 0 0 0 1 0 0 10 0 1255.6271 Q14980 Q14980 61 70 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0018853 107.57 By MS/MS 1 0 1 1 5993800 0 0 5993800 7577 1327 7888 32270 27217 27217 1 0 0 1291500 LDGFPLLR DQFDAIDFSDNEIRKLDGFPLLRRLKTLLV SDNEIRKLDGFPLLRRLKTLLVNNNRICRI K L D L R R 0 1 0 1 0 0 0 1 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 929.53345 P09661 P09661 57 64 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 1.8329E-06 134.44 By MS/MS By MS/MS 6.6 0.49 2 3 2 3 7481900 0 4664900 2817000 7578 491 7889 32271;32272;32273;32274;32275 27218;27219;27220;27221;27222 27222 5 0 2467900 421450 LDGLVETPTGYIESLPR QMMQNPQILAALQERLDGLVETPTGYIESL GLVETPTGYIESLPRVVKRRVNALKNLQVK R L D P R V 0 1 0 1 0 0 2 2 0 1 3 0 0 0 2 1 2 0 1 1 0 0 17 0 1858.9676 P55209 P55209 56 72 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 2;3 8.048E-06 142.91 By MS/MS By MS/MS 5.83 1.77 2 1 1 1 1 1 5 88970000 0 14039000 74930000 7579 940 7890 32276;32277;32278;32279;32280;32281 27223;27224;27225;27226;27227;27228 27226 6 0 4659200 11705000 LDGQTPHDERQDSINAYNEPNSTK ILEDYCMWRNYEYCRLDGQTPHDERQDSIN RQDSINAYNEPNSTKFVFMLSTRAGGLGIN R L D T K F 1 1 3 3 0 2 2 1 1 1 1 1 0 0 2 2 2 0 1 0 0 0 24 1 2728.2325 O60264 O60264 529 552 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 4 0.041205 25.804 By MS/MS 2 0 1 1 6155300 0 6155300 0 7580 223 7891 32282 27229 27229 1 0 2771800 0 LDHKFDLMYAK CMLSNTTAIAEAWARLDHKFDLMYAKRAFV AWARLDHKFDLMYAKRAFVHWYVGEGMEEG R L D A K R 1 0 0 2 0 0 0 0 1 0 2 2 1 1 0 0 0 0 1 0 0 0 11 1 1379.6908 A6NHL2;P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3 P68363 391 401 TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2;3 1.5062E-18 192.38 By matching By MS/MS By MS/MS 4.87 1.84 2 2 2 11 10 6 2 2 2 1 16 22 2119300000 3908400 991580000 1123800000 7581 1077;1515;1883;1078;13 7892;7893 32283;32284;32285;32286;32287;32288;32289;32290;32291;32292;32293;32294;32295;32296;32297;32298;32299;32300;32301;32302;32303;32304;32305;32306;32307;32308;32309;32310;32311;32312;32313;32314;32315;32316;32317;32318;32319;32320;32321 27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260 27235 2 31 3049200 293510000 188740000 LDHYAIIK RQPKYPRKSAPRRNKLDHYAIIKFPLTTES SAPRRNKLDHYAIIKFPLTTESAMKKIEDN K L D I K F 1 0 0 1 0 0 0 0 1 2 1 1 0 0 0 0 0 0 1 0 0 0 8 0 971.54402 P62750 P62750 71 78 RPL23A 60S ribosomal protein L23a yes yes 2 0.00063518 127.12 By MS/MS By MS/MS 7 0 2 1 1 164930000 0 36418000 128510000 7582 1031 7894 32322;32323 27261;27262 27261 2 0 20911000 22803000 LDIDSPPITAR LHAAMADTFLEHMCRLDIDSPPITARNTGI HMCRLDIDSPPITARNTGIICTIGPASRSV R L D A R N 1 1 0 2 0 0 0 0 0 2 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1196.6401 P14618 P14618 33 43 PKM Pyruvate kinase PKM yes yes 2 0.025566 81.099 By MS/MS By MS/MS By matching 6.75 2.77 2 1 1 2 1 1 26566000 6885200 2524600 17156000 7583 559 7895 32324;32325;32326;32327 27263;27264 27263 2 5021000 12773000 2802200 LDILDQER LLAHGHYASPEIKQKLDILDQERADLEKAW SPEIKQKLDILDQERADLEKAWVQRRMMLD K L D E R A 0 1 0 2 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1000.5189 Q13813 Q13813 1420 1427 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0017016 112.17 By MS/MS 1 0 1 1 5702100 0 5702100 0 7584 1268 7896 32328 27265 27265 1 0 2787100 0 LDILDTAGQEEFGAMR DSYTKQCVIDDRAARLDILDTAGQEEFGAM DILDTAGQEEFGAMREQYMRTGEGFLLVFS R L D M R E 2 1 0 2 0 1 2 2 0 1 2 0 1 1 0 0 1 0 0 0 0 0 16 0 1764.8352 P62070;P10301 P62070 64 79 RRAS2;RRAS Ras-related protein R-Ras2;Ras-related protein R-Ras yes no 2 1.3278E-05 152.85 By MS/MS 7 0 1 1 5115100 0 0 5115100 7585 1004 7897 32329 27266 27266 1 0 0 907630 LDILHQVAMWQK GLADLHPDVFATAPRLDILHQVAMWQKNFK APRLDILHQVAMWQKNFKRISYAKTKTRAE R L D Q K N 1 0 0 1 0 2 0 0 1 1 2 1 1 0 0 0 0 1 0 1 0 0 12 0 1480.7861 Q9BYD3 Q9BYD3 93 104 MRPL4 39S ribosomal protein L4, mitochondrial yes yes 3 0.051495 44.847 By matching By MS/MS 6 0 2 1 1 3905400 0 858820 3046600 7586 1935 7898 32330;32331 27267 27267 1 0 297290 455810 LDKAQIHDLVLVGGSTR RSTLEPVEKALRDAKLDKAQIHDLVLVGGS KAQIHDLVLVGGSTRIPKVQKLLQDFFNGR K L D T R I 1 1 0 2 0 1 0 2 1 1 3 1 0 0 0 1 1 0 0 2 0 0 17 1 1821.0108 P0DMV9;P0DMV8 P0DMV9 326 342 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3;4 2.0037E-06 120.92 By MS/MS 3 0 2 2 22519000 0 22519000 0 7587 501 7899 32332;32333 27268;27269 27268 2 0 9599700 0 LDKDIVALMTR CITFQPDLSKFKMEKLDKDIVALMTRRAYD KMEKLDKDIVALMTRRAYDLAGSCRGVKVM K L D T R R 1 1 0 2 0 0 0 0 0 1 2 1 1 0 0 0 1 0 0 1 0 0 11 1 1273.7064 Q02880 Q02880 252 262 TOP2B DNA topoisomerase 2-beta yes yes 2;3 0.0023516 130.98 By matching By MS/MS 1.4 0.49 3 2 1 4 30675000 0 2086400 28589000 7588 1150 7900 32334;32335;32336;32337;32338 27270;27271;27272 27272 3 0 1019800 6234100 LDKSQIHDIVLVGGSTR RGTLDPVEKALRDAKLDKSQIHDIVLVGGS KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK K L D T R I 0 1 0 2 0 1 0 2 1 2 2 1 0 0 0 2 1 0 0 2 0 0 17 1 1837.0058 P11142 P11142 326 342 HSPA8 Heat shock cognate 71 kDa protein yes yes 3;4 2.1854E-06 117.37 By MS/MS 3.5 0.5 2 2 4 46993000 0 46993000 0 7589 517 7901 32339;32340;32341;32342 27273;27274 27274 2 0 19580000 0 LDLAAYDQEGR QNKQVVPVSSHRNPRLDLAAYDQEGRRFDN RNPRLDLAAYDQEGRRFDNFSSLSIQWEST R L D G R R 2 1 0 2 0 1 1 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 11 0 1249.5939 Q8TEM1 Q8TEM1 787 797 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.060823 71.223 By MS/MS 3 0 1 1 6718700 0 6718700 0 7590 1666 7902 32343 27275 27275 1 0 2864200 0 LDLAGPLLAFLFR GRRELDDRDHYGNKRLDLAGPLLAFLFRGM KRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ R L D F R G 2 1 0 1 0 0 0 1 0 0 5 0 0 2 1 0 0 0 0 0 0 0 13 0 1444.8442 P30876 P30876 393 405 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 0.00042114 123.88 By MS/MS 2 0 1 1 1183200 0 0 1183200 7591 715 7903 32344 27276 27276 1 0 0 267380 LDLAGRDLTDYLMK VPIYEGYALPHAILRLDLAGRDLTDYLMKI RLDLAGRDLTDYLMKILTERGYSFTTTAER R L D M K I 1 1 0 3 0 0 0 1 0 0 4 1 1 0 0 0 1 0 1 0 0 0 14 1 1622.8338 P60709;P63261;P68032;P63267;P68133;P62736;Q562R1 P60709 178 191 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 3 0.0061662 71.031 By MS/MS 5.5 0.5 1 1 2 15987000 0 15987000 0 7592 966;1069;1075;1430 7904 32345;32346 27277;27278 27278 2 0 5106400 0 LDLDLTADSQPPVFK VSGLMRKVPRVSLERLDLDLTADSQPPVFK LDLDLTADSQPPVFKVFPGSTTEDYNLIVI R L D F K V 1 0 0 3 0 1 0 0 0 0 3 1 0 1 2 1 1 0 0 1 0 0 15 0 1657.8563 Q13263 Q13263 493 507 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.00047297 143.97 By MS/MS By MS/MS 2 0 2 1 1 50554000 0 13509000 37045000 7593 1235 7905 32347;32348 27279;27280 27279 2 0 6083300 8371400 LDLLGNLPGSK EEKDINTFVGTPVEKLDLLGNLPGSKRRPQ PVEKLDLLGNLPGSKRRPQTPKEKAKALED K L D S K R 0 0 1 1 0 0 0 2 0 0 4 1 0 0 1 1 0 0 0 0 0 0 11 0 1125.6394 P46013 P46013 1928 1938 MKI67 Antigen KI-67 yes no 2 0.0001781 137.98 By MS/MS By MS/MS 2.33 1.37 2 2 1 1 2 4 73845000 0 24711000 49134000 7594 821 7906 32349;32350;32351;32352;32353;32354 27281;27282;27283;27284;27285 27283 5 0 11609000 10454000 LDLQQGQNLLQGLSK CKENGGYTGCPFPAKLDLQQGQNLLQGLSK LDLQQGQNLLQGLSKLSPSTSGPHSHDYLP K L D S K L 0 0 1 1 0 4 0 2 0 0 5 1 0 0 0 1 0 0 0 0 0 0 15 0 1653.905 Q9HCE1 Q9HCE1 953 967 MOV10 Putative helicase MOV-10 yes yes 2 0.00028696 126.5 By MS/MS By MS/MS 3.86 2.8 1 2 1 1 1 1 4 3 40037000 0 25306000 14731000 7595 2011 7907 32355;32356;32357;32358;32359;32360;32361 27286;27287;27288;27289 27289 4 0 13874000 3009400 LDLQYAK LSPATRGAYRDCLGRLDLQYAKLLNSSKAR AYRDCLGRLDLQYAKLLNSSKARLRSLESL R L D A K L 1 0 0 1 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 7 0 849.45962 Q15149 Q15149 734 740 PLEC Plectin yes yes 2 0.029951 92.692 By MS/MS 1 0 1 1 8954100 0 8954100 0 7596 1348 7908 32362 27290 27290 1 0 4376600 0 LDLVHTAALMLDK SHDDLKGDPLLDQRRLDLVHTAALMLDKNN RRLDLVHTAALMLDKNNLVKYDKKTGNFQV R L D D K N 2 0 0 2 0 0 0 0 1 0 4 1 1 0 0 0 1 0 0 1 0 0 13 0 1438.7854 O75643 O75643 954 966 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 0.00093329 100.19 By MS/MS By MS/MS 1 0 2 1 1 6400500 0 1425300 4975200 7597 277 7909 32363;32364 27291;27292 27291 2 0 696680 1072000 LDMEIDGQK IHENASQPEVLVPIRLDMEIDGQKLRDAFT VLVPIRLDMEIDGQKLRDAFTWNMNEKLMT R L D Q K L 0 0 0 2 0 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1047.4907 Q12824 Q12824 191 199 SMARCB1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 yes yes 2 4.9312E-05 148.04 By MS/MS 5 0 1 1 10800000 0 0 10800000 7598 1202 7910 32365 27293 27293 1 0 0 1506400 LDMVPHLETDMMQGGVYGSGGER GSASADSVLSRINQRLDMVPHLETDMMQGG TDMMQGGVYGSGGERYDSYESCDSRAVLSE R L D E R Y 0 1 0 2 0 1 2 5 1 0 2 0 3 0 1 1 1 0 1 2 0 0 23 0 2478.0978 Q9ULX6 Q9ULX6 99 121 AKAP8L A-kinase anchor protein 8-like yes yes 3 5.0759E-10 96.848 By MS/MS 3 0 1 1 3474800 0 0 3474800 7599 2195 7911 32366 27294 27294 1 0 0 673940 LDMYVLHPPSAGAER PAKPTVLFEKMGVGRLDMYVLHPPSAGAER LDMYVLHPPSAGAERTLASVCALLVWHPAG R L D E R T 2 1 0 1 0 0 1 1 1 0 2 0 1 0 2 1 0 0 1 1 0 0 15 0 1654.8137 Q66K74 Q66K74 393 407 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain yes yes 3 0.013841 55.531 By MS/MS 1.5 0.5 1 1 2 8690000 0 0 8690000 7600 1465 7912 32367;32368 27295 27295 1 0 0 1938300 LDNLQQEIDFLTALYQAELSQMQTQISETNVILSMDNNR DVDGAYMTKVDLQAKLDNLQQEIDFLTALY QISETNVILSMDNNRSLDLDSIIAEVKAQY K L D N R S 2 1 4 3 0 6 3 0 0 3 6 0 2 1 0 3 3 0 1 1 0 0 39 0 4526.1945 P04264;CON__P04264 P04264 305 343 KRT1 Keratin, type II cytoskeletal 1 yes no 4 0.0012602 29.561 By MS/MS 5 0 1 1 2464600 0 0 2464600 + 7601 413 7913 32369 27296 27296 1 0 0 343770 LDNVPHTPSSYIETLPK QVMQNPRVLAALQERLDNVPHTPSSYIETL NVPHTPSSYIETLPKAVKRRINALKQLQVR R L D P K A 0 0 1 1 0 0 1 0 1 1 2 1 0 0 3 2 2 0 1 1 0 0 17 0 1909.9785 Q99733 Q99733 45 61 NAP1L4 Nucleosome assembly protein 1-like 4 yes yes 2;3 1.8018E-06 155.34 By MS/MS By MS/MS 4.88 1.36 1 3 2 2 3 5 64894000 0 19008000 45886000 7602 1862 7914 32370;32371;32372;32373;32374;32375;32376;32377 27297;27298;27299;27300;27301 27299 5 0 6347100 7502400 LDPETLESLGLIK LACLYLVSDTVLKERLDPETLESLGLIKQS ERLDPETLESLGLIKQSQQFNQKSVKIKTK R L D I K Q 0 0 0 1 0 0 2 1 0 1 4 1 0 0 1 1 1 0 0 0 0 0 13 0 1426.7919 Q8NI27 Q8NI27 127 139 THOC2 THO complex subunit 2 yes yes 2 0.013913 69.672 By MS/MS 2 0 1 1 0 0 0 0 7603 1647 7915 32378 27302 27302 1 0 0 0 LDPGLIMEQVK EGGFGSDFGGSGSGKLDPGLIMEQVKVQIA GSGKLDPGLIMEQVKVQIAVANAQELLQRM K L D V K V 0 0 0 1 0 1 1 1 0 1 2 1 1 0 1 0 0 0 0 1 0 0 11 0 1241.669 Q9Y5L4 Q9Y5L4 17 27 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes yes 2 0.056421 72.275 By MS/MS 10 0 1 1 8855700 0 8855700 0 7604 2298 7916 32379 27303 27303 1 0 44803000 0 LDPGSEETQTLVR SPDWQVDYESYTWRKLDPGSEETQTLVREY RKLDPGSEETQTLVREYFSWEGAFQHVGKA K L D V R E 0 1 0 1 0 1 2 1 0 0 2 0 0 0 1 1 2 0 0 1 0 0 13 0 1443.7205 P26641 P26641 402 414 EEF1G Elongation factor 1-gamma yes yes 2 0.0011491 112.85 By matching By matching By MS/MS 5.17 1.07 2 2 1 1 1 2 3 785530000 347820000 346670000 91042000 7605 674 7917 32380;32381;32382;32383;32384;32385 27304;27305 27304 2 271360000 111500000 13126000 LDPHLVLDQLR FVRCIIPNHEKKAGKLDPHLVLDQLRCNGV KAGKLDPHLVLDQLRCNGVLEGIRICRQGF K L D L R C 0 1 0 2 0 1 0 0 1 0 4 0 0 0 1 0 0 0 0 1 0 0 11 0 1317.7405 P35579;P35580 P35579 683 693 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 3.6755E-06 149.96 By matching By MS/MS By MS/MS 1.6 0.663 5 4 1 1 4 5 376520000 544780 264730000 111250000 7606 752;753 7918 32386;32387;32388;32389;32390;32391;32392;32393;32394;32395 27306;27307;27308;27309;27310;27311;27312;27313 27310 8 544780 128670000 24016000 LDPHPELLPELGSLPPVNT HSAEAIALEQSRLARLDPHPELLPELGSLP PELLPELGSLPPVNT_______________ R L D N T - 0 0 1 1 0 0 2 1 1 0 5 0 0 0 5 1 1 0 0 1 0 0 19 0 2037.0783 Q96KQ7 Q96KQ7 1192 1210 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes yes 2 0.0031497 69.352 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 10618000 0 3451900 7166300 7607 1805 7919 32396;32397;32398;32399 27314;27315 27315 2 0 1595900 1521800 LDPNKYPVPENWLHK DLIQKHKSIEEIVRRLDPNKYPVPENWLHK LDPNKYPVPENWLHKEAHQLFLEPEVLDPE R L D H K E 0 0 2 1 0 0 1 0 1 0 2 2 0 0 3 0 0 1 1 1 0 0 15 1 1848.9523 P39748 P39748 263 277 FEN1 Flap endonuclease 1 yes yes 3;4 0.010544 60.918 By MS/MS By MS/MS 5 0.632 1 3 1 1 4 37949000 0 5147000 32802000 7608 780 7920 32400;32401;32402;32403;32404 27316;27317;27318 27316 3 0 1326700 4655100 LDPSIFESLQK VIIGLKTAKGTKQLKLDPSIFESLQKERVE KQLKLDPSIFESLQKERVEAGDVIYIEANS K L D Q K E 0 0 0 1 0 1 1 0 0 1 2 1 0 1 1 2 0 0 0 0 0 0 11 0 1275.6711 Q9Y265 Q9Y265 172 182 RUVBL1 RuvB-like 1 yes yes 2 0.00057501 118.71 By MS/MS 4 0.816 1 1 1 3 69228000 0 0 69228000 7609 2234 7921 32405;32406;32407 27319 27319 1 0 0 11168000 LDQAVLDLQR KALYRRSQALEKLGRLDQAVLDLQRCVSLE EKLGRLDQAVLDLQRCVSLEPKNKVFQEAL R L D Q R C 1 1 0 2 0 2 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1169.6404 Q9H3U1 Q9H3U1 108 117 UNC45A Protein unc-45 homolog A yes yes 2 0.00094101 111.61 By MS/MS By matching 2.5 0.5 1 1 1 1 12322000 0 8950700 3371700 7610 1980 7922 32408;32409 27320 27320 1 0 4030600 653940 LDQDKIEALSSK ERVAMTAEACSRQHRLDQDKIEALSSKVQQ QHRLDQDKIEALSSKVQQLERSIGLKDLAM R L D S K V 1 0 0 2 0 1 1 0 0 1 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1345.7089 Q12933 Q12933 309 320 TRAF2 TNF receptor-associated factor 2 yes yes 3 0.010815 73.881 By matching By matching By MS/MS 2.4 1.02 1 2 1 1 2 2 1 48499000 33121000 4860800 10517000 7611 1213 7923 32410;32411;32412;32413;32414 27321 27321 1 33978000 2122700 1717700 LDQLSEIIER YTEAAHRAVLFPQQRLDQLSEIIERFIFVM FPQQRLDQLSEIIERFIFVMPPVEAPPPSL R L D E R F 0 1 0 1 0 1 2 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1214.6507 Q6ZRS2 Q6ZRS2 1966 1975 SRCAP Helicase SRCAP yes yes 2 0.062934 79.148 By MS/MS 1 0 1 1 3604800 0 0 3604800 7612 1509 7924 32415 27322 27322 0 0 0 776720 LDQQTLPLGGR VPKSEAEQKLPLGTRLDQQTLPLGGRELSQ LGTRLDQQTLPLGGRELSQGLLPLPQPYQA R L D G R E 0 1 0 1 0 2 0 2 0 0 3 0 0 0 1 0 1 0 0 0 0 0 11 0 1196.6513 P98175 P98175 253 263 RBM10 RNA-binding protein 10 yes yes 2 0.00015326 138.98 By MS/MS By matching 2.5 0.5 1 1 1 1 18683000 0 14452000 4231900 7613 1117 7925 32416;32417 27323 27323 1 0 6507700 820790 LDQQVEDFR NAEDLQKSLAELSSRLDQQVEDFRRTVGPY AELSSRLDQQVEDFRRTVGPYGETFNKAMV R L D F R R 0 1 0 2 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1148.5462 CON__Q32PJ2 CON__Q32PJ2 296 304 yes yes 2 0.0054114 96.311 By MS/MS 7 0 1 1 3367300 0 0 3367300 + 7614 81 7926 32418 27324 27324 1 0 0 597500 LDQQVEDFRR NAEDLQKSLAELSSRLDQQVEDFRRTVGPY ELSSRLDQQVEDFRRTVGPYGETFNKAMVQ R L D R R T 0 2 0 2 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 1 1304.6473 CON__Q32PJ2 CON__Q32PJ2 296 305 yes yes 2;3 9.668E-11 169.09 By MS/MS By MS/MS 6.9 1.92 3 3 1 1 2 5 5 102360000 28775000 0 73587000 + 7615 81 7927 32419;32420;32421;32422;32423;32424;32425;32426;32427;32428 27325;27326;27327;27328;27329;27330;27331 27329 7 24556000 0 15935000 LDRETEELHHDR AGQNKQHSITKNTAKLDRETEELHHDRVTL TAKLDRETEELHHDRVTLEVGKVIQQGRQS K L D D R V 0 2 0 2 0 0 3 0 2 0 2 0 0 0 0 0 1 0 0 0 0 0 12 1 1548.7281 O60869 O60869 61 72 EDF1 Endothelial differentiation-related factor 1 yes yes 3 0.029206 59.227 By MS/MS 8 0.816 1 1 1 3 4539100 0 0 4539100 7616 237 7928 32429;32430;32431 27332 27332 1 0 0 824350 LDSELKNMQDMVEDYR NLRRRVDQLKSDQSRLDSELKNMQDMVEDY DSELKNMQDMVEDYRNKYEDEINKRTNAEN R L D Y R N 0 1 1 3 0 1 2 0 0 0 2 1 2 0 0 1 0 0 1 1 0 0 16 1 1984.887 P04264;CON__P04264 P04264 252 267 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 2.8683E-18 187.63 By MS/MS By MS/MS By MS/MS 3.95 2.89 5 3 3 2 1 3 2 12 3 4 173800000 135540000 11820000 26438000 + 7617 413 7929;7930;7931 32432;32433;32434;32435;32436;32437;32438;32439;32440;32441;32442;32443;32444;32445;32446;32447;32448;32449;32450 27333;27334;27335;27336;27337;27338;27339;27340;27341;27342;27343;27344 27336 137;138 12 118100000 5598900 5637200 LDSIDPALR LDSRGEIVVIGATNRLDSIDPALRRPGRFD IGATNRLDSIDPALRRPGRFDREFLFSLPD R L D L R R 1 1 0 2 0 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 0 998.53966 Q6PL18;Q9ULI0 Q6PL18 577 585 ATAD2;ATAD2B ATPase family AAA domain-containing protein 2;ATPase family AAA domain-containing protein 2B yes no 2 0.00042633 107.66 By MS/MS 2 0 1 1 0 0 0 0 7618 1498 7932 32451 27345 27345 1 0 0 0 LDSIVIQQGR TVEERIVERAEMKLRLDSIVIQQGRLVDQN EMKLRLDSIVIQQGRLVDQNLNKIGKDEML R L D G R L 0 1 0 1 0 2 0 1 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1127.6299 O60264;P28370 O60264 627 636 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 3.112E-16 176.09 By matching By MS/MS 1.5 0.5 1 1 1 1 31969000 0 1630800 30338000 7619 223;693 7933 32452;32453 27346 27346 1 0 797090 6855800 LDSLTTLYLR LRHNKLREIPSVVYRLDSLTTLYLRFNRIT SVVYRLDSLTTLYLRFNRITTVEKDIKNLS R L D L R F 0 1 0 1 0 0 0 0 0 0 4 0 0 0 0 1 2 0 1 0 0 0 10 0 1193.6656 Q9UQ13 Q9UQ13 191 200 SHOC2 Leucine-rich repeat protein SHOC-2 yes yes 2 1.367E-05 109.71 By MS/MS 2 0.816 1 1 1 3 8609000 0 0 8609000 7620 2218 7934 32454;32455;32456 27347 27347 0 0 0 1793600 LDSQKHIDFSLR RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY IVRLDSQKHIDFSLRSPYGGGRPGRVKRKN R L D L R S 0 1 0 2 0 1 0 0 1 1 2 1 0 1 0 2 0 0 0 0 0 0 12 1 1457.7627 P46781 P46781 151 162 RPS9 40S ribosomal protein S9 yes yes 3 0.050775 49.929 By MS/MS 7 0 1 1 1905000 0 1905000 0 7621 831 7935 32457 27348 27348 1 0 1093800 0 LDSSPSVSSTLAAK GLTPANSQASKATPKLDSSPSVSSTLAAKD KLDSSPSVSSTLAAKDDPDGKQEAKPQQAA K L D A K D 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 1 0 0 14 0 1361.7038 Q13428 Q13428 1225 1238 TCOF1 Treacle protein yes yes 2 0.0011039 109.24 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 45682000 0 9597600 36085000 7622 1247 7936 32458;32459;32460;32461;32462;32463 27349;27350;27351;27352 27349 4 0 3854900 7690100 LDSVLLLSSMNLPGGELR TEVQQKRWKVETNSRLDSVLLLSSMNLPGG VLLLSSMNLPGGELRRRSAEDELAMRGFLQ R L D L R R 0 1 1 1 0 0 1 2 0 0 6 0 1 0 1 3 0 0 0 1 0 0 18 0 1913.0292 Q13868 Q13868 104 121 EXOSC2 Exosome complex component RRP4 yes yes 2 2.758E-16 174.9 By MS/MS By MS/MS 6 0 2 1 1 7437700 0 1958200 5479400 7623 1273 7937 32464;32465 27353;27354 27354 2 0 677870 819780 LDTAMWLSR GPQGAGAVQFMMTNKLDTAMWLSRLFTVYC FMMTNKLDTAMWLSRLFTVYCSALFVLPLL K L D S R L 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 1 1 1 0 0 0 0 9 0 1091.5434 P57088 P57088 23 31 TMEM33 Transmembrane protein 33 yes yes 2 0.02712 78.113 By matching By MS/MS 6.67 0.471 1 2 2 1 5278300 0 2113200 3165100 7624 954 7938 32466;32467;32468 27355 27355 1 0 1114100 561630 LDTSQWPLLLK HAEEFLIKPESKVAKLDTSQWPLLLKNFDK KVAKLDTSQWPLLLKNFDKLNVRTTHYTPL K L D L K N 0 0 0 1 0 1 0 0 0 0 4 1 0 0 1 1 1 1 0 0 0 0 11 0 1312.7391 O60832 O60832 47 57 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 1.7714E-27 205.83 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 46780000 0 32108000 14671000 7625 235 7939 32469;32470;32471 27356;27357;27358;27359;27360;27361 27358 6 0 10900000 2396300 LDVGEAMAPPSHR GSLQTGKPSAPKKLKLDVGEAMAPPSHRKG LKLDVGEAMAPPSHRKGDSNANSDVCAAAL K L D H R K 2 1 0 1 0 0 1 1 1 0 1 0 1 0 2 1 0 0 0 1 0 0 13 0 1378.6663 Q8IZL8 Q8IZL8 499 511 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 0.0030458 81.278 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 29057000 0 2800100 26257000 7626 1596 7940 32472;32473;32474;32475 27362;27363;27364 27364 2 0 1260900 5697500 LDVGNFSWGSECCTR TVRVRGGNKKYRALRLDVGNFSWGSECCTR LDVGNFSWGSECCTRKTRIIDVVYNASNNE R L D T R K 0 1 1 1 2 0 1 2 0 0 1 0 0 1 0 2 1 1 0 1 0 0 15 0 1786.7403 P62241 P62241 60 74 RPS8 40S ribosomal protein S8 yes yes 2 0.0003911 136.7 By MS/MS 7 0 1 1 8376400 0 0 8376400 7627 1008 7941 32476 27365 27365 1 0 0 1486300 LDVQFAGTAK PTHFTVLTKGAGKAKLDVQFAGTAKGEVVR AGKAKLDVQFAGTAKGEVVRDFEIIDNHDY K L D A K G 2 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 10 0 1048.5553 Q14315 Q14315 902 911 FLNC Filamin-C yes yes 2 0.0030418 103.55 By MS/MS 1 0 1 1 6245300 0 6245300 0 7628 1298 7942 32477 27366 27366 1 0 3052600 0 LDVTLGPVPEIGGSEAPAPQNK QCLAEFKRDLEWVERLDVTLGPVPEIGGSE VPEIGGSEAPAPQNKDQKAVDPEDDFQREM R L D N K D 2 0 1 1 0 1 2 3 0 1 2 1 0 0 4 1 1 0 0 2 0 0 22 0 2188.1376 Q99848 Q99848 70 91 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2 3.857E-14 118.08 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 39774000 0 6721600 33052000 7629 1866 7943 32478;32479;32480 27367;27368 27367 1 0 1899000 4610200 LDYFLLSHSLLPALCDSK WTYMMNARSKNVGWRLDYFLLSHSLLPALC FLLSHSLLPALCDSKIRSKALGSDHCPITL R L D S K I 1 0 0 2 1 0 0 0 1 0 6 1 0 1 1 3 0 0 1 0 0 0 18 0 2091.0711 P27695 P27695 282 299 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 3 0.0063455 54.427 By MS/MS 6 0 1 1 3485900 0 0 3485900 7630 680 7944 32481 27369 27369 1 0 0 521520 LDYGQHVVAGTPGR HACIGGTNVGEDIRKLDYGQHVVAGTPGRV KLDYGQHVVAGTPGRVFDMIRRRSLRTRAI K L D G R V 1 1 0 1 0 1 0 3 1 0 1 0 0 0 1 0 1 0 1 2 0 0 14 0 1468.7423 P38919 P38919 153 166 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2;3 1.8785E-08 174.21 By MS/MS By MS/MS 4.2 1.6 1 4 2 3 294790000 0 100300000 194490000 7631 775 7945 32482;32483;32484;32485;32486 27370;27371;27372;27373;27374 27371 5 0 25854000 27768000 LDYHKEQAAQLR MSLWVDKYRPCSLGRLDYHKEQAAQLRNLV LGRLDYHKEQAAQLRNLVQCGDFPHLLVYG R L D L R N 2 1 0 1 0 2 1 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 12 1 1470.7579 P40938 P40938 16 27 RFC3 Replication factor C subunit 3 yes yes 3 0.031866 57.477 By MS/MS By matching 6 0.816 1 1 1 2 1 7425200 0 4991300 2433900 7632 788 7946 32487;32488;32489 27375 27375 1 0 1582600 431880 LDYILGLK RRLVRIGVLDEGKMKLDYILGLKIEDFLER LDEGKMKLDYILGLKIEDFLERRLQTQVFK K L D L K I 0 0 0 1 0 0 0 1 0 1 3 1 0 0 0 0 0 0 1 0 0 0 8 0 933.55352 P46781 P46781 94 101 RPS9 40S ribosomal protein S9 yes yes 2 0.0012844 117.93 By MS/MS By MS/MS 5.7 2.9 1 1 1 1 1 2 1 1 1 1 9 273590000 0 49767000 223820000 7633 831 7947 32490;32491;32492;32493;32494;32495;32496;32497;32498;32499 27376;27377;27378 27376 3 0 28576000 45076000 LDYLGVSYGLTPR LPPLLLKLNERPAERLDYLGVSYGLTPRLL ERLDYLGVSYGLTPRLLKFWKRAGFVPVYL R L D P R L 0 1 0 1 0 0 0 2 0 0 3 0 0 0 1 1 1 0 2 1 0 0 13 0 1452.7613 Q9H0A0 Q9H0A0 706 718 NAT10 N-acetyltransferase 10 yes yes 2 7.7674E-05 155 By MS/MS By MS/MS By MS/MS 2.4 1.28 3 3 2 1 1 2 5 3 73209000 1701300 30950000 40558000 7634 1959 7948 32500;32501;32502;32503;32504;32505;32506;32507;32508;32509 27379;27380;27381;27382;27383;27384;27385 27384 7 1701300 13178000 8972300 LDYQESPPGKEISCWSVEL LKVQGRDYSATRELKLDYQESPPGKEISCW ESPPGKEISCWSVEL_______________ K L D E L - 0 0 0 1 1 1 3 1 0 1 2 1 0 0 2 3 0 1 1 1 0 0 19 1 2236.0358 CON__Q3T052 CON__Q3T052 898 916 yes yes 3 0.060816 31.514 By MS/MS 5 0 1 1 127910000 0 0 127910000 + 7635 85 7949 32510 27386 27386 1 0 0 17842000 LEAADEGSGDVK IRKELEQIFCQFDSKLEAADEGSGDVKYHL DSKLEAADEGSGDVKYHLGMYHRRINRVTD K L E V K Y 2 0 0 2 0 0 2 2 0 0 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1189.5463 Q02218;Q9ULD0 Q02218 337 348 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial yes no 2 0.019035 79.974 By MS/MS 2 0 1 1 0 0 0 0 7636 1144 7950 32511 27387 27387 1 0 0 0 LEAALGEAK TLEGELHDLRGQVAKLEAALGEAKKQLQDE RGQVAKLEAALGEAKKQLQDEMLRRVDAEN K L E A K K 3 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 9 0 900.49165 P02545 P02545 172 180 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.011786 87.639 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 2 3 369520000 0 11589000 357930000 7637 387 7951 32512;32513;32514;32515;32516 27388;27389 27389 2 0 4048000 68200000 LEAEIATYR RQAQEYEALLNIKVKLEAEIATYRRLLEDG LNIKVKLEAEIATYRRLLEDGEDFNLGDAL K L E Y R R 2 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1064.5502 CON__P05784;P05783 P05783 373 381 KRT18 Keratin, type I cytoskeletal 18 no no 2 5.1201E-24 194.2 By MS/MS By MS/MS By MS/MS 5 1.2 1 1 3 1 1 1 1 5 441240000 12164000 71594000 357480000 + 7638 436;48 7952 32517;32518;32519;32520;32521;32522;32523 27390;27391;27392;27393;27394;27395;27396;27397 27391 5 9744500 18455000 53342000 LEAEIATYRR RQAQEYEALLNIKVKLEAEIATYRRLLEDG NIKVKLEAEIATYRRLLEDGEDFNLGDALD K L E R R L 2 2 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 1 1220.6513 CON__P05784;P05783 P05783 373 382 KRT18 Keratin, type I cytoskeletal 18 no no 3 0.0068913 75.509 By MS/MS 5 0 1 1 2481200 0 2481200 0 + 7639 436;48 7953 32524 27398 27398 1 0 639570 0 LEAELAAHEPAIQGVLDTGK RDLTGVQNLRKKHKRLEAELAAHEPAIQGV AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQ R L E G K K 4 0 0 1 0 1 3 2 1 1 3 1 0 0 1 0 1 0 0 1 0 0 20 0 2061.0742 Q13813 Q13813 1809 1828 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.00029211 67.866 By MS/MS By MS/MS 1 0 2 1 1 9524800 0 2922000 6602800 7640 1268 7954 32525;32526 27399;27400 27399 2 0 1428200 1422700 LEAELGNMQGLVEDFK NLRRQLETLGQEKLKLEAELGNMQGLVEDF EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L E F K N 1 0 1 1 0 1 3 2 0 0 3 1 1 1 0 0 0 0 0 1 0 0 16 0 1791.8713 CON__P05787;P05787 CON__P05787 161 176 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.8433E-12 176.51 By MS/MS By MS/MS 3.62 1.5 1 2 3 4 2 1 2 11 860100000 0 4016500 856080000 + 7641 49 7955;7956 32527;32528;32529;32530;32531;32532;32533;32534;32535;32536;32537;32538;32539 27401;27402;27403;27404;27405;27406;27407;27408;27409;27410 27406 28 10 0 1368100 140950000 LEAEMEAAR QREQVDRNIREAKEKLEAEMEAARHEHQLM REAKEKLEAEMEAARHEHQLMLMRQDLMRR K L E A R H 3 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 9 0 1018.4753 Q8WXF1 Q8WXF1 304 312 PSPC1 Paraspeckle component 1 yes yes 2 0.0071701 93.162 By MS/MS 3.5 0.5 1 1 2 10621000 0 0 10621000 7642 1695 7957 32540;32541 27411 27411 1 0 0 1985500 LEAFHER TERRREREQREREQRLEAFHERKEKARLQR EQREREQRLEAFHERKEKARLQRERLQLEC R L E E R K 1 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 7 0 900.44537 Q14151 Q14151 651 657 SAFB2 Scaffold attachment factor B2 yes yes 2 0.02764 94.662 By MS/MS 2 0 1 1 2110300 0 0 2110300 7643 1285 7958 32542 27412 27412 1 0 0 476880 LEAHSDWVR LWKEEEDGQWKEEQKLEAHSDWVRDVAWAP WKEEQKLEAHSDWVRDVAWAPSIGLPTSTI K L E V R D 1 1 0 1 0 0 1 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 9 0 1111.5411 P55735 P55735 208 216 SEC13 Protein SEC13 homolog yes yes 2 0.0075741 92.439 By MS/MS 6 0 1 1 8237300 0 0 8237300 7644 942 7959 32543 27413 27413 1 0 0 1232400 LEAIITPPPAK IHPELLAKKRGSKGKLEAIITPPPAKKAKS SKGKLEAIITPPPAKKAKSPSQKKPVSKKA K L E A K K 2 0 0 0 0 0 1 0 0 2 1 1 0 0 3 0 1 0 0 0 0 0 11 0 1148.6805 O75367 O75367 124 134 H2AFY Core histone macro-H2A.1 yes yes 2 0.019277 84.615 By MS/MS By MS/MS 5 0 2 1 1 65212000 0 14829000 50382000 7645 253 7960 32544;32545 27414;27415;27416 27416 3 0 3822500 7027400 LEALDANSR EPESIRKWREEQMERLEALDANSRKQEAEW EEQMERLEALDANSRKQEAEWKEKAIKELE R L E S R K 2 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 987.49852 P09496 P09496 121 129 CLTA Clathrin light chain A yes yes 2 3.4288E-05 149.65 By matching By MS/MS By MS/MS 6 0 3 1 1 1 49444000 2472000 11240000 35732000 7646 486 7961 32546;32547;32548 27417;27418 27418 2 3291500 3890800 5345900 LEALITQTR MRLRSGGTEGLLAEKLEALITQTRAKQAAT GLLAEKLEALITQTRAKQAATMSEVEWRGR K L E T R A 1 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1043.5975 Q9UHB9 Q9UHB9 278 286 SRP68 Signal recognition particle subunit SRP68 yes yes 2 2.8788E-05 150.24 By MS/MS 3 0 1 1 13205000 0 0 13205000 7647 2152 7962 32549 27419 27419 1 0 0 2561200 LEALKEGGGSLAEYHAK LAPYSDDLRQRLTARLEALKEGGGSLAEYH ALKEGGGSLAEYHAKASEQLKALGEKAKPV R L E A K A 3 0 0 0 0 0 3 3 1 0 3 2 0 0 0 1 0 0 1 0 0 0 17 1 1771.9105 CON__P15497 CON__P15497 201 217 yes yes 3 1.7598E-06 128.69 By MS/MS By MS/MS 8.5 1.5 1 1 1 1 26864000 25067000 1797000 0 + 7648 59 7963 32550;32551 27420;27421 27420 2 54025000 9091400 0 LEATMLR TVIQAIRRDPEACEKLEATMLRLRRDQKEA RDPEACEKLEATMLRLRRDQKEALLRFCVT K L E L R L 1 1 0 0 0 0 1 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 7 0 832.44767 Q12788 Q12788 699 705 TBL3 Transducin beta-like protein 3 yes yes 2 0.073304 71.715 By MS/MS 2 0.816 1 1 1 3 21784000 0 0 21784000 7649 1197 7964 32552;32553;32554 27422 27422 1 0 0 4509800 LEAVQYK VKPQLEEKTNETYGKLEAVQYKTQVVAGTN KTNETYGKLEAVQYKTQVVAGTNYYIKVRA K L E Y K T 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 7 0 849.45962 P01040 P01040 38 44 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2 0.037224 86.086 By MS/MS By matching 8.6 1.5 1 1 1 2 4 1 275560000 263300000 0 12258000 7650 374 7965 32555;32556;32557;32558;32559 27423;27424;27425 27423 3 342790000 0 26809000 LEDELNR VKIKVLEQDKARLQRLEDELNRAKSTLEAE QDKARLQRLEDELNRAKSTLEAETRVKQRL R L E N R A 0 1 1 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 887.43486 P15924 P15924 1832 1838 DSP Desmoplakin yes yes 2 1.1565E-07 170.94 By MS/MS By MS/MS 7 2.83 1 1 1 1 1 1 2 6 2 29400000 28546000 0 853930 7651 572 7966 32560;32561;32562;32563;32564;32565;32566;32567 27426;27427;27428;27429;27430 27429 5 29195000 0 1867600 LEDFRDYRR EDRVPQKTIQEMQQKLEDFRDYRRVHKPPK QEMQQKLEDFRDYRRVHKPPKVQEKCQLEI K L E R R V 0 3 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 9 2 1268.6262 O43707;Q08043;P12814;P35609 O43707 332 340 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 3 0.032952 62.463 By MS/MS 2 0 1 1 21297000 0 21297000 0 7652 210;540 7967 32568 27431 27431 1 0 9590300 0 LEDIFQQEFSTPSR YGSLIPLSTDEVVEKLEDIFQQEFSTPSRK KLEDIFQQEFSTPSRKGLVLQLIQSYQRMP K L E S R K 0 1 0 1 0 2 2 0 0 1 1 0 0 2 1 2 1 0 0 0 0 0 14 0 1695.8104 Q9H4L4 Q9H4L4 343 356 SENP3 Sentrin-specific protease 3 yes yes 2 0.00054558 138.99 By matching By MS/MS 1.75 0.829 2 1 1 1 3 18767000 786540 0 17981000 7653 1983 7968 32569;32570;32571;32572 27432 27432 1 786540 0 3754500 LEDLEVIQHR DEKEQWLNNMQIPEKLEDLEVIQHRFESLE QIPEKLEDLEVIQHRFESLEPEMNNQASRV K L E H R F 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1250.6619 Q01082 Q01082 881 890 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.00063563 102.06 By MS/MS 1 0 1 1 5015700 0 5015700 0 7654 1128 7969 32573 27433 27433 1 0 2451600 0 LEDLLQDAQDEKEQLNEYK LRRKYSCDRSATVTRLEDLLQDAQDEKEQL LQDAQDEKEQLNEYKGHLSGLAKRAKAVVQ R L E Y K G 1 0 1 3 0 3 4 0 0 0 4 2 0 0 0 0 0 0 1 0 0 0 19 1 2320.1071 Q15149 Q15149 897 915 PLEC Plectin yes yes 3 2.5253E-13 170.47 By MS/MS 1.5 0.5 1 1 2 19221000 0 0 19221000 7655 1348 7970 32574;32575 27434 27434 1 0 0 4173700 LEDLNFPEIK LRDREIQLEISGKERLEDLNFPEIKRRKMA SGKERLEDLNFPEIKRRKMADRKDEDRKQF R L E I K R 0 0 1 1 0 0 2 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 10 0 1216.634 Q9Y3T9 Q9Y3T9 640 649 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.013686 90.906 By MS/MS 3 0 1 1 0 0 0 0 7656 2277 7971 32576 27435 27435 1 0 0 0 LEDQLAGLQQELAALALK TQESFQESSVKELRRLEDQLAGLQQELAAL QLAGLQQELAALALKQSSVAEEVGLLPQQI R L E L K Q 4 0 0 1 0 3 2 1 0 0 6 1 0 0 0 0 0 0 0 0 0 0 18 0 1923.0677 Q9UH99 Q9UH99 414 431 SUN2 SUN domain-containing protein 2 yes yes 2 3.2332E-08 115.12 By MS/MS 3 0 1 1 7418100 0 0 7418100 7657 2148 7972 32577 27436 27436 1 0 0 1438800 LEDVLPLAFTR RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP PQVKLEDVLPLAFTRLCEPKEASYSLIRKY K L E T R L 1 1 0 1 0 0 1 0 0 0 3 0 0 1 1 0 1 0 0 1 0 0 11 0 1272.7078 Q5SSJ5 Q5SSJ5 259 269 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 3.6677E-05 147.12 By MS/MS By MS/MS 3.57 1.59 1 1 1 2 1 1 2 5 189800000 0 7590900 182210000 7658 1445 7973 32578;32579;32580;32581;32582;32583;32584 27437;27438;27439;27440;27441;27442;27443 27440 7 0 2977200 33955000 LEEAEKAADESER ELDRAQERLATALQKLEEAEKAADESERGM QKLEEAEKAADESERGMKVIESRAQKDEEK K L E E R G 3 1 0 1 0 0 5 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 13 1 1475.674 P06753;P09493;CON__Q3SX28;P07951;P67936 P09493 113 125 TPM3;TPM1;TPM2;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin beta chain;Tropomyosin alpha-4 chain no no 3 0.025255 58.21 By MS/MS By matching 6 0 2 1 1 4802600 0 4371500 431090 + 7659 485;450;1074 7974 32585;32586 27444 27444 1 0 1513300 64496 LEEANGNTQMVEK ENIPTDRHIWITAAKLEEANGNTQMVEKII AKLEEANGNTQMVEKIIDRAITSLRANGVE K L E E K I 1 0 2 0 0 1 3 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 13 0 1461.677 O94906 O94906 473 485 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 2.8822E-11 177.44 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 12870000 0 5825000 7044800 7660 305 7975 32587;32588;32589;32590 27445;27446;27447 27445 3 0 2580300 1460700 LEEDDGDVAMSDAQDGPR NRRSGRGGSGIRSSRLEEDDGDVAMSDAQD DDGDVAMSDAQDGPRVRYNPYTTRPNRRGD R L E P R V 2 1 0 5 0 1 2 2 0 0 1 0 1 0 1 1 0 0 0 1 0 0 18 0 1918.7851 Q9UBU9 Q9UBU9 52 69 NXF1 Nuclear RNA export factor 1 yes yes 2 1.0158E-08 150.11 By MS/MS 3 0 1 1 7311300 0 0 7311300 7661 2136 7976 32591 27448 27448 1 0 0 1418000 LEEDISSSMTNSTAASRPPVTLR PTNAIFKAFAMIIDKLEEDISSSMTNSTAA MTNSTAASRPPVTLRLVVPASQCGSLIGKG K L E L R L 2 2 1 1 0 0 2 0 0 1 2 0 1 0 2 5 3 0 0 1 0 0 23 1 2461.2119 Q15366 Q15366 79 101 PCBP2 Poly(rC)-binding protein 2 yes yes 3 6.1894E-07 79.635 By MS/MS 6 0 1 1 9487200 0 0 9487200 7662 1357 7977 32592 27449 27449 1 0 0 1419400 LEEELEGMR RLKRTASEDSCKRKKLEEELEGMRRSLKEQ SCKRKKLEEELEGMRRSLKEQAIKITNLTQ K L E M R R 0 1 0 0 0 0 4 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1104.5121 P15924 P15924 1594 1602 DSP Desmoplakin yes yes 2 0.062217 67.981 By matching By MS/MS 6 0 2 1 1 20900000 4998700 0 15901000 7663 572 7978 32593;32594 27450 27450 1 6655800 0 2379000 LEEGEVAMGR SSKTLLCLSLTGPHKLEEGEVAMGRVVKVT TGPHKLEEGEVAMGRVVKVTPNEGLTVSFP K L E G R V 1 1 0 0 0 0 3 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1089.5125 Q14690 Q14690 1227 1236 PDCD11 Protein RRP5 homolog yes yes 2 0.0023943 101.72 By MS/MS By MS/MS 1 0 2 1 1 8520000 0 8520000 0 7664 1314 7979 32595;32596 27451;27452 27452 2 0 4164400 0 LEELHVIDVK PLDRDNKELKAFNIRLEELHVIDVKFLYGC AFNIRLEELHVIDVKFLYGCQAPTICFVYQ R L E V K F 0 0 0 1 0 0 2 0 1 1 2 1 0 0 0 0 0 0 0 2 0 0 10 0 1193.6656 Q16531 Q16531 159 168 DDB1 DNA damage-binding protein 1 yes yes 2 0.015392 85.622 By MS/MS 1.5 0.5 1 1 2 19210000 0 0 19210000 7665 1387 7980 32597;32598 27453 27453 1 0 0 4263300 LEELTDELIR L E I R 0 1 0 1 0 0 3 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1229.6503 REV__Q8IYY4 yes yes 2 0.0067625 94.114 By MS/MS By MS/MS 6 0 4 2 2 26070000 0 7865900 18205000 + 7666 2339 7981 32599;32600;32601;32602 27454;27455 27454 2 0 2722900 2723600 LEELTMDGAK FIGNRRELNEDKLEKLEELTMDGAKAKAIL DKLEKLEELTMDGAKAKAILDASRSSMGMD K L E A K A 1 0 0 1 0 0 2 1 0 0 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1105.5325 O00567 O00567 231 240 NOP56 Nucleolar protein 56 yes yes 2 0.0064959 94.692 By MS/MS 3 0 2 2 49367000 0 0 49367000 7667 130 7982 32603;32604 27456;27457 27456 2 0 0 9574800 LEENIDNIKR MGQMQVLQMKSEHQKLEENIDNIKRNHNLA SEHQKLEENIDNIKRNHNLALGRQKGYEEE K L E K R N 0 1 2 1 0 0 2 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 10 1 1242.6568 Q92878 Q92878 1060 1069 RAD50 DNA repair protein RAD50 yes yes 3 0.0045582 79.489 By MS/MS 1.5 0.5 1 1 2 17074000 0 0 17074000 7668 1726 7983 32605;32606 27458 27458 1 0 0 3742300 LEEQEEDTFR PPPEPRSLTAEEVKRLEEQEEDTFRELRIF EEVKRLEEQEEDTFRELRIFLRNVTHRLAI R L E F R E 0 1 0 1 0 1 4 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 10 0 1294.5677 Q6PL18 Q6PL18 978 987 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 1.235E-07 162.49 By MS/MS 1.5 0.5 1 1 2 11254000 0 0 11254000 7669 1498 7984 32607;32608 27459 27459 1 0 0 2469100 LEEQLGR ALRALVKEQGDRICRLEEQLGRMENGDA__ EQGDRICRLEEQLGRMENGDA_________ R L E G R M 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 843.44503 Q9BR76;A9Z1Z3 Q9BR76 477 483 CORO1B;FER1L4 Coronin-1B;Fer-1-like protein 4 yes no 2 0.067816 73.039 By matching By MS/MS 3 0.816 1 1 1 1 2 5300800 3533500 1767300 0 7670 1887 7985 32609;32610;32611 27460 27460 1 4257400 666850 0 LEEQLMK KTKKVVESKKKAVQRLEEQLMKLEVQATDR SKKKAVQRLEEQLMKLEVQATDREENKQIA R L E M K L 0 0 0 0 0 1 2 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 7 0 889.4579 P11387 P11387 694 700 TOP1 DNA topoisomerase 1 yes yes 2 3.0741E-09 131.04 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 20042000 0 20042000 0 7671 523 7986 32612;32613;32614 27461;27462;27463 27463 3 0 9025400 0 LEEQLQDLDVALK EWFCPPCQHKLLCEKLEEQLQDLDVALKKK EKLEEQLQDLDVALKKKERAERRKERLVYV K L E L K K 1 0 0 2 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 1 0 0 13 0 1512.8035 Q96T23 Q96T23 947 959 RSF1 Remodeling and spacing factor 1 yes yes 2 0.0039972 103.21 By matching By MS/MS 2 0 2 1 1 18945000 7815000 0 11130000 7672 1837 7987 32615;32616 27464 27464 1 9416100 0 2515100 LEEVGVR LLERAEAWRQKLHGRLEEVGVRAQDRLDKI WRQKLHGRLEEVGVRAQDRLDKIRQQLEEV R L E V R A 0 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 7 0 800.43922 CON__Q03247 CON__Q03247 235 241 yes yes 2 0.0031037 141.98 By MS/MS By MS/MS By MS/MS 7.55 1.67 1 3 2 1 2 2 4 1 6 357970000 54425000 8106700 295440000 + 7673 72 7988 32617;32618;32619;32620;32621;32622;32623;32624;32625;32626;32627 27465;27466;27467;27468;27469;27470;27471;27472;27473;27474;27475;27476;27477 27470 13 70140000 2806300 116760000 LEEYITTSK QKLREIEENQKRIEKLEEYITTSKQSLEEQ QKRIEKLEEYITTSKQSLEEQKKLEGELTE K L E S K Q 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 2 0 1 0 0 0 9 0 1082.5496 Q14683 Q14683 438 446 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0041427 98.582 By MS/MS 2 0 1 1 7822400 0 7822400 0 7674 1312 7989 32628 27478 27478 1 0 3522500 0 LEFIVSTGPYPSESAMTK QVLMIMNKGLGSNERLEFIVSTGPYPSESA IVSTGPYPSESAMTKAVFPLSNGSSGGWSA R L E T K A 1 0 0 0 0 0 2 1 0 1 1 1 1 1 2 3 2 0 1 1 0 0 18 0 1955.955 Q08188 Q08188 54 71 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.059479 48.704 By MS/MS 9 0.816 1 1 1 3 5092400 5092400 0 0 7675 1181 7990 32629;32630;32631 27479 27479 1 4284700 0 0 LEGDSTDLSDQIAELQAQIAELK REEKQRQELEKTRRKLEGDSTDLSDQIAEL SDQIAELQAQIAELKMQLAKKEEELQAALA K L E L K M 3 0 0 3 0 3 3 1 0 2 4 1 0 0 0 2 1 0 0 0 0 0 23 0 2486.2388 P35579 P35579 1053 1075 MYH9 Myosin-9 yes yes 3 6.0484E-08 88.09 By MS/MS 1 0 1 1 1430900 0 1430900 0 7676 752 7991 32632 27480 27480 1 0 699400 0 LEGIITR QLQQENRQLLNERIKLEGIITRVETYLNEN QLLNERIKLEGIITRVETYLNENLRKRLDQ K L E T R V 0 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 7 0 800.4756 Q9UQE7 Q9UQE7 821 827 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.011563 117.93 By matching By MS/MS 2 0 2 1 1 23394000 19243000 0 4150500 7677 2222 7992 32633;32634 27481 27481 1 23186000 0 937930 LEGLGSSEADQDGLASTVR KSQEHEQRLAALQGRLEGLGSSEADQDGLA GSSEADQDGLASTVRSLGETQLVLYGDVEE R L E V R S 2 1 0 2 0 1 2 3 0 0 3 0 0 0 0 3 1 0 0 1 0 0 19 0 1903.9123 Q07065 Q07065 455 473 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 9.4546E-80 241.51 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 25957000 0 3228500 22728000 7678 1176 7993 32635;32636;32637;32638 27482;27483 27483 2 0 1376300 4447700 LEGLTDEINFLR DVDEAYMNKVELESRLEGLTDEINFLRQLY ESRLEGLTDEINFLRQLYEEEIRELQSQIS R L E L R Q 0 1 1 1 0 0 2 1 0 1 3 0 0 1 0 0 1 0 0 0 0 0 12 0 1418.7405 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 214 225 KRT8 Keratin, type II cytoskeletal 8 yes no 2 4.6554E-89 255.07 By MS/MS By MS/MS By MS/MS 4.21 1.96 2 2 3 4 3 2 2 1 2 7 10 2180300000 70665000 230150000 1879500000 + 7679 49 7994 32639;32640;32641;32642;32643;32644;32645;32646;32647;32648;32649;32650;32651;32652;32653;32654;32655;32656;32657 27484;27485;27486;27487;27488;27489;27490;27491;27492;27493;27494;27495;27496;27497;27498;27499;27500;27501;27502;27503;27504 27490 21 55355000 76489000 311020000 LEGNTVGVEAAR VIKEIEDFDSLEALRLEGNTVGVEAARVIA ALRLEGNTVGVEAARVIAKALEKKSELKRC R L E A R V 2 1 1 0 0 0 2 2 0 0 1 0 0 0 0 0 1 0 0 2 0 0 12 0 1214.6255 P46060 P46060 56 67 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.0050488 103.08 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 23508000 0 4769500 18738000 7680 822 7995 32658;32659;32660 27505;27506 27505 2 0 1945300 3634300 LEGPFNIESVMDPIDVK EWNNFIDAMLMVAERLEGPFNIESVMDPID GPFNIESVMDPIDVKISDAIMNMQDNSVQV R L E V K I 0 0 1 2 0 0 2 1 0 2 1 1 1 1 2 1 0 0 0 2 0 0 17 0 1901.9445 O75487;Q9Y625 O75487 302 318 GPC4;GPC6 Glypican-4;Secreted glypican-4;Glypican-6;Secreted glypican-6 yes no 2 0.0050552 75.89 By MS/MS 6.5 0.5 1 1 2 9080700 0 0 9080700 7681 265 7996 32661;32662 27507 27507 1 0 0 1369100 LEGQAQAEAK NFRLYQLLNLHYPPKLEGQAQAEAKAGEGT HYPPKLEGQAQAEAKAGEGTYALDSESCME K L E A K A 3 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 10 0 1043.5247 O00541 O00541 250 259 PES1 Pescadillo homolog yes yes 2 0.00039478 126.24 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 4 4 24340000 0 8866600 15474000 7682 127 7997 32663;32664;32665;32666;32667;32668;32669;32670 27508;27509 27509 2 0 3661900 2996800 LEGSTIYVGDPYCPPSDK QIFGLNKLFNWLHPRLEGSTIYVGDPYCPP STIYVGDPYCPPSDKEHISLEDHPDSGFYV R L E D K E 0 0 0 2 1 0 1 2 0 1 1 1 0 0 3 2 1 0 2 1 0 0 18 0 1996.9088 P12577 P12577 700 717 yes yes 2;3 0.00030147 97.214 By MS/MS By MS/MS By MS/MS 5.7 1.73 1 1 4 1 1 1 1 2 1 7 708620000 431730000 7888800 268990000 7683 539 7998 32671;32672;32673;32674;32675;32676;32677;32678;32679;32680 27510;27511;27512;27513;27514;27515;27516 27511 7 345870000 2033500 40734000 LEHEISHLK SETETKQRLSSQIEKLEHEISHLKKKLENE SSQIEKLEHEISHLKKKLENEVEQRHTLTR K L E L K K 0 0 0 0 0 0 2 0 2 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1104.5928 P12270 P12270 844 852 TPR Nucleoprotein TPR yes yes 2 0.00063684 128.61 By MS/MS 7 0 1 1 8329600 0 0 8329600 7684 536 7999 32681 27517 27517 1 0 0 1478000 LEHIDGVNLTVPVK GIPAASEGKIQAALKLEHIDGVNLTVPVKA KLEHIDGVNLTVPVKAPSRKDILEGVKKTL K L E V K A 0 0 1 1 0 0 1 1 1 1 2 1 0 0 1 0 1 0 0 3 0 0 14 0 1532.8562 Q6P087 Q6P087 192 205 RPUSD3 RNA pseudouridylate synthase domain-containing protein 3 yes yes 3 0.052905 40.941 By MS/MS By MS/MS 6 0 3 1 2 17467000 0 964960 16502000 7685 1484 8000 32682;32683;32684 27518;27519 27518 2 0 334040 2468900 LEIEHSVPK AIETFSGKVELQGKRLEIEHSVPKKQRSRK ELQGKRLEIEHSVPKKQRSRKIQIRNIPPQ R L E P K K 0 0 0 0 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 9 0 1050.571 Q9NZI8 Q9NZI8 68 76 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0021697 105.1 By MS/MS 3 0 1 1 4417100 0 4417100 0 7686 2104 8001 32685 27520 27520 1 0 1883000 0 LEILQQQLQVANEAR ALKQLEALEKEKAAKLEILQQQLQVANEAR LEILQQQLQVANEARDSAQTSVTQAQREKA K L E A R D 2 1 1 0 0 4 2 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 15 0 1751.953 Q14980 Q14980 617 631 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.3619E-149 290.61 By matching By MS/MS 1 0 3 1 2 46951000 1226800 0 45724000 7687 1327 8002 32686;32687;32688 27521;27522 27521 2 1226800 0 9852000 LEIYVVTAEGLRPVK TSAEDLNLLIAKNTRLEIYVVTAEGLRPVK LEIYVVTAEGLRPVKEVGMYGKIAVMELFR R L E V K E 1 1 0 0 0 0 2 1 0 1 2 1 0 0 1 0 1 0 1 3 0 0 15 1 1685.9716 Q16531 Q16531 39 53 DDB1 DNA damage-binding protein 1 yes yes 3 0.013172 57.794 By MS/MS 1.5 0.5 1 1 2 8649600 0 0 8649600 7688 1387 8003 32689;32690 27523 27523 1 0 0 1921700 LEKDDSTDFKK GSYSYLEERKPYSSRLEKDDSTDFKKLYEQ YSSRLEKDDSTDFKKLYEQILAENEKLKAQ R L E K K L 0 0 0 3 0 0 1 0 0 0 1 3 0 1 0 1 1 0 0 0 0 0 11 2 1324.6511 O14974 O14974 924 934 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes yes 3 0.06944 50.95 By MS/MS 2.5 0.5 1 1 2 1387300 0 1387300 0 7689 156 8004 32691;32692 27524 27524 1 0 619490 0 LEKEIETYHNLLEGGQEDFESSGAGK CQNQEYSLLLSIKMRLEKEIETYHNLLEGG LEGGQEDFESSGAGKIGLGGRGGSGGSYGR R L E G K I 1 0 1 1 0 1 6 4 1 1 3 2 0 1 0 2 1 0 1 0 0 0 26 1 2879.3461 P35527;CON__P35527 P35527 447 472 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 2.4488E-62 207.83 By MS/MS 5.8 2.32 2 2 2 2 2 10 188810000 188810000 0 0 + 7690 750 8005 32693;32694;32695;32696;32697;32698;32699;32700;32701;32702 27525;27526;27527;27528;27529;27530;27531;27532;27533 27530 9 147900000 0 0 LEKPLPENEEK KEDEKELVKLPVIVKLEKPLPENEEKKIIK VIVKLEKPLPENEEKKIIKEESDSFKENVK K L E E K K 0 0 1 0 0 0 4 0 0 0 2 2 0 0 2 0 0 0 0 0 0 0 11 1 1324.6874 Q96T23 Q96T23 295 305 RSF1 Remodeling and spacing factor 1 yes yes 3 0.04253 54.343 By matching By MS/MS By MS/MS 2.33 1.6 3 1 1 1 1 1 4 13626000 1495800 2737600 9392200 7691 1837 8006 32703;32704;32705;32706;32707;32708 27534;27535 27534 2 1495800 1338100 1768600 LELDALR QQEVEKLASENASMKLELDALRSKYEALQT ASENASMKLELDALRSKYEALQTFARTVAR K L E L R S 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 7 0 828.47052 O15525;O60675;Q9ULX9 O15525 102 108 MAFG;MAFK;MAFF Transcription factor MafG;Transcription factor MafK;Transcription factor MafF no no 2 0.013359 114.59 By MS/MS 7 0 1 1 24430000 0 0 24430000 7692 185;2196 8007 32709 27536 27536 1 0 0 4335000 LELEAYR ISTQYILDCVERNERLELEAYRLGPASAAD DCVERNERLELEAYRLGPASAADTGSEAKP R L E Y R L 1 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 7 0 892.46543 Q9NYB0 Q9NYB0 94 100 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 2 0.024814 97.071 By matching By MS/MS 4 0 2 1 1 8656200 2375600 0 6280600 7693 2096 8008 32710;32711 27537 27537 1 1853400 0 1025800 LELEQTYQAK EELRSQHDEQVRLYKLELEQTYQAKLDSAK VRLYKLELEQTYQAKLDSAKLSSDQNDKAA K L E A K L 1 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 1 0 0 0 10 0 1221.6241 Q03252 Q03252 276 285 LMNB2 Lamin-B2 yes yes 2 3.2916E-14 152.47 By matching By MS/MS By MS/MS 3.67 0.745 3 2 1 1 2 3 218940000 4530500 5510300 208890000 7694 1156 8009 32712;32713;32714;32715;32716;32717 27538;27539;27540;27541;27542 27538 5 5227200 1828700 38393000 LELFTSR TALQGLYYNKELNSKLELFTSRFKDRIVSM YNKELNSKLELFTSRFKDRIVSMTLDKEYD K L E S R F 0 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 1 0 0 0 0 0 7 0 864.47052 Q8N3U4;Q9UJ98 Q8N3U4 364 370 STAG2;STAG3 Cohesin subunit SA-2;Cohesin subunit SA-3 yes no 2 0.00082515 151.17 By MS/MS 2 0 1 1 12203000 0 0 12203000 7695 1603 8010 32718 27543 27543 1 0 0 2757700 LELLAAYEEVIR ______________________________ GHRLELLAAYEEVIREESAADWALYTYEDG R L E I R E 2 1 0 0 0 0 3 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1417.7817 Q16643 Q16643 11 22 DBN1 Drebrin yes yes 2 6.1607E-05 143.89 By MS/MS 2 0.816 1 1 1 3 19186000 0 0 19186000 7696 1395 8011 32719;32720;32721 27544 27544 1 0 0 4170700 LELLLQK EAERNKMIGKRANERLELLLQKRKELQENQ IGKRANERLELLLQKRKELQENQDEIENMM R L E Q K R 0 0 0 0 0 1 1 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 7 0 855.54295 Q8N3U4;Q8WVM7 Q8N3U4 264 270 STAG2;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.0044194 128.82 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 2 1 36546000 2051300 8842300 25652000 7697 1603 8012 32722;32723;32724;32725 27545;27546;27547 27547 3 2471600 4035700 5796900 LELQFPR PGGGSKTSLSFQDPKLELQFPRTPEGRRLG SLSFQDPKLELQFPRTPEGRRLGSLLPVLS K L E P R T 0 1 0 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 7 0 901.50215 P48681 P48681 331 337 NES Nestin yes yes 2 0.0094762 121.68 By MS/MS 1.5 0.5 1 1 2 1446800 0 1446800 0 7698 846 8013 32726;32727 27548 27548 1 0 692580 0 LELQGPR LNSCNKREIEGRAIRLELQGPRGSPNARSQ EIEGRAIRLELQGPRGSPNARSQPSKTLFV R L E P R G 0 1 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 811.4552 P19338 P19338 555 561 NCL Nucleolin yes yes 2 4.3532E-05 132.94 By MS/MS By MS/MS 3.67 2 1 2 2 2 2 5 4 201220000 0 126200000 75023000 7699 604 8014 32728;32729;32730;32731;32732;32733;32734;32735;32736 27549;27550;27551;27552;27553;27554;27555;27556 27555 7 0 54193000 14948000 LELQMNQNIK RTRQEEEKMHGRITKLELQMNQNIKEMKAE GRITKLELQMNQNIKEMKAEVNAGFTAVYE K L E I K E 0 0 2 0 0 2 1 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 10 0 1229.6438 Q8TBF8 Q8TBF8 310 319 FAM81A Protein FAM81A yes yes 2 0.003037 103.56 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 27206000 27206000 0 0 7700 1657 8015 32737;32738;32739 27557;27558;27559 27558 3 21470000 0 0 LELSENR LISVSNLPKLPKLKKLELSENRIFGGLDML PKLPKLKKLELSENRIFGGLDMLAEKLPNL K L E N R I 0 1 1 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 859.43995 Q92688 Q92688 69 75 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2 0.013384 114.54 By MS/MS 6.5 0.5 1 1 2 15185000 0 0 15185000 7701 1716 8016 32740;32741 27560 27560 1 0 0 2393700 LELSVHLQPITR KMGKTIHKYVHLFPKLELSVHLQPITRSTL FPKLELSVHLQPITRSTLKVELTITPDFQW K L E T R S 0 1 0 0 0 1 1 0 1 1 3 0 0 0 1 1 1 0 0 1 0 0 12 0 1404.8089 O75643 O75643 1184 1195 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 2.7114E-06 162.36 By MS/MS 1.33 0.471 2 1 3 52372000 0 0 52372000 7702 277 8017 32742;32743;32744 27561;27562 27562 2 0 0 11304000 LELSVLYK IQQEIAVQNPLVSERLELSVLYKEYAEDDN NPLVSERLELSVLYKEYAEDDNIYQQKIKD R L E Y K E 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 8 0 963.56408 Q96FW1 Q96FW1 52 59 OTUB1 Ubiquitin thioesterase OTUB1 yes yes 2 0.025235 80.229 By matching By MS/MS 6 0 2 1 1 7964900 0 4874000 3090900 7703 1784 8018 32745;32746 27563 27563 1 0 1687200 462430 LEMEGITVK PELAKMSQEEVNVFRLEMEGITVKGKGCPK EVNVFRLEMEGITVKGKGCPKPIKSWVQCG R L E V K G 0 0 0 0 0 0 2 1 0 1 1 1 1 0 0 0 1 0 0 1 0 0 9 0 1018.5369 Q7L014 Q7L014 355 363 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.047498 72.23 By MS/MS 1.5 0.5 1 1 2 12771000 0 0 12771000 7704 1520 8019 32747;32748 27564 27564 1 0 0 2873600 LEMEMEAAR QQDQVDRNIKEAREKLEMEMEAARHEHQVM KEAREKLEMEMEAARHEHQVMLMRQDLMRR K L E A R H 2 1 0 0 0 0 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 9 0 1078.4787 Q15233 Q15233 296 304 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.0001253 142.19 By MS/MS 2.5 1.12 1 1 1 1 4 48899000 0 0 48899000 7705 1351 8020 32749;32750;32751;32752 27565 27565 1 0 0 8376000 LEMNLGLQK LWEYLLELLRARRQRLEMNLGLQKIFQEML RARRQRLEMNLGLQKIFQEMLYIMDWMDEM R L E Q K I 0 0 1 0 0 1 1 1 0 0 3 1 1 0 0 0 0 0 0 0 0 0 9 0 1044.5638 Q01082 Q01082 524 532 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.0078753 91.9 By MS/MS 1 0 1 1 30729000 0 0 30729000 7706 1128 8021 32753 27566 27566 1 0 0 6621000 LEMYVLNPVK TIDPVILFQKMGVGKLEMYVLNPVKSSKEM MGVGKLEMYVLNPVKSSKEMQYFMQQWTGT K L E V K S 0 0 1 0 0 0 1 0 0 0 2 1 1 0 1 0 0 0 1 2 0 0 10 0 1204.6526 P46821 P46821 420 429 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.061054 69.954 By MS/MS By matching 1.5 0.5 1 1 1 1 7415700 0 3632700 3783000 7707 834 8022 32754;32755 27567 27567 1 0 1775600 854890 LENEIQTYR CQNTEYQQLLDIKIRLENEIQTYRSLLEGE LDIKIRLENEIQTYRSLLEGEGSSGGGGRG R L E Y R S 0 1 1 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1164.5775 P13645;CON__P13645;CON__P02535-1 P13645 442 450 KRT10 Keratin, type I cytoskeletal 10 no no 2 4.5285E-66 230.54 By MS/MS By MS/MS By MS/MS 5.69 2.87 3 3 4 3 4 3 4 3 4 4 17 8 10 10095000000 7168100000 173340000 2753700000 + 7708 56;36 8023 32756;32757;32758;32759;32760;32761;32762;32763;32764;32765;32766;32767;32768;32769;32770;32771;32772;32773;32774;32775;32776;32777;32778;32779;32780;32781;32782;32783;32784;32785;32786;32787;32788;32789;32790 27568;27569;27570;27571;27572;27573;27574;27575;27576;27577;27578;27579;27580;27581;27582;27583;27584;27585;27586;27587;27588;27589;27590;27591;27592;27593;27594;27595;27596;27597;27598;27599;27600;27601;27602 27600 34 6730600000 189480000 1206000000 LENLFEALNNK GREGFLKGEDGEMVKLENLFEALNNKNCQA EMVKLENLFEALNNKNCQALRAKPKVYIIQ K L E N K N 1 0 3 0 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 11 0 1303.6772 P31944 P31944 105 115 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 3.6383E-67 185.6 By MS/MS By MS/MS 5.45 2.68 1 2 2 1 1 1 1 1 1 7 4 68701000 49728000 0 18973000 7709 723 8024 32791;32792;32793;32794;32795;32796;32797;32798;32799;32800;32801 27603;27604;27605;27606;27607;27608;27609;27610;27611;27612 27606 10 41808000 0 4728200 LENLGIPEEELLR ECKTVALKRRKASSRLENLGIPEEELLRQQ SRLENLGIPEEELLRQQQELFAKARQQQAE R L E L R Q 0 1 1 0 0 0 4 1 0 1 4 0 0 0 1 0 0 0 0 0 0 0 13 0 1523.8195 Q01658 Q01658 108 120 DR1 Protein Dr1 yes yes 2 0.00044463 122.69 By matching By MS/MS 7.75 0.829 2 1 1 1 3 79176000 0 1941900 77235000 7710 1136 8025 32802;32803;32804;32805 27613 27613 1 0 1115000 13039000 LEPEEQNRPNER DSSRSEERKSHKIPKLEPEEQNRPNERVDT IPKLEPEEQNRPNERVDTVSEKPREEPVLK K L E E R V 0 2 2 0 0 1 4 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 12 1 1509.7172 Q9BZ95 Q9BZ95 219 230 WHSC1L1 Histone-lysine N-methyltransferase NSD3 yes yes 3 0.0055696 81.92 By matching By MS/MS 2.5 0.5 1 1 1 1 5619600 0 1056400 4563200 7711 1939 8026 32806;32807 27614 27614 1 0 475710 885050 LEPGGGAEAQAVR DVRMTSPSRRPIPCKLEPGGGAEAQAVRYM CKLEPGGGAEAQAVRYMPPEEGPYKVDITY K L E V R Y 3 1 0 0 0 1 2 3 0 0 1 0 0 0 1 0 0 0 0 1 0 0 13 0 1253.6364 Q14315 Q14315 1015 1027 FLNC Filamin-C yes yes 2 0.017112 80.763 By MS/MS 1 0 1 1 14460000 0 14460000 0 7712 1298 8027 32808 27615 27615 1 0 7068000 0 LEPNAQAQMYR GIIQTKALQVGCLLRLEPNAQAQMYRLTLR CLLRLEPNAQAQMYRLTLRTSKEPVSRHLC R L E Y R L 2 1 1 0 0 2 1 0 0 0 1 0 1 0 1 0 0 0 1 0 0 0 11 0 1319.6292 O95782 O95782 945 955 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.0013236 111.04 By MS/MS 2 0 1 1 3948300 0 3948300 0 7713 339 8028 32809 27616 27616 1 0 1778000 0 LEPSTSTDQPVTPEPTSQATR SSGKTPETLVPTAPKLEPSTSTDQPVTPEP TDQPVTPEPTSQATRGRTNRSSVKTPETVV K L E T R G 1 1 0 1 0 2 2 0 0 0 1 0 0 0 4 3 5 0 0 1 0 0 21 0 2241.0761 Q14676 Q14676 1414 1434 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 1.9688E-22 183.23 By MS/MS 1 0 1 1 15163000 0 0 15163000 7714 1310 8029 32810 27617 27617 1 0 0 3267200 LEPYADQLR VSQKIGDNLRELQQRLEPYADQLRTQVNTQ RELQQRLEPYADQLRTQVNTQAEQLRRQLT R L E L R T 1 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 9 0 1103.5611 P06727 P06727 135 143 APOA4 Apolipoprotein A-IV yes yes 2 0.00072238 113.71 By MS/MS 9 0 1 1 12981000 12981000 0 0 7715 446 8030 32811 27618 27618 1 7286500 0 0 LEQEIATYR QQNQEYKILLDVKTRLEQEIATYRRLLEGE LDVKTRLEQEIATYRRLLEGEDAHLSSSQF R L E Y R R 1 1 0 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1121.5717 CON__P02533;P02533;CON__A2A4G1;CON__Q61782;CON__Q9D312;CON__Q8N1A0;Q8N1A0;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;Q04695;CON__Q04695;CON__Q6IFX2;CON__P08730-1;CON__P08727;P08727 CON__P02533 408 416 KRT14;KRT222;KRT16;KRT13;KRT17;KRT19 Keratin, type I cytoskeletal 14;Keratin-like protein KRT222;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 1.258E-31 197.3 By MS/MS By MS/MS By MS/MS 5.42 2.64 2 1 2 2 3 2 2 2 2 1 9 1 9 1334900000 819740000 54957000 460160000 + 7716 35;73;53;51;91;57;548;52 8031 32812;32813;32814;32815;32816;32817;32818;32819;32820;32821;32822;32823;32824;32825;32826;32827;32828;32829;32830 27619;27620;27621;27622;27623;27624;27625;27626;27627;27628;27629;27630;27631;27632;27633;27634;27635 27624 17 761680000 14166000 121640000 LEQELFSGGNTGINFEK SDEDDWSKPLPPSERLEQELFSGGNTGINF QELFSGGNTGINFEKYDDIPVEATGNNCPP R L E E K Y 0 0 2 0 0 1 3 3 0 1 2 1 0 2 0 1 1 0 0 0 0 0 17 0 1881.9109 O00571;O15523 O00571 146 162 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 2.2935E-48 225.63 By MS/MS By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 3 1 101970000 9707000 10225000 82042000 7717 131 8032 32831;32832;32833;32834;32835 27636;27637;27638;27639;27640 27640 5 11200000 4333500 15912000 LEQEVAR ATVAREEQERLEELRLEQEVARQGLEGSLR QERLEELRLEQEVARQGLEGSLRVAEQAQE R L E A R Q 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 7 0 843.44503 Q5TZA2 Q5TZA2 795 801 CROCC Rootletin yes yes 2 0.060859 74.717 By matching By MS/MS 7.25 0.829 1 1 2 3 1 50252000 0 9992900 40259000 7718 1458 8033 32836;32837;32838;32839 27641 27641 1 0 4558400 6172000 LEQIAAEQK ELTQIKSNIDALLSRLEQIAAEQKANPDGK DALLSRLEQIAAEQKANPDGKKKGDGGGAG R L E Q K A 2 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 9 0 1028.5502 Q9UKM9 Q9UKM9 208 216 RALY RNA-binding protein Raly yes yes 2 1.94E-07 160.11 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 81411000 0 54525000 26886000 7719 2181 8034 32840;32841;32842 27642;27643 27642 2 0 18524000 4022500 LEQLFQDEVAK SLLQRERFIEQEKAKLEQLFQDEVAKAQQL EKAKLEQLFQDEVAKAQQLREEQQRQQQQM K L E A K A 1 0 0 1 0 2 2 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 11 0 1318.6769 Q15149 Q15149 2653 2663 PLEC Plectin yes yes 2 0.00028113 133.83 By matching By MS/MS 1 0 2 1 1 9027600 3081700 5945800 0 7720 1348 8035 32843;32844 27644 27644 1 3081700 2906200 0 LEQMPSKEDAIEHFMK FRSWGRVGTVIGSNKLEQMPSKEDAIEHFM EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF K L E M K L 1 0 0 1 0 1 3 0 1 1 1 2 2 1 1 1 0 0 0 0 0 0 16 1 1931.9121 P09874 P09874 601 616 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 9.279E-18 191.06 By MS/MS By MS/MS 2.35 1.07 6 10 6 3 1 7 19 1035000000 0 43401000 991620000 7721 492 8036;8037 32845;32846;32847;32848;32849;32850;32851;32852;32853;32854;32855;32856;32857;32858;32859;32860;32861;32862;32863;32864;32865;32866;32867;32868;32869;32870 27645;27646;27647;27648;27649;27650;27651;27652;27653;27654;27655;27656;27657;27658;27659;27660;27661 27658 207;208 17 0 19580000 219490000 LEQQVPVNQVFGQDEMIDVIGVTK NGGTVAEKLDWARERLEQQVPVNQVFGQDE VFGQDEMIDVIGVTKGKGYKGVTSRWHTKK R L E T K G 0 0 1 2 0 4 2 2 0 2 1 1 1 1 1 0 1 0 0 5 0 0 24 0 2685.3684 P39023 P39023 201 224 RPL3 60S ribosomal protein L3 yes yes 2;3 1.2616E-21 153.72 By MS/MS By MS/MS 4.78 1.75 1 1 1 2 3 1 3 6 59122000 0 34584000 24538000 7722 778 8038 32871;32872;32873;32874;32875;32876;32877;32878;32879 27662;27663;27664;27665;27666;27667 27667 6 0 9524600 3964200 LESEGSPETLTNLR MELRAKEEERLNKLRLESEGSPETLTNLRK RLESEGSPETLTNLRKGYLFMYNLVQFLGF R L E L R K 0 1 1 0 0 0 3 1 0 0 3 0 0 0 1 2 2 0 0 0 0 0 14 0 1544.7682 Q9P035 Q9P035 133 146 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 2 0.0004604 120.77 By MS/MS By MS/MS 1 0 2 1 1 18671000 0 3920200 14751000 7723 2112 8039 32880;32881 27668;27669 27668 1 0 1916100 3178300 LESEHPDQAQAILSR AIEAKLSDLQKEAEKLESEHPDQAQAILSR LESEHPDQAQAILSRLAEISDVWEEMKTTL K L E S R L 2 1 0 1 0 2 2 0 1 1 2 0 0 0 1 2 0 0 0 0 0 0 15 0 1692.8431 Q01082 Q01082 1022 1036 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 6.1308E-05 134.25 By MS/MS 1 0 1 1 9280600 0 9280600 0 7724 1128 8040 32882 27670 27670 1 0 4536200 0 LESEMEDAYHEHQANLLR QREQVEKNMKDAKDKLESEMEDAYHEHQAN EMEDAYHEHQANLLRQDLMRRQEELRRMEE K L E L R Q 2 1 1 1 0 1 4 0 2 0 3 0 1 0 0 1 0 0 1 0 0 0 18 0 2183.9906 P23246 P23246 519 536 SFPQ Splicing factor, proline- and glutamine-rich yes yes 4 0.00022012 84.41 By MS/MS 2 0.816 1 1 1 3 20087000 0 0 20087000 7725 638 8041 32883;32884;32885 27671 27671 1 0 0 4427100 LESENDEYER QANPNSEEIWLAAVKLESENDEYERARRLL LAAVKLESENDEYERARRLLAKARSSAPTA K L E E R A 0 1 1 1 0 0 4 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 10 0 1282.5313 O94906 O94906 651 660 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00049537 135.71 By MS/MS 2 0 1 1 1646100 0 1646100 0 7726 305 8042 32886 27672 27672 1 0 741240 0 LESFLHDSWR AKKEQKKGKGLRFKRLESFLHDSWRQKRDK LRFKRLESFLHDSWRQKRDKVRLRRLEVKP R L E W R Q 0 1 0 1 0 0 1 0 1 0 2 0 0 1 0 2 0 1 0 0 0 0 10 0 1288.62 Q6DKI1 Q6DKI1 61 70 RPL7L1 60S ribosomal protein L7-like 1 yes yes 2;3 1.9691E-05 151.97 By matching By MS/MS By MS/MS 6.12 0.599 1 5 2 2 2 4 70505000 4463800 4766100 61275000 7727 1471 8043 32887;32888;32889;32890;32891;32892;32893;32894 27673;27674;27675;27676 27675 4 4351100 1649900 9827300 LESFMETGK EGGPAHKREYTTICRLESFMETGKGASKKQ YTTICRLESFMETGKGASKKQAKRNAAEKF R L E G K G 0 0 0 0 0 0 2 1 0 0 1 1 1 1 0 1 1 0 0 0 0 0 9 0 1040.4848 O75569 O75569 165 173 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 2 0.00299 101.64 By matching By MS/MS 6.33 0.471 2 1 1 2 14875000 0 1870100 13005000 7728 273 8044 32895;32896;32897 27677 27677 1 0 647370 1994900 LESGMQNMSIHTK EIATYRKLLEGEESRLESGMQNMSIHTKTT SRLESGMQNMSIHTKTTSGYAGGLSSAYGG R L E T K T 0 0 1 0 0 1 1 1 1 1 1 1 2 0 0 2 1 0 0 0 0 0 13 0 1474.6908 CON__P05787;P05787;CON__REFSEQ:XP_092267 CON__P05787 402 414 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 2.6498E-72 244.24 By MS/MS By MS/MS By MS/MS 4.1 1.78 4 4 8 16 8 2 4 1 1 4 16 28 2917900000 53185000 967980000 1896700000 + 7729 49 8045;8046 32898;32899;32900;32901;32902;32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915;32916;32917;32918;32919;32920;32921;32922;32923;32924;32925;32926;32927;32928;32929;32930;32931;32932;32933;32934;32935;32936;32937;32938;32939;32940;32941;32942;32943;32944;32945 27678;27679;27680;27681;27682;27683;27684;27685;27686;27687;27688;27689;27690;27691;27692;27693;27694;27695;27696;27697;27698;27699;27700;27701;27702;27703;27704;27705;27706;27707;27708;27709;27710 27692 29;30 33 41644000 314990000 319180000 LESLSAATTFEPLEPVKDTDIQGFLK LLGSRGLDISHISQRLESLSAATTFEPLEP PLEPVKDTDIQGFLKNEKDNALLSAIEESR R L E L K N 2 0 0 2 0 1 3 1 0 1 4 2 0 2 2 2 3 0 0 1 0 0 26 1 2848.4746 Q8N1F7 Q8N1F7 78 103 NUP93 Nuclear pore complex protein Nup93 yes yes 3 6.2835E-06 71.696 By matching By MS/MS 3 0 2 1 1 14813000 1519800 0 13293000 7730 1599 8047 32946;32947 27711 27711 1 1753500 0 2578200 LESLSYQLSGLQK AASAAREELKEARMRLESLSYQLSGLQKQA MRLESLSYQLSGLQKQASAAEDRIRELEEA R L E Q K Q 0 0 0 0 0 2 1 1 0 0 4 1 0 0 0 3 0 0 1 0 0 0 13 0 1464.7824 Q03252 Q03252 314 326 LMNB2 Lamin-B2 yes yes 2;3 3.785E-11 174.98 By MS/MS By MS/MS By MS/MS 3.2 0.4 4 1 1 2 2 177510000 6758400 65329000 105420000 7731 1156 8048 32948;32949;32950;32951;32952 27712;27713;27714;27715 27714 4 7797700 27850000 20428000 LESTYEIR LTLHDYLLRNFNLFRLESTYEIRQDIEDSV RNFNLFRLESTYEIRQDIEDSVSRMKPWQS R L E I R Q 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 8 0 1009.508 O60306 O60306 475 482 AQR Intron-binding protein aquarius yes yes 2 0.02996 77.923 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 10756000 0 6339000 4416900 7732 225 8049 32953;32954 27716;27717 27716 2 0 2854600 951700 LETAVNLAWTAGNSNTR GTEFGGSIYQKVNKKLETAVNLAWTAGNSN TAVNLAWTAGNSNTRFGIAAKYQIDPDACF K L E T R F 3 1 3 0 0 0 1 1 0 0 2 0 0 0 0 1 3 1 0 1 0 0 17 0 1816.9068 P21796 P21796 202 218 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 0.021931 61.212 By MS/MS 6 0 1 1 30119000 0 0 30119000 7733 625 8050 32955 27718 27718 1 0 0 4506100 LETHMTPEMFR PGFCFHLCSRARFERLETHMTPEMFRTPLH RFERLETHMTPEMFRTPLHEIALSIKLLRL R L E F R T 0 1 0 0 0 0 2 0 1 0 1 0 2 1 1 0 2 0 0 0 0 0 11 0 1390.6373 Q08211 Q08211 785 795 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.2023E-09 168.83 By MS/MS By MS/MS 2.27 0.929 3 7 3 2 6 9 309570000 0 80511000 229060000 7734 1182 8051;8052 32956;32957;32958;32959;32960;32961;32962;32963;32964;32965;32966;32967;32968;32969;32970 27719;27720;27721;27722;27723;27724;27725;27726;27727;27728;27729;27730;27731 27726 561 13 0 36163000 50263000 LETLGSASTSTPGR RDLEMSKKVRRSYSRLETLGSASTSTPGRR RLETLGSASTSTPGRRSCFGFEGLLGAEDL R L E G R R 1 1 0 0 0 0 1 2 0 0 2 0 0 0 1 3 3 0 0 0 0 0 14 0 1375.6943 Q96FF9 Q96FF9 149 162 CDCA5 Sororin yes yes 2 3.7279E-12 184.24 By matching By MS/MS 6.33 0.471 2 1 1 2 21039000 0 2496800 18542000 7735 1782 8053 32971;32972;32973 27732;27733 27732 2 0 864310 3005600 LETLTNQFSDSK ELSRKDTELLALQTKLETLTNQFSDSKQHI QTKLETLTNQFSDSKQHIEVLKESLTAKEQ K L E S K Q 0 0 1 1 0 1 1 0 0 0 2 1 0 1 0 2 2 0 0 0 0 0 12 0 1381.6725 Q8IUD2 Q8IUD2 489 500 ERC1 ELKS/Rab6-interacting/CAST family member 1 yes yes 2 0.044634 74.533 By MS/MS 2 0.816 1 1 1 3 10895000 0 0 10895000 7736 1565 8054 32974;32975;32976 27734 27734 1 0 0 2369600 LETSEFFELTSEEK AAFEDNEVQDEFLEKLETSEFFELTSEEKL KLETSEFFELTSEEKLQILTALCHRILMTY K L E E K L 0 0 0 0 0 0 5 0 0 0 2 1 0 2 0 2 2 0 0 0 0 0 14 0 1687.7829 Q9UIG0 Q9UIG0 732 745 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 5.1084E-05 159.94 By MS/MS 1.5 0.5 1 1 2 10072000 0 0 10072000 7737 2164 8055 32977;32978 27735;27736 27735 2 0 0 2222900 LETVGSIFSR ______________________________ MAGSRLETVGSIFSRTRDLVRAGVLKEKPL R L E S R T 0 1 0 0 0 0 1 1 0 1 1 0 0 1 0 2 1 0 0 1 0 0 10 0 1107.5924 Q9Y3D9 Q9Y3D9 6 15 MRPS23 28S ribosomal protein S23, mitochondrial yes yes 2 0.0001182 145.17 By MS/MS By MS/MS 7 0 2 1 1 45606000 0 20557000 25050000 7738 2272 8056 32979;32980 27737;27738 27737 2 0 11804000 4444900 LETYENAR ECCPTSVELWLALARLETYENARKVLNKAR LWLALARLETYENARKVLNKARENIPTDRH R L E A R K 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 8 0 994.47197 O94906 O94906 443 450 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.067477 75.243 By MS/MS 3 0 1 1 3720800 0 3720800 0 7739 305 8057 32981 27739 27739 0 0 1586200 0 LEVAPISDIIAIK ASAFGKNLLPRVAAKLEVAPISDIIAIKSP AKLEVAPISDIIAIKSPDTFVRTIYAGNAL K L E I K S 2 0 0 1 0 0 1 0 0 4 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1380.8228 P13804 P13804 127 139 ETFA Electron transfer flavoprotein subunit alpha, mitochondrial yes yes 2 0.0076248 93.058 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 13832000 0 2500800 11331000 7740 552 8058 32982;32983;32984 27740;27741 27740 2 0 865700 1717200 LEVDVIQER ALQKHVESMRTAVEKLEVDVIQERSRNTVL RTAVEKLEVDVIQERSRNTVLQQHLETLRQ K L E E R S 0 1 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 2 0 0 9 0 1099.5873 Q9NP66 Q9NP66 267 275 HMG20A High mobility group protein 20A yes yes 2 5.414E-11 166.52 By MS/MS 5 0 1 1 9335700 0 0 9335700 7741 2018 8059 32985 27742 27742 1 0 0 1302200 LEVEANNAFDQYR PPLEDGAMPSARLRKLEVEANNAFDQYRDL RKLEVEANNAFDQYRDLYFEGGVSSVYLWD K L E Y R D 2 1 2 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 13 0 1567.7267 P47756 P47756 96 108 CAPZB F-actin-capping protein subunit beta yes yes 2 0.024532 69.721 By MS/MS By matching 5.8 1.17 1 1 1 2 4 1 29181000 0 26910000 2271000 7742 837 8060 32986;32987;32988;32989;32990 27743 27743 0 0 8940400 402980 LEVKPHALELPDK HDSWRQKRDKVRLRRLEVKPHALELPDKHS RRLEVKPHALELPDKHSLAFVVRIERIDGV R L E D K H 1 0 0 1 0 0 2 0 1 0 3 2 0 0 2 0 0 0 0 1 0 0 13 1 1487.8348 Q6DKI1 Q6DKI1 81 93 RPL7L1 60S ribosomal protein L7-like 1 yes yes 3 0.0056228 76.868 By MS/MS 6.5 0.5 1 1 2 20276000 0 0 20276000 7743 1471 8061 32991;32992 27744;27745 27744 2 0 0 3262800 LEVNEAELLR TVRGSLERQAGQIKKLEVNEAELLRRRNFK GQIKKLEVNEAELLRRRNFKVMIYQDEVKL K L E L R R 1 1 1 0 0 0 3 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1184.6401 Q6NZI2 Q6NZI2 138 147 PTRF Polymerase I and transcript release factor yes yes 2 0.0034665 102.07 By MS/MS 4 0 1 1 3207000 0 0 3207000 7744 1483 8062 32993 27746 27746 1 0 0 523800 LEVNLQAMK ELEDELQATEDAKLRLEVNLQAMKAQFERD EDAKLRLEVNLQAMKAQFERDLQGRDEQSE R L E M K A 1 0 1 0 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 1044.5638 P35579 P35579 1558 1566 MYH9 Myosin-9 yes yes 2 0.00043447 137.18 By MS/MS By MS/MS 1.62 0.696 4 3 1 6 2 259920000 0 213120000 46792000 7745 752 8063;8064 32994;32995;32996;32997;32998;32999;33000;33001 27747;27748;27749;27750;27751;27752 27748 352 6 0 103320000 10154000 LEVQAEEER VATERQKRRQEIEQKLEVQAEEERKQVENE QEIEQKLEVQAEEERKQVENERRELFEERR K L E E R K 1 1 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1101.5302 Q9H307 Q9H307 177 185 PNN Pinin yes yes 2 1.6545E-23 190.26 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 57516000 0 5152100 52364000 7746 1978 8065 33002;33003;33004 27753;27754;27755 27755 3 0 2320100 11672000 LEVQAEEERK VATERQKRRQEIEQKLEVQAEEERKQVENE EIEQKLEVQAEEERKQVENERRELFEERRA K L E R K Q 1 1 0 0 0 1 4 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 10 1 1229.6252 Q9H307 Q9H307 177 186 PNN Pinin yes yes 3 0.0072701 74.944 By MS/MS By MS/MS 2 0 2 1 1 6186200 0 2267100 3919000 7747 1978 8066 33005;33006 27756;27757 27757 2 0 1020900 885620 LEVQATDR SKKKAVQRLEEQLMKLEVQATDREENKQIA LEEQLMKLEVQATDREENKQIALGTSKLNY K L E D R E 1 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 930.47706 P11387 P11387 701 708 TOP1 DNA topoisomerase 1 yes yes 2 0.0023559 108.74 By MS/MS 3 0 1 1 14732000 0 0 14732000 7748 523 8067 33007 27758 27758 1 0 0 2857300 LEVQATDREENK SKKKAVQRLEEQLMKLEVQATDREENKQIA LMKLEVQATDREENKQIALGTSKLNYLDPR K L E N K Q 1 1 1 1 0 1 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 1 1430.7001 P11387 P11387 701 712 TOP1 DNA topoisomerase 1 yes yes 2;3 1.1114E-44 221.91 By MS/MS By MS/MS 3.28 1.79 3 4 5 1 2 2 1 5 13 316460000 0 63595000 252860000 7749 523 8068 33008;33009;33010;33011;33012;33013;33014;33015;33016;33017;33018;33019;33020;33021;33022;33023;33024;33025 27759;27760;27761;27762;27763;27764;27765;27766;27767;27768;27769;27770;27771;27772;27773 27770 15 0 28352000 52649000 LEVQATDREENKQIALGTSK SKKKAVQRLEEQLMKLEVQATDREENKQIA TDREENKQIALGTSKLNYLDPRITVAWCKK K L E S K L 2 1 1 1 0 2 3 1 0 1 2 2 0 0 0 1 2 0 0 1 0 0 20 2 2229.1601 P11387 P11387 701 720 TOP1 DNA topoisomerase 1 yes yes 4 1.4322E-07 101.67 By MS/MS 2 0 1 1 20903000 0 20903000 0 7750 523 8069 33026 27774 27774 1 0 9412900 0 LEVSMVKPTPGLTPR KRSSRANTVTPAVGRLEVSMVKPTPGLTPR LEVSMVKPTPGLTPRFDSRVFKTPGLRTPA R L E P R F 0 1 0 0 0 0 1 1 0 0 2 1 1 0 3 1 2 0 0 2 0 0 15 1 1623.9018 Q53HL2 Q53HL2 177 191 CDCA8 Borealin yes yes 2;3 0.0044391 106.49 By MS/MS 6 0 2 2 42729000 0 0 42729000 7751 1429 8070 33027;33028 27775;27776 27776 2 0 0 6392700 LEWFSTLFPR CVMTIGEMLRSFLTKLEWFSTLFPRIPVPV SFLTKLEWFSTLFPRIPVPVQKNIDQQIKT K L E P R I 0 1 0 0 0 0 1 0 0 0 2 0 0 2 1 1 1 1 0 0 0 0 10 0 1294.671 Q5VTL8 Q5VTL8 211 220 PRPF38B Pre-mRNA-splicing factor 38B yes yes 2 0.00013341 144.12 By MS/MS 3 0 1 1 4600800 0 0 4600800 7752 1461 8071 33029 27777 27777 1 0 0 892340 LEWVQDNIR RSSAPTARVFMKSVKLEWVQDNIRAAQDLC FMKSVKLEWVQDNIRAAQDLCEEALRHYED K L E I R A 0 1 1 1 0 1 1 0 0 1 1 0 0 0 0 0 0 1 0 1 0 0 9 0 1171.5986 O94906 O94906 684 692 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 4.9288E-11 167.24 By MS/MS 2 0.816 1 1 1 3 32424000 0 0 32424000 7753 305 8072 33030;33031;33032 27778;27779 27778 2 0 0 7071200 LEYDDLRR TKEHLMLEEELRNLRLEYDDLRRGRSEADS EELRNLRLEYDDLRRGRSEADSDKNATILE R L E R R G 0 2 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 1 1078.5407 P15924 P15924 1729 1736 DSP Desmoplakin yes yes 2 0.027021 116.9 By MS/MS 1 0 1 1 9034700 0 0 9034700 7754 572 8073 33033 27780 27780 0 0 0 1946700 LEYGDNAEK DRQEAIDWLLGLAVRLEYGDNAEKYKDLVP LGLAVRLEYGDNAEKYKDLVPDNSKTADNA R L E E K Y 1 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1037.4666 Q9Y224 Q9Y224 90 98 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.009997 88.819 By matching By MS/MS 6.67 0.471 1 2 1 2 19828000 0 1121800 18706000 7755 2227 8074 33034;33035;33036 27781;27782 27781 2 0 644150 3226100 LEYNYNSHNVYIMADK KGIDFKEDGNILGHKLEYNYNSHNVYIMAD EYNYNSHNVYIMADKQKNGIKVNFKIRHNI K L E D K Q 1 0 3 1 0 0 1 0 1 1 1 1 1 0 0 1 0 0 3 1 0 0 16 0 1972.8989 CON__Q9U6Y5 CON__Q9U6Y5 141 156 yes yes 2;3 1.0798E-35 212.11 By MS/MS By MS/MS By MS/MS 5.55 1.76 1 3 4 9 5 4 3 2 2 8 21 1813400000 53653000 420300000 1339400000 + 7756 101 8075;8076 33037;33038;33039;33040;33041;33042;33043;33044;33045;33046;33047;33048;33049;33050;33051;33052;33053;33054;33055;33056;33057;33058;33059;33060;33061;33062;33063;33064;33065;33066;33067 27783;27784;27785;27786;27787;27788;27789;27790;27791;27792;27793;27794;27795;27796;27797;27798;27799;27800;27801;27802;27803;27804;27805;27806;27807;27808;27809 27788 63 27 42983000 114660000 207040000 LEYNYNSHNVYIMADKQK KGIDFKEDGNILGHKLEYNYNSHNVYIMAD NYNSHNVYIMADKQKNGIKVNFKIRHNIED K L E Q K N 1 0 3 1 0 1 1 0 1 1 1 2 1 0 0 1 0 0 3 1 0 0 18 1 2229.0525 CON__Q9U6Y5 CON__Q9U6Y5 141 158 yes yes 3;4 3.7212E-06 105.77 By MS/MS 5.8 0.748 2 2 1 5 63490000 0 63490000 0 + 7757 101 8077 33068;33069;33070;33071;33072 27810;27811 27810 2 0 18498000 0 LFAAELGR QKTLFPLRSIDDVVRLFAAELGREEPDLVL SIDDVVRLFAAELGREEPDLVLLSLVLGFV R L F G R E 2 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 875.4865 O00255 O00255 22 29 MEN1 Menin yes yes 2 0.0025745 108 By MS/MS 3 0 1 1 8357100 0 0 8357100 7758 113 8078 33073 27812 27812 1 0 0 1620900 LFADAVQELLPQYK ELVDSICENARRYAKLFADAVQELLPQYKE KLFADAVQELLPQYKEREVVNKDVLDVYIE K L F Y K E 2 0 0 1 0 2 1 0 0 0 3 1 0 1 1 0 0 0 1 1 0 0 14 0 1633.8716 P33993 P33993 76 89 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.0019168 103.31 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 15074000 0 5670200 9403500 7759 733 8079 33074;33075;33076 27813;27814;27815 27813 3 0 2474400 1823800 LFALVLTPTR FALPILNALLETPQRLFALVLTPTRELAFQ ETPQRLFALVLTPTRELAFQISEQFEALGS R L F T R E 1 1 0 0 0 0 0 0 0 0 3 0 0 1 1 0 2 0 0 1 0 0 10 0 1129.6859 Q9H0S4 Q9H0S4 93 102 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 4.4104E-09 121.05 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 10735000 0 10735000 0 7760 1964 8080 33077;33078;33079 27816;27817;27818;27819 27819 4 0 2963900 0 LFDFPGR GHAEQKDEMVPRLVKLFDFPGRGASQIYAG EMVPRLVKLFDFPGRGASQIYAGYTCSFAV K L F G R G 0 1 0 1 0 0 0 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 7 0 850.43374 Q9P258 Q9P258 378 384 RCC2 Protein RCC2 yes yes 2 0.0030653 141.55 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 34915000 1108500 7261900 26545000 7761 2120 8081 33080;33081;33082;33083 27820;27821;27822;27823;27824 27823 5 864850 2410000 4564500 LFDFVNAK TQYTFSSIEREEYGKLFDFVNAKKLNIKNR EREEYGKLFDFVNAKKLNIKNRGLKEGMNP K L F A K K 1 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 952.50182 Q08945 Q08945 414 421 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.0002678 134.44 By MS/MS By MS/MS 3 1.31 1 2 1 2 1 2 5 127870000 0 17354000 110520000 7762 1186 8082 33084;33085;33086;33087;33088;33089;33090 27825;27826;27827;27828;27829 27827 5 0 6522400 21168000 LFDLIQSELYVRPDDVHVNIR KEQLLDCEGEDGWNKLFDLIQSELYVRPDD SELYVRPDDVHVNIRLVEVYRSTKRLKDAV K L F I R L 0 2 1 3 0 1 1 0 1 2 3 0 0 1 1 1 0 0 1 3 0 0 21 1 2540.3387 A6NKT7;Q7Z3J3;O14715;Q99666;P49792 P49792 150 170 RGPD3;RGPD4;RGPD8;RGPD5;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;E3 SUMO-protein ligase RanBP2 no no 4 1.1211E-11 117.37 By MS/MS 1.5 0.5 1 1 2 18817000 0 0 18817000 7763 871;17 8083 33091;33092 27830;27831 27831 2 0 0 4197400 LFDQAFGLPR GPSWDPFRDWYPHSRLFDQAFGLPRLPEEW YPHSRLFDQAFGLPRLPEEWSQWLGGSSWP R L F P R L 1 1 0 1 0 1 0 1 0 0 2 0 0 2 1 0 0 0 0 0 0 0 10 0 1162.6135 P04792 P04792 28 37 HSPB1 Heat shock protein beta-1 yes yes 2 1.4434E-08 163.77 By MS/MS By MS/MS By MS/MS 7.29 1.28 2 3 1 1 1 3 3 344410000 3865100 65342000 275210000 7764 417 8084 33093;33094;33095;33096;33097;33098;33099 27832;27833;27834;27835;27836;27837;27838;27839 27839 8 8330100 42883000 47752000 LFDWANTSR DVAPMGREGVTAMHKLFDWANTSRRGLLLF VTAMHKLFDWANTSRRGLLLFVDEADAFLR K L F S R R 1 1 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 1 0 0 0 0 9 0 1108.5302 Q5T9A4;Q9NVI7 Q9NVI7 443 451 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 4.9288E-11 167.24 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 95478000 41840000 6624200 47014000 7765 2066;1456 8085 33100;33101;33102;33103 27840;27841 27841 2 48274000 2823900 8883900 LFEFAGYDVLR VGHLRSTIIGESISRLFEFAGYDVLRLNHV SISRLFEFAGYDVLRLNHVGDWGTQFGMLI R L F L R L 1 1 0 1 0 0 1 1 0 0 2 0 0 2 0 0 0 0 1 1 0 0 11 0 1328.6765 P54136 P54136 224 234 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0012636 111.65 By matching By MS/MS 2.5 0.5 1 1 1 1 7257000 0 746870 6510100 7766 927 8086 33104;33105 27842 27842 1 0 336330 1262700 LFEGNALLR AARELLTLDEKDPRRLFEGNALLRRLVRIG EKDPRRLFEGNALLRRLVRIGVLDEGKMKL R L F L R R 1 1 1 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 9 0 1031.5764 P46781 P46781 71 79 RPS9 40S ribosomal protein S9 yes yes 2 1.5315E-07 160.91 By MS/MS By MS/MS By MS/MS 6.67 1.66 2 2 2 5 2 1 1 1 7 7 611680000 5893100 288200000 317590000 7767 831 8087 33106;33107;33108;33109;33110;33111;33112;33113;33114;33115;33116;33117;33118;33119;33120 27843;27844;27845;27846;27847;27848;27849;27850;27851;27852;27853;27854;27855;27856;27857;27858 27857 16 12701000 159470000 59230000 LFELLEK PKQPNVQDFQFFPPRLFELLEKEILFYRKT DFQFFPPRLFELLEKEILFYRKTIGYKVPR R L F E K E 0 0 0 0 0 0 2 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 7 0 890.51132 O60264;P28370 O60264 781 787 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 0.015264 111.04 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 46579000 0 5444900 41134000 7768 223;693 8088 33121;33122;33123;33124 27859;27860;27861;27862 27861 4 0 2451900 9222300 LFEMASR GGPVLQFDYEAVANRLFEMASRQSTPSQNR DYEAVANRLFEMASRQSTPSQNRKRLYKVI R L F S R Q 1 1 0 0 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 7 0 852.41637 P56182 P56182 307 313 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.039108 84.244 By MS/MS 4 0.816 1 1 1 3 11130000 0 0 11130000 7769 948 8089 33125;33126;33127 27863 27863 1 0 0 1839700 LFEMGFAEQLQEIIAR KLQSVEYVVFDEADRLFEMGFAEQLQEIIA FEMGFAEQLQEIIARLPGGHQTVLFSATLP R L F A R L 2 1 0 0 0 2 3 1 0 2 2 0 1 2 0 0 0 0 0 0 0 0 16 0 1893.9659 Q8TDD1 Q8TDD1 252 267 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 1.6781E-05 152.14 By MS/MS 2 0 1 1 1882400 0 0 1882400 7770 1661 8090 33128 27864 27864 1 0 0 425390 LFEMVLGPAAYNVPLPK HFRESVEKTIPYSDKLFEMVLGPAAYNVPL EMVLGPAAYNVPLPKKSIQSGPLKISSVSE K L F P K K 2 0 1 0 0 0 1 1 0 0 3 1 1 1 3 0 0 0 1 2 0 0 17 0 1858.0063 Q16891 Q16891 85 101 IMMT MICOS complex subunit MIC60 yes yes 3 0.023256 43.798 By MS/MS 3 0 1 1 2350700 0 0 2350700 7771 1403 8091 33129 27865 27865 1 0 0 455920 LFFEFYR IVNPARKGLYEGTGRLFFEFYRLLHDARPK GLYEGTGRLFFEFYRLLHDARPKEGDDRPF R L F Y R L 0 1 0 0 0 0 1 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 7 0 1020.5069 Q9Y6K1 Q9Y6K1 730 736 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes yes 2 0.0091427 122.15 By MS/MS 2 0 1 1 3503700 0 0 3503700 7772 2313 8092 33130 27866 27866 1 0 0 791770 LFFLQVK PEDVSEELIQDITQRLFFLQVKEGILNDDI LIQDITQRLFFLQVKEGILNDDIYCPPETA R L F V K E 0 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 1 0 0 7 0 893.53747 P15311;P26038;P35241 P26038 101 107 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2 0.0159 109.88 By matching By MS/MS By MS/MS 2.67 1.11 1 2 1 2 1 3 2 30236000 529740 26858000 2848500 7773 664;569;742 8093 33131;33132;33133;33134;33135;33136 27867;27868;27869 27867 3 529740 11170000 553390 LFFTSVPGGR KAKVQKVALEDDGFRLFFTSVPGGREKEES DDGFRLFFTSVPGGREKEESPQPRRKRQPS R L F G R E 0 1 0 0 0 0 0 2 0 0 1 0 0 2 1 1 1 0 0 1 0 0 10 0 1079.5764 Q96C57 Q96C57 124 133 C12orf43 Uncharacterized protein C12orf43 yes yes 2 0.025474 79.906 By MS/MS 6 0 1 1 5654000 0 0 5654000 7774 1759 8094 33137 27870 27870 1 0 0 845890 LFFVDTGSK ERTSGGLLSEAPNEKLFFVDTGSKEKGLTK EAPNEKLFFVDTGSKEKGLTKKRTKVQKKS K L F S K E 0 0 0 1 0 0 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1012.5229 Q9NZM5 Q9NZM5 86 94 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein yes yes 2 0.026351 78.334 By MS/MS 4 0 1 1 3759800 0 3759800 0 7775 2106 8095 33138 27871 27871 1 0 1247700 0 LFGALLER EDQEEIQEAVRTCSRLFGALLERGELFVGQ AVRTCSRLFGALLERGELFVGQLPSEEMVM R L F E R G 1 1 0 0 0 0 1 1 0 0 3 0 0 1 0 0 0 0 0 0 0 0 8 0 917.53345 Q9BVI4 Q9BVI4 56 63 NOC4L Nucleolar complex protein 4 homolog yes yes 2 3.4331E-10 143.85 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 14368000 0 0 14368000 7776 1914 8096 33139;33140;33141;33142 27872;27873 27872 2 0 0 2349300 LFGALTPLEPR MTSSTNNWVLIKIIKLFGALTPLEPRLGKK KIIKLFGALTPLEPRLGKKLIEPLTNLIHS K L F P R L 1 1 0 0 0 0 1 1 0 0 3 0 0 1 2 0 1 0 0 0 0 0 11 0 1212.6867 O14617 O14617 244 254 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.0080096 95.09 By matching By MS/MS 2 0 2 1 1 9020700 2925300 0 6095500 7777 139 8097 33143;33144 27874 27874 1 3524600 0 1377500 LFGAPEPSTIAR PPRFQQVPTDALANKLFGAPEPSTIARSLP ANKLFGAPEPSTIARSLPTTVPESPNYRNT K L F A R S 2 1 0 0 0 0 1 1 0 1 1 0 0 1 2 1 1 0 0 0 0 0 12 0 1257.6717 Q6PKG0 Q6PKG0 754 765 LARP1 La-related protein 1 yes yes 2 0.0049715 103.26 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 30230000 0 22510000 7720300 7778 1497 8098 33145;33146;33147 27875;27876 27875 2 0 10286000 1744600 LFGETILGLTQGSVSDLLAR KRVKEVLTDNNLGQRLFGETILGLTQGSVS ILGLTQGSVSDLLARPKPWHKLSLKGREPF R L F A R P 1 1 0 1 0 1 1 3 0 1 5 0 0 1 0 2 2 0 0 1 0 0 20 0 2089.1419 P39880 P39880 1148 1167 CUX1 Homeobox protein cut-like 1 yes yes 2;3 4.6395E-37 204.05 By MS/MS 1.5 0.5 2 2 4 10060000 0 0 10060000 7779 781 8099 33148;33149;33150;33151 27877;27878;27879;27880 27880 4 0 0 2229400 LFGNILDK VRECARSQGFPDTYRLFGNILDKHRQVGNA GFPDTYRLFGNILDKHRQVGNAVPPPLAKA R L F D K H 0 0 1 1 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 0 0 0 8 0 918.51747 P26358 P26358 1565 1572 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.021284 83.313 By MS/MS By matching 1.5 0.5 1 1 1 1 6405700 0 4165100 2240600 7780 667 8100 33152;33153 27881 27881 1 0 2035800 506340 LFGTTVTFK FWNDSFARLSLTYERLFGTTVTFKFILANR SLTYERLFGTTVTFKFILANRLYPVSARHW R L F F K F 0 0 0 0 0 0 0 1 0 0 1 1 0 2 0 0 3 0 0 1 0 0 9 0 1012.5593 Q15904 Q15904 316 324 ATP6AP1 V-type proton ATPase subunit S1 yes yes 2 0.061376 68.224 By MS/MS 5 0 1 1 3665100 0 3665100 0 7781 1382 8101 33154 27882 27882 1 0 944750 0 LFGYEMAEFK KEGDVLTPEQARVLKLFGYEMAEFKVTIKY ARVLKLFGYEMAEFKVTIKYMWDSQSGRFQ K L F F K V 1 0 0 0 0 0 2 1 0 0 1 1 1 2 0 0 0 0 1 0 0 0 10 0 1233.574 Q9UKD2 Q9UKD2 192 201 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0061882 95.358 By matching By MS/MS 6.33 0.471 2 1 1 2 53642000 0 2080200 51562000 7782 2177 8102 33155;33156;33157 27883;27884 27883 2 0 720090 8288300 LFHEVVQAFR VERWKQAAKQRLTPKLFHEVVQAFRAAVAT RLTPKLFHEVVQAFRAAVATTRGDQESAEA K L F F R A 1 1 0 0 0 1 1 0 1 0 1 0 0 2 0 0 0 0 0 2 0 0 10 0 1244.6666 Q9Y3T9 Q9Y3T9 169 178 NOC2L Nucleolar complex protein 2 homolog yes yes 2;3 7.4512E-05 131.44 By matching By MS/MS By MS/MS 2.56 0.831 1 3 4 1 1 2 6 67285000 1427300 11251000 54607000 7783 2277 8103 33158;33159;33160;33161;33162;33163;33164;33165;33166 27885;27886;27887;27888;27889;27890 27885 6 1646800 4953100 11131000 LFHTAPNVPHYAK GFSVVRSYCGHGIHKLFHTAPNVPHYAKNK HKLFHTAPNVPHYAKNKAVGVMKSGHVFTI K L F A K N 2 0 1 0 0 0 0 0 2 0 1 1 0 1 2 0 1 0 1 1 0 0 13 0 1493.7779 P53582 P53582 299 311 METAP1 Methionine aminopeptidase 1 yes yes 3 0.057279 41.259 By MS/MS 5 0 1 1 11309000 0 11309000 0 7784 920 8104 33167 27891 27891 1 0 2915100 0 LFIGGLNTETNEK ______________________________ GKLFIGGLNTETNEKALEAVFGKYGRIVEV K L F E K A 0 0 2 0 0 0 2 2 0 1 2 1 0 1 0 0 2 0 0 0 0 0 13 0 1434.7355 P38159;Q96E39 P38159 10 22 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 6.5773E-34 210.64 By MS/MS By MS/MS By MS/MS 4.67 1.94 1 1 1 3 1 2 1 5 3 634410000 45834000 137520000 451060000 7785 771;1772 8105 33168;33169;33170;33171;33172;33173;33174;33175;33176 27892;27893;27894;27895;27896;27897 27895 6 36719000 44749000 66075000 LFIGGLNVQTSESGLR ______________________________ FIGGLNVQTSESGLRGHFEAFGTLTDCVVV K L F L R G 0 1 1 0 0 1 1 3 0 1 3 0 0 1 0 2 1 0 0 1 0 0 16 0 1689.905 Q13151 Q13151 9 24 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 2.421E-26 202.16 By MS/MS By MS/MS By MS/MS 5.27 1.96 1 1 2 2 3 1 1 1 5 5 227880000 3266400 70729000 153890000 7786 1225 8106 33177;33178;33179;33180;33181;33182;33183;33184;33185;33186;33187 27898;27899;27900;27901;27902;27903;27904;27905;27906;27907 27906 10 4349200 24470000 24463000 LFIGGLPNYLNDDQVK VPGVVSTVVPDSAHKLFIGGLPNYLNDDQV FIGGLPNYLNDDQVKELLTSFGPLKAFNLV K L F V K E 0 0 2 2 0 1 0 2 0 1 3 1 0 1 1 0 0 0 1 1 0 0 16 0 1804.9359 P26368 P26368 261 276 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2 3.5941E-05 122.55 By MS/MS By MS/MS By MS/MS 3 1.33 2 1 2 3 1 1 3 5 354710000 11567000 34439000 308700000 7787 668 8107 33188;33189;33190;33191;33192;33193;33194;33195;33196 27908;27909;27910;27911;27912;27913;27914;27915;27916 27910 9 9024500 11765000 52263000 LFIGGLSFETTDDSLR GEEGHDPKEPEQLRKLFIGGLSFETTDDSL FIGGLSFETTDDSLREHFEKWGTLTDCVVM K L F L R E 0 1 0 2 0 0 1 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1769.8836 P51991 P51991 37 52 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 3.3529E-08 164.48 By MS/MS 4.5 0.5 1 1 2 38128000 0 0 38128000 7788 900 8108 33197;33198 27917;27918 27918 1 0 0 5522700 LFIGGLSFETTDDSLREHFEK GEEGHDPKEPEQLRKLFIGGLSFETTDDSL SFETTDDSLREHFEKWGTLTDCVVMRDPQT K L F E K W 0 1 0 2 0 0 3 2 1 1 3 1 0 3 0 2 2 0 0 0 0 0 21 1 2440.1911 P51991 P51991 37 57 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3;4 2.276E-35 200.19 By MS/MS By MS/MS 4.67 1.15 1 2 4 2 2 7 84888000 0 10854000 74033000 7789 900 8109 33199;33200;33201;33202;33203;33204;33205;33206;33207 27919;27920;27921;27922;27923;27924 27924 6 0 2995200 10818000 LFIGGLSFETTDESLR MSKSESPKEPEQLRKLFIGGLSFETTDESL FIGGLSFETTDESLRSHFEQWGTLTDCVVM K L F L R S 0 1 0 1 0 0 2 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1783.8992 P09651;Q32P51 P09651 16 31 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 2.7682E-60 237.37 By MS/MS By MS/MS 4.44 2.06 1 1 1 1 2 2 1 2 7 270090000 0 76894000 193200000 7790 490 8110 33208;33209;33210;33211;33212;33213;33214;33215;33216 27925;27926;27927;27928;27929;27930;27931;27932;27933;27934 27933 10 0 25924000 29966000 LFIGGLSFETTEESLR VPLERKKREKEQFRKLFIGGLSFETTEESL FIGGLSFETTEESLRNYYEQWGKLTDCVVM K L F L R N 0 1 0 0 0 0 3 2 0 1 3 0 0 2 0 2 2 0 0 0 0 0 16 0 1797.9149 P22626 P22626 23 38 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 9.2731E-47 222.49 By MS/MS By MS/MS 4.5 2.25 1 2 1 2 2 1 1 3 7 384670000 0 83009000 301660000 7791 632 8111 33217;33218;33219;33220;33221;33222;33223;33224;33225;33226 27935;27936;27937;27938;27939;27940;27941;27942;27943;27944;27945;27946 27937 12 0 27777000 45618000 LFIGNLPR ______________________________ ______________________________ K L F P R E 0 1 1 0 0 0 0 1 0 1 2 0 0 1 1 0 0 0 0 0 0 0 8 0 928.54944 Q9BWF3;Q9BQ04 Q9BWF3 4 11 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 2.7168E-06 160.69 By MS/MS By MS/MS 6.5 1.8 1 2 1 2 1 1 4 4 56720000 0 26500000 30220000 7792 1924 8112 33227;33228;33229;33230;33231;33232;33233;33234 27947;27948;27949;27950;27951 27950 5 0 9381700 6345000 LFIISTK KWAEEFNDETNVRGRLFIISTKAGSLGINL DETNVRGRLFIISTKAGSLGINLVAANRVI R L F T K A 0 0 0 0 0 0 0 0 0 2 1 1 0 1 0 1 1 0 0 0 0 0 7 0 820.50584 P46100 P46100 2112 2118 ATRX Transcriptional regulator ATRX yes yes 2 0.03524 88.029 By matching By MS/MS 1 0 2 1 1 5551200 451210 0 5100000 7793 825 8113 33235;33236 27952 27952 1 451210 0 1098900 LFLDFLEEFQSSDGEIK QHLEVRDEVAEKCQKLFLDFLEEFQSSDGE LDFLEEFQSSDGEIKYLQLAEELIRPERNT K L F I K Y 0 0 0 2 0 1 3 1 0 1 3 1 0 3 0 2 0 0 0 0 0 0 17 0 2015.9728 Q14566 Q14566 29 45 MCM6 DNA replication licensing factor MCM6 yes yes 2 1.2898E-05 140.14 By MS/MS 2 0 1 1 5186400 0 0 5186400 7794 1305 8114 33237 27953 27953 1 0 0 1172000 LFLEFER KELFEGVQKWEETWRLFLEFERKASDPNRF QKWEETWRLFLEFERKASDPNRFTNRGGNL R L F E R K 0 1 0 0 0 0 2 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 7 0 952.50182 O43663 O43663 364 370 PRC1 Protein regulator of cytokinesis 1 yes yes 2 0.0028058 138.62 By MS/MS 4 0.707 1 2 1 4 23470000 0 0 23470000 7795 206 8115 33238;33239;33240;33241 27954;27955;27956;27957 27956 4 0 0 3916000 LFLESSDANPVR FALRYFKDTSPVFQRLFLESSDANPVRYGR FQRLFLESSDANPVRYGRRRMKLRDLMEAA R L F V R Y 1 1 1 1 0 0 1 0 0 0 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1346.683 Q9NU22 Q9NU22 126 137 MDN1 Midasin yes yes 2 1.9972E-05 152.81 By MS/MS 1.5 0.5 1 1 2 6265400 0 6265400 0 7796 2056 8116 33242;33243 27958 27958 1 0 2988500 0 LFLIDFGLAK KPDNFLMGIGRHCNKLFLIDFGLAKKYRDN RHCNKLFLIDFGLAKKYRDNRTRQHIPYRE K L F A K K 1 0 0 1 0 0 0 1 0 1 3 1 0 2 0 0 0 0 0 0 0 0 10 0 1135.6641 P48729;Q8N752 P48729 153 162 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 0.0088024 89.698 By matching By MS/MS 6 0 2 1 1 7749500 0 1562100 6187500 7797 847 8117 33244;33245 27959 27959 1 0 540730 925710 LFLPFPLPLFAYR LLFHLVKYIFAVAHRLFLPFPLPLFAYRWV HRLFLPFPLPLFAYRWVARVFEISPFEPWI R L F Y R W 1 1 0 0 0 0 0 0 0 0 4 0 0 3 3 0 0 0 1 0 0 0 13 0 1592.9119 Q16795 Q16795 287 299 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2 0.010832 87.308 By matching By MS/MS 6 0 2 1 1 2321800 0 367610 1954200 7798 1400 8118 33246;33247 27960 27960 1 0 127250 292370 LFLVQLQEK PYIPAHITKPKEHKKLFLVQLQEKALFAVP PKEHKKLFLVQLQEKALFAVPKNYKLVAAP K L F E K A 0 0 0 0 0 2 1 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 9 0 1116.6543 O43809 O43809 174 182 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 0.00048519 118.74 By MS/MS By MS/MS 8 1.67 1 2 2 2 3 67131000 0 11332000 55799000 7799 213 8119 33248;33249;33250;33251;33252 27961;27962;27963;27964 27963 4 0 10297000 14351000 LFMAQALQEYNN YCQNIKEFTAQNLGKLFMAQALQEYNN___ LGKLFMAQALQEYNN_______________ K L F N N - 2 0 2 0 0 2 1 0 0 0 2 0 1 1 0 0 0 0 1 0 0 0 12 0 1440.6708 O15372 O15372 341 352 EIF3H Eukaryotic translation initiation factor 3 subunit H yes yes 2 0.00011224 138.98 By MS/MS By matching 5.5 0.5 2 2 3 1 38468000 37579000 0 889120 7800 179 8120;8121 33253;33254;33255;33256 27965;27966 27966 77 2 30540000 0 133020 LFMLLLEK DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT LGDMEGRLFMLLLEKEEQMDGTVTLKDLRV R L F E K E 0 0 0 0 0 0 1 0 0 0 4 1 1 1 0 0 0 0 0 0 0 0 8 0 1005.5933 Q16531 Q16531 280 287 DDB1 DNA damage-binding protein 1 yes yes 2 0.016826 86.794 By MS/MS 1.5 0.5 1 1 2 3016100 0 0 3016100 7801 1387 8122 33257;33258 27967 27967 1 0 0 672050 LFNEQNFFQR QKQKFSLKLDAKDGRLFNEQNFFQRAAKPL AKDGRLFNEQNFFQRAAKPLQVNKWKKLYS R L F Q R A 0 1 2 0 0 2 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 10 0 1341.6466 Q8IV63 Q8IV63 211 220 VRK3 Inactive serine/threonine-protein kinase VRK3 yes yes 2 4.0154E-22 186.13 By MS/MS 4 0 1 1 11771000 0 0 11771000 7802 1569 8123 33259 27968 27968 1 0 0 1922600 LFNEVQEK QLMGLFNRIIRKVVKLFNEVQEKAIEEQMV IIRKVVKLFNEVQEKAIEEQMVAAKDVVME K L F E K A 0 0 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 0 1005.5131 Q9H0A0 Q9H0A0 905 912 NAT10 N-acetyltransferase 10 yes yes 2 0.011278 92.187 By matching By MS/MS 2 0 2 1 1 199930000 184860000 15067000 0 7803 1959 8124 33260;33261 27969 27969 1 222740000 6784700 0 LFNLSKEDDVR VPRRLGPKRASRIRKLFNLSKEDDVRQYVV RIRKLFNLSKEDDVRQYVVRKPLNKEGKKP K L F V R Q 0 1 1 2 0 0 1 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 11 1 1334.683 P62753 P62753 144 154 RPS6 40S ribosomal protein S6 yes yes 3 0.060466 51.841 By MS/MS 6 0 1 1 0 0 0 0 7804 1032 8125 33262 27970 27970 1 0 0 0 LFNPNDDGKEEPPTTLLWVQYYLAQHYDK EELVVGYETSLKSCRLFNPNDDGKEEPPTT TLLWVQYYLAQHYDKIGQPSIALEYINTAI R L F D K I 1 0 2 3 0 2 2 1 1 0 4 2 0 1 3 0 2 1 3 1 0 0 29 1 3493.683 Q9BXJ9 Q9BXJ9 358 386 NAA15 N-alpha-acetyltransferase 15, NatA auxiliary subunit yes yes 4 0.039426 21.169 By MS/MS 2 0 1 1 1300600 0 0 1300600 7805 1928 8126 33263 27971 27971 1 0 0 293920 LFPDTPLALDANK KKVAKAYAALAALEKLFPDTPLALDANKKK EKLFPDTPLALDANKKKRAPVPVRGGPKFA K L F N K K 2 0 1 2 0 0 0 0 0 0 3 1 0 1 2 0 1 0 0 0 0 0 13 0 1413.7504 Q12906 Q12906 588 600 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.00042293 123.79 By matching By MS/MS By MS/MS 2.64 1.07 2 3 3 3 3 4 4 220470000 11232000 114480000 94754000 7806 1211 8127 33264;33265;33266;33267;33268;33269;33270;33271;33272;33273;33274 27972;27973;27974;27975;27976;27977;27978;27979;27980;27981;27982;27983;27984 27976 13 10654000 50295000 19820000 LFPDTPLALDANKK KKVAKAYAALAALEKLFPDTPLALDANKKK KLFPDTPLALDANKKKRAPVPVRGGPKFAA K L F K K K 2 0 1 2 0 0 0 0 0 0 3 2 0 1 2 0 1 0 0 0 0 0 14 1 1541.8453 Q12906 Q12906 588 601 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 7.2053E-05 133.88 By MS/MS By MS/MS 2.8 1.08 1 3 4 1 1 4 6 101530000 0 39243000 62285000 7807 1211 8128 33275;33276;33277;33278;33279;33280;33281;33282;33283;33284 27985;27986;27987;27988;27989;27990;27991;27992;27993 27985 9 0 16901000 13057000 LFPGYPNLHFPLRPYYVGPIR ILSQLFPLESIRQPRLFPGYPNLHFPLRPY NLHFPLRPYYVGPIRILKPPFPPIPFFLAI R L F I R I 0 2 1 0 0 0 0 2 1 1 3 0 0 2 5 0 0 0 3 1 0 0 21 1 2515.3529 Q99935 Q99935 98 118 PROL1 Proline-rich protein 1;Opiorphin yes yes 4 7.7508E-06 79.97 By MS/MS 8 0 1 1 1956400 1956400 0 0 7808 1869 8129 33285 27994 27994 1 1679700 0 0 LFPLIQAMHPTLAGK ASAPPQEQKQMLGERLFPLIQAMHPTLAGK LFPLIQAMHPTLAGKITGMLLEIDNSELLH R L F G K I 2 0 0 0 0 1 0 1 1 1 3 1 1 1 2 0 1 0 0 0 0 0 15 0 1635.9171 P11940;Q9H361 P11940 566 580 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2;3 2.4005E-12 184.24 By matching By MS/MS By MS/MS 3.5 1.04 1 7 2 1 1 1 9 2 196390000 1773600 148770000 45847000 7809 530 8130;8131 33286;33287;33288;33289;33290;33291;33292;33293;33294;33295;33296;33297 27995;27996;27997;27998;27999;28000;28001;28002;28003;28004;28005;28006;28007;28008;28009;28010 28000 232 16 2046300 62612000 8892200 LFPLIQTMHSNLAGK AAAPPQEQKQMLGERLFPLIQTMHSNLAGK LFPLIQTMHSNLAGKITGMLLEIDNSELLH R L F G K I 1 0 1 0 0 1 0 1 1 1 3 1 1 1 1 1 1 0 0 0 0 0 15 0 1668.9021 Q13310 Q13310 575 589 PABPC4 Polyadenylate-binding protein 4 yes yes 3 9.2731E-05 109.84 By MS/MS 3 0 1 1 26878000 0 26878000 0 7810 1237 8132 33298 28011;28012;28013 28011 3 0 11458000 0 LFPPWIKPADTEPPPLLVYK AYLDQYLWYEADKRRLFPPWIKPADTEPPP IKPADTEPPPLLVYKWCQGINNLQDVWETS R L F Y K W 1 0 0 1 0 0 1 0 0 1 3 2 0 1 6 0 1 1 1 1 0 0 20 1 2320.2871 Q6P2Q9 Q6P2Q9 935 954 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.065024 29.892 By MS/MS 1 0 1 1 19883000 0 0 19883000 7811 1490 8133 33299 28014 28014 1 0 0 4284100 LFQDFQMLSR VGNNSEGGRGKAGAKLFQDFQMLSRIWTHP KAGAKLFQDFQMLSRIWTHPWCLQLDYISK K L F S R I 0 1 0 1 0 2 0 0 0 0 2 0 1 2 0 1 0 0 0 0 0 0 10 0 1283.6332 P46100 P46100 1872 1881 ATRX Transcriptional regulator ATRX yes yes 2 5.1413E-07 157.91 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 11926000 0 1153600 10772000 7812 825 8134 33300;33301;33302;33303 28015;28016 28016 2 0 563860 2312500 LFQECCPHSTDR AKIKELRENTQTTIKLFQECCPHSTDRVVL TIKLFQECCPHSTDRVVLIGGKPDRVVECI K L F D R V 0 1 0 1 2 1 1 0 1 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1548.6449 P61978 P61978 180 191 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 3 0.025047 57.802 By matching By MS/MS 4 0 2 1 1 12026000 7809400 0 4216400 7813 1002 8135 33304;33305 28017 28017 1 6092700 0 688680 LFQEDPEAFLLYHR LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG RLFQEDPEAFLLYHRGFQSQVKKWPLQPVD R L F H R G 1 1 0 1 0 1 2 0 1 0 3 0 0 2 1 0 0 0 1 0 0 0 14 0 1776.8835 O43159 O43159 269 282 RRP8 Ribosomal RNA-processing protein 8 yes yes 2;3 1.0678E-11 182.28 By matching By MS/MS 4 0 3 1 2 28168000 1558600 0 26609000 7814 188 8136 33306;33307;33308 28018;28019 28019 2 1216000 0 4346100 LFQFLQAEPHNSLGK TRDHMGSVMAQVRQKLFQFLQAEPHNSLGK LFQFLQAEPHNSLGKAARRLSLMLHGLVTP K L F G K A 1 0 1 0 0 2 1 1 1 0 3 1 0 2 1 1 0 0 0 0 0 0 15 0 1727.8995 Q6P2E9 Q6P2E9 1369 1383 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.0055624 65.172 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 11009000 0 3591100 7418200 7815 1489 8137 33309;33310 28020;28021 28021 2 0 1617100 1598400 LFQITPDK SGSQLLVGCEDGSVKLFQITPDKIQFERNF CEDGSVKLFQITPDKIQFERNFDRQKSRIL K L F D K I 0 0 0 1 0 1 0 0 0 1 1 1 0 1 1 0 1 0 0 0 0 0 8 0 960.52803 Q969X6 Q969X6 127 134 CIRH1A Cirhin yes yes 2 0.016776 86.833 By MS/MS 3.5 0.5 1 1 2 13854000 0 0 13854000 7816 1746 8138 33311;33312 28022 28022 1 0 0 2633500 LFQLYPR DNLEKYGFEPTQEGKLFQLYPRNFLR____ FEPTQEGKLFQLYPRNFLR___________ K L F P R N 0 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 7 0 935.52289 Q8IXM3 Q8IXM3 127 133 MRPL41 39S ribosomal protein L41, mitochondrial yes yes 2 0.0027852 138.38 By matching By MS/MS By MS/MS 8.67 0.471 1 2 1 1 1 24872000 653460 4514700 19704000 7817 1584 8139 33313;33314;33315 28023;28024 28024 2 561010 3615100 6294400 LFQSDTNAMLGK IDPNERPVTLYHLLKLFQSDTNAMLGKKTV LLKLFQSDTNAMLGKKTVVSEFYDEMIFQD K L F G K K 1 0 1 1 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 0 0 0 12 0 1323.6493 O95619 O95619 120 131 YEATS4 YEATS domain-containing protein 4 yes yes 2 0.0055081 102.06 By MS/MS By MS/MS 7 0 2 1 1 31084000 0 4043800 27041000 7818 332 8140 33316;33317 28025;28026 28026 2 0 2322000 4798200 LFQVLAPR RMADFWLTEKDLIPKLFQVLAPRYKDQTGG EKDLIPKLFQVLAPRYKDQTGGYTRMLQIP K L F P R Y 1 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 8 0 942.56509 Q9NRX2 Q9NRX2 89 96 MRPL17 39S ribosomal protein L17, mitochondrial yes yes 2 0.0072732 97.071 By MS/MS By matching 7.5 0.5 1 1 1 1 7600400 0 1826800 5773700 7819 2048 8141 33318;33319 28027 28027 1 0 1048900 885160 LFSAGNEETK EYQHMLANSISDFFRLFSAGNEETKLQVLK SDFFRLFSAGNEETKLQVLKLLLNLAENPA R L F T K L 1 0 1 0 0 0 2 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 10 0 1094.5244 Q9UH62 Q9UH62 251 260 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.060657 70.056 By MS/MS 5.5 0.5 1 1 2 8467200 0 0 8467200 7820 2147 8142 33320;33321 28028 28028 1 0 0 1204000 LFSIVRPR NEDEMMVAIFEYIDRLFSIVRPRRLLYMAI IFEYIDRLFSIVRPRRLLYMAIDGVAPRAK R L F P R R 0 2 0 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 Q9H0D6 Q9H0D6 88 95 XRN2 5-3 exoribonuclease 2 yes yes 2 0.011316 115.46 By MS/MS 2 0 1 1 4349900 0 0 4349900 7821 1960 8143 33322 28029 28029 1 0 0 983000 LFSLPAQPLWNNR TKKLMMWKETGGVEKLFSLPAQPLWNNRLL EKLFSLPAQPLWNNRLLKLFTRCLTPLVPE K L F N R L 1 1 2 0 0 1 0 0 0 0 3 0 0 1 2 1 0 1 0 0 0 0 13 0 1554.8307 O60216 O60216 372 384 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 5.8553E-25 203.35 By matching By MS/MS By MS/MS 2.44 1.07 2 3 2 2 1 4 4 141140000 1710300 31185000 108250000 7822 219 8144 33323;33324;33325;33326;33327;33328;33329;33330;33331 28030;28031;28032;28033;28034;28035;28036 28035 7 2060700 12956000 21349000 LFSNFSGADLLK TQQWLLKNRFSSYTRLFSNFSGADLLKLTK YTRLFSNFSGADLLKLTKEDLVQICGAADG R L F L K L 1 0 1 1 0 0 0 1 0 0 3 1 0 2 0 2 0 0 0 0 0 0 12 0 1310.6871 Q9NZI7 Q9NZI7 388 399 UBP1 Upstream-binding protein 1 yes yes 2 0.00154 112.13 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 33649000 0 12425000 21225000 7823 2103 8145 33332;33333;33334;33335;33336;33337 28037;28038;28039 28038 3 0 4678900 3850500 LFSWLVNR AYYARDALAKNLYSRLFSWLVNRINESIKA AKNLYSRLFSWLVNRINESIKAQTKVRKKV R L F N R I 0 1 1 0 0 0 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 8 0 1033.5709 O43795 O43795 360 367 MYO1B Unconventional myosin-Ib yes yes 2 7.6782E-24 162.51 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 4764300 0 0 4764300 7824 212 8146 33338;33339;33340 28040;28041 28040 2 0 0 1064500 LFTAHNNMTNYATVWASK NDVVYVIDSCKQKVKLFTAHNNMTNYATVW AHNNMTNYATVWASKTNLEQRKGRAGRVRP K L F S K T 3 0 3 0 0 0 0 0 1 0 1 1 1 1 0 1 3 1 1 1 0 0 18 0 2067.9836 Q08211 Q08211 738 755 DHX9 ATP-dependent RNA helicase A yes yes 2;3 1.0422E-51 223.7 By MS/MS By MS/MS 2.12 0.927 2 4 1 1 4 4 133460000 0 63141000 70322000 7825 1182 8147;8148 33341;33342;33343;33344;33345;33346;33347;33348 28042;28043;28044;28045;28046;28047 28046 562 6 0 28507000 15607000 LFTAPTFTGSFLSPWPPAVTDASFK LFLEPELVIPHRQHRLFTAPTFTGSFLSPW FLSPWPPAVTDASFKVKSHVYSLEGQDCKY R L F F K V 3 0 0 1 0 0 0 1 0 0 2 1 0 4 4 3 4 1 0 1 0 0 25 0 2684.3526 Q9NXE4 Q9NXE4 542 566 SMPD4 Sphingomyelin phosphodiesterase 4 yes yes 3 0.00022846 56.131 By MS/MS 3 0 1 1 4083700 0 0 4083700 7826 2088 8149 33349 28048 28048 1 0 0 792050 LFTAYLQLYR YGGETSGKVLTCLARLFTAYLQLYRGFTLG TCLARLFTAYLQLYRGFTLGVEDILVKPKA R L F Y R G 1 1 0 0 0 1 0 0 0 0 3 0 0 1 0 0 1 0 2 0 0 0 10 0 1286.7023 O95602 O95602 784 793 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.00038818 137.88 By MS/MS 1 0 1 1 1896700 0 0 1896700 7827 330 8150 33350 28049 28049 1 0 0 408680 LFTFHADICTLPDTEK LTPDETYVPKAFDEKLFTFHADICTLPDTE FTFHADICTLPDTEKQIKKQTALVELLKHK K L F E K Q 1 0 0 2 1 0 1 0 1 1 2 1 0 2 1 0 3 0 0 0 0 0 16 0 1906.9135 CON__P02769 CON__P02769 529 544 yes yes 3 6.5003E-06 141.55 By MS/MS By matching 6.67 1.89 1 2 2 1 31524000 30671000 0 853190 + 7828 45 8151 33351;33352;33353 28050;28051 28050 2 24788000 0 130800 LFTNFSGADLLK AQQWLHRNRFSTFTRLFTNFSGADLLKLTR FTRLFTNFSGADLLKLTRDDVIQICGPADG R L F L K L 1 0 1 1 0 0 0 1 0 0 3 1 0 2 0 1 1 0 0 0 0 0 12 0 1324.7027 Q12800 Q12800 348 359 TFCP2 Alpha-globin transcription factor CP2 yes yes 2 1.4864E-05 155.06 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 74237000 0 26640000 47597000 7829 1200 8152 33354;33355;33356;33357 28052;28053;28054 28054 3 0 8950800 8545700 LFVGFLNR KWAPFVQENLLMYTKLFVGFLNRALRTDLV NLLMYTKLFVGFLNRALRTDLVSPKHALMV K L F N R A 0 1 1 0 0 0 0 1 0 0 2 0 0 2 0 0 0 0 0 1 0 0 8 0 964.54944 Q9NXE4 Q9NXE4 483 490 SMPD4 Sphingomyelin phosphodiesterase 4 yes yes 2 6.9883E-05 149.06 By MS/MS 3 0 1 1 3154000 0 0 3154000 7830 2088 8153 33358 28055 28055 1 0 0 611720 LFVGGIKEDTEEHHLR REESGKPGAHVTVKKLFVGGIKEDTEEHHL FVGGIKEDTEEHHLRDYFEEYGKIDTIEII K L F L R D 0 1 0 1 0 0 3 2 2 1 2 1 0 1 0 0 1 0 0 1 0 0 16 1 1878.9588 P22626 P22626 114 129 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3;4 2.8596E-25 199.8 By MS/MS By MS/MS 4.91 1.89 2 3 3 2 8 8 4 2 6 26 2249800000 0 176340000 2073500000 7831 632 8154 33359;33360;33361;33362;33363;33364;33365;33366;33367;33368;33369;33370;33371;33372;33373;33374;33375;33376;33377;33378;33379;33380;33381;33382;33383;33384;33385;33386;33387;33388;33389;33390 28056;28057;28058;28059;28060;28061;28062;28063;28064;28065;28066;28067;28068;28069;28070;28071;28072;28073;28074;28075;28076;28077;28078;28079;28080;28081 28076 25 0 59723000 308690000 LFVGGLDWSTTQETLR ______________________________ FVGGLDWSTTQETLRSYFSQYGEVVDCVIM K L F L R S 0 1 0 1 0 1 1 2 0 0 3 0 0 1 0 1 3 1 0 1 0 0 16 0 1821.9261 Q96EP5 Q96EP5 12 27 DAZAP1 DAZ-associated protein 1 yes yes 2 5.6113E-47 224.66 By MS/MS By matching 5.5 1.12 1 1 1 1 2 2 41618000 0 21943000 19675000 7832 1776 8155 33391;33392;33393;33394 28082;28083 28083 2 0 6046300 3015800 LFVGNLPADITEDEFK LLRRPGEKTYTQRCRLFVGNLPADITEDEF FVGNLPADITEDEFKRLFAKYGEPGEVFIN R L F F K R 1 0 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 16 0 1806.904 P23246 P23246 299 314 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 3.5697E-05 136.27 By MS/MS By MS/MS 2.57 1.4 2 2 1 1 1 2 5 251080000 0 15584000 235500000 7833 638 8156 33395;33396;33397;33398;33399;33400;33401 28084;28085;28086;28087;28088 28087 5 0 7077100 50431000 LFVGNLPADITEDEFKR LLRRPGEKTYTQRCRLFVGNLPADITEDEF VGNLPADITEDEFKRLFAKYGEPGEVFINK R L F K R L 1 1 1 2 0 0 2 1 0 1 2 1 0 2 1 0 1 0 0 1 0 0 17 1 1963.0051 P23246 P23246 299 315 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 3.1464E-110 264.84 By MS/MS By MS/MS 3.47 1.68 2 4 3 3 3 1 1 4 13 1293300000 0 234210000 1059100000 7834 638 8157 33402;33403;33404;33405;33406;33407;33408;33409;33410;33411;33412;33413;33414;33415;33416;33417;33418 28089;28090;28091;28092;28093;28094;28095;28096;28097;28098;28099;28100;28101;28102;28103;28104 28098 16 0 104450000 223500000 LFVGNLPPDITEEEMR NFRKPGEKTFTQRSRLFVGNLPPDITEEEM FVGNLPPDITEEEMRKLFEKYGKAGEVFIH R L F M R K 0 1 1 1 0 0 3 1 0 1 2 0 1 1 2 0 1 0 0 1 0 0 16 0 1858.9135 Q15233 Q15233 76 91 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 4.5215E-60 236.57 By MS/MS By MS/MS By MS/MS 3.78 1.4 1 2 4 7 2 1 1 2 2 14 371820000 11262000 12829000 347730000 7835 1351 8158;8159 33419;33420;33421;33422;33423;33424;33425;33426;33427;33428;33429;33430;33431;33432;33433;33434;33435;33436 28105;28106;28107;28108;28109;28110;28111;28112;28113;28114;28115;28116;28117;28118;28119;28120;28121;28122;28123;28124;28125;28126;28127;28128;28129;28130;28131;28132 28121 613 28 8786700 3826000 59110000 LFVGNLPTDITEEDFK SFLKPGEKTYTQRCRLFVGNLPTDITEEDF FVGNLPTDITEEDFKRLFERYGEPSEVFIN R L F F K R 0 0 1 2 0 0 2 1 0 1 2 1 0 2 1 0 2 0 0 1 0 0 16 0 1836.9145 Q8WXF1 Q8WXF1 84 99 PSPC1 Paraspeckle component 1 yes yes 2 3.5697E-05 123.26 By MS/MS 2.5 0.5 1 1 2 15706000 0 0 15706000 7836 1695 8160 33437;33438 28133 28133 1 0 0 3115400 LFVGNLPTDITEEDFKR SFLKPGEKTYTQRCRLFVGNLPTDITEEDF VGNLPTDITEEDFKRLFERYGEPSEVFINR R L F K R L 0 1 1 2 0 0 2 1 0 1 2 1 0 2 1 0 2 0 0 1 0 0 17 1 1993.0157 Q8WXF1 Q8WXF1 84 100 PSPC1 Paraspeckle component 1 yes yes 2;3 1.5751E-06 140.91 By MS/MS 3.8 0.748 2 2 1 5 74222000 0 0 74222000 7837 1695 8161 33439;33440;33441;33442;33443 28134;28135 28134 2 0 0 13410000 LFVGSIPK PGKHLGVCISVANNRLFVGSIPKNKTKENI ISVANNRLFVGSIPKNKTKENILEEFSKVT R L F P K N 0 0 0 0 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 8 0 859.51674 O43390;O60506 O43390 248 255 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 1;2 0.0056944 98.997 By MS/MS By MS/MS 4 1.61 1 3 3 1 1 1 5 5 376440000 0 193730000 182710000 7838 195;227 8162 33444;33445;33446;33447;33448;33449;33450;33451;33452;33453 28136;28137;28138;28139;28140;28141 28141 5 0 74480000 33774000 LFVIAQK KQYNCLTQRIEREKKLFVIAQKIQTRKDLM QRIEREKKLFVIAQKIQTRKDLMDKTQKVK K L F Q K I 1 0 0 0 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 7 0 817.50617 Q9Y3A2 Q9Y3A2 212 218 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 2 0.045405 75.131 By MS/MS By MS/MS 6 0 2 1 1 18402000 0 1615900 16786000 7839 2261 8163 33454;33455 28142;28143 28143 0 0 559380 2511300 LFVTNDAATILR GPNGMNKMVINHLEKLFVTNDAATILRELE LEKLFVTNDAATILRELEVQHPAAKMIVMA K L F L R E 2 1 1 1 0 0 0 0 0 1 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1332.7402 P50990 P50990 63 74 CCT8 T-complex protein 1 subunit theta yes yes 2 0.002201 109.42 By matching By MS/MS By MS/MS 4 0 3 1 1 1 26468000 2819600 13504000 10145000 7840 885 8164 33456;33457;33458 28144;28145 28144 1 2199800 4481300 1657000 LFVWEILHSTIR ANWIFSSELSRDFTRLFVWEILHSTIRKMN FTRLFVWEILHSTIRKMNKHVLKIQKELEE R L F I R K 0 1 0 0 0 0 1 0 1 2 2 0 0 1 0 1 1 1 0 1 0 0 12 0 1512.8453 Q09161 Q09161 635 646 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 3 0.00011681 123.01 By matching By MS/MS 2.33 0.471 2 1 1 2 10625000 0 189200 10436000 7841 1189 8165 33459;33460;33461 28146;28147 28147 2 0 85200 2084400 LFYADHPFIFLVR FDQDIYGREELRSPKLFYADHPFIFLVRDT PKLFYADHPFIFLVRDTQSGSLLFIGRLVR K L F V R D 1 1 0 1 0 0 0 0 1 1 2 0 0 3 1 0 0 0 1 1 0 0 13 0 1636.8766 P50454 P50454 381 393 SERPINH1 Serpin H1 yes yes 2;3 5.3608E-08 173.24 By MS/MS By MS/MS 4.56 1.42 1 1 2 3 1 1 1 8 87583000 0 3713500 83869000 7842 879 8166 33462;33463;33464;33465;33466;33467;33468;33469;33470 28148;28149;28150;28151;28152;28153;28154;28155 28153 8 0 957220 12616000 LFYHIVDSDEVSTK EPAFYTCVEVTAGNRLFYHIVDSDEVSTKI RLFYHIVDSDEVSTKILMEFNKMNLPGEVT R L F T K I 0 0 0 2 0 0 1 0 1 1 1 1 0 1 0 2 1 0 1 2 0 0 14 0 1651.8094 Q9UQE7 Q9UQE7 558 571 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 6.0142E-34 207.67 By matching By MS/MS 1.6 0.49 2 3 1 4 108690000 755500 0 107940000 7843 2222 8167 33471;33472;33473;33474;33475 28156;28157;28158;28159 28158 4 910290 0 24034000 LFYVPQRPYMTLGTLR WPLFGGRLTKPERGKLFYVPQRPYMTLGTL FYVPQRPYMTLGTLRDQVIYPDGREDQKRK K L F L R D 0 2 0 0 0 1 0 1 0 0 3 0 1 1 2 0 2 0 2 1 0 0 16 1 1954.0499 P28288 P28288 505 520 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 3 0.037636 43.297 By MS/MS 3.5 0.5 1 1 2 10397000 0 10397000 0 7844 688 8168 33476;33477 28160 28160 1 0 3696000 0 LGAGEGGEASVSPEK DQPAARTPRSKKKKKLGAGEGGEASVSPEK LGAGEGGEASVSPEKTSTTSKGKAKRDKAS K L G E K T 2 0 0 0 0 0 3 4 0 0 1 1 0 0 1 2 0 0 0 1 0 0 15 0 1386.6627 Q13428 Q13428 1367 1381 TCOF1 Treacle protein yes yes 2 0.00030623 148.18 By MS/MS 3.33 2.62 1 1 1 3 13370000 0 0 13370000 7845 1247 8169 33478;33479;33480 28161;28162;28163 28161 3 0 0 2788800 LGALALPR LEEEAAARGRLERTRLGALALPRGDRPGRA GRLERTRLGALALPRGDRPGRAPPAASARP R L G P R G 2 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 809.51232 Q6SPF0 Q6SPF0 292 299 SAMD1 Atherin yes yes 2 0.0049433 99.919 By MS/MS 3 0 1 1 2505400 0 0 2505400 7846 1502 8170 33481 28164 28164 1 0 0 485920 LGALGGNTQEVTLQPGEYITK VKSVQVKLGDSWDVKLGALGGNTQEVTLQP NTQEVTLQPGEYITKVFVAFQAFLRGMVMY K L G T K V 1 0 1 0 0 2 2 4 0 1 3 1 0 0 1 0 3 0 1 1 0 0 21 0 2188.1376 Q96DA0 Q96DA0 101 121 ZG16B Zymogen granule protein 16 homolog B yes yes 2;3 5.4549E-142 280.62 By MS/MS 1 0 2 2 22436000 22436000 0 0 7847 1763 8171 33482;33483 28165;28166 28165 2 22436000 0 0 LGALTAEEIALK VASIKEKVKKAKNKKLGALTAEEIALKMEA NKKLGALTAEEIALKMEADEKKKKKKK___ K L G L K M 3 0 0 0 0 0 2 1 0 1 3 1 0 0 0 0 1 0 0 0 0 0 12 0 1227.7075 Q13601 Q13601 358 369 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.00014106 136.63 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 64418000 0 12662000 51756000 7848 1261 8172 33484;33485;33486 28167;28168;28169 28167 3 0 3263900 7443700 LGAMDIDTHKK SKRKSGGNEVSIEERLGAMDIDTHKKGKED IEERLGAMDIDTHKKGKEDLQTNSFPVLLT R L G K K G 1 0 0 2 0 0 0 1 1 1 1 2 1 0 0 0 1 0 0 0 0 0 11 1 1227.6282 Q15061 Q15061 442 452 WDR43 WD repeat-containing protein 43 yes yes 3 0.022246 60.641 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 32592000 0 5799400 26793000 7849 1343 8173 33487;33488;33489 28170;28171 28170 2 0 2472300 5213500 LGAMSAAPSQPNSQIR PVVPSVPMASPAPGRLGAMSAAPSQPNSQI GAMSAAPSQPNSQIRQNIRRSLKEILWKRV R L G I R Q 3 1 1 0 0 2 0 1 0 1 1 0 1 0 2 3 0 0 0 0 0 0 16 0 1626.8148 Q9BTC0 Q9BTC0 656 671 DIDO1 Death-inducer obliterator 1 yes yes 2 5.8247E-05 140.78 By MS/MS 1.5 0.5 1 1 2 15922000 0 0 15922000 7850 1900 8174 33490;33491 28172;28173 28172 2 0 0 3477200 LGANSLLDLVVFGR ACGEAACASVHGANRLGANSLLDLVVFGRA RLGANSLLDLVVFGRACALSIEESCRPGDK R L G G R A 1 1 1 1 0 0 0 2 0 0 4 0 0 1 0 1 0 0 0 2 0 0 14 0 1472.8351 P31040 P31040 452 465 SDHA Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial yes yes 2 3.4671E-11 175.54 By MS/MS 3.5 0.5 1 1 2 5913200 0 0 5913200 7851 717 8175 33492;33493 28174 28174 1 0 0 1129300 LGAPALTSR TCPGDRSAITPGGLRLGAPALTSRQFREDD TPGGLRLGAPALTSRQFREDDFRRVVDFID R L G S R Q 2 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 0 9 0 884.50797 P34897 P34897 426 434 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 5.8695E-05 147.04 By MS/MS By MS/MS 4 0 2 1 1 40086000 0 10382000 29704000 7852 734 8176 33494;33495 28175;28176 28176 2 0 3445300 4851600 LGAPQTHLGLK DGFIDLMELKLMMEKLGAPQTHLGLKNMIK MMEKLGAPQTHLGLKNMIKEVDEDFDSKLS K L G L K N 1 0 0 0 0 1 0 2 1 0 3 1 0 0 1 0 1 0 0 0 0 0 11 0 1133.6557 Q96C19;Q9BUP0 Q96C19 124 134 EFHD2;EFHD1 EF-hand domain-containing protein D2;EF-hand domain-containing protein D1 yes no 2 0.015193 86.898 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 33376000 0 6344600 27031000 7853 1757 8177 33496;33497;33498 28177;28178 28178 2 0 2196300 4223300 LGASLAFNNIYR KRLYSLALHPNAFKRLGASLAFNNIYREFR FKRLGASLAFNNIYREFREEESLVEQFVFE R L G Y R E 2 1 2 0 0 0 0 1 0 1 2 0 0 1 0 1 0 0 1 0 0 0 12 0 1337.7092 P78527 P78527 1076 1087 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.3036E-34 206.78 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 26613000 748560 7562800 18302000 7854 1089 8178 33499;33500;33501;33502 28179;28180;28181 28180 3 748560 3696600 3943400 LGAVFNQVAFPLQYTPR VAISTNTLRILALEKLGAVFNQVAFPLQYT AVFNQVAFPLQYTPRKFVIHPESNNLIIIE K L G P R K 2 1 1 0 0 2 0 1 0 0 2 0 0 2 2 0 1 0 1 2 0 0 17 0 1920.0258 Q15393 Q15393 770 786 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 5.264E-10 173.72 By MS/MS By MS/MS 2.46 1.08 3 4 3 3 5 8 88250000 0 35699000 52551000 7855 1361 8179 33503;33504;33505;33506;33507;33508;33509;33510;33511;33512;33513;33514;33515 28182;28183;28184;28185;28186;28187;28188;28189;28190 28183 9 0 15594000 11095000 LGAVPATSGPTTFK ______________________________ RLGAVPATSGPTTFKQQRSTRIVGAKNSRT R L G F K Q 2 0 0 0 0 0 0 2 0 0 1 1 0 1 2 1 3 0 0 1 0 0 14 0 1345.7242 Q96ME7 Q96ME7 5 18 ZNF512 Zinc finger protein 512 yes yes 2 0.018949 74.962 By MS/MS 3 0 1 1 13976000 0 0 13976000 7856 1809 8180 33516 28191 28191 1 0 0 2710800 LGDAVIWGTGQLFQAQQDLLHR LICRDLLILQQLLMRLGDAVIWGTGQLFQA GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS R L G H R T 2 1 0 2 0 4 0 3 1 1 4 0 0 1 0 0 1 1 0 1 0 0 22 0 2465.2815 Q12769 Q12769 744 765 NUP160 Nuclear pore complex protein Nup160 yes yes 3 2.452E-20 139.11 By MS/MS 1.5 0.5 1 1 2 8870300 0 0 8870300 7857 1196 8181 33517;33518 28192;28193 28193 2 0 0 1955500 LGDFFGDPGNPPEFNPSGSK HIQESRFLYPGKNGRLGDFFGDPGNPPEFN GDPGNPPEFNPSGSKDGKYELLTSANEVIV R L G S K D 0 0 2 2 0 0 1 4 0 0 1 1 0 3 4 2 0 0 0 0 0 0 20 0 2077.9381 Q13889 Q13889 78 97 GTF2H3 General transcription factor IIH subunit 3 yes yes 2 0.0044988 64.244 By MS/MS 6 0 1 1 2618300 0 0 2618300 7858 1275 8182 33519 28194 28194 1 0 0 391730 LGDKILQVSFK YEEAAMAIASLNGYRLGDKILQVSFKTNKS NGYRLGDKILQVSFKTNKSHK_________ R L G F K T 0 0 0 1 0 1 0 1 0 1 2 2 0 1 0 1 0 0 0 1 0 0 11 1 1246.7285 Q15717 Q15717 310 320 ELAVL1 ELAV-like protein 1 yes yes 3 0.0010481 102.4 By MS/MS 6 0 1 1 3630500 0 3630500 0 7859 1380 8183 33520 28195 28195 1 0 1256700 0 LGDLYEEEMR LLAELEQLKGQGKSRLGDLYEEEMRELRRQ QGKSRLGDLYEEEMRELRRQVDQLTNDKAR R L G M R E 0 1 0 1 0 0 3 1 0 0 2 0 1 0 0 0 0 0 1 0 0 0 10 0 1253.5598 P08670 P08670 146 155 VIM Vimentin yes yes 2 8.4901E-30 202.28 By MS/MS By MS/MS By MS/MS 4.07 1.58 1 1 3 4 2 2 1 1 4 9 1590100000 40031000 31686000 1518400000 7860 476 8184;8185 33521;33522;33523;33524;33525;33526;33527;33528;33529;33530;33531;33532;33533;33534 28196;28197;28198;28199;28200;28201;28202;28203;28204;28205;28206 28201 10 31231000 11247000 242390000 LGDPLEAFPVFK AAMDAVCAKVDAANRLGDPLEAFPVFKKYD ANRLGDPLEAFPVFKKYDRNGLNVSIECKR R L G F K K 1 0 0 1 0 0 1 1 0 0 2 1 0 2 2 0 0 0 0 1 0 0 12 0 1331.7125 Q86UY6 Q86UY6 35 46 NAA40 N-alpha-acetyltransferase 40 yes yes 2 0.0646 69.276 By MS/MS 7 0 1 1 2185300 0 2185300 0 7861 1550 8186 33535 28207 28207 1 0 1254800 0 LGDVYVNDAFGTAHR AEPAKIEAFRASLSKLGDVYVNDAFGTAHR LGDVYVNDAFGTAHRAHSSMVGVNLPQKAG K L G H R A 2 1 1 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 1 2 0 0 15 0 1633.7849 P00558;P07205 P00558 157 171 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 yes no 3 0.00010423 106.76 By MS/MS By matching By MS/MS 5.33 0.471 2 1 1 1 1 31286000 9657000 1934600 19695000 7862 363 8187 33536;33537;33538 28208;28209 28208 2 7736400 669690 2747100 LGEFFQTK DIENEVVQITWNRKKLGEFFQTKYDWDLLA ITWNRKKLGEFFQTKYDWDLLAARSIWAFG K L G T K Y 0 0 0 0 0 1 1 1 0 0 1 1 0 2 0 0 1 0 0 0 0 0 8 0 968.49673 Q15029 Q15029 714 721 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0013239 117.39 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 34855000 0 7890600 26965000 7863 1335 8188 33539;33540;33541;33542 28210;28211 28210 2 0 3553200 5941200 LGEHNIDVLEGNEQFINAAK VVSAAHCYKSRIQVRLGEHNIDVLEGNEQF IDVLEGNEQFINAAKIITHPNFNGNTLDND R L G A K I 2 0 3 1 0 1 3 2 1 2 2 1 0 1 0 0 0 0 0 1 0 0 20 0 2210.0968 CON__P00761 CON__P00761 58 77 yes yes 2;3 0 461.46 By MS/MS By MS/MS By MS/MS 5.57 3.02 5 3 4 2 3 4 5 3 3 5 16 14 7 3016100000 2292200000 674180000 49737000 + 7864 32 8189 33543;33544;33545;33546;33547;33548;33549;33550;33551;33552;33553;33554;33555;33556;33557;33558;33559;33560;33561;33562;33563;33564;33565;33566;33567;33568;33569;33570;33571;33572;33573;33574;33575;33576;33577;33578;33579 28212;28213;28214;28215;28216;28217;28218;28219;28220;28221;28222;28223;28224;28225;28226;28227;28228;28229;28230;28231;28232;28233;28234;28235;28236;28237;28238;28239;28240;28241;28242;28243;28244;28245;28246;28247 28214 36 2909000000 949470000 13389000 LGEHNIEVLEGNEQFINAAK VVSAGHCYKSRIQVRLGEHNIEVLEGNEQF IEVLEGNEQFINAAKIIRHPQYDRKTLNND R L G A K I 2 0 3 0 0 1 4 2 1 2 2 1 0 1 0 0 0 0 0 1 0 0 20 0 2224.1124 CON__P07477;Q8NHM4;P07478;P07477 CON__P07477 73 92 PRSS3P2;PRSS2;PRSS1 Putative trypsin-6;Trypsin-2;Trypsin-1;Alpha-trypsin chain 1;Alpha-trypsin chain 2 yes no 2 6.1948E-05 83.617 By MS/MS By MS/MS 4.42 2.53 2 1 2 2 1 1 1 1 1 5 7 154060000 87533000 0 66527000 + 7865 50 8190 33580;33581;33582;33583;33584;33585;33586;33587;33588;33589;33590;33591 28248;28249;28250;28251;28252;28253;28254;28255;28256 28251 9 72700000 0 11955000 LGEIVTTIPTIGFNVETVEYK GLDAAGKTTILYKLKLGEIVTTIPTIGFNV TIPTIGFNVETVEYKNISFTVWDVGGQDKI K L G Y K N 0 0 1 0 0 0 3 2 0 3 1 1 0 1 1 0 4 0 1 3 0 0 21 0 2322.2359 P84077;P61204;P84085;P18085 P84077 39 59 ARF1;ARF3;ARF5;ARF4 ADP-ribosylation factor 1;ADP-ribosylation factor 3;ADP-ribosylation factor 5;ADP-ribosylation factor 4 yes no 2;3 0.00012247 73.21 By MS/MS 8 0 2 2 11018000 0 0 11018000 7866 984 8191 33592;33593 28257;28258 28258 2 0 0 1689200 LGELLFPSSLAGETLGSFSGLR ALSTTSSKLETPPSKLGELLFPSSLAGETL SSLAGETLGSFSGLRVGQADDSTKPTNKAS K L G L R V 1 1 0 0 0 0 2 4 0 0 6 0 0 2 1 4 1 0 0 0 0 0 22 0 2250.1896 P35658 P35658 1317 1338 NUP214 Nuclear pore complex protein Nup214 yes yes 2;3 5.7297E-19 126.88 By MS/MS 1 0 2 2 5984500 0 0 5984500 7867 757 8192 33594;33595 28259;28260 28259 2 0 0 1289400 LGELLGHPSFQVK YKVWMRHRYHSCCNRLGELLGHPSFQVKEL NRLGELLGHPSFQVKELALSALLKFVQLEG R L G V K E 0 0 0 0 0 1 1 2 1 0 3 1 0 1 1 1 0 0 0 1 0 0 13 0 1423.7823 Q9BVI4 Q9BVI4 103 115 NOC4L Nucleolar complex protein 4 homolog yes yes 2;3 0.0051359 100.07 By MS/MS 3.67 0.471 1 2 3 33475000 0 0 33475000 7868 1914 8193 33596;33597;33598 28261;28262 28262 2 0 0 5522500 LGELTMQLHPVADSSPAGAK KVGEIFSAAGAAFTKLGELTMQLHPVADSS MQLHPVADSSPAGAKWTETEIEMLRAAVKR K L G A K W 3 0 0 1 0 1 1 2 1 0 3 1 1 0 2 2 1 0 0 1 0 0 20 0 2021.0252 Q8IXM2 Q8IXM2 22 41 BAP18 Chromatin complexes subunit BAP18 yes yes 2;3 6.3229E-36 200.19 By matching By MS/MS By MS/MS 6.8 0.98 1 3 1 1 1 3 48217000 3068900 7763900 37384000 7869 1583 8194 33599;33600;33601;33602;33603 28263;28264;28265 28265 3 2458500 4458100 6574700 LGEMWNNLNDSEK KSTNPGISIGDVAKKLGEMWNNLNDSEKQP KKLGEMWNNLNDSEKQPYITKAAKLKEKYE K L G E K Q 0 0 3 1 0 0 2 1 0 0 2 1 1 0 0 1 0 1 0 0 0 0 13 0 1548.6879 O15347 O15347 127 139 HMGB3 High mobility group protein B3 yes yes 2 7.1324E-34 210.08 By MS/MS 6.67 0.471 1 2 3 66715000 0 0 66715000 7870 176 8195;8196 33604;33605;33606 28266;28267;28268 28267 76 3 0 0 11637000 LGEMWNNTAADDKQPYEK KGEHPGLSIGDVAKKLGEMWNNTAADDKQP MWNNTAADDKQPYEKKAAKLKEKYEKDIAA K L G E K K 2 0 2 2 0 1 2 1 0 0 1 2 1 0 1 0 1 1 1 0 0 0 18 1 2108.9473 P09429 P09429 129 146 HMGB1 High mobility group protein B1 yes yes 2;3 2.161E-113 261.41 By MS/MS By MS/MS 6.44 0.497 5 4 1 8 417330000 0 4524600 412800000 7871 484 8197;8198 33607;33608;33609;33610;33611;33612;33613;33614;33615 28269;28270;28271;28272;28273;28274;28275;28276;28277 28271 197 9 0 1566300 67058000 LGEMWNNTAADDKQPYEKK KGEHPGLSIGDVAKKLGEMWNNTAADDKQP WNNTAADDKQPYEKKAAKLKEKYEKDIAAY K L G K K A 2 0 2 2 0 1 2 1 0 0 1 3 1 0 1 0 1 1 1 0 0 0 19 2 2237.0423 P09429 P09429 129 147 HMGB1 High mobility group protein B1 yes yes 3 0.00017078 86.213 By matching By MS/MS 6 0 2 1 1 15150000 0 8739300 6410400 7872 484 8199 33616;33617 28278 28278 1 0 3025200 959070 LGEMWSEQSAK KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP TAKKLGEMWSEQSAKDKQPYEQKAAKLKEK K L G A K D 1 0 0 0 0 1 2 1 0 0 1 1 1 0 0 2 0 1 0 0 0 0 11 0 1264.5758 P26583 P26583 129 139 HMGB2 High mobility group protein B2 yes yes 2 2.1047E-20 195.57 By MS/MS By MS/MS 6.3 1.1 1 1 3 4 1 3 7 464400000 0 23648000 440750000 7873 670 8200;8201 33618;33619;33620;33621;33622;33623;33624;33625;33626;33627 28279;28280;28281;28282;28283;28284;28285;28286 28280 300 8 0 12473000 72515000 LGESQTLQQFSR RWRRLKAQMIEKRSKLGESQTLQQFSRDVD RSKLGESQTLQQFSRDVDEIEAWISEKLQT K L G S R D 0 1 0 0 0 3 1 1 0 0 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1392.6997 Q13813 Q13813 1547 1558 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 3.1615E-148 289.88 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 47481000 4704900 42777000 0 7874 1268 8202 33628;33629;33630;33631 28287;28288;28289 28287 3 4704900 20636000 0 LGEVNTYAGDLQK KSELTQQLNALFQDKLGEVNTYAGDLQKKL DKLGEVNTYAGDLQKKLVPFATELHERLAK K L G Q K K 1 0 1 1 0 1 1 2 0 0 2 1 0 0 0 0 1 0 1 1 0 0 13 0 1406.7042 P06727 P06727 66 78 APOA4 Apolipoprotein A-IV yes yes 2 2.913E-07 167.12 By MS/MS By matching 9 0.816 1 1 1 2 1 13083000 9437200 3645800 0 7875 446 8203 33632;33633;33634 28290 28290 1 5812400 18445000 0 LGEVSTYTDDLQK KSELTQQLNTLFQDKLGEVSTYTDDLQKKL DKLGEVSTYTDDLQKKLVPFATELHERLTK K L G Q K K 0 0 0 2 0 1 1 1 0 0 2 1 0 0 0 1 2 0 1 1 0 0 13 0 1467.7093 CON__Q32PJ2 CON__Q32PJ2 66 78 yes yes 2 0.00027762 133.81 By MS/MS By matching By MS/MS 6.25 1.98 1 3 2 1 1 2 2 4 98698000 21183000 13528000 63988000 + 7876 81 8204 33635;33636;33637;33638;33639;33640;33641;33642 28291;28292;28293;28294;28295;28296 28293 6 20393000 3820900 10750000 LGEVVNTHGPVEPDKDNIR SKRSYQFWDTQPVPKLGEVVNTHGPVEPDK VNTHGPVEPDKDNIRQEPYTLPQGFTWDAL K L G I R Q 0 1 2 2 0 0 2 2 1 1 1 1 0 0 2 0 1 0 0 3 0 0 19 1 2088.06 P30419 P30419 128 146 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 4 1.8214E-06 103.85 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 94097000 0 7367700 86730000 7877 714 8205 33643;33644;33645;33646 28297;28298;28299 28298 3 0 2445100 14573000 LGEYGFQNALIVR EPQNLIKQNCDQFEKLGEYGFQNALIVRYT EKLGEYGFQNALIVRYTRKVPQVSTPTLVE K L G V R Y 1 1 1 0 0 1 1 2 0 1 2 0 0 1 0 0 0 0 1 1 0 0 13 0 1478.7882 CON__P02769 CON__P02769 421 433 yes yes 2 1.01E-44 218.47 By MS/MS By MS/MS By MS/MS 5 2.76 3 3 3 3 3 3 3 2 3 9 9 8 1845500000 1187900000 312210000 345460000 + 7878 45 8206 33647;33648;33649;33650;33651;33652;33653;33654;33655;33656;33657;33658;33659;33660;33661;33662;33663;33664;33665;33666;33667;33668;33669;33670;33671;33672 28300;28301;28302;28303;28304;28305;28306;28307;28308;28309;28310;28311;28312;28313;28314;28315;28316;28317;28318;28319;28320;28321;28322;28323;28324;28325;28326;28327 28302 28 1255300000 354370000 93982000 LGFAGLVQEISFGTTK GGRIVPRFSELTAEKLGFAGLVQEISFGTT GFAGLVQEISFGTTKDKMLVIEQCKNSRAV K L G T K D 1 0 0 0 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 1 0 0 16 0 1666.893 P48643 P48643 353 368 CCT5 T-complex protein 1 subunit epsilon yes yes 2 4.4586E-05 116.24 By matching By MS/MS By MS/MS 3.67 0.471 1 2 1 1 1 12088000 1358400 6858400 3871700 7879 845 8207 33673;33674;33675 28328;28329 28329 2 1059800 2276000 750920 LGFATSSDVIEMK LQMDELKCRKRVLRRLGFATSSDVIEMKGR RRLGFATSSDVIEMKGRVACEISSADELLL R L G M K G 1 0 0 1 0 0 1 1 0 1 1 1 1 1 0 2 1 0 0 1 0 0 13 0 1396.6908 P42285 P42285 861 873 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.0049114 100.69 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 15748000 0 2299200 13449000 7880 800 8208 33676;33677;33678 28330;28331 28331 2 0 1035400 3017300 LGFDKENVYDELR YTEEEDRFLICMLHKLGFDKENVYDELRQC HKLGFDKENVYDELRQCIRNSPQFRFDWFL K L G L R Q 0 1 1 2 0 0 2 1 0 0 2 1 0 1 0 0 0 0 1 1 0 0 13 1 1596.7784 O60264 O60264 962 974 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 8.0684E-44 218.15 By MS/MS 1.5 0.5 2 2 4 72168000 0 0 72168000 7881 223 8209 33679;33680;33681;33682 28332;28333;28334 28334 3 0 0 16203000 LGFEGGQTPFYIR GRGHKGERQRGTRPRLGFEGGQTPFYIRIP PRLGFEGGQTPFYIRIPKYGFNEGHSFRRQ R L G I R I 0 1 0 0 0 1 1 3 0 1 1 0 0 2 1 0 1 0 1 0 0 0 13 0 1483.746 Q9P015 Q9P015 65 77 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 2 1.2971E-07 109.42 By MS/MS 6 0 1 1 0 0 0 0 7882 2110 8210 33683 28335 28335 1 0 0 0 LGFFTTYFLPLANTLK SWLLPVIRDHVQETRLGFFTTYFLPLANTL GFFTTYFLPLANTLKSKAMDLAQAGSTVES R L G L K S 1 0 1 0 0 0 0 1 0 0 4 1 0 3 1 0 3 0 1 0 0 0 16 0 1845.0077 Q5JTH9 Q5JTH9 582 597 RRP12 RRP12-like protein yes yes 2 0.00012824 100.56 By MS/MS 2 0.816 1 1 1 3 7567300 0 0 7567300 7883 1438 8211 33684;33685;33686 28336;28337;28338 28336 3 0 0 1638100 LGFHLPLEVAYQR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY PRLGFHLPLEVAYQRGYLNKDTHDQLSEPS R L G Q R G 1 1 0 0 0 1 1 1 1 0 3 0 0 1 1 0 0 0 1 1 0 0 13 0 1541.8354 Q15149 Q15149 3951 3963 PLEC Plectin yes yes 3 0.0010691 98.105 By MS/MS By matching 1.5 0.5 1 1 1 1 7846900 0 3168300 4678600 7884 1348 8212 33687;33688 28339 28339 1 0 1548600 1057300 LGFTQGDVGLAMGK ELEQFAKTFKQRRIKLGFTQGDVGLAMGKL KLGFTQGDVGLAMGKLYGNDFSQTTISRFE K L G G K L 1 0 0 1 0 1 0 4 0 0 2 1 1 1 0 0 1 0 0 1 0 0 14 0 1392.7071 P14859;Q9UKI9;P09086 P14859 302 315 POU2F1;POU2F3;POU2F2 POU domain, class 2, transcription factor 1;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2 yes no 2 0.025868 71.524 By matching By MS/MS 3 1.41 1 1 1 1 1 1 4 28122000 8985600 0 19137000 7885 564 8213 33689;33690;33691;33692;33693 28340;28341 28340 2 8985600 0 3478300 LGGAVLSFSEATSSVQK VSTRTSSSFAAAMARLGGAVLSFSEATSSV GAVLSFSEATSSVQKGESLADSVQTMSCYA R L G Q K G 2 0 0 0 0 1 1 2 0 0 2 1 0 1 0 4 1 0 0 2 0 0 17 0 1679.873 P27708 P27708 1987 2003 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 7.868E-06 127.17 By MS/MS 1 0 1 1 4675700 0 4675700 0 7886 681 8214 33694 28342 28342 1 0 2285400 0 LGGHGPSFPLK GKEDGSGDRGDGPFRLGGHGPSFPLKGITE GPFRLGGHGPSFPLKGITEQQKEGLEIVKM R L G L K G 0 0 0 0 0 0 0 3 1 0 2 1 0 1 2 1 0 0 0 0 0 0 11 0 1108.6029 P13010 P13010 185 195 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.010677 89.886 By MS/MS 3 0 1 1 17188000 0 17188000 0 7887 542 8215 33695 28343 28343 1 0 7327300 0 LGGIAYFLSR RTPLEELCLQIKILRLGGIAYFLSRLMDPP IKILRLGGIAYFLSRLMDPPSNEAVLLSIR R L G S R L 1 1 0 0 0 0 0 2 0 1 2 0 0 1 0 1 0 0 1 0 0 0 10 0 1095.6077 Q9H2U1 Q9H2U1 648 657 DHX36 ATP-dependent RNA helicase DHX36 yes yes 2 0.00048239 127.68 By MS/MS By matching 2.5 0.5 1 1 1 1 5175100 0 4434400 740640 7888 1976 8216 33696;33697 28344 28344 1 0 1996900 143650 LGGIGQFLAK RTPLHEIALSIKLLRLGGIGQFLAKAIEPP IKLLRLGGIGQFLAKAIEPPPLDAVIEAEH R L G A K A 1 0 0 0 0 1 0 3 0 1 2 1 0 1 0 0 0 0 0 0 0 0 10 0 1002.5862 Q08211 Q08211 810 819 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00020623 136.11 By MS/MS By MS/MS By MS/MS 1.6 0.49 2 3 1 2 2 304210000 19687000 133870000 150650000 7889 1182 8217 33698;33699;33700;33701;33702 28345;28346;28347;28348;28349 28346 5 23721000 61026000 33605000 LGGLRPESPESLTSVSR ______________________________ GLRPESPESLTSVSRTRRALVEFESNPEET R L G S R T 0 2 0 0 0 0 2 2 0 0 3 0 0 0 2 4 1 0 0 1 0 0 17 1 1783.9428 Q9H6F5 Q9H6F5 11 27 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 4.0837E-08 165.64 By MS/MS 4 0 1 1 8615800 0 0 8615800 7890 1986 8218 33703 28350 28350 1 0 0 1407200 LGGLTQAPGNPVLAVQINQDK ITEEAMMDFFNAQMRLGGLTQAPGNPVLAV APGNPVLAVQINQDKNFAFLEFRSVDETTQ R L G D K N 2 0 2 1 0 3 0 3 0 1 3 1 0 0 2 0 1 0 0 2 0 0 21 0 2132.159 P26368 P26368 175 195 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2;3 1.6468E-70 228.76 By MS/MS By MS/MS 3.73 1.35 1 1 2 4 2 1 2 9 265160000 0 59695000 205470000 7891 668 8219 33704;33705;33706;33707;33708;33709;33710;33711;33712;33713;33714 28351;28352;28353;28354;28355;28356;28357;28358 28352 8 0 19811000 33892000 LGGNEIVSFLK EVPISFVDRVYGESKLGGNEIVSFLKGLLT GESKLGGNEIVSFLKGLLTLFATT______ K L G L K G 0 0 1 0 0 0 1 2 0 1 2 1 0 1 0 1 0 0 0 1 0 0 11 0 1175.655 O60762 O60762 241 251 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 0.003954 98.055 By MS/MS 7 0 1 1 0 0 0 0 7892 231 8220 33715 28359 28359 1 0 0 0 LGGPEAGLGEYLFER KLIKKMGDHLTNLHRLGGPEAGLGEYLFER LGGPEAGLGEYLFERLTLKHD_________ R L G E R L 1 1 0 0 0 0 3 4 0 0 3 0 0 1 1 0 0 0 1 0 0 0 15 0 1606.7991 P02792 P02792 155 169 FTL Ferritin light chain yes yes 2 0.001172 96.745 By MS/MS 8 0 1 1 9955400 0 0 9955400 7893 402 8221 33716 28360 28360 1 0 0 1526300 LGGSAVISLEGKPL NCYEEVKDRCTLAEKLGGSAVISLEGKPL_ KLGGSAVISLEGKPL_______________ K L G P L - 1 0 0 0 0 0 1 3 0 1 3 1 0 0 1 2 0 0 0 1 0 0 14 1 1339.7711 P23528 P23528 153 166 CFL1 Cofilin-1 yes yes 2 0.003037 127.83 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 62648000 8606600 0 54042000 7894 645 8222 33717;33718;33719 28361;28362 28361 2 9389400 0 8285100 LGGSLADSYLDEGFLLDK LKGSGNLEAIHIIKKLGGSLADSYLDEGFL SLADSYLDEGFLLDKKIGVNQPKRIENAKI K L G D K K 1 0 0 3 0 0 1 3 0 0 5 1 0 1 0 2 0 0 1 0 0 0 18 0 1911.9466 P78371 P78371 205 222 CCT2 T-complex protein 1 subunit beta yes yes 2 0.0049766 70.622 By MS/MS 4 0 1 1 5440000 0 0 5440000 7895 1086 8223 33720 28363 28363 1 0 0 888530 LGGSLADSYLDEGFLLDKK LKGSGNLEAIHIIKKLGGSLADSYLDEGFL LADSYLDEGFLLDKKIGVNQPKRIENAKIL K L G K K I 1 0 0 3 0 0 1 3 0 0 5 2 0 1 0 2 0 0 1 0 0 0 19 1 2040.0415 P78371 P78371 205 223 CCT2 T-complex protein 1 subunit beta yes yes 2 0.0004307 94.551 By MS/MS 3.5 0.5 1 1 2 3916400 0 0 3916400 7896 1086 8224 33721;33722 28364 28364 1 0 0 689960 LGHAEQKDEMVPR SQKRVFSWGFGGYGRLGHAEQKDEMVPRLV GRLGHAEQKDEMVPRLVKLFDFPGRGASQI R L G P R L 1 1 0 1 0 1 2 1 1 0 1 1 1 0 1 0 0 0 0 1 0 0 13 1 1508.7406 Q9P258 Q9P258 362 374 RCC2 Protein RCC2 yes yes 3 0.0080487 73.466 By MS/MS 3.5 0.5 1 1 2 6294100 0 0 6294100 7897 2120 8225 33723;33724 28365 28365 1 0 0 1096600 LGHELQQAGLK QLQKENKELRAEAERLGHELQQAGLKTKEA EAERLGHELQQAGLKTKEAEQTCRHLTAQV R L G L K T 1 0 0 0 0 2 1 2 1 0 3 1 0 0 0 0 0 0 0 0 0 0 11 0 1192.6564 Q14980 Q14980 1655 1665 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 2.6234E-13 174.86 By MS/MS 1 0 1 1 7008500 0 7008500 0 7898 1327 8226 33725 28366 28366 1 0 3425700 0 LGHGEEELETEKDFSR EKIMALDIDERHLLRLGHGEEELETEKDFS GHGEEELETEKDFSRYGRVNYVLARRIELL R L G S R Y 0 1 0 1 0 0 5 2 1 0 2 1 0 1 0 1 1 0 0 0 0 0 16 1 1874.8646 O60306 O60306 879 894 AQR Intron-binding protein aquarius yes yes 3 2.803E-05 101.39 By MS/MS 1.5 0.5 1 1 2 19056000 0 0 19056000 7899 225 8227 33726;33727 28367;28368 28368 2 0 0 4193500 LGHGVNNAAGQVGK EINHGIGQAGKEAEKLGHGVNNAAGQVGKE KLGHGVNNAAGQVGKEADKLIHHGVHHGAN K L G G K E 2 0 2 0 0 1 0 4 1 0 1 1 0 0 0 0 0 0 0 2 0 0 14 0 1320.6898 Q6UWP8 Q6UWP8 115 128 SBSN Suprabasin yes yes 2;3 0.0024337 99.653 By MS/MS By MS/MS 5.5 4.19 2 1 1 2 5 1 10194000 8973000 0 1220700 7900 1504 8228 33728;33729;33730;33731;33732;33733 28369;28370;28371;28372;28373;28374 28370 6 11120000 0 2669800 LGHPDTLNQGEFK NIETIINTFHQYSVKLGHPDTLNQGEFKEL VKLGHPDTLNQGEFKELVRKDLQNFLKKEN K L G F K E 0 0 1 1 0 1 1 2 1 0 2 1 0 1 1 0 1 0 0 0 0 0 13 0 1454.7154 P06702 P06702 26 38 S100A9 Protein S100-A9 yes yes 2;3 9.1966E-06 162.93 By MS/MS By MS/MS By MS/MS 6.57 3.08 2 1 2 1 1 2 2 2 3 5 16 1 4 195900000 167480000 3332000 25095000 7901 445 8229 33734;33735;33736;33737;33738;33739;33740;33741;33742;33743;33744;33745;33746;33747;33748;33749;33750;33751;33752;33753;33754 28375;28376;28377;28378;28379;28380;28381;28382;28383;28384;28385;28386;28387;28388;28389;28390;28391 28386 17 164310000 16857000 38154000 LGIASAQMDFR TGRSDSQTRRTYFGKLGIASAQMDFRIEVT YFGKLGIASAQMDFRIEVTRENITLWNGDS K L G F R I 2 1 0 1 0 1 0 1 0 1 1 0 1 1 0 1 0 0 0 0 0 0 11 0 1207.6019 CON__Q0V8M9 CON__Q0V8M9 713 723 yes yes 2 0.070767 68.847 By MS/MS 6 0 1 1 3274200 0 0 3274200 + 7902 75 8230 33755 28392 28392 1 0 0 489860 LGIDDLVHFDFMDPPAPETLMR ILRSNLGSVVLQLKKLGIDDLVHFDFMDPP HFDFMDPPAPETLMRALELLNYLAALNDDG K L G M R A 1 1 0 4 0 0 1 1 1 1 3 0 2 2 3 0 1 0 0 1 0 0 22 0 2528.208 O43143 O43143 517 538 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 3.9136E-05 76.329 By MS/MS 2.5 0.5 1 1 2 6373900 0 0 6373900 7903 186 8231 33756;33757 28393 28393 1 0 0 1375800 LGIGQSQEMNTLFR VYHKYRRRCLNERKRLGIGQSQEMNTLFRF RLGIGQSQEMNTLFRFWSFFLRDHFNKKMY R L G F R F 0 1 1 0 0 2 1 2 0 1 2 0 1 1 0 1 1 0 0 0 0 0 14 0 1592.7981 Q6PKG0;Q659C4 Q6PKG0 904 917 LARP1;LARP1B La-related protein 1;La-related protein 1B yes no 2 4.2758E-17 187.42 By MS/MS By MS/MS 3.25 1.98 2 2 1 1 2 3 5 41542000 0 18425000 23117000 7904 1497 8232 33758;33759;33760;33761;33762;33763;33764;33765 28394;28395;28396;28397;28398 28395 5 0 8241700 4427800 LGIYEAMK SSCIAGIYNETTKQKLGIYEAMKIGLVRPG NETTKQKLGIYEAMKIGLVRPGTALELLEA K L G M K I 1 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 1 0 0 0 8 0 923.47864 P15924 P15924 2272 2279 DSP Desmoplakin yes yes 2 0.033452 77.058 By MS/MS By MS/MS 5 4 1 1 1 1 45752000 38526000 7226500 0 7905 572 8233 33766;33767 28399;28400 28399 2 21625000 3532200 0 LGKDAVEDLESVGK KGLDGAKKAVGGLGKLGKDAVEDLESVGKG KLGKDAVEDLESVGKGAVHDVKDVLDSVL_ K L G G K G 1 0 0 2 0 0 2 2 0 0 2 2 0 0 0 1 0 0 0 2 0 0 14 1 1458.7566 P81605 P81605 83 96 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 1.8477E-72 248.36 By MS/MS By matching By MS/MS 5.43 3.02 3 3 4 3 4 2 2 2 2 5 19 2 9 2305600000 2252100000 3609400 49877000 7906 1094 8234 33768;33769;33770;33771;33772;33773;33774;33775;33776;33777;33778;33779;33780;33781;33782;33783;33784;33785;33786;33787;33788;33789;33790;33791;33792;33793;33794;33795;33796;33797 28401;28402;28403;28404;28405;28406;28407;28408;28409;28410;28411;28412;28413;28414;28415;28416;28417;28418;28419;28420;28421 28402 21 2203400000 9521800 19993000 LGKPGLGGSSGLAGAWLK GLAVKEWLLAHEGHRLGKPGLGGSSGLAGA PGLGGSSGLAGAWLKGAGATSGSPPAGRN_ R L G L K G 2 0 0 0 0 0 0 6 0 0 4 2 0 0 1 2 0 1 0 0 0 0 18 1 1667.9359 P16455 P16455 176 193 MGMT Methylated-DNA--protein-cysteine methyltransferase yes yes 3 0.064687 31.462 By MS/MS 7 0 1 1 7101900 0 0 7101900 7907 579 8235 33798 28422 28422 1 0 0 1260200 LGLAKSIHHAR IEDFLERRLQTQVFKLGLAKSIHHARVLIR QVFKLGLAKSIHHARVLIRQRHIRVRKQVV K L G A R V 2 1 0 0 0 0 0 1 2 1 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1201.7044 P46781 P46781 117 127 RPS9 40S ribosomal protein S9 yes yes 3 0.046222 76.143 By matching By MS/MS 6.67 0.471 1 2 2 1 5184200 0 2503800 2680400 7908 831 8236 33799;33800;33801 28423 28423 0 0 1419300 475620 LGLAPQIQDLYGK RCIYCIHALSLYLFKLGLAPQIQDLYGKVD FKLGLAPQIQDLYGKVDFTEEEINNMKTEL K L G G K V 1 0 0 1 0 2 0 2 0 1 3 1 0 0 1 0 0 0 1 0 0 0 13 0 1414.782 P46940 P46940 162 174 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.0071451 94.409 By MS/MS By MS/MS 1 0 2 1 1 9362700 0 2706300 6656300 7909 835 8237 33802;33803 28424;28425 28425 2 0 1322800 1434200 LGLDFPNLPYLIDGTHK APDYDRSQWLNEKFKLGLDFPNLPYLIDGT LDFPNLPYLIDGTHKITQSNAILRYIARKH K L G H K I 0 0 1 2 0 0 0 2 1 1 4 1 0 1 2 0 1 0 1 0 0 0 17 0 1912.0094 P28161 P28161 53 69 GSTM2 Glutathione S-transferase Mu 2 yes yes 3 0.00030703 88.992 By MS/MS 7 0 1 1 5961300 0 0 5961300 7910 687 8238 33804 28426 28426 1 0 0 1057800 LGLDYEER LSRPNAQELPSMYQRLGLDYEERVLPSIVN LPSMYQRLGLDYEERVLPSIVNEVLKSVVA R L G E R V 0 1 0 1 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0 0 0 8 0 993.47673 Q99623 Q99623 124 131 PHB2 Prohibitin-2 yes yes 2 0.01394 89.046 By MS/MS 6 0 1 1 13739000 0 0 13739000 7911 1855 8239 33805 28427 28427 1 0 0 2055500 LGLEALAANHQQLFTDGR ALETERVRANARALRLGLEALAANHQQLFT EALAANHQQLFTDGRSWGSFTVLDNSAWYQ R L G G R S 3 1 1 1 0 2 1 2 1 0 4 0 0 1 0 0 1 0 0 0 0 0 18 0 1953.0068 Q9Y2Z4 Q9Y2Z4 146 163 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 3 0.00029373 78.661 By MS/MS 5 0 1 1 8646300 0 0 8646300 7912 2255 8240 33806 28428 28428 1 0 0 1206000 LGLEFFDQPAVPLAR YRSIYFSSPKGHLTRLGLEFFDQPAVPLAR LGLEFFDQPAVPLARAFLGQVLVRRLPNGT R L G A R A 2 1 0 1 0 1 1 1 0 0 3 0 0 2 2 0 0 0 0 1 0 0 15 0 1671.8984 P29372 P29372 86 100 MPG DNA-3-methyladenine glycosylase yes yes 2;3 2.3598E-11 174.98 By MS/MS By MS/MS 6 0 4 1 3 89158000 0 7139300 82019000 7913 698 8241 33807;33808;33809;33810 28429;28430;28431 28429 3 0 2471400 12271000 LGLENAEALIR CFGSEGGTYYIKEQKLGLENAEALIRLIED KEQKLGLENAEALIRLIEDGRGCEVIQEIK K L G I R L 2 1 1 0 0 0 2 1 0 1 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1197.6717 P10155 P10155 53 63 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 2 0.00023442 135.71 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 7246500 0 7246500 0 7914 507 8242 33811;33812 28432;28433 28432 2 0 2404900 0 LGLGEGAEEK SEGKAYSLGRAEYGRLGLGEGAEEKSIPTL AEYGRLGLGEGAEEKSIPTLISRLPAVSSV R L G E K S 1 0 0 0 0 0 3 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 0 1001.5029 P18754 P18754 326 335 RCC1 Regulator of chromosome condensation yes yes 2 0.002475 105.52 By MS/MS 6 0.816 1 1 1 3 246300000 0 0 246300000 7915 599 8243 33813;33814;33815 28434;28435 28434 2 0 0 34692000 LGLGGNAPVSIPQQSQSVK VKSVGQGYSVGQSMRLGLGGNAPVSIPQQS GNAPVSIPQQSQSVKQLLPSGNGRSYGLGS R L G V K Q 1 0 1 0 0 3 0 3 0 1 2 1 0 0 2 3 0 0 0 2 0 0 19 0 1879.0163 Q9H2P0 Q9H2P0 349 367 ADNP Activity-dependent neuroprotector homeobox protein yes yes 2 1.373E-08 115.12 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 26200000 0 3557300 22643000 7916 1975 8244 33816;33817;33818;33819 28436;28437 28436 2 0 1601900 4936100 LGLGTAYIHGMK IYGSDRILLRPREKKLGLGTAYIHGMKHAT EKKLGLGTAYIHGMKHATGNYIIIMDADLS K L G M K H 1 0 0 0 0 0 0 3 1 1 2 1 1 0 0 0 1 0 1 0 0 0 12 0 1259.6696 O60762 O60762 96 107 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 3 0.01478 66.262 By MS/MS By MS/MS 7 0 2 1 1 22464000 0 2859200 19604000 7917 231 8245 33820;33821 28438;28439 28439 2 0 1641800 3478700 LGLHQQGSEPSYLDR AEHGDEPRHGGLTLRLGLHQQGSEPSYLDR LGLHQQGSEPSYLDRTEQLQAVLCSTMEKS R L G D R T 0 1 0 1 0 2 1 2 1 0 3 0 0 0 1 2 0 0 1 0 0 0 15 0 1698.8325 Q9BV38 Q9BV38 361 375 WDR18 WD repeat-containing protein 18 yes yes 2;3 1.684E-07 169.52 By matching By MS/MS 4.5 0.5 2 2 1 3 81816000 3292200 0 78524000 7918 1910 8246 33822;33823;33824;33825 28440;28441;28442 28441 3 2568500 0 11052000 LGLIEWLENTVTLK ALQLRTYSVVPMTSRLGLIEWLENTVTLKD RLGLIEWLENTVTLKDLLLNTMSQEEKAAY R L G L K D 0 0 1 0 0 0 2 1 0 1 4 1 0 0 0 0 2 1 0 1 0 0 14 0 1627.9185 P78527 P78527 3800 3813 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00039358 133.07 By MS/MS 1.5 0.5 1 1 2 3640700 0 0 3640700 7919 1089 8247 33826;33827 28443 28443 1 0 0 818630 LGLIPLISDDIVDK DANSSVLHDEFIAHRLGLIPLISDDIVDKL RLGLIPLISDDIVDKLQYSRDCTCEEFCPE R L G D K L 0 0 0 3 0 0 0 1 0 3 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1509.8654 P19387 P19387 68 81 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 2 0.041185 66.262 By MS/MS 6 0 1 1 9353700 0 0 9353700 7920 606 8248 33828 28444 28444 1 0 0 1399400 LGLKSLVSK AAAGYDVEKNNSRIKLGLKSLVSKGTLVQT NNSRIKLGLKSLVSKGTLVQTKGTGASGSF K L G S K G 0 0 0 0 0 0 0 1 0 0 3 2 0 0 0 2 0 0 0 1 0 0 9 1 943.60662 P10412;P16401;P16402;P16403 P16403 82 90 HIST1H1E;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.5;Histone H1.3;Histone H1.2 no no 2 0.0050659 115.13 By MS/MS 6 0.816 1 1 1 3 50288000 0 0 50288000 7921 509;578;577 8249 33829;33830;33831 28445;28446;28447 28445 3 0 0 7615800 LGLLDTQTSQVLTAVDKDNK DPVHGVHLPQAAACRLGLLDTQTSQVLTAV TQTSQVLTAVDKDNKFFFDPSARDQVTYQQ R L G N K F 1 0 1 3 0 2 0 1 0 0 4 2 0 0 0 1 3 0 0 2 0 0 20 1 2158.1481 P58107 P58107 1382 1401 EPPK1 Epiplakin yes yes 3 7.225E-08 105.79 By MS/MS 1 0 1 1 5928700 0 5928700 0 7922 958 8250 33832 28448 28448 1 0 2897800 0 LGLLEALLK EKEEEKVEKPPDNQKLGLLEALLKIGDWQH PPDNQKLGLLEALLKIGDWQHAQNIMDQMP K L G L K I 1 0 0 0 0 0 1 1 0 0 5 1 0 0 0 0 0 0 0 0 0 0 9 0 968.62702 Q8NI27 Q8NI27 346 354 THOC2 THO complex subunit 2 yes yes 2 0.00046016 119.27 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 31652000 50179 6868600 24733000 7923 1647 8251 33833;33834;33835;33836;33837;33838 28449;28450;28451 28450 3 50179 3115900 5373800 LGLLGALMAEDGVR PCCRFDSPRGPPPPRLGLLGALMAEDGVRG RLGLLGALMAEDGVRGSPPVPSGPPMEEDG R L G V R G 2 1 0 1 0 0 1 3 0 0 4 0 1 0 0 0 0 0 0 1 0 0 14 0 1413.765 Q9H4L4 Q9H4L4 197 210 SENP3 Sentrin-specific protease 3 yes yes 2 3.6648E-11 174.98 By matching By MS/MS 3.33 0.471 2 1 1 2 17350000 0 285610 17065000 7924 1983 8252 33839;33840;33841 28452;28453 28452 2 0 121750 3157700 LGLLGLANSLAIEGR GIYGNFGQANYSAAKLGLLGLANSLAIEGR LGLLGLANSLAIEGRKSNIHCNTIAPNAGS K L G G R K 2 1 1 0 0 0 1 3 0 1 5 0 0 0 0 1 0 0 0 0 0 0 15 0 1495.8722 P51659 P51659 169 183 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 2 0.00044181 113.22 By MS/MS By MS/MS 4.5 1.5 1 1 1 1 3457600 0 713630 2743900 7925 898 8253 33842;33843 28454;28455 28455 2 0 304220 410520 LGLLGLPAPK SYVKQMERESREHLRLGLLGLPAPKNDFEI REHLRLGLLGLPAPKNDFEIVLPENAEKEL R L G P K N 1 0 0 0 0 0 0 2 0 0 4 1 0 0 2 0 0 0 0 0 0 0 10 0 977.62735 Q99459 Q99459 478 487 CDC5L Cell division cycle 5-like protein yes yes 2 0.0048297 98.299 By MS/MS By MS/MS 3 1.31 1 2 1 2 1 2 5 73837000 0 31430000 42407000 7926 1843 8254 33844;33845;33846;33847;33848;33849;33850 28456;28457;28458;28459;28460 28456 5 0 12883000 8293500 LGLPGDEVDNKVK RAPLKSVGPDFGKKRLGLPGDEVDNKVKGA KRLGLPGDEVDNKVKGAAGRTDLLRLRRRF R L G V K G 0 0 1 2 0 0 1 2 0 0 2 2 0 0 1 0 0 0 0 2 0 0 13 1 1382.7405 P78527 P78527 2705 2717 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.029985 55.899 By MS/MS 1 0 1 1 5025600 0 5025600 0 7927 1089 8255 33851 28461 28461 1 0 2456400 0 LGLPGIPR MSSAQIVSATAIHNKLGLPGIPRPTFPGAP ATAIHNKLGLPGIPRPTFPGAPGFWPGMIQ K L G P R P 0 1 0 0 0 0 0 2 0 1 2 0 0 0 2 0 0 0 0 0 0 0 8 0 821.51232 P28347 P28347 140 147 TEAD1 Transcriptional enhancer factor TEF-1 yes yes 2 0.013338 89.673 By MS/MS 4 0 1 1 4731200 0 0 4731200 7928 692 8256 33852 28462 28462 1 0 0 772750 LGLPPLTPEQQEALQK TDSIKMENGQSTAAKLGLPPLTPEQQEALQ GLPPLTPEQQEALQKAKKYAMEQSIKSVLV K L G Q K A 1 0 0 0 0 3 2 1 0 0 4 1 0 0 3 0 1 0 0 0 0 0 16 0 1760.9672 Q9UHX1 Q9UHX1 54 69 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 5.0365E-05 112.7 By MS/MS 4 0.816 1 1 1 3 38335000 0 0 38335000 7929 2158 8257 33853;33854;33855 28463;28464 28464 2 0 0 6681500 LGLQYSQGLVSGSNAR FMSIPSSVIHPAMVRLGLQYSQGLVSGSNA GLQYSQGLVSGSNARCIALLRALQQVIQDY R L G A R C 1 1 1 0 0 2 0 3 0 0 3 0 0 0 0 3 0 0 1 1 0 0 16 0 1648.8533 Q9UI10 Q9UI10 210 225 EIF2B4 Translation initiation factor eIF-2B subunit delta yes yes 2 7.3246E-05 107.97 By MS/MS 4 0 1 1 6576300 0 6576300 0 7930 2160 8258 33856 28465 28465 1 0 2182400 0 LGLSVFTHHR VGRVAMSREDKEAAKLGLSVFTHHRVESGG KEAAKLGLSVFTHHRVESGGPGTSAASARR K L G H R V 0 1 0 0 0 0 0 1 2 0 2 0 0 1 0 1 1 0 0 1 0 0 10 0 1165.6356 Q9BU76 Q9BU76 143 152 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 0.018256 83.998 By MS/MS 6 0 1 1 3618400 0 0 3618400 7931 1904 8259 33857 28466 28466 1 0 0 541360 LGLTMQYPEGYLEALANR EPGPWTKEGKDRIKKLGLTMQYPEGYLEAL TMQYPEGYLEALANREREKENSKREEEEQQ K L G N R E 2 1 1 0 0 1 2 2 0 0 4 0 1 0 1 0 1 0 2 0 0 0 18 0 2038.0194 Q96T88 Q96T88 601 618 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2;3 9.8222E-10 160.69 By matching By MS/MS 2.5 0.5 2 2 1 3 14015000 0 796380 13219000 7932 1841 8260 33858;33859;33860;33861 28467;28468 28467 2 0 358620 2575500 LGLVSPESMDNYSHFHELR EEAMKEVLSVQKQMKLGLVSPESMDNYSHF SPESMDNYSHFHELRVTEEEINVLKQDLQN K L G L R V 0 1 1 1 0 0 2 1 2 0 3 0 1 1 1 3 0 0 1 1 0 0 19 0 2230.0477 Q9P0K7 Q9P0K7 508 526 RAI14 Ankycorbin yes yes 3 0.0051128 58.997 By MS/MS 2 0 1 1 5869600 0 0 5869600 7933 2115 8261 33862 28469 28469 0 0 0 1326400 LGMDGYR GKVFERCELARTLKRLGMDGYRGISLANWM ELARTLKRLGMDGYRGISLANWMCLAKWES R L G Y R G 0 1 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 7 0 810.36942 P61626 P61626 33 39 LYZ Lysozyme C yes yes 2 0.00010017 159.75 By MS/MS By matching 6.25 3.11 1 1 1 1 1 1 1 1 1 3 11 1 1311200000 1309900000 0 1311700 7934 997 8262;8263 33863;33864;33865;33866;33867;33868;33869;33870;33871;33872;33873;33874 28470;28471;28472;28473;28474;28475;28476;28477;28478;28479;28480;28481 28478 12 1583000000 0 2868700 LGMFNIQHCK HVDQVTTVKVPMMKRLGMFNIQHCKKLSSW PMMKRLGMFNIQHCKKLSSWVLLMKYLGNA R L G C K K 0 0 1 0 1 1 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 10 0 1246.5951 P01009 P01009 248 257 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2;3 0.00053983 134.81 By MS/MS 9 0 2 2 34413000 34413000 0 0 7935 367 8264 33875;33876 28482;28483 28482 2 19316000 0 0 LGMSADPDNEDATDKVNK KTPKKAQVSKSLKERLGMSADPDNEDATDK SADPDNEDATDKVNKVGEIHVKTLEEILLE R L G N K V 2 0 2 4 0 0 1 1 0 0 1 2 1 0 1 1 1 0 0 1 0 0 18 1 1918.8578 O75152 O75152 335 352 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 3 0.0026812 64.275 By MS/MS 2 0.816 1 1 1 3 10510000 0 0 10510000 7936 244 8265 33877;33878;33879 28484 28484 1 0 0 2253300 LGMVEWIEPPKR SLYKFEGEDYREKQKLGMVEWIEPPKRERK KQKLGMVEWIEPPKRERKANYAVDAYFREA K L G K R E 0 1 0 0 0 0 2 1 0 1 1 1 1 0 2 0 0 1 0 1 0 0 12 1 1453.7752 P28370 P28370 740 751 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2;3 0.0025742 92.051 By matching By MS/MS 1.75 0.433 1 3 1 3 23540000 3944600 0 19596000 7937 693 8266 33880;33881;33882;33883 28485;28486;28487 28486 3 4752800 0 4399100 LGNGINIIVATPGR GLIMGGSNRSAEAQKLGNGINIIVATPGRL KLGNGINIIVATPGRLLDHMQNTPGFMYKN K L G G R L 1 1 2 0 0 0 0 3 0 3 1 0 0 0 1 0 1 0 0 1 0 0 14 0 1393.8041 Q9NVP1 Q9NVP1 298 311 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.00062775 142.19 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 4 40197000 0 13252000 26945000 7938 2069 8267 33884;33885;33886;33887;33888 28488;28489 28488 2 0 5649300 5241300 LGNIEFKPESR HEAESVLAVVAAVLKLGNIEFKPESRVNGL AVLKLGNIEFKPESRVNGLDESKIKDKNEL K L G S R V 0 1 1 0 0 0 2 1 0 1 1 1 0 1 1 1 0 0 0 0 0 0 11 1 1288.6776 O43795 O43795 281 291 MYO1B Unconventional myosin-Ib yes yes 3 0.024172 63.727 By MS/MS 2 0 1 1 7250500 0 0 7250500 7939 212 8268 33889 28490 28490 1 0 0 1638500 LGNVNIDIIHR HKTENTYRFLTFAERLGNVNIDIIHRIDRT FAERLGNVNIDIIHRIDRTASYEEEVETYF R L G H R I 0 1 2 1 0 0 0 1 1 3 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1262.7095 O75691 O75691 23 33 UTP20 Small subunit processome component 20 homolog yes yes 3 0.014695 67.153 By MS/MS 1 0 1 1 1976200 0 1976200 0 7940 280 8269 33890 28491 28491 1 0 965950 0 LGPASAADTGSEAKPGALAEGAAEPEPQR DCVERNERLELEAYRLGPASAADTGSEAKP PGALAEGAAEPEPQRHAGRIAFTDADDVAI R L G Q R H 8 1 0 1 0 1 4 4 0 0 2 1 0 0 4 2 1 0 0 0 0 0 29 1 2747.3362 Q9NYB0 Q9NYB0 101 129 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 yes yes 3 2.1524E-15 95.212 By MS/MS 4 0 1 1 8533900 0 0 8533900 7941 2096 8270 33891 28492 28492 1 0 0 1393900 LGPLAGDVEDHLSFLEK FNKAMVQQLDTLRQKLGPLAGDVEDHLSFL PLAGDVEDHLSFLEKDLRDKVSSFFNTLKE K L G E K D 1 0 0 2 0 0 2 2 1 0 4 1 0 1 1 1 0 0 0 1 0 0 17 0 1838.9414 CON__Q32PJ2 CON__Q32PJ2 329 345 yes yes 2;3 1.2431E-05 139.46 By MS/MS By MS/MS 6 1.15 3 1 1 1 1 5 66793000 4863000 0 61930000 + 7942 81 8271 33892;33893;33894;33895;33896;33897 28493;28494;28495;28496 28495 4 3895900 0 9154500 LGPLLDILADSR LFPLLLRLLDPTSSRLGPLLDILADSRHLW SSRLGPLLDILADSRHLWSPFGLRSLAASS R L G S R H 1 1 0 2 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 0 0 0 12 0 1281.7293 Q13724 Q13724 709 720 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2 0.017555 87.789 By MS/MS 2.5 0.5 1 1 2 10313000 0 0 10313000 7943 1266 8272 33898;33899 28497;28498 28498 0 0 0 2159800 LGPLLEQEIPQSVPGVQTLLGAGR YRHLAPDHLLQICHRLGPLLEQEIPQSVPG PQSVPGVQTLLGAGRQSLLRTNKSCKHVVW R L G G R Q 1 1 0 0 0 3 2 4 0 1 5 0 0 0 3 1 1 0 0 2 0 0 24 0 2471.3748 Q8WWQ0 Q8WWQ0 82 105 PHIP PH-interacting protein yes yes 3 3.5951E-10 89.946 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 18463000 0 6050500 12413000 7944 1690 8273 33900;33901;33902;33903 28499;28500 28500 2 0 2814300 2552000 LGPQASSQVVMPPLVR IPPPLVRGGQQASSKLGPQASSQVVMPPLV GPQASSQVVMPPLVRGAQQIHSIRQHSSTG K L G V R G 1 1 0 0 0 2 0 1 0 0 2 0 1 0 3 2 0 0 0 3 0 0 16 0 1677.9236 Q86YP4 Q86YP4 234 249 GATAD2A Transcriptional repressor p66-alpha yes yes 2 6.8811E-05 108.56 By MS/MS 3 0 1 1 5166500 0 5166500 0 7945 1563 8274 33904 28501 28501 1 0 2202500 0 LGPSVVGLAR RGYVGSIQPHGVFFRLGPSVVGLARYSHVS GVFFRLGPSVVGLARYSHVSQHSPSKKALY R L G A R Y 1 1 0 0 0 0 0 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 967.58147 Q14690 Q14690 1343 1352 PDCD11 Protein RRP5 homolog yes yes 2 0.00056525 134.3 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 45715000 1677800 16474000 27564000 7946 1314 8275 33905;33906;33907;33908;33909 28502;28503 28503 2 1677800 7897700 5882500 LGPYAEELR VSQKIGDNVRELQQRLGPYAEELRTQVDTQ RELQQRLGPYAEELRTQVDTQAQQLRRQLT R L G L R T 1 1 0 0 0 0 2 1 0 0 2 0 0 0 1 0 0 0 1 0 0 0 9 0 1046.5397 CON__Q32PJ2 CON__Q32PJ2 135 143 yes yes 2 7.4866E-05 110.03 By matching By MS/MS 6.6 1.36 1 2 1 1 1 4 78587000 7796300 0 70791000 + 7947 81 8276 33910;33911;33912;33913;33914 28504;28505;28506 28504 2 10381000 0 11921000 LGQAELVVIDEAAAIPLPLVK HRQTIQYIHPADAVKLGQAELVVIDEAAAI VVIDEAAAIPLPLVKSLLGPYLVFMASTIN K L G V K S 4 0 0 1 0 1 2 1 0 2 4 1 0 0 2 0 0 0 0 3 0 0 21 0 2158.2613 Q9H0A0 Q9H0A0 379 399 NAT10 N-acetyltransferase 10 yes yes 2;3 1.0866E-13 128.9 By MS/MS By MS/MS 2.25 0.968 2 3 2 1 1 7 39403000 0 585490 38818000 7948 1959 8277 33915;33916;33917;33918;33919;33920;33921;33922 28507;28508;28509;28510;28511 28511 5 0 263650 8572500 LGQALTEVYAK DSISETVILRGEPEKLGQALTEVYAKANSF EPEKLGQALTEVYAKANSFTVSSVAAPSWL K L G A K A 2 0 0 0 0 1 1 1 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 0 1191.6499 Q00341 Q00341 350 360 HDLBP Vigilin yes yes 2 0.048511 74.165 By matching By MS/MS 2 0 2 1 1 10826000 4285300 6540300 0 7949 1122 8278 33923;33924 28512 28512 1 5163200 2945200 0 LGQGVLVQVSPSLVK DGAVSLHTRSLKYGKLGQGVLVQVSPSLVK LGQGVLVQVSPSLVKRQKTHFHDLPCGASV K L G V K R 0 0 0 0 0 2 0 2 0 0 3 1 0 0 1 2 0 0 0 4 0 0 15 0 1522.9083 Q13868 Q13868 166 180 EXOSC2 Exosome complex component RRP4 yes yes 2 0.0017317 92.925 By matching By MS/MS By MS/MS 6 0 3 1 1 1 27783000 837310 6790200 20156000 7950 1273 8279 33925;33926;33927 28513;28514 28513 2 1114900 2350500 3015500 LGQVMETLTSAEK SALQLEQQVKELQEKLGQVMETLTSAEKEP EKLGQVMETLTSAEKEPEAAVPASGTGGES K L G E K E 1 0 0 0 0 1 2 1 0 0 2 1 1 0 0 1 2 0 0 1 0 0 13 0 1405.7123 A8MQT2;A7E2F4 A8MQT2 390 402 GOLGA8B;GOLGA8A Golgin subfamily A member 8B;Golgin subfamily A member 8A yes no 2 0.028113 61.65 By MS/MS 9.5 0.5 1 1 2 17523000 0 0 17523000 7951 18 8280 33928;33929 28515 28515 4 0 0 0 21486000 LGSALSWSIR SICKILAMKAVRNNRLGSALSWSIRAKDAA VRNNRLGSALSWSIRAKDAAFATLVSDRFL R L G I R A 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 3 0 1 0 0 0 0 10 0 1088.5978 Q9BW27 Q9BW27 483 492 NUP85 Nuclear pore complex protein Nup85 yes yes 2 0.00056515 116.37 By MS/MS 3 0 1 1 7908100 0 0 7908100 7952 1920 8281 33930 28516 28516 1 0 0 1533800 LGSDMEDLR TQARVSKELQAAQARLGSDMEDLRNRLAQY QAAQARLGSDMEDLRNRLAQYRSEVQAMLG R L G L R N 0 1 0 2 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 9 0 1034.4703 CON__Q03247 CON__Q03247 121 129 yes yes 2 1.0398E-31 198.92 By MS/MS By MS/MS By MS/MS 7.46 2.02 1 2 2 1 2 2 3 3 1 9 464640000 42259000 2893000 419490000 + 7953 72 8282;8283 33931;33932;33933;33934;33935;33936;33937;33938;33939;33940;33941;33942;33943 28517;28518;28519;28520;28521;28522;28523;28524;28525;28526;28527 28525 11 36606000 14636000 119640000 LGSDMEDLRNR TQARVSKELQAAQARLGSDMEDLRNRLAQY AQARLGSDMEDLRNRLAQYRSEVQAMLGQS R L G N R L 0 2 1 2 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 0 0 0 11 1 1304.6143 CON__Q03247 CON__Q03247 121 131 yes yes 3 0.056949 48.741 By MS/MS 6 0 1 1 2058700 0 2058700 0 + 7954 72 8284 33944 28528 28528 1 0 712660 0 LGSESQYSPTPLLK IDAVFHGAVWPQISRLGSESQYSPTPLLKL RLGSESQYSPTPLLKLISIWSRNARYFPLL R L G L K L 0 0 0 0 0 1 1 1 0 0 3 1 0 0 2 3 1 0 1 0 0 0 14 0 1518.793 O75691 O75691 1191 1204 UTP20 Small subunit processome component 20 homolog yes yes 2 0.056409 63.164 By MS/MS 1 0 1 1 5130400 0 5130400 0 7955 280 8285 33945 28529 28529 1 0 2507700 0 LGSFGSITR DPFPAVFGDFLGRERLGSFGSITRQQEGEA FLGRERLGSFGSITRQQEGEASSQDMTAQV R L G T R Q 0 1 0 0 0 0 0 2 0 1 1 0 0 1 0 2 1 0 0 0 0 0 9 0 936.50288 Q14315 Q14315 2231 2239 FLNC Filamin-C yes yes 2 0.0026808 102.95 By MS/MS 1 0 1 1 4905000 0 4905000 0 7956 1298 8286 33946 28530 28530 1 0 2397500 0 LGSLVDEFK AVDLTLPKVEAMNKRLGSLVDEFKELVYPP EAMNKRLGSLVDEFKELVYPPDYNPEGKVT R L G F K E 0 0 0 1 0 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1006.5335 P12956 P12956 518 526 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00063684 128.61 By MS/MS By MS/MS 4 1.73 2 2 1 1 1 1 2 6 95086000 0 12296000 82790000 7957 541 8287 33947;33948;33949;33950;33951;33952;33953;33954 28531;28532;28533;28534 28531 4 0 5264100 15723000 LGSLVDEFKELVYPPDYNPEGK AVDLTLPKVEAMNKRLGSLVDEFKELVYPP FKELVYPPDYNPEGKVTKRKHDNEGSGSKR R L G G K V 0 0 1 2 0 0 3 2 0 0 3 2 0 1 3 1 0 0 2 2 0 0 22 1 2508.2424 P12956 P12956 518 539 XRCC6 X-ray repair cross-complementing protein 6 yes yes 3 0.00069798 64.522 By MS/MS 3 0 1 1 2972800 0 0 2972800 7958 541 8288 33955 28535 28535 1 0 0 576590 LGSPDYGNSALLSLPGYRPTTR QASLRATSSTQSLARLGSPDYGNSALLSLP NSALLSLPGYRPTTRSSARRSQAGVSSGAP R L G T R S 1 2 1 1 0 0 0 3 0 0 4 0 0 0 3 3 2 0 2 0 0 0 22 1 2334.1968 Q14980 Q14980 1860 1881 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 9.8782E-21 150.98 By MS/MS By MS/MS 4.43 2.26 2 2 2 1 3 4 133660000 0 34506000 99150000 7959 1327 8289 33956;33957;33958;33959;33960;33961;33962 28536;28537;28538;28539;28540;28541 28539 6 0 14403000 18953000 LGSTEVASNVPK APGMNTIDQGMAALKLGSTEVASNVPKVVG ALKLGSTEVASNVPKVVGSAVGSGSITSNI K L G P K V 1 0 1 0 0 0 1 1 0 0 1 1 0 0 1 2 1 0 0 2 0 0 12 0 1200.635 Q9Y5A9 Q9Y5A9 194 205 YTHDF2 YTH domain-containing family protein 2 yes yes 2 0.043074 74.944 By MS/MS By matching 3.5 0.5 1 1 1 1 8075100 0 4427800 3647400 7960 2294 8290 33963;33964 28542 28542 1 0 1887600 595730 LGSTVFVANLDYK PNIPNEIIHALQAGRLGSTVFVANLDYKVG GRLGSTVFVANLDYKVGWKKLKEVFSMAGV R L G Y K V 1 0 1 1 0 0 0 1 0 0 2 1 0 1 0 1 1 0 1 2 0 0 13 0 1425.7504 P52272 P52272 202 214 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00033196 143.24 By MS/MS By MS/MS 3.57 1.76 1 1 2 1 2 3 4 304760000 0 100280000 204480000 7961 902 8291 33965;33966;33967;33968;33969;33970;33971 28543;28544;28545;28546;28547;28548 28543 6 0 39228000 39878000 LGSWLAIR KGEVFRVVDTLYNGKLGSWLAIRIGKNHKE DTLYNGKLGSWLAIRIGKNHKEVERGIIPN K L G I R I 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 0 1 0 0 0 0 8 0 914.53379 Q07157 Q07157 554 561 TJP1 Tight junction protein ZO-1 yes yes 2 5.6115E-09 168.74 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 6420000 0 1257000 5162900 7962 1177 8292 33972;33973;33974 28549;28550 28550 2 0 614420 1133900 LGTEPTSETQDELQR PEMEDLPSKGVQEERLGTEPTSETQDELQR LGTEPTSETQDELQRLLGLLRDQDPLSEEQ R L G Q R L 0 1 0 1 0 2 3 1 0 0 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1702.801 O15381 O15381 516 530 NVL Nuclear valosin-containing protein-like yes yes 2 4.967E-64 174.1 By MS/MS 2 0 1 1 0 0 0 0 7963 180 8293 33975 28551 28551 1 0 0 0 LGTLSALDILIK PILASFLRKNQRALKLGTLSALDILIKNYS ALKLGTLSALDILIKNYSDSLTAAMIDAVL K L G I K N 1 0 0 1 0 0 0 1 0 2 4 1 0 0 0 1 1 0 0 0 0 0 12 0 1255.7751 Q86VP6 Q86VP6 668 679 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 2 0.0015196 112.36 By matching By MS/MS 2.33 0.471 2 1 1 2 4791600 680250 0 4111300 7964 1554 8294 33976;33977;33978 28552 28552 1 819620 0 906620 LGTLSPAFSTR FYIDYGNREVLPSTRLGTLSPAFSTRVLPA PSTRLGTLSPAFSTRVLPAQATEYAFAFIQ R L G T R V 1 1 0 0 0 0 0 1 0 0 2 0 0 1 1 2 2 0 0 0 0 0 11 0 1148.619 Q7KZF4 Q7KZF4 777 787 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0044793 102.62 By MS/MS 2 0 1 1 34508000 0 34508000 0 7965 1518 8295 33979 28553 28553 1 0 15540000 0 LGTQEYLQQLESHMK KSCQAMFQQINDSFRLGTQEYLQQLESHMK LGTQEYLQQLESHMKSRKAREQEAREPVLA R L G M K S 0 0 0 0 0 3 2 1 1 0 3 1 1 0 0 1 1 0 1 0 0 0 15 0 1803.8825 Q6P2E9 Q6P2E9 1143 1157 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 3 0.0018425 76.391 By MS/MS 1.5 0.5 1 1 2 7141900 0 7141900 0 7966 1489 8296 33980;33981 28554 28554 1 0 3274900 0 LGVAGQWR PMEINPEMLNKVLSRLGVAGQWRFVDVLGL LNKVLSRLGVAGQWRFVDVLGLEEESLGSV R L G W R F 1 1 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 8 0 885.48209 P09936 P09936 20 27 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 2 0.00028693 132.94 By MS/MS 7.67 1.7 1 1 1 3 20681000 0 0 20681000 7967 494 8297 33982;33983;33984 28555;28556 28555 2 0 0 13511000 LGVPFQVLVATHAGLYR PAEEFKAKVEAVVEKLGVPFQVLVATHAGL VPFQVLVATHAGLYRKPVTGMWDHLQEQAN K L G Y R K 2 1 0 0 0 1 0 2 1 0 3 0 0 1 1 0 1 0 1 3 0 0 17 0 1840.0359 Q96T60 Q96T60 243 259 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 3 1.3558E-06 130.72 By MS/MS 2.5 1.12 1 1 1 1 4 21546000 0 0 21546000 7968 1840 8298 33985;33986;33987;33988 28557;28558 28558 2 0 0 3867100 LGVTNTIISHYDGR ANAERLKSVVGNLHRLGVTNTIISHYDGRQ RLGVTNTIISHYDGRQFPKVVGGFDRVLLD R L G G R Q 0 1 1 1 0 0 0 2 1 2 1 0 0 0 0 1 2 0 1 1 0 0 14 0 1544.7947 P46087 P46087 432 445 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2;3 0.00030813 124.42 By MS/MS By MS/MS 2.33 0.943 2 3 3 1 2 7 141710000 0 30835000 110880000 7969 824 8299 33989;33990;33991;33992;33993;33994;33995;33996;33997 28559;28560;28561;28562 28559 4 0 13676000 23986000 LGWSQPLGNLQAPLGYDK FEITVDEMPPDTAARLGWSQPLGNLQAPLG SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQ R L G D K F 1 0 1 1 0 2 0 3 0 0 4 1 0 0 2 1 0 1 1 0 0 0 18 0 1956.0105 Q9UBL3 Q9UBL3 438 455 ASH2L Set1/Ash2 histone methyltransferase complex subunit ASH2 yes yes 2 1.3624E-05 106.54 By MS/MS 3 0 1 1 9898700 0 0 9898700 7970 2132 8300 33998 28563 28563 1 0 0 1919900 LHAVLKPFLLR FDTKNCLGDQKLVERLHAVLKPFLLRRIKT LVERLHAVLKPFLLRRIKTDVEKSLPPKKE R L H L R R 1 1 0 0 0 0 0 0 1 0 4 1 0 1 1 0 0 0 0 1 0 0 11 1 1305.8285 P28370 P28370 387 397 SMARCA1 Probable global transcription activator SNF2L1 yes yes 3 0.00018113 116.52 By matching By MS/MS 1.33 0.471 2 1 1 2 18475000 0 653010 17822000 7971 693 8301 33999;34000;34001 28564;28565 28565 2 0 319180 3977000 LHDETLTYLNQGQSYEIR PFQYVLCAATSPAVKLHDETLTYLNQGQSY ETLTYLNQGQSYEIRMLDNRKLGELPEING K L H I R M 0 1 1 1 0 2 2 1 1 1 3 0 0 0 0 1 2 0 2 0 0 0 18 0 2179.0546 Q12800;Q9NZI7 Q12800 81 98 TFCP2;UBP1 Alpha-globin transcription factor CP2;Upstream-binding protein 1 no no 2;3 1.6357E-261 332.41 By matching By MS/MS By MS/MS 3.6 0.49 2 3 1 1 3 67117000 3481200 9686400 53950000 7972 1200;2103 8302 34002;34003;34004;34005;34006 28566;28567;28568;28569 28569 4 4016500 3214600 8986400 LHDINAQMVEDQGFLDSLR EDPYVRKTAAVCVAKLHDINAQMVEDQGFL NAQMVEDQGFLDSLRDLIADSNPMVVANAV K L H L R D 1 1 1 3 0 2 1 1 1 1 3 0 1 1 0 1 0 0 0 1 0 0 19 0 2200.0583 P63010 P63010 148 166 AP2B1 AP-2 complex subunit beta yes yes 3 1.1616E-09 128.14 By MS/MS 2 0 1 1 10514000 0 0 10514000 7973 1057 8303 34007 28570 28570 1 0 0 2375900 LHDLVLPLVMGVQQGEVLGSSPYTSSR ILMCGPLIKEETHRRLHDLVLPLVMGVQQG QQGEVLGSSPYTSSRCRRELYCLLLALLLA R L H S R C 0 1 0 1 0 2 1 3 1 0 5 0 1 0 2 4 1 0 1 4 0 0 27 0 2881.5008 Q8IZL8 Q8IZL8 548 574 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 2.5978E-38 138.54 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 56115000 0 32377000 23738000 7974 1596 8304 34008;34009;34010;34011 28571;28572;28573 28573 3 0 14580000 5179500 LHDLYWQAMK QQSLQQGAHSTGSSRLHDLYWQAMKTLGVQ TGSSRLHDLYWQAMKTLGVQRPKLEKKDAK R L H M K T 1 0 0 1 0 1 0 0 1 0 2 1 1 0 0 0 0 1 1 0 0 0 10 0 1303.6383 Q9BQG0 Q9BQG0 1131 1140 MYBBP1A Myb-binding protein 1A yes yes 2 0.0072111 93.143 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 14316000 0 0 14316000 7975 1885 8305 34012;34013 28574;28575 28575 2 0 0 3235100 LHDMLGPHMLR LEEFADIAKEDQIKKLHDMLGPHMLRRLKA QIKKLHDMLGPHMLRRLKADVFKNMPSKTE K L H L R R 0 1 0 1 0 0 0 1 2 0 3 0 2 0 1 0 0 0 0 0 0 0 11 0 1318.6638 Q14839 Q14839 946 956 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.0015125 94.616 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 52948000 0 6013700 46934000 7976 1321 8306 34014;34015;34016 28576;28577 28577 2 0 2939400 10182000 LHEEEIQELQAQIQEQHVQIDVDVSKPDLTAALR RKVESLQEEIAFLKKLHEEEIQELQAQIQE IDVDVSKPDLTAALRDVRQQYESVAAKNLQ K L H L R D 3 1 0 3 0 6 5 0 2 3 4 1 0 0 1 1 1 0 0 3 0 0 34 1 3922.0072 P08670 P08670 237 270 VIM Vimentin yes yes 4;5 4.7824E-70 174.46 By MS/MS 3.83 1.07 1 1 2 2 6 220250000 0 0 220250000 7977 476 8307 34017;34018;34019;34020;34021;34022 28578;28579;28580;28581;28582 28580 5 0 0 36148000 LHFFMPGFAPLTAR ADLRKLAVNMVPFPRLHFFMPGFAPLTARG RLHFFMPGFAPLTARGSQQYRALTVPELTQ R L H A R G 2 1 0 0 0 0 0 1 1 0 2 0 1 3 2 0 1 0 0 0 0 0 14 0 1603.8333 Q13509 Q13509 263 276 TUBB3 Tubulin beta-3 chain yes yes 3 0.0042367 72.891 By MS/MS 4.5 0.5 1 1 2 9436700 0 9436700 0 7978 1254 8308 34023;34024 28583;28584 28583 2 0 2631100 0 LHFFMPGFAPLTSR ADLRKLAVNMVPFPRLHFFMPGFAPLTSRG RLHFFMPGFAPLTSRGSQQYRALTVPELTQ R L H S R G 1 1 0 0 0 0 0 1 1 0 2 0 1 3 2 1 1 0 0 0 0 0 14 0 1619.8283 P07437;A6NNZ2;P68371;Q13885;Q9BVA1;P04350;Q3ZCM7;Q9BUF5 P68371 263 276 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 2;3 6.2197E-34 207.34 By MS/MS By MS/MS By MS/MS 4.65 1.95 5 5 5 14 14 10 5 3 2 3 33 27 7709100000 43494000 2977600000 4688000000 7979 1079;462;1274;414;1905;1415 8309;8310 34025;34026;34027;34028;34029;34030;34031;34032;34033;34034;34035;34036;34037;34038;34039;34040;34041;34042;34043;34044;34045;34046;34047;34048;34049;34050;34051;34052;34053;34054;34055;34056;34057;34058;34059;34060;34061;34062;34063;34064;34065;34066;34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083;34084;34085;34086;34087 28585;28586;28587;28588;28589;28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602;28603;28604;28605;28606;28607;28608;28609;28610;28611;28612;28613;28614;28615;28616;28617;28618;28619;28620;28621;28622;28623;28624;28625;28626;28627;28628;28629;28630;28631;28632;28633;28634;28635;28636;28637;28638;28639;28640;28641;28642;28643;28644;28645;28646;28647;28648;28649;28650;28651;28652;28653;28654;28655;28656;28657;28658;28659;28660;28661;28662;28663;28664;28665 28626 145 81 36172000 875710000 729730000 LHFHNLVK CQTGGVIAEILRGVRLHFHNLVKGLTDLSA EILRGVRLHFHNLVKGLTDLSACKAQLGLG R L H V K G 0 0 1 0 0 0 0 0 2 0 2 1 0 1 0 0 0 0 0 1 0 0 8 0 1006.5712 O00567 O00567 127 134 NOP56 Nucleolar protein 56 yes yes 2 0.00020606 139.27 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 50042000 0 16695000 33347000 7980 130 8311 34088;34089;34090;34091 28666;28667;28668 28666 3 0 6579300 6340900 LHFLMTGYTPLTTDQSVASVR NDLIGLIASLIPTPRLHFLMTGYTPLTTDQ GYTPLTTDQSVASVRKTTVLDVMRRLLQPK R L H V R K 1 1 0 1 0 1 0 1 1 0 3 0 1 1 1 2 4 0 1 2 0 0 21 0 2336.1835 Q9NRH3;P23258 Q9NRH3 266 286 TUBG2;TUBG1 Tubulin gamma-2 chain;Tubulin gamma-1 chain yes no 3 1.1253E-06 94.856 By MS/MS 5 0 1 1 19499000 0 19499000 0 7981 639 8312 34092 28669 28669 1 0 5026200 0 LHGLEMER ETVAQAALLTEREERLHGLEMERRRLHNQL LTEREERLHGLEMERRRLHNQLQELKGNIR R L H E R R 0 1 0 0 0 0 2 1 1 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 983.48585 Q9BW19 Q9BW19 290 297 KIFC1 Kinesin-like protein KIFC1 yes yes 2 0.066848 68.787 By MS/MS 3 0 1 1 5318500 0 0 5318500 7982 1919 8313 34093 28670 28670 1 0 0 1031500 LHGLPEQFLYGTATK KEWLTNFMEDRRQRRLHGLPEQFLYGTATK LHGLPEQFLYGTATKHLTYNDFINKELILF R L H T K H 1 0 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 15 0 1673.8777 Q02880 Q02880 698 712 TOP2B DNA topoisomerase 2-beta yes yes 2;3 2.4447E-05 161.48 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 43886000 0 4727200 39159000 7983 1150 8314 34094;34095;34096;34097;34098 28671;28672;28673;28674;28675 28673 5 0 2310600 8555100 LHGSVGGAQNLSALGALVSLSNAR NRSAPHLPGLMCLLRLHGSVGGAQNLSALG NLSALGALVSLSNARLSSIKTRFEGLCLLS R L H A R L 4 1 2 0 0 1 0 4 1 0 5 0 0 0 0 4 0 0 0 2 0 0 24 0 2291.2346 Q8IZL8 Q8IZL8 75 98 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 1.8845E-30 183.05 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 36477000 0 6617800 29859000 7984 1596 8315 34099;34100;34101 28676;28677;28678 28676 3 0 2980100 6651500 LHGVNINVEASK KTAAEDAIRNLHHYKLHGVNINVEASKNKS HYKLHGVNINVEASKNKSKTSTKLHVGNIS K L H S K N 1 0 2 0 0 0 1 1 1 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1279.6884 Q9BWF3;Q9BQ04 Q9BWF3 60 71 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2;3 0.0001514 135.8 By MS/MS By MS/MS 5.83 0.898 3 1 2 3 3 66704000 0 17124000 49580000 7985 1924 8316 34102;34103;34104;34105;34106;34107 28679;28680;28681;28682 28681 4 0 5995200 7062600 LHHYSDF YFALGNEKGKALMYRLHHYSDF________ KGKALMYRLHHYSDF_______________ R L H D F - 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 1 0 0 1 0 0 0 7 0 917.40317 Q9Y5J1 Q9Y5J1 550 556 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 0.023689 98.03 By MS/MS By matching By MS/MS 4 0.707 1 2 1 1 2 1 115750000 24265000 15699000 75785000 7986 2297 8317 34108;34109;34110;34111 28683;28684 28683 2 18931000 5069800 14699000 LHIFNAK GFCHVGEEENEARGKLHIFNAKKAAAHYKC EENEARGKLHIFNAKKAAAHYKCMLFSSGT K L H A K K 1 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 7 0 841.48102 Q8IWS0 Q8IWS0 228 234 PHF6 PHD finger protein 6 yes yes 2 9.4223E-15 138.61 By MS/MS 5 0 1 1 0 0 0 0 7987 1576 8318 34112 28685 28685 1 0 0 0 LHIIEVGTPPTGNQPFPK STLFCFAVRGQAGGKLHIIEVGTPPTGNQP IEVGTPPTGNQPFPKKAVDVFFPPEAQNDF K L H P K K 0 0 1 0 0 1 1 2 1 2 1 1 0 1 4 0 2 0 0 1 0 0 18 0 1944.0469 Q00610 Q00610 228 245 CLTC Clathrin heavy chain 1 yes yes 2;3 1.8087E-40 214 By MS/MS By MS/MS 1.86 0.833 3 2 2 3 4 128130000 0 48086000 80045000 7988 1125 8319 34113;34114;34115;34116;34117;34118;34119 28686;28687;28688;28689;28690 28689 5 0 22236000 17270000 LHILASGADVTSANAK KSLDLDSCTLSEILRLHILASGADVTSANA HILASGADVTSANAKYRYQKRGGFDATDDA R L H A K Y 4 0 1 1 0 0 0 1 1 1 2 1 0 0 0 2 1 0 0 1 0 0 16 0 1566.8366 Q9NRL2 Q9NRL2 555 570 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 4.7359E-05 73.834 By MS/MS 1 0 1 1 0 0 0 0 7989 2045 8320 34120 28691 28691 1 0 0 0 LHISPSNMTNQNTNEYLEK LPYNDYFEYFGPDFKLHISPSNMTNQNTNE PSNMTNQNTNEYLEKIKQRLFENLRMLPHA K L H E K I 0 0 4 0 0 1 2 0 1 1 2 1 1 0 1 2 2 0 1 0 0 0 19 0 2232.0481 Q13547 Q13547 343 361 HDAC1 Histone deacetylase 1 yes yes 3 4.7476E-11 161.91 By matching By MS/MS By MS/MS 4.2 0.4 4 1 1 2 2 57799000 4231700 18532000 35035000 7990 1257 8321;8322 34121;34122;34123;34124;34125 28692;28693;28694 28694 579 3 3301500 6150200 5579000 LHISPSNMTNQNTPEYMEK LPYNDYFEYFGPDFKLHISPSNMTNQNTPE PSNMTNQNTPEYMEKIKQRLFENLRMLPHA K L H E K I 0 0 3 0 0 1 2 0 1 1 1 1 2 0 2 2 2 0 1 0 0 0 19 0 2233.0144 Q92769 Q92769 344 362 HDAC2 Histone deacetylase 2 yes yes 3 9.4114E-05 87.668 By MS/MS 4 0 1 1 8022500 0 8022500 0 7991 1721 8323 34126 28695 28695 1 0 2662400 0 LHIVALIAQK KPGWKETNFQVMQMKLHIVALIAQKGNFSK VMQMKLHIVALIAQKGNFSKTSAQVVLDGL K L H Q K G 2 0 0 0 0 1 0 0 1 2 2 1 0 0 0 0 0 0 0 1 0 0 10 0 1104.7019 Q14008 Q14008 662 671 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00014161 143.56 By MS/MS 1.5 0.5 1 1 2 44013000 0 0 44013000 7992 1279 8324 34127;34128 28696 28696 1 0 0 9610000 LHLAIPTR ETKMKGNKVNEVLNRLHLAIPTRRDDKERP VNEVLNRLHLAIPTRRDDKERPPFIPEGVV R L H T R R 1 1 0 0 0 0 0 0 1 1 2 0 0 0 1 0 1 0 0 0 0 0 8 0 919.56034 Q9BZE4 Q9BZE4 360 367 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.0041239 102.71 By matching By MS/MS By MS/MS 3.6 0.8 3 1 1 1 2 2 59855000 3067200 21569000 35219000 7993 1941 8325 34129;34130;34131;34132;34133 28697;28698 28697 2 3538900 9055600 6680800 LHLEGQQVR KKKCQRLTAELQDTKLHLEGQQVRNHELEK ELQDTKLHLEGQQVRNHELEKKQRRFDSEL K L H V R N 0 1 0 0 0 2 1 1 1 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1078.5883 Q92614 Q92614 1444 1452 MYO18A Unconventional myosin-XVIIIa yes yes 2 0.0027361 102.71 By MS/MS 1 0 1 1 2026000 0 0 2026000 7994 1710 8326 34134 28699 28699 1 0 0 436540 LHLGFIEIR LHDNDRRLADHFGGKLHLGFIEIREKLEEL DHFGGKLHLGFIEIREKLEELKRVVAEKQE K L H I R E 0 1 0 0 0 0 1 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1096.6393 Q9Y383 Q9Y383 214 222 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes yes 2 9.524E-05 143.12 By MS/MS 5 0 1 1 26412000 0 0 26412000 7995 2259 8327 34135 28700 28700 1 0 0 3683900 LHLGFIQIR LHDNDRRLADHFGGKLHLGFIQIREKLDQL DHFGGKLHLGFIQIREKLDQLRKTVAEKQE K L H I R E 0 1 0 0 0 1 0 1 1 2 2 0 0 1 0 0 0 0 0 0 0 0 9 0 1095.6553 Q9NQ29 Q9NQ29 214 222 LUC7L Putative RNA-binding protein Luc7-like 1 yes yes 2 1.0322E-16 180.49 By MS/MS 5 0 1 1 15376000 0 0 15376000 7996 2030 8328 34136 28701 28701 1 0 0 2144700 LHLGHTFSLSK GKYFVTFPYPYMNGRLHLGHTFSLSKCEFA MNGRLHLGHTFSLSKCEFAVGYQRLKGKCC R L H S K C 0 0 0 0 0 0 0 1 2 0 3 1 0 1 0 2 1 0 0 0 0 0 11 0 1238.6772 Q9P2J5 Q9P2J5 59 69 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 0.03088 55.839 By MS/MS 1.5 0.5 1 1 2 8544800 0 0 8544800 7997 2124 8329 34137;34138 28702 28702 1 0 0 1906100 LHLGSTPHNLTDANIHELAR YIPLPEEAARAQMFRLHLGSTPHNLTDANI TPHNLTDANIHELARKTEGYSGADISIIVR R L H A R K 2 1 2 1 0 0 1 1 3 1 4 0 0 0 1 1 2 0 0 0 0 0 20 0 2208.14 Q9UN37 Q9UN37 305 324 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 4 0.004991 49.768 By MS/MS 5 0 1 1 3576600 0 3576600 0 7998 2201 8330 34139 28703 28703 1 0 921950 0 LHLSGIDANPNALFPPVEFPAPR DHRDNLEFFLAGIGRLHLSGIDANPNALFP NPNALFPPVEFPAPRGTPLISPLIKWDHSL R L H P R G 3 1 2 1 0 0 1 1 1 1 3 0 0 2 5 1 0 0 0 1 0 0 23 0 2471.2961 P49327 P49327 803 825 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 1.573E-20 141.78 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 8630100 0 4519700 4110500 7999 853 8331 34140;34141;34142 28704;28705;28706 28706 3 0 2105700 885670 LHLVDLAGSER EQRKKSDKNSSFRSKLHLVDLAGSERQKKT FRSKLHLVDLAGSERQKKTKAEGDRLKEGI K L H E R Q 1 1 0 1 0 0 1 1 1 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1208.6513 O95239;Q2VIQ3;Q9Y496;Q6ZMV9 O95239 236 246 KIF4A;KIF4B;KIF3A;KIF6 Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B;Kinesin-like protein KIF3A;Kinesin-like protein KIF6 yes no 2 0.001115 113.18 By matching By MS/MS 2 0 2 1 1 9252900 4031700 0 5221200 8000 314 8332 34143;34144 28707 28707 1 4857700 0 1179900 LHMVLRPFLLR FDTNNCLGDQKLVERLHMVLRPFLLRRIKA LVERLHMVLRPFLLRRIKADVEKSLPPKKE R L H L R R 0 2 0 0 0 0 0 0 1 0 4 0 1 1 1 0 0 0 0 1 0 0 11 1 1393.838 O60264 O60264 384 394 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 7.5356E-05 129.85 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 48634000 0 7806300 40828000 8001 223 8333 34145;34146;34147;34148;34149;34150 28708;28709;28710;28711 28710 4 0 3515300 9102500 LHNAIEGGTQLSR KSQQSAGKEYVGIVRLHNAIEGGTQLSRAL VRLHNAIEGGTQLSRALETLTGALFQRPPL R L H S R A 1 1 1 0 0 1 1 2 1 1 2 0 0 0 0 1 1 0 0 0 0 0 13 0 1394.7266 O60832 O60832 159 171 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2;3 0.00026583 132.32 By matching By MS/MS By MS/MS 3.82 1.27 1 3 4 2 1 1 2 8 164110000 9184800 20513000 134410000 8002 235 8334 34151;34152;34153;34154;34155;34156;34157;34158;34159;34160;34161 28712;28713;28714;28715;28716;28717;28718 28718 7 7165700 7208500 22750000 LHNMIVDLDNVVK EVAGAKPHITAAEGKLHNMIVDLDNVVKKV GKLHNMIVDLDNVVKKVQAAQSEAKVVSQY K L H V K K 0 0 2 2 0 0 0 0 1 1 2 1 1 0 0 0 0 0 0 3 0 0 13 0 1508.8021 Q16891 Q16891 331 343 IMMT MICOS complex subunit MIC60 yes yes 3 0.037394 49.31 By matching By MS/MS 3 0 2 1 1 4545500 1044900 0 3500600 8003 1403 8335 34162;34163 28719 28719 1 1205600 0 678940 LHNQQALSSSIEEGLR EYEAHQDRVLIRLSRLHNQQALSSSIEEGL HNQQALSSSIEEGLRMQAMHRAQRVRRPIP R L H L R M 1 1 1 0 0 2 2 1 1 1 3 0 0 0 0 3 0 0 0 0 0 0 16 0 1780.9068 Q06587 Q06587 131 146 RING1 E3 ubiquitin-protein ligase RING1 yes yes 3 2.2633E-05 101.2 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 28664000 0 7116900 21547000 8004 1171 8336 34164;34165;34166 28720;28721 28720 1 0 2148200 3519400 LHPDKNPNNPNAHGDFLK SSREIRQAFKKLALKLHPDKNPNNPNAHGD DKNPNNPNAHGDFLKINRAYEVLKDEDLRK K L H L K I 1 0 4 2 0 0 0 1 2 0 2 2 0 1 3 0 0 0 0 0 0 0 18 1 2026.9973 Q8IXB1 Q8IXB1 62 79 DNAJC10 DnaJ homolog subfamily C member 10 yes yes 4 0.027404 39.849 By MS/MS 3 0 1 1 4121300 0 4121300 0 8005 1580 8337 34167 28722 28722 1 0 1756900 0 LHPELSGPGVAAK GRGFSQPKSLARHLRLHPELSGPGVAAKVL LRLHPELSGPGVAAKVLAASVRRAKGPEEA R L H A K V 2 0 0 0 0 0 1 2 1 0 2 1 0 0 2 1 0 0 0 1 0 0 13 0 1274.6983 Q6DD87 Q6DD87 199 211 ZNF787 Zinc finger protein 787 yes yes 2 0.022905 77.379 By MS/MS 5 0 1 1 2176100 0 2176100 0 8006 1470 8338 34168 28723 28723 1 0 560930 0 LHPEMSNLDLTK PYFRFFMEKRAKYAKLHPEMSNLDLTKILS YAKLHPEMSNLDLTKILSKKYKELPEKKKM K L H T K I 0 0 1 1 0 0 1 0 1 0 3 1 1 0 1 1 1 0 0 0 0 0 12 0 1396.7021 P17480 P17480 133 144 UBTF Nucleolar transcription factor 1 yes yes 2;3 0.001477 112.83 By MS/MS By MS/MS 2.12 0.781 2 3 3 2 6 169510000 0 19454000 150060000 8007 584 8339 34169;34170;34171;34172;34173;34174;34175;34176 28724;28725;28726;28727;28728;28729;28730 28730 7 0 8612200 31718000 LHPFHVIR MVKSCGKDGFHIRVRLHPFHVIRINKMLSC GFHIRVRLHPFHVIRINKMLSCAGADRLQT R L H I R I 0 1 0 0 0 0 0 0 2 1 1 0 0 1 1 0 0 0 0 1 0 0 8 0 1017.5872 P27635;Q96L21 P27635 91 98 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2 0.013338 89.673 By MS/MS By MS/MS 7 0 2 1 1 174290000 0 29232000 145060000 8008 678 8340 34177;34178 28731;28732 28732 2 0 16785000 25739000 LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK TIQGQYAIPQPDLTKLHQLAMQQSHFPMTH NTGFSGIESSSPEVKGYWGLDASAQTTSHE K L H V K G 1 0 1 0 0 3 2 3 3 1 2 1 2 2 2 5 2 0 0 1 0 0 31 0 3381.587 Q15366 Q15366 246 276 PCBP2 Poly(rC)-binding protein 2 yes yes 5 2.6911E-09 60.093 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 49330000 0 11900000 37430000 8009 1357 8341;8342 34179;34180;34181 28733;28734 28734 623 2 0 4119500 5326600 LHSFESHKDEIFQVQWSPHNETILASSGTDR DKTVALWDLRNLKLKLHSFESHKDEIFQVQ SPHNETILASSGTDRRLNVWDLSKIGEEQS K L H D R R 1 1 1 2 0 2 3 1 3 2 2 1 0 2 1 5 2 1 0 1 0 0 31 1 3594.7128 Q09028 Q09028 310 340 RBBP4 Histone-binding protein RBBP4 yes yes 5 1.9979E-25 103.68 By MS/MS 4.5 0.5 1 1 2 53915000 0 0 53915000 8010 1188 8343 34182;34183 28735;28736 28736 2 0 0 8381400 LHSIILANPQDNENFIATVR GETPTVDTIDSYMNRLHSIILANPQDNENF LANPQDNENFIATVREVVNRLDR_______ R L H V R E 2 1 3 1 0 1 1 0 1 3 2 0 0 1 1 1 1 0 0 1 0 0 20 0 2264.1913 Q9NP66 Q9NP66 320 339 HMG20A High mobility group protein 20A yes yes 3 5.6765E-15 155.11 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 31094000 0 12823000 18271000 8011 2018 8344 34184;34185;34186 28737;28738;28739 28739 2 0 3305300 2606400 LHTLEEEKEELAQYQK KREKINELLKYIEERLHTLEEEKEELAQYQ HTLEEEKEELAQYQKWDKMRRALEYTIYNQ R L H Q K W 1 0 0 0 0 2 5 0 1 0 3 2 0 0 0 0 1 0 1 0 0 0 16 1 1986.9898 Q9UQE7 Q9UQE7 200 215 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3;4 0 345.64 By MS/MS 1.71 0.7 3 3 1 7 195380000 0 0 195380000 8012 2222 8345 34187;34188;34189;34190;34191;34192;34193 28740;28741;28742;28743 28742 4 0 0 43530000 LHTNFHIPK EEHLEEMMKMMSPNKLHTNFHIPKKGPPAK MMSPNKLHTNFHIPKKGPPAKKPGKHSDKP K L H P K K 0 0 1 0 0 0 0 0 2 1 1 1 0 1 1 0 1 0 0 0 0 0 9 0 1105.6033 Q9UIG0 Q9UIG0 378 386 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00052589 125.58 By MS/MS 1 0 1 1 9915900 0 0 9915900 8013 2164 8346 34194 28744 28744 1 0 0 2136500 LHVAILER PPGYHPLDVEKEWGKLHVAILEREKQLRSE VEKEWGKLHVAILEREKQLRSEFERLECLQ K L H E R E 1 1 0 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 949.5709 Q15149 Q15149 510 517 PLEC Plectin yes yes 2 0.00027578 133.81 By MS/MS 1 0 1 1 15113000 0 0 15113000 8014 1348 8347 34195 28745 28745 1 0 0 3256300 LHVDPENFR LKGAFASLSELHCDKLHVDPENFRLLGNVL ELHCDKLHVDPENFRLLGNVLVVVLARRFG K L H F R L 0 1 1 1 0 0 1 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1125.5567 P68871;P02042;CON__Q3SX09 CON__Q3SX09 151 159 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta no no 1;2 1.9118E-16 176.41 By MS/MS By MS/MS By MS/MS 9.14 1.36 1 2 4 2 1 4 646190000 96585000 14519000 535080000 + 8015 82;1081 8348 34196;34197;34198;34199;34200;34201;34202 28746;28747;28748;28749;28750;28751;28752;28753 28750 8 83452000 73452000 918340000 LHVNMGTTLHR RVLQKLNSILTQPWRLHVNMGTTLHRVTTI QPWRLHVNMGTTLHRVTTISMARCTLTLLK R L H H R V 0 1 1 0 0 0 0 1 2 0 2 0 1 0 0 0 2 0 0 1 0 0 11 0 1277.6663 Q69YN4 Q69YN4 989 999 KIAA1429 Protein virilizer homolog yes yes 3 0.0015267 94.465 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 13169000 0 3091000 10078000 8016 1468 8349 34203;34204;34205 28754;28755 28754 2 0 1510800 2191800 LHVTALDYLAPYAK LGTCFGKFTKTHKFRLHVTALDYLAPYAKY RLHVTALDYLAPYAKYKVWIKPGAEQSFLY R L H A K Y 3 0 0 1 0 0 0 0 1 0 3 1 0 0 1 0 1 0 2 1 0 0 14 0 1573.8504 Q9Y221 Q9Y221 81 94 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes yes 2;3 0.00036493 131.83 By matching By MS/MS By MS/MS 7 0 5 1 2 2 100450000 519630 14506000 85424000 8017 2226 8350 34206;34207;34208;34209;34210 28756;28757;28758;28759 28759 4 1119900 8329600 15158000 LIAAQTGTR RVKCNTDDTIGDLKKLIAAQTGTRWNKIVL IGDLKKLIAAQTGTRWNKIVLKKWYTIFKD K L I T R W 2 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 2 0 0 0 0 0 9 0 929.52943 Q9BZL1 Q9BZL1 30 38 UBL5 Ubiquitin-like protein 5 yes yes 2 6.5366E-18 146.54 By MS/MS 10 0 1 1 0 0 0 0 8018 1946 8351 34211 28760 28760 1 0 0 0 LIADVAPSAIR ______________________________ GLAKLIADVAPSAIRENDIKSYFGRKVAID K L I I R E 3 1 0 1 0 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 0 0 11 0 1124.6554 P39748 P39748 9 19 FEN1 Flap endonuclease 1 yes yes 2 4.6849E-07 156.35 By MS/MS By MS/MS By MS/MS 5.41 2.7 2 1 1 2 3 2 3 1 2 1 9 7 405650000 7938900 93200000 304510000 8019 780 8352 34212;34213;34214;34215;34216;34217;34218;34219;34220;34221;34222;34223;34224;34225;34226;34227;34228 28761;28762;28763;28764;28765;28766;28767;28768;28769;28770;28771;28772 28763 11 6360100 40185000 71438000 LIAHAGSLLNLAK APNVTVMVGELVGARLIAHAGSLLNLAKHA ARLIAHAGSLLNLAKHAASTVQILGAEKAL R L I A K H 3 0 1 0 0 0 0 1 1 1 4 1 0 0 0 1 0 0 0 0 0 0 13 0 1319.7925 Q9Y2X3 Q9Y2X3 298 310 NOP58 Nucleolar protein 58 yes yes 2;3 3.1524E-45 225.01 By MS/MS By MS/MS By MS/MS 3.75 1.48 2 1 3 5 3 2 2 4 10 341700000 3050500 105140000 233510000 8020 2254 8353 34229;34230;34231;34232;34233;34234;34235;34236;34237;34238;34239;34240;34241;34242;34243;34244 28773;28774;28775;28776;28777;28778;28779;28780;28781;28782;28783;28784;28785 28776 13 2379900 35235000 41922000 LIAHAGSLTNLAK APSLSALIGEAVGARLIAHAGSLTNLAKYP ARLIAHAGSLTNLAKYPASTVQILGAEKAL R L I A K Y 3 0 1 0 0 0 0 1 1 1 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1307.7561 O00567 O00567 308 320 NOP56 Nucleolar protein 56 yes yes 2;3 8.9072E-46 227.14 By MS/MS By MS/MS By MS/MS 3.57 1.24 1 1 5 4 2 1 1 6 7 562140000 8738600 178600000 374800000 8021 130 8354 34245;34246;34247;34248;34249;34250;34251;34252;34253;34254;34255;34256;34257;34258 28786;28787;28788;28789;28790;28791;28792;28793;28794;28795;28796 28788 10 10082000 70736000 69604000 LIALLEVLSQK KRIANLQTDLSDGLRLIALLEVLSQKKMHR DGLRLIALLEVLSQKKMHRKHNQRPTFRQM R L I Q K K 1 0 0 0 0 1 1 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 11 0 1225.7646 P21333;O75369;Q14315 P21333 77 87 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 5.6695E-05 143.7 By MS/MS By MS/MS 3.56 2.01 2 1 2 1 1 1 1 3 6 30006000 0 2158100 27848000 8022 623;1298;254 8355 34259;34260;34261;34262;34263;34264;34265;34266;34267 28797;28798;28799;28800;28801;28802;28803 28799 6 0 1012300 5640900 LIANNTTVER NRELSQKTPPSMRLKLIANNTTVERRFSSW SMRLKLIANNTTVERRFSSWIGGSILASLG K L I E R R 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1129.6091 O96019 O96019 380 389 ACTL6A Actin-like protein 6A yes yes 2 1.8199E-29 197.3 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 41843000 0 9409500 32434000 8023 354 8356 34268;34269;34270 28804;28805 28805 2 0 2425500 4611000 LIAPVAEEEATVPNNK ______________________________ IAPVAEEEATVPNNKITVVGVGQVGMACAI K L I N K I 3 0 2 0 0 0 3 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 16 0 1693.8887 P07195 P07195 8 23 LDHB L-lactate dehydrogenase B chain yes yes 2;3 3.3179E-05 130.56 By MS/MS By MS/MS By MS/MS 6 0.577 1 4 1 1 1 4 96695000 9218300 8613600 78864000 8024 452 8357 34271;34272;34273;34274;34275;34276 28806;28807;28808;28809;28810;28811 28806 6 12274000 2981700 11814000 LIASVAGSVER TGFMRGHGTYMGEEKLIASVAGSVERVNKL GEEKLIASVAGSVERVNKLICVKALKTRYI K L I E R V 2 1 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1100.619 Q13868 Q13868 52 62 EXOSC2 Exosome complex component RRP4 yes yes 2 0.00029851 133.13 By MS/MS By MS/MS 6 0 2 1 1 14142000 0 4354000 9787800 8025 1273 8358 34277;34278 28812;28813 28813 2 0 1507200 1464400 LIAVEIYR KLFESREKAVRDEAKLIAVEIYRWIRDALR AVRDEAKLIAVEIYRWIRDALRPPLQNINS K L I Y R W 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 1 1 0 0 8 0 975.57532 Q14008 Q14008 186 193 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00029531 132.29 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 75807000 0 0 75807000 8026 1279 8359 34279;34280;34281;34282 28814;28815;28816 28815 3 0 0 16580000 LIDFLESGK DLERGVEICIATPGRLIDFLESGKTNLRRC IATPGRLIDFLESGKTNLRRCTYLVLDEAD R L I G K T 0 0 0 1 0 0 1 1 0 1 2 1 0 1 0 1 0 0 0 0 0 0 9 0 1020.5492 Q92841 Q92841 305 313 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 0.00050384 124.98 By MS/MS By MS/MS 3 1.63 2 2 2 1 1 1 3 6 207910000 0 34391000 173520000 8027 1725 8360 34283;34284;34285;34286;34287;34288;34289;34290;34291 28817;28818;28819;28820;28821;28822;28823;28824 28824 8 0 14873000 33452000 LIDHLENTK ALAKKPHIIIATPGRLIDHLENTKGFNLRA IATPGRLIDHLENTKGFNLRALKYLVMDEA R L I T K G 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1081.5768 Q9H0S4 Q9H0S4 153 161 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.035926 75.571 By MS/MS 5 0 1 1 1846000 0 1846000 0 8028 1964 8361 34292 28825 28825 1 0 475850 0 LIDIFYPGDQQSVTFGTK VEGLFDSPPGSDDAKLIDIFYPGDQQSVTF IFYPGDQQSVTFGTKSRVGMGGMEAKVKAA K L I T K S 0 0 0 2 0 2 0 2 0 2 1 1 0 2 1 1 2 0 1 1 0 0 18 0 2028.0204 P54886 P54886 283 300 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2;3 0.0015634 79.466 By matching By MS/MS 4.43 1.5 3 1 1 1 1 1 6 116400000 1501000 0 114900000 8029 932 8362 34293;34294;34295;34296;34297;34298;34299 28826;28827 28827 2 1731800 0 20637000 LIDIQEK QQQRELKQLQEERKKLIDIQEKIQALQTAC QLQEERKKLIDIQEKIQALQTACPDLQLSA K L I E K I 0 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 7 0 857.48583 Q15154 Q15154 756 762 PCM1 Pericentriolar material 1 protein yes yes 2 0.020487 101.69 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 16385000 1182700 4765600 10437000 8030 1349 8363 34300;34301;34302;34303 28828;28829 28828 2 1182700 2329300 2268200 LIDLHSPSEIVK GSKTWDRFQMRIHKRLIDLHSPSEIVKQIT HKRLIDLHSPSEIVKQITSISIEPGVEVEV R L I V K Q 0 0 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 12 0 1349.7555 P60866 P60866 88 99 RPS20 40S ribosomal protein S20 yes yes 2;3 4.5578E-12 179.09 By MS/MS By MS/MS By MS/MS 8.38 1.21 1 2 4 3 3 1 6 6 682340000 5977000 291460000 384900000 8031 968 8364 34304;34305;34306;34307;34308;34309;34310;34311;34312;34313;34314;34315;34316 28830;28831;28832;28833;28834;28835;28836;28837;28838;28839;28840;28841;28842;28843;28844;28845 28833 16 3355000 152740000 98555000 LIDSWMGK LKQAEELNEKLTPLKLIDSWMGKGAAKLRV EKLTPLKLIDSWMGKGAAKLRVAGVVAPTL K L I G K G 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 0 1 0 0 0 0 8 0 948.47389 P46063 P46063 515 522 RECQL ATP-dependent DNA helicase Q1 yes yes 1 0.0098457 116.9 By MS/MS 3 0 1 1 21920000 0 0 21920000 8032 823 8365 34317 28846 28846 1 0 0 4251500 LIDVNHYAKDEVAAR ANQSRIDALEKAGQKLIDVNHYAKDEVAAR LIDVNHYAKDEVAARMNEVISLWKKLLEAT K L I A R M 3 1 1 2 0 0 1 0 1 1 1 1 0 0 0 0 0 0 1 2 0 0 15 1 1712.8846 Q13813 Q13813 638 652 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.0099378 71.08 By MS/MS By matching 1.5 0.5 1 1 1 1 4552100 0 2744100 1808000 8033 1268 8366 34318;34319 28847 28847 0 0 1341300 408580 LIDWGLAEFYHPGQEYNVR KPHNVMIDHEHRKLRLIDWGLAEFYHPGQE GLAEFYHPGQEYNVRVASRYFKGPELLVDY R L I V R V 1 1 1 1 0 1 2 2 1 1 2 0 0 1 1 0 0 1 2 1 0 0 19 0 2306.112 P68400;Q8NEV1 P68400 173 191 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2;3 7.9705E-11 163.33 By MS/MS 5 0.707 1 2 1 4 35365000 0 0 35365000 8034 1080 8367 34320;34321;34322;34323 28848;28849 28849 2 0 0 5053600 LIEEETAR FERQRKIRQQEIEEKLIEEETARRVEELVA QQEIEEKLIEEETARRVEELVAKRVEEELE K L I A R R 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 8 0 959.49238 Q9NWB6 Q9NWB6 125 132 ARGLU1 Arginine and glutamate-rich protein 1 yes yes 2 0.0047874 100.45 By MS/MS By MS/MS 6 0 2 1 1 22192000 0 6219700 15973000 8035 2077 8368 34324;34325 28850;28851 28851 2 0 2153000 2389700 LIEIENFK ______________________________ ______________________________ K L I F K S 0 0 1 0 0 0 2 0 0 2 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1004.5542 Q14683 Q14683 6 13 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0086823 95.352 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 88959000 0 21117000 67842000 8036 1312 8369 34326;34327;34328;34329;34330 28852;28853;28854;28855 28852 4 0 9789800 14981000 LIEILSEK STVGSMVFNEGEAQRLIEILSEKAGIIQDT NEGEAQRLIEILSEKAGIIQDTWHKATQKG R L I E K A 0 0 0 0 0 0 2 0 0 2 2 1 0 0 0 1 0 0 0 0 0 0 8 0 943.559 Q9P2E9 Q9P2E9 670 677 RRBP1 Ribosome-binding protein 1 yes yes 2 0.031838 87.754 By MS/MS 1 0 1 1 0 0 0 0 8037 2122 8370 34331 28856 28856 1 0 0 0 LIETTANMNSSYVK SALIVPKEMIKKAKKLIETTANMNSSYVKF KLIETTANMNSSYVKFLKQATDNSEISSAT K L I V K F 1 0 2 0 0 0 1 0 0 1 1 1 1 0 0 2 2 0 1 1 0 0 14 0 1569.7709 P46100 P46100 359 372 ATRX Transcriptional regulator ATRX yes yes 2 0.00039499 127.51 By MS/MS 2 0.816 1 1 1 3 19382000 0 0 19382000 8038 825 8371 34332;34333;34334 28857;28858 28858 2 0 0 4110900 LIEVDDER ______________________________ PATGCQKLIEVDDERKLRTFYEKRMATEVA K L I E R K 0 1 0 2 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 987.48729 P62753 P62753 15 22 RPS6 40S ribosomal protein S6 yes yes 2 0.001359 116.9 By MS/MS By MS/MS 6.67 2.92 1 2 1 1 1 1 5 266780000 0 31868000 234910000 8039 1032 8372 34335;34336;34337;34338;34339;34340 28859;28860;28861;28862 28861 4 0 11032000 39173000 LIEVDDERK ______________________________ ATGCQKLIEVDDERKLRTFYEKRMATEVAA K L I R K L 0 1 0 2 0 0 2 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1115.5823 P62753 P62753 15 23 RPS6 40S ribosomal protein S6 yes yes 2 0.0073674 98.458 By matching By MS/MS 6 0 2 1 1 22720000 0 3568800 19151000 8040 1032 8373 34341;34342 28863 28863 1 0 1235400 2865200 LIEYYQQLAQK GWQEPENPHTQRMNKLIEYYQQLAQKEKVE RMNKLIEYYQQLAQKEKVERDRKKLARRRN K L I Q K E 1 0 0 0 0 3 1 0 0 1 2 1 0 0 0 0 0 0 2 0 0 0 11 0 1395.7398 Q9UJW0 Q9UJW0 147 157 DCTN4 Dynactin subunit 4 yes yes 2 3.0198E-06 114.89 By MS/MS 4 0 1 1 0 0 0 0 8041 2172 8374 34343 28864 28864 1 0 0 0 LIFAGKQLEDGR AKIQDKEGIPPDQQRLIFAGKQLEDGRTLS QQRLIFAGKQLEDGRTLSDYNIQKESTLHL R L I G R T 1 1 0 1 0 1 1 2 0 1 2 1 0 1 0 0 0 0 0 0 0 0 12 1 1345.7354 P62987;P62979;P0CG47;P0CG48 P62987 43 54 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2;3 1.4768E-06 163.88 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 76564000 0 3162600 73402000 8042 500 8375 34344;34345;34346;34347;34348;34349 28865;28866;28867;28868 28868 4 0 1558600 12941000 LIFQMPQNK HLFYLLQTNPTYLAKLIFQMPQNKSTKFMD PTYLAKLIFQMPQNKSTKFMDSVIFTLYNY K L I N K S 0 0 1 0 0 2 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 9 0 1117.5954 P46940;Q13576;Q86VI3 P46940 989 997 IQGAP1;IQGAP2;IQGAP3 Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2;Ras GTPase-activating-like protein IQGAP3 no no 2 0.0016173 107.43 By MS/MS 1 0 1 1 5158200 0 5158200 0 8043 835;1552 8376 34350 28869 28869 1 0 2521200 0 LIFYDLR KVAGRIHAKRASGGKLIFYDLRGEGVKLQV AKRASGGKLIFYDLRGEGVKLQVMANSRNY K L I L R G 0 1 0 1 0 0 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 7 0 938.52255 Q15046 Q15046 142 148 KARS Lysine--tRNA ligase yes yes 2 0.031954 90.986 By MS/MS 3 0 1 1 4469200 0 0 4469200 8044 1336 8377 34351 28870 28870 1 0 0 866800 LIGEYGLR PRRPFEKSRLDQELKLIGEYGLRNKREVWR RLDQELKLIGEYGLRNKREVWRVKFTLAKI K L I L R N 0 1 0 0 0 0 1 2 0 1 2 0 0 0 0 0 0 0 1 0 0 0 8 0 919.51272 P46781 P46781 31 38 RPS9 40S ribosomal protein S9 yes yes 2 0.00024955 135.87 By MS/MS By MS/MS 5.75 2.77 1 1 1 1 1 2 2 1 2 7 5 634310000 0 319930000 314380000 8045 831 8378 34352;34353;34354;34355;34356;34357;34358;34359;34360;34361;34362;34363 28871;28872;28873;28874;28875;28876;28877;28878;28879;28880 28874 10 0 218620000 102010000 LIGLSATLPNYEDVATFLR ARAIRNIEMTQEDVRLIGLSATLPNYEDVA SATLPNYEDVATFLRVDPAKGLFYFDNSFR R L I L R V 2 1 1 1 0 0 1 1 0 1 4 0 0 1 1 1 2 0 1 1 0 0 19 0 2092.1205 O75643 O75643 648 666 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.0702E-23 194.7 By MS/MS By MS/MS 1.33 0.471 4 2 2 4 73906000 0 11896000 62010000 8046 277 8379 34364;34365;34366;34367;34368;34369 28881;28882;28883;28884;28885 28885 5 0 5814500 13408000 LIGNLSEK TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE HGDQVFKLIGNLSEKDMSMLEERIKRSAKR K L I E K D 0 0 1 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 0 0 0 0 8 0 872.49673 Q14008 Q14008 1404 1411 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0060826 98.523 By matching By MS/MS 1.33 0.471 2 1 1 2 25204000 1494600 0 23709000 8047 1279 8380 34370;34371;34372 28886 28886 1 1494600 0 5116600 LIGNLSEKDMSMLEER TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE IGNLSEKDMSMLEERIKRSAKRPSAAPIKQ K L I E R I 0 1 1 1 0 0 3 1 0 1 3 1 2 0 0 2 0 0 0 0 0 0 16 1 1863.907 Q14008 Q14008 1404 1419 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 7.7485E-06 142.97 By matching By MS/MS By MS/MS 1.2 0.4 4 1 1 1 3 32924000 3180100 3625600 26118000 8048 1279 8381 34373;34374;34375;34376;34377 28887;28888;28889 28889 3 3180100 1772200 5651600 LIGNMALLPIR ______________________________ PDTKLIGNMALLPIRSQFKGPAPRETKDTD K L I I R S 1 1 1 0 0 0 0 1 0 2 3 0 1 0 1 0 0 0 0 0 0 0 11 0 1209.7267 O15145 O15145 15 25 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 2 1.1423E-19 193.86 By matching By MS/MS By MS/MS 7.17 0.373 5 1 1 3 2 82098000 369950 50866000 30862000 8049 170 8382;8383 34378;34379;34380;34381;34382;34383 28890;28891;28892;28893;28894 28892 75 5 797330 29003000 5476200 LIGQIVSSITASLR RNLDIERPTYTNLNRLIGQIVSSITASLRF RLIGQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 1 0 3 2 0 0 0 0 3 1 0 0 1 0 0 14 0 1456.8613 Q71U36;P0DPH8;P0DPH7;Q6PEY2 Q71U36 230 243 TUBA1A;TUBA3E Tubulin alpha-1A chain;Tubulin alpha-3E chain yes no 2;3 2.9652E-11 176.95 By MS/MS By MS/MS 4.88 0.781 3 3 2 3 5 68927000 0 9827000 59100000 8050 1515 8384 34384;34385;34386;34387;34388;34389;34390;34391 28895;28896;28897;28898;28899;28900 28898 6 0 2784100 9020500 LIGVANQK EEALENVIKSTKPGKLIGVANQKMIELLAD KSTKPGKLIGVANQKMIELLADNINLGDPS K L I Q K M 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 841.50215 Q9H583 Q9H583 656 663 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.035489 107.74 By matching By MS/MS By matching 1.75 0.829 2 1 1 1 1 2 7672200 1234300 3401200 3036700 8051 1984 8385 34392;34393;34394;34395 28901 28901 0 1234300 1662500 596670 LIGVYTDFAFR ADEEKESPVEFTGHKLIGVYTDFAFRITPR TGHKLIGVYTDFAFRITPRNRESHNKILRD K L I F R I 1 1 0 1 0 0 0 1 0 1 1 0 0 2 0 0 1 0 1 1 0 0 11 0 1300.6816 Q5SY16 Q5SY16 496 506 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 2 0.00017596 138.06 By MS/MS 3 0 1 1 8540700 0 0 8540700 8052 1446 8386 34396 28902 28902 1 0 0 1656500 LIGWGQIR GEKIALSRRVEKHWRLIGWGQIRRGVTIKP RVEKHWRLIGWGQIRRGVTIKPTVDDD___ R L I I R R 0 1 0 0 0 1 0 2 0 2 1 0 0 0 0 0 0 1 0 0 0 0 8 0 941.54469 P41091;Q2VIR3 P41091 453 460 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.00015507 143.18 By MS/MS By MS/MS 4.5 1.5 1 2 2 2 2 1 5 5 229190000 0 103630000 125570000 8053 790 8387 34397;34398;34399;34400;34401;34402;34403;34404;34405;34406 28903;28904;28905;28906;28907;28908;28909 28907 7 0 32312000 20154000 LIHIPINNIIVGG AIGFAIMGFIGFFVKLIHIPINNIIVGG__ VKLIHIPINNIIVGG_______________ K L I G G - 0 0 2 0 0 0 0 2 1 5 1 0 0 0 1 0 0 0 0 1 0 0 13 0 1371.8238 P60059 P60059 56 68 SEC61G Protein transport protein Sec61 subunit gamma yes yes 2 0.042976 70.919 By MS/MS By MS/MS 10 0 2 1 1 32269000 12336000 0 19933000 8054 961 8388 34407;34408 28910;28911 28911 2 22474000 0 43595000 LIHITIEPLYR YYAASHKLIALAICKLIHITIEPLYRRVGV AICKLIHITIEPLYRRVGVPKGAKGSPVNA K L I Y R R 0 1 0 0 0 0 1 0 1 3 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1366.7973 Q8NI27 Q8NI27 386 396 THOC2 THO complex subunit 2 yes yes 3 0.0015319 94.409 By MS/MS 1.5 0.5 1 1 2 4580100 0 0 4580100 8055 1647 8389 34409;34410 28912 28912 1 0 0 1002700 LIHPDEDISLEER TSKPATLTTTSATSKLIHPDEDISLEERRA SKLIHPDEDISLEERRAQLPKYQRNLPRPG K L I E R R 0 1 0 2 0 0 3 0 1 2 2 0 0 0 1 1 0 0 0 0 0 0 13 0 1564.7733 O43670 O43670 363 375 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes yes 2;3 0.00031473 143.96 By MS/MS 3.25 0.829 1 1 2 4 43965000 0 0 43965000 8056 207 8390 34411;34412;34413;34414 28913;28914 28914 2 0 0 7460400 LIHTLDDRTQLWASEPGTPPLPTSLPSQNPILK QHKQIVRNDIKLAAKLIHTLDDRTQLWASE PPLPTSLPSQNPILKNITDYLIEEVSAEEE K L I L K N 1 1 1 2 0 2 1 1 1 2 6 1 0 0 6 3 4 1 0 0 0 0 33 1 3634.9359 Q9BXP5 Q9BXP5 527 559 SRRT Serrate RNA effector molecule homolog yes yes 4 3.1361E-07 55.043 By MS/MS 2 0 1 1 5093400 0 5093400 0 8057 1929 8391 34415 28915 28915 1 0 2293600 0 LIIAGTSAYAR DYNQLALTARLFRPRLIIAGTSAYARLIDY FRPRLIIAGTSAYARLIDYARMREVCDEVK R L I A R L 3 1 0 0 0 0 0 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 11 0 1134.6397 P34897 P34897 220 230 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 8.2526E-06 151.97 By MS/MS By MS/MS By MS/MS 3.62 1.49 1 1 1 3 1 1 3 2 3 212890000 17593000 53210000 142090000 8058 734 8392 34416;34417;34418;34419;34420;34421;34422;34423 28916;28917;28918;28919 28919 4 18935000 16838000 23206000 LIIAMLEREKALR LQGYHPNDIEKEWGKLIIAMLEREKALRPE GKLIIAMLEREKALRPEVERLEMLQQIANR K L I L R P 2 2 0 0 0 0 2 0 0 2 3 1 1 0 0 0 0 0 0 0 0 0 13 2 1554.928 Q03001 Q03001 365 377 DST Dystonin yes yes 3 0.047314 53.967 By matching By MS/MS By matching 4.12 2.42 1 2 1 1 1 1 1 2 2 4 155090000 4593700 34410000 116080000 8059 1152 8393 34424;34425;34426;34427;34428;34429;34430;34431 28920 28920 1 4986500 15230000 18960000 LIILANGGPQALVQIMR TDCLQLLAYGNQESKLIILANGGPQALVQI ILANGGPQALVQIMRNYSYEKLLWTTSRVL K L I M R N 2 1 1 0 0 2 0 2 0 3 3 0 1 0 1 0 0 0 0 1 0 0 17 0 1806.055 P14923 P14923 304 320 JUP Junction plakoglobin yes yes 2 3.0851E-09 169.37 By MS/MS By MS/MS 6.75 2.86 1 1 1 1 3 1 10013000 4882100 0 5130900 8060 567 8394 34432;34433;34434;34435 28921;28922;28923;28924 28922 4 3762600 0 995150 LIILDEIHLLHDDR ITRKGGERTYTQLVRLIILDEIHLLHDDRG RLIILDEIHLLHDDRGPVLEALVARAIRNI R L I D R G 0 1 0 3 0 0 1 0 2 3 4 0 0 0 0 0 0 0 0 0 0 0 14 0 1713.9414 O75643 O75643 611 624 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 0.015274 56.648 By MS/MS 1.5 0.5 1 1 2 2213000 0 0 2213000 8061 277 8395 34436;34437 28925 28925 1 0 0 481980 LIINSLYK SEKFAFQAEVNRMMKLIINSLYKNKEIFLR EVNRMMKLIINSLYKNKEIFLRELISNASD K L I Y K N 0 0 1 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 1 0 0 0 8 0 962.58007 P14625 P14625 88 95 HSP90B1 Endoplasmin yes yes 2 0.0041223 102.72 By MS/MS By MS/MS By MS/MS 2 0.632 1 3 1 1 1 3 29791000 7573400 5994700 16223000 8062 560 8396 34438;34439;34440;34441;34442 28926;28927;28928 28927 3 9125000 2699500 3449900 LIIWDSYTTNK GTDSRLLVSASQDGKLIIWDSYTTNKVHAI QDGKLIIWDSYTTNKVHAIPLRSSWVMTCA K L I N K V 0 0 1 1 0 0 0 0 0 2 1 1 0 0 0 1 2 1 1 0 0 0 11 0 1352.6976 P62873 P62873 79 89 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 0.0034096 105.36 By matching By MS/MS 6 0 2 1 1 25857000 0 5491500 20366000 8063 1043 8397 34443;34444 28929 28929 1 0 1901000 3047000 LILEQMQK ADPEVQQIMSDPAMRLILEQMQKDPQALSE MSDPAMRLILEQMQKDPQALSEHLKNPVIA R L I Q K D 0 0 0 0 0 2 1 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 8 0 1001.558 P31948 P31948 506 513 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.0034782 105.12 By MS/MS 3 0 1 1 0 0 0 0 8064 726 8398 34445 28930 28930 1 0 0 0 LILEVHQFSR KEMIDKWEDRWEWLRLILEVHQFSRDASVA WEWLRLILEVHQFSRDASVAEAWLLGQEPY R L I S R D 0 1 0 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1240.6928 Q01082 Q01082 2015 2024 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 0.0013728 92.538 By matching By MS/MS By MS/MS 1.17 0.373 5 1 1 3 2 82223000 683320 11758000 69781000 8065 1128 8399 34446;34447;34448;34449;34450;34451 28931;28932;28933;28934 28934 4 683320 5721700 15035000 LILIESR KHLERNRKDKDAKFRLILIESRIHRLARYY KDKDAKFRLILIESRIHRLARYYKTKRVLP R L I S R I 0 1 0 0 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 7 0 842.52255 P62277 P62277 115 121 RPS13 40S ribosomal protein S13 yes yes 2 0.0029208 143.37 By MS/MS By MS/MS By MS/MS 7.5 1.36 1 1 3 3 1 1 1 4 5 428950000 18033000 185680000 225240000 8066 1016 8400 34452;34453;34454;34455;34456;34457;34458;34459;34460;34461 28935;28936;28937;28938;28939;28940;28941;28942 28938 8 15482000 89716000 59773000 LILISTNGSFIR RTCEWTGLKFSNDGKLILISTNGSFIRLID DGKLILISTNGSFIRLIDAFKGVVMHTFGG K L I I R L 0 1 1 0 0 0 0 1 0 3 2 0 0 1 0 2 1 0 0 0 0 0 12 0 1332.7765 Q6UXN9 Q6UXN9 208 219 WDR82 WD repeat-containing protein 82 yes yes 2 9.0348E-05 140.75 By MS/MS 6 0 1 1 8293700 0 0 8293700 8067 1506 8401 34462 28943 28943 1 0 0 1240800 LILLITQVTASEK SRVKTFQKLSHLHGKLILLITQVTASEKTK GKLILLITQVTASEKTKGATSPGQKAKLVY K L I E K T 1 0 0 0 0 1 1 0 0 2 3 1 0 0 0 1 2 0 0 1 0 0 13 0 1427.8599 Q15061 Q15061 572 584 WDR43 WD repeat-containing protein 43 yes yes 2 0.0023263 107.83 By MS/MS 3 0 1 1 3535900 0 0 3535900 8068 1343 8402 34463 28944 28944 1 0 0 685800 LILLWYNPVTEEDVQLR LMFSGLLVSSRILSRLILLWYNPVTEEDVQ LLWYNPVTEEDVQLRHCLGVFFPVFAYASR R L I L R H 0 1 1 1 0 1 2 0 0 1 4 0 0 0 1 0 1 1 1 2 0 0 17 0 2100.1255 Q9BPX3 Q9BPX3 733 749 NCAPG Condensin complex subunit 3 yes yes 2 5.8247E-28 205.46 By MS/MS 2.5 0.5 1 1 2 3655800 0 0 3655800 8069 1873 8403 34464;34465 28945 28945 1 0 0 763240 LILPHVPAILQYLSK GIAENIGESITIGGRLILPHVPAILQYLSK LILPHVPAILQYLSKTTISAEKVKKKKNRA R L I S K T 1 0 0 0 0 1 0 0 1 2 4 1 0 0 2 1 0 0 1 1 0 0 15 0 1704.0338 O75691 O75691 1298 1312 UTP20 Small subunit processome component 20 homolog yes yes 3 0.00090571 83.692 By MS/MS 1 0 1 1 4421400 0 0 4421400 8070 280 8404 34466 28946 28946 1 0 0 952650 LILPVGPAGGNQMLEQYDK VVPQALIDQLKPGGRLILPVGPAGGNQMLE VGPAGGNQMLEQYDKLQDGSIKMKPLMGVI R L I D K L 1 0 1 1 0 2 1 3 0 1 3 1 1 0 2 0 0 0 1 1 0 0 19 0 2042.0507 P22061 P22061 179 197 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes yes 2;3 1.3078E-10 162.93 By matching By MS/MS 7 0 4 2 2 37153000 0 2032000 35121000 8071 626 8405 34467;34468;34469;34470 28947;28948 28947 2 0 1166800 6232100 LILPVGPAGGNQMLEQYDKLQDGSIK VVPQALIDQLKPGGRLILPVGPAGGNQMLE QMLEQYDKLQDGSIKMKPLMGVIYVPLTDK R L I I K M 1 0 1 2 0 3 1 4 0 2 4 2 1 0 2 1 0 0 1 1 0 0 26 1 2783.4528 P22061 P22061 179 204 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes yes 3 1.6172E-16 103.29 By MS/MS 7 0 1 1 11917000 0 0 11917000 8072 626 8406 34471 28949 28949 1 0 0 2114600 LILWYFEHQLK LEQLSSGNKDSRDRRLILWYFEHQLKHLVA RDRRLILWYFEHQLKHLVAEFVQVLETLSH R L I L K H 0 0 0 0 0 1 1 0 1 1 3 1 0 1 0 0 0 1 1 0 0 0 11 0 1488.8129 Q03701 Q03701 330 340 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 0.018793 64.103 By MS/MS 1.5 0.5 1 1 2 7118700 0 0 7118700 8073 1157 8407 34472;34473 28950 28950 1 0 0 1599000 LIMLVDDFYYGR VPEPNENVGDAVQTKLIMLVDDFYYGRDGG QTKLIMLVDDFYYGRDGGKVAQLTNFPKVA K L I G R D 0 1 0 2 0 0 0 1 0 1 2 0 1 1 0 0 0 0 2 1 0 0 12 0 1503.7432 Q7Z3K3 Q7Z3K3 465 476 POGZ Pogo transposable element with ZNF domain yes yes 2 0.01716 86.624 By MS/MS 2 0 1 1 5894600 0 0 5894600 8074 1530 8408 34474 28951 28951 1 0 0 1332100 LIMNPSYYNLGDVSHDSVNK QDALDYITWTYFFRRLIMNPSYYNLGDVSH SYYNLGDVSHDSVNKFLSHLIEKSLIELEL R L I N K F 0 0 3 2 0 0 0 1 1 1 2 1 1 0 1 3 0 0 2 2 0 0 20 0 2265.0736 Q8N3C0 Q8N3C0 1763 1782 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 3.0978E-07 99.508 By MS/MS 1 0 1 1 9622600 0 9622600 0 8075 1602 8409 34475 28952 28952 1 0 4703400 0 LIMQYLK ______________________________ IESSDVIRLIMQYLKENSLHRALATLQEET R L I L K E 0 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 0 0 1 0 0 0 7 0 907.52011 Q2TAY7 Q2TAY7 13 19 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 0.027632 94.669 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 63423000 0 41086000 22337000 8076 1407 8410 34476;34477;34478 28953;28954;28955 28953 3 0 12901000 3648400 LINLVGESLR TDYNNNHEGREEDQRLINLVGESLRLLGNT EEDQRLINLVGESLRLLGNTFVALSDLRCN R L I L R L 0 1 1 0 0 0 1 1 0 1 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1112.6554 P46379 P46379 322 331 BAG6 Large proline-rich protein BAG6 yes yes 2 0.015176 85.744 By MS/MS 2 0 1 1 2597800 0 2597800 0 8077 826 8411 34479 28956 28956 1 0 1169800 0 LINNNPEIFGPLK FAEFQEHEHALKALRLINNNPEIFGPLKRP LRLINNNPEIFGPLKRPIVEFSLEDRRKLK R L I L K R 0 0 3 0 0 0 1 1 0 2 2 1 0 1 2 0 0 0 0 0 0 0 13 0 1467.8086 Q9NW13 Q9NW13 559 571 RBM28 RNA-binding protein 28 yes yes 2 0.0039821 103.26 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 1 5 39145000 0 5318900 33826000 8078 2075 8412 34480;34481;34482;34483;34484;34485 28957;28958;28959 28957 3 0 2267400 6978300 LINRPIIVFR ASVETAGDSELFLMKLINRPIIVFRGEHGF LFLMKLINRPIIVFRGEHGFIGCRKVTGTL K L I F R G 0 2 1 0 0 0 0 0 0 3 1 0 0 1 1 0 0 0 0 1 0 0 10 1 1239.7816 Q16658 Q16658 380 389 FSCN1 Fascin yes yes 3 0.00021602 111.61 By MS/MS 4 0 1 1 5723000 0 5723000 0 8079 1397 8413 34486 28960 28960 1 0 1899300 0 LIPDSIGKDIEK TREVQTNDLKEVVNKLIPDSIGKDIEKACQ VNKLIPDSIGKDIEKACQSIYPLHDVFVRK K L I E K A 0 0 0 2 0 0 1 1 0 3 1 2 0 0 1 1 0 0 0 0 0 0 12 1 1326.7395 P61247 P61247 188 199 RPS3A 40S ribosomal protein S3a yes yes 2;3 0.0031845 105.98 By MS/MS By MS/MS 6 0 4 2 2 138240000 0 56682000 81556000 8080 988 8414 34487;34488;34489;34490 28961;28962;28963 28962 3 0 19621000 12202000 LIPFSPAVNTSVSTVASTVAPMYAGDLR QPVTLGEVEQVQSGKLIPFSPAVNTSVSTV TVASTVAPMYAGDLRTKPPLDHNASATDYK K L I L R T 4 1 1 1 0 0 0 1 0 1 2 0 1 1 3 4 3 0 1 4 0 0 28 0 2863.479 O95425 O95425 868 895 SVIL Supervillin yes yes 3 0.0092938 31.632 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 5821200 0 2840300 2980900 8081 325 8415 34491;34492;34493;34494 28964;28965;28966 28965 3 0 1320700 634920 LIPTELR QERKERLRRALEENRLIPTELRREALALQG RRALEENRLIPTELRREALALQGSLEFDDA R L I L R R 0 1 0 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 7 0 840.5069 Q96G21 Q96G21 41 47 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 2 0.043058 80.377 By matching By MS/MS 8.67 1.89 1 2 1 2 21769000 0 9192300 12577000 8082 1787 8416 34495;34496;34497 28967;28968 28968 2 0 46505000 11186000 LIPTELRR QERKERLRRALEENRLIPTELRREALALQG RALEENRLIPTELRREALALQGSLEFDDAG R L I R R E 0 2 0 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 0 0 0 0 8 1 996.60801 Q96G21 Q96G21 41 48 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 2 0.036246 83.753 By MS/MS 6.5 0.5 1 1 2 35192000 0 35192000 0 8083 1787 8417 34498;34499 28969 28969 1 0 18890000 0 LIQDQQEQIQHLK HKLDTVSSKIELNRKLIQDQQEQIQHLKST RKLIQDQQEQIQHLKSTTNELKSEKLQIST K L I L K S 0 0 0 1 0 5 1 0 1 2 2 1 0 0 0 0 0 0 0 0 0 0 13 0 1619.8631 Q92878 Q92878 852 864 RAD50 DNA repair protein RAD50 yes yes 3 0.0031787 80.522 By MS/MS 1.5 0.5 1 1 2 26680000 0 0 26680000 8084 1726 8418 34500;34501 28970;28971 28971 2 0 0 5910200 LIQEQHPEEELIK AHEERVNEVNQFAAKLIQEQHPEEELIKTK AKLIQEQHPEEELIKTKQDEVNAAWQRLKG K L I I K T 0 0 0 0 0 2 4 0 1 2 2 1 0 0 1 0 0 0 0 0 0 0 13 0 1604.841 Q13813 Q13813 215 227 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 3.3398E-08 173.76 By MS/MS By MS/MS 1.43 0.495 4 3 3 4 278450000 0 73069000 205380000 8085 1268 8419 34502;34503;34504;34505;34506;34507;34508 28972;28973;28974;28975;28976;28977;28978 28973 7 0 35363000 44631000 LIQLMEEIMAEK LQIVDVCMESEKDHKLIQLMEEIMAEKENK DHKLIQLMEEIMAEKENKTIIFVETKRRCD K L I E K E 1 0 0 0 0 1 3 0 0 2 2 1 2 0 0 0 0 0 0 0 0 0 12 0 1446.7462 Q92841 Q92841 406 417 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 0.0044017 104.52 By MS/MS 2.5 1.12 1 1 1 1 4 62970000 0 0 62970000 8086 1725 8420 34509;34510;34511;34512 28979;28980;28981 28980 2 0 0 12327000 LIQLMEEIMAEKENK LQIVDVCMESEKDHKLIQLMEEIMAEKENK LIQLMEEIMAEKENKTIIFVETKRRCDDLT K L I N K T 1 0 1 0 0 1 4 0 0 2 2 2 2 0 0 0 0 0 0 0 0 0 15 1 1817.9267 Q92841 Q92841 406 420 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 3 0.00048822 90.229 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 19885000 0 3956700 15929000 8087 1725 8421 34513;34514;34515;34516 28982;28983;28984 28984 3 0 1723800 3261500 LIQNNHYAMEDVATR AQEEKITALDEFATKLIQNNHYAMEDVATR LIQNNHYAMEDVATRRDALLSRRNALHERA K L I T R R 2 1 2 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 1 1 0 0 15 0 1773.8468 Q13813 Q13813 533 547 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.00049809 88.311 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 65366000 0 24304000 41062000 8088 1268 8422;8423 34517;34518;34519;34520 28985;28986;28987 28987 583 3 0 11880000 8930400 LIQNNHYAMEDVATRR AQEEKITALDEFATKLIQNNHYAMEDVATR IQNNHYAMEDVATRRDALLSRRNALHERAM K L I R R D 2 2 2 1 0 1 1 0 1 1 1 0 1 0 0 0 1 0 1 1 0 0 16 1 1929.9479 Q13813 Q13813 533 548 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3;4 1.5184E-05 105.46 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 43394000 0 18931000 24463000 8089 1268 8424 34521;34522;34523;34524 28988;28989;28990 28988 3 0 9253100 5298000 LIQSHPESAEDLQEK ALGDKVNSLGETAERLIQSHPESAEDLQEK LIQSHPESAEDLQEKCTELNQAWSSLGKRA R L I E K C 1 0 0 1 0 2 3 0 1 1 2 1 0 0 1 2 0 0 0 0 0 0 15 0 1722.8424 Q13813 Q13813 1299 1313 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 2.2845E-17 188.09 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 140740000 0 39837000 100900000 8090 1268 8425 34525;34526;34527;34528;34529 28991;28992;28993;28994;28995 28992 5 0 19472000 21808000 LISGWVSR PLIRSMRTVKRETLKLISGWVSRSNDPQMV VKRETLKLISGWVSRSNDPQMVAENFVPPL K L I S R S 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 2 0 1 0 1 0 0 8 0 916.51305 O14980 O14980 758 765 XPO1 Exportin-1 yes yes 2 0.058803 80.229 By matching By MS/MS 2 0 2 1 1 5564500 1827500 0 3737000 8091 158 8426 34530;34531 28996 28996 0 2201900 0 844500 LISIWSR RLGSESQYSPTPLLKLISIWSRNARYFPLL YSPTPLLKLISIWSRNARYFPLLAKQKPGH K L I S R N 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 0 7 0 873.50724 O75691 O75691 1205 1211 UTP20 Small subunit processome component 20 homolog yes yes 2 0.018746 104.8 By matching By MS/MS 1 0 2 1 1 4911400 558480 0 4353000 8092 280 8427 34532;34533 28997 28997 1 558480 0 937910 LISLFQAMK AERAVTGYKDPYSGKLISLFQAMKKGLILK DPYSGKLISLFQAMKKGLILKDHGIRLLEA K L I M K K 1 0 0 0 0 1 0 0 0 1 2 1 1 1 0 1 0 0 0 0 0 0 9 0 1049.5943 Q15149 Q15149 4159 4167 PLEC Plectin yes yes 2 0.00078533 112.37 By MS/MS 1 0 1 1 12436000 0 12436000 0 8093 1348 8428 34534 28998 28998 1 0 6078600 0 LISLPLSR MADVVVGKDKGGEQRLISLPLSRIRVIMKS DKGGEQRLISLPLSRIRVIMKSSPEVSSIN R L I S R I 0 1 0 0 0 0 0 0 0 1 3 0 0 0 1 2 0 0 0 0 0 0 8 0 897.56475 Q9NRG0 Q9NRG0 16 23 CHRAC1 Chromatin accessibility complex protein 1 yes yes 2 0.0001561 143.11 By MS/MS By MS/MS 8.67 0.471 1 2 2 1 56091000 0 8572600 47519000 8094 2043 8429 34535;34536;34537 28999;29000 29000 2 0 6790800 15179000 LISPESTVMLLEAQAATGGIIDPHR SPKEKYSLVEAKRKKLISPESTVMLLEAQA LEAQAATGGIIDPHRNEKLTVDSAIARDLI K L I H R N 3 1 0 1 0 1 2 2 1 3 3 0 1 0 2 2 2 0 0 1 0 0 25 0 2618.3738 P15924 P15924 2039 2063 DSP Desmoplakin yes yes 2;3;4 5.432E-13 98.74 By MS/MS By MS/MS 4.09 2.02 2 1 4 1 1 2 5 6 1127800000 1050800000 0 76940000 8095 572 8430 34538;34539;34540;34541;34542;34543;34544;34545;34546;34547;34548 29001;29002;29003;29004;29005;29006;29007 29003 7 821890000 0 14436000 LISPESTVMLLEAQAATGGIIDPHRNEK SPKEKYSLVEAKRKKLISPESTVMLLEAQA QAATGGIIDPHRNEKLTVDSAIARDLIDFD K L I E K L 3 1 1 1 0 1 3 2 1 3 3 1 1 0 2 2 2 0 0 1 0 0 28 1 2989.5543 P15924 P15924 2039 2066 DSP Desmoplakin yes yes 4 3.3412E-08 70.771 By MS/MS 1.5 0.5 1 1 2 8393900 0 0 8393900 8096 572 8431 34549;34550 29008 29008 1 0 0 1826000 LISQIVSSITASLR RNLDIERPTYTNLNRLISQIVSSITASLRF RLISQIVSSITASLRFDGALNVDLTEFQTN R L I L R F 1 1 0 0 0 1 0 0 0 3 2 0 0 0 0 4 1 0 0 1 0 0 14 0 1486.8719 P68363;Q9H853;P68366;Q9BQE3 P68363 230 243 TUBA1B;TUBA4B;TUBA4A;TUBA1C Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1C chain no no 2;3 1.3124E-72 244.06 By MS/MS By MS/MS By MS/MS 3.79 1.83 3 3 4 6 5 2 1 3 12 9 4377100000 23579000 3291900000 1061700000 8097 1077;1883;1078 8432 34551;34552;34553;34554;34555;34556;34557;34558;34559;34560;34561;34562;34563;34564;34565;34566;34567;34568;34569;34570;34571;34572;34573;34574 29009;29010;29011;29012;29013;29014;29015;29016;29017;29018;29019;29020;29021;29022;29023;29024;29025;29026;29027;29028;29029;29030;29031;29032;29033;29034;29035;29036;29037 29036 29 18440000 1008100000 181330000 LISSDGHEFIVK KTYGGCEGPDAMYVKLISSDGHEFIVKREH YVKLISSDGHEFIVKREHALTSGTIKAMLS K L I V K R 0 0 0 1 0 0 1 1 1 2 1 1 0 1 0 2 0 0 0 1 0 0 12 0 1343.7085 Q15369 Q15369 21 32 TCEB1 Transcription elongation factor B polypeptide 1 yes yes 3 0.034241 53.034 By MS/MS By matching 10 0 2 1 1 14531000 0 11484000 3047100 8098 1358 8433 34575;34576 29038 29038 1 0 58099000 6664200 LISSDGHEFIVKR KTYGGCEGPDAMYVKLISSDGHEFIVKREH VKLISSDGHEFIVKREHALTSGTIKAMLSG K L I K R E 0 1 0 1 0 0 1 1 1 2 1 1 0 1 0 2 0 0 0 1 0 0 13 1 1499.8096 Q15369 Q15369 21 33 TCEB1 Transcription elongation factor B polypeptide 1 yes yes 3 0.0011803 95.417 By MS/MS 10 0 1 1 2973900 0 2973900 0 8099 1358 8434 34577 29039 29039 1 0 15045000 0 LISWYDNEFGYSNR FDAGAGIALNDHFVKLISWYDNEFGYSNRV KLISWYDNEFGYSNRVVDLMAHMASKE___ K L I N R V 0 1 2 1 0 0 1 1 0 1 1 0 0 1 0 2 0 1 2 0 0 0 14 0 1762.7951 P04406 P04406 310 323 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 5.4259E-45 219.03 By MS/MS By MS/MS By MS/MS 6 2.87 2 2 1 1 3 1 2 2 2 7 2 7 150170000 32723000 9173600 108270000 8100 415 8435 34578;34579;34580;34581;34582;34583;34584;34585;34586;34587;34588;34589;34590;34591;34592;34593 29040;29041;29042;29043;29044;29045;29046;29047;29048;29049;29050;29051;29052 29043 13 28095000 5367600 19079000 LITAADTTAEQR ARKKEREKRSQDLQKLITAADTTAEQRRTE LQKLITAADTTAEQRRTERKAPKKKLPQKK K L I Q R R 3 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 3 0 0 0 0 0 12 0 1288.6623 Q9NPF5 Q9NPF5 271 282 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 2 5.8777E-07 163.64 By MS/MS 2.5 1.5 1 1 2 11544000 0 0 11544000 8101 2027 8436 34594;34595 29053 29053 1 0 0 2080400 LITDNTVEER RAHRIGQKKPVRVFRLITDNTVEERIVERA VRVFRLITDNTVEERIVERAEIKLRLDSIV R L I E R I 0 1 1 1 0 0 2 0 0 1 1 0 0 0 0 0 2 0 0 1 0 0 10 0 1188.5986 P28370 P28370 622 631 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 1.5617E-22 192.14 By matching By MS/MS 2 0 2 1 1 13205000 2224100 10981000 0 8102 693 8437 34596;34597 29054 29054 1 2679800 4945100 0 LITEDVQGK LADLQNDEVAFRKFKLITEDVQGKNCLTNF AFRKFKLITEDVQGKNCLTNFHGMDLTRDK K L I G K N 0 0 0 1 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1001.5393 P61247 P61247 86 94 RPS3A 40S ribosomal protein S3a yes yes 2 0.00039905 136.11 By MS/MS By MS/MS By MS/MS 6.29 0.452 5 2 3 1 3 363140000 35532000 70646000 256960000 8103 988 8438 34598;34599;34600;34601;34602;34603;34604 29055;29056;29057;29058;29059 29056 5 57609000 24455000 38856000 LITGASDSELR RTEVWGLVLLSEEKRLITGASDSELRVWDI EEKRLITGASDSELRVWDIAYLQEIEDPEE R L I L R V 1 1 0 1 0 0 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 11 0 1160.6037 Q9UNX4 Q9UNX4 206 216 WDR3 WD repeat-containing protein 3 yes yes 2 0.00032804 128.27 By MS/MS 2 0 1 1 9291300 0 9291300 0 8104 2212 8439 34605 29060 29060 1 0 4184000 0 LITGLGVGR RGRPKGSEMKYALKRLITGLGVGRETARPC KYALKRLITGLGVGRETARPCYSLALAQLL R L I G R E 0 1 0 0 0 0 0 3 0 1 2 0 0 0 0 0 1 0 0 1 0 0 9 0 884.54435 Q9BQG0 Q9BQG0 77 85 MYBBP1A Myb-binding protein 1A yes yes 2 0.00036888 138.24 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 38362000 0 15567000 22796000 8105 1885 8440 34606;34607;34608 29061;29062 29062 2 0 7009900 5003400 LITKPSEGTTLR REQKEKTGEEINFGKLITKPSEGTTLRVED FGKLITKPSEGTTLRVEDLVKQYFQTAEKN K L I L R V 0 1 0 0 0 0 1 1 0 1 2 1 0 0 1 1 3 0 0 0 0 0 12 1 1314.7507 P49959 P49959 417 428 MRE11A Double-strand break repair protein MRE11A yes yes 3 0.063191 45.28 By matching By MS/MS 3.33 0.471 2 1 1 2 31322000 0 2132900 29189000 8106 875 8441 34609;34610;34611 29063;29064 29064 2 0 909240 5574300 LITLEEEMTK LEFFGLKKEECPAVRLITLEEEMTKYKPES CPAVRLITLEEEMTKYKPESEELTAERITE R L I T K Y 0 0 0 0 0 0 3 0 0 1 2 1 1 0 0 0 2 0 0 0 0 0 10 0 1205.6213 P07237 P07237 317 326 P4HB Protein disulfide-isomerase yes yes 2 0.00081726 113.18 By matching By MS/MS 4.33 0.471 2 1 1 2 23382000 6340800 0 17041000 8107 456 8442 34612;34613;34614 29065 29065 1 4946900 0 2719600 LITPAVVSER KATYDKLCKEVPNYKLITPAVVSERLKIRG VPNYKLITPAVVSERLKIRGSLARAALQEL K L I E R L 1 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 10 0 1083.6288 P62851 P62851 67 76 RPS25 40S ribosomal protein S25 yes yes 2 0.00021066 141.48 By MS/MS By MS/MS By MS/MS 8.5 1.22 1 3 2 2 1 4 3 546130000 11779000 297960000 236390000 8108 1039 8443 34615;34616;34617;34618;34619;34620;34621;34622 29066;29067;29068;29069;29070;29071;29072;29073;29074;29075 29068 10 10112000 173850000 59168000 LITQTFSHHNQLAQK KTDFFIGGEEGMAEKLITQTFSHHNQLAQK LITQTFSHHNQLAQKTRREKRARQEAERRE K L I Q K T 1 0 1 0 0 3 0 0 2 1 2 1 0 1 0 1 2 0 0 0 0 0 15 0 1764.9271 Q9Y266 Q9Y266 54 68 NUDC Nuclear migration protein nudC yes yes 4 0.027457 46.282 By MS/MS 5 0 1 1 17535000 0 0 17535000 8109 2235 8444 34623 29076 29076 1 0 0 2445800 LITYLDQTTQK YLHHVNKRLEEEADRLITYLDQTTQKSLIA EADRLITYLDQTTQKSLIATVEKQLLGEHL R L I Q K S 0 0 0 1 0 2 0 0 0 1 2 1 0 0 0 0 3 0 1 0 0 0 11 0 1322.7082 Q13620 Q13620 428 438 CUL4B Cullin-4B yes yes 2 0.0087747 93.598 By matching By MS/MS 2.5 0.5 1 1 1 1 8716900 0 3056400 5660600 8110 1264 8445 34624;34625 29077 29077 1 0 1376300 1097900 LIVAYVDDLDR KRYLVLDCVPEERRKLIVAYVDDLDRRGPP ERRKLIVAYVDDLDRRGPPPPPTASEPTRR K L I D R R 1 1 0 3 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 2 0 0 11 0 1290.682 O14776 O14776 1070 1080 TCERG1 Transcription elongation regulator 1 yes yes 2 0.0087484 93.649 By MS/MS 1.5 0.5 1 1 2 19058000 0 0 19058000 8111 145 8446 34626;34627 29078 29078 1 0 0 4229900 LIVDHNIADYMTAK MYEKIDLTLLNRLLRLIVDHNIADYMTAKN RLIVDHNIADYMTAKNNVVINYKDMNHTNS R L I A K N 2 0 1 2 0 0 0 0 1 2 1 1 1 0 0 0 1 0 1 1 0 0 14 0 1602.8076 Q6P2Q9 Q6P2Q9 999 1012 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 2.102E-05 162.32 By matching By MS/MS By MS/MS 1.29 0.452 5 2 1 3 3 108390000 693760 36458000 71234000 8112 1490 8447 34628;34629;34630;34631;34632;34633;34634 29079;29080;29081;29082 29080 4 693760 17750000 15375000 LIVDVIR NAEMDARTILLNTKRLIVDVIRFQPGETLT TILLNTKRLIVDVIRFQPGETLTEILETPA R L I I R F 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 7 0 826.52764 P46940 P46940 1391 1397 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.011689 117.7 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 28678000 0 14037000 14641000 8113 835 8448 34635;34636;34637;34638 29083;29084;29085 29084 3 0 6321100 3179600 LIVENLSSR SGRDKYGPPVRTEYRLIVENLSSRCSWQDL VRTEYRLIVENLSSRCSWQDLKDFMRQAGE R L I S R C 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 9 0 1029.5819 Q13243;Q13247;Q08170 Q13247 112 120 SRSF5;SRSF6;SRSF4 Serine/arginine-rich splicing factor 5;Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4 no no 2 1.6517E-25 155.75 By MS/MS By MS/MS By MS/MS 4.2 2.01 3 2 3 2 3 2 3 6 6 512670000 16352000 320430000 175890000 8114 1234;1233 8449 34639;34640;34641;34642;34643;34644;34645;34646;34647;34648;34649;34650;34651;34652;34653 29086;29087;29088;29089;29090;29091;29092;29093;29094;29095;29096;29097;29098 29094 13 16459000 112260000 27247000 LIVNVNDLR YQSKVRELISDNQYRLIVNVNDLRRKNEKR SDNQYRLIVNVNDLRRKNEKRANRLLNNAF R L I L R R 0 1 2 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1054.6135 P25205 P25205 47 55 MCM3 DNA replication licensing factor MCM3 yes yes 2 0.002059 105.57 By matching By MS/MS 6.25 1.92 1 2 1 1 3 17237000 1860000 0 15377000 8115 655 8450 34654;34655;34656;34657 29099;29100;29101 29099 3 4008600 0 2806700 LIVNVNDLRR YQSKVRELISDNQYRLIVNVNDLRRKNEKR DNQYRLIVNVNDLRRKNEKRANRLLNNAFE R L I R R K 0 2 2 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 10 1 1210.7146 P25205 P25205 47 56 MCM3 DNA replication licensing factor MCM3 yes yes 3 0.0011604 94.309 By MS/MS 2 0 1 1 2639100 0 2639100 0 8116 655 8451 34658 29102 29102 1 0 1188400 0 LIVTQTMK ______________________________ ______________________________ - L I M K G 0 0 0 0 0 1 0 0 0 1 1 1 1 0 0 0 2 0 0 1 0 0 8 0 932.53649 CON__P02754 CON__P02754 1 8 yes yes 2 0.0036854 104.21 By MS/MS 5.78 3.12 1 1 1 1 1 1 1 2 9 185960000 185960000 0 0 + 8117 43 8452 34659;34660;34661;34662;34663;34664;34665;34666;34667 29103;29104;29105;29106;29107 29103 5 203130000 0 0 LIVTSATLDAVK FGLLKKTVQKRQDMKLIVTSATLDAVKFSQ DMKLIVTSATLDAVKFSQYFYEAPIFTIPG K L I V K F 2 0 0 1 0 0 0 0 0 1 2 1 0 0 0 1 2 0 0 2 0 0 12 0 1229.7231 Q14562 Q14562 713 724 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 0.016143 87.298 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 24323000 4247600 6811500 13264000 8118 1304 8453 34668;34669;34670;34671 29108;29109;29110 29108 3 5117800 3067300 2909900 LIWEVWMPFVR LSHGGQDLSADAFHRLIWEVWMPFVRNIVT AFHRLIWEVWMPFVRNIVTQWQPRNCDPMV R L I V R N 0 1 0 0 0 0 1 0 0 1 1 0 1 1 1 0 0 2 0 2 0 0 11 0 1474.7795 Q9UBB9 Q9UBB9 480 490 TFIP11 Tuftelin-interacting protein 11 yes yes 2 9.3241E-05 141.39 By matching By MS/MS 2 0.816 1 1 1 1 2 4646200 68196 0 4578000 8119 2129 8454 34672;34673;34674 29111;29112 29111 2 68196 0 1001600 LIYNTHMADEK GHIDQFLIATFMQLRLIYNTHMADEKLEKD MQLRLIYNTHMADEKLEKDEIIKLYSCIIG R L I E K L 1 0 1 1 0 0 1 0 1 1 1 1 1 0 0 0 1 0 1 0 0 0 11 0 1333.6336 Q14008 Q14008 1594 1604 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0023196 108.15 By MS/MS 1 0 1 1 14972000 0 0 14972000 8120 1279 8455 34675 29113 29113 1 0 0 3225900 LIYPVGFWR TVDSILQTDDATLGKLIYPVGFWRSKVKYI DATLGKLIYPVGFWRSKVKYIKQTSAILQQ K L I W R S 0 1 0 0 0 0 0 1 0 1 1 0 0 1 1 0 0 1 1 1 0 0 9 0 1149.6335 P78549 P78549 175 183 NTHL1 Endonuclease III-like protein 1 yes yes 2 0.00048146 135.35 By MS/MS By MS/MS 5.75 1.09 1 2 1 2 2 31517000 0 5385400 26132000 8121 1090 8456 34676;34677;34678;34679 29114;29115 29114 2 0 1854100 3939100 LIYQWVSR SSFLIMWRRPEEWGKLIYQWVSRSGQNNSV RPEEWGKLIYQWVSRSGQNNSVFTLYELTN K L I S R S 0 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 1 0 0 8 0 1063.5815 Q9BRG1 Q9BRG1 110 117 VPS25 Vacuolar protein-sorting-associated protein 25 yes yes 2 0.0013392 117.18 By MS/MS 7 0 1 1 4770100 0 4770100 0 8122 1888 8457 34680 29116 29116 1 0 2739000 0 LKAEAELLQQQK KMLKEKMQAVQEATRLKAEAELLQQQKELA ATRLKAEAELLQQQKELAQEQARRLQEDKE R L K Q K E 2 0 0 0 0 3 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1397.7878 Q15149 Q15149 2462 2473 PLEC Plectin yes yes 2;3 2.8736E-24 196.88 By MS/MS By MS/MS 1 0 3 2 1 59347000 0 35485000 23862000 8123 1348 8458 34681;34682;34683 29117;29118;29119 29117 3 0 17345000 5141400 LKAEFQEEAK EAAKTIQDKNKEIERLKAEFQEEAKRRWEY KEIERLKAEFQEEAKRRWEYENELSKVRNN R L K A K R 2 0 0 0 0 1 3 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 10 1 1191.6136 P15924 P15924 1330 1339 DSP Desmoplakin yes yes 2 0.0022931 139.74 By MS/MS 1 0 1 1 5930300 0 5930300 0 8124 572 8459 34684 29120 29120 1 0 2898600 0 LKAEFQEEAKR EAAKTIQDKNKEIERLKAEFQEEAKRRWEY EIERLKAEFQEEAKRRWEYENELSKVRNNY R L K K R R 2 1 0 0 0 1 3 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 11 2 1347.7147 P15924 P15924 1330 1340 DSP Desmoplakin yes yes 3 0.00010208 129.82 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 20409000 5890200 4828400 9690100 8125 572 8460 34685;34686;34687;34688 29121;29122 29122 2 5890200 2360100 2096400 LKAEPAAPPAAPSTPAPPPAVPK KLKRLDEKFGAPDKRLKAEPAAPPAAPSTP PAAPSTPAPPPAVPKELPAPPAPPPASAPT R L K P K E 7 0 0 0 0 0 1 0 0 0 1 2 0 0 9 1 1 0 0 1 0 0 23 1 2174.2099 P48634 P48634 504 526 PRRC2A Protein PRRC2A yes yes 3 0.0032288 46.839 By MS/MS 1 0 1 1 8220000 0 0 8220000 8126 844 8461 34689 29123 29123 1 0 0 1771100 LKCDEWSVNSVGK ECKPVKWCALSHHERLKCDEWSVNSVGKIE ERLKCDEWSVNSVGKIECVSAETTEDCIAK R L K G K I 0 0 1 1 1 0 1 1 0 0 1 2 0 0 0 2 0 1 0 2 0 0 13 1 1520.7293 P02787 P02787 372 384 TF Serotransferrin yes yes 2;3 6.3409E-44 220.25 By MS/MS By matching 9.33 0.471 2 1 2 1 26281000 26011000 269880 0 8127 399 8462 34690;34691;34692 29124;29125 29125 2 14600000 1365300 0 LKDDEVAQLKK CILNARGLTSVINQKLKDDEVAQLKKSADT INQKLKDDEVAQLKKSADTLWDIQKDLKDL K L K K K S 1 0 0 2 0 1 1 0 0 0 2 3 0 0 0 0 0 0 0 1 0 0 11 2 1285.7242 P07195 P07195 309 319 LDHB L-lactate dehydrogenase B chain yes yes 3 0.017548 72.272 By MS/MS By matching 6.5 0.5 1 1 1 1 6696100 0 5748500 947630 8128 452 8463 34693;34694 29126 29126 1 0 1989900 168150 LKDETLQPFFEGLLPR QELCEYMGLPKLNARLKDETLQPFFEGLLP KDETLQPFFEGLLPRDNPRNTRFAINFFTS R L K P R D 0 1 0 1 0 1 2 1 0 0 4 1 0 2 2 0 1 0 0 0 0 0 16 1 1902.0251 Q9HCG8 Q9HCG8 603 618 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 3 9.4952E-06 118.21 By MS/MS 2 0 1 1 7088200 0 0 7088200 8129 2012 8464 34695 29127 29127 1 0 0 1601800 LKDIFMFITR FRIYAPEAPYTSPDKLKDIFMFITRQLKGL TSPDKLKDIFMFITRQLKGLEDTKSPQFNR K L K T R Q 0 1 0 1 0 0 0 0 0 2 1 1 1 2 0 0 1 0 0 0 0 0 10 1 1282.7108 Q9NTI5 Q9NTI5 103 112 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.035866 56.936 By MS/MS 1.5 0.5 1 1 2 4970600 0 0 4970600 8130 2053 8465 34696;34697 29128;29129 29128 2 0 0 1088900 LKDLEALLNSK RNTKKEGDLIAAQARLKDLEALLNSKEAAL AQARLKDLEALLNSKEAALSTALSEKRTLE R L K S K E 1 0 1 1 0 0 1 0 0 0 4 2 0 0 0 1 0 0 0 0 0 0 11 1 1242.7184 P02545 P02545 134 144 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 1.8169E-72 239.36 By matching By MS/MS By MS/MS 3.32 1.69 4 2 4 5 2 1 1 3 5 11 660130000 3250200 144460000 512420000 8131 387 8466 34698;34699;34700;34701;34702;34703;34704;34705;34706;34707;34708;34709;34710;34711;34712;34713;34714;34715;34716 29130;29131;29132;29133;29134;29135;29136;29137;29138;29139;29140;29141;29142;29143;29144;29145 29139 16 3058300 56046000 95242000 LKDLNSQADSLMTSSAFDTSQVK KHQLLEADISAHEDRLKDLNSQADSLMTSS DSLMTSSAFDTSQVKDKRDTINGRFQKIKS R L K V K D 2 0 1 3 0 2 0 0 0 0 3 2 1 1 0 5 2 0 0 1 0 0 23 1 2485.2006 Q13813 Q13813 1714 1736 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.00092404 57.922 By MS/MS By matching 1.33 0.471 2 1 2 1 20344000 0 16148000 4196200 8132 1268 8467;8468 34717;34718;34719 29146;29147 29146 584 2 0 7892800 948270 LKDLYIRPNIAQK KQDSLVINLNRSNPKLKDLYIRPNIAQKRM PKLKDLYIRPNIAQKRMQGSLEAHVNGFRF K L K Q K R 1 1 1 1 0 1 0 0 0 2 2 2 0 0 1 0 0 0 1 0 0 0 13 2 1570.9195 Q9Y5B9 Q9Y5B9 662 674 SUPT16H FACT complex subunit SPT16 yes yes 2;3 0.013645 70.628 By MS/MS 2 0 2 2 13443000 0 13443000 0 8133 2296 8469 34720;34721 29148;29149 29148 2 0 6053600 0 LKDQNIFVSR DMAKRERFELLKHQKLKDQNIFVSRTRLCL LKHQKLKDQNIFVSRTRLCLHNLPKAVDDK K L K S R T 0 1 1 1 0 1 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 1 1218.6721 Q9NW13 Q9NW13 477 486 RBM28 RNA-binding protein 28 yes yes 3 0.0015816 93.839 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 20222000 0 4419100 15803000 8134 2075 8470 34722;34723;34724 29150;29151 29151 2 0 1990000 3390000 LKDRDPEFYK RRKGRASEHKDQLSRLKDRDPEFYKFLQEN DQLSRLKDRDPEFYKFLQENDQSLLNFSDS R L K Y K F 0 1 0 2 0 0 1 0 0 0 1 2 0 1 1 0 0 0 1 0 0 0 10 2 1309.6667 Q9Y3T9 Q9Y3T9 76 85 NOC2L Nucleolar complex protein 2 homolog yes yes 3 0.058843 54.198 By MS/MS 2 0.816 1 1 1 3 38065000 0 0 38065000 8135 2277 8471 34725;34726;34727 29152 29152 1 0 0 7563500 LKDVLLQVDDER ERQAACKQVRRTEKKLKDVLLQVDDERRNA EKKLKDVLLQVDDERRNAEQYKDQADKAST K L K E R R 0 1 0 3 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 1 1441.7777 P35579 P35579 1844 1855 MYH9 Myosin-9 yes yes 3 0.048453 50.843 By MS/MS 1 0 1 1 5042200 0 5042200 0 8136 752 8472 34728 29153 29153 1 0 2464500 0 LKDVLLQVDDERR ERQAACKQVRRTEKKLKDVLLQVDDERRNA KKLKDVLLQVDDERRNAEQYKDQADKASTR K L K R R N 0 2 0 3 0 1 1 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 13 2 1597.8788 P35579 P35579 1844 1856 MYH9 Myosin-9 yes yes 3;4 1.7401E-05 157.52 By MS/MS By MS/MS 1.5 0.5 3 3 3 3 144050000 0 97067000 46982000 8137 752 8473 34729;34730;34731;34732;34733;34734 29154;29155;29156;29157 29154 4 0 47315000 10196000 LKECCDKPLLEK LAKYICDNQDTISSKLKECCDKPLLEKSHC SSKLKECCDKPLLEKSHCIAEVEKDAIPEN K L K E K S 0 0 0 1 2 0 2 0 0 0 3 3 0 0 1 0 0 0 0 0 0 0 12 2 1531.7738 CON__P02769 CON__P02769 298 309 yes yes 2;3 6.1487E-11 184.55 By MS/MS 4.8 0.748 2 2 1 5 52368000 52368000 0 0 + 8138 45 8474 34735;34736;34737;34738;34739 29158;29159;29160 29159 3 43412000 0 0 LKECCEKPLLEK LAKYICENQDSISSKLKECCEKPLLEKSHC SSKLKECCEKPLLEKSHCIAEVENDEMPAD K L K E K S 0 0 0 0 2 0 3 0 0 0 3 3 0 0 1 0 0 0 0 0 0 0 12 2 1545.7895 CON__P02768-1;P02768 CON__P02768-1 299 310 ALB Serum albumin yes no 3 3.57E-05 138.77 By MS/MS 6.5 2.5 1 1 2 198570000 198570000 0 0 + 8139 44 8475 34740;34741 29161;29162;29163 29162 3 117820000 0 0 LKEENFFGPK PPEAQFKAQGRIYGKLKEENFFGPKEEVKL RIYGKLKEENFFGPKEEVKLETHIRVPASA K L K P K E 0 0 1 0 0 0 2 1 0 0 1 2 0 2 1 0 0 0 0 0 0 0 10 1 1207.6237 Q9NZI8 Q9NZI8 474 483 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 0.0013405 130.96 By MS/MS By MS/MS 4.5 1.99 1 1 4 1 2 1 4 7 7 248660000 0 105320000 143340000 8140 2104 8476 34742;34743;34744;34745;34746;34747;34748;34749;34750;34751;34752;34753;34754;34755 29164;29165;29166;29167;29168;29169;29170 29164 7 0 47015000 27383000 LKEENFFNPK PPEAQFKAQGRIFGKLKEENFFNPKEEVKL RIFGKLKEENFFNPKEEVKLEAHIRVPSST K L K P K E 0 0 2 0 0 0 2 0 0 0 1 2 0 2 1 0 0 0 0 0 0 0 10 1 1264.6452 Q9Y6M1 Q9Y6M1 496 505 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 3 0.0055241 80.706 By MS/MS By matching 3.5 0.5 1 1 1 1 10770000 0 7813200 2957000 8141 2315 8477 34756;34757 29171 29171 1 0 3330800 482980 LKEGDTIIVPGVEGPIVTQIR PGMGTTIDVILINGRLKEGDTIIVPGVEGP IIVPGVEGPIVTQIRGLLLPPPMKELRVKN R L K I R G 0 1 0 1 0 1 2 3 0 4 1 1 0 0 2 0 2 0 0 3 0 0 21 1 2233.2682 O60841 O60841 882 902 EIF5B Eukaryotic translation initiation factor 5B yes yes 2;3 9.98E-17 169.92 By MS/MS By MS/MS 1.71 0.7 3 3 1 2 5 86714000 0 19511000 67203000 8142 236 8478 34758;34759;34760;34761;34762;34763;34764 29172;29173;29174;29175;29176;29177 29175 6 0 8959600 14769000 LKEIFMQVEDERR ERAAANKLVRRTEKKLKEIFMQVEDERRHA KKLKEIFMQVEDERRHADQYKEQMEKANAR K L K R R H 0 2 0 1 0 1 3 0 0 1 1 1 1 1 0 0 0 0 0 1 0 0 13 2 1691.8665 P35580 P35580 1851 1863 MYH10 Myosin-10 yes yes 3 0.0062099 78.324 By MS/MS 1 0 1 1 12533000 0 0 12533000 8143 753 8479 34765 29178 29178 1 0 0 2700400 LKELESQVSGLEK DVQASQAEADQQQTRLKELESQVSGLEKEA TRLKELESQVSGLEKEAIELREAVEQQKVK R L K E K E 0 0 0 0 0 1 3 1 0 0 3 2 0 0 0 2 0 0 0 1 0 0 13 1 1458.793 Q9P2E9 Q9P2E9 989 1001 RRBP1 Ribosome-binding protein 1 yes yes 2 0.02462 105.46 By MS/MS 1.5 0.5 1 1 2 19199000 0 0 19199000 8144 2122 8480 34766;34767 29179 29179 1 0 0 4229900 LKEQSIFGDHRDEEEETHMK RRKQQTLEAEEAKRRLKEQSIFGDHRDEEE IFGDHRDEEEETHMKKSESEVEEAAAIIAQ R L K M K K 0 1 0 2 0 1 5 1 2 1 1 2 1 1 0 1 1 0 0 0 0 0 20 2 2457.1231 Q16643 Q16643 251 270 DBN1 Drebrin yes yes 4 0.01646 43.696 By MS/MS 2 0.816 1 1 1 3 14193000 0 0 14193000 8145 1395 8481 34768;34769;34770 29180 29180 1 0 0 3084700 LKESQTQDNITVR IFGPLVKLEADYDKKLKESQTQDNITVRWD KKLKESQTQDNITVRWDLGLNKKRIAYFTL K L K V R W 0 1 1 1 0 2 1 0 0 1 1 1 0 0 0 1 2 0 0 1 0 0 13 1 1530.8002 Q92900 Q92900 320 332 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.022541 60.196 By matching By MS/MS 1.5 0.5 1 1 1 1 6216000 1993000 4223000 0 8146 1729 8482 34771;34772 29181 29181 1 1993000 1901700 0 LKETGYVVERPSTTK GNRESDGFREEKNYKLKETGYVVERPSTTK LKETGYVVERPSTTKDKHKEEDKNSERITV K L K T K D 0 1 0 0 0 0 2 1 0 0 1 2 0 0 1 1 3 0 1 2 0 0 15 2 1706.9203 Q9NYF8 Q9NYF8 461 475 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2;3;4 4.6243E-08 170.11 By MS/MS By MS/MS 2.18 0.936 3 4 3 1 4 7 140910000 0 16681000 124230000 8147 2097 8483 34773;34774;34775;34776;34777;34778;34779;34780;34781;34782;34783 29182;29183;29184;29185;29186;29187 29185 6 0 7359300 27344000 LKEVFSMAGVVVR TVFVANLDYKVGWKKLKEVFSMAGVVVRAD KKLKEVFSMAGVVVRADILEDKDGKSRGIG K L K V R A 1 1 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 4 0 0 13 1 1433.8065 P52272 P52272 220 232 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 0.00076905 105 By MS/MS By MS/MS 3 0.943 1 1 4 3 5 4 115820000 0 73271000 42545000 8148 902 8484;8485 34784;34785;34786;34787;34788;34789;34790;34791;34792 29188;29189;29190;29191;29192;29193;29194 29189 428 7 0 29697000 8327600 LKEYEAAVEQLK AQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ QSKLKEYEAAVEQLKSEQIRAQAEERRKTL K L K L K S 2 0 0 0 0 1 3 0 0 0 2 2 0 0 0 0 0 0 1 1 0 0 12 1 1419.7609 Q5T9A4 Q5T9A4 93 104 ATAD3B ATPase family AAA domain-containing protein 3B yes yes 3 0.052377 49.298 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 36411000 0 6238100 30173000 8149 1456 8486 34793;34794;34795;34796 29195;29196 29195 2 0 2659300 6126100 LKGDDLQAIK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ SKSGKLKGDDLQAIKKELTQIKQKVDSLLE K L K I K K 1 0 0 2 0 1 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1099.6237 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 188 197 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 0.03013 100.57 By MS/MS By MS/MS 5.33 1.25 1 2 2 1 3 3 343150000 0 77588000 265570000 8150 467 8487 34797;34798;34799;34800;34801;34802 29197;29198;29199 29197 3 0 25900000 39059000 LKGDDLQAIKK FNSKSGQRGSSKSGKLKGDDLQAIKKELTQ KSGKLKGDDLQAIKKELTQIKQKVDSLLEN K L K K K E 1 0 0 2 0 1 0 1 0 1 2 3 0 0 0 0 0 0 0 0 0 0 11 2 1227.7187 P07910 P07910 188 198 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2;3 0.00067064 119.22 By MS/MS By MS/MS 4.64 1.87 1 1 1 1 3 2 2 7 4 1440600000 0 725480000 715160000 8151 467 8488 34803;34804;34805;34806;34807;34808;34809;34810;34811;34812;34813 29200;29201;29202;29203;29204;29205;29206;29207;29208;29209 29204 10 0 256230000 103790000 LKGEATVSFDDPPSAK GQPMINLYTDRETGKLKGEATVSFDDPPSA KGEATVSFDDPPSAKAAIDWFDGKEFSGNP K L K A K A 2 0 0 2 0 0 1 1 0 0 1 2 0 1 2 2 1 0 0 1 0 0 16 1 1660.8308 P35637 P35637 333 348 FUS RNA-binding protein FUS yes yes 2;3 0.028565 84.759 By MS/MS By MS/MS 4 1 2 2 2 2 139000000 0 22796000 116210000 8152 756 8489 34814;34815;34816;34817 29210;29211;29212;29213 29210 4 0 6741200 21561000 LKGELESSDQVR KSRVTVKHLEEIVEKLKGELESSDQVREHT VEKLKGELESSDQVREHTSHLEAELEKHMA K L K V R E 0 1 0 1 0 1 2 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 12 1 1359.6994 Q9P2E9 Q9P2E9 1184 1195 RRBP1 Ribosome-binding protein 1 yes yes 2;3 0.020076 82.171 By matching By matching By MS/MS 1.86 1.12 4 1 1 1 1 1 5 65875000 2052600 508590 63314000 8153 2122 8490 34818;34819;34820;34821;34822;34823;34824 29214;29215;29216 29214 3 2052600 248590 12919000 LKHYGPGWVSMANAGK GKSIYGERFPDENFKLKHYGPGWVSMANAG KHYGPGWVSMANAGKDTNGSQFFITTVKTA K L K G K D 2 0 1 0 0 0 0 3 1 0 1 2 1 0 1 1 0 1 1 1 0 0 16 1 1714.8613 P23284 P23284 130 145 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 3 0.05508 38.093 By MS/MS By matching 7 0 2 1 1 11413000 0 6837700 4575100 8154 640 8491 34825;34826 29217 29217 1 0 3926300 811820 LKLEAELGNMQGLVEDFK INNLRRQLETLGQEKLKLEAELGNMQGLVE EAELGNMQGLVEDFKNKYEDEINKRTEMEN K L K F K N 1 0 1 1 0 1 3 2 0 0 4 2 1 1 0 0 0 0 0 1 0 0 18 1 2033.0503 CON__P05787;P05787 CON__P05787 159 176 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.3896E-50 220.6 By matching By MS/MS 3.33 1.43 2 2 1 4 3 1 11 523900000 0 916820 522980000 + 8155 49 8492;8493 34827;34828;34829;34830;34831;34832;34833;34834;34835;34836;34837;34838 29218;29219;29220;29221;29222;29223;29224;29225;29226;29227;29228 29226 28 11 0 448130 86289000 LKLEAELGNMQGLVEDFKNK INNLRRQLETLGQEKLKLEAELGNMQGLVE ELGNMQGLVEDFKNKYEDEINKRTEMENEF K L K N K Y 1 0 2 1 0 1 3 2 0 0 4 3 1 1 0 0 0 0 0 1 0 0 20 2 2275.1882 CON__P05787;P05787 CON__P05787 159 178 KRT8 Keratin, type II cytoskeletal 8 yes no 3 1.6643E-05 84.975 By MS/MS 4 0 1 1 12400000 0 0 12400000 + 8156 49 8494 34839 29229 29229 1 0 0 2025300 LKLEQIDGHIAEHNSK QENEHALQKDALSIKLKLEQIDGHIAEHNS KLEQIDGHIAEHNSKIKYWHKEISKISLHP K L K S K I 1 0 1 1 0 1 2 1 2 2 2 2 0 0 0 1 0 0 0 0 0 0 16 1 1830.9588 Q9NTJ3 Q9NTJ3 1016 1031 SMC4 Structural maintenance of chromosomes protein 4 yes yes 4 0.005301 61.165 By MS/MS 1.5 0.5 1 1 2 13942000 0 0 13942000 8157 2054 8495 34840;34841 29230 29230 1 0 0 3069400 LKLEVEEK GPLELGSEVSTSVMRLKLEVEEKKQAMLLL VSTSVMRLKLEVEEKKQAMLLLQRALAQQR R L K E K K 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 8 1 986.56481 Q9UPN4 Q9UPN4 576 583 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.073788 94.302 By MS/MS 2 0.816 1 1 1 3 31855000 0 0 31855000 8158 2215 8496 34842;34843;34844 29231 29231 1 0 0 6902300 LKNKHEAMITDLEER TNLTEEEEKSKSLAKLKNKHEAMITDLEER LKNKHEAMITDLEERLRREEKQRQELEKTR K L K E R L 1 1 1 1 0 0 3 0 1 1 2 2 1 0 0 0 1 0 0 0 0 0 15 2 1825.9356 P35579 P35579 1021 1035 MYH9 Myosin-9 yes yes 3 0.059615 44.567 By MS/MS 1.5 0.5 1 1 2 8918900 0 8918900 0 8159 752 8497 34845;34846 29232 29232 1 0 4227000 0 LKNTLTQTTENLR NLTRENRSLSEEIKRLKNTLTQTTENLRRV KRLKNTLTQTTENLRRVEEDIQQQKATGSE R L K L R R 0 1 2 0 0 1 1 0 0 0 3 1 0 0 0 0 4 0 0 0 0 0 13 1 1530.8366 P15924 P15924 1412 1424 DSP Desmoplakin yes yes 2;3 3.7174E-71 240.1 By matching By MS/MS By MS/MS 1 0 6 2 2 2 64835000 8197600 25848000 30790000 8160 572 8498 34847;34848;34849;34850;34851;34852 29233;29234;29235;29236 29236 4 8197600 12634000 6634100 LKNTSEQDQPMGGWEMIR NVCIEEIDVDGKFIRLKNTSEQDQPMGGWE TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY R L K I R K 0 1 1 1 0 2 2 2 0 1 1 1 2 0 1 1 1 1 0 0 0 0 18 1 2118.9827 P20700 P20700 456 473 LMNB1 Lamin-B1 yes yes 2;3 1.652E-113 263.59 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 42857000 0 14377000 28480000 8161 619 8499 34853;34854;34855;34856 29237;29238;29239 29239 3 0 6181200 5523900 LKPDPNTLCDEFK ECFLSHKDDSPDLPKLKPDPNTLCDEFKAD PKLKPDPNTLCDEFKADEKKFWGKYLYEIA K L K F K A 0 0 1 2 1 0 1 0 0 0 2 2 0 1 2 0 1 0 0 0 0 0 13 1 1575.7603 CON__P02769 CON__P02769 139 151 yes yes 2;3 0.0015407 130.56 By MS/MS 4 0 2 2 21257000 21257000 0 0 + 8162 45 8500 34857;34858 29240;29241 29240 2 16584000 0 0 LKPDPNTLCDEFKADEK ECFLSHKDDSPDLPKLKPDPNTLCDEFKAD PDPNTLCDEFKADEKKFWGKYLYEIARRHP K L K E K K 1 0 1 3 1 0 2 0 0 0 2 3 0 1 2 0 1 0 0 0 0 0 17 2 2018.9619 CON__P02769 CON__P02769 139 155 yes yes 3 2.2004E-06 149.09 By MS/MS 4 0 1 1 9436500 9436500 0 0 + 8163 45 8501 34859 29242 29242 1 7362100 0 0 LKPKPIDVQVITHHMQR VDARLKLSEELSGGRLKPKPIDVQVITHHM PKPIDVQVITHHMQRYAVWFGGSMLASTPE R L K Q R Y 0 1 0 1 0 2 0 0 2 2 1 2 1 0 2 0 1 0 0 2 0 0 17 2 2039.1462 P61158 P61158 358 374 ACTR3 Actin-related protein 3 yes yes 4 0.00062644 84.14 By MS/MS 5 0 1 1 16055000 0 16055000 0 8164 980 8502 34860 29243 29243 1 0 4138400 0 LKPTDVGLLAVIANNIITINK GRTEEALQLYNQIIKLKPTDVGLLAVIANN GLLAVIANNIITINKDQNVFDSKKKVKLTN K L K N K D 2 0 3 1 0 0 0 1 0 4 3 2 0 0 1 0 2 0 0 2 0 0 21 1 2219.3253 O76094 O76094 255 275 SRP72 Signal recognition particle subunit SRP72 yes yes 3 0.011029 44.258 By MS/MS 3 0.816 1 1 1 3 8657300 0 0 8657300 8165 296 8503 34861;34862;34863 29244 29244 1 0 0 1661000 LKQDTYGDIYNFPIHAFDK AAQLDNAIEKELLERLKQDTYGDIYNFPIH TYGDIYNFPIHAFDKALEQQEAESDSSDTE R L K D K A 1 0 1 3 0 1 0 1 1 2 1 2 0 2 1 0 1 0 2 0 0 0 19 1 2284.1164 Q9BXY0 Q9BXY0 170 188 MAK16 Protein MAK16 homolog yes yes 3;4 1.4833E-09 127.49 By MS/MS 5 0 2 2 30730000 0 0 30730000 8166 1931 8504 34864;34865 29245;29246 29246 2 0 0 4286300 LKQESDQLVLNQHPASDK IRMSQLEVKEKELNKLKQESDQLVLNQHPA ESDQLVLNQHPASDKIEAYMDTLQTQWSWI K L K D K I 1 0 1 2 0 3 1 0 1 0 3 2 0 0 1 2 0 0 0 1 0 0 18 1 2049.0491 P15924 P15924 329 346 DSP Desmoplakin yes yes 3;4 0.00021758 90.654 By MS/MS By MS/MS 1 0 3 2 1 19062000 0 9679400 9382300 8167 572 8505 34866;34867;34868 29247;29248;29249 29249 3 0 4731100 2021600 LKQVEDEKNSFR LLQEENRQKLSLSTKLKQVEDEKNSFREQL STKLKQVEDEKNSFREQLEEEEEAKHNLEK K L K F R E 0 1 1 1 0 1 2 0 0 0 1 2 0 1 0 1 0 0 0 1 0 0 12 2 1491.7682 P35579 P35579 1331 1342 MYH9 Myosin-9 yes yes 2;3 1.4291E-05 147.24 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 53662000 0 46468000 7194500 8168 752 8506 34869;34870;34871;34872 29250;29251;29252 29252 3 0 22599000 1550200 LKQVLLHQQAK APNHAVVSRMDKVERLKQVLLHQQAKFGRN KVERLKQVLLHQQAKFGRNGSDCPDKFCLF R L K A K F 1 0 0 0 0 3 0 0 1 0 3 2 0 0 0 0 0 0 0 1 0 0 11 1 1304.7929 P02788 P02788 628 638 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 3 4.5443E-08 160.75 By MS/MS 5 3.74 1 1 1 1 1 5 14593000 14593000 0 0 8169 400 8507 34873;34874;34875;34876;34877 29253;29254;29255;29256;29257;29258;29259 29258 7 16198000 0 0 LKSELVANNVTLPAGEQR MPEFLEDPSVLTKDKLKSELVANNVTLPAG ELVANNVTLPAGEQRKDVYVQLYLQHLTAR K L K Q R K 2 1 2 0 0 1 2 1 0 0 3 1 0 0 1 1 1 0 0 2 0 0 18 1 1938.0534 P42166;P42167 P42166 16 33 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 4.1385E-39 207.52 By MS/MS By MS/MS 3 1.07 1 1 2 3 1 6 75552000 0 12104000 63449000 8170 798;799 8508 34878;34879;34880;34881;34882;34883;34884 29260;29261;29262;29263;29264 29264 5 0 4016700 11224000 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK RYYGGGSEGGRAPKRLKTDNAGDQHGGGGG AGGGGGGENYDDPHKTPASPVVHIRGLIDG R L K H K T 4 0 2 4 0 1 1 17 2 0 1 2 0 0 1 0 1 0 1 0 0 0 37 1 3221.3743 P14866 P14866 61 97 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 4;5 1.7494E-39 103.17 By MS/MS By MS/MS 3.53 1.59 3 4 4 2 2 5 10 127490000 0 12965000 114520000 8171 565 8509 34885;34886;34887;34888;34889;34890;34891;34892;34893;34894;34895;34896;34897;34898;34899 29265;29266;29267;29268;29269;29270;29271;29272;29273;29274;29275;29276;29277;29278;29279 29274 15 0 5211700 21340000 LKVPEWVDTVK EFVRALAAFLKKSGKLKVPEWVDTVKLAKH KSGKLKVPEWVDTVKLAKHKELAPYDENWF K L K V K L 0 0 0 1 0 0 1 0 0 0 1 2 0 0 1 0 1 1 0 3 0 0 11 1 1312.7391 P39019 P39019 28 38 RPS19 40S ribosomal protein S19 yes yes 2;3 0.00012767 118.9 By MS/MS By MS/MS 7.6 0.49 2 3 2 3 81939000 0 29603000 52336000 8172 777 8510 34900;34901;34902;34903;34904 29280;29281;29282;29283;29284 29282 5 0 13794000 8092400 LKVPPAINQFTQALDR RYIRLQRQRAILYKRLKVPPAINQFTQALD KVPPAINQFTQALDRQTATQLLKLAHKYRP R L K D R Q 2 1 1 1 0 2 0 0 0 1 2 1 0 1 2 0 1 0 0 1 0 0 16 1 1810.0101 P62424 P62424 74 89 RPL7A 60S ribosomal protein L7a yes yes 2;3 5.7891E-19 185.67 By MS/MS By MS/MS 4.81 2.07 2 1 1 2 2 5 2 1 7 9 626630000 0 342280000 284340000 8173 1026 8511 34905;34906;34907;34908;34909;34910;34911;34912;34913;34914;34915;34916;34917;34918;34919;34920 29285;29286;29287;29288;29289;29290;29291;29292;29293;29294;29295;29296;29297;29298;29299;29300 29296 15 0 119390000 43172000 LKVSELKEELK ______________________________ NVKKLKVSELKEELKKRRLSDKGLKAELME K L K L K K 0 0 0 0 0 0 3 0 0 0 3 3 0 0 0 1 0 0 0 1 0 0 11 2 1314.7759 Q00839 Q00839 11 21 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 0.054408 55.261 By MS/MS 2 0 1 1 8623200 0 8623200 0 8174 1127 8512 34921 29301 29301 1 0 3883100 0 LKYENELALR ILEIDNARLAADDFRLKYENELALRQSVEA ADDFRLKYENELALRQSVEADINGLRRVLD R L K L R Q 1 1 1 0 0 0 2 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 10 1 1247.6874 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 192 201 KRT13 Keratin, type I cytoskeletal 13 no no 3 1.3304E-05 149.33 By MS/MS By matching 1 0 2 1 1 55558000 54697000 861210 0 + 8175 57;548 8513 34922;34923 29302 29302 1 54697000 420950 0 LKYENEVALR LLQIDNARLAADDFRLKYENEVALRQSVEA ADDFRLKYENEVALRQSVEADINGLRRVLD R L K L R Q 1 1 1 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 10 1 1233.6717 P13645;CON__P13645 P13645 236 245 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 3.3884E-38 214.96 By MS/MS By MS/MS By MS/MS 5.92 2.93 6 6 7 6 6 7 7 8 8 10 30 18 23 27751000000 18395000000 1134300000 8221000000 + 8176 56 8514 34924;34925;34926;34927;34928;34929;34930;34931;34932;34933;34934;34935;34936;34937;34938;34939;34940;34941;34942;34943;34944;34945;34946;34947;34948;34949;34950;34951;34952;34953;34954;34955;34956;34957;34958;34959;34960;34961;34962;34963;34964;34965;34966;34967;34968;34969;34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983;34984;34985;34986;34987;34988;34989;34990;34991;34992;34993;34994 29303;29304;29305;29306;29307;29308;29309;29310;29311;29312;29313;29314;29315;29316;29317;29318;29319;29320;29321;29322;29323;29324;29325;29326;29327;29328;29329;29330;29331;29332;29333;29334;29335;29336;29337;29338;29339;29340;29341;29342;29343;29344;29345;29346;29347;29348;29349;29350;29351;29352;29353;29354;29355;29356;29357;29358;29359;29360;29361;29362;29363;29364;29365;29366;29367;29368;29369;29370;29371;29372;29373;29374;29375;29376;29377 29361 75 17735000000 1026800000 2679500000 LKYSQSDLEQTK ELRQVQSQAHGLQMRLKYSQSDLEQTKTRH QMRLKYSQSDLEQTKTRHLALNLQEKSKLE R L K T K T 0 0 0 1 0 2 1 0 0 0 2 2 0 0 0 2 1 0 1 0 0 0 12 1 1438.7304 Q14683 Q14683 712 723 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00049987 143.24 By MS/MS 1.67 0.471 1 2 3 10031000 0 10031000 0 8177 1312 8515 34995;34996;34997 29378;29379 29379 2 0 4638700 0 LLAAEQTVVR KTLSEEQEKANSVQKLLAAEQTVVRDLKSD NSVQKLLAAEQTVVRDLKSDLCESRQKSEQ K L L V R D 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1098.6397 O95613 O95613 2598 2607 PCNT Pericentrin yes yes 2 0.0010717 110.41 By matching By MS/MS 1.33 0.471 2 1 1 2 14510000 1359200 0 13151000 8178 331 8516 34998;34999;35000 29380 29380 1 1359200 0 2897800 LLAAVEAFYSPPSHDRPR PKDIRLPPPMPPSERLLAAVEAFYSPPSHD AVEAFYSPPSHDRPRNSEGWEQNGLYEFFR R L L P R N 3 2 0 1 0 0 1 0 1 0 2 0 0 1 3 2 0 0 1 1 0 0 18 1 2025.0432 Q8IWX8 Q8IWX8 686 703 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 4 0.0044948 56.817 By MS/MS 2 0 1 1 10680000 0 0 10680000 8179 1577 8517 35001 29381 29381 1 0 0 2413400 LLADQAEAR MEHIHKLKADKARKKLLADQAEARRSKTKE DKARKKLLADQAEARRSKTKEARKRREERL K L L A R R 3 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 985.51926 P84098 P84098 154 162 RPL19 60S ribosomal protein L19 yes yes 2 1.6165E-07 160.75 By MS/MS By MS/MS By MS/MS 7.44 1.71 1 2 3 1 2 1 4 4 325060000 3882300 83958000 237220000 8180 1111 8518 35002;35003;35004;35005;35006;35007;35008;35009;35010 29382;29383;29384;29385;29386 29384 5 8367100 45110000 40463000 LLAEETAATISAIEAMK QHQRELEKLREEKDRLLAEETAATISAIEA AEETAATISAIEAMKNAHREEMERELEKSQ R L L M K N 5 0 0 0 0 0 3 0 0 2 2 1 1 0 0 1 2 0 0 0 0 0 17 0 1760.923 Q6WCQ1 Q6WCQ1 760 776 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.014537 48.547 By MS/MS 2 0 1 1 1174800 0 1174800 0 8181 1507 8519 35011 29387 29387 1 0 529040 0 LLAEGHPDPDAELQR DRKREKEELEEIRQRLLAEGHPDPDAELQR LLAEGHPDPDAELQRMEQEAERRRQPQIKQ R L L Q R M 2 1 0 2 0 1 2 1 1 0 3 0 0 0 2 0 0 0 0 0 0 0 15 0 1659.8216 P49756 P49756 550 564 RBM25 RNA-binding protein 25 yes yes 2;3 0.0004808 96.604 By MS/MS By MS/MS 1.67 0.471 2 4 3 3 112350000 0 20954000 91399000 8182 866 8520 35012;35013;35014;35015;35016;35017 29388;29389;29390;29391;29392 29392 5 0 9541800 20573000 LLAEILR KIQEENVIPREKTLRLLAEILREGNQEVPF IPREKTLRLLAEILREGNQEVPFDVPELWY R L L L R E 1 1 0 0 0 0 1 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 7 0 826.52764 P42704 P42704 995 1001 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 7.8018E-05 160.68 By matching By MS/MS By MS/MS 2 0 3 1 1 1 12296000 905410 4740300 6650700 8183 808 8521 35018;35019;35020 29393;29394 29394 2 1090900 2134600 1502900 LLAGFMGVMNNMR KKKTEKKLAAREEAKLLAGFMGVMNNMRKQ AKLLAGFMGVMNNMRKQKTLCDVILMVQER K L L M R K 1 1 2 0 0 0 0 2 0 0 2 0 3 1 0 0 0 0 0 1 0 0 13 0 1452.704 Q8IXQ5 Q8IXQ5 26 38 KLHL7 Kelch-like protein 7 yes yes 2 0.003314 105.1 By MS/MS 3 0 1 1 1920200 0 0 1920200 8184 1586 8522 35021 29395 29395 1 0 0 372430 LLAHEIFEK KYFSAKSGVYCGPLKLLAHEIFEKSNAAGV YCGPLKLLAHEIFEKSNAAGVPCDLVTGEE K L L E K S 1 0 0 0 0 0 2 0 1 1 2 1 0 1 0 0 0 0 0 0 0 0 9 0 1098.6073 Q8IYB8 Q8IYB8 235 243 SUPV3L1 ATP-dependent RNA helicase SUPV3L1, mitochondrial yes yes 2 0.052634 70.747 By MS/MS 3 0 1 1 5551600 0 0 5551600 8185 1592 8523 35022 29396 29396 1 0 0 1076800 LLALNSLYSPK FWSHETRLPSNTLDRLLALNSLYSPKIEVH TLDRLLALNSLYSPKIEVHFLSLATNFLLE R L L P K I 1 0 1 0 0 0 0 0 0 0 4 1 0 0 1 2 0 0 1 0 0 0 11 0 1217.702 P78527 P78527 2539 2549 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 6.7628E-10 171.36 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 39041000 1959100 8089700 28992000 8186 1089 8524 35023;35024;35025 29397;29398;29399 29399 3 1959100 3954200 6246800 LLALSGPGGGR LTGRDPNDVRPIQARLLALSGPGGGRGRGS IQARLLALSGPGGGRGRGSLLLRRGFSDSG R L L G R G 1 1 0 0 0 0 0 4 0 0 3 0 0 0 1 1 0 0 0 0 0 0 11 0 996.57163 Q9H307 Q9H307 44 54 PNN Pinin yes yes 2 0.00052632 119.21 By MS/MS By MS/MS 7 3.56 1 1 1 2 1 20652000 0 4503100 16149000 8187 1978 8525 35026;35027;35028 29400;29401 29401 2 0 14367000 3649300 LLAQDQGQGAPLLEPAP GYTPVCRALHSLLLRLLAQDQGQGAPLLEP AQDQGQGAPLLEPAP_______________ R L L A P - 3 0 0 1 0 3 1 2 0 0 4 0 0 0 3 0 0 0 0 0 0 0 17 0 1716.9046 Q15102 Q15102 215 231 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 2 1.9029E-05 108.98 By MS/MS By matching 7 0 2 1 1 7906600 3585500 0 4321200 8188 1345 8526 35029;35030 29402 29402 1 7727400 0 766760 LLAQQLVSPVK NVHAHRYRHPGHIHKLLAQQLVSPVKWEQT HIHKLLAQQLVSPVKWEQTMHAIYERKKGR K L L V K W 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 11 0 1194.7336 Q8IVS2 Q8IVS2 315 325 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 2 0.0018146 109.44 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 14017000 0 3282200 10735000 8189 1571 8527 35031;35032 29403;29404 29404 2 0 1136200 1497300 LLASANLEEVTMK KKPPTDEELKETIKKLLASANLEEVTMKQI KKLLASANLEEVTMKQICKKVYENYPTYDL K L L M K Q 2 0 1 0 0 0 2 0 0 0 3 1 1 0 0 1 1 0 0 1 0 0 13 0 1417.7487 P35659 P35659 332 344 DEK Protein DEK yes yes 2 3.1328E-07 166.55 By MS/MS By MS/MS 5.44 2.26 1 2 3 4 2 1 1 2 5 11 864370000 0 132530000 731840000 8190 758 8528;8529 35033;35034;35035;35036;35037;35038;35039;35040;35041;35042;35043;35044;35045;35046;35047;35048 29405;29406;29407;29408;29409;29410;29411;29412;29413;29414;29415;29416;29417;29418 29406 375 14 0 59200000 133760000 LLASFFDR CHVSAGTRHKVLLRRLLASFFDRNTLANSC HKVLLRRLLASFFDRNTLANSCGTGIRSST R L L D R N 1 1 0 1 0 0 0 0 0 0 2 0 0 2 0 1 0 0 0 0 0 0 8 0 967.51272 Q96RE7 Q96RE7 402 409 NACC1 Nucleus accumbens-associated protein 1 yes yes 2 0.00018411 140.98 By MS/MS 6.5 0.5 1 1 2 8784500 0 0 8784500 8191 1829 8530 35049;35050 29419;29420 29420 2 0 0 1454600 LLASINSTVR EVKGAVYSMVEFNGKLLASINSTVRLYEWT EFNGKLLASINSTVRLYEWTTEKELRTECN K L L V R L 1 1 1 0 0 0 0 0 0 1 2 0 0 0 0 2 1 0 0 1 0 0 10 0 1072.6241 Q16531 Q16531 880 889 DDB1 DNA damage-binding protein 1 yes yes 2 5.094E-05 149.82 By MS/MS 2 0 1 1 18330000 0 18330000 0 8192 1387 8531 35051 29421 29421 1 0 8254300 0 LLASLYR ASMLWLLQQEMVTWRLLASLYRDRIQSALE QQEMVTWRLLASLYRDRIQSALEEESVFAV R L L Y R D 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 7 0 834.49634 P57740 P57740 221 227 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.0091427 122.15 By MS/MS 2 0 1 1 6057300 0 0 6057300 8193 956 8532 35052 29422 29422 1 0 0 1368800 LLASQGSQGAPLLSTPK SMDPAMLERLLSLDRLLASQGSQGAPLLST ASQGSQGAPLLSTPKRERMVLMKTVEEKDL R L L P K R 2 0 0 0 0 2 0 2 0 0 4 1 0 0 2 3 1 0 0 0 0 0 17 0 1666.9254 Q14807 Q14807 449 465 KIF22 Kinesin-like protein KIF22 yes yes 2 1.9822E-06 154.47 By matching By MS/MS By matching 3.33 0.471 2 1 1 1 1 20291000 3836300 11003000 5451600 8194 1320 8533 35053;35054;35055 29423 29423 1 4426200 4690500 890420 LLASTLVHSVK PLDDSNRPASLTKDRLLASTLVHSVKKEQE TKDRLLASTLVHSVKKEQEFRSIFDHIKLP R L L V K K 1 0 0 0 0 0 0 0 1 0 3 1 0 0 0 2 1 0 0 2 0 0 11 0 1166.7023 Q9NYF8 Q9NYF8 570 580 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.001268 111.61 By MS/MS By MS/MS By MS/MS 3.45 2.31 2 3 2 1 1 1 1 1 5 5 279050000 9062000 36052000 233940000 8195 2097 8534 35056;35057;35058;35059;35060;35061;35062;35063;35064;35065;35066 29424;29425;29426;29427;29428;29429;29430;29431;29432 29432 9 10919000 15839000 50467000 LLASTLVHSVKK PLDDSNRPASLTKDRLLASTLVHSVKKEQE KDRLLASTLVHSVKKEQEFRSIFDHIKLPQ R L L K K E 1 0 0 0 0 0 0 0 1 0 3 2 0 0 0 2 1 0 0 2 0 0 12 1 1294.7973 Q9NYF8 Q9NYF8 570 581 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.01588 64.65 By MS/MS 2 0 1 1 8061700 0 8061700 0 8196 2097 8535 35067 29433 29433 1 0 3630300 0 LLATEQEDAAVAK DPVAILKRQLEEKEKLLATEQEDAAVAKSK EKLLATEQEDAAVAKSKLRELNKEMAAEKA K L L A K S 4 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1357.7089 Q9P2E9 Q9P2E9 708 720 RRBP1 Ribosome-binding protein 1 yes yes 2 0.0070447 94.692 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 57743000 0 0 57743000 8197 2122 8536 35068;35069 29434;29435 29435 2 0 0 12442000 LLATGSQDR HDKDINSVAIAPNDKLLATGSQDRTAKLWA IAPNDKLLATGSQDRTAKLWALPQCQLLGV K L L D R T 1 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 959.50361 Q12788 Q12788 493 501 TBL3 Transducin beta-like protein 3 yes yes 2 0.033069 78.334 By MS/MS 3 0 1 1 0 0 0 0 8198 1197 8537 35070 29436 29436 1 0 0 0 LLDAPGIVPGPNSEVGTILR ITKFMQEVYLDKFIRLLDAPGIVPGPNSEV GIVPGPNSEVGTILRNCVHVQKLADPVTPV R L L L R N 1 1 1 1 0 0 1 3 0 2 3 0 0 0 3 1 1 0 0 2 0 0 20 0 2017.1208 Q9NVN8 Q9NVN8 301 320 GNL3L Guanine nucleotide-binding protein-like 3-like protein yes yes 2 0.0044988 64.244 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 7724800 0 3608800 4116000 8199 2068 8538 35071;35072;35073 29437;29438 29438 2 0 1384600 798320 LLDAQLATGGIVDPR QAMKKELIPTEEALRLLDAQLATGGIVDPR LLDAQLATGGIVDPRLGFHLPLEVAYQRGY R L L P R L 2 1 0 2 0 1 0 2 0 1 3 0 0 0 1 0 1 0 0 1 0 0 15 0 1537.8464 Q15149 Q15149 3936 3950 PLEC Plectin yes yes 2 0.00030623 148.18 By matching By MS/MS 1.33 0.471 2 1 1 2 25313000 5841900 19471000 0 8200 1348 8539 35074;35075;35076 29439;29440 29439 2 5841900 9336000 0 LLDAQLSTGGIVDPSK QALKKGLIPREQGLRLLDAQLSTGGIVDPS LDAQLSTGGIVDPSKSHRVPLDVACARGCL R L L S K S 1 0 0 2 0 1 0 2 0 1 3 1 0 0 1 2 1 0 0 1 0 0 16 0 1612.8672 Q15149 Q15149 3270 3285 PLEC Plectin yes yes 2 2.2063E-35 206.69 By MS/MS 1 0 1 1 17124000 0 17124000 0 8201 1348 8540 35077 29441 29441 1 0 8370100 0 LLDAVDTYIPVPAR LEGRDPELGLKSVQKLLDAVDTYIPVPARD KLLDAVDTYIPVPARDLEKPFLLPVEAVYS K L L A R D 2 1 0 2 0 0 0 0 0 1 2 0 0 0 2 0 1 0 1 2 0 0 14 0 1541.8453 P49411 P49411 239 252 TUFM Elongation factor Tu, mitochondrial yes yes 2 0.00037974 129.7 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 26882000 0 9196600 17686000 8202 856 8541 35078;35079;35080 29442;29443;29444 29442 3 0 2370600 2553600 LLDDLFR KSEKKEKAQEEPPAKLLDDLFRKTKAAPCI AQEEPPAKLLDDLFRKTKAAPCIYWLPLTD K L L F R K 0 1 0 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 7 0 890.48617 Q9UKV3 Q9UKV3 1210 1216 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 7.653E-12 178.02 By matching By MS/MS 3 1.29 1 1 2 1 1 1 5 27503000 1230700 0 26272000 8203 2184 8542 35081;35082;35083;35084;35085;35086 29445;29446;29447;29448;29449 29446 5 1420000 0 5211700 LLDDVSFHPCIRFK LSGMPDLSLSFMNPRLLDDVSFHPCIRFKR RLLDDVSFHPCIRFKRWESERVLSFIPPDG R L L F K R 0 1 0 2 1 0 0 0 1 1 2 1 0 2 1 1 0 0 0 1 0 0 14 1 1745.8923 Q9Y2T2 Q9Y2T2 227 240 AP3M1 AP-3 complex subunit mu-1 yes yes 3 0.032895 51.875 By matching By MS/MS 6 0 2 1 1 12188000 0 906550 11282000 8204 2250 8543 35087;35088 29450 29450 1 0 313820 1687900 LLDEQEQEDEEASTGSHLK LELEGGDEAEDLTKKLLDEQEQEDEEASTG QEQEDEEASTGSHLKLIVDAFLQQLPNCVN K L L L K L 1 0 0 2 0 2 5 1 1 0 3 1 0 0 0 2 1 0 0 0 0 0 19 0 2156.971 Q9HAU5 Q9HAU5 547 565 UPF2 Regulator of nonsense transcripts 2 yes yes 3 1.1629E-09 128.1 By MS/MS 1.5 0.5 1 1 2 11091000 0 0 11091000 8205 2003 8544 35089;35090 29451 29451 1 0 0 2451400 LLDFGSLSNLQVTQPTVGMNFK QEIIEVDPDTKEMLKLLDFGSLSNLQVTQP SNLQVTQPTVGMNFKTPRGPV_________ K L L F K T 0 0 2 1 0 2 0 2 0 0 4 1 1 2 1 2 2 0 0 2 0 0 22 0 2408.241 P08708 P08708 108 129 RPS17 40S ribosomal protein S17 yes yes 2;3 1.407E-110 259.27 By MS/MS By MS/MS 7.45 0.782 2 2 7 8 3 354700000 0 97243000 257460000 8206 477 8545;8546 35091;35092;35093;35094;35095;35096;35097;35098;35099;35100;35101 29452;29453;29454;29455;29456;29457;29458 29458 192 7 0 43596000 39470000 LLDHMQNTPGFMYK KLGNGINIIVATPGRLLDHMQNTPGFMYKN RLLDHMQNTPGFMYKNLQCLVIDEADRILD R L L Y K N 0 0 1 1 0 1 0 1 1 0 2 1 2 1 1 0 1 0 1 0 0 0 14 0 1693.7956 Q9NVP1 Q9NVP1 312 325 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3 1.2249E-24 197.3 By MS/MS By MS/MS 2.83 0.687 2 3 1 2 4 149580000 0 44811000 104770000 8207 2069 8547 35102;35103;35104;35105;35106;35107 29459;29460;29461 29461 3 0 19194000 20317000 LLDIEGLYSK QADAINAFGESLQKKLLDIEGLYSKVRSRY SLQKKLLDIEGLYSKVRSRYSFIQALVRRI K L L S K V 0 0 0 1 0 0 1 1 0 1 3 1 0 0 0 1 0 0 1 0 0 0 10 0 1149.6281 Q92621 Q92621 1979 1988 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.020459 82.749 By MS/MS 1 0 1 1 8760200 0 0 8760200 8208 1714 8548 35108 29462 29462 1 0 0 1887500 LLDLVQQSCNYK NPKAYPLADAHLTKKLLDLVQQSCNYKQLR TKKLLDLVQQSCNYKQLRKGANEATKTLNR K L L Y K Q 0 0 1 1 1 2 0 0 0 0 3 1 0 0 0 1 0 0 1 1 0 0 12 0 1479.7392 P55769 P55769 22 33 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 2 9.7643E-26 204.07 By MS/MS 9 0 1 1 7777000 7777000 0 0 8209 943 8549 35109 29463 29463 1 4365300 0 0 LLDNWDSVTSTFSK SQFEGSALGKQLNLKLLDNWDSVTSTFSKL KLLDNWDSVTSTFSKLREQLGPVTQEFWDN K L L S K L 0 0 1 2 0 0 0 0 0 0 2 1 0 1 0 3 2 1 0 1 0 0 14 0 1611.7781 P02647 P02647 70 83 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 2.5872E-34 213.16 By MS/MS By matching 4.86 3.18 1 1 1 1 1 1 1 6 1 161140000 154660000 0 6479200 8210 389 8550 35110;35111;35112;35113;35114;35115;35116 29464;29465;29466;29467;29468 29467 5 106900000 0 903730 LLDNWDTLASTLSK AQFEASALGKQLNLKLLDNWDTLASTLSKV KLLDNWDTLASTLSKVREQLGPVTQEFWDN K L L S K V 1 0 1 2 0 0 0 0 0 0 4 1 0 0 0 2 2 1 0 0 0 0 14 0 1575.8144 CON__P15497 CON__P15497 69 82 yes yes 2 2.021E-11 179.6 By MS/MS By MS/MS By MS/MS 6.56 2.56 1 1 2 3 2 2 5 4 3 4 11 4 12 1518200000 163800000 46881000 1307500000 + 8211 59 8551 35117;35118;35119;35120;35121;35122;35123;35124;35125;35126;35127;35128;35129;35130;35131;35132;35133;35134;35135;35136;35137;35138;35139;35140;35141;35142;35143 29469;29470;29471;29472;29473;29474;29475;29476;29477;29478;29479;29480;29481;29482;29483;29484;29485;29486;29487;29488;29489;29490;29491;29492;29493 29475 25 206990000 70518000 279590000 LLDNWDTLASTLSKVR AQFEASALGKQLNLKLLDNWDTLASTLSKV LDNWDTLASTLSKVREQLGPVTQEFWDNLE K L L V R E 1 1 1 2 0 0 0 0 0 0 4 1 0 0 0 2 2 1 0 1 0 0 16 1 1830.984 CON__P15497 CON__P15497 69 84 yes yes 3 0.0032253 67.605 By MS/MS 7 0 1 1 3899200 0 0 3899200 + 8212 59 8552 35144 29494 29494 1 0 0 691880 LLDPEDISVDHPDEK QNAFNLAEQHLGLTKLLDPEDISVDHPDEK LLDPEDISVDHPDEKSIITYVVTYYHYFSK K L L E K S 0 0 0 4 0 0 2 0 1 1 2 1 0 0 2 1 0 0 0 1 0 0 15 0 1720.8156 Q01082 Q01082 250 264 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.0011757 80.632 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 40452000 0 5993600 34458000 8213 1128 8553 35145;35146;35147 29495;29496 29496 2 0 2929600 7456900 LLDPEDVDVPQPDEK DQAFSVAERDLGVTRLLDPEDVDVPQPDEK LLDPEDVDVPQPDEKSIITYVSSLYDAMPR R L L E K S 0 0 0 4 0 1 2 0 0 0 2 1 0 0 3 0 0 0 0 2 0 0 15 0 1707.8203 Q15149 Q15149 372 386 PLEC Plectin yes yes 2 0.00038987 116.03 By matching By MS/MS By MS/MS 1 0 3 1 1 1 15625000 2913500 1994300 10717000 8214 1348 8554 35148;35149;35150 29497;29498 29498 2 2913500 974770 2309100 LLDSITVPVAR MQPAQHGEIIKHMAKLLDSITVPVARASIL HMAKLLDSITVPVARASILWLIGENCERVP K L L A R A 1 1 0 1 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 2 0 0 11 0 1182.6972 O00203 O00203 486 496 AP3B1 AP-3 complex subunit beta-1 yes yes 2 1.0903E-06 115.71 By MS/MS 3 0 1 1 0 0 0 0 8215 111 8555 35151 29499 29499 1 0 0 0 LLDSSTVTHLFK KDCAVIVTQKKVPDKLLDSSTVTHLFKITE PDKLLDSSTVTHLFKITENIGCVMTGMTAD K L L F K I 0 0 0 1 0 0 0 0 1 0 3 1 0 1 0 2 2 0 0 1 0 0 12 0 1359.7398 P60900 P60900 60 71 PSMA6 Proteasome subunit alpha type-6 yes yes 3 0.015629 65.563 By MS/MS By matching 8 1.41 2 1 1 2 10428000 0 1978500 8449400 8216 969 8556 35152;35153;35154 29500 29500 1 0 1136100 2963900 LLDSVPPTAISHFK SATEIIKASSKDAIRLLDSVPPTAISHFKQ RLLDSVPPTAISHFKQSAEKLIEEKGAVEA R L L F K Q 1 0 0 1 0 0 0 0 1 1 2 1 0 1 2 2 1 0 0 1 0 0 14 0 1523.8348 Q9NR30 Q9NR30 582 595 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.00041655 124.42 By matching By MS/MS By MS/MS 2.71 0.7 3 3 1 1 5 1 62151000 3102200 44112000 14936000 8217 2038 8557 35155;35156;35157;35158;35159;35160;35161 29501;29502;29503;29504;29505;29506 29506 6 3737800 19408000 2896900 LLDTIGISQPQWR PEAIDSAENRFKFSRLLDTIGISQPQWREL SRLLDTIGISQPQWRELSDLESARQFCQTV R L L W R E 0 1 0 1 0 2 0 1 0 2 2 0 0 0 1 1 1 1 0 0 0 0 13 0 1525.8253 P27708 P27708 1054 1066 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 8.5606E-34 208.63 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 31496000 0 21386000 10110000 8218 681 8558 35162;35163;35164 29507;29508 29507 2 0 10453000 2207000 LLDTNPEINQSDSQDSR LFYVTAFDRDRAMQRLLDTNPEINQSDSQD DTNPEINQSDSQDSRVAPRLDRKKRTVNRE R L L S R V 0 1 2 3 0 2 1 0 0 1 2 0 0 0 1 3 1 0 0 0 0 0 17 0 1930.8868 Q14669 Q14669 1565 1581 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 8.4197E-06 123.02 By MS/MS 1 0 1 1 4546500 0 0 4546500 8219 1308 8559 35165 29509 29509 1 0 0 979610 LLDYTEKPLYENLR KNKPGEIAKYMETVKLLDYTEKPLYENLRD KLLDYTEKPLYENLRDILLQGLKAIGSKDD K L L L R D 0 1 1 1 0 0 2 0 0 0 4 1 0 0 1 0 1 0 2 0 0 0 14 1 1765.9251 Q99986 Q99986 308 321 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2;3 1.4634E-06 170.52 By MS/MS By MS/MS 4.5 0.866 1 3 3 1 2 6 177460000 0 7589300 169870000 8220 1871 8560 35166;35167;35168;35169;35170;35171;35172;35173 29510;29511;29512;29513;29514 29514 5 0 2005300 24613000 LLEAASVSSK DAINRSMVEDITGLRLLEAASVSSKGLPSP ITGLRLLEAASVSSKGLPSPYNMSSAPGSR R L L S K G 2 0 0 0 0 0 1 0 0 0 2 1 0 0 0 3 0 0 0 1 0 0 10 0 1003.555 P15924 P15924 2802 2811 DSP Desmoplakin yes yes 2 0.070532 61.65 By MS/MS 1 0 1 1 14100000 0 14100000 0 8221 572 8561 35174 29515 29515 0 0 6891700 0 LLEAFHNQGPVIK KKHQRTLMPEKLSHKLLEAFHNQGPVIKRK HKLLEAFHNQGPVIKRKHDLHKMAEANRAL K L L I K R 1 0 1 0 0 1 1 1 1 1 2 1 0 1 1 0 0 0 0 1 0 0 13 0 1464.8089 Q9Y2R9 Q9Y2R9 209 221 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 2;3 0.00026354 146.11 By MS/MS By matching 7 0 3 2 1 36137000 0 11257000 24880000 8222 2248 8562 35175;35176;35177 29516;29517 29517 2 0 6463600 4414800 LLEAISSLDGK SEDEGDNDGERKHQKLLEAISSLDGKNRRK KHQKLLEAISSLDGKNRRKLAERSEASLKV K L L G K N 1 0 0 1 0 0 1 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 11 0 1144.634 Q9BVJ6 Q9BVJ6 46 56 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.00078902 116.52 By MS/MS 2 0 1 1 8165200 0 0 8165200 8223 1915 8563 35178 29518 29518 1 0 0 1845200 LLEAQIASGGVVDPVNSVFLPK EAIKKNLIDRETGMRLLEAQIASGGVVDPV SGGVVDPVNSVFLPKDVALARGLIDRDLYR R L L P K D 2 0 1 1 0 1 1 2 0 1 3 1 0 1 2 2 0 0 0 4 0 0 22 0 2252.2416 P15924 P15924 2124 2145 DSP Desmoplakin yes yes 2;3 6.6999E-19 125.89 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 42014000 0 15087000 26927000 8224 572 8564 35179;35180;35181;35182;35183 29519;29520;29521;29522 29519 4 0 7337800 5801800 LLEAQIATGGIIDPK QAMNKELIEKGHGIRLLEAQIATGGIIDPK LLEAQIATGGIIDPKESHRLPVDIAYKRGY R L L P K E 2 0 0 1 0 1 1 2 0 3 2 1 0 0 1 0 1 0 0 0 0 0 15 0 1537.8716 P15924 P15924 2367 2381 DSP Desmoplakin yes yes 2 2.9838E-07 165.58 By MS/MS By MS/MS By MS/MS 5 3.13 3 1 1 1 1 1 1 1 1 9 1 1 80725000 58301000 7393000 15031000 8225 572 8565 35184;35185;35186;35187;35188;35189;35190;35191;35192;35193;35194 29523;29524;29525;29526;29527;29528;29529;29530 29527 8 55606000 3613600 3238700 LLEAQIATGGIIDPVHSHR QAMQKGLVLRQHGIRLLEAQIATGGIIDPV QIATGGIIDPVHSHRVPVDVAYQRGYFSEE R L L H R V 2 1 0 1 0 1 1 2 2 3 2 0 0 0 1 1 1 0 0 1 0 0 19 0 2026.096 P58107;Q15149 Q15149 3601 3619 EPPK1;PLEC Epiplakin;Plectin no no 4 0.015806 42.711 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 16018000 1275300 10339000 4403900 8226 1348;958 8566 35195;35196;35197 29531 29531 1 1275300 5053500 995200 LLEAQIATGGVIDPVHSHR QAMQKGLIVREHGIRLLEAQIATGGVIDPV QIATGGVIDPVHSHRVPVDVAYRRGYFDEE R L L H R V 2 1 0 1 0 1 1 2 2 2 2 0 0 0 1 1 1 0 0 2 0 0 19 0 2012.0803 P58107;Q15149 Q15149 2942 2960 EPPK1;PLEC Epiplakin;Plectin no no 2;3;4 7.3766E-17 178.68 By MS/MS By MS/MS 2.36 1.37 4 3 1 2 1 4 7 216370000 0 86600000 129770000 8227 1348;958 8567 35198;35199;35200;35201;35202;35203;35204;35205;35206;35207;35208 29532;29533;29534;29535;29536;29537 29536 5 0 41404000 27660000 LLEAQSHFR RWSQLLANSAARKKKLLEAQSHFRKVEDLF AARKKKLLEAQSHFRKVEDLFLTFAKKASA K L L F R K 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 9 0 1099.5774 Q13813 Q13813 2079 2087 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00046714 123.98 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 32676000 0 7563600 25112000 8228 1268 8568 35209;35210;35211 29538;29539 29539 2 0 3697000 5436400 LLEAQVASGFLVDPLNNQR QAVRDGLLPTGLGQRLLEAQVASGFLVDPL QVASGFLVDPLNNQRLSVEDAVKVGLVGRE R L L Q R L 2 1 2 1 0 2 1 1 0 0 4 0 0 1 1 1 0 0 0 2 0 0 19 0 2083.1062 P58107 P58107 1279 1297 EPPK1 Epiplakin yes yes 2;3 1.1956E-09 154.47 By MS/MS 1.33 0.471 2 1 3 5689100 0 5689100 0 8229 958 8569 35212;35213;35214 29540;29541 29541 2 0 2741700 0 LLEATELK EVAARMNEVISLWKKLLEATELKGIKLREA VISLWKKLLEATELKGIKLREANQQQQFNR K L L L K G 1 0 0 0 0 0 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 8 0 915.5277 Q13813 Q13813 663 670 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.025235 80.229 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 56519000 0 24684000 31834000 8230 1268 8570 35215;35216;35217;35218 29542;29543 29542 2 0 12065000 6830300 LLEDFLQEGEEPDEDDAYQVLSTLK SRSQLIDELADKFNRLLEDFLQEGEEPDED EPDEDDAYQVLSTLKRITAFHNAHDLSKWD R L L L K R 1 0 0 4 0 2 5 1 0 0 5 1 0 1 1 1 1 0 1 1 0 0 25 0 2895.3549 Q8N3U4 Q8N3U4 668 692 STAG2 Cohesin subunit SA-2 yes yes 2;3 1.6896E-86 228.9 By MS/MS 1.67 0.471 1 2 3 23839000 0 0 23839000 8231 1603 8571 35219;35220;35221 29544;29545 29545 2 0 0 5344900 LLEDGEDFNLGDALDSSNSMQTIQK NIKVKLEAEIATYRRLLEDGEDFNLGDALD GDALDSSNSMQTIQKTTTRRIVDGKVVSET R L L Q K T 1 0 2 4 0 2 2 2 0 1 4 1 1 1 0 3 1 0 0 0 0 0 25 0 2739.2545 P05783 P05783 383 407 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 1.53E-28 134.47 By MS/MS By MS/MS 3.5 1.26 2 1 1 2 2 4 147700000 0 22994000 124700000 8232 436 8572;8573 35222;35223;35224;35225;35226;35227 29546;29547;29548;29549 29549 157 4 0 6422000 20653000 LLEDMVEK LAALLLHCYADSGCKLLEDMVEKTINSDIS YADSGCKLLEDMVEKTINSDISIPEYKELL K L L E K T 0 0 0 1 0 0 2 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 8 0 975.49468 O75556 O75556 24 31 SCGB2A1 Mammaglobin-B yes yes 2 0.018852 85.212 By MS/MS 4 1.41 1 1 1 1 1 5 36012000 36012000 0 0 8233 272 8574 35228;35229;35230;35231;35232 29550;29551;29552 29551 3 32477000 0 0 LLEEALLR SAGCLASLQQPVGIRLLEEALLRLLPAELP QQPVGIRLLEEALLRLLPAELPAKRVRGKA R L L L R L 1 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 955.57023 P78527 P78527 2892 2899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0088981 102.71 By MS/MS 1 0 1 1 0 0 0 0 8234 1089 8575 35233 29553 29553 1 0 0 0 LLEEAQLQDLEK KKIFNSDELIHFRLRLLEEAQLQDLEKALV RLRLLEEAQLQDLEKALVLANPEVSLWRKQ R L L E K A 1 0 0 1 0 2 3 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 12 0 1427.7508 Q9NU22 Q9NU22 222 233 MDN1 Midasin yes yes 2 0.0016999 110.53 By MS/MS By MS/MS 1 0 2 1 1 10804000 0 4298900 6505400 8235 2056 8576 35234;35235 29554;29555 29554 2 0 2101200 1401700 LLEEEDSK KRRLDQLERKKETQRLLEEEDSKLKGGKAP RKKETQRLLEEEDSKLKGGKAPRVATSSKV R L L S K L 0 0 0 1 0 0 3 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 0 961.46041 Q96CT7 Q96CT7 73 80 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 0.013648 89.296 By MS/MS 6 0 1 1 16320000 0 0 16320000 8236 1761 8577 35236 29556 29556 1 0 0 2441600 LLEEEIQAPTSSK YRIDPNVLLDPADEKLLEEEIQAPTSSKRS EKLLEEEIQAPTSSKRSQQHAKVVPWMRKT K L L S K R 1 0 0 0 0 1 3 0 0 1 2 1 0 0 1 2 1 0 0 0 0 0 13 0 1443.7457 Q8N7H5 Q8N7H5 107 119 PAF1 RNA polymerase II-associated factor 1 homolog yes yes 2 0.00085146 116.55 By MS/MS 3 0 1 1 8228600 0 0 8228600 8237 1614 8578 35237 29557 29557 1 0 0 1596000 LLEELEEGQK ______________________________ PRNFRLLEELEEGQKGVGDGTVSWGLEDDE R L L Q K G 0 0 0 0 0 1 4 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 0 1186.6081 Q15819;Q13404 Q15819 15 24 UBE2V2;UBE2V1 Ubiquitin-conjugating enzyme E2 variant 2;Ubiquitin-conjugating enzyme E2 variant 1 yes no 2 0.0014824 108.98 By MS/MS 8 0 1 1 4662500 0 0 4662500 8238 1242 8579 35238 29558 29558 1 0 0 714800 LLEENVSAFK EANVLATAPDKKKQKLLEENVSAFKTEYDA KKKQKLLEENVSAFKTEYDAVAEKAGKVEA K L L F K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1148.6077 Q9NTJ3 Q9NTJ3 858 867 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.012419 87.308 By MS/MS 2 0 1 1 6611100 0 6611100 0 8239 2054 8580 35239 29559 29559 1 0 2977100 0 LLEEQLQHEISNK EKMQQSVYVKDDKIRLLEEQLQHEISNKME IRLLEEQLQHEISNKMEEFKILNDQNKALK R L L N K M 0 0 1 0 0 2 3 0 1 1 3 1 0 0 0 1 0 0 0 0 0 0 13 0 1579.8206 Q86UP2 Q86UP2 684 696 KTN1 Kinectin yes yes 2 1.4585E-24 198.45 By MS/MS 2 0 1 1 12341000 0 0 12341000 8240 1549 8581 35240 29560 29560 1 0 0 2788900 LLEGEDAHLSSQQASGQSYSSR DVKTRLEQEIATYRRLLEGEDAHLSSQQAS HLSSQQASGQSYSSREVFTSSSSSSSRQTR R L L S R E 2 1 0 1 0 3 2 2 1 0 3 0 0 0 0 6 0 0 1 0 0 0 22 0 2349.0833 CON__P08779;P08779 CON__P08779 420 441 KRT16 Keratin, type I cytoskeletal 16 yes no 3 1.9869E-53 210.29 By MS/MS By MS/MS 4.9 3.11 2 1 1 2 2 2 5 5 218300000 174930000 0 43374000 + 8241 53 8582 35241;35242;35243;35244;35245;35246;35247;35248;35249;35250 29561;29562;29563;29564;29565;29566;29567;29568;29569 29563 9 142770000 0 8059700 LLEGEDAHLSSSQFSSGSQSSR DVKTRLEQEIATYRRLLEGEDAHLSSSQFS HLSSSQFSSGSQSSRDVTSSSRQIRTKVMD R L L S R D 1 1 0 1 0 2 2 2 1 0 3 0 0 1 0 8 0 0 0 0 0 0 22 0 2308.0567 CON__P02533;P02533;CON__Q61782 CON__P02533 418 439 KRT14 Keratin, type I cytoskeletal 14 yes no 2;3 0 432.39 By MS/MS By MS/MS By MS/MS 5.31 3 4 2 3 4 5 2 2 4 3 14 4 11 919420000 638020000 24710000 256700000 + 8242 35 8583 35251;35252;35253;35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267;35268;35269;35270;35271;35272;35273;35274;35275;35276;35277;35278;35279 29570;29571;29572;29573;29574;29575;29576;29577;29578;29579;29580;29581;29582;29583;29584;29585;29586;29587;29588;29589;29590;29591;29592;29593;29594 29574 25 556360000 17651000 68771000 LLEGEDAHLTQYK DVKTRLEQEIATYRRLLEGEDAHLTQYKKE RRLLEGEDAHLTQYKKEPVTTRQVRTIVEE R L L Y K K 1 0 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 1 0 0 0 13 0 1515.7569 Q04695;CON__Q04695 Q04695 387 399 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 0.00034265 127.87 By MS/MS By MS/MS 5.25 2.28 1 1 1 1 3 1 61872000 41502000 20370000 0 + 8243 73 8584 35280;35281;35282;35283 29595;29596;29597 29597 3 29890000 5250700 0 LLEGEDAHLTQYKK DVKTRLEQEIATYRRLLEGEDAHLTQYKKE RLLEGEDAHLTQYKKEPVTTRQVRTIVEEV R L L K K E 1 0 0 1 0 1 2 1 1 0 3 2 0 0 0 0 1 0 1 0 0 0 14 1 1643.8519 Q04695;CON__Q04695 Q04695 387 400 KRT17 Keratin, type I cytoskeletal 17 yes no 2;3;4 7.0945E-17 187.85 By MS/MS By MS/MS 4.22 1.03 1 1 2 5 4 5 141790000 0 41811000 99984000 + 8244 73 8585 35284;35285;35286;35287;35288;35289;35290;35291;35292 29598;29599;29600;29601;29602 29602 5 0 11425000 14173000 LLEGEECR NVKLALDVEIATYRKLLEGEECRMSGDLSS EIATYRKLLEGEECRMSGDLSSNVTVSVTS K L L C R M 0 1 0 0 1 0 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1004.4597 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4;P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5;CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7 CON__P35908 489 496 KRT78;KRT6A;KRT5;KRT6C;KRT76;KRT2;KRT73;KRT74 Keratin, type II cytoskeletal 78;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74 no no 2 0.00047622 129.4 By MS/MS By matching By MS/MS 6.06 2.56 1 1 3 3 1 2 1 2 2 8 2 6 107750000 49747000 5569300 52429000 + 8245 65;66;68;37;47;58;69;71;1135;86;94;80 8586 35293;35294;35295;35296;35297;35298;35299;35300;35301;35302;35303;35304;35305;35306;35307;35308 29603;29604;29605;29606;29607;29608;29609;29610;29611;29612;29613;29614;29615;29616 29603 13 46485000 1558000 13629000 LLEGEEER DVKLALDMEISAYRKLLEGEEERLKLSPSP EISAYRKLLEGEEERLKLSPSPSSRVTVSR K L L E R L 0 1 0 0 0 0 4 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 0 973.47164 P02545;P20700;Q03252 P20700 380 387 LMNA;LMNB1;LMNB2 Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2 no no 2 7.9973E-06 154.35 By MS/MS By MS/MS By MS/MS 4 1.05 4 2 2 1 1 3 5 898260000 10109000 60178000 827980000 8246 619;387;1156 8587 35309;35310;35311;35312;35313;35314;35315;35316;35317 29617;29618;29619;29620;29621;29622;29623;29624 29622 8 11664000 24680000 151480000 LLEGEEERLK DVKLALDMEISAYRKLLEGEEERLKLSPSP SAYRKLLEGEEERLKLSPSPSSRVTVSRAS K L L L K L 0 1 0 0 0 0 4 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 10 1 1214.6507 P20700;Q03252 P20700 380 389 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 3 0.034073 63.32 By MS/MS 2.5 0.5 1 1 2 0 0 0 0 8247 619;1156 8588 35318;35319 29625;29626 29625 2 0 0 0 LLEGEESR NVKMALDIEIATYRKLLEGEESRISLPLPN EIATYRKLLEGEESRISLPLPNFSSLNLRE K L L S R I 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 931.46108 CON__P05787;P05787;CON__Q9H552;CON__Q9DCV7;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;P08670;P41219;P17661 P08670 403 410 KRT8;KRT84;VIM;PRPH;DES Keratin, type II cytoskeletal 8;Keratin, type II cuticular Hb4;Vimentin;Peripherin;Desmin no no 2 7.0318E-06 155.51 By MS/MS By MS/MS By MS/MS 5.33 2.3 1 2 4 3 1 2 1 1 3 5 7 704440000 14699000 154230000 535520000 + 8248 476;49;92 8589 35320;35321;35322;35323;35324;35325;35326;35327;35328;35329;35330;35331;35332;35333;35334 29627;29628;29629;29630;29631;29632;29633;29634;29635;29636;29637;29638 29632 12 11547000 47498000 93489000 LLEGIGLENLDSPAATK VAQALKADLVPYLLKLLEGIGLENLDSPAA EGIGLENLDSPAATKAQIVKALKAMTRSLQ K L L T K A 2 0 1 1 0 0 2 2 0 1 4 1 0 0 1 1 1 0 0 0 0 0 17 0 1739.9305 O75165 O75165 2140 2156 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.0026247 83.769 By MS/MS 1 0 1 1 2429000 0 2429000 0 8249 245 8590 35335 29639 29639 1 0 1187300 0 LLEISAEDAER KKECAARGEDYEKVKLLEISAEDAERWERK EKVKLLEISAEDAERWERKKKRKNPDLGFS K L L E R W 2 1 0 1 0 0 3 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1244.6248 O95926 O95926 100 110 SYF2 Pre-mRNA-splicing factor SYF2 yes yes 2 0.00048051 119.68 By MS/MS 6 0 1 1 10104000 0 0 10104000 8250 348 8591 35336 29640 29640 1 0 0 1511600 LLEIVER CSIRERMLYSSCKSRLLEIVERQLQMDVIR LYSSCKSRLLEIVERQLQMDVIRKIEIDNG R L L E R Q 0 1 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 870.51747 Q12792 Q12792 279 285 TWF1 Twinfilin-1 yes yes 2 0.02811 94.262 By MS/MS 6 0 1 1 3047200 0 3047200 0 8251 1199 8592 35337 29641 29641 1 0 1054800 0 LLELGPKPEVAQQTR FKLKNFKTAATFARRLLELGPKPEVAQQTR LLELGPKPEVAQQTRKILSACEKNPTDAYQ R L L T R K 1 1 0 0 0 2 2 1 0 0 3 1 0 0 2 0 1 0 0 1 0 0 15 1 1677.9414 P53621 P53621 1128 1142 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 7.967E-05 118.33 By MS/MS 2 0 1 1 13110000 0 13110000 0 8252 922 8593 35338 29642 29642 1 0 5903400 0 LLELLPGK GYAEVVVASENSVHKLLELLPGKVLNGEKV SENSVHKLLELLPGKVLNGEKVDVRPATRQ K L L G K V 0 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 8 0 881.5586 Q8N684 Q8N684 141 148 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 0.011508 91.906 By matching By MS/MS By MS/MS 4.71 1.28 1 3 1 1 1 1 4 2 39831000 738070 11164000 27929000 8253 1610 8594 35339;35340;35341;35342;35343;35344;35345 29643;29644;29645;29646 29646 4 575820 3852800 4708600 LLELTSSYSPDVSDYK LLAAAPQVGEKIAFKLLELTSSYSPDVSDY LELTSSYSPDVSDYKEGRILSHNPETQQVD K L L Y K E 0 0 0 2 0 0 1 0 0 0 3 1 0 0 1 4 1 0 2 1 0 0 16 0 1815.8778 P38432 P38432 481 496 COIL Coilin yes yes 2 0.00096554 95.508 By MS/MS 3 0 1 1 10553000 0 0 10553000 8254 772 8595 35346 29647 29647 1 0 0 2046700 LLEMNLMHAPQVADAILGNQMFTHYDR ALKNNRPSEGPLQTRLLEMNLMHAPQVADA ADAILGNQMFTHYDRAHIAQLCEKAGLLQR R L L D R A 3 1 2 2 0 2 1 1 2 1 4 0 3 1 1 0 1 0 1 1 0 0 27 0 3127.5042 Q00610 Q00610 584 610 CLTC Clathrin heavy chain 1 yes yes 3;4 4.2917E-27 119.14 By MS/MS 1.8 0.748 2 2 1 5 79328000 0 0 79328000 8255 1125 8596 35347;35348;35349;35350;35351 29648;29649;29650;29651;29652;29653;29654 29650 7 0 0 17242000 LLENMPMPWEQIR VYLGALKYMPHAVLKLLENMPMPWEQIRDV LKLLENMPMPWEQIRDVPVLYHITGAISFV K L L I R D 0 1 1 0 0 1 2 0 0 1 2 0 2 0 2 0 0 1 0 0 0 0 13 0 1655.8164 Q6P2Q9 Q6P2Q9 102 114 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 7.5423E-05 155.26 By MS/MS By MS/MS 3 2.83 2 1 1 2 23350000 0 6384700 16965000 8256 1490 8597 35352;35353;35354 29655;29656;29657;29658 29657 4 0 3120800 3473200 LLEPLVTQVTTLVNTSNK WDPKSLEIRTLTVERLLEPLVTQVTTLVNT PLVTQVTTLVNTSNKGPSGKKKGRSKKAHV R L L N K G 0 0 2 0 0 1 1 0 0 0 4 1 0 0 1 1 4 0 0 3 0 0 18 0 1969.1096 P26232 P26232 27 44 CTNNA2 Catenin alpha-2 yes yes 2;3 1.6432E-08 147.26 By MS/MS By MS/MS 2 0 3 2 1 42314000 0 37787000 4526800 8257 666 8598 35355;35356;35357 29659;29660;29661 29659 3 0 17016000 1023000 LLEPVLLLGK GRPLEMIEPRTLQYKLLEPVLLLGKERFAG TLQYKLLEPVLLLGKERFAGVDIRVRVKGG K L L G K E 0 0 0 0 0 0 1 1 0 0 5 1 0 0 1 0 0 0 0 1 0 0 10 0 1093.7111 P62249 P62249 51 60 RPS16 40S ribosomal protein S16 yes yes 2 0.00023946 124.98 By MS/MS By MS/MS 5.86 3.04 2 1 1 1 2 2 2 1 2 8 6 685680000 0 182270000 503400000 8258 1010 8599 35358;35359;35360;35361;35362;35363;35364;35365;35366;35367;35368;35369;35370;35371 29662;29663;29664;29665;29666;29667;29668;29669;29670;29671;29672;29673;29674;29675;29676;29677;29678;29679 29674 18 0 112240000 118830000 LLEPVVSMSDMLR PGAIEMTWMDVPGDKLLEPVVSMSDMLRSL DKLLEPVVSMSDMLRSLSNTKPTVNEHDLL K L L L R S 0 1 0 1 0 0 1 0 0 0 3 0 2 0 1 2 0 0 0 2 0 0 13 0 1488.768 O75351 O75351 404 416 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 2 0.0003305 140.49 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 8171400 0 2799800 5371600 8259 252 8600 35372;35373;35374 29680;29681 29681 2 0 995280 877360 LLEQALVIEEQLR NFLEIKNKFLARRFKLLEQALVIEEQLRRA FKLLEQALVIEEQLRRAAYLNMSEDPSHPS K L L L R R 1 1 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 13 0 1552.8825 Q14839;Q12873;Q8TDI0 Q14839 1788 1800 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2;3 1.0455E-07 171.92 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 19271000 0 1505300 17766000 8260 1321;1662;1205 8601 35375;35376;35377;35378 29682;29683;29684 29683 3 0 735760 3861100 LLEQALVIEEQLRR NFLEIKNKFLARRFKLLEQALVIEEQLRRA KLLEQALVIEEQLRRAAYLNMSEDPSHPSM K L L R R A 1 2 0 0 0 2 3 0 0 1 4 0 0 0 0 0 0 0 0 1 0 0 14 1 1708.9836 Q14839;Q12873;Q8TDI0 Q14839 1788 1801 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2;3 3.2048E-17 192.3 By MS/MS 1 0 2 2 15877000 0 0 15877000 8261 1321;1662;1205 8602 35379;35380 29685;29686 29686 2 0 0 3421000 LLEQQELR PLVSKISEKRKKKLRLLEQQELREKEEEEE KRKKKLRLLEQQELREKEEEEEPEGKPSDA R L L L R E 0 1 0 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1027.5662 Q9BSC4 Q9BSC4 523 530 NOL10 Nucleolar protein 10 yes yes 2 0.00047622 129.4 By MS/MS By MS/MS 3 0 2 1 1 14987000 0 3377200 11610000 8262 1895 8603 35381;35382 29687;29688 29688 2 0 1439700 2251700 LLEQYKEESK DEITYVELQKEEAQKLLEQYKEESKKALPP EEAQKLLEQYKEESKKALPPEKKQNTGSKK K L L S K K 0 0 0 0 0 1 3 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 10 1 1265.6503 Q00839 Q00839 665 674 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 2.4991E-15 175.73 By MS/MS By MS/MS 2.86 1.25 2 4 4 2 2 5 9 227670000 0 118410000 109270000 8263 1127 8604 35383;35384;35385;35386;35387;35388;35389;35390;35391;35392;35393;35394;35395;35396 29689;29690;29691;29692;29693;29694;29695;29696;29697;29698;29699;29700;29701 29691 13 0 53127000 21756000 LLEQYKEESKK DEITYVELQKEEAQKLLEQYKEESKKALPP EAQKLLEQYKEESKKALPPEKKQNTGSKKS K L L K K A 0 0 0 0 0 1 3 0 0 0 2 3 0 0 0 1 0 0 1 0 0 0 11 2 1393.7453 Q00839 Q00839 665 675 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 0.00010183 137.89 By MS/MS By MS/MS 2.25 0.968 2 3 2 1 5 3 130560000 0 98577000 31978000 8264 1127 8605 35397;35398;35399;35400;35401;35402;35403;35404 29702;29703;29704;29705;29706;29707;29708 29703 7 0 43964000 6974300 LLESLDQLELR GRFCRSSSMADRSSRLLESLDQLELRVEAL RSSRLLESLDQLELRVEALREAATAVEQEK R L L L R V 0 1 0 1 0 1 2 0 0 0 5 0 0 0 0 1 0 0 0 0 0 0 11 0 1327.7347 O95816 O95816 28 38 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 1.7506E-09 166.19 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 50011000 0 6525200 43486000 8265 342 8606 35405;35406;35407 29709;29710;29711 29709 3 0 3746800 7675100 LLETIDQLYLEYAK ALTQKRREALERTEKLLETIDQLYLEYAKR KLLETIDQLYLEYAKRAAPFNNWMEGAMED K L L A K R 1 0 0 1 0 1 2 0 0 1 4 1 0 0 0 0 1 0 2 0 0 0 14 0 1710.908 P12814 P12814 503 516 ACTN1 Alpha-actinin-1 yes yes 2 0.00042179 123.67 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 5241000 0 2011700 3229400 8266 540 8607 35408;35409;35410 29712;29713 29713 2 0 905890 720750 LLETLFVHR VHLACICHSFHYIKRLLETLFVHRFSHGTM FHYIKRLLETLFVHRFSHGTMPLRNIFKNC R L L H R F 0 1 0 0 0 0 1 0 1 0 3 0 0 1 0 0 1 0 0 1 0 0 9 0 1126.6499 Q9NZ01 Q9NZ01 142 150 TECR Very-long-chain enoyl-CoA reductase yes yes 2 0.0010401 109.86 By matching By MS/MS 6.33 0.471 2 1 1 2 4658600 1440000 0 3218600 8267 2100 8608 35411;35412;35413 29714 29714 1 1917400 0 505620 LLETTDRPDGHQNNLR ATYCLSSSFELIVQKLLETTDRPDGHQNNL LETTDRPDGHQNNLRSSAYESLMEIVKNSA K L L L R S 0 2 2 2 0 1 1 1 1 0 3 0 0 0 1 0 2 0 0 0 0 0 16 1 1877.9344 Q14974 Q14974 510 525 KPNB1 Importin subunit beta-1 yes yes 3;4 1.9091E-09 172.1 By MS/MS By MS/MS 2.67 1.15 1 4 2 1 1 3 6 86196000 0 13314000 72882000 8268 1325 8609 35414;35415;35416;35417;35418;35419;35420;35421;35422 29715;29716;29717;29718;29719;29720 29717 6 0 6051800 14504000 LLETTEEDKQK KEMKAAAREEAKNIKLLETTEEDKQKNFLF KNIKLLETTEEDKQKNFLFLRLWDRNMDIA K L L Q K N 0 0 0 1 0 1 3 0 0 0 2 2 0 0 0 0 2 0 0 0 0 0 11 1 1332.6773 Q7L0Y3 Q7L0Y3 165 175 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.050267 98.033 By MS/MS 5 0 1 1 1400800 0 1400800 0 8269 1521 8610 35423 29721 29721 1 0 361090 0 LLETVLGYISAVAQSMER VESGGPEILKGLEERLLETVLGYISAVAQS TVLGYISAVAQSMERNADKLTVKFWRALLS R L L E R N 2 1 0 0 0 1 2 1 0 1 3 0 1 0 0 2 1 0 1 2 0 0 18 0 1979.0398 Q9H583 Q9H583 1550 1567 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.066058 47.189 By MS/MS 1.5 0.5 1 1 2 1393500 0 0 1393500 8270 1984 8611 35424;35425 29722 29722 1 0 0 307960 LLETYLILVK VTKTNCCESSEQIKRLLETYLILVKHGSGT EQIKRLLETYLILVKHGSGTKIPTPADVCK R L L V K H 0 0 0 0 0 0 1 0 0 1 4 1 0 0 0 0 1 0 1 1 0 0 10 0 1203.7479 O75691 O75691 322 331 UTP20 Small subunit processome component 20 homolog yes yes 2 0.032651 77.318 By MS/MS 1.5 0.5 1 1 2 2448000 0 0 2448000 8271 280 8612 35426;35427 29723 29723 1 0 0 532380 LLEVDLK VREKDIQRFFSGYGRLLEVDLKNGYGFVEF RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD R L L L K N 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 7 0 828.49567 Q13247 Q13247 28 34 SRSF6 Serine/arginine-rich splicing factor 6 yes yes 2 0.01548 110.63 By MS/MS By matching 4.33 1.49 1 1 1 1 2 5 1 25840000 0 23776000 2063900 8272 1234 8613 35428;35429;35430;35431;35432;35433 29724;29725;29726 29726 3 0 7591300 308780 LLEVLSGER TDLYTDLRDGRMLIKLLEVLSGERLPKPTK GRMLIKLLEVLSGERLPKPTKGRMRIHCLE K L L E R L 0 1 0 0 0 0 2 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 9 0 1014.571 Q01082 Q01082 91 99 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00072693 131.06 By MS/MS 1 0 1 1 28802000 0 0 28802000 8273 1128 8614 35434 29727 29727 1 0 0 6205800 LLEVQGSRPGK MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL IIGRLLEVQGSRPGKNVQLTENEIRGLCLK R L L G K N 0 1 0 0 0 1 1 2 0 0 2 1 0 0 1 1 0 0 0 1 0 0 11 1 1182.6721 P62136 P62136 16 26 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2 0.031374 103.7 By MS/MS By matching 6 0 2 1 1 8263200 0 3177500 5085700 8274 1006 8615 35435;35436 29728 29728 1 0 1100000 760870 LLEVYDQLFK FVIQTMNEIGVPLPRLLEVYDQLFKSRDPF VPLPRLLEVYDQLFKSRDPFWNRMKKPLHL R L L F K S 0 0 0 1 0 1 1 0 0 0 3 1 0 1 0 0 0 0 1 1 0 0 10 0 1266.686 O75694 O75694 1299 1308 NUP155 Nuclear pore complex protein Nup155 yes yes 2 0.00025897 140.5 By MS/MS 2 0.816 1 1 1 3 18481000 0 0 18481000 8275 281 8616 35437;35438;35439 29729;29730 29730 2 0 0 4009000 LLFDETQGKPAVAVIDNGR SATSRNIGVRRIQIKLLFDETQGKPAVAVI ETQGKPAVAVIDNGRGMTSKQLNNWAVYRL K L L G R G 2 1 1 2 0 1 1 2 0 1 2 1 0 1 1 0 1 0 0 2 0 0 19 1 2042.0797 A6NHR9 A6NHR9 169 187 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 2.002E-06 104.61 By MS/MS 1 0 1 1 13351000 0 0 13351000 8276 15 8617 35440 29731 29731 1 0 0 2876800 LLFDQAYQMR DCLSKWVGESERQLRLLFDQAYQMRPSIIF ERQLRLLFDQAYQMRPSIIFFDEIDGLAPV R L L M R P 1 1 0 1 0 2 0 0 0 0 2 0 1 1 0 0 0 0 1 0 0 0 10 0 1283.6332 Q6PL18 Q6PL18 515 524 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 1.8804E-16 179.73 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 32654000 0 3724600 28929000 8277 1498 8618 35441;35442;35443;35444;35445;35446 29732;29733;29734;29735 29734 4 0 1677200 6303300 LLFGPTVR AHTRYFRGGMLTNARLLFGPTVRLPDLIIF GMLTNARLLFGPTVRLPDLIIFLHTLNNIF R L L V R L 0 1 0 0 0 0 0 1 0 0 2 0 0 1 1 0 1 0 0 1 0 0 8 0 901.53854 Q9Y399 Q9Y399 181 188 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 2 0.0045431 101.28 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 20630000 0 9018100 11612000 8278 2260 8619 35447;35448;35449 29736;29737;29738 29738 3 0 4703200 1737300 LLFNDVQTLK GEVERDLDKADSMIRLLFNDVQTLKDGRHP DSMIRLLFNDVQTLKDGRHPQGEQMYRRVY R L L L K D 0 0 1 1 0 1 0 0 0 0 3 1 0 1 0 0 1 0 0 1 0 0 10 0 1189.6707 Q15149 Q15149 588 597 PLEC Plectin yes yes 2 0.0003776 138.1 By MS/MS 1 0 1 1 21117000 0 21117000 0 8279 1348 8620 35450 29739 29739 1 0 10322000 0 LLFPAVDDNLLK ASPRYIFTMLSTLARLLFPAVDDNLLKFLY LARLLFPAVDDNLLKFLYDDNQRVEPEWYI R L L L K F 1 0 1 2 0 0 0 0 0 0 4 1 0 1 1 0 0 0 0 1 0 0 12 0 1356.7653 Q02880 Q02880 837 848 TOP2B DNA topoisomerase 2-beta yes yes 2 0.0007046 121.64 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 76307000 493790 17883000 57931000 8280 1150 8621 35451;35452;35453;35454;35455 29740;29741 29740 2 493790 8364300 12449000 LLFPPKDDHTLK ASPRYIFTMLSSLARLLFPPKDDHTLKFLY LARLLFPPKDDHTLKFLYDDNQRVEPEWYI R L L L K F 0 0 0 2 0 0 0 0 1 0 3 2 0 1 2 0 1 0 0 0 0 0 12 1 1422.7871 P11388 P11388 816 827 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0054164 82.362 By MS/MS 1.5 0.5 1 1 2 22777000 0 0 22777000 8281 524 8622 35456;35457 29742 29742 1 0 0 4931400 LLFQELMSMSIAPR NKTQISLVRMPYACKLLFQELMSMSIAPRM KLLFQELMSMSIAPRMMSV___________ K L L P R M 1 1 0 0 0 1 1 0 0 1 3 0 2 1 1 2 0 0 0 0 0 0 14 0 1634.8524 P30876 P30876 1157 1170 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 3.4671E-07 167.12 By MS/MS 1.5 0.5 1 1 2 6775600 0 0 6775600 8282 715 8623 35458;35459 29743 29743 1 0 0 1525600 LLFQLAQLHTLEK KAIQISQQTPYWHCRLLFQLAQLHTLEKDL CRLLFQLAQLHTLEKDLVSACDLLGVGAEY R L L E K D 1 0 0 0 0 2 1 0 1 0 5 1 0 1 0 0 1 0 0 0 0 0 13 0 1552.8977 Q9Y6X3 Q9Y6X3 147 159 MAU2 MAU2 chromatid cohesion factor homolog yes yes 3 0.0022425 85.845 By MS/MS 3.5 0.5 1 1 2 6727600 0 0 6727600 8283 2318 8624 35460;35461 29744 29744 1 0 0 1164400 LLFSATLTQNPEK VTAASTCCPQMPLQKLLFSATLTQNPEKLQ QKLLFSATLTQNPEKLQQLGLHQPRLFSTG K L L E K L 1 0 1 0 0 1 1 0 0 0 3 1 0 1 1 1 2 0 0 0 0 0 13 0 1460.7875 Q8N8A6 Q8N8A6 428 440 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.020994 82.261 By MS/MS 3 0 1 1 3723000 0 0 3723000 8284 1615 8625 35462 29745 29745 0 0 0 722090 LLFWGGSYGGAGQPQLISR HFALMQRDSWVDIFRLLFWGGSYGGAGQPQ GGSYGGAGQPQLISRNWFGLPGRLDAAMAG R L L S R N 1 1 0 0 0 2 0 5 0 1 3 0 0 1 1 2 0 1 1 0 0 0 19 0 2006.0374 CON__Q3ZBS7 CON__Q3ZBS7 323 341 yes yes 2;3 7.7862E-135 273.3 By MS/MS By MS/MS By MS/MS 5.64 2.43 1 1 5 5 5 6 3 1 2 4 11 10 12 609050000 141000000 65095000 402960000 + 8285 88 8626 35463;35464;35465;35466;35467;35468;35469;35470;35471;35472;35473;35474;35475;35476;35477;35478;35479;35480;35481;35482;35483;35484;35485;35486;35487;35488;35489;35490;35491;35492;35493;35494;35495 29746;29747;29748;29749;29750;29751;29752;29753;29754;29755;29756;29757;29758;29759;29760;29761;29762;29763;29764;29765;29766;29767;29768;29769;29770;29771;29772;29773;29774;29775;29776;29777;29778;29779;29780;29781;29782;29783;29784;29785;29786 29764 41 137910000 26340000 73713000 LLGAALPLLTK LLKMQFWPASYLCFRLLGAALPLLTKEQLH LCFRLLGAALPLLTKEQLHLVMQGDVIRHY R L L T K E 2 0 0 0 0 0 0 1 0 0 5 1 0 0 1 0 1 0 0 0 0 0 11 0 1108.722 Q9BQG0 Q9BQG0 308 318 MYBBP1A Myb-binding protein 1A yes yes 2 0.0046982 102.06 By MS/MS By MS/MS 3 1.73 2 2 1 1 1 1 3 5 54432000 0 22389000 32043000 8286 1885 8627 35496;35497;35498;35499;35500;35501;35502;35503 29787;29788;29789;29790;29791;29792;29793 29789 7 0 10129000 6668600 LLGASELPIVTPALR IGMVVKTGVVPQLVKLLGASELPIVTPALR LLGASELPIVTPALRAIGNIVTGTDEQTQV K L L L R A 2 1 0 0 0 0 1 1 0 1 4 0 0 0 2 1 1 0 0 1 0 0 15 0 1548.9239 P52292 P52292 301 315 KPNA2 Importin subunit alpha-1 yes yes 2 5.2035E-25 199.09 By MS/MS By MS/MS By MS/MS 4.08 1.98 2 1 2 3 1 2 2 2 7 4 221920000 4041200 97852000 120020000 8287 903 8628 35504;35505;35506;35507;35508;35509;35510;35511;35512;35513;35514;35515;35516 29794;29795;29796;29797;29798;29799;29800;29801;29802;29803;29804;29805 29798 11 3289400 33651000 20003000 LLGDLWQR EMESAIKKRRLEDSKLLGDLWQRLSHSRKK RRLEDSKLLGDLWQRLSHSRKKLMEIFHII K L L Q R L 0 1 0 1 0 1 0 1 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 999.55016 Q9H1I8 Q9H1I8 304 311 ASCC2 Activating signal cointegrator 1 complex subunit 2 yes yes 2 0.020092 84.244 By matching By MS/MS 2.5 0.5 1 1 1 1 4308600 0 1485800 2822800 8288 1969 8629 35517;35518 29806 29806 1 0 669090 547490 LLGFGSALLDNVDPNPENFVGAGIIQTK FKANHPMDAEVTKAKLLGFGSALLDNVDPN PNPENFVGAGIIQTKALQVGCLLRLEPNAQ K L L T K A 2 0 3 2 0 1 1 4 0 2 4 1 0 2 2 1 1 0 0 2 0 0 28 0 2898.5127 O95782 O95782 908 935 AP2A1 AP-2 complex subunit alpha-1 yes yes 3 6.4882E-15 91.767 By MS/MS 2 0 1 1 5975000 0 0 5975000 8289 339 8630 35519 29807 29807 1 0 0 1350200 LLGGVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGGVTIAQGGVLPN QGGVLPNIQAVLLPKKTSATVGPKAPSGGK K L L P K K 2 0 1 0 0 2 0 4 0 2 5 1 0 0 2 0 1 0 0 3 0 0 23 0 2270.3726 P16104;Q8IUE6 P16104 97 119 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 2;3 5.8145E-65 225.36 By MS/MS By MS/MS By MS/MS 6.39 2.31 1 1 1 1 3 3 6 2 1 5 12 1806200000 4048700 836130000 966050000 8290 574;1566 8631 35520;35521;35522;35523;35524;35525;35526;35527;35528;35529;35530;35531;35532;35533;35534;35535;35536;35537 29808;29809;29810;29811;29812;29813;29814;29815;29816;29817;29818;29819;29820;29821;29822 29812 15 3475900 379430000 149870000 LLGGVTIAQGGVLPNIQAVLLPKK RHLQLAIRNDEELNKLLGGVTIAQGGVLPN GGVLPNIQAVLLPKKTSATVGPKAPSGGKK K L L K K T 2 0 1 0 0 2 0 4 0 2 5 2 0 0 2 0 1 0 0 3 0 0 24 1 2398.4676 P16104;Q8IUE6 P16104 97 120 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 3 1.9189E-09 66.644 By MS/MS 8 0 1 1 0 0 0 0 8291 574;1566 8632 35538 29823 29823 1 0 0 0 LLGHEVEDVIIK FAVDETSVSGYIYHKLLGHEVEDVIIKCQL YHKLLGHEVEDVIIKCQLPKRFTAQGLPDL K L L I K C 0 0 0 1 0 0 2 1 1 2 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1363.7711 Q92900 Q92900 456 467 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.012761 67.952 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 13208000 0 2653500 10555000 8292 1729 8633 35539;35540;35541 29824;29825 29824 2 0 1194900 2365600 LLGKVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGKVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHHKTK______ K L L P K K 2 0 1 0 0 2 0 3 0 2 5 2 0 0 2 0 1 0 0 3 0 0 23 1 2341.4461 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;Q16777;Q6FI13 Q99878 97 119 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;HIST2H2AC;HIST2H2AA3 Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 2-C;Histone H2A type 2-A no no 2;3 5.2385E-19 137.73 By MS/MS By MS/MS 8.25 0.433 3 1 1 3 210260000 0 15918000 194340000 8293 497;1399;1473 8634 35542;35543;35544;35545 29826;29827;29828;29829;29830 29830 5 0 7242100 29893000 LLGLFGETLR LSHSERGALQDALRRLLGLFGETLRAAVTL DALRRLLGLFGETLRAAVTLRSRIGERVGL R L L L R A 0 1 0 0 0 0 1 2 0 0 4 0 0 1 0 0 1 0 0 0 0 0 10 0 1117.6495 O95613 O95613 1165 1174 PCNT Pericentrin yes yes 2 0.010885 88.177 By MS/MS 1 0 1 1 4169100 0 0 4169100 8294 331 8635 35546 29831 29831 1 0 0 898300 LLGLGSASGSVGR CKREGGDPEEKGVDRLLGLGSASGSVGRVA DRLLGLGSASGSVGRVAMSREDKEAAKLGL R L L G R V 1 1 0 0 0 0 0 4 0 0 3 0 0 0 0 3 0 0 0 1 0 0 13 0 1172.6513 Q9BU76 Q9BU76 118 130 MMTAG2 Multiple myeloma tumor-associated protein 2 yes yes 2 0.00034213 141.95 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 29530000 0 16166000 13364000 8295 1904 8636 35547;35548;35549 29832;29833 29833 2 0 6324300 1999400 LLGLPEDYLYGQTTTYLTYNDFINK KEWLTNFMEDRRQRKLLGLPEDYLYGQTTT GQTTTYLTYNDFINKELILFSNSDNERSIP K L L N K E 0 0 2 2 0 1 1 2 0 1 5 1 0 1 1 0 4 0 4 0 0 0 25 0 2954.459 P11388 P11388 677 701 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0004752 52.79 By MS/MS 1.5 0.5 1 1 2 29749000 0 0 29749000 8296 524 8637 35550;35551 29834 29834 1 0 0 6570000 LLGLPFIAGPVDIR ______________________________ RLLGLPFIAGPVDIRHFFTGLTIPDGGVHI R L L I R H 1 1 0 1 0 0 0 2 0 2 3 0 0 1 2 0 0 0 0 1 0 0 14 0 1479.8813 Q8IXT5 Q8IXT5 7 20 RBM12B RNA-binding protein 12B yes yes 2 0.00039563 127.42 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 16508000 0 5300500 11208000 8297 1587 8638 35552;35553;35554;35555;35556;35557 29835;29836;29837 29837 3 0 2393000 2389400 LLGMGDIEGLIDK IDDFEPFKTQPFISKLLGMGDIEGLIDKVN SKLLGMGDIEGLIDKVNELKLDDNEALIEK K L L D K V 0 0 0 2 0 0 1 3 0 2 3 1 1 0 0 0 0 0 0 0 0 0 13 0 1372.7272 P61011 P61011 294 306 SRP54 Signal recognition particle 54 kDa protein yes yes 2 0.0071252 94.465 By MS/MS 4 0 1 1 5366700 0 0 5366700 8298 974 8639 35558 29838 29838 1 0 0 876560 LLGNTFVALSDLR EEDQRLINLVGESLRLLGNTFVALSDLRCN LRLLGNTFVALSDLRCNLACTPPRHLHVVR R L L L R C 1 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 13 0 1417.7929 P46379 P46379 332 344 BAG6 Large proline-rich protein BAG6 yes yes 2 0.0039508 103.34 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 4980000 0 1309900 3670100 8299 826 8640 35559;35560;35561 29839;29840 29839 2 0 589880 816460 LLGNVLVVVLAR ELHCDKLHVDPENFRLLGNVLVVVLARRFG NFRLLGNVLVVVLARRFGSEFSPELQASFQ R L L A R R 1 1 1 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 4 0 0 12 0 1264.8231 CON__Q3SX09;CON__P02070 CON__Q3SX09 160 171 yes no 2 3.539E-06 161.86 By MS/MS By MS/MS 7.71 1.67 1 1 1 1 2 1 2 5 73195000 55449000 0 17746000 + 8300 82 8641 35562;35563;35564;35565;35566;35567;35568 29841;29842;29843;29844;29845;29846;29847 29846 7 92888000 0 3591500 LLGQFTLIGIPPAPR IKVCQGEREMAGDNKLLGQFTLIGIPPAPR LLGQFTLIGIPPAPRGVPQIEVTFDIDANG K L L P R G 1 1 0 0 0 1 0 2 0 2 3 0 0 1 3 0 1 0 0 0 0 0 15 0 1591.945 P38646 P38646 499 513 HSPA9 Stress-70 protein, mitochondrial yes yes 2;3 4.7834E-05 159.09 By matching By MS/MS By MS/MS 3.14 0.35 6 1 1 5 1 20704000 752220 11778000 8174200 8301 774 8642 35569;35570;35571;35572;35573;35574;35575 29848;29849;29850;29851;29852;29853;29854;29855;29856 29848 9 867900 4996000 1585400 LLGQIVDR CVLTGTPESIEQAKRLLGQIVDRCRNGPGF SIEQAKRLLGQIVDRCRNGPGFHNDIDSNS R L L D R C 0 1 0 1 0 1 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 8 0 912.53927 Q96I24 Q96I24 140 147 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0009831 122.13 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 140170000 0 84360000 55809000 8302 1797 8643 35576;35577;35578;35579 29857;29858;29859 29859 3 0 29735000 10514000 LLGQPSLDSLPIPAPR GSGKTLSYLLPLLQRLLGQPSLDSLPIPAP LGQPSLDSLPIPAPRGLVLVPSRELAQQVR R L L P R G 1 1 0 1 0 1 0 1 0 1 4 0 0 0 4 2 0 0 0 0 0 0 16 0 1672.9512 Q9NUL7 Q9NUL7 190 205 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 2 0.00012828 100.55 By MS/MS 4 0 1 1 4964100 0 4964100 0 8303 2061 8644 35580 29860 29860 1 0 1647400 0 LLGRVTIAQGGVLPNIQAVLLPK RHLQLAIRNDEELNKLLGRVTIAQGGVLPN QGGVLPNIQAVLLPKKTESHHKAKGK____ K L L P K K 2 1 1 0 0 2 0 3 0 2 5 1 0 0 2 0 1 0 0 3 0 0 23 1 2369.4522 Q93077;Q7L7L0;P04908 Q93077 97 119 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 3 0.00011494 69.779 By matching By MS/MS 8 0 2 1 1 22861000 0 10067000 12794000 8304 1740 8645 35581;35582 29861 29861 1 0 4580100 1961400 LLGSMPENAQIDDDVFDK NSNAVRFRVCLLINKLLGSMPENAQIDDDV SMPENAQIDDDVFDKINKAMLIRLKDKIPN K L L D K I 1 0 1 4 0 1 1 1 0 1 2 1 1 1 1 1 0 0 0 1 0 0 18 0 2005.9303 Q9BPX3 Q9BPX3 125 142 NCAPG Condensin complex subunit 3 yes yes 2 0.0001312 98.942 By MS/MS 2 0 1 1 6506800 0 0 6506800 8305 1873 8646 35583 29862 29862 1 0 0 1470400 LLGVSWR TLEDGSRLNSKQLNRLLGVSWRLMQIQPNR LNSKQLNRLLGVSWRLMQIQPNREDTETLI R L L W R L 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 1 0 1 0 0 7 0 829.48102 Q9NXF1 Q9NXF1 482 488 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.0022842 144.29 By matching By MS/MS By MS/MS 2 0 3 1 1 1 9271600 1343900 3876000 4051700 8306 2089 8647 35584;35585;35586 29863;29864 29864 2 1619300 1745400 915610 LLGWIQNK EEEDEEAKKQTPKQRLLGWIQNKLPQLPIT KQTPKQRLLGWIQNKLPQLPITNFSRDWQS R L L N K L 0 0 1 0 0 1 0 1 0 1 2 1 0 0 0 0 0 1 0 0 0 0 8 0 970.56 P21333;O75369;Q14315 P21333 172 179 FLNA;FLNB;FLNC Filamin-A;Filamin-B;Filamin-C no no 2 0.00015507 143.18 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 43403000 0 27816000 15587000 8307 623;1298;254 8648 35587;35588;35589 29865;29866;29867 29865 3 0 13422000 3358500 LLHDQVGVIQFGPYK PVDHILAGSFETAMRLLHDQVGVIQFGPYK LLHDQVGVIQFGPYKQLFLQTYARGRTTYQ R L L Y K Q 0 0 0 1 0 2 0 2 1 1 2 1 0 1 1 0 0 0 1 2 0 0 15 0 1712.925 P53621 P53621 942 956 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.017393 53.491 By MS/MS By matching 2 0.816 1 1 1 2 1 9948700 0 8504500 1444200 8308 922 8649 35590;35591;35592 29868 29868 1 0 3896900 280100 LLHGFNAEGIHFS SDKRARSMDIDDFIRLLHGFNAEGIHFS__ IRLLHGFNAEGIHFS_______________ R L L F S - 1 0 1 0 0 0 1 2 2 1 2 0 0 2 0 1 0 0 0 0 0 0 13 0 1440.715 Q9UNQ2 Q9UNQ2 301 313 DIMT1 Probable dimethyladenosine transferase yes yes 2;3 0.00073133 118.04 By MS/MS By MS/MS By MS/MS 6 0 4 1 2 1 59452000 4353400 34313000 20785000 8309 2210 8650 35593;35594;35595;35596 29869;29870;29871;29872 29869 4 5796600 11878000 3109700 LLHIEELR DTGDAVLNEAAQILRLLHIEELRELQTKIN EAAQILRLLHIEELRELQTKINEAIVAVQA R L L L R E 0 1 0 0 0 0 2 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 1021.592 Q9Y224 Q9Y224 206 213 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.013817 89.142 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 29519000 0 2855900 26663000 8310 2227 8651 35597;35598;35599 29873;29874;29875 29875 3 0 1639900 4553800 LLHIYYQNSIDDR AGKDAAKQIAWIKDKLLHIYYQNSIDDRLL DKLLHIYYQNSIDDRLLVERIFAQYMVPHN K L L D R L 0 1 1 2 0 1 0 0 1 2 2 0 0 0 0 1 0 0 2 0 0 0 13 0 1648.8209 Q9NTI5 Q9NTI5 440 452 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.0026877 83.314 By MS/MS 1.5 0.5 1 1 2 29713000 0 0 29713000 8311 2053 8652 35600;35601 29876;29877 29877 2 0 0 6546000 LLHSFLAK STNWRDHVKAMEERKLLHSFLAKSQDGLPP KAMEERKLLHSFLAKSQDGLPPRRMKDSYI K L L A K S 1 0 0 0 0 0 0 0 1 0 3 1 0 1 0 1 0 0 0 0 0 0 8 0 927.55419 Q9Y305 Q9Y305 66 73 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.00089088 123.45 By MS/MS 5 0 1 1 10134000 0 10134000 0 8312 2256 8653 35602 29878 29878 1 0 2612300 0 LLHTLEGHAMPIR AIDGIINIFDIATGKLLHTLEGHAMPIRSL GKLLHTLEGHAMPIRSLTFSPDSQLLVTAS K L L I R S 1 1 0 0 0 0 1 1 2 1 3 0 1 0 1 0 1 0 0 0 0 0 13 0 1486.8079 Q9GZS3 Q9GZS3 182 194 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 3 0.00033832 109.16 By matching By MS/MS 7.2 1.17 2 1 1 1 1 4 31455000 0 2501100 28954000 8313 1954 8654 35603;35604;35605;35606;35607 29879 29879 1 0 865810 7387800 LLIDGDGAGDDRR ______________________________ KRLLIDGDGAGDDRRINLLVKSFIKWCNSG R L L R R I 1 2 0 4 0 0 0 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 13 1 1371.6743 Q6I9Y2 Q6I9Y2 14 26 THOC7 THO complex subunit 7 homolog yes yes 2;3 0.0088128 98.249 By matching By MS/MS 6.5 0.5 2 2 1 3 37800000 2764500 0 35035000 8314 1474 8655 35608;35609;35610;35611 29880;29881 29880 1 3681000 0 6147700 LLIELLR LKYWQRLRHDLERARLLIELLRKREKLKRE RHDLERARLLIELLRKREKLKREQVKVEQV R L L L R K 0 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 7 0 868.57459 O95696 O95696 537 543 BRD1 Bromodomain-containing protein 1 yes yes 2 0.0031037 141.98 By MS/MS 2 0 1 1 2634700 0 0 2634700 8315 334 8656 35612 29882 29882 1 0 0 595390 LLIHQSLAGGIIGVK NYQHYKGSDFDCELRLLIHQSLAGGIIGVK LLIHQSLAGGIIGVKGAKIKELRENTQTTI R L L V K G 1 0 0 0 0 1 0 3 1 3 3 1 0 0 0 1 0 0 0 1 0 0 15 0 1517.9293 P61978 P61978 149 163 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 1.3716E-107 264.84 By MS/MS By MS/MS By MS/MS 3.95 1.86 2 3 3 6 1 2 3 2 8 10 863200000 25730000 403220000 434250000 8316 1002 8657 35613;35614;35615;35616;35617;35618;35619;35620;35621;35622;35623;35624;35625;35626;35627;35628;35629;35630;35631;35632 29883;29884;29885;29886;29887;29888;29889;29890;29891;29892;29893;29894;29895;29896;29897;29898;29899;29900;29901;29902;29903 29887 21 20074000 135420000 74186000 LLILALER SPIPFPPLSYKHDTKLLILALERLKEAYSV SYKHDTKLLILALERLKEAYSVKSRLNQSQ K L L E R L 1 1 0 0 0 0 1 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 8 0 939.6117 Q6P2Q9 Q6P2Q9 838 845 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00066657 126.67 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 30575000 0 1683800 28892000 8317 1490 8658 35633;35634;35635 29904;29905 29905 2 0 823010 6283300 LLILMEAR PEMQYVKIKDVARGRLLILMEARLSALYKL KDVARGRLLILMEARLSALYKLESDYEILE R L L A R L 1 1 0 0 0 0 1 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 8 0 957.56812 P41252 P41252 255 262 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 2 0.0086823 95.352 By MS/MS 2 0 1 1 2802600 0 0 2802600 8318 796 8659 35636 29906 29906 1 0 0 633340 LLINLYK DANFTVVVMMPEAKRLLINLYKLVKSQISV VMMPEAKRLLINLYKLVKSQISVYSELNKI R L L Y K L 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 7 0 875.54804 Q9H8H0 Q9H8H0 670 676 NOL11 Nucleolar protein 11 yes yes 2 0.017913 106.29 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 20589000 0 11713000 8876100 8319 1995 8660 35637;35638;35639 29907;29908 29907 2 0 4993100 1696000 LLITGTPLQNSLK SLLYKTLIDFKSNHRLLITGTPLQNSLKEL HRLLITGTPLQNSLKELWSLLHFIMPEKFS R L L L K E 0 0 1 0 0 1 0 1 0 1 4 1 0 0 1 1 2 0 0 0 0 0 13 0 1396.829 O14647;O14646 O14646 639 651 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 0.00027718 133.75 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 30258000 0 10347000 19910000 8320 141;142 8661 35640;35641;35642;35643 29909;29910;29911 29911 3 0 4963700 4331600 LLIVSTTPYSEK SYQSPHGIPIDLLDRLLIVSTTPYSEKDTK LDRLLIVSTTPYSEKDTKQILRIRCEEEDV R L L E K D 0 0 0 0 0 0 1 0 0 1 2 1 0 0 1 2 2 0 1 1 0 0 12 0 1349.7442 Q9Y230 Q9Y230 354 365 RUVBL2 RuvB-like 2 yes yes 2 0.00027342 130.41 By matching By MS/MS By MS/MS 4.4 0.49 3 2 1 2 2 73513000 2024100 16799000 54691000 8321 2228 8662 35644;35645;35646;35647;35648 29912;29913;29914 29913 3 1579100 4821100 8526900 LLIYAVLPTGDVIGDSAK SISIPVKSDIAPVARLLIYAVLPTGDVIGD YAVLPTGDVIGDSAKYDVENCLANKVDLSF R L L A K Y 2 0 0 2 0 0 0 2 0 2 3 1 0 0 1 1 1 0 1 2 0 0 18 0 1844.0295 P01023 P01023 540 557 A2M Alpha-2-macroglobulin yes yes 2 3.0475E-05 101.53 By MS/MS 9.5 0.5 1 1 2 5025800 5025800 0 0 8322 370 8663 35649;35650 29915 29915 1 3628300 0 0 LLIYDASNR SYLAWYQQKPGQAPRLLIYDASNRATGIPA PGQAPRLLIYDASNRATGIPARFSGSGPGT R L L N R A 1 1 1 1 0 0 0 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 9 0 1063.5662 A0A0A0MRZ8;P04433 A0A0A0MRZ8 66 74 IGKV3D-11 Ig kappa chain V-III region VG yes no 2 0.00097902 110.12 By MS/MS 9.5 0.5 1 1 2 13968000 13968000 0 0 8323 2 8664 35651;35652 29916 29916 1 10530000 0 0 LLIYETEAKK VLDEEAEVFIVKMWRLLIYETEAKKIGLVK VKMWRLLIYETEAKKIGLVK__________ R L L K K I 1 0 0 0 0 0 2 0 0 1 2 2 0 0 0 0 1 0 1 0 0 0 10 1 1206.686 P49756 P49756 829 838 RBM25 RNA-binding protein 25 yes yes 3 0.061178 41.164 By MS/MS 2 0 1 1 5281300 0 0 5281300 8324 866 8665 35653 29917 29917 1 0 0 1193500 LLIYGASSR SYLAWYQQKPGQAPRLLIYGASSRATGIPD PGQAPRLLIYGASSRATGIPDRFSGSGSGT R L L S R A 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 2 0 0 1 0 0 0 9 0 978.54983 P01619 P01619 67 75 Ig kappa chain V-III region B6 yes yes 2 0.00040447 120.46 By MS/MS 9.5 0.5 1 1 2 25564000 25564000 0 0 8325 377 8666 35654;35655 29918;29919 29919 2 24560000 0 0 LLIYWASTR NYLAWYQQKPGQPPKLLIYWASTRESGVPD PGQPPKLLIYWASTRESGVPDRFSGSGSGT K L L T R E 1 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 1 1 0 0 0 9 0 1121.6233 P06312 P06312 72 80 IGKV4-1 Ig kappa chain V-IV region yes yes 2 0.00026797 139.88 By MS/MS 9.5 0.5 1 1 2 7379500 7379500 0 0 8326 439 8667 35656;35657 29920;29921 29920 2 5818700 0 0 LLKEEDMTK ATTATMATSGSARKRLLKEEDMTKVEFETS GSARKRLLKEEDMTKVEFETSEEVDVTPTF R L L T K V 0 0 0 1 0 0 2 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 9 1 1105.5689 P38919 P38919 17 25 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.0047521 134.26 By MS/MS 5 0 1 1 4695600 0 4695600 0 8327 775 8668 35658 29922 29922 1 0 1210400 0 LLKEYQELMNVK GLEDALQKAKQDLARLLKEYQELMNVKLAL LARLLKEYQELMNVKLALDVEIATYRKLLE R L L V K L 0 0 1 0 0 1 2 0 0 0 3 2 1 0 0 0 0 0 1 1 0 0 12 1 1506.8116 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 444 455 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.00049987 143.24 By MS/MS 9 0 1 1 5564400 5564400 0 0 + 8328 68;37;47;69 8669 35659 29923 29923 1 3123300 0 0 LLKPFTWIVPGVLMGGEK PTRELALQSFDTVQKLLKPFTWIVPGVLMG PFTWIVPGVLMGGEKRKSEKARLRKGINIL K L L E K R 0 0 0 0 0 0 1 3 0 1 3 2 1 1 2 0 1 1 0 2 0 0 18 1 1984.122 Q9H8H2 Q9H8H2 328 345 DDX31 Probable ATP-dependent RNA helicase DDX31 yes yes 3 0.032357 40.432 By matching By MS/MS 2.5 0.5 1 1 1 1 5373500 0 467500 4906000 8329 1996 8670 35660;35661 29924 29924 1 0 210520 951530 LLLAALGR CETKKAYFLGYMVHRLLLAALGRRELDDRD LGYMVHRLLLAALGRRELDDRDHYGNKRLD R L L G R R 2 1 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 8 0 825.54362 P30876 P30876 372 379 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 0.00015507 143.18 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 11095000 0 2806700 8288300 8330 715 8671 35662;35663;35664;35665 29925;29926 29926 2 0 1263900 1829300 LLLAVFVTPLTDLR NVIQALEKHEGKHQKLLLAVFVTPLTDLRS KLLLAVFVTPLTDLRSDFSKFQEMIETTLD K L L L R S 1 1 0 1 0 0 0 0 0 0 5 0 0 1 1 0 2 0 0 2 0 0 14 0 1569.9494 P43246 P43246 431 444 MSH2 DNA mismatch repair protein Msh2 yes yes 2 2.1638E-07 169.93 By MS/MS 2 0 1 1 5425600 0 0 5425600 8331 813 8672 35666 29927 29927 1 0 0 1226100 LLLDIPLQTPHK ELAEEFKQKFEECQRLLLDIPLQTPHKLVD CQRLLLDIPLQTPHKLVDTGRAAKLIQRAE R L L H K L 0 0 0 1 0 1 0 0 1 1 4 1 0 0 2 0 1 0 0 0 0 0 12 0 1386.8235 A6NKT7;O14715;P0DJD0;P0DJD1;Q99666;P49792 P49792 2145 2156 RGPD3;RGPD8;RGPD1;RGPD2;RGPD5;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;E3 SUMO-protein ligase RanBP2 no no 3 0.0015652 96.64 By matching By MS/MS By MS/MS 1 0 3 1 1 1 9559300 417150 2633900 6508200 8332 871;17 8673 35667;35668;35669 29928;29929 29929 2 417150 1287400 1402300 LLLDNTQIMNALQK ERTSVNAQREYQLMKLLLDNTQIMNALQKY KLLLDNTQIMNALQKYPNCPTDVRQWATSS K L L Q K Y 1 0 2 1 0 2 0 0 0 1 4 1 1 0 0 0 1 0 0 0 0 0 14 0 1613.8811 CON__Q2YDI2;O43929 CON__Q2YDI2 404 417 ORC4 Origin recognition complex subunit 4 yes no 2 2.9698E-05 161.63 By MS/MS 5 0 1 1 7296200 0 0 7296200 + 8333 79 8674 35670 29930 29930 1 0 0 1017700 LLLDQEQK DRAQKAFEAVDKAYKLLLDQEQKKRALDVI AVDKAYKLLLDQEQKKRALDVIQAGKEYVE K L L Q K K 0 0 0 1 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 985.54441 O75937 O75937 109 116 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2 0.00016293 142.64 By matching By MS/MS 6.33 0.471 2 1 1 2 61358000 0 8564300 52793000 8334 291 8675 35671;35672;35673 29931 29931 1 0 2964700 7983700 LLLDTFEYQGLVK TFQKRQKLTSEGAAKLLLDTFEYQGLVKHT AKLLLDTFEYQGLVKHTGGCHCGAVRFEVW K L L V K H 0 0 0 1 0 1 1 1 0 0 4 1 0 1 0 0 1 0 1 1 0 0 13 0 1537.8392 Q7Z7K6 Q7Z7K6 135 147 CENPV Centromere protein V yes yes 2 5.2147E-05 157.96 By MS/MS By MS/MS By MS/MS 4.44 1.95 1 1 1 1 1 3 1 1 1 7 161300000 750370 14134000 146410000 8335 1538 8676 35674;35675;35676;35677;35678;35679;35680;35681;35682 29932;29933;29934;29935;29936;29937 29934 6 999130 4892600 22429000 LLLEEIYR GAAVLPEDLGRNCARLLLEEIYRGGCVDST LGRNCARLLLEEIYRGGCVDSTNQSLALLL R L L Y R G 0 1 0 0 0 0 2 0 0 1 3 0 0 0 0 0 0 0 1 0 0 0 8 0 1047.5964 Q9Y2P8 Q9Y2P8 282 289 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 6.7288E-18 148.07 By MS/MS 6 0 1 1 0 0 0 0 8336 2243 8677 35683 29938 29938 1 0 0 0 LLLEQILNK LPHVFVNCVECFTLRLLLEQILNKLNHLSS ECFTLRLLLEQILNKLNHLSSSEDGCSTEI R L L N K L 0 0 1 0 0 1 1 0 0 1 4 1 0 0 0 0 0 0 0 0 0 0 9 0 1082.6699 O43913 O43913 71 79 ORC5 Origin recognition complex subunit 5 yes yes 2 0.00033253 138.83 By matching By MS/MS By MS/MS 4.5 0.5 2 2 1 1 2 23923000 5966800 2701400 15255000 8337 218 8678 35684;35685;35686;35687 29939;29940 29940 2 4655100 696330 2228600 LLLETHLPSK NANAVSEGVVHEDLRLLLETHLPSKKKKVL HEDLRLLLETHLPSKKKKVLLGVGDPKIGA R L L S K K 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 1 1 0 0 0 0 0 10 0 1149.6758 O00567 O00567 78 87 NOP56 Nucleolar protein 56 yes yes 2 0.0092928 89.08 By MS/MS By MS/MS 6.5 3.5 1 1 1 1 19043000 0 15401000 3642500 8338 130 8679 35688;35689 29941;29942 29941 2 0 6565400 7966500 LLLETHLPSKK NANAVSEGVVHEDLRLLLETHLPSKKKKVL EDLRLLLETHLPSKKKKVLLGVGDPKIGAA R L L K K K 0 0 0 0 0 0 1 0 1 0 4 2 0 0 1 1 1 0 0 0 0 0 11 1 1277.7707 O00567 O00567 78 88 NOP56 Nucleolar protein 56 yes yes 3 0.0043136 81.525 By MS/MS By MS/MS 3.7 1.55 1 1 3 2 1 2 4 6 119910000 0 38703000 81203000 8339 130 8680 35690;35691;35692;35693;35694;35695;35696;35697;35698;35699 29943;29944;29945;29946;29947 29946 5 0 15230000 15298000 LLLFSPSVVR IWASCFFALSLQKPRLLLFSPSVVRIGVPL LQKPRLLLFSPSVVRIGVPLSVAVKLQDAP R L L V R I 0 1 0 0 0 0 0 0 0 0 3 0 0 1 1 2 0 0 0 2 0 0 10 0 1129.6859 CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 23 32 yes no 2 0.00021517 141.39 By MS/MS By MS/MS By MS/MS 5.9 3.24 1 3 1 1 1 3 4 2 4 37188000 12629000 4478200 20081000 + 8340 25 8681 35700;35701;35702;35703;35704;35705;35706;35707;35708;35709 29948;29949;29950;29951;29952;29953;29954 29948 7 16379000 13897000 8801300 LLLFSSATDAAIR PGVVHLVAFHPDPTRLLLFSSATDAAIRVW TRLLLFSSATDAAIRVWSLQDRSCLAVLTA R L L I R V 3 1 0 1 0 0 0 0 0 1 3 0 0 1 0 2 1 0 0 0 0 0 13 0 1376.7664 Q12788 Q12788 166 178 TBL3 Transducin beta-like protein 3 yes yes 2 0.0010621 113.93 By MS/MS 3 0 1 1 3904300 0 3904300 0 8341 1197 8682 35710 29955 29955 1 0 1664400 0 LLLGAGAVAYGVR GRLPAGPRGMGTALKLLLGAGAVAYGVRES LKLLLGAGAVAYGVRESVFTVEGGHRAIFF K L L V R E 3 1 0 0 0 0 0 3 0 0 3 0 0 0 0 0 0 0 1 2 0 0 13 0 1258.7398 Q99623 Q99623 25 37 PHB2 Prohibitin-2 yes yes 2 3.9029E-07 164.57 By matching By MS/MS 6 0 2 1 1 23192000 3305000 0 19887000 8342 1855 8683 35711;35712 29956 29956 1 4400600 0 2975400 LLLHLEELQMEHDIR LETALKWRNYEVKLRLLLHLEELQMEHDIR LLLHLEELQMEHDIRHYDLESVPMTWDPVD R L L I R H 0 1 0 1 0 1 3 0 2 1 5 0 1 0 0 0 0 0 0 0 0 0 15 0 1887.9877 Q9HCE1 Q9HCE1 342 356 MOV10 Putative helicase MOV-10 yes yes 4 0.00010906 102.5 By MS/MS 2 0 1 1 4754500 0 0 4754500 8343 2011 8684 35713 29957 29957 1 0 0 1074400 LLLIDWPELK SDFIRVQLISGPPAKLLLIDWPELKESIPV GPPAKLLLIDWPELKESIPVINGRDLQNPI K L L L K E 0 0 0 1 0 0 1 0 0 1 4 1 0 0 1 0 0 1 0 0 0 0 10 0 1238.7275 A6NHR9 A6NHR9 1257 1266 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.035114 76.679 By MS/MS 2 0.816 1 1 1 3 26125000 0 0 26125000 8344 15 8685 35714;35715;35716 29958 29958 1 0 0 5603400 LLLIGDSGVGK ______________________________ LLFKLLLIGDSGVGKTCVLFRFSDDAFNTT K L L G K T 0 0 0 1 0 0 0 3 0 1 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1070.6336 P62820;Q9H0U4;Q92928;P59190;P61026 P61026 12 22 RAB1A;RAB1B;RAB1C;RAB15;RAB10 Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C;Ras-related protein Rab-15;Ras-related protein Rab-10 no no 2 0.0027077 107.15 By MS/MS By MS/MS 8.29 1.75 2 1 1 3 2 5 93933000 0 5463300 88470000 8345 1034;976 8686 35717;35718;35719;35720;35721;35722;35723 29959;29960;29961;29962 29961 4 0 25429000 53106000 LLLINNAGSLGDVSK LGALRELPRPKGLQRLLLINNAGSLGDVSK LLLINNAGSLGDVSKGFVDLSDSTQVNNYW R L L S K G 1 0 2 1 0 0 0 2 0 1 4 1 0 0 0 2 0 0 0 1 0 0 15 0 1512.8512 P35270 P35270 95 109 SPR Sepiapterin reductase yes yes 2 0.0016701 93.345 By MS/MS By matching 7 0 2 1 1 4154600 0 1110700 3043900 8346 749 8687 35724;35725 29963 29963 1 0 637750 540120 LLLIQAFRPDR SEETPATPIGQAIHRLLLIQAFRPDRLLAM AIHRLLLIQAFRPDRLLAMAHMFVSTNLGE R L L D R L 1 2 0 1 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 11 1 1340.7929 Q14204 Q14204 3990 4000 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0022194 91.855 By MS/MS 1 0 1 1 2833100 0 0 2833100 8347 1292 8688 35726 29964 29964 1 0 0 610430 LLLLDTQQEAGMLLR KKLSKAVEKRFPHDKLLLLDTQQEAGMLLR LLLLDTQQEAGMLLRQLANQKQQHLAFRDR K L L L R Q 1 1 0 1 0 2 1 1 0 0 6 0 1 0 0 0 1 0 0 0 0 0 15 0 1712.9495 Q2NL82 Q2NL82 220 234 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 1.4716E-25 204.5 By MS/MS By matching 2.5 0.5 1 1 1 1 6175000 0 4632200 1542800 8348 1406 8689 35727;35728 29965 29965 1 0 2086000 299240 LLLLESVSGLLQPR GTGGLSAVSSGPRLRLLLLESVSGLLQPRT RLLLLESVSGLLQPRTGSAVAPVHPPNRSA R L L P R T 0 1 0 0 0 1 1 1 0 0 6 0 0 0 1 2 0 0 0 1 0 0 14 0 1536.9239 Q8IZL8 Q8IZL8 35 48 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2;3 1.6738E-07 170.99 By MS/MS By MS/MS 2 0.707 2 4 2 2 6 35219000 0 3400600 31818000 8349 1596 8690 35729;35730;35731;35732;35733;35734;35735;35736 29966;29967;29968;29969;29970;29971;29972 29970 6 0 1531300 6958900 LLLLGAGESGK KNLREDGEKAAREVKLLLLGAGESGKSTIV REVKLLLLGAGESGKSTIVKQMKIIHEDGY K L L G K S 1 0 0 0 0 0 1 3 0 0 4 1 0 0 0 1 0 0 0 0 0 0 11 0 1056.6179 P63092;Q5JWF2;P11488;P63096;P19087;P09471;A8MTJ3;P38405;P04899;P08754 P04899 36 46 GNAS;GNAT1;GNAI1;GNAT2;GNAO1;GNAT3;GNAL;GNAI2;GNAI3 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(i) subunit alpha-1;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha no no 2 0.024043 81.95 By matching By MS/MS By MS/MS 8 2 2 2 1 1 2 15239000 693310 5338100 9207500 8350 1058;421;478 8691 35737;35738;35739;35740 29973;29974 29974 2 1263100 1847900 7285100 LLLLSSVR LAMHLWRAVVRHKNRLLLLSSVRPAIIPTE VVRHKNRLLLLSSVRPAIIPTEEQQQQQEE R L L V R P 0 1 0 0 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0 1 0 0 8 0 899.5804 P03246;P03247 P03246 133 140 yes no 2 0.0010971 120.52 By matching By MS/MS 8 0 2 1 1 11832000 0 1479800 10352000 8351 407 8692 35741;35742 29975 29975 1 0 673240 1587100 LLLLSSVRPAIIPTEEQQQQQEEAR LAMHLWRAVVRHKNRLLLLSSVRPAIIPTE IIPTEEQQQQQEEARRRRQEQSPWNPRAGL R L L A R R 2 2 0 0 0 5 4 0 0 2 4 0 0 0 2 2 1 0 0 1 0 0 25 1 2875.5403 P03246 P03246 133 157 yes yes 3 1.5263E-181 290.56 By matching By MS/MS 8 0 2 1 1 21677000 0 2612200 19065000 8352 407 8693 35743;35744 29976 29976 1 0 1188400 2922900 LLLNLAENPAMTR LFSAGNEETKLQVLKLLLNLAENPAMTREL LKLLLNLAENPAMTRELLRAQVPSSLGSLF K L L T R E 2 1 2 0 0 0 1 0 0 0 4 0 1 0 1 0 1 0 0 0 0 0 13 0 1454.7915 Q9UH62 Q9UH62 266 278 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 2 0.00043027 123.42 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 21105000 0 4253900 16851000 8353 2147 8694 35745;35746 29977;29978 29978 2 0 1472600 2350400 LLLNLELQK LWDFLRQMVAARRERLLLNLELQKVFQDLL AARRERLLLNLELQKVFQDLLYLMDWMEEM R L L Q K V 0 0 1 0 0 1 1 0 0 0 5 1 0 0 0 0 0 0 0 0 0 0 9 0 1082.6699 O15020 O15020 527 535 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.0082004 91.318 By MS/MS 1 0 1 1 2706400 0 0 2706400 8354 160 8695 35747 29979 29979 1 0 0 583130 LLLNLISQVGR WIPQLLTCLVGSEGKLLLNLISQVGRVYPQ SEGKLLLNLISQVGRVYPQAVYFPIRTLYL K L L G R V 0 1 1 0 0 1 0 1 0 1 4 0 0 0 0 1 0 0 0 1 0 0 11 0 1224.7554 Q9Y4A5 Q9Y4A5 3249 3259 TRRAP Transformation/transcription domain-associated protein yes yes 2 1.0753E-09 169.44 By MS/MS 1 0 1 1 4549000 0 0 4549000 8355 2285 8696 35748 29980 29980 1 0 0 980160 LLLNNDNLLR HAPPGEFNEVFNDVRLLLNNDNLLREGAAH FNDVRLLLNNDNLLREGAAHAFAQYNMDQF R L L L R E 0 1 3 1 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 10 0 1196.6877 P52907;P47755 P52907 38 47 CAPZA1;CAPZA2 F-actin-capping protein subunit alpha-1;F-actin-capping protein subunit alpha-2 no no 2 0.00029612 123.72 By MS/MS By matching 7.75 2.28 1 1 2 3 1 94459000 0 93947000 512390 8356 914;836 8697 35749;35750;35751;35752 29981;29982 29982 2 0 60620000 1120600 LLLPDSLTTWEIHGVSLSK WLWKVEEVDRFSQLRLLLPDSLTTWEIHGV DSLTTWEIHGVSLSKTTGLCVATPARLRVF R L L S K T 0 0 0 1 0 0 1 1 1 1 5 1 0 0 1 3 2 1 0 1 0 0 19 0 2108.1518 CON__ENSEMBL:ENSBTAP00000007350 CON__ENSEMBL:ENSBTAP00000007350 796 814 yes yes 3 0.0026682 58.073 By matching By MS/MS 8 0 2 1 1 10414000 1294000 0 9120400 + 8357 25 8698 35753;35754 29983 29983 1 1111000 0 1398200 LLLPGELAK KRSTITSREIQTAVRLLLPGELAKHAVSEG IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R L L A K H 1 0 0 0 0 0 1 1 0 0 4 1 0 0 1 0 0 0 0 0 0 0 9 0 952.59572 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814;Q8N257 P06899 101 109 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 2 0.0065334 94.302 By MS/MS By MS/MS By MS/MS 6.13 2.86 3 2 2 2 2 3 3 6 4 3 4 13 13 30760000000 534810000 11930000000 18295000000 8358 451;644;953;1601 8699 35755;35756;35757;35758;35759;35760;35761;35762;35763;35764;35765;35766;35767;35768;35769;35770;35771;35772;35773;35774;35775;35776;35777;35778;35779;35780;35781;35782;35783;35784 29984;29985;29986;29987;29988;29989;29990;29991;29992;29993;29994;29995;29996;29997;29998;29999;30000;30001;30002;30003;30004;30005;30006;30007;30008;30009;30010;30011;30012;30013;30014;30015;30016;30017;30018;30019;30020;30021;30022;30023;30024;30025;30026;30027;30028;30029;30030;30031;30032;30033;30034;30035;30036;30037;30038;30039;30040;30041;30042;30043;30044;30045;30046;30047 29984 64 449840000 8914600000 5706900000 LLLPGELAKHAVSEGTK KRSTITSREIQTAVRLLLPGELAKHAVSEG LPGELAKHAVSEGTKAVTKYTSAK______ R L L T K A 2 0 0 0 0 0 2 2 1 0 4 2 0 0 1 1 1 0 0 1 0 0 17 1 1761.9989 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814;Q8N257 P06899 101 117 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 2;3;4 1.5106E-06 148.89 By MS/MS By MS/MS 7.76 1.06 2 5 6 3 1 6 11 1436700000 0 233500000 1203200000 8359 451;644;953;1601 8700 35785;35786;35787;35788;35789;35790;35791;35792;35793;35794;35795;35796;35797;35798;35799;35800;35801 30048;30049;30050;30051;30052;30053;30054;30055;30056;30057;30058;30059;30060;30061;30062;30063;30064;30065;30066 30063 19 0 119100000 206790000 LLLPLFR CALDCGAGIGRITKRLLLPLFREVDMVDIT GIGRITKRLLLPLFREVDMVDITEDFLVQA R L L F R E 0 1 0 0 0 0 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 7 0 870.56911 Q9BV86 Q9BV86 79 85 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes yes 2 0.0029862 130.84 By MS/MS By MS/MS 8 1.22 2 1 1 1 3 14428000 0 3583700 10845000 8360 1912 8701 35802;35803;35804;35805 30067;30068 30068 2 0 2057800 2181600 LLLPVAEYFSGVQLPPHLSPFVTEK CYVQPQWVFDSVNARLLLPVAEYFSGVQLP GVQLPPHLSPFVTEKEGDYVPPEKLKLLAL R L L E K E 1 0 0 0 0 1 2 1 1 0 5 1 0 2 4 2 1 0 1 3 0 0 25 0 2780.5153 O00541 O00541 406 430 PES1 Pescadillo homolog yes yes 3 4.6279E-12 89.946 By MS/MS 3 0 2 2 62572000 0 0 62572000 8361 127 8702 35806;35807 30069;30070;30071 30070 3 0 0 12136000 LLLPWLEAR TDELVAEVEKRNRLKLLLPWLEARIHEGCE KRNRLKLLLPWLEARIHEGCEEPATHNALA K L L A R I 1 1 0 0 0 0 1 0 0 0 4 0 0 0 1 0 0 1 0 0 0 0 9 0 1109.6597 Q00610 Q00610 857 865 CLTC Clathrin heavy chain 1 yes yes 2 8.5701E-09 163.77 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 179090000 0 33061000 146030000 8362 1125 8703 35808;35809;35810;35811;35812;35813;35814 30072;30073;30074;30075;30076;30077;30078;30079 30075 8 0 15300000 31677000 LLLQGEADQSLLTFIDK YQETYLPYMIRSKLKLLLQGEADQSLLTFI LQGEADQSLLTFIDKAMHGELQKAILELHY K L L D K A 1 0 0 2 0 2 1 1 0 1 5 1 0 1 0 1 1 0 0 0 0 0 17 0 1903.0302 P78527 P78527 3051 3067 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.0665E-06 154.07 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 14719000 0 947190 13772000 8363 1089 8704 35815;35816;35817 30080;30081;30082 30081 3 0 462970 2974600 LLLQNTDR TIGLLFWDGPGKGLRLLLQNTDRFSSHVSG GPGKGLRLLLQNTDRFSSHVSGTLGQFYQD R L L D R F 0 1 1 1 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 8 0 971.53999 CON__Q3T052 CON__Q3T052 845 852 yes yes 2 0.011045 92.47 By MS/MS By matching 3.6 2.42 1 2 1 1 4 1 21369000 18290000 3079600 0 + 8364 85 8705 35818;35819;35820;35821;35822 30083;30084 30084 2 31007000 1386800 0 LLLQQSIGETNVER RTAELKKALKEKENRLLLQQSIGETNVERK RLLLQQSIGETNVERKAKKKRSKSVTSSSS R L L E R K 0 1 1 0 0 2 2 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 14 0 1598.8628 Q8TBK6 Q8TBK6 85 98 ZCCHC10 Zinc finger CCHC domain-containing protein 10 yes yes 2 3.8627E-13 185.18 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 26188000 0 3218200 22970000 8365 1658 8706 35823;35824;35825 30085;30086;30087 30087 2 0 1847900 3984400 LLLQQVSLPELPGEYSMK SGTFSSKFQVDNNNRLLLQQVSLPELPGEY QQVSLPELPGEYSMKVTGEGCVYLQTSLKY R L L M K V 0 0 0 0 0 2 2 1 0 0 5 1 1 0 2 2 0 0 1 1 0 0 18 0 2044.0915 P01023 P01023 1298 1315 A2M Alpha-2-macroglobulin yes yes 2;3 1.3471E-08 131.69 By MS/MS 7 2.83 1 2 3 7817800 7817800 0 0 8366 370 8707 35826;35827;35828 30088;30089;30090 30089 3 5220000 0 0 LLLQVQHASK AAISKTAVAPIERVKLLLQVQHASKQITAD IERVKLLLQVQHASKQITADKQYKGIIDCV K L L S K Q 1 0 0 0 0 2 0 0 1 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1135.6713 P05141;P12235;P12236 P05141 34 43 SLC25A5;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.00051448 133.57 By MS/MS By MS/MS 6.71 2.81 1 2 2 2 3 4 131080000 0 28909000 102180000 8367 427;533;534 8708 35829;35830;35831;35832;35833;35834;35835 30091;30092;30093;30094;30095;30096;30097 30091 7 0 14648000 25743000 LLLSATSGEK LHNLPKAVDDKQLRKLLLSATSGEKGVRIK KQLRKLLLSATSGEKGVRIKECRVMRDLKG K L L E K G 1 0 0 0 0 0 1 1 0 0 3 1 0 0 0 2 1 0 0 0 0 0 10 0 1017.5706 Q9NW13 Q9NW13 506 515 RBM28 RNA-binding protein 28 yes yes 2 0.020643 82.645 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 22113000 0 5408400 16705000 8368 2075 8709 35836;35837;35838 30098;30099;30100 30100 2 0 2435500 3386000 LLLSDMWSSK LCRSSASPKAAEAARLLLSDMWSSKELQGV AEAARLLLSDMWSSKELQGVLRQQGFDRNM R L L S K E 0 0 0 1 0 0 0 0 0 0 3 1 1 0 0 3 0 1 0 0 0 0 10 0 1178.6005 Q13835 Q13835 706 715 PKP1 Plakophilin-1 yes yes 2 0.070532 61.65 By MS/MS 1 0 1 1 1078800 1078800 0 0 8369 1270 8710 35839 30101 30101 0 1078800 0 0 LLLSGTADGADLRTVDPETQAR DQDDLENPMLETASKLLLSGTADGADLRTV DGADLRTVDPETQARLEALLEAAGIGKLST K L L A R L 3 2 0 3 0 1 1 2 0 0 4 0 0 0 1 1 3 0 0 1 0 0 22 1 2298.1816 O75179 O75179 153 174 ANKRD17 Ankyrin repeat domain-containing protein 17 yes yes 3 0.010558 42.64 By MS/MS 3 0 1 1 7131300 7131300 0 0 8370 246 8711 35840 30102 30102 1 8227900 0 0 LLLSTVVGLFTAPGLHLK QGLLVAQGGASSQARLLLSTVVGLFTAPGL STVVGLFTAPGLHLKQPFVQSLSSFAPITL R L L L K Q 1 0 0 0 0 0 0 2 1 0 6 1 0 1 1 1 2 0 0 2 0 0 18 0 1878.1343 CON__Q3SZH5 CON__Q3SZH5 193 210 yes yes 3 0.0038346 58.246 By MS/MS 4 0 1 1 2135600 0 0 2135600 + 8371 84 8712 35841 30103 30103 1 0 0 348810 LLLTGTPLQNK KLTQVLNTHYVAPRRLLLTGTPLQNKLPEL APRRLLLTGTPLQNKLPELWALLNFLLPTI R L L N K L 0 0 1 0 0 1 0 1 0 0 4 1 0 0 1 0 2 0 0 0 0 0 11 0 1196.7129 P51532 P51532 907 917 SMARCA4 Transcription activator BRG1 yes yes 2 0.00032718 130.75 By matching By MS/MS By MS/MS 1.29 0.452 5 2 1 2 4 40350000 872270 7930100 31548000 8372 894 8713 35842;35843;35844;35845;35846;35847;35848 30104;30105;30106;30107 30107 4 872270 3876100 6859200 LLLTLPLLR RAGPGGGAERRRAGRLLLTLPLLRQTAGKV RRRAGRLLLTLPLLRQTAGKVLAHFYGVKL R L L L R Q 0 1 0 0 0 0 0 0 0 0 6 0 0 0 1 0 1 0 0 0 0 0 9 0 1050.7165 P11474;O95718 P11474 381 389 ESRRA;ESRRB Steroid hormone receptor ERR1;Steroid hormone receptor ERR2 yes no 2 2.9902E-07 158.03 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 15793000 0 7868400 7924400 8373 526 8714 35849;35850;35851;35852 30108;30109;30110 30109 3 0 2064400 1127800 LLLTPWVK LSAVSGEDTQDRTDRLLLTPWVKFLWESYR TQDRTDRLLLTPWVKFLWESYRQCLDLLRN R L L V K F 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 0 1 1 0 1 0 0 8 0 968.60589 Q14152 Q14152 144 151 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.026661 79.116 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 7366700 577690 3092800 3696300 8374 1286 8715 35853;35854;35855;35856;35857 30111;30112 30111 2 577690 1438200 777980 LLLTTQFPFK QSLSCKEHLTTVLDKLLLTTQFPFKINEKV TVLDKLLLTTQFPFKINEKVLQVLTNIFLY K L L F K I 0 0 0 0 0 1 0 0 0 0 3 1 0 2 1 0 2 0 0 0 0 0 10 0 1206.7012 Q9UBD5 Q9UBD5 292 301 ORC3 Origin recognition complex subunit 3 yes yes 2 0.020983 82.452 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 9764600 0 2799100 6965500 8375 2130 8716 35858;35859;35860 30113;30114 30113 2 0 1193200 1311700 LLLWSQR IQVSGQSEDMTAKEKLLLWSQRMVEGYQGL EDMTAKEKLLLWSQRMVEGYQGLRCDNFTS K L L Q R M 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 7 0 914.53379 Q15149 Q15149 301 307 PLEC Plectin yes yes 2 0.0026964 144.29 By matching By MS/MS By MS/MS 1 0 3 1 1 1 18026000 1081800 8074900 8869100 8376 1348 8717 35861;35862;35863 30115;30116 30116 2 1081800 3946900 1911000 LLMLYTR EPGDPPCLRRLNFVRLLMLYTRKFESTDPR LRRLNFVRLLMLYTRKFESTDPREALQYFY R L L T R K 0 1 0 0 0 0 0 0 0 0 3 0 1 0 0 0 1 0 1 0 0 0 7 0 908.51536 Q8N1F7 Q8N1F7 531 537 NUP93 Nuclear pore complex protein Nup93 yes yes 2 0.037967 85.359 By MS/MS 3 0 1 1 7225200 0 0 7225200 8377 1599 8718 35864 30117 30117 1 0 0 1401300 LLMMAGIDDCYTSAR APRGTGIVSAPVPKKLLMMAGIDDCYTSAR LLMMAGIDDCYTSARGCTATLGNFAKATFD K L L A R G 2 1 0 2 1 0 0 1 0 1 2 0 2 0 0 1 1 0 1 0 0 0 15 0 1715.7681 P15880 P15880 213 227 RPS2 40S ribosomal protein S2 yes yes 2 0.00023054 150.09 By MS/MS 6 0 1 1 16517000 0 0 16517000 8378 571 8719 35865 30118 30118 1 0 0 2471100 LLMSDIVFMR LRAPEGAFRASFEDKLLMSDIVFMRTWYPV SFEDKLLMSDIVFMRTWYPVSIPAFYNPVT K L L M R T 0 1 0 1 0 0 0 0 0 1 2 0 2 1 0 1 0 0 0 1 0 0 10 0 1223.6406 Q14692 Q14692 1090 1099 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 1.0181E-05 152.63 By MS/MS 2.5 1.12 1 1 1 1 4 13197000 0 0 13197000 8379 1315 8720 35866;35867;35868;35869 30119;30120 30120 2 0 0 2744700 LLMSEDYFTQAMEVK QNIVFNAETYSNLIKLLMSEDYFTQAMEVK LLMSEDYFTQAMEVKAFAETHIKGFTLNDA K L L V K A 1 0 0 1 0 1 2 0 0 0 2 1 2 1 0 1 1 0 1 1 0 0 15 0 1803.8423 P42704 P42704 1076 1090 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 1.5118E-07 92.925 By MS/MS 2 0 1 1 0 0 0 0 8380 808 8721 35870 30121 30121 1 0 0 0 LLNDEDPVVVTK DDAELATRALPELTKLLNDEDPVVVTKAAM LTKLLNDEDPVVVTKAAMIVNQLSKKEASR K L L T K A 0 0 1 2 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 3 0 0 12 0 1340.7187 P14923 P14923 150 161 JUP Junction plakoglobin yes yes 2 0.00073941 121.08 By MS/MS By MS/MS 6 2.75 1 1 1 2 1 1 1 1 6 3 93659000 77982000 0 15678000 8381 567 8722 35871;35872;35873;35874;35875;35876;35877;35878;35879 30122;30123;30124;30125;30126 30125 5 63800000 0 7901600 LLNFLMK ATPTGVPKDEVLANRLLNFLMKHVFHPKRA KDEVLANRLLNFLMKHVFHPKRAVFRHNLE R L L M K H 0 0 1 0 0 0 0 0 0 0 3 1 1 1 0 0 0 0 0 0 0 0 7 0 877.50955 P78527 P78527 2215 2221 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.033224 89.903 By matching By MS/MS By MS/MS 1 0 3 1 1 1 19109000 982390 3552500 14575000 8382 1089 8723 35880;35881;35882 30127;30128 30128 2 982390 1736400 3140300 LLNILGLIFK EPFSHIDPEESEETRLLNILGLIFKGPAAS SEETRLLNILGLIFKGPAASTQEKNPREST R L L F K G 0 0 1 0 0 0 0 1 0 2 4 1 0 1 0 0 0 0 0 0 0 0 10 0 1142.7427 Q15021 Q15021 562 571 NCAPD2 Condensin complex subunit 1 yes yes 2 1.4434E-08 163.77 By MS/MS 2 0.816 1 1 1 3 10271000 0 0 10271000 8383 1332 8724 35883;35884;35885 30129 30129 1 0 0 2241600 LLNILMQLR DIDILNSAGKMDKMRLLNILMQLRKCCNHP KMDKMRLLNILMQLRKCCNHPYLFDGAEPG R L L L R K 0 1 1 0 0 1 0 0 0 1 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1112.674 O60264;P28370 O60264 446 454 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 3.1906E-25 195.85 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 80731000 0 9013400 71718000 8384 223;693 8725;8726 35886;35887;35888;35889;35890;35891 30130;30131;30132;30133;30134 30132 91 5 0 4077800 15962000 LLNIWQER VAREADEGCKKPLERLLNIWQERSVYGGEF CKKPLERLLNIWQERSVYGGEFIQQLKLSM R L L E R S 0 1 1 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 0 0 0 0 8 0 1070.5873 Q9NQG5 Q9NQG5 107 114 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 0.00084705 124.08 By MS/MS By MS/MS 6 0 2 1 1 11862000 0 2208800 9653300 8385 2033 8727 35892;35893 30135;30136 30135 2 0 764620 1444200 LLNIYGR YTFIGEVVVSVNPYKLLNIYGRDTIEQYKG VVSVNPYKLLNIYGRDTIEQYKGRELYERP K L L G R D 0 1 1 0 0 0 0 1 0 1 2 0 0 0 0 0 0 0 1 0 0 0 7 0 847.49159 O94832 O94832 54 60 MYO1D Unconventional myosin-Id yes yes 2 0.066979 95.9 By MS/MS By MS/MS 2 0 2 1 1 0 0 0 0 8386 299 8728 35894;35895 30137;30138 30137 2 0 0 0 LLNNAFEELVAFQR NVNDLRRKNEKRANRLLNNAFEELVAFQRA RLLNNAFEELVAFQRALKDFVASIDATYAK R L L Q R A 2 1 2 0 0 1 2 0 0 0 3 0 0 2 0 0 0 0 0 1 0 0 14 0 1662.873 P25205 P25205 65 78 MCM3 DNA replication licensing factor MCM3 yes yes 2 2.5642E-11 178.08 By MS/MS 2 0 1 1 2173500 0 2173500 0 8387 655 8729 35896 30139 30139 1 0 978770 0 LLNQPNQWPLVK QNSVRLNYGIPAIVKLLNQPNQWPLVKATI IVKLLNQPNQWPLVKATIGLIRNLALCPAN K L L V K A 0 0 2 0 0 2 0 0 0 0 3 1 0 0 2 0 0 1 0 1 0 0 12 0 1448.814 P14923 P14923 488 499 JUP Junction plakoglobin yes yes 2 3.999E-05 148.52 By MS/MS By matching By matching 4.85 3.08 2 2 2 1 2 1 1 2 6 4 3 67187000 49285000 8329500 9572700 8388 567 8730 35897;35898;35899;35900;35901;35902;35903;35904;35905;35906;35907;35908;35909 30140;30141;30142;30143;30144;30145;30146;30147 30141 8 55747000 3565000 6876900 LLNTFLER QSIYGGRVDNEFDQRLLNTFLERLFTTRSF DNEFDQRLLNTFLERLFTTRSFDSEFKLAC R L L E R L 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1004.5655 Q14204 Q14204 4264 4271 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 9.0798E-09 165.11 By MS/MS 1 0 1 1 5027100 0 5027100 0 8389 1292 8731 35910 30148 30148 1 0 2457200 0 LLNVWQVR GITGLYFLSGAVHDRLLNVWQVRSENKEKS SGAVHDRLLNVWQVRSENKEKSAVMSFTVT R L L V R S 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 8 0 1026.5974 Q15061 Q15061 245 252 WDR43 WD repeat-containing protein 43 yes yes 2 7.2987E-06 155.19 By matching By MS/MS By MS/MS 2.83 0.687 2 3 1 1 2 3 100580000 2861900 42199000 55523000 8390 1343 8732 35911;35912;35913;35914;35915;35916 30149;30150;30151;30152 30150 4 3302000 18135000 10906000 LLNYAPLEK CCRRMLLAHVDLIEKLLNYAPLEK______ VDLIEKLLNYAPLEK_______________ K L L E K - 1 0 1 0 0 0 1 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 9 0 1059.5964 P62875 P62875 59 67 POLR2L DNA-directed RNA polymerases I, II, and III subunit RPABC5 yes yes 2 0.00063974 128.69 By MS/MS By MS/MS 10 0 2 1 1 104770000 0 25372000 79402000 8391 1044 8733 35917;35918 30153;30154 30153 2 0 128360000 173660000 LLPDTINSINLDR KFSELVMKCLWRMVRLLPDTINSINLDRIL VRLLPDTINSINLDRILLDIHIFMKVFPKE R L L D R I 0 1 2 2 0 0 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 13 0 1482.8042 Q14008 Q14008 1719 1731 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00032408 141.95 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 93071000 0 26410000 66661000 8392 1279 8734 35919;35920;35921;35922 30155;30156 30156 2 0 12909000 14322000 LLPEKLTIYTTLVGLLNAR NYKSKILRLLCTVARLLPEKLTIYTTLVGL KLTIYTTLVGLLNARNYNFGGEFVEAMIRQ R L L A R N 1 1 1 0 0 0 1 1 0 1 6 1 0 0 1 0 3 0 1 1 0 0 19 1 2127.2667 Q09161 Q09161 78 96 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 3 2.9164E-05 97.32 By MS/MS 3 0 1 1 6326200 0 0 6326200 8393 1189 8735 35923 30157 30157 1 0 0 1227000 LLPEQLIK ASTEGVAIQGQQGTRLLPEQLIKEAFILSD QGQQGTRLLPEQLIKEAFILSDLFDIGELA R L L I K E 0 0 0 0 0 1 1 0 0 1 3 1 0 0 1 0 0 0 0 0 0 0 8 0 952.59572 Q92621 Q92621 85 92 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0055774 99.139 By matching By MS/MS 1 0 2 1 1 11164000 729300 0 10435000 8394 1714 8736 35924;35925 30158 30158 1 729300 0 2248400 LLPHATEVSQK LKEEIRKELEDLRARLLPHATEVSQKIGDN LRARLLPHATEVSQKIGDNVRELQQRLGPY R L L Q K I 1 0 0 0 0 1 1 0 1 0 2 1 0 0 1 1 1 0 0 1 0 0 11 0 1221.6717 CON__Q32PJ2 CON__Q32PJ2 113 123 yes yes 2;3 0.0014425 95.362 By MS/MS By MS/MS 7.4 1.96 3 1 1 1 2 2 6 4 129600000 81995000 0 47607000 + 8395 81 8737 35926;35927;35928;35929;35930;35931;35932;35933;35934;35935 30159;30160;30161;30162;30163;30164;30165;30166 30159 7 104010000 0 15995000 LLPHQLYGVVPQA FVRPRWIYSCNEKQKLLPHQLYGVVPQA__ QKLLPHQLYGVVPQA_______________ K L L Q A - 1 0 0 0 0 2 0 1 1 0 3 0 0 0 2 0 0 0 1 2 0 0 13 0 1433.8031 P18887 P18887 621 633 XRCC1 DNA repair protein XRCC1 yes yes 2 0.030545 74.92 By matching By MS/MS By MS/MS 4 1.1 2 2 1 1 1 3 117310000 31500000 11575000 74234000 8396 603 8738 35936;35937;35938;35939;35940 30167;30168 30168 2 36344000 3841200 13548000 LLPQLTYLDGYDR CEVTNLNDYRESVFKLLPQLTYLDGYDRED FKLLPQLTYLDGYDREDQEAPDSDAEVDGV K L L D R E 0 1 0 2 0 1 0 1 0 0 4 0 0 0 1 0 1 0 2 0 0 0 13 0 1565.809 Q92688;P39687 Q92688 138 150 ANP32B;ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 2 1.8103E-11 180.36 By MS/MS 7 0.816 1 1 1 3 38597000 0 0 38597000 8397 1716 8739 35941;35942;35943 30169 30169 1 0 0 6001800 LLPQVLNSWSIGR ACGSRLLRFGILIGRLLPQVLNSWSIGRDS GRLLPQVLNSWSIGRDSLSPGQERPYSTVR R L L G R D 0 1 1 0 0 1 0 1 0 1 3 0 0 0 1 2 0 1 0 1 0 0 13 0 1481.8354 Q8IZL8 Q8IZL8 401 413 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 2.6962E-07 167.67 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 3 3 67415000 0 26416000 41000000 8398 1596 8740 35944;35945;35946;35947;35948;35949 30170;30171;30172;30173 30171 4 0 11885000 8947900 LLPSAPQTLPDGPLASPAR AVPAPSPEHSSPSVRLLPSAPQTLPDGPLA APQTLPDGPLASPARVPMFPVPLPPGPLEP R L L A R V 3 1 0 1 0 1 0 1 0 0 4 0 0 0 5 2 1 0 0 0 0 0 19 0 1900.0418 O15027 O15027 1949 1967 SEC16A Protein transport protein Sec16A yes yes 2 1.0634E-08 118.24 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 12132000 0 7187700 4944300 8399 161 8741 35950;35951;35952 30174;30175;30176 30174 3 0 3387300 1117300 LLPSLIGR LSSFDFFLTDARIRRLLPSLIGRHFYQRKK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R L L G R H 0 1 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 8 0 867.55419 O76021 O76021 164 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.00026491 134.66 By MS/MS By MS/MS By MS/MS 4.81 2.53 2 1 2 3 2 2 2 1 1 1 8 7 323060000 5303200 143500000 174260000 8400 295 8742 35953;35954;35955;35956;35957;35958;35959;35960;35961;35962;35963;35964;35965;35966;35967;35968 30177;30178;30179;30180;30181;30182;30183;30184;30185;30186;30187;30188;30189;30190;30191;30192;30193 30181 17 4137500 52440000 33379000 LLQAETASNSAR MAESEKSQKLEERLRLLQAETASNSARAAE RLRLLQAETASNSARAAERSSALREEVQSL R L L A R A 3 1 1 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1259.647 Q14980 Q14980 1271 1282 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 8.8011E-18 188.87 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 61534000 11436000 17235000 32863000 8401 1327 8743 35969;35970;35971 30194;30195;30196 30194 3 11436000 8424400 7080800 LLQALAQYQNHLQEQPR GRLVKDQEALMKSVKLLQALAQYQNHLQEQ QALAQYQNHLQEQPRKALVDILSEVSKATL K L L P R K 2 1 1 0 0 5 1 0 1 0 4 0 0 0 1 0 0 0 1 0 0 0 17 0 2049.0756 Q9BQG0 Q9BQG0 162 178 MYBBP1A Myb-binding protein 1A yes yes 2;3 2.2935E-48 225.63 By MS/MS By MS/MS 2.7 1.79 3 3 2 2 4 6 157310000 0 57802000 99503000 8402 1885 8744 35972;35973;35974;35975;35976;35977;35978;35979;35980;35981 30197;30198;30199;30200;30201;30202;30203;30204 30203 8 0 25930000 21632000 LLQAQGVEVPSK KSQREARARAEATLKLLQAQGVEVPSKDSL TLKLLQAQGVEVPSKDSLPKKRPIYEDKKR K L L S K D 1 0 0 0 0 2 1 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 12 0 1267.7136 O60841 O60841 425 436 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS 2 1.1 2 2 1 2 3 116780000 0 24044000 92741000 8403 236 8745 35982;35983;35984;35985;35986 30205;30206;30207;30208 30205 4 0 11216000 20387000 LLQAQGVEVPSKDSLPK KSQREARARAEATLKLLQAQGVEVPSKDSL QAQGVEVPSKDSLPKKRPIYEDKKRKKIPQ K L L P K K 1 0 0 1 0 2 1 1 0 0 3 2 0 0 2 2 0 0 0 2 0 0 17 1 1808.0044 O60841 O60841 425 441 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.015188 50.831 By MS/MS 2 0 1 1 14805000 0 14805000 0 8404 236 8746 35987 30209 30209 1 0 6666800 0 LLQAVENGDAEK FRKSDTNEWNKNDDRLLQAVENGDAEKVAS DDRLLQAVENGDAEKVASLLGKKGASATKH R L L E K V 2 0 1 1 0 1 2 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 0 1285.6514 Q9P0K7 Q9P0K7 23 34 RAI14 Ankycorbin yes yes 2 0.011687 91.658 By MS/MS 2.5 0.5 1 1 2 6446300 0 6446300 0 8405 2115 8747 35988;35989 30210 30210 1 0 2851400 0 LLQDEFPGIPSPLDAAVECHR VWVYPPEKKEKGYPKLLQDEFPGIPSPLDA PGIPSPLDAAVECHRGECQAEGVLFFQGDR K L L H R G 2 1 0 2 1 1 2 1 1 1 3 0 0 1 3 1 0 0 0 1 0 0 21 0 2363.158 P02790 P02790 131 151 HPX Hemopexin yes yes 3 0.00022164 68.552 By MS/MS 9 0 1 1 4656600 4656600 0 0 8406 401 8748 35990 30211 30211 1 2613800 0 0 LLQDFFNGK IVLVGGSTRIPKIQKLLQDFFNGKELNKSI IPKIQKLLQDFFNGKELNKSINPDEAVAYG K L L G K E 0 0 1 1 0 1 0 1 0 0 2 1 0 2 0 0 0 0 0 0 0 0 9 0 1080.5604 P54652;P11142;P17066 P11142 349 357 HSPA2;HSPA8;HSPA6 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6 no no 2 4.9396E-12 173.88 By matching By MS/MS By MS/MS 3.08 1.59 3 2 3 2 2 1 1 6 6 366560000 1128900 140880000 224560000 8407 517;930;582 8749 35991;35992;35993;35994;35995;35996;35997;35998;35999;36000;36001;36002;36003 30212;30213;30214;30215;30216;30217;30218;30219;30220;30221;30222 30213 11 1128900 59058000 42667000 LLQDFFNGKELNK IVLVGGSTRIPKIQKLLQDFFNGKELNKSI QKLLQDFFNGKELNKSINPDEAVAYGAAVQ K L L N K S 0 0 2 1 0 1 1 1 0 0 3 2 0 2 0 0 0 0 0 0 0 0 13 1 1564.8249 P54652;P11142;P17066 P11142 349 361 HSPA2;HSPA8;HSPA6 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 6 no no 3 0.011617 68.463 By MS/MS 2.5 0.5 1 1 2 4502800 0 4502800 0 8408 517;930;582 8750 36004;36005 30223;30224 30223 2 0 1977500 0 LLQDFFNGR LVLVGGSTRIPKVQKLLQDFFNGRDLNKSI IPKVQKLLQDFFNGRDLNKSINPDEAVAYG K L L G R D 0 1 1 1 0 1 0 1 0 0 2 0 0 2 0 0 0 0 0 0 0 0 9 0 1108.5665 P0DMV9;P0DMV8 P0DMV9 349 357 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 8.5701E-09 163.77 By MS/MS By MS/MS By MS/MS 4.25 2.59 2 1 3 1 2 2 1 2 7 3 278030000 25110000 110890000 142030000 8409 501 8751 36006;36007;36008;36009;36010;36011;36012;36013;36014;36015;36016;36017 30225;30226;30227;30228;30229;30230;30231;30232;30233 30227 9 28886000 53053000 27051000 LLQDFNR DKFKTLSEKNNITQKLLQDFNRFLNTTFSF EKNNITQKLLQDFNRFLNTTFSFFPPFVSC K L L N R F 0 1 1 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 904.47667 P78527 P78527 2836 2842 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0021746 146.21 By MS/MS 1 0 1 1 19902000 0 0 19902000 8410 1089 8752 36018 30234 30234 1 0 0 4288100 LLQDSVDFSLADAINTEFK RSSAVRLRSSVPGVRLLQDSVDFSLADAIN SVDFSLADAINTEFKNTRTNEKVELQELND R L L F K N 2 0 1 3 0 1 1 0 0 1 3 1 0 2 0 2 1 0 0 1 0 0 19 0 2125.0579 P08670 P08670 79 97 VIM Vimentin yes yes 2;3 8.3472E-115 264.09 By MS/MS 2.57 1.18 2 1 2 2 7 211410000 0 0 211410000 8411 476 8753 36019;36020;36021;36022;36023;36024;36025 30235;30236;30237;30238;30239;30240;30241;30242;30243 30239 9 0 0 36034000 LLQEDSSPLLR ELARQTHGILEYYCRLLQEDSSPLLRCALC YYCRLLQEDSSPLLRCALCIGGMSVKEQME R L L L R C 0 1 0 1 0 1 1 0 0 0 4 0 0 0 1 2 0 0 0 0 0 0 11 0 1269.6929 Q9UJV9 Q9UJV9 283 293 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.0010715 113.62 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 12733000 0 4373800 8359000 8412 2171 8754 36026;36027 30244;30245 30244 2 0 1864600 1365300 LLQEIVR NTRKLWSMHLHVQAKLLQEIVRSFSGTTCQ MHLHVQAKLLQEIVRSFSGTTCQPIQHMLR K L L V R S 0 1 0 0 0 1 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 7 0 869.53345 Q69YN4 Q69YN4 1157 1163 KIAA1429 Protein virilizer homolog yes yes 2 0.033493 89.673 By MS/MS 1 0 1 1 4407900 0 0 4407900 8413 1468 8755 36028 30246 30246 1 0 0 949760 LLQGRPPLDFYPPGVHPSGLVPR FDPRWMMIPPYVDPRLLQGRPPLDFYPPGV DFYPPGVHPSGLVPRERSDSGGSSSEPFDR R L L P R E 0 2 0 1 0 1 0 3 1 0 4 0 0 1 6 1 0 0 1 2 0 0 23 1 2511.375 P48634 P48634 734 756 PRRC2A Protein PRRC2A yes yes 4 0.025064 32.491 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 14506000 0 5865700 8640000 8414 844 8756 36029;36030 30247;30248 30247 2 0 2641400 1861600 LLQIIER ALKLNSNEARLKFPRLLQIIERYPEETLSL EARLKFPRLLQIIERYPEETLSLMTKEISS R L L E R Y 0 1 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 7 0 883.5491 P78527 P78527 3468 3474 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.017841 106.42 By MS/MS 1.5 0.5 1 1 2 17680000 0 0 17680000 8415 1089 8757 36031;36032 30249;30250 30250 2 0 0 3863100 LLQLGQQPR ERLRAARVQEQVRARLLQLGQQPRHNGAAE EQVRARLLQLGQQPRHNGAAEPEPEAETAR R L L P R H 0 1 0 0 0 3 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 9 0 1051.6138 Q9Y446 Q9Y446 54 62 PKP3 Plakophilin-3 yes yes 2 0.071269 66.799 By MS/MS 3 0 1 1 3802100 0 0 3802100 8416 2282 8758 36033 30251 30251 1 0 0 737430 LLQLLGR RLPVRAWADVRRESRLLQLLGRLPLFGLGR ADVRRESRLLQLLGRLPLFGLGRLVTRKSW R L L G R L 0 1 0 0 0 1 0 1 0 0 4 0 0 0 0 0 0 0 0 0 0 0 7 0 811.52797 P82930 P82930 64 70 MRPS34 28S ribosomal protein S34, mitochondrial yes yes 2 0.0088903 122.51 By matching By MS/MS 6.67 0.471 1 2 2 1 37471000 0 9542200 27929000 8417 1102 8759 36034;36035;36036 30252 30252 1 0 5364300 4955800 LLQLQEQMR EMRQMGQPCDAYQKRLLQLQEQMRALYKAI DAYQKRLLQLQEQMRALYKAISVPRVRRAS R L L M R A 0 1 0 0 0 3 1 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 9 0 1157.6227 P15924 P15924 142 150 DSP Desmoplakin yes yes 2 1.0463E-31 198.87 By MS/MS By MS/MS By MS/MS 4.95 3.56 5 3 1 2 1 2 2 4 11 4 5 248580000 130120000 56003000 62460000 8418 572 8760;8761 36037;36038;36039;36040;36041;36042;36043;36044;36045;36046;36047;36048;36049;36050;36051;36052;36053;36054;36055;36056 30253;30254;30255;30256;30257;30258;30259;30260;30261;30262;30263;30264 30259 256 11 124020000 24567000 28229000 LLQLVEDR LISVLREANQAINPKLLQLVEDRGSGRSRG NQAINPKLLQLVEDRGSGRSRGRGGMKDDR K L L D R G 0 1 0 1 0 1 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 8 0 984.5604 P17844 P17844 471 478 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 8.069E-09 166.17 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 171760000 0 64882000 106880000 8419 588 8762 36057;36058;36059;36060;36061;36062 30265;30266;30267;30268;30269 30268 5 0 22761000 19778000 LLQLWEK SFLAVEEDKQQKIARLLQLWEKNGYFDDSI DKQQKIARLLQLWEKNGYFDDSIIQQLQSP R L L E K N 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 0 1 0 0 0 0 7 0 928.5382 Q8IWX8 Q8IWX8 263 269 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 2 0.017273 107.43 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 16650000 0 5627300 11023000 8420 1577 8763 36063;36064;36065 30270;30271 30270 2 0 2534000 2411000 LLQNILDAGFQMPTPIQMQAIPVMLHGR ATFQQLDQEYKINSRLLQNILDAGFQMPTP TPIQMQAIPVMLHGRELLASAPTGSGKTLA R L L G R E 2 1 1 1 0 4 0 2 1 3 4 0 3 1 3 0 1 0 0 1 0 0 28 0 3131.6446 Q9Y2R4 Q9Y2R4 176 203 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 3;4 5.9237E-32 122.39 By MS/MS 3 0 2 2 15687000 0 0 15687000 8421 2246 8764 36066;36067 30272;30273 30272 2 0 0 3042600 LLQPFLLR QDIEKESESASELHKLLQPFLLRRVKAEVA SASELHKLLQPFLLRRVKAEVATELPKKTE K L L L R R 0 1 0 0 0 1 0 0 0 0 4 0 0 1 1 0 0 0 0 0 0 0 8 0 998.62769 Q86WJ1 Q86WJ1 253 260 CHD1L Chromodomain-helicase-DNA-binding protein 1-like yes yes 2 0.012262 90.986 By MS/MS 2 0 1 1 980030 0 980030 0 8422 1556 8765 36068 30274 30274 1 0 441320 0 LLQPLVPR EAGAPELQRHELSSKLLQPLVPRYEEALSQ RHELSSKLLQPLVPRYEEALSQLEESVKEE K L L P R Y 0 1 0 0 0 1 0 0 0 0 3 0 0 0 2 0 0 0 0 1 0 0 8 0 934.59639 Q8N8A6 Q8N8A6 638 645 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.0072732 97.071 By MS/MS 3 0 1 1 1674000 0 1674000 0 8423 1615 8766 36069 30275 30275 1 0 713640 0 LLQPPAPIMPLDTNWPLLTVSK DPEKETIPDIDPNAKLLQPPAPIMPLDTNW IMPLDTNWPLLTVSKGFFEGTIASKGKGGA K L L S K G 1 0 1 1 0 1 0 0 0 1 5 1 1 0 5 1 2 1 0 1 0 0 22 0 2443.3549 P53621 P53621 794 815 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2;3 0.00076912 62.611 By MS/MS 1.67 0.471 1 2 3 10718000 0 10718000 0 8424 922 8767 36070;36071;36072 30276;30277;30278 30277 3 0 4844800 0 LLQQEEEIK ______________________________ SECSARLLQQEEEIKSLTAEIDRLKNCGCL R L L I K S 0 0 0 0 0 2 3 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1128.6027 P54136 P54136 12 20 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.033972 75.696 By MS/MS 3 0 1 1 0 0 0 0 8425 927 8768 36073 30279 30279 1 0 0 0 LLQQGTAPAQAK AFVKALQQEQEIEQRLLQQGTAPAQAKAEP EQRLLQQGTAPAQAKAEPTAAPHPVLKQVI R L L A K A 3 0 0 0 0 3 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 12 0 1224.6826 Q86YP4 Q86YP4 476 487 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.064038 69.423 By MS/MS By MS/MS 6 0 2 1 1 512270000 0 180290000 331980000 8426 1563 8769 36074;36075 30280;30281;30282 30282 3 0 62411000 49667000 LLQQLFLK EAYSLSDNDYDGIKKLLQQLFLKAPVNTAE DYDGIKKLLQQLFLKAPVNTAELTDLLIQQ K L L L K A 0 0 0 0 0 2 0 0 0 0 4 1 0 1 0 0 0 0 0 0 0 0 8 0 1001.6274 Q9P287 Q9P287 77 84 BCCIP BRCA2 and CDKN1A-interacting protein yes yes 2 0.060869 70.268 By MS/MS By matching 5.67 0.471 1 2 2 1 2222600 0 1506000 716530 8427 2121 8770 36076;36077;36078 30283 30283 1 0 460060 107200 LLQQVSQIYQSIEFSR LQQYVPQLQNNTILRLLQQVSQIYQSIEFS LQQVSQIYQSIEFSRLTSLVPFVDAFQLER R L L S R L 0 1 0 0 0 4 1 0 0 2 2 0 0 1 0 3 0 0 1 1 0 0 16 0 1938.0211 Q14152 Q14152 439 454 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 5.0811E-05 112.43 By MS/MS By MS/MS 2 0 2 1 1 9317000 0 3000500 6316500 8428 1286 8771 36079;36080 30284;30285 30284 2 0 1351200 1427400 LLQSGNSDVVR QLIGLKEKGLPQIARLLQSGNSDVVRSGAS QIARLLQSGNSDVVRSGASLLSNMSRHPLL R L L V R S 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 2 0 0 0 2 0 0 11 0 1186.6306 Q13835 Q13835 603 613 PKP1 Plakophilin-1 yes yes 2 0.05743 68.525 By MS/MS 10 0 1 1 0 0 0 0 8429 1270 8772 36081 30286 30286 1 0 0 0 LLQSLLDTR EHKQRPKVELMPRMRLLQSLLDTRCVYILD LMPRMRLLQSLLDTRCVYILDCWSDVFIWL R L L T R C 0 1 0 1 0 1 0 0 0 0 4 0 0 0 0 1 1 0 0 0 0 0 9 0 1057.6132 Q13045 Q13045 765 773 FLII Protein flightless-1 homolog yes yes 2 0.0085699 90.657 By MS/MS 2 0 1 1 1707000 0 0 1707000 8430 1216 8773 36082 30287 30287 1 0 0 385740 LLQSNPVLEAFGNAK ETCPAPERGGAVRDRLLQSNPVLEAFGNAK LLQSNPVLEAFGNAKTLRNDNSSRFGKYMD R L L A K T 2 0 2 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 15 0 1599.8621 O00159 O00159 174 188 MYO1C Unconventional myosin-Ic yes yes 2 8.8202E-06 97.214 By MS/MS By MS/MS 2 0 2 1 1 13174000 0 13174000 0 8431 106 8774 36083;36084 30288;30289;30290 30290 3 0 5932200 0 LLQSQLQVK ETSDSKTEGWSKNFKLLQSQLQVKKAALTQ WSKNFKLLQSQLQVKKAALTQAKSQRTKQS K L L V K K 0 0 0 0 0 3 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 9 0 1055.6339 Q96I25 Q96I25 25 33 RBM17 Splicing factor 45 yes yes 2 0.026389 78.324 By MS/MS 4.75 1.48 1 1 1 1 4 18659000 0 0 18659000 8432 1798 8775 36085;36086;36087;36088 30291 30291 1 0 0 2943700 LLQTTNNSPMNSKPQQIK VFREGRTKAVGTITKLLQTTNNSPMNSKPQ TTNNSPMNSKPQQIKMQSTKKGPLTKRDEG K L L I K M 0 0 3 0 0 3 0 0 0 1 2 2 1 0 2 2 2 0 0 0 0 0 18 1 2041.0626 O00178 O00178 573 590 GTPBP1 GTP-binding protein 1 yes yes 3 3.5472E-09 127.3 By MS/MS 3 0 1 1 13707000 0 13707000 0 8433 110 8776 36089 30292 30292 1 0 5843300 0 LLQVASPFLEPHLVR IALYNWLIQVDLADKLLQVASPFLEPHLVR LLQVASPFLEPHLVRMAKVDQNRVRYMDLL K L L V R M 1 1 0 0 0 1 1 0 1 0 4 0 0 1 2 1 0 0 0 2 0 0 15 0 1717.9879 O75694 O75694 1052 1066 NUP155 Nuclear pore complex protein Nup155 yes yes 3 0.00034053 92.063 By matching By MS/MS 2.33 0.471 2 1 1 2 4259100 541380 0 3717700 8434 281 8777 36090;36091;36092 30293 30293 1 652300 0 814510 LLQVVEEPQALAAFLR VWSEKGQVEVFALRRLLQVVEEPQALAAFL LQVVEEPQALAAFLRDEQAQMKPIFSFAGH R L L L R D 3 1 0 0 0 2 2 0 0 0 4 0 0 1 1 0 0 0 0 2 0 0 16 0 1796.0196 Q9BQ67 Q9BQ67 183 198 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2;3 4.212E-74 240.21 By MS/MS By MS/MS By MS/MS 3.86 0.639 2 4 1 1 2 4 206680000 2033100 97074000 107580000 8435 1878 8778 36093;36094;36095;36096;36097;36098;36099 30294;30295;30296;30297;30298;30299 30295 6 1586200 30927000 18003000 LLRDYQELMNTK DLEDALQQAKEDLARLLRDYQELMNTKLAL LARLLRDYQELMNTKLALDLEIATYRTLLE R L L T K L 0 1 1 1 0 1 1 0 0 0 3 1 1 0 0 0 1 0 1 0 0 0 12 1 1522.7814 P04264;CON__P04264;CON__Q3TTY5 P04264 461 472 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 8.626E-195 310.59 By MS/MS By MS/MS By MS/MS 5.46 3.17 6 4 2 4 2 3 4 3 4 5 26 7 4 1240900000 1109000000 71784000 60097000 + 8436 413;86 8779;8780 36100;36101;36102;36103;36104;36105;36106;36107;36108;36109;36110;36111;36112;36113;36114;36115;36116;36117;36118;36119;36120;36121;36122;36123;36124;36125;36126;36127;36128;36129;36130;36131;36132;36133;36134;36135;36136 30300;30301;30302;30303;30304;30305;30306;30307;30308;30309;30310;30311;30312;30313;30314;30315;30316;30317;30318;30319;30320;30321;30322;30323;30324;30325;30326;30327;30328;30329;30330 30311 61 31 1081100000 54962000 12684000 LLRDYQELMNVK DLEEALQQAKEDLARLLRDYQELMNVKLAL LARLLRDYQELMNVKLALDVEIATYRKLLE R L L V K L 0 1 1 1 0 1 1 0 0 0 3 1 1 0 0 0 0 0 1 1 0 0 12 1 1520.8021 CON__P12035;P12035;CON__Q01546;Q01546;CON__P35908;CON__P35908v2;P35908 CON__P35908 465 476 KRT3;KRT76;KRT2 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2;3 4.4637E-11 177.44 By MS/MS By MS/MS By MS/MS 5.58 2.98 3 2 3 1 3 1 2 1 3 15 3 1 301620000 277050000 10633000 13932000 + 8437 65;66;71;1135;54 8781 36137;36138;36139;36140;36141;36142;36143;36144;36145;36146;36147;36148;36149;36150;36151;36152;36153;36154;36155 30331;30332;30333;30334;30335;30336;30337;30338;30339;30340;30341;30342;30343;30344 30339 14 267120000 16645000 3001800 LLRKGNYAER SSRAGLQFPVGRVHRLLRKGNYAERVGAGA GRVHRLLRKGNYAERVGAGAPVYLAAVLEY R L L E R V 1 2 1 0 0 0 1 1 0 0 2 1 0 0 0 0 0 0 1 0 0 0 10 2 1218.6833 Q99878;Q96KK5;P0C0S8;Q9BTM1;Q16777;Q6FI13;Q8IUE6;Q93077 Q99878 34 43 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST2H2AC;HIST2H2AA3;HIST2H2AB;HIST1H2AC Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 2-B;Histone H2A type 1-C no no 3 0.014733 73.499 By MS/MS By MS/MS 7.75 0.433 1 3 2 2 2733600 0 1770100 963570 8438 497;1399;1473;1740;1566 8782 36156;36157;36158;36159 30345;30346 30345 2 0 896720 147720 LLSASPVDAAIR HTPVTSLAWAPSGGRLLSASPVDAAIRVWD GGRLLSASPVDAAIRVWDVSTETCVPLPWF R L L I R V 3 1 0 1 0 0 0 0 0 1 2 0 0 0 1 2 0 0 0 1 0 0 12 0 1211.6874 Q9NRG9 Q9NRG9 259 270 AAAS Aladin yes yes 2 0.0031786 107.24 By MS/MS 4 0 1 1 15890000 0 0 15890000 8439 2044 8783 36160 30347 30347 1 0 0 2595400 LLSDATVEKDESHAGK KSGPLFNFDVHDDVRLLSDATVEKDESHAG LSDATVEKDESHAGKVVLRSWYEKNKHIFP R L L G K V 2 0 0 2 0 0 2 1 1 0 2 2 0 0 0 2 1 0 0 1 0 0 16 1 1698.8424 Q14320 Q14320 290 305 FAM50A Protein FAM50A yes yes 4 0.0059928 59.513 By matching By MS/MS 4.5 0.5 1 1 1 1 14295000 2138400 0 12157000 8440 1299 8784 36161;36162 30348 30348 1 1668300 0 1695700 LLSDFLDSEVSELR SKEVEETATAKNVLKLLSDFLDSEVSELRT KLLSDFLDSEVSELRTGAAEGLAKLMFSGL K L L L R T 0 1 0 2 0 0 2 0 0 0 4 0 0 1 0 3 0 0 0 1 0 0 14 0 1621.8199 Q9BPX3 Q9BPX3 695 708 NCAPG Condensin complex subunit 3 yes yes 2 0.00056782 139.86 By MS/MS 2 0 1 1 13950000 0 0 13950000 8441 1873 8785 36163 30349 30349 1 0 0 3152500 LLSDPNYGVHLPAVK EGRLVHIIGALRTSKLLSDPNYGVHLPAVK LLSDPNYGVHLPAVKLRRHVEMYQWVETEE K L L V K L 1 0 1 1 0 0 0 1 1 0 3 1 0 0 2 1 0 0 1 2 0 0 15 0 1621.8828 Q9BTV4 Q9BTV4 100 114 TMEM43 Transmembrane protein 43 yes yes 3 0.040521 42.682 By MS/MS 5 0 1 1 10375000 0 0 10375000 8442 1902 8786 36164 30350 30350 1 0 0 1447100 LLSEFQTIMGNLDGSSSGLQK L L Q K 0 0 1 1 0 2 1 3 0 1 4 1 1 1 0 4 1 0 0 0 0 0 21 0 2224.1045 REV__Q289M2 yes no 2 0.0073645 59.306 By MS/MS 2 0 1 1 3620700 3620700 0 0 + 8443 2321 8787 36165 30351 30351 1 4362500 0 0 LLSELDQQSTEMPR DVESCHDMAALNILKLLSELDQQSTEMPRT KLLSELDQQSTEMPRTGNGPMSVCGRC___ K L L P R T 0 1 0 1 0 2 2 0 0 0 3 0 1 0 1 2 1 0 0 0 0 0 14 0 1645.7981 O95793 O95793 552 565 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 4.7667E-107 267.57 By MS/MS By MS/MS 4 0 2 1 1 52180000 0 12893000 39287000 8444 341 8788 36166;36167 30352;30353 30353 2 0 4278900 6416800 LLSFMAPIDHTTMNDDAR KASKGRKLRFHVLSKLLSFMAPIDHTTMND FMAPIDHTTMNDDARTELYRSLFGQLHPPD K L L A R T 2 1 1 3 0 0 0 0 1 1 2 0 2 1 1 1 2 0 0 0 0 0 18 0 2046.9503 Q9NY61 Q9NY61 523 540 AATF Protein AATF yes yes 3 0.0018877 65.175 By MS/MS 2.5 0.5 1 1 2 7065500 0 0 7065500 8445 2094 8789 36168;36169 30354 30354 1 0 0 1411700 LLSGPSQESPQTLGK RRCRGPLAMGLAQPRLLSGPSQESPQTLGK LLSGPSQESPQTLGKESRGLRQQGTSVAQS R L L G K E 0 0 0 0 0 2 1 2 0 0 3 1 0 0 2 3 1 0 0 0 0 0 15 0 1540.8097 Q9BWE0 Q9BWE0 19 33 REPIN1 Replication initiator 1 yes yes 2 0.00028316 129.84 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 12628000 0 6888100 5740100 8446 1923 8790 36170;36171;36172 30355;30356 30356 2 0 2521700 1113300 LLSGSLDR HKTVTCLCLSSSGQRLLSGSLDRKVKVYST LSSSGQRLLSGSLDRKVKVYSTTSYKVVHS R L L D R K 0 1 0 1 0 0 0 1 0 0 3 0 0 0 0 2 0 0 0 0 0 0 8 0 859.47633 Q8TED0 Q8TED0 263 270 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.0045431 101.28 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 23900000 0 6490800 17409000 8447 1665 8791 36173;36174;36175;36176 30357;30358 30357 2 0 2154100 2815300 LLSHGVPLPNWLINSYK YKVQNNLYHHCVINKLLSHGVPLPNWLINS SHGVPLPNWLINSYKKVDAAELLRLYLNYD K L L Y K K 0 0 2 0 0 0 0 1 1 1 4 1 0 0 2 2 0 1 1 1 0 0 17 0 1950.0727 Q12769 Q12769 1314 1330 NUP160 Nuclear pore complex protein Nup160 yes yes 3 0.015954 47.204 By MS/MS 1.5 0.5 1 1 2 6509700 0 0 6509700 8448 1196 8792 36177;36178 30359 30359 1 0 0 1444700 LLSHSLLVTLASHLPSDFTPAVHASLDK DLHAHKLRVDPVNFKLLSHSLLVTLASHLP LPSDFTPAVHASLDKFLANVSTVLTSKYR_ K L L D K F 3 0 0 2 0 0 0 0 3 0 7 1 0 1 2 5 2 0 0 2 0 0 28 0 2968.6022 CON__P01966 CON__P01966 101 128 yes yes 3;4 1.0224E-38 146.15 By MS/MS 8 0 2 2 136370000 0 0 136370000 + 8449 34 8793 36179;36180 30360;30361;30362 30361 2 0 0 20907000 LLSISGKR EEDAESEDEEEEDVKLLSISGKRSAPGGGS EEEEDVKLLSISGKRSAPGGGSKVPQKKVK K L L K R S 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 2 0 0 0 0 0 0 8 1 872.54435 P06748 P06748 135 142 NPM1 Nucleophosmin yes yes 2 1.14E-09 173.93 By matching By MS/MS 6.33 0.471 2 1 1 2 19462000 962930 18499000 0 8450 449 8794 36181;36182;36183 30363;30364 30363 2 1282100 7435700 0 LLSITVR ILQSTRLPLISGFYKLLSITVRNAKKIKYF PLISGFYKLLSITVRNAKKIKYFEGVSPKS K L L V R N 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 1 0 0 1 0 0 7 0 800.51199 P78527 P78527 669 675 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.011521 118.01 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 18448000 1072500 3329300 14046000 8451 1089 8795 36184;36185;36186;36187 30365;30366 30366 2 1072500 1627300 3049000 LLSLLPEYVVPYTIHLLAHDPDYVK VRREYLKQHAAVSEKLLSLLPEYVVPYTIH PYTIHLLAHDPDYVKVQDIEQLKDVKECLW K L L V K V 1 0 0 2 0 0 1 0 2 1 6 1 0 0 3 1 1 0 3 3 0 0 25 0 2907.5786 Q9NTI5 Q9NTI5 983 1007 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 4 1.1121E-05 70.533 By MS/MS 1.5 0.5 1 1 2 32608000 0 0 32608000 8452 2053 8796 36188;36189 30367 30367 1 0 0 7268500 LLSMGQLDLLR MPHIEAQQRAVAINRLLSMGQLDLLRSNTG AINRLLSMGQLDLLRSNTGLLYRIKDSQNA R L L L R S 0 1 0 1 0 1 0 1 0 0 5 0 1 0 0 1 0 0 0 0 0 0 11 0 1257.7115 Q9H1D9 Q9H1D9 57 67 POLR3F DNA-directed RNA polymerase III subunit RPC6 yes yes 2 0.00032712 121.73 By MS/MS 6 0 1 1 2117800 0 0 2117800 8453 1967 8797 36190 30368 30368 1 0 0 316840 LLSNDEVTIK YDELVLMMQRVFRGKLLSNDEVTIKYKDED VFRGKLLSNDEVTIKYKDEDGDLITIFDSS K L L I K Y 0 0 1 1 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1130.6183 Q92734 Q92734 48 57 TFG Protein TFG yes yes 2 0.060489 70.1 By MS/MS 4 0 1 1 16622000 0 16622000 0 8454 1718 8798 36191 30369 30369 1 0 5516200 0 LLSPFMPFVTEELFQR CARQTLYTCLDVGLRLLSPFMPFVTEELFQ LSPFMPFVTEELFQRLPRRMPQAPPSLCVT R L L Q R L 0 1 0 0 0 1 2 0 0 0 3 0 1 3 2 1 1 0 0 1 0 0 16 0 1953.007 P26640 P26640 1059 1074 VARS Valine--tRNA ligase yes yes 3 2.2627E-05 101.2 By MS/MS 2 0 1 1 715720 0 0 715720 8455 673 8799 36192 30370 30370 1 0 0 161740 LLSPSHVVQFR WVSDQGLLLLIDLIRLLSPSHVVQFRSDHS DLIRLLSPSHVVQFRSDHSKYMPDLTPQYV R L L F R S 0 1 0 0 0 1 0 0 1 0 2 0 0 1 1 2 0 0 0 2 0 0 11 0 1281.7194 Q5SY16 Q5SY16 425 435 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 0.0047455 80.916 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 39068000 0 11562000 27506000 8456 1446 8800 36193;36194;36195;36196 30371;30372 30372 2 0 4928900 5381700 LLSPSILKPFPLWTGK ELVYRGLTDKVGRVKLLSPSILKPFPLWTG LSPSILKPFPLWTGKQVVSTLLINIIPEDH K L L G K Q 0 0 0 0 0 0 0 1 0 1 4 2 0 1 3 2 1 1 0 0 0 0 16 1 1796.06 O95602 O95602 670 685 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.0017313 76.151 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 8506800 0 1452500 7054400 8457 330 8801 36197;36198 30373;30374 30374 2 0 654060 1520000 LLSRPQDALEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDALEGVVLS DALEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 2 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 2 0 0 21 1 2249.2379 Q9NVI7 Q9NVI7 355 375 ATAD3A ATPase family AAA domain-containing protein 3A yes yes 2;3 2.3336E-28 195.38 By MS/MS By MS/MS 3 0.632 1 3 1 3 2 67820000 0 13281000 54539000 8458 2066 8802 36199;36200;36201;36202;36203 30375;30376;30377;30378 30378 4 0 4871900 10578000 LLSRPQDVLEGVVLSPSLEAR TVLEALRHPIQVSRRLLSRPQDVLEGVVLS DVLEGVVLSPSLEARVRDIAIATRNTKKNR R L L A R V 1 2 0 1 0 1 2 1 0 0 5 0 0 0 2 3 0 0 0 3 0 0 21 1 2277.2692 Q5T9A4 Q5T9A4 307 327 ATAD3B ATPase family AAA domain-containing protein 3B no no 3 6.0621E-08 101.94 By MS/MS By MS/MS 3 0 2 1 1 10203000 0 1949200 8253800 8459 1456 8803 36204;36205 30379;30380 30380 2 0 830930 1600800 LLSSEDIEGMR MSESEQALKGTSQIKLLSSEDIEGMRLVCR SQIKLLSSEDIEGMRLVCRLAREVLDVAAG K L L M R L 0 1 0 1 0 0 2 1 0 1 2 0 1 0 0 2 0 0 0 0 0 0 11 0 1248.602 P53582 P53582 130 140 METAP1 Methionine aminopeptidase 1 yes yes 2 1.7405E-73 241.94 By MS/MS 4.5 0.5 1 1 2 49730000 0 0 49730000 8460 920 8804 36206;36207 30381 30381 1 0 0 7082400 LLSSFDFFLTDAR QTLKKEYKSYEAKLRLLSSFDFFLTDARIR LRLLSSFDFFLTDARIRRLLPSLIGRHFYQ R L L A R I 1 1 0 2 0 0 0 0 0 0 3 0 0 3 0 2 1 0 0 0 0 0 13 0 1530.7718 O76021 O76021 148 160 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 2.7115E-26 206.48 By MS/MS 2.5 1.12 1 1 1 1 4 76879000 0 0 76879000 8461 295 8805 36208;36209;36210;36211 30382;30383;30384 30383 3 0 0 14632000 LLSTDSPPASGLYQEILAQLVPFAR IPVLRKTLWRQLQSRLLSTDSPPASGLYQE GLYQEILAQLVPFARAKDLSVLMDRLPSLL R L L A R A 3 1 0 1 0 2 1 1 0 1 5 0 0 1 3 3 1 0 1 1 0 0 25 0 2685.4378 O60287 O60287 1310 1334 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 6.4358E-06 74.364 By MS/MS 1.5 0.5 1 1 2 4601100 0 0 4601100 8462 224 8806 36212;36213 30385 30385 1 0 0 1005000 LLSVEGSTLR NAQVTTENQLKYLTRLLSVEGSTLREALTH KYLTRLLSVEGSTLREALTHRKIIAKGEEL R L L L R E 0 1 0 0 0 0 1 1 0 0 3 0 0 0 0 2 1 0 0 1 0 0 10 0 1073.6081 O00159 O00159 341 350 MYO1C Unconventional myosin-Ic yes yes 2 0.00049145 135.79 By MS/MS 2 0 1 1 10552000 0 10552000 0 8463 106 8807 36214 30386 30386 1 0 4751900 0 LLTEFNK YHVDRSGNVHHQFQKLLTEFNKSTDAYELK NVHHQFQKLLTEFNKSTDAYELKIANKLFG K L L N K S 0 0 1 0 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 863.47527 P29508;P48594 P29508 88 94 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 0.014165 113.08 By MS/MS 9.5 0.5 1 1 2 25440000 25440000 0 0 8464 700 8808 36215;36216 30387;30388 30387 2 25007000 0 0 LLTGELLPTDGMIR ALVGPNGAGKSTLLKLLTGELLPTDGMIRK KLLTGELLPTDGMIRKHSHVKIGRYHQHLQ K L L I R K 0 1 0 1 0 0 1 2 0 1 4 0 1 0 1 0 2 0 0 0 0 0 14 0 1527.8331 Q9UG63 Q9UG63 442 455 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.00016998 152.54 By matching By MS/MS By MS/MS 3 0 3 1 1 1 24755000 616650 6418200 17720000 8465 2142 8809 36217;36218;36219 30389;30390 30390 2 711480 2736100 3436900 LLTGWMPTAIR MVSVVELKQSSVMQRLLTGWMPTAIRGDQS VMQRLLTGWMPTAIRGDQSPSDRPLSLAVH R L L I R G 1 1 0 0 0 0 0 1 0 1 2 0 1 0 1 0 2 1 0 0 0 0 11 0 1257.6904 Q12769 Q12769 266 276 NUP160 Nuclear pore complex protein Nup160 yes yes 2 0.022801 82.645 By MS/MS 2 0 1 1 6287600 0 0 6287600 8466 1196 8810 36220 30391 30391 1 0 0 1420900 LLTLEVPGVTESRPSVLR ESVPMTWDPVDQNPRLLTLEVPGVTESRPS LEVPGVTESRPSVLRGDHLFALLSSETHQE R L L L R G 0 2 0 0 0 0 2 1 0 0 4 0 0 0 2 2 2 0 0 3 0 0 18 1 1965.1259 Q9HCE1 Q9HCE1 376 393 MOV10 Putative helicase MOV-10 yes yes 3 3.3296E-09 132.84 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 20178000 0 12504000 7674700 8467 2011 8811 36221;36222;36223 30392;30393 30392 2 0 5599000 1734300 LLTQDEGPALVPGGR AILIRDPRTARMGWRLLTQDEGPALVPGGR LLTQDEGPALVPGGRLGDLWDYHQHRYLQG R L L G R L 1 1 0 1 0 1 1 3 0 0 3 0 0 0 2 0 1 0 0 1 0 0 15 0 1521.8151 Q5T440 Q5T440 198 212 IBA57 Putative transferase CAF17, mitochondrial yes yes 2 0.0016385 93.561 By MS/MS 6.5 0.5 1 1 2 5842000 0 0 5842000 8468 1451 8812 36224;36225 30394 30394 1 0 0 950960 LLTQGFTNWNK EAESLNDEELEEKEKLLTQGFTNWNKRDFN EKEKLLTQGFTNWNKRDFNQFIKANEKWGR K L L N K R 0 0 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 0 0 0 11 0 1320.6826 O60264 O60264 837 847 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 4.2529E-27 204.7 By MS/MS 2 0 1 1 54798000 0 0 54798000 8469 223 8813 36226 30395 30395 1 0 0 12383000 LLTQGFTNWNKR EAESLNDEELEEKEKLLTQGFTNWNKRDFN KEKLLTQGFTNWNKRDFNQFIKANEKWGRD K L L K R D 0 1 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 0 0 0 12 1 1476.7837 O60264 O60264 837 848 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 5.6822E-19 195.7 By MS/MS 1.8 0.748 2 2 1 5 43020000 0 0 43020000 8470 223 8814 36227;36228;36229;36230;36231 30396;30397 30397 2 0 0 9551800 LLTQGFTNWTK GAEPLTPEETEEKEKLLTQGFTNWTKRDFN EKEKLLTQGFTNWTKRDFNQFIKANEKYGR K L L T K R 0 0 1 0 0 1 0 1 0 0 2 1 0 1 0 0 3 1 0 0 0 0 11 0 1307.6874 P28370 P28370 852 862 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 6.3378E-10 171.56 By MS/MS 2 0.816 1 1 1 3 32490000 0 0 32490000 8471 693 8815 36232;36233;36234 30398 30398 1 0 0 7227000 LLTQHENIKNEIDNYEEDYQK IASEDMPNTLTEAEKLLTQHENIKNEIDNY NIKNEIDNYEEDYQKMRDMGEMVTQGQTDA K L L Q K M 0 0 3 2 0 2 4 0 1 2 2 2 0 0 0 0 1 0 2 0 0 0 21 1 2635.2402 Q01082 Q01082 1100 1120 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3;4 2.7243E-11 113.63 By MS/MS 1 0 2 2 45907000 0 0 45907000 8472 1128 8816 36235;36236 30399;30400 30400 2 0 0 9891400 LLTQYILNLGK NLGAKLYLTNSKQTKLLTQYILNLGKYDQN KQTKLLTQYILNLGKYDQNYDIRDRTRFIR K L L G K Y 0 0 1 0 0 1 0 1 0 1 4 1 0 0 0 0 1 0 1 0 0 0 11 0 1274.7598 O00203 O00203 553 563 AP3B1 AP-3 complex subunit beta-1 yes yes 2 8.9967E-05 141.52 By matching By MS/MS By MS/MS 2.17 0.687 1 3 2 1 2 3 52974000 1919500 5518500 45536000 8473 111 8817 36237;36238;36239;36240;36241;36242 30401;30402;30403;30404;30405 30404 5 2312800 2407300 9812400 LLTSFLPAQLLR ATGNRWCSWSLSQARLLTSFLPAQLLRLYQ QARLLTSFLPAQLLRLYQLMLFTLPGTPVF R L L L R L 1 1 0 0 0 1 0 0 0 0 5 0 0 1 1 1 1 0 0 0 0 0 12 0 1370.8286 P08195 P08195 440 451 SLC3A2 4F2 cell-surface antigen heavy chain yes yes 2 0.00021979 131.5 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 16189000 0 7525400 8663300 8474 468 8818 36243;36244;36245;36246 30406;30407;30408 30407 3 0 2856400 1680300 LLTTILHSDGDLTEQGK GMKNNHSKSGTSTLRLLTTILHSDGDLTEQ TTILHSDGDLTEQGKISKPDMSRLRLAAGS R L L G K I 0 0 0 2 0 1 1 2 1 1 4 1 0 0 0 1 3 0 0 0 0 0 17 0 1839.9578 Q9NTI5 Q9NTI5 853 869 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 7.2483E-20 193.49 By MS/MS By MS/MS 1.88 0.781 3 3 2 2 6 143540000 0 10924000 132610000 8475 2053 8819 36247;36248;36249;36250;36251;36252;36253;36254 30409;30410;30411;30412;30413;30414 30414 6 0 5039800 29018000 LLTTLEQEVQK L L Q K 0 0 0 0 0 2 2 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 11 0 1300.7238 REV__Q15149 yes yes 2 0.007179 96.711 By MS/MS 4 0 1 1 6916900 0 6916900 0 + 8476 2333 8820 36255 30415 30415 1 0 2295500 0 LLTWVIGTGSPR DENGPELLPRVAMLRLLTWVIGTGSPRLQV MLRLLTWVIGTGSPRLQVLASDTLTTLCAS R L L P R L 0 1 0 0 0 0 0 2 0 1 2 0 0 0 1 1 2 1 0 1 0 0 12 0 1298.7347 Q92616 Q92616 1043 1054 GCN1L1 Translational activator GCN1 yes yes 2 0.00090516 119.22 By matching By MS/MS 1 0 2 1 1 5723600 1569100 0 4154500 8477 1712 8821 36256;36257 30416 30416 1 1569100 0 895150 LLTYNSLYK PLTQKHGLGYSLLERLLTYNSLYKKGPDGY YSLLERLLTYNSLYKKGPDGYDPQFITKLL R L L Y K K 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 1 0 2 0 0 0 9 0 1113.607 Q9HCE1 Q9HCE1 706 714 MOV10 Putative helicase MOV-10 yes yes 2 0.050444 71.379 By MS/MS 2 0 1 1 14241000 0 14241000 0 8478 2011 8822 36258 30417 30417 1 0 6413000 0 LLVAGSEDGGVQLFDISGR FKDTAYCATFRQDGRLLVAGSEDGGVQLFD GSEDGGVQLFDISGRAPLRQFEGHTKAVHT R L L G R A 1 1 0 2 0 1 1 4 0 1 3 0 0 1 0 2 0 0 0 2 0 0 19 0 1931.9953 Q8TED0 Q8TED0 94 112 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 5.3817E-09 148.91 By MS/MS 4 0 1 1 13830000 0 0 13830000 8479 1665 8823 36259 30418 30418 1 0 0 2258800 LLVATSVAAR DRDSIINDFKNGTCKLLVATSVAARGLDVK NGTCKLLVATSVAARGLDVKHLILVVNYSC K L L A R G 3 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 10 0 999.60768 Q7L014 Q7L014 672 681 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.004302 99.442 By MS/MS 2 0 1 1 14632000 0 0 14632000 8480 1520 8824 36260 30419 30419 1 0 0 3306500 LLVDVDESTLSPEEQK NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ LVDVDESTLSPEEQKERKIMKLLLKIKNGT K L L Q K E 0 0 0 2 0 1 3 0 0 0 3 1 0 0 1 2 1 0 0 2 0 0 16 0 1800.8993 O75533 O75533 478 493 SF3B1 Splicing factor 3B subunit 1 yes yes 2 4.1859E-05 135.1 By matching By MS/MS 1.5 0.5 1 1 1 1 18231000 989680 0 17241000 8481 270 8825 36261;36262 30420 30420 1 989680 0 3896100 LLVDVDESTLSPEEQKER NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ DVDESTLSPEEQKERKIMKLLLKIKNGTPP K L L E R K 0 1 0 2 0 1 4 0 0 0 3 1 0 0 1 2 1 0 0 2 0 0 18 1 2086.043 O75533 O75533 478 495 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 5.3685E-51 225.13 By MS/MS 1.5 0.5 2 2 4 63370000 0 0 63370000 8482 270 8826 36263;36264;36265;36266 30421;30422;30423 30423 3 0 0 14168000 LLVEFAR PGGHQTVLFSATLPKLLVEFARAGLTEPVL LFSATLPKLLVEFARAGLTEPVLIRLDVDT K L L A R A 1 1 0 0 0 0 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 846.49634 Q8TDD1 Q8TDD1 284 290 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.033493 89.673 By MS/MS By MS/MS 2 0 2 1 1 10523000 0 2873900 7649300 8483 1661 8827 36267;36268 30424;30425 30425 2 0 1294200 1728600 LLVFTAAGVKPQGK KRMRKSNPGWENLEKLLVFTAAGVKPQGKV KLLVFTAAGVKPQGKVAGFDLDGTLITTRS K L L G K V 2 0 0 0 0 1 0 2 0 0 2 2 0 1 1 0 1 0 0 2 0 0 14 1 1427.85 Q96T60 Q96T60 153 166 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2;3 0.023809 96.342 By MS/MS 3.5 0.5 2 2 4 32885000 0 0 32885000 8484 1840 8828 36269;36270;36271;36272 30426;30427 30427 2 0 0 5565000 LLVGSEDYGR FRDMDDEESWIKEKKLLVGSEDYGRDLTGV IKEKKLLVGSEDYGRDLTGVQNLRKKHKRL K L L G R D 0 1 0 1 0 0 1 2 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1107.556 Q13813 Q13813 1785 1794 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0041356 99.802 By MS/MS By MS/MS 1 0 2 1 1 59980000 0 22440000 37541000 8485 1268 8829 36273;36274 30428;30429 30428 2 0 10968000 8088700 LLVHLFPELFTHENLR SIYESSLSIGNFASRLLVHLFPELFTHENL LVHLFPELFTHENLRKQYNCSGSLGKKQLD R L L L R K 0 1 1 0 0 0 2 0 2 0 5 0 0 2 1 0 1 0 0 1 0 0 16 0 1977.0836 Q5T5X7 Q5T5X7 577 592 BEND3 BEN domain-containing protein 3 yes yes 4 0.0022478 67.846 By MS/MS 2.5 0.5 1 1 2 3717800 0 0 3717800 8486 1452 8830 36275;36276 30430 30430 1 0 0 793660 LLVLDPAQR KAYVRDPYALDLIDKLLVLDPAQRIDSDDA LDLIDKLLVLDPAQRIDSDDALNHDFFWSD K L L Q R I 1 1 0 1 0 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 9 0 1023.6077 P50750 P50750 295 303 CDK9 Cyclin-dependent kinase 9 yes yes 2 0.062217 67.981 By MS/MS 5 0 1 1 6218400 0 0 6218400 8487 882 8831 36277 30431 30431 1 0 0 867350 LLVPLVPDLQDVAQLR MIMDSIAAFLVLPNRLLVPLVPDLQDVAQL LVPLVPDLQDVAQLRSPLPRGIIRIHLLAA R L L L R S 1 1 0 2 0 2 0 0 0 0 5 0 0 0 2 0 0 0 0 3 0 0 16 0 1788.0509 Q9BSJ8 Q9BSJ8 308 323 ESYT1 Extended synaptotagmin-1 yes yes 2;3 0.0053963 79.82 By MS/MS 2 0 2 2 1757900 0 1757900 0 8488 1898 8832 36278;36279 30432;30433 30432 2 0 791600 0 LLVPQAQPPMPAQR RPGMPPTMMDPFRKRLLVPQAQPPMPAQRR RLLVPQAQPPMPAQRRGLKRRKMADKVLPQ R L L Q R R 2 1 0 0 0 3 0 0 0 0 2 0 1 0 4 0 0 0 0 1 0 0 14 0 1544.8497 Q92925 Q92925 119 132 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 2 0.00038909 128.36 By MS/MS 3.5 0.5 1 1 2 17614000 0 0 17614000 8489 1732 8833 36280;36281 30434;30435 30435 1 0 0 3048700 LLVPTQFVGAIIGK PGSVSKQKPCDLPLRLLVPTQFVGAIIGKE RLLVPTQFVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 1 1 0 1 0 0 2 0 0 14 0 1454.8861 O00425 O00425 200 213 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 0.00046436 120.68 By MS/MS By MS/MS By MS/MS 4.12 1.51 2 9 5 3 2 3 3 14 7 331560000 5320100 186050000 140190000 8490 121 8834 36282;36283;36284;36285;36286;36287;36288;36289;36290;36291;36292;36293;36294;36295;36296;36297;36298;36299;36300;36301;36302;36303;36304;36305 30436;30437;30438;30439;30440;30441;30442;30443;30444;30445;30446;30447;30448;30449;30450;30451;30452;30453;30454;30455;30456;30457;30458;30459 30439 24 5740900 69285000 27050000 LLVPTQYVGAIIGK AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE RLLVPTQYVGAIIGKEGATIRNITKQTQSK R L L G K E 1 0 0 0 0 1 0 2 0 2 2 1 0 0 1 0 1 0 1 2 0 0 14 0 1470.881 Q9NZI8 Q9NZI8 200 213 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 0.00036871 131.28 By MS/MS By MS/MS 3.95 1.75 2 2 5 3 4 2 2 10 10 631430000 0 330110000 301320000 8491 2104 8835 36306;36307;36308;36309;36310;36311;36312;36313;36314;36315;36316;36317;36318;36319;36320;36321;36322;36323;36324;36325 30460;30461;30462;30463;30464;30465;30466;30467;30468;30469;30470;30471;30472;30473;30474;30475;30476;30477;30478;30479;30480 30462 20 0 129020000 56326000 LLVPTQYVGAIIGKEGATIR AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE QYVGAIIGKEGATIRNITKQTQSKIDVHRK R L L I R N 2 1 0 0 0 1 1 3 0 3 2 1 0 0 1 0 2 0 1 2 0 0 20 1 2098.215 Q9NZI8 Q9NZI8 200 219 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 3 0.013845 44.382 By MS/MS 3 0 1 1 868880 0 868880 0 8492 2104 8836 36326 30481 30481 1 0 370410 0 LLVPYLMEAIR HPVSCKDTPGFIVNRLLVPYLMEAIRLYER IVNRLLVPYLMEAIRLYERGDASKEDIDTA R L L I R L 1 1 0 0 0 0 1 0 0 1 3 0 1 0 1 0 0 0 1 1 0 0 11 0 1316.7526 Q16836 Q16836 222 232 HADH Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial yes yes 2 0.00032773 126.07 By matching By MS/MS 6 0 2 1 1 7471000 232090 0 7238900 8493 1401 8837 36327;36328 30482 30482 1 309030 0 1083000 LLVQHEINTLR LIHRKAVPGNVAKLRLLVQHEINTLRAQEK AKLRLLVQHEINTLRAQEKHGLQPALLVHW R L L L R A 0 1 1 0 0 1 1 0 1 1 3 0 0 0 0 0 1 0 0 1 0 0 11 0 1334.767 A6NKT7;Q7Z3J3;O14715;Q99666;P49792 P49792 553 563 RGPD3;RGPD4;RGPD8;RGPD5;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 5/6;E3 SUMO-protein ligase RanBP2 no no 2;3 3.5013E-05 147.4 By matching By MS/MS 1.75 0.829 4 2 2 2 6 123800000 0 6197800 117600000 8494 871;17 8838 36329;36330;36331;36332;36333;36334;36335;36336 30483;30484;30485;30486 30484 4 0 3029400 25562000 LLVSASQDGK HLAKIYAMHWGTDSRLLVSASQDGKLIIWD GTDSRLLVSASQDGKLIIWDSYTTNKVHAI R L L G K L 1 0 0 1 0 1 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1016.5502 P62873 P62873 69 78 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 no no 2 0.00064115 132.76 By matching By MS/MS 6 0 2 1 1 29846000 7908500 0 21937000 8495 1043 8839 36337;36338 30487 30487 1 10530000 0 3282000 LLVVTDPR GTFTNQIQAAFREPRLLVVTDPRADHQPLT AAFREPRLLVVTDPRADHQPLTEASYVNLP R L L P R A 0 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 911.54402 P08865 P08865 121 128 RPSA 40S ribosomal protein SA yes yes 2 0.0026928 107.59 By MS/MS 6 0 1 1 122350000 0 122350000 0 8496 480 8840 36339 30488 30488 1 0 42354000 0 LLVVYPWTQR AKVKVDEVGGEALGRLLVVYPWTQRFFESF EALGRLLVVYPWTQRFFESFGDLSSADAIL R L L Q R F 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 2 0 0 10 0 1273.7183 P68871;P02042;P69892;P69891;P02100;CON__Q3SX09;CON__P02070 CON__Q3SX09 86 95 HBB;HBD;HBG2;HBG1;HBE1 Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon no no 2;3 1.6909E-50 186.3 By MS/MS By MS/MS By MS/MS 6.73 3.03 2 1 1 2 2 1 1 3 4 5 10 4 8 3073300000 838190000 173680000 2061400000 + 8497 82;1081 8841 36340;36341;36342;36343;36344;36345;36346;36347;36348;36349;36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360;36361 30489;30490;30491;30492;30493;30494;30495;30496;30497;30498;30499;30500;30501;30502;30503;30504;30505;30506;30507;30508;30509;30510;30511;30512;30513;30514;30515 30515 26 791400000 593610000 649270000 LLWASLR LQTVKSLAGVSLMLRLLWASLRWDDMAAKA AGVSLMLRLLWASLRWDDMAAKAPPGGGTT R L L L R W 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 1 0 0 0 0 7 0 857.51232 Q12830 Q12830 1912 1918 BPTF Nucleosome-remodeling factor subunit BPTF yes yes 2 0.056356 82.386 By MS/MS 1 0 1 1 1285400 0 0 1285400 8498 1203 8842 36362 30516 30516 0 0 0 276950 LLWGLEGLPLTVSAVQGAHPVLR EALVAAVRCYDDLSRLLWGLEGLPLTVSAV PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS R L L L R Y 2 1 0 0 0 1 1 3 1 0 6 0 0 0 2 1 1 1 0 3 0 0 23 0 2425.3846 Q9H6R4 Q9H6R4 672 694 NOL6 Nucleolar protein 6 yes yes 3;4 1.4004E-07 86.539 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 29169000 0 5648400 23521000 8499 1988 8843 36363;36364;36365;36366;36367 30517;30518;30519;30520;30521 30517 5 0 2543500 5006300 LLWHGSR ECQRYKPFKQLHNRRLLWHGSRTTNFAGIL FKQLHNRRLLWHGSRTTNFAGILSQGLRIA R L L S R T 0 1 0 0 0 0 0 1 1 0 2 0 0 0 0 1 0 1 0 0 0 0 7 0 867.47152 P09874 P09874 859 865 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.043506 79.939 By MS/MS 2 0.816 1 1 1 3 93314000 0 0 93314000 8500 492 8844 36368;36369;36370 30522 30522 1 0 0 20572000 LLWTTSR PQALVQIMRNYSYEKLLWTTSRVLKVLSVC MRNYSYEKLLWTTSRVLKVLSVCPSNKPAI K L L S R V 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 2 1 0 0 0 0 7 0 875.4865 P14923;P35222 P14923 327 333 JUP;CTNNB1 Junction plakoglobin;Catenin beta-1 yes no 2 0.027939 94.407 By MS/MS By matching 7 2.51 1 1 2 1 2 5 2 44863000 36896000 0 7967600 8501 567 8845 36371;36372;36373;36374;36375;36376;36377 30523;30524 30524 2 41795000 0 14640000 LLYDEYMYYLIEHR TLRSAASFGSFHLIRLLYDEYMYYLIEHRV RLLYDEYMYYLIEHRVAQAKGETPIAVMGE R L L H R V 0 1 0 1 0 0 2 0 1 1 3 0 1 0 0 0 0 0 4 0 0 0 14 0 1919.9128 P22670 P22670 880 893 RFX1 MHC class II regulatory factor RFX1 yes yes 3 0.00025503 107.14 By MS/MS 2.5 0.5 1 1 2 6903200 0 0 6903200 8502 633 8846 36378;36379 30525 30525 1 0 0 1523600 LLYDTFSAFGVILQTPK ANIFIGNLDPEIDEKLLYDTFSAFGVILQT YDTFSAFGVILQTPKIMRDPDTGNSKGYAF K L L P K I 1 0 0 1 0 1 0 1 0 1 3 1 0 2 1 1 2 0 1 1 0 0 17 0 1912.0346 Q15427 Q15427 115 131 SF3B4 Splicing factor 3B subunit 4 yes yes 2;3 0.00082525 94.725 By MS/MS 3.67 0.471 1 2 3 9407600 0 0 9407600 8503 1365 8847 36380;36381;36382 30526;30527 30526 2 0 0 1557800 LLYGMALVR KLLDVTGGLGTDELRLLYGMALVRFVNLIS GTDELRLLYGMALVRFVNLISERKTKFAKV R L L V R F 1 1 0 0 0 0 0 1 0 0 3 0 1 0 0 0 0 0 1 1 0 0 9 0 1034.5947 Q9Y4W2 Q9Y4W2 113 121 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.00044644 119.57 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 21601000 0 7784200 13817000 8504 2289 8848 36383;36384;36385 30528;30529 30529 2 0 3375000 2679800 LLYNNVSNFGR VGDRCYDEKMYDAAKLLYNNVSNFGRLAST DAAKLLYNNVSNFGRLASTLVHLGEYQAAV K L L G R L 0 1 3 0 0 0 0 1 0 0 2 0 0 1 0 1 0 0 1 1 0 0 11 0 1295.6622 Q00610 Q00610 1216 1226 CLTC Clathrin heavy chain 1 yes yes 2 3.3395E-19 189.82 By MS/MS By MS/MS By MS/MS 2.12 1.05 3 2 2 1 1 3 4 229170000 0 73832000 155340000 8505 1125 8849 36386;36387;36388;36389;36390;36391;36392;36393 30530;30531;30532;30533;30534;30535;30536 30536 7 0 33794000 33072000 LLYNRPGTVSSLK FLSKKKTDELRNLHKLLYNRPGTVSSLKKN HKLLYNRPGTVSSLKKNVGQFSGFPFEKGS K L L L K K 0 1 1 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 1 1 0 0 13 1 1446.8195 P35659 P35659 112 124 DEK Protein DEK yes yes 2;3 9.3165E-17 193.96 By matching By MS/MS By MS/MS 4.63 1.66 3 2 4 3 4 3 1 8 10 1297000000 2459000 72678000 1221800000 8506 758 8850 36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409;36410;36411;36412 30537;30538;30539;30540;30541;30542;30543;30544;30545;30546;30547;30548;30549;30550;30551 30539 15 2962800 23521000 187580000 LLYTFPGWK SEQGSLQLWNVKSNKLLYTFPGWKVGVTAL NVKSNKLLYTFPGWKVGVTALQQAPAVDVV K L L W K V 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 0 1 1 1 0 0 0 9 0 1123.6066 Q8NI36 Q8NI36 239 247 WDR36 WD repeat-containing protein 36 yes yes 2 0.013069 86.794 By MS/MS By matching 2.5 0.5 1 1 1 1 8171700 0 6488700 1683000 8507 1648 8851 36413;36414 30552 30552 1 0 2922000 326420 LLYTGDFSR VLGAAMFMIEIAGVKLLYTGDFSRQEDRHL EIAGVKLLYTGDFSRQEDRHLMAAEIPNIK K L L S R Q 0 1 0 1 0 0 0 1 0 0 2 0 0 1 0 1 1 0 1 0 0 0 9 0 1070.5397 Q9UKF6 Q9UKF6 174 182 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 2 0.0065334 94.302 By MS/MS 3 0 1 1 4734200 0 4734200 0 8508 2178 8852 36415 30553 30553 1 0 2018200 0 LMALLGQALK AQALAGEVSVVPPSRLMALLGQALKWQQHQ VPPSRLMALLGQALKWQQHQGLLPPGMTID R L M L K W 2 0 0 0 0 1 0 1 0 0 4 1 1 0 0 0 0 0 0 0 0 0 10 0 1056.6365 Q2TAY7 Q2TAY7 161 170 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 0.00052474 116.88 By matching By MS/MS By MS/MS 3.67 2.05 3 1 1 3 2 2 1 6 5 92051000 381000 48593000 43077000 8509 1407 8853;8854 36416;36417;36418;36419;36420;36421;36422;36423;36424;36425;36426;36427 30554;30555;30556;30557;30558;30559 30558 628 5 381000 15396000 7672500 LMALYVASHYK TLFCYHKASEVFLQRLMALYVASHYKNSPN FLQRLMALYVASHYKNSPNDLQMLSDAPAH R L M Y K N 2 0 0 0 0 0 0 0 1 0 2 1 1 0 0 1 0 0 2 1 0 0 11 0 1294.6744 Q9H0A0 Q9H0A0 529 539 NAT10 N-acetyltransferase 10 yes yes 3 0.013209 68.536 By matching By MS/MS 1.75 0.829 2 1 1 1 3 40725000 1820900 0 38905000 8510 1959 8855 36428;36429;36430;36431 30560 30560 1 1820900 0 8668500 LMAMQRPGPYDR SSRAEVRTHYDPPRKLMAMQRPGPYDRPGA PRKLMAMQRPGPYDRPGAGRGYNSIGRGAG K L M D R P 1 2 0 1 0 1 0 1 0 0 1 0 2 0 2 0 0 0 1 0 0 0 12 1 1433.6908 P31943;P55795 P31943 201 212 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 3 1.4251E-05 143.79 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 54067000 0 32825000 21242000 8511 722;944 8856 36432;36433;36434 30561;30562 30561 2 0 8837500 2962900 LMATLSNTNPSFVR MFRTVGQLYKESLSRLMATLSNTNPSFVRC RLMATLSNTNPSFVRCIVPNHEKRAGKLEP R L M V R C 1 1 2 0 0 0 0 0 0 0 2 0 1 1 1 2 2 0 0 1 0 0 14 0 1549.7923 Q7Z406 Q7Z406 681 694 MYH14 Myosin-14 yes yes 2 2.2452E-18 195.51 By MS/MS By MS/MS 1 0 2 1 1 13783000 0 9307100 4476300 8512 1531 8857 36435;36436 30563;30564 30563 2 0 4549200 964500 LMATMFQNLFPSINVHK LLVLNSFGPHGMHVKLMATMFQNLFPSINV ATMFQNLFPSINVHKVNLNTIKRCLLIDYN K L M H K V 1 0 2 0 0 1 0 0 1 1 2 1 2 2 1 1 1 0 0 1 0 0 17 0 1990.0169 Q9NQ55 Q9NQ55 155 171 PPAN Suppressor of SWI4 1 homolog yes yes 3 1.6177E-05 99.747 By matching By MS/MS By MS/MS 4 0.632 1 3 1 2 2 1 21259000 728280 10487000 10044000 8513 2032 8858 36437;36438;36439;36440;36441 30565;30566 30565 2 689990 3406400 1640500 LMDGEEPLPMLPSYK IPNFDVREIVNNIRRLMDGEEPLPMLPSYK LMDGEEPLPMLPSYKNFKGTIEELAPNQYV R L M Y K N 0 0 0 1 0 0 2 1 0 0 3 1 2 0 3 1 0 0 1 0 0 0 15 0 1718.8259 P11388 P11388 879 893 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0010817 98.105 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 37061000 492120 12476000 24093000 8514 524 8859;8860 36442;36443;36444;36445 30567;30568;30569 30569 225 3 492120 6098100 5400300 LMDLLQK TIRHGVHMMVATPGRLMDLLQKKMVSLDIC MMVATPGRLMDLLQKKMVSLDICRYLALDE R L M Q K K 0 0 0 1 0 1 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 7 0 859.48372 Q9UJV9 Q9UJV9 324 330 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.039751 83.614 By MS/MS 3 0 1 1 5487500 0 0 5487500 8515 2171 8861 36446 30570 30570 1 0 0 1064300 LMDLQLSDSNFR GGEHVYFAKFLTSEKLMDLQLSDSNFRRHI SEKLMDLQLSDSNFRRHILLQYLILFQYLK K L M F R R 0 1 1 2 0 1 0 0 0 0 3 0 1 1 0 2 0 0 0 0 0 0 12 0 1437.6922 Q96FV9 Q96FV9 307 318 THOC1 THO complex subunit 1 yes yes 2 6.592E-12 176.33 By MS/MS 2 0.816 1 1 1 3 19153000 0 0 19153000 8516 1783 8862 36447;36448;36449 30571 30571 1 0 0 3865200 LMDVGLIAIR SEHLKNPVIAQKIQKLMDVGLIAIR_____ QKIQKLMDVGLIAIR_______________ K L M I R - 1 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 0 0 0 1 0 0 10 0 1099.6424 P31948 P31948 534 543 STIP1 Stress-induced-phosphoprotein 1 yes yes 2 0.035891 76.478 By MS/MS 4 0 1 1 3302100 0 3302100 0 8517 726 8863 36450 30572 30572 1 0 1095900 0 LMEEIMSEK VDVCHDVEKDEKLIRLMEEIMSEKENKTIV DEKLIRLMEEIMSEKENKTIVFVETKRRCD R L M E K E 0 0 0 0 0 0 3 0 0 1 1 1 2 0 0 1 0 0 0 0 0 0 9 0 1108.5144 P17844 P17844 332 340 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 0.0036625 99.442 By matching By MS/MS By MS/MS 3.8 0.748 2 2 1 1 2 2 32352000 4035800 6383400 21932000 8518 588 8864 36451;36452;36453;36454;36455 30573;30574 30573 1 4656400 2433700 3458100 LMEEIMSEKENK VDVCHDVEKDEKLIRLMEEIMSEKENKTIV LIRLMEEIMSEKENKTIVFVETKRRCDELT R L M N K T 0 0 1 0 0 0 4 0 0 1 1 2 2 0 0 1 0 0 0 0 0 0 12 1 1479.6949 P17844 P17844 332 343 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2;3 1.0802E-09 135.55 By MS/MS By MS/MS 2.8 0.4 1 4 3 2 16884000 0 7243500 9640600 8519 588 8865 36456;36457;36458;36459;36460 30575;30576;30577;30578 30578 4 0 3119600 1869800 LMELHGEGSSSGK RKVKMLKKPKFELGKLMELHGEGSSSGKAT GKLMELHGEGSSSGKATGDETGAKVERADG K L M G K A 0 0 0 0 0 0 2 3 1 0 2 1 1 0 0 3 0 0 0 0 0 0 13 0 1330.6187 P61247 P61247 228 240 RPS3A 40S ribosomal protein S3a yes yes 2;3 1.8753E-24 196.11 By MS/MS By MS/MS 5.57 1.18 1 4 7 2 6 8 482080000 0 179860000 302220000 8520 988 8866;8867 36461;36462;36463;36464;36465;36466;36467;36468;36469;36470;36471;36472;36473;36474 30579;30580;30581;30582;30583;30584;30585;30586;30587;30588 30581 472 10 0 61976000 45378000 LMEPAVEPLTQALK RRTRMLPVSGAFHTRLMEPAVEPLTQALKA RLMEPAVEPLTQALKAVDIKKPLVSVYSNV R L M L K A 2 0 0 0 0 1 2 0 0 0 3 1 1 0 2 0 1 0 0 1 0 0 14 0 1538.8378 Q8IVS2 Q8IVS2 273 286 MCAT Malonyl-CoA-acyl carrier protein transacylase, mitochondrial yes yes 2 0.014721 77.062 By matching By MS/MS By MS/MS 4.8 0.748 2 2 1 1 3 1 25965000 5084900 7369800 13510000 8521 1571 8868 36475;36476;36477;36478;36479 30589;30590 30590 2 3967100 2237700 1884500 LMEWTSLQNMR IDGLQKLEEKLTAEKLMEWTSLQNMRETRV TAEKLMEWTSLQNMRETRVDLHLPRFKVEE K L M M R E 0 1 1 0 0 1 1 0 0 0 2 0 2 0 0 1 1 1 0 0 0 0 11 0 1407.6639 P29508;P48594 P29508 266 276 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 1.2206E-13 180.44 By MS/MS By matching 6.1 3.11 1 1 1 1 1 1 1 1 2 9 1 44869000 44423000 0 446070 8522 700 8869 36480;36481;36482;36483;36484;36485;36486;36487;36488;36489 30591;30592;30593;30594;30595;30596;30597;30598;30599 30591 9 46121000 0 975600 LMGDYLLR KVLQARRERQDRISRLMGDYLLRGYRMLGE RQDRISRLMGDYLLRGYRMLGETCADCGTI R L M L R G 0 1 0 1 0 0 0 1 0 0 3 0 1 0 0 0 0 0 1 0 0 0 8 0 979.51609 O60232 O60232 37 44 SSSCA1 Sjoegren syndrome/scleroderma autoantigen 1 yes yes 2 0.0011663 119.57 By MS/MS By MS/MS 7 0 2 1 1 10090000 0 3774300 6316000 8523 222 8870 36490;36491 30600;30601 30601 2 0 2167200 1120700 LMGFASFDSTK EDLEGKTEEEIEMMKLMGFASFDSTKGKKV EMMKLMGFASFDSTKGKKVDGSVNAYAINV K L M T K G 1 0 0 1 0 0 0 1 0 0 1 1 1 2 0 2 1 0 0 0 0 0 11 0 1202.5642 Q8WVK2 Q8WVK2 106 116 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes yes 2 0.0015423 110.14 By matching By MS/MS 7 0 2 1 1 14951000 0 1935600 13016000 8524 1682 8871 36492;36493 30602 30602 1 0 1111500 2309600 LMIEMDGTENK VSKKLNVTEQEKIDKLMIEMDGTENKSKFG KIDKLMIEMDGTENKSKFGANAILGVSLAV K L M N K S 0 0 1 1 0 0 2 1 0 1 1 1 2 0 0 0 1 0 0 0 0 0 11 0 1279.5788 P06733 P06733 93 103 ENO1 Alpha-enolase yes yes 2 0.0003282 130.66 By MS/MS By MS/MS By MS/MS 4.57 0.904 1 2 3 1 3 1 3 60968000 19796000 4880000 36293000 8525 448 8872 36494;36495;36496;36497;36498;36499;36500 30603;30604;30605;30606 30606 4 16042000 1257900 5375700 LMILPDPEKPVR KAIYNKSIIEGPIIKLMILPDPEKPVRLNV IIKLMILPDPEKPVRLNVKYDKDASFLAGG K L M V R L 0 1 0 1 0 0 1 0 0 1 2 1 1 0 3 0 0 0 0 1 0 0 12 1 1406.7956 A6NHR9 A6NHR9 1359 1370 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.0028287 90.653 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 22511000 0 4599400 17911000 8526 15 8873 36501;36502;36503 30607;30608 30607 2 0 2248100 3880300 LMITDAAR VLINPSDEAVSTEVRLMITDAARHKLLVLT AVSTEVRLMITDAARHKLLVLTGQCFENTG R L M A R H 2 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 8 0 889.46914 P46821 P46821 126 133 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.01344 89.55 By MS/MS 1 0 1 1 11656000 0 0 11656000 8527 834 8874 36504 30609 30609 1 0 0 2511500 LMITHIVNQNFK PPPPPAMTNEAGAPRLMITHIVNQNFKSYA APRLMITHIVNQNFKSYAGEKILGPFHKRF R L M F K S 0 0 2 0 0 1 0 0 1 2 1 1 1 1 0 0 1 0 0 1 0 0 12 0 1456.7861 Q9NTJ3 Q9NTJ3 82 93 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 2.2037E-05 152.37 By MS/MS 1 0 1 1 14501000 0 0 14501000 8528 2054 8875 36505 30610 30610 1 0 0 3124400 LMIWDTR LLHESLFGSVADDQKLMIWDTRSNNTSKPS GSVADDQKLMIWDTRSNNTSKPSHSVDAHT K L M T R S 0 1 0 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 0 0 7 0 933.47422 Q09028;Q16576 Q09028 252 258 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.015491 110.61 By MS/MS By MS/MS By MS/MS 4.6 1.43 1 1 3 2 2 1 1 4 5 143500000 5592100 32965000 104950000 8529 1188;1390 8876 36506;36507;36508;36509;36510;36511;36512;36513;36514;36515 30611;30612;30613;30614;30615;30616;30617 30615 7 4362800 9233200 16156000 LMLLESWR EANKTMRNCEEKEERLMLLESWRSFEEEFG CEEKEERLMLLESWRSFEEEFGTASDKERV R L M W R S 0 1 0 0 0 0 1 0 0 0 3 0 1 0 0 1 0 1 0 0 0 0 8 0 1046.5583 Q9BZJ0 Q9BZJ0 752 759 CRNKL1 Crooked neck-like protein 1 yes yes 2 0.00015759 143 By MS/MS 3 0 1 1 3523700 0 3523700 0 8530 1944 8877 36516 30618 30618 1 0 1502200 0 LMLLLEVISGER TQIENIDEDFRDGLKLMLLLEVISGERLPK GLKLMLLLEVISGERLPKPERGKMRVHKIN K L M E R L 0 1 0 0 0 0 2 1 0 1 4 0 1 0 0 1 0 0 0 1 0 0 12 0 1371.7796 O43707;Q08043;P12814;P35609 O43707 84 95 ACTN4;ACTN3;ACTN1;ACTN2 Alpha-actinin-4;Alpha-actinin-3;Alpha-actinin-1;Alpha-actinin-2 no no 2 3.7927E-18 192.91 By MS/MS 2 0 1 1 16127000 0 0 16127000 8531 210;540 8878 36517 30619 30619 1 0 0 3644300 LMLLLEVISGERLPKPER TQIENIDEDFRDGLKLMLLLEVISGERLPK LLEVISGERLPKPERGKMRVHKINNVNKAL K L M E R G 0 2 0 0 0 0 3 1 0 1 5 1 1 0 2 1 0 0 0 1 0 0 18 2 2092.2078 O43707 O43707 84 101 ACTN4 Alpha-actinin-4 yes yes 4 9.7258E-09 111.92 By MS/MS 2 0 1 1 3034600 0 0 3034600 8532 210 8879 36518 30620 30620 1 0 0 685750 LMMDPLSGQNR LVPLFEKAGPIWDLRLMMDPLSGQNRGYAF WDLRLMMDPLSGQNRGYAFITFCGKEAAQE R L M N R G 0 1 1 1 0 1 0 1 0 0 2 0 2 0 1 1 0 0 0 0 0 0 11 0 1260.5955 O43390 O43390 196 206 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 2.6974E-07 159.58 By MS/MS By MS/MS 4 2.21 2 2 4 3 1 1 2 1 11 5 338040000 0 208700000 129340000 8533 195 8880;8881 36519;36520;36521;36522;36523;36524;36525;36526;36527;36528;36529;36530;36531;36532;36533;36534 30621;30622;30623;30624;30625;30626;30627;30628;30629;30630;30631 30627 82 11 0 83789000 25228000 LMMDPLTGLNR LVPLFEKAGPIWDLRLMMDPLTGLNRGYAF WDLRLMMDPLTGLNRGYAFVTFCTKEAAQE R L M N R G 0 1 1 1 0 0 0 1 0 0 3 0 2 0 1 0 1 0 0 0 0 0 11 0 1259.6366 O60506 O60506 193 203 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2 1.2206E-13 180.44 By matching By MS/MS By MS/MS 4.5 1.32 5 4 2 4 1 1 10 5 203240000 2921300 160830000 39483000 8534 227 8882;8883;8884 36535;36536;36537;36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548;36549;36550 30632;30633;30634;30635;30636;30637;30638;30639;30640;30641 30634 93;94 10 3370500 58329000 6512000 LMNIFLK VEDLKEPPKNGISTKLMNIFLKDSITTWEI PKNGISTKLMNIFLKDSITTWEILAVSMSD K L M L K D 0 0 1 0 0 0 0 0 0 1 2 1 1 1 0 0 0 0 0 0 0 0 7 0 877.50955 P01024 P01024 790 796 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.0091427 122.15 By MS/MS 9.5 0.5 1 1 2 11164000 11164000 0 0 8535 371 8885 36551;36552 30642;30643 30642 2 10489000 0 0 LMPTQWR EWSREEEEKLLHLAKLMPTQWRTIAPIIGR EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE K L M W R T 0 1 0 0 0 1 0 0 0 0 1 0 1 0 1 0 1 1 0 0 0 0 7 0 930.47456 Q99459 Q99459 77 83 CDC5L Cell division cycle 5-like protein yes yes 2 0.043144 80.294 By MS/MS By MS/MS 3.5 1.5 1 1 1 1 14751000 0 5512500 9238800 8536 1843 8886 36553;36554 30644;30645 30644 1 0 2482400 1288600 LMQDLDNNSITVK VEISEVLFNELAFFKLMQDLDNNSITVKQR FKLMQDLDNNSITVKQRCKRKIEATGVIQS K L M V K Q 0 0 2 2 0 1 0 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 13 0 1489.7446 Q15154 Q15154 1689 1701 PCM1 Pericentriolar material 1 protein yes yes 2 0.00039487 125.22 By MS/MS By MS/MS 1 0 2 1 1 13934000 0 4223600 9710400 8537 1349 8887 36555;36556 30646;30647 30646 2 0 2064400 2092300 LMQLPDVQK L M Q K 0 0 0 1 0 2 0 0 0 0 2 1 1 0 1 0 0 0 0 1 0 0 9 0 1070.5794 REV__Q9UPN3 yes yes 2 0.0080282 91.626 By MS/MS By matching 2 0 3 2 1 51423000 45570000 5852800 0 + 8538 2345 8888 36557;36558;36559 30648 30648 1 54907000 2635600 0 LMQLVDHR LIKVLEEANQAINPKLMQLVDHRGGGGGGG NQAINPKLMQLVDHRGGGGGGGGRSRYRTT K L M H R G 0 1 0 1 0 1 0 0 1 0 2 0 1 0 0 0 0 0 0 1 0 0 8 0 1010.5331 Q92841 Q92841 548 555 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 0.00045632 129.68 By MS/MS By MS/MS By MS/MS 2.86 0.99 1 1 3 2 1 2 4 136640000 9033900 42169000 85435000 8539 1725 8889 36560;36561;36562;36563;36564;36565;36566 30649;30650;30651;30652;30653 30650 5 10423000 17058000 16501000 LMTDTINEPILLCR TFYEFGEDIPEAPERLMTDTINEPILLCRF RLMTDTINEPILLCRFPVEIKSFYMQRCPE R L M C R F 0 1 1 1 1 0 1 0 0 2 3 0 1 0 1 0 2 0 0 0 0 0 14 0 1687.8637 O43776 O43776 426 439 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 3.9973E-17 187.97 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 10575000 0 2945500 7629500 8540 211 8890 36567;36568 30654;30655 30655 2 0 977490 1479800 LMTEILGR GELNPGEDEVEGLKRLMTEILGRQDGVLQD EVEGLKRLMTEILGRQDGVLQDWVIDDCIG R L M G R Q 0 1 0 0 0 0 1 1 0 1 2 0 1 0 0 0 1 0 0 0 0 0 8 0 931.51609 O43809 O43809 124 131 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 7.0971E-05 148.98 By matching By MS/MS By MS/MS 6.75 0.433 1 3 1 1 2 184390000 2626900 64691000 117070000 8541 213 8891 36569;36570;36571;36572 30656;30657;30658;30659 30659 4 5661600 37146000 20559000 LMTPTLSFLAR RSLQLSAWESSIVDRLMTPTLSFLARSRSA IVDRLMTPTLSFLARSRSAVTLPRNGRDQG R L M A R S 1 1 0 0 0 0 0 0 0 0 3 0 1 1 1 1 2 0 0 0 0 0 11 0 1248.69 Q3KQU3 Q3KQU3 300 310 MAP7D1 MAP7 domain-containing protein 1 yes yes 2 0.00032735 123.35 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 7519100 0 3598700 3920400 8542 1411 8892 36573;36574;36575;36576 30660;30661;30662 30660 3 0 1592400 885940 LMTSSTNNWVLIK RNPKNYLSLAPLFFKLMTSSTNNWVLIKII FKLMTSSTNNWVLIKIIKLFGALTPLEPRL K L M I K I 0 0 2 0 0 0 0 0 0 1 2 1 1 0 0 2 2 1 0 1 0 0 13 0 1505.7912 O14617 O14617 228 240 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.0046603 101.38 By matching By matching By MS/MS 1.33 0.471 2 1 1 1 1 13060000 1182100 2247800 9630300 8543 139 8893 36577;36578;36579 30663 30663 1 1182100 1098700 2176300 LMVEPLQAILIR PLMEIGELALDMWRKLMVEPLQAILIRMLL WRKLMVEPLQAILIRMLLREIKNDRGGEDP K L M I R M 1 1 0 0 0 1 1 0 0 2 3 0 1 0 1 0 0 0 0 1 0 0 12 0 1394.8319 Q13617 Q13617 150 161 CUL2 Cullin-2 yes yes 2 0.0080412 97.431 By MS/MS 3 0 1 1 388700 0 388700 0 8544 1263 8894 36580 30664 30664 1 0 165700 0 LMVHTVATFNSIK DETDSKTASPWKSARLMVHTVATFNSIKEL ARLMVHTVATFNSIKELNERWRSLQQLAEE R L M I K E 1 0 1 0 0 0 0 0 1 1 1 1 1 1 0 1 2 0 0 2 0 0 13 0 1459.7857 Q13813 Q13813 1197 1209 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 7.6045E-45 220.82 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 71670000 0 15864000 55806000 8545 1268 8895;8896 36581;36582;36583;36584;36585 30665;30666;30667;30668 30667 585 4 0 7754100 12054000 LMVNPFAYEEYRK MHGFFMDIRLYHKVKLMVNPFAYEEYRKDK VKLMVNPFAYEEYRKDKIRQKIEETRAQRV K L M R K D 1 1 1 0 0 0 2 0 0 0 1 1 1 1 1 0 0 0 2 1 0 0 13 1 1658.8127 Q9BSC4 Q9BSC4 414 426 NOL10 Nucleolar protein 10 yes yes 3 0.035482 49.31 By matching By MS/MS 2.5 0.5 1 1 1 1 4373600 0 684960 3688600 8546 1895 8897 36586;36587 30669 30669 1 0 308450 715420 LNALGFSLEQR ELNQLKNENRMLKDRLNALGFSLEQRLDNS LKDRLNALGFSLEQRLDNSEKLFGYQSLSP R L N Q R L 1 1 1 0 0 1 1 1 0 0 3 0 0 1 0 1 0 0 0 0 0 0 11 0 1246.667 Q69YQ0 Q69YQ0 271 281 SPECC1L Cytospin-A yes yes 2 0.012005 88.681 By MS/MS 2 0 1 1 5913900 0 5913900 0 8547 1469 8898 36588 30670 30670 1 0 2663100 0 LNALLEPGGVLTISER LMDNVNFCNPSVLDRLNALLEPGGVLTISE NALLEPGGVLTISERGMIDGSTPTITPNPN R L N E R G 1 1 1 0 0 0 2 2 0 1 4 0 0 0 1 1 1 0 0 1 0 0 16 0 1680.941 Q9NU22 Q9NU22 2255 2270 MDN1 Midasin yes yes 2 0.0016452 91.914 By MS/MS 1 0 1 1 1181600 0 1181600 0 8548 2056 8899 36589 30671 30671 1 0 577530 0 LNATNIELATVQPGQNFHMFTK IKSSLIILKQVMEEKLNATNIELATVQPGQ LATVQPGQNFHMFTKEELEEVIKDI_____ K L N T K E 2 0 3 0 0 2 1 1 1 1 2 1 1 2 1 0 3 0 0 1 0 0 22 0 2473.2424 P28066 P28066 210 231 PSMA5 Proteasome subunit alpha type-5 yes yes 3 8.4522E-05 73.675 By MS/MS 7 0 1 1 6194600 0 0 6194600 8549 685 8900 36590 30672 30672 1 0 0 1099200 LNDFASTVR PEPKIIDAALRACRRLNDFASTVRILEVVK LRACRRLNDFASTVRILEVVKDKAGPHKEI R L N V R I 1 1 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1021.5193 P20674 P20674 99 107 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 2 0.012034 87.476 By MS/MS 9 0 1 1 5912900 0 0 5912900 8550 618 8901 36591 30673 30673 1 0 0 1888800 LNDGNEYLFQAK VALDYKKKKHVFKLRLNDGNEYLFQAKDDE KLRLNDGNEYLFQAKDDEEMNTWIQAISSA R L N A K D 1 0 2 1 0 1 1 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 12 0 1410.6779 Q01082 Q01082 2279 2290 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.014492 88.392 By MS/MS 1 0 1 1 15687000 0 0 15687000 8551 1128 8902 36592 30674 30674 1 0 0 3380000 LNDLEDALQQAK AEQRGENALKDAKNKLNDLEDALQQAKEDL KNKLNDLEDALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 2 0 2 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1356.6885 P04264;CON__P04264 P04264 444 455 KRT1 Keratin, type II cytoskeletal 1 yes no 2 4.4801E-222 317.03 By MS/MS By MS/MS By MS/MS 5.63 2.83 3 3 2 3 3 3 3 5 2 3 12 8 10 9598300000 5867000000 229730000 3501600000 + 8552 413 8903 36593;36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607;36608;36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619;36620;36621;36622 30675;30676;30677;30678;30679;30680;30681;30682;30683;30684;30685;30686;30687;30688;30689;30690;30691;30692;30693;30694;30695;30696;30697;30698;30699;30700;30701;30702;30703;30704;30705;30706;30707;30708;30709;30710;30711;30712;30713;30714 30680 39 5356500000 182540000 1005900000 LNDLEDALQQAKEDLAR AEQRGENALKDAKNKLNDLEDALQQAKEDL DLEDALQQAKEDLARLLRDYQELMNTKLAL K L N A R L 3 1 1 3 0 2 2 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 17 1 1940.9803 P04264;CON__P04264 P04264 444 460 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 5.6827E-227 320.64 By MS/MS By MS/MS By MS/MS 4.93 2.6 4 2 4 3 4 3 2 4 3 12 3 14 794910000 531430000 19785000 243690000 + 8553 413 8904 36623;36624;36625;36626;36627;36628;36629;36630;36631;36632;36633;36634;36635;36636;36637;36638;36639;36640;36641;36642;36643;36644;36645;36646;36647;36648;36649;36650;36651 30715;30716;30717;30718;30719;30720;30721;30722;30723;30724;30725;30726;30727;30728;30729;30730;30731;30732;30733;30734;30735;30736;30737;30738;30739;30740;30741;30742 30718 28 422110000 8742100 49660000 LNDLEEALQQAK AEQRGEHALKDARNKLNDLEEALQQAKEDL RNKLNDLEEALQQAKEDLARLLRDYQELMN K L N A K E 2 0 1 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 12 0 1370.7042 CON__P35908;CON__P35908v2;P35908 CON__P35908 448 459 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 6.9216E-258 291.87 By MS/MS By MS/MS By MS/MS 5.09 2.89 6 2 4 3 5 3 4 2 3 3 14 7 14 3434200000 1848100000 87792000 1498300000 + 8554 65;66 8905 36652;36653;36654;36655;36656;36657;36658;36659;36660;36661;36662;36663;36664;36665;36666;36667;36668;36669;36670;36671;36672;36673;36674;36675;36676;36677;36678;36679;36680;36681;36682;36683;36684;36685;36686 30743;30744;30745;30746;30747;30748;30749;30750;30751;30752;30753;30754;30755;30756;30757;30758;30759;30760;30761;30762;30763;30764;30765;30766;30767;30768;30769;30770;30771;30772;30773;30774;30775;30776;30777;30778;30779;30780;30781;30782;30783;30784;30785 30753 43 1685100000 76765000 457630000 LNDLEEALQQAKEDLAR AEQRGEHALKDARNKLNDLEEALQQAKEDL DLEEALQQAKEDLARLLRDYQELMNVKLAL K L N A R L 3 1 1 2 0 2 3 0 0 0 4 1 0 0 0 0 0 0 0 0 0 0 17 1 1954.996 CON__P35908;CON__P35908v2;P35908 CON__P35908 448 464 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 9.103E-110 266.85 By MS/MS By MS/MS By MS/MS 4.82 3.04 2 2 2 1 2 2 6 1 4 147820000 91900000 5490000 50431000 + 8555 65;66 8906 36687;36688;36689;36690;36691;36692;36693;36694;36695;36696;36697 30786;30787;30788;30789;30790;30791;30792;30793;30794;30795 30793 10 69567000 2472200 10750000 LNDSILQATEQR RLSRENRDLKDEIVRLNDSILQATEQRRRA IVRLNDSILQATEQRRRAEENALQQKACGS R L N Q R R 1 1 1 1 0 2 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 12 0 1386.7103 P15924 P15924 1256 1267 DSP Desmoplakin yes yes 2 7.4337E-09 173.64 By MS/MS 5.75 3.11 1 1 1 1 4 31160000 31160000 0 0 8556 572 8907 36698;36699;36700;36701 30796;30797;30798 30796 3 26230000 0 0 LNDTIQLLVR KQMEDGHTLFDYEVRLNDTIQLLVRQSLVL DYEVRLNDTIQLLVRQSLVLPHSTKERDSE R L N V R Q 0 1 1 1 0 1 0 0 0 1 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1183.6925 Q96T88 Q96T88 65 74 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 1.6073E-38 208.72 By MS/MS 2 0.816 1 1 1 3 17000000 0 0 17000000 8557 1841 8908 36702;36703;36704 30799;30800 30800 2 0 0 3571700 LNEAQPSTIATSMR DTTSTELSVVESVFKLNEAQPSTIATSMRD KLNEAQPSTIATSMRDSLIDSLT_______ K L N M R D 2 1 1 0 0 1 1 0 0 1 1 0 1 0 1 2 2 0 0 0 0 0 14 0 1517.7508 P56537 P56537 224 237 EIF6 Eukaryotic translation initiation factor 6 yes yes 2 3.4163E-17 189.13 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 286930000 0 132370000 154560000 8558 951 8909;8910 36705;36706;36707;36708;36709 30801;30802;30803;30804;30805;30806 30803 455 6 0 76009000 27076000 LNEIVGNEDTVSR GHYELPWVEKYRPVKLNEIVGNEDTVSRLE VKLNEIVGNEDTVSRLEVFAREGNVPNIII K L N S R L 0 1 2 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1444.7158 P35250 P35250 47 59 RFC2 Replication factor C subunit 2 yes yes 2 1.7386E-24 196.88 By MS/MS By MS/MS 6 0 2 1 1 21052000 0 4633200 16419000 8559 745 8911 36710;36711 30807;30808 30808 2 0 1603800 2456500 LNEQASEEILK EAIEHIDEVQNEIDRLNEQASEEILKVEQK EIDRLNEQASEEILKVEQKYNKLRQPFFQK R L N L K V 1 0 1 0 0 1 3 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 11 0 1272.6561 Q01105 Q01105 58 68 SET Protein SET yes yes 2 6.3378E-10 171.56 By MS/MS 5.5 1.12 1 1 1 1 4 299630000 0 0 299630000 8560 1130 8912 36712;36713;36714;36715 30809;30810;30811;30812 30810 4 0 0 45301000 LNEQQSVLQR AEEEIKQEMNTLQQKLNEQQSVLQRIAAPN TLQQKLNEQQSVLQRIAAPNMKAMEKLESV K L N Q R I 0 1 1 0 0 3 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1213.6415 Q14683 Q14683 1010 1019 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 3.02E-49 218.06 By matching By MS/MS By MS/MS 1.6 0.49 2 3 1 2 2 68404000 5450200 21591000 41364000 8561 1312 8913 36716;36717;36718;36719;36720 30813;30814;30815;30816 30814 4 6566800 9974500 9057800 LNEQYEHASIHLWDLLEGK EFYKLVDPERDMSLRLNEQYEHASIHLWDL YEHASIHLWDLLEGKEKPVCGTTYKVLKEI R L N G K E 1 0 1 1 0 1 3 1 2 1 4 1 0 0 0 1 0 1 1 0 0 0 19 0 2294.1331 Q14444 Q14444 203 221 CAPRIN1 Caprin-1 yes yes 2;3;4 1.278E-06 105.67 By matching By MS/MS 2.4 1.28 3 3 2 1 1 1 9 65261000 0 1134400 64127000 8562 1301 8914 36721;36722;36723;36724;36725;36726;36727;36728;36729;36730 30817;30818;30819;30820;30821 30820 5 0 554470 13316000 LNESTFDTQITK IVVDAIDVLKSRFTKLNESTFDTQITKKMG FTKLNESTFDTQITKKMGYYKILDVMYSRL K L N T K K 0 0 1 1 0 1 1 0 0 1 1 1 0 1 0 1 3 0 0 0 0 0 12 0 1395.6882 P78527 P78527 1858 1869 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0016173 111.27 By MS/MS By MS/MS 1 0 2 1 1 30896000 0 7119200 23777000 8563 1089 8915 36731;36732 30822;30823 30822 2 0 3479700 5123100 LNEVYEAVK ISPKKSKYMTPMQQKLNEVYEAVKNYTDKR TPMQQKLNEVYEAVKNYTDKRGRRLSAIFL K L N V K N 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 2 0 0 9 0 1063.555 Q86U86 Q86U86 662 670 PBRM1 Protein polybromo-1 yes yes 2 0.019204 82.75 By MS/MS 1 0 1 1 12774000 0 0 12774000 8564 1545 8916 36733 30824 30824 1 0 0 2752300 LNFAVASR RVMMVAKKFLDAGHKLNFAVASRKTFSHEL FLDAGHKLNFAVASRKTFSHELSDFGLEST K L N S R K 2 1 1 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 1 0 0 8 0 876.48175 P30101 P30101 297 304 PDIA3 Protein disulfide-isomerase A3 yes yes 2 4.7896E-06 158.2 By MS/MS 3.5 0.5 1 1 2 11973000 0 0 11973000 8565 711 8917 36734;36735 30825 30825 1 0 0 2050300 LNFGDDIPSALR IANLQRAYSLAKEQRLNFGDDIPSALRIAK EQRLNFGDDIPSALRIAKKKRWNSIEERRI R L N L R I 1 1 1 2 0 0 0 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 12 0 1316.6725 Q9UNE7 Q9UNE7 129 140 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2 0.0062204 100.48 By matching By MS/MS 6 0 2 1 1 16153000 0 2832800 13320000 8566 2204 8918 36736;36737 30826 30826 1 0 980610 1992800 LNFSHGTHEYHAETIK ETLKEMIKSGMNVARLNFSHGTHEYHAETI NFSHGTHEYHAETIKNVRTATESFASDPIL R L N I K N 1 0 1 0 0 0 2 1 3 1 1 1 0 1 0 1 2 0 1 0 0 0 16 0 1882.8962 P14618 P14618 74 89 PKM Pyruvate kinase PKM yes yes 3;4 0.0013813 76.158 By matching By MS/MS By MS/MS 5 2.7 2 2 4 1 2 1 1 1 3 3 8 132170000 14079000 25046000 93047000 8567 559 8919 36738;36739;36740;36741;36742;36743;36744;36745;36746;36747;36748;36749;36750;36751 30827;30828;30829;30830;30831;30832;30833 30831 7 12340000 8518900 19961000 LNGFQLENFTLK VTYSSKDQARQALDKLNGFQLENFTLKVAY LDKLNGFQLENFTLKVAYIPDEMAAQQNPL K L N L K V 0 0 2 0 0 1 1 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 0 1422.7507 O00425 O00425 139 150 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 5.1265E-05 146.11 By MS/MS 4 1 1 1 2 9505800 0 9505800 0 8568 121 8920 36752;36753 30834 30834 1 0 3222200 0 LNGTDPEDVIR GPINFTMFLTMFGEKLNGTDPEDVIRNAFA FGEKLNGTDPEDVIRNAFACFDEEATGTIQ K L N I R N 0 1 1 2 0 0 1 1 0 1 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1227.6095 P19105;O14950;P24844 P19105 93 103 MYL12A;MYL12B;MYL9 Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9 no no 2 3.5013E-05 147.4 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 21997000 0 5851100 16145000 8569 154;652 8921 36754;36755;36756 30835;30836;30837 30835 3 0 3359700 2635700 LNHQLEGLAFQMK LRRSLAPYAQDVQGKLNHQLEGLAFQMKKH GKLNHQLEGLAFQMKKHAEELKAKISAKAE K L N M K K 1 0 1 0 0 2 1 1 1 0 3 1 1 1 0 0 0 0 0 0 0 0 13 0 1527.7868 CON__Q32PJ2 CON__Q32PJ2 234 246 yes yes 2;3 3.598E-11 175.49 By MS/MS By MS/MS 6 0.707 2 4 2 3 5 103190000 28503000 0 74690000 + 8570 81 8922 36757;36758;36759;36760;36761;36762;36763;36764 30838;30839;30840;30841;30842;30843;30844 30844 7 44590000 0 10947000 LNHQLEGLTFQMK LRRSLAPYAQDTQEKLNHQLEGLTFQMKKN EKLNHQLEGLTFQMKKNAEELKARISASAE K L N M K K 0 0 1 0 0 2 1 1 1 0 3 1 1 1 0 0 1 0 0 0 0 0 13 0 1557.7973 P06727 P06727 234 246 APOA4 Apolipoprotein A-IV yes yes 3 0.0080457 70.622 By MS/MS 9 0 1 1 5945200 5945200 0 0 8571 446 8923 36765 30845 30845 1 3337100 0 0 LNHVAAGLVSPSLK AADQLLKLMSTVDPKLNHVAAGLVSPSLKS KLNHVAAGLVSPSLKSDTSSKEIEEAMKRV K L N L K S 2 0 1 0 0 0 0 1 1 0 3 1 0 0 1 2 0 0 0 2 0 0 14 0 1404.8089 Q05519 Q05519 198 211 SRSF11 Serine/arginine-rich splicing factor 11 yes yes 3 0.014746 58.268 By MS/MS 4 0.816 1 1 1 3 16211000 0 16211000 0 8572 1164 8924 36766;36767;36768 30846;30847 30846 2 0 5749000 0 LNIRPLLR TLDELGIHLTKEELKLNIRPLLRLVCKKFF LTKEELKLNIRPLLRLVCKKFFGEFTGFVD K L N L R L 0 2 1 0 0 0 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 8 1 993.64473 Q15029 Q15029 410 417 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 3.5898E-05 158.38 By MS/MS 1.5 0.5 1 1 2 21440000 0 0 21440000 8573 1335 8925 36769;36770 30848 30848 1 0 0 4820600 LNISFPATGCQK ______________________________ ______________________________ K L N Q K L 1 0 1 0 1 1 0 1 0 1 1 1 0 1 1 1 1 0 0 0 0 0 12 0 1334.6653 P62753 P62753 3 14 RPS6 40S ribosomal protein S6 yes yes 2 1.8888E-05 153.05 By matching By MS/MS 6.67 0.943 2 1 1 2 50488000 0 4480100 46008000 8574 1032 8926 36771;36772;36773 30849 30849 1 0 1550800 6893200 LNIWDWK SPDMSYVISGDGNGKLNIWDWKTTKLYSRF ISGDGNGKLNIWDWKTTKLYSRFKAHDKVC K L N W K T 0 0 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 2 0 0 0 0 7 0 973.50215 O60508 O60508 532 538 CDC40 Pre-mRNA-processing factor 17 yes yes 2 0.039108 84.244 By MS/MS 3 0 1 1 2651300 0 0 2651300 8575 228 8927 36774 30850 30850 1 0 0 514240 LNLAFVANLFNK RQFVTPADVVSGNPKLNLAFVANLFNKYPA NPKLNLAFVANLFNKYPALTKPENQDIDWT K L N N K Y 2 0 3 0 0 0 0 0 0 0 3 1 0 2 0 0 0 0 0 1 0 0 12 0 1362.766 P13797 P13797 365 376 PLS3 Plastin-3 yes yes 2 0.0010245 117.89 By MS/MS 3 0 1 1 3951000 0 0 3951000 8576 551 8928 36775 30851 30851 1 0 0 766300 LNLAQFLNEDLS RLPRRAKTAALEKSKLNLAQFLNEDLS___ KSKLNLAQFLNEDLS_______________ K L N L S - 1 0 2 1 0 1 1 0 0 0 4 0 0 1 0 1 0 0 0 0 0 0 12 0 1375.6983 Q9BPX3 Q9BPX3 1004 1015 NCAPG Condensin complex subunit 3 yes yes 2 0.026829 80.219 By MS/MS 2 0 1 1 7897300 0 0 7897300 8577 1873 8929 36776 30852 30852 1 0 0 1784600 LNLDSIIGR ______________________________ MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL K L N G R L 0 1 1 1 0 0 0 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 9 0 999.57129 P62136 P62136 7 15 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2 2.867E-23 186.09 By matching By MS/MS By MS/MS 5.17 1.34 1 1 1 2 1 2 1 3 40197000 3832600 5307400 31057000 8578 1006 8930 36777;36778;36779;36780;36781;36782 30853;30854;30855;30856 30855 4 3619400 1837200 4655600 LNLQFLTLHDYLLR PTEYYSGEGCLALPKLNLQFLTLHDYLLRN KLNLQFLTLHDYLLRNFNLFRLESTYEIRQ K L N L R N 0 1 1 1 0 1 0 0 1 0 6 0 0 1 0 0 1 0 1 0 0 0 14 0 1757.9828 O60306 O60306 455 468 AQR Intron-binding protein aquarius yes yes 2;3 4.8062E-05 160.18 By MS/MS 1.8 0.748 2 2 1 5 27242000 0 0 27242000 8579 225 8931 36783;36784;36785;36786;36787 30857;30858 30858 2 0 0 5974500 LNLSQVR VGTPGRLDDLVSTGKLNLSQVRFLVLDEAD DDLVSTGKLNLSQVRFLVLDEADGLLSQGY K L N V R F 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 828.48175 Q92499 Q92499 359 365 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 0.0072048 124.89 By MS/MS 3 0 1 1 13293000 0 13293000 0 8580 1705 8932 36788 30859 30859 1 0 5667000 0 LNLVEAFVEDAELR WIKQPLMDKNRIEERLNLVEAFVEDAELRQ RLNLVEAFVEDAELRQTLQEDLLRRFPDLN R L N L R Q 2 1 1 1 0 0 3 0 0 0 3 0 0 1 0 0 0 0 0 2 0 0 14 0 1616.841 P43246 P43246 360 373 MSH2 DNA mismatch repair protein Msh2 yes yes 2;3 0.00028391 128.67 By MS/MS 2.67 0.943 2 1 3 4646300 0 0 4646300 8581 813 8933 36789;36790;36791 30860;30861;30862 30861 2 0 0 965810 LNLYELK LATDVQTVAQRLKFRLNLYELKEGRQIKPY VAQRLKFRLNLYELKEGRQIKPYTLMSMVA R L N L K E 0 0 1 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 7 0 891.50657 P49720 P49720 71 77 PSMB3 Proteasome subunit beta type-3 yes yes 2 0.039108 84.244 By matching By MS/MS 7 0 2 1 1 9815700 0 5941900 3873800 8582 862 8934 36792;36793 30863 30863 1 0 3411900 687380 LNMATLR MGGEEAEIRFCEHKRLNMATLRMTWEAKVQ IRFCEHKRLNMATLRMTWEAKVQLKEILIN R L N L R M 1 1 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 7 0 817.44801 Q08211 Q08211 945 951 DHX9 ATP-dependent RNA helicase A yes yes 2 2.6798E-06 163.84 By matching By MS/MS By MS/MS 2.33 0.943 1 3 1 1 1 3 2 90560000 7525700 31587000 51447000 8583 1182 8935 36794;36795;36796;36797;36798;36799 30864;30865;30866 30864 3 9067500 13872000 11394000 LNNELLAK FILPDLGKLQQLEDKLNNELLAKFLEKKYA LQQLEDKLNNELLAKFLEKKYASSANLHLP K L N A K F 1 0 2 0 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 8 0 913.52328 CON__P34955 CON__P34955 289 296 yes yes 2 0.0010025 121.85 By MS/MS By matching 6.5 1.66 1 1 2 3 1 34162000 28571000 0 5590600 + 8584 64 8936 36800;36801;36802;36803 30867 30867 1 23053000 0 857100 LNNLVLFDK KAKKKKWSKGKVRDKLNNLVLFDKATYDKL GKVRDKLNNLVLFDKATYDKLCKEVPNYKL K L N D K A 0 0 2 1 0 0 0 0 0 0 3 1 0 1 0 0 0 0 0 1 0 0 9 0 1074.6073 P62851 P62851 44 52 RPS25 40S ribosomal protein S25 yes yes 2 0.00052908 128.93 By matching By MS/MS By MS/MS 7.86 0.639 2 4 1 1 2 4 91215000 3222400 33381000 54612000 8585 1039 8937 36804;36805;36806;36807;36808;36809;36810 30868;30869;30870;30871;30872 30871 4 2766500 16016000 9969100 LNPDLFITGSYDHTVK FKEHSDYVRCGCASKLNPDLFITGSYDHTV NPDLFITGSYDHTVKMFDARTSESVLSVEH K L N V K M 0 0 1 2 0 0 0 1 1 1 2 1 0 1 1 1 2 0 1 1 0 0 16 0 1818.9152 Q8TED0 Q8TED0 175 190 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2;3 1.7537E-06 162.31 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 2 1 58059000 3521100 26840000 27698000 8586 1665 8938 36811;36812;36813;36814 30873;30874;30875 30873 3 4062500 8907200 4523900 LNQALLDLHALGSAR KTPDAMKAAMALEKKLNQALLDLHALGSAR LNQALLDLHALGSARTDPHLCDFLETHFLD K L N A R T 3 1 1 1 0 1 0 1 1 0 5 0 0 0 0 1 0 0 0 0 0 0 15 0 1590.8842 P02792 P02792 107 121 FTL Ferritin light chain yes yes 3 0.0019383 75.961 By matching By MS/MS By MS/MS 7 0 3 1 1 1 8115200 654390 2079400 5381400 8587 402 8939 36815;36816;36817 30876;30877 30877 2 1410400 1194000 954900 LNQDQLDAVSK GKLDDYQERMNKGERLNQDQLDAVSKYQEV KGERLNQDQLDAVSKYQEVTNNLEFAKELQ R L N S K Y 1 0 1 2 0 2 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 11 0 1229.6252 Q14444 Q14444 88 98 CAPRIN1 Caprin-1 yes yes 2 1.5596E-13 179.09 By matching By MS/MS By MS/MS 2.8 0.748 2 2 1 1 3 1 118170000 6274100 65092000 46805000 8588 1301 8940 36818;36819;36820;36821;36822 30878;30879;30880 30878 3 7559500 27252000 9078000 LNQLKPGLQYK EEKAEPPQAMNALMRLNQLKPGLQYKLVSQ ALMRLNQLKPGLQYKLVSQTGPVHAPIFTM R L N Y K L 0 0 1 0 0 2 0 1 0 0 3 2 0 0 1 0 0 0 1 0 0 0 11 1 1300.7503 Q12906 Q12906 409 419 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 4.978E-13 182.73 By MS/MS By MS/MS 2.88 1.28 3 4 4 4 2 9 8 612940000 0 245820000 367120000 8589 1211 8941 36823;36824;36825;36826;36827;36828;36829;36830;36831;36832;36833;36834;36835;36836;36837;36838;36839 30881;30882;30883;30884;30885;30886;30887;30888;30889;30890;30891;30892;30893;30894 30884 14 0 104280000 77579000 LNQPPEDGISSVK ______________________________ FKLNQPPEDGISSVKFSPNTSQFLLVSSWD K L N V K F 0 0 1 1 0 1 1 1 0 1 1 1 0 0 2 2 0 0 0 1 0 0 13 0 1382.7042 O43684 O43684 9 21 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 0.014888 83.081 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 32225000 0 7144700 25080000 8590 209 8942 36840;36841;36842 30895;30896;30897 30895 3 0 2473300 3624500 LNQPQPDFTK CSLHGKKCTVSVETRLNQPQPDFTKNRSGF SVETRLNQPQPDFTKNRSGFILSVPGN___ R L N T K N 0 0 1 1 0 2 0 0 0 0 1 1 0 1 2 0 1 0 0 0 0 0 10 0 1186.5982 O94832 O94832 985 994 MYO1D Unconventional myosin-Id yes yes 2 0.049902 70.816 By MS/MS 2 0 1 1 0 0 0 0 8591 299 8943 36843 30898 30898 1 0 0 0 LNQYFQK AGLHGNWTLENAKARLNQYFQKEKIQGEYK TLENAKARLNQYFQKEKIQGEYKYTQVGPD R L N Q K E 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 0 7 0 939.48142 Q08211 Q08211 185 191 DHX9 ATP-dependent RNA helicase A yes yes 2 0.011301 118.42 By MS/MS 1.5 0.5 1 1 2 30888000 0 30888000 0 8592 1182 8944 36844;36845 30899;30900 30900 2 0 14243000 0 LNRLPAAGVGDMVMATVK AKNLYIISVKGIKGRLNRLPAAGVGDMVMA LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L N V K K 3 1 1 1 0 0 0 2 0 0 2 1 2 0 1 0 1 0 0 3 0 0 18 1 1841.9856 P62829 P62829 49 66 RPL23 60S ribosomal protein L23 yes yes 3 1.625E-06 108.49 By MS/MS By matching 7.8 0.4 1 4 4 1 82363000 0 69984000 12380000 8593 1036 8945;8946;8947 36846;36847;36848;36849;36850 30901;30902;30903;30904;30905 30903 493;494 5 0 32185000 1897900 LNSGVDYR SDFLKQIIGRPVVVKLNSGVDYRGVLACLD GRPVVVKLNSGVDYRGVLACLDGYMNIALE K L N Y R G 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 1 0 0 8 0 922.45084 P62312 P62312 24 31 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.022387 82.452 By matching By MS/MS 10 0 2 1 1 12533000 0 637370 11896000 8594 1021 8948 36851;36852 30906 30906 1 0 3224600 26017000 LNSIMQASLPVQEYLFMPFDQAHK EIEVKKEYLSSLQPRLNSIMQASLPVQEYL PVQEYLFMPFDQAHKQYETARHLPPPLYVL R L N H K Q 2 0 1 1 0 3 1 0 1 1 3 1 2 2 2 2 0 0 1 1 0 0 24 0 2806.3822 Q13769 Q13769 233 256 THOC5 THO complex subunit 5 homolog yes yes 3 1.134E-07 82.885 By MS/MS 3 0 1 1 27893000 0 0 27893000 8595 1267 8949 36853 30907 30907 1 0 0 5410000 LNSKPPNIGFK HKKIIENELEGFGIRLNSKPPNIGFKKKDK FGIRLNSKPPNIGFKKKDKGGINLTATCPQ R L N F K K 0 0 2 0 0 0 0 1 0 1 1 2 0 1 2 1 0 0 0 0 0 0 11 1 1213.6819 Q9Y295 Q9Y295 172 182 DRG1 Developmentally-regulated GTP-binding protein 1 yes yes 3 0.062356 46.64 By MS/MS By matching 5.67 0.471 1 2 2 1 9043500 0 8352600 690900 8596 2239 8950 36854;36855;36856 30908 30908 1 0 2286700 103370 LNSNTQVVLLSATMPSDVLEVTK LSRGFKDQIYDIFQKLNSNTQVVLLSATMP LLSATMPSDVLEVTKKFMRDPIRILVKKEE K L N T K K 1 0 2 1 0 1 1 0 0 0 4 1 1 0 1 3 3 0 0 4 0 0 23 0 2458.2989 P60842 P60842 203 225 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2 5.0787E-19 123.36 By MS/MS 5 0 1 1 1956900 0 1956900 0 8597 967 8951 36857 30909 30909 1 0 504420 0 LNSPLSLPFVPGR PRWVPPSPPPPYDSRLNSPLSLPFVPGRVP SRLNSPLSLPFVPGRVPPSSFSRFSQAVIL R L N G R V 0 1 1 0 0 0 0 1 0 0 3 0 0 1 3 2 0 0 0 1 0 0 13 0 1395.7874 Q99935 Q99935 57 69 PROL1 Proline-rich protein 1;Opiorphin yes yes 2 0.0012287 111.86 By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 9 44977000 44977000 0 0 8598 1869 8952 36858;36859;36860;36861;36862;36863;36864;36865;36866 30910;30911;30912;30913;30914 30911 5 51028000 0 0 LNTDPMLLQFFK NRMNYFQVAKTVAQRLNTDPMLLQFFKSQG AQRLNTDPMLLQFFKSQGYRDGPGNPLRHN R L N F K S 0 0 1 1 0 1 0 0 0 0 3 1 1 2 1 0 1 0 0 0 0 0 12 0 1465.7639 Q93009 Q93009 830 841 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.00069029 121.93 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 12580000 0 5933900 6646100 8599 1738 8953 36867;36868;36869 30915;30916 30916 2 0 2672100 1354800 LNTGILNK LFMENKQPEDDLFDRLNTGILNKHLQDLME EDDLFDRLNTGILNKHLQDLMEGLTAKVFR R L N N K H 0 0 2 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 8 0 871.51272 P11387 P11387 568 575 TOP1 DNA topoisomerase 1 yes yes 2 2.452E-20 192.56 By matching By MS/MS 2.17 1.07 2 2 1 1 2 4 120310000 0 15460000 104850000 8600 523 8954 36870;36871;36872;36873;36874;36875 30917;30918;30919 30918 3 0 7078700 22089000 LNTIPLFVQLLYSSVENIQR HILARDPMNRMEIFRLNTIPLFVQLLYSSV LFVQLLYSSVENIQRVAAGVLCELAQDKEA R L N Q R V 0 1 2 0 0 2 1 0 0 2 4 0 0 1 1 2 1 0 1 2 0 0 20 0 2346.2947 P14923 P14923 583 602 JUP Junction plakoglobin yes yes 2;3 0.00013233 74.029 By MS/MS 2.2 0.748 1 2 2 5 9740500 0 0 9740500 8601 567 8955 36876;36877;36878;36879;36880 30920;30921;30922;30923 30921 3 0 0 2132900 LNTLLQR MMVAGFKKQMADTGKLNTLLQRAPQCLGKF KQMADTGKLNTLLQRAPQCLGKFIEIAARK K L N Q R A 0 1 1 0 0 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 7 0 856.51305 Q00839 Q00839 552 558 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 4.9561E-18 189.97 By MS/MS By MS/MS 2.78 1.31 2 2 2 2 1 4 5 407940000 0 182770000 225180000 8602 1127 8956 36881;36882;36883;36884;36885;36886;36887;36888;36889 30924;30925;30926;30927;30928;30929;30930 30925 7 0 80353000 47653000 LNTQEIFDDWAR EGQKLKQDGDSFRMKLNTQEIFDDWARKVQ RMKLNTQEIFDDWARKVQQRNLGVSGRIFT K L N A R K 1 1 1 2 0 1 1 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 12 0 1506.7103 Q14204 Q14204 693 704 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0015196 112.36 By MS/MS 1 0 1 1 3743800 0 0 3743800 8603 1292 8957 36890 30931 30931 1 0 0 806660 LNVITVGPR ADVLTTGAGNPVGDKLNVITVGPRGPLLVQ NPVGDKLNVITVGPRGPLLVQDVVFTDEMA K L N P R G 0 1 1 0 0 0 0 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 9 0 967.58147 P04040 P04040 39 47 CAT Catalase yes yes 2 0.00069605 132.08 By MS/MS By matching 5.25 4.26 2 1 1 3 1 23508000 15525000 0 7982400 8604 408 8958 36891;36892;36893;36894 30932;30933 30932 2 17267000 0 1719900 LNVLANVIR NGVDYVIMGMPHRGRLNVLANVIRKELEQI MPHRGRLNVLANVIRKELEQIFCQFDSKLE R L N I R K 1 1 2 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 9 0 1010.6237 Q02218;Q9ULD0 Q02218 315 323 OGDH;OGDHL 2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial yes no 2 4.6662E-05 148.33 By MS/MS 2 0 1 1 2478600 0 0 2478600 8605 1144 8959 36895 30934 30934 1 0 0 560110 LNVTEQEK EHINKTIAPALVSKKLNVTEQEKIDKLMIE PALVSKKLNVTEQEKIDKLMIEMDGTENKS K L N E K I 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 959.49238 P06733 P06733 82 89 ENO1 Alpha-enolase yes yes 2 0.03878 75.738 By MS/MS 5 0 1 1 2372100 0 2372100 0 8606 448 8960 36896 30935 30935 1 0 611450 0 LNVWDLSK PHNETILASSGTDRRLNVWDLSKIGEEQSP SSGTDRRLNVWDLSKIGEEQSPEDAEDGPP R L N S K I 0 0 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 8 0 973.52328 Q09028;Q16576 Q09028 342 349 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.00027232 134.08 By matching By matching By MS/MS 4.25 0.433 3 1 1 1 2 45128000 3266000 5128000 36734000 8607 1188;1390 8961 36897;36898;36899;36900 30936;30937 30937 2 2548000 1701800 5426800 LNYGIPAIVK TSRHPEAEMAQNSVRLNYGIPAIVKLLNQP QNSVRLNYGIPAIVKLLNQPNQWPLVKATI R L N V K L 1 0 1 0 0 0 0 1 0 2 1 1 0 0 1 0 0 0 1 1 0 0 10 0 1086.6437 P14923 P14923 478 487 JUP Junction plakoglobin yes yes 2 0.0025855 105.14 By MS/MS By matching 5.6 3.07 1 1 1 1 1 2 1 2 8 2 60515000 55898000 0 4617200 8608 567 8962 36901;36902;36903;36904;36905;36906;36907;36908;36909;36910 30938;30939;30940;30941 30938 4 58179000 0 3607200 LNYLDPR TDREENKQIALGTSKLNYLDPRITVAWCKK QIALGTSKLNYLDPRITVAWCKKWGVPIEK K L N P R I 0 1 1 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 889.46577 P11387;Q969P6 P11387 721 727 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 0.031202 91.626 By MS/MS 2.5 0.5 1 1 2 21382000 0 21382000 0 8609 523 8963 36911;36912 30942;30943 30942 2 0 9435700 0 LPAAGVGDMVMATVK LYIISVKGIKGRLNRLPAAGVGDMVMATVK LPAAGVGDMVMATVKKGKPELRKKVHPAVV R L P V K K 3 0 0 1 0 0 0 2 0 0 1 1 2 0 1 0 1 0 0 3 0 0 15 0 1458.7575 P62829 P62829 52 66 RPL23 60S ribosomal protein L23 yes yes 2;3 8.0525E-26 205.46 By MS/MS By MS/MS By MS/MS 7.67 1.44 1 1 2 5 12 4 2 2 13 12 2272100000 21723000 972200000 1278200000 8610 1036 8964;8965;8966 36913;36914;36915;36916;36917;36918;36919;36920;36921;36922;36923;36924;36925;36926;36927;36928;36929;36930;36931;36932;36933;36934;36935;36936;36937;36938;36939 30944;30945;30946;30947;30948;30949;30950;30951;30952;30953;30954;30955;30956;30957;30958;30959;30960;30961;30962;30963;30964;30965;30966;30967;30968;30969;30970 30955 493;494 27 18650000 446180000 231250000 LPAAGVGDMVMATVKK LYIISVKGIKGRLNRLPAAGVGDMVMATVK PAAGVGDMVMATVKKGKPELRKKVHPAVVI R L P K K G 3 0 0 1 0 0 0 2 0 0 1 2 2 0 1 0 1 0 0 3 0 0 16 1 1586.8524 P62829 P62829 52 67 RPL23 60S ribosomal protein L23 yes yes 2;3 0.0007586 87.719 By MS/MS By MS/MS 8 0 3 2 1 27513000 0 12737000 14776000 8611 1036 8967 36940;36941;36942 30971;30972;30973 30972 3 0 5794800 2265300 LPAELGPQLLHKIIDGICGR ______________________________ GPQLLHKIIDGICGRAYPVYQDYHTVWESE K L P G R A 1 1 0 1 1 1 1 3 1 3 4 1 0 0 2 0 0 0 0 0 0 0 20 1 2199.2198 Q9NX08 Q9NX08 15 34 COMMD8 COMM domain-containing protein 8 yes yes 3;4 0.0060145 48.848 By MS/MS By matching 6 0 4 2 2 71779000 0 16857000 54921000 8612 2082 8968 36943;36944;36945;36946 30974;30975 30975 2 0 5835500 8216800 LPAELQELPGLSHQYWSAPSDK PDILCLQETKCSENKLPAELQELPGLSHQY LPGLSHQYWSAPSDKEGYSGVGLLSRQCPL K L P D K E 2 0 0 1 0 2 2 1 1 0 4 1 0 0 3 3 0 1 1 0 0 0 22 0 2465.2227 P27695 P27695 104 125 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 3 0.0012999 57.826 By MS/MS By matching 6 0 2 1 1 31883000 0 3057300 28825000 8613 680 8969 36947;36948 30976 30976 1 0 1058300 4312600 LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSR PDILCLQETKCSENKLPAELQELPGLSHQY PSDKEGYSGVGLLSRQCPLKVSYGIGDEEH K L P S R Q 2 1 0 1 0 2 3 4 1 0 6 1 0 0 3 5 0 1 2 1 0 0 33 1 3583.7947 P27695 P27695 104 136 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 4 0.022347 23.77 By MS/MS 5.5 0.5 1 1 2 14008000 0 0 14008000 8614 680 8970 36949;36950 30977 30977 1 0 0 2037500 LPAIALDLLR NVLKMAASSVKKDRKLPAIALDLLRLALKE KKDRKLPAIALDLLRLALKEDKFPRFWKEV K L P L R L 2 1 0 1 0 0 0 0 0 1 4 0 0 0 1 0 0 0 0 0 0 0 10 0 1093.6859 Q9BQG0 Q9BQG0 264 273 MYBBP1A Myb-binding protein 1A yes yes 2 0.034544 76.827 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 13396000 0 4185200 9210400 8615 1885 8971 36951;36952;36953;36954;36955 30978;30979;30980;30981 30980 4 0 1911200 1992200 LPALGEAHVSPEVATADK PLAQGEPGREDLPTRLPALGEAHVSPEVAT LGEAHVSPEVATADKAPLQAPPVLEVAAEC R L P D K A 4 0 0 1 0 0 2 1 1 0 2 1 0 0 2 1 1 0 0 2 0 0 18 0 1803.9367 Q9P1Y6 Q9P1Y6 1220 1237 PHRF1 PHD and RING finger domain-containing protein 1 yes yes 3 0.068406 36.214 By MS/MS 2 0 1 1 0 0 0 0 8616 2119 8972 36956 30982 30982 1 0 0 0 LPANHPLLTGQR VQVWPVRQVRPVTEKLPANHPLLTGQRVLD TEKLPANHPLLTGQRVLDALFPCVQGGTTA K L P Q R V 1 1 1 0 0 1 0 1 1 0 3 0 0 0 2 0 1 0 0 0 0 0 12 0 1315.7361 P38606 P38606 221 232 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 3 0.00089597 103.44 By matching By MS/MS By matching 3.33 0.471 2 1 1 1 1 7311400 1715600 4832300 763480 8617 773 8973 36957;36958;36959 30983 30983 1 1979400 2060000 124700 LPAVSSVACGASVGYAVTK GEGAEEKSIPTLISRLPAVSSVACGASVGY SSVACGASVGYAVTKDGRVFAWGMGTNYQL R L P T K D 4 0 0 0 1 0 0 2 0 0 1 1 0 0 1 3 1 0 1 4 0 0 19 0 1835.9451 P18754 P18754 344 362 RCC1 Regulator of chromosome condensation yes yes 2;3 4.9348E-10 160.05 By MS/MS 4.67 0.471 1 2 3 33856000 0 0 33856000 8618 599 8974 36960;36961;36962 30984;30985;30986;30987 30986 4 0 0 4798900 LPDGTSLTQTFR PPTKREYDQCRIQVRLPDGTSLTQTFRARE QVRLPDGTSLTQTFRAREQLAAVRLYVELH R L P F R A 0 1 0 1 0 1 0 1 0 0 2 0 0 1 1 1 3 0 0 0 0 0 12 0 1334.683 Q04323 Q04323 220 231 UBXN1 UBX domain-containing protein 1 yes yes 2 0.00013091 137.46 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 17375000 0 6939900 10435000 8619 1158 8975 36963;36964;36965 30988;30989;30990 30990 2 0 2402400 1516700 LPDMLNAEIVLGNVQNAK LLNQQLPIESQMVSKLPDMLNAEIVLGNVQ MLNAEIVLGNVQNAKDAVNWLGYAYLYIRM K L P A K D 2 0 3 1 0 1 1 1 0 1 3 1 1 0 1 0 0 0 0 2 0 0 18 0 1938.0244 O75643 O75643 897 914 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 5.5179E-96 252.37 By MS/MS By MS/MS 1.43 0.728 5 1 1 4 3 50839000 0 17777000 33062000 8620 277 8976;8977 36966;36967;36968;36969;36970;36971;36972 30991;30992;30993;30994;30995;30996 30996 109 6 0 8689200 7086600 LPDVYGVFQFK TFLKKKGGKYSVQFKLPDVYGVFQFKVDYN VQFKLPDVYGVFQFKVDYNRLGYTHLYSST K L P F K V 0 0 0 1 0 1 0 1 0 0 1 1 0 2 1 0 0 0 1 2 0 0 11 0 1311.6863 P39656 P39656 381 391 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes yes 2 0.0057791 99.442 By matching By MS/MS 4.5 0.5 1 1 1 1 7033300 2521700 0 4511600 8621 779 8978 36973;36974 30997 30997 1 1967400 0 629290 LPDYSSIEIMR DDFLPSVMTCVNYLKLPDYSSIEIMREKLL NYLKLPDYSSIEIMREKLLIAAREGQQSFH K L P M R E 0 1 0 1 0 0 1 0 0 2 1 0 1 0 1 2 0 0 1 0 0 0 11 0 1322.654 Q14669 Q14669 1965 1975 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.028445 79.489 By MS/MS 1 0 1 1 3904100 0 0 3904100 8622 1308 8979 36975 30998 30998 1 0 0 841190 LPEASQSPLVLK LPINSAAIKAECTARLPEASQSPLVLKQAV TARLPEASQSPLVLKQAVRKPLEAVLRYLE R L P L K Q 1 0 0 0 0 1 1 0 0 0 3 1 0 0 2 2 0 0 0 1 0 0 12 0 1280.734 Q13330 Q13330 516 527 MTA1 Metastasis-associated protein MTA1 yes yes 2 0.00040029 127.83 By MS/MS 3 0 1 1 13643000 0 13643000 0 8623 1239 8980 36976 30999 30999 1 0 5815900 0 LPEDPLLSGLLDSPALK LQLELAQVLAQERPKLPEDPLLSGLLDSPA EDPLLSGLLDSPALKACLDTAVENMPSLKM K L P L K A 1 0 0 2 0 0 1 1 0 0 6 1 0 0 3 2 0 0 0 0 0 0 17 0 1776.9873 P49327 P49327 1209 1225 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 2.7888E-27 201.04 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 13075000 0 5464100 7611000 8624 853 8981 36977;36978;36979 31000;31001 31000 2 0 2614100 1639900 LPEELGRDQNTVETLQR DAKEIFGRIQDKHKKLPEELGRDQNTVETL EELGRDQNTVETLQRMHTTFEHDIQALGTQ K L P Q R M 0 2 1 1 0 2 3 1 0 0 3 0 0 0 1 0 2 0 0 1 0 0 17 1 1997.0178 Q01082 Q01082 1828 1844 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.010612 54.292 By MS/MS 1 0 1 1 4246700 0 4246700 0 8625 1128 8982 36980 31002 31002 1 0 2075700 0 LPEGDLGKEIEQK LSLLQDSGEVREDLRLPEGDLGKEIEQKYD LRLPEGDLGKEIEQKYDCGEEILITVLSAM R L P Q K Y 0 0 0 1 0 1 3 2 0 1 2 2 0 0 1 0 0 0 0 0 0 0 13 1 1454.7617 P63241;Q6IS14 P63241 114 126 EIF5A;EIF5AL1 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like yes no 3 0.048994 48.467 By MS/MS 8 0 1 1 5742100 0 0 5742100 8626 1067 8983 36981 31003 31003 1 0 0 880310 LPEHPEGGEPEDDEAPAK RHSEVETDSKKKKMKLPEHPEGGEPEDDEA HPEGGEPEDDEAPAKGKFNWKGTIKAILKQ K L P A K G 2 0 0 2 0 0 5 2 1 0 1 1 0 0 4 0 0 0 0 0 0 0 18 0 1915.8436 Q9NX58 Q9NX58 289 306 LYAR Cell growth-regulating nucleolar protein yes yes 3 0.0027229 62.203 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 32103000 0 3912600 28190000 8627 2086 8984 36982;36983;36984 31004;31005;31006;31007 31005 4 0 1008500 4134400 LPEKWESVK IIENIVAVTKGLSEKLPEKWESVKLLFVKT KGLSEKLPEKWESVKLLFVKTEKSAALPIF K L P V K L 0 0 0 0 0 0 2 0 0 0 1 2 0 0 1 1 0 1 0 1 0 0 9 1 1114.6023 O76021 O76021 241 249 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.00079111 142.56 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 69908000 0 26440000 43468000 8628 295 8985 36985;36986;36987 31008;31009;31010 31009 3 0 9548900 8430800 LPELQVYTR RKVRCILTGHELPCRLPELQVYTRGKKYQR HELPCRLPELQVYTRGKKYQRLVRASPAFD R L P T R G 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 1 0 1 1 0 0 9 0 1117.6132 Q15527 Q15527 40 48 SURF2 Surfeit locus protein 2 yes yes 2 0.052257 70.856 By MS/MS By matching 6 0 2 1 1 4645000 0 2761300 1883700 8629 1373 8986 36988;36989 31011 31011 1 0 955850 281820 LPEMEPLVPR PTVDSTQQPNPLPLRLPEMEPLVPRVKEVK PLPLRLPEMEPLVPRVKEVKSAQETPESSL R L P P R V 0 1 0 0 0 0 2 0 0 0 2 0 1 0 3 0 0 0 0 1 0 0 10 0 1179.6322 Q15154 Q15154 1908 1917 PCM1 Pericentriolar material 1 protein yes yes 2 0.00064115 132.76 By MS/MS 1.5 0.5 1 1 2 10553000 0 0 10553000 8630 1349 8987 36990;36991 31012 31012 1 0 0 2300100 LPEQPVDVPSEIADSSMTRPQELPELPK TTMDFPESSAIEALRLPEQPVDVPSEIADS DSSMTRPQELPELPKTTALELQESSVASAM R L P P K T 1 1 0 2 0 2 4 0 0 1 3 1 1 0 6 3 1 0 0 2 0 0 28 1 3101.5591 P18583 P18583 339 366 SON Protein SON yes yes 3;4 7.3232E-11 85 By MS/MS By MS/MS 1 0 3 1 2 29927000 0 12194000 17732000 8631 596 8988 36992;36993;36994 31013;31014;31015 31013 3 0 5960400 3820700 LPEVQQATK TSVQAKGTNKLRKPKLPEVQQATKAPESSD KLRKPKLPEVQQATKAPESSDDSEDSSDSS K L P T K A 1 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 9 0 1012.5553 Q13428 Q13428 1130 1138 TCOF1 Treacle protein yes yes 2 0.00091832 110.38 By MS/MS 1 0 1 1 5379900 0 0 5379900 8632 1247 8989 36995 31016 31016 1 0 0 1159200 LPEYTLSQEGGPAHK PIGSLQELAIHHGWRLPEYTLSQEGGPAHK LPEYTLSQEGGPAHKREYTTICRLESFMET R L P H K R 1 0 0 0 0 1 2 2 1 0 2 1 0 0 2 1 1 0 1 0 0 0 15 0 1625.8049 O75569 O75569 142 156 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 2 7.8313E-05 155.97 By MS/MS 6.5 0.5 1 1 2 25418000 0 0 25418000 8633 273 8990 36996;36997 31017 31017 1 0 0 3924600 LPEYTLSQEGGPAHKR PIGSLQELAIHHGWRLPEYTLSQEGGPAHK PEYTLSQEGGPAHKREYTTICRLESFMETG R L P K R E 1 1 0 0 0 1 2 2 1 0 2 1 0 0 2 1 1 0 1 0 0 0 16 1 1781.906 O75569 O75569 142 157 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 3 0.00053583 86.539 By MS/MS 6 0 1 1 8872300 0 8872300 0 8634 273 8991 36998 31018 31018 1 0 3071300 0 LPFPIIDDR SKDINAYNCEEPTEKLPFPIIDDRNRELAI EEPTEKLPFPIIDDRNRELAILLGMLDPAE K L P D R N 0 1 0 2 0 0 0 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 9 0 1084.5917 P30041 P30041 98 106 PRDX6 Peroxiredoxin-6 yes yes 2 0.00072238 113.71 By MS/MS 7.5 1.12 1 1 1 1 4 26664000 0 0 26664000 8635 705 8992 36999;37000;37001;37002 31019 31019 1 0 0 5164400 LPFTPLSYIQGLSHR MGMFNSIFDGRVVAKLPFTPLSYIQGLSHR LPFTPLSYIQGLSHRNLLGDDTTDCSFIFL K L P H R N 0 1 0 0 0 1 0 1 1 1 3 0 0 1 2 2 1 0 1 0 0 0 15 0 1727.9359 Q9UM00 Q9UM00 168 182 TMCO1 Transmembrane and coiled-coil domain-containing protein 1 yes yes 3 7.7631E-05 114.21 By matching By MS/MS 7.75 0.829 2 1 1 1 3 17654000 274130 0 17380000 8636 2197 8993 37003;37004;37005;37006 31020;31021;31022 31020 3 590810 0 3314600 LPGAIDVIGQTITISR WQDRYGRAESPDLRRLPGAIDVIGQTITIS PGAIDVIGQTITISRVEGRRRANENSNIQV R L P S R V 1 1 0 1 0 1 0 2 0 4 1 0 0 0 1 1 2 0 0 1 0 0 16 0 1652.9461 Q6UN15 Q6UN15 310 325 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 2 9.0374E-05 105.66 By MS/MS 3 0 1 1 3293000 0 0 3293000 8637 1503 8994 37007 31023 31023 1 0 0 638690 LPGEGNAGLLGLGPEAAAPGK ______________________________ AGLLGLGPEAAAPGKRIRKPSLLYEGFESP K L P G K R 4 0 1 0 0 0 2 6 0 0 4 1 0 0 3 0 0 0 0 0 0 0 21 0 1888.0054 P25440 P25440 11 31 BRD2 Bromodomain-containing protein 2 yes yes 2 9.2924E-14 148.24 By MS/MS 2 0 1 1 12514000 0 0 12514000 8638 658 8995 37008 31024 31024 1 0 0 2827900 LPGEGNAGLLGLGPEAAAPGKR ______________________________ GLLGLGPEAAAPGKRIRKPSLLYEGFESPT K L P K R I 4 1 1 0 0 0 2 6 0 0 4 1 0 0 3 0 0 0 0 0 0 0 22 1 2044.1065 P25440 P25440 11 32 BRD2 Bromodomain-containing protein 2 yes yes 3 4.2921E-06 78.354 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 51523000 0 11537000 39985000 8639 658 8996 37009;37010;37011 31025;31026 31025 2 0 5195400 8868900 LPGGELNPGEDEVEGLK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG GGELNPGEDEVEGLKRLMTEILGRQDGVLQ K L P L K R 0 0 1 1 0 0 4 4 0 0 3 1 0 0 2 0 0 0 0 1 0 0 17 0 1751.8578 O43809 O43809 106 122 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2 1.1376E-06 158.52 By MS/MS By MS/MS 7 0 2 1 1 61458000 0 2236100 59222000 8640 213 8997 37012;37013 31027;31028 31028 2 0 1284000 10508000 LPGGELNPGEDEVEGLKR LPHVLLLQLGTTFFKLPGGELNPGEDEVEG GELNPGEDEVEGLKRLMTEILGRQDGVLQD K L P K R L 0 1 1 1 0 0 4 4 0 0 3 1 0 0 2 0 0 0 0 1 0 0 18 1 1907.9589 O43809 O43809 106 123 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2;3 1.6403E-16 181.76 By MS/MS 7 0 2 2 113270000 0 0 113270000 8641 213 8998 37014;37015 31029;31030 31029 2 0 0 20099000 LPGGPTLTFQVK ILSKTETNVYFKLMRLPGGPTLTFQVKKYS LMRLPGGPTLTFQVKKYSLVRDVVSSLRRH R L P V K K 0 0 0 0 0 1 0 2 0 0 2 1 0 1 2 0 2 0 0 1 0 0 12 0 1256.7129 Q9NQ55 Q9NQ55 102 113 PPAN Suppressor of SWI4 1 homolog yes yes 2 4.3578E-05 147.75 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 43106000 0 23372000 19734000 8642 2032 8999 37016;37017;37018;37019 31031;31032;31033 31033 3 0 7954300 3361100 LPGHAGSINEVAFHPDEPIIISASSDKR FVYVWDTTSRRILYKLPGHAGSINEVAFHP HPDEPIIISASSDKRLYMGEIQ________ K L P K R L 3 1 1 2 0 0 2 2 2 4 1 1 0 1 3 4 0 0 0 1 0 0 28 1 2956.5043 Q96DI7 Q96DI7 323 350 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 4;5 6.8031E-27 115.45 By MS/MS By MS/MS 5.14 0.833 2 2 3 1 6 119840000 0 7945900 111890000 8643 1767 9000 37020;37021;37022;37023;37024;37025;37026 31034;31035;31036;31037 31037 3 0 2750600 16154000 LPGLGIIIYLLK GPRQDTQAPVVPYWRLPGLGIIIYLLKQSA YWRLPGLGIIIYLLKQSANDFFSYYDSHRQ R L P L K Q 0 0 0 0 0 0 0 2 0 3 4 1 0 0 1 0 0 0 1 0 0 0 12 0 1311.853 Q92621 Q92621 1809 1820 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.026128 80.684 By MS/MS 1.5 0.5 1 1 2 1857500 0 0 1857500 8644 1714 9001 37027;37028 31038 31038 1 0 0 404980 LPGLQATVR IATIHSRLQDSQLWKLPGLQATVRLAWALA DSQLWKLPGLQATVRLAWALALRGISQLPD K L P V R L 1 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 1 0 0 1 0 0 9 0 953.56581 Q92621 Q92621 322 330 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0024705 103.83 By MS/MS 1.5 0.5 1 1 2 22429000 0 0 22429000 8645 1714 9002 37029;37030 31039 31039 1 0 0 4861100 LPHLLLYGPPGTGK QDILSTIQKFINEDRLPHLLLYGPPGTGKT RLPHLLLYGPPGTGKTSTILACAKQLYKDK R L P G K T 0 0 0 0 0 0 0 3 1 0 4 1 0 0 3 0 1 0 1 0 0 0 14 0 1461.8344 P40937 P40937 53 66 RFC5 Replication factor C subunit 5 yes yes 3 0.0047287 71.558 By matching By MS/MS 6 0 2 1 1 11718000 0 1118100 10600000 8646 787 9003 37031;37032 31040 31040 1 0 387050 1585800 LPHLPGLEDLGIQATPLELK ITRDKVERMHITDMKLPHLPGLEDLGIQAT GLEDLGIQATPLELKAIEVLRRHRTYRWLS K L P L K A 1 0 0 1 0 1 2 2 1 1 6 1 0 0 3 0 1 0 0 0 0 0 20 0 2153.2096 Q16795 Q16795 329 348 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 3 3.6645E-06 92.096 By matching By MS/MS 6 0 2 1 1 11966000 0 1257500 10708000 8647 1400 9004 37033;37034 31041 31041 1 0 435300 1602100 LPHVLLLQLGTTFFK MRRTVEGVLIVHEHRLPHVLLLQLGTTFFK LPHVLLLQLGTTFFKLPGGELNPGEDEVEG R L P F K L 0 0 0 0 0 1 0 1 1 0 5 1 0 2 1 0 2 0 0 1 0 0 15 0 1726.0182 O43809 O43809 91 105 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 3 0.011048 57.136 By MS/MS 7.5 0.5 1 1 2 4525600 0 0 4525600 8648 213 9005 37035;37036 31042 31042 1 0 0 745850 LPHYNKR FVNDIFERIAGEASRLPHYNKRSTITSREI RIAGEASRLPHYNKRSTITSREIQTAVRLL R L P K R S 0 1 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 7 1 926.50863 P57053 P57053 81 87 H2BFS Histone H2B type F-S yes yes 2 0.048334 94.669 By MS/MS By matching 8 1.41 1 1 1 1 1 3 2 3605900 0 3485700 120260 8649 953 9006 37037;37038;37039;37040;37041 31043;31044 31044 2 0 1600000 97202 LPIDKEEVSLR ISAFVEIIFDNSDNRLPIDKEEVSLRRVIG SDNRLPIDKEEVSLRRVIGAKKDQYFLDKK R L P L R R 0 1 0 1 0 0 2 0 0 1 2 1 0 0 1 1 0 0 0 1 0 0 11 1 1297.7242 Q9UQE7 Q9UQE7 89 99 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.010565 74.76 By MS/MS 2 0.816 1 1 1 3 33654000 0 0 33654000 8650 2222 9007 37042;37043;37044 31045 31045 1 0 0 7435900 LPIDVTEGEVISLGLPFGK SRSAGVPSRVIHIRKLPIDVTEGEVISLGL VTEGEVISLGLPFGKVTNLLMLKGKNQAFI K L P G K V 0 0 0 1 0 0 2 3 0 2 3 1 0 1 2 1 1 0 0 2 0 0 19 0 1983.0928 P26599 P26599 66 84 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3 4.823E-23 190.27 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 59378000 0 2770300 56608000 8651 671 9008 37045;37046;37047;37048 31046;31047;31048;31049 31048 4 0 919370 9429900 LPIFFFGTHETAFLGPK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG IFFFGTHETAFLGPKDIFPYSENKEKYGKP K L P P K D 1 0 0 0 0 0 1 2 1 1 2 1 0 4 2 0 2 0 0 0 0 0 17 0 1921.0138 O75475 O75475 40 56 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 1.3431E-06 137.52 By MS/MS By MS/MS 4.23 1.97 1 2 2 2 3 1 1 1 1 12 279650000 0 18179000 261470000 8652 262 9009 37049;37050;37051;37052;37053;37054;37055;37056;37057;37058;37059;37060;37061 31050;31051;31052;31053;31054;31055;31056;31057;31058;31059;31060;31061;31062;31063 31062 14 0 4686100 48685000 LPIGDVATQYFADR LEKIHHSGAKVVLSKLPIGDVATQYFADRD KLPIGDVATQYFADRDMFCAGRVPEEDLKR K L P D R D 2 1 0 2 0 1 0 1 0 1 1 0 0 1 1 0 1 0 1 1 0 0 14 0 1564.7886 Q99832 Q99832 293 306 CCT7 T-complex protein 1 subunit eta yes yes 2 9.262E-08 172.61 By matching By MS/MS By MS/MS 3.5 0.5 2 2 1 1 2 23041000 1800400 5727000 15513000 8653 1865 9010 37062;37063;37064;37065 31064;31065 31065 2 2077300 1900600 2705000 LPIGNTIQPSQAATFMNDAIEK PTPQPKTPSSSQPERLPIGNTIQPSQAATF QPSQAATFMNDAIEKARKAAELQARIQAQL R L P E K A 3 0 2 1 0 2 1 1 0 3 1 1 1 1 2 1 2 0 0 0 0 0 22 0 2358.1889 O43395 O43395 181 202 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2;3 9.319E-14 113.59 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 10026000 0 6470000 3555600 8654 196 9011 37066;37067;37068;37069 31066;31067 31067 2 0 2646700 689620 LPILVQLVDTLGAEK SVFVDALPHVPEHRRLPILVQLVDTLGAEK LPILVQLVDTLGAEKFLWILLILLFEQYVT R L P E K F 1 0 0 1 0 1 1 1 0 1 4 1 0 0 1 0 1 0 0 2 0 0 15 0 1607.9498 Q9H583 Q9H583 1396 1410 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00028666 126.76 By MS/MS 1 0 1 1 1730700 0 0 1730700 8655 1984 9012 37070 31068 31068 1 0 0 372900 LPIPEYALSLGLAVAPR SVYLMKDKEVFDVSKLPIPEYALSLGLAVA IPEYALSLGLAVAPRVRFLQKMQKQPTKEL K L P P R V 3 1 0 0 0 0 1 1 0 1 4 0 0 0 3 1 0 0 1 1 0 0 17 0 1779.0295 Q13206 Q13206 493 509 DDX10 Probable ATP-dependent RNA helicase DDX10 yes yes 3 0.063017 38.093 By MS/MS 2.5 0.5 1 1 2 912670 0 0 912670 8656 1230 9013 37071;37072 31069 31069 0 0 0 199530 LPIQEAFLGAMR SLQLSLGNALFTKPRLPIQEAFLGAMRTLY KPRLPIQEAFLGAMRTLYLADTFPTNFEDP R L P M R T 2 1 0 0 0 1 1 1 0 1 2 0 1 1 1 0 0 0 0 0 0 0 12 0 1344.7224 CON__Q9N2I2 CON__Q9N2I2 135 146 yes yes 2 0.011556 91.867 By matching By MS/MS By MS/MS 4.6 1.36 2 1 2 2 1 2 11791000 2259800 1633100 7898600 + 8657 98 9014 37073;37074;37075;37076;37077 31070;31071;31072 31071 3 2169500 696170 1395000 LPIQEFHLSR SPVLMRHLTASEAKKLPIQEFHLSRILQEL SEAKKLPIQEFHLSRILQELGLNQEQFVDL K L P S R I 0 1 0 0 0 1 1 0 1 1 2 0 0 1 1 1 0 0 0 0 0 0 10 0 1238.6772 P39748 P39748 202 211 FEN1 Flap endonuclease 1 yes yes 3 0.0040661 81.771 By MS/MS 4.75 1.48 1 1 1 1 4 24679000 0 0 24679000 8658 780 9015 37078;37079;37080;37081 31073;31074 31074 2 0 0 3669800 LPLAGQVLLK AVTADDLRQLFGDRKLPLAGQVLLKSGYAF FGDRKLPLAGQVLLKSGYAFVDYPDQNWAI K L P L K S 1 0 0 0 0 1 0 1 0 0 4 1 0 0 1 0 0 0 0 1 0 0 10 0 1050.6801 Q9Y6M1 Q9Y6M1 28 37 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 0.0081714 91.064 By MS/MS 3.5 0.5 1 1 2 3845100 0 3845100 0 8659 2315 9016 37082;37083 31075 31075 1 0 1554600 0 LPLATIVK PKAAKTPLKIHPLVRLPLATIVKDLVAQAP KIHPLVRLPLATIVKDLVAQAPLKPKTPRG R L P V K D 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 8 0 853.56369 O94776 O94776 515 522 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.011513 91.9 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 15411000 0 6787900 8623000 8660 298 9017 37084;37085;37086 31076;31077 31076 2 0 2759100 1672500 LPLEAALR QLATGGLVCPARRLRLPLEAALRCGCLDED CPARRLRLPLEAALRCGCLDEDTQRQLSQA R L P L R C 2 1 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 8 0 881.53345 P58107 P58107 413 420 EPPK1 Epiplakin yes yes 2 0.047348 73.616 By MS/MS By matching 1.5 0.5 1 1 1 1 6076500 0 4548600 1527900 8661 958 9018 37087;37088 31078 31078 1 0 2223300 345280 LPLETAYR QVATGGVIDPQHHHRLPLETAYRRGCLHKD DPQHHHRLPLETAYRRGCLHKDIYALISDQ R L P Y R R 1 1 0 0 0 0 1 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 8 0 961.52328 P58107 P58107 2025 2032 EPPK1 Epiplakin yes yes 2 0.0026694 107.67 By MS/MS By matching 2 1 1 1 1 1 19404000 0 15676000 3728300 8662 958 9019 37089;37090 31079 31079 1 0 7662100 723120 LPLFGLGR ADVRRESRLLQLLGRLPLFGLGRLVTRKSW LLQLLGRLPLFGLGRLVTRKSWLWQHDEPC R L P G R L 0 1 0 0 0 0 0 2 0 0 3 0 0 1 1 0 0 0 0 0 0 0 8 0 871.52797 P82930 P82930 71 78 MRPS34 28S ribosomal protein S34, mitochondrial yes yes 2 0.00098128 122.15 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 29181000 0 6132900 23048000 8663 1102 9020 37091;37092;37093;37094 31080;31081 31081 2 0 3375100 3993700 LPLFPEPLHVFAPR TRRRAIILAAAPGEKLPLFPEPLHVFAPRA KLPLFPEPLHVFAPRACQLSVVVDDKKFVS K L P P R A 1 1 0 0 0 0 1 0 1 0 3 0 0 2 4 0 0 0 0 1 0 0 14 0 1631.9188 P26358 P26358 1324 1337 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2;3 1.3375E-05 94.801 By MS/MS By MS/MS 2 1.07 3 2 1 1 2 5 43609000 0 6452500 37157000 8664 667 9021 37095;37096;37097;37098;37099;37100;37101 31082;31083;31084;31085;31086;31087 31085 6 0 3026800 7655000 LPLISGFYK WVYSFSYELILQSTRLPLISGFYKLLSITV ILQSTRLPLISGFYKLLSITVRNAKKIKYF R L P Y K L 0 0 0 0 0 0 0 1 0 1 2 1 0 1 1 1 0 0 1 0 0 0 9 0 1036.5957 P78527 P78527 660 668 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.052039 70.919 By MS/MS 1 0 1 1 6965600 0 0 6965600 8665 1089 9022 37102 31088 31088 1 0 0 1500800 LPLPAFR TDEDEGPAEPPPPPKLPLPAFRLKNDSDLF AEPPPPPKLPLPAFRLKNDSDLFGLGLEEA K L P F R L 1 1 0 0 0 0 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 7 0 812.49086 Q3YEC7 Q3YEC7 614 620 RABL6 Rab-like protein 6 yes yes 2 0.038022 85.306 By MS/MS By MS/MS 7 0 2 1 1 31521000 0 15176000 16345000 8666 1413 9023 37103;37104 31089;31090 31090 2 0 8714100 2900300 LPLPYGFSAMQGWR PNTVKCSGDGVGAPRLPLPYGFSAMQGWRV RLPLPYGFSAMQGWRVSMEDAHNCIPELDS R L P W R V 1 1 0 0 0 1 0 2 0 0 2 0 1 1 2 1 0 1 1 0 0 0 14 0 1621.8075 O15355 O15355 23 36 PPM1G Protein phosphatase 1G yes yes 2 0.00028468 150.1 By MS/MS By MS/MS 3 0 2 1 1 5289100 0 1740500 3548600 8667 177 9024 37105;37106 31091;31092 31092 2 0 741980 688260 LPLQDVYK DCILPPTRPTDKPLRLPLQDVYKIGGIGTV PTDKPLRLPLQDVYKIGGIGTVPVGRVETG R L P Y K I 0 0 0 1 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 974.54368 Q5VTE0;P68104;Q05639 Q5VTE0 248 255 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 0.0041223 102.72 By MS/MS By MS/MS By MS/MS 5.21 2.81 3 2 2 3 2 2 2 6 6 860320000 31662000 221740000 606920000 8668 1076;1165 9025 37107;37108;37109;37110;37111;37112;37113;37114;37115;37116;37117;37118;37119;37120 31093;31094;31095;31096;31097;31098;31099;31100;31101;31102;31103;31104;31105;31106;31107 31099 15 38370000 83948000 101240000 LPLQLDDAVRPEAEGEEEGR LHVQKIYVISLAEPRLPLQLDDAVRPEAEG DDAVRPEAEGEEEGRATVNQDTRLDNRVID R L P G R A 2 2 0 2 0 1 5 2 0 0 3 0 0 0 2 0 0 0 0 1 0 0 20 1 2222.0815 P14868 P14868 152 171 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 3 6.2368E-14 125.28 By matching By MS/MS 4 0 2 1 1 27671000 8795400 0 18875000 8669 566 9026 37121;37122 31108 31108 1 6862000 0 3082900 LPLSLYK RRVFQAMWLSFLKHKLPLSLYKKVLLIVHD WLSFLKHKLPLSLYKKVLLIVHDAILPQLA K L P Y K K 0 0 0 0 0 0 0 0 0 0 3 1 0 0 1 1 0 0 1 0 0 0 7 0 832.50584 Q9BVI4 Q9BVI4 264 270 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.039751 83.614 By MS/MS 4 0 1 1 5962600 0 0 5962600 8670 1914 9027 37123 31109 31109 1 0 0 973890 LPLTPVFEGLAFK AGLFDTAISLCQTFKLPLTPVFEGLAFKCI FKLPLTPVFEGLAFKCIKLQFGGEAAQAEA K L P F K C 1 0 0 0 0 0 1 1 0 0 3 1 0 2 2 0 1 0 0 1 0 0 13 0 1430.8173 Q12769 Q12769 1237 1249 NUP160 Nuclear pore complex protein Nup160 yes yes 2 0.017112 80.763 By MS/MS 1.5 0.5 1 1 2 3590700 0 0 3590700 8671 1196 9028 37124;37125 31110 31110 1 0 0 777340 LPLTWVLQNQQTFLK AKLGGVVSIKFLMERLPLTWVLQNQQTFLK LPLTWVLQNQQTFLKALLFVMMDLTGEVSN R L P L K A 0 0 1 0 0 3 0 0 0 0 4 1 0 1 1 0 2 1 0 1 0 0 15 0 1828.0247 Q9Y4A5 Q9Y4A5 1171 1185 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.00046787 144.1 By MS/MS 1 0 1 1 3261300 0 0 3261300 8672 2285 9029 37126 31111 31111 1 0 0 702700 LPMPEDYAMDELR PQRVPLRLLAPHIGRLPMPEDYAMDELRSL GRLPMPEDYAMDELRSLTQSYLRELAVGSL R L P L R S 1 1 0 2 0 0 2 0 0 0 2 0 2 0 2 0 0 0 1 0 0 0 13 0 1578.7058 P52948 P52948 1790 1802 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 0.0012761 111.27 By MS/MS 2 0 1 1 6277300 0 0 6277300 8673 916 9030 37127 31112 31112 1 0 0 1418600 LPNFGFVVFDDSEPVQK SYGNVVELRINSGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQKVLSNRPIMFRGEVRL K L P Q K V 0 0 1 2 0 1 1 1 0 0 1 1 0 3 2 1 0 0 0 3 0 0 17 0 1936.9571 Q13283 Q13283 377 393 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 6.3286E-37 213.06 By matching By MS/MS By MS/MS 4 1.18 1 2 5 2 1 3 6 128920000 2379300 12843000 113700000 8674 1236 9031 37128;37129;37130;37131;37132;37133;37134;37135;37136;37137 31113;31114;31115;31116;31117;31118;31119 31118 7 1856300 4284800 19045000 LPNFGFVVFDDSEPVQR NVVELRINTKGVGGKLPNFGFVVFDDSEPV NFGFVVFDDSEPVQRILIAKPIMFRGEVRL K L P Q R I 0 1 1 2 0 1 1 1 0 0 1 0 0 3 2 1 0 0 0 3 0 0 17 0 1964.9632 Q9UN86 Q9UN86 371 387 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2 8.6506E-06 135.65 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 24904000 0 3040900 21863000 8675 2203 9032 37138;37139;37140 31120;31121;31122 31121 3 0 1009200 3671500 LPNLTHLNLSGNK SENRIFGGLDMLAEKLPNLTHLNLSGNKLK EKLPNLTHLNLSGNKLKDISTLEPLKKLEC K L P N K L 0 0 3 0 0 0 0 1 1 0 4 1 0 0 1 1 1 0 0 0 0 0 13 0 1419.7834 Q92688 Q92688 87 99 ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B yes yes 2;3 1.9764E-25 205.52 By matching By MS/MS 6.67 0.745 3 2 1 1 5 123200000 0 2277100 120920000 8676 1716 9033 37141;37142;37143;37144;37145;37146 31123;31124;31125;31126;31127;31128 31124 6 0 788260 18785000 LPNNHIGISFIPR IKAPSGRDEPCLLKRLPNNHIGISFIPREV KRLPNNHIGISFIPREVGEHLVSIKKNGNH R L P P R E 0 1 2 0 0 0 0 1 1 3 1 0 0 1 2 1 0 0 0 0 0 0 13 0 1476.8201 O75369 O75369 1957 1969 FLNB Filamin-B yes yes 3 0.0095191 68.034 By MS/MS By matching 1.5 0.5 1 1 1 1 5604200 0 3816200 1788000 8677 254 9034 37147;37148 31129 31129 1 0 1865300 404060 LPNQTHPDVPVGDESQAR REAQLEEQFYLQALKLPNQTHPDVPVGDES QTHPDVPVGDESQARVLHMVGDKPVFSFQP K L P A R V 1 1 1 2 0 2 1 1 1 0 1 0 0 0 3 1 1 0 0 2 0 0 18 0 1958.9446 Q9NP81 Q9NP81 170 187 SARS2 Serine--tRNA ligase, mitochondrial yes yes 3 0.010797 55.031 By MS/MS 4 0 1 1 7425500 0 0 7425500 8678 2021 9035 37149 31130 31130 0 0 0 1212800 LPPEFSPVIIK ESRKKTERLAFRKNRLPPEFSPVIIKEWAA RKNRLPPEFSPVIIKEWAAYKGKSPQTPEL R L P I K E 0 0 0 0 0 0 1 0 0 2 1 1 0 1 3 1 0 0 0 1 0 0 11 0 1238.7275 Q9NZB2 Q9NZB2 633 643 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 0.065823 70.028 By MS/MS 2 0 1 1 2755600 0 0 2755600 8679 2101 9036 37150 31131 31131 1 0 0 622710 LPPKVESLESLYFTPIPAR GTSVPGEPASPISQRLPPKVESLESLYFTP VESLESLYFTPIPARSQAPLESSLDSLGDV R L P A R S 1 1 0 0 0 0 2 0 0 1 3 1 0 1 4 2 1 0 1 1 0 0 19 1 2156.1881 Q14980 Q14980 1763 1781 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 0.00012763 85.937 By MS/MS By MS/MS 1 0 2 1 1 14584000 0 2945600 11638000 8680 1327 9037 37151;37152 31132;31133;31134 31132 3 0 1439800 2507700 LPPLPAVER SKKNAAIAVLEELKKLPPLPAVERVKPRIK LEELKKLPPLPAVERVKPRIKKKTKPIVKP K L P E R V 1 1 0 0 0 0 1 0 0 0 2 0 0 0 3 0 0 0 0 1 0 0 9 0 990.58622 O95793 O95793 252 260 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 0.00038883 121.85 By MS/MS By MS/MS 4.43 1.18 2 2 1 2 4 3 67105000 0 34062000 33043000 8681 341 9038 37153;37154;37155;37156;37157;37158;37159 31135;31136;31137;31138;31139 31135 5 0 11394000 5655300 LPPLPLTLALGAFLNHR SVDSNWIVGATLEKKLPPLPLTLALGAFLN PLPLTLALGAFLNHRKNKFQCGFGLTIG__ K L P H R K 2 1 1 0 0 0 0 1 1 0 6 0 0 1 3 0 1 0 0 0 0 0 17 0 1842.088 O96008 O96008 332 348 TOMM40 Mitochondrial import receptor subunit TOM40 homolog yes yes 3 5.9367E-14 174.95 By MS/MS 4.5 1.12 1 1 1 1 4 4906500 0 0 4906500 8682 353 9039 37160;37161;37162;37163 31140;31141 31140 2 0 0 744390 LPPLPSLTSQPHQVLASEPIPFSDLQQVSR TRLAVLSSSLTHWKKLPPLPSLTSQPHQVL ASEPIPFSDLQQVSRIAAYAYSALSQIRVD K L P S R I 1 1 0 1 0 4 1 0 1 1 5 0 0 1 6 5 1 0 0 2 0 0 30 0 3280.7456 Q6IAA8 Q6IAA8 105 134 LAMTOR1 Ragulator complex protein LAMTOR1 yes yes 3 0.0013812 36.202 By MS/MS 8 0 1 1 1841800 0 1841800 0 8683 1475 9040 37164 31142 31142 1 0 837940 0 LPPLPTIR ______________________________ GKLSTCRLPPLPTIREIIKLLRLQAAKQLS R L P I R E 0 1 0 0 0 0 0 0 0 1 2 0 0 0 3 0 1 0 0 0 0 0 8 0 905.56984 Q8WVM0 Q8WVM0 12 19 TFB1M Dimethyladenosine transferase 1, mitochondrial yes yes 2 0.018663 85.359 By MS/MS 6 0 1 1 3323500 0 3323500 0 8684 1683 9041 37165 31143 31143 1 0 1150500 0 LPPLSLLK EPLDLQLMDGQAQQKLPPLSLLKLDNQEPG DGQAQQKLPPLSLLKLDNQEPGGQIAPKKA K L P L K L 0 0 0 0 0 0 0 0 0 0 4 1 0 0 2 1 0 0 0 0 0 0 8 0 879.57934 CON__P28800 CON__P28800 45 52 yes yes 2 0.0045431 101.28 By MS/MS By matching 2.67 0.471 1 2 2 1 5189600 3061700 0 2127900 + 8685 63 9042 37166;37167;37168 31144 31144 1 3570500 0 412710 LPPNTNDEVDEDPTGNK TVAGADKFGNICVVRLPPNTNDEVDEDPTG PNTNDEVDEDPTGNKALWDRGLLNGASQKA R L P N K A 0 0 3 3 0 0 2 1 0 0 1 1 0 0 3 0 2 0 0 1 0 0 17 0 1853.8279 Q15393 Q15393 1058 1074 SF3B3 Splicing factor 3B subunit 3 yes yes 2 9.5609E-10 172.99 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 8806900 0 4863000 3943900 8686 1361 9043 37169;37170 31145;31146;31147 31145 3 0 2189900 849770 LPPNVVEESAR LCPSGGEVSEELSLKLPPNVVEESARASVS LSLKLPPNVVEESARASVSVLGDILGSAMQ K L P A R A 1 1 1 0 0 0 2 0 0 0 1 0 0 0 2 1 0 0 0 2 0 0 11 0 1209.6354 CON__ENSEMBL:ENSBTAP00000024146;P01023 P01023 935 945 A2M Alpha-2-macroglobulin no no 2 0.0090244 93.111 By MS/MS 4.38 2.12 1 1 1 1 1 1 2 8 152660000 152660000 0 0 + 8687 370;28 9044 37171;37172;37173;37174;37175;37176;37177;37178 31148;31149;31150 31149 3 158630000 0 0 LPPPLSAPVAGLAALK VLKTARKDLGAPASKLPPPLSAPVAGLAAL PPPLSAPVAGLAALKAHAKEACGGPSAMAT K L P L K A 4 0 0 0 0 0 0 1 0 0 4 1 0 0 4 1 0 0 0 1 0 0 16 0 1513.9232 Q14781 Q14781 200 215 CBX2 Chromobox protein homolog 2 yes yes 2 0.010246 72.34 By MS/MS 3 0 1 1 3019500 0 0 3019500 8688 1319 9045 37179 31151 31151 1 0 0 585650 LPPPPDIK NNWQPERQVPFNEVRLPPPPDIKKEISEGD VPFNEVRLPPPPDIKKEISEGDEVEVYSRA R L P I K K 0 0 0 1 0 0 0 0 0 1 1 1 0 0 4 0 0 0 0 0 0 0 8 0 875.51165 P51114 P51114 49 56 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 2 0.018852 85.212 By MS/MS 3 0 1 1 7609400 0 7609400 0 8689 887 9046 37180 31152 31152 1 0 3243900 0 LPPPPPPPLPR LGYRDYRLQQLALGRLPPPPPPPLPRDLER ALGRLPPPPPPPLPRDLERERDYPFYERVR R L P P R D 0 1 0 0 0 0 0 0 0 0 2 0 0 0 8 0 0 0 0 0 0 0 11 0 1176.7019 Q96T37 Q96T37 315 325 RBM15 Putative RNA-binding protein 15 yes yes 2 0.0021047 108.7 By matching By MS/MS 2 0 2 1 1 8272500 3526800 0 4745700 8690 1838 9047 37181;37182 31153 31153 1 4249300 0 1072400 LPPQIFNSPFSLPSEHLAPPPLK SRDIEVASNPAFPQRLPPQIFNSPFSLPSE PFSLPSEHLAPPPLKYLAPDGAWTFANLQQ R L P L K Y 1 0 1 0 0 1 1 0 1 1 4 1 0 2 7 3 0 0 0 0 0 0 23 0 2525.3682 P42694 P42694 1653 1675 HELZ Probable helicase with zinc finger domain yes yes 3 0.068388 19.722 By MS/MS 1 0 1 1 799350 0 799350 0 8691 805 9048 37183 31154 31154 1 0 390710 0 LPPVLANLMGSMGAGK PGGSGGSPDGAGGSKLPPVLANLMGSMGAG PPVLANLMGSMGAGKGPQGPGGGGINVQEI K L P G K G 2 0 1 0 0 0 0 3 0 0 3 1 2 0 2 1 0 0 0 1 0 0 16 0 1554.8262 Q96QC0 Q96QC0 554 569 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 3.383E-05 128.67 By matching By MS/MS 2 0 2 1 1 14616000 547630 14068000 0 8692 1823 9049 37184;37185 31155 31155 1 659830 6335200 0 LPPVVPLPPPTLR RAPELVTKKFPVDLRLPPVVPLPPPTLREL LRLPPVVPLPPPTLRELELQRRPTGDFGFS R L P L R E 0 1 0 0 0 0 0 0 0 0 3 0 0 0 6 0 1 0 0 2 0 0 13 0 1394.865 Q92614 Q92614 207 219 MYO18A Unconventional myosin-XVIIIa yes yes 2 0.00028395 87.298 By MS/MS 1 0 1 1 0 0 0 0 8693 1710 9050 37186 31156 31156 1 0 0 0 LPPYSAGDGAELSTPGGK ELLSSDMKKDFIMHRLPPYSAGDGAELSTP YSAGDGAELSTPGGKLPRLDSVVRLQFKDH R L P G K L 2 0 0 1 0 0 1 4 0 0 2 1 0 0 3 2 1 0 1 0 0 0 18 0 1715.8366 Q8IUF8 Q8IUF8 339 356 MINA Bifunctional lysine-specific demethylase and histidyl-hydroxylase MINA yes yes 2 2.5878E-08 117.92 By MS/MS 4 0 1 1 4757400 0 4757400 0 8694 1567 9051 37187 31157 31157 1 0 1578800 0 LPQGLQYALNVPISVK ETVKNDEEQMETHERLPQGLQYALNVPISV PQGLQYALNVPISVKQEITFTDVSEQLMRD R L P V K Q 1 0 1 0 0 2 0 1 0 1 3 1 0 0 2 1 0 0 1 2 0 0 16 0 1738.9982 Q9UQR1 Q9UQR1 100 115 ZNF148 Zinc finger protein 148 yes yes 2 0.0059997 78.324 By MS/MS By matching 2.5 0.5 1 1 1 1 4658900 0 2043800 2615100 8695 2225 9052 37188;37189 31158 31158 1 0 920360 507200 LPQLAAIHHNNCMYIAHHLLTLGHQFR FHDVVPTYHKENLQKLPQLAAIHHNNCMYI MYIAHHLLTLGHQFRLRLAPILCDGTATFV K L P F R L 3 1 2 0 1 2 0 1 5 2 5 0 1 1 1 0 1 0 1 0 0 0 27 0 3204.6338 O43264 O43264 534 560 ZW10 Centromere/kinetochore protein zw10 homolog yes yes 4 0.073307 2.0834 By MS/MS 2 0 1 1 7811000 0 0 7811000 8696 192 9053 37190 31159 31159 1 0 0 1765100 LPQLPITNFSR KQTPKQRLLGWIQNKLPQLPITNFSRDWQS IQNKLPQLPITNFSRDWQSGRALGALVDSC K L P S R D 0 1 1 0 0 1 0 0 0 1 2 0 0 1 2 1 1 0 0 0 0 0 11 0 1284.719 P21333 P21333 180 190 FLNA Filamin-A yes yes 2 0.00027084 134.25 By MS/MS By matching 2.5 0.5 1 1 1 1 4145900 0 2687900 1458100 8697 623 9054 37191;37192 31160 31160 1 0 1210400 282790 LPQQSHSAFGATSSSSGFGK FGGFAISAGKKEEPKLPQQSHSAFGATSSS HSAFGATSSSSGFGKSAPPQLPSFYKIGSK K L P G K S 2 0 0 0 0 2 0 3 1 0 1 1 0 2 1 6 1 0 0 0 0 0 20 0 1979.9337 Q86XP3 Q86XP3 31 50 DDX42 ATP-dependent RNA helicase DDX42 yes yes 3 0.00058294 65.887 By MS/MS 2 0 1 1 8562200 0 0 8562200 8698 1559 9055 37193 31161 31161 1 0 0 1934900 LPQVEHVLPLLK VFSNAIDCLSDEDKKLPQVEHVLPLLKRGI DKKLPQVEHVLPLLKRGIGIHHGGLLPILK K L P L K R 0 0 0 0 0 1 1 0 1 0 4 1 0 0 2 0 0 0 0 2 0 0 12 0 1384.8442 P42285 P42285 438 449 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 0.0015444 96.82 By MS/MS 2 0 1 1 6608400 0 0 6608400 8699 800 9056 37194 31162 31162 1 0 0 1493400 LPQYLER KLVEQLDIEETEQSKLPQYLERFKALHSKL IEETEQSKLPQYLERFKALHSKLQALGKIE K L P E R F 0 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 7 0 917.49707 Q92552 Q92552 327 333 MRPS27 28S ribosomal protein S27, mitochondrial yes yes 2 0.018943 104.45 By matching By MS/MS 4 1 1 1 1 1 7760200 0 1850200 5910100 8700 1707 9057 37195;37196 31163 31163 1 0 788730 824350 LPRPPPPEMPESLK ALQWFIYDSVKVYFRLPRPPPPEMPESLKK RLPRPPPPEMPESLKKKLGLTQ________ R L P L K K 0 1 0 0 0 0 2 0 0 0 2 1 1 0 6 1 0 0 0 0 0 0 14 1 1586.849 Q00325 Q00325 342 355 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 3 0.0061662 71.031 By matching By matching By MS/MS 5.25 0.829 1 1 2 2 1 1 20528000 5705000 1681800 13141000 8701 1121 9058 37197;37198;37199;37200 31164 31164 1 4495200 582190 1966000 LPSGAYEGGALIK NHPYLFPVAAMESPKLPSGAYEGGALIKSS PKLPSGAYEGGALIKSSGKLMLLQKMLRKL K L P I K S 2 0 0 0 0 0 1 3 0 1 2 1 0 0 1 1 0 0 1 0 0 0 13 0 1274.6871 Q12873 Q12873 1045 1057 CHD3 Chromodomain-helicase-DNA-binding protein 3 yes yes 2 0.021952 67.214 By MS/MS 1 0 1 1 0 0 0 0 8702 1205 9059 37201 31165 31165 1 0 0 0 LPSGSGAASPTGSAVDIR SNVDVETQSGKTVIRLPSGSGAASPTGSAV GSGAASPTGSAVDIRAGAISASGPELQGAG R L P I R A 3 1 0 1 0 0 0 3 0 1 1 0 0 0 2 4 1 0 0 1 0 0 18 0 1641.8322 Q09666 Q09666 208 225 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.063991 53.252 By MS/MS 2 0.816 1 1 1 3 7612900 0 7612900 0 8703 1190 9060 37202;37203;37204 31166 31166 0 0 3524000 0 LPSLGAGFSQGLK LSPQLQQLACECYSRLPSLGAGFSQGLKHT SRLPSLGAGFSQGLKHTESWEQELHSLLAS R L P L K H 1 0 0 0 0 1 0 3 0 0 3 1 0 1 1 2 0 0 0 0 0 0 13 0 1273.703 Q8IZL8 Q8IZL8 243 255 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 0.00028213 130.94 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 41768000 0 13865000 27903000 8704 1596 9061 37205;37206;37207;37208 31167;31168;31169;31170;31171 31171 5 0 6141900 6197000 LPSNLPQLQNLIK ______________________________ NKLPSNLPQLQNLIKRDPPAYIEEFLQQYN K L P I K R 0 0 2 0 0 2 0 0 0 1 4 1 0 0 2 1 0 0 0 0 0 0 13 0 1476.8664 Q9NVU7 Q9NVU7 9 21 SDAD1 Protein SDA1 homolog yes yes 2 0.00061166 119.53 By MS/MS 3 0 1 1 2415600 0 2415600 0 8705 2071 9062 37209 31172 31172 1 0 1029800 0 LPSQYNFAMNVLGR DVLDLRGRHHEASIRLPSQYNFAMNVLGRV RLPSQYNFAMNVLGRVKGRTGLRVVVKAVD R L P G R V 1 1 2 0 0 1 0 1 0 0 2 0 1 1 1 1 0 0 1 1 0 0 14 0 1608.8082 Q8TEM1 Q8TEM1 1233 1246 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 2.2816E-17 191.4 By MS/MS 1 0 1 1 11258000 0 0 11258000 8706 1666 9063 37210 31173 31173 1 0 0 2425600 LPSRPGAQGVEPQNLR VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL PSRPGAQGVEPQNLRTLQGHSVIRSATNTT K L P L R T 1 2 1 0 0 2 1 2 0 0 2 0 0 0 3 1 0 0 0 1 0 0 16 1 1717.9224 Q8WXI9 Q8WXI9 225 240 GATAD2B Transcriptional repressor p66-beta yes yes 3 0.0048249 64.52 By MS/MS 3.5 0.5 1 1 2 9411400 0 9411400 0 8707 1697 9064 37211;37212 31174 31174 1 0 3699600 0 LPSSLLGPDPR LAARRWWAASPAPARLPSSLLGPDPRPGLR APARLPSSLLGPDPRPGLRATRAGPAGAAR R L P P R P 0 1 0 1 0 0 0 1 0 0 3 0 0 0 3 2 0 0 0 0 0 0 11 0 1150.6346 Q8NC56 Q8NC56 172 182 LEMD2 LEM domain-containing protein 2 yes yes 2 0.0040577 103.7 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 62717000 0 9218600 53498000 8708 1631 9065 37213;37214;37215;37216 31175;31176;31177 31175 3 0 3059300 8872500 LPSSLLGPDPRPGLR LAARRWWAASPAPARLPSSLLGPDPRPGLR LPSSLLGPDPRPGLRATRAGPAGAARARPE R L P L R A 0 2 0 1 0 0 0 2 0 0 4 0 0 0 4 2 0 0 0 0 0 0 15 1 1573.894 Q8NC56 Q8NC56 172 186 LEMD2 LEM domain-containing protein 2 yes yes 2;3 0.0015851 117.52 By MS/MS By matching 4 0.707 1 2 1 3 1 33017000 0 31016000 2001500 8709 1631 9066 37217;37218;37219;37220 31178;31179 31179 2 0 10364000 279170 LPSSPVYEDAASFK QTPPVSPAPQPTEERLPSSPVYEDAASFKA RLPSSPVYEDAASFKAELSYRGPVSGTEPE R L P F K A 2 0 0 1 0 0 1 0 0 0 1 1 0 1 2 3 0 0 1 1 0 0 14 0 1509.7351 Q14247 Q14247 415 428 CTTN Src substrate cortactin yes yes 2 0.018695 75.088 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 14995000 0 4299100 10696000 8710 1295 9067 37221;37222;37223 31180;31181 31180 2 0 1832700 2018300 LPSYLDK KDHLQKRQGIPSKSRLPSYLDKVLKKRILN QGIPSKSRLPSYLDKVLKKRILNFLTESGW R L P D K V 0 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 0 0 1 0 0 0 7 0 834.44872 Q86TJ2 Q86TJ2 393 399 TADA2B Transcriptional adapter 2-beta yes yes 2 0.0054893 127.31 By MS/MS By MS/MS By MS/MS 5.61 2.94 4 3 1 4 2 3 5 2 4 3 15 7 9 965980000 795880000 47763000 122340000 8711 1541 9068 37224;37225;37226;37227;37228;37229;37230;37231;37232;37233;37234;37235;37236;37237;37238;37239;37240;37241;37242;37243;37244;37245;37246;37247;37248;37249;37250;37251;37252;37253;37254 31182;31183;31184;31185;31186;31187;31188;31189;31190;31191;31192;31193;31194;31195;31196;31197;31198;31199;31200;31201;31202;31203;31204;31205;31206;31207 31186 26 854950000 24255000 99953000 LPTFGAPEQLVDLK KKSKKPPPVPALPSKLPTFGAPEQLVDLKQ KLPTFGAPEQLVDLKQAGLEAAAKATSSHP K L P L K Q 1 0 0 1 0 1 1 1 0 0 3 1 0 1 2 0 1 0 0 1 0 0 14 0 1526.8344 Q14258 Q14258 403 416 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.0018388 103.88 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 55144000 0 20724000 34420000 8712 1297 9069 37255;37256;37257;37258;37259;37260 31208;31209;31210;31211 31209 4 0 8267300 6309600 LPTIDPNTR QSLEYLEQVRQHLSRLPTIDPNTRTLLLCG RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF R L P T R T 0 1 1 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 0 0 0 0 9 0 1025.5506 Q9BZE4 Q9BZE4 161 169 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.019204 82.75 By MS/MS 2.5 0.5 1 1 2 38199000 0 0 38199000 8713 1941 9070 37261;37262 31212 31212 1 0 0 7479200 LPTPSMMNDYYAASPR WLPKFSHADAQKMKRLPTPSMMNDYYAASP PTPSMMNDYYAASPRIFPHLCSLCNVECSH R L P P R I 2 1 1 1 0 0 0 0 0 0 1 0 2 0 3 2 1 0 2 0 0 0 16 0 1812.8175 Q14966 Q14966 407 422 ZNF638 Zinc finger protein 638 yes yes 2 5.9301E-05 109.84 By MS/MS 1 0 1 1 1647800 0 1647800 0 8714 1324 9071 37263 31213 31213 1 0 805400 0 LPVALDPGAK ETKIKGKSGRFFTVKLPVALDPGAKISVIV FFTVKLPVALDPGAKISVIVETVYTHVLHP K L P A K I 2 0 0 1 0 0 0 1 0 0 2 1 0 0 2 0 0 0 0 1 0 0 10 0 979.57023 P04843 P04843 117 126 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.04977 72.879 By matching By MS/MS By matching 2.5 1.12 1 1 1 1 1 2 1 15565000 1083600 11569000 2911900 8715 419 9072 37264;37265;37266;37267 31214 31214 1 1083600 4985100 475610 LPVDIAYK QIATGGIIDPKESHRLPVDIAYKRGYFNEE DPKESHRLPVDIAYKRGYFNEELSEILSDP R L P Y K R 1 0 0 1 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 8 0 917.52222 P15924 P15924 2386 2393 DSP Desmoplakin yes yes 2 0.020722 83.753 By MS/MS By MS/MS By MS/MS 5.4 3.83 2 1 1 1 3 1 1 73988000 34244000 13686000 26058000 8716 572 9073 37268;37269;37270;37271;37272 31215;31216;31217;31218;31219 31218 5 44563000 6689400 5614700 LPVDLAEELGHR HRAGARLDVRDAWGRLPVDLAEELGHRDVA WGRLPVDLAEELGHRDVARYLRAAAGGTRG R L P H R D 1 1 0 1 0 0 2 1 1 0 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1347.7147 P42771 P42771 113 124 CDKN2A Cyclin-dependent kinase inhibitor 2A yes yes 3 0.00020668 116.74 By MS/MS 8 0 1 1 8894200 0 0 8894200 8717 811 9074 37273 31220 31220 1 0 0 1363600 LPVEEAYKR QAATGFIVDPVSNLRLPVEEAYKRGLVGIE PVSNLRLPVEEAYKRGLVGIEFKEKLLSAE R L P K R G 1 1 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 1 1103.5975 P15924 P15924 2310 2318 DSP Desmoplakin yes yes 2 0.0011463 133.6 By MS/MS 1 0 1 1 10205000 0 0 10205000 8718 572 9075 37274 31221 31221 1 0 0 2198900 LPVGTTATLYFR DPKGKSLKDEDVLQKLPVGTTATLYFRDLG LQKLPVGTTATLYFRDLGAQISWVTVFLTE K L P F R D 1 1 0 0 0 0 0 1 0 0 2 0 0 1 1 0 3 0 1 1 0 0 12 0 1337.7343 Q9NZ01 Q9NZ01 68 79 TECR Very-long-chain enoyl-CoA reductase yes yes 2 0.03945 77.533 By MS/MS 5.5 0.5 1 1 2 12799000 0 0 12799000 8719 2100 9076 37275;37276 31222 31222 0 0 0 1903300 LPVIDPESGNTLYILTHK LFDAVSSLIRNKIHRLPVIDPESGNTLYIL IDPESGNTLYILTHKRILKFLKLFITEFPK R L P H K R 0 0 1 1 0 0 1 1 1 2 3 1 0 0 2 1 2 0 1 1 0 0 18 0 2009.0833 P54619 P54619 153 170 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 yes yes 3 6.6825E-09 113.33 By matching By MS/MS 6 0 2 1 1 5764800 0 564080 5200700 8720 929 9077 37277;37278 31223 31223 1 0 195260 778080 LPVPAAAPTPWETHK LQAAAFLDFLWHNMKLPVPAAAPTPWETHK LPVPAAAPTPWETHKGALP___________ K L P H K G 3 0 0 0 0 0 1 0 1 0 1 1 0 0 4 0 2 1 0 1 0 0 15 0 1613.8566 Q12788 Q12788 790 804 TBL3 Transducin beta-like protein 3 yes yes 3 0.00039615 89.992 By MS/MS By MS/MS 4.67 3.5 1 1 2 1 1 3 3 47327000 0 22796000 24531000 8721 1197 9078 37279;37280;37281;37282;37283;37284 31224;31225;31226;31227;31228 31228 5 0 11309000 6827100 LPVQLQR AWGIKVERVEIKDVKLPVQLQRAMAAEAEA RVEIKDVKLPVQLQRAMAAEAEASREARAK K L P Q R A 0 1 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 852.51814 P27105 P27105 199 205 STOM Erythrocyte band 7 integral membrane protein yes yes 2 0.0088993 122.5 By MS/MS 7 0 1 1 5350700 0 5350700 0 8722 675 9079 37285 31229 31229 1 0 3072400 0 LPVSLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLR KKEEDSAIPITVPGRLPVSLAGHPVVAAQA QAAVAAQAAALEQLREKLESAEPPEKKMAL R L P L R E 17 1 0 0 0 5 1 1 1 0 4 0 0 0 2 1 0 0 0 5 0 0 38 0 3573.9743 Q99856 Q99856 413 450 ARID3A AT-rich interactive domain-containing protein 3A yes yes 4 4.7932E-14 66.381 By MS/MS 3 0 1 1 9705900 0 0 9705900 8723 1867 9080 37286 31230 31230 1 0 0 1882500 LPVVIGGLLDVDCSEDVIK QKYIEIYVQKVNPSRLPVVIGGLLDVDCSE IGGLLDVDCSEDVIKNLILVVRGQFSTDEL R L P I K N 0 0 0 3 1 0 1 2 0 2 3 1 0 0 1 1 0 0 0 4 0 0 19 0 2040.0813 Q00610 Q00610 812 830 CLTC Clathrin heavy chain 1 yes yes 2;3 1.3078E-10 162.93 By MS/MS 1 0 2 2 8820600 0 0 8820600 8724 1125 9081 37287;37288 31231;31232 31231 2 0 0 1900500 LPYDVTPEQALAHEEVK SWVNQMESQTGEASKLPYDVTPEQALAHEE YDVTPEQALAHEEVKTRLDSSIRNMRAVTD K L P V K T 2 0 0 1 0 1 3 0 1 0 2 1 0 0 2 0 1 0 1 2 0 0 17 0 1937.9735 P46940 P46940 1112 1128 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 0.0012906 72.311 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 74257000 0 40606000 33651000 8725 835 9082 37289;37290;37291 31233;31234 31233 2 0 18659000 7604500 LQAALDDEEAGGR RRLSDKGLKAELMERLQAALDDEEAGGRPA ERLQAALDDEEAGGRPAMEPGNGSLDLGGD R L Q G R P 3 1 0 2 0 1 2 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 13 0 1343.6317 Q00839 Q00839 38 50 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 0.00018153 106.62 By MS/MS By MS/MS 2 0 2 1 1 6228400 0 0 6228400 8726 1127 9083 37292;37293 31235;31236 31235 2 0 0 1407500 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR RRLSDKGLKAELMERLQAALDDEEAGGRPA PGNGSLDLGGDSAGRSGAGLEQEAAAGGDE R L Q G R S 5 2 1 4 0 1 3 7 0 0 4 0 1 0 2 2 0 0 0 0 0 0 32 1 3125.432 Q00839 Q00839 38 69 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3;4 2.2879E-126 239.39 By MS/MS By MS/MS 1.8 0.4 1 4 2 3 103140000 0 31325000 71819000 8727 1127 9084;9085 37294;37295;37296;37297;37298 31237;31238;31239;31240 31239 536 4 0 14106000 16175000 LQAAYAGDKADDIQK ALGTQVRQLQEDAARLQAAYAGDKADDIQK LQAAYAGDKADDIQKRENEVLEAWKSLLDA R L Q Q K R 4 0 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 1 0 0 0 15 1 1605.7999 Q01082 Q01082 1870 1884 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.070431 37.182 By MS/MS 1 0 1 1 15781000 0 0 15781000 8728 1128 9086 37299 31241 31241 1 0 0 3400300 LQAAYAGDKADDIQKR ALGTQVRQLQEDAARLQAAYAGDKADDIQK QAAYAGDKADDIQKRENEVLEAWKSLLDAC R L Q K R E 4 1 0 3 0 2 0 1 0 1 1 2 0 0 0 0 0 0 1 0 0 0 16 2 1761.901 Q01082 Q01082 1870 1885 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3;4 2.4402E-05 104.41 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 44931000 0 16943000 27988000 8729 1128 9087 37300;37301;37302;37303;37304 31242;31243;31244;31245 31244 4 0 8196100 6030500 LQAEAFQAR EEVHAKVEEQGNQMRLQAEAFQARLRSWFE QGNQMRLQAEAFQARLRSWFEPLVEDMQRQ R L Q A R L 3 1 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 9 0 1032.5352 CON__Q03247;P02649 CON__Q03247 269 277 APOE Apolipoprotein E yes no 2 1.1194E-23 192.11 By MS/MS By MS/MS By MS/MS 8.44 1.57 2 1 3 3 4 3 2 542050000 230900000 84154000 226990000 + 8730 72 9088 37305;37306;37307;37308;37309;37310;37311;37312;37313 31246;31247;31248;31249;31250;31251;31252;31253;31254 31251 9 287220000 252830000 289950000 LQAEAPHIVVGTPGR HACIGGTNVRNEMQKLQAEAPHIVVGTPGR LQAEAPHIVVGTPGRVFDMLNRRYLSPKWI K L Q G R V 2 1 0 0 0 1 1 2 1 1 1 0 0 0 2 0 1 0 0 2 0 0 15 0 1543.8471 Q14240 Q14240 148 162 EIF4A2 Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed yes yes 3 0.0036739 68.173 By MS/MS 5 0 1 1 6434500 0 6434500 0 8731 1294 9089 37314 31255 31255 1 0 1658600 0 LQAEIEGLK RTKTEISEMNRNISRLQAEIEGLKGQRASL NRNISRLQAEIEGLKGQRASLEAAIADAEQ R L Q L K G 1 0 0 0 0 1 2 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 0 999.56006 CON__P05787;P05787 CON__P05787 317 325 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.0005603 131.06 By MS/MS By MS/MS By MS/MS 4.47 2.57 2 2 2 5 2 1 1 1 1 2 7 8 2449500000 59275000 912840000 1477400000 + 8732 49 9090 37315;37316;37317;37318;37319;37320;37321;37322;37323;37324;37325;37326;37327;37328;37329;37330;37331 31256;31257;31258;31259;31260;31261;31262;31263;31264;31265;31266;31267;31268;31269;31270;31271 31264 16 46514000 302860000 254170000 LQAEIEGLKGQR RTKTEISEMNRNISRLQAEIEGLKGQRASL ISRLQAEIEGLKGQRASLEAAIADAEQRGE R L Q Q R A 1 1 0 0 0 2 2 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 12 1 1340.7412 CON__P05787;P05787 CON__P05787 317 328 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 2.7679E-07 169.92 By matching By MS/MS By matching 3.5 1.5 1 2 2 3 1 6 1 242980000 7855400 229320000 5807600 + 8733 49 9091 37332;37333;37334;37335;37336;37337;37338;37339 31272;31273;31274;31275;31276;31277 31277 6 9464800 75224000 810050 LQAEISNVK NSKMEIAELNRTVQRLQAEISNVKKQIEQM NRTVQRLQAEISNVKKQIEQMQSLISDAEE R L Q V K K 1 0 1 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1000.5553 CON__Q7Z794;Q7Z794 CON__Q7Z794 392 400 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.01569 93.267 By MS/MS 10 0 1 1 0 0 0 0 + 8734 95 9092 37340 31278 31278 1 0 0 0 LQAEISQAAR EKIAQRLRTKAQLEKLQAEISQAARKTGIH AQLEKLQAEISQAARKTGIHTSTRLALIAP K L Q A R K 3 1 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1085.5829 O43395 O43395 351 360 PRPF3 U4/U6 small nuclear ribonucleoprotein Prp3 yes yes 2 0.00081726 113.18 By MS/MS 3 0 1 1 2934200 0 2934200 0 8735 196 9093 37341 31279 31279 1 0 1250900 0 LQAILKPMMLR LKDFGDLKTEEQVQKLQAILKPMMLRRLKE QVQKLQAILKPMMLRRLKEDVEKNLAPKQE K L Q L R R 1 1 0 0 0 1 0 0 0 1 3 1 2 0 1 0 0 0 0 0 0 0 11 1 1312.7723 Q9HCK8;Q3L8U1;Q9P2D1 Q9HCK8 1021 1031 CHD8;CHD9;CHD7 Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 7 yes no 3 0.0047317 83.869 By MS/MS 1 0 1 1 1859200 0 0 1859200 8736 2013 9094 37342 31280 31280 1 0 0 400590 LQAITASSANLR QRPTKELHGTSIVPKLQAITASSANLRHSP VPKLQAITASSANLRHSPRVLVQHCPARTP K L Q L R H 3 1 1 0 0 1 0 0 0 1 2 0 0 0 0 2 1 0 0 0 0 0 12 0 1243.6884 Q9Y2K7 Q9Y2K7 819 830 KDM2A Lysine-specific demethylase 2A yes yes 2 0.050652 74.162 By matching By MS/MS 1.33 0.471 2 1 1 2 12261000 1107500 0 11154000 8737 2241 9095 37343;37344;37345 31281 31281 0 1107500 0 2487200 LQALANEQAAAAHELEK DIQNMNFLLKAEVQKLQALANEQAAAAHEL ALANEQAAAAHELEKMQQSVYVKDDKIRLL K L Q E K M 6 0 1 0 0 2 3 0 1 0 3 1 0 0 0 0 0 0 0 0 0 0 17 0 1805.9272 Q86UP2 Q86UP2 654 670 KTN1 Kinectin yes yes 2;3 9.6842E-06 116.63 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 32173000 0 5674200 26499000 8738 1549 9096 37346;37347;37348;37349 31282;31283;31284;31285 31285 4 0 2555200 5758200 LQALDTGWNELHK TQGQTDAQYMFLRQRLQALDTGWNELHKMW QRLQALDTGWNELHKMWENRQNLLSQSHAY R L Q H K M 1 0 1 1 0 1 1 1 1 0 3 1 0 0 0 0 1 1 0 0 0 0 13 0 1523.7732 Q01082 Q01082 1144 1156 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 7.3538E-05 124.89 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 81567000 1739000 25475000 54353000 8739 1128 9097 37350;37351;37352;37353 31286;31287;31288 31286 3 1739000 12452000 11752000 LQANFTIR SETSPAFRILSVEPRLQANFTIREDANPSS ILSVEPRLQANFTIREDANPSSRQRGLKRF R L Q I R E 1 1 1 0 0 1 0 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 8 0 961.53451 Q9NXH9 Q9NXH9 529 536 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase yes yes 2 2.0257E-06 124.08 By MS/MS 3 0 1 1 0 0 0 0 8740 2090 9098 37354 31289 31289 1 0 0 0 LQANISTGVSK KGPLSQEALMELFPKLQANISTGVSKIRLL LFPKLQANISTGVSKIRLLTIRILNHFDVQ K L Q S K I 1 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 1 0 0 1 0 0 11 0 1116.6139 O75691 O75691 634 644 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00094014 114.97 By MS/MS 1 0 1 1 6863700 0 0 6863700 8741 280 9099 37355 31290 31290 1 0 0 1478900 LQAQLNELQAQLSQK AVQAQGGESQQEAQRLQAQLNELQAQLSQK LQAQLNELQAQLSQKEQAAEHYKLQMEKAK R L Q Q K E 2 0 1 0 0 5 1 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 15 0 1710.9264 Q14980 Q14980 1589 1603 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 2.2437E-149 289.71 By MS/MS By MS/MS By MS/MS 1.17 0.373 5 1 2 1 3 87805000 7819100 17472000 62514000 8742 1327 9100 37356;37357;37358;37359;37360;37361 31291;31292;31293;31294 31292 4 7819100 8540300 13495000 LQAQSLSTVGPR GLRERELEEIRAKLRLQAQSLSTVGPRLAS KLRLQAQSLSTVGPRLASEYLTPEEMVTFK R L Q P R L 1 1 0 0 0 2 0 1 0 0 2 0 0 0 1 2 1 0 0 1 0 0 12 0 1255.6884 O43290 O43290 374 385 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 3.3939E-12 180.67 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 35289000 0 19082000 16207000 8743 193 9101 37362;37363;37364;37365;37366 31295;31296;31297 31295 3 0 8447100 3433800 LQASNVTNKNDPK ______________________________ LKLQASNVTNKNDPKSINSRVFIGNLNTAL K L Q P K S 1 0 3 1 0 1 0 0 0 0 1 2 0 0 1 1 1 0 0 1 0 0 13 1 1427.7369 Q9UKM9 Q9UKM9 5 17 RALY RNA-binding protein Raly yes yes 2 1.0159E-05 163.84 By MS/MS By matching 6 0 2 1 1 6465400 0 5651000 814410 8744 2181 9102 37367;37368 31298 31298 1 0 1956200 121840 LQAVEVVITHLAPGTK EVTYKMCSIPPKNEKLQAVEVVITHLAPGT QAVEVVITHLAPGTKHETWSGHVISS____ K L Q T K H 2 0 0 0 0 1 1 1 1 1 2 1 0 0 1 0 2 0 0 3 0 0 16 0 1674.9669 Q9Y2V2 Q9Y2V2 121 136 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 3 0.028719 43.794 By MS/MS 7.5 0.5 1 1 2 6835400 0 0 6835400 8745 2251 9103 37369;37370 31299 31299 1 0 0 1098900 LQAVQQQQER ALREAQQVQAEQQARLQAVQQQQERLRKQE EQQARLQAVQQQQERLRKQEQHMHQEHLSL R L Q E R L 1 1 0 0 0 5 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1226.6367 Q8TES7 Q8TES7 1009 1018 FBF1 Fas-binding factor 1 yes yes 2 0.0075363 92.439 By MS/MS 4 0 1 1 17059000 17059000 0 0 8746 1667 9104 37371 31300 31300 1 13309000 0 0 LQDAINILK GKYVGLVRVLAKHGKLQDAINILKEMKEKD LAKHGKLQDAINILKEMKEKDVLIKDTTAL K L Q L K E 1 0 1 1 0 1 0 0 0 2 2 1 0 0 0 0 0 0 0 0 0 0 9 0 1026.6073 P42704 P42704 764 772 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.073293 66.546 By MS/MS 2 0 1 1 6594700 0 0 6594700 8747 808 9105 37372 31301 31301 1 0 0 1490300 LQDAPSGQVVR PSVVRIGVPLSVAVKLQDAPSGQVVRGSVF VAVKLQDAPSGQVVRGSVFLRNPSHVNELC K L Q V R G 1 1 0 1 0 2 0 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 0 1168.62 CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 43 53 yes no 2 1.8249E-05 150.27 By MS/MS 10 0 1 1 3454300 3454300 0 0 + 8748 25 9106 37373 31302 31302 1 6293100 0 0 LQDEIQNMK NFAVEAANYQDTIGRLQDEIQNMKEEMARH QDTIGRLQDEIQNMKEEMARHLREYQDLLN R L Q M K E 0 0 1 1 0 2 1 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 9 0 1117.5438 P08670 P08670 365 373 VIM Vimentin yes yes 2 1.5824E-23 190.51 By MS/MS By MS/MS By MS/MS 4.56 1.26 2 3 2 1 1 1 3 5 574650000 9872400 62703000 502070000 8749 476 9107 37374;37375;37376;37377;37378;37379;37380;37381;37382 31303;31304;31305;31306;31307;31308;31309 31305 7 7702200 20175000 80903000 LQDEIQNMKEEMAR NFAVEAANYQDTIGRLQDEIQNMKEEMARH RLQDEIQNMKEEMARHLREYQDLLNVKMAL R L Q A R H 1 1 1 1 0 2 3 0 0 1 1 1 2 0 0 0 0 0 0 0 0 0 14 1 1733.8077 P08670 P08670 365 378 VIM Vimentin yes yes 2;3 5.4028E-126 279.12 By MS/MS By MS/MS 4.3 1.98 4 4 6 11 11 2 2 2 2 13 31 3223600000 0 226480000 2997100000 8750 476 9108;9109;9110 37383;37384;37385;37386;37387;37388;37389;37390;37391;37392;37393;37394;37395;37396;37397;37398;37399;37400;37401;37402;37403;37404;37405;37406;37407;37408;37409;37410;37411;37412;37413;37414;37415;37416;37417;37418;37419;37420;37421;37422;37423;37424;37425;37426 31310;31311;31312;31313;31314;31315;31316;31317;31318;31319;31320;31321;31322;31323;31324;31325;31326;31327;31328;31329;31330;31331;31332;31333;31334;31335;31336;31337;31338;31339;31340;31341;31342;31343 31325 187;188 34 0 73557000 483170000 LQDLEEALQQSK AEERGEQALQDAWQKLQDLEEALQQSKEEL WQKLQDLEEALQQSKEELARLLRDYQAMLG K L Q S K E 1 0 0 1 0 3 2 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 12 0 1400.7147 CON__Q7Z794;Q7Z794 CON__Q7Z794 428 439 KRT77 Keratin, type II cytoskeletal 1b yes no 2 5.5718E-19 195.51 By MS/MS By matching 2 0.707 1 2 1 2 2 13078000 7531600 0 5546100 + 8751 95 9111 37427;37428;37429;37430 31344 31344 1 7697600 0 1140300 LQDLEEALQQSKEELAR AEERGEQALQDAWQKLQDLEEALQQSKEEL DLEEALQQSKEELARLLRDYQAMLGVKLSL K L Q A R L 2 1 0 1 0 3 4 0 0 0 4 1 0 0 0 1 0 0 0 0 0 0 17 1 1999.0222 CON__Q7Z794;Q7Z794 CON__Q7Z794 428 444 KRT77 Keratin, type II cytoskeletal 1b yes no 3 0.00055364 84.94 By MS/MS 8.5 0.5 1 1 2 3502900 3502900 0 0 + 8752 95 9112 37431;37432 31345 31345 1 2434700 0 0 LQDLQTALQK AEQRGEMALKDANAKLQDLQTALQKAKDDL DANAKLQDLQTALQKAKDDLARLLRDYQEL K L Q Q K A 1 0 0 1 0 3 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 10 0 1156.6452 CON__Q01546;Q01546 Q01546 447 456 KRT76 Keratin, type II cytoskeletal 2 oral no no 2 8.0003E-07 154.56 By MS/MS 5 4 1 1 2 16862000 16862000 0 0 + 8753 71;1135 9113 37433;37434 31346;31347 31346 2 14891000 0 0 LQDVFEFR KYNPPDHDVVAMARKLQDVFEFRYAKMPDE VVAMARKLQDVFEFRYAKMPDEPLEPGPLP K L Q F R Y 0 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 8 0 1052.5291 P25440 P25440 442 449 BRD2 Bromodomain-containing protein 2 yes yes 2 0.00029171 132.57 By MS/MS 2 0 1 1 3041800 0 0 3041800 8754 658 9114 37435 31348 31348 1 0 0 687390 LQDVSGQLNSTK KEELALEKKRELEKRLQDVSGQLNSTKKPP EKRLQDVSGQLNSTKKPPKKANEKTESSSA R L Q T K K 0 0 1 1 0 2 0 1 0 0 2 1 0 0 0 2 1 0 0 1 0 0 12 0 1288.6623 P25440 P25440 740 751 BRD2 Bromodomain-containing protein 2 yes yes 2 0.00024025 131.09 By MS/MS 2 0 1 1 8889500 0 0 8889500 8755 658 9115 37436 31349 31349 1 0 0 2008900 LQDVSGQLSSSK KEELAQEKKKELEKRLQDVSGQLSSSKKPA EKRLQDVSGQLSSSKKPARKEKPGSAPSGG R L Q S K K 0 0 0 1 0 2 0 1 0 0 2 1 0 0 0 4 0 0 0 1 0 0 12 0 1247.6357 Q15059 Q15059 672 683 BRD3 Bromodomain-containing protein 3 yes yes 2 9.8703E-05 140.07 By matching By matching By MS/MS 2.25 0.433 3 1 1 1 2 29412000 6775800 5475400 17161000 8756 1342 9116 37437;37438;37439;37440 31350;31351 31350 2 8164000 2465700 3577600 LQDYEEK EKEQMMREKEELMLRLQDYEEKTKKAEREL EKEELMLRLQDYEEKTKKAERELSEQIQRA R L Q E K T 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 7 0 923.42363 P15311 P15311 351 357 EZR Ezrin yes yes 2 0.042301 81.119 By MS/MS 3.5 0.5 1 1 2 7304700 0 0 7304700 8757 569 9117 37441;37442 31352 31352 1 0 0 1400900 LQEAGILSAEELQR EHSFDGLRRKVSAQRLQEAGILSAEELQRL RLQEAGILSAEELQRLAQGHTTVDELARRE R L Q Q R L 2 1 0 0 0 2 3 1 0 1 3 0 0 0 0 1 0 0 0 0 0 0 14 0 1555.8206 Q15149 Q15149 2795 2808 PLEC Plectin yes yes 2 4.1032E-17 187.76 By MS/MS By MS/MS 1 0 2 1 1 30384000 0 16573000 13811000 8758 1348 9118 37443;37444 31353;31354 31353 2 0 8100700 2975900 LQEALGMHESK CFLPGWQEIKGVQQRLQEALGMHESKYLIL VQQRLQEALGMHESKYLILPVHSNIPMMDQ R L Q S K Y 1 0 0 0 0 1 2 1 1 0 2 1 1 0 0 1 0 0 0 0 0 0 11 0 1241.6074 Q7L2E3 Q7L2E3 688 698 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2;3 0.0057336 99.53 By MS/MS 1.67 0.471 1 2 3 15785000 0 0 15785000 8759 1522 9119 37445;37446;37447 31355;31356 31356 2 0 0 3531400 LQEALNLFK SSYNMVIREDNQTNRLQEALNLFKSIWNNR DNQTNRLQEALNLFKSIWNNRWLRTISVIL R L Q F K S 1 0 1 0 0 1 1 0 0 0 3 1 0 1 0 0 0 0 0 0 0 0 9 0 1074.6073 P63092;Q5JWF2 P63092 266 274 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0018719 106.36 By MS/MS By MS/MS 5 0 2 1 1 7398600 0 3283600 4115000 8760 1058 9120 37448;37449 31357;31358 31358 2 0 846420 573970 LQEAQMQQGPEAHKEPPAPSQGPGGK CEDKRRQDEEEAQVKLQEAQMQQGPEAHKE AHKEPPAPSQGPGGKQNEDLQVKVQDITMQ K L Q G K Q 3 0 0 0 0 5 3 4 1 0 1 2 1 0 5 1 0 0 0 0 0 0 26 1 2696.2977 Q53GS7 Q53GS7 348 373 GLE1 Nucleoporin GLE1 yes yes 4 0.00020378 54.141 By MS/MS 2.5 0.5 1 1 2 14942000 0 0 14942000 8761 1425 9121 37450;37451 31359;31360 31359 2 0 0 2984200 LQEEEQKKEELAR AEVEAQKAQQLEEARLQEEEQKKEELARLR ARLQEEEQKKEELARLRRELVHKANPIRKY R L Q A R L 1 1 0 0 0 2 5 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 13 2 1628.837 Q9ULW0 Q9ULW0 694 706 TPX2 Targeting protein for Xklp2 yes yes 3 0.028736 61.167 By MS/MS 2 0 1 1 1662200 0 1662200 0 8762 2193 9122 37452 31361 31361 1 0 748520 0 LQEELAASDR ESEKRLKGLEAEVLRLQEELAASDRARRQA AEVLRLQEELAASDRARRQAQQDRDEMADE R L Q D R A 2 1 0 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1130.5568 Q7Z406 Q7Z406 1709 1718 MYH14 Myosin-14 yes yes 2 0.00061699 115.71 By MS/MS 1.5 0.5 1 1 2 10500000 0 10500000 0 8763 1531 9123 37453;37454 31362 31362 1 0 5079900 0 LQEEMLQR ERDNLAEDIMRLREKLQEEMLQREEAENTL IMRLREKLQEEMLQREEAENTLQSFRQDVD K L Q Q R E 0 1 0 0 0 2 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1045.5226 P08670 P08670 189 196 VIM Vimentin yes yes 2 3.9588E-28 200.1 By matching By MS/MS By MS/MS 4.08 1.55 1 1 1 5 2 1 1 1 3 8 1158000000 17270000 215570000 925160000 8764 476 9124;9125 37455;37456;37457;37458;37459;37460;37461;37462;37463;37464;37465;37466 31363;31364;31365;31366;31367;31368;31369;31370;31371;31372;31373;31374 31369 185 12 13474000 68721000 147610000 LQEEMLQREEAENTLQSFR ERDNLAEDIMRLREKLQEEMLQREEAENTL MLQREEAENTLQSFRQDVDNASLARLDLER K L Q F R Q 1 2 1 0 0 3 5 0 0 0 3 0 1 1 0 1 1 0 0 0 0 0 19 1 2350.1223 P08670 P08670 189 207 VIM Vimentin yes yes 2;3 6.2699E-180 300.56 By MS/MS By MS/MS 4 1.13 1 1 5 4 6 5 180140000 0 51222000 128920000 8765 476 9126;9127 37467;37468;37469;37470;37471;37472;37473;37474;37475;37476;37477 31375;31376;31377;31378;31379;31380;31381;31382 31382 185 8 0 16125000 19920000 LQEKEDLQELNDR AQASSTPLSPTRITRLQEKEDLQELNDRLA TRLQEKEDLQELNDRLAVYIDRVRSLETEN R L Q D R L 0 1 1 2 0 2 3 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 13 1 1628.8006 P02545 P02545 29 41 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 8.1369E-72 247.3 By MS/MS By MS/MS 3.14 1.25 2 2 4 4 2 4 10 607650000 0 74705000 532940000 8766 387 9128 37478;37479;37480;37481;37482;37483;37484;37485;37486;37487;37488;37489;37490;37491 31383;31384;31385;31386;31387;31388;31389;31390;31391;31392;31393;31394;31395 31390 13 0 30430000 102110000 LQEKEELR AGGPTTPLSPTRLSRLQEKEELRELNDRLA SPTRLSRLQEKEELRELNDRLAVYIDKVRS R L Q L R E 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 1043.5611 P20700;Q03252 P20700 30 37 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.0046702 127.56 By MS/MS By MS/MS 3.86 2.03 1 1 2 1 1 1 1 6 185090000 0 30711000 154380000 8767 619;1156 9129 37492;37493;37494;37495;37496;37497;37498 31396;31397;31398 31396 3 0 13092000 29783000 LQEKEELRELNDR AGGPTTPLSPTRLSRLQEKEELRELNDRLA SRLQEKEELRELNDRLAVYIDKVRSLETEN R L Q D R L 0 2 1 1 0 1 4 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 13 2 1670.8588 P20700;Q03252 P20700 30 42 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 3;4 9.8796E-05 138.87 By MS/MS 3 0 2 2 15266000 0 15266000 0 8768 619;1156 9130 37499;37500 31399;31400 31399 2 0 6508000 0 LQELEGQIADLKK KDANQAKLSERRRKRLQELEGQIADLKKKL KRLQELEGQIADLKKKLNEQSKLLKLKEST R L Q K K K 1 0 0 1 0 2 2 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 13 1 1483.8246 O95239 O95239 602 614 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 0.027601 53.377 By matching By MS/MS 1.5 0.5 1 1 1 1 10413000 0 1576400 8836700 8769 314 9131 37501;37502 31401 31401 1 0 770500 1996900 LQELVDR DVLYAKVHMKDGSNRLQELVDRVLERFQAS HMKDGSNRLQELVDRVLERFQASGLIVKEW R L Q D R V 0 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 871.47633 Q8N9N2 Q8N9N2 278 284 ASCC1 Activating signal cointegrator 1 complex subunit 1 yes yes 2 0.041621 81.784 By MS/MS 5 0 1 1 4601200 0 4601200 0 8770 1617 9132 37503 31402 31402 1 0 1186000 0 LQEMEGTVK ARQQLERQNKELKVKLQEMEGTVKSKYKAS KELKVKLQEMEGTVKSKYKASITALEAKIA K L Q V K S 0 0 0 0 0 1 2 1 0 0 1 1 1 0 0 0 1 0 0 1 0 0 9 0 1033.5114 P35579 P35579 1794 1802 MYH9 Myosin-9 yes yes 2 0.00065644 133.58 By MS/MS 1 0 1 1 72259000 0 72259000 0 8771 752 9133 37504 31403 31403 1 0 35319000 0 LQEQLMGAVVMEKPNIR GSDSDSEGDNPEKKKLQEQLMGAVVMEKPN EQLMGAVVMEKPNIRWNDVAGLEGAKEALK K L Q I R W 1 1 1 0 0 2 2 1 0 1 2 1 2 0 1 0 0 0 0 2 0 0 17 1 1955.0332 Q9UN37 Q9UN37 109 125 VPS4A Vacuolar protein sorting-associated protein 4A yes yes 3 0.067871 32.181 By MS/MS 4 0 1 1 7680100 0 0 7680100 8772 2201 9134 37505 31404 31404 1 0 0 1254400 LQEQVTDLR EKAENEKIQNEQLEKLQEQVTDLRSQNTKI NEQLEKLQEQVTDLRSQNTKISTQLDFASK K L Q L R S 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1100.5826 P12270 P12270 700 708 TPR Nucleoprotein TPR yes yes 2 0.054072 70.332 By MS/MS 1 0 1 1 7767600 0 0 7767600 8773 536 9135 37506 31405 31405 1 0 0 1673600 LQESVMEASR QRDVIDEPIIEEPSRLQESVMEASRTNIDE EEPSRLQESVMEASRTNIDESAMPPPPPQG R L Q S R T 1 1 0 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 10 0 1148.5496 O60216 O60216 451 460 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 0.00020094 120.99 By MS/MS 2.33 1.25 1 1 1 3 14769000 0 0 14769000 8774 219 9136 37507;37508;37509 31406;31407;31408 31407 2 0 0 2968700 LQETSSQSYVEEQK YVDEENSDGETSNHRLQETSSQSYVEEQKQ RLQETSSQSYVEEQKQLKESFRAFVEDSED R L Q Q K Q 0 0 0 0 0 3 3 0 0 0 1 1 0 0 0 3 1 0 1 1 0 0 14 0 1654.7686 Q8N9T8 Q8N9T8 145 158 KRI1 Protein KRI1 homolog yes yes 2 0.00047028 146.16 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 17056000 0 3013500 14042000 8775 1619 9137 37510;37511;37512;37513 31409;31410;31411 31410 3 0 1357000 2862700 LQFLFAK MRHQKRNVYHCNKCRLQFLFAKDKIEHKLQ VYHCNKCRLQFLFAKDKIEHKLQHHKTFRK R L Q A K D 1 0 0 0 0 1 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 7 0 865.50617 Q7Z3K3 Q7Z3K3 654 660 POGZ Pogo transposable element with ZNF domain yes yes 2 0.040085 83.287 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 4973000 0 2055100 2917900 8776 1530 9138 37514;37515 31412;31413 31412 2 0 925460 628700 LQGDANNLHGFEVDSR TRLSAYVSYGGLLMRLQGDANNLHGFEVDS QGDANNLHGFEVDSRVYLLMKKLAF_____ R L Q S R V 1 1 2 2 0 1 1 2 1 0 2 0 0 1 0 1 0 0 0 1 0 0 16 0 1770.8285 P52434 P52434 125 140 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes yes 2;3 1.0368E-05 154.1 By matching By MS/MS 8.6 0.8 3 1 1 1 4 31490000 0 2037000 29453000 8777 907 9139 37516;37517;37518;37519;37520 31414;31415 31415 2 0 926770 7209300 LQGEIAHVK EIKIEISELNRVIQRLQGEIAHVKKQCKNV NRVIQRLQGEIAHVKKQCKNVQDAIADAEQ R L Q V K K 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 9 0 993.56073 CON__P35908;CON__P35908v2;P35908 CON__P35908 412 420 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00037662 134.48 By MS/MS By MS/MS 5.11 2.75 2 2 2 2 2 2 2 1 2 1 11 7 764170000 583150000 0 181020000 + 8778 65;66 9140 37521;37522;37523;37524;37525;37526;37527;37528;37529;37530;37531;37532;37533;37534;37535;37536;37537;37538 31416;31417;31418;31419;31420;31421;31422;31423;31424;31425;31426;31427;31428;31429;31430;31431;31432;31433;31434;31435;31436;31437;31438;31439;31440;31441;31442;31443;31444;31445;31446;31447;31448;31449;31450;31451;31452 31433 37 626140000 0 33449000 LQGGLSQLSFPLSVEPALGPYK LNPKRNRIFQWPSFKLQGGLSQLSFPLSVE LSFPLSVEPALGPYKVVLLKEPGKRIEHSF K L Q Y K V 1 0 0 0 0 2 1 3 0 0 5 1 0 1 3 3 0 0 1 1 0 0 22 0 2300.2416 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 185 206 yes yes 2;3 6.1173E-19 126.48 By MS/MS By MS/MS By MS/MS 6.09 2.35 1 2 2 1 4 4 6 2 2 12 8 112490000 6116600 28651000 77723000 + 8779 30 9141 37539;37540;37541;37542;37543;37544;37545;37546;37547;37548;37549;37550;37551;37552;37553;37554;37555;37556;37557;37558;37559;37560 31453;31454;31455;31456;31457;31458;31459;31460;31461;31462;31463;31464;31465;31466;31467;31468;31469;31470;31471;31472;31473 31454 21 5251300 11952000 12985000 LQGHPNSAVLMVQWLK PLHTIIPLLQELTKRLQGHPNSAVLMVQWL QGHPNSAVLMVQWLKCVLTVHASYLSTLPD R L Q L K C 1 0 1 0 0 2 0 1 1 0 3 1 1 0 1 1 0 1 0 2 0 0 16 0 1819.9767 Q15061 Q15061 513 528 WDR43 WD repeat-containing protein 43 yes yes 3 6.7909E-05 98.654 By MS/MS 3 0 1 1 5679500 0 5679500 0 8780 1343 9142 37561 31474 31474 1 0 2421200 0 LQGMVTETTMK KLQRQFSDKRRLEARLQGMVTETTMKWEKE LEARLQGMVTETTMKWEKECERRVAAKQLE R L Q M K W 0 0 0 0 0 1 1 1 0 0 1 1 2 0 0 0 3 0 0 1 0 0 11 0 1237.6046 Q02241 Q02241 614 624 KIF23 Kinesin-like protein KIF23 yes yes 2 0.0084099 94.309 By MS/MS 2 0 1 1 6020200 0 0 6020200 8781 1145 9143 37562 31475 31475 1 0 0 1360400 LQGQITEGSNMIK RRAQARASEDLEKLRLQGQITEGSNMIKTI LRLQGQITEGSNMIKTIAFGRYELDTWYHS R L Q I K T 0 0 1 0 0 2 1 2 0 2 1 1 1 0 0 1 1 0 0 0 0 0 13 0 1417.7235 O95251 O95251 326 338 KAT7 Histone acetyltransferase KAT7 yes yes 2 2.9895E-05 160.53 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 39287000 3583800 11005000 24699000 8782 316 9144 37563;37564;37565;37566 31476;31477 31477 2 4134800 4691400 4712300 LQGQLEQGDDTAAER RADTKRLKLLEEERRLQGQLEQGDDTAAER LQGQLEQGDDTAAERLEKVYEELRATGAAA R L Q E R L 2 1 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 15 0 1629.7594 Q8NE71 Q8NE71 397 411 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 5.3947E-25 198.81 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 32199000 0 8781200 23418000 8783 1638 9145 37567;37568;37569;37570 31478;31479;31480;31481 31480 4 0 3954300 4954800 LQHLENELTHDIITK LGNATAIFFLPDEGKLQHLENELTHDIITK LQHLENELTHDIITKFLENEDRRSASLHLP K L Q T K F 0 0 1 1 0 1 2 0 2 2 3 1 0 0 0 0 2 0 0 0 0 0 15 0 1802.9527 P01009 P01009 284 298 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 4 0.0072039 61.641 By MS/MS 9.5 0.5 1 1 2 24257000 24257000 0 0 8784 367 9146 37571;37572 31482 31482 1 15860000 0 0 LQHVEDGVLSMQVASAR AFEALQQKSQGLDSRLQHVEDGVLSMQVAS HVEDGVLSMQVASARQTESLESLLSKSQEH R L Q A R Q 2 1 0 1 0 2 1 1 1 0 2 0 1 0 0 2 0 0 0 3 0 0 17 0 1838.9309 Q07065 Q07065 413 429 CKAP4 Cytoskeleton-associated protein 4 yes yes 3 0.03629 38.377 By MS/MS 3 0 1 1 17075000 0 17075000 0 8785 1176 9147 37573 31483 31483 1 0 7279100 0 LQIASDENYKDPTNLQGK FQRDAEELEKWIQEKLQIASDENYKDPTNL ASDENYKDPTNLQGKLQKHQAFEAEVQANS K L Q G K L 1 0 2 2 0 2 1 1 0 1 2 2 0 0 1 1 1 0 1 0 0 0 18 1 2033.0065 Q13813 Q13813 64 81 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 7.6504E-52 227.57 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 122040000 0 52471000 69566000 8786 1268 9148 37574;37575;37576;37577 31484;31485;31486 31485 3 0 25381000 14989000 LQIDEQLR HIAYLKEVEQLRMERLQIDEQLRQIGSRSY EQLRMERLQIDEQLRQIGSRSYSGRGRGRR R L Q L R Q 0 1 0 1 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 1013.5506 P51116;Q06787;P51114 P51114 369 376 FXR2;FMR1;FXR1 Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 1 no no 2 8.182E-09 166.05 By MS/MS 3 0 1 1 57240000 0 57240000 0 8787 887;888;1172 9149 37578 31487 31487 1 0 24402000 0 LQIEESSKPVR ECRPAASENYMRLKRLQIEESSKPVRLSQQ RLKRLQIEESSKPVRLSQQLDKVVTTNYKP R L Q V R L 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 2 0 0 0 1 0 0 11 1 1284.7038 P13984 P13984 130 140 GTF2F2 General transcription factor IIF subunit 2 yes yes 3 0.00027939 112.13 By MS/MS 6 0 1 1 11797000 0 0 11797000 8788 554 9150 37579 31488 31488 1 0 0 1765000 LQIELGK DARRALDDTARERAKLQIELGKCKAEHDQL DTARERAKLQIELGKCKAEHDQLLLNYAKK K L Q G K C 0 0 0 0 0 1 1 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 7 0 799.48035 P20700 P20700 103 109 LMNB1 Lamin-B1 yes yes 2 0.010174 120.52 By matching By MS/MS By MS/MS 3.67 2.21 3 1 3 1 2 2 1 5 6 629050000 1097900 188430000 439520000 8789 619 9151 37580;37581;37582;37583;37584;37585;37586;37587;37588;37589;37590;37591 31489;31490;31491;31492;31493;31494;31495;31496;31497 31490 9 1097900 80455000 85105000 LQIFSVEGQK VEKTIKLLPSSHVARLQIFSVEGQKAIQIK SHVARLQIFSVEGQKAIQIKHQDEVNWIAG R L Q Q K A 0 0 0 0 0 2 1 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1147.6237 A6NHR9 A6NHR9 1039 1048 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00025246 140.63 By MS/MS By matching 1.5 0.5 1 1 1 1 13352000 0 10564000 2788300 8790 15 9152 37592;37593 31498 31498 1 0 5163400 630100 LQILNLGAK RKMAKSFTSEDDLVKLQILNLGAKLYLTNS EDDLVKLQILNLGAKLYLTNSKQTKLLTQY K L Q A K L 1 0 1 0 0 1 0 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 9 0 968.60187 O00203 O00203 534 542 AP3B1 AP-3 complex subunit beta-1 yes yes 2 8.8402E-05 143.85 By MS/MS 2 0 1 1 13178000 0 0 13178000 8791 111 9153 37594 31499 31499 1 0 0 2978000 LQILSLR NDFEILPPDIGKLTKLQILSLRDNDLISLP PDIGKLTKLQILSLRDNDLISLPKEIGELT K L Q L R D 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 0 0 0 0 0 0 7 0 841.53854 Q15404 Q15404 159 165 RSU1 Ras suppressor protein 1 yes yes 2 0.0022305 146.01 By MS/MS 6 0 1 1 3397000 0 0 3397000 8792 1363 9154 37595 31500 31500 1 0 0 508230 LQILTSYLR DEDEYKSEDLSVLEKLQILTSYLREEHLYC LSVLEKLQILTSYLREEHLYCIWCGTAYED K L Q L R E 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1105.6495 Q8N954 Q8N954 245 253 GPATCH11 G patch domain-containing protein 11 yes yes 2 0.00074884 132.08 By matching By MS/MS 6 0 2 1 1 12011000 5915100 0 6095400 8793 1616 9155 37596;37597 31501 31501 1 7876000 0 911940 LQIPEEER VCEGLRTQIRELWDRLQIPEEEREAVATIM IRELWDRLQIPEEEREAVATIMSGSKAKVR R L Q E R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 8 0 1012.5189 O43663 O43663 250 257 PRC1 Protein regulator of cytokinesis 1 yes yes 2 0.012025 101.33 By MS/MS 3.5 0.5 1 1 2 4833800 0 0 4833800 8794 206 9156 37598;37599 31502;31503 31502 2 0 0 789520 LQIQLPDSVNQLLR HLAWFGDSLTSLSQRLQIQLPDSVNQLLRY RLQIQLPDSVNQLLRYLRELPLLFHQNVLL R L Q L R Y 0 1 1 1 0 3 0 0 0 1 4 0 0 0 1 1 0 0 0 1 0 0 14 0 1635.9308 Q6NUQ4 Q6NUQ4 598 611 TMEM214 Transmembrane protein 214 yes yes 2 0.0011779 108.7 By MS/MS 3 0 1 1 4945400 0 0 4945400 8795 1481 9157 37600 31504 31504 1 0 0 959160 LQIVEMPLAHK HRTGLYNYYDDEKEKLQIVEMPLAHKLSSL EKEKLQIVEMPLAHKLSSLIILMPHHVEPL K L Q H K L 1 0 0 0 0 1 1 0 1 1 2 1 1 0 1 0 0 0 0 1 0 0 11 0 1277.7166 P50454 P50454 253 263 SERPINH1 Serpin H1 yes yes 2;3 0.015892 78.934 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 29385000 0 8307700 21078000 8796 879 9158 37601;37602;37603 31505;31506;31507 31505 3 0 2141500 3064900 LQIWDTAGQESFR EFGARMITIDGKQIKLQIWDTAGQESFRSI IKLQIWDTAGQESFRSITRSYYRGAAGALL K L Q F R S 1 1 0 1 0 2 1 1 0 1 1 0 0 1 0 1 1 1 0 0 0 0 13 0 1549.7525 P61019;Q8WUD1 P61019 57 69 RAB2A;RAB2B Ras-related protein Rab-2A;Ras-related protein Rab-2B yes no 2 2.9688E-07 166.97 By matching By MS/MS 6 0.707 1 2 1 2 2 15814000 4045100 0 11769000 8797 975 9159 37604;37605;37606;37607 31508 31508 1 4511700 0 2031400 LQLDLSSINISAK ALRRRYPQIYTTSEKLQLDLSSINISAKDF EKLQLDLSSINISAKDFEVAMQKMIPASQR K L Q A K D 1 0 1 1 0 1 0 0 0 2 3 1 0 0 0 3 0 0 0 0 0 0 13 0 1400.7875 Q6PL18 Q6PL18 665 677 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.018017 79.82 By MS/MS 1 0 1 1 5559100 0 0 5559100 8798 1498 9160 37608 31509 31509 1 0 0 1197800 LQLEATER ERSRLRIEEEIRVVRLQLEATERQRGGAEG EEIRVVRLQLEATERQRGGAEGELQALRAR R L Q E R Q 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 958.50836 Q15149 Q15149 1596 1603 PLEC Plectin yes yes 2 6.9097E-06 129.55 By matching By MS/MS By MS/MS 1 0 3 1 1 1 20442000 745050 19696000 0 8799 1348 9161 37609;37610;37611 31510;31511 31511 2 745050 9627400 0 LQLEETMPSPYGR GKAIKGKVGKPKVKKLQLEETMPSPYGRRI KKLQLEETMPSPYGRRIIPEITAMKADASK K L Q G R R 0 1 0 0 0 1 2 1 0 0 2 0 1 0 2 1 1 0 1 0 0 0 13 0 1519.7341 Q02880 Q02880 1228 1240 TOP2B DNA topoisomerase 2-beta yes yes 2 0.00016964 150.04 By MS/MS By MS/MS 1 0 2 1 1 10851000 0 2895600 7955300 8800 1150 9162 37612;37613 31512;31513 31513 2 0 1415300 1714100 LQLELSK DARKTLDSVAKERARLQLELSKVREEFKEL SVAKERARLQLELSKVREEFKELKARNTKK R L Q S K V 0 0 0 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 829.49092 P02545 P02545 102 108 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.0025389 143.56 By matching By MS/MS By MS/MS 3.85 2.6 3 2 2 2 1 1 1 1 3 5 5 737330000 5152200 212600000 519580000 8801 387 9163 37614;37615;37616;37617;37618;37619;37620;37621;37622;37623;37624;37625;37626 31514;31515;31516;31517;31518;31519;31520;31521;31522;31523;31524 31519 11 6618600 86291000 99424000 LQLETEIEALKEELLFMK IHGLRKVIDDTNITRLQLETEIEALKEELL ETEIEALKEELLFMKKNHEEEVKGLQAQIA R L Q M K K 1 0 0 0 0 1 5 0 0 1 5 2 1 1 0 0 1 0 0 0 0 0 18 1 2176.1701 CON__P05784;P05783 P05783 197 214 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 4.0635E-09 150.12 By MS/MS 3.44 1.26 1 1 2 3 2 9 190890000 0 0 190890000 + 8802 436;48 9164;9165 37627;37628;37629;37630;37631;37632;37633;37634;37635 31525;31526;31527;31528;31529;31530 31529 23 6 0 0 31267000 LQLLEDDKENR LGLVDIVKGTNSYYKLQLLEDDKENRYWIF SYYKLQLLEDDKENRYWIFRSWGRVGTVIG K L Q N R Y 0 1 1 2 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1371.6994 P09874 P09874 572 582 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.1981E-34 207.29 By MS/MS By MS/MS 2.5 1.26 3 4 2 2 1 3 9 853270000 0 56165000 797100000 8803 492 9166 37636;37637;37638;37639;37640;37641;37642;37643;37644;37645;37646;37647 31531;31532;31533;31534;31535;31536;31537;31538;31539 31535 8 0 25436000 175100000 LQLLEDDKENRYWIFR LGLVDIVKGTNSYYKLQLLEDDKENRYWIF QLLEDDKENRYWIFRSWGRVGTVIGSNKLE K L Q F R S 0 2 1 2 0 1 2 0 0 1 3 1 0 1 0 0 0 1 1 0 0 0 16 2 2137.0956 P09874 P09874 572 587 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 0.00819 62.165 By MS/MS 2 0 1 1 2832200 0 2832200 0 8804 492 9167 37648 31540 31540 1 0 1275400 0 LQLLNPEIEAEQILMSPNSYIK ARELSDEIQVQVFEKLQLLNPEIEAEQILM IEAEQILMSPNSYIKLQTNRDGAASLSYRV K L Q I K L 1 0 2 0 0 2 3 0 0 3 4 1 1 0 2 2 0 0 1 0 0 0 22 0 2542.3353 Q8TEM1 Q8TEM1 1286 1307 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.00090963 61.345 By MS/MS 1 0 1 1 1777900 0 0 1777900 8805 1666 9168 37649 31541 31541 1 0 0 383080 LQLLTWTPLEAK YIGLCLPKLFNPLIRLQLLTWTPLEAKCRD LIRLQLLTWTPLEAKCRDFENMLWFESLLF R L Q A K C 1 0 0 0 0 1 1 0 0 0 4 1 0 0 1 0 2 1 0 0 0 0 12 0 1411.8075 Q9Y5B6 Q9Y5B6 632 643 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 5.7164E-08 167.12 By MS/MS By MS/MS 2 0 2 1 1 7819800 0 1547400 6272400 8806 2295 9169 37650;37651 31542;31543 31543 2 0 696810 1417400 LQLPVWEYKDR NLPHTPRYYDILKKRLQLPVWEYKDRFTDI LKKRLQLPVWEYKDRFTDILVRHQSFVLVG R L Q D R F 0 1 0 1 0 1 1 0 0 0 2 1 0 0 1 0 0 1 1 1 0 0 11 1 1445.7667 O43143 O43143 135 145 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 0.00098684 103.08 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 21114000 0 9270900 11843000 8807 186 9170 37652;37653;37654 31544;31545;31546 31546 3 0 4121200 2296900 LQLSLADFR GSATNYITRNKARKKLQLSLADFRRLCILK NKARKKLQLSLADFRRLCILKGIYPHEPKH K L Q F R R 1 1 0 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 9 0 1061.5869 O00541 O00541 27 35 PES1 Pescadillo homolog yes yes 2 6.5122E-06 152.63 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 42751000 0 9191200 33559000 8808 127 9171 37655;37656;37657 31547;31548 31548 2 0 3918200 6463300 LQLSLADFRR GSATNYITRNKARKKLQLSLADFRRLCILK KARKKLQLSLADFRRLCILKGIYPHEPKHK K L Q R R L 1 2 0 1 0 1 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 10 1 1217.6881 O00541 O00541 27 36 PES1 Pescadillo homolog yes yes 3 0.00017119 111.06 By MS/MS 3 0 1 1 1771700 0 1771700 0 8809 127 9172 37658 31549 31549 1 0 755290 0 LQLWDTAGQER DFLSKTMYLEDRTVRLQLWDTAGQERFRSL RTVRLQLWDTAGQERFRSLIPSYIRDSTVA R L Q E R F 1 1 0 1 0 2 1 1 0 0 2 0 0 0 0 0 1 1 0 0 0 0 11 0 1315.6521 P20340;Q9NRW1;Q14964 P20340 64 74 RAB6A;RAB6B;RAB39A Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A yes no 2 3.6217E-05 147.2 By MS/MS By MS/MS 8.29 1.28 3 1 1 2 2 5 114700000 0 4898700 109800000 8810 615 9173 37659;37660;37661;37662;37663;37664;37665 31550;31551;31552;31553;31554 31554 5 0 17669000 44939000 LQMEAPHIIVGTPGR HACIGGTNVRAEVQKLQMEAPHIIVGTPGR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI K L Q G R V 1 1 0 0 0 1 1 2 1 2 1 0 1 0 2 0 1 0 0 1 0 0 15 0 1617.8661 P60842 P60842 147 161 EIF4A1 Eukaryotic initiation factor 4A-I yes yes 2;3 0.00030837 148.13 By MS/MS By MS/MS 5.5 0.707 5 2 1 3 5 108720000 0 52532000 56191000 8811 967 9174;9175 37666;37667;37668;37669;37670;37671;37672;37673 31555;31556;31557;31558;31559 31559 468 5 0 13541000 8214200 LQMEQQQQLQQR SFMILVLPVVFETEKLQMEQQQQLQQRQIL TEKLQMEQQQQLQQRQILLGPNTGLSGGMP K L Q Q R Q 0 1 0 0 0 7 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 12 0 1556.7729 Q9NS69 Q9NS69 106 117 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 2 1.119E-06 163.32 By MS/MS 7.5 0.5 1 1 2 8135900 0 0 8135900 8812 2051 9176 37674;37675 31560 31560 1 0 0 1317400 LQNALNEQR DLALEKAARAELEMRLQNALNEQRVEFATL AELEMRLQNALNEQRVEFATLQEALAHALT R L Q Q R V 1 1 2 0 0 2 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1084.5625 Q14980 Q14980 1034 1042 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 1.0149E-34 178.83 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 5900600 2039800 0 3860800 8813 1327 9177 37676;37677;37678 31561;31562;31563;31564 31563 4 2039800 0 831860 LQNALNEQRVEFATLQEALAHALTEK DLALEKAARAELEMRLQNALNEQRVEFATL FATLQEALAHALTEKEGKDQELAKLRGLEA R L Q E K E 5 1 2 0 0 3 4 0 1 0 5 1 0 1 0 0 2 0 0 1 0 0 26 1 2936.5356 Q14980 Q14980 1034 1059 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 4 0.00013875 55.67 By MS/MS 1 0 1 1 6891200 0 0 6891200 8814 1327 9178 37679 31565 31565 1 0 0 1484800 LQNELDNVSTLLEEAEK EGDRLRVELAEKASKLQNELDNVSTLLEEA NELDNVSTLLEEAEKKGIKFAKDAASLESQ K L Q E K K 1 0 2 1 0 1 4 0 0 0 4 1 0 0 0 1 1 0 0 1 0 0 17 0 1943.9688 P35580 P35580 1285 1301 MYH10 Myosin-10 yes yes 2;3 4.0104E-06 151.74 By MS/MS By MS/MS 1 0 2 1 1 13876000 0 2102500 11773000 8815 753 9179 37680;37681 31566;31567 31567 2 0 1027700 2536800 LQNELDNVSTLLEEAEKK EGDRLRVELAEKASKLQNELDNVSTLLEEA ELDNVSTLLEEAEKKGIKFAKDAASLESQL K L Q K K G 1 0 2 1 0 1 4 0 0 0 4 2 0 0 0 1 1 0 0 1 0 0 18 1 2072.0637 P35580 P35580 1285 1302 MYH10 Myosin-10 yes yes 2;3 8.847E-12 166.6 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 45170000 0 11546000 33625000 8816 753 9180 37682;37683;37684;37685 31568;31569;31570 31570 3 0 5643300 7283500 LQNIFLGLVNIIEEK AWEDWAIYPEPFLIKLQNIFLGLVNIIEEK LQNIFLGLVNIIEEKETEDVPDDLDGAPIE K L Q E K E 0 0 2 0 0 1 2 1 0 3 3 1 0 1 0 0 0 0 0 1 0 0 15 0 1741.9978 O15042 O15042 671 685 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2;3 9.2743E-05 129.34 By MS/MS 1.5 0.5 2 2 4 41223000 0 0 41223000 8817 163 9181 37686;37687;37688;37689 31571;31572;31573 31572 3 0 0 9297900 LQNIMMLLR VVEVNIPVESEVNLKLQNIMMLLRKCCNHP SEVNLKLQNIMMLLRKCCNHPYLIEYPIDP K L Q L R K 0 1 1 0 0 1 0 0 0 1 3 0 2 0 0 0 0 0 0 0 0 0 9 0 1130.6304 Q9NRZ9 Q9NRZ9 560 568 HELLS Lymphoid-specific helicase yes yes 2 0.00066564 129.39 By MS/MS 2 0 1 1 2286900 0 0 2286900 8818 2050 9182 37690 31574 31574 1 0 0 516790 LQNKEHVIEALR ARVHIGQVIMSIRTKLQNKEHVIEALRRAK RTKLQNKEHVIEALRRAKFKFPGRQKIHIS K L Q L R R 1 1 1 0 0 1 2 0 1 1 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1448.81 P27635 P27635 142 153 RPL10 60S ribosomal protein L10 yes yes 3 0.0047223 84.365 By MS/MS By matching 7 0 2 1 1 31017000 0 20579000 10438000 8819 678 9183 37691;37692 31575 31575 1 0 11817000 1852100 LQNKEHVIEALRR ARVHIGQVIMSIRTKLQNKEHVIEALRRAK TKLQNKEHVIEALRRAKFKFPGRQKIHISK K L Q R R A 1 2 1 0 0 1 2 0 1 1 2 1 0 0 0 0 0 0 0 1 0 0 13 2 1604.9111 P27635 P27635 142 154 RPL10 60S ribosomal protein L10 yes yes 4 0.003521 83.617 By MS/MS 7 0.816 1 1 1 3 17741000 0 17741000 0 8820 678 9184 37693;37694;37695 31576 31576 1 0 9580500 0 LQNSASATALVSR TTPRGVLHTFSPSPKLQNSASATALVSRTG PKLQNSASATALVSRTGRHSERTVSAGKGS K L Q S R T 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 3 1 0 0 1 0 0 13 0 1316.7048 Q86YP4 Q86YP4 551 563 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.021414 70.488 By MS/MS 3 0 1 1 9842200 0 0 9842200 8821 1563 9185 37696 31577 31577 0 0 0 1908900 LQNVQIALDYLR GDSLPREKGRMRFHKLQNVQIALDYLRHRQ FHKLQNVQIALDYLRHRQVKLVNIRNDDIA K L Q L R H 1 1 1 1 0 2 0 0 0 1 3 0 0 0 0 0 0 0 1 1 0 0 12 0 1444.8038 Q15149 Q15149 237 248 PLEC Plectin yes yes 2 3.705E-06 161.76 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 20813000 0 10384000 10429000 8822 1348 9186 37697;37698;37699 31578;31579 31579 2 0 5075400 2256200 LQPEEADVPAYPK ANSGELDKMDEKRTRLQPEEADVPAYPKVA TRLQPEEADVPAYPKVATVPQSEKKPSKYP R L Q P K V 2 0 0 1 0 1 2 0 0 0 1 1 0 0 3 0 0 0 1 1 0 0 13 0 1455.7246 Q9BTC0 Q9BTC0 1218 1230 DIDO1 Death-inducer obliterator 1 yes yes 2 0.018611 79.201 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 19277000 0 2973100 16303000 8823 1900 9187 37700;37701;37702 31580;31581;31582 31582 3 0 1453200 3570800 LQPFATEADVEEALR LEAIVRIAEALSKMKLQPFATEADVEEALR LQPFATEADVEEALRLFQVSTLDAALSGTL K L Q L R L 3 1 0 1 0 1 3 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 15 0 1687.8417 P33992 P33992 628 642 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.00035372 117.98 By matching By MS/MS 3 0 2 1 1 8969400 1532300 0 7437200 8824 732 9188 37703;37704 31583 31583 1 1767900 0 1442500 LQPGSLPQVLAQATEMLYMR HIDVMYTTLLIELCKLQPGSLPQVLAQATE LPQVLAQATEMLYMRLDTMNTTCVDRFINW K L Q M R L 2 1 0 0 0 3 1 1 0 0 4 0 2 0 2 1 1 0 1 1 0 0 20 0 2245.1599 Q09161 Q09161 382 401 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2;3 2.8498E-10 112.72 By MS/MS 3 0 2 2 12343000 0 0 12343000 8825 1189 9189 37705;37706 31584;31585 31584 2 0 0 2393900 LQPHPQLSPEIR DLATDQKEALLELLRLQPHPQLSPEIRREL LLRLQPHPQLSPEIRRELQSAVPRDVEDVP R L Q I R R 0 1 0 0 0 2 1 0 1 1 2 0 0 0 3 1 0 0 0 0 0 0 12 0 1413.7728 Q13895 Q13895 407 418 BYSL Bystin yes yes 3 0.052306 44.511 By MS/MS 5 0 1 1 11994000 0 11994000 0 8826 1276 9190 37707 31586 31586 1 0 3091600 0 LQPSSTSESMDQLLNK RKQIDDLKKFKNDFRLQPSSTSESMDQLLN QPSSTSESMDQLLNKNREGEKSRDLIKDKI R L Q N K N 0 0 1 1 0 2 1 0 0 0 3 1 1 0 1 4 1 0 0 0 0 0 16 0 1776.8564 Q99700 Q99700 806 821 ATXN2 Ataxin-2 yes yes 2 0.0057807 78.705 By MS/MS 2 0 1 1 4889400 0 4889400 0 8827 1858 9191 37708 31587 31587 1 0 2201800 0 LQQELDDATMDLEQQR EKTETVDRLERGRRRLQQELDDATMDLEQQ QQELDDATMDLEQQRQLVSTLEKKQRKFDQ R L Q Q R Q 1 1 0 3 0 4 2 0 0 0 3 0 1 0 0 0 1 0 0 0 0 0 16 0 1931.8895 Q7Z406 Q7Z406 1442 1457 MYH14 Myosin-14 yes yes 2 3.4717E-05 126.1 By MS/MS 1 0 1 1 1756800 0 1756800 0 8828 1531 9192 37709 31588 31588 1 0 858700 0 LQQELDDLLVDLDHQR EKVAAYDKLEKTKTRLQQELDDLLVDLDHQ QQELDDLLVDLDHQRQSACNLEKKQKKFDQ R L Q Q R Q 0 1 0 4 0 3 1 0 1 0 5 0 0 0 0 0 0 0 0 1 0 0 16 0 1948.9854 P35579 P35579 1418 1433 MYH9 Myosin-9 yes yes 2;3 5.7339E-19 193.62 By MS/MS By MS/MS 1.71 0.7 3 3 1 2 5 129640000 0 29961000 99675000 8829 752 9193 37710;37711;37712;37713;37714;37715;37716 31589;31590;31591;31592;31593 31592 5 0 14080000 21592000 LQQELDDLTVDLDHQR EKALAYDKLEKTKNRLQQELDDLTVDLDHQ QQELDDLTVDLDHQRQVASNLEKKQKKFDQ R L Q Q R Q 0 1 0 4 0 3 1 0 1 0 4 0 0 0 0 0 1 0 0 1 0 0 16 0 1936.949 P35580 P35580 1425 1440 MYH10 Myosin-10 yes yes 2;3 1.2661E-108 262.56 By MS/MS By MS/MS 1 0 3 1 2 71509000 0 15577000 55932000 8830 753 9194 37717;37718;37719 31594;31595;31596 31596 3 0 7613900 12052000 LQQENSILR LQEQLENGPNTQLARLQQENSILRDALNQA NTQLARLQQENSILRDALNQATSQVESKQN R L Q L R D 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1099.5986 Q9P2E9;Q8N4C6 Q9P2E9 798 806 RRBP1;NIN Ribosome-binding protein 1;Ninein yes no 2 0.0005177 135.83 By MS/MS 1 0 1 1 7509500 0 0 7509500 8831 2122 9195 37720 31597 31597 1 0 0 1618000 LQQESTFLFHGNK VAAETQSPSLFGSTKLQQESTFLFHGNKTE TKLQQESTFLFHGNKTEDTPDKKMEVASEK K L Q N K T 0 0 1 0 0 2 1 1 1 0 2 1 0 2 0 1 1 0 0 0 0 0 13 0 1547.7732 Q9UKX7 Q9UKX7 230 242 NUP50 Nuclear pore complex protein Nup50 yes yes 2 0.00034328 85.355 By MS/MS 4 0 1 1 0 0 0 0 8832 2185 9196 37721 31598 31598 1 0 0 0 LQQFFNER HNSFEQFCINYCNEKLQQFFNERILKEEQE INYCNEKLQQFFNERILKEEQELYQKEGLG K L Q E R I 0 1 1 0 0 2 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 8 0 1080.5352 Q9UM54 Q9UM54 480 487 MYO6 Unconventional myosin-VI yes yes 2 0.00029171 132.57 By MS/MS 2 0 1 1 7367400 0 7367400 0 8833 2198 9197 37722 31599 31599 1 0 3317700 0 LQQGAGLESPQGQPEPGAASPQR GSPERPPKTSPGSPRLQQGAGLESPQGQPE SPQGQPEPGAASPQRQQDLHLESPQRQPEY R L Q Q R Q 3 1 0 0 0 5 2 4 0 0 2 0 0 0 4 2 0 0 0 0 0 0 23 0 2302.1302 Q9H6F5 Q9H6F5 72 94 CCDC86 Coiled-coil domain-containing protein 86 yes yes 3 6.8097E-05 72.058 By MS/MS 4 0 1 1 7887500 0 7887500 0 8834 1986 9198 37723 31600 31600 1 0 2617600 0 LQQLALGR SLSPGGAALGYRDYRLQQLALGRLPPPPPP LGYRDYRLQQLALGRLPPPPPPPLPRDLER R L Q G R L 1 1 0 0 0 2 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 8 0 897.5396 Q96T37 Q96T37 307 314 RBM15 Putative RNA-binding protein 15 yes yes 2 0.00024955 135.87 By MS/MS By MS/MS 2 0 2 1 1 8331500 0 4084100 4247400 8835 1838 9199 37724;37725 31601;31602 31601 2 0 1839100 959830 LQQLEDKLNNELLAK VGNVTACFILPDLGKLQQLEDKLNNELLAK LQQLEDKLNNELLAKFLEKKYASSANLHLP K L Q A K F 1 0 2 1 0 2 2 0 0 0 5 2 0 0 0 0 0 0 0 0 0 0 15 1 1767.9731 CON__P34955 CON__P34955 282 296 yes yes 2;3 2.6677E-126 271.04 By MS/MS By MS/MS By MS/MS 5.77 2.56 1 1 2 5 2 2 2 3 2 2 11 2 9 320300000 159630000 31957000 128720000 + 8836 64 9200 37726;37727;37728;37729;37730;37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742;37743;37744;37745;37746;37747 31603;31604;31605;31606;31607;31608;31609;31610;31611;31612;31613;31614 31604 12 134500000 51327000 23661000 LQQLFNHTMFILEQEEYQR LNSFEQLCINYTNEKLQQLFNHTMFILEQE FNHTMFILEQEEYQREGIEWNFIDFGLDLQ K L Q Q R E 0 1 1 0 0 4 3 0 1 1 3 0 1 2 0 0 1 0 1 0 0 0 19 0 2466.2002 P35579;P35580 P35579 476 494 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 1.0662E-09 148.44 By MS/MS By MS/MS 1 0 2 1 1 35248000 0 5681300 29567000 8837 752;753 9201;9202 37748;37749 31615;31616 31616 353 2 0 2776900 6370700 LQQLGEAHQAETEVLR ELEEERAGRKGLEARLQQLGEAHQAETEVL QQLGEAHQAETEVLRRELAEAMAAQHTAES R L Q L R R 2 1 0 0 0 3 3 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 16 0 1820.9381 Q14980 Q14980 771 786 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 2.9838E-36 215.87 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 113960000 0 21323000 92640000 8838 1327 9203 37750;37751;37752;37753 31617;31618;31619 31619 3 0 10422000 20029000 LQQLGEAHQAETEVLRR ELEEERAGRKGLEARLQQLGEAHQAETEVL QLGEAHQAETEVLRRELAEAMAAQHTAESE R L Q R R E 2 2 0 0 0 3 3 1 1 0 3 0 0 0 0 0 1 0 0 1 0 0 17 1 1977.0392 Q14980 Q14980 771 787 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3;4 1.6959E-06 146.78 By MS/MS 1 0 2 2 69322000 0 0 69322000 8839 1327 9204 37754;37755 31620;31621 31620 2 0 0 14936000 LQQLKDETGELSSADEKR HNQIRNMDSMPELQKLQQLKDETGELSSAD LKDETGELSSADEKRYRALKRTAERELLMN K L Q K R Y 1 1 0 2 0 2 3 1 0 0 3 2 0 0 0 2 1 0 0 0 0 0 18 2 2046.0229 Q92900 Q92900 588 605 UPF1 Regulator of nonsense transcripts 1 yes yes 3;4 1.2537E-08 111.66 By MS/MS 2 0 2 2 11910000 0 11910000 0 8840 1729 9205 37756;37757 31622;31623 31623 2 0 5363300 0 LQQLPADFGR CGLTHLVKLDLSKNKLQQLPADFGRLVNLQ LSKNKLQQLPADFGRLVNLQHLDLLNNKLV K L Q G R L 1 1 0 1 0 2 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1143.6037 Q96AG4 Q96AG4 74 83 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 1.6724E-38 208.37 By MS/MS By MS/MS 7.25 1.64 2 1 1 2 2 273600000 0 118920000 154680000 8841 1751 9206 37758;37759;37760;37761 31624;31625;31626;31627 31624 4 0 41166000 23283000 LQQNQSWTVK ETLGNFRGWYIRTEKLQQNQSWTVKQQCVD IRTEKLQQNQSWTVKQQCVDLLAEGLWEEL K L Q V K Q 0 0 1 0 0 3 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 10 0 1230.6357 Q6ZVX7 Q6ZVX7 146 155 NCCRP1 F-box only protein 50 yes yes 2 0.00026673 120.15 By MS/MS 9.5 0.5 1 1 2 6099200 6099200 0 0 8842 1510 9207 37762;37763 31628;31629 31629 2 6837700 0 0 LQQQAALSPTTAPAVSSVSK AFVKALQQEQEIEQRLQQQAALSPTTAPAV ALSPTTAPAVSSVSKQETIMRHHTLRQAPQ R L Q S K Q 4 0 0 0 0 3 0 0 0 0 2 1 0 0 2 4 2 0 0 2 0 0 20 0 1983.0637 Q8WXI9 Q8WXI9 479 498 GATAD2B Transcriptional repressor p66-beta yes yes 2 3.0812E-13 144.88 By MS/MS 6 0 1 1 11218000 0 0 11218000 8843 1697 9208 37764 31630 31630 1 0 0 1678300 LQQQELR VKEVEKLQEKREKRRLQQQELREKRAQDVD QEKREKRRLQQQELREKRAQDVDATNPNYE R L Q L R E 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 0 913.49813 O00139 O00139 175 181 KIF2A Kinesin-like protein KIF2A yes yes 2 0.044324 74.415 By MS/MS 3 0 1 1 2020100 0 0 2020100 8844 104 9209 37765 31631 31631 0 0 0 391810 LQQQHSEQPPLQPSPVMTR RPQETEEMKTRRTTRLQQQHSEQPPLQPSP HSEQPPLQPSPVMTRRGLRDSHSSEEDEAS R L Q T R R 0 1 0 0 0 5 1 0 1 0 2 0 1 0 4 2 1 0 0 1 0 0 19 0 2200.1059 Q5JTV8 Q5JTV8 130 148 TOR1AIP1 Torsin-1A-interacting protein 1 yes yes 3 1.6409E-06 104.45 By MS/MS By MS/MS 6 1.41 1 2 2 1 12093000 0 6882900 5210600 8845 1439 9210 37766;37767;37768 31632;31633 31633 2 0 2847700 924590 LQQQLTQAQETLK QGHLKRASNESTRQRLQQQLTQAQETLKSL QRLQQQLTQAQETLKSLGALKK________ R L Q L K S 1 0 0 0 0 5 1 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 13 0 1527.8257 Q9Y4P3 Q9Y4P3 428 440 TBL2 Transducin beta-like protein 2 yes yes 2 1.68E-24 197.21 By MS/MS By MS/MS 5 0 2 1 1 51876000 0 27974000 23902000 8846 2288 9211 37769;37770 31634;31635 31634 2 0 7210800 3334000 LQQQQRPEDAEDGAEGGGK ______________________________ QRPEDAEDGAEGGGKRGEAGWEGGYPEIVK R L Q G K R 2 1 0 2 0 4 3 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 19 1 2011.9195 Q08J23 Q08J23 10 28 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 0.00216 62.658 By MS/MS By matching 2.5 0.5 1 1 1 1 5560600 0 3185800 2374800 8847 1187 9212 37771;37772 31636 31636 1 0 1434600 460600 LQQSDIWK KTTEKKLPTKQTIAKLQQSDIWKMENEFYE TKQTIAKLQQSDIWKMENEFYEFALEQFQF K L Q W K M 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 0 1 0 0 0 0 8 0 1016.5291 Q7LGA3 Q7LGA3 304 311 HS2ST1 Heparan sulfate 2-O-sulfotransferase 1 yes yes 2 0.0018807 110.36 By MS/MS By matching 3.5 3.2 1 2 1 3 1 24081000 22956000 1125500 0 8848 1527 9213 37773;37774;37775;37776 31637;31638;31639 31637 3 23710000 506830 0 LQQSHPLSATQIQVK ALEDKVKALCAEADRLQQSHPLSATQIQVK LQQSHPLSATQIQVKREELITNWEQIRTLA R L Q V K R 1 0 0 0 0 4 0 0 1 1 2 1 0 0 1 2 1 0 0 1 0 0 15 0 1676.921 Q13813 Q13813 321 335 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 8.5233E-91 259.7 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 91991000 0 67635000 24356000 8849 1268 9214 37777;37778;37779;37780 31640;31641;31642;31643 31642 4 0 33059000 5247800 LQQTYAALNSK NQRRYRQRRKAELVKLQQTYAALNSKATFY ELVKLQQTYAALNSKATFYGEQVDYYKSYI K L Q S K A 2 0 1 0 0 2 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 11 0 1235.651 P46940 P46940 1506 1516 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.00032837 130.66 By MS/MS 2 0 1 1 19906000 0 19906000 0 8850 835 9215 37781 31644 31644 1 0 8963900 0 LQSDFAALLTGPLQR EYLNAYSGRKYQADRLQSDFAALLTGPLQR LQSDFAALLTGPLQRNPLCNLLSFTYKLDP R L Q Q R N 2 1 0 1 0 2 0 1 0 0 4 0 0 1 1 1 1 0 0 0 0 0 15 0 1628.8886 Q9BU64 Q9BU64 197 211 CENPO Centromere protein O yes yes 2 0.00035372 117.98 By MS/MS 6 0 1 1 4096600 0 0 4096600 8851 1903 9216 37782 31645 31645 1 0 0 612890 LQSGQFGDVGFNPYEPAVDFFSGDVMIHPVTNRPADK RDLRLTDEQVALVRRLQSGQFGDVGFNPYE GDVMIHPVTNRPADKRSFIPSLVEKEKVSR R L Q D K R 2 1 2 4 0 2 1 4 1 1 1 1 1 4 4 2 1 0 1 4 0 0 37 1 4050.9211 Q14137 Q14137 207 243 BOP1 Ribosome biogenesis protein BOP1 yes yes 4 1.1282E-13 65.58 By MS/MS 2 0 1 1 3003600 0 0 3003600 8852 1283 9217 37783 31646 31646 1 0 0 678760 LQSGVNTLQGFK EPGYCPVRLGMTTGRLQSGVNTLQGFKEDK TGRLQSGVNTLQGFKEDKRNKVTPVLYLNY R L Q F K E 0 0 1 0 0 2 0 2 0 0 2 1 0 1 0 1 1 0 0 1 0 0 12 0 1290.6932 Q9NPI1 Q9NPI1 378 389 BRD7 Bromodomain-containing protein 7 yes yes 2 0.021878 83.499 By MS/MS 3 0 1 1 2668800 0 2668800 0 8853 2029 9218 37784 31647 31647 1 0 1137700 0 LQSIGTENTEENRR GILAADESTGSIAKRLQSIGTENTEENRRF RLQSIGTENTEENRRFYRQLLLTADDRVNP R L Q R R F 0 2 2 0 0 1 3 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 14 1 1645.802 P04075 P04075 44 57 ALDOA Fructose-bisphosphate aldolase A yes yes 3 7.1465E-08 165.73 By MS/MS 5 0 1 1 17119000 0 0 17119000 8854 409 9219 37785 31648 31648 1 0 0 2387700 LQSIMSFLDEMEK FPEPPEDGTLLSEAKLQSIMSFLDEMEKSG AKLQSIMSFLDEMEKSGQDQLDSQQEGWVP K L Q E K S 0 0 0 1 0 1 2 0 0 1 2 1 2 1 0 2 0 0 0 0 0 0 13 0 1569.7419 Q9UPN4 Q9UPN4 529 541 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.00032553 139.86 By MS/MS 1.5 0.5 1 1 2 4209800 0 0 4209800 8855 2215 9220 37786;37787 31649 31649 1 0 0 934120 LQSLFEEHLQGQLQTLAAHPIANFPLQR SRLLEQVLLVLEPPRLQSLFEEHLQGQLQT QTLAAHPIANFPLQRLLDAVTTPELLSPVF R L Q Q R L 3 1 1 0 0 5 2 1 2 1 6 0 0 2 2 1 1 0 0 0 0 0 28 0 3198.6938 Q86U38 Q86U38 344 371 NOP9 Nucleolar protein 9 yes yes 4 2.9343E-08 71.678 By MS/MS 3 0 1 1 6910800 0 0 6910800 8856 1543 9221 37788 31650 31650 1 0 0 1340400 LQSLTENLTK DKSRSLNESKIEIERLQSLTENLTKEHLML IEIERLQSLTENLTKEHLMLEEELRNLRLE R L Q T K E 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 2 0 0 0 0 0 10 0 1145.6292 P15924 P15924 1706 1715 DSP Desmoplakin yes yes 2 0.00043236 136.99 By MS/MS By MS/MS By MS/MS 5.62 3.08 2 1 2 1 1 1 4 1 3 112060000 77035000 26701000 8328100 8857 572 9222 37789;37790;37791;37792;37793;37794;37795;37796 31651;31652;31653;31654;31655 31654 5 69949000 13051000 7469000 LQSNPSLEGVSHVIVDEVHER GGALLFCTVGILLRKLQSNPSLEGVSHVIV LEGVSHVIVDEVHERDVNTDFLLILLKGLQ K L Q E R D 0 1 1 1 0 1 3 1 2 1 2 0 0 0 1 3 0 0 0 4 0 0 21 0 2343.1819 Q7L2E3 Q7L2E3 544 564 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 4 3.7354E-09 109.85 By MS/MS 2 0 1 1 7120000 0 0 7120000 8858 1522 9223 37797 31656 31656 1 0 0 1609000 LQSQTENLK ETKVQISQLHQEIQRLQSQTENLKKQNASL HQEIQRLQSQTENLKKQNASLQAAITDAEQ R L Q L K K 0 0 1 0 0 2 1 0 0 0 2 1 0 0 0 1 1 0 0 0 0 0 9 0 1059.556 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 340 348 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.00040727 137.62 By MS/MS 1 0 1 1 2296100 2296100 0 0 + 8859 94 9224 37798 31657;31658 31657 2 2296100 0 0 LQSSQEPEAPPPR SPKARRGKARRRAAKLQSSQEPEAPPPRDV AKLQSSQEPEAPPPRDVALLQGRANDLVKY K L Q P R D 1 1 0 0 0 2 2 0 0 0 1 0 0 0 4 2 0 0 0 0 0 0 13 0 1434.7103 Q9UNF1 Q9UNF1 262 274 MAGED2 Melanoma-associated antigen D2 yes yes 2 0.012127 85.958 By MS/MS 3 0 1 1 903520 0 903520 0 8860 2206 9225 37799 31659 31659 1 0 385170 0 LQSVQALTEIQEFISFISK YSSIDVLLHQSRLTKLQSVQALTEIQEFIS QALTEIQEFISFISKQGNLSSQVPLKRLLN K L Q S K Q 1 0 0 0 0 3 2 0 0 3 2 1 0 2 0 3 1 0 0 1 0 0 19 0 2180.1729 P78527 P78527 3129 3147 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 7.542E-09 121.79 By MS/MS 2 0 2 2 6343100 0 0 6343100 8861 1089 9226 37800;37801 31660;31661 31661 2 0 0 1433400 LQTASDESYKDPTNIQSK FSRDVDEIEAWISEKLQTASDESYKDPTNI ASDESYKDPTNIQSKHQKHQAFEAELHANA K L Q S K H 1 0 1 2 0 2 1 0 0 1 1 2 0 0 1 3 2 0 1 0 0 0 18 1 2023.9698 Q13813 Q13813 1571 1588 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 9.2537E-51 223.06 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 124650000 0 55169000 69482000 8862 1268 9227 37802;37803;37804;37805;37806 31662;31663;31664;31665;31666 31665 5 0 26966000 15028000 LQTMKEELDFQK QLQDEMLRRVDAENRLQTMKEELDFQKNIY ENRLQTMKEELDFQKNIYSEELRETKRRHE R L Q Q K N 0 0 0 1 0 2 2 0 0 0 2 2 1 1 0 0 1 0 0 0 0 0 12 1 1508.7545 P02545 P02545 197 208 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 1.7264E-147 290.51 By MS/MS By MS/MS 3.42 1.04 1 2 7 6 3 7 12 527560000 0 104750000 422800000 8863 387 9228;9229 37807;37808;37809;37810;37811;37812;37813;37814;37815;37816;37817;37818;37819;37820;37821;37822;37823;37824;37825 31667;31668;31669;31670;31671;31672;31673;31674;31675;31676;31677;31678;31679;31680;31681;31682 31677 123 16 0 41409000 77782000 LQTPNTFPK EAAKEAETPQAKKIKLQTPNTFPKRKKGEK QAKKIKLQTPNTFPKRKKGEKRASSPFRRV K L Q P K R 0 0 1 0 0 1 0 0 0 0 1 1 0 1 2 0 2 0 0 0 0 0 9 0 1044.5604 Q14978 Q14978 605 613 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 2 0.009997 88.819 By MS/MS 3 0 1 1 1710400 0 1710400 0 8864 1326 9230 37826 31683 31683 1 0 729140 0 LQTQASATVAIPK KLDAVMKARKDIVARLQTQASATVAIPKEH ARLQTQASATVAIPKEHHRFVIGKNGEKLQ R L Q P K E 3 0 0 0 0 2 0 0 0 1 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1326.7507 Q00341 Q00341 147 159 HDLBP Vigilin yes yes 2 0.051634 68.132 By MS/MS 2 0 1 1 4325500 0 4325500 0 8865 1122 9231 37827 31684 31684 1 0 1947800 0 LQTQVFK DYILGLKIEDFLERRLQTQVFKLGLAKSIH IEDFLERRLQTQVFKLGLAKSIHHARVLIR R L Q F K L 0 0 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 7 0 862.49125 P46781 P46781 110 116 RPS9 40S ribosomal protein S9 yes yes 2 0.037967 85.359 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 153720000 0 64165000 89551000 8866 831 9232 37828;37829;37830 31685;31686 31685 2 0 36566000 15890000 LQTSEAALSSSQAEVASLR ERRGLMSQLEEKERRLQTSEAALSSSQAEV EAALSSSQAEVASLRQETVAQAALLTEREE R L Q L R Q 4 1 0 0 0 2 2 0 0 0 3 0 0 0 0 5 1 0 0 1 0 0 19 0 1946.9909 Q9BW19 Q9BW19 255 273 KIFC1 Kinesin-like protein KIFC1 yes yes 2 6.3863E-10 158.89 By matching By MS/MS By MS/MS 3 0 3 1 1 1 15788000 3646800 2638700 9502300 8867 1919 9233 37831;37832;37833 31687;31688 31688 2 4207600 1124900 1843000 LQTSSVLVSGLR YSRQLYVLGHEAMKRLQTSSVLVSGLRGLG MKRLQTSSVLVSGLRGLGVEIAKNIILGGV R L Q L R G 0 1 0 0 0 1 0 1 0 0 3 0 0 0 0 3 1 0 0 2 0 0 12 0 1258.7245 P22314 P22314 70 81 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.010635 93.325 By matching By MS/MS By MS/MS 2 0 3 1 1 1 16910000 3487100 4402000 9020600 8868 630 9234 37834;37835;37836 31689;31690 31689 2 4201600 1982300 2038500 LQVEELLK RLRETEILFHSSLLRLQVEELLKEVRLSEK FHSSLLRLQVEELLKEVRLSEKKKDRIDAF R L Q L K E 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 0 0 1 0 0 8 0 970.5699 Q9H6R4 Q9H6R4 86 93 NOL6 Nucleolar protein 6 yes yes 2 0.0022767 109.01 By MS/MS 1.5 0.5 1 1 2 14570000 0 0 14570000 8869 1988 9235 37837;37838 31691 31691 1 0 0 3268200 LQVELDNVTGLLSQSDSK EGERVRTELADKVTKLQVELDNVTGLLSQS ELDNVTGLLSQSDSKSSKLTKDFSALESQL K L Q S K S 0 0 1 2 0 2 1 1 0 0 4 1 0 0 0 3 1 0 0 2 0 0 18 0 1945.0004 P35579 P35579 1278 1295 MYH9 Myosin-9 yes yes 2;3 1.0072E-180 301.57 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 245780000 0 211830000 33945000 8870 752 9236 37839;37840;37841;37842;37843;37844 31692;31693;31694;31695;31696;31697;31698 31692 7 0 103300000 7293800 LQVLVGDVLK AELHKRVQGTPVASKLQVLVGDVLKTDLPF PVASKLQVLVGDVLKTDLPFFDTCVANLPY K L Q L K T 0 0 0 1 0 1 0 1 0 0 3 1 0 0 0 0 0 0 0 3 0 0 10 0 1082.6699 Q9UNQ2 Q9UNQ2 107 116 DIMT1 Probable dimethyladenosine transferase yes yes 2 0.067159 68.371 By MS/MS By matching 6.33 0.471 2 1 1 2 15317000 0 4935200 10381000 8871 2210 9237 37845;37846;37847 31699 31699 1 0 1708400 1595700 LQVTNVLSQPLTQATVK PEGSASDTHEQAILRLQVTNVLSQPLTQAT VTNVLSQPLTQATVKLEHAKSVASRATVLQ R L Q V K L 1 0 1 0 0 3 0 0 0 0 3 1 0 0 1 1 3 0 0 3 0 0 17 0 1839.0466 P04844 P04844 290 306 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2;3 5.8907E-06 150.11 By MS/MS 4 0 2 2 15649000 0 15649000 0 8872 420 9238 37848;37849 31700;31701 31701 2 0 5193200 0 LQVVDQPLPVR FHSPNPEIPALLDGRLQVVDQPLPVRGGNV LDGRLQVVDQPLPVRGGNVGINSFGFGGSN R L Q V R G 0 1 0 1 0 2 0 0 0 0 2 0 0 0 2 0 0 0 0 3 0 0 11 0 1262.7347 P49327 P49327 374 384 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.014461 87.308 By MS/MS By matching 1 0 2 1 1 14274000 6000800 0 8273500 8873 853 9239 37850;37851 31702 31702 1 6000800 0 1782700 LQVVLNESNADTYAGRPLPSK KKMENIQKLGNYTLKLQVVLNESNADTYAG ESNADTYAGRPLPSKAIKFSVKEGKPEKFS K L Q S K A 2 1 2 1 0 1 1 1 0 0 3 1 0 0 2 2 1 0 1 2 0 0 21 1 2271.1859 A6NHR9 A6NHR9 792 812 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 6.31E-29 190.71 By MS/MS By MS/MS 1 0 2 1 1 26509000 0 8711400 17797000 8874 15 9240 37852;37853 31703;31704 31703 2 0 4258000 3834700 LQWDLGLGHLPR AWLKVMEKAHINLVRLQWDLGLGHLPRFFG LVRLQWDLGLGHLPRFFGTAVTCLLSPHSQ R L Q P R F 0 1 0 1 0 1 0 2 1 0 4 0 0 0 1 0 0 1 0 0 0 0 12 0 1403.7674 Q5JTH9 Q5JTH9 404 415 RRP12 RRP12-like protein yes yes 3 0.020465 61.577 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 14828000 0 5661400 9166200 8875 1438 9241 37854;37855;37856;37857 31705;31706;31707 31707 3 0 2549400 2000500 LQWFQNHLDPQK LKNEKALRLNLVGEKLQWFQNHLDPQKKRY GEKLQWFQNHLDPQKKRYSKKDACELIERY K L Q Q K K 0 0 1 1 0 3 0 0 1 0 2 1 0 1 1 0 0 1 0 0 0 0 12 0 1552.7787 Q96EY4 Q96EY4 55 66 TMA16 Translation machinery-associated protein 16 yes yes 3 0.04532 47.57 By matching By MS/MS 7 0 2 1 1 30607000 0 5932400 24675000 8876 1779 9242 37858;37859 31708 31708 1 0 3406400 4378400 LQYEGIFIK VKIHEATGMPAGKQKLQYEGIFIKDSNSLA PAGKQKLQYEGIFIKDSNSLAYYNMANGAV K L Q I K D 0 0 0 0 0 1 1 1 0 2 1 1 0 1 0 0 0 0 1 0 0 0 9 0 1109.6121 Q15459 Q15459 757 765 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.037524 75.109 By MS/MS 1.5 0.5 1 1 2 21673000 0 0 21673000 8877 1369 9243 37860;37861 31709 31709 1 0 0 4856200 LQYFMEQFYGIIR VSNMVAKNAEMHKNKLQYFMEQFYGIIRNV NKLQYFMEQFYGIIRNVDSNNKELSIAIRG K L Q I R N 0 1 0 0 0 2 1 1 0 2 1 0 1 2 0 0 0 0 2 0 0 0 13 0 1706.849 P78527 P78527 338 350 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.4059E-05 155.42 By MS/MS 1 0 1 1 4966200 0 0 4966200 8878 1089 9244 37862 31710 31710 1 0 0 1070000 LQYLIDLGR GHSFRRQYKPLSLNRLQYLIDLGRVDPSQP PLSLNRLQYLIDLGRVDPSQPIDLTQLVNG R L Q G R V 0 1 0 1 0 1 0 1 0 1 3 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 Q9P015 Q9P015 101 109 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 2 4.2656E-11 168.23 By MS/MS By MS/MS 6 0 2 1 1 3785100 0 0 3785100 8879 2110 9245 37863;37864 31711;31712 31712 2 0 0 566290 LQYTEHQQLEGWR KLVKSIFRVVFHDRRLQYTEHQQLEGWRWN RRLQYTEHQQLEGWRWNRPGDRILDIDIPM R L Q W R W 0 1 0 0 0 3 2 1 1 0 2 0 0 0 0 0 1 1 1 0 0 0 13 0 1686.8114 Q12800;Q9NZI6 Q12800 129 141 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 3 0.00023207 111.39 By matching By MS/MS By MS/MS 4 0 3 1 1 1 47736000 6526200 8935700 32274000 8880 1200 9246 37865;37866;37867 31713;31714 31713 2 5091600 2965400 5271400 LQYVFGYK YKDIFPDLFKRAAERLQYVFGYKLVELEPK FKRAAERLQYVFGYKLVELEPKSNTYILIN R L Q Y K L 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 0 0 2 1 0 0 8 0 1016.5331 Q96MG7 Q96MG7 134 141 NDNL2 Melanoma-associated antigen G1 yes yes 2 0.063932 74.415 By MS/MS 6 0 1 1 0 0 0 0 8881 1811 9247 37868 31715 31715 1 0 0 0 LRAEEASLQDSLSK KAEAGRVELELSMTKLRAEEASLQDSLSKL KLRAEEASLQDSLSKLSALNESLAQDKLDL K L R S K L 2 1 0 1 0 1 2 0 0 0 3 1 0 0 0 3 0 0 0 0 0 0 14 1 1545.7999 Q5TZA2;Q86T23 Q5TZA2 727 740 CROCC;CROCCP2 Rootletin;Putative ciliary rootlet coiled-coil protein-like 1 protein yes no 2 2.7694E-10 175.21 By MS/MS 1 0 1 1 5551600 0 0 5551600 8882 1458 9248 37869 31716 31716 1 0 0 1196200 LRAEIDNVK NTKHEISEMNRMIQRLRAEIDNVKKQCANL NRMIQRLRAEIDNVKKQCANLQNAIADAEQ R L R V K K 1 1 1 1 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 9 1 1056.5928 CON__P13647;P13647 CON__P13647 396 404 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.0033919 123.21 By MS/MS 9 0 1 1 7396800 7396800 0 0 + 8883 58 9249 37870 31717 31717 1 4151900 0 0 LRAEIENIKK NTKSEIAELNRMIQRLRAEIENIKKQCQTL RMIQRLRAEIENIKKQCQTLQVSVADAEQR R L R K K Q 1 1 1 0 0 0 2 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 10 2 1212.719 CON__P19013;P19013 CON__P19013 439 448 KRT4 Keratin, type II cytoskeletal 4 no no 3 0.016291 72.2 By MS/MS 1 0 1 1 18727000 18727000 0 0 + 8884 61 9250 37871 31718 31718 1 18727000 0 0 LRAELDEVNK ETARERARLQIEIGKLRAELDEVNKSAKKR IEIGKLRAELDEVNKSAKKREGELTVAQGR K L R N K S 1 1 1 1 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 10 1 1185.6354 Q03252 Q03252 124 133 LMNB2 Lamin-B2 yes yes 2 0.071852 89.08 By MS/MS 2 0.816 1 1 1 3 65747000 0 0 65747000 8885 1156 9251 37872;37873;37874 31719 31719 1 0 0 13343000 LRAETEQGEQQR GTAQQRLAAEQELIRLRAETEQGEQQRQLL LIRLRAETEQGEQQRQLLEEELARLQREAA R L R Q R Q 1 2 0 0 0 3 3 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 12 1 1443.7066 Q15149 Q15149 1855 1866 PLEC Plectin yes yes 3 0.052059 49.423 By MS/MS 1 0 1 1 681110 0 681110 0 8886 1348 9252 37875 31720 31720 1 0 332920 0 LRDFLLDIEDR YDPSQMCAEKQLELRLRDFLLDIEDRIYQG LELRLRDFLLDIEDRIYQGTLGAIKVTDRH R L R D R I 0 2 0 3 0 0 1 0 0 1 3 0 0 1 0 0 0 0 0 0 0 0 11 1 1403.7409 Q9NRL2 Q9NRL2 979 989 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.0094134 112.13 By MS/MS 1 0 1 1 2921900 0 0 2921900 8887 2045 9253 37876 31721 31721 1 0 0 629570 LRDLEDSLAR QLSQLQKQLAAKEAKLRDLEDSLARERDTS AKEAKLRDLEDSLARERDTSRRLLAEKERE K L R A R E 1 2 0 2 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 1 1186.6306 P02545 P02545 320 329 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.4206E-149 287.77 By MS/MS By MS/MS 2.5 1.12 2 2 2 2 4 4 207860000 0 28600000 179260000 8888 387 9254 37877;37878;37879;37880;37881;37882;37883;37884 31722;31723;31724;31725;31726;31727;31728 31727 7 0 11399000 34932000 LRDTEEMLSK KAGKGGPTPQEAIQRLRDTEEMLSKKQEFL EAIQRLRDTEEMLSKKQEFLEKKIEQELTA R L R S K K 0 1 0 1 0 0 2 0 0 0 2 1 1 0 0 1 1 0 0 0 0 0 10 1 1220.6071 Q9H444 Q9H444 29 38 CHMP4B Charged multivesicular body protein 4b yes yes 2;3 0.00036172 150.1 By matching By MS/MS By MS/MS 6 0 4 1 1 2 50061000 3832700 6275400 39953000 8889 1981 9255 37885;37886;37887;37888 31729;31730;31731 31731 3 5103300 2172300 5977400 LRECLPLIIFLR LTGVFAPRPSTGPHKLRECLPLIIFLRNRL PHKLRECLPLIIFLRNRLKYALTGDEVKKI K L R L R N 0 2 0 0 1 0 1 0 0 2 4 0 0 1 1 0 0 0 0 0 0 0 12 1 1541.9116 P62701 P62701 38 49 RPS4X 40S ribosomal protein S4, X isoform yes yes 2;3 5.2159E-05 159.94 By matching By MS/MS 6 0 3 1 2 13019000 0 402280 12617000 8890 1029 9256 37889;37890;37891 31732;31733 31733 2 0 139260 1887600 LREDAPLR EARPRGEERLREEARLREDAPLRARPAAAS RLREEARLREDAPLRARPAAASPRAEPWLS R L R L R A 1 2 0 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 8 1 968.54033 Q8NC56 Q8NC56 68 75 LEMD2 LEM domain-containing protein 2 yes yes 2 0.007392 122.52 By matching By MS/MS 3.5 0.5 1 1 1 1 9580400 7447500 0 2132900 8891 1631 9257 37892;37893 31734 31734 1 8592700 0 348370 LREDENAEPVGTTYQK NGLARLSSPVLHRLRLREDENAEPVGTTYQ REDENAEPVGTTYQKTDAAVEMKRINREQF R L R Q K T 1 1 1 1 0 1 3 1 0 0 1 1 0 0 1 0 2 0 1 1 0 0 16 1 1848.8854 Q16643 Q16643 150 165 DBN1 Drebrin yes yes 2;3 5.6833E-09 174.39 By MS/MS By MS/MS 2.33 1.15 2 4 2 1 2 7 123890000 0 46627000 77267000 8892 1395 9258 37894;37895;37896;37897;37898;37899;37900;37901;37902 31735;31736;31737;31738;31739;31740;31741 31736 7 0 20997000 15125000 LREDLER DGKYSQVLANGLDNKLREDLERLKKIRAHR LANGLDNKLREDLERLKKIRAHRGLRHFWG K L R E R L 0 2 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 929.49304 P62269 P62269 107 113 RPS18 40S ribosomal protein S18 yes yes 2 0.041594 127.46 By MS/MS 7 0 1 1 16017000 0 0 16017000 8893 1014 9259 37903 31742 31742 1 0 0 2842100 LREELKPIAFAR HFGYCDEIDLTELVKLREELKPIAFARGIK LVKLREELKPIAFARGIKLSFMPFFLKAAS K L R A R G 2 2 0 0 0 0 2 0 0 1 2 1 0 1 1 0 0 0 0 0 0 0 12 2 1441.8405 P11182 P11182 290 301 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 3 0.02304 67.252 By MS/MS 4 0 1 1 6910500 0 0 6910500 8894 519 9260 37904 31743 31743 1 0 0 1128700 LREFEEGLVSQYK TEAEKSTKTRKETQKLREFEEGLVSQYKFY QKLREFEEGLVSQYKFYLENLEQMVKDWKQ K L R Y K F 0 1 0 0 0 1 3 1 0 0 2 1 0 1 0 1 0 0 1 1 0 0 13 1 1596.8148 Q8WTT2 Q8WTT2 294 306 NOC3L Nucleolar complex protein 3 homolog yes yes 2;3 7.12E-05 162.93 By MS/MS 2 0.707 1 2 1 4 30555000 0 0 30555000 8895 1670 9261 37905;37906;37907;37908 31744;31745 31745 2 0 0 6744400 LRENVFQEHQTLK TVQGSGHQEHINIHKLRENVFQEHQTLKEK HKLRENVFQEHQTLKEKELETGPKASHGYG K L R L K E 0 1 1 0 0 2 2 0 1 0 2 1 0 1 0 0 1 0 0 1 0 0 13 1 1640.8635 Q14247 Q14247 58 70 CTTN Src substrate cortactin yes yes 3;4 0.02626 57.475 By MS/MS 3 0 2 2 12676000 0 12676000 0 8896 1295 9262 37909;37910 31746;31747 31746 2 0 5403900 0 LREQLGPVTQEFWDNLEK KLLDNWDSVTSTFSKLREQLGPVTQEFWDN QLGPVTQEFWDNLEKETEGLRQEMSKDLEE K L R E K E 0 1 1 1 0 2 3 1 0 0 3 1 0 1 1 0 1 1 0 1 0 0 18 1 2201.1117 P02647 P02647 84 101 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 3 4.0363E-09 122.57 By MS/MS 9 0 1 1 3767000 3767000 0 0 8897 389 9263 37911 31748 31748 1 2114400 0 0 LREQLQLLEEQHR QRRQQEELLAEENQRLREQLQLLEEQHRAA QRLREQLQLLEEQHRAALAHSEEVTASQVA R L R H R A 0 2 0 0 0 3 3 0 1 0 4 0 0 0 0 0 0 0 0 0 0 0 13 1 1690.9115 Q15149 Q15149 2731 2743 PLEC Plectin yes yes 3;4 0.00022796 114.79 By MS/MS By MS/MS 1 0 4 2 2 60580000 0 13283000 47297000 8898 1348 9264 37912;37913;37914;37915 31749;31750;31751;31752 31751 4 0 6492400 10191000 LREQVEER IDCFSEVPTSVFGEKLREQVEERLSFYETG TSVFGEKLREQVEERLSFYETGEIPRKNLD K L R E R L 0 2 0 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 1 1057.5516 O00567 O00567 397 404 NOP56 Nucleolar protein 56 yes yes 2 1.4204E-19 193.41 By MS/MS 3 0 1 1 3295800 0 0 3295800 8899 130 9265 37916 31753 31753 1 0 0 639230 LREYEAALNSK NYAKKESDLNGAQIKLREYEAALNSKDAAL AQIKLREYEAALNSKDAALATALGDKKSLE K L R S K D 2 1 1 0 0 0 2 0 0 0 2 1 0 0 0 1 0 0 1 0 0 0 11 1 1292.6725 P20700 P20700 135 145 LMNB1 Lamin-B1 yes yes 2;3 1.2419E-25 199.33 By matching By MS/MS By MS/MS 3.25 1.92 5 3 4 3 2 1 2 2 11 7 614620000 12987000 203900000 397730000 8900 619 9266 37917;37918;37919;37920;37921;37922;37923;37924;37925;37926;37927;37928;37929;37930;37931;37932;37933;37934;37935;37936 31754;31755;31756;31757;31758;31759;31760;31761;31762;31763;31764;31765;31766;31767 31764 14 12987000 86618000 71859000 LRGEVGLLFTNR PSDEYKDNLHQVSKRLRGEVGLLFTNRTKE SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM R L R N R T 0 2 1 0 0 0 1 2 0 0 3 0 0 1 0 0 1 0 0 1 0 0 12 1 1373.7779 Q9UKD2 Q9UKD2 96 107 MRTO4 mRNA turnover protein 4 homolog yes yes 2;3 4.9416E-05 160.15 By matching By MS/MS By MS/MS 6.2 0.4 4 1 1 1 3 28517000 2795000 2992800 22730000 8901 2177 9267 37937;37938;37939;37940;37941 31768;31769;31770;31771 31769 4 3721500 1036000 3588000 LRHEILLSQSVR MMLVTSGAVAFGKQRLRHEILLSQSVRQAL KQRLRHEILLSQSVRQALHSGQNQLKEMAI R L R V R Q 0 2 0 0 0 1 1 0 1 1 3 0 0 0 0 2 0 0 0 1 0 0 12 1 1449.8416 P54886 P54886 127 138 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 3 0.061652 45.79 By MS/MS 3 0 1 1 1789000 0 1789000 0 8902 932 9268 37942 31772 31772 1 0 762640 0 LRIEEEIR IQAKARQAEAAERSRLRIEEEIRVVRLQLE EAAERSRLRIEEEIRVVRLQLEATERQRGG R L R I R V 0 2 0 0 0 0 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 8 1 1056.5928 Q15149 Q15149 1585 1592 PLEC Plectin yes yes 2 0.017683 108.98 By MS/MS 1 0 1 1 6350800 0 6350800 0 8903 1348 9269 37943 31773 31773 1 0 3104200 0 LRKEELSEEGYLAK LQTEIKNQLCDLETKLRKEELSEEGYLAKV KLRKEELSEEGYLAKVKSLLNKDLSLENGA K L R A K V 1 1 0 0 0 0 4 1 0 0 3 2 0 0 0 1 0 0 1 0 0 0 14 2 1663.8781 P26358 P26358 68 81 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.019201 62.077 By MS/MS 1 0 1 1 9014300 0 0 9014300 8904 667 9270 37944 31774 31774 1 0 0 1942300 LRLDSIVIQQGR DNTVEERIVERAEMKLRLDSIVIQQGRLVD EMKLRLDSIVIQQGRLVDQNLNKIGKDEML K L R G R L 0 2 0 1 0 2 0 1 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1396.815 O60264;P28370 O60264 625 636 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2;3 0.00014978 126.03 By MS/MS By MS/MS 2 0.756 2 3 2 1 6 123400000 0 18673000 104720000 8905 223;693 9271 37945;37946;37947;37948;37949;37950;37951 31775;31776;31777;31778 31777 4 0 8408500 23219000 LRLESEGSPETLTNLR AEMELRAKEEERLNKLRLESEGSPETLTNL RLESEGSPETLTNLRKGYLFMYNLVQFLGF K L R L R K 0 2 1 0 0 0 3 1 0 0 4 0 0 0 1 2 2 0 0 0 0 0 16 1 1813.9534 Q9P035 Q9P035 131 146 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 3 0.0058885 62.469 By MS/MS 1 0 1 1 4394600 0 0 4394600 8906 2112 9272 37952 31779 31779 1 0 0 946880 LRNEKEQELDTLK PLWYLTKEKKDELCRLRNEKEQELDTLKRK CRLRNEKEQELDTLKRKSPSDLWKEDLATF R L R L K R 0 1 1 1 0 1 3 0 0 0 3 2 0 0 0 0 1 0 0 0 0 0 13 2 1614.8577 P11388 P11388 1147 1159 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.2501E-15 192.68 By MS/MS By MS/MS 1 0 2 1 1 11884000 0 4833700 7050300 8907 524 9273 37953;37954 31780;31781 31781 1 0 2362600 1519100 LRNEYGPVLHMPTSK VPLDEESHKRKMAIKLRNEYGPVLHMPTSK LRNEYGPVLHMPTSKENLKEKGPQNATDSY K L R S K E 0 1 1 0 0 0 1 1 1 0 2 1 1 0 2 1 1 0 1 1 0 0 15 1 1740.8981 O43660 O43660 48 62 PLRG1 Pleiotropic regulator 1 yes yes 3;4 0.00051254 89.506 By MS/MS By MS/MS 4 0 3 2 1 24162000 0 16870000 7291700 8908 205 9274 37955;37956;37957 31782;31783;31784 31784 3 0 5598700 1191000 LRPEAQPHPSAGPKPAESK RHEEQPAPGYDTHGRLRPEAQPHPSAGPKP AQPHPSAGPKPAESKQYFEQYSRSYEQVPP R L R S K Q 3 1 0 0 0 1 2 1 1 0 1 2 0 0 5 2 0 0 0 0 0 0 19 2 1996.049 Q07157 Q07157 1171 1189 TJP1 Tight junction protein ZO-1 yes yes 4;5 0.0016332 65.47 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 8684400 0 1062400 7622000 8909 1177 9275 37958;37959;37960;37961 31785;31786;31787 31787 3 0 519300 1645000 LRPLYDIPYMFEAR PPRLEGENTQDKNKKLRPLYDIPYMFEARE KLRPLYDIPYMFEAREFLRKKLIGKKVNVT K L R A R E 1 2 0 1 0 0 1 0 0 1 2 0 1 1 2 0 0 0 2 0 0 0 14 1 1782.9127 Q7KZF4 Q7KZF4 390 403 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 3.6054E-06 164.53 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 66273000 0 13881000 52393000 8910 1518 9276 37962;37963;37964;37965;37966 31788;31789;31790;31791 31791 4 0 6250600 11757000 LRPVAAEVYGTER LDGGFIYEAGLAPYKLRPVAAEVYGTERQP YKLRPVAAEVYGTERQPRTHYYAVAVVKKG K L R E R Q 2 2 0 0 0 0 2 1 0 0 1 0 0 0 1 0 1 0 1 2 0 0 13 1 1459.7783 P02788 P02788 93 105 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2;3 1.1229E-23 198.49 By MS/MS 5.26 2.75 2 2 2 2 2 2 2 2 2 1 19 692160000 692160000 0 0 8911 400 9277 37967;37968;37969;37970;37971;37972;37973;37974;37975;37976;37977;37978;37979;37980;37981;37982;37983;37984;37985 31792;31793;31794;31795;31796;31797;31798;31799;31800;31801;31802;31803;31804;31805;31806;31807;31808;31809 31807 18 656470000 0 0 LRPVNPNPLATK AACDATYNEIVTLERLRPVNPNPLATKGSF LERLRPVNPNPLATKGSFFKVTMAVPEDLR R L R T K G 1 1 2 0 0 0 0 0 0 0 2 1 0 0 3 0 1 0 0 1 0 0 12 1 1318.7721 P51116 P51116 122 133 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2;3 0.040376 96.342 By MS/MS By MS/MS 3 0.632 1 3 1 2 3 30136000 0 7949000 22187000 8912 888 9278 37986;37987;37988;37989;37990 31810;31811;31812 31812 3 0 3470900 4266600 LRPVTLTEMNYSK CALYVPGVAFGDIDKLRPVTLTEMNYSKYG DKLRPVTLTEMNYSKYGAKECSFCEDPRFA K L R S K Y 0 1 1 0 0 0 1 0 0 0 2 1 1 0 1 1 2 0 1 1 0 0 13 1 1550.8127 O94880 O94880 423 435 PHF14 PHD finger protein 14 yes yes 2 0.00022923 160.56 By MS/MS 1.5 0.5 1 1 2 22220000 0 0 22220000 8913 301 9279 37991;37992 31813 31813 1 0 0 4883300 LRQENMELAER DIQLQMEQHNERNSKLRQENMELAERLKKL RNSKLRQENMELAERLKKLIEQYELREEHI K L R E R L 1 2 1 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 11 1 1387.6878 P40222 P40222 298 308 TXLNA Alpha-taxilin yes yes 2 0.0025293 121.68 By MS/MS 3 0 1 1 4790700 0 0 4790700 8914 782 9280 37993 31814 31814 1 0 0 929160 LRQIFNGTFVK NGVSPKVRKVLQLLRLRQIFNGTFVKLNKA QLLRLRQIFNGTFVKLNKASINMLRIVEPY R L R V K L 0 1 1 0 0 1 0 1 0 1 1 1 0 2 0 0 1 0 0 1 0 0 11 1 1321.7507 P18124 P18124 114 124 RPL7 60S ribosomal protein L7 yes yes 3 0.0013454 99.283 By MS/MS 6 0 1 1 13089000 0 13089000 0 8915 594 9281 37994 31815 31815 1 0 4530900 0 LRSEIDNVK NSKIEISELNRVIQRLRSEIDNVKKQISNL NRVIQRLRSEIDNVKKQISNLQQSISDAEQ R L R V K K 0 1 1 1 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 1 0 0 9 1 1072.5877 P04264;CON__P04264 P04264 408 416 KRT1 Keratin, type II cytoskeletal 1 no no 2 3.0617E-11 174.02 By MS/MS By MS/MS By MS/MS 5.77 3.03 3 1 2 2 2 3 1 2 3 3 10 6 6 874350000 716570000 27191000 130580000 + 8916 413 9282 37995;37996;37997;37998;37999;38000;38001;38002;38003;38004;38005;38006;38007;38008;38009;38010;38011;38012;38013;38014;38015;38016 31816;31817;31818;31819;31820;31821;31822;31823;31824;31825;31826;31827;31828;31829;31830;31831;31832;31833 31825 18 741240000 17367000 59306000 LRSEIDNVKK NSKIEISELNRVIQRLRSEIDNVKKQISNL RVIQRLRSEIDNVKKQISNLQQSISDAEQR R L R K K Q 0 1 1 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 0 1 0 0 10 2 1200.6826 P04264;CON__P04264 P04264 408 417 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 2.3764E-11 166.97 By MS/MS By MS/MS By MS/MS 4.74 2.67 5 2 2 4 3 3 4 1 2 1 8 6 13 550580000 29455000 131730000 389390000 + 8917 413 9283 38017;38018;38019;38020;38021;38022;38023;38024;38025;38026;38027;38028;38029;38030;38031;38032;38033;38034;38035;38036;38037;38038;38039;38040;38041;38042;38043 31834;31835;31836;31837;31838;31839;31840;31841;31842;31843;31844;31845;31846;31847;31848;31849;31850;31851;31852;31853;31854;31855;31856;31857;31858;31859;31860;31861;31862;31863;31864;31865;31866;31867;31868;31869 31860 36 30843000 60781000 176470000 LRTEGDGVYTLNDKK YVEHSVRYQCKNYYKLRTEGDGVYTLNDKK LRTEGDGVYTLNDKKQWINKAVGDKLPECE K L R K K Q 0 1 1 2 0 0 1 2 0 0 2 2 0 0 0 0 2 0 1 1 0 0 15 2 1707.8792 P00738;P00739 P00738 58 72 HP;HPR Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain;Haptoglobin-related protein yes no 3 0.045088 48.216 By MS/MS 9 0 1 1 8174200 8174200 0 0 8918 364 9284 38044 31870 31870 1 4588200 0 0 LRTEGDGVYTLNNEK YVEHSVRYQCKNYYKLRTEGDGVYTLNNEK LRTEGDGVYTLNNEKQWINKAVGDKLPECE K L R E K Q 0 1 2 1 0 0 2 2 0 0 2 1 0 0 0 0 2 0 1 1 0 0 15 1 1707.8428 P00738 P00738 117 131 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes yes 2;3 1.5996E-10 176.25 By MS/MS 9 0 2 2 8289200 8289200 0 0 8919 364 9285 38045;38046 31871;31872 31871 2 4652800 0 0 LRVDPVNFK LPGALSELSDLHAHKLRVDPVNFKLLSHSL DLHAHKLRVDPVNFKLLSHSLLVTLASHLP K L R F K L 0 1 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 9 1 1086.6186 P69905;CON__P01966 CON__P01966 92 100 HBA1 Hemoglobin subunit alpha no no 2 0.0030135 137.9 By MS/MS By MS/MS By MS/MS 6.82 2.85 1 1 1 1 1 1 2 3 2 4 5 724070000 136370000 45971000 541720000 + 8920 34;1082 9286 38047;38048;38049;38050;38051;38052;38053;38054;38055;38056;38057 31873;31874;31875;31876 31876 4 150990000 212820000 661090000 LRVEFPR DAVYGRDGYDYDGYRLRVEFPRSGRGTGRG GYDYDGYRLRVEFPRSGRGTGRGGGGGGGG R L R P R S 0 2 0 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 7 1 915.52904 Q07955;Q13242 Q07955 84 90 SRSF1;SRSF9 Serine/arginine-rich splicing factor 1;Serine/arginine-rich splicing factor 9 no no 2 0.019631 142.64 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 224110000 0 90140000 133970000 8921 1179;1232 9287 38058;38059;38060;38061 31877;31878;31879 31879 3 0 37345000 21535000 LRVELAEK AQVQELHAKVSEGDRLRVELAEKASKLQNE KVSEGDRLRVELAEKASKLQNELDNVSTLL R L R E K A 1 1 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 1 956.56548 P35580 P35580 1274 1281 MYH10 Myosin-10 yes yes 2 0.0096168 118.5 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 34753000 0 16037000 18716000 8922 753 9288 38062;38063;38064 31880;31881 31880 2 0 7783800 4032700 LSAFGQIYK QQKEDITHSAQHALRLSAFGQIYKVLEMDP AQHALRLSAFGQIYKVLEMDPLPSSKPFQK R L S Y K V 1 0 0 0 0 1 0 1 0 1 1 1 0 1 0 1 0 0 1 0 0 0 9 0 1025.5546 Q96SI9 Q96SI9 316 324 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.046066 70.919 By MS/MS 3 0 1 1 0 0 0 0 8923 1834 9289 38065 31882 31882 1 0 0 0 LSAFPEPPEDGTLLSEAK DASSLTADNLEKFGKLSAFPEPPEDGTLLS FPEPPEDGTLLSEAKLQSIMSFLDEMEKSG K L S A K L 2 0 0 1 0 0 3 1 0 0 3 1 0 1 3 2 1 0 0 0 0 0 18 0 1899.9466 Q9UPN4 Q9UPN4 511 528 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.00042305 95.98 By MS/MS 2 0 1 1 10342000 0 0 10342000 8924 2215 9290 38066 31883 31883 1 0 0 2337200 LSAIFLR VYEAVKNYTDKRGRRLSAIFLRLPSRSELP YTDKRGRRLSAIFLRLPSRSELPDYYLTIK R L S L R L 1 1 0 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 7 0 818.50142 Q86U86 Q86U86 680 686 PBRM1 Protein polybromo-1 yes yes 2 8.161E-12 177.54 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 15035000 926360 1997300 12111000 8925 1545 9291 38067;38068;38069;38070 31884;31885;31886 31885 3 926360 976250 2642900 LSAITMALQYGSESEEDAALAAAR TSKYYRNKRAVQGGRLSAITMALQYGSESE YGSESEEDAALAAARYEEGESEAESITSFM R L S A R Y 7 1 0 1 0 1 3 1 0 1 3 0 1 0 0 3 1 0 1 0 0 0 24 0 2467.1901 Q86U86 Q86U86 342 365 PBRM1 Protein polybromo-1 yes yes 3 2.8652E-10 92.01 By MS/MS 1.5 0.5 1 1 2 5340500 0 0 5340500 8926 1545 9292 38071;38072 31887 31887 1 0 0 1153400 LSAKPAPPKPEPK DKAKVKDEPQRRSARLSAKPAPPKPEPKPK ARLSAKPAPPKPEPKPKKAPAKKGEKVPKG R L S P K P 2 0 0 0 0 0 1 0 0 0 1 3 0 0 5 1 0 0 0 0 0 0 13 2 1358.7922 P05204;Q15651 P05204 28 40 HMGN2;HMGN3 Non-histone chromosomal protein HMG-17;High mobility group nucleosome-binding domain-containing protein 3 yes no 3 0.0020314 96.135 By MS/MS By matching 7.5 1.5 1 2 2 2 2 1 5 5 45649000 0 30398000 15250000 8927 429 9293 38073;38074;38075;38076;38077;38078;38079;38080;38081;38082 31888;31889;31890;31891 31889 4 0 18365000 6314300 LSALLSHDK DNTNRDSPIFDYSPRLSALLSHDKLMHSQG FDYSPRLSALLSHDKLMHSQGSFNDTHTPE R L S D K L 1 0 0 1 0 0 0 0 1 0 3 1 0 0 0 2 0 0 0 0 0 0 9 0 982.54475 Q03001 Q03001 2224 2232 DST Dystonin yes yes 2 0.037165 75.213 By matching By MS/MS 4 2 1 1 1 1 1 1 1 2 5 123750000 0 1874100 121880000 8928 1152 9294 38083;38084;38085;38086;38087;38088;38089 31892;31893 31892 2 0 868020 18695000 LSASSLTMESFAFLWAGGR DTYNCDLHFKISRDRLSASSLTMESFAFLW SLTMESFAFLWAGGRASYGVSKGKVCFEMK R L S G R A 3 1 0 0 0 0 1 2 0 0 3 0 1 2 0 4 1 1 0 0 0 0 19 0 2029.9931 Q00839 Q00839 306 324 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 1.0838E-115 269.81 By MS/MS 2.2 0.872 2 5 2 1 10 111510000 0 0 111510000 8929 1127 9295 38090;38091;38092;38093;38094;38095;38096;38097;38098;38099 31894;31895;31896;31897;31898;31899;31900;31901;31902;31903;31904;31905;31906 31895 13 0 0 24738000 LSAYVSYGGLLMR YRIEGDETSTEAATRLSAYVSYGGLLMRLQ TRLSAYVSYGGLLMRLQGDANNLHGFEVDS R L S M R L 1 1 0 0 0 0 0 2 0 0 3 0 1 0 0 2 0 0 2 1 0 0 13 0 1428.7435 P52434 P52434 112 124 POLR2H DNA-directed RNA polymerases I, II, and III subunit RPABC3 yes yes 2 2.2335E-17 192.26 By matching By MS/MS 8 0 2 1 1 13297000 0 6787400 6509400 8930 907 9296 38100;38101 31907 31907 1 0 3088000 997960 LSDDFDSPVK NDQQAKIPLKKREIKLSDDFDSPVKGPLCK KREIKLSDDFDSPVKGPLCKSVTPTKEFLK K L S V K G 0 0 0 3 0 0 0 0 0 0 1 1 0 1 1 2 0 0 0 1 0 0 10 0 1121.5241 Q96T23 Q96T23 391 400 RSF1 Remodeling and spacing factor 1 yes yes 2 0.018345 83.948 By MS/MS 1 0 1 1 10061000 0 0 10061000 8931 1837 9297 38102 31908 31908 1 0 0 2167700 LSDDNTIGKEEIQQR AHEPAIQGVLDTGKKLSDDNTIGKEEIQQR LSDDNTIGKEEIQQRLAQFVEHWKELKQLA K L S Q R L 0 1 1 2 0 2 2 1 0 2 1 1 0 0 0 1 1 0 0 0 0 0 15 1 1744.8592 Q13813 Q13813 1830 1844 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 2.5308E-196 304.57 By MS/MS By MS/MS 1.43 0.495 4 3 3 4 106700000 0 44375000 62323000 8932 1268 9298 38103;38104;38105;38106;38107;38108;38109 31909;31910;31911;31912;31913;31914 31913 6 0 21483000 13490000 LSDFNDITNMLLLK DKHFGKGGSKLLRMKLSDFNDITNMLLLKM KLSDFNDITNMLLLKMNKDSKPPGNLKECS K L S L K M 0 0 2 2 0 0 0 0 0 1 4 1 1 1 0 1 1 0 0 0 0 0 14 0 1635.8542 P78527 P78527 3656 3669 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0011779 108.7 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 8009400 0 1651100 6358200 8933 1089 9299 38110;38111;38112 31915;31916 31915 2 0 807060 1376800 LSDLDSETR DPEINTKKINPENSKLSDLDSETRSMVEKM NPENSKLSDLDSETRSMVEKMMYDQRQKSM K L S T R S 0 1 0 2 0 0 1 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 9 0 1034.488 Q9Y266 Q9Y266 276 284 NUDC Nuclear migration protein nudC yes yes 2 8.0488E-07 118.74 By MS/MS 5 0 1 1 0 0 0 0 8934 2235 9300 38113 31917 31917 1 0 0 0 LSDLLAPISEQIK LLVTASQCQQPAENKLSDLLAPISEQIKEV NKLSDLLAPISEQIKEVITFREKNRGSKLF K L S I K E 1 0 0 1 0 1 1 0 0 2 3 1 0 0 1 2 0 0 0 0 0 0 13 0 1425.8079 Q01518 Q01518 101 113 CAP1 Adenylyl cyclase-associated protein 1 yes yes 2 0.0029877 106 By MS/MS 4 0 1 1 5935600 0 5935600 0 8935 1134 9301 38114 31918 31918 1 0 1969800 0 LSDLQTQLSHEIQSDVLTIN PETIVLSALSGLKKKLSDLQTQLSHEIQSD TQLSHEIQSDVLTIN_______________ K L S I N - 0 0 1 2 0 3 1 0 1 2 4 0 0 0 0 3 2 0 0 1 0 0 20 0 2253.1489 P19387 P19387 256 275 POLR2C DNA-directed RNA polymerase II subunit RPB3 yes yes 2 2.7094E-05 89.231 By MS/MS By MS/MS 6 0 2 1 1 6460700 0 1457300 5003500 8936 606 9302 38115;38116 31919;31920 31920 2 0 504450 748570 LSDLVNTAILIALNKR EKLSAAIVLKNHHSRLSDLVNTAILIALNK SDLVNTAILIALNKREYEIPSNLTPADVFF R L S K R E 2 1 2 1 0 0 0 0 0 2 4 1 0 0 0 1 1 0 0 1 0 0 16 1 1753.0462 Q8WUM0 Q8WUM0 660 675 NUP133 Nuclear pore complex protein Nup133 yes yes 3 5.4041E-10 173.68 By MS/MS 1.5 0.5 1 1 2 8362700 0 0 8362700 8937 1675 9303 38117;38118 31921 31921 1 0 0 1878400 LSDPELGVEEEPFHTIMK KGNAIYNLLPDIISRLSDPELGVEEEPFHT PELGVEEEPFHTIMKQLLSYITKDKQTESL R L S M K Q 0 0 0 1 0 0 4 1 1 1 2 1 1 1 2 1 1 0 0 1 0 0 18 0 2069.998 Q15021 Q15021 1174 1191 NCAPD2 Condensin complex subunit 1 yes yes 2 0.035613 54.199 By MS/MS 2 0 1 1 4439800 0 0 4439800 8938 1332 9304 38119 31922 31922 1 0 0 1003300 LSDYLFTLAR QMGETDANVAKFLNRLSDYLFTLARYAAMK KFLNRLSDYLFTLARYAAMKEGNQEKIYMK R L S A R Y 1 1 0 1 0 0 0 0 0 0 3 0 0 1 0 1 1 0 1 0 0 0 10 0 1197.6394 Q96EY8 Q96EY8 216 225 MMAB Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial yes yes 2 0.00098386 111.06 By matching By MS/MS 7 0 2 1 1 5333000 244360 0 5088700 8939 1781 9305 38120;38121 31923 31923 1 526640 0 902950 LSEAQLR EYLEKALEYLRQIFRLSEAQLRQFTLALGT EYLRQIFRLSEAQLRQFTLALGTTQDENGK R L S L R Q 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 815.45012 Q9NXE4 Q9NXE4 671 677 SMPD4 Sphingomyelin phosphodiesterase 4 yes yes 2 0.043506 79.939 By MS/MS 10 0 1 1 1719800 1719800 0 0 8940 2088 9306 38122 31924 31924 1 3133100 0 0 LSEDYGVLK LGPLNIPLLADVTRRLSEDYGVLKTDEGIA ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG R L S L K T 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 9 0 1022.5284 P32119 P32119 111 119 PRDX2 Peroxiredoxin-2 yes yes 2 0.050444 71.379 By matching By MS/MS 7.33 0.471 2 1 1 2 22758000 3691300 0 19066000 8941 727 9307 38123;38124;38125 31925 31925 1 7955500 0 3278300 LSEGSQPAEEEEDQETPSR GERRSSRVRQARAAKLSEGSQPAEEEEDQE SQPAEEEEDQETPSRNLRVRADRNLKTEEE K L S S R N 1 1 0 1 0 2 6 1 0 0 1 0 0 0 2 3 1 0 0 0 0 0 19 0 2116.9033 Q9UKV3 Q9UKV3 239 257 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 1.1824E-40 212.17 By MS/MS 1 0 1 1 7188100 0 0 7188100 8942 2184 9308 38126 31926 31926 1 0 0 1548800 LSEIDVSSEGVK AGELQEDSGLCVLARLSEIDVSSEGVKGAK LARLSEIDVSSEGVKGAKSFFEAKVQAINV R L S V K G 0 0 0 1 0 0 2 1 0 1 1 1 0 0 0 3 0 0 0 2 0 0 12 0 1261.6402 Q96C19 Q96C19 177 188 EFHD2 EF-hand domain-containing protein D2 yes yes 2 9.8515E-09 173.32 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 60016000 0 16031000 43986000 8943 1757 9309 38127;38128;38129 31927;31928;31929 31927 3 0 5549300 6784400 LSEIHHLHPEYVR RPQEDFCFLSSKKYKLSEIHHLHPEYVRVS YKLSEIHHLHPEYVRVSEHFKASMKNFKIE K L S V R V 0 1 0 0 0 0 2 0 3 1 2 0 0 0 1 1 0 0 1 1 0 0 13 0 1628.8423 Q7Z2W4 Q7Z2W4 730 742 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes yes 4 0.071105 31.827 By MS/MS 2 0 1 1 5281600 0 0 5281600 8944 1528 9310 38130 31930 31930 1 0 0 1193500 LSEIPLTLHSVSELVR LQDEIAEDYGELGMKLSEIPLTLHSVSELV SEIPLTLHSVSELVRLCLRRSDVQEESEGS K L S V R L 0 1 0 0 0 0 2 0 1 1 4 0 0 0 1 3 1 0 0 2 0 0 16 0 1792.0094 Q9UIG0 Q9UIG0 678 693 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 6.1862E-06 155.02 By MS/MS By MS/MS 2.12 1.27 3 3 1 1 2 6 79612000 0 8121100 71491000 8945 2164 9311 38131;38132;38133;38134;38135;38136;38137;38138 31931;31932;31933;31934;31935;31936;31937 31933 7 0 3737700 15468000 LSELEAALQR AEQRGELAIKDANAKLSELEAALQRAKQDM DANAKLSELEAALQRAKQDMARQLREYQEL K L S Q R A 2 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 10 0 1128.6139 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__REFSEQ:XP_092267 CON__P05787 353 362 KRT8 Keratin, type II cytoskeletal 8 yes no 2 6.4761E-91 221.7 By MS/MS By MS/MS 5.36 2.79 1 2 2 2 2 2 1 2 7 7 526160000 0 241040000 285130000 + 8946 49 9312 38139;38140;38141;38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152 31938;31939;31940;31941;31942;31943;31944;31945;31946;31947;31948;31949;31950;31951 31948 12 0 91351000 58553000 LSELLPEEVEAEVK CLQKVGDRKNYASAKLSELLPEEVEAEVKA KLSELLPEEVEAEVKAAAEISMGTEVSEED K L S V K A 1 0 0 0 0 0 5 0 0 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1583.8294 Q9Y2X3 Q9Y2X3 222 235 NOP58 Nucleolar protein 58 yes yes 2 0.00072648 114.86 By MS/MS By MS/MS By MS/MS 3 1.15 1 1 1 3 2 1 3 87537000 6420700 3318900 77797000 8947 2254 9313 38153;38154;38155;38156;38157;38158 31952;31953;31954;31955;31956 31955 4 5185500 1101400 13620000 LSELSNSQQSVQTLSLWLIHHR ______________________________ QQSVQTLSLWLIHHRKHAGPIVSVWHRELR K L S H R K 0 1 1 0 0 3 1 0 2 1 5 0 0 0 0 5 1 1 0 1 0 0 22 0 2575.3507 Q9NQG5 Q9NQG5 13 34 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B no no 4 4.9042E-11 100.67 By matching By MS/MS 6 0 2 1 1 12715000 0 1917800 10797000 8948 2033 9314 38159;38160 31957 31957 1 0 663870 1615300 LSENAFDLEAMSMLNR DISTAMSERALAQKRLSENAFDLEAMSMLN SENAFDLEAMSMLNRAQERIDAWAQLNSIP R L S N R A 2 1 2 1 0 0 2 0 0 0 3 0 2 1 0 2 0 0 0 0 0 0 16 0 1839.8495 P18583 P18583 2237 2252 SON Protein SON yes yes 2 0.009335 73.624 By matching By MS/MS 5.5 0.5 1 1 1 1 3513900 0 659660 2854200 8949 596 9315 38161;38162 31958 31958 1 0 170040 427030 LSENAGIQSLLLSK NLVDSLGYNALHYSKLSENAGIQSLLLSKI KLSENAGIQSLLLSKISQDADLKTPTKPKQ K L S S K I 1 0 1 0 0 1 1 1 0 1 4 1 0 0 0 3 0 0 0 0 0 0 14 0 1471.8246 Q9P0K7 Q9P0K7 227 240 RAI14 Ankycorbin yes yes 2 0.0035121 94.122 By MS/MS 2 0 1 1 5198300 0 5198300 0 8950 2115 9316 38163 31959 31959 1 0 2340900 0 LSENVIDR EADENENITVVKGIRLSENVIDRMKESSPS TVVKGIRLSENVIDRMKESSPSGSKSQRYS R L S D R M 0 1 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 8 0 944.49271 Q9NX63 Q9NX63 28 35 CHCHD3 MICOS complex subunit MIC19 yes yes 2 0.00024983 135.84 By matching By MS/MS 6.33 0.471 2 1 1 2 37049000 0 6074200 30974000 8951 2087 9317 38164;38165;38166 31960 31960 1 0 2102700 5098800 LSESQLSFR YGSDRRLAELSDYRRLSESQLSFRRSPTKS LSDYRRLSESQLSFRRSPTKSSLDYRRLPD R L S F R R 0 1 0 0 0 1 1 0 0 0 2 0 0 1 0 3 0 0 0 0 0 0 9 0 1065.5455 Q96PK6 Q96PK6 617 625 RBM14 RNA-binding protein 14 yes yes 2 7.1059E-11 163.99 By MS/MS By MS/MS By MS/MS 6.62 2.96 3 1 1 1 2 1 5 2 93806000 11154000 17329000 65323000 8952 1818 9318 38167;38168;38169;38170;38171;38172;38173;38174 31961;31962;31963;31964 31964 4 12869000 24433000 19981000 LSETWLR CYTKLRERGGVINLRLSETWLRNYQVLPDR RGGVINLRLSETWLRNYQVLPDRSHPKLLM R L S L R N 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 7 0 903.48142 Q9UJA5 Q9UJA5 425 431 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 0.024814 97.071 By MS/MS By matching 4.5 0.5 1 1 1 1 6438200 0 5594300 843910 8953 2168 9319 38175;38176 31965 31965 1 0 1856600 117710 LSEVEEAQEASMETDPKP STIHELQQTLENDEKLSEVEEAQEASMETD VEEAQEASMETDPKP_______________ K L S K P - 2 0 0 1 0 1 5 0 0 0 1 1 1 0 2 2 1 0 0 1 0 0 18 1 1988.8885 Q6I9Y2 Q6I9Y2 187 204 THOC7 THO complex subunit 7 homolog yes yes 2 2.7248E-08 127.02 By MS/MS 7 0 1 1 8309700 0 0 8309700 8954 1474 9320 38177 31966 31966 1 0 0 1474500 LSEVLQAVTDHDIPQQLVER HCTNAYMLVYIRESKLSEVLQAVTDHDIPQ QAVTDHDIPQQLVERLQEEKRIEAQKRKER K L S E R L 1 1 0 2 0 3 2 0 1 1 3 0 0 0 1 1 1 0 0 3 0 0 20 0 2289.1965 Q93009 Q93009 524 543 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 3 1.0453E-15 162.33 By MS/MS 2 0 1 1 10746000 0 0 10746000 8955 1738 9321 38178 31967 31967 1 0 0 2428300 LSEVQASLHG MYHRAQKMGTPSCSRLSEVQASLHG_____ PSCSRLSEVQASLHG_______________ R L S H G - 1 0 0 0 0 1 1 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1039.5298 Q9NXW2 Q9NXW2 366 375 DNAJB12 DnaJ homolog subfamily B member 12 yes yes 2 0.0025855 105.14 By MS/MS 5 0 1 1 11252000 0 0 11252000 8956 2091 9322 38179 31968 31968 1 0 0 1569500 LSEVTFRPLFFK TENCIIDCLVAMVVKLSEVTFRPLFFKLFD VVKLSEVTFRPLFFKLFDWAKTEDAPKDRL K L S F K L 0 1 0 0 0 0 1 0 0 0 2 1 0 3 1 1 1 0 0 1 0 0 12 1 1482.8235 Q9H583 Q9H583 1907 1918 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2;3 5.5678E-07 165.18 By MS/MS By MS/MS 1 0 3 1 2 15531000 0 1807400 13724000 8957 1984 9323 38180;38181;38182 31969;31970;31971 31971 3 0 883450 2957100 LSFAVPFR DEMMKSYVAWDREKRLSFAVPFREMKPVIF AWDREKRLSFAVPFREMKPVIFLDVFLPRV R L S F R E 1 1 0 0 0 0 0 0 0 0 1 0 0 2 1 1 0 0 0 1 0 0 8 0 935.52289 P78527 P78527 892 899 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00021141 138.85 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 25882000 0 4212200 21670000 8958 1089 9324 38183;38184;38185;38186 31972;31973 31973 2 0 2058800 4622200 LSFLYLITGNLEK QIVEMCYQRTKNFDKLSFLYLITGNLEKLR DKLSFLYLITGNLEKLRKMMKIAEIRKDMS K L S E K L 0 0 1 0 0 0 1 1 0 1 4 1 0 1 0 1 1 0 1 0 0 0 13 0 1509.8443 P53621 P53621 703 715 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.035487 67.022 By MS/MS 2 0 1 1 4529700 0 0 4529700 8959 922 9325 38187 31974 31974 0 0 0 1023600 LSFMPFFLK LREELKPIAFARGIKLSFMPFFLKAASLGL FARGIKLSFMPFFLKAASLGLLQFPILNAS K L S L K A 0 0 0 0 0 0 0 0 0 0 2 1 1 3 1 1 0 0 0 0 0 0 9 0 1128.6042 P11182 P11182 305 313 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 2 0.0087644 90.308 By MS/MS 5 0 1 1 7774800 0 7774800 0 8960 519 9326 38188 31975 31975 1 0 2004100 0 LSFNPTQLEEQCHI EKFDKALKALPMHIRLSFNPTQLEEQCHI_ RLSFNPTQLEEQCHI_______________ R L S H I - 0 0 1 0 1 2 2 0 1 1 2 0 0 1 1 1 1 0 0 0 0 0 14 0 1714.7985 CON__P02754 CON__P02754 149 162 yes yes 2 0.026862 71.03 By MS/MS 8.5 0.5 1 1 2 3201300 3201300 0 0 + 8961 43 9327 38189;38190 31976 31976 1 2261100 0 0 LSFQHDPETSVLVLR PAAVVLQTKGSPESRLSFQHDPETSVLVLR LSFQHDPETSVLVLRKPGINVASDWSIHLR R L S L R K 0 1 0 1 0 1 1 0 1 0 3 0 0 1 1 2 1 0 0 2 0 0 15 0 1739.9206 Q14697 Q14697 915 929 GANAB Neutral alpha-glucosidase AB yes yes 2;3 0.00092162 88.021 By MS/MS 2 0 2 2 19046000 0 0 19046000 8962 1317 9328 38191;38192 31977;31978 31977 2 0 0 4304000 LSFVTVDSNLR LTGKGATEITTTITKLSFVTVDSNLRRGIP TITKLSFVTVDSNLRRGIPFTGKVLLVDGK K L S L R R 0 1 1 1 0 0 0 0 0 0 2 0 0 1 0 2 1 0 0 2 0 0 11 0 1249.6667 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 350 360 yes yes 2 0.0053176 100.48 By MS/MS By matching 2.25 0.829 1 1 2 3 1 15584000 10917000 0 4666900 + 8963 28 9329 38193;38194;38195;38196 31979 31979 1 12312000 0 905160 LSFYETGEIPR TSVFGEKLREQVEERLSFYETGEIPRKNLD VEERLSFYETGEIPRKNLDVMKEAMVQAEE R L S P R K 0 1 0 0 0 0 2 1 0 1 1 0 0 1 1 1 1 0 1 0 0 0 11 0 1310.6507 O00567 O00567 405 415 NOP56 Nucleolar protein 56 yes yes 2 5.0444E-05 144.77 By MS/MS By MS/MS 4.62 1.32 2 2 2 1 1 3 5 124700000 0 14875000 109830000 8964 130 9330 38197;38198;38199;38200;38201;38202;38203;38204 31980;31981;31982;31983;31984 31983 5 0 5308400 19899000 LSFYETGEIPRK TSVFGEKLREQVEERLSFYETGEIPRKNLD EERLSFYETGEIPRKNLDVMKEAMVQAEEA R L S R K N 0 1 0 0 0 0 2 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 12 1 1438.7456 O00567 O00567 405 416 NOP56 Nucleolar protein 56 yes yes 3 0.011786 68.44 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 166700000 9572200 3186300 153950000 8965 130 9331 38205;38206;38207;38208 31985;31986 31986 2 11044000 1358300 25489000 LSGHQFENYSFK VTYATREEAKIAMEKLSGHQFENYSFKISY MEKLSGHQFENYSFKISYIPDEEVSSPSPP K L S F K I 0 0 1 0 0 1 1 1 1 0 1 1 0 2 0 2 0 0 1 0 0 0 12 0 1455.6783 Q9Y6M1 Q9Y6M1 140 151 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 3 0.0017845 94.747 By matching By MS/MS 2.5 1.12 1 1 1 1 2 2 54409000 5283900 49125000 0 8966 2315 9332 38209;38210;38211;38212 31987;31988 31987 2 5871400 19318000 0 LSGLEQPQGALQTR TDELWASLEAAAKRKLSGLEQPQGALQTRR KLSGLEQPQGALQTRRRKKKRPGSTSP___ K L S T R R 1 1 0 0 0 3 1 2 0 0 3 0 0 0 1 1 1 0 0 0 0 0 14 0 1496.7947 Q6RFH5 Q6RFH5 360 373 WDR74 WD repeat-containing protein 74 yes yes 2 3.9534E-05 160.86 By MS/MS 5 0 1 1 13742000 0 13742000 0 8967 1499 9333 38213 31989 31989 1 0 3542400 0 LSGLNAFDIAEELVK QKAVDQPRQLFWEKKLSGLNAFDIAEELVK LSGLNAFDIAEELVKTMDLPKGLQGVGPGC K L S V K T 2 0 1 1 0 0 2 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 15 0 1617.8614 O95983 O95983 143 157 MBD3 Methyl-CpG-binding domain protein 3 yes yes 2 0.0010204 97.779 By MS/MS By MS/MS 6 0 2 1 1 4003900 0 739290 3264600 8968 351 9334 38214;38215 31990;31991 31991 2 0 255920 488410 LSGMPDLSLSFMNPR TVFAEIQGVIDACIKLSGMPDLSLSFMNPR LSGMPDLSLSFMNPRLLDDVSFHPCIRFKR K L S P R L 0 1 1 1 0 0 0 1 0 0 3 0 2 1 2 3 0 0 0 0 0 0 15 0 1663.8062 Q9Y2T2 Q9Y2T2 212 226 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.00049249 141.08 By MS/MS By MS/MS 5 0 2 1 1 7988800 0 4264000 3724800 8969 2250 9335 38216;38217 31992;31993 31993 2 0 1099100 519540 LSGSNPYTTVTPQIINSK IHKEAQRIAESNHIKLSGSNPYTTVTPQII SNPYTTVTPQIINSKWEKVQQLVPKRDHAL K L S S K W 0 0 2 0 0 1 0 1 0 2 1 1 0 0 2 3 3 0 1 1 0 0 18 0 1919 O43707 O43707 605 622 ACTN4 Alpha-actinin-4 yes yes 2 1.543E-134 274.64 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 61825000 0 56590000 5234700 8970 210 9336 38218;38219;38220 31994;31995;31996;31997 31995 4 0 25328000 1015300 LSGYEEALK LPVDQKCEHKLWKARLSGYEEALKIFQKIK KLWKARLSGYEEALKIFQKIKDEKSPEWSK R L S L K I 1 0 0 0 0 0 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1008.5128 Q14008 Q14008 25 33 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.019697 82.426 By MS/MS 1 0 1 1 12977000 0 12977000 0 8971 1279 9337 38221 31998 31998 1 0 6342900 0 LSHANSAVVLSAVK DDREAQSICERVTPRLSHANSAVVLSAVKV RLSHANSAVVLSAVKVLMKFLELLPKDSDY R L S V K V 3 0 1 0 0 0 0 0 1 0 2 1 0 0 0 3 0 0 0 3 0 0 14 0 1394.7882 P63010;Q10567 P63010 248 261 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 2;3 0.00063585 142.51 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 38781000 0 0 38781000 8972 1057;1193 9338 38222;38223;38224;38225 31999;32000;32001 32001 3 0 0 8616100 LSHETVTIELK ______________________________ FLMKLSHETVTIELKNGTQVHGTITGVDVS K L S L K N 0 0 0 0 0 0 2 0 1 1 2 1 0 0 0 1 2 0 0 1 0 0 11 0 1268.6976 P62314 P62314 10 20 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 2;3 4.264E-59 229.17 By MS/MS By MS/MS By MS/MS 8.67 0.624 5 6 1 2 4 6 535690000 17406000 36634000 481650000 8973 1022 9339 38226;38227;38228;38229;38230;38231;38232;38233;38234;38235;38236;38237 32002;32003;32004;32005;32006;32007;32008;32009;32010;32011 32008 10 9770000 22935000 121030000 LSHLKPSSEGLAIVTK KYKQRNGWSHKDLLRLSHLKPSSEGLAIVT SHLKPSSEGLAIVTKYITKGWKEVHELYKE R L S T K Y 1 0 0 0 0 0 1 1 1 1 3 2 0 0 1 3 1 0 0 1 0 0 16 1 1678.9618 P10155 P10155 185 200 TROVE2 60 kDa SS-A/Ro ribonucleoprotein yes yes 3 0.02017 50.416 By MS/MS By MS/MS 4 0 2 1 1 20175000 0 10550000 9625100 8974 507 9340 38238;38239 32012;32013 32012 2 0 3501200 1572100 LSHPLLEQLLPALR RCSVFKCLPMILDNKLSHPLLEQLLPALRY KLSHPLLEQLLPALRYSLHDNSEKVRVAFV K L S L R Y 1 1 0 0 0 1 1 0 1 0 6 0 0 0 2 1 0 0 0 0 0 0 14 0 1598.9508 Q86XI2 Q86XI2 452 465 NCAPG2 Condensin-2 complex subunit G2 yes yes 3 0.0002046 109.15 By MS/MS 2 0 1 1 2145000 0 0 2145000 8975 1558 9341 38240 32014 32014 1 0 0 484730 LSHSNPTILFDYILSQIQK LTKENVKPSGRQIGKLSHSNPTILFDYILS NPTILFDYILSQIQKYDNLITPVVDSLKYL K L S Q K Y 0 0 1 1 0 2 0 0 1 3 3 1 0 1 1 3 1 0 1 0 0 0 19 0 2216.1841 Q8NI27 Q8NI27 571 589 THOC2 THO complex subunit 2 yes yes 3 2.022E-09 117.84 By MS/MS 1.5 0.5 1 1 2 13886000 0 0 13886000 8976 1647 9342 38241;38242 32015 32015 1 0 0 3072200 LSHVPPPLFPSAPATLASR ______________________________ PPPLFPSAPATLASRSLSHWRPRPPRQLAP R L S S R S 3 1 0 0 0 0 0 0 1 0 3 0 0 1 5 3 1 0 0 1 0 0 19 0 1957.0785 O14979 O14979 7 25 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 3 0.0035701 56.081 By MS/MS 4.5 0.5 1 1 2 14423000 0 14423000 0 8977 157 9343 38243;38244 32016 32016 1 0 4194400 0 LSHYLTLLTQR FDKFGEGIIITTHDKLSHYLTLLTQRNPIE THDKLSHYLTLLTQRNPIESQFLESLADNL K L S Q R N 0 1 0 0 0 1 0 0 1 0 4 0 0 0 0 1 2 0 1 0 0 0 11 0 1343.7561 Q8N3C0 Q8N3C0 873 883 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.0011799 98.156 By MS/MS By MS/MS 1 0 2 1 1 3504300 0 3504300 0 8978 1602 9344 38245;38246 32017;32018 32017 2 0 1712900 0 LSIFDANESGFESYEALPQHK PPDAVDEPQMLTNEKLSIFDANESGFESYE NESGFESYEALPQHKLTCFSVYCKHGHLCP K L S H K L 2 0 1 1 0 1 3 1 1 1 2 1 0 2 1 3 0 0 1 0 0 0 21 0 2381.1176 P26358 P26358 386 406 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.0044621 49.089 By MS/MS 1 0 1 1 1411300 0 1411300 0 8979 667 9345 38247 32019 32019 1 0 689810 0 LSIGNTLFIDQR HYIIHELTQKTQDLKLSIGNTLFIDQRLQP DLKLSIGNTLFIDQRLQPQRKFLEDAKNFY K L S Q R L 0 1 1 1 0 1 0 1 0 2 2 0 0 1 0 1 1 0 0 0 0 0 12 0 1375.746 Q8IW75 Q8IW75 132 143 SERPINA12 Serpin A12 yes yes 2 0.00023058 131.28 By MS/MS By matching By matching 5.5 4.5 2 2 2 1 1 8841100 5057100 2949100 835010 8980 1573 9346 38248;38249;38250;38251 32020;32021 32021 2 6926400 1441500 1826200 LSIIFPLWK FVFRTFDEFQELHNKLSIIFPLWKLPGFPN QELHNKLSIIFPLWKLPGFPNRMVLGRTHI K L S W K L 0 0 0 0 0 0 0 0 0 2 2 1 0 1 1 1 0 1 0 0 0 0 9 0 1115.6743 O00443 O00443 1473 1481 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.013069 86.794 By MS/MS 1 0 1 1 2768800 0 0 2768800 8981 122 9347 38252 32022 32022 1 0 0 596580 LSILYPATTGR TARVVFVFGPDKKLKLSILYPATTGRNFDE KKLKLSILYPATTGRNFDEILRVVISLQLT K L S G R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 11 0 1190.6659 P30041 P30041 145 155 PRDX6 Peroxiredoxin-6 yes yes 2 0.0003278 126.55 By MS/MS By MS/MS 8.5 1.5 2 2 2 2 56685000 0 19051000 37634000 8982 705 9348 38253;38254;38255;38256 32023;32024;32025;32026 32025 4 0 26530000 24472000 LSINTHPSQKPLSITVR EDTVQSLTQGDGVAKLSINTHPSQKPLSIT INTHPSQKPLSITVRTKKQELSEAEQATRT K L S V R T 0 1 1 0 0 1 0 0 1 2 2 1 0 0 2 3 2 0 0 1 0 0 17 1 1890.0687 P01024 P01024 409 425 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 4 3.4748E-06 109.04 By MS/MS 9.5 0.5 1 1 2 13443000 13443000 0 0 8983 371 9349 38257;38258 32027 32027 1 10873000 0 0 LSINTQLLAR ALRLVAKPGDKLYCRLSINTQLLARVDHLM KLYCRLSINTQLLARVDHLMKVGKNNFRPP R L S A R V 1 1 1 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1127.6663 Q9UNQ2 Q9UNQ2 175 184 DIMT1 Probable dimethyladenosine transferase yes yes 2 2.0556E-16 179.21 By MS/MS By MS/MS 6 0 2 1 1 5629100 0 0 5629100 8984 2210 9350 38259;38260 32028;32029 32029 2 0 0 842170 LSISETYDLK LEKKYASSANLHLPKLSISETYDLKSVLGD LHLPKLSISETYDLKSVLGDVGITEVFSDR K L S L K S 0 0 0 1 0 0 1 0 0 1 2 1 0 0 0 2 1 0 1 0 0 0 10 0 1167.6023 CON__P34955 CON__P34955 313 322 yes yes 2 2.5738E-05 122.13 By MS/MS By MS/MS By MS/MS 6.29 2.28 1 1 2 1 1 3 3 1 1 6 3 5 255020000 153180000 23415000 78430000 + 8985 64 9351 38261;38262;38263;38264;38265;38266;38267;38268;38269;38270;38271;38272;38273;38274 32030;32031;32032;32033;32034;32035;32036;32037;32038;32039;32040 32037 11 126420000 57194000 12874000 LSITEVTK NSSNPVLKNMWPEGKLSITEVTKRPLTAAT NMWPEGKLSITEVTKRPLTAATLFKNSMIA K L S T K R 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 1 2 0 0 1 0 0 8 0 889.51205 O94832 O94832 552 559 MYO1D Unconventional myosin-Id yes yes 2 0.038966 75.692 By MS/MS 1.5 0.5 1 1 2 9394500 0 0 9394500 8986 299 9352 38275;38276 32041 32041 1 0 0 2097600 LSITGTYDLK LENEDRRSASLHLPKLSITGTYDLKSVLGQ LHLPKLSITGTYDLKSVLGQLGITKVFSNG K L S L K S 0 0 0 1 0 0 0 1 0 1 2 1 0 0 0 1 2 0 1 0 0 0 10 0 1109.5968 P01009 P01009 315 324 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.0061882 95.358 By MS/MS 7 2.55 1 1 1 1 4 103940000 103940000 0 0 8987 367 9353 38277;38278;38279;38280 32042;32043;32044 32043 3 72542000 0 0 LSKEDIER TGKENKITITNDKGRLSKEDIERMVQEAEK ITNDKGRLSKEDIERMVQEAEKYKAEDEKQ R L S E R M 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 1 988.51892 P11142 P11142 510 517 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 0.00039036 150.4 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 34769000 0 17917000 16852000 8988 517 9354 38281;38282;38283 32045;32046 32046 2 0 7586000 3268500 LSKEEIER TGKANKITITNDKGRLSKEEIERMVQEAEK ITNDKGRLSKEEIERMVQEAEKYKAEDEVQ R L S E R M 0 1 0 0 0 0 3 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 8 1 1002.5346 P0DMV9;P0DMV8 P0DMV9 510 517 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 0.00042903 150.05 By MS/MS By MS/MS 3 0 2 1 1 38418000 0 13973000 24445000 8989 501 9355 38284;38285 32047;32048 32048 2 0 5956900 4741100 LSKNEVLMVNIGSLSTGGR GVRTEGDKKAAKVQKLSKNEVLMVNIGSLS EVLMVNIGSLSTGGRVSAVKADLGKIVLTN K L S G R V 0 1 2 0 0 0 1 3 0 1 3 1 1 0 0 3 1 0 0 2 0 0 19 1 1974.0568 P41091;Q2VIR3 P41091 398 416 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.00013423 84.765 By MS/MS 5 0.816 1 1 1 3 11016000 0 11016000 0 8990 790 9356 38286;38287;38288 32049 32049 1 0 3462400 0 LSLDDLLQR ETMLPLLLTAVSEGRLSLDDLLQRLHHNPR AVSEGRLSLDDLLQRLHHNPRRIFHLPPQE R L S Q R L 0 1 0 2 0 1 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 9 0 1071.5924 P27708 P27708 1723 1731 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 2.6407E-11 170.66 By MS/MS 1.5 0.5 1 1 2 9289100 0 0 9289100 8991 681 9357 38289;38290 32050 32050 1 0 0 2010800 LSLEGDHSTPPSAYGSVK ______________________________ EGDHSTPPSAYGSVKAYTNFDAERDALNIE K L S V K A 1 0 0 1 0 0 1 2 1 0 2 1 0 0 2 4 1 0 1 1 0 0 18 0 1843.8952 P07355;A6NMY6 P07355 11 28 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2;3 2.1012E-16 177.38 By matching By MS/MS By MS/MS 6 0.632 1 3 1 1 1 3 121310000 4684700 17588000 99040000 8992 459 9358 38291;38292;38293;38294;38295 32051;32052;32053;32054 32052 4 6237700 6088300 14821000 LSLGTYASLHGR VFHISCFRCSYCNNKLSLGTYASLHGRIYC NNKLSLGTYASLHGRIYCKPHFNQLFKSKG K L S G R I 1 1 0 0 0 0 0 2 1 0 3 0 0 0 0 2 1 0 1 0 0 0 12 0 1273.6779 Q9UHB6 Q9UHB6 424 435 LIMA1 LIM domain and actin-binding protein 1 yes yes 3 0.00085727 103.91 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 29416000 0 6774100 22642000 8993 2150 9359 38296;38297;38298 32055;32056;32057 32056 3 0 2887800 4754400 LSLINFR DQKILLLLRAYEQNKLSLINFRVLLWGPAA LRAYEQNKLSLINFRVLLWGPAAVEHHKTC K L S F R V 0 1 1 0 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 7 0 861.50724 O60287 O60287 1556 1562 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.033224 89.903 By MS/MS 1 0 1 1 2086300 0 2086300 0 8994 224 9360 38299 32058 32058 1 0 1019800 0 LSLLDSVVNQR NRDVIEDTLGCLLGRLSLLDSVVNQRCHQM LLGRLSLLDSVVNQRCHQMKERLQQILNFQ R L S Q R C 0 1 1 1 0 1 0 0 0 0 3 0 0 0 0 2 0 0 0 2 0 0 11 0 1242.6932 Q8NF91 Q8NF91 6465 6475 SYNE1 Nesprin-1 yes yes 2 0.010765 92.051 By MS/MS 1 0 1 1 0 0 0 0 8995 1640 9361 38300 32059 32059 1 0 0 0 LSLLLNDISR RELEMIGFIENNVSKLSLLLNDISRKSEGL NNVSKLSLLLNDISRKSEGLSGRVLRKLPF K L S S R K 0 1 1 1 0 0 0 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1142.6659 Q15645 Q15645 369 378 TRIP13 Pachytene checkpoint protein 2 homolog yes yes 2 0.0069776 93.649 By MS/MS 5 0 1 1 4332500 0 4332500 0 8996 1377 9362 38301 32060 32060 1 0 1116800 0 LSLNNGSITHLVIRPNGR IVCRALQFPPEGWLRLSLNNGSITHLVIRP NNGSITHLVIRPNGRVALRTLGDTGFMPPD R L S G R V 0 2 3 0 0 0 0 2 1 2 3 0 0 0 1 2 1 0 0 1 0 0 18 1 1960.0966 Q96HS1 Q96HS1 252 269 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 4 2.9203E-09 126.63 By matching By MS/MS 6 0 2 1 1 11742000 0 4237100 7505400 8997 1796 9363 38302;38303 32061 32061 1 0 1466700 1122900 LSLQDAVSQGVIDQDMATR QACTGGIIHPTTGQKLSLQDAVSQGVIDQD DAVSQGVIDQDMATRLKPAQKAFIGFEGVK K L S T R L 2 1 0 3 0 3 0 1 0 1 2 0 1 0 0 2 1 0 0 2 0 0 19 0 2046.0052 P15924 P15924 2669 2687 DSP Desmoplakin yes yes 2;3 4.1932E-23 191.01 By MS/MS By MS/MS 1 0 3 1 2 26508000 0 8374200 18133000 8998 572 9364 38304;38305;38306 32062;32063;32064 32063 3 0 4093200 3907100 LSLSNAISTALPLTQLR VTGLKLQGATCNNNKLSLSNAISTALPLTQ LSNAISTALPLTQLRWVKQTNTEKKASVVT K L S L R W 2 1 1 0 0 1 0 0 0 1 5 0 0 0 1 3 2 0 0 0 0 0 17 0 1797.036 Q14204 Q14204 4575 4591 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0069389 72.496 By MS/MS 1 0 1 1 1591500 0 1591500 0 8999 1292 9365 38307 32065 32065 1 0 777910 0 LSLTGHISTVR DRTIKIWDLASGKLKLSLTGHISTVRGVIV GKLKLSLTGHISTVRGVIVSTRSPYLFSCG K L S V R G 0 1 0 0 0 0 0 1 1 1 2 0 0 0 0 2 2 0 0 1 0 0 11 0 1182.6721 O43660 O43660 240 250 PLRG1 Pleiotropic regulator 1 yes yes 2 0.0039218 104.05 By MS/MS 4 0 1 1 6160100 0 6160100 0 9000 205 9366 38308 32066 32066 1 0 2044300 0 LSLTQSDISHIGSMR GFTILSSKSLVLGQKLSLTQSDISHIGSMR LSLTQSDISHIGSMRVEGIVHPTTAEIDLK K L S M R V 0 1 0 1 0 1 0 1 1 2 2 0 1 0 0 4 1 0 0 0 0 0 15 0 1643.8301 Q9P0M6 Q9P0M6 197 211 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 6.9622E-73 238.98 By MS/MS By MS/MS 5.14 0.833 1 5 1 3 4 258160000 0 23805000 234350000 9001 2117 9367;9368 38309;38310;38311;38312;38313;38314;38315 32067;32068;32069;32070;32071;32072 32070 702 6 0 6391000 32688000 LSLTYER ELNLTGSFWNDSFARLSLTYERLFGTTVTF FWNDSFARLSLTYERLFGTTVTFKFILANR R L S E R L 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 0 7 0 880.46543 Q15904 Q15904 309 315 ATP6AP1 V-type proton ATPase subunit S1 yes yes 2 0.010687 119.57 By MS/MS 4.5 0.5 1 1 2 13931000 0 0 13931000 9002 1382 9369 38316;38317 32073 32073 1 0 0 2022600 LSLYQAMR LGAVGGVRLLPSGQRLSLYQAMRQKLLGPR LLPSGQRLSLYQAMRQKLLGPRVALALLEA R L S M R Q 1 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 8 0 980.51134 P58107 P58107 944 951 EPPK1 Epiplakin yes yes 2 0.033587 85.357 By MS/MS 2 0 1 1 0 0 0 0 9003 958 9370 38318 32074 32074 1 0 0 0 LSMFVLLPSHSK EVKAQILEMRYTKGKLSMFVLLPSHSKDNL KGKLSMFVLLPSHSKDNLKGLEELERKITY K L S S K D 0 0 0 0 0 0 0 0 1 0 3 1 1 1 1 3 0 0 0 1 0 0 12 0 1357.7428 Q96P63 Q96P63 252 263 SERPINB12 Serpin B12 yes yes 2;3 0.009057 95.822 By MS/MS By matching By matching 6.65 2.59 1 1 1 2 2 4 1 2 3 13 1 3 71876000 52402000 1412300 18061000 9004 1816 9371 38319;38320;38321;38322;38323;38324;38325;38326;38327;38328;38329;38330;38331;38332;38333;38334;38335 32075;32076;32077;32078;32079;32080;32081;32082 32081 8 54347000 810970 4052700 LSMKPEPLFR RSIEEACFTLQYLNKLSMKPEPLFRSVGNT QYLNKLSMKPEPLFRSVGNTIDPVILFQKM K L S F R S 0 1 0 0 0 0 1 0 0 0 2 1 1 1 2 1 0 0 0 0 0 0 10 1 1216.6638 P46821 P46821 391 400 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 0.00041586 107.83 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 25963000 0 2571700 23392000 9005 834 9372 38336;38337;38338 32083;32084;32085 32084 3 0 1257000 5072300 LSMSQLNEK NCNLICGDEYGPETRLSMSQLNEKETPFEL YGPETRLSMSQLNEKETPFELIEALLKYIE R L S E K E 0 0 1 0 0 1 1 0 0 0 2 1 1 0 0 2 0 0 0 0 0 0 9 0 1048.5223 Q08211 Q08211 622 630 DHX9 ATP-dependent RNA helicase A yes yes 2 2.8868E-11 170.3 By MS/MS By MS/MS By MS/MS 2.4 0.49 3 2 1 2 2 102660000 9161000 49460000 44039000 9006 1182 9373 38339;38340;38341;38342;38343 32086;32087;32088;32089 32088 4 11038000 22121000 9534400 LSMWDRPDDLIGR WTGDERVFFYNPTTRLSMWDRPDDLIGRAD TRLSMWDRPDDLIGRADVDKIIQEPPHKKG R L S G R A 0 2 0 3 0 0 0 1 0 1 2 0 1 0 1 1 0 1 0 0 0 0 13 1 1572.7719 O14776 O14776 553 565 TCERG1 Transcription elongation regulator 1 yes yes 2;3 0.0013729 125.24 By MS/MS 1.67 0.471 1 2 3 22605000 0 0 22605000 9007 145 9374 38344;38345;38346 32090;32091 32090 2 0 0 5069400 LSNIFVIGK VVHVKDANGNSFATRLSNIFVIGKGNKPWI NSFATRLSNIFVIGKGNKPWISLPRGKGIR R L S G K G 0 0 1 0 0 0 0 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 9 0 989.59097 P62701 P62701 222 230 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.00045807 136.8 By MS/MS By MS/MS By MS/MS 7.57 1.59 2 3 2 1 3 3 658790000 14694000 253860000 390240000 9008 1029 9375 38347;38348;38349;38350;38351;38352;38353 32092;32093;32094;32095;32096;32097 32092 4 31670000 184030000 75421000 LSNKVEAIDVEEAKR LESLIRLAEAHAKVRLSNKVEAIDVEEAKR LSNKVEAIDVEEAKRLHREALKQSATDPRT R L S K R L 2 1 1 1 0 0 3 0 0 1 1 2 0 0 0 1 0 0 0 2 0 0 15 2 1699.9105 P33991 P33991 749 763 MCM4 DNA replication licensing factor MCM4 yes yes 4 0.0099427 62.377 By MS/MS 2 0 1 1 5957200 0 0 5957200 9009 731 9376 38354 32098 32098 1 0 0 1346200 LSNRPAFMPSEGK CQLEINFNTLQTKLRLSNRPAFMPSEGKMV LRLSNRPAFMPSEGKMVSDINNGWQHLEQA R L S G K M 1 1 1 0 0 0 1 1 0 0 1 1 1 1 2 2 0 0 0 0 0 0 13 1 1432.7133 O43707 O43707 366 378 ACTN4 Alpha-actinin-4 yes yes 2;3 2.917E-06 164.9 By MS/MS By MS/MS 2.29 0.881 1 4 1 1 4 3 126430000 0 72966000 53466000 9010 210 9377 38355;38356;38357;38358;38359;38360;38361 32099;32100;32101;32102;32103 32100 5 0 32820000 11724000 LSNRPAFMPSEGR CQLEINFNTLQTKLRLSNRPAFMPSEGRMV LRLSNRPAFMPSEGRMVSDINNAWGCLEQV R L S G R M 1 2 1 0 0 0 1 1 0 0 1 0 1 1 2 2 0 0 0 0 0 0 13 1 1460.7194 P12814 P12814 347 359 ACTN1 Alpha-actinin-1 yes yes 2;3 0.0017604 99.752 By MS/MS By MS/MS 2.25 0.433 3 1 3 1 28386000 0 18990000 9396400 9011 540 9378 38362;38363;38364;38365 32104;32105;32106 32104 3 0 8501200 2123400 LSNTQGVVSAFSTMMSVHR PLTTNLINLLAENGRLSNTQGVVSAFSTMM QGVVSAFSTMMSVHRGEVPCTVTSASPLEE R L S H R G 1 1 1 0 0 1 0 1 1 0 1 0 2 1 0 4 2 0 0 3 0 0 19 0 2050.9928 P48047 P48047 118 136 ATP5O ATP synthase subunit O, mitochondrial yes yes 3 0.00055752 69.763 By MS/MS By MS/MS 7 0 2 1 1 22556000 0 3890800 18665000 9012 841 9379 38366;38367 32107;32108 32108 2 0 2234100 3312000 LSNVNLQEK GRMSSKPINFSVILKLSNVNLQEKAYRDGL FSVILKLSNVNLQEKAYRDGLVEQLYDLTL K L S E K A 0 0 2 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1043.5611 Q9Y3T9 Q9Y3T9 508 516 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.00037998 138.06 By matching By MS/MS 1.75 0.829 2 1 1 1 3 57562000 33541000 0 24021000 9013 2277 9380 38368;38369;38370;38371 32109 32109 1 33541000 0 4725700 LSPEDYTLK TLPAITLKLGGKGYKLSPEDYTLKVSQAGK GGKGYKLSPEDYTLKVSQAGKTLCLSGFMG K L S L K V 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 1 1 0 1 0 0 0 9 0 1064.539 P07339 P07339 349 357 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2 0.026846 78.192 By matching By MS/MS 7 0 2 1 1 7622000 0 1492800 6129200 9014 458 9381 38372;38373 32110 32110 1 0 857180 1087600 LSPEELLLR AALLRDGETLEELMKLSPEELLLRWANFHL LEELMKLSPEELLLRWANFHLENSGWQKIN K L S L R W 0 1 0 0 0 0 2 0 0 0 4 0 0 0 1 1 0 0 0 0 0 0 9 0 1068.6179 P13797;Q14651;P13796 P13797 267 275 PLS3;PLS1;LCP1 Plastin-3;Plastin-1;Plastin-2 yes no 2 0.00026797 139.88 By MS/MS By MS/MS By MS/MS 3.62 1.87 1 1 3 1 1 1 1 4 3 28318000 5438700 8770000 14110000 9015 551 9382 38374;38375;38376;38377;38378;38379;38380;38381 32111;32112;32113;32114 32114 4 6275000 3551100 2637500 LSPESAEEYIEYLK PLPETAVRGYRRFLKLSPESAEEYIEYLKS KLSPESAEEYIEYLKSSDRLDEAAQRLATV K L S L K S 1 0 0 0 0 0 4 0 0 1 2 1 0 0 1 2 0 0 2 0 0 0 14 0 1669.8087 Q9HCS7 Q9HCS7 175 188 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 0.027953 70.488 By MS/MS 2 0 1 1 4524500 0 0 4524500 9016 2014 9383 38382 32115 32115 1 0 0 1022400 LSPETQSAIEQEIR MSEKLGVMTYSDTGKLSPETQSAIEQEIRI KLSPETQSAIEQEIRILLRDSYERAKHILK K L S I R I 1 1 0 0 0 2 3 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 14 0 1599.8104 Q96TA2 Q96TA2 709 722 YME1L1 ATP-dependent zinc metalloprotease YME1L1 yes yes 2 0.021191 73.848 By MS/MS 2.5 0.5 1 1 2 11129000 0 0 11129000 9017 1842 9384 38383;38384 32116 32116 1 0 0 2255000 LSPFMADIR GEYAVHVLCNSEDIRLSPFMADIRDAPQDF NSEDIRLSPFMADIRDAPQDFHPDRVKARG R L S I R D 1 1 0 1 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 0 9 0 1048.5376 P21333 P21333 656 664 FLNA Filamin-A yes yes 2 0.0083398 91.069 By matching By MS/MS By MS/MS 1 0 3 1 1 1 12215000 1416000 10799000 0 9018 623 9385 38385;38386;38387 32117;32118 32117 2 1416000 5278500 0 LSPGGYFIGTTPNSFELIR SYEQADMMLRNACERLSPGGYFIGTTPNSF GYFIGTTPNSFELIRRLEASETESFGNEIY R L S I R R 0 1 1 0 0 0 1 3 0 2 2 0 0 2 2 2 2 0 1 0 0 0 19 0 2068.0629 O43148 O43148 308 326 RNMT mRNA cap guanine-N7 methyltransferase yes yes 2 0.00068873 80.522 By matching By MS/MS By matching 5.2 1.17 2 1 1 1 1 3 1 12300000 5088300 6447300 764870 9019 187 9386 38388;38389;38390;38391;38392 32119 32119 1 3969800 2105000 135720 LSPISHGNTIALFFR LPPSDTIYSYVRPERLSPISHGNTIALFFR LSPISHGNTIALFFRSLLPNYTMEGERPEE R L S F R S 1 1 1 0 0 0 0 1 1 2 2 0 0 2 1 2 1 0 0 0 0 0 15 0 1671.9097 Q9BQ70 Q9BQ70 601 615 TCF25 Transcription factor 25 yes yes 3 0.0003351 92.265 By MS/MS 3 0 1 1 4696500 0 4696500 0 9020 1880 9387 38393 32120 32120 1 0 2002100 0 LSPLAQELR FREGARQKVQELQDKLSPLAQELRDRARAH QELQDKLSPLAQELRDRARAHVETLRQQLA K L S L R D 1 1 0 0 0 1 1 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 9 0 1025.5869 CON__P15497 CON__P15497 164 172 yes yes 2 8.7286E-32 200.16 By MS/MS By MS/MS By MS/MS 6.69 2.84 1 1 1 1 1 1 3 1 3 3 9 3 4 1806200000 639000000 87311000 1079900000 + 9021 59 9388 38394;38395;38396;38397;38398;38399;38400;38401;38402;38403;38404;38405;38406;38407;38408;38409 32121;32122;32123;32124;32125;32126;32127;32128;32129;32130;32131;32132;32133;32134;32135 32133 15 1028800000 177660000 778790000 LSPLAQELRDR FREGARQKVQELQDKLSPLAQELRDRARAH LQDKLSPLAQELRDRARAHVETLRQQLAPY K L S D R A 1 2 0 1 0 1 1 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 11 1 1296.715 CON__P15497 CON__P15497 164 174 yes yes 2;3 0.0013533 99.215 By MS/MS By MS/MS By matching 9.33 1.11 1 1 4 3 2 1 21789000 14557000 5687400 1544100 + 9022 59 9389 38410;38411;38412;38413;38414;38415 32136;32137;32138;32139 32138 4 24990000 28774000 3377200 LSPLGEEMR LQEGARQKLHELQEKLSPLGEEMRDRARAH HELQEKLSPLGEEMRDRARAHVDALRTHLA K L S M R D 0 1 0 0 0 0 2 1 0 0 2 0 1 0 1 1 0 0 0 0 0 0 9 0 1030.5117 P02647 P02647 165 173 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.0017334 106.94 By MS/MS 9.5 0.5 1 1 2 98418000 98418000 0 0 9023 389 9390 38416;38417 32140;32141 32140 2 60380000 0 0 LSPLGEEMRDR LQEGARQKLHELQEKLSPLGEEMRDRARAH LQEKLSPLGEEMRDRARAHVDALRTHLAPY K L S D R A 0 2 0 1 0 0 2 1 0 0 2 0 1 0 1 1 0 0 0 0 0 0 11 1 1301.6398 P02647 P02647 165 175 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 5.5011E-13 182.46 By MS/MS 9 0 1 1 22744000 22744000 0 0 9024 389 9391 38418 32142 32142 1 12766000 0 0 LSPPSSSAASSYSFSDLNSTR LYEKKIFEYETQRRRLSPPSSSAASSYSFS SAASSYSFSDLNSTRGDADMYDLPKKEDAL R L S T R G 2 1 1 1 0 0 0 0 0 0 2 0 0 1 2 9 1 0 1 0 0 0 21 0 2159.9971 P50402 P50402 48 68 EMD Emerin yes yes 2;3 2.8117E-142 280.97 By MS/MS By MS/MS 6 0 4 2 2 64577000 0 9866500 54710000 9025 878 9392 38419;38420;38421;38422 32143;32144;32145;32146;32147;32148 32146 6 0 3415400 8185200 LSPPYSSPQEFAQDVGR GTLDLTLIRARLQEKLSPPYSSPQEFAQDV PPYSSPQEFAQDVGRMFKQFNKLTEDKADV K L S G R M 1 1 0 1 0 2 1 1 0 0 1 0 0 1 3 3 0 0 1 1 0 0 17 0 1876.8955 Q13263 Q13263 751 767 TRIM28 Transcription intermediary factor 1-beta yes yes 2 1.3148E-19 191.48 By MS/MS By MS/MS 3.67 2.32 2 3 2 2 2 1 6 6 93580000 0 30397000 63183000 9026 1235 9393 38423;38424;38425;38426;38427;38428;38429;38430;38431;38432;38433;38434 32149;32150;32151;32152;32153;32154;32155;32156;32157;32158;32159 32157 11 0 13406000 12927000 LSPSPSSR SAYRKLLEGEEERLKLSPSPSSRVTVSRAS GEEERLKLSPSPSSRVTVSRASSSRSVRTT K L S S R V 0 1 0 0 0 0 0 0 0 0 1 0 0 0 2 4 0 0 0 0 0 0 8 0 829.42938 P20700;Q03252 P20700 390 397 LMNB1;LMNB2 Lamin-B1;Lamin-B2 no no 2 0.048834 73.248 By matching By MS/MS 3.33 0.471 2 1 1 2 2489400 1135500 0 1353900 9027 619;1156 9394 38435;38436;38437 32160 32160 1 1310100 0 260830 LSPSPTSQR HAYRKLLEGEEERLRLSPSPTSQRSRGRAS EEERLRLSPSPTSQRSRGRASSHSSQTQGG R L S Q R S 0 1 0 0 0 1 0 0 0 0 1 0 0 0 2 3 1 0 0 0 0 0 9 0 971.50361 P02545 P02545 389 397 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.00025491 140.09 By MS/MS 3 0 1 1 13006000 0 0 13006000 9028 387 9395 38438 32161 32161 1 0 0 2522500 LSPSTSGPHSHDYLPQER LDLQQGQNLLQGLSKLSPSTSGPHSHDYLP STSGPHSHDYLPQEREGEGGLSLQVEPEWR K L S E R E 0 1 0 1 0 1 1 1 2 0 2 0 0 0 3 4 1 0 1 0 0 0 18 0 2006.9446 Q9HCE1 Q9HCE1 968 985 MOV10 Putative helicase MOV-10 yes yes 3;4 5.3983E-05 97.284 By MS/MS By MS/MS 2 0 3 2 1 17553000 0 13675000 3878100 9029 2011 9396 38439;38440;38441 32162;32163;32164 32162 3 0 6158100 876380 LSPVPVPR YRDDFYDRLFDYRGRLSPVPVPRAVPVKRP LFDYRGRLSPVPVPRAVPVKRPRVTVPLVR R L S P R A 0 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 2 0 0 8 0 863.52289 Q9UKM9 Q9UKM9 134 141 RALY RNA-binding protein Raly yes yes 2 0.011048 92.467 By MS/MS By MS/MS 4.86 1.64 1 1 2 2 1 4 3 106840000 0 60275000 46563000 9030 2181 9397 38442;38443;38444;38445;38446;38447;38448 32165;32166;32167 32167 3 0 20770000 6899300 LSQEDPDYGIR TDQGIKNLSVEDAARLSQEDPDYGIRDLFN DAARLSQEDPDYGIRDLFNAIATGKYPSWT R L S I R D 0 1 0 2 0 1 1 1 0 1 1 0 0 0 1 1 0 0 1 0 0 0 11 0 1291.6044 P04040 P04040 253 263 CAT Catalase yes yes 2 0.0011567 112.75 By MS/MS 8.5 0.5 1 1 2 5229800 5229800 0 0 9031 408 9398 38449;38450 32168;32169 32169 2 2935500 0 0 LSQILTDFPK YMRKVKFTQQNYHDRLSQILTDFPKLDDIH NYHDRLSQILTDFPKLDDIHPFYADLMNIL R L S P K L 0 0 0 1 0 1 0 0 0 1 2 1 0 1 1 1 1 0 0 0 0 0 10 0 1160.6441 Q9BZE4 Q9BZE4 62 71 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 4.4211E-07 158.76 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 3 2 120210000 0 51490000 68723000 9032 1941 9399 38451;38452;38453;38454;38455 32170;32171 32171 2 0 21672000 12345000 LSQLEEHLSQLQDNPPQEK DKKCLEEKNEILQGKLSQLEEHLSQLQDNP EEHLSQLQDNPPQEKGEVLGDVLQLETLKQ K L S E K G 0 0 1 1 0 4 3 0 1 0 4 1 0 0 2 2 0 0 0 0 0 0 19 0 2232.1022 Q14980 Q14980 387 405 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 0 399.73 By MS/MS By MS/MS 1 0 3 1 2 68533000 0 17410000 51122000 9033 1327 9400 38456;38457;38458 32172;32173;32174 32174 3 0 8509900 11015000 LSQNNFALGYK WLAGYQMSFDTAKSKLSQNNFALGYKAADF AKSKLSQNNFALGYKAADFQLHTHVNDGTE K L S Y K A 1 0 2 0 0 1 0 1 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1253.6404 Q9Y277 Q9Y277 164 174 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 0.00094736 114.89 By matching By matching By MS/MS 5 1 2 2 1 2 1 44794000 3980800 6165500 34647000 9034 2236 9401 38459;38460;38461;38462 32175 32175 1 3105700 2070700 5183600 LSQSGHMLLNLSR GEAGQNLLEMMACDRLSQSGHMLLNLSRGK DRLSQSGHMLLNLSRGKQDFLKEIVETFAN R L S S R G 0 1 1 0 0 1 0 1 1 0 4 0 1 0 0 3 0 0 0 0 0 0 13 0 1454.7664 A6NKT7;Q7Z3J3;P0DJD0;P0DJD1;P49792 P49792 351 363 RGPD3;RGPD4;RGPD1;RGPD2;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;E3 SUMO-protein ligase RanBP2 no no 2 0.02297 77.358 By MS/MS 1 0 1 1 8017600 0 0 8017600 9035 871;17 9402 38463 32176 32176 1 0 0 1727500 LSQSLLELWR TGKPYVPLLEAEEVRLSQSLLELWRRRGPV AEEVRLSQSLLELWRRRGPVWQEAPQLPVD R L S W R R 0 1 0 0 0 1 1 0 0 0 4 0 0 0 0 2 0 1 0 0 0 0 10 0 1243.6925 Q7L2E3 Q7L2E3 413 422 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 4.445E-39 214.93 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 31550000 0 8382100 23168000 9036 1522 9403 38464;38465;38466;38467 32177;32178;32179;32180 32179 3 0 3774600 5128400 LSQVSDSVSGQTVVDPK MRKIGQARNTLMDMRLSQVSDSVSGQTVVD QVSDSVSGQTVVDPKGYLTDLNSMIPTHGG R L S P K G 0 0 0 2 0 2 0 1 0 0 1 1 0 0 1 4 1 0 0 4 0 0 17 0 1744.8843 O94906 O94906 255 271 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 8.221E-06 124.51 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 36397000 0 11190000 25207000 9037 305 9404 38468;38469;38470;38471 32181;32182;32183 32183 3 0 4965300 5532200 LSSAWPGTLR PDDLTASWPDWALPRLSSAWPGTLRSGMVP WALPRLSSAWPGTLRSGMVPRGPTATARFG R L S L R S 1 1 0 0 0 0 0 1 0 0 2 0 0 0 1 2 1 1 0 0 0 0 10 0 1086.5822 Q9UJY1 Q9UJY1 56 65 HSPB8 Heat shock protein beta-8 yes yes 2 0.00010286 146.23 By matching By MS/MS By matching 6.67 0.471 1 2 1 1 1 34014000 1278100 16750000 15986000 9038 2173 9405 38472;38473;38474 32184 32184 1 1701800 9617800 2836700 LSSEMNTSTVNSAR EELEQTYHAKLENARLSSEMNTSTVNSARE RLSSEMNTSTVNSAREELMESRMRIESLSS R L S A R E 1 1 2 0 0 0 1 0 0 0 1 0 1 0 0 4 2 0 0 1 0 0 14 0 1495.6937 P20700 P20700 277 290 LMNB1 Lamin-B1 yes yes 2 3.649E-196 309.94 By MS/MS By MS/MS By MS/MS 4.28 2.47 2 2 5 2 2 2 1 1 1 1 8 9 1212500000 28187000 310860000 873440000 9039 619 9406;9407 38475;38476;38477;38478;38479;38480;38481;38482;38483;38484;38485;38486;38487;38488;38489;38490;38491;38492 32185;32186;32187;32188;32189;32190;32191;32192;32193;32194;32195;32196;32197;32198;32199;32200;32201;32202;32203 32198 271 19 32521000 131770000 164360000 LSSGFDDIDLPSAVK VHGFNSYGSHRTLQRLSSGFDDIDLPSAVK LSSGFDDIDLPSAVKYLMASDPNLQVLGAA R L S V K Y 1 0 0 3 0 0 0 1 0 1 2 1 0 1 1 3 0 0 0 1 0 0 15 0 1562.7828 Q9Y446 Q9Y446 312 326 PKP3 Plakophilin-3 yes yes 2 0.049671 59.898 By matching By MS/MS 3 0.816 1 1 1 1 2 10444000 0 1782800 8661500 9040 2282 9408 38493;38494;38495 32204 32204 1 0 802840 1568700 LSSLIILMPHHVEPLER EKEKLQIVEMPLAHKLSSLIILMPHHVEPL SLIILMPHHVEPLERLEKLLTKEQLKIWMG K L S E R L 0 1 0 0 0 0 2 0 2 2 4 0 1 0 2 2 0 0 0 1 0 0 17 0 1983.0976 P50454 P50454 264 280 SERPINH1 Serpin H1 yes yes 3;4 0.00014176 94.544 By MS/MS 5 0 2 2 18549000 0 0 18549000 9041 879 9409 38496;38497 32205;32206 32206 2 0 0 2587300 LSSNAVSQITR EIQDVSCAWKELNRKLSSNAVSQITRMCLL LNRKLSSNAVSQITRMCLLKGNMGVCFDVP K L S T R M 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 3 1 0 0 1 0 0 11 0 1174.6306 Q9BQ39 Q9BQ39 612 622 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.00023846 135.55 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 34515000 0 9148000 25367000 9042 1876 9410 38498;38499;38500;38501 32207;32208;32209 32208 2 0 3943300 4919900 LSSPATLNSR NFNGNTLDNDIMLIKLSSPATLNSRVATVS IMLIKLSSPATLNSRVATVSLPRSCAAAGT K L S S R V 1 1 1 0 0 0 0 0 0 0 2 0 0 0 1 3 1 0 0 0 0 0 10 0 1044.5564 CON__P00761 CON__P00761 98 107 yes yes 2 6.2887E-38 180.44 By MS/MS By MS/MS By MS/MS 5.38 3.13 8 7 4 4 6 4 4 5 6 7 33 15 7 38854000000 33614000000 4269600000 970330000 + 9043 32 9411 38502;38503;38504;38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515;38516;38517;38518;38519;38520;38521;38522;38523;38524;38525;38526;38527;38528;38529;38530;38531;38532;38533;38534;38535;38536;38537;38538;38539;38540;38541;38542;38543;38544;38545;38546;38547;38548;38549;38550;38551;38552;38553;38554;38555;38556 32210;32211;32212;32213;32214;32215;32216;32217;32218;32219;32220;32221;32222;32223;32224;32225;32226;32227;32228;32229;32230;32231;32232;32233;32234;32235;32236;32237;32238;32239;32240;32241;32242;32243;32244;32245;32246;32247;32248;32249;32250;32251;32252;32253;32254;32255;32256;32257;32258;32259;32260;32261;32262;32263;32264;32265;32266;32267;32268;32269;32270;32271;32272;32273;32274;32275;32276;32277;32278;32279;32280;32281;32282;32283;32284;32285 32282 76 41564000000 8203900000 177500000 LSSQISAGEEK NLTVNGGGWNEKSVKLSSQISAGEEKWNSV KSVKLSSQISAGEEKWNSVSPASAGKRKTE K L S E K W 1 0 0 0 0 1 2 1 0 1 1 1 0 0 0 3 0 0 0 0 0 0 11 0 1147.5721 Q86UE4 Q86UE4 293 303 MTDH Protein LYRIC yes yes 2 3.1128E-23 144.65 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 8930900 0 4784500 4146400 9044 1546 9412 38557;38558;38559;38560 32286;32287;32288 32287 3 0 2039600 617480 LSSSGIWANTSPEAELFPALRPR GDLSLRPEDGVWALRLSSSGIWANTSPEAE NTSPEAELFPALRPRRVGIALDYEGGTVTF R L S P R R 3 2 1 0 0 0 2 1 0 1 3 0 0 1 3 4 1 1 0 0 0 0 23 1 2498.2918 Q12899 Q12899 465 487 TRIM26 Tripartite motif-containing protein 26 yes yes 3 1.2182E-05 77.681 By MS/MS 4 0 1 1 3757900 0 3757900 0 9045 1208 9413 38561 32289 32289 1 0 1247100 0 LSSSLAAMLIGILHMR ADLLSRLSRCCIMGRLSSSLAAMLIGILHM SSSLAAMLIGILHMRSSFSGWKYSAKDWLM R L S M R S 2 1 0 0 0 0 0 1 1 2 4 0 2 0 0 3 0 0 0 0 0 0 16 0 1711.9477 Q9NXF1 Q9NXF1 645 660 TEX10 Testis-expressed sequence 10 protein yes yes 3 1.7422E-05 105.03 By MS/MS 2.5 0.5 1 1 2 5346200 0 0 5346200 9046 2089 9414 38562;38563 32290;32291 32290 2 0 0 1165400 LSSWDQAETPGHTPSLR WDQTADQTPGATPKKLSSWDQAETPGHTPS SWDQAETPGHTPSLRWDETPGRAKGSETPG K L S L R W 1 1 0 1 0 1 1 1 1 0 2 0 0 0 2 3 2 1 0 0 0 0 17 0 1880.9017 O75533 O75533 215 231 SF3B1 Splicing factor 3B subunit 1 yes yes 3 9.6258E-06 102.29 By MS/MS By MS/MS 2 0 2 1 1 28841000 0 5577000 23264000 9047 270 9415 38564;38565 32292;32293 32293 2 0 2511400 5257100 LSSWVLLMK MMKRLGMFNIQHCKKLSSWVLLMKYLGNAT IQHCKKLSSWVLLMKYLGNATAIFFLPDEG K L S M K Y 0 0 0 0 0 0 0 0 0 0 3 1 1 0 0 2 0 1 0 1 0 0 9 0 1075.61 P01009 P01009 259 267 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.00040447 120.46 By MS/MS 6.2 2.79 1 1 1 1 1 5 50027000 50027000 0 0 9048 367 9416 38566;38567;38568;38569;38570 32294;32295;32296 32294 3 38870000 0 0 LSTHELTSLLEK PIAPVHLSSEDGGDRLSTHELTSLLEKELE GDRLSTHELTSLLEKELEQSQKEASDLLEQ R L S E K E 0 0 0 0 0 0 2 0 1 0 4 1 0 0 0 2 2 0 0 0 0 0 12 0 1369.7453 Q6WCQ1 Q6WCQ1 670 681 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 2.7424E-05 151.22 By matching By MS/MS 1.5 0.5 1 1 1 1 12913000 6644000 0 6269100 9049 1507 9417 38571;38572 32297 32297 1 6644000 0 1416700 LSTIALALGVER LRNEDVQLRLNSIKKLSTIALALGVERTRS IKKLSTIALALGVERTRSELLPFLTDTIYD K L S E R T 2 1 0 0 0 0 1 1 0 1 3 0 0 0 0 1 1 0 0 1 0 0 12 0 1241.7343 P30153;P30154 P30153 35 46 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 2 0.002734 96.015 By MS/MS 4 0 1 1 0 0 0 0 9050 712 9418 38573 32298 32298 1 0 0 0 LSTLLNHNNDTEEEER KVLNILEKNIQDGSKLSTLLNHNNDTEEEE STLLNHNNDTEEEERLWRDLIMERVTKSAD K L S E R L 0 1 3 1 0 0 4 0 1 0 3 0 0 0 0 1 2 0 0 0 0 0 16 0 1912.8763 Q6KC79 Q6KC79 1279 1294 NIPBL Nipped-B-like protein yes yes 2;3 2.1169E-35 207.12 By MS/MS 1.33 0.471 2 1 3 26202000 0 0 26202000 9051 1480 9419 38574;38575;38576 32299;32300 32300 2 0 0 5668300 LSTPAGVQVILR PSNIKRKNKHGWVRRLSTPAGVQVILRRML VRRLSTPAGVQVILRRMLKGRKSLSH____ R L S L R R 1 1 0 0 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 2 0 0 12 0 1252.7503 Q9BQ48 Q9BQ48 70 81 MRPL34 39S ribosomal protein L34, mitochondrial yes yes 2 0.00037423 128.36 By MS/MS By MS/MS 10 0 2 1 1 8430200 0 1651500 6778700 9052 1877 9420 38577;38578 32301;32302 32302 1 0 8355100 14826000 LSTVASTDILATVLEEMPPFPER NADVELQQRAVEYLRLSTVASTDILATVLE ILATVLEEMPPFPERESSILAKLKKKKGPS R L S E R E 2 1 0 1 0 0 3 0 0 1 3 0 1 1 3 2 3 0 0 2 0 0 23 0 2515.288 O94973 O94973 585 607 AP2A2 AP-2 complex subunit alpha-2 yes yes 2;3 9.2726E-11 104.94 By MS/MS 2 0 2 2 9668900 0 0 9668900 9053 306 9421 38579;38580 32303;32304 32304 2 0 0 2185000 LSVAAQEAAR EEAEKMKQVAEEAARLSVAAQEAARLRQLA EEAARLSVAAQEAARLRQLAEEDLAQQRAL R L S A R L 4 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q15149 Q15149 2420 2429 PLEC Plectin yes yes 2 3.9141E-30 204.62 By MS/MS 1 0 1 1 21600000 0 21600000 0 9054 1348 9422 38581 32305 32305 1 0 10558000 0 LSVDYGKK GGGTGSGFTSLLMERLSVDYGKKSKLEFSI TSLLMERLSVDYGKKSKLEFSIYPAPQVST R L S K K S 0 0 0 1 0 0 0 1 0 0 1 2 0 0 0 1 0 0 1 1 0 0 8 1 908.49673 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3 P68363 157 164 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2 0.0072135 102.71 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 75695000 0 47833000 27862000 9055 1077;1515;1883;1078 9423 38582;38583;38584;38585;38586 32306;32307;32308 32308 3 0 13232000 4268300 LSVEADINGLR ADDFRTKFETEQALRLSVEADINGLRRVLD QALRLSVEADINGLRRVLDELTLARADLEM R L S L R R 1 1 1 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 11 0 1185.6354 Q04695;CON__Q04695 Q04695 181 191 KRT17 Keratin, type I cytoskeletal 17 no no 2 9.8039E-05 141.2 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 64996000 0 10531000 54466000 + 9056 73 9424 38587;38588;38589;38590 32309;32310;32311 32309 3 0 2808300 7888000 LSVEADINGLRR ADDFRTKFETEQALRLSVEADINGLRRVLD ALRLSVEADINGLRRVLDELTLARADLEMQ R L S R R V 1 2 1 1 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 12 1 1341.7365 Q04695;CON__Q04695 Q04695 181 192 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 8.7478E-05 131.11 By MS/MS By MS/MS By MS/MS 3.42 1.55 3 2 3 4 4 2 6 190770000 8508300 38836000 143430000 + 9057 73 9425 38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602 32312;32313;32314;32315;32316;32317;32318 32315 7 8433300 10011000 21173000 LSVEDAVK QVASGFLVDPLNNQRLSVEDAVKVGLVGRE DPLNNQRLSVEDAVKVGLVGRELSEQLGQA R L S V K V 1 0 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 0 0 8 0 859.4651 P58107 P58107 1298 1305 EPPK1 Epiplakin yes yes 2 0.041319 75.109 By MS/MS 1.5 0.5 1 1 2 21840000 0 21840000 0 9058 958 9426 38603;38604 32319 32319 1 0 10651000 0 LSVEEAVAAGVVGGEIQEK QAATGFVIDPVRNLRLSVEEAVAAGVVGGE EAVAAGVVGGEIQEKLLSAERAVTGYTDPY R L S E K L 3 0 0 0 0 1 4 3 0 1 1 1 0 0 0 1 0 0 0 4 0 0 19 0 1883.984 P58107 P58107 2281 2299 EPPK1 Epiplakin yes no 2;3 1.2621E-40 211.82 By MS/MS By matching 1.6 0.49 2 3 4 1 50146000 0 44377000 5769100 9059 958 9427 38605;38606;38607;38608;38609 32320;32321;32322 32321 3 0 21453000 1303700 LSVISVEDPPQR EVIKPGDLGVDLTSKLSVISVEDPPQRTAG TSKLSVISVEDPPQRTAGVKVETTEDLVAK K L S Q R T 0 1 0 1 0 1 1 0 0 1 1 0 0 0 2 2 0 0 0 2 0 0 12 0 1338.7143 P38117 P38117 222 233 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.034539 77.192 By MS/MS 6 0 1 1 3105100 0 0 3105100 9060 770 9428 38610 32323 32323 1 0 0 464550 LSVLGAITSVQQR DEFGTASNIKSRVNRLSVLGAITSVQQRLK NRLSVLGAITSVQQRLKLYNKVPPNGLVVY R L S Q R L 1 1 0 0 0 2 0 1 0 1 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1370.7882 P62495 P62495 69 81 ETF1 Eukaryotic peptide chain release factor subunit 1 yes yes 2 9.4497E-25 201.33 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 29488000 0 14303000 15185000 9061 1028 9429 38611;38612;38613 32324;32325 32325 2 0 3686900 2263100 LSVLNSEDELNR DSSRREQMADMAKIKLSVLNSEDELNRWDS KIKLSVLNSEDELNRWDSQMKQDAGRFDVS K L S N R W 0 1 2 1 0 0 2 0 0 0 3 0 0 0 0 2 0 0 0 1 0 0 12 0 1387.6943 Q96T58 Q96T58 1328 1339 SPEN Msx2-interacting protein yes yes 2 0.0052651 93.096 By MS/MS 1 0 1 1 0 0 0 0 9062 1839 9430 38614 32326 32326 1 0 0 0 LSVQSNPSPQLR EEEVKASQLSVQQNKLSVQSNPSPQLRSVM QNKLSVQSNPSPQLRSVMKVESSENVPSPT K L S L R S 0 1 1 0 0 2 0 0 0 0 2 0 0 0 2 3 0 0 0 1 0 0 12 0 1324.7099 O75152 O75152 125 136 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 0.00011614 138.66 By MS/MS 2 0 1 1 6270900 0 0 6270900 9063 244 9431 38615 32327 32327 1 0 0 1417100 LSVTWPEGDELLPNEVRPAGTPIGALR VKKYVEDEMARLPDRLSVTWPEGDELLPNE PNEVRPAGTPIGALRIEILNKKGEAMQKLP R L S L R I 2 2 1 1 0 0 3 3 0 1 4 0 0 0 4 1 2 1 0 2 0 0 27 1 2886.524 A6NHR9 A6NHR9 693 719 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 9.8122E-07 65.213 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 31941000 0 1524600 30417000 9064 15 9432 38616;38617;38618 32328;32329 32329 2 0 745210 6599800 LSVYAALQR RSSIAGLLLKATNEKLSVYAALQRQLLSPG KATNEKLSVYAALQRQLLSPGTALILLEAQ K L S Q R Q 2 1 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1019.5764 Q15149 Q15149 2847 2855 PLEC Plectin yes yes 2 1.0476E-06 127.12 By MS/MS By MS/MS 1 0 2 1 1 7946400 0 7946400 0 9065 1348 9433 38619;38620 32330;32331 32331 2 0 3884100 0 LSVYQAMK TSCIAGVFVDATKERLSVYQAMKKGIIRPG VDATKERLSVYQAMKKGIIRPGTAFELLEA R L S M K K 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 1 1 0 0 8 0 938.48954 Q15149 Q15149 4084 4091 PLEC Plectin yes yes 2 0.007276 97.068 By matching By MS/MS 1.33 0.471 2 1 1 2 14685000 3348800 11336000 0 9066 1348 9434 38621;38622;38623 32332 32332 1 3348800 5476600 0 LSWHLWEVLR LLEPRSITADPLDYRLSWHLWEVLRALNYT PLDYRLSWHLWEVLRALNYTHLSAQCEGVL R L S L R A 0 1 0 0 0 0 1 0 1 0 3 0 0 0 0 1 0 2 0 1 0 0 10 0 1337.7244 P52948 P52948 1524 1533 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 0.00011148 115.82 By MS/MS 2 0 1 1 4393500 0 0 4393500 9067 916 9435 38624 32333 32333 1 0 0 992860 LSWVENYWPDDALLAKPK TRMSSFVEPPDIVKKLSWVENYWPDDALLA VENYWPDDALLAKPKVTKYCLICVKDSYTD K L S P K V 2 0 1 2 0 0 1 0 0 0 3 2 0 0 2 1 0 2 1 1 0 0 18 1 2144.0942 O75151 O75151 215 232 PHF2 Lysine-specific demethylase PHF2 yes yes 3 0.064922 31.41 By MS/MS 1.5 0.5 1 1 2 7093500 0 0 7093500 9068 243 9436 38625;38626 32334 32334 1 0 0 1583100 LSYTQLLR PSEVRSYVDPSTDERLSYTQLLRRCRRDDG DPSTDERLSYTQLLRRCRRDDGTGQLLLPL R L S L R R 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 1 0 0 0 8 0 992.56548 Q15149 Q15149 3992 3999 PLEC Plectin yes yes 2 0.0001739 141.78 By MS/MS By MS/MS 1 0 2 1 1 25045000 0 12673000 12373000 9069 1348 9437 38627;38628 32335;32336 32335 2 0 6194300 2665900 LTADINWAVNGISK YPAECRGRRSTYRGKLTADINWAVNGISKG KLTADINWAVNGISKGIIKQFLGYVPIMVK K L T S K G 2 0 2 1 0 0 0 1 0 2 1 1 0 0 0 1 1 1 0 1 0 0 14 0 1500.7936 Q9H9Y6 Q9H9Y6 114 127 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 0.040339 66.435 By MS/MS 5 0 1 1 3841400 0 3841400 0 9070 2000 9438 38629 32337 32337 1 0 990200 0 LTADLSAETLQAR AREKGRVTLKGKPIRLTADLSAETLQARRE IRLTADLSAETLQARREWGPIFNILKEKNF R L T A R R 3 1 0 1 0 1 1 0 0 0 3 0 0 0 0 1 2 0 0 0 0 0 13 0 1387.7307 Q9UN81 Q9UN81 249 261 L1RE1 LINE-1 retrotransposable element ORF1 protein yes yes 2 3.541E-11 175.65 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 33655000 0 21702000 11953000 9071 2202 9439 38630;38631;38632 32338;32339 32338 2 0 5933900 1667200 LTADPDSEIATTSLR GIRNPDHSRALIKEKLTADPDSEIATTSLR LTADPDSEIATTSLRVSLMCPLGKMRLTIP K L T L R V 2 1 0 2 0 0 1 0 0 1 2 0 0 0 1 2 3 0 0 0 0 0 15 0 1588.7944 O75928;O75925 O75928 327 341 PIAS2;PIAS1 E3 SUMO-protein ligase PIAS2;E3 SUMO-protein ligase PIAS1 yes no 2 3.185E-22 129.34 By MS/MS 3 0 1 1 0 0 0 0 9072 289 9440 38633 32340 32340 1 0 0 0 LTADPGGSSETSSQVLENHTKPK LKSATAKGKKPSKERLTADPGGSSETSSQV SETSSQVLENHTKPKTSKGTKQEETFAKGT R L T P K T 1 0 1 1 0 1 2 2 1 0 2 2 0 0 2 4 3 0 0 1 0 0 23 1 2382.1663 Q01831 Q01831 339 361 XPC DNA repair protein complementing XP-C cells yes yes 3;4 9.24E-10 94.234 By MS/MS By MS/MS 2.33 0.943 1 3 1 1 1 5 47395000 0 7941800 39454000 9073 1140 9441 38634;38635;38636;38637;38638;38639 32341;32342;32343 32342 3 0 3576300 8366400 LTAEAIQTPLK EEAATADLDITEINKLTAEAIQTPLKSAKT EINKLTAEAIQTPLKSAKTRKVIQVDEMIV K L T L K S 2 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 2 0 0 0 0 0 11 0 1183.6812 Q53HL2 Q53HL2 99 109 CDCA8 Borealin yes yes 2 5.247E-11 126.55 By MS/MS 6 0 1 1 0 0 0 0 9074 1429 9442 38640 32344 32344 1 0 0 0 LTAEDLFEAR IRQQGLASYDYVRRRLTAEDLFEARIISLE YVRRRLTAEDLFEARIISLETYNLLREGTR R L T A R I 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 10 0 1163.5823 Q15149 Q15149 3784 3793 PLEC Plectin yes yes 2 0.00021066 141.48 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 37433000 0 7196300 30237000 9075 1348 9443 38641;38642;38643;38644 32345;32346 32345 2 0 3517500 6604200 LTAEIWK LNDNVAALLHQSTDRLTAEIWKDVEGIVGL LLHQSTDRLTAEIWKDVEGIVGLEQVSSLG R L T W K D 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 1 1 0 0 0 0 7 0 859.48035 Q7Z406 Q7Z406 633 639 MYH14 Myosin-14 yes yes 2 0.030216 92.467 By MS/MS 1 0 1 1 3852800 0 3852800 0 9076 1531 9444 38645 32347 32347 1 0 1883200 0 LTAELIEQAAQYTNAVR ______________________________ AELIEQAAQYTNAVRDRELDLRGYKIPVIE K L T V R D 4 1 1 0 0 2 2 0 0 1 2 0 0 0 0 0 2 0 1 1 0 0 17 0 1889.9847 P09661 P09661 4 20 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2;3 9.4652E-152 282.05 By MS/MS By MS/MS 6.5 0.5 3 3 2 4 104010000 0 5500900 98507000 9077 491 9445 38646;38647;38648;38649;38650;38651 32348;32349;32350;32351;32352 32350 5 0 2793200 16462000 LTAIDILTTCAADIQR KKPVIVFVPSRKQTRLTAIDILTTCAADIQ TAIDILTTCAADIQRQRFLHCTEKDLIPYL R L T Q R Q 3 1 0 2 1 1 0 0 0 3 2 0 0 0 0 0 3 0 0 0 0 0 16 0 1773.9295 O75643 O75643 1571 1586 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 2.1011E-47 226.73 By MS/MS By MS/MS 1 0 4 2 2 20408000 0 992550 19415000 9078 277 9446 38652;38653;38654;38655 32353;32354;32355;32356 32355 4 0 485140 4183300 LTAIIEEAEEAPGAR EFGSGTLDLPALTRRLTAIIEEAEEAPGAR LTAIIEEAEEAPGARPQLQDAWRGPREPGP R L T A R P 4 1 0 0 0 0 4 1 0 2 1 0 0 0 1 0 1 0 0 0 0 0 15 0 1568.8046 P58107 P58107 2571 2585 EPPK1 Epiplakin yes no 2 7.3055E-05 156.51 By MS/MS 1.5 0.5 1 1 2 6014600 0 0 6014600 9079 958 9447 38656;38657 32357 32357 1 0 0 1316600 LTAIIEEAEEAPGARPQLQDAWR EFGSGTLDLPALTRRLTAIIEEAEEAPGAR EEAPGARPQLQDAWRGPREPGPAGRGDGDS R L T W R G 5 2 0 1 0 2 4 1 0 2 2 0 0 0 2 0 1 1 0 0 0 0 23 1 2563.3031 P58107 P58107 2571 2593 EPPK1 Epiplakin yes no 3 4.9352E-29 174.81 By MS/MS 1.5 0.5 1 1 2 44579000 0 0 44579000 9080 958 9448 38658;38659 32358 32358 1 0 0 9747300 LTAQFVAR ADPPSISAFDLDVVKLTAQFVARNGRQFLT FDLDVVKLTAQFVARNGRQFLTQLMQKEQR K L T A R N 2 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 8 0 904.51305 Q15459 Q15459 169 176 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.00020546 139.31 By matching By MS/MS By matching 2.25 1.09 1 2 1 2 1 1 27134000 13945000 10887000 2301500 9081 1369 9449 38660;38661;38662;38663 32359 32359 1 16371000 4902400 375910 LTAQVASLTSELTTLNATIQQQDQELAGLK AKEELEQASQAHGARLTAQVASLTSELTTL NATIQQQDQELAGLKQQAKEKQAQLAQTLQ R L T L K Q 4 0 1 1 0 5 2 1 0 1 6 1 0 0 0 2 5 0 0 1 0 0 30 0 3184.6827 Q14980 Q14980 496 525 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3;4 3.0949E-85 212.97 By MS/MS 1 0 2 2 54130000 0 0 54130000 9082 1327 9450 38664;38665 32360;32361 32360 2 0 0 11663000 LTAQVEQLEVFQR KVLEERQRFQEERQKLTAQVEQLEVFQREQ QKLTAQVEQLEVFQREQTKQVEELSKKLAD K L T Q R E 1 1 0 0 0 3 2 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 13 0 1559.8308 Q14980 Q14980 1533 1545 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00023553 147.28 By MS/MS 1 0 1 1 12124000 0 0 12124000 9083 1327 9451 38666 32362 32362 1 0 0 2612200 LTAYAMTIPFVR DKKISPKRDKGLVEKLTAYAMTIPFVRQQV VEKLTAYAMTIPFVRQQVYKKVEEKVRKQT K L T V R Q 2 1 0 0 0 0 0 0 0 1 1 0 1 1 1 0 2 0 1 1 0 0 12 0 1381.7428 P40939 P40939 268 279 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2 6.5845E-05 142.98 By matching By MS/MS By MS/MS 3 0 3 1 1 1 22649000 1029900 6565300 15053000 9084 789 9452 38667;38668;38669 32363;32364 32364 2 1188300 2798800 2919600 LTDCVVMR TTEESLRNYYEQWGKLTDCVVMRDPASKRS YYEQWGKLTDCVVMRDPASKRSRGFGFVTF K L T M R D 0 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 2 0 0 8 0 992.47832 P22626 P22626 47 54 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 0.00012804 145.04 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 171360000 0 20347000 151020000 9085 632 9453 38670;38671;38672;38673;38674;38675 32365;32366;32367 32367 3 0 6757500 22231000 LTDCVVMRDPASK TTEESLRNYYEQWGKLTDCVVMRDPASKRS GKLTDCVVMRDPASKRSRGFGFVTFSSMAE K L T S K R 1 1 0 2 1 0 0 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 13 1 1490.7221 P22626 P22626 47 59 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 3.7056E-25 206.36 By MS/MS By MS/MS 5.5 0.5 2 2 1 3 24366000 0 5337900 19029000 9086 632 9454 38676;38677;38678;38679 32368;32369;32370;32371 32368 4 0 1847800 2757100 LTDCVVMRDPASKR TTEESLRNYYEQWGKLTDCVVMRDPASKRS KLTDCVVMRDPASKRSRGFGFVTFSSMAEV K L T K R S 1 2 0 2 1 0 0 0 0 0 1 1 1 0 1 1 1 0 0 2 0 0 14 2 1646.8232 P22626 P22626 47 60 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 4 0.0023583 81.619 By MS/MS 6 0 1 1 7058900 0 7058900 0 9087 632 9455 38680 32372 32372 1 0 2443500 0 LTDEQVALVR YWRTVQDPMTGRDLRLTDEQVALVRRLQSG GRDLRLTDEQVALVRRLQSGQFGDVGFNPY R L T V R R 1 1 0 1 0 1 1 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 10 0 1142.6295 Q14137 Q14137 196 205 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 2.3735E-16 178.27 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 110130000 0 34715000 75415000 9088 1283 9456 38681;38682;38683;38684 32373;32374;32375 32373 3 0 15633000 15401000 LTDISVTDPEK ICGTLHSVDQYLNIKLTDISVTDPEKYPHM LNIKLTDISVTDPEKYPHMLSVKNCFIRGS K L T E K Y 0 0 0 2 0 0 1 0 0 1 1 1 0 0 1 1 2 0 0 1 0 0 11 0 1216.6187 Q9Y333 Q9Y333 40 50 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.00099547 114.4 By MS/MS By MS/MS 10 0 2 1 1 14685000 0 1778600 12906000 9089 2258 9457 38685;38686 32376;32377 32377 2 0 8998400 28227000 LTDQVMQNPR SDSVEAAKNASNTEKLTDQVMQNPRVLAAL SNTEKLTDQVMQNPRVLAALQERLDNVPHT K L T P R V 0 1 1 1 0 2 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 10 0 1200.5921 Q99733 Q99733 27 36 NAP1L4 Nucleosome assembly protein 1-like 4 yes yes 2 6.3367E-07 156.51 By MS/MS By MS/MS 4 0 2 1 1 14487000 0 3235100 11252000 9090 1862 9458 38687;38688 32378;32379 32379 2 0 1073600 1837800 LTEADYLSSHLTEGPHR DGLNRVLGLGLGCLRLTEADYLSSHLTEGP EADYLSSHLTEGPHRVVAHLYARQLTLEQL R L T H R V 1 1 0 1 0 0 2 1 2 0 3 0 0 0 1 2 2 0 1 0 0 0 17 0 1924.9279 Q9BRJ7 Q9BRJ7 91 107 NUDT16L1 Protein syndesmos yes yes 2;4 6.5621E-37 212.9 By MS/MS 7 0 2 2 45229000 0 0 45229000 9091 1890 9459 38689;38690 32380;32381 32381 2 0 0 8025700 LTEDKADVQSIIGLQR EFAQDVGRMFKQFNKLTEDKADVQSIIGLQ TEDKADVQSIIGLQRFFETRMNEAFGDTKF K L T Q R F 1 1 0 2 0 2 1 1 0 2 2 1 0 0 0 1 1 0 0 1 0 0 16 1 1784.9632 Q13263 Q13263 775 790 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 9.0279E-108 263.19 By MS/MS By MS/MS 2.62 0.696 4 3 1 4 4 86569000 0 36534000 50035000 9092 1235 9460 38691;38692;38693;38694;38695;38696;38697;38698 32382;32383;32384;32385;32386;32387 32386 6 0 15992000 10750000 LTEELKEQMK WDEKAVDKLKEKKERLTEELKEQMKAKRKE EKKERLTEELKEQMKAKRKEAELRQVQSQA R L T M K A 0 0 0 0 0 1 3 0 0 0 2 2 1 0 0 0 1 0 0 0 0 0 10 1 1247.6431 Q14683 Q14683 681 690 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 2.1111E-27 159.58 By MS/MS By MS/MS 1.67 0.624 5 6 1 7 5 121970000 0 20864000 101100000 9093 1312 9461;9462 38699;38700;38701;38702;38703;38704;38705;38706;38707;38708;38709;38710 32388;32389;32390;32391;32392;32393;32394;32395 32393 597 8 0 9683300 22457000 LTEGCSFR GCSTVLCQPTGGKARLTEGCSFRRKQH___ PTGGKARLTEGCSFRRKQH___________ R L T F R R 0 1 0 0 1 0 1 1 0 0 1 0 0 1 0 1 1 0 0 0 0 0 8 0 968.43857 P42677;Q71UM5 P42677 73 80 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 0.0017273 111.82 By MS/MS 10 0 1 1 4800100 0 4800100 0 9094 804;1516 9463 38711 32396 32396 1 0 24284000 0 LTELGTVDPK TLQEKKEKIQTGLKKLTELGTVDPKNKYQE TGLKKLTELGTVDPKNKYQELINDIARDIR K L T P K N 0 0 0 1 0 0 1 1 0 0 2 1 0 0 1 0 2 0 0 1 0 0 10 0 1071.5812 P46940 P46940 1466 1475 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.020459 82.749 By MS/MS 2 0 1 1 20746000 0 20746000 0 9095 835 9464 38712 32397 32397 1 0 9342400 0 LTELLVK QEGRASGTVYSGEEKLTELLVKAYGDFAWS TVYSGEEKLTELLVKAYGDFAWSNPLHPDI K L T V K A 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 7 0 814.51641 O95470 O95470 156 162 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 2 0.024343 97.473 By MS/MS By MS/MS 4 0 2 1 1 10899000 0 3970100 6928900 9096 328 9465 38713;38714 32398;32399 32398 2 0 1317500 1131700 LTEMETLQSQLMAEK ELVKVREKQLAAENRLTEMETLQSQLMAEK LTEMETLQSQLMAEKLQLQEQLQAETELCA R L T E K L 1 0 0 0 0 2 3 0 0 0 3 1 2 0 0 1 2 0 0 0 0 0 15 0 1750.8481 P35579 P35579 868 882 MYH9 Myosin-9 yes yes 2;3 3.2731E-197 304.57 By matching By MS/MS By MS/MS 1.11 0.314 8 1 1 7 1 382660000 1535800 330600000 50522000 9097 752 9466;9467;9468 38715;38716;38717;38718;38719;38720;38721;38722;38723 32400;32401;32402;32403;32404;32405;32406;32407;32408;32409;32410;32411 32408 354;355 12 1535800 161470000 10886000 LTEQLAGPLR LSCFVFQENSSEMPKLTEQLAGPLRQMQEC SEMPKLTEQLAGPLRQMQECAKRIAKVSAE K L T L R Q 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 1 0 0 0 0 0 10 0 1096.6241 P42285 P42285 924 933 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 5.3298E-05 149.65 By MS/MS 2 0 1 1 7746600 0 7746600 0 9098 800 9469 38724 32412 32412 1 0 3488400 0 LTESVDVLMPNVGEIVGGSMR EIKSFYMQRCPEDSRLTESVDVLMPNVGEI VLMPNVGEIVGGSMRIFDSEEILAGYKREG R L T M R I 0 1 1 1 0 0 2 3 0 1 2 0 2 0 1 2 1 0 0 4 0 0 21 0 2202.1024 O43776 O43776 458 478 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 2.5105E-17 165.49 By MS/MS 3 0 1 1 9955400 0 0 9955400 9099 211 9470 38725 32413 32413 1 0 0 1930900 LTEVKDELEPLLELVEQGIIPPGK ESPELLELIEDLKVKLTEVKDELEPLLELV PLLELVEQGIIPPGKGSQYLRTKYNLYLNY K L T G K G 0 0 0 1 0 1 5 2 0 2 5 2 0 0 3 0 1 0 0 2 0 0 24 1 2658.4731 Q9NQZ2 Q9NQZ2 237 260 UTP3 Something about silencing protein 10 yes yes 3 0.0012221 51.645 By MS/MS 3 0 1 1 2404100 0 0 2404100 9100 2037 9471 38726 32414 32414 1 0 0 466280 LTEVPVEPVLTVHPESK HLLPERKDFPVESVKLTEVPVEPVLTVHPE EVPVEPVLTVHPESKSKTKTRSRSRGRARN K L T S K S 0 0 0 0 0 0 3 0 1 0 2 1 0 0 3 1 2 0 0 4 0 0 17 0 1873.0197 Q9H307 Q9H307 537 553 PNN Pinin yes yes 3 4.8027E-07 152.94 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 124920000 0 24857000 100070000 9101 1978 9472 38727;38728;38729;38730 32415;32416;32417 32415 3 0 11103000 22165000 LTEVQDDKEEEEEENPLLVPLEEK GVRGHQGLRDQKRMRLTEVQDDKEEEEEEN EEEEENPLLVPLEEKAVLQEEQANLWFSKG R L T E K A 0 0 1 2 0 1 9 0 0 0 4 2 0 0 2 0 1 0 0 2 0 0 24 1 2853.3655 Q8IY81 Q8IY81 495 518 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 3 2.3122E-15 114.57 By MS/MS 2 0 1 1 14748000 0 0 14748000 9102 1590 9473 38731 32418 32418 1 0 0 3332700 LTFDSSFSPNTGKK GTEITVEDQLARGLKLTFDSSFSPNTGKKN KLTFDSSFSPNTGKKNAKIKTGYKREHINL K L T K K N 0 0 1 1 0 0 0 1 0 0 1 2 0 2 1 3 2 0 0 0 0 0 14 1 1527.7569 P21796 P21796 97 110 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 0.0015878 110.84 By MS/MS 6 0 1 1 7931800 0 0 7931800 9103 625 9474 38732 32419 32419 1 0 0 1186700 LTFLYLANDVIQNSK SVWHRELRKAKSNRKLTFLYLANDVIQNSK LTFLYLANDVIQNSKRKGPEFTREFESVLV K L T S K R 1 0 2 1 0 1 0 0 0 1 3 1 0 1 0 1 1 0 1 1 0 0 15 0 1737.9301 Q9NQG5 Q9NQG5 57 71 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B no no 2 2.9572E-07 165.66 By MS/MS 6 0 1 1 11125000 0 0 11125000 9104 2033 9475 38733 32420 32420 1 0 0 1664400 LTFMDLELK GALFTNDKFQVSTNKLTFMDLELKLKDKNT QVSTNKLTFMDLELKLKDKNTLFTRILNGQ K L T L K L 0 0 0 1 0 0 1 0 0 0 3 1 1 1 0 0 1 0 0 0 0 0 9 0 1108.5838 A6NHR9 A6NHR9 526 534 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.013257 86.67 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 14191000 0 2026000 12165000 9105 15 9476 38734;38735;38736 32421;32422 32422 2 0 990260 2636700 LTFPEQSVPGALQFR ASLESWWQNPVPGLRLTFPEQSVPGALQFR LTFPEQSVPGALQFRLTSVDLEDWMDVSLV R L T F R L 1 1 0 0 0 2 1 1 0 0 2 0 0 2 2 1 1 0 0 1 0 0 15 0 1688.8886 Q9Y6K5 Q9Y6K5 118 132 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 3.2183E-08 173.64 By MS/MS By MS/MS 2 0 2 1 1 14071000 0 7834900 6236000 9106 2314 9477 38737;38738 32423;32424 32423 2 0 3528100 1409200 LTGADGTPPGFLLK YTTTRLGIYTVLFERLTGADGTPPGFLLKA RLTGADGTPPGFLLKAVIGMTAGATGAFVG R L T L K A 1 0 0 1 0 0 0 3 0 0 3 1 0 1 2 0 2 0 0 0 0 0 14 0 1385.7555 Q02978 Q02978 109 122 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 2 0.0098194 81.335 By MS/MS By MS/MS 6 0 2 1 1 9999600 0 2093200 7906400 9107 1151 9478 38739;38740 32425;32426 32426 2 0 724580 1182900 LTGEDVFGITVPLITSTTGAK DQLGNIMSGYEFINKLTGEDVFGITVPLIT FGITVPLITSTTGAKLGKSAGNAVWLNRDK K L T A K L 1 0 0 1 0 0 1 3 0 2 2 1 0 1 1 1 5 0 0 2 0 0 21 0 2119.1413 Q9Y2Z4 Q9Y2Z4 261 281 YARS2 Tyrosine--tRNA ligase, mitochondrial yes yes 2 0.0012816 67.93 By MS/MS 5 0 1 1 2635300 0 2635300 0 9108 2255 9479 38741 32427 32427 1 0 679290 0 LTGMERDLVAIEAKLSDLQK DLGNDLAGVMALQRKLTGMERDLVAIEAKL RDLVAIEAKLSDLQKEAEKLESEHPDQAQA K L T Q K E 2 1 0 2 0 1 2 1 0 1 4 2 1 0 0 1 1 0 0 1 0 0 20 2 2229.2039 Q01082 Q01082 998 1017 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 0.026629 41.86 By MS/MS 7 2.16 1 1 1 3 668820000 0 0 668820000 9109 1128 9480 38742;38743;38744 32428;32429;32430 32430 3 0 0 151750000 LTGRDPNDVRPIQAR KAKESLKNVDENIRKLTGRDPNDVRPIQAR LTGRDPNDVRPIQARLLALSGPGGGRGRGS K L T A R L 1 3 1 2 0 1 0 1 0 1 1 0 0 0 2 0 1 0 0 1 0 0 15 2 1706.9176 Q9H307 Q9H307 29 43 PNN Pinin yes yes 4 0.0016729 79.771 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 4 2 41740000 0 23220000 18520000 9110 1978 9481 38745;38746;38747;38748;38749;38750 32431;32432;32433 32433 2 0 10194000 4104800 LTGSVLEDAWK NPMDDNLICAVKLLKLTGSVLEDAWKEKGK KLLKLTGSVLEDAWKEKGKMDMEEIIQRIE K L T W K E 1 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 1 1 0 1 0 0 11 0 1217.6292 Q9H074 Q9H074 325 335 PAIP1 Polyadenylate-binding protein-interacting protein 1 yes yes 2 0.00080981 116.3 By MS/MS 4.6 1.02 1 1 2 1 5 13566000 0 13566000 0 9111 1957 9482 38751;38752;38753;38754;38755 32434;32435 32435 2 0 4153900 0 LTGVFAPR HLKRVAAPKHWMLDKLTGVFAPRPSTGPHK KHWMLDKLTGVFAPRPSTGPHKLRECLPLI K L T P R P 1 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 1 0 0 1 0 0 8 0 859.49159 P62701;Q8TD47;P22090 P62701 23 30 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.0012299 118.69 By matching By MS/MS By MS/MS 7.33 1.33 3 3 1 1 1 2 2 5 308310000 26394000 50466000 231450000 9112 1029 9483 38756;38757;38758;38759;38760;38761;38762;38763;38764 32436;32437;32438;32439;32440 32438 5 44755000 23028000 61925000 LTGVPAALDLITSGR LGLLPGARGTQLLPRLTGVPAALDLITSGR LTGVPAALDLITSGRRILADEALKLGILDK R L T G R R 2 1 0 1 0 0 0 2 0 1 3 0 0 0 1 1 2 0 0 1 0 0 15 0 1482.8406 Q08426 Q08426 142 156 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.0040608 85.522 By MS/MS 3 0 1 1 3746400 0 3746400 0 9113 1184 9484 38765 32441 32441 1 0 1597100 0 LTHLIDHLKEQEK EDLVEKNERSANVERLTHLIDHLKEQEKSY ERLTHLIDHLKEQEKSYMKFLKKILARDPQ R L T E K S 0 0 0 1 0 1 2 0 2 1 3 2 0 0 0 0 1 0 0 0 0 0 13 1 1602.873 Q15154 Q15154 239 251 PCM1 Pericentriolar material 1 protein yes yes 4 0.0034702 79.089 By MS/MS 1.5 0.5 1 1 2 12884000 0 0 12884000 9114 1349 9485 38766;38767 32442 32442 1 0 0 2795600 LTIAEER GNKPWISLPRGKGIRLTIAEERDKRLAAKQ LPRGKGIRLTIAEERDKRLAAKQSSG____ R L T E R D 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 7 0 830.44978 P62701;Q8TD47 P62701 246 252 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 1;2 0.00023486 154.09 By MS/MS By MS/MS 6.5 1.96 1 1 3 3 1 1 7 3 244830000 0 90467000 154370000 9115 1029 9486 38768;38769;38770;38771;38772;38773;38774;38775;38776;38777 32443;32444;32445;32446 32443 4 0 49296000 26352000 LTIAEERDKR GNKPWISLPRGKGIRLTIAEERDKRLAAKQ GKGIRLTIAEERDKRLAAKQSSG_______ R L T K R L 1 2 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 2 1229.6728 P62701;Q8TD47 P62701 246 255 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 3 0.047211 57.347 By MS/MS By matching 6.33 0.471 2 1 1 2 1849100 0 1081200 767890 9116 1029 9487 38778;38779;38780 32447 32447 1 0 374290 122210 LTIGSNLSIR VFKKIERHSIHWPCRLTIGSNLSIRIAAYK HWPCRLTIGSNLSIRIAAYKSILQERVKKT R L T I R I 0 1 1 0 0 0 0 1 0 2 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1072.6241 P13010 P13010 251 260 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0015312 108.81 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 58693000 0 51182000 7510400 9117 542 9488 38781;38782;38783;38784 32448;32449;32450 32449 2 0 22216000 1697200 LTIQANLNR ANGRCLLAALTMDNRLTIQANLNRLQWVQL LTMDNRLTIQANLNRLQWVQLVDLTEIYGE R L T N R L 1 1 2 0 0 1 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 1041.5931 Q9UKN8 Q9UKN8 191 199 GTF3C4 General transcription factor 3C polypeptide 4 yes yes 2 0.0028352 102.3 By matching By MS/MS 2.5 0.5 1 1 1 1 9193300 0 1427300 7766000 9118 2182 9489 38785;38786 32451 32451 1 0 642730 1506200 LTIYTTLVGLLNAR ILRLLCTVARLLPEKLTIYTTLVGLLNARN KLTIYTTLVGLLNARNYNFGGEFVEAMIRQ K L T A R N 1 1 1 0 0 0 0 1 0 1 4 0 0 0 0 0 3 0 1 1 0 0 14 0 1546.9083 Q09161 Q09161 83 96 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.0005999 117.67 By matching By MS/MS 2.8 1.33 1 1 2 1 3 2 5361000 1021900 0 4339100 9119 1189 9490 38787;38788;38789;38790;38791 32452 32452 1 1158400 0 660770 LTKEEILENWNMFVGSQATNYGEDLTK ARHLVYESDKNKDEKLTKEEILENWNMFVG FVGSQATNYGEDLTKNHDEL__________ K L T T K N 1 0 3 1 0 1 4 2 0 1 3 2 1 1 0 1 3 1 1 1 0 0 27 1 3129.4965 Q15293 Q15293 300 326 RCN1 Reticulocalbin-1 yes yes 3 1.4674E-15 98.967 By MS/MS 5 0 1 1 3841700 0 0 3841700 9120 1354 9491 38792 32453 32453 1 0 0 535850 LTLDTIFVPNTGK GTEISWENKLAEGLKLTLDTIFVPNTGKKS LKLTLDTIFVPNTGKKSGKLKASYKRDCFS K L T G K K 0 0 1 1 0 0 0 1 0 1 2 1 0 1 1 0 3 0 0 1 0 0 13 0 1417.7817 Q9Y277 Q9Y277 97 109 VDAC3 Voltage-dependent anion-selective channel protein 3 yes yes 2 0.0035555 104.43 By matching By MS/MS 6 0 2 1 1 35254000 0 1621100 33633000 9121 2236 9492 38793;38794 32454 32454 1 0 561150 5031800 LTLEQGQQLVAEGHPGASQASAR TALRGEMSGRLGPLKLTLEQGQQLVAEGHP LVAEGHPGASQASARAAELQAQWERLEALA K L T A R A 4 1 0 0 0 4 2 3 1 0 3 0 0 0 1 2 1 0 0 1 0 0 23 0 2347.188 O15020 O15020 699 721 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 1.1335E-19 121.33 By MS/MS By MS/MS 1 0 2 1 1 25939000 0 11096000 14843000 9122 160 9493 38795;38796 32455;32456 32456 2 0 5423600 3198100 LTLHGLQQYYVK FMQDPMEIFVDDETKLTLHGLQQYYVKLKD ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD K L T V K L 0 0 0 0 0 2 0 1 1 0 3 1 0 0 0 0 1 0 2 1 0 0 12 0 1461.798 Q13838;O00148 Q13838 257 268 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2;3 4.376E-06 151.98 By MS/MS By MS/MS By MS/MS 4.5 1.28 1 1 2 5 1 1 3 6 299050000 14735000 37677000 246640000 9123 1271 9494 38797;38798;38799;38800;38801;38802;38803;38804;38805;38806 32457;32458;32459;32460;32461;32462;32463 32457 7 11805000 9825000 36379000 LTLLQVASR QNQQLLRENEIIKQKLTLLQVASRQKHLPK EIIKQKLTLLQVASRQKHLPKDTLLSPDSS K L T S R Q 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 9 0 999.60768 O95239 O95239 994 1002 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 2.6029E-24 195.06 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 26999000 0 6605100 20394000 9124 314 9495 38807;38808;38809;38810 32464;32465;32466;32467 32467 4 0 3044700 4545700 LTLPHSIR MVVLWKIPSKELRVRLTLPHSIRSDSEDIC SKELRVRLTLPHSIRSDSEDICLFTKDEPN R L T I R S 0 1 0 0 0 0 0 0 1 1 2 0 0 0 1 1 1 0 0 0 0 0 8 0 935.55525 O76021 O76021 82 89 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.00020546 139.31 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 1 4 66399000 0 38513000 27887000 9125 295 9496 38811;38812;38813;38814;38815 32468;32469;32470 32469 3 0 12781000 5598400 LTLSALLDGK LIGLGYTQTLKPGIKLTLSALLDGKNVNAG KPGIKLTLSALLDGKNVNAGGHKLGLGLEF K L T G K N 1 0 0 1 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 0 0 0 10 0 1029.607 P21796 P21796 257 266 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 0.00039478 125.82 By MS/MS By MS/MS By MS/MS 6.33 0.471 4 2 1 1 4 74900000 3861600 3820900 67218000 9126 625 9497 38816;38817;38818;38819;38820;38821 32471;32472;32473;32474 32473 4 5141800 1322700 10104000 LTLSALVDGK LIGVGYTQTLRPGVKLTLSALVDGKSINAG RPGVKLTLSALVDGKSINAGGHKVGLALEL K L T G K S 1 0 0 1 0 0 0 1 0 0 3 1 0 0 0 1 1 0 0 1 0 0 10 0 1015.5914 P45880 P45880 268 277 VDAC2 Voltage-dependent anion-selective channel protein 2 yes yes 2 0.002854 104.2 By MS/MS By MS/MS By MS/MS 7.6 1.96 3 2 2 1 2 54249000 5343900 2399600 46505000 9127 819 9498 38822;38823;38824;38825;38826 32475;32476;32477;32478 32475 4 7234000 830670 11776000 LTLYDIAHTPGVAADLSHIETK QPLSLLLKNSPLVSRLTLYDIAHTPGVAAD HTPGVAADLSHIETKAAVKGYLGPEQLPDC R L T T K A 3 0 0 2 0 0 1 1 2 2 3 1 0 0 1 1 3 0 1 1 0 0 22 0 2364.2325 P40926 P40926 53 74 MDH2 Malate dehydrogenase, mitochondrial yes yes 4 0.0073678 42.904 By MS/MS 6 0 1 1 3588100 0 3588100 0 9128 786 9499 38827 32479 32479 1 0 1242100 0 LTMQNLNDR GVLTASDGLLAGNEKLTMQNLNDRLASYLD LAGNEKLTMQNLNDRLASYLDKVRALEAAN K L T D R L 0 1 2 1 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 9 0 1103.5393 CON__P08727;P08727 CON__P08727 82 90 KRT19 Keratin, type I cytoskeletal 19 yes no 2 6.4575E-11 164.96 By MS/MS By matching By MS/MS 4.6 3.14 1 1 2 1 2 2 1 232980000 167890000 65085000 0 + 9129 51 9500 38828;38829;38830;38831;38832 32480;32481;32482 32480 3 169810000 16923000 0 LTMQVSSLQR SLIVEGKREKKKVERLTMQVSSLQREPFTI KKVERLTMQVSSLQREPFTIAQGKGQKLCE R L T Q R E 0 1 0 0 0 2 0 0 0 0 2 0 1 0 0 2 1 0 0 1 0 0 10 0 1161.6176 P35659 P35659 66 75 DEK Protein DEK yes yes 2 0.00057218 128.36 By matching By MS/MS 4 0.632 1 3 1 1 4 167260000 11271000 0 155990000 9130 758 9501;9502 38833;38834;38835;38836;38837 32483;32484;32485 32484 376 3 8793400 0 25329000 LTNEDFR DGHDVDDPHSFHQSKLTNEDFRKLLMTPRA PHSFHQSKLTNEDFRKLLMTPRAAPTSAPP K L T F R K 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 7 0 893.4243 Q13123 Q13123 31 37 IK Protein Red yes yes 2 0.043659 73.975 By MS/MS 3 0 1 1 7218600 0 0 7218600 9131 1222 9503 38838 32486 32486 0 0 0 1400100 LTNLEGIYNSETEK KVDEQNKDYKCLVEKLTNLEGIYNSETEKL KLTNLEGIYNSETEKLRSDLERLQLSEEEA K L T E K L 0 0 2 0 0 0 3 1 0 1 2 1 0 0 0 1 2 0 1 0 0 0 14 0 1609.7835 Q9Y4I1 Q9Y4I1 950 963 MYO5A Unconventional myosin-Va yes yes 2 0.0174 68.515 By MS/MS 1 0 1 1 0 0 0 0 9132 2287 9504 38839 32487 32487 1 0 0 0 LTNQELLR KKVQKSLQETIQSLKLTNQELLRKGSSNNQ ETIQSLKLTNQELLRKGSSNNQDVVTCDMA K L T L R K 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 8 0 985.55564 Q6NUQ4 Q6NUQ4 445 452 TMEM214 Transmembrane protein 214 yes yes 2 0.0015912 113.7 By MS/MS 3 0 1 1 3388600 0 3388600 0 9133 1481 9505 38840 32488 32488 1 0 1444600 0 LTNSMMMHGR AAKRFRKAQCPIVERLTNSMMMHGRNNGKK PIVERLTNSMMMHGRNNGKKLMTVRIVKHA R L T G R N 0 1 1 0 0 0 0 1 1 0 1 0 3 0 0 1 1 0 0 0 0 0 10 0 1176.5202 P46782 P46782 72 81 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 9.0868E-30 201.97 By matching By MS/MS By MS/MS 7 0 5 1 2 2 109820000 1451000 56906000 51464000 9134 832 9506;9507 38841;38842;38843;38844;38845 32489;32490;32491 32491 410 3 3127200 32676000 9132000 LTPEEEEILNK ESHYALPLGRKKGAKLTPEEEEILNKKRSK KGAKLTPEEEEILNKKRSKKIQKKYDERKK K L T N K K 0 0 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1313.6715 P62241 P62241 129 139 RPS8 40S ribosomal protein S8 yes yes 2 0.00017596 138.06 By MS/MS By MS/MS By MS/MS 6.38 0.992 2 2 3 1 1 3 4 524720000 4535200 47528000 472660000 9135 1008 9508 38846;38847;38848;38849;38850;38851;38852;38853 32492;32493;32494;32495;32496;32497 32496 6 9774300 24211000 81242000 LTPEEEEILNKK ESHYALPLGRKKGAKLTPEEEEILNKKRSK GAKLTPEEEEILNKKRSKKIQKKYDERKKN K L T K K R 0 0 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 12 1 1441.7664 P62241 P62241 129 140 RPS8 40S ribosomal protein S8 yes yes 2;3 3.4568E-05 152.86 By MS/MS 7 0.707 1 2 1 4 50492000 0 0 50492000 9136 1008 9509 38854;38855;38856;38857 32498;32499 32499 2 0 0 8731200 LTPEEEEILNKKR ESHYALPLGRKKGAKLTPEEEEILNKKRSK AKLTPEEEEILNKKRSKKIQKKYDERKKNA K L T K R S 0 1 1 0 0 0 4 0 0 1 2 2 0 0 1 0 1 0 0 0 0 0 13 2 1597.8675 P62241 P62241 129 141 RPS8 40S ribosomal protein S8 yes yes 4 0.037271 53.967 By MS/MS 6.5 0.5 1 1 2 3517100 0 3517100 0 9137 1008 9510 38858;38859 32500 32500 1 0 1712200 0 LTPEELER REISFQLSAPHEDARLTPEELERASLLQIL APHEDARLTPEELERASLLQILPEMLGAER R L T E R A 0 1 0 0 0 0 3 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 8 0 985.50803 O95399 O95399 42 49 UTS2 Urotensin-2 yes yes 2 0.0082256 95.909 By MS/MS By MS/MS By MS/MS 5 2.9 1 2 1 1 3 1 1 50976000 11209000 10777000 28989000 9138 323 9511 38860;38861;38862;38863;38864 32501;32502;32503 32503 3 10265000 4594300 5622600 LTPEEMMDSSTFKR KKKEKQKKRKAYEPKLTPEEMMDSSTFKRF KLTPEEMMDSSTFKRFTASIENILDNLEDM K L T K R F 0 1 0 1 0 0 2 0 0 0 1 1 2 1 1 2 2 0 0 0 0 0 14 1 1670.7644 Q6KC79 Q6KC79 1188 1201 NIPBL Nipped-B-like protein yes yes 3 0.0012377 85.323 By MS/MS 1 0 1 1 4603300 0 0 4603300 9139 1480 9512 38865 32504 32504 1 0 0 991850 LTPETLTR FILPDEGKMRDLEAKLTPETLTRWRNSLQP MRDLEAKLTPETLTRWRNSLQPRRIHELYL K L T T R W 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 0 3 0 0 0 0 0 8 0 929.5182 CON__Q9TTE1;CON__A2I7N1;CON__A2I7N3;CON__REFSEQ:XP_001252647 CON__Q9TTE1 284 291 no no 2 0.019677 84.568 By MS/MS By MS/MS By matching 6.83 2.34 1 1 2 2 3 1 2 52769000 42967000 5230800 4571000 + 9140 100;23 9513 38866;38867;38868;38869;38870;38871 32505;32506;32507 32507 3 38366000 26464000 3822600 LTPEYLQLMK ECYTAMKIAEANKLKLTPEYLQLMKYKAIA ANKLKLTPEYLQLMKYKAIASNSKIYFGKD K L T M K Y 0 0 0 0 0 1 1 0 0 0 3 1 1 0 1 0 1 0 1 0 0 0 10 0 1234.6631 O94905 O94905 276 285 ERLIN2 Erlin-2 yes yes 2 0.063099 69.423 By MS/MS 5 0 1 1 14951000 0 0 14951000 9141 304 9514 38872 32508 32508 1 0 0 2085400 LTPITYPQGLAMAK LRDDKDTIEKLKEKKLTPITYPQGLAMAKE KLTPITYPQGLAMAKEIGAVKYLECSALTQ K L T A K E 2 0 0 0 0 1 0 1 0 1 2 1 1 0 2 0 2 0 1 0 0 0 14 0 1502.8167 P63000 P63000 134 147 RAC1 Ras-related C3 botulinum toxin substrate 1 yes yes 2 0.019841 76.143 By MS/MS By matching 7 0 2 1 1 29764000 0 5573000 24191000 9142 1056 9515 38873;38874 32509 32509 0 0 3200100 4292500 LTPLILKPFGNSISR HQADIKEARREVEVKLTPLILKPFGNSISR LTPLILKPFGNSISRYNGEPEHIERNDAPH K L T S R Y 0 1 1 0 0 0 0 1 0 2 3 1 0 1 2 2 1 0 0 0 0 0 15 1 1654.977 Q14739 Q14739 117 131 LBR Lamin-B receptor yes yes 3 0.0094961 62.165 By MS/MS 4 0 1 1 4848100 0 4848100 0 9143 1318 9516 38875 32510 32510 1 0 1608900 0 LTPLQLEIQR QKSQLQRLLQELRRRLTPLQLEIQRVVEKA ELRRRLTPLQLEIQRVVEKADSWVEKEEPA R L T Q R V 0 1 0 0 0 2 1 0 0 1 3 0 0 0 1 0 1 0 0 0 0 0 10 0 1209.7081 Q8N163 Q8N163 896 905 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 0.00092417 111.82 By MS/MS 1.5 0.5 1 1 2 6809300 0 0 6809300 9144 1598 9517 38876;38877 32511 32511 1 0 0 1524600 LTPLSHEVISR PHLSRQDLTTLDVTKLTPLSHEVISRQATI DVTKLTPLSHEVISRQATINIGTIGHVAHG K L T S R Q 0 1 0 0 0 0 1 0 1 1 2 0 0 0 1 2 1 0 0 1 0 0 11 0 1250.6983 P41091;Q2VIR3 P41091 28 38 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2;3 0.00032772 125.97 By matching By MS/MS By MS/MS 6.38 2.64 4 1 1 2 1 4 3 324910000 5157800 146140000 173610000 9145 790 9518 38878;38879;38880;38881;38882;38883;38884;38885 32512;32513;32514;32515;32516 32513 5 4024000 68856000 43102000 LTPLTVLLR KREQVKVEQVAMELRLTPLTVLLRSVLDQL VAMELRLTPLTVLLRSVLDQLQDKDPARIF R L T L R S 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 0 2 0 0 1 0 0 9 0 1024.6645 O95696 O95696 564 572 BRD1 Bromodomain-containing protein 1 yes yes 2 0.00045636 123.69 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 6992200 0 1925600 5066600 9146 334 9519 38886;38887;38888;38889 32517;32518;32519 32519 3 0 867100 1083700 LTPQMFQQLMK KTQDLFRRVRSILNKLTPQMFQQLMKQVTQ ILNKLTPQMFQQLMKQVTQLAIDTEERLKG K L T M K Q 0 0 0 0 0 3 0 0 0 0 2 1 2 1 1 0 1 0 0 0 0 0 11 0 1363.6992 Q04637 Q04637 771 781 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 2 0.0024969 107.69 By matching By MS/MS 3.5 0.5 1 1 1 1 4837400 0 1925500 2911900 9147 1159 9520 38890;38891 32520 32520 1 0 820830 475600 LTPSGYEWGR TCSFTPGSCTLTAYKLTPSGYEWGRQNTDK LTAYKLTPSGYEWGRQNTDKGNNPKGYLPS K L T G R Q 0 1 0 0 0 0 1 2 0 0 1 0 0 0 1 1 1 1 1 0 0 0 10 0 1164.5564 Q6P2Q9 Q6P2Q9 2230 2239 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00099901 110.87 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 74789000 1540100 33209000 40040000 9148 1490 9521 38892;38893;38894;38895 32521;32522 32521 2 1540100 16232000 8663900 LTPTSVLDYFGTGSVQR EENTKTKNKPLSPIKLTPTSVLDYFGTGSV PTSVLDYFGTGSVQRSNKKMVASKRKELSQ K L T Q R S 0 1 0 1 0 1 0 2 0 0 2 0 0 1 1 2 3 0 1 2 0 0 17 0 1839.9367 P35251 P35251 160 176 RFC1 Replication factor C subunit 1 yes yes 2;3 7.4796E-06 136.82 By MS/MS By MS/MS 2.14 0.99 2 3 1 1 5 2 24681000 0 13113000 11568000 9149 746 9522 38896;38897;38898;38899;38900;38901;38902 32523;32524;32525;32526;32527;32528 32527 6 0 5762500 2568400 LTPVPDSFFAK GDARNKRQRNPRYEKLTPVPDSFFAKHLQT RYEKLTPVPDSFFAKHLQTGENHTSVDPRQ K L T A K H 1 0 0 1 0 0 0 0 0 0 1 1 0 2 2 1 1 0 0 1 0 0 11 0 1220.6441 O94906 O94906 179 189 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.047366 71.614 By MS/MS 2 0 1 1 0 0 0 0 9150 305 9523 38903 32529 32529 1 0 0 0 LTPVRPAAASPIVSGAR TIPITKPHTMKPAPRLTPVRPAAASPIVSG PVRPAAASPIVSGARRRRVRCRKCKACVQG R L T A R R 4 2 0 0 0 0 0 1 0 1 1 0 0 0 3 2 1 0 0 2 0 0 17 1 1661.9577 Q9Y2K7 Q9Y2K7 549 565 KDM2A Lysine-specific demethylase 2A yes yes 3 0.005054 61.167 By MS/MS By MS/MS 3.14 1.64 1 2 2 1 1 3 4 40883000 0 11645000 29238000 9151 2241 9524 38904;38905;38906;38907;38908;38909;38910 32530;32531;32532 32532 3 0 5176900 5746300 LTPVSPESSSTEEK IEVDIDVEHGGKRSRLTPVSPESSSTEEKS RLTPVSPESSSTEEKSSSQPSSCCSDPSKP R L T E K S 0 0 0 0 0 0 3 0 0 0 1 1 0 0 2 4 2 0 0 1 0 0 14 0 1489.7148 Q13501 Q13501 268 281 SQSTM1 Sequestosome-1 yes yes 2 0.0028079 97.734 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 8628300 0 1528700 7099600 9152 1253 9525 38911;38912;38913;38914 32533;32534;32535;32536 32535 3 0 507320 1220700 LTPYADQLQTK LQATVNQRVEELKGRLTPYADQLQTKIEEN LKGRLTPYADQLQTKIEENVEELRRSLAPY R L T T K I 1 0 0 1 0 2 0 0 0 0 2 1 0 0 1 0 2 0 1 0 0 0 11 0 1276.6663 CON__Q32PJ2 CON__Q32PJ2 201 211 yes yes 2 0.0049007 101.54 By MS/MS By MS/MS 5.5 0.5 1 1 1 1 77917000 39324000 0 38592000 + 9153 81 9526 38915;38916 32537;32538 32537 2 52361000 0 5382900 LTPYEVDELR KFEKNFYVEHPEVARLTPYEVDELRRKKEI PEVARLTPYEVDELRRKKEITVRGGDVCPK R L T L R R 0 1 0 1 0 0 2 0 0 0 2 0 0 0 1 0 1 0 1 1 0 0 10 0 1233.6241 Q92841 Q92841 144 153 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 0.00026954 123.16 By MS/MS 3.5 0.5 1 1 2 21349000 0 0 21349000 9154 1725 9527 38917;38918 32539 32539 1 0 0 4025100 LTPYEVDELRR KFEKNFYVEHPEVARLTPYEVDELRRKKEI EVARLTPYEVDELRRKKEITVRGGDVCPKP R L T R R K 0 2 0 1 0 0 2 0 0 0 2 0 0 0 1 0 1 0 1 1 0 0 11 1 1389.7252 Q92841 Q92841 144 154 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2;3 8.005E-08 161.27 By MS/MS By MS/MS 2.8 1.38 4 2 4 3 2 5 10 384870000 0 100320000 284550000 9155 1725 9528 38919;38920;38921;38922;38923;38924;38925;38926;38927;38928;38929;38930;38931;38932;38933 32540;32541;32542;32543;32544;32545;32546;32547;32548 32546 8 0 41468000 55517000 LTQDQDVDVK DNSTLQSEVKPILEKLTQDQDVDVKYFAQE PILEKLTQDQDVDVKYFAQEALTVLSLA__ K L T V K Y 0 0 0 3 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 10 0 1159.5721 P30153 P30153 567 576 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 2 0.00059047 116.05 By MS/MS 3.5 0.5 1 1 2 13626000 0 0 13626000 9156 712 9529 38934;38935 32549;32550 32550 1 0 0 2456600 LTQEPESIRK NGPADGYAAIAQADRLTQEPESIRKWREEQ AQADRLTQEPESIRKWREEQRKRLQELDAA R L T R K W 0 1 0 0 0 1 2 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 10 1 1199.651 P09497 P09497 96 105 CLTB Clathrin light chain B yes yes 3 0.06327 40.244 By MS/MS 6 0 1 1 2208500 0 2208500 0 9157 487 9530 38936 32551 32551 1 0 764520 0 LTQGLQEALDR KLQQQMDLQKNHIFRLTQGLQEALDRADLL HIFRLTQGLQEALDRADLLKTERSDLEYQL R L T D R A 1 1 0 1 0 2 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 11 0 1242.6568 O14578 O14578 1173 1183 CIT Citron Rho-interacting kinase yes yes 2 7.1196E-06 113.15 By MS/MS 1 0 1 1 0 0 0 0 9158 136 9531 38937 32552 32552 1 0 0 0 LTQILSYLR EAQTTLTTNDIVISKLTQILSYLRQGTRNK DIVISKLTQILSYLRQGTRNKKLKKKDKGK K L T L R Q 0 1 0 0 0 1 0 0 0 1 3 0 0 0 0 1 1 0 1 0 0 0 9 0 1105.6495 Q13123 Q13123 282 290 IK Protein Red yes yes 2 1.7078E-17 184.49 By MS/MS 4 0.816 1 1 1 3 34380000 0 34380000 0 9159 1222 9532 38938;38939;38940 32553;32554;32555 32554 2 0 13533000 0 LTQTSGETTHTDKEPVGEGK AQKVEVKEELLAVGKLTQTSGETTHTDKEP GETTHTDKEPVGEGKGTKAFKQPAKRKLDA K L T G K G 0 0 0 1 0 1 3 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2114.0128 P46013 P46013 2861 2880 MKI67 Antigen KI-67 yes yes 3;4 8.1858E-08 103.85 By MS/MS By MS/MS 2.33 1.11 4 2 4 2 6 6 39572000 0 14853000 24718000 9160 821 9533 38941;38942;38943;38944;38945;38946;38947;38948;38949;38950;38951;38952 32556;32557;32558;32559;32560;32561;32562;32563 32561 8 0 6792900 4989500 LTQTSGETTHTDKVPGGEDK LEKRDVQKELSALKKLTQTSGETTHTDKVP GETTHTDKVPGGEDKSINAFRETAKQKLDP K L T D K S 0 0 0 2 0 1 2 3 1 0 1 2 0 0 1 1 5 0 0 1 0 0 20 1 2099.9971 P46013 P46013 1410 1429 MKI67 Antigen KI-67 yes yes 3;4 0.00084058 64.2 By MS/MS By MS/MS 1.4 0.49 3 2 2 3 13032000 0 4789900 8241600 9161 821 9534 38953;38954;38955;38956;38957 32564;32565;32566;32567 32566 4 0 2269400 1789000 LTQTSGETTHTHTEPTGDGK LGKVGVKEELLAVGKLTQTSGETTHTHTEP GETTHTHTEPTGDGKSMKAFMESPKQILDS K L T G K S 0 0 0 1 0 1 2 3 2 0 1 1 0 0 1 1 7 0 0 0 0 0 20 0 2096.9611 P46013 P46013 1652 1671 MKI67 Antigen KI-67 yes yes 4 0.0001938 70.837 By matching By MS/MS 3.5 1.71 1 1 1 1 1 1 2 4 6342400 0 1713700 4628700 9162 821 9535 38958;38959;38960;38961;38962;38963 32568 32568 1 0 786070 838630 LTQTSGQSTHTHKEPASGDEGIK RPRKEVKEELSAVERLTQTSGQSTHTHKEP THTHKEPASGDEGIKVLKQRAKKKPNPVEE R L T I K V 1 0 0 1 0 2 2 3 2 1 1 2 0 0 1 3 4 0 0 0 0 0 23 1 2408.1568 P46013 P46013 2622 2644 MKI67 Antigen KI-67 yes yes 4;5 0.0047732 44.312 By matching By MS/MS 2.44 1.34 3 2 2 1 1 2 7 24525000 0 4231800 20293000 9163 821 9536 38964;38965;38966;38967;38968;38969;38970;38971;38972 32569;32570;32571;32572 32572 4 0 1965300 4165400 LTQVLNTHYVAPR MIVDEGHRMKNHHCKLTQVLNTHYVAPRRL CKLTQVLNTHYVAPRRLLLTGTPLQNKLPE K L T P R R 1 1 1 0 0 1 0 0 1 0 2 0 0 0 1 0 2 0 1 2 0 0 13 0 1510.8256 P51531;P51532 P51532 893 905 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2;3 0.00028017 134.13 By matching By MS/MS By MS/MS 1.2 0.4 4 1 1 1 3 131090000 1328700 21268000 108500000 9164 894;893 9537 38973;38974;38975;38976;38977 32573;32574;32575 32575 3 1328700 10396000 23531000 LTRDETNYGIPQR MILSASRDKTIIMWKLTRDETNYGIPQRAL WKLTRDETNYGIPQRALRGHSHFVSDVVIS K L T Q R A 0 2 1 1 0 1 1 1 0 1 1 0 0 0 1 0 2 0 1 0 0 0 13 1 1561.7849 P63244 P63244 45 57 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2;3 0.0014657 130.56 By MS/MS 6 0 2 2 42543000 0 42543000 0 9165 1068 9538 38978;38979 32576;32577 32576 2 0 14727000 0 LTSADALRPSVVSITGPLIR EQKEEAAKALGLVIRLTSADALRPSVVSIT ALRPSVVSITGPLIRILGDRFSWNVKAALL R L T I R I 2 2 0 1 0 0 0 1 0 2 3 0 0 0 2 3 2 0 0 2 0 0 20 1 2065.1895 Q92616 Q92616 2293 2312 GCN1L1 Translational activator GCN1 yes yes 3 6.4732E-14 124.31 By MS/MS By matching 1.5 0.5 1 1 1 1 4502600 0 3910900 591710 9166 1712 9539 38980;38981 32578 32578 1 0 1911600 133710 LTSDDVKEQIYK QSALPYRRSVPTWLKLTSDDVKEQIYKLAK WLKLTSDDVKEQIYKLAKKGLTPSQIGVIL K L T Y K L 0 0 0 2 0 1 1 0 0 1 1 2 0 0 0 1 1 0 1 1 0 0 12 1 1437.7351 P62277 P62277 28 39 RPS13 40S ribosomal protein S13 yes yes 2;3 0.0094033 101.3 By matching By MS/MS By MS/MS 6.5 0.764 1 1 4 1 3 2 117180000 40843000 24389000 51951000 9167 1016 9540 38982;38983;38984;38985;38986;38987 32579;32580;32581 32579 3 32721000 12701000 9218400 LTSFIGAIAIGDLVK IFKAGADEERAETARLTSFIGAIAIGDLVK LTSFIGAIAIGDLVKSTLGPKGMDKILLSS R L T V K S 2 0 0 1 0 0 0 2 0 3 2 1 0 1 0 1 1 0 0 1 0 0 15 0 1516.8865 P78371 P78371 26 40 CCT2 T-complex protein 1 subunit beta yes yes 2 0.0077026 78.324 By matching By MS/MS 4 0 2 1 1 3947900 974530 2973400 0 9168 1086 9541 38988;38989 32582 32582 1 760310 986750 0 LTSLVPFVDAFQLER LQQVSQIYQSIEFSRLTSLVPFVDAFQLER LTSLVPFVDAFQLERAIVDAARHCDLQVRI R L T E R A 1 1 0 1 0 1 1 0 0 0 3 0 0 2 1 1 1 0 0 2 0 0 15 0 1733.9352 Q14152 Q14152 455 469 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00057412 106.49 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 19837000 0 6283900 13553000 9169 1286 9542 38990;38991;38992;38993;38994 32583;32584;32585 32585 3 0 2888400 2919400 LTSSSIDPGLSIK DEEDFLNSTKAKLLKLTSSSIDPGLSIKQL LKLTSSSIDPGLSIKQLGGLYINFNADKLQ K L T I K Q 0 0 0 1 0 0 0 1 0 2 2 1 0 0 1 4 1 0 0 0 0 0 13 0 1316.7187 Q5QJE6 Q5QJE6 559 571 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.014585 83.397 By MS/MS By MS/MS 3.4 1.5 2 1 1 1 1 4 30442000 0 4388200 26054000 9170 1442 9543 38995;38996;38997;38998;38999 32586;32587;32588 32586 3 0 1976100 4720500 LTTAASLLDVFVLTR LFRLLYWWAGTTWYRLTTAASLLDVFVLTR LTTAASLLDVFVLTRRFSSLKTFLWFLLPL R L T T R R 2 1 0 1 0 0 0 0 0 0 4 0 0 1 0 1 3 0 0 2 0 0 15 0 1618.9294 Q9UH99 Q9UH99 191 205 SUN2 SUN domain-containing protein 2 yes yes 2;3 0.00062731 103.88 By matching By MS/MS By MS/MS 2.75 0.433 1 3 1 1 2 10039000 352060 411260 9275400 9171 2148 9544 39000;39001;39002;39003 32589;32590;32591 32590 3 424190 175320 1799000 LTTDFNVIVEALSK WVPLEIMIKFNRLNRLTTDFNVIVEALSKS RLTTDFNVIVEALSKSKAELMEISEDKTKI R L T S K S 1 0 1 1 0 0 1 0 0 1 2 1 0 1 0 1 2 0 0 2 0 0 14 0 1548.8399 P05455 P05455 61 74 SSB Lupus La protein yes yes 2 0.00057359 140.08 By MS/MS By MS/MS 4.75 0.829 2 1 1 3 1 13761000 0 7856700 5904200 9172 434 9545 39004;39005;39006;39007 32592;32593 32592 2 0 2157600 964350 LTTLELLEVR KSAATWDERFSALERLTTLELLEVRRQQEE SALERLTTLELLEVRRQQEEEERKRRPPSP R L T V R R 0 1 0 0 0 0 2 0 0 0 4 0 0 0 0 0 2 0 0 1 0 0 10 0 1185.6969 Q01082 Q01082 2079 2088 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00039478 125.82 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 1 3 39179000 210080 10927000 28042000 9173 1128 9546 39008;39009;39010;39011;39012 32594;32595;32596 32595 3 210080 5340900 6034300 LTTLPSDFCGLTHLVK AALPKATILDLSCNKLTTLPSDFCGLTHLV TTLPSDFCGLTHLVKLDLSKNKLQQLPADF K L T V K L 0 0 0 1 1 0 0 1 1 0 4 1 0 1 1 1 3 0 0 1 0 0 16 0 1800.9444 Q96AG4 Q96AG4 51 66 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 0.0028401 79.492 By MS/MS By MS/MS By MS/MS 3.6 1.96 2 2 1 1 1 3 2 4 4 187400000 19068000 16186000 152150000 9174 1751 9547 39013;39014;39015;39016;39017;39018;39019;39020;39021;39022 32597;32598;32599;32600;32601;32602;32603;32604 32601 8 20931000 6045000 24315000 LTTPPVNTR MAIKSRVVLPYLVPKLTTPPVNTRVLAFLS PYLVPKLTTPPVNTRVLAFLSSVAGDALTR K L T T R V 0 1 1 0 0 0 0 0 0 0 1 0 0 0 2 0 3 0 0 1 0 0 9 0 997.55564 Q92616 Q92616 2084 2092 GCN1L1 Translational activator GCN1 yes yes 2 0.023519 79.906 By MS/MS 1 0 1 1 2477200 0 2477200 0 9175 1712 9548 39023 32605 32605 1 0 1210800 0 LTTPTYGDLNHLVSATMSGVTTCLR IDNEALYDICFRTLKLTTPTYGDLNHLVSA HLVSATMSGVTTCLRFPGQLNADLRKLAVN K L T L R F 1 1 1 1 1 0 0 2 1 0 4 0 1 0 1 2 6 0 1 2 0 0 25 0 2707.3309 P07437;P68371;Q13885;Q9BVA1;P04350 P68371 217 241 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 2;3;4 2.5638E-29 152.13 By matching By MS/MS By MS/MS 4.58 0.878 2 7 7 3 1 7 11 249520000 1335700 46366000 201820000 9176 1079;462;1274;414 9549;9550 39024;39025;39026;39027;39028;39029;39030;39031;39032;39033;39034;39035;39036;39037;39038;39039;39040;39041;39042 32606;32607;32608;32609;32610;32611;32612;32613;32614;32615;32616;32617;32618 32615 146 13 1042100 13949000 32271000 LTTPTYGDLNHLVSATMSGVTTSLR IDNEALYDICFRTLKLTTPTYGDLNHLVSA HLVSATMSGVTTSLRFPGQLNADLRKLAVN K L T L R F 1 1 1 1 0 0 0 2 1 0 4 0 1 0 1 3 6 0 1 2 0 0 25 0 2634.3323 Q9BUF5 Q9BUF5 217 241 TUBB6 Tubulin beta-6 chain yes yes 3 3.825E-16 100.29 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 71888000 0 59780000 12108000 9177 1905 9551 39043;39044;39045;39046 32619;32620;32621;32622 32621 4 0 19518000 2070200 LTTTGQVTSPVK KAAGTPKKKAVVQAKLTTTGQVTSPVKGAS QAKLTTTGQVTSPVKGASFVTSTNPRKFSG K L T V K G 0 0 0 0 0 1 0 1 0 0 1 1 0 0 1 1 4 0 0 2 0 0 12 0 1230.682 P49916 P49916 202 213 LIG3 DNA ligase 3 yes yes 2 0.053493 72.2 By MS/MS 2 0.816 1 1 1 3 9873700 0 0 9873700 9178 874 9552 39047;39048;39049 32623 32623 1 0 0 2136500 LTTYPQTTIR ITQNTEQELHSPTVKLTTYPQTTIRKYVVQ SPTVKLTTYPQTTIRKYVVQNPEQEPLSQF K L T I R K 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 4 0 1 0 0 0 10 0 1192.6452 Q8WVV4 Q8WVV4 128 137 POF1B Protein POF1B yes yes 2 0.06973 66.27 By MS/MS 1 0 1 1 0 0 0 0 9179 1684 9553 39050 32624 32624 1 0 0 0 LTVDEAVR QAGTGHIIDPATSARLTVDEAVRAGLVGPE DPATSARLTVDEAVRAGLVGPEFHEKLLSA R L T V R A 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 8 0 901.4869 Q15149 Q15149 3213 3220 PLEC Plectin yes no 2 0.0015125 114.78 By MS/MS By matching 1.5 0.5 1 1 1 1 41051000 0 40116000 935430 9180 1348 9554 39051;39052 32625 32625 1 0 19608000 211390 LTVDSAIAR QAATGGIIDPHRNEKLTVDSAIARDLIDFD PHRNEKLTVDSAIARDLIDFDDRQQIYAAE K L T A R D 2 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 944.5291 P15924 P15924 2067 2075 DSP Desmoplakin yes yes 2 6.3311E-05 146.54 By MS/MS By MS/MS By MS/MS 4.8 4.26 2 1 2 1 2 2 82114000 2460800 31488000 48165000 9181 572 9555 39053;39054;39055;39056;39057 32626;32627;32628 32628 3 4483200 15282000 11185000 LTVEDPVTVEYITR RIVINRARVECQSHRLTVEDPVTVEYITRY RLTVEDPVTVEYITRYIASLKQRYTQSNGR R L T T R Y 0 1 0 1 0 0 2 0 0 1 1 0 0 0 1 0 3 0 1 3 0 0 14 0 1633.8563 O14818;Q8TAA3 O14818 96 109 PSMA7;PSMA8 Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like yes no 2 0.022982 72.958 By matching By MS/MS 7 0 2 1 1 6206700 0 840190 5366500 9182 147 9556 39058;39059 32629 32629 1 0 482440 952250 LTVIAENMWDPFSTTQTSR VALLPTIVEKVILPKLTVIAENMWDPFSTT AENMWDPFSTTQTSRMVGITLKLINGYPSV K L T S R M 1 1 1 1 0 1 1 0 0 1 1 0 1 1 1 2 4 1 0 1 0 0 19 0 2196.0521 Q9Y5B6 Q9Y5B6 688 706 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 1.5082E-08 113.76 By MS/MS 2 0 1 1 2323100 0 0 2323100 9183 2295 9557 39060 32630 32630 1 0 0 524970 LTVLSEER LLAAGHYASDEVREKLTVLSEERAALLELW SDEVREKLTVLSEERAALLELWELRRQQYE K L T E R A 0 1 0 0 0 0 2 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 8 0 945.51311 Q13813 Q13813 442 449 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 5.3875E-05 150.17 By MS/MS By MS/MS 1 0 2 1 1 46992000 0 20092000 26900000 9184 1268 9558 39061;39062 32631;32632 32632 2 0 9820800 5796000 LTVMSLQESGLK PYLVPVIAPSDDARRLTVMSLQESGLKVNQ ARRLTVMSLQESGLKVNQPASFAIRLNGAK R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 1 0 0 2 1 0 0 1 0 0 12 0 1304.701 O75369 O75369 2290 2301 FLNB Filamin-B yes yes 2 0.020936 83.883 By MS/MS 1 0 1 1 1391000 0 0 1391000 9185 254 9559 39063 32633 32633 0 0 0 299710 LTVMYSQINGASR LSQASADLEATLRHKLTVMYSQINGASRAL HKLTVMYSQINGASRALDDVRNRQQDVRMT K L T S R A 1 1 1 0 0 1 0 1 0 1 1 0 1 0 0 2 1 0 1 1 0 0 13 0 1438.7238 Q14258 Q14258 206 218 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 7.0368E-08 172.8 By MS/MS By matching 3.5 0.5 1 1 1 1 9145700 0 5551000 3594700 9186 1297 9560 39064;39065 32634 32634 1 0 2366400 587140 LTVNPGTK PLEIDYGQDEEAVKKLTVNPGTKSKLPKPV DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF K L T T K S 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 1 0 0 8 0 828.47052 P09874 P09874 655 662 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0085361 95.531 By MS/MS By matching 2 0.816 1 1 1 2 1 12702000 0 10094000 2607300 9187 492 9561 39066;39067;39068 32635 32635 1 0 4593800 505680 LTVTSLQETGLK PFVVPVASLSDDARRLTVTSLQETGLKVNQ ARRLTVTSLQETGLKVNQPASFAVQLNGAR R L T L K V 0 0 0 0 0 1 1 1 0 0 3 1 0 0 0 1 3 0 0 1 0 0 12 0 1288.7238 Q14315 Q14315 2411 2422 FLNC Filamin-C yes yes 2 1.9225E-05 152.97 By MS/MS 1 0 1 1 9196500 0 9196500 0 9188 1298 9562 39069 32636 32636 1 0 4495100 0 LTWASHEK DKQLSFEEFIMLMARLTWASHEKMHEGDEG FIMLMARLTWASHEKMHEGDEGPGHHHKPG R L T E K M 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 1 1 1 0 0 0 0 8 0 970.48723 P06702 P06702 86 93 S100A9 Protein S100-A9 yes yes 2 0.018302 85.642 By MS/MS 8.5 1.12 1 1 1 1 4 11395000 11395000 0 0 9189 445 9563 39070;39071;39072;39073 32637;32638 32637 2 12471000 0 0 LTWHAYPEDAENK NVKCPQIVIAFYEERLTWHAYPEDAENKEK ERLTWHAYPEDAENKEKETAKS________ R L T N K E 2 0 1 1 0 0 2 0 1 0 1 1 0 0 1 0 1 1 1 0 0 0 13 0 1572.7209 P45973 P45973 172 184 CBX5 Chromobox protein homolog 5 yes yes 2;3 0.00032816 143.4 By matching By MS/MS 7 0.632 1 3 1 1 4 166190000 0 2186900 164000000 9190 820 9564 39074;39075;39076;39077;39078 32639;32640;32641;32642 32640 4 0 1255700 28840000 LTWHAYPEDAENKEK NVKCPQIVIAFYEERLTWHAYPEDAENKEK LTWHAYPEDAENKEKETAKS__________ R L T E K E 2 0 1 1 0 0 3 0 1 0 1 2 0 0 1 0 1 1 1 0 0 0 15 1 1829.8584 P45973 P45973 172 186 CBX5 Chromobox protein homolog 5 yes yes 2;3;4 0.00046208 113.24 By MS/MS 7 0.756 2 3 2 7 202850000 0 0 202850000 9191 820 9565 39079;39080;39081;39082;39083;39084;39085 32643;32644;32645 32644 3 0 0 35107000 LTWHSCPEDEAQ NMKCPQIVIAFYEERLTWHSCPEDEAQ___ EERLTWHSCPEDEAQ_______________ R L T A Q - 1 0 0 1 1 1 2 0 1 0 1 0 0 0 1 1 1 1 0 0 0 0 12 0 1471.6038 Q13185 Q13185 172 183 CBX3 Chromobox protein homolog 3 yes yes 2 0.00057723 124.23 By MS/MS By matching By MS/MS 7.6 0.8 3 1 1 2 1 2 169830000 28868000 2860800 138100000 9192 1228 9566 39086;39087;39088;39089;39090 32646;32647;32648;32649 32647 3 53932000 1642700 25184000 LTWHSYPSEDDDKKDDK NVKCPQVVISFYEERLTWHSYPSEDDDKKD WHSYPSEDDDKKDDKN______________ R L T D K N 0 0 0 5 0 0 1 0 1 0 1 3 0 0 1 2 1 1 1 0 0 0 17 2 2077.9229 P83916 P83916 168 184 CBX1 Chromobox protein homolog 1 yes yes 4 0.016792 50.416 By MS/MS 7 0 1 1 9148100 0 0 9148100 9193 1109 9567 39091 32650 32650 1 0 0 1623300 LTYEIEDEKR KCYGQIKELNEKITRLTYEIEDEKRRRKSV EKITRLTYEIEDEKRRRKSVEDRFDQQKND R L T K R R 0 1 0 1 0 0 3 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1294.6405 P15924 P15924 1114 1123 DSP Desmoplakin yes yes 2;3 2.8691E-16 180.44 By MS/MS By matching By MS/MS 2.6 3.2 4 1 2 1 2 38161000 4246300 6385500 27530000 9194 572 9568 39092;39093;39094;39095;39096 32651;32652;32653;32654 32654 4 4246300 3121100 5931700 LTYEIEDEKRR KCYGQIKELNEKITRLTYEIEDEKRRRKSV KITRLTYEIEDEKRRRKSVEDRFDQQKNDY R L T R R R 0 2 0 1 0 0 3 0 0 1 1 1 0 0 0 0 1 0 1 0 0 0 11 2 1450.7416 P15924 P15924 1114 1124 DSP Desmoplakin yes yes 3 1.8007E-06 113.69 By MS/MS 1 0 1 1 0 0 0 0 9195 572 9569 39097 32655 32655 1 0 0 0 LTYHQLLER GTGDLRFLDPNTLERLTYHQLLERCVRAPG PNTLERLTYHQLLERCVRAPGSGLALLPLK R L T E R C 0 1 0 0 0 1 1 0 1 0 3 0 0 0 0 0 1 0 1 0 0 0 9 0 1171.635 P58107 P58107 209 217 EPPK1 Epiplakin yes yes 2 0.042846 73.573 By MS/MS 1 0 1 1 6704800 0 0 6704800 9196 958 9570 39098 32656 32656 1 0 0 1444600 LTYLLQNSLGGSAK ALSNKESHVPYRNSKLTYLLQNSLGGSAKM KLTYLLQNSLGGSAKMLMFVNISPLEENVS K L T A K M 1 0 1 0 0 1 0 2 0 0 4 1 0 0 0 2 1 0 1 0 0 0 14 0 1463.7984 Q9BW19 Q9BW19 620 633 KIFC1 Kinesin-like protein KIFC1 yes yes 2 6.8551E-05 158.56 By MS/MS By MS/MS 3 0 2 1 1 17765000 0 9708200 8057000 9197 1919 9571 39099;39100 32657;32658 32657 2 0 4138600 1562700 LTYPQPVTPWNVQELR INTNEIGIPMVFATKLTYPQPVTPWNVQEL TYPQPVTPWNVQELRQAVINGPNVHPGASM K L T L R Q 0 1 1 0 0 2 1 0 0 0 2 0 0 0 3 0 2 1 1 2 0 0 16 0 1940.0156 O95602 O95602 466 481 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.000131 100.19 By MS/MS By MS/MS 1 0 2 1 1 6319200 0 2197700 4121500 9198 330 9572 39101;39102 32659;32660 32660 2 0 1074200 888040 LTYQDAVNLQNYVEEK KYNHLVYSQIPAAVKLTYQDAVNLQNYVEE TYQDAVNLQNYVEEKLIPTWNWMVSIMDST K L T E K L 1 0 2 1 0 2 2 0 0 0 2 1 0 0 0 0 1 0 2 2 0 0 16 0 1925.9371 O95071 O95071 1819 1834 UBR5 E3 ubiquitin-protein ligase UBR5 yes yes 2 0.011941 74.46 By MS/MS 1.5 0.5 1 1 2 5969800 0 0 5969800 9199 308 9573 39103;39104 32661 32661 0 0 0 1309500 LVAASQAALGL KADDKETCFAEEGKKLVAASQAALGL____ EGKKLVAASQAALGL_______________ K L V G L - 4 0 0 0 0 1 0 1 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1012.5917 CON__P02768-1;P02768 CON__P02768-1 599 609 ALB Serum albumin yes no 2 0.00095822 114.78 By MS/MS By matching 6.61 2.85 1 1 2 1 1 1 2 3 3 3 16 2 1538100000 1536700000 0 1374800 + 9200 44 9574 39105;39106;39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117;39118;39119;39120;39121;39122 32662;32663;32664;32665;32666;32667;32668;32669;32670;32671;32672;32673 32669 12 1471700000 0 1063500 LVAFCPFASSQVALENANAVSEGVVHEDLR EESVLNLGKFHSIVRLVAFCPFASSQVALE NANAVSEGVVHEDLRLLLETHLPSKKKKVL R L V L R L 5 1 2 1 1 1 3 1 1 0 3 0 0 2 1 3 0 0 0 5 0 0 30 0 3228.5874 O00567 O00567 48 77 NOP56 Nucleolar protein 56 yes yes 3 2.406E-15 86.304 By MS/MS 2.5 0.5 1 1 2 19408000 0 0 19408000 9201 130 9575 39123;39124 32674 32674 1 0 0 3783500 LVAGEMGQNEPDQGGQR RVLDVNLMGTFNVIRLVAGEMGQNEPDQGG AGEMGQNEPDQGGQRGVIINTASVAAFEGQ R L V Q R G 1 1 1 1 0 3 2 4 0 0 1 0 1 0 1 0 0 0 0 1 0 0 17 0 1784.8112 Q99714 Q99714 131 147 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2 1.4045E-36 207.88 By matching By MS/MS 7 0 2 1 1 16081000 0 2308500 13773000 9202 1859 9576 39125;39126 32675 32675 1 0 1325500 2443900 LVAGSTDQLLSAFVPPEEPPLQPAR VEDSVLLLNPALGDRLVAGSTDQLLSAFVP SAFVPPEEPPLQPARWLEASEEERQVGLRL R L V A R W 3 1 0 1 0 2 2 1 0 0 4 0 0 1 5 2 1 0 0 2 0 0 25 0 2631.3908 Q14137 Q14137 490 514 BOP1 Ribosome biogenesis protein BOP1 yes yes 2;3 7.7356E-26 130.83 By MS/MS By MS/MS 2.67 1.15 1 4 2 1 1 3 6 55929000 0 18795000 37134000 9203 1283 9577 39127;39128;39129;39130;39131;39132;39133;39134;39135 32676;32677;32678;32679;32680;32681;32682;32683 32678 8 0 8501700 6654200 LVAIVDVIDQNR VGRVAYVSFGPHAGKLVAIVDVIDQNRALV AGKLVAIVDVIDQNRALVDGPCTQVRRQAM K L V N R A 1 1 1 2 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0 3 0 0 12 0 1353.7616 P50914 P50914 24 35 RPL14 60S ribosomal protein L14 yes yes 2;3 2.651E-18 193.82 By matching By MS/MS By MS/MS 6.86 1.81 1 3 2 4 1 1 2 1 7 6 304590000 24261000 73181000 207150000 9204 884 9578 39136;39137;39138;39139;39140;39141;39142;39143;39144;39145;39146;39147;39148;39149 32684;32685;32686;32687;32688;32689;32690;32691;32692;32693;32694 32691 10 19436000 43891000 46225000 LVAQFPSSGR AQNQPIDKARKTYERLVAQFPSSGRFWKLY KTYERLVAQFPSSGRFWKLYIEAEIKAKNY R L V G R F 1 1 0 0 0 1 0 1 0 0 1 0 0 1 1 2 0 0 0 1 0 0 10 0 1060.5665 Q12996 Q12996 57 66 CSTF3 Cleavage stimulation factor subunit 3 yes yes 2 0.0035658 101.72 By MS/MS 3 0 1 1 7189200 0 0 7189200 9205 1214 9579 39150 32695 32695 1 0 0 1394400 LVAYYTLIGASGQR VLPLSITTDFIPSFRLVAYYTLIGASGQRE RLVAYYTLIGASGQREVVADSVWVDVKDSC R L V Q R E 2 1 0 0 0 1 0 2 0 1 2 0 0 0 0 1 1 0 2 1 0 0 14 0 1510.8144 P01024 P01024 531 544 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2;3 0.00019211 152.07 By MS/MS 9.67 0.471 1 2 3 15478000 15478000 0 0 9206 371 9580 39151;39152;39153 32696;32697;32698 32696 2 12317000 0 0 LVDGTGHRPHYSLR IINFYTALRKESGTKLVDGTGHRPHYSLRT KLVDGTGHRPHYSLRTLCRALRFAASNPCG K L V L R T 0 2 0 1 0 0 0 2 2 0 2 0 0 0 1 1 1 0 1 1 0 0 14 1 1606.8328 Q9NU22 Q9NU22 952 965 MDN1 Midasin yes yes 4 0.00011818 116.84 By MS/MS 1 0 1 1 8763400 0 0 8763400 9207 2056 9581 39154 32699 32699 1 0 0 1888200 LVDHIDQTPGFSLQQLR GYRCLADIVVATPGRLVDHIDQTPGFSLQQ DHIDQTPGFSLQQLRFLIIDEADRMIDSMH R L V L R F 0 1 0 2 0 3 0 1 1 1 3 0 0 1 1 1 1 0 0 1 0 0 17 0 1966.0272 Q8N8A6 Q8N8A6 350 366 DDX51 ATP-dependent RNA helicase DDX51 yes yes 3 0.0011044 74.141 By MS/MS 3 0 1 1 3807900 0 3807900 0 9208 1615 9582 39155 32700 32700 1 0 1623300 0 LVDKFLEDVKK QLTTGNGLFLSEGLKLVDKFLEDVKKLYHS EGLKLVDKFLEDVKKLYHSEAFTVNFGDTE K L V K K L 0 0 0 2 0 0 1 0 0 0 2 3 0 1 0 0 0 0 0 2 0 0 11 2 1332.7653 P01009 P01009 150 160 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 3 1.7475E-05 143.79 By MS/MS 9 0 1 1 28572000 28572000 0 0 9209 367 9583 39156 32701 32701 1 16038000 0 0 LVDLPLGLPFYK RFLGKLMAKAIMDFRLVDLPLGLPFYKWML DFRLVDLPLGLPFYKWMLRQETSLTSHDLF R L V Y K W 0 0 0 1 0 0 0 1 0 0 4 1 0 1 2 0 0 0 1 1 0 0 12 0 1373.7959 Q14669 Q14669 1713 1724 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.0052621 102.61 By MS/MS 1.5 0.5 1 1 2 4481100 0 4481100 0 9210 1308 9584 39157;39158 32702;32703 32702 2 0 2135000 0 LVDMMER DLERGCHLLVATPGRLVDMMERGKIGLDFC LLVATPGRLVDMMERGKIGLDFCKYLVLDE R L V E R G 0 1 0 1 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 7 0 892.41466 O00571;O15523 O00571 327 333 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0075691 124.37 By MS/MS By MS/MS 3.43 1.59 1 1 2 1 1 1 2 5 117100000 0 25469000 91633000 9211 131 9585 39159;39160;39161;39162;39163;39164;39165 32704;32705;32706 32706 3 0 10500000 17605000 LVDPERDMSLR ILSEEELSLLDEFYKLVDPERDMSLRLNEQ EFYKLVDPERDMSLRLNEQYEHASIHLWDL K L V L R L 0 2 0 2 0 0 1 0 0 0 2 0 1 0 1 1 0 0 0 1 0 0 11 1 1329.6711 Q14444 Q14444 192 202 CAPRIN1 Caprin-1 yes yes 3 0.033521 58.172 By MS/MS By matching 3 0.816 1 1 1 2 1 10975000 0 7427900 3547300 9212 1301 9586 39166;39167;39168 32707 32707 1 0 3298900 579390 LVDQNLNK EMKLRLDSIVIQQGRLVDQNLNKIGKDEML IVIQQGRLVDQNLNKIGKDEMLQMIRHGAT R L V N K I 0 0 2 1 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 8 0 942.51345 O60264 O60264 637 644 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.056529 71.342 By MS/MS 1.5 0.5 1 1 2 5477400 0 5477400 0 9213 223 9587 39169;39170 32708 32708 1 0 2507200 0 LVDSPDIQPVGTCEK RLRLDGSDNRNDFWRLVDSPDIQPVGTCEK LVDSPDIQPVGTCEKEGDLLQPPLGYQMNT R L V E K E 0 0 0 2 1 1 1 1 0 1 1 1 0 0 2 1 1 0 0 2 0 0 15 0 1656.8029 Q9UQR0 Q9UQR0 109 123 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.0059368 81.625 By MS/MS 3 0 1 1 4395200 0 0 4395200 9214 2224 9588 39171 32709 32709 1 0 0 852470 LVDTAWLEIMTK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV LEKLVDTAWLEIMTKYAVGEECDFEVGKEK K L V T K Y 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 0 2 1 0 1 0 0 12 0 1418.7479 Q9UIG0 Q9UIG0 102 113 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00045728 126.67 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 25057000 0 3455000 21602000 9215 2164 9589 39172;39173;39174;39175 32710;32711;32712;32713 32712 4 0 1574500 4703400 LVDTFLEDVK QLTTGNGLFINESAKLVDTFLEDVKNLYHS NESAKLVDTFLEDVKNLYHSEAFSINFRDA K L V V K N 0 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 2 0 0 10 0 1177.6231 CON__P34955 CON__P34955 148 157 yes yes 2 6.9672E-05 148.52 By MS/MS By MS/MS By MS/MS 5.11 2.53 2 2 1 3 2 3 3 1 1 1 4 7 8 314390000 155230000 41754000 117410000 + 9216 64 9590 39176;39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190;39191;39192;39193;39194 32714;32715;32716;32717;32718;32719;32720;32721;32722;32723 32714 10 129940000 104740000 19635000 LVDTGDKFR AWKSLLDACESRRVRLVDTGDKFRFFSMVR ESRRVRLVDTGDKFRFFSMVRDLMLWMEDV R L V F R F 0 1 0 2 0 0 0 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 9 1 1049.5506 Q01082 Q01082 1907 1915 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.0036119 123.98 By MS/MS By MS/MS 1 0 2 1 1 17861000 0 6280700 11580000 9217 1128 9591 39195;39196 32724;32725 32725 2 0 3069900 2495100 LVEALCAEHQINLIK LCVLASNCDEPMYVKLVEALCAEHQINLIK LVEALCAEHQINLIKVDDNKKLGEWVGLCK K L V I K V 2 0 1 0 1 1 2 0 1 2 3 1 0 0 0 0 0 0 0 1 0 0 15 0 1749.9447 P25398 P25398 64 78 RPS12 40S ribosomal protein S12 yes yes 2 1.8958E-17 189.43 By MS/MS 8 0.816 1 1 1 3 49439000 0 0 49439000 9218 657 9592 39197;39198;39199 32726;32727 32727 2 0 0 12806000 LVEDMENKIR ETVSDCSPHIANIGRLVEDMENKIRSTLNE ANIGRLVEDMENKIRSTLNEIYFGKTKDIV R L V I R S 0 1 1 1 0 0 2 0 0 1 1 1 1 0 0 0 0 0 0 1 0 0 10 1 1245.6387 P47756 P47756 216 225 CAPZB F-actin-capping protein subunit beta yes yes 2;3 2.5741E-15 175.44 By MS/MS 6.33 0.471 2 1 3 27270000 0 27270000 0 9219 837 9593 39200;39201;39202 32728;32729 32729 2 0 9823200 0 LVEEQNAEK AFIRKRDKRVQAHRKLVEEQNAEKARKAEE VQAHRKLVEEQNAEKARKAEEMRRQQKLKQ K L V E K A 1 0 1 0 0 1 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1058.5244 Q5F1R6 Q5F1R6 223 231 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.0085699 90.657 By matching By MS/MS 2.5 0.5 1 1 1 1 2832000 1336900 0 1495100 9220 1436 9594 39203;39204 32730 32730 1 1610800 0 289980 LVEGILHAPDAGWGNLVYVVNYPK LRYRNPVSQCMRGVRLVEGILHAPDAGWGN DAGWGNLVYVVNYPKDNKRKMDETDASSAV R L V P K D 2 0 2 1 0 0 1 3 1 1 3 1 0 0 2 0 0 1 2 4 0 0 24 0 2623.3799 Q13148 Q13148 56 79 TARDBP TAR DNA-binding protein 43 yes yes 3 0.00045721 56.247 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 20027000 0 2617700 17409000 9221 1224 9595 39205;39206;39207;39208 32731;32732;32733;32734 32733 3 0 893750 2594600 LVEGPPPPPEPPK RFGIMEKVYCHYFVKLVEGPPPPPEPPKTA VKLVEGPPPPPEPPKTAVAHAKEYIQQLRS K L V P K T 0 0 0 0 0 0 2 1 0 0 1 1 0 0 7 0 0 0 0 1 0 0 13 0 1352.734 Q9NWU5 Q9NWU5 172 184 MRPL22 39S ribosomal protein L22, mitochondrial yes yes 2 0.014805 72.434 By matching By MS/MS 7 0 2 1 1 17260000 0 6182500 11078000 9222 2080 9596 39209;39210 32735 32735 0 0 3550000 1965600 LVEIDNGK YSEELRETKRRHETRLVEIDNGKQREFESR KRRHETRLVEIDNGKQREFESRLADALQEL R L V G K Q 0 0 1 1 0 0 1 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 886.476 P02545 P02545 226 233 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 8.0495E-05 148.33 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 3 3 221680000 0 33999000 187680000 9223 387 9597 39211;39212;39213;39214;39215;39216 32736;32737;32738 32736 3 0 14690000 36022000 LVEKPSPLTLAPHDFANIK LQNCTLELATLGDLKLVEKPSPLTLAPHDF PSPLTLAPHDFANIKANVKVASTENGIIFG K L V I K A 2 0 1 1 0 0 1 0 1 1 3 2 0 1 3 1 1 0 0 1 0 0 19 1 2089.1572 P53618 P53618 768 786 COPB1 Coatomer subunit beta yes yes 4 0.024127 39.523 By matching By MS/MS 7 0 2 1 1 5150400 0 907680 4242800 9224 921 9598 39217;39218 32739 32739 1 0 521200 752850 LVELLMHNDYK NDKIQAVIDAGVCRRLVELLMHNDYKVVSP VCRRLVELLMHNDYKVVSPALRAVGNIVTG R L V Y K V 0 0 1 1 0 0 1 0 1 0 3 1 1 0 0 0 0 0 1 1 0 0 11 0 1373.7013 P52294;O60684;O15131 P52294 301 311 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 3 0.0072518 76.302 By MS/MS 4 0 1 1 22228000 0 0 22228000 9225 904;167 9599 39219 32740 32740 1 0 0 3630600 LVELNEDVRPHIR KNDNELLKLIPFLEKLVELNEDVRPHIRDR EKLVELNEDVRPHIRDRFRLHDLLPPD___ K L V I R D 0 2 1 1 0 0 2 0 1 1 2 0 0 0 1 0 0 0 0 2 0 0 13 1 1588.8685 Q05D32 Q05D32 442 454 CTDSPL2 CTD small phosphatase-like protein 2 yes yes 3 0.0070834 68.676 By MS/MS 4 0 1 1 0 0 0 0 9226 1167 9600 39220 32741 32741 1 0 0 0 LVEQAFR GKGSFWRIDPASEAKLVEQAFRKRRQRGVS IDPASEAKLVEQAFRKRRQRGVSCFRTPFG K L V F R K 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 7 0 861.47085 P85037 P85037 389 395 FOXK1 Forkhead box protein K1 yes yes 2 0.017647 106.76 By matching By MS/MS 2.5 0.5 1 1 1 1 8121900 0 2527700 5594200 9227 1115 9601 39221;39222 32742 32742 1 0 1138300 1085000 LVEQLKEER LGSEGKVEEAQGMMKLVEQLKEERELLRST AQGMMKLVEQLKEERELLRSTTSTIESFAA K L V E R E 0 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 9 1 1142.6295 O95232 O95232 161 169 LUC7L3 Luc7-like protein 3 yes yes 2 6.2232E-05 152.47 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 1 4 58383000 0 4147000 54236000 9228 312 9602 39223;39224;39225;39226;39227 32743;32744;32745;32746 32743 4 0 1376300 9051900 LVESDAEAEAVR KANPHNYDAWFDYLRLVESDAEAEAVREVY YLRLVESDAEAEAVREVYERAIANVPPIQE R L V V R E 3 1 0 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1287.6307 Q9BZJ0 Q9BZJ0 500 511 CRNKL1 Crooked neck-like protein 1 yes yes 2 0.0006009 123.75 By MS/MS By MS/MS 3 0 2 1 1 19732000 0 6044100 13688000 9229 1944 9603 39228;39229 32747;32748 32748 2 0 2576600 2654800 LVESLPQEIK IKNYIQGINLVQAKKLVESLPQEIKANVAK VQAKKLVESLPQEIKANVAKAEAEKIKAAL K L V I K A 0 0 0 0 0 1 2 0 0 1 2 1 0 0 1 1 0 0 0 1 0 0 10 0 1154.6547 P52815 P52815 164 173 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 2 0.021869 81.95 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 69909000 0 21569000 48340000 9230 913 9604 39230;39231;39232 32749;32750 32749 2 0 12385000 7989100 LVETLEDQELK EELRQHAACKLDLQKLVETLEDQELKENVE DLQKLVETLEDQELKENVEIICNLQQLITQ K L V L K E 0 0 0 1 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1315.6871 O95239;Q2VIQ3 O95239 450 460 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.0021162 108.67 By MS/MS 1.5 0.5 1 1 2 11229000 0 0 11229000 9231 314 9605 39233;39234 32751 32751 1 0 0 2477000 LVEVDSGR YEEEINETRRKHETRLVEVDSGRQIEYEYK RRKHETRLVEVDSGRQIEYEYKLAQALHEM R L V G R Q 0 1 0 1 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 8 0 873.4556 P20700 P20700 227 234 LMNB1 Lamin-B1 yes yes 2 0.000622 127.31 By MS/MS By MS/MS 4 0.894 2 1 2 3 2 710590000 0 147870000 562730000 9232 619 9606 39235;39236;39237;39238;39239 32752;32753;32754;32755 32752 4 0 62187000 108500000 LVEVDSSR FEEEVRETRRRHERRLVEVDSSRQQEYDFK RRRHERRLVEVDSSRQQEYDFKMAQALEEL R L V S R Q 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 8 0 903.46616 Q03252 Q03252 241 248 LMNB2 Lamin-B2 yes yes 2 0.00069373 126.28 By matching By MS/MS 2.5 0.5 1 1 1 1 57749000 0 953430 56795000 9233 1156 9607 39240;39241 32756 32756 1 0 429340 11016000 LVEVPNDGGPLGIHVVPFSAR GLEHIPNFSLDDMVKLVEVPNDGGPLGIHV DGGPLGIHVVPFSARGGRTLGLLVKRLEKG K L V A R G 1 1 1 1 0 0 1 3 1 1 2 0 0 1 3 1 0 0 0 4 0 0 21 0 2172.1691 Q8TEW0 Q8TEW0 274 294 PARD3 Partitioning defective 3 homolog yes yes 3 0.00011027 73.783 By MS/MS By matching 2.5 0.5 1 1 1 1 4139100 0 1767300 2371800 9234 1668 9608 39242;39243 32757 32757 1 0 795840 460020 LVFDGLR RETQTECEWTVDTSKLVFDGLRKKVTAMQL EWTVDTSKLVFDGLRKKVTAMQLYECQLID K L V L R K 0 1 0 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 1 0 0 7 0 818.46504 P15924 P15924 1966 1972 DSP Desmoplakin yes yes 2 0.0091427 122.15 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44458000 0 10530000 33928000 9235 572 9609 39244;39245;39246 32758;32759 32759 2 0 5146900 7324800 LVFLGEQSVGK MSTGGDFGNPLRKFKLVFLGEQSVGKTSLI RKFKLVFLGEQSVGKTSLITRFMYDSFDNT K L V G K T 0 0 0 0 0 1 1 2 0 0 2 1 0 1 0 1 0 0 0 2 0 0 11 0 1175.655 P20340;Q9NRW1 P20340 16 26 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B yes no 2 0.0012828 111.46 By MS/MS By MS/MS 8.5 1.5 2 2 2 2 29763000 0 4942400 24821000 9236 615 9610 39247;39248;39249;39250 32760;32761;32762;32763 32762 4 0 10465000 17135000 LVFLGLDNAGK SSVLQFLGLYKKSGKLVFLGLDNAGKTTLL KSGKLVFLGLDNAGKTTLLHMLKDDRLGQH K L V G K T 1 0 1 1 0 0 0 2 0 0 3 1 0 1 0 0 0 0 0 1 0 0 11 0 1145.6445 Q9NR31;Q9Y6B6 Q9NR31 28 38 SAR1A;SAR1B GTP-binding protein SAR1a;GTP-binding protein SAR1b yes no 2 0.00016767 138.4 By matching By MS/MS By MS/MS 7 0 3 1 1 1 29372000 1460300 7871700 20040000 9237 2039 9611 39251;39252;39253 32764;32765 32764 2 3147200 4520000 3556000 LVFSNVNLK ACSDRPTVIYSSNHKLVFSNVNLKEVNYMC YSSNHKLVFSNVNLKEVNYMCPLNSDGYPD K L V L K E 0 0 2 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 0 2 0 0 9 0 1032.5968 Q16531 Q16531 666 674 DDB1 DNA damage-binding protein 1 yes yes 2 0.0039111 98.997 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 46844000 0 14693000 32151000 9238 1387 9612 39254;39255;39256 32766;32767;32768 32768 3 0 6616500 7139200 LVGDFTHDQSISQK KILCCISCNSNIQIKLVGDFTHDQSISQKL KLVGDFTHDQSISQKLMAGFVECLDCEDAE K L V Q K L 0 0 0 2 0 2 0 1 1 1 1 1 0 1 0 2 1 0 0 1 0 0 14 0 1573.7736 Q92621 Q92621 933 946 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0019303 103.21 By MS/MS 2.5 1.12 1 1 1 1 4 119870000 0 0 119870000 9239 1714 9613 39257;39258;39259;39260 32769 32769 1 0 0 25769000 LVGDVDFEGVR VGINRVHDPVTAKPKLVGDVDFEGVRQKAG AKPKLVGDVDFEGVRQKAGYITPVPGGVGP K L V V R Q 0 1 0 2 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 3 0 0 11 0 1204.6088 P13995 P13995 289 299 MTHFD2 Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase yes yes 2 0.0082139 94.692 By matching By MS/MS 3.17 1.57 1 1 2 1 1 3 3 51902000 29117000 0 22785000 9240 555 9614 39261;39262;39263;39264;39265;39266 32770 32770 1 31353000 0 3843700 LVGEIMQETGTR VEKAFHPFIAGPYNRLVGEIMQETGTRINI YNRLVGEIMQETGTRINIPPPSVNRTEIVF R L V T R I 0 1 0 0 0 1 2 2 0 1 1 0 1 0 0 0 2 0 0 1 0 0 12 0 1332.6708 Q00341 Q00341 244 255 HDLBP Vigilin yes yes 2 4.3578E-05 147.75 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 28460000 0 18723000 9737300 9241 1122 9615 39267;39268;39269 32771;32772;32773 32773 3 0 8598300 2200400 LVGGKDFEQPLAISR TQQIDLQGPGPWGFRLVGGKDFEQPLAISR LVGGKDFEQPLAISRVTPGSKAALANLCIG R L V S R V 1 1 0 1 0 1 1 2 0 1 2 1 0 1 1 1 0 0 0 1 0 0 15 1 1628.8886 O00151 O00151 18 32 PDLIM1 PDZ and LIM domain protein 1 yes yes 3 0.0039091 70.654 By MS/MS 6.5 0.5 1 1 2 16808000 0 16808000 0 9242 105 9616 39270;39271 32774 32774 1 0 6314900 0 LVGILDILDEENR HYVDNQDCIDLIEAKLVGILDILDEENRLP AKLVGILDILDEENRLPQPSDQHFTSAVHQ K L V N R L 0 1 1 2 0 0 2 1 0 2 3 0 0 0 0 0 0 0 0 1 0 0 13 0 1497.8039 Q9UM54 Q9UM54 522 534 MYO6 Unconventional myosin-VI yes yes 2 0.00032216 139.43 By MS/MS 2 0 1 1 1424200 0 0 1424200 9243 2198 9617 39272 32775 32775 1 0 0 321840 LVGQGASAVLLDLPNSGGEAQAK ITGGASGLGLATAERLVGQGASAVLLDLPN VLLDLPNSGGEAQAKKLGNNCVFAPADVTS R L V A K K 4 0 1 1 0 2 1 4 0 0 4 1 0 0 1 2 0 0 0 2 0 0 23 0 2194.1594 Q99714 Q99714 30 52 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2 1.161E-77 228.73 By MS/MS By matching 7 0 2 1 1 26182000 0 7979800 18202000 9244 1859 9618 39273;39274 32776 32776 1 0 4582000 3229800 LVGQSIIAYLQK NRKYDEVLHMVRNAKLVGQSIIAYLQKKGY NAKLVGQSIIAYLQKKGYPEVALHFVKDEK K L V Q K K 1 0 0 0 0 2 0 1 0 2 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1331.7813 P53621 P53621 620 631 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.01043 93.649 By MS/MS 2 0 1 1 5859000 0 5859000 0 9245 922 9619 39275 32777 32777 1 0 2638400 0 LVGSVNLFSDENVPR LFLLAQQKVPSKLKKLVGSVNLFSDENVPR LVGSVNLFSDENVPRLVNVLKMAASSVKKD K L V P R L 0 1 2 1 0 0 1 1 0 0 2 0 0 1 1 2 0 0 0 3 0 0 15 0 1644.8471 Q9BQG0 Q9BQG0 232 246 MYBBP1A Myb-binding protein 1A yes yes 2 2.3208E-45 218.07 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 46146000 0 21444000 24703000 9246 1885 9620 39276;39277;39278;39279 32778;32779;32780;32781;32782 32779 5 0 9855200 5482700 LVGTEWR IKAQHPDYSFGELSRLVGTEWRNLETAKKA YSFGELSRLVGTEWRNLETAKKAEYEERAA R L V W R N 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 0 1 0 0 7 0 859.4552 Q86U86 Q86U86 1412 1418 PBRM1 Protein polybromo-1 yes yes 2 0.039993 83.377 By matching By MS/MS 1 0 2 1 1 14229000 2467300 0 11762000 9247 1545 9621 39280;39281 32783 32783 1 2467300 0 2534200 LVHPGVAEVVFVK IVELFCVCGALKRARLVHPGVAEVVFVKKD ARLVHPGVAEVVFVKKDDAITAYKKYNNRC R L V V K K 1 0 0 0 0 0 1 1 1 0 1 1 0 1 1 0 0 0 0 5 0 0 13 0 1392.8129 Q9BY77 Q9BY77 311 323 POLDIP3 Polymerase delta-interacting protein 3 yes yes 3 0.0015564 90.614 By MS/MS By MS/MS 4.8 0.748 2 2 1 2 3 40203000 0 12972000 27231000 9248 1933 9622 39282;39283;39284;39285;39286 32784;32785;32786 32784 3 0 3547400 3965700 LVHVEEPHTETVR VGFYESDVMGRGHARLVHVEEPHTETVRKY ARLVHVEEPHTETVRKYFPETWIWDLVVVN R L V V R K 0 1 0 0 0 0 3 0 2 0 1 0 0 0 1 0 2 0 0 3 0 0 13 0 1544.7947 P01023 P01023 720 732 A2M Alpha-2-macroglobulin yes yes 3 5.6161E-05 129.71 By MS/MS 9 0 1 1 16844000 16844000 0 0 9249 370 9623 39287 32787 32787 1 9454400 0 0 LVIDVIR VKPTDEKLRELKGAKLVIDVIRYEPPHIKK LRELKGAKLVIDVIRYEPPHIKKALQYACG K L V I R Y 0 1 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 7 0 826.52764 Q14683 Q14683 593 599 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0022842 132.72 By matching By MS/MS By MS/MS 1.88 0.781 3 3 2 2 3 3 94578000 2574400 20377000 71627000 9250 1312 9624 39288;39289;39290;39291;39292;39293;39294;39295 32788;32789;32790;32791;32792 32789 5 3018300 9326900 15802000 LVIEEAER SPGKTVTIVVRGSNKLVIEEAERSIHDALC VVRGSNKLVIEEAERSIHDALCVIRCLVKK K L V E R S 1 1 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 8 0 957.51311 P50991 P50991 396 403 CCT4 T-complex protein 1 subunit delta yes yes 2 0.0017016 112.17 By matching By MS/MS 4 0 2 1 1 15590000 5775500 0 9814800 9251 886 9625 39296;39297 32793 32793 1 4505900 0 1603100 LVIFTNQMSIGR EIPRKLRELEAEGYKLVIFTNQMSIGRGKL GYKLVIFTNQMSIGRGKLPAEEFKAKVEAV K L V G R G 0 1 1 0 0 1 0 1 0 2 1 0 1 1 0 1 1 0 0 1 0 0 12 0 1377.7439 Q96T60 Q96T60 213 224 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2 6.9858E-06 159.79 By MS/MS 4.5 0.5 1 1 2 11746000 0 0 11746000 9252 1840 9626 39298;39299 32794 32794 1 0 0 1827700 LVIIESDLER IAEDADRKYEEVARKLVIIESDLERAEERA EVARKLVIIESDLERAEERAELSEGKCAEL K L V E R A 0 1 0 1 0 0 2 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1185.6605 P09493 P09493 169 178 TPM1 Tropomyosin alpha-1 chain yes yes 2 0.012419 87.308 By MS/MS 6 0 1 1 2133300 0 0 2133300 + 9253 485 9627 39300 32795 32795 1 0 0 319170 LVILANNCPALR GYKQTLKMIRQGKAKLVILANNCPALRKSE KAKLVILANNCPALRKSEIEYYAMLAKTGV K L V L R K 2 1 2 0 1 0 0 0 0 1 3 0 0 0 1 0 0 0 0 1 0 0 12 0 1352.7598 P62888 P62888 45 56 RPL30 60S ribosomal protein L30 yes yes 2 1.1256E-33 157.54 By MS/MS By MS/MS 8.4 1.02 1 2 1 1 2 3 110290000 0 2899700 107390000 9254 1046 9628 39301;39302;39303;39304;39305 32796;32797;32798 32797 2 0 1319300 27550000 LVINGNPITIFQER THGKFHGTVKAENGKLVINGNPITIFQERD KLVINGNPITIFQERDPSKIKWGDAGAEYV K L V E R D 0 1 2 0 0 1 1 1 0 3 1 0 0 1 1 0 1 0 0 1 0 0 14 0 1612.8937 P04406 P04406 67 80 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 9.3624E-05 156.58 By MS/MS By MS/MS By MS/MS 4.69 2.44 2 2 2 1 2 4 2 1 7 4 5 137090000 46321000 14169000 76604000 9255 415 9629 39306;39307;39308;39309;39310;39311;39312;39313;39314;39315;39316;39317;39318;39319;39320;39321 32799;32800;32801;32802;32803;32804;32805;32806;32807;32808;32809;32810;32811 32811 12 49333000 5168400 13317000 LVINGNPITIFQERDPSK THGKFHGTVKAENGKLVINGNPITIFQERD NGNPITIFQERDPSKIKWGDAGAEYVVEST K L V S K I 0 1 2 1 0 1 1 1 0 3 1 1 0 1 2 1 1 0 0 1 0 0 18 1 2040.1004 P04406 P04406 67 84 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 3 9.9532E-05 95.873 By MS/MS 6 0 1 1 11144000 0 11144000 0 9256 415 9630 39322 32812 32812 1 0 3857600 0 LVINTEEVFRPYAK GNPIVPLNIRLFLAKLVINTEEVFRPYAKH KLVINTEEVFRPYAKHWLSPLLQLAASENN K L V A K H 1 1 1 0 0 0 2 0 0 1 1 1 0 1 1 0 1 0 1 2 0 0 14 1 1677.909 P78527 P78527 2149 2162 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 1.7352E-06 169.76 By MS/MS By MS/MS 1 0 3 1 2 36547000 0 6189900 30357000 9257 1089 9631 39323;39324;39325 32813;32814;32815 32815 3 0 3025600 6540900 LVISHEEELIPLHK KGPTFRISGVQVNAKLVISHEEELIPLHKS KLVISHEEELIPLHKSIPSDPEERKQYTIP K L V H K S 0 0 0 0 0 0 3 0 2 2 3 1 0 0 1 1 0 0 0 1 0 0 14 0 1655.9247 O14646 O14646 1213 1226 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2;3 0.0019658 102.95 By MS/MS By MS/MS 1.6 0.8 3 1 1 1 4 36349000 0 3358600 32990000 9258 141 9632 39326;39327;39328;39329;39330 32816;32817;32818 32818 3 0 1641600 7102300 LVIVNGDDPLSR HPIKVVEGVKELSKKLVIVNGDDPLSRQAQ SKKLVIVNGDDPLSRQAQENATLLFNIHLR K L V S R Q 0 1 1 2 0 0 0 1 0 1 2 0 0 0 1 1 0 0 0 2 0 0 12 0 1296.7038 P24928 P24928 1020 1031 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.027181 79.986 By MS/MS 1 0 1 1 2113800 0 2113800 0 9259 653 9633 39331 32819 32819 1 0 1033200 0 LVIVSLMELFK MLMEQDPDVAVTVRKLVIVSLMELFKDITP TVRKLVIVSLMELFKDITPSYKIRPLTEAE K L V F K D 0 0 0 0 0 0 1 0 0 1 3 1 1 1 0 1 0 0 0 2 0 0 11 0 1290.7621 Q8WTT2 Q8WTT2 257 267 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.00032718 122.13 By MS/MS 3 0.816 1 1 1 3 2880100 0 0 2880100 9260 1670 9634 39332;39333;39334 32820 32820 1 0 0 599340 LVKPGNQNTQVTEAWNK DVIKAAHLCAEAALRLVKPGNQNTQVTEAW KPGNQNTQVTEAWNKVAHSFNCTPIEGMLS R L V N K V 1 0 3 0 0 2 1 1 0 0 1 2 0 0 1 0 2 1 0 2 0 0 17 1 1925.9959 Q9UQ80 Q9UQ80 156 172 PA2G4 Proliferation-associated protein 2G4 yes yes 2;3 1.854E-12 177.63 By MS/MS By MS/MS 4.38 1.65 1 1 3 3 4 2 2 8 8 1154800000 0 622340000 532440000 9261 2220 9635 39335;39336;39337;39338;39339;39340;39341;39342;39343;39344;39345;39346;39347;39348;39349;39350 32821;32822;32823;32824;32825;32826;32827;32828;32829;32830;32831;32832;32833 32825 13 0 172750000 77979000 LVLADLLEPVK KVSEFNVSSEGSGEKLVLADLLEPVKTSSS SGEKLVLADLLEPVKTSSSLATVKKQLSRV K L V V K T 1 0 0 1 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 2 0 0 11 0 1208.738 Q9BVJ6 Q9BVJ6 85 95 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.0056708 99.653 By MS/MS By MS/MS 3.75 1.98 1 2 1 1 1 1 1 1 7 23168000 0 3071000 20097000 9262 1915 9636 39351;39352;39353;39354;39355;39356;39357;39358 32834;32835 32835 2 0 1382900 4278100 LVLDAFALPLTNLFK YRHEFKSNELWTEIKLVLDAFALPLTNLFK LVLDAFALPLTNLFKATIELCSTHANDASA K L V F K A 2 0 1 1 0 0 0 0 0 0 5 1 0 2 1 0 1 0 0 1 0 0 15 0 1673.9756 P55060 P55060 175 189 CSE1L Exportin-2 yes yes 2 0.0033486 87.001 By MS/MS 2 0.816 1 1 1 3 5134400 0 0 5134400 9263 935 9637 39359;39360;39361 32836 32836 1 0 0 1127100 LVLDPYLLK IGTKMQKTAKVRVTRLVLDPYLLKYFNKRK KVRVTRLVLDPYLLKYFNKRKTYFAHDALQ R L V L K Y 0 0 0 1 0 0 0 0 0 0 4 1 0 0 1 0 0 0 1 1 0 0 9 0 1072.6532 Q9Y2R5 Q9Y2R5 33 41 MRPS17 28S ribosomal protein S17, mitochondrial yes yes 2 0.016447 84.568 By matching By MS/MS 8.75 0.829 2 1 1 1 3 18051000 0 5344900 12706000 9264 2247 9638 39362;39363;39364;39365 32837 32837 1 0 2431700 2945600 LVLDQLR IVPNHEKRAGKLEPRLVLDQLRCNGVLEGI RAGKLEPRLVLDQLRCNGVLEGIRICRQGF R L V L R C 0 1 0 1 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 7 0 855.5178 Q7Z406 Q7Z406 711 717 MYH14 Myosin-14 yes yes 2 0.017096 107.74 By matching By MS/MS By MS/MS 1 0 3 1 1 1 20558000 4820900 10776000 4961300 9265 1531 9639 39366;39367;39368 32838;32839 32838 2 4820900 5267300 1069000 LVLDSIIWAFK HCFPAFLAIPPTQFKLVLDSIIWAFKHTMR TQFKLVLDSIIWAFKHTMRNVADTGLQILF K L V F K H 1 0 0 1 0 0 0 0 0 2 2 1 0 1 0 1 0 1 0 1 0 0 11 0 1303.754 O14980 O14980 873 883 XPO1 Exportin-1 yes yes 2 0.0065011 98.033 By MS/MS 2 0 1 1 7046700 0 0 7046700 9266 158 9640 39369 32840 32840 1 0 0 1592400 LVLDTVNEVSR QQRQKELKKEVMEHRLVLDTVNEVSRALLE MEHRLVLDTVNEVSRALLELVPWRAREGLD R L V S R A 0 1 1 1 0 0 1 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 11 0 1243.6772 Q9UPN3 Q9UPN3 5617 5627 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes yes 2 0.062001 70.942 By MS/MS 1 0 1 1 4639600 0 4639600 0 9267 2214 9641 39370 32841 32841 1 0 2267700 0 LVLELESLR DLKEVLAGKEDSEHRLVLELESLRRQLQQA EDSEHRLVLELESLRRQLQQAAQEQAALRE R L V L R R 0 1 0 0 0 0 2 0 0 0 4 0 0 0 0 1 0 0 0 1 0 0 9 0 1070.6336 O95613 O95613 1361 1369 PCNT Pericentrin yes yes 2 0.04397 73.248 By MS/MS 1 0 1 1 1890700 0 0 1890700 9268 331 9642 39371 32842 32842 1 0 0 407380 LVLEMVHHNTASLEK VAELLKEEFPAWYEKLVLEMVHHNTASLEK LVLEMVHHNTASLEKLVDTAWLEIMTKYAV K L V E K L 1 0 1 0 0 0 2 0 2 0 3 1 1 0 0 1 1 0 0 2 0 0 15 0 1719.8978 Q9UIG0 Q9UIG0 87 101 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3;4 1.632E-107 263.74 By MS/MS 1.25 0.433 3 1 4 101660000 0 0 101660000 9269 2164 9643 39372;39373;39374;39375 32843;32844;32845 32844 3 0 0 21949000 LVLEQVVTSIASVADTAEEK IMVLKLQELIQKGTKLVLEQVVTSIASVAD VVTSIASVADTAEEKFVPYYDLFMPSLKHI K L V E K F 3 0 0 1 0 1 3 0 0 1 2 1 0 0 0 2 2 0 0 4 0 0 20 0 2101.1154 O00410 O00410 507 526 IPO5 Importin-5 yes yes 3 3.917E-08 107.33 By MS/MS 2 0 1 1 3073300 0 0 3073300 9270 119 9644 39376 32846 32846 1 0 0 694500 LVLEVAQHLGESTVR PPILNALEVQGRETRLVLEVAQHLGESTVR LVLEVAQHLGESTVRTIAMDGTEGLVRGQK R L V V R T 1 1 0 0 0 1 2 1 1 0 3 0 0 0 0 1 1 0 0 3 0 0 15 0 1649.9101 P06576 P06576 95 109 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2;3 0.00051829 142.83 By MS/MS By MS/MS 4.4 0.49 3 2 1 4 38189000 0 3838900 34350000 9271 444 9645 39377;39378;39379;39380;39381 32847;32848;32849 32848 3 0 1274000 5401500 LVLIGSNHSLPFLK MAQAGFGVYTKKTTKLVLIGSNHSLPFLKF KLVLIGSNHSLPFLKFATNEAIQRTEAYEY K L V L K F 0 0 1 0 0 0 0 1 1 1 4 1 0 1 1 2 0 0 0 1 0 0 14 0 1536.9028 O15027 O15027 1760 1773 SEC16A Protein transport protein Sec16A yes yes 3 0.0029581 76.357 By MS/MS 1.5 0.5 1 1 2 11759000 0 0 11759000 9272 161 9646 39382;39383 32850;32851 32851 2 0 0 2579300 LVLILNK CPQVEEAIVQSGQKKLVLILNKSDLVPKEN IVQSGQKKLVLILNKSDLVPKENLESWLNY K L V N K S 0 0 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 0 1 0 0 7 0 811.55312 Q9BVP2 Q9BVP2 173 179 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.031827 91.093 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 15374000 0 6376800 8997400 9273 1917 9647 39384;39385;39386 32852;32853 32852 2 0 2342900 1745100 LVLLGESAVGK RPNGPAAGNKICQFKLVLLGESAVGKSSLV CQFKLVLLGESAVGKSSLVLRFVKGQFHEY K L V G K S 1 0 0 0 0 0 1 2 0 0 3 1 0 0 0 1 0 0 0 2 0 0 11 0 1084.6492 P51148;P20339 P51148 24 34 RAB5C;RAB5A Ras-related protein Rab-5C;Ras-related protein Rab-5A no no 2 0.05241 73.233 By matching By MS/MS 7 0 2 1 1 19583000 2450900 0 17133000 9274 889 9648 39387;39388 32854 32854 1 5282300 0 3040100 LVLMSATGDNER LILLKGLQRLNPALRLVLMSATGDNERFSR ALRLVLMSATGDNERFSRYFGGCPVIKVPG R L V E R F 1 1 1 1 0 0 1 1 0 0 2 0 1 0 0 1 1 0 0 1 0 0 12 0 1304.6395 Q7L2E3 Q7L2E3 587 598 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.020865 84.17 By matching By MS/MS 3 0 2 1 1 7244600 1948000 0 5296600 9275 1522 9649 39389;39390 32855 32855 1 2247600 0 1027300 LVLPAPQISDAELQEVVK LQTSGVSEFTKKRSKLVLPAPQISDAELQE PAPQISDAELQEVVKVGQASEIARQTAEES K L V V K V 2 0 0 1 0 2 2 0 0 1 3 1 0 0 2 1 0 0 0 3 0 0 18 0 1948.0881 Q99459 Q99459 295 312 CDC5L Cell division cycle 5-like protein yes yes 2;3 1.4994E-08 141.58 By MS/MS By MS/MS 2.5 1.26 1 3 1 1 2 4 44655000 0 15604000 29051000 9276 1843 9650 39391;39392;39393;39394;39395;39396 32856;32857;32858;32859 32856 3 0 6334100 6387800 LVLSTLSGRPVK AHSLSYAGCNFLRQRLVLSTLSGRPVKIRK RQRLVLSTLSGRPVKIRKIRARDDNPGLRD R L V V K I 0 1 0 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 0 2 0 0 12 1 1268.7816 Q9Y2P8 Q9Y2P8 20 31 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2;3 0.004595 123.88 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 12249000 0 6845700 5403100 9277 2243 9651 39397;39398;39399;39400;39401 32860;32861;32862 32861 3 0 2316500 808360 LVLVGDGGTGK ______________________________ VQFKLVLVGDGGTGKTTFVKRHLTGEFEKK K L V G K T 0 0 0 1 0 0 0 4 0 0 2 1 0 0 0 0 1 0 0 2 0 0 11 0 1014.571 P62826 P62826 13 23 RAN GTP-binding nuclear protein Ran yes yes 2 4.4863E-05 145.72 By MS/MS By MS/MS By MS/MS 6.12 1.62 1 2 5 1 4 3 443890000 15373000 105560000 322950000 9278 1035 9652 39402;39403;39404;39405;39406;39407;39408;39409 32863;32864;32865;32866;32867 32864 5 33133000 59166000 56501000 LVLWDINK IGRLTAYEFAKLKSKLVLWDINKHGLEETA FAKLKSKLVLWDINKHGLEETAAKCKGLGA K L V N K H 0 0 1 1 0 0 0 0 0 1 2 1 0 0 0 0 0 1 0 1 0 0 8 0 999.57532 Q8NBQ5 Q8NBQ5 63 70 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 2 0.011737 91.626 By MS/MS 6 0 1 1 6992000 0 0 6992000 9279 1627 9653 39410 32868 32868 1 0 0 1046100 LVMAGETTNSR PGSTVFTEDCNILLKLVMAGETTNSRGQRL ILLKLVMAGETTNSRGQRLPQKGDVEMLCG K L V S R G 1 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 2 0 0 1 0 0 11 0 1177.5761 P26358 P26358 1197 1207 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00032784 126.82 By MS/MS 1 0 1 1 6860400 0 0 6860400 9280 667 9654 39411 32869 32869 1 0 0 1478200 LVMEEAPESYK KLADMGIAIRVASPKLVMEEAPESYKNVTD ASPKLVMEEAPESYKNVTDVVNTCHDAGIS K L V Y K N 1 0 0 0 0 0 3 0 0 0 1 1 1 0 1 1 0 0 1 1 0 0 11 0 1294.6115 Q9Y3I0 Q9Y3I0 466 476 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.00021316 136.57 By matching By MS/MS By MS/MS 4 0 3 1 1 1 77433000 4062800 5096700 68273000 9281 2276 9655 39412;39413;39414 32870;32871 32871 2 3169700 1691400 11151000 LVNELTEFAK FSQYLQQCPFDEHVKLVNELTEFAKTCVAD DEHVKLVNELTEFAKTCVADESHAGCEKSL K L V A K T 1 0 1 0 0 0 2 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1162.6234 CON__P02769 CON__P02769 66 75 yes yes 2 8.3005E-08 162.97 By MS/MS By MS/MS By MS/MS 5.67 2.89 2 3 3 3 2 2 3 3 3 3 10 8 9 2214400000 1358500000 393240000 462640000 + 9282 45 9656 39415;39416;39417;39418;39419;39420;39421;39422;39423;39424;39425;39426;39427;39428;39429;39430;39431;39432;39433;39434;39435;39436;39437;39438;39439;39440;39441 32872;32873;32874;32875;32876;32877;32878;32879;32880;32881;32882;32883;32884;32885;32886;32887;32888;32889;32890;32891;32892;32893;32894;32895;32896;32897;32898;32899;32900;32901 32878 30 1393100000 788080000 154380000 LVNETFQK VKMIRRVNDEEGIKKLVNETFQKLWFTPTP DEEGIKKLVNETFQKLWFTPTPHNDKEAMT K L V Q K L 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 0 977.5182 Q6KC79 Q6KC79 1905 1912 NIPBL Nipped-B-like protein yes yes 2 0.0049866 104.45 By MS/MS 1 0 1 1 0 0 0 0 9283 1480 9657 39442 32902 32902 1 0 0 0 LVNEVTEFAK FAQYLQQCPFEDHVKLVNEVTEFAKTCVAD EDHVKLVNEVTEFAKTCVADESAENCDKSL K L V A K T 1 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 10 0 1148.6077 CON__P02768-1;P02768 CON__P02768-1 66 75 ALB Serum albumin yes no 2 7.2598E-20 141.48 By MS/MS By matching 6.27 2.95 1 1 2 1 1 1 1 2 3 2 14 1 1666200000 1663200000 2997600 0 + 9284 44 9658 39443;39444;39445;39446;39447;39448;39449;39450;39451;39452;39453;39454;39455;39456;39457 32903;32904;32905;32906;32907;32908;32909;32910;32911;32912;32913;32914;32915;32916 32914 14 1914000000 1363800 0 LVNHFVEEFK TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK DFDNRLVNHFVEEFKRKHKKDISQNKRAVR R L V F K R 0 0 1 0 0 0 2 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 10 0 1260.6503 P0DMV9;P0DMV8 P0DMV9 237 246 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 0.0053017 97.277 By MS/MS 3 0 2 2 26207000 0 26207000 0 9285 501 9659 39458;39459 32917;32918 32917 1 0 11172000 0 LVNHFVEEFKR TAGDTHLGGEDFDNRLVNHFVEEFKRKHKK FDNRLVNHFVEEFKRKHKKDISQNKRAVRR R L V K R K 0 1 1 0 0 0 2 0 1 0 1 1 0 2 0 0 0 0 0 2 0 0 11 1 1416.7514 P0DMV9;P0DMV8 P0DMV9 237 247 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 5.2862E-06 148.19 By MS/MS By MS/MS 3.62 0.696 4 3 1 3 5 220690000 0 92955000 127740000 9286 501 9660 39460;39461;39462;39463;39464;39465;39466;39467 32919;32920;32921;32922;32923;32924 32923 6 0 38690000 23632000 LVNLQHLDLLNNK LSKNKLQQLPADFGRLVNLQHLDLLNNKLV GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK R L V N K L 0 0 3 1 0 1 0 0 1 0 5 1 0 0 0 0 0 0 0 1 0 0 13 0 1532.8675 Q96AG4 Q96AG4 84 96 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 7.3948E-89 257.66 By MS/MS By MS/MS By MS/MS 4.89 1.52 1 1 1 2 3 1 1 6 2 504700000 16394000 454650000 33652000 9287 1751 9661 39468;39469;39470;39471;39472;39473;39474;39475;39476 32925;32926;32927;32928;32929 32928 5 21829000 157190000 4968000 LVNLYGLLHGLQAAVAQQDTLMEAR NGNQLRSPQEEALQRLVNLYGLLHGLQAAV LQAAVAQQDTLMEARFPEGPERREKLCRAN R L V A R F 4 1 1 1 0 3 1 2 1 0 6 0 1 0 0 0 1 0 1 2 0 0 25 0 2723.4429 Q92974 Q92974 742 766 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes yes 3 1.3945E-28 138.93 By MS/MS 2 0 1 1 4750200 0 0 4750200 9288 1735 9662 39477 32930 32930 1 0 0 1073500 LVNNGEKLEFLHK LNPRSVAGGFVYTYKLVNNGEKLEFLHKTP YKLVNNGEKLEFLHKTPVEEVPAAIAPFQG K L V H K T 0 0 2 0 0 0 2 1 1 0 3 2 0 1 0 0 0 0 0 1 0 0 13 1 1539.8409 Q15393 Q15393 930 942 SF3B3 Splicing factor 3B subunit 3 yes yes 3 0.063129 43.813 By MS/MS By matching 3 0.816 1 1 1 1 2 10813000 0 4246800 6565800 9289 1361 9663 39478;39479;39480 32931 32931 1 0 1912400 1174600 LVNTLNTIPSLGQSPGPVVVSNNSSAHGSQR KRPGVTGENSNEVAKLVNTLNTIPSLGQSP PVVVSNNSSAHGSQRTSGPESSMKVTSSIP K L V Q R T 1 1 4 0 0 2 0 3 1 1 3 0 0 0 3 6 2 0 0 4 0 0 31 0 3129.6167 Q7Z3K3 Q7Z3K3 320 350 POGZ Pogo transposable element with ZNF domain yes yes 3 4.0764E-33 111.68 By MS/MS 1.5 0.5 1 1 2 5767500 0 5767500 0 9290 1530 9664 39481;39482 32932 32932 1 0 2664400 0 LVPDLLAIVQR QNISWKKTIVTRFLKLVPDLLAIVQRKKKE RFLKLVPDLLAIVQRKKKEGEEEQAINRQT K L V Q R K 1 1 0 1 0 1 0 0 0 1 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1235.7602 Q9H583 Q9H583 1644 1654 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 4.4069E-06 152.63 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 30509000 0 5973600 24535000 9291 1984 9665 39483;39484;39485;39486 32933;32934;32935;32936;32937 32936 5 0 2919800 5302700 LVPEEETTASENTEITSER SETKGSMQKSKFKYKLVPEEETTASENTEI EETTASENTEITSERQKEGIKLTIRISSRK K L V E R Q 1 1 1 0 0 0 6 0 0 1 1 0 0 0 1 2 4 0 0 1 0 0 19 0 2133.9914 Q96T23 Q96T23 710 728 RSF1 Remodeling and spacing factor 1 yes yes 2 2.3414E-29 125.53 By MS/MS 1 0 1 1 0 0 0 0 9292 1837 9666 39487 32938 32938 1 0 0 0 LVPFATELHER KLGEVSTYTDDLQKKLVPFATELHERLTKD LQKKLVPFATELHERLTKDSEKLKEEIRKE K L V E R L 1 1 0 0 0 0 2 0 1 0 2 0 0 1 1 0 1 0 0 1 0 0 11 0 1310.6983 CON__Q32PJ2;P06727 CON__Q32PJ2 80 90 APOA4 Apolipoprotein A-IV no no 2;3 2.6974E-07 159.58 By MS/MS By MS/MS 6.17 1.46 3 1 1 1 2 4 72624000 15222000 0 57402000 + 9293 81;446 9667 39488;39489;39490;39491;39492;39493 32939;32940;32941;32942;32943 32942 5 10871000 0 8250400 LVPLNQESVEER SGHIDRAFDIIERLKLVPLNQESVEERVAA RLKLVPLNQESVEERVAAFRNFSDEIRHNL K L V E R V 0 1 1 0 0 1 3 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 12 0 1411.7307 Q8N1F7 Q8N1F7 719 730 NUP93 Nuclear pore complex protein Nup93 yes yes 2 0.00049179 125.97 By MS/MS 2.5 0.5 1 1 2 16668000 0 0 16668000 9294 1599 9668 39494;39495 32944 32944 1 0 0 3340600 LVPTAVYQHMK TLFSRKLNGKYRLERLVPTAVYQHMKMHKR RLERLVPTAVYQHMKMHKRILGHLSSVYCV R L V M K M 1 0 0 0 0 1 0 0 1 0 1 1 1 0 1 0 1 0 1 2 0 0 11 0 1285.6853 Q8WWQ0 Q8WWQ0 164 174 PHIP PH-interacting protein yes yes 2 0.02468 81.594 By MS/MS 1 0 1 1 29127000 0 0 29127000 9295 1690 9669 39496 32945 32945 1 0 0 6275800 LVPTGLDFGQEGFTR NEWVVDYALKKRNVRLVPTGLDFGQEGFTR LVPTGLDFGQEGFTRFRERRFHPSLRSTRR R L V T R F 0 1 0 1 0 1 1 3 0 0 2 0 0 2 1 0 2 0 0 1 0 0 15 0 1635.8257 P46087 P46087 539 553 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 2.6782E-17 186.74 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 121870000 0 45625000 76241000 9296 824 9670 39497;39498;39499;39500;39501;39502;39503 32946;32947;32948;32949;32950;32951;32952;32953;32954 32947 9 0 20156000 16412000 LVPVGYGIR VRSIQLDGLVWGASKLVPVGYGIRKLQIQC VWGASKLVPVGYGIRKLQIQCVVEDDKVGT K L V I R K 0 1 0 0 0 0 0 2 0 1 1 0 0 0 1 0 0 0 1 2 0 0 9 0 972.57565 P29692 P29692 233 241 EEF1D Elongation factor 1-delta yes yes 2 0.00046734 123.99 By MS/MS By MS/MS 8 2 2 2 2 2 98455000 0 13658000 84797000 9297 702 9671 39504;39505;39506;39507 32955;32956;32957;32958 32957 4 0 32568000 41062000 LVPVHYDETEAER KKSVKGVSKKYVPPRLVPVHYDETEAEREK PRLVPVHYDETEAEREKKRLERAKRRALSS R L V E R E 1 1 0 1 0 0 3 0 1 0 1 0 0 0 1 0 1 0 1 2 0 0 13 0 1556.7471 Q8NEJ9 Q8NEJ9 176 188 NGDN Neuroguidin yes yes 3 0.017773 60.401 By matching By MS/MS 5.75 1.48 1 1 1 1 1 3 61308000 0 1869200 59439000 9298 1639 9672 39508;39509;39510;39511 32959 32959 1 0 620310 8634500 LVQAFQFTDK VNDLPVGRSVDETLRLVQAFQFTDKHGEVC DETLRLVQAFQFTDKHGEVCPAGWKPGSDT R L V D K H 1 0 0 1 0 2 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 10 0 1195.6237 Q06830 Q06830 159 168 PRDX1 Peroxiredoxin-1 yes yes 2 0.00022839 138.4 By MS/MS By MS/MS By MS/MS 7.11 2.02 1 1 2 2 1 2 4 2 3 196780000 13252000 36821000 146710000 9299 1173 9673 39512;39513;39514;39515;39516;39517;39518;39519;39520 32960;32961;32962;32963;32964;32965 32963 6 10244000 42189000 53829000 LVQAFQYTDK LNDLPVGRSVDETLRLVQAFQYTDKHGEVC DETLRLVQAFQYTDKHGEVCPAGWKPGSET R L V D K H 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 10 0 1211.6186 Q13162 Q13162 231 240 PRDX4 Peroxiredoxin-4 yes yes 2 0.0001182 145.17 By MS/MS By MS/MS By MS/MS 7 0 4 1 1 2 66662000 8657700 12346000 45658000 9300 1227 9674 39521;39522;39523;39524 32966;32967;32968 32967 3 18659000 7089400 8101800 LVQAPLDADGDNVLQEK LNRESSRSHSVFNIKLVQAPLDADGDNVLQ QAPLDADGDNVLQEKEQITISQLSLVDLAG K L V E K E 2 0 1 3 0 2 1 1 0 0 3 1 0 0 1 0 0 0 0 2 0 0 17 0 1823.9265 Q02241 Q02241 309 325 KIF23 Kinesin-like protein KIF23 yes yes 2 5.6694E-07 161.25 By MS/MS 2 0 1 1 15974000 0 0 15974000 9301 1145 9675 39525 32969 32969 1 0 0 3609800 LVQASEELLR VRRFERKGFKLVALKLVQASEELLREHYAE LVALKLVQASEELLREHYAELRERPFYGRL K L V L R E 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 10 0 1156.6452 Q13232 Q13232 57 66 NME3 Nucleoside diphosphate kinase 3 yes yes 2 0.0061882 95.358 By matching By MS/MS 7.5 0.5 1 1 1 1 8921100 1586900 0 7334300 9302 1231 9676 39526;39527 32970 32970 1 3420000 0 1124400 LVQDVANNTNEEAGDGTTTATVLAR KSIDLKDKYKNIGAKLVQDVANNTNEEAGD EEAGDGTTTATVLARSIAKEGFEKISKGAN K L V A R S 4 1 3 2 0 1 2 2 0 0 2 0 0 0 0 0 5 0 0 3 0 0 25 0 2559.2413 P10809 P10809 97 121 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 3 1.0434E-33 173.47 By MS/MS By MS/MS 4 0 2 1 1 40493000 10256000 0 30237000 9303 515 9677 39528;39529 32971;32972 32972 2 8001300 0 4938700 LVQEALEAVPR FTRAILMALRLNESKLVQEALEAVPRGEIE NESKLVQEALEAVPRGEIEVVTSSLPELYV K L V P R G 2 1 0 0 0 1 2 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1223.6874 Q15269 Q15269 774 784 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 2.4051E-09 163.94 By MS/MS By MS/MS 2 0 2 1 1 12574000 0 12574000 0 9304 1352 9678 39530;39531 32973;32974 32973 2 0 5662200 0 LVQGSILK ______________________________ ______________________________ R L V L K K 0 0 0 0 0 1 0 1 0 1 2 1 0 0 0 1 0 0 0 1 0 0 8 0 856.5382 P12004 P12004 6 13 PCNA Proliferating cell nuclear antigen yes yes 2 0.070103 67.981 By matching By MS/MS 6 0 2 1 1 49818000 3285800 0 46533000 9305 531 9679 39532;39533 32975 32975 1 4375000 0 6961800 LVQLLVK PANHAPLQEAAVIPRLVQLLVKAHQDAQRH QEAAVIPRLVQLLVKAHQDAQRHVAAGTQQ R L V V K A 0 0 0 0 0 1 0 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 7 0 811.55312 P14923 P14923 527 533 JUP Junction plakoglobin yes yes 2 0.0059368 126.68 By MS/MS By MS/MS By MS/MS 5.31 3.07 2 1 1 2 1 2 1 1 2 6 3 4 109290000 89341000 5975200 13971000 9306 567 9680 39534;39535;39536;39537;39538;39539;39540;39541;39542;39543;39544;39545;39546 32976;32977;32978;32979;32980;32981;32982;32983;32984;32985 32979 8 92981000 2627300 12950000 LVQLVYFLPSLPADLLSR QEGAVVVLPADSQQRLVQLVYFLPSLPADL LVYFLPSLPADLLSRLSRCCIMGRLSSSLA R L V S R L 1 1 0 1 0 1 0 0 0 0 6 0 0 1 2 2 0 0 1 2 0 0 18 0 2043.1768 Q9NXF1 Q9NXF1 618 635 TEX10 Testis-expressed sequence 10 protein yes yes 2;3 2.3667E-08 143.98 By MS/MS 2.33 0.471 2 1 3 14976000 0 0 14976000 9307 2089 9681 39547;39548;39549 32986;32987;32988 32986 3 0 0 3335800 LVQSPNSYFMDVK HPSPEEEKRKHKKKRLVQSPNSYFMDVKCP KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ R L V V K C 0 0 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 13 0 1526.7439 P42677;Q71UM5 P42677 24 36 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 0.0003305 141.88 By MS/MS By MS/MS By MS/MS 7.83 3.13 2 2 4 4 2 4 6 640770000 9427400 77718000 553620000 9308 804;1516 9682;9683 39550;39551;39552;39553;39554;39555;39556;39557;39558;39559;39560;39561 32989;32990;32991;32992;32993;32994;32995;32996;32997;32998;32999;33000;33001;33002 32996 395 14 6118500 369350000 272870000 LVQTPLTDR AKFNYGFEYLGVQDKLVQTPLTDRCYLTMT LGVQDKLVQTPLTDRCYLTMTQALEARLGG K L V D R C 0 1 0 1 0 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 9 0 1041.5819 Q14204 Q14204 1879 1887 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.002059 105.57 By MS/MS 1 0 1 1 4377800 0 4377800 0 9309 1292 9684 39562 33003 33003 1 0 2139800 0 LVRPEVDVMCTAFHDNEETFLK ECFLQHKDDNPNLPRLVRPEVDVMCTAFHD VMCTAFHDNEETFLKKYLYEIARRHPYFYA R L V L K K 1 1 1 2 1 0 3 0 1 0 2 1 1 2 1 0 2 0 0 3 0 0 22 1 2649.2567 CON__P02768-1;P02768 CON__P02768-1 139 160 ALB Serum albumin yes no 3;4 6.8694E-25 172.61 By MS/MS 7 2.1 1 1 1 2 5 110390000 110390000 0 0 + 9310 44 9685 39563;39564;39565;39566;39567 33004;33005;33006 33005 3 65151000 0 0 LVRPEVDVMCTAFHDNEETFLKK ECFLQHKDDNPNLPRLVRPEVDVMCTAFHD MCTAFHDNEETFLKKYLYEIARRHPYFYAP R L V K K Y 1 1 1 2 1 0 3 0 1 0 2 2 1 2 1 0 2 0 0 3 0 0 23 2 2777.3517 CON__P02768-1;P02768 CON__P02768-1 139 161 ALB Serum albumin yes no 3;4;5 7.0997E-22 159.8 By MS/MS 7.2 2.23 1 1 3 5 353980000 353980000 0 0 + 9311 44 9686 39568;39569;39570;39571;39572 33007;33008;33009;33010;33011 33010 5 202130000 0 0 LVRPPVQVYGIEGR QVRCFSTSVVRPFAKLVRPPVQVYGIEGRY KLVRPPVQVYGIEGRYATALYSAASKQNKL K L V G R Y 0 2 0 0 0 1 1 2 0 1 1 0 0 0 2 0 0 0 1 3 0 0 14 1 1581.8991 P48047 P48047 27 40 ATP5O ATP synthase subunit O, mitochondrial yes yes 3 9.5633E-05 124.42 By MS/MS 7 0 1 1 13848000 0 13848000 0 9312 841 9687 39573 33012 33012 1 0 7951800 0 LVSDGNINSDR ANEEKINAVVETGRRLVSDGNINSDRIQEK TGRRLVSDGNINSDRIQEKVDSIDDRHRKN R L V D R I 0 1 2 2 0 0 0 1 0 1 1 0 0 0 0 2 0 0 0 1 0 0 11 0 1188.5735 Q01082 Q01082 1235 1245 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 2.0823E-07 160.59 By MS/MS By MS/MS 1 0 2 1 1 22660000 0 13733000 8927300 9313 1128 9688 39574;39575 33013;33014 33014 2 0 6712400 1923500 LVSDIIDPVALEIPLSK VNGIENKSLSPDEERLVSDIIDPVALEIPL SDIIDPVALEIPLSKNLLAQISALALQLDS R L V S K N 1 0 0 2 0 0 1 0 0 3 3 1 0 0 2 2 0 0 0 2 0 0 17 0 1821.0499 Q5UIP0 Q5UIP0 2399 2415 RIF1 Telomere-associated protein RIF1 yes yes 2 5.6021E-05 101.6 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 13654000 0 5031600 8622500 9314 1460 9689 39576;39577;39578;39579 33015;33016 33015 2 0 2265800 1808300 LVSDSLSEHEK QAVQKIVSITERALKLVSDSLSEHEKNKNK RALKLVSDSLSEHEKNKNKEGDDKKEGGKD K L V E K N 0 0 0 1 0 0 2 0 1 0 2 1 0 0 0 3 0 0 0 1 0 0 11 0 1242.6092 Q96KR1 Q96KR1 757 767 ZFR Zinc finger RNA-binding protein yes yes 3 0.058299 42.809 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 1 3 12661000 0 5373500 7287700 9315 1806 9690 39580;39581;39582;39583 33017;33018 33018 2 0 2419700 1397100 LVSESSDVLPK SRAVVVKKIETRDGKLVSESSDVLPK____ RDGKLVSESSDVLPK_______________ K L V P K - 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 3 0 0 0 2 0 0 11 0 1172.6289 CON__P05787;P05787 CON__P05787 473 483 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00028758 133.57 By MS/MS By MS/MS 6 2.68 1 1 2 1 2 2 1 2 6 6 1967100000 0 804670000 1162500000 + 9316 49 9691 39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595 33019;33020;33021;33022;33023;33024;33025;33026;33027;33028;33029 33023 11 0 293220000 220780000 LVSIGAEEIVDGNAK NVNKALDFIASKGVKLVSIGAEEIVDGNAK LVSIGAEEIVDGNAKMTLGMIWTIILRFAI K L V A K M 2 0 1 1 0 0 2 2 0 2 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1513.7988 O43707 O43707 126 140 ACTN4 Alpha-actinin-4 yes yes 2 1.5609E-45 221.32 By MS/MS 2 0 2 2 32275000 0 32275000 0 9317 210 9692 39596;39597 33030;33031 33031 2 0 14534000 0 LVSIVDSLHLEMEEALTEQVAR PERAVFRLRKWIIFRLVSIVDSLHLEMEEA LHLEMEEALTEQVARFCLFHSFFVTKKPTS R L V A R F 2 1 0 1 0 1 4 0 1 1 4 0 1 0 0 2 1 0 0 3 0 0 22 0 2481.2785 Q9BQG0 Q9BQG0 456 477 MYBBP1A Myb-binding protein 1A yes yes 3 1.4194E-20 148.56 By MS/MS 2 0 1 1 2741300 0 0 2741300 9318 1885 9693 39598 33032 33032 1 0 0 619470 LVSLTLNLVTR EGPSKAFVNCDENSRLVSLTLNLVTRADEG ENSRLVSLTLNLVTRADEGWYWCGVKQGHF R L V T R A 0 1 1 0 0 0 0 0 0 0 4 0 0 0 0 1 2 0 0 2 0 0 11 0 1227.7551 P01833 P01833 526 536 PIGR Polymeric immunoglobulin receptor;Secretory component yes yes 2 0.017954 85.355 By MS/MS 10 0 1 1 766440 766440 0 0 9319 379 9694 39599 33033 33033 1 1396300 0 0 LVSNHSLHETSSVFVDSLTK HIGGSPFKAKVTGPRLVSNHSLHETSSVFV SLHETSSVFVDSLTKATCAPQHGAPGPGPA R L V T K A 0 0 1 1 0 0 1 0 2 0 3 1 0 1 0 5 2 0 0 3 0 0 20 0 2199.1172 P21333 P21333 2521 2540 FLNA Filamin-A yes yes 3;4 2.8913E-06 93.804 By MS/MS 1 0 2 2 13565000 0 13565000 0 9320 623 9695 39600;39601 33034;33035 33035 2 0 6630200 0 LVSPGSANETSSILVESVTR HIVGSPFKAKVTGQRLVSPGSANETSSILV SANETSSILVESVTRSSTETCYSAIPKASS R L V T R S 1 1 1 0 0 0 2 1 0 1 2 0 0 0 1 5 2 0 0 3 0 0 20 0 2045.0641 O75369 O75369 2476 2495 FLNB Filamin-B yes yes 2 2.1412E-13 130.72 By MS/MS 1 0 1 1 2532100 0 2532100 0 9321 254 9696 39602 33036 33036 1 0 1237600 0 LVSQDNFGFDLPAVEAATK RKAAMRETWLSENQRLVSQDNFGFDLPAVE DNFGFDLPAVEAATKKHEAIETDIAAYEER R L V T K K 3 0 1 2 0 1 1 1 0 0 2 1 0 2 1 1 1 0 0 2 0 0 19 0 2021.0106 Q01082 Q01082 444 462 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 3.7862E-23 191.49 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 38117000 0 21711000 16405000 9322 1128 9697 39603;39604;39605;39606 33037;33038;33039;33040;33041 33038 5 0 10542000 3534800 LVSQDNFGLELAAVEAAVR RKAAMRETWLSENQRLVSQDNFGLELAAVE DNFGLELAAVEAAVRKHEAIETDIVAYSGR R L V V R K 4 1 1 1 0 1 2 1 0 0 3 0 0 1 0 1 0 0 0 3 0 0 19 0 2001.0531 O15020 O15020 447 465 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 1.4104E-08 114.74 By MS/MS 1 0 1 1 1591900 0 0 1591900 9323 160 9698 39607 33042 33042 1 0 0 342990 LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK ALMRLNQLKPGLQYKLVSQTGPVHAPIFTM VEVDGNSFEASGPSKKTAKLHVAVKVLQDM K L V S K K 2 0 1 1 0 1 2 3 1 1 1 1 1 2 3 5 2 0 0 4 0 0 31 0 3187.5496 Q12906 Q12906 420 450 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 7.1179E-20 97.352 By MS/MS 2 0 1 1 11958000 0 0 11958000 9324 1211 9699 39608 33043 33043 1 0 0 2702400 LVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK ALMRLNQLKPGLQYKLVSQTGPVHAPIFTM EVDGNSFEASGPSKKTAKLHVAVKVLQDMG K L V K K T 2 0 1 1 0 1 2 3 1 1 1 2 1 2 3 5 2 0 0 4 0 0 32 1 3315.6445 Q12906 Q12906 420 451 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 1.8354E-15 82.492 By MS/MS 2 0 1 1 8780200 0 0 8780200 9325 1211 9700 39609 33044 33044 1 0 0 1984100 LVSSDPEINTK TVHLEKINKMEWWSRLVSSDPEINTKKINP WWSRLVSSDPEINTKKINPENSKLSDLDSE R L V T K K 0 0 1 1 0 0 1 0 0 1 1 1 0 0 1 2 1 0 0 1 0 0 11 0 1201.619 Q9Y266 Q9Y266 257 267 NUDC Nuclear migration protein nudC yes yes 2 0.010542 90.15 By MS/MS 5 0 1 1 5946100 0 0 5946100 9326 2235 9701 39610 33045 33045 1 0 0 829370 LVSYYYFLR KKPIYINVIRDPIERLVSYYYFLRFGDDYR RDPIERLVSYYYFLRFGDDYRPGLRRRKQG R L V L R F 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 1 0 0 3 1 0 0 9 0 1222.6386 Q7LGA3 Q7LGA3 170 178 HS2ST1 Heparan sulfate 2-O-sulfotransferase 1 yes yes 2 8.8402E-05 143.85 By MS/MS 5 0 1 1 9233300 0 9233300 0 9327 1527 9702 39611 33046 33046 1 0 2380100 0 LVTAVFSR FFVENVSELQLCAIKLVTAVFSRYEKHRQL LQLCAIKLVTAVFSRYEKHRQLILEEIFTS K L V S R Y 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 8 0 891.5178 Q6KC79 Q6KC79 1437 1444 NIPBL Nipped-B-like protein yes yes 2 0.019677 84.568 By MS/MS 1 0 1 1 12958000 0 0 12958000 9328 1480 9703 39612 33047 33047 1 0 0 2792100 LVTEMGTYATQSALSSSRPTK ELKPEEEITVGPVQKLVTEMGTYATQSALS TYATQSALSSSRPTKKEEDRPPLRGFLLDG K L V T K K 2 1 0 0 0 1 1 1 0 0 2 1 1 0 1 4 4 0 1 1 0 0 21 1 2227.1154 P53618 P53618 514 534 COPB1 Coatomer subunit beta yes yes 3 2.8286E-06 89.483 By MS/MS 2 0 1 1 4008100 0 4008100 0 9329 921 9704 39613 33048 33048 1 0 1804900 0 LVTLPVSFAQLK GRLVNLQHLDLLNNKLVTLPVSFAQLKNLK NNKLVTLPVSFAQLKNLKWLDLKDNPLDPV K L V L K N 1 0 0 0 0 1 0 0 0 0 3 1 0 1 1 1 1 0 0 2 0 0 12 0 1314.7911 Q96AG4 Q96AG4 97 108 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.00011614 138.66 By MS/MS By MS/MS By MS/MS 5.65 2.59 1 1 2 2 2 3 2 1 1 2 1 9 7 573970000 10991000 194900000 368080000 9330 1751 9705 39614;39615;39616;39617;39618;39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630 33049;33050;33051;33052;33053;33054;33055;33056;33057;33058 33053 10 14634000 86637000 56901000 LVTMQIWDTAGQER IGADFLTKEVMVDDRLVTMQIWDTAGQERF RLVTMQIWDTAGQERFQSLGVAFYRGADCC R L V E R F 1 1 0 1 0 2 1 1 0 1 1 0 1 0 0 0 2 1 0 1 0 0 14 0 1646.8086 P51149 P51149 56 69 RAB7A Ras-related protein Rab-7a yes yes 2 0.0017093 104.82 By matching By MS/MS 8.2 1.17 2 1 1 1 1 4 19275000 436350 0 18839000 9331 890 9706 39631;39632;39633;39634;39635 33059 33059 1 940430 0 4249200 LVTTGVLK VGENADSQIKLSIKRLVTTGVLKQTKGVGA IKLSIKRLVTTGVLKQTKGVGASGSFRLAK R L V L K Q 0 0 0 0 0 0 0 1 0 0 2 1 0 0 0 0 2 0 0 2 0 0 8 0 829.5273 P07305 P07305 75 82 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0013851 116.54 By MS/MS By MS/MS 6.75 0.829 2 1 1 1 3 180650000 0 21449000 159200000 9332 457 9707 39636;39637;39638;39639 33060;33061;33062 33060 3 0 7424800 24641000 LVVDSHVQYR GNAFHLCREVLRLTKLVVDSHVQYRLGNVD LRLTKLVVDSHVQYRLGNVDAFQLADGLQY K L V Y R L 0 1 0 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 1 3 0 0 10 0 1214.6408 Q6P2Q9 Q6P2Q9 556 565 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 6.5338E-11 168.08 By matching By MS/MS By MS/MS 1.5 0.707 5 2 1 1 3 4 224390000 1518400 83174000 139700000 9333 1490 9708 39640;39641;39642;39643;39644;39645;39646;39647 33063;33064;33065;33066;33067 33065 5 1518400 40556000 30129000 LVVENVDVLTQMR SLMWHISSQVAELKKLVVENVDVLTQMRTS KKLVVENVDVLTQMRTSFDKPDQMAALFKR K L V M R T 0 1 1 1 0 1 1 0 0 0 2 0 1 0 0 0 1 0 0 4 0 0 13 0 1514.8127 Q9Y2A7 Q9Y2A7 869 881 NCKAP1 Nck-associated protein 1 yes yes 2 0.001095 106.29 By MS/MS By MS/MS 2 0 2 1 1 6075400 0 1463700 4611700 9334 2240 9709 39648;39649 33068;33069 33069 0 0 659100 1042200 LVVGGLLSPEEDQSLLLSQFR SKWEGNYLFPRELFKLVVGGLLSPEEDQSL LSPEEDQSLLLSQFREYLDYDDTRYHTMQA K L V F R E 0 1 0 1 0 2 2 2 0 0 6 0 0 1 1 3 0 0 0 2 0 0 21 0 2299.2424 Q9BVI4 Q9BVI4 152 172 NOC4L Nucleolar complex protein 4 homolog yes yes 2;3 2.1949E-22 183 By MS/MS 3.67 0.471 1 2 3 35555000 0 0 35555000 9335 1914 9710 39650;39651;39652 33070;33071 33071 2 0 0 5857400 LVVLGSGGVGK ______________________________ REYKLVVLGSGGVGKSALTVQFVQGIFVEK K L V G K S 0 0 0 0 0 0 0 4 0 0 2 1 0 0 0 1 0 0 0 3 0 0 11 0 984.59678 P61224;P62834 P61224 6 16 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 2 0.0033461 105.52 By MS/MS By MS/MS 8.6 1.36 2 1 2 3 2 50092000 0 10731000 39361000 9336 986 9711 39653;39654;39655;39656;39657 33072;33073;33074;33075 33072 4 0 19841000 28404000 LVVPASQCGSLIGK MTNSTAASRPPVTLRLVVPASQCGSLIGKG RLVVPASQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 2 0 0 0 2 0 0 14 0 1427.7806 Q15366;P57721 Q15366 102 115 PCBP2;PCBP3 Poly(rC)-binding protein 2;Poly(rC)-binding protein 3 yes no 2 0.0034157 94.616 By MS/MS By MS/MS By MS/MS 5.75 0.433 1 3 1 1 2 96392000 5414100 12186000 78792000 9337 1357 9712 39658;39659;39660;39661 33076;33077;33078;33079 33078 4 7208900 4218500 11527000 LVVPATQCGSLIGK MTNSTAASRPPVTLRLVVPATQCGSLIGKG RLVVPATQCGSLIGKGGCKIKEIRESTGAQ R L V G K G 1 0 0 0 1 1 0 2 0 1 2 1 0 0 1 1 1 0 0 2 0 0 14 0 1441.7963 Q15365 Q15365 102 115 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.018949 74.962 By MS/MS By MS/MS 6.5 0.5 1 1 1 1 10969000 0 6205300 4763800 9338 1356 9713 39662;39663 33080;33081 33080 2 0 2148100 845310 LVVSTQTALA AADDKEACFAVEGPKLVVSTQTALA_____ VEGPKLVVSTQTALA_______________ K L V L A - 2 0 0 0 0 1 0 0 0 0 2 0 0 0 0 1 2 0 0 2 0 0 10 0 1001.5757 CON__P02769 CON__P02769 598 607 yes yes 2 0.038295 75.854 By MS/MS 10 0 1 1 93281000 0 93281000 0 + 9339 45 9714 39664 33082 33082 1 0 471930000 0 LVWFDLDLSTKPYR HPAGDNVICGSYDSKLVWFDLDLSTKPYRM KLVWFDLDLSTKPYRMLRHHKKALRAVAFH K L V Y R M 0 1 0 2 0 0 0 0 0 0 3 1 0 1 1 1 1 1 1 1 0 0 14 1 1751.9247 Q14137 Q14137 644 657 BOP1 Ribosome biogenesis protein BOP1 yes yes 3 0.00084087 93.348 By MS/MS 2.5 0.5 1 1 2 7776500 0 0 7776500 9340 1283 9715 39665;39666 33083 33083 1 0 0 1692000 LVWIPSER VIYNPATQADWTAKKLVWIPSERHGFEAAS ADWTAKKLVWIPSERHGFEAASIKEERGDE K L V E R H 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 1 0 0 8 0 998.55492 P35580 P35580 35 42 MYH10 Myosin-10 yes yes 2 4.6611E-06 158.36 By MS/MS By MS/MS 1 0 2 1 1 34836000 0 19549000 15287000 9341 753 9716 39667;39668 33084;33085 33084 2 0 9555300 3293900 LVWVPSDK FINNPLAQADWAAKKLVWVPSDKSGFEPAS ADWAAKKLVWVPSDKSGFEPASLKEEVGEE K L V D K S 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 1 0 1 0 2 0 0 8 0 942.51747 P35579 P35579 31 38 MYH9 Myosin-9 yes yes 2 0.0017273 111.82 By MS/MS By matching 1.5 0.5 1 1 1 1 86818000 0 81138000 5680500 9342 752 9717 39669;39670 33086 33086 1 0 39659000 1283700 LVYAPLSGVGGVLYDK LPEQQKKRCLNEKEKLVYAPLSGVGGVLYD VYAPLSGVGGVLYDKDAVYVDLGGSHVFQD K L V D K D 1 0 0 1 0 0 0 3 0 0 3 1 0 0 1 1 0 0 2 3 0 0 16 0 1649.9029 Q14692 Q14692 334 349 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.044206 60.161 By MS/MS 5 0 1 1 8989000 0 0 8989000 9343 1315 9718 39671 33087 33087 0 0 0 1253800 LVYILNR PKGRAVMISAIEKQKLVYILNRDAAARLTI ISAIEKQKLVYILNRDAAARLTISSPLEAH K L V N R D 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 7 0 889.53854 Q15393 Q15393 140 146 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.017601 106.84 By matching By MS/MS By MS/MS 2.71 1.67 2 2 1 1 1 1 3 3 24297000 947940 13247000 10102000 9344 1361 9719 39672;39673;39674;39675;39676;39677;39678 33088;33089;33090;33091 33089 4 947940 5747600 2065000 LVYLYLMNYAK DVVNCMQTDNLELKKLVYLYLMNYAKSQPD ELKKLVYLYLMNYAKSQPDMAIMAVNSFVK K L V A K S 1 0 1 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 3 1 0 0 11 0 1389.7366 P63010;Q10567 P63010 68 78 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 2 0.0014742 110.31 By MS/MS 2.5 0.5 1 1 2 15129000 0 0 15129000 9345 1057;1193 9720 39679;39680 33092;33093 33092 2 0 0 3383000 LVYVYLVR AVVKNVASKNIEIKKLVYVYLVRYAEEQQD KNIEIKKLVYVYLVRYAEEQQDLALLSIST K L V V R Y 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 2 3 0 0 8 0 1023.6117 O00203;Q13367 O00203 97 104 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 2 0.00043692 129.96 By MS/MS 2.5 0.5 1 1 2 10681000 0 0 10681000 9346 111 9721 39681;39682 33094 33094 1 0 0 2350600 LWDLTTGTTTR DGQFALSGSWDGTLRLWDLTTGTTTRRFVG GTLRLWDLTTGTTTRRFVGHTKDVLSVAFS R L W T R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 5 1 0 0 0 0 11 0 1263.6459 P63244 P63244 89 99 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 1.7759E-09 166.07 By matching By MS/MS By MS/MS 4.29 2.25 2 1 1 2 1 1 4 2 213370000 12163000 78421000 122780000 9347 1068 9722 39683;39684;39685;39686;39687;39688;39689 33095;33096;33097;33098 33098 4 12163000 28771000 18304000 LWDLYLR SYYKPDSPEYKAACKLWDLYLRTRNEFVQK PEYKAACKLWDLYLRTRNEFVQKGEADDED K L W L R T 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 1 1 0 0 0 7 0 977.53345 Q86U86 Q86U86 140 146 PBRM1 Protein polybromo-1 yes yes 2 0.0027018 137.44 By MS/MS 1.5 0.5 1 1 2 6503000 0 0 6503000 9348 1545 9723 39690;39691 33099 33099 1 0 0 1407700 LWDMFDSWR MKSVLASASWDKTVRLWDMFDSWRTKETLA WDKTVRLWDMFDSWRTKETLALTSDALAVT R L W W R T 0 1 0 2 0 0 0 0 0 0 1 0 1 1 0 1 0 2 0 0 0 0 9 0 1254.5492 Q15269 Q15269 527 535 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 0.0005177 135.83 By MS/MS 1.5 0.5 1 1 2 3431900 0 0 3431900 9349 1352 9724 39692;39693 33100 33100 1 0 0 740480 LWEYLLELLR HDIKRITARKDNVIRLWEYLLELLRARRQR DNVIRLWEYLLELLRARRQRLEMNLGLQKI R L W L R A 0 1 0 0 0 0 2 0 0 0 5 0 0 0 0 0 0 1 1 0 0 0 10 0 1346.7598 Q01082 Q01082 509 518 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 3.4866E-05 106.42 By MS/MS 1.5 0.5 1 1 2 989930 0 0 989930 9350 1128 9725 39694;39695 33101;33102 33102 2 0 0 213300 LWFTPTPHNDKEAMTR DEEGIKKLVNETFQKLWFTPTPHNDKEAMT WFTPTPHNDKEAMTRKILNITDVVAACRDT K L W T R K 1 1 1 1 0 0 1 0 1 0 1 1 1 1 2 0 3 1 0 0 0 0 16 1 1942.936 Q6KC79 Q6KC79 1913 1928 NIPBL Nipped-B-like protein yes yes 2 0.01558 89.959 By MS/MS 1 0 1 1 3936800 0 0 3936800 9351 1480 9726 39696 33103 33103 1 0 0 848250 LWGDIYFNPK ADTFGDINYQEFAKRLWGDIYFNPKTRKFT EFAKRLWGDIYFNPKTRKFTKKAPTSSSQR R L W P K T 0 0 1 1 0 0 0 1 0 1 1 1 0 1 1 0 0 1 1 0 0 0 10 0 1251.6288 Q15029 Q15029 343 352 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.00051274 117.04 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 21483000 0 5559900 15923000 9352 1335 9727 39697;39698;39699;39700 33104;33105;33106 33104 3 0 2492900 3598300 LWGLTEMFPER EEDDDEELDETLSERLWGLTEMFPERVRSA LSERLWGLTEMFPERVRSAAGATFDLSLFV R L W E R V 0 1 0 0 0 0 2 1 0 0 2 0 1 1 1 0 1 1 0 0 0 0 11 0 1377.6751 Q9NS69 Q9NS69 48 58 TOMM22 Mitochondrial import receptor subunit TOM22 homolog yes yes 2 6.1033E-06 152.34 By MS/MS 7 0.816 1 1 1 3 6147500 0 0 6147500 9353 2051 9728 39701;39702;39703 33107 33107 1 0 0 964500 LWGWASPLR MTYRLLNLSKVIDKRLWGWASPLRQFSILP KVIDKRLWGWASPLRQFSILPPHILTRLEE R L W L R Q 1 1 0 0 0 0 0 1 0 0 2 0 0 0 1 1 0 2 0 0 0 0 9 0 1084.5818 Q8N3C0 Q8N3C0 1120 1128 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00039905 122.13 By MS/MS 1 0 1 1 1921400 0 0 1921400 9354 1602 9729 39704 33108 33108 1 0 0 413990 LWIANYSLPR QTWYHEGPNSLKVARLWIANYSLPRAMKRL LKVARLWIANYSLPRAMKRLEEARLHKEIP R L W P R A 1 1 1 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 1 0 0 0 10 0 1231.6713 O43172 O43172 179 188 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 0.0004895 135.83 By MS/MS By MS/MS 3.67 1.25 1 2 2 1 3 3 30349000 0 21783000 8565900 9355 189 9730 39705;39706;39707;39708;39709;39710 33109;33110;33111 33110 3 0 7467000 1423300 LWISVAR TLEDEEDSQICTVGRLWISVARYHIEVNRV SQICTVGRLWISVARYHIEVNRVPAGNWVL R L W A R Y 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 7 0 843.49667 Q15029 Q15029 530 536 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0030653 141.55 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 41855000 0 9456500 32398000 9356 1335 9731 39711;39712;39713;39714;39715;39716 33112;33113;33114 33113 3 0 4257400 6993100 LWLESPPGGAPPIFLPSDGQALVLGR ______________________________ PIFLPSDGQALVLGRGPLTQVTDRKCSRTQ R L W G R G 2 1 0 1 0 1 1 4 0 1 5 0 0 1 5 2 0 1 0 1 0 0 26 0 2686.4483 Q96T60 Q96T60 10 35 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2;3 4.1705E-28 141.55 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 11288000 0 5978100 5309500 9357 1840 9732 39717;39718;39719 33115;33116 33116 2 0 1983900 917430 LWNEVLASLK AQQSSLIREDKSNAKLWNEVLASLKDRPAS KSNAKLWNEVLASLKDRPASGSPFQLFLSK K L W L K D 1 0 1 0 0 0 1 0 0 0 3 1 0 0 0 1 0 1 0 1 0 0 10 0 1171.6601 Q96T88 Q96T88 693 702 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.0019912 107.21 By matching By MS/MS By MS/MS 2.5 1.32 2 3 1 1 1 1 1 6 42474000 1566300 4024100 36883000 9358 1841 9733 39720;39721;39722;39723;39724;39725;39726;39727 33117;33118;33119;33120 33119 4 1566300 1812100 7346100 LWNLNNYR KQNPFWWTHQRHDGKLWNLNNYRTDMIQAL HQRHDGKLWNLNNYRTDMIQALGGVEGILE K L W Y R T 0 1 3 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 8 0 1091.5512 Q6P2Q9 Q6P2Q9 1464 1471 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 8.1155E-05 148.28 By MS/MS By MS/MS 1 0 2 1 1 51231000 0 25496000 25735000 9359 1490 9734 39728;39729 33121;33122 33122 2 0 12462000 5544900 LWQTVVGK DGELYASGSEDGTLRLWQTVVGKTYGLWKC SEDGTLRLWQTVVGKTYGLWKCVLPEEDSG R L W G K T 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 8 0 929.53345 Q9Y3F4 Q9Y3F4 291 298 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 0.061956 69.998 By MS/MS By matching 8 1.63 1 1 1 2 1 115530000 0 112780000 2750700 9360 2275 9735 39730;39731;39732 33123 33123 1 0 50043000 6016100 LWSVPDCNLLHTLR NSKMLATACWSGLCKLWSVPDCNLLHTLRG KLWSVPDCNLLHTLRGHNTNVGAIVFHPKS K L W L R G 0 1 1 1 1 0 0 0 1 0 4 0 0 0 1 1 1 1 0 1 0 0 14 0 1722.8876 O43172 O43172 257 270 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 3 0.00796 65.805 By MS/MS 4 0 1 1 2139100 0 2139100 0 9361 189 9736 39733 33124 33124 1 0 709890 0 LWTLVSEQTR LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK VNLDKLWTLVSEQTRVNAAKNKTGAAPIID K L W T R V 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 10 0 1231.6561 P46776 P46776 78 87 RPL27A 60S ribosomal protein L27a yes yes 2 1.0412E-22 193.41 By MS/MS By MS/MS 7.22 1.87 1 1 1 2 1 2 1 3 6 460960000 0 42193000 418770000 9362 827 9737 39734;39735;39736;39737;39738;39739;39740;39741;39742 33125;33126;33127;33128;33129;33130;33131;33132 33130 8 0 24006000 85586000 LWTMPISSVR ESRYSAKTKSFKKIKLWTMPISSVRFVPRD FKKIKLWTMPISSVRFVPRDVPLPVVRVAS K L W V R F 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 2 1 1 0 1 0 0 10 0 1188.6325 Q86U86 Q86U86 1075 1084 PBRM1 Protein polybromo-1 yes yes 2 0.00064115 132.76 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 17457000 0 3651200 13806000 9363 1545 9738 39743;39744;39745 33133;33134 33134 2 0 1784600 3002700 LWVGGLGPNTSLAALAR NPIKIGYGKANPTTRLWVGGLGPNTSLAAL VGGLGPNTSLAALAREFDRFGSIRTIDHVK R L W A R E 3 1 1 0 0 0 0 3 0 0 4 0 0 0 1 1 1 1 0 1 0 0 17 0 1694.9468 Q8NDT2 Q8NDT2 420 436 RBM15B Putative RNA-binding protein 15B yes yes 2 0.0069389 72.496 By MS/MS 2.5 0.5 1 1 2 4600100 0 4600100 0 9364 1635 9739 39746;39747 33135 33135 1 0 2029600 0 LWVGGLGPWVPLAALAR NPIKIGYGKATPTTRLWVGGLGPWVPLAAL VGGLGPWVPLAALAREFDRFGTIRTIDYRK R L W A R E 3 1 0 0 0 0 0 3 0 0 4 0 0 0 2 0 0 2 0 2 0 0 17 0 1775.0246 Q96T37 Q96T37 457 473 RBM15 Putative RNA-binding protein 15 yes yes 2 9.9208E-06 115.57 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 24935000 0 1839400 23096000 9365 1838 9740 39748;39749;39750;39751;39752 33136;33137;33138;33139;33140 33139 5 0 828300 4903900 LWVLETK SPDGKMLLSAGRTIKLWVLETKEVYRHFTG LSAGRTIKLWVLETKEVYRHFTGHATPVSS K L W T K E 0 0 0 0 0 0 1 0 0 0 2 1 0 0 0 0 1 1 0 1 0 0 7 0 887.51165 Q15061 Q15061 192 198 WDR43 WD repeat-containing protein 43 yes yes 2 0.0047267 128.38 By MS/MS By MS/MS 3 0 2 1 1 33099000 0 13076000 20023000 9366 1343 9741 39753;39754 33141;33142 33141 2 0 5574400 3883500 LWYVLLK TCQQLRNKSNEDLHKLWYVLLKERNMLLTL KSNEDLHKLWYVLLKERNMLLTLEQEAKRQ K L W L K E 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 1 1 1 0 0 7 0 933.56878 Q9HD33 Q9HD33 101 107 MRPL47 39S ribosomal protein L47, mitochondrial yes yes 2 0.038022 85.306 By matching By MS/MS 7 0 2 1 1 7486100 0 771720 6714400 9367 2015 9742 39755;39756 33143 33143 1 0 443130 1191400 LYAAIIQLR EQQDNFLKRMSGMIRLYAAIIQLRWPYGNR MSGMIRLYAAIIQLRWPYGNRQEIHPHGLN R L Y L R W 2 1 0 0 0 1 0 0 0 2 2 0 0 0 0 0 0 0 1 0 0 0 9 0 1059.6441 Q53GS7 Q53GS7 576 584 GLE1 Nucleoporin GLE1 yes yes 2 0.00053804 117.62 By MS/MS 2.5 0.5 1 1 2 5863100 0 0 5863100 9368 1425 9743 39757;39758 33144 33144 1 0 0 1170900 LYALGLVPTR RDQFRVRASAALLDKLYALGLVPTRGSLEL ALLDKLYALGLVPTRGSLELCDFVTASSFC K L Y T R G 1 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 1 0 1 1 0 0 10 0 1101.6546 Q9NV31 Q9NV31 83 92 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.00023946 122.52 By matching By MS/MS 7.33 0.471 2 1 1 2 35258000 0 2599800 32658000 9369 2063 9744 39759;39760;39761 33145;33146 33146 2 0 1492800 5521100 LYASILQQK LPGHIQAVYVQNVVKLYASILQQKEQAGEA VQNVVKLYASILQQKEQAGEAEGAQAVTQL K L Y Q K E 1 0 0 0 0 2 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 9 0 1062.6073 O14617 O14617 529 537 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.00045636 123.69 By MS/MS 2 0.816 1 1 1 3 16867000 0 0 16867000 9370 139 9745 39762;39763;39764 33147;33148 33147 2 0 0 3617200 LYDIDVAK DVKANKHQIKQAVKKLYDIDVAKVNTLIRP IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV K L Y A K V 1 0 0 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 1 0 0 8 0 935.4964 P62750 P62750 116 123 RPL23A 60S ribosomal protein L23a yes yes 2 0.0048646 100.19 By MS/MS By MS/MS 7.57 1.4 2 2 1 1 1 2 5 375920000 0 57933000 317990000 9371 1031 9746 39765;39766;39767;39768;39769;39770;39771 33149;33150 33150 2 0 32858000 63081000 LYDLNHNEIGELIR EVVKKIEKKNFPFERLYDLNHNEIGELIRM RLYDLNHNEIGELIRMPKMGKTIHKYVHLF R L Y I R M 0 1 2 1 0 0 2 1 1 2 3 0 0 0 0 0 0 0 1 0 0 0 14 0 1697.8737 O75643 O75643 1153 1166 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 2.8155E-25 204.49 By MS/MS By MS/MS 1 0 3 1 2 88493000 0 10250000 78243000 9372 277 9747 39772;39773;39774 33151;33152;33153 33153 3 0 5010000 16859000 LYDQLLQSYQQK QQLNASLQLAEKFSRLYDQLLQSYQQKMLN FSRLYDQLLQSYQQKMLNTSALLKQLNEQF R L Y Q K M 0 0 0 1 0 4 0 0 0 0 3 1 0 0 0 1 0 0 2 0 0 0 12 0 1525.7777 CON__P17697 CON__P17697 332 343 yes yes 2 1.3357E-12 155.57 By MS/MS 6 0.816 1 1 1 3 23630000 23630000 0 0 + 9373 60 9748 39775;39776;39777 33154;33155;33156 33154 2 31092000 0 0 LYDVPANSMR TSQFLLVSSWDTSVRLYDVPANSMRLKYQH DTSVRLYDVPANSMRLKYQHTGAVLDCAFY R L Y M R L 1 1 1 1 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 10 0 1164.5597 O43684 O43684 41 50 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 0.0004895 135.83 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 24902000 0 6392100 18510000 9374 209 9749 39778;39779;39780;39781 33157;33158 33157 2 0 2212700 2733400 LYEALTPVH DDESLREMVELAAQRLYEALTPVH______ ELAAQRLYEALTPVH_______________ R L Y V H - 1 0 0 0 0 0 1 0 1 0 2 0 0 0 1 0 1 0 1 1 0 0 9 0 1041.5495 Q9UKF6 Q9UKF6 676 684 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 2 0.00068097 132.96 By MS/MS By MS/MS By MS/MS 3 0 3 1 1 1 51602000 26328000 11339000 13935000 9375 2178 9750 39782;39783;39784 33159;33160;33161 33161 3 30377000 4833800 2702700 LYEQLSGK AGTCYQAEWDDYVPKLYEQLSGK_______ WDDYVPKLYEQLSGK_______________ K L Y G K - 0 0 0 0 0 1 1 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 8 0 936.49165 P30086 P30086 180 187 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 0.016621 86.953 By MS/MS 10 0 1 1 1512600 1512600 0 0 9376 710 9751 39785 33162 33162 1 2755700 0 0 LYFKPIGDPVFAR LPDWKRSLPHFRNGKLYFKPIGDPVFARDL GKLYFKPIGDPVFARDLLTFPDNVEHCETV K L Y A R D 1 1 0 1 0 0 0 1 0 1 1 1 0 2 2 0 0 0 1 1 0 0 13 1 1521.8344 A6NHR9 A6NHR9 1799 1811 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.0029346 85.274 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 26488000 0 5758000 20730000 9377 15 9752 39786;39787;39788;39789 33163;33164 33164 2 0 2814400 4428200 LYGLLDPSVFHVK LIHKHNLEYPDFYRKLYGLLDPSVFHVKYR RKLYGLLDPSVFHVKYRARFFHLADLFLSS K L Y V K Y 0 0 0 1 0 0 0 1 1 0 3 1 0 1 1 1 0 0 1 2 0 0 13 0 1486.8184 Q9BVI4 Q9BVI4 330 342 NOC4L Nucleolar complex protein 4 homolog yes yes 3 0.010299 67.252 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 13031000 0 4295100 8736100 9378 1914 9753 39790;39791;39792 33165;33166 33166 2 0 1425400 1388300 LYGNDFSQTTISR KLGFTQGDVGLAMGKLYGNDFSQTTISRFE GKLYGNDFSQTTISRFEALNLSFKNMCKLK K L Y S R F 0 1 1 1 0 1 0 1 0 1 1 0 0 1 0 2 2 0 1 0 0 0 13 0 1500.7209 P14859;Q9UKI9;P09086 P14859 316 328 POU2F1;POU2F3;POU2F2 POU domain, class 2, transcription factor 1;POU domain, class 2, transcription factor 3;POU domain, class 2, transcription factor 2 yes no 2 2.1421E-05 161.51 By MS/MS 4 0 1 1 8331500 0 0 8331500 9379 564 9754 39793 33167 33167 1 0 0 1360800 LYGPSSVSFADDFVR SNSTARNVTWKLGSRLYGPSSVSFADDFVR LYGPSSVSFADDFVRSSKQHYNCEHSKINF R L Y V R S 1 1 0 2 0 0 0 1 0 0 1 0 0 2 1 3 0 0 1 2 0 0 15 0 1658.794 P50454 P50454 134 148 SERPINH1 Serpin H1 yes yes 2 0.00015597 151.98 By MS/MS By MS/MS 5 1.1 2 2 1 2 3 48590000 0 6925000 41665000 9380 879 9755 39794;39795;39796;39797;39798 33168;33169;33170;33171 33169 3 0 1934000 6340300 LYGSEAFATDFQDSAAAK EQLSLLDRFTEDAKRLYGSEAFATDFQDSA SEAFATDFQDSAAAKKLINDYVKNGTRGKI R L Y A K K 5 0 0 2 0 1 1 1 0 0 1 1 0 2 0 2 1 0 1 0 0 0 18 0 1890.8636 P01011 P01011 160 177 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 2.4861E-09 155.66 By MS/MS 9 0 1 1 4359300 4359300 0 0 9381 368 9756 39799 33172 33172 1 2446900 0 0 LYHDPNVNGGTELEPVEGNPYR RCGQAWRAATLEGWKLYHDPNVNGGTELEP NGGTELEPVEGNPYRRIWKISCWRMAEDEL K L Y Y R R 0 1 3 1 0 0 3 3 1 0 2 0 0 0 3 0 1 0 2 2 0 0 22 0 2469.1561 P57740 P57740 383 404 NUP107 Nuclear pore complex protein Nup107 yes yes 3 2.1351E-20 136.96 By MS/MS 2 0 1 1 6335700 0 0 6335700 9382 956 9757 39800 33173 33173 1 0 0 1431700 LYHILTPVPPEELR CLGFGICRGIDMEKRLYHILTPVPPEELRT RLYHILTPVPPEELRTVNCLLVGAIAIPHC R L Y L R T 0 1 0 0 0 0 2 0 1 1 3 0 0 0 3 0 1 0 1 1 0 0 14 0 1675.9297 Q5SY16 Q5SY16 620 633 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 0.060812 38.189 By MS/MS 2.5 0.5 1 1 2 6522600 0 0 6522600 9383 1446 9758 39801;39802 33174 33174 1 0 0 1287100 LYHNEVEIEK KDEVVRAQVQLQLFKLYHNEVEIEKLNKEL LQLFKLYHNEVEIEKLNKELASKNKEIEKD K L Y E K L 0 0 1 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1272.635 Q14683 Q14683 228 237 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 9.0925E-08 162.88 By MS/MS By MS/MS 1.86 0.639 2 4 1 3 4 84563000 0 8395700 76167000 9384 1312 9759 39803;39804;39805;39806;39807;39808;39809 33175;33176;33177;33178;33179;33180 33180 6 0 3971400 16806000 LYIGNLNESVTPADLEK ______________________________ IGNLNESVTPADLEKVFAEHKISYSGQFLV K L Y E K V 1 0 2 1 0 0 2 1 0 1 3 1 0 0 1 1 1 0 1 1 0 0 17 0 1874.9626 Q9NZI8 Q9NZI8 4 20 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 3.7131E-37 214.81 By MS/MS By MS/MS By MS/MS 3.83 0.898 3 1 2 1 3 2 133220000 5266100 38482000 89476000 9385 2104 9760 39810;39811;39812;39813;39814;39815 33181;33182;33183;33184;33185 33184 5 6075900 14273000 15979000 LYIGNLSENAAPSDLESIFK ______________________________ LSENAAPSDLESIFKDAKIPVSGPFLVKTG K L Y F K D 2 0 2 1 0 0 2 1 0 2 3 1 0 1 1 3 0 0 1 0 0 0 20 0 2180.1001 O00425 O00425 4 23 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 1.9428E-13 148.41 By MS/MS 3 0 1 1 23450000 0 0 23450000 9386 121 9761 39816 33186 33186 1 0 0 4548200 LYIGNLSPAVTADDLR ______________________________ YIGNLSPAVTADDLRQLFGDRKLPLAGQVL K L Y L R Q 2 1 1 2 0 0 0 1 0 1 3 0 0 0 1 1 1 0 1 1 0 0 16 0 1716.9046 Q9Y6M1 Q9Y6M1 5 20 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 1.7187E-12 177.1 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 45143000 0 20079000 25064000 9387 2315 9762 39817;39818;39819;39820 33187;33188;33189 33187 3 0 8245700 4861200 LYKEELEQTYHAK QALHEMREQHDAQVRLYKEELEQTYHAKLE VRLYKEELEQTYHAKLENARLSSEMNTSTV R L Y A K L 1 0 0 0 0 1 3 0 1 0 2 2 0 0 0 0 1 0 2 0 0 0 13 1 1650.8253 P20700 P20700 259 271 LMNB1 Lamin-B1 yes yes 2;3;4 1.024E-10 181.68 By matching By MS/MS By MS/MS 3.17 1.49 4 4 6 3 5 1 2 4 17 1597700000 6096200 129500000 1462100000 9388 619 9763 39821;39822;39823;39824;39825;39826;39827;39828;39829;39830;39831;39832;39833;39834;39835;39836;39837;39838;39839;39840;39841;39842;39843 33190;33191;33192;33193;33194;33195;33196;33197;33198;33199;33200;33201;33202;33203;33204;33205;33206;33207;33208 33192 19 6756000 55404000 270060000 LYKLELEQTYQAK QALEELRSQHDEQVRLYKLELEQTYQAKLD VRLYKLELEQTYQAKLDSAKLSSDQNDKAA R L Y A K L 1 0 0 0 0 2 2 0 0 0 3 2 0 0 0 0 1 0 2 0 0 0 13 1 1625.8665 Q03252 Q03252 273 285 LMNB2 Lamin-B2 yes yes 2;3 6.3264E-05 150.1 By MS/MS By MS/MS 3.25 0.433 3 1 3 1 24350000 0 17678000 6671800 9389 1156 9764 39844;39845;39846;39847 33209;33210;33211 33209 3 0 7207200 1294000 LYLADPMK PQYQTWEEFSRAAEKLYLADPMKARVVLKY FSRAAEKLYLADPMKARVVLKYRHSDGNLC K L Y M K A 1 0 0 1 0 0 0 0 0 0 2 1 1 0 1 0 0 0 1 0 0 0 8 0 949.49429 P49458 P49458 17 24 SRP9 Signal recognition particle 9 kDa protein yes yes 2 0.026209 79.469 By matching By MS/MS 9.67 0.471 1 2 1 2 158300000 1487400 0 156810000 9390 857 9765 39848;39849;39850 33212;33213 33213 2 2709800 0 266880000 LYLEQLR ELEETAQEKKLRLAKLYLEQLRQQEEEKAE EKKLRLAKLYLEQLRQQEEEKAEARAFEED K L Y L R Q 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 7 0 933.52837 O43818 O43818 85 91 RRP9 U3 small nucleolar RNA-interacting protein 2 yes yes 2 1.2998E-05 163.41 By MS/MS By MS/MS 3 1.22 1 1 2 2 2 90081000 0 23118000 66962000 9391 214 9766 39851;39852;39853;39854 33214;33215 33214 2 0 8073300 12226000 LYLINSPVVR DPVSIIQKYGADALRLYLINSPVVRAENLR ADALRLYLINSPVVRAENLRFKEEGVRDVL R L Y V R A 0 1 1 0 0 0 0 0 0 1 2 0 0 0 1 1 0 0 1 2 0 0 10 0 1172.6917 P41252 P41252 625 634 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 2 0.00033616 133.55 By MS/MS By MS/MS 2 0 2 1 1 11222000 0 4868300 6353600 9392 796 9767 39855;39856 33216;33217 33217 2 0 2192200 1435800 LYLNETFSELR AGTLGTVAGSAAGLKLYLNETFSELRLDSV AGLKLYLNETFSELRLDSVVQWMEHFETWP K L Y L R L 0 1 1 0 0 0 2 0 0 0 3 0 0 1 0 1 1 0 1 0 0 0 11 0 1383.7034 P27708 P27708 1557 1567 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.0009862 114.5 By MS/MS 1 0 1 1 5949600 0 0 5949600 9393 681 9768 39857 33218 33218 1 0 0 1281900 LYLNVLNR GSFSAGGPGKGMFSRLYLNVLNRHHWMYNA GKGMFSRLYLNVLNRHHWMYNATSYHHSYE R L Y N R H 0 1 2 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 1 1 0 0 8 0 1003.5815 Q10713 Q10713 363 370 PMPCA Mitochondrial-processing peptidase subunit alpha yes yes 2 0.00022941 137.44 By matching By MS/MS 4 0 2 1 1 7815900 743710 0 7072200 9394 1195 9769 39858;39859 33219 33219 1 580230 0 1155100 LYLPVQNK SDRLYSEDELPAEFKLYLPVQNKAKQ____ ELPAEFKLYLPVQNKAKQ____________ K L Y N K A 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 0 1 1 0 0 8 0 973.55967 Q9Y6A4 Q9Y6A4 183 190 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.052931 72.234 By matching By MS/MS 7 0 2 1 1 29198000 1986800 0 27212000 9395 2310 9770 39860;39861 33220 33220 1 4281900 0 4828500 LYLVFSK ECLQLADMVSSERHKLYLVFSKEELRKLLQ MVSSERHKLYLVFSKEELRKLLQKLRESSL K L Y S K E 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 1 0 0 1 1 0 0 7 0 868.50584 P57740 P57740 888 894 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.024818 97.068 By MS/MS 2 0 1 1 2937100 0 0 2937100 9396 956 9771 39862 33221 33221 1 0 0 663740 LYLVSDVLYNSSAK SLSILKTPLPKKIARLYLVSDVLYNSSAKV RLYLVSDVLYNSSAKVANASYYRKFFETKL R L Y A K V 1 0 1 1 0 0 0 0 0 0 3 1 0 0 0 3 0 0 2 2 0 0 14 0 1570.8243 O15042 O15042 595 608 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.00062611 117.09 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 20502000 0 7416900 13085000 9397 163 9772 39863;39864;39865 33222;33223 33222 2 0 3324000 2957000 LYNLDVFQYELYNPMALYGSVPVLLAHNPHR DNLRLKVTEGGEPYRLYNLDVFQYELYNPM LYGSVPVLLAHNPHRDLGIFWLNAAETWVD R L Y H R D 2 1 3 1 0 1 1 1 2 0 6 0 1 1 3 1 0 0 4 3 0 0 31 0 3645.8442 Q14697 Q14697 279 309 GANAB Neutral alpha-glucosidase AB yes yes 4 3.5915E-33 111.97 By MS/MS 2 0 1 1 5630200 0 0 5630200 9398 1317 9773 39866 33224 33224 1 0 0 1272300 LYNVVVDTEVTGK DTSATTALELVAGERLYNVVVDTEVTGKKL ERLYNVVVDTEVTGKKLLERGELKRRYTII R L Y G K K 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 2 0 1 4 0 0 13 0 1435.7559 O95347 O95347 549 561 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0041615 72.652 By MS/MS 2 0 1 1 0 0 0 0 9399 321 9774 39867 33225 33225 1 0 0 0 LYNYFYDR EIEIQAHLHHPNILRLYNYFYDRRRIYLIL HHPNILRLYNYFYDRRRIYLILEYAPRGEL R L Y D R R 0 1 1 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 3 0 0 0 8 0 1152.524 Q96GD4 Q96GD4 140 147 AURKB Aurora kinase B yes yes 2 0.0047874 100.45 By MS/MS By MS/MS 6 0 2 1 1 14465000 0 4359700 10105000 9400 1790 9775 39868;39869 33226;33227 33227 1 0 1509200 1511900 LYPAAVDTIVAIMAEGK GANIMCPGLTSPGAKLYPAAVDTIVAIMAE PAAVDTIVAIMAEGKQHALCVGVMKMSAED K L Y G K Q 4 0 0 1 0 0 1 1 0 2 1 1 1 0 1 0 1 0 1 2 0 0 17 0 1760.9383 Q9ULC4 Q9ULC4 123 139 MCTS1 Malignant T-cell-amplified sequence 1 yes yes 2;3 0.0035347 78.763 By matching By MS/MS 7.4 0.49 3 2 1 4 6116200 0 101820 6014300 9401 2188 9776 39870;39871;39872;39873;39874 33228;33229;33230 33230 3 0 58463 1009500 LYPEGLAQLAR LSKEDRAKLFPHCGRLYPEGLAQLARADDY HCGRLYPEGLAQLARADDYEQVKNVADYYP R L Y A R A 2 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 1 0 0 0 11 0 1229.6768 P61421 P61421 247 257 ATP6V0D1 V-type proton ATPase subunit d 1 yes yes 2 0.0027649 107.01 By MS/MS 6 0 1 1 17160000 0 17160000 0 9402 994 9777 39875 33231 33231 1 0 5940300 0 LYPGSVYGR SRQQRKAEIMESIKRLYPGSVYGRLIDLCQ MESIKRLYPGSVYGRLIDLCQPTQKKYQIA R L Y G R L 0 1 0 0 0 0 0 2 0 0 1 0 0 0 1 1 0 0 2 1 0 0 9 0 1010.5185 Q14683 Q14683 510 518 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.00045939 119.29 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 2 2 49483000 2466500 14484000 32532000 9403 1312 9778 39876;39877;39878;39879;39880 33232;33233;33234;33235 33233 4 2971800 6728100 6780800 LYPVLQQSLVR SWAEAVRLGLEGCQRLYPVLQQSLVRAARR GCQRLYPVLQQSLVRAARRRGAAAQP____ R L Y V R A 0 1 0 0 0 2 0 0 0 0 3 0 0 0 1 1 0 0 1 2 0 0 11 0 1314.766 Q5RKV6 Q5RKV6 251 261 EXOSC6 Exosome complex component MTR3 yes yes 2 0.0077987 95.502 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 16195000 0 7749700 8444800 9404 1443 9779 39881;39882;39883 33236;33237;33238 33236 3 0 3660100 1263400 LYQHEINLFK QPQDVVSKYKTLAQKLYQHEINLFKSKTNS TLAQKLYQHEINLFKSKTNSQKGASSTWMK K L Y F K S 0 0 1 0 0 1 1 0 1 1 2 1 0 1 0 0 0 0 1 0 0 0 10 0 1303.6925 Q03701 Q03701 212 221 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 0.00026044 122.96 By MS/MS 2 0 1 1 14303000 0 0 14303000 9405 1157 9780 39884 33239 33239 1 0 0 3232200 LYQLLNLHYPPK FTEFYTTLLGFVNFRLYQLLNLHYPPKLEG NFRLYQLLNLHYPPKLEGQAQAEAKAGEGT R L Y P K L 0 0 1 0 0 1 0 0 1 0 4 1 0 0 2 0 0 0 2 0 0 0 12 0 1497.8344 O00541 O00541 238 249 PES1 Pescadillo homolog yes yes 2;3 0.013699 82.645 By MS/MS 3 0 2 2 5404800 0 5404800 0 9406 127 9781 39885;39886 33240;33241 33241 2 0 2304000 0 LYQQHGAGLFDVTR RILSGRPPLGFLNPRLYQQHGAGLFDVTRG RLYQQHGAGLFDVTRGCHESCLDEEVEGQG R L Y T R G 1 1 0 1 0 2 0 2 1 0 2 0 0 1 0 0 1 0 1 1 0 0 14 0 1603.8107 Q5IS74;O14773 Q5IS74 507 520 TPP1 Tripeptidyl-peptidase 1 yes no 3 0.00034 103.76 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 16902000 0 4731500 12170000 9407 144 9782 39887;39888;39889 33242;33243 33243 2 0 1313000 1697500 LYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD QQKELEKVCNPIITKLYQSAGGMPGGMPGG PSGGASSGPTIEEVD_______________ K L Y V D - 3 0 0 1 0 1 2 12 0 1 1 0 2 1 6 4 1 0 1 1 0 0 37 0 3345.4918 P11142 P11142 610 646 HSPA8 Heat shock cognate 71 kDa protein yes yes 3 0.012778 23.86 By MS/MS By MS/MS By matching 3 0 3 1 1 1 52813000 14947000 15402000 22464000 9408 517 9783 39890;39891;39892 33244;33245 33244 2 17246000 6565700 4357000 LYQTPLELK EKLSLRQRKPDEDMKLYQTPLELKLKHSTV PDEDMKLYQTPLELKLKHSTVHVDELCPLI K L Y L K L 0 0 0 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 9 0 1103.6227 P52948 P52948 1214 1222 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 0.032344 80.455 By MS/MS 2 0 1 1 0 0 0 0 9409 916 9784 39893 33246 33246 1 0 0 0 LYQVEYAFK AGFDRHITIFSPEGRLYQVEYAFKAINQGG FSPEGRLYQVEYAFKAINQGGLTSVAVRGK R L Y F K A 1 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 2 1 0 0 9 0 1159.5914 P60900 P60900 22 30 PSMA6 Proteasome subunit alpha type-6 yes yes 2 0.050022 71.501 By matching By MS/MS 7 0 2 1 1 5974300 1367800 0 4606600 9410 969 9785 39894;39895 33247 33247 1 2947800 0 817410 LYQYPNFAGPHAALANK AVYVPGSKGAPSFVRLYQYPNFAGPHAALA QYPNFAGPHAALANKSFFKADKVTMLWNKK R L Y N K S 4 0 2 0 0 1 0 1 1 0 2 1 0 1 2 0 0 0 2 0 0 0 17 0 1873.9475 Q9BY44 Q9BY44 200 216 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 3 0.01213 50.827 By matching By MS/MS By MS/MS 3.6 0.8 3 1 1 1 3 1 30854000 3320200 20769000 6764500 9411 1932 9786 39896;39897;39898;39899;39900 33248;33249 33248 2 3830700 7226100 1312000 LYRPPPVLDALGR AAEVMGRLMEIYQEKLYRPPPVLDALGRVI EKLYRPPPVLDALGRVISESPPDQWEARCG K L Y G R V 1 2 0 1 0 0 0 1 0 0 3 0 0 0 3 0 0 0 1 1 0 0 13 1 1465.8405 Q92616 Q92616 1209 1221 GCN1L1 Translational activator GCN1 yes yes 3 3.9634E-13 125.61 By MS/MS 1 0 1 1 0 0 0 0 9412 1712 9787 39901 33250 33250 1 0 0 0 LYSEDELPAEFK IHANCRIRRVYFSDRLYSEDELPAEFKLYL SDRLYSEDELPAEFKLYLPVQNKAKQ____ R L Y F K L 1 0 0 1 0 0 3 0 0 0 2 1 0 1 1 1 0 0 1 0 0 0 12 0 1439.682 Q9Y6A4 Q9Y6A4 171 182 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.0097004 94.804 By MS/MS 7 0 1 1 13537000 0 0 13537000 9413 2310 9788 39902 33251 33251 1 0 0 2402100 LYSILGTTLKDEGK GGDTVAIGGVDGNVRLYSILGTTLKDEGKL RLYSILGTTLKDEGKLLEAKGPVTDVAYSH R L Y G K L 0 0 0 1 0 0 1 2 0 1 3 2 0 0 0 1 2 0 1 0 0 0 14 1 1536.8399 O75083 O75083 471 484 WDR1 WD repeat-containing protein 1 yes yes 2;3 2.0124E-12 124.1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 31618000 0 16550000 15069000 9414 241 9789 39903;39904;39905;39906 33252;33253;33254;33255 33253 4 0 5492200 2922600 LYSILQGDSPTK LFENQTPAHVYYRWKLYSILQGDSPTKWRT RWKLYSILQGDSPTKWRTEDFRMFKNGSFW K L Y T K W 0 0 0 1 0 1 0 1 0 1 2 1 0 0 1 2 1 0 1 0 0 0 12 0 1320.6925 O15042 O15042 477 488 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 2.1074E-08 171.85 By MS/MS 2 0 1 1 9624600 0 9624600 0 9415 163 9790 39907 33256 33256 1 0 4334100 0 LYSLALHPNAFK QQEKSPVNTKSLFKRLYSLALHPNAFKRLG FKRLYSLALHPNAFKRLGASLAFNNIYREF R L Y F K R 2 0 1 0 0 0 0 0 1 0 3 1 0 1 1 1 0 0 1 0 0 0 12 0 1372.7503 P78527 P78527 1063 1074 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0042891 82.489 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 38851000 861930 6860500 31128000 9416 1089 9791 39908;39909;39910;39911 33257;33258 33258 2 861930 3353300 6743400 LYSLLFR ______________________________ AAATLTSKLYSLLFRRTSTFALTIIVGVMF K L Y F R R 0 1 0 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 1 0 0 0 7 0 910.52764 Q9UDW1 Q9UDW1 10 16 UQCR10 Cytochrome b-c1 complex subunit 9 yes yes 2 0.0023039 132.94 By MS/MS By MS/MS 10 0 2 1 1 8992400 0 1481100 7511300 9417 2137 9792 39912;39913 33259;33260 33260 2 0 7493000 16428000 LYSPSQIGAFVLMK VRASNGDAWVEAHGKLYSPSQIGAFVLMKM KLYSPSQIGAFVLMKMKETAENYLGHTAKN K L Y M K M 1 0 0 0 0 1 0 1 0 1 2 1 1 1 1 2 0 0 1 1 0 0 14 0 1552.8323 P38646 P38646 160 173 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00059877 117.7 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 28821000 0 14595000 14226000 9418 774 9793 39914;39915;39916;39917 33261;33262;33263 33261 3 0 6101900 2808600 LYSTIRPYLESK VVALAPCADEAAISKLYSTIRPYLESKAHG ISKLYSTIRPYLESKAHGVQKKAYRVLEEV K L Y S K A 0 1 0 0 0 0 1 0 0 1 2 1 0 0 1 2 1 0 2 0 0 0 12 1 1468.7926 Q5JTH9 Q5JTH9 772 783 RRP12 RRP12-like protein yes yes 3 0.02161 64.224 By MS/MS 2 0 1 1 6822900 0 6822900 0 9419 1438 9794 39918 33264 33264 1 0 3072400 0 LYSVSYLLK RTPCEEILVKHVGSRLYSVSYLLKDKGEYT KHVGSRLYSVSYLLKDKGEYTLVVKWGDEH R L Y L K D 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 2 0 0 2 1 0 0 9 0 1084.6168 P21333 P21333 2613 2621 FLNA Filamin-A yes yes 2 0.0027835 102.51 By MS/MS By MS/MS 2 0.816 1 1 1 1 2 14074000 0 1524800 12549000 9420 623 9795 39919;39920;39921 33265;33266 33266 2 0 686630 2683700 LYTLVLTDPDAPSR NRPTSISWDGLDSGKLYTLVLTDPDAPSRK KLYTLVLTDPDAPSRKDPKYREWHHFLVVN K L Y S R K 1 1 0 2 0 0 0 0 0 0 3 0 0 0 2 1 2 0 1 1 0 0 14 0 1559.8195 P30086 P30086 63 76 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 0.00060801 143.24 By MS/MS 7 0 1 1 5037100 0 0 5037100 9421 710 9796 39922 33267 33267 1 0 0 893800 LYTLVTYVPVTTFK RLSRKRNEDEDSPNKLYTLVTYVPVTTFKN KLYTLVTYVPVTTFKNLQTVNVDEN_____ K L Y F K N 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 4 0 2 3 0 0 14 0 1643.9174 P62899 P62899 102 115 RPL31 60S ribosomal protein L31 yes yes 2;3 0.00038577 135.99 By MS/MS By MS/MS By MS/MS 7.71 1.93 1 1 2 1 6 3 3 2 8 7 1864200000 18119000 980340000 865750000 9422 1048 9797 39923;39924;39925;39926;39927;39928;39929;39930;39931;39932;39933;39934;39935;39936;39937;39938;39939 33268;33269;33270;33271;33272;33273;33274;33275;33276;33277;33278;33279;33280;33281;33282;33283;33284 33272 17 15556000 458140000 148730000 LYTVCDVAMNIIMSK TKDAQGPDDAKMNEKLYTVCDVAMNIIMSK LYTVCDVAMNIIMSKSTTYSLESPKDPVLP K L Y S K S 1 0 1 1 1 0 0 0 0 2 1 1 2 0 0 1 1 0 1 2 0 0 15 0 1756.8562 Q9NTI5 Q9NTI5 1065 1079 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.00028666 126.76 By MS/MS 1 0 1 1 4516700 0 0 4516700 9423 2053 9798 39940 33285 33285 1 0 0 973190 LYTVEYLSNMVGGR ICLVNDPRPQHKYNKLYTVEYLSNMVGGRK KLYTVEYLSNMVGGRKTLYNNQPIDFLKKM K L Y G R K 0 1 1 0 0 0 1 2 0 0 2 0 1 0 0 1 1 0 2 2 0 0 14 0 1600.7919 Q13867 Q13867 283 296 BLMH Bleomycin hydrolase yes yes 2 2.2933E-07 169.65 By MS/MS By matching 5.2 3.82 2 1 1 1 4 1 11659000 10151000 0 1507200 9424 1272 9799 39941;39942;39943;39944;39945 33286;33287;33288 33288 3 8453800 0 324750 LYVGSLHFNITEDMLR AMANNLQKGSAGPMRLYVGSLHFNITEDML YVGSLHFNITEDMLRGIFEPFGRIESIQLM R L Y L R G 0 1 1 1 0 0 1 1 1 1 3 0 1 1 0 1 1 0 1 1 0 0 16 0 1906.9611 Q14498;Q86U06 Q14498 252 267 RBM39;RBM23 RNA-binding protein 39;Probable RNA-binding protein 23 yes no 3 0.0047392 62.377 By MS/MS 2.5 1.12 1 1 1 1 4 7102000 0 0 7102000 9425 1302 9800 39946;39947;39948;39949 33289 33289 1 0 0 1396200 LYVHEAVK QAATGFLVDPVRNQRLYVHEAVKAGVVGPE DPVRNQRLYVHEAVKAGVVGPELHEQLLSA R L Y V K A 1 0 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 1 2 0 0 8 0 957.52837 Q15149 Q15149 3544 3551 PLEC Plectin yes yes 2 0.03878 75.738 By MS/MS 1 0 1 1 4356000 0 4356000 0 9426 1348 9801 39950 33290 33290 1 0 2129100 0 LYVPVKEYPDFNFVGR ELPDAVGPIVQLQEKLYVPVKEYPDFNFVG YVPVKEYPDFNFVGRILGPRGLTAKQLEAE K L Y G R I 0 1 1 1 0 0 1 1 0 0 1 1 0 2 2 0 0 0 2 3 0 0 16 1 1941.9989 Q96PU8 Q96PU8 86 101 QKI Protein quaking yes yes 3 0.0029053 68.944 By MS/MS 6 0 1 1 4389400 0 4389400 0 9427 1820 9802 39951 33291 33291 1 0 1519500 0 LYYFQYPCYQEGLR LARHSNVNLTIFTARLYYFQYPCYQEGLRS RLYYFQYPCYQEGLRSLSQEGVAVEIMDYE R L Y L R S 0 1 0 0 1 2 1 1 0 0 2 0 0 1 1 0 0 0 4 0 0 0 14 0 1898.8662 Q9NRW3 Q9NRW3 123 136 APOBEC3C DNA dC->dU-editing enzyme APOBEC-3C yes yes 2 0.00057918 140.3 By MS/MS 7 0 1 1 3807500 0 0 3807500 9428 2046 9803 39952 33292 33292 1 0 0 675610 MAACIAAGHWAAMGLGR ______________________________ ACIAAGHWAAMGLGRSFQAARTLLPPPASI - M A G R S 6 1 0 0 1 0 0 3 1 1 1 0 2 0 0 0 0 1 0 0 0 0 17 0 1742.8167 P49406 P49406 1 17 MRPL19 39S ribosomal protein L19, mitochondrial yes yes 2 0.072848 42.001 By MS/MS 2.5 1.12 1 1 1 1 4 15681000 0 0 15681000 9429 855 9804 39953;39954;39955;39956 33293 33293 1 0 0 3318300 MAAHTMGNATVGR DAASYICEAAFDEVKMAAHTMGNATVGRRY VKMAAHTMGNATVGRRYLWLKDCKINLASK K M A G R R 3 1 1 0 0 0 0 2 1 0 0 0 2 0 0 0 2 0 0 1 0 0 13 0 1315.6125 P42166 P42166 638 650 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 6.1975E-05 128.1 By matching By MS/MS By MS/MS 2.75 1.39 1 3 3 1 2 1 5 58556000 11993000 1431700 45131000 9430 798 9805;9806 39957;39958;39959;39960;39961;39962;39963;39964 33294;33295;33296;33297 33296 393 4 13298000 610320 8851900 MAALDSLSLFTSLGLSEQK ______________________________ DSLSLFTSLGLSEQKARETLKNSALSAQLR - M A Q K A 2 0 0 1 0 1 1 1 0 0 5 1 1 1 0 4 1 0 0 0 0 0 19 0 2010.0343 P47897 P47897 1 19 QARS Glutamine--tRNA ligase yes yes 2 0.021277 40.377 By MS/MS 6 0 1 1 14635000 0 0 14635000 9431 838 9807 39965 33298 33298 414 1 0 0 2189500 MADEAILQER CREKEREEIARQAAKMADEAILQERERGGP RQAAKMADEAILQERERGGPEEGVRGGHPP K M A E R E 2 1 0 1 0 1 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1174.5652 Q9HCD5 Q9HCD5 316 325 NCOA5 Nuclear receptor coactivator 5 yes yes 2 0.0087157 89.886 By MS/MS 5 0 1 1 13307000 0 0 13307000 9432 2010 9808 39966 33299 33299 1 0 0 1856000 MADFHKEEMDDQDKDK QSPKRYKLRDDFEKKMADFHKEEMDDQDKD ADFHKEEMDDQDKDKAKGRKESEFDDEPKF K M A D K A 1 0 0 5 0 1 2 0 1 0 0 3 2 1 0 0 0 0 0 0 0 0 16 2 1980.8193 Q9Y2W1 Q9Y2W1 422 437 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3;4 1.4259E-05 146.2 By MS/MS 1.33 0.471 2 1 3 29345000 0 0 29345000 9433 2252 9809 39967;39968;39969 33300;33301;33302 33301 3 0 0 6375700 MADHWETAPR GKRNIHGRKLKEINKMADHWETAPRHMMRL KEINKMADHWETAPRHMMRLDIRSLLQDAA K M A P R H 2 1 0 1 0 0 1 0 1 0 0 0 1 0 1 0 1 1 0 0 0 0 10 0 1212.5346 P49750 P49750 1983 1992 YLPM1 YLP motif-containing protein 1 yes yes 3 0.015774 65.719 By MS/MS 1 0 1 1 8639100 0 0 8639100 9434 865 9810 39970 33303 33303 1 0 0 1861400 MADIEYR RVDFPSSVRIHLLTKMADIEYRLSVGTNEK VRIHLLTKMADIEYRLSVGTNEKIQLSSLI K M A Y R L 1 1 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 7 0 896.4062 P40937 P40937 305 311 RFC5 Replication factor C subunit 5 yes yes 2 0.0086919 122.79 By matching By MS/MS 6 0 2 1 1 9550800 0 3224700 6326100 9435 787 9811 39971;39972 33304 33304 1 0 1116300 946450 MAEAELVQEGK RKGHILELLTEVTRRMAEAELVQEGKARKT VTRRMAEAELVQEGKARKTNPEIQSTLRKR R M A G K A 2 0 0 0 0 1 3 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1203.5805 P31944 P31944 213 223 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 3.2769E-27 205.14 By MS/MS By matching By MS/MS 6.65 3.14 2 1 2 1 1 1 2 3 4 12 1 4 386920000 364820000 435420 21665000 9436 723 9812;9813 39973;39974;39975;39976;39977;39978;39979;39980;39981;39982;39983;39984;39985;39986;39987;39988;39989 33305;33306;33307;33308;33309;33310;33311;33312;33313;33314;33315 33309 329 10 348140000 348660 19828000 MAEFGPDSGGR ______________________________ MFKRMAEFGPDSGGRVKGVTIVKPIVYGNV R M A G R V 1 1 0 1 0 0 1 3 0 0 0 0 1 1 1 1 0 0 0 0 0 0 11 0 1122.4764 O95619 O95619 5 15 YEATS4 YEATS domain-containing protein 4 yes yes 2 0.00080981 116.3 By MS/MS 7 0 1 1 5007200 0 0 5007200 9437 332 9814 39990 33316 33316 1 0 0 888500 MAEIGEHVAPSEAANSLEQAQAAAER ETIELTEDRRAFAARMAEIGEHVAPSEAAN EAANSLEQAQAAAERLGYPVLVRAAFALGG R M A E R L 8 1 1 0 0 2 5 1 1 1 1 0 1 0 1 2 0 0 0 1 0 0 26 0 2679.2559 P27708 P27708 522 547 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 3 2.3764E-44 187.18 By MS/MS 1 0 1 1 6646600 0 6646600 0 9438 681 9815 39991 33317 33317 1 0 3248700 0 MAEMLVELVR KRCEKAEEKAKEIAKMAEMLVELVRRIEKS KEIAKMAEMLVELVRRIEKSESS_______ K M A V R R 1 1 0 0 0 0 2 0 0 0 2 0 2 0 0 0 0 0 0 2 0 0 10 0 1189.6199 Q9Y605 Q9Y605 110 119 MRFAP1 MORF4 family-associated protein 1 yes yes 2 0.00056515 116.37 By MS/MS 8.5 0.5 1 1 2 11194000 0 0 11194000 9439 2305 9816 39992;39993 33318 33318 1 0 0 2451000 MAFRPGVVDLPEENR KYLLADCNEAFIKIKMAFRPGVVDLPEENR MAFRPGVVDLPEENREAAYNAITLPEEFHD K M A N R E 1 2 1 1 0 0 2 1 0 0 1 0 1 1 2 0 0 0 0 2 0 0 15 1 1728.8617 O60216 O60216 87 101 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2;3 0.00062391 136.38 By MS/MS 3.17 1.77 1 2 1 1 1 6 84445000 0 0 84445000 9440 219 9817 39994;39995;39996;39997;39998;39999 33319;33320;33321 33321 3 0 0 16844000 MAGDETQPTR LLEFFKQVGEVKFVRMAGDETQPTRFAFVE VKFVRMAGDETQPTRFAFVEFADQNSVPRA R M A T R F 1 1 0 1 0 1 1 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 10 0 1104.487 Q8WXA9 Q8WXA9 98 107 SREK1 Splicing regulatory glutamine/lysine-rich protein 1 yes yes 2 0.012419 87.308 By MS/MS 3 0 1 1 763440 0 0 763440 9441 1693 9818 40000 33322 33322 1 0 0 148070 MAGDPVANVR GQDITTKHMLPTVLRMAGDPVANVRFNVAK PTVLRMAGDPVANVRFNVAKSLQKIGPILD R M A V R F 2 1 1 1 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 2 0 0 10 0 1028.5073 P30153 P30153 528 537 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 2 0.015839 89.698 By MS/MS 4 0 1 1 0 0 0 0 9442 712 9819 40001 33323 33323 1 0 0 0 MAGIEITEEMTMEQLEAMTGGEQLK GKSFDLLILKEVVQKMAGIEITEEMTMEQL TMEQLEAMTGGEQLKAEGGYFGQIRNTKKS K M A L K A 2 0 0 0 0 2 6 3 0 2 2 1 4 0 0 0 3 0 0 0 0 0 25 0 2769.2581 Q8NI27 Q8NI27 686 710 THOC2 THO complex subunit 2 yes yes 3 0.038875 24.459 By MS/MS 1.5 0.5 1 1 2 4710400 0 0 4710400 9443 1647 9820 40002;40003 33324 33324 1 0 0 1044100 MAILQIMK RQVSDVQKRVQVDVKMAILQIMKELNKRGR RVQVDVKMAILQIMKELNKRGRVLVNDAQK K M A M K E 1 0 0 0 0 1 0 0 0 2 1 1 2 0 0 0 0 0 0 0 0 0 8 0 946.53438 Q13263 Q13263 297 304 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.0017662 111.28 By MS/MS By MS/MS 4.21 2.43 2 2 2 2 2 2 1 1 7 7 160000000 0 42045000 117960000 9444 1235 9821 40004;40005;40006;40007;40008;40009;40010;40011;40012;40013;40014;40015;40016;40017 33325;33326;33327;33328;33329;33330;33331;33332;33333;33334;33335;33336 33328 12 0 16675000 23534000 MAIMVQSPMFDGK SCKKCSESIPKDSLRMAIMVQSPMFDGKVP LRMAIMVQSPMFDGKVPHWYHFSCFWKVGH R M A G K V 1 0 0 1 0 1 0 1 0 1 0 1 3 1 1 1 0 0 0 1 0 0 13 0 1453.6768 P09874 P09874 35 47 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 2.5389E-07 168.74 By MS/MS By MS/MS By MS/MS 3.28 2.13 3 7 2 1 1 2 1 1 1 7 10 457170000 3442600 103420000 350310000 9445 492 9822;9823 40018;40019;40020;40021;40022;40023;40024;40025;40026;40027;40028;40029;40030;40031;40032;40033;40034;40035 33337;33338;33339;33340;33341;33342;33343;33344;33345;33346;33347;33348;33349;33350;33351;33352;33353;33354 33349 209;210;211 18 4147900 44336000 76500000 MAKPEEVLVVENDQGEVVR YLPMLFKVRLLMVSRMAKPEEVLVVENDQG EEVLVVENDQGEVVREFMKDTDSINLYKNM R M A V R E 1 1 1 1 0 1 4 1 0 0 1 1 1 0 1 0 0 0 0 5 0 0 19 1 2140.0834 O14980 O14980 424 442 XPO1 Exportin-1 yes yes 3 0.00047773 73.432 By MS/MS 2 0 1 1 4691600 0 0 4691600 9446 158 9824 40036 33355 33355 1 0 0 1060200 MALDIEIATYR MARHLREYQDLLNVKMALDIEIATYRKLLE LNVKMALDIEIATYRKLLEGEESRISLPLP K M A Y R K 2 1 0 1 0 0 1 0 0 2 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1294.6591 P08670;P41219 P08670 391 401 VIM;PRPH Vimentin;Peripherin yes no 2 4.5532E-59 229.55 By matching By MS/MS By MS/MS 4 1 1 2 3 4 1 2 7 276590000 1407500 25815000 249370000 9447 476 9825;9826 40037;40038;40039;40040;40041;40042;40043;40044;40045;40046 33356;33357;33358;33359;33360;33361;33362;33363;33364;33365;33366;33367 33359 189 11 1695900 8179300 39986000 MALDIEIATYRK MARHLREYQDLLNVKMALDIEIATYRKLLE NVKMALDIEIATYRKLLEGEESRISLPLPN K M A R K L 2 1 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 1 1422.7541 P08670;P41219 P08670 391 402 VIM;PRPH Vimentin;Peripherin yes no 3 0.040371 53.769 By MS/MS 4 0 1 1 6073700 0 6073700 0 9448 476 9827 40047 33368 33368 189 1 0 2015600 0 MALIQLGSVEEAIQALIELHNHDLGENHHLR GCSVKAFKFFQKDRKMALIQLGSVEEAIQA IELHNHDLGENHHLRVSFSKSTI_______ K M A L R V 3 1 2 1 0 2 4 2 4 3 6 0 1 0 0 1 0 0 0 1 0 0 31 0 3499.7994 O95758 O95758 514 544 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 5 7.3867E-34 119.36 By MS/MS 4 0 1 1 7147700 0 0 7147700 9449 337 9828 40048 33369 33369 1 0 0 1167400 MALIQMGSVEEAVQALIDLHNHDLGENHHLR GGVVKGFKFFQKDRKMALIQMGSVEEAVQA IDLHNHDLGENHHLRVSFSKSTI_______ K M A L R V 3 1 2 2 0 2 3 2 4 2 5 0 2 0 0 1 0 0 0 2 0 0 31 0 3489.7245 P26599 P26599 493 523 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 4;5 6.6236E-86 215.79 By MS/MS 3.29 0.7 1 3 3 7 257110000 0 0 257110000 9450 671 9829;9830 40049;40050;40051;40052;40053;40054;40055 33370;33371;33372;33373;33374;33375 33374 303 6 0 0 43710000 MALLATVLGR RAAYFRQAENGMYIRMALLATVLGRF____ GMYIRMALLATVLGRF______________ R M A G R F 2 1 0 0 0 0 0 1 0 0 3 0 1 0 0 0 1 0 0 1 0 0 10 0 1043.6161 P27708 P27708 2215 2224 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.0095249 88.948 By MS/MS 1.5 0.5 1 1 2 7861800 0 7861800 0 9451 681 9831 40056;40057 33376 33376 1 0 3815900 0 MALNHPYFNDLDNQIK SKMLIYDPAKRISGKMALNHPYFNDLDNQI ALNHPYFNDLDNQIKKM_____________ K M A I K K 1 0 3 2 0 1 0 0 1 1 2 1 1 1 1 0 0 0 1 0 0 0 16 0 1931.92 P06493 P06493 280 295 CDK1 Cyclin-dependent kinase 1 yes yes 2 1.5509E-05 152.4 By MS/MS 6 0 1 1 14007000 0 0 14007000 9452 443 9832 40058 33377 33377 1 0 0 2095600 MALTLLDYLFHR SDMLHISTNCRTAEKMALTLLDYLFHREVQ AEKMALTLLDYLFHREVQAVSNLSGQGKHG K M A H R E 1 1 0 1 0 0 0 0 1 0 4 0 1 1 0 0 1 0 1 0 0 0 12 0 1491.7908 Q8N9N5 Q8N9N5 251 262 BANP Protein BANP yes yes 3 0.0020022 92.866 By MS/MS 3.5 0.5 1 1 2 4439800 0 0 4439800 9453 1618 9833 40059;40060 33378 33378 1 0 0 789060 MAMNYNAK ______________________________ ______________________________ - M A A K D 2 0 2 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 8 0 941.40991 Q9NV96 Q9NV96 1 8 TMEM30A Cell cycle control protein 50A yes yes 2 0.036571 48.761 By MS/MS 10 0 1 1 4706500 0 4706500 0 9454 2065 9834 40061 33379 33379 696;697 1 0 23811000 0 MAPALSGANLTSPR RTAAALAPASLTSARMAPALSGANLTSPRV RMAPALSGANLTSPRVPLSAYERVSGRTSP R M A P R V 3 1 1 0 0 0 0 1 0 0 2 0 1 0 2 2 1 0 0 0 0 0 14 0 1384.7133 Q9UQ35 Q9UQ35 2371 2384 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 3.8881E-36 193.83 By MS/MS By MS/MS 3 0.943 1 1 4 3 6 3 66200000 0 31545000 34656000 9455 2219 9835;9836 40062;40063;40064;40065;40066;40067;40068;40069;40070 33380;33381;33382;33383;33384;33385;33386;33387 33383 709 8 0 13797000 6510500 MAPSAEER NKGRRIAFSSTSLLKMAPSAEERTTIHEMF SSTSLLKMAPSAEERTTIHEMFLSTLDPKT K M A E R T 2 1 0 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 8 0 889.39637 Q9Y305 Q9Y305 251 258 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.0015772 113.89 By MS/MS 5 0 1 1 3518400 0 3518400 0 9456 2256 9837 40071 33388 33388 1 0 906940 0 MAPVITEETTLQLEDIIK NSLLEETLHFDHAVRMAPVITEETTLQLED VITEETTLQLEDIIKQRIRDQAWDDVVRKE R M A I K Q 1 0 0 1 0 1 3 0 0 3 2 1 1 0 1 0 3 0 0 1 0 0 18 0 2043.081 O00566 O00566 413 430 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 2 7.2193E-07 110.38 By MS/MS 2.5 0.5 1 1 2 3479200 0 0 3479200 9457 129 9838 40072;40073 33389 33389 1 0 0 720730 MAPVPLDDSNRPASLTK KMIASDSHRPEVKLKMAPVPLDDSNRPASL PVPLDDSNRPASLTKDRLLASTLVHSVKKE K M A T K D 2 1 1 2 0 0 0 0 0 0 2 1 1 0 3 2 1 0 0 1 0 0 17 1 1810.9247 Q9NYF8 Q9NYF8 551 567 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2;3 5.6846E-05 131.06 By MS/MS By MS/MS 2.78 1.36 3 6 4 3 1 1 8 10 530160000 0 122380000 407780000 9458 2097 9839;9840 40074;40075;40076;40077;40078;40079;40080;40081;40082;40083;40084;40085;40086;40087;40088;40089;40090;40091 33390;33391;33392;33393;33394;33395;33396;33397;33398;33399;33400;33401;33402;33403;33404 33400 699 15 0 53006000 88520000 MAPYQGPDAVPGALDYK RRELPPDQAEYCIARMAPYQGPDAVPGALD PYQGPDAVPGALDYKSFSTALYGESDL___ R M A Y K S 3 0 0 2 0 1 0 2 0 0 1 1 1 0 3 0 0 0 2 1 0 0 17 0 1791.8502 O43707 O43707 883 899 ACTN4 Alpha-actinin-4 yes yes 2 1.4079E-05 144.27 By MS/MS By MS/MS 1.83 0.687 2 3 1 3 3 133420000 0 80493000 52923000 9459 210 9841;9842 40092;40093;40094;40095;40096;40097 33405;33406;33407;33408;33409 33409 87 5 0 36416000 11780000 MAQALEELR LVEVDSSRQQEYDFKMAQALEELRSQHDEQ QEYDFKMAQALEELRSQHDEQVRLYKLELE K M A L R S 2 1 0 0 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1059.5383 Q03252 Q03252 256 264 LMNB2 Lamin-B2 yes yes 2 2.1392E-05 151.04 By MS/MS By MS/MS By MS/MS 2.9 1.04 1 2 5 1 1 2 2 6 164880000 9768600 27014000 128100000 9460 1156 9843;9844 40098;40099;40100;40101;40102;40103;40104;40105;40106;40107 33410;33411;33412;33413;33414;33415;33416;33417;33418;33419 33411 554 9 11423000 11516000 23041000 MAQHLQAAVAFVEQGHVR SFCRRRLPTVLLKLRMAQHLQAAVAFVEQG HLQAAVAFVEQGHVRVGPDVVTDPAFLVTR R M A V R V 4 1 0 0 0 3 1 1 2 0 1 0 1 1 0 0 0 0 0 3 0 0 18 0 1991.0159 Q9NV31 Q9NV31 120 137 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 3;4 3.157E-09 123.36 By MS/MS 7.8 0.748 2 2 1 5 40714000 0 0 40714000 9461 2063 9845 40108;40109;40110;40111;40112 33420;33421;33422 33422 3 0 0 7005100 MAQPIVAFTVVEVAKPNIGENWPTR WQSEYGGVVFGGWARMAQPIVAFTVVEVAK VEVAKPNIGENWPTRVRADVTINLNVRDHI R M A T R V 3 1 2 0 0 1 2 1 0 2 0 1 1 1 3 0 2 1 0 4 0 0 25 1 2766.4527 O60306 O60306 510 534 AQR Intron-binding protein aquarius yes yes 3 1.7427E-05 69.435 By MS/MS 2 0 1 1 5783200 0 0 5783200 9462 225 9846 40113 33423 33423 1 0 0 1306900 MASTFIGNSTAIQELFK NVKVAVCDIPPRGLKMASTFIGNSTAIQEL STFIGNSTAIQELFKRISEQFSAMFRRKAF K M A F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 17 0 1856.9342 Q9BUF5 Q9BUF5 363 379 TUBB6 Tubulin beta-6 chain yes yes 2;3 1.0706E-27 204.49 By MS/MS 4.5 0.5 2 2 4 44527000 0 44527000 0 9463 1905 9847 40114;40115;40116;40117 33424;33425;33426;33427 33424 4 0 12528000 0 MASTFIGNSTAIQELFKR NVKVAVCDIPPRGLKMASTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFSAMFRRKAFL K M A K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 18 1 2013.0353 Q9BUF5 Q9BUF5 363 380 TUBB6 Tubulin beta-6 chain yes yes 2 2.3275E-08 148.68 By MS/MS 5 0 1 1 7351800 0 7351800 0 9464 1905 9848 40118 33428 33428 1 0 1895100 0 MATEVAADALGEEWK EVDDERKLRTFYEKRMATEVAADALGEEWK MATEVAADALGEEWKGYVVRISGGNDKQGF R M A W K G 4 0 0 1 0 0 3 1 0 0 1 1 1 0 0 0 1 1 0 1 0 0 15 0 1619.7501 P62753 P62753 32 46 RPS6 40S ribosomal protein S6 yes yes 2;3 1.3728E-08 174.24 By matching By MS/MS By MS/MS 6.81 1.13 1 7 4 2 2 1 2 13 419590000 1074100 15080000 403430000 9465 1032 9849;9850 40119;40120;40121;40122;40123;40124;40125;40126;40127;40128;40129;40130;40131;40132;40133;40134 33429;33430;33431;33432;33433;33434;33435 33431 491 7 1430100 5220200 63812000 MATEVAADALGEEWKGYVVR EVDDERKLRTFYEKRMATEVAADALGEEWK AADALGEEWKGYVVRISGGNDKQGFPMKQG R M A V R I 4 1 0 1 0 0 3 2 0 0 1 1 1 0 0 0 1 1 1 3 0 0 20 1 2194.0729 P62753 P62753 32 51 RPS6 40S ribosomal protein S6 yes yes 3 7.22E-14 144.68 By MS/MS By matching 6 0 3 2 1 34439000 0 29999000 4440100 9466 1032 9851;9852 40135;40136;40137 33436;33437 33437 491 2 0 10385000 664280 MATNTVYVFAK FIINGSEKVLIAQEKMATNTVYVFAKKDSK AQEKMATNTVYVFAKKDSKYAYTGECRSCL K M A A K K 2 0 1 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 1 2 0 0 11 0 1243.6271 P30876 P30876 200 210 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 0.0073735 96.331 By matching By MS/MS By MS/MS 2 0 3 1 1 1 18522000 3103300 2542300 12877000 9467 715 9853 40138;40139;40140 33438;33439 33439 2 3739100 1144800 2909900 MAVDQDWPSVYPVAAPFKPSAVPLPVR ERPPRRKALPPRTEKMAVDQDWPSVYPVAA VAAPFKPSAVPLPVRMGYPVKKGVPMAKEG K M A V R M 4 1 0 2 0 1 0 0 0 0 1 1 1 1 6 2 0 1 1 5 0 0 27 1 2936.5259 P82673 P82673 60 86 MRPS35 28S ribosomal protein S35, mitochondrial yes yes 3 0.0015327 41.087 By MS/MS 6 0 1 1 2973500 0 2973500 0 9468 1098 9854 40141 33440 33440 1 0 1029300 0 MAVLALLAK KCDSWWAKDSPLETKMAVLALLAKILQIDS SPLETKMAVLALLAKILQIDSSVSFNTSHG K M A A K I 3 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 1 0 0 9 0 928.57796 P78527 P78527 1643 1651 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.02067 81.784 By MS/MS By MS/MS 1 0 2 1 1 9914900 0 1045500 8869500 9469 1089 9855 40142;40143 33441;33442 33442 2 0 511010 1911100 MAVQDAVDALMQK FLKVSSVFKDEATVRMAVQDAVDALMQKAF VRMAVQDAVDALMQKAFNSSSFNSNTFLTR R M A Q K A 3 0 0 2 0 2 0 0 0 0 1 1 2 0 0 0 0 0 0 2 0 0 13 0 1418.6898 P46060 P46060 488 500 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.00034468 127.76 By matching By MS/MS 3 0 2 1 1 14387000 1905100 0 12482000 9470 822 9856 40144;40145 33443 33443 1 2198000 0 2421000 MAVTFIGNSTAIQELFK NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL VTFIGNSTAIQELFKRISEQFTAMFRRKAF K M A F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 17 0 1868.9706 P07437 P07437 363 379 TUBB Tubulin beta chain yes yes 2;3 2.9716E-29 206.58 By MS/MS By MS/MS 4.37 2.09 2 3 3 8 7 2 2 13 14 780280000 0 281760000 498520000 9471 462 9857;9858 40146;40147;40148;40149;40150;40151;40152;40153;40154;40155;40156;40157;40158;40159;40160;40161;40162;40163;40164;40165;40166;40167;40168;40169;40170;40171;40172 33444;33445;33446;33447;33448;33449;33450;33451;33452;33453;33454;33455;33456;33457;33458;33459;33460;33461;33462;33463;33464;33465 33445 177 20 0 80083000 83904000 MAVTFIGNSTAIQELFKR NVKTAVCDIPPRGLKMAVTFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M A K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 1 0 0 18 1 2025.0717 P07437 P07437 363 380 TUBB Tubulin beta chain yes yes 3 1.6306E-17 182.57 By MS/MS By matching 5.38 1.22 2 3 2 1 7 1 92214000 0 83736000 8477700 9472 462 9859;9860 40173;40174;40175;40176;40177;40178;40179;40180 33466;33467;33468;33469;33470;33471;33472 33466 177 7 0 24263000 1182500 MAYVVDLDDEYADTDIPTTLIR KSKAYERNELFLPGRMAYVVDLDDEYADTD DDEYADTDIPTTLIRSKADCPTMEAQTTLT R M A I R S 2 1 0 5 0 0 1 0 0 2 2 0 1 0 1 0 3 0 2 2 0 0 22 0 2528.1992 Q13123 Q13123 237 258 IK Protein Red yes yes 2 9.4553E-20 147.35 By MS/MS 3 0 1 1 2448200 0 0 2448200 9473 1222 9861 40181 33473 33473 1 0 0 474830 MCPQLQQYEMHGPEGLR MGLKAFTNSKIRKPKMCPQLQQYEMHGPEG PQLQQYEMHGPEGLRVGFYESDVMGRGHAR K M C L R V 0 1 0 0 1 3 2 2 1 0 2 0 2 0 2 0 0 0 1 0 0 0 17 0 2072.923 P01023 P01023 688 704 A2M Alpha-2-macroglobulin yes yes 3 0.001192 73.279 By MS/MS 9 0 1 1 4629300 4629300 0 0 9474 370 9862 40182 33474 33474 1 2598500 0 0 MDADGFLPITLIASFHR FSVDNLERDFFLRRKMDADGFLPITLIASF ADGFLPITLIASFHRVQALTTDISLIFAAL K M D H R V 2 1 0 2 0 0 0 1 1 2 2 0 1 2 1 1 1 0 0 0 0 0 17 0 1902.9662 Q6PKG0 Q6PKG0 430 446 LARP1 La-related protein 1 yes yes 3 3.1502E-06 109.35 By MS/MS 2.5 1.12 1 1 1 1 4 13694000 0 0 13694000 9475 1497 9863 40183;40184;40185;40186 33475 33475 1 0 0 2503200 MDAGFFR ______________________________ ______________________________ - M D F R G 1 1 0 1 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 0 7 0 842.37451 Q8IYB3 Q8IYB3 1 7 SRRM1 Serine/arginine repetitive matrix protein 1 yes yes 2 0.014713 92.319 By MS/MS 1.5 0.5 1 1 2 3596200 0 3596200 0 9476 1591 9864 40187;40188 33476 33476 1 0 1648800 0 MDAILTEAIK RAQKQTPMASSPRPKMDAILTEAIKACFQK SPRPKMDAILTEAIKACFQKSGASVVAIRK K M D I K A 2 0 0 1 0 0 1 0 0 2 1 1 1 0 0 0 1 0 0 0 0 0 10 0 1103.5896 Q5SSJ5 Q5SSJ5 161 170 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.044781 74.173 By MS/MS By MS/MS 4 1.1 2 2 1 2 3 90249000 0 17754000 72495000 9477 1445 9865 40189;40190;40191;40192;40193 33477;33478;33479;33480 33477 4 0 7320900 13580000 MDATANDVPSDR LAKKYKGQKGLVIAKMDATANDVPSDRYKV IAKMDATANDVPSDRYKVEGFPTIYFAPSG K M D D R Y 2 1 1 3 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 1 0 0 12 0 1290.551 P13667 P13667 583 594 PDIA4 Protein disulfide-isomerase A4 yes yes 2 0.0045372 104.22 By MS/MS By MS/MS 3 0 2 1 1 5115500 0 1051300 4064200 9478 549 9866 40194;40195 33481;33482 33482 2 0 448170 788260 MDATANDVPSPYEVR LGEKLSKDPNIVIAKMDATANDVPSPYEVR MDATANDVPSPYEVRGFPTIYFSPANKKLN K M D V R G 2 1 1 2 0 0 1 0 0 0 0 0 1 0 2 1 1 0 1 2 0 0 15 0 1663.7512 P30101 P30101 434 448 PDIA3 Protein disulfide-isomerase A3 yes yes 2 5.2202E-08 173.04 By MS/MS 3.5 0.5 1 1 2 17433000 0 0 17433000 9479 711 9867 40196;40197 33483 33483 1 0 0 2966900 MDAVNAFNQELFSLMDMKPPISR ______________________________ QELFSLMDMKPPISRAKMILITKAAIKAIK - M D S R A 2 1 2 2 0 1 1 0 0 1 2 1 3 2 2 2 0 0 0 1 0 0 23 1 2653.2702 O95104 O95104 1 23 SCAF4 Splicing factor, arginine/serine-rich 15 yes yes 3 0.00023067 65.901 By MS/MS 1.5 0.5 1 1 2 2865700 0 0 2865700 9480 309 9868 40198;40199 33484 33484 1 0 0 633010 MDDEKVAEAALQIFK FHSAETFESLLACLKMDDEKVAEAALQIFK MDDEKVAEAALQIFKNTGSKIEEDFPHIRS K M D F K N 3 0 0 2 0 1 2 0 0 1 1 2 1 1 0 0 0 0 0 1 0 0 15 1 1706.8549 Q9NTI5 Q9NTI5 679 693 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.067994 37.864 By MS/MS 1.5 0.5 1 1 2 3310700 0 0 3310700 9481 2053 9869 40200;40201 33485 33485 1 0 0 724560 MDDREDLVYQAK ______________________________ ______________________________ - M D A K L 1 1 0 3 0 1 1 0 0 0 1 1 1 0 0 0 0 0 1 1 0 0 12 1 1481.682 P62258 P62258 1 12 YWHAE 14-3-3 protein epsilon yes yes 2 0.0029248 98.257 By MS/MS By MS/MS 6.33 0.471 4 2 2 4 136350000 0 26984000 109370000 9482 1011 9870;9871 40202;40203;40204;40205;40206;40207 33486;33487;33488;33489 33489 482 4 0 9341100 16736000 MDDTLFQLK ______________________________ ______________________________ - M D L K F 0 0 0 2 0 1 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 9 0 1109.5427 Q9HD42 Q9HD42 1 9 CHMP1A Charged multivesicular body protein 1a yes yes 2 0.0027739 95.741 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 26086000 0 5624900 20461000 9483 2016 9872 40208;40209;40210;40211 33490;33491 33490 2 0 3180800 3541400 MDETDASSAVK NLVYVVNYPKDNKRKMDETDASSAVKVKRA NKRKMDETDASSAVKVKRAVQKTSDLIVLG K M D V K V 2 0 0 2 0 0 1 0 0 0 0 1 1 0 0 2 1 0 0 1 0 0 11 0 1152.4969 Q13148 Q13148 85 95 TARDBP TAR DNA-binding protein 43 yes yes 2 0.029937 78.655 By MS/MS 5.5 0.5 1 1 2 11015000 0 0 11015000 9484 1224 9873 40212;40213 33492;33493 33492 2 0 0 1536500 MDFLLGNPFSSPVGQR ______________________________ DFLLGNPFSSPVGQRIEKATDGSLQSEDWA - M D Q R I 0 1 1 1 0 1 0 2 0 0 2 0 1 2 2 2 0 0 0 1 0 0 16 0 1763.8665 O60784 O60784 1 16 TOM1 Target of Myb protein 1 yes yes 2 6.951E-06 129.84 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 9539700 0 5928200 3611500 9485 233 9874;9875 40214;40215;40216;40217;40218 33494;33495;33496;33497 33494 95 4 0 1991100 641450 MDGIVPDIAVGTK ______________________________ ______________________________ - M D T K R 1 0 0 2 0 0 0 2 0 2 0 1 1 0 1 0 1 0 0 2 0 0 13 0 1314.6853 P26599 P26599 1 13 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2 0.00063829 110.74 By MS/MS By MS/MS By MS/MS 3.77 1.58 1 2 2 5 1 1 1 1 6 6 251520000 6973000 135460000 109080000 9486 671 9876;9877 40219;40220;40221;40222;40223;40224;40225;40226;40227;40228;40229;40230;40231 33498;33499;33500;33501;33502;33503;33504;33505;33506;33507;33508;33509;33510 33507 304 12 5440200 45496000 19109000 MDGIVPDIAVGTKR ______________________________ ______________________________ - M D K R G 1 1 0 2 0 0 0 2 0 2 0 1 1 0 1 0 1 0 0 2 0 0 14 1 1470.7864 P26599 P26599 1 14 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2 2.0897E-07 164.04 By MS/MS By matching 3.57 1.5 1 1 4 1 6 1 123520000 0 121130000 2394000 9487 671 9878;9879 40232;40233;40234;40235;40236;40237;40238 33511;33512;33513;33514;33515;33516 33514 304 6 0 41029000 391020 MDIEQSLYK ERLQKMGESSLRNFRMDIEQSLYKFEGEDY SLRNFRMDIEQSLYKFEGEDYREKQKLGMV R M D Y K F 0 0 0 1 0 1 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 9 0 1125.5376 P28370 P28370 720 728 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.025722 78.516 By MS/MS 2 0 1 1 4886500 0 4886500 0 9488 693 9880 40239 33517 33517 1 0 2200400 0 MDIFLLPVANPDGYVYTQTQNR SDYQRDPAITSILEKMDIFLLPVANPDGYV VANPDGYVYTQTQNRLWRKTRSRNPGSSCI K M D N R L 1 1 2 2 0 2 0 1 0 1 2 0 1 1 2 0 2 0 2 2 0 0 22 0 2554.2526 Q9UI42 Q9UI42 215 236 CPA4 Carboxypeptidase A4 yes yes 3 0.0021356 53.779 By MS/MS 8.5 0.5 1 1 2 2153000 2153000 0 0 9489 2162 9881 40240;40241 33518 33518 1 1529700 0 0 MDIRPNHTIYINNMNDK ______________________________ IRPNHTIYINNMNDKIKKEELKRSLYALFS - M D D K I 0 1 4 2 0 0 0 0 1 3 0 1 2 0 1 0 1 0 1 0 0 0 17 1 2087.9881 P08579 P08579 1 17 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 3 9.0859E-07 150.59 By MS/MS By MS/MS 6.75 0.433 2 6 4 4 89778000 0 35316000 54462000 9490 473 9882;9883 40242;40243;40244;40245;40246;40247;40248;40249 33519;33520;33521;33522;33523 33521 182 5 0 19270000 9329300 MDIRPNHTIYINNMNDKIK ______________________________ PNHTIYINNMNDKIKKEELKRSLYALFSQF - M D I K K 0 1 4 2 0 0 0 0 1 4 0 2 2 0 1 0 1 0 1 0 0 0 19 2 2329.1671 P08579 P08579 1 19 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 4 0.00047487 70.114 By MS/MS 7 0 1 1 6164900 0 6164900 0 9491 473 9884 40250 33524 33524 1 0 3539900 0 MDKNELVQK ______________________________ ______________________________ - M D Q K A 0 0 1 1 0 1 1 0 0 0 1 2 1 0 0 0 0 0 0 1 0 0 9 1 1103.5645 P63104 P63104 1 9 YWHAZ 14-3-3 protein zeta/delta yes yes 2 3.1321E-17 181.55 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 116760000 0 45060000 71700000 9492 1059 9885 40251;40252;40253;40254 33525;33526;33527;33528 33526 4 0 22882000 11924000 MDLNSASTVVLQVLTQATSQDTAVLKPAEEQLK ______________________________ SQDTAVLKPAEEQLKQWETQPGFYSVLLNI - M D L K Q 4 0 1 2 0 4 2 0 0 0 5 2 1 0 1 3 4 0 0 4 0 0 33 1 3527.8393 Q9UI26 Q9UI26 1 33 IPO11 Importin-11 yes yes 3 5.2934E-11 66.201 By MS/MS 2 0 1 1 939720 0 0 939720 9493 2161 9886 40255 33529 33529 1 0 0 212360 MDLNSEQAEQLER LSKVQKNHVGKPLLKMDLNSEQAEQLERIN LKMDLNSEQAEQLERINDALSCEYECRRRM K M D E R I 1 1 1 1 0 2 3 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 13 0 1561.7042 Q52LJ0 Q52LJ0 197 209 FAM98B Protein FAM98B yes yes 2 4.8164E-72 240.08 By matching By MS/MS 4.33 0.471 2 1 1 2 29781000 9047300 0 20733000 9494 1421 9887 40256;40257;40258 33530 33530 1 7058500 0 3035600 MDLQIGTEK MDEKEEKEFNTKETRMDLQIGTEKAEKNEG NTKETRMDLQIGTEKAEKNEGRMDAEKVEK R M D E K A 0 0 0 1 0 1 1 1 0 1 1 1 1 0 0 0 1 0 0 0 0 0 9 0 1033.5114 Q14966 Q14966 1322 1330 ZNF638 Zinc finger protein 638 yes yes 2 0.034483 74.2 By MS/MS 1 0 1 1 0 0 0 0 9495 1324 9888 40259 33531 33531 1 0 0 0 MDLVTYFGK KELRQFVPGDEPREKMDLVTYFGKRPPGVL DEPREKMDLVTYFGKRPPGVLHCTTKFCDY K M D G K R 0 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 1 0 1 1 0 0 9 0 1072.5263 P09543 P09543 236 244 CNP 2,3-cyclic-nucleotide 3-phosphodiesterase yes yes 2 0.023519 79.906 By MS/MS By MS/MS 5 0 2 1 1 14482000 0 5516300 8966100 9496 488 9889 40260;40261 33532;33533 33533 2 0 1421900 1250600 MDLYSTPAAALDR ______________________________ ______________________________ - M D D R F 3 1 0 2 0 0 0 0 0 0 2 0 1 0 1 1 1 0 1 0 0 0 13 0 1422.6813 Q9Y6K5 Q9Y6K5 1 13 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 0.057198 57.019 By MS/MS 2 0 1 1 2971000 0 0 2971000 9497 2314 9890 40262 33534 33534 1 0 0 671400 MDMSLDDIIK ______________________________ ______________________________ K M D I K L 0 0 0 3 0 0 0 0 0 2 1 1 2 0 0 1 0 0 0 0 0 0 10 0 1179.5515 Q86V81 Q86V81 5 14 ALYREF THO complex subunit 4 yes yes 2 0.061479 71.451 By MS/MS 6 0 1 1 5785000 0 0 5785000 9498 1551 9891 40263 33535 33535 647;648 1 0 0 865500 MDNPDTFYSLK SGNQFVLYRITEVARMDNPDTFYSLKYQIK EVARMDNPDTFYSLKYQIKEGDCPFQSNKT R M D L K Y 0 0 1 2 0 0 0 0 0 0 1 1 1 1 1 1 1 0 1 0 0 0 11 0 1329.5911 CON__P01045-1;CON__Q2KJ62;CON__P01044-1 CON__P01045-1 64 74 yes no 2 0.06219 64.297 By MS/MS 10 0 1 1 1268000 0 1268000 0 + 9499 33 9892 40264 33536 33536 0 0 6415300 0 MDNYADLSDTELTTLLR ______________________________ NYADLSDTELTTLLRRYNIPHGPVVGSTRR - M D L R R 1 1 1 3 0 0 1 0 0 0 4 0 1 0 0 1 3 0 1 0 0 0 17 0 1969.9303 P50402 P50402 1 17 EMD Emerin yes yes 2 1.5663E-05 106.32 By MS/MS 6 0 2 2 1246900 0 1246900 0 9500 878 9893;9894 40265;40266 33537;33538 33538 419 2 0 431630 0 MDNYADLSDTELTTLLRR ______________________________ YADLSDTELTTLLRRYNIPHGPVVGSTRRL - M D R R Y 1 2 1 3 0 0 1 0 0 0 4 0 1 0 0 1 3 0 1 0 0 0 18 1 2126.0314 P50402 P50402 1 18 EMD Emerin yes yes 2 0.00060792 82.362 By MS/MS 6 0 1 1 3253800 0 3253800 0 9501 878 9895 40267 33539 33539 1 0 1126400 0 MDPMNIWDDIITNR KRLLNTWTNRYPDAKMDPMNIWDDIITNRC KMDPMNIWDDIITNRCFFLSKIEEKLTPLP K M D N R C 0 1 2 3 0 0 0 0 0 3 0 0 2 0 1 0 1 1 0 0 0 0 14 0 1732.7913 P78527 P78527 3173 3186 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0005915 117.86 By MS/MS 1.5 0.5 1 1 2 12270000 0 0 12270000 9502 1089 9896 40268;40269 33540;33541 33540 2 0 0 2698700 MDPNTIIEALR ______________________________ ______________________________ - M D L R G 1 1 1 1 0 0 1 0 0 2 1 0 1 0 1 0 1 0 0 0 0 0 11 0 1271.6544 O95373 O95373 1 11 IPO7 Importin-7 yes yes 2 0.02657 72.643 By MS/MS 2 0 1 1 947460 0 947460 0 9503 322 9897 40270 33542 33542 1 0 426650 0 MDQVMQFVEPSR ______________________________ ______________________________ - M D S R Q 0 1 0 1 0 2 1 0 0 0 0 0 2 1 1 1 0 0 0 2 0 0 12 0 1465.6694 P60059 P60059 1 12 SEC61G Protein transport protein Sec61 subunit gamma yes yes 2 0.00044511 108.7 By MS/MS By MS/MS 10 0 4 1 3 4768800 0 584580 4184300 9504 961 9898;9899 40271;40272;40273;40274 33543;33544;33545;33546;33547;33548 33547 460;461 6 0 2957500 9151400 MDSFDEDLAR KSSFSITREAQVNVRMDSFDEDLARPSGLL QVNVRMDSFDEDLARPSGLLAQERKLCRDL R M D A R P 1 1 0 3 0 0 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 10 0 1197.4972 Q9Y2W1 Q9Y2W1 573 582 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.014969 85.862 By matching By MS/MS 1.5 0.5 1 1 1 1 20193000 0 1458800 18734000 9505 2252 9900 40275;40276 33549 33549 1 0 713050 4233600 MDSFDEDLARPSGLLAQER KSSFSITREAQVNVRMDSFDEDLARPSGLL DEDLARPSGLLAQERKLCRDLVHSNKKEQE R M D E R K 2 2 0 3 0 1 2 1 0 0 3 0 1 1 1 2 0 0 0 0 0 0 19 1 2149.011 Q9Y2W1 Q9Y2W1 573 591 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 7.7375E-51 218.21 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 47283000 0 3534900 43748000 9506 2252 9901 40277;40278;40279;40280;40281 33550;33551;33552;33553 33553 4 0 1591800 9733400 MDSLVTANTK ______________________________ ______________________________ - M D T K F 1 0 1 1 0 0 0 0 0 0 1 1 1 0 0 1 2 0 0 1 0 0 10 0 1078.5329 Q96P63 Q96P63 1 10 SERPINB12 Serpin B12 yes yes 2 1.1532E-11 172.23 By MS/MS By matching 6.67 3.06 1 1 1 2 1 1 2 8 1 92876000 90615000 0 2260700 9507 1816 9902;9903 40282;40283;40284;40285;40286;40287;40288;40289;40290 33554;33555;33556;33557;33558;33559;33560;33561 33556 671 8 102700000 0 401150 MDTDLETMDLDQGGEALAPR IREERSRRERVRQSRMDTDLETMDLDQGGE ETMDLDQGGEALAPRQVLDLEDLVFTQGSH R M D P R Q 2 1 0 4 0 1 2 2 0 0 3 0 2 0 1 0 2 0 0 0 0 0 20 0 2176.9616 O75643 O75643 387 406 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.5887E-186 297.5 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 43176000 0 7354500 35821000 9508 277 9904 40291;40292;40293;40294;40295 33562;33563;33564;33565 33564 4 0 3594800 7753900 MDTEEARPAK AEQLSAAGEGGDAGRMDTEEARPAKRPVFP GDAGRMDTEEARPAKRPVFPPLCGDGLLSG R M D A K R 2 1 0 1 0 0 2 0 0 0 0 1 1 0 1 0 1 0 0 0 0 0 10 1 1146.5339 Q9NRX1 Q9NRX1 47 56 PNO1 RNA-binding protein PNO1 yes yes 2 0.022067 104.2 By MS/MS 6 0 1 1 2331300 0 2331300 0 9509 2047 9905 40296 33566 33566 1 0 807020 0 MDTLAHVLYYPQKPLVTTR GKQAMGVYITNFHVRMDTLAHVLYYPQKPL AHVLYYPQKPLVTTRSMEYLRFRELPAGIN R M D T R S 1 1 0 1 0 1 0 0 1 0 3 1 1 0 2 0 3 0 2 2 0 0 19 1 2245.1929 P30876 P30876 744 762 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 4 0.0065227 51.566 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 18577000 0 3204600 15372000 9510 715 9906 40297;40298;40299 33567;33568 33568 2 0 1443100 3442100 MDTMMLNVR ______________________________ ______________________________ - M D V R N 0 1 1 1 0 0 0 0 0 0 1 0 3 0 0 0 1 0 0 1 0 0 9 0 1109.5032 Q9H0H5 Q9H0H5 1 9 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 9.303E-06 151.27 By matching By MS/MS 6.25 3.27 2 1 1 1 3 5933300 626450 5306800 0 9511 1963 9907 40300;40301;40302;40303 33569;33570;33571 33569 3 722780 3926900 0 MDTPLRR ______________________________ ______________________________ - M D R R S 0 2 0 1 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 7 1 887.46472 Q9H6F5 Q9H6F5 1 7 CCDC86 Coiled-coil domain-containing protein 86 yes yes 2 0.023218 52.683 By MS/MS 4 0 1 1 0 0 0 0 9512 1986 9908 40304 33572 33572 1 0 0 0 MDVFLMIR ______________________________ ______________________________ - M D I R R 0 1 0 1 0 0 0 0 0 1 1 0 2 1 0 0 0 0 0 1 0 0 8 0 1023.5245 Q15370 Q15370 1 8 TCEB2 Transcription elongation factor B polypeptide 2 yes yes 2 0.0054569 81.297 By MS/MS By MS/MS 8 0 3 2 1 1955100 0 1200800 754280 9513 1359 9909;9910 40305;40306;40307 33573;33574;33575 33573 624 3 0 546320 115640 MDVFMKGLSK ______________________________ ______________________________ - M D S K A 0 0 0 1 0 0 0 1 0 0 1 2 2 1 0 1 0 0 0 1 0 0 10 1 1154.5828 P37840 P37840 1 10 SNCA Alpha-synuclein yes yes 2 0.023595 70.056 By MS/MS 6 1 1 1 2 10594000 0 10594000 0 9514 769 9911 40308;40309 33576;33577 33577 2 0 3583600 0 MDVHDLFR ______________________________ ______________________________ - M D F R R 0 1 0 2 0 0 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 8 0 1031.4859 Q9Y2R4 Q9Y2R4 1 8 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 2 0.00098158 109.86 By matching By MS/MS By MS/MS 3 0 3 1 1 1 16001000 1126700 1576000 13299000 9515 2246 9912 40310;40311;40312 33578;33579 33579 2 1300000 671840 2579300 MDYEDDRLR YDHGSRSQESGYYDRMDYEDDRLRDGERCR SGYYDRMDYEDDRLRDGERCRDDSFFGETS R M D L R D 0 2 0 3 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 9 1 1211.5241 P43243 P43243 217 225 MATR3 Matrin-3 yes yes 2;3 0.002912 129.72 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 29327000 0 8521600 20806000 9516 812 9913;9914 40313;40314;40315;40316;40317 33580;33581;33582 33581 399 3 0 3837400 4533900 MEAAAEPGNLAGVR ______________________________ ______________________________ - M E V R H 4 1 1 0 0 0 2 2 0 0 1 0 1 0 1 0 0 0 0 1 0 0 14 0 1384.6769 Q9Y5Y2 Q9Y5Y2 1 14 NUBP2 Cytosolic Fe-S cluster assembly factor NUBP2 yes yes 2 0.0021321 89.548 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 18652000 0 7247800 11404000 9517 2304 9915 40318;40319;40320;40321 33583;33584 33583 2 0 3913600 1885300 MEADPELSK ASAQSEAEKERIMGKMEADPELSKFLYQLH ERIMGKMEADPELSKFLYQLHETEKEDLIR K M E S K F 1 0 0 1 0 0 2 0 0 0 1 1 1 0 1 1 0 0 0 0 0 0 9 0 1018.4641 O75643 O75643 350 358 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.014483 85.862 By MS/MS 1.5 0.5 1 1 2 11546000 0 11546000 0 9518 277 9916 40322;40323 33585 33585 1 0 5594000 0 MEAFQELR ______________________________ ______________________________ - M E L R K 1 1 0 0 0 1 2 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 1022.4855 Q96JM3 Q96JM3 1 8 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 yes yes 2 0.010335 83.265 By MS/MS By matching 2.5 0.5 1 1 1 1 2698500 0 1051800 1646700 9519 1801 9917 40324;40325 33586 33586 1 0 473650 319380 MEAGPSGAAAGAYLPPLQQVFQAPR ______________________________ GAYLPPLQQVFQAPRRPGIGTVGKPIKLLA - M E P R R 6 1 0 0 0 3 1 3 0 0 2 0 1 1 4 1 0 0 1 1 0 0 25 0 2526.2689 Q9UL18 Q9UL18 1 25 AGO1 Protein argonaute-1 yes yes 3 1.6991E-06 77.287 By MS/MS 2 0 1 1 2098100 0 2098100 0 9520 2186 9918 40326 33587 33587 1 0 944790 0 MEALLEGIQNR ______________________________ ______________________________ - M E N R G 1 1 1 0 0 1 2 1 0 1 2 0 1 0 0 0 0 0 0 0 0 0 11 0 1272.6496 Q96MT8 Q96MT8 1 11 CEP63 Centrosomal protein of 63 kDa yes yes 2 0.00015865 125.82 By MS/MS By MS/MS 4 0 2 1 1 2215100 0 473080 1742000 9521 1812 9919 40327;40328 33588;33589 33589 2 0 157000 284530 MEATGVLPFVR ______________________________ ______________________________ - M E V R G 1 1 0 0 0 0 1 1 0 0 1 0 1 1 1 0 1 0 0 2 0 0 11 0 1218.6431 Q13045 Q13045 1 11 FLII Protein flightless-1 homolog yes yes 2 3.6786E-10 164.57 By MS/MS 1.67 0.471 1 2 3 7320600 0 7320600 0 9522 1216 9920;9921 40329;40330;40331 33590;33591;33592 33592 575 3 0 3326600 0 MEDQFAALHENPDIIIATPGR KFTGLKTALILGGDRMEDQFAALHENPDII ALHENPDIIIATPGRLVHVAVEMSLKLQSV R M E G R L 3 1 1 2 0 1 2 1 1 3 1 0 1 1 2 0 1 0 0 0 0 0 21 0 2337.1423 Q8TDD1 Q8TDD1 206 226 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 2.2775E-14 125.73 By MS/MS By MS/MS 2 0 2 1 1 15894000 0 4671300 11223000 9523 1661 9922 40332;40333 33593;33594 33594 2 0 2103500 2536100 MEDSASASLSSAAATGTSTSTPAAPTAR ______________________________ ATGTSTSTPAAPTARKQLDKEQVRKAVDAL - M E A R K 8 1 0 1 0 0 1 1 0 0 1 0 1 0 2 7 5 0 0 0 0 0 28 0 2596.1923 O76021 O76021 1 28 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 3 3.768E-48 178.69 By MS/MS By MS/MS 3.38 0.857 1 4 2 1 6 2 105770000 0 79112000 26655000 9524 295 9923;9924 40334;40335;40336;40337;40338;40339;40340;40341 33595;33596;33597;33598;33599;33600;33601 33599 114 7 0 28192000 5169700 MEDSEALGFEHMGLDPR ______________________________ DSEALGFEHMGLDPRLLQAVTDLGWSRPTL - M E P R L 1 1 0 2 0 0 3 2 1 0 2 0 2 1 1 1 0 0 0 0 0 0 17 0 1932.8346 Q9NY93 Q9NY93 1 17 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2 4.0166E-06 123.95 By MS/MS 4 0 1 1 6940300 0 0 6940300 9525 2095 9925 40342 33602 33602 1 0 0 1133600 MEDSMDMDMSPLRPQNYLFGCELK ______________________________ SPLRPQNYLFGCELKADKDYHFKVDNDENE - M E L K A 0 1 1 3 1 1 2 1 0 0 3 1 4 1 2 2 0 0 1 0 0 0 24 1 2906.2417 P06748 P06748 1 24 NPM1 Nucleophosmin yes yes 3 0.0050051 48.182 By MS/MS 6 0 1 1 6054500 0 0 6054500 9526 449 9926 40343 33603 33603 165;166;167 1 0 0 905810 MEEEILLLEDQNSK KLQLEKVTAEAKIKKMEEEILLLEDQNSKF KMEEEILLLEDQNSKFIKEKKLMEDRIAEC K M E S K F 0 0 1 1 0 1 4 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 14 0 1689.8131 P35580 P35580 983 996 MYH10 Myosin-10 yes yes 2 5.1169E-05 159.94 By MS/MS 1 0 1 1 9827600 0 0 9827600 9527 753 9927 40344 33604 33604 1 0 0 2117500 MEEESGAPGVPSGNGAPGPK AGVEAAAEVAATEIKMEEESGAPGVPSGNG GAPGVPSGNGAPGPKGEGERPAQNEKRKEK K M E P K G 2 0 1 0 0 0 3 5 0 0 0 1 1 0 4 2 0 0 0 1 0 0 20 0 1866.8418 P52272 P52272 18 37 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 3.6366E-13 141.54 By MS/MS By MS/MS By MS/MS 3 0.632 1 3 1 1 1 3 84942000 3368500 9349700 72224000 9528 902 9928 40345;40346;40347;40348;40349 33605;33606;33607;33608 33607 4 3886500 3985800 13816000 MEEETEVRESEK KEQEEEEQKQEMEVKMEEETEVRESEKQQD EVKMEEETEVRESEKQQDSQPEEVMDVLEM K M E E K Q 0 1 0 0 0 0 6 0 0 0 0 1 1 0 0 1 1 0 0 1 0 0 12 1 1494.6508 Q9H307 Q9H307 366 377 PNN Pinin yes yes 3 0.013193 71.153 By MS/MS 2 0 1 1 2004300 0 0 2004300 9529 1978 9929 40350 33609 33609 1 0 0 452920 MEEETHTDAK ______________________________ ______________________________ - M E A K I 1 0 0 1 0 0 3 0 1 0 0 1 1 0 0 0 2 0 0 0 0 0 10 0 1189.4921 Q9NQT4 Q9NQT4 1 10 EXOSC5 Exosome complex component RRP46 yes yes 2 0.00019683 126.07 By MS/MS 7 0 1 1 6827400 0 0 6827400 9530 2035 9930 40351 33610 33610 1 0 0 1211500 MEELHNQEMQK LLRQDLMRRQEELRRMEELHNQEMQKRKEM ELRRMEELHNQEMQKRKEMQLRQEEERRRR R M E Q K R 0 0 1 0 0 2 3 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 11 0 1415.6173 P23246 P23246 549 559 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 5.4282E-90 256.38 By MS/MS By MS/MS 2.61 1.3 3 7 5 1 1 1 8 10 185060000 0 55469000 129590000 9531 638 9931;9932 40352;40353;40354;40355;40356;40357;40358;40359;40360;40361;40362;40363;40364;40365;40366;40367;40368;40369 33611;33612;33613;33614;33615;33616;33617;33618;33619;33620;33621;33622 33616 285;286 12 0 25052000 25866000 MEELHNQEVQK LMRQDLMRRQEELRRMEELHNQEVQKRKQL ELRRMEELHNQEVQKRKQLELRQEEERRRR R M E Q K R 0 0 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 11 0 1383.6453 Q15233 Q15233 326 336 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 1.5635E-09 167.09 By MS/MS By MS/MS By MS/MS 3.53 1.09 1 1 5 5 3 1 8 6 220370000 3093800 27255000 190030000 9532 1351 9933;9934 40370;40371;40372;40373;40374;40375;40376;40377;40378;40379;40380;40381;40382;40383;40384 33623;33624;33625;33626;33627;33628;33629;33630;33631;33632;33633;33634 33633 12 2413700 9423700 34087000 MEEPQSDPSVEPPLSQETFSDLWK ______________________________ VEPPLSQETFSDLWKLLPENNVLSPLPSQA - M E W K L 0 0 0 2 0 2 4 0 0 0 2 1 1 1 4 4 1 1 0 1 0 0 24 0 2775.2585 P04637 P04637 1 24 TP53 Cellular tumor antigen p53 yes yes 3 0.00030213 57.147 By MS/MS 4 0 1 1 10593000 0 0 10593000 9533 416 9935 40385 33635 33635 1 0 0 1730100 MEETPTEYLQR LKIGFFNQQYAEQLRMEETPTEYLQRGFNL EQLRMEETPTEYLQRGFNLPYQDARKCLGR R M E Q R G 0 1 0 0 0 1 3 0 0 0 1 0 1 0 1 0 2 0 1 0 0 0 11 0 1395.634 Q8NE71 Q8NE71 703 713 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 3.3626E-54 177.36 By MS/MS By MS/MS 2 0 2 1 1 0 0 0 0 9534 1638 9936 40386;40387 33636;33637 33636 2 0 0 0 MEEVVIAGMSGK ______________________________ ______________________________ - M E G K L 1 0 0 0 0 0 2 2 0 1 0 1 2 0 0 1 0 0 0 2 0 0 12 0 1249.6046 P49327 P49327 1 12 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.044889 64.439 By MS/MS 1 0 1 1 1287800 0 1287800 0 9535 853 9937 40388 33638 33638 1 0 629450 0 MEFVSEVQR MERYQHYRQTVRALRMEFVSEVQRKVHEAR TVRALRMEFVSEVQRKVHEARAGVLAERKA R M E Q R K 0 1 0 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 9 0 1123.5332 Q9BYN8 Q9BYN8 72 80 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 1.7219E-07 160.54 By MS/MS 7 0 1 1 32970000 0 0 32970000 9536 1938 9938 40389 33639 33639 1 0 0 5850300 MEGDAVEAIVEESETFIK ______________________________ DAVEAIVEESETFIKGKERKTYQRRREGGQ - M E I K G 2 0 0 1 0 0 5 1 0 2 0 1 1 1 0 1 1 0 0 2 0 0 18 0 1995.9347 P49711 P49711 1 18 CTCF Transcriptional repressor CTCF yes yes 2 4.3596E-13 173.19 By MS/MS 2 0 1 1 11905000 0 0 11905000 9537 861 9939 40390 33640 33640 1 0 0 2690400 MEGGTENDLR KADAIVKMLDAAVIKMEGGTENDLRILEQE AAVIKMEGGTENDLRILEQEEEEEQAGKPG K M E L R I 0 1 1 1 0 0 2 2 0 0 1 0 1 0 0 0 1 0 0 0 0 0 10 0 1120.4819 Q9BXP5 Q9BXP5 257 266 SRRT Serrate RNA effector molecule homolog yes yes 2 2.8735E-16 176.79 By MS/MS 2 0 2 2 6674600 0 6674600 0 9538 1929 9940;9941 40391;40392 33641;33642 33641 680 1 0 3005700 0 MEGPLSVFGDR ______________________________ ______________________________ - M E D R S 0 1 0 1 0 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 11 0 1206.5703 P17987 P17987 1 11 TCP1 T-complex protein 1 subunit alpha yes yes 2 0.0034312 96.89 By matching By MS/MS 4 0 2 1 1 1408500 473830 0 934670 9539 591 9942 40393;40394 33643 33643 1 369670 0 152660 MEGQSVEELLAK ______________________________ ______________________________ - M E A K A 1 0 0 0 0 1 3 1 0 0 2 1 1 0 0 1 0 0 0 1 0 0 12 0 1332.6595 Q15050 Q15050 1 12 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.00034652 121.41 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 14560000 2342800 0 12217000 9540 1337 9943 40395;40396;40397 33644;33645;33646 33646 3 1876900 0 1767300 MEGVSALLAR ______________________________ ______________________________ - M E A R C 2 1 0 0 0 0 1 1 0 0 2 0 1 0 0 1 0 0 0 1 0 0 10 0 1045.559 Q5SNT2 Q5SNT2 1 10 TMEM201 Transmembrane protein 201 yes yes 2 3.5753E-11 167.23 By MS/MS By MS/MS 7.38 1.93 2 1 2 1 2 3 5 12165000 0 4392600 7772100 9541 1444 9944;9945 40398;40399;40400;40401;40402;40403;40404;40405 33647;33648;33649;33650;33651 33648 632 5 0 1307800 6266000 MEIAELNR QITAGRHGDDLKNSKMEIAELNRTVQRLQA DDLKNSKMEIAELNRTVQRLQAEISNVKKQ K M E N R T 1 1 1 0 0 0 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 8 0 974.48552 CON__Q7Z794;Q7Z794 CON__Q7Z794 380 387 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.0048053 100.39 By MS/MS By matching 1 0 2 1 1 7102200 6115900 986260 0 + 9542 95 9946 40406;40407 33652 33652 1 6115900 482070 0 MEKPPAPPSLPAGPPGVK WNRETKQFFLQFHFKMEKPPAPPSLPAGPP PPAPPSLPAGPPGVKRPPPPLMNGLPPRPP K M E V K R 2 0 0 0 0 0 1 2 0 0 1 2 1 0 7 1 0 0 0 1 0 0 18 1 1768.9546 Q15428 Q15428 214 231 SF3A2 Splicing factor 3A subunit 2 yes yes 3 0.040854 37.292 By MS/MS 4 0 1 1 7118700 0 7118700 0 9543 1366 9947 40408 33653 33653 1 0 2362400 0 MELAGSNTTASSPAR VAAHASLNPALFSMKMELAGSNTTASSPAR MELAGSNTTASSPARARGRPRKTKPGSMQP K M E A R A 3 1 1 0 0 0 1 1 0 0 1 0 1 0 1 3 2 0 0 0 0 0 15 0 1491.6988 Q9UIF9 Q9UIF9 1173 1187 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes yes 2 8.3341E-46 224.42 By MS/MS By MS/MS 1 0 2 1 1 8719200 0 3311100 5408100 9544 2163 9948 40409;40410 33654;33655 33655 2 0 1618400 1165300 MELEAMSR ______________________________ ______________________________ - M E S R Y 1 1 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 8 0 965.43104 P61165 P61165 1 8 TMEM258 Transmembrane protein 258 yes yes 2 0.010264 83.313 By MS/MS By MS/MS 10 0 4 2 2 11204000 0 2585700 8618600 9545 983 9949;9950 40411;40412;40413;40414 33656;33657;33658 33658 470 3 0 13081000 18850000 MELENIVANTVLLK ______________________________ ______________________________ - M E L K A 1 0 2 0 0 0 2 0 0 1 3 1 1 0 0 0 1 0 0 2 0 0 14 0 1585.8749 P43250;P34947 P43250 1 14 GRK6;GRK5 G protein-coupled receptor kinase 6;G protein-coupled receptor kinase 5 yes no 2 0.0012196 99.215 By MS/MS 3.5 0.5 1 1 2 1304000 0 0 1304000 9546 736 9951 40415;40416 33659 33659 1 0 0 248460 MELITILEK ______________________________ ______________________________ - M E E K T 0 0 0 0 0 0 2 0 0 2 2 1 1 0 0 0 1 0 0 0 0 0 9 0 1088.6151 Q14974 Q14974 1 9 KPNB1 Importin subunit beta-1 yes yes 2 0.0059501 87.308 By matching By MS/MS By MS/MS 2.29 0.881 1 4 1 1 1 2 4 44694000 164590 4630600 39899000 9547 1325 9952;9953 40417;40418;40419;40420;40421;40422;40423 33660;33661;33662;33663;33664;33665 33663 599 6 198310 2085200 8399900 MELQEIQLK GMKVIENRALKDEEKMELQEIQLKEAKHIA LKDEEKMELQEIQLKEAKHIAEEADRKYEE K M E L K E 0 0 0 0 0 2 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 9 0 1130.6005 P06753 P06753 142 150 TPM3 Tropomyosin alpha-3 chain yes yes 2 0.00045749 123.72 By MS/MS By MS/MS 6 0 4 2 2 84357000 0 34628000 49729000 9548 450 9954 40424;40425;40426;40427 33666;33667;33668 33667 3 0 11987000 7440000 MELSAEYLR ______________________________ ______________________________ - M E L R E 1 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 1 0 0 0 9 0 1110.5379 Q9H3K6 Q9H3K6 1 9 BOLA2 BolA-like protein 2 yes yes 2 0.0011961 103.83 By MS/MS By matching 10 0 4 2 2 4677600 0 2643300 2034300 9549 1979 9955;9956 40428;40429;40430;40431 33669;33670 33669 687 1 0 13373000 4449100 MENILSGNPLLNLTGPSQPQANFK ARKEQEQKAEEERIRMENILSGNPLLNLTG LLNLTGPSQPQANFKVKRRWDDDVVFKNCA R M E F K V 1 0 4 0 0 2 1 2 0 1 4 1 1 1 3 2 1 0 0 0 0 0 24 0 2582.3163 Q9P013 Q9P013 160 183 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2;3 1.7648E-10 95.122 By MS/MS By MS/MS 6 0 4 2 2 34857000 0 11819000 23038000 9550 2109 9957 40432;40433;40434;40435 33671;33672;33673 33673 3 0 4091200 3446700 MENQVLTPHVYWAQR ______________________________ MENQVLTPHVYWAQRHRELYLRVELSDVQN - M E Q R H 1 1 1 0 0 2 1 0 1 0 1 0 1 0 1 0 1 1 1 2 0 0 15 0 1870.9148 Q9P035 Q9P035 1 15 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 2 4.0165E-12 181.66 By MS/MS By MS/MS 3.5 2.5 1 1 1 1 12168000 0 3581200 8586800 9551 2112 9958 40436;40437 33674;33675 33675 2 0 1239700 1850200 MEPDGTYEPGFVGIR ______________________________ MEPDGTYEPGFVGIRFCQECNNMLYPKEDK - M E I R F 0 1 0 1 0 0 2 3 0 1 0 0 1 1 2 0 1 0 1 1 0 0 15 0 1666.7661 P36954 P36954 1 15 POLR2I DNA-directed RNA polymerase II subunit RPB9 yes yes 2 0.0015784 87.184 By MS/MS 9 0 1 1 4087900 0 0 4087900 9552 764 9959 40438 33676 33676 1 0 0 1305800 MEPLQVVK TIQLTHEQQLILNHKMEPLQVVKIMAFAGT QLILNHKMEPLQVVKIMAFAGTGKTSTLVK K M E V K I 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 8 0 942.52084 Q8NFZ0 Q8NFZ0 453 460 FBXO18 F-box only protein 18 yes yes 1 0.022977 91.626 By MS/MS 3 0 1 1 7012300 0 7012300 0 9553 1645 9960 40439 33677 33677 653 1 0 2989300 0 MEQQEMAQQER LSGEEHEKLQQLLQRMEQQEMAQQERKQQQ LLQRMEQQEMAQQERKQQQELHLALKQERR R M E E R K 1 1 0 0 0 4 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 11 0 1406.5918 Q96EU6 Q96EU6 175 185 RRP36 Ribosomal RNA processing protein 36 homolog yes yes 2 0.00023846 135.55 By MS/MS By matching 6 0 2 1 1 4925800 0 1686700 3239100 9554 1777 9961 40440;40441 33678 33678 1 0 583880 484600 MESDFYLR ______________________________ ______________________________ - M E L R Y 0 1 0 1 0 0 1 0 0 0 1 0 1 1 0 1 0 0 1 0 0 0 8 0 1059.4695 P61326 P61326 1 8 MAGOH Protein mago nashi homolog yes yes 2 0.0029866 98.418 By MS/MS By MS/MS 7.5 0.764 1 1 4 2 4 23326000 0 4654400 18672000 9555 992 9962;9963 40442;40443;40444;40445;40446;40447 33679;33680;33681 33680 475 3 0 2117600 2890700 MESNKDEAER ______________________________ ______________________________ - M E E R C 1 1 1 1 0 0 3 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 10 1 1207.5139 Q9NXW2 Q9NXW2 1 10 DNAJB12 DnaJ homolog subfamily B member 12 yes yes 2 0.069932 54.982 By MS/MS 5 0 1 1 808070 0 0 808070 9556 2091 9964 40448 33682 33682 1 0 0 112710 METILEQQR ______________________________ ______________________________ - M E Q R R 0 1 0 0 0 2 2 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 9 0 1146.5703 Q12874 Q12874 1 9 SF3A3 Splicing factor 3A subunit 3 yes yes 2 2.1159E-17 183.26 By MS/MS By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 27218000 4435500 7520600 15262000 9557 1206 9965 40449;40450;40451;40452 33683;33684;33685;33686 33685 4 3460400 2495800 2708800 METVLGQSMSSLPLSYR CYRKMEEDIYTNLSKMETVLGQSMSSLPLS TVLGQSMSSLPLSYREALERLEQSKALVSN K M E Y R E 0 1 0 0 0 1 1 1 0 0 3 0 2 0 1 4 1 0 1 1 0 0 17 0 1897.9278 Q8WXH0 Q8WXH0 3378 3394 SYNE2 Nesprin-2 yes yes 2 4.458E-05 103.88 By MS/MS 1 0 1 1 1605700 0 1605700 0 9558 1696 9966 40453 33687 33687 1 0 784820 0 MEVKPPPGRPQPDSGR ______________________________ EVKPPPGRPQPDSGRRRRRRGEEGHDPKEP - M E G R R 0 2 0 1 0 1 1 2 0 0 0 1 1 0 5 1 0 0 0 1 0 0 16 2 1746.8835 P51991 P51991 1 16 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 1.2931E-05 107.37 By MS/MS By MS/MS 5.7 2.67 2 2 2 4 6 3 4 3 4 14 16 1279000000 0 530390000 748660000 9559 900 9967;9968 40454;40455;40456;40457;40458;40459;40460;40461;40462;40463;40464;40465;40466;40467;40468;40469;40470;40471;40472;40473;40474;40475;40476;40477;40478;40479;40480;40481;40482;40483 33688;33689;33690;33691;33692;33693;33694;33695;33696;33697;33698;33699;33700;33701;33702;33703;33704;33705;33706;33707;33708;33709;33710;33711;33712;33713;33714;33715;33716;33717;33718;33719;33720;33721;33722;33723 33716 422 36 0 209500000 164730000 MEVLRPQLIR ______________________________ ______________________________ - M E I R I 0 2 0 0 0 1 1 0 0 1 2 0 1 0 1 0 0 0 0 1 0 0 10 1 1253.7278 Q8N9N2 Q8N9N2 1 10 ASCC1 Activating signal cointegrator 1 complex subunit 1 yes yes 2 0.053539 59.153 By MS/MS By matching 5.5 0.5 1 1 1 1 49706000 0 47630000 2076600 9560 1617 9969 40484;40485 33724 33724 1 0 12277000 310680 MEVMNLMEQPIK ______________________________ ______________________________ - M E I K V 0 0 1 0 0 1 2 0 0 1 1 1 3 0 1 0 0 0 0 1 0 0 12 0 1461.703 P14923 P14923 1 12 JUP Junction plakoglobin yes yes 2 0.0013849 107.95 By MS/MS By MS/MS By MS/MS 4.33 2.58 1 1 3 1 1 1 1 2 2 5 22180000 2564800 2501100 17114000 9561 567 9970 40486;40487;40488;40489;40490;40491;40492;40493;40494 33725;33726;33727;33728;33729;33730 33730 4 2793900 1082300 3335600 MEVSPLQPVNENMQVNK ______________________________ VSPLQPVNENMQVNKIKKNEDAKKRLSVER - M E N K I 0 0 3 0 0 2 2 0 0 0 1 1 2 0 2 1 0 0 0 3 0 0 17 0 1955.9445 P11388 P11388 1 17 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.9693E-06 140.14 By MS/MS 1.5 0.5 1 1 2 15392000 0 15392000 0 9562 524 9971 40495;40496 33731;33732 33731 2 0 7220400 0 MEVSVSDK ACSKQTLSSLKLDCKMEVSVSDKLAVVDEW SLKLDCKMEVSVSDKLAVVDEWRKEMGLCW K M E D K L 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 2 0 0 0 2 0 0 8 0 893.41643 Q8NFW8 Q8NFW8 343 350 CMAS N-acylneuraminate cytidylyltransferase yes yes 2 0.048834 73.248 By MS/MS 4.5 0.5 1 1 2 13296000 0 0 13296000 9563 1644 9972 40497;40498 33733 33733 1 0 0 1877400 MEVVEAAAAQLETLK ______________________________ MEVVEAAAAQLETLKFNGTDFGVGEGPAAP - M E L K F 4 0 0 0 0 1 3 0 0 0 2 1 1 0 0 0 1 0 0 2 0 0 15 0 1601.8335 Q96HR8 Q96HR8 1 15 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 yes yes 2 0.0013835 88.021 By MS/MS 2.5 1.12 1 1 1 1 4 6604600 0 0 6604600 9564 1795 9973 40499;40500;40501;40502 33734;33735 33734 1 0 0 1302400 MEYFMVPTQK ______________________________ ______________________________ - M E Q K V 0 0 0 0 0 1 1 0 0 0 0 1 2 1 1 0 1 0 1 1 0 0 10 0 1272.5883 Q01664 Q01664 1 10 TFAP4 Transcription factor AP-4 yes yes 2 0.020285 74.92 By MS/MS 5.5 0.5 1 1 2 1797700 0 1797700 0 9565 1137 9974 40503;40504 33736 33736 1 0 489130 0 MFADYLAHESR DEIKPSSAPELQAVRMFADYLAHESRRDSI QAVRMFADYLAHESRRDSIVAELDREMSRS R M F S R R 2 1 0 1 0 0 1 0 1 0 1 0 1 1 0 1 0 0 1 0 0 0 11 0 1338.6027 O14579 O14579 86 96 COPE Coatomer subunit epsilon yes yes 3 0.0051048 79.82 By MS/MS 6 0 1 1 5584000 0 0 5584000 9566 137 9975 40505 33737 33737 1 0 0 835430 MFASLFPHNPQFIGR ILNNFTTRLGHSIGRMFASLFPHNPQFIGR MFASLFPHNPQFIGRQVATFHNQRDYIFFR R M F G R Q 1 1 1 0 0 1 0 1 1 1 1 0 1 3 2 1 0 0 0 0 0 0 15 0 1760.8821 Q9H9Y2 Q9H9Y2 262 276 RPF1 Ribosome production factor 1 yes yes 3 0.0013406 78.763 By matching By MS/MS By MS/MS 4.5 0.5 2 2 1 1 2 24908000 607160 11529000 12772000 9567 1999 9976 40506;40507;40508;40509 33738;33739 33739 2 473690 2971800 1823900 MFFEDEKPALLSQIDAEFEK TLLGVMYLYVGPSLRMFFEDEKPALLSQID EKPALLSQIDAEFEKMQGQSPPAPTRGISK R M F E K M 2 0 0 2 0 1 4 0 0 1 2 2 1 3 1 1 0 0 0 0 0 0 20 1 2386.1403 Q14008 Q14008 792 811 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 9.4431E-45 210.34 By MS/MS 1.5 0.5 2 2 4 49873000 0 0 49873000 9568 1279 9977 40510;40511;40512;40513 33740;33741;33742;33743 33741 4 0 0 10993000 MFGGPGTASR ______________________________ SSYRRMFGGPGTASRPSSSRSYVTTSTRTY R M F S R P 1 1 0 0 0 0 0 3 0 0 0 0 1 1 1 1 1 0 0 0 0 0 10 0 979.45455 P08670 P08670 14 23 VIM Vimentin yes yes 2 1.772E-07 161.86 By matching By MS/MS By MS/MS 4 0.707 2 4 2 1 3 4 347420000 9317700 54135000 283960000 9569 476 9978;9979 40514;40515;40516;40517;40518;40519;40520;40521 33744;33745;33746;33747;33748;33749;33750;33751;33752 33750 190 9 7269400 17966000 47529000 MFGGPGTASRPSSSR ______________________________ MFGGPGTASRPSSSRSYVTTSTRTYSLGSA R M F S R S 1 2 0 0 0 0 0 3 0 0 0 0 1 1 2 4 1 0 0 0 0 0 15 1 1493.7045 P08670 P08670 14 28 VIM Vimentin yes yes 2;3 8.0553E-05 121.36 By matching By MS/MS By MS/MS 4 1.03 1 4 5 4 1 1 6 8 593180000 315970 469510000 123360000 9570 476 9980;9981 40522;40523;40524;40525;40526;40527;40528;40529;40530;40531;40532;40533;40534;40535;40536 33753;33754;33755;33756;33757;33758;33759;33760;33761;33762;33763;33764 33755 190 12 380700 155680000 17469000 MFGIPVVVAVNAFK EKGFSNLKKQIENARMFGIPVVVAVNAFKT RMFGIPVVVAVNAFKTDTESELDLISRLSR R M F F K T 2 0 1 0 0 0 0 1 0 1 0 1 1 2 1 0 0 0 0 4 0 0 14 0 1490.8319 P11586 P11586 747 760 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.010258 80.688 By MS/MS 2.5 0.5 1 1 2 2440600 0 2440600 0 9571 528 9982 40537;40538 33765 33765 1 0 1087100 0 MFIGGLSWDTSK GSKINASKNQQDDGKMFIGGLSWDTSKKDL DGKMFIGGLSWDTSKKDLTEYLSRFGEVVD K M F S K K 0 0 0 1 0 0 0 2 0 1 1 1 1 1 0 2 1 1 0 0 0 0 12 0 1340.6435 O14979 O14979 150 161 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 3.0259E-05 150.61 By MS/MS By MS/MS By MS/MS 4.44 1.42 1 2 1 2 3 1 5 3 139940000 4255300 51459000 84220000 9572 157 9983 40539;40540;40541;40542;40543;40544;40545;40546;40547 33766;33767;33768;33769;33770;33771;33772 33770 6 5666000 16969000 12383000 MFIGGLSWDTSKK GSKINASKNQQDDGKMFIGGLSWDTSKKDL GKMFIGGLSWDTSKKDLTEYLSRFGEVVDC K M F K K D 0 0 0 1 0 0 0 2 0 1 1 2 1 1 0 2 1 1 0 0 0 0 13 1 1468.7384 O14979 O14979 150 162 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2;3 0.0031924 108.7 By matching By MS/MS By MS/MS 4.33 1.55 1 1 1 2 4 3 1 7 4 307280000 6061600 176220000 124990000 9573 157 9984 40548;40549;40550;40551;40552;40553;40554;40555;40556;40557;40558;40559 33773;33774;33775;33776;33777;33778;33779;33780;33781 33780 9 6993700 59773000 18031000 MFIGGLSWDTTK PRHSEAATAQREEWKMFIGGLSWDTTKKDL EWKMFIGGLSWDTTKKDLKDYFSKFGEVVD K M F T K K 0 0 0 1 0 0 0 2 0 1 1 1 1 1 0 1 2 1 0 0 0 0 12 0 1354.6591 Q14103 Q14103 99 110 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS By MS/MS 5.19 1.63 1 2 2 4 3 3 1 3 8 5 252160000 12332000 126400000 113420000 9574 1281 9985;9986 40560;40561;40562;40563;40564;40565;40566;40567;40568;40569;40570;40571;40572;40573;40574;40575 33782;33783;33784;33785;33786;33787;33788;33789;33790;33791;33792;33793 33790 592 11 12696000 36904000 17208000 MFIGGLSWDTTKK PRHSEAATAQREEWKMFIGGLSWDTTKKDL WKMFIGGLSWDTTKKDLKDYFSKFGEVVDC K M F K K D 0 0 0 1 0 0 0 2 0 1 1 2 1 1 0 1 2 1 0 0 0 0 13 1 1482.7541 Q14103 Q14103 99 111 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2;3 6.0415E-12 120.36 By MS/MS By MS/MS 4.76 1.06 2 5 6 3 1 9 8 221850000 0 118250000 103600000 9575 1281 9987;9988 40576;40577;40578;40579;40580;40581;40582;40583;40584;40585;40586;40587;40588;40589;40590;40591;40592 33794;33795;33796;33797;33798;33799;33800;33801;33802;33803;33804 33798 592 11 0 31449000 15010000 MFIGGLSWQTSPDSLR GTSGSANDSQHDPGKMFIGGLSWQTSPDSL FIGGLSWQTSPDSLRDYFSKFGEIRECMVM K M F L R D 0 1 0 1 0 1 0 2 0 1 2 0 1 1 1 3 1 1 0 0 0 0 16 0 1793.8771 Q96DH6 Q96DH6 23 38 MSI2 RNA-binding protein Musashi homolog 2 yes yes 2 1.0532E-05 153.95 By MS/MS By MS/MS 6 0 2 1 1 7690100 0 2488900 5201300 9576 1766 9989 40593;40594 33805;33806 33806 2 0 861560 778170 MFILSDGEGK VCFVGRLEKIHPTGKMFILSDGEGKNGTIE HPTGKMFILSDGEGKNGTIELMEPLDEEIS K M F G K N 0 0 0 1 0 0 1 2 0 1 1 1 1 1 0 1 0 0 0 0 0 0 10 0 1095.527 P35244 P35244 40 49 RPA3 Replication protein A 14 kDa subunit yes yes 2 0.0020499 107 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 13157000 0 7366300 5790500 9577 743 9990;9991 40595;40596;40597 33807;33808 33807 335 2 0 37268000 2623900 MFLNLLSPR FQISNVTGENLDLLKMFLNLLSPRTSYREE NLDLLKMFLNLLSPRTSYREEEPAEFQIDD K M F P R T 0 1 1 0 0 0 0 0 0 0 3 0 1 1 1 1 0 0 0 0 0 0 9 0 1089.6005 O00178 O00178 378 386 GTPBP1 GTP-binding protein 1 yes yes 2 0.00072238 113.71 By MS/MS 3 0 1 1 3486300 0 3486300 0 9578 110 9992 40598 33809 33809 1 0 1486200 0 MFLQYYLNEQGDR ______________________________ ______________________________ - M F D R V 0 1 1 1 0 2 1 1 0 0 2 0 1 1 0 0 0 0 2 0 0 0 13 0 1675.7664 Q9NPE3 Q9NPE3 1 13 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 2 0.0008462 117.67 By MS/MS 9 0 1 1 3988900 0 0 3988900 9579 2026 9993 40599 33810 33810 693 1 0 0 1274200 MFLSFPTTK VGGHAAEYGAEALERMFLSFPTTKTYFPHF AEALERMFLSFPTTKTYFPHFDLSHGSAQV R M F T K T 0 0 0 0 0 0 0 0 0 0 1 1 1 2 1 1 2 0 0 0 0 0 9 0 1070.5471 P69905;CON__P01966 CON__P01966 33 41 HBA1 Hemoglobin subunit alpha no no 2 0.00048519 131.06 By MS/MS By MS/MS By MS/MS 7.38 2.76 2 2 1 2 2 3 3 5 8 11 17 10 12 4100000000 1196500000 436920000 2466500000 + 9580 34;1082 9994;9995 40600;40601;40602;40603;40604;40605;40606;40607;40608;40609;40610;40611;40612;40613;40614;40615;40616;40617;40618;40619;40620;40621;40622;40623;40624;40625;40626;40627;40628;40629;40630;40631;40632;40633;40634;40635;40636;40637;40638 33811;33812;33813;33814;33815;33816;33817;33818;33819;33820;33821;33822;33823;33824;33825;33826;33827;33828;33829;33830;33831;33832;33833;33834;33835;33836;33837;33838;33839;33840;33841;33842;33843;33844;33845;33846;33847;33848;33849;33850;33851;33852;33853 33825 8 43 1039100000 961320000 1238600000 MFLYNLTLQR ______________________________ ______________________________ - M F Q R A 0 1 1 0 0 1 0 0 0 0 3 0 1 1 0 0 1 0 1 0 0 0 10 0 1297.6853 Q15393 Q15393 1 10 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.00055623 134.48 By matching By MS/MS By MS/MS 2 1.1 2 2 1 1 2 2 12790000 553410 517550 11720000 9581 1361 9996;9997 40639;40640;40641;40642;40643 33854;33855;33856 33856 3 553410 233060 2596100 MFPFIMEGTK RAILNRMCLVYPASKMFPFIMEGTKSKNSK YPASKMFPFIMEGTKSKNSKQRAECLEELG K M F T K S 0 0 0 0 0 0 1 1 0 1 0 1 2 2 1 0 1 0 0 0 0 0 10 0 1199.5719 Q14008 Q14008 1325 1334 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0014824 108.98 By MS/MS 1 0 1 1 5671500 0 0 5671500 9582 1279 9998 40644 33857;33858;33859;33860;33861 33859 5 0 0 1222000 MFPHHSITESVNYDVK VGRRSSLSSRGTPTRMFPHHSITESVNYDV FPHHSITESVNYDVKTFGSSLPVKVMEALT R M F V K T 0 0 1 1 0 0 1 0 2 1 0 1 1 1 1 2 1 0 1 2 0 0 16 0 1902.8934 Q8WUM0 Q8WUM0 67 82 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.028048 44.045 By MS/MS 2 0 1 1 5452100 0 0 5452100 9583 1675 9999 40645 33862 33862 1 0 0 1232100 MFQAAGAAQATPSHDAK ______________________________ QAAGAAQATPSHDAKGGGSSTVQRSKSFSL - M F A K G 6 0 0 1 0 2 0 1 1 0 0 1 1 1 1 1 1 0 0 0 0 0 17 0 1700.7941 Q9BT23 Q9BT23 1 17 LIMD2 LIM domain-containing protein 2 yes yes 2 5.0155E-14 181.98 By MS/MS 8 0 1 1 4021700 0 4021700 0 9584 1899 10000 40646 33863 33863 1 0 1829700 0 MFQLPVNNLGSLR ______________________________ ______________________________ - M F L R K 0 1 2 0 0 1 0 1 0 0 3 0 1 1 1 1 0 0 0 1 0 0 13 0 1487.7919 Q9H2P0 Q9H2P0 1 13 ADNP Activity-dependent neuroprotector homeobox protein yes yes 2 0.00058419 112.13 By MS/MS By MS/MS 4 2.4 2 1 1 1 1 2 6 2 11618000 0 8098400 3519700 9585 1975 10001 40647;40648;40649;40650;40651;40652;40653;40654 33864;33865;33866;33867;33868;33869;33870;33871 33870 8 0 3153200 715180 MFSFNMFDHPIPR ______________________________ ______________________________ - M F P R V 0 1 1 1 0 0 0 0 1 1 0 0 2 3 2 1 0 0 0 0 0 0 13 0 1637.7483 Q92890 Q92890 1 13 UFD1L Ubiquitin fusion degradation protein 1 homolog yes yes 2 0.0092655 78.653 By MS/MS 6 0 1 1 1847600 0 1847600 0 9586 1728 10002 40655 33872 33872 1 0 639580 0 MFVGGLSWDTSK GDQINASKNEEDAGKMFVGGLSWDTSKKDL AGKMFVGGLSWDTSKKDLKDYFTKFGEVVD K M F S K K 0 0 0 1 0 0 0 2 0 0 1 1 1 1 0 2 1 1 0 1 0 0 12 0 1326.6278 Q99729 Q99729 71 82 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS 4.93 1.83 1 1 1 2 2 4 3 8 6 284600000 0 136830000 147770000 9587 1861 10003;10004 40656;40657;40658;40659;40660;40661;40662;40663;40664;40665;40666;40667;40668;40669 33873;33874;33875;33876;33877;33878;33879;33880;33881;33882 33877 673 10 0 41010000 21565000 MFVGGLSWDTSKK GDQINASKNEEDAGKMFVGGLSWDTSKKDL GKMFVGGLSWDTSKKDLKDYFTKFGEVVDC K M F K K D 0 0 0 1 0 0 0 2 0 0 1 2 1 1 0 2 1 1 0 1 0 0 13 1 1454.7228 Q99729 Q99729 71 83 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2;3 3.5609E-07 169.37 By MS/MS By MS/MS 5.14 0.639 1 4 2 3 4 233380000 0 114140000 119240000 9588 1861 10005 40670;40671;40672;40673;40674;40675;40676 33883;33884;33885;33886;33887 33887 5 0 33018000 16800000 MFVGQVPR GTLDHPDQPDLDAIKMFVGQVPRTWSEKDL PDLDAIKMFVGQVPRTWSEKDLRELFEQYG K M F P R T 0 1 0 0 0 1 0 1 0 0 0 0 1 1 1 0 0 0 0 2 0 0 8 0 932.49021 Q92879 Q92879 18 25 CELF1 CUGBP Elav-like family member 1 yes yes 2 0.00015507 143.18 By MS/MS By matching 5.25 1.79 1 1 2 3 1 22657000 0 17144000 5513800 9589 1727 10006 40677;40678;40679;40680 33888;33889 33888 2 0 6711700 978400 MFVLDEADEMLSR FDMLNRRYLSPKYIKMFVLDEADEMLSRGF IKMFVLDEADEMLSRGFKDQIYDIFQKLNS K M F S R G 1 1 0 2 0 0 2 0 0 0 2 0 2 1 0 1 0 0 0 1 0 0 13 0 1554.7058 P60842;Q14240 P60842 178 190 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 9.0729E-34 208.11 By MS/MS By MS/MS By MS/MS 5.5 0.764 4 1 1 1 1 4 63289000 7949300 7817900 47521000 9590 967;1294 10007;10008 40681;40682;40683;40684;40685;40686 33890;33891;33892;33893;33894 33892 469 5 6368400 2015200 6722600 MFYGNSDDIGVFLSK ISDSDKRKHFMLSVKMFYGNSDDIGVFLSK MFYGNSDDIGVFLSKRIKVISKPSKKKQSL K M F S K R 0 0 1 2 0 0 0 2 0 1 1 1 1 2 0 2 0 0 1 1 0 0 15 0 1691.7865 Q06330 Q06330 145 159 RBPJ Recombining binding protein suppressor of hairless yes yes 2 0.066385 56.493 By MS/MS 4.5 1.12 1 1 1 1 4 30172000 0 0 30172000 9591 1170 10009 40687;40688;40689;40690 33895 33895 1 0 0 4786600 MGAGLGHGMDR MGPGIDRLGGAGMERMGAGLGHGMDRVGSE GMERMGAGLGHGMDRVGSEIERMGLVMDRM R M G D R V 1 1 0 1 0 0 0 4 1 0 1 0 2 0 0 0 0 0 0 0 0 0 11 0 1100.4855 P52272 P52272 419 429 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00032812 128.86 By MS/MS By MS/MS 3.71 1.28 1 3 1 1 1 3 4 92731000 0 17523000 75208000 9592 902 10010;10011 40691;40692;40693;40694;40695;40696;40697 33896;33897;33898;33899 33897 429 4 0 7294500 14071000 MGAGMGFGLER RMGQTMERIGSGVERMGAGMGFGLERMAAP GVERMGAGMGFGLERMAAPIDRVGQTIERM R M G E R M 1 1 0 0 0 0 1 4 0 0 1 0 2 1 0 0 0 0 0 0 0 0 11 0 1124.5107 P52272 P52272 486 496 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 1.5495E-35 207.29 By MS/MS By MS/MS By MS/MS 3.74 1.65 4 6 5 2 1 1 3 11 5 503320000 34321000 230580000 238420000 9593 902 10012;10013 40698;40699;40700;40701;40702;40703;40704;40705;40706;40707;40708;40709;40710;40711;40712;40713;40714;40715;40716 33900;33901;33902;33903;33904;33905;33906;33907;33908;33909;33910 33902 430;431 11 36956000 93315000 44110000 MGANNLER RMGPVMDRMATGLERMGANNLERMGLERMG MATGLERMGANNLERMGLERMGANSLERMG R M G E R M 1 1 2 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 8 0 903.42325 P52272 P52272 558 565 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 8.2782E-06 154.01 By MS/MS By MS/MS 4.11 2.02 1 1 2 2 1 2 5 4 91850000 0 24946000 66904000 9594 902 10014 40717;40718;40719;40720;40721;40722;40723;40724;40725 33911;33912;33913;33914;33915 33911 5 0 10570000 12910000 MGANSLER ERMGANNLERMGLERMGANSLERMGLERMG ERMGLERMGANSLERMGLERMGANSLERMG R M G E R M 1 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 8 0 876.41235 P52272 P52272 571 578 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes no 2 7.595E-20 185.42 By MS/MS By MS/MS By MS/MS 4.86 2.17 3 1 1 1 1 1 3 3 197750000 9626000 50386000 137740000 9595 902 10015 40726;40727;40728;40729;40730;40731;40732 33916;33917;33918;33919;33920;33921 33920 6 11106000 22419000 26497000 MGESDDSILR NGQFKTYAICGAIRRMGESDDSILRLAKAD GAIRRMGESDDSILRLAKADGIVSKNF___ R M G L R L 0 1 0 2 0 0 1 1 0 1 1 0 1 0 0 2 0 0 0 0 0 0 10 0 1121.5023 P63220 P63220 62 71 RPS21 40S ribosomal protein S21 yes yes 2 3.1356E-07 160.26 By MS/MS By MS/MS 9.67 0.471 2 4 2 4 100340000 0 17334000 83001000 9596 1066 10016;10017 40733;40734;40735;40736;40737;40738 33922;33923;33924;33925;33926;33927 33927 512 6 0 87697000 121890000 MGFTEVTPVTGASLR AALRVLIGENEKAERMGFTEVTPVTGASLR MGFTEVTPVTGASLRRTMLLLSRSPEAQPK R M G L R R 1 1 0 0 0 0 1 2 0 0 1 0 1 1 1 1 3 0 0 2 0 0 15 0 1564.7919 P55265 P55265 802 816 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 3.7432E-05 160.15 By MS/MS By MS/MS 3.33 1.15 1 1 2 4 1 4 5 79903000 0 24032000 55871000 9597 941 10018;10019 40739;40740;40741;40742;40743;40744;40745;40746;40747 33928;33929;33930;33931;33932;33933;33934 33929 453 7 0 8085500 11294000 MGGDIANR QEQTIAEDLVVTKYKMGGDIANRVLRSLVE LVVTKYKMGGDIANRVLRSLVEASSSGVSV K M G N R V 1 1 1 1 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 8 0 832.38614 Q9UQ80 Q9UQ80 23 30 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.0036154 104.45 By MS/MS 5 0 1 1 2970300 0 2970300 0 9598 2220 10020 40748 33935 33935 1 0 765650 0 MGGEEAEIR HVALLSVFQAWDDARMGGEEAEIRFCEHKR AWDDARMGGEEAEIRFCEHKRLNMATLRMT R M G I R F 1 1 0 0 0 0 3 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 9 0 990.44404 Q08211 Q08211 930 938 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00072693 131.06 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 51048000 0 33723000 17325000 9599 1182 10021;10022 40749;40750;40751;40752;40753 33936;33937;33938 33937 563 3 0 15186000 3517700 MGGFGSIIQLYPGGGPVR METCAGLVLGAMMERMGGFGSIIQLYPGGG FGSIIQLYPGGGPVRAATACFGFPKSFLSG R M G V R A 0 1 0 0 0 1 0 6 0 2 1 0 1 1 2 1 0 0 1 1 0 0 18 0 1804.9294 Q9UJA5 Q9UJA5 221 238 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 2.1726E-09 156.71 By MS/MS By matching 3.67 0.471 1 2 2 1 21199000 0 15235000 5964000 9600 2168 10023 40754;40755;40756 33939;33940 33940 2 0 5174800 974120 MGGGGAMNMGDPYGSGGQK YSRMGYMDPRERDMRMGGGGAMNMGDPYGS GAMNMGDPYGSGGQKFPPLGGGGGIGYEAN R M G Q K F 1 0 1 1 0 1 0 8 0 0 0 1 3 0 1 1 0 0 1 0 0 0 19 0 1770.7124 P23246 P23246 612 630 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 1.1502E-51 217.88 By MS/MS By MS/MS By MS/MS 2.68 1.35 3 12 5 2 1 2 2 10 13 524680000 16590000 127510000 380580000 9601 638 10024;10025;10026 40757;40758;40759;40760;40761;40762;40763;40764;40765;40766;40767;40768;40769;40770;40771;40772;40773;40774;40775;40776;40777;40778;40779;40780;40781 33941;33942;33943;33944;33945;33946;33947;33948;33949;33950;33951;33952;33953;33954;33955;33956;33957;33958;33959;33960;33961;33962 33944 287;288;289 22 19989000 56708000 78793000 MGGGSIEVSVPR DQADFRGVRGDFNSRMGGGSIEVSVPRFAV NSRMGGGSIEVSVPRFAVGIVIGRNGEMIK R M G P R F 0 1 0 0 0 0 1 3 0 1 0 0 1 0 1 2 0 0 0 2 0 0 12 0 1187.5969 Q96I24 Q96I24 251 262 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.00052923 126.29 By MS/MS By MS/MS 3.5 1.5 1 1 2 2 1 1 5 3 114830000 0 69982000 44850000 9602 1797 10027;10028 40782;40783;40784;40785;40786;40787;40788;40789 33963;33964;33965;33966 33966 667 4 0 24577000 8335300 MGGMEGPFGGGMENMGR PAGMGMEGIGFGINKMGGMEGPFGGGMENM GMEGPFGGGMENMGRFGSGMNMGRINEILS K M G G R F 0 1 1 0 0 0 2 7 0 0 0 0 4 1 1 0 0 0 0 0 0 0 17 0 1713.6732 P52272 P52272 346 362 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 1.2144E-48 226.73 By MS/MS By MS/MS By MS/MS 3.12 0.963 1 3 7 5 1 1 5 11 204550000 9153000 23191000 172210000 9603 902 10029;10030;10031 40790;40791;40792;40793;40794;40795;40796;40797;40798;40799;40800;40801;40802;40803;40804;40805;40806 33967;33968;33969;33970;33971;33972;33973;33974;33975;33976;33977;33978;33979;33980;33981;33982;33983 33973 432;433;434;435 17 10560000 8721500 32560000 MGHTVTVWNR GLGLMGSGIVSNLLKMGHTVTVWNRTAEKC SNLLKMGHTVTVWNRTAEKCDLFIQEGARL K M G N R T 0 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 2 1 0 2 0 0 10 0 1199.587 Q49A26 Q49A26 289 298 GLYR1 Putative oxidoreductase GLYR1 yes yes 3 6.9748E-05 118.71 By MS/MS By MS/MS 4 0 2 1 1 10831000 0 4001600 6829300 9604 1417 10032 40807;40808 33984;33985 33985 2 0 1328000 1115500 MGIYYIPVLGPAPR YPNSGMLLTANETPKMGIYYIPVLGPAPRW KMGIYYIPVLGPAPRWCSFLDNLTEELEEN K M G P R W 1 1 0 0 0 0 0 2 0 2 1 0 1 0 3 0 0 0 2 1 0 0 14 0 1545.8378 Q9BSC4 Q9BSC4 336 349 NOL10 Nucleolar protein 10 yes yes 2 0.0067518 85.862 By MS/MS By MS/MS 2.67 1.25 1 1 1 1 2 8834500 0 4055600 4778900 9605 1895 10033 40809;40810;40811 33986;33987 33987 2 0 1728900 961070 MGKPSAPQEAEDNMK SLGLLLVFLGILWVKMGKPSAPQEAEDNMK MGKPSAPQEAEDNMKLLPVDCERKTDEFCQ K M G M K L 2 0 1 1 0 1 2 1 0 0 0 2 2 0 2 1 0 0 0 0 0 0 15 1 1631.7283 Q8NC56 Q8NC56 233 247 LEMD2 LEM domain-containing protein 2 yes yes 2 0.057448 78.548 By MS/MS 4 0 1 1 4511500 0 0 4511500 9606 1631 10034 40812 33988 33988 1 0 0 736870 MGLAMGGGGGASFDR MGPAMGPALGAGIERMGLAMGGGGGASFDR MGLAMGGGGGASFDRAIEMERGNFGGSFAG R M G D R A 2 1 0 1 0 0 0 6 0 0 1 0 2 1 0 1 0 0 0 0 0 0 15 0 1382.6071 P52272 P52272 607 621 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 4.7846E-25 199.7 By MS/MS By MS/MS By MS/MS 3.78 1.36 12 3 1 2 4 7 7 299560000 31262000 113680000 154620000 9607 902 10035;10036;10037 40813;40814;40815;40816;40817;40818;40819;40820;40821;40822;40823;40824;40825;40826;40827;40828;40829;40830 33989;33990;33991;33992;33993;33994;33995;33996;33997;33998;33999;34000;34001;34002;34003;34004;34005;34006;34007;34008;34009 33991 436;437 21 36069000 47979000 29467000 MGLEVIPVTSTTNK EDTWKAYCEKQKRIRMGLEVIPVTSTTNKI RMGLEVIPVTSTTNKITAEDCTMEVTPGAE R M G N K I 0 0 1 0 0 0 1 1 0 1 1 1 1 0 1 1 3 0 0 2 0 0 14 0 1488.7858 Q6UN15 Q6UN15 197 210 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 2 0.002519 99.215 By MS/MS 3 0 1 1 10720000 0 10720000 0 9608 1503 10038 40831 34010 34010 1 0 4570100 0 MGLSMER RMGSGVERMGPAIERMGLSMERMVPAGMGA RMGPAIERMGLSMERMVPAGMGAGLERMGP R M G E R M 0 1 0 0 0 0 1 1 0 0 1 0 2 0 0 1 0 0 0 0 0 0 7 0 822.37279 P52272 P52272 525 531 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 1.4006E-07 170.17 By MS/MS By MS/MS By MS/MS 2.4 0.8 1 1 3 1 3 1 196460000 12261000 54912000 129290000 9609 902 10039 40832;40833;40834;40835;40836 34011;34012;34013;34014;34015 34015 5 14147000 23636000 25076000 MGLVDQLVEPLGPGLKPPEER MMLTGRSIRADRAKKMGLVDQLVEPLGPGL LVEPLGPGLKPPEERTIEYLEEVAITFAKG K M G E R T 0 1 0 1 0 1 3 3 0 0 4 1 1 0 4 0 0 0 0 2 0 0 21 1 2273.209 P40939 P40939 215 235 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 3 3.0087E-14 124.35 By MS/MS 3 0 1 1 7689100 0 0 7689100 9610 789 10040 40837 34016 34016 1 0 0 1491300 MGLVMDR GLGHGMDRVGSEIERMGLVMDRMGSVERMG RVGSEIERMGLVMDRMGSVERMGSGIERMG R M G D R M 0 1 0 1 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 0 7 0 820.39353 P52272 P52272 437 443 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.0072048 124.89 By matching By MS/MS By MS/MS 3.09 1.08 1 2 4 3 1 2 4 5 332030000 15435000 99169000 217430000 9611 902 10041;10042 40838;40839;40840;40841;40842;40843;40844;40845;40846;40847;40848 34017;34018;34019;34020;34021;34022;34023;34024;34025 34019 9 16955000 40560000 41266000 MGMGNNYSGGYGTPDGLGGYGR RDGMDNQGGYGSVGRMGMGNNYSGGYGTPD SGGYGTPDGLGGYGRGGGGSGGYYGQGGMS R M G G R G 0 1 2 1 0 0 0 9 0 0 1 0 2 0 1 1 1 0 3 0 0 0 22 0 2179.9051 P31942 P31942 302 323 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 2.1392E-148 271.56 By MS/MS By MS/MS 6 0 5 3 2 55061000 0 26076000 28985000 9612 721 10043;10044 40849;40850;40851;40852;40853 34026;34027;34028;34029 34029 322 4 0 9026600 4336500 MGPAMGPALGAGIER ERMGLERMGANSLERMGPAMGPALGAGIER MGPAMGPALGAGIERMGLAMGGGGGASFDR R M G E R M 3 1 0 0 0 0 1 4 0 1 1 0 2 0 2 0 0 0 0 0 0 0 15 0 1426.7061 P52272 P52272 592 606 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00021616 150.46 By MS/MS By MS/MS By MS/MS 3.81 1.9 2 6 13 6 1 4 2 1 1 5 16 15 1271000000 46258000 478010000 746740000 9613 902 10045;10046;10047 40854;40855;40856;40857;40858;40859;40860;40861;40862;40863;40864;40865;40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879;40880;40881;40882;40883;40884;40885;40886;40887;40888;40889 34030;34031;34032;34033;34034;34035;34036;34037;34038;34039;34040;34041;34042;34043;34044;34045;34046;34047;34048;34049;34050;34051;34052;34053;34054;34055;34056;34057;34058;34059;34060;34061;34062 34052 438;439 33 52652000 201340000 142600000 MGPGIGAILER GMGMGLDRMSSSFDRMGPGIGAILERSIDM SFDRMGPGIGAILERSIDMDRGFLSGPMGS R M G E R S 1 1 0 0 0 0 1 3 0 2 1 0 1 0 1 0 0 0 0 0 0 0 11 0 1112.6012 Q9P2K5 Q9P2K5 487 497 MYEF2 Myelin expression factor 2 yes yes 2 0.00032792 127.4 By matching By MS/MS By MS/MS 2.88 1.36 2 1 2 2 1 1 4 3 49899000 1465800 20270000 28164000 9614 2125 10048 40890;40891;40892;40893;40894;40895;40896;40897 34063;34064;34065 34064 3 1465800 7543300 5164200 MGPLGLDHMASSIER DRMGSVERMGSGIERMGPLGLDHMASSIER MGPLGLDHMASSIERMGQTMERIGSGVERM R M G E R M 1 1 0 1 0 0 1 2 1 1 2 0 2 0 1 2 0 0 0 0 0 0 15 0 1612.7701 P52272 P52272 457 471 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 1.3423E-08 174.21 By MS/MS By MS/MS By MS/MS 3.92 2.06 4 6 16 10 5 4 2 1 2 2 24 24 1576500000 35153000 414340000 1127000000 9615 902 10049;10050;10051 40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916;40917;40918;40919;40920;40921;40922;40923;40924;40925;40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947 34066;34067;34068;34069;34070;34071;34072;34073;34074;34075;34076;34077;34078;34079;34080;34081;34082;34083;34084;34085;34086;34087;34088;34089;34090;34091;34092;34093;34094;34095;34096;34097;34098;34099;34100;34101 34076 440;441 36 40558000 165680000 216220000 MGPNIYELR QLLLEFSFWNEPQPRMGPNIYELRTYKLKP NEPQPRMGPNIYELRTYKLKPGTMIEWGNN R M G L R T 0 1 1 0 0 0 1 1 0 1 1 0 1 0 1 0 0 0 1 0 0 0 9 0 1091.5434 Q9BPW8 Q9BPW8 180 188 NIPSNAP1 Protein NipSnap homolog 1 yes yes 2 0.0058055 95.605 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 34086000 0 27153000 6932900 9616 1872 10052 40948;40949;40950 34102;34103;34104 34103 3 0 14094000 1230200 MGPSGGEGMEPERR QISNIKYHEEFEKSRMGPSGGEGMEPERRD RMGPSGGEGMEPERRDSQDGSSYRRPLEQQ R M G R R D 0 2 0 0 0 0 3 4 0 0 0 0 2 0 2 1 0 0 0 0 0 0 14 1 1488.6449 Q14847 Q14847 131 144 LASP1 LIM and SH3 domain protein 1 yes yes 3 0.00048403 97.86 By matching By MS/MS 6 0.707 1 2 1 1 3 10216000 2005800 0 8210000 9617 1322 10053 40951;40952;40953;40954 34105;34106 34106 2 2670700 0 1244600 MGPVMDR MERMVPAGMGAGLERMGPVMDRMATGLERM GMGAGLERMGPVMDRMATGLERMGANNLER R M G D R M 0 1 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 1 0 0 7 0 804.36223 P52272 P52272 544 550 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.0035436 130.05 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 3 2 145960000 0 46589000 99374000 9618 902 10054 40955;40956;40957;40958;40959 34107;34108 34107 2 0 19996000 19087000 MGQAPSQSLLPPAQDQPR QSRMTSERAPSPSSRMGQAPSQSLLPPAQD APSQSLLPPAQDQPRSPVPSAFSDQSRCLI R M G P R S 2 1 0 1 0 4 0 1 0 0 2 0 1 0 4 2 0 0 0 0 0 0 18 0 1919.9523 Q9UQ35 Q9UQ35 2431 2448 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 1.7237E-08 135.02 By MS/MS 2.6 1.02 1 1 2 1 5 29566000 0 0 29566000 9619 2219 10055;10056 40960;40961;40962;40963;40964 34109;34110;34111 34110 710 3 0 0 5621300 MGQHSSNVQWR MKGHFYMHAGSLLLKMGQHSSNVQWRALSE LLLKMGQHSSNVQWRALSELAALCYLIAFQ K M G W R A 0 1 1 0 0 2 0 1 1 0 0 0 1 0 0 2 0 1 0 1 0 0 11 0 1328.6044 P49792 P49792 300 310 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3 0.00079708 102.95 By MS/MS 1.5 0.5 1 1 2 8923900 0 0 8923900 9620 871 10057 40965;40966 34112 34112 1 0 0 1941100 MGQMAMGGAMGINNR GFKGTFPDAREQEIRMGQMAMGGAMGINNR MGQMAMGGAMGINNRGAMPPAPVPAGTPAP R M G N R G 2 1 2 0 0 1 0 4 0 1 0 0 4 0 0 0 0 0 0 0 0 0 15 0 1537.6622 Q15233 Q15233 384 398 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 2.0289E-58 232.79 By MS/MS By MS/MS By MS/MS 3.74 1.15 2 1 9 19 1 2 1 3 15 17 846490000 23239000 307120000 516140000 9621 1351 10058;10059;10060 40967;40968;40969;40970;40971;40972;40973;40974;40975;40976;40977;40978;40979;40980;40981;40982;40983;40984;40985;40986;40987;40988;40989;40990;40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001 34113;34114;34115;34116;34117;34118;34119;34120;34121;34122;34123;34124;34125;34126;34127;34128;34129;34130;34131;34132;34133;34134;34135;34136;34137;34138;34139;34140;34141;34142;34143;34144;34145;34146 34133 614;615;616;617 32 18396000 102500000 88933000 MGQTMER MGPLGLDHMASSIERMGQTMERIGSGVERM HMASSIERMGQTMERIGSGVERMGAGMGFG R M G E R I 0 1 0 0 0 1 1 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 7 0 851.36296 P52272 P52272 472 478 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.019914 102.71 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 3088400 0 2039700 1048700 9622 902 10061 41002;41003;41004 34147;34148;34149;34150;34151 34148 5 0 862610 203400 MGSQVIIPYR ATGFLGRYVVNHLGRMGSQVIIPYRCDKYD NHLGRMGSQVIIPYRCDKYDIMHLRPMGDL R M G Y R C 0 1 0 0 0 1 0 1 0 2 0 0 1 0 1 1 0 0 1 1 0 0 10 0 1162.6169 Q16795 Q16795 76 85 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2 0.0040552 100.02 By matching By MS/MS 6 0 2 1 1 14150000 4233000 0 9916900 9623 1400 10062 41005;41006 34152 34152 1 5636300 0 1483700 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGR LLSSGRVQLVVGDGRMGYAEEAPYDAIHVG VVPQALIDQLKPGGRLILPVGPAGGNQMLE R M G G R L 7 1 0 2 0 2 2 4 1 2 2 1 1 0 4 0 0 0 2 3 0 0 34 1 3503.7871 P22061 P22061 145 178 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes yes 4 0.010378 26.686 By MS/MS 7 0 1 1 8603300 0 0 8603300 9624 626 10063 41007 34153 34153 1 0 0 1526600 MGYMDPR MEEQMRRQREESYSRMGYMDPRERDMRMGG QREESYSRMGYMDPRERDMRMGGGGAMNMG R M G P R E 0 1 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 1 0 0 0 7 0 868.35714 P23246 P23246 600 606 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.044859 78.616 By matching By MS/MS 3.29 1.67 1 2 1 1 1 1 2 5 116290000 0 35153000 81142000 9625 638 10064 41008;41009;41010;41011;41012;41013;41014 34154;34155 34155 2 0 15909000 15805000 MHDLNTDQENLVGTHDAPIR DPTHAWSGGLDHQLKMHDLNTDQENLVGTH TDQENLVGTHDAPIRCVEYCPEVNVMVTGS K M H I R C 1 1 2 3 0 1 1 1 2 1 2 0 1 0 1 0 2 0 0 1 0 0 20 0 2275.0651 O43684 O43684 81 100 BUB3 Mitotic checkpoint protein BUB3 yes yes 3;4 5.1305E-14 145.75 By MS/MS 5.67 0.471 1 2 3 49052000 0 0 49052000 9626 209 10065 41015;41016;41017 34156;34157 34157 2 0 0 7134000 MHNQIPQVTSDGK ADGLLSQGYSDFINRMHNQIPQVTSDGKRL NRMHNQIPQVTSDGKRLQVIVCSATLHSFD R M H G K R 0 0 1 1 0 2 0 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 13 0 1453.6984 Q92499 Q92499 387 399 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2;3 0.0010811 106.4 By MS/MS 3 0 2 2 9343000 0 0 9343000 9627 1705 10066 41018;41019 34158;34159 34159 1 0 0 1812100 MHNQIPQVTSDGKR ADGLLSQGYSDFINRMHNQIPQVTSDGKRL RMHNQIPQVTSDGKRLQVIVCSATLHSFDV R M H K R L 0 1 1 1 0 2 0 1 1 1 0 1 1 0 1 1 1 0 0 1 0 0 14 1 1609.7995 Q92499 Q92499 387 400 DDX1 ATP-dependent RNA helicase DDX1 yes yes 3;4 0.0063318 67.234 By MS/MS By MS/MS 3 0 3 2 1 12039000 0 6253100 5786400 9628 1705 10067 41020;41021;41022 34160;34161;34162 34161 2 0 2665700 1122300 MHPALSAFPSNIFYEGSLQNGVTAADR VVLGIRPIRLQVQYRMHPALSAFPSNIFYE FYEGSLQNGVTAADRVKKGFDFQWPQPDKP R M H D R V 4 1 2 1 0 1 1 2 1 1 2 0 1 2 2 3 1 0 1 1 0 0 27 0 2892.3865 Q92900 Q92900 715 741 UPF1 Regulator of nonsense transcripts 1 yes yes 3 1.2272E-20 101.45 By MS/MS 2 0 1 1 3499500 0 3499500 0 9629 1729 10068 41023 34163 34163 1 0 1575900 0 MHTTFEHDIQALGTQVR EELGRDQNTVETLQRMHTTFEHDIQALGTQ TTFEHDIQALGTQVRQLQEDAARLQAAYAG R M H V R Q 1 1 0 1 0 2 1 1 2 1 1 0 1 1 0 0 3 0 0 1 0 0 17 0 1982.9632 Q01082 Q01082 1845 1861 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 2.9703E-111 269.7 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 55827000 0 9014300 46813000 9630 1128 10069;10070 41024;41025;41026;41027 34164;34165;34166 34166 540 3 0 4335800 10087000 MHVQLSTSR EAIRGLDNTEFQGKRMHVQLSTSRLRTAPG EFQGKRMHVQLSTSRLRTAPGMGDQSGCYR R M H S R L 0 1 0 0 0 1 0 0 1 0 1 0 1 0 0 2 1 0 0 1 0 0 9 0 1057.5339 Q9BWF3;Q9BQ04 Q9BWF3 141 149 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2 0.00045749 123.72 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 27890000 0 7806300 20084000 9631 1924 10071 41028;41029;41030;41031;41032 34167;34168;34169 34168 3 0 2817100 2960800 MIAAQLLAYYFTELKDDQVK ______________________________ LLAYYFTELKDDQVKKIDKYLYAMRLSDET - M I V K K 3 0 0 2 0 2 1 0 0 1 3 2 1 1 0 0 1 0 2 1 0 0 20 1 2359.2134 P19367 P19367 1 20 HK1 Hexokinase-1 yes yes 2 6.9812E-06 92.925 By MS/MS 2 0 1 1 386230 0 0 386230 9632 605 10072 41033 34170 34170 1 0 0 87280 MIAGQVLDINLAAEPK NERNARAAVAGEDGRMIAGQVLDINLAAEP IAGQVLDINLAAEPKVNRGKAGVKRSAAEM R M I P K V 3 0 1 1 0 1 1 1 0 2 2 1 1 0 1 0 0 0 0 1 0 0 16 0 1681.9073 P07910 P07910 74 89 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2;3 1.487E-12 163.71 By MS/MS By MS/MS By MS/MS 5.95 2.03 2 3 4 6 9 5 5 2 2 1 20 17 2570400000 6124400 1826900000 737370000 9633 467 10073;10074 41034;41035;41036;41037;41038;41039;41040;41041;41042;41043;41044;41045;41046;41047;41048;41049;41050;41051;41052;41053;41054;41055;41056;41057;41058;41059;41060;41061;41062;41063;41064;41065;41066;41067;41068;41069;41070;41071 34171;34172;34173;34174;34175;34176;34177;34178;34179;34180;34181;34182;34183;34184;34185;34186;34187;34188;34189;34190;34191;34192;34193;34194;34195;34196;34197;34198;34199;34200;34201;34202;34203;34204;34205;34206;34207 34198 180 37 4906400 640850000 111910000 MIAILTENYGGK RPVIVHRAILGSVERMIAILTENYGGKWPF VERMIAILTENYGGKWPFWLSPRQVMVVPV R M I G K W 1 0 1 0 0 0 1 2 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 0 1308.6748 P26639 P26639 600 611 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 0.00017046 134.25 By MS/MS 6 3 1 1 2 6781000 0 6781000 0 9634 672 10075 41072;41073 34208;34209 34208 2 0 3510400 0 MIASDSHRPEVK REKSTFREESPLRIKMIASDSHRPEVKLKM RIKMIASDSHRPEVKLKMAPVPLDDSNRPA K M I V K L 1 1 0 1 0 0 1 0 1 1 0 1 1 0 1 2 0 0 0 1 0 0 12 1 1368.682 Q9NYF8 Q9NYF8 537 548 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.0021292 95.477 By MS/MS By MS/MS 3.14 1.81 1 2 2 1 1 2 5 34148000 0 9478300 24669000 9635 2097 10076 41074;41075;41076;41077;41078;41079;41080 34210;34211;34212;34213;34214;34215 34213 6 0 4215400 5162900 MIDMGFEPDVQK VLSRCTYVVLDEADRMIDMGFEPDVQKILE ADRMIDMGFEPDVQKILEHMPVSNQKPDTD R M I Q K I 0 0 0 2 0 1 1 1 0 1 0 1 2 1 1 0 0 0 0 1 0 0 12 0 1408.6367 Q9BUQ8 Q9BUQ8 554 565 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.007519 98.257 By matching By MS/MS 1.5 0.5 1 1 1 1 21153000 0 527060 20626000 9636 1909 10077 41081;41082 34216 34216 1 0 257620 4661000 MIDMLAANSGR ELKRGAEIIVCTPGRMIDMLAANSGRVTNL TPGRMIDMLAANSGRVTNLRRVTYVVLDEA R M I G R V 2 1 1 1 0 0 0 1 0 1 1 0 2 0 0 1 0 0 0 0 0 0 11 0 1177.5584 Q7L014 Q7L014 506 516 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.0037749 104.42 By MS/MS 2 0 1 1 5333500 0 5333500 0 9637 1520 10078 41083 34217 34217 1 0 2401700 0 MIDMPVER KDHIMEIFSTYGKIKMIDMPVERMHPHLSK STYGKIKMIDMPVERMHPHLSKGYAYVEFE K M I E R M 0 1 0 1 0 0 1 0 0 1 0 0 2 0 1 0 0 0 0 1 0 0 8 0 989.46742 Q15287 Q15287 189 196 RNPS1 RNA-binding protein with serine-rich domain 1 yes yes 2 8.5169E-06 153.73 By MS/MS By MS/MS 3.71 1.67 1 1 1 1 2 1 1 6 284950000 0 41257000 243690000 9638 1353 10079 41084;41085;41086;41087;41088;41089;41090 34218;34219;34220;34221;34222;34223;34224 34218 7 0 10635000 37229000 MIDSMHQSWLPR SLQQLRFLIIDEADRMIDSMHQSWLPRVVA ADRMIDSMHQSWLPRVVAAAFQSEDPADPC R M I P R V 0 1 0 1 0 1 0 0 1 1 1 0 2 0 1 2 0 1 0 0 0 0 12 0 1499.7013 Q8N8A6 Q8N8A6 376 387 DDX51 ATP-dependent RNA helicase DDX51 yes yes 3 0.042813 51.013 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 5528000 0 1622800 3905200 9639 1615 10080 41091;41092;41093 34225;34226 34226 1 0 691790 723450 MIEAVQNHIGSLNWGYR YGWKVEETVKHDWDRMIEAVQNHIGSLNWG EAVQNHIGSLNWGYRVALREKKVVYENAYG R M I Y R V 1 1 2 0 0 1 1 2 1 2 1 0 1 0 0 1 0 1 1 1 0 0 17 0 1986.9734 Q16881 Q16881 251 267 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes yes 3 0.00025884 90.725 By MS/MS 4 0 1 1 5598400 0 0 5598400 9640 1402 10081 41094 34227 34227 1 0 0 914400 MIEFVVR VVIPTERNLLALIHRMIEFVVREGPMFEAM NLLALIHRMIEFVVREGPMFEAMIMNREIN R M I V R E 0 1 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 2 0 0 7 0 892.48406 O15042 O15042 434 440 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.029951 92.692 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 19060000 0 3832000 15228000 9641 163 10082 41095;41096;41097;41098 34228;34229 34228 2 0 1725600 3303700 MIELLADNINLGDPSSMLK KSTKPGKLIGVANQKMIELLADNINLGDPS LADNINLGDPSSMLKMVEDLISVGEEESFN K M I L K M 1 0 2 2 0 0 1 1 0 2 4 1 2 0 1 2 0 0 0 0 0 0 19 0 2073.0486 Q9H583 Q9H583 664 682 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 8.9245E-09 138.21 By MS/MS By MS/MS 1 0 3 1 2 15656000 0 1393000 14263000 9642 1984 10083;10084 41099;41100;41101 34230;34231;34232 34231 689 3 0 680880 3073200 MIEVVCNDR ______________________________ ______________________________ - M I D R L 0 1 1 1 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 2 0 0 9 0 1134.5162 Q9BZL1 Q9BZL1 1 9 UBL5 Ubiquitin-like protein 5 yes yes 2 0.0007631 112.84 By MS/MS 10 0 1 1 9431000 0 0 9431000 9643 1946 10085 41102 34233 34233 1 0 0 20626000 MIEYDPER AVKRQLRVRTIYESKMIEYDPERRLGIFWV RTIYESKMIEYDPERRLGIFWVSCEAGTYI K M I E R R 0 1 0 1 0 0 2 0 0 1 0 0 1 0 1 0 0 0 1 0 0 0 8 0 1051.4644 O60832 O60832 204 211 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.034597 76.774 By MS/MS 4 0 1 1 12180000 0 0 12180000 9644 235 10086 41103 34234 34234 1 0 0 1989400 MIFDVESMK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY VQDLIKMIFDVESMKKAMVEYEIDLQKMPL K M I M K K 0 0 0 1 0 0 1 0 0 1 0 1 2 1 0 1 0 0 0 1 0 0 9 0 1098.509 P09874 P09874 675 683 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.002059 105.57 By MS/MS By MS/MS 2.56 1.26 2 3 2 1 1 3 6 227670000 0 27822000 199840000 9645 492 10087;10088 41104;41105;41106;41107;41108;41109;41110;41111;41112 34235;34236;34237;34238;34239;34240 34238 212 6 0 12622000 43640000 MIFDVESMKK GTKSKLPKPVQDLIKMIFDVESMKKAMVEY QDLIKMIFDVESMKKAMVEYEIDLQKMPLG K M I K K A 0 0 0 1 0 0 1 0 0 1 0 2 2 1 0 1 0 0 0 1 0 0 10 1 1226.6039 P09874 P09874 675 684 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.0086631 98.033 By MS/MS By MS/MS 2.29 1.13 4 8 2 2 1 6 11 405830000 0 97561000 308270000 9646 492 10089;10090 41113;41114;41115;41116;41117;41118;41119;41120;41121;41122;41123;41124;41125;41126;41127;41128;41129 34241;34242;34243;34244;34245;34246;34247;34248;34249;34250 34248 212 10 0 44183000 67693000 MIGFPSSAGSVSPR EIATYRSLLEGQDAKMIGFPSSAGSVSPRS KMIGFPSSAGSVSPRSTSVTTTSSASVTTT K M I P R S 1 1 0 0 0 0 0 2 0 1 0 0 1 1 2 4 0 0 0 1 0 0 14 0 1391.6867 CON__P13646-1;P13646 P13646 416 429 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.00042528 136.5 By MS/MS 1 0 1 1 40688000 40688000 0 0 + 9647 57;548 10091 41130 34251;34252 34251 2 40688000 0 0 MIGMMLDR PDCGGSIEVMQSFLKMIGMMLDRKRDFELA VMQSFLKMIGMMLDRKRDFELAQAYLALFL K M I D R K 0 1 0 1 0 0 0 1 0 1 1 0 3 0 0 0 0 0 0 0 0 0 8 0 965.44966 Q8NI36 Q8NI36 879 886 WDR36 WD repeat-containing protein 36 yes yes 2 0.026209 79.469 By MS/MS 1 0 1 1 5023100 0 0 5023100 9648 1648 10092 41131 34253 34253 1 0 0 1082300 MIINEELMASLDQPTQTVVMHR MFELDLPTVHSIISKMIINEELMASLDQPT MASLDQPTQTVVMHRTEPTAQQNLALQLAE K M I H R T 1 1 1 1 0 2 2 0 1 2 2 0 3 0 1 1 2 0 0 2 0 0 22 0 2555.2546 Q99613;B5ME19 Q99613 825 846 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 3 5.184E-10 98.269 By MS/MS 2 0 1 1 8170500 0 0 8170500 9649 21 10093 41132 34254 34254 1 0 0 1846400 MIKPFFHSLSEK LVVVDFSATWCGPCKMIKPFFHSLSEKYSN PCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ K M I E K Y 0 0 0 0 0 0 1 0 1 1 1 2 1 2 1 2 0 0 0 0 0 0 12 1 1462.7643 P10599 P10599 37 48 TXN Thioredoxin yes yes 2;3 9.4181E-06 164.31 By MS/MS By MS/MS 6.23 2.97 1 1 1 2 1 1 1 4 1 9 4 187720000 71786000 0 115930000 9650 512 10094;10095 41133;41134;41135;41136;41137;41138;41139;41140;41141;41142;41143;41144;41145 34255;34256;34257;34258;34259;34260 34260 214 6 77419000 0 36733000 MILEIMHK ISVHSTPEGCSSACKMILEIMHKEAKDTKT GCSSACKMILEIMHKEAKDTKTADEVPLKI K M I H K E 0 0 0 0 0 0 1 0 1 2 1 1 2 0 0 0 0 0 0 0 0 0 8 0 1013.5402 Q9NZI8 Q9NZI8 259 266 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.011737 91.626 By MS/MS 4 1 1 1 2 29545000 0 29545000 0 9651 2104 10096;10097 41146;41147 34261;34262 34262 701 2 0 8648600 0 MILEIMQK VTIHATPEGTSEACRMILEIMQKEADETKL GTSEACRMILEIMQKEADETKLAEEIPLKI R M I Q K E 0 0 0 0 0 1 1 0 0 2 1 1 2 0 0 0 0 0 0 0 0 0 8 0 1004.5399 Q9Y6M1 Q9Y6M1 257 264 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 0.0036154 104.45 By MS/MS By MS/MS 3.67 1.33 1 3 3 1 1 6 3 151130000 0 126900000 24226000 9652 2315 10098;10099 41148;41149;41150;41151;41152;41153;41154;41155;41156 34263;34264;34265;34266 34263 3 0 51205000 4671000 MILIQDGSQNTNVDKPLR GGETIKQLQERAGVKMILIQDGSQNTNVDK IQDGSQNTNVDKPLRIIGDPYKVQQACEMV K M I L R I 0 1 2 2 0 2 0 1 0 2 2 1 1 0 1 1 1 0 0 1 0 0 18 1 2041.0626 Q92945 Q92945 267 284 KHSRP Far upstream element-binding protein 2 yes yes 3 3.343E-09 126.63 By MS/MS 3 0 1 1 5037500 0 5037500 0 9653 1733 10100 41157 34267 34267 662 1 0 2147500 0 MILTFEK EEEEEEPLDESSVKKMILTFEKRSYKNQEL LDESSVKKMILTFEKRSYKNQELRIKFPDN K M I E K R 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 7 0 880.47283 Q8WYA6 Q8WYA6 85 91 CTNNBL1 Beta-catenin-like protein 1 yes yes 2 0.024343 97.473 By MS/MS 3 0 1 1 8694600 0 0 8694600 9654 1700 10101 41158 34268 34268 1 0 0 1686300 MINLSVPDTIDER DDLFKAVGDGIVLCKMINLSVPDTIDERAI CKMINLSVPDTIDERAINKKKLTPFIIQEN K M I E R A 0 1 1 2 0 0 1 0 0 2 1 0 1 0 1 1 1 0 0 1 0 0 13 0 1501.7446 P13797;P13796 P13797 169 181 PLS3;LCP1 Plastin-3;Plastin-2 yes no 2 0.002607 107.06 By matching By MS/MS 2.67 0.471 1 2 2 1 16302000 6657800 0 9644100 9655 551 10102 41159;41160;41161 34269 34269 1 7774100 0 1870500 MINTDLSR KAASLKSNYNLPMHKMINTDLSRILKSPEI YNLPMHKMINTDLSRILKSPEIQRALRAPR K M I S R I 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 8 0 948.46987 P36578 P36578 284 291 RPL4 60S ribosomal protein L4 yes yes 2 0.00016649 142.36 By MS/MS By MS/MS 4.3 1.35 1 1 2 5 1 7 3 305960000 0 169450000 136510000 9656 762 10103;10104 41162;41163;41164;41165;41166;41167;41168;41169;41170;41171 34270;34271;34272;34273;34274;34275;34276;34277 34271 378 8 0 48753000 21004000 MIPGGLSEAKPATPEIQEIVDK ______________________________ EAKPATPEIQEIVDKVKPQLEEKTNETYGK - M I D K V 2 0 0 1 0 1 3 2 0 3 1 2 1 0 3 1 1 0 0 1 0 0 22 1 2322.2141 P01040 P01040 1 22 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 3 4.2993E-07 83.905 By MS/MS 6.7 3.03 1 1 1 1 1 1 2 2 10 41236000 41236000 0 0 9657 374 10105;10106 41172;41173;41174;41175;41176;41177;41178;41179;41180;41181 34278;34279;34280;34281;34282;34283 34281 120 6 33700000 0 0 MIQALELDPNLYR AIPKGFMDGKQACEKMIQALELDPNLYRVG EKMIQALELDPNLYRVGQSKIFFRAGVLAQ K M I Y R V 1 1 1 1 0 1 1 0 0 1 3 0 1 0 1 0 0 0 1 0 0 0 13 0 1574.8127 Q7Z406 Q7Z406 767 779 MYH14 Myosin-14 yes yes 2 3.9636E-05 159.4 By MS/MS 1 0 1 1 8696400 0 8696400 0 9658 1531 10107 41182 34284 34284 1 0 4250700 0 MIQDGKGDVTITNDGATILK ADAIRTSLGPKGMDKMIQDGKGDVTITNDG KGDVTITNDGATILKQMQVLHPAARMLVEL K M I L K Q 1 0 1 3 0 1 0 3 0 3 1 2 1 0 0 0 3 0 0 1 0 0 20 1 2089.0725 P50991 P50991 60 79 CCT4 T-complex protein 1 subunit delta yes yes 3 0.0017032 60.602 By MS/MS 4 0 1 1 11947000 0 11947000 0 9659 886 10108 41183 34285 34285 1 0 3964800 0 MIQIQENMAEQK LTADFVNYYFERNMRMIQIQENMAEQKNIK NMRMIQIQENMAEQKNIKDKLENEQEKLHV R M I Q K N 1 0 1 0 0 3 2 0 0 2 0 1 2 0 0 0 0 0 0 0 0 0 12 0 1461.6956 O94880 O94880 630 641 PHF14 PHD finger protein 14 yes yes 2 5.7499E-05 144.77 By MS/MS By MS/MS 2 0 2 1 1 13566000 0 3638600 9927400 9660 301 10109 41184;41185 34286;34287 34286 2 0 1638500 2243400 MIQVYFPK PSGTLRKASWEERDRMIQVYFPKEGRKILT SWEERDRMIQVYFPKEGRKILTPIIFKEEN R M I P K E 0 0 0 0 0 1 0 0 0 1 0 1 1 1 1 0 0 0 1 1 0 0 8 0 1024.5416 P82650 P82650 192 199 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 2 0.023435 81.635 By MS/MS 6 0 1 1 5903100 0 5903100 0 9661 1096 10110 41186 34288 34288 1 0 2043500 0 MISAAQLLDELMGR ______________________________ ______________________________ - M I G R D 2 1 0 1 0 1 1 1 0 1 3 0 2 0 0 1 0 0 0 0 0 0 14 0 1546.7847 O95232 O95232 1 14 LUC7L3 Luc7-like protein 3 yes yes 2 3.1228E-34 206.97 By MS/MS By MS/MS 3.07 1.06 2 2 4 7 3 12 42370000 0 4679200 37690000 9662 312 10111;10112;10113 41187;41188;41189;41190;41191;41192;41193;41194;41195;41196;41197;41198;41199;41200;41201 34289;34290;34291;34292;34293;34294;34295;34296;34297;34298;34299;34300 34297 115;116 12 0 1552900 6781500 MISAEAPVLFAK LARIKKIMKLDEDVKMISAEAPVLFAKAAQ DVKMISAEAPVLFAKAAQIFITELTLRAWI K M I A K A 3 0 0 0 0 0 1 0 0 1 1 1 1 1 1 1 0 0 0 1 0 0 12 0 1275.6897 Q13952 Q13952 60 71 NFYC Nuclear transcription factor Y subunit gamma yes yes 2 0.021655 83.647 By MS/MS By MS/MS 6.5 1.5 2 2 2 2 35252000 0 5018500 30234000 9663 1278 10114 41202;41203;41204;41205 34301;34302;34303 34303 3 0 1450200 4449600 MISEVTGGVSDTISYR MEKLGVPKTHLEMKKMISEVTGGVSDTISY ISEVTGGVSDTISYRDFVNMMLGKRSAVLK K M I Y R D 0 1 0 1 0 0 1 2 0 2 0 0 1 0 0 3 2 0 1 2 0 0 16 0 1713.8244 Q9BQI0 Q9BQI0 91 106 AIF1L Allograft inflammatory factor 1-like yes yes 2 5.3825E-05 144.57 By MS/MS 8 0 1 1 4894600 0 4894600 0 9664 1886 10115 41206 34304 34304 1 0 2226900 0 MITAAYVPLPTYHNLFPDSMTATQLLVPSR IAAVNALHGRWFAGKMITAAYVPLPTYHNL FPDSMTATQLLVPSRR______________ K M I S R R 3 1 1 1 0 1 0 0 1 1 4 0 2 1 4 2 4 0 2 2 0 0 30 0 3346.7094 Q14498 Q14498 500 529 RBM39 RNA-binding protein 39 yes yes 4 1.0727E-12 76.294 By MS/MS 3 0 1 1 4922800 0 0 4922800 9665 1302 10116 41207 34305 34305 1 0 0 954790 MITVNPDGKIMVR ______________________________ ______________________________ - M I V R R 0 1 1 1 0 0 0 1 0 2 0 1 2 0 1 0 1 0 0 2 0 0 13 1 1472.7843 Q3V5L5 Q3V5L5 1 13 MGAT5B Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B yes yes 2 0.03807 46.158 By MS/MS 1.5 0.5 1 1 2 4126300 0 4126300 0 9666 1412 10117 41208;41209 34306 34306 629;630 0 0 1890900 0 MIVDPVEPHGEMK LSKKLIYFQLHRALKMIVDPVEPHGEMKFQ LKMIVDPVEPHGEMKFQWDLNAWTKSAEAF K M I M K F 0 0 0 1 0 0 2 1 1 1 0 1 2 0 2 0 0 0 0 2 0 0 13 0 1480.7054 Q13263 Q13263 378 390 TRIM28 Transcription intermediary factor 1-beta yes yes 2;3 0.0038947 93.821 By MS/MS By MS/MS 3.17 1.86 2 4 2 1 1 1 1 5 7 172720000 0 32516000 140200000 9667 1235 10118;10119 41210;41211;41212;41213;41214;41215;41216;41217;41218;41219;41220;41221 34307;34308;34309;34310;34311;34312;34313;34314 34311 8 0 14318000 28002000 MKDQGPDKENSGAIEASVK FSCPYKTTFEIEISRMKDQGPDKENSGAIE GPDKENSGAIEASVKLTELLDLYREDRGAK R M K V K L 2 0 1 2 0 1 2 2 0 1 0 3 1 0 1 2 0 0 0 1 0 0 19 2 2002.963 Q69YN4 Q69YN4 366 384 KIAA1429 Protein virilizer homolog yes yes 3 0.00018385 84.499 By MS/MS 1 0 1 1 5879600 0 0 5879600 9668 1468 10120 41222 34315 34315 1 0 0 1266900 MKDSYIEVLLPLGSEPELR HSFLAKSQDGLPPRRMKDSYIEVLLPLGSE YIEVLLPLGSEPELREKYLTVQNTVRFGRI R M K L R E 0 1 0 1 0 0 3 1 0 1 4 1 1 0 2 2 0 0 1 1 0 0 19 1 2188.145 Q9Y305 Q9Y305 83 101 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 3 1.9256E-06 104.84 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 9833900 0 3018900 6814900 9669 2256 10121 41223;41224;41225 34316;34317 34317 2 0 778190 1009600 MKDTDSEEEIR GTIDFPEFLTMMARKMKDTDSEEEIREAFR MARKMKDTDSEEEIREAFRVFDKDGNGYIS K M K I R E 0 1 0 2 0 0 3 0 0 1 0 1 1 0 0 1 1 0 0 0 0 0 11 1 1351.5926 P0DP25;P0DP24;P0DP23 P0DP25 77 87 yes no 2;3 0.001635 136.63 By matching By MS/MS 8 0.756 2 3 2 1 6 17075000 0 390570 16685000 9670 505 10122 41226;41227;41228;41229;41230;41231;41232 34318;34319;34320 34320 3 0 177690 2847700 MKDTDSEEEIREAFR GTIDFPEFLTMMARKMKDTDSEEEIREAFR MKDTDSEEEIREAFRVFDKDGNGYISAAEL K M K F R V 1 2 0 2 0 0 4 0 0 1 0 1 1 1 0 1 1 0 0 0 0 0 15 2 1854.8418 P0DP25;P0DP24;P0DP23 P0DP25 77 91 yes no 3 0.0001055 147.35 By MS/MS 8 0 1 1 6790700 0 0 6790700 9671 505 10123 41233 34321 34321 1 0 0 1041100 MKEEVPTALVEAHVR VASAAAKSALEEFSKMKEEVPTALVEAHVR MKEEVPTALVEAHVRKVEEAAKVTGKADPA K M K V R K 2 1 0 0 0 0 3 0 1 0 1 1 1 0 1 0 1 0 0 3 0 0 15 1 1707.8978 Q8TAQ2 Q8TAQ2 703 717 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 3 0.046475 42.818 By MS/MS 1.5 0.5 1 1 2 11234000 0 0 11234000 9672 1653 10124 41234;41235 34322 34322 1 0 0 2472200 MKEIAEAYLGK KSFYPEEVSSMVLTKMKEIAEAYLGKTVTN VLTKMKEIAEAYLGKTVTNAVVTVPAYFND K M K G K T 2 0 0 0 0 0 2 1 0 1 1 2 1 0 0 0 0 0 1 0 0 0 11 1 1251.6533 P11142 P11142 127 137 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 0.040883 100.55 By MS/MS By MS/MS 3 0 2 1 1 67961000 0 51299000 16662000 9673 517 10125;10126 41236;41237 34323;34324 34323 2 0 21869000 3231600 MKEIAEAYLGYPVTNAVITVPAYFNDSQR KAFYPEEISSMVLTKMKEIAEAYLGYPVTN NAVITVPAYFNDSQRQATKDAGVIAGLNVL K M K Q R Q 4 1 2 1 0 1 2 1 0 2 1 1 1 1 2 1 2 0 3 3 0 0 29 1 3259.6224 P0DMV9;P0DMV8 P0DMV9 127 155 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 3 1.1624E-11 87.772 By MS/MS 2.5 0.5 1 1 2 23852000 0 0 23852000 9674 501 10127 41238;41239 34325 34325 1 0 0 4713900 MKFNPFVTSDR ______________________________ ______________________________ - M K D R S 0 1 1 1 0 0 0 0 0 0 0 1 1 2 1 1 1 0 0 1 0 0 11 1 1340.6547 P61254;Q9UNX3 P61254 1 11 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2;3 0.0025314 123.63 By MS/MS By matching 7.12 0.331 7 1 4 4 65877000 0 35813000 30064000 9675 989 10128;10129;10130 41240;41241;41242;41243;41244;41245;41246;41247 34326;34327;34328;34329 34328 474 4 0 20564000 5148800 MKLDYILGLK LLRRLVRIGVLDEGKMKLDYILGLKIEDFL LDEGKMKLDYILGLKIEDFLERRLQTQVFK K M K L K I 0 0 0 1 0 0 0 1 0 1 3 2 1 0 0 0 0 0 1 0 0 0 10 1 1192.689 P46781 P46781 92 101 RPS9 40S ribosomal protein S9 yes yes 2;3 0.016807 91.584 By MS/MS By MS/MS 7 0.577 1 4 1 3 3 105350000 0 33503000 71849000 9676 831 10131;10132 41248;41249;41250;41251;41252;41253 34330;34331;34332 34330 409 3 0 18959000 12627000 MKPWQSEYGGVVFGGWAR STYEIRQDIEDSVSRMKPWQSEYGGVVFGG WQSEYGGVVFGGWARMAQPIVAFTVVEVAK R M K A R M 1 1 0 0 0 1 1 4 0 0 0 1 1 1 1 1 0 2 1 2 0 0 18 1 2053.9833 O60306 O60306 492 509 AQR Intron-binding protein aquarius yes yes 3 0.00031099 83.751 By MS/MS 2 0.816 1 1 1 3 9560600 0 0 9560600 9677 225 10133 41254;41255;41256 34333 34333 1 0 0 2095300 MKSEEQPMDLENR EEETPKQEEQKESEKMKSEEQPMDLENRST EKMKSEEQPMDLENRSTANVLEETTVKKEK K M K N R S 0 1 1 1 0 1 3 0 0 0 1 1 2 0 1 1 0 0 0 0 0 0 13 1 1605.7127 Q96T23 Q96T23 253 265 RSF1 Remodeling and spacing factor 1 yes yes 3 0.0036114 82.202 By MS/MS 1 0 1 1 8886700 0 0 8886700 9678 1837 10134 41257 34334 34334 1 0 0 1914800 MKTEAELAKEEQEHLR VRELGFEMKAQPSNRMKTEAELAKEEQEHL KTEAELAKEEQEHLRKLEAERLRRMLGKDE R M K L R K 2 1 0 0 0 1 5 0 1 0 2 2 1 0 0 0 1 0 0 0 0 0 16 2 1940.9626 P78316 P78316 272 287 NOP14 Nucleolar protein 14 yes yes 4 0.034078 44.998 By MS/MS 2 0 1 1 10555000 0 0 10555000 9679 1083 10135 41258 34335 34335 1 0 0 2385300 MLAEDELR NDRERVNEAREELMRMLAEDELRDAVLLVF AREELMRMLAEDELRDAVLLVFANKQDLPN R M L L R D 1 1 0 1 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 975.46953 P84077;P61204 P84077 110 117 ARF1;ARF3 ADP-ribosylation factor 1;ADP-ribosylation factor 3 yes no 2 0.011278 92.187 By matching By MS/MS 7.67 0.471 1 2 1 2 21017000 1441100 0 19576000 9680 984 10136 41259;41260;41261 34336;34337 34337 2 1237200 0 3160400 MLALALLDR EVVCRDACDGHEIGRMLALALLDRIVSVDK GHEIGRMLALALLDRIVSVDKQQQWLLYLS R M L D R I 2 1 0 1 0 0 0 0 0 0 4 0 1 0 0 0 0 0 0 0 0 0 9 0 1014.5896 Q92621 Q92621 1494 1502 NUP205 Nuclear pore complex protein Nup205 yes yes 2 5.1382E-07 153.78 By MS/MS 1.75 0.829 2 1 1 4 20843000 0 0 20843000 9681 1714 10137;10138 41262;41263;41264;41265 34338;34339 34339 2 0 0 4497600 MLAQSALSPYLSSPVSSYQR QNGFYPAPYNITPNRMLAQSALSPYLSSPV ALSPYLSSPVSSYQRVTQTSPLQVPNPSWM R M L Q R V 2 1 0 0 0 2 0 0 0 0 3 0 1 0 2 6 0 0 2 1 0 0 20 0 2184.0885 Q15434 Q15434 273 292 RBMS2 RNA-binding motif, single-stranded-interacting protein 2 yes yes 2;3 6.8595E-28 189.86 By MS/MS 5 0 2 2 7436100 0 7436100 0 9682 1367 10139 41266;41267 34340;34341 34340 2 0 1916800 0 MLDAEDIVGTARPDEK NTAFDVAEKYLDIPKMLDAEDIVGTARPDE LDAEDIVGTARPDEKAIMTYVSSFYHAFSG K M L E K A 2 1 0 3 0 0 2 1 0 1 1 1 1 0 1 0 1 0 0 1 0 0 16 1 1758.8458 P12814 P12814 221 236 ACTN1 Alpha-actinin-1 yes yes 3 0.0033241 67.415 By MS/MS 2 0 1 1 18309000 0 0 18309000 9683 540 10140 41268 34342 34342 1 0 0 4137400 MLDAEDIVNTARPDEK NNAFEVAEKYLDIPKMLDAEDIVNTARPDE LDAEDIVNTARPDEKAIMTYVSSFYHAFSG K M L E K A 2 1 1 3 0 0 2 0 0 1 1 1 1 0 1 0 1 0 0 1 0 0 16 1 1815.8673 O43707 O43707 240 255 ACTN4 Alpha-actinin-4 yes yes 2;3 1.4602E-58 229.95 By MS/MS By MS/MS 1.86 0.35 1 6 5 2 134520000 0 54140000 80375000 9684 210 10141;10142 41269;41270;41271;41272;41273;41274;41275 34343;34344;34345;34346;34347;34348 34348 88 6 0 24465000 18163000 MLDGLDPHPMLPNYK LPNYDAREIVNNVRRMLDGLDPHPMLPNYK MLDGLDPHPMLPNYKNFKGTIQELGQNQYA R M L Y K N 0 0 1 2 0 0 0 1 1 0 3 1 2 0 3 0 0 0 1 0 0 0 15 0 1739.8375 Q02880 Q02880 900 914 TOP2B DNA topoisomerase 2-beta yes yes 3 0.002518 73.36 By matching By MS/MS 1.33 0.471 2 1 1 2 27601000 0 3107700 24494000 9685 1150 10143 41276;41277;41278 34349;34350 34349 2 0 1519000 5367700 MLDHEYTTK KLSPKAEEVATFFAKMLDHEYTTKEIFRKN ATFFAKMLDHEYTTKEIFRKNFFKDWRKEM K M L T K E 0 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 2 0 1 0 0 0 9 0 1136.5172 P11387;Q969P6 P11387 263 271 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 9.2153E-05 143.45 By matching By MS/MS 2.33 0.471 2 1 1 2 27350000 0 3197600 24153000 9686 523 10144 41279;41280;41281 34351;34352 34352 2 0 1439900 4752200 MLDILAEYLK RERGNRVLIFSQMVRMLDILAEYLKYRQFP SQMVRMLDILAEYLKYRQFPFQRLDGSIKG R M L L K Y 1 0 0 1 0 0 1 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 10 0 1207.6522 O14646 O14646 816 825 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.03594 76.465 By MS/MS 1.5 0.5 1 1 2 2424800 0 2424800 0 9687 141 10145 41282;41283 34353 34353 1 0 1151700 0 MLDILAEYLTIK RERGNRVLIFSQMVRMLDILAEYLTIKHYP MVRMLDILAEYLTIKHYPFQRLDGSIKGEI R M L I K H 1 0 0 1 0 0 1 0 0 2 3 1 1 0 0 0 1 0 1 0 0 0 12 0 1421.784 O14647 O14647 819 830 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 2 0.0080249 97.456 By MS/MS 1 0 1 1 4132000 0 0 4132000 9688 142 10146 41284 34354 34354 1 0 0 890310 MLDLLEDFLEHEGYK KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK MLDLLEDFLEHEGYKYERIDGGITGNMRQE K M L Y K Y 0 0 0 2 0 0 3 1 1 0 4 1 1 1 0 0 0 0 1 0 0 0 15 0 1850.8761 Q14839 Q14839 1078 1092 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 5.6159E-05 120.53 By MS/MS 1.5 0.5 1 1 2 4517700 0 0 4517700 9689 1321 10147 41285;41286 34355 34355 1 0 0 1010800 MLDLLEDFLEHEGYKYER KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK LLEDFLEHEGYKYERIDGGITGNMRQEAID K M L E R I 0 1 0 2 0 0 4 1 1 0 4 1 1 1 0 0 0 0 2 0 0 0 18 1 2299.0831 Q14839 Q14839 1078 1095 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 4 2.275E-06 106.94 By MS/MS 2 0 1 1 1929400 0 0 1929400 9690 1321 10148 41287 34356 34356 1 0 0 436000 MLDMGFEPQIR GLDFCKYLVLDEADRMLDMGFEPQIRRIVE EADRMLDMGFEPQIRRIVEQDTMPPKGVRH R M L I R R 0 1 0 1 0 1 1 1 0 1 1 0 2 1 1 0 0 0 0 0 0 0 11 0 1335.6315 Q92841;P17844;O00571;O15523 O00571 352 362 DDX17;DDX5;DDX3X;DDX3Y Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5;ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y no no 2 1.2331E-10 174.02 By MS/MS By MS/MS By MS/MS 3.36 1.49 4 4 12 7 2 3 1 3 16 14 1012800000 35462000 354220000 623090000 9691 131;588;1725 10149;10150;10151 41288;41289;41290;41291;41292;41293;41294;41295;41296;41297;41298;41299;41300;41301;41302;41303;41304;41305;41306;41307;41308;41309;41310;41311;41312;41313;41314;41315;41316;41317;41318;41319;41320 34357;34358;34359;34360;34361;34362;34363;34364;34365;34366;34367;34368;34369;34370;34371;34372;34373;34374;34375;34376;34377;34378;34379;34380;34381;34382 34358 70;71 26 40915000 135300000 118500000 MLEENTNILK QRQQLGTAVELEMAKMLEENTNILKFGYQF LEMAKMLEENTNILKFGYQFTQQGPRTRAA K M L L K F 0 0 2 0 0 0 2 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 10 0 1203.6169 Q9NYL9 Q9NYL9 308 317 TMOD3 Tropomodulin-3 yes yes 2 0.015307 85.67 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 32765000 0 17215000 15550000 9692 2099 10152 41321;41322;41323 34383;34384 34384 2 0 4690000 2168900 MLEQLDMR NLKHIKHFILDECDKMLEQLDMRRDVQEIF ILDECDKMLEQLDMRRDVQEIFRMTPHEKQ K M L M R R 0 1 0 1 0 1 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 8 0 1034.4889 Q13838;O00148 Q13838 201 208 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2 7.9973E-06 154.35 By matching By MS/MS By MS/MS 5.57 1.4 2 2 1 1 1 1 1 5 97008000 2527100 3820800 90660000 9693 1271 10153 41324;41325;41326;41327;41328;41329;41330 34385;34386;34387 34386 3 1971600 984890 13331000 MLFKDDYPSSPPK GKKGTPWEGGLFKLRMLFKDDYPSSPPKCK LRMLFKDDYPSSPPKCKFEPPLFHPNVYPS R M L P K C 0 0 0 2 0 0 0 0 0 0 1 2 1 1 3 2 0 0 1 0 0 0 13 1 1523.733 P63279 P63279 62 74 UBE2I SUMO-conjugating enzyme UBC9 yes yes 2;3 0.0026356 78.342 By matching By MS/MS 8 0 3 1 2 12845000 0 1602900 11242000 9694 1071 10154 41331;41332;41333 34388;34389 34389 2 0 729260 1723600 MLFSAVEWAR NNIMGIENICELAARMLFSAVEWARNIPFF ELAARMLFSAVEWARNIPFFPDLQITDQVA R M L A R N 2 1 0 0 0 0 1 0 0 0 1 0 1 1 0 1 0 1 0 1 0 0 10 0 1208.6012 P24468 P24468 219 228 NR2F2 COUP transcription factor 2 yes yes 2 0.00055623 134.48 By MS/MS 4.5 0.5 1 1 2 2945200 0 0 2945200 9695 648 10155 41334;41335 34390 34390 1 0 0 431590 MLFYSFFK ______________________________ ______________________________ - M L F K S 0 0 0 0 0 0 0 0 0 0 1 1 1 3 0 1 0 0 1 0 0 0 8 0 1081.5307 Q9Y333 Q9Y333 1 8 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2 0.026209 79.469 By MS/MS 9 0 1 1 9032600 0 0 9032600 9696 2258 10156 41336 34391 34391 1 0 0 2885400 MLGALYMR IIVEFIKNEDFKYVRMLGALYMRLTGTAID EDFKYVRMLGALYMRLTGTAIDCYKYLEPL R M L M R L 1 1 0 0 0 0 0 1 0 0 2 0 2 0 0 0 0 0 1 0 0 0 8 0 953.48268 Q8NAV1 Q8NAV1 101 108 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2 0.00011112 146.21 By matching By MS/MS By MS/MS 5 0.707 1 2 1 1 2 1 29815000 2513900 14916000 12385000 9697 1622 10157 41337;41338;41339;41340 34392;34393;34394 34394 3 1961300 4404300 1727500 MLGPEGGEGFVVK ______________________________ ______________________________ M M L V K L 0 0 0 0 0 0 2 4 0 0 1 1 1 1 1 0 0 0 0 2 0 0 13 0 1318.6591 P52597 P52597 2 14 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 1;2 5.7758E-05 128.44 By MS/MS By MS/MS By MS/MS 5.95 2.29 1 1 2 7 1 4 1 3 2 9 9 241490000 10170000 83721000 147600000 9698 910 10158;10159 41341;41342;41343;41344;41345;41346;41347;41348;41349;41350;41351;41352;41353;41354;41355;41356;41357;41358;41359;41360 34395;34396;34397;34398;34399;34400;34401;34402;34403;34404;34405;34406;34407;34408;34409;34410;34411;34412 34399 449 18 8147700 46551000 25259000 MLGTEGGEGFVVK ______________________________ ______________________________ M M L V K V 0 0 0 0 0 0 2 4 0 0 1 1 1 1 0 0 1 0 0 2 0 0 13 0 1322.654 P31943 P31943 2 14 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 1;2 2.1971E-35 215.87 By MS/MS By MS/MS 5.13 2.42 1 1 1 3 4 2 1 2 7 8 171080000 0 61926000 109150000 9699 722 10160;10161 41361;41362;41363;41364;41365;41366;41367;41368;41369;41370;41371;41372;41373;41374;41375 34413;34414;34415;34416;34417;34418;34419;34420;34421;34422 34417 325 10 0 25798000 20980000 MLINQHTLLFGGDTNPVHPK QYFLDRFYTNRISFRMLINQHTLLFGGDTN HTLLFGGDTNPVHPKHIGSIDPTCNVADVV R M L P K H 0 0 2 1 0 1 0 2 2 1 3 1 1 1 2 0 2 0 0 1 0 0 20 0 2231.1521 Q15120 Q15120 163 182 PDK3 [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 3, mitochondrial yes yes 4 0.0038705 52.295 By MS/MS 5 0 1 1 7300000 0 7300000 0 9700 1346 10162 41376 34423 34423 1 0 1881700 0 MLIQENQELGR TPDSQTGKKLMAKCRMLIQENQELGRQLSQ AKCRMLIQENQELGRQLSQGRIAQLEAELA R M L G R Q 0 1 1 0 0 2 2 1 0 1 2 0 1 0 0 0 0 0 0 0 0 0 11 0 1329.6711 Q15007 Q15007 163 173 WTAP Pre-mRNA-splicing regulator WTAP yes yes 2 0.00032837 130.66 By MS/MS 4 0 1 1 4872400 0 4872400 0 9701 1328 10163 41377 34424 34424 1 0 1617000 0 MLIYDPAK HVKNLDENGLDLLSKMLIYDPAKRISGKMA GLDLLSKMLIYDPAKRISGKMALNHPYFND K M L A K R 1 0 0 1 0 0 0 0 0 1 1 1 1 0 1 0 0 0 1 0 0 0 8 0 949.49429 P06493 P06493 267 274 CDK1 Cyclin-dependent kinase 1 yes yes 2 0.0697 68.081 By matching By MS/MS 6 0 2 1 1 20786000 0 6299000 14487000 9702 443 10164 41378;41379 34425 34425 1 0 2180500 2167500 MLLADQGQSWK TVVYFPVRGRCAALRMLLADQGQSWKEEVV AALRMLLADQGQSWKEEVVTVETWQEGSLK R M L W K E 1 0 0 1 0 2 0 1 0 0 2 1 1 0 0 1 0 1 0 0 0 0 11 0 1275.6282 P09211 P09211 20 30 GSTP1 Glutathione S-transferase P yes yes 2 3.5975E-05 147.24 By matching By MS/MS 7 0 2 1 1 39001000 3623600 0 35378000 9703 482 10165 41380;41381 34426 34426 1 7809700 0 6277500 MLLDPMGGIVMTNDGNAILR ADIIRTCLGPKSMMKMLLDPMGGIVMTNDG MGGIVMTNDGNAILREIQVQHPAAKSMIEI K M L L R E 1 1 2 2 0 0 0 3 0 2 3 0 3 0 1 0 1 0 0 1 0 0 20 0 2130.0636 P49368 P49368 49 68 CCT3 T-complex protein 1 subunit gamma yes yes 2;3 1.0565E-27 186.56 By MS/MS By MS/MS 4 0 2 1 1 15158000 6120400 9037500 0 9704 854 10166;10167 41382;41383 34427;34428 34428 415;416 2 4775000 2999200 0 MLLDSVLTTHER TKTIEVLQLQDQGSKMLLDSVLTTHERVVQ GSKMLLDSVLTTHERVVQISGLSATFAEIF K M L E R V 0 1 0 1 0 0 1 0 1 0 3 0 1 0 0 1 2 0 0 1 0 0 12 0 1413.7286 Q96GC5 Q96GC5 144 155 MRPL48 39S ribosomal protein L48, mitochondrial yes yes 3 0.00014409 120.55 By matching By MS/MS 8 0 2 1 1 10189000 0 603400 9585600 9705 1789 10168 41384;41385 34429 34429 1 0 274530 1469600 MLLEEIK DDDDDNDPENRIAKKMLLEEIKANLSSDED PENRIAKKMLLEEIKANLSSDEDGSSDDEP K M L I K A 0 0 0 0 0 0 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 7 0 874.48339 P46100 P46100 1275 1281 ATRX Transcriptional regulator ATRX yes yes 2 0.044859 78.616 By MS/MS 1 0 1 1 4131700 0 0 4131700 9706 825 10169 41386 34430 34430 1 0 0 890240 MLLGHMPTVELLK QKNKRMILIYLLPVKMLLGHMPTVELLKKY VKMLLGHMPTVELLKKYHLMQFAEVTRAVS K M L L K K 0 0 0 0 0 0 1 1 1 0 4 1 2 0 1 0 1 0 0 1 0 0 13 0 1480.8146 Q5JVF3 Q5JVF3 260 272 PCID2 PCI domain-containing protein 2 yes yes 3 0.071159 36.107 By MS/MS 5 0 1 1 8808600 0 0 8808600 9707 1441 10170 41387 34431 34431 1 0 0 1228600 MLLPNILLTGTPGVGK ______________________________ LLPNILLTGTPGVGKTTLGKELASKSGLKY - M L G K T 0 0 1 0 0 0 0 3 0 1 4 1 1 0 2 0 2 0 0 1 0 0 16 0 1622.9429 Q9Y3D8 Q9Y3D8 1 16 AK6 Adenylate kinase isoenzyme 6 yes yes 2 5.3702E-05 110.66 By matching By MS/MS 7 0 2 1 1 3558700 0 891040 2667600 9708 2271 10171 41388;41389 34432 34432 1 0 511640 473350 MLLQSSEGR TGSGKTICAEFAILRMLLQSSEGRCVYITP EFAILRMLLQSSEGRCVYITPMEALAEQVY R M L G R C 0 1 0 0 0 1 1 1 0 0 2 0 1 0 0 2 0 0 0 0 0 0 9 0 1019.507 O75643 O75643 1367 1375 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 2.2969E-12 174.27 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 57522000 2384500 29837000 25300000 9709 277 10172 41390;41391;41392;41393 34433;34434 34434 2 2384500 14584000 5463700 MLLSLPEK FLEMLQRDFGYRVYKMLLSLPEKVVSPPEP FGYRVYKMLLSLPEKVVSPPEPEKEEAAKE K M L E K V 0 0 0 0 0 0 1 0 0 0 3 1 1 0 1 1 0 0 0 0 0 0 8 0 929.52559 Q8N163 Q8N163 559 566 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 0.048786 73.26 By MS/MS 2 0 1 1 5106900 0 0 5106900 9710 1598 10173 41394 34435 34435 1 0 0 1154100 MLLSPGGVSQPLTASLAR SVSKDQPGRRSQMLRMLLSPGGVSQPLTAS SPGGVSQPLTASLARQRIVEEERERAVQAY R M L A R Q 2 1 0 0 0 1 0 2 0 0 4 0 1 0 2 3 1 0 0 1 0 0 18 0 1796.9819 Q6PK04 Q6PK04 230 247 CCDC137 Coiled-coil domain-containing protein 137 yes yes 2 1.675E-08 124.42 By MS/MS By MS/MS 6 0.707 1 2 1 3 1 28488000 0 13375000 15113000 9711 1496 10174 41395;41396;41397;41398 34436;34437;34438 34438 3 0 5160200 2261000 MLLTAVQLLYSPESSVR KKGLKFRYQDHTFLKMLLTAVQLLYSPESS LTAVQLLYSPESSVRTKLIQLPVVYVMLMQ K M L V R T 1 1 0 0 0 1 1 0 0 0 4 0 1 0 1 3 1 0 1 2 0 0 17 0 1906.0234 O60287 O60287 1450 1466 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2;3 0.00011323 104.24 By MS/MS 1 0 2 2 4742700 0 0 4742700 9712 224 10175 41399;41400 34439;34440 34440 1 0 0 1021900 MLPLSLLK ______________________________ ______________________________ - M L L K T 0 0 0 0 0 0 0 0 0 0 4 1 1 0 1 1 0 0 0 0 0 0 8 0 913.56706 Q9Y4Z0 Q9Y4Z0 1 8 LSM4 U6 snRNA-associated Sm-like protein LSm4 yes yes 1 0.0014914 94.262 By MS/MS By matching 8 0 2 1 1 2933200 0 855480 2077700 9713 2291 10176 41401;41402 34441 34441 1 0 389210 318530 MLPPPPMWR PWPRPPPRRFSPPRRMLPPPPMWRRSPPRM FSPPRRMLPPPPMWRRSPPRMRRRSRSPRR R M L W R R 0 1 0 0 0 0 0 0 0 0 1 0 2 0 4 0 0 1 0 0 0 0 9 0 1123.5671 Q15287 Q15287 256 264 RNPS1 RNA-binding protein with serine-rich domain 1 yes yes 2 0.001563 107.66 By MS/MS By MS/MS 4.82 1.7 1 1 2 3 2 2 5 6 163120000 0 50754000 112370000 9714 1353 10177;10178 41403;41404;41405;41406;41407;41408;41409;41410;41411;41412;41413 34442;34443;34444;34445;34446;34447;34448;34449 34447 621 8 0 15669000 17158000 MLPTIIADNAGYDSADLVAQLR GKEAVAMESYAKALRMLPTIIADNAGYDSA DNAGYDSADLVAQLRAAHSEGNTTAGLDMR R M L L R A 4 1 1 3 0 1 0 1 0 2 3 0 1 0 1 1 1 0 1 1 0 0 22 0 2346.1889 P78371 P78371 445 466 CCT2 T-complex protein 1 subunit beta yes yes 3 6.0423E-15 118.54 By MS/MS By MS/MS 4 0 2 1 1 14891000 0 0 14891000 9715 1086 10179 41414;41415 34450;34451 34451 2 0 0 2432200 MLQADPNKVSAR YAWAEDKEHCEEYGRMLQADPNKVSARAKK YGRMLQADPNKVSARAKKRGLPQLGTLGAG R M L A R A 2 1 1 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 12 1 1328.6871 Q9Y3I0 Q9Y3I0 199 210 RTCB tRNA-splicing ligase RtcB homolog yes yes 3 0.040405 57.802 By MS/MS 4 0 1 1 0 0 0 0 9716 2276 10180 41416 34452 34452 1 0 0 0 MLQHIDYR ______________________________ TVGKSSKMLQHIDYRMRCILQDGRIFIGTF K M L Y R M 0 1 0 1 0 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 0 8 0 1074.528 P14678;P63162 P14678 9 16 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 0.0009928 121.99 By matching By MS/MS By MS/MS 6.4 0.49 3 2 1 2 2 80451000 2339200 26936000 51176000 9717 563 10181;10182 41417;41418;41419;41420;41421 34453;34454;34455 34454 247 3 3114700 13668000 8890600 MLQNVTPHNK ______________________________ ______________________________ - M L N K L 0 0 2 0 0 1 0 0 1 0 1 1 1 0 1 0 1 0 0 1 0 0 10 0 1180.6023 P25440 P25440 1 10 BRD2 Bromodomain-containing protein 2 yes yes 2 0.063343 60.019 By MS/MS 1.5 0.5 1 1 2 24134000 0 0 24134000 9718 658 10183 41422;41423 34456 34456 1 0 0 5366800 MLQPCGPPADKPEEN ENESKARVRFNLMEKMLQPCGPPADKPEEN MLQPCGPPADKPEEN_______________ K M L E N - 1 0 1 1 1 1 2 1 0 0 1 1 1 0 4 0 0 0 0 0 0 0 15 1 1681.744 Q9BWJ5 Q9BWJ5 72 86 SF3B5 Splicing factor 3B subunit 5 yes yes 2 0.0079406 97.734 By MS/MS 9.5 0.5 1 1 2 10535000 0 0 10535000 9719 1925 10184 41424;41425 34457 34457 1 0 0 10914000 MLQPSSSPLWGK LQKLLFGKVAKDSSRMLQPSSSPLWGKLRV SSRMLQPSSSPLWGKLRVDIKAYLGSAIQL R M L G K L 0 0 0 0 0 1 0 1 0 0 2 1 1 0 2 3 0 1 0 0 0 0 12 0 1329.6751 Q9Y3T9 Q9Y3T9 234 245 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.017382 82.749 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 48865000 0 7504500 41360000 9720 2277 10185 41426;41427;41428;41429;41430 34458;34459;34460 34458 3 0 3199200 7985200 MLQQQEQLR EEIENLKKQHDLLKRMLQQQEQLRALQGRQ HDLLKRMLQQQEQLRALQGRQAALLALQHK R M L L R A 0 1 0 0 0 4 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9 0 1172.5972 Q15154 Q15154 286 294 PCM1 Pericentriolar material 1 protein yes yes 2 1.6512E-11 172.14 By MS/MS By MS/MS 1 0 2 1 1 16495000 0 8210200 8284900 9721 1349 10186 41431;41432 34461;34462 34462 2 0 4013000 1785100 MLSALLTGVNR CFFRTCVKKKDVESKMLSALLTGVNRAYPY VESKMLSALLTGVNRAYPYSQTGDDKVREQ K M L N R A 1 1 1 0 0 0 0 1 0 0 3 0 1 0 0 1 1 0 0 1 0 0 11 0 1173.654 Q03701 Q03701 482 492 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 5.6417E-19 185.6 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 1 2 41581000 2415600 8384300 30781000 9722 1157 10187 41433;41434;41435;41436 34463;34464;34465 34465 3 2910500 3775600 6900500 MLSELPALGISGIRPTYILR RGLHSQNFTQALLERMLSELPALGISGIRP PALGISGIRPTYILRWTVELIVANTKTGRN R M L L R W 1 2 0 0 0 0 1 2 0 3 4 0 1 0 2 2 1 0 1 0 0 0 20 1 2199.2449 Q9Y4W2 Q9Y4W2 402 421 LAS1L Ribosomal biogenesis protein LAS1L yes yes 3 6.4845E-14 124.26 By MS/MS By MS/MS 2.75 0.433 1 3 2 2 39353000 0 8389900 30963000 9723 2289 10188;10189 41437;41438;41439;41440 34466;34467;34468 34467 739 3 0 3644500 6005300 MLSGGFGYSPFLSITDGNMPGTRPASR FLMDPFAIHRQHMSRMLSGGFGYSPFLSIT SITDGNMPGTRPASRRMQQAGAVSPFGMLG R M L S R R 1 2 1 1 0 0 0 5 0 1 2 0 2 2 3 4 2 0 1 0 0 0 27 1 2815.3422 Q15773 Q15773 30 56 MLF2 Myeloid leukemia factor 2 yes yes 3 0.017935 29.855 By MS/MS 6 0 1 1 7814700 0 7814700 0 9724 1381 10190 41441 34469 34469 1 0 2705200 0 MLSGIGAEGEAR VYSIQKKRVAFNVSKMLSGIGAEGEARSYR VSKMLSGIGAEGEARSYRMFHDDSMKSFFR K M L A R S 2 1 0 0 0 0 2 3 0 1 1 0 1 0 0 1 0 0 0 0 0 0 12 0 1189.5761 Q13112 Q13112 212 223 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 0.0008113 120.27 By MS/MS 3 0 1 1 45927000 0 0 45927000 9725 1221 10191 41442 34470 34470 1 0 0 8907700 MLTAQDMSYDEAR FLQDCQELSLWINEKMLTAQDMSYDEARNL EKMLTAQDMSYDEARNLHSKWLKHQAFMAE K M L A R N 2 1 0 2 0 1 1 0 0 0 1 0 2 0 0 1 1 0 1 0 0 0 13 0 1529.649 Q01082 Q01082 1295 1307 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 2.913E-07 167.12 By MS/MS By MS/MS 1 0 4 2 2 79343000 0 31043000 48299000 9726 1128 10192;10193 41443;41444;41445;41446 34471;34472;34473;34474 34473 541;542 3 0 15173000 10407000 MLTAQDVSYDEAR FLQDCHELKLWIDEKMLTAQDVSYDEARNL EKMLTAQDVSYDEARNLHTKWQKHQAFMAE K M L A R N 2 1 0 2 0 1 1 0 0 0 1 0 1 0 0 1 1 0 1 1 0 0 13 0 1497.677 O15020 O15020 1298 1310 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 1.9175E-11 180.07 By MS/MS 1 0 1 1 4936600 0 4936600 0 9727 160 10194 41447 34475 34475 1 0 2412900 0 MLTELEK ______________________________ ______________________________ - M L E K A 0 0 0 0 0 0 2 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 7 0 862.447 P05109 P05109 1 7 S100A8 Protein S100-A8;Protein S100-A8, N-terminally processed yes yes 2 0.042971 80.462 By MS/MS By matching 9.25 0.829 1 1 2 3 1 29796000 22348000 0 7447700 9728 424 10195 41448;41449;41450;41451 34476 34476 1 17217000 0 16289000 MLVLDEADEMLNK FDMIRRRSLRTRAIKMLVLDEADEMLNKGF IKMLVLDEADEMLNKGFKEQIYDVYRYLPP K M L N K G 1 0 1 2 0 0 2 0 0 0 3 1 2 0 0 0 0 0 0 1 0 0 13 0 1519.7262 P38919 P38919 183 195 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.00026878 145.89 By MS/MS By MS/MS By MS/MS 4.5 1.69 1 1 1 5 1 1 1 1 8 207670000 6712500 26126000 174830000 9729 775 10196;10197 41452;41453;41454;41455;41456;41457;41458;41459;41460;41461 34477;34478;34479;34480;34481;34482;34483;34484 34481 384;385 8 5377600 6734500 25878000 MLVTFDEELRPLPVSVR SHYVLYGLVAAMQPRMLVTFDEELRPLPVS VTFDEELRPLPVSVRVGQAVDVVGQAGKPK R M L V R V 0 2 0 1 0 0 2 0 0 0 3 0 1 1 2 1 1 0 0 3 0 0 17 1 2000.0765 Q13200 Q13200 829 845 PSMD2 26S proteasome non-ATPase regulatory subunit 2 yes yes 3 1.4203E-05 100.43 By MS/MS 2 0 1 1 1985900 0 0 1985900 9730 1229 10198 41462 34485 34485 1 0 0 448770 MLVVGGIDR DMNLYMRIAPELYHKMLVVGGIDRVYEIGR PELYHKMLVVGGIDRVYEIGRQFRNEGIDL K M L D R V 0 1 0 1 0 0 0 2 0 1 1 0 1 0 0 0 0 0 0 2 0 0 9 0 958.52699 Q15046 Q15046 306 314 KARS Lysine--tRNA ligase yes yes 2 0.00046492 119.17 By MS/MS 3 0 1 1 5789300 0 0 5789300 9731 1336 10199 41463 34486 34486 1 0 0 1122800 MMAIAPNVTVMVGELVGAR ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL APNVTVMVGELVGARLIAHAGSLLNLAKHA R M M A R L 3 1 1 0 0 0 1 2 0 1 1 0 3 0 1 0 1 0 0 4 0 0 19 0 1958.0151 Q9Y2X3 Q9Y2X3 279 297 NOP58 Nucleolar protein 58 yes yes 2;3 2.1198E-12 166.62 By MS/MS By MS/MS 3.36 1.02 2 1 8 9 2 9 13 178640000 0 12296000 166340000 9732 2254 10200;10201 41464;41465;41466;41467;41468;41469;41470;41471;41472;41473;41474;41475;41476;41477;41478;41479;41480;41481;41482;41483;41484;41485 34487;34488;34489;34490;34491;34492;34493;34494;34495;34496;34497;34498;34499;34500;34501;34502 34495 725;726 16 0 4124000 29206000 MMASGLTER KLARQAQSKEKTLQKMMASGLTERVVSDKT EKTLQKMMASGLTERVVSDKTLSFYFPPCG K M M E R V 1 1 0 0 0 0 1 1 0 0 1 0 2 0 0 1 1 0 0 0 0 0 9 0 994.45759 Q9UG63 Q9UG63 366 374 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.021571 81.191 By MS/MS 3 0 1 1 7854800 0 0 7854800 9733 2142 10202 41486 34503 34503 1 0 0 1523500 MMDIPEIR FLVFDWNWRDQKLRRMMDIPEIRKEVFELL RDQKLRRMMDIPEIRKEVFELLEMGVLSLC R M M I R K 0 1 0 1 0 0 1 0 0 2 0 0 2 0 1 0 0 0 0 0 0 0 8 0 1003.4831 Q9BQ75 Q9BQ75 247 254 CMSS1 Protein CMSS1 yes yes 2 3.7552E-05 151.29 By MS/MS 6 0 1 1 10090000 0 0 10090000 9734 1881 10203 41487 34504 34504 1 0 0 1509600 MMDYLQGSGETPQTDVR VDISSNTAGKTLFGKMMDYLQGSGETPQTD DYLQGSGETPQTDVRWMSETGIIDVFLLLG K M M V R W 0 1 0 2 0 2 1 2 0 0 1 0 2 0 1 1 2 0 1 1 0 0 17 0 1926.8452 Q14697 Q14697 338 354 GANAB Neutral alpha-glucosidase AB yes yes 2 4.8079E-09 166.45 By MS/MS 2 0 1 1 11076000 0 0 11076000 9735 1317 10204 41488 34505 34505 1 0 0 2502900 MMEIMTR TSYAQHQQVRQIRKKMMEIMTREVQTNDLK QVRQIRKKMMEIMTREVQTNDLKEVVNKLI K M M T R E 0 1 0 0 0 0 1 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 7 0 910.40747 P61247 P61247 168 174 RPS3A 40S ribosomal protein S3a yes yes 2 0.0028263 138.85 By MS/MS By MS/MS By MS/MS 6 0 5 1 2 2 237330000 7632100 81557000 148150000 9736 988 10205;10206 41489;41490;41491;41492;41493 34506;34507;34508;34509 34507 473 3 10162000 28232000 22164000 MMENGIKPVYVFDGKPPQLK ETTSHLMGMFYRTIRMMENGIKPVYVFDGK IKPVYVFDGKPPQLKSGELAKRSERRAEAE R M M L K S 0 0 1 1 0 1 1 2 0 1 1 3 2 1 3 0 0 0 1 2 0 0 20 2 2290.1854 P39748 P39748 74 93 FEN1 Flap endonuclease 1 yes yes 3 0.0023072 60.602 By MS/MS 5 0 1 1 4643700 0 4643700 0 9737 780 10207 41494 34510 34510 1 0 1197000 0 MMGGAGPGSSLEAR GPPNPPGPSPKALAKMMGGAGPGSSLEARS KMMGGAGPGSSLEARSPSDLHISPLAKKLP K M M A R S 2 1 0 0 0 0 1 4 0 0 1 0 2 0 1 2 0 0 0 0 0 0 14 0 1319.5962 O95785 O95785 1113 1126 WIZ Protein Wiz yes yes 2 0.00088536 111.33 By MS/MS By MS/MS 2 0 2 1 1 7880400 0 2719500 5160900 9738 340 10208 41495;41496 34511;34512 34512 2 0 1224600 1166300 MMITSQDVLHSWAVPTLGLK DVDNRVVLPIEAPIRMMITSQDVLHSWAVP QDVLHSWAVPTLGLKTDAIPGRLNQTTFTA R M M L K T 1 0 0 1 0 1 0 1 1 1 3 1 2 0 1 2 2 1 0 2 0 0 20 0 2226.1541 P00403 P00403 152 171 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 3 0.0018165 57.496 By matching By MS/MS 7.67 0.471 1 2 1 2 15196000 0 1004800 14192000 9739 359 10209 41497;41498;41499 34513;34514 34514 2 0 457140 2332400 MMLDDIVSR SVSLTGAPESVQKAKMMLDDIVSRGRGGPP SVQKAKMMLDDIVSRGRGGPPGQFHDNANG K M M S R G 0 1 0 2 0 0 0 0 0 1 1 0 2 0 0 1 0 0 0 1 0 0 9 0 1078.5151 Q92945 Q92945 206 214 KHSRP Far upstream element-binding protein 2 yes yes 2 0.00059857 127.56 By matching By MS/MS 1.5 0.5 1 1 1 1 5840100 0 609490 5230600 9740 1733 10210 41500;41501 34515 34515 1 0 297910 1182000 MMLGTEGGEGFVVK ______________________________ ______________________________ - M M V K V 0 0 0 0 0 0 2 4 0 0 1 1 2 1 0 0 1 0 0 2 0 0 14 0 1453.6945 P31943 P31943 1 14 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2 1.511E-17 189.72 By MS/MS By MS/MS By MS/MS 5.09 2.1 1 1 2 5 7 2 3 2 2 13 8 235000000 13069000 123410000 98516000 9741 722 10211;10212;10213 41502;41503;41504;41505;41506;41507;41508;41509;41510;41511;41512;41513;41514;41515;41516;41517;41518;41519;41520;41521;41522;41523;41524 34516;34517;34518;34519;34520;34521;34522;34523;34524;34525;34526;34527;34528;34529;34530;34531;34532;34533;34534;34535;34536 34521 325;326 21 10232000 50441000 17677000 MMLSQIASK GLAGVSLVPTAASKKMMLSQIASKQAENGE TAASKKMMLSQIASKQAENGERAGSPDVLR K M M S K Q 1 0 0 0 0 1 0 0 0 1 1 1 2 0 0 2 0 0 0 0 0 0 9 0 1007.5144 Q8NDX6 Q8NDX6 26 34 ZNF740 Zinc finger protein 740 yes yes 2 0.0083398 91.069 By MS/MS 7 0 1 1 8383700 0 0 8383700 9742 1637 10214 41525 34537 34537 1 0 0 1487600 MMLSTEGR ______________________________ ______________________________ - M M G R E 0 1 0 0 0 0 1 1 0 0 1 0 2 0 0 1 1 0 0 0 0 0 8 0 923.42047 P55795 P55795 1 8 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2 0.0023552 100.19 By MS/MS 5 0 1 1 4631100 0 4631100 0 9743 944 10215 41526 34538 34538 1 0 1193800 0 MMLTHLVVRPGLGSK RASVEERITQVAKKKMMLTHLVVRPGLGSK MMLTHLVVRPGLGSKTGSMSKQELDDILKF K M M S K T 0 1 0 0 0 0 0 2 1 0 3 1 2 0 1 1 1 0 0 2 0 0 15 1 1637.9109 Q14839;Q12873;Q8TDI0 Q14839 1192 1206 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2;3;4 1.1212E-10 178.95 By MS/MS 1.4 0.49 3 2 5 94513000 0 0 94513000 9744 1321;1662;1205 10216 41527;41528;41529;41530;41531 34539;34540;34541;34542 34540 4 0 0 20460000 MMQPFNKPSGTFIK STNVTVAAARGIKRKMMQPFNKPSGTFIKK KMMQPFNKPSGTFIKKPKLAKPMEKISLSK K M M I K K 0 0 1 0 0 1 0 1 0 1 0 2 2 2 2 1 1 0 0 0 0 0 14 1 1624.8106 Q5BKZ1 Q5BKZ1 241 254 ZNF326 DBIRD complex subunit ZNF326 yes yes 3 0.019599 57.267 By MS/MS 3 0 1 1 10051000 0 10051000 0 9745 1434 10217 41532 34543 34543 1 0 4284700 0 MNALFEGR MCPATQKLIEESQRKMNALFEGRRIEFAEQ IEESQRKMNALFEGRRIEFAEQINKMEARP K M N G R R 1 1 1 0 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 8 0 936.44874 Q9H307 Q9H307 263 270 PNN Pinin yes yes 2 0.021422 83.206 By MS/MS 2 0.816 1 1 1 3 15331000 0 0 15331000 9746 1978 10218 41533;41534;41535 34544;34545 34544 2 0 0 3345100 MNDILNHK KKCFPESYTTEATRRMNDILNHKMREFCIR TTEATRRMNDILNHKMREFCIRLRNLVHSG R M N H K M 0 0 2 1 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 8 0 983.48585 Q13867 Q13867 177 184 BLMH Bleomycin hydrolase yes yes 2 0.024096 81.119 By MS/MS 1 0 1 1 3104900 3104900 0 0 9747 1272 10219 41536 34546 34546 1 3104900 0 0 MNDTVTIR ______________________________ ______________________________ - M N I R T 0 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 1 0 0 8 0 948.46987 P62847 P62847 1 8 RPS24 40S ribosomal protein S24 yes yes 2 0.00086458 111.01 By MS/MS By MS/MS 7.25 1.2 1 1 2 3 1 5 3 66291000 0 52541000 13749000 9748 1038 10220;10221 41537;41538;41539;41540;41541;41542;41543;41544 34547;34548;34549 34548 498 3 0 25738000 2504400 MNEAFGDTK DVQSIIGLQRFFETRMNEAFGDTKFSAVLV RFFETRMNEAFGDTKFSAVLVEPPPMSLPG R M N T K F 1 0 1 1 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 0 0 9 0 1011.4331 Q13263 Q13263 796 804 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.0088613 90.135 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 21761000 0 10848000 10913000 9749 1235 10222 41545;41546 34550;34551 34550 2 0 4885200 2116600 MNEVISLWK LIDVNHYAKDEVAARMNEVISLWKKLLEAT DEVAARMNEVISLWKKLLEATELKGIKLRE R M N W K K 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 1 0 1 0 1 0 0 9 0 1118.5794 Q13813 Q13813 653 661 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00050384 124.98 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 38696000 0 15465000 23231000 9750 1268 10223 41547;41548;41549 34552;34553 34552 2 0 7559100 5051900 MNFGDFLTVMTQK IKKMISEIDKEGTGKMNFGDFLTVMTQKMS GKMNFGDFLTVMTQKMSEKDTKEEILKAFK K M N Q K M 0 0 1 1 0 1 0 1 0 0 1 1 2 2 0 0 2 0 0 1 0 0 13 0 1530.7211 P41208 P41208 84 96 CETN2 Centrin-2 yes yes 2 0.013519 84.507 By MS/MS 8 0 1 1 1889600 0 1889600 0 9751 791 10224 41550 34554 34554 1 0 859680 0 MNGMLLNDR VHFETQEAAERAIEKMNGMLLNDRKVFVGR ERAIEKMNGMLLNDRKVFVGRFKSRKEREA K M N D R K 0 1 2 1 0 0 0 1 0 0 2 0 2 0 0 0 0 0 0 0 0 0 9 0 1062.495 P11940;Q13310 P11940 158 166 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.065603 67.507 By matching By MS/MS 2.5 0.5 1 1 1 1 15721000 2965700 0 12756000 9752 530;1237 10225 41551;41552 34555 34555 1 3573300 0 2474000 MNGMLLNDRK VHFETQEAAERAIEKMNGMLLNDRKVFVGR RAIEKMNGMLLNDRKVFVGRFKSRKEREAE K M N R K V 0 1 2 1 0 0 0 1 0 0 2 1 2 0 0 0 0 0 0 0 0 0 10 1 1190.59 P11940;Q13310 P11940 158 167 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 0.00063476 138.4 By matching By MS/MS 3 0 2 1 1 8870400 2376000 6494400 0 9753 530;1237 10226 41553;41554 34556 34556 1 2741400 2768600 0 MNLASEPQEVLHIGSAHNR WSPLVTEEGKRHPYKMNLASEPQEVLHIGS SEPQEVLHIGSAHNRSAMPFTASPASSTTA K M N N R S 2 1 2 0 0 1 2 1 2 1 2 0 1 0 1 2 0 0 0 1 0 0 19 0 2102.0327 O00151 O00151 104 122 PDLIM1 PDZ and LIM domain protein 1 yes yes 4 0.0023108 58.672 By MS/MS By matching 6 0 2 1 1 9624900 0 6208500 3416400 9754 105 10227 41555;41556 34557 34557 1 0 2149200 511130 MNLPGEVTFLPLNK DSDEVSTKILMEFNKMNLPGEVTFLPLNKL KMNLPGEVTFLPLNKLDVRDTAYPETNDAI K M N N K L 0 0 2 0 0 0 1 1 0 0 3 1 1 1 2 0 1 0 0 1 0 0 14 0 1571.8381 Q9UQE7 Q9UQE7 579 592 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00039499 127.51 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 1 3 89650000 357800 22417000 66875000 9755 2222 10228 41557;41558;41559;41560;41561 34558;34559;34560 34558 3 357800 10095000 14786000 MNQVEDEVFEEFCR IIQSREREMKDLKEKMNQVEDEVFEEFCRE KMNQVEDEVFEEFCREIGVRNIREFEEEKV K M N C R E 0 1 1 1 1 1 4 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 14 0 1830.7553 Q14683 Q14683 769 782 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.00041101 125.22 By MS/MS 1 0 1 1 1889000 0 0 1889000 9756 1312 10229 41562 34561 34561 1 0 0 407010 MNSLSEANTK ______________________________ ______________________________ - M N T K F 1 0 2 0 0 0 1 0 0 0 1 1 1 0 0 2 1 0 0 0 0 0 10 0 1093.5074 P29508;P48594 P29508 1 10 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 1.1532E-11 172.23 By MS/MS 6.3 3.47 2 1 1 1 1 2 2 10 33125000 33125000 0 0 9757 700 10230;10231 41563;41564;41565;41566;41567;41568;41569;41570;41571;41572 34562;34563;34564;34565;34566;34567 34564 311 5 41312000 0 0 MNVDQAFHELVR RQLKVTYMEASAKIRMNVDQAFHELVRVIR KIRMNVDQAFHELVRVIRKFQEQECPPSPE R M N V R V 1 1 1 1 0 1 1 0 1 0 1 0 1 1 0 0 0 0 0 2 0 0 12 0 1457.7085 P62070 P62070 162 173 RRAS2 Ras-related protein R-Ras2 yes yes 3 0.034241 53.034 By matching By MS/MS 7 0 2 1 1 5381800 0 437750 4944100 9758 1004 10232 41573;41574 34568 34568 1 0 251360 877290 MNVGVAHSEVNPNTR ______________________________ MNVGVAHSEVNPNTRVMNSRGMWLTYALGV - M N T R V 1 1 3 0 0 0 1 1 1 0 0 0 1 0 1 1 1 0 0 3 0 0 15 0 1623.7787 Q9P0S3;Q53FV1 Q9P0S3 1 15 ORMDL1;ORMDL2 ORM1-like protein 1;ORM1-like protein 2 yes no 2 0.00016759 134.75 By matching By MS/MS 8 0 2 1 1 5101400 0 1868600 3232800 9759 1423 10233 41575;41576 34569 34569 1 0 850150 495620 MNVLADALK ______________________________ ______________________________ R M N L K S 2 0 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 9 0 973.52665 P62244 P62244 4 12 RPS15A 40S ribosomal protein S15a yes yes 2 0.0027835 102.51 By MS/MS By MS/MS 8.5 0.5 3 3 4 2 288620000 0 195410000 93209000 9760 1009 10234;10235 41577;41578;41579;41580;41581;41582 34570;34571;34572;34573;34574;34575;34576;34577 34575 481 8 0 141420000 14290000 MNYSDAIVWLK ELNPNFQPPKRPFKRMNYSDAIVWLKEHDV PFKRMNYSDAIVWLKEHDVKKEDGTFYEFG R M N L K E 1 0 1 1 0 0 0 0 0 1 1 1 1 0 0 1 0 1 1 1 0 0 11 0 1338.6642 O43776 O43776 391 401 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.00086737 115.71 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 28531000 0 9446700 19085000 9761 211 10236 41583;41584;41585 34578;34579 34578 2 0 3135000 3443500 MPCAEDYLSVVLNQLCVLHEK GKVGSKCCKHPEAKRMPCAEDYLSVVLNQL YLSVVLNQLCVLHEKTPVSDRVTKCCTESL R M P E K T 1 0 1 1 2 1 2 0 1 0 4 1 1 0 1 1 0 0 1 3 0 0 21 0 2517.2066 CON__P02768-1;P02768 CON__P02768-1 470 490 ALB Serum albumin yes no 3 0.02347 35.389 By MS/MS 9 0 1 1 538400 538400 0 0 + 9762 44 10237 41586 34580 34580 1 302210 0 0 MPCTEDYLSLILNR GKVGTRCCTKPESERMPCTEDYLSLILNRL RMPCTEDYLSLILNRLCVLHEKTPVSEKVT R M P N R L 0 1 1 1 1 0 1 0 0 1 3 0 1 0 1 1 1 0 1 0 0 0 14 0 1723.8273 CON__P02769 CON__P02769 469 482 yes yes 2;3 2.6097E-72 238.86 By MS/MS By MS/MS 5.94 2.22 3 4 2 1 1 4 3 16 2 120000000 104370000 0 15639000 + 9763 45 10238;10239 41587;41588;41589;41590;41591;41592;41593;41594;41595;41596;41597;41598;41599;41600;41601;41602;41603;41604 34581;34582;34583;34584;34585;34586;34587;34588;34589;34590;34591;34592;34593;34594 34588 21 14 82624000 0 3033300 MPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLR RRMEEEQHHWDDRRRMPDGGYPHGPPGPLG RPGMPPQPQGPAPLRRPDSSDDRYVMTKHA R M P L R R 1 2 0 1 0 2 0 8 1 0 4 0 2 0 11 0 0 0 1 1 0 0 34 1 3409.754 Q96KR1 Q96KR1 684 717 ZFR Zinc finger RNA-binding protein yes yes 4 4.9714E-21 83.088 By MS/MS 2.5 0.5 1 1 2 6263800 0 6263800 0 9764 1806 10240 41605;41606 34595;34596 34595 2 0 2752900 0 MPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQK EQWFTEDPGPDEAPRMPEAAPPVAPAPAAP PAPSWPLSSSVPSQKTYQGSYGFRLGFLHS R M P Q K T 10 0 0 0 0 1 1 0 0 0 1 1 1 0 12 5 1 1 0 2 0 0 36 0 3442.7595 P04637 P04637 66 101 TP53 Cellular tumor antigen p53 yes yes 3 2.3936E-11 57.959 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 26659000 0 16327000 10332000 9765 416 10241 41607;41608;41609;41610 34597;34598;34599 34598 3 0 4547700 1618500 MPFPVNHGASSEDTLLK LFNNVDGHLYELDGRMPFPVNHGASSEDTL FPVNHGASSEDTLLKDAAKVCREFTEREQG R M P L K D 1 0 1 1 0 0 1 1 1 0 2 1 1 1 2 2 1 0 0 1 0 0 17 0 1841.8982 P09936 P09936 179 195 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 2;3 0.0002906 98.368 By MS/MS By MS/MS 7 0 3 1 2 48045000 0 9635900 38409000 9766 494 10242 41611;41612;41613 34600;34601;34602;34603;34604 34604 5 0 5533000 6815400 MPGGPKPGGGPGLSTPGGHPKPPHR GPKQGPGPGGPKGGKMPGGPKPGGGPGLST PGLSTPGGHPKPPHRGGGEPRGGRQHHPPY K M P H R G 0 1 0 0 0 0 0 8 2 0 1 2 1 0 8 1 1 0 0 0 0 0 25 2 2369.2175 P23246 P23246 212 236 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3;4;5 3.0647E-16 104.41 By MS/MS By MS/MS 2.58 1.11 4 9 5 5 1 9 15 951110000 0 213860000 737250000 9767 638 10243;10244 41614;41615;41616;41617;41618;41619;41620;41621;41622;41623;41624;41625;41626;41627;41628;41629;41630;41631;41632;41633;41634;41635;41636;41637 34605;34606;34607;34608;34609;34610;34611;34612;34613;34614;34615;34616;34617;34618;34619;34620;34621;34622;34623;34624;34625;34626;34627;34628 34623 290 24 0 94241000 156500000 MPGSVIPPPLVR NIPAGKPSLQTSSARMPGSVIPPPLVRGGQ SARMPGSVIPPPLVRGGQQASSKLGPQASS R M P V R G 0 1 0 0 0 0 0 1 0 1 1 0 1 0 4 1 0 0 0 2 0 0 12 0 1261.7217 Q86YP4 Q86YP4 214 225 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.0075752 91.265 By MS/MS By MS/MS 3 0 2 1 1 0 0 0 0 9768 1563 10245 41638;41639 34629;34630 34629 2 0 0 0 MPIIPFLL HRSYLKEFRDYPPLRMPIIPFLL_______ RDYPPLRMPIIPFLL_______________ R M P L L - 0 0 0 0 0 0 0 0 0 2 2 0 1 1 2 0 0 0 0 0 0 0 8 0 942.56125 Q9NZ01 Q9NZ01 301 308 TECR Very-long-chain enoyl-CoA reductase yes yes 1 0.013477 110.43 By MS/MS 8 1.41 1 1 1 1 1 5 11422000 0 0 11422000 9769 2100 10246 41640;41641;41642;41643;41644 34631 34631 1 0 0 2344200 MPLATSTDHGHNLQTVQLLIK FNRDVEDEILWVGERMPLATSTDHGHNLQT TDHGHNLQTVQLLIKKNQTLQKEIQGHQPR R M P I K K 1 0 1 1 0 2 0 1 2 1 4 1 1 0 1 1 3 0 0 1 0 0 21 0 2316.226 Q01082 Q01082 1505 1525 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3;4 3.1339E-22 182.02 By MS/MS 1 0 3 3 64918000 0 0 64918000 9770 1128 10247 41645;41646;41647 34632;34633;34634 34634 3 0 0 13988000 MPLDDLDREDEVR PLVTELDPDAPIRQKMPLDDLDREDEVRLL QKMPLDDLDREDEVRLLKYLFTLIRAGMTE K M P V R L 0 2 0 4 0 0 2 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 13 1 1601.7355 P57740 P57740 333 345 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 2.8247E-10 175.34 By MS/MS 2 0 2 2 17617000 0 0 17617000 9771 956 10248 41648;41649 34635;34636 34635 2 0 0 3981100 MPLHTIIPLLQELTK LQTRNVNLIKKTVLRMPLHTIIPLLQELTK MPLHTIIPLLQELTKRLQGHPNSAVLMVQW R M P T K R 0 0 0 0 0 1 1 0 1 2 4 1 1 0 2 0 2 0 0 0 0 0 15 0 1746.0114 Q15061 Q15061 497 511 WDR43 WD repeat-containing protein 43 yes yes 2;3 1.8605E-11 177.16 By MS/MS By MS/MS 2.5 0.764 1 1 4 2 4 89308000 0 6315300 82993000 9772 1343 10249;10250 41650;41651;41652;41653;41654;41655 34637;34638;34639;34640;34641;34642;34643;34644;34645 34642 602 9 0 2732100 16148000 MPLPAPSLSHQPPPAPR PSMFGGERRTYPEERMPLPAPSLSHQPPPA LPAPSLSHQPPPAPRVEKKPESKNVDDILK R M P P R V 2 1 0 0 0 1 0 0 1 0 2 0 1 0 7 2 0 0 0 0 0 0 17 0 1791.9454 P49750 P49750 1793 1809 YLPM1 YLP motif-containing protein 1 yes yes 3 0.00054472 87.148 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 11737000 0 3306900 8429700 9773 865 10251 41656;41657;41658 34646;34647 34646 417 2 0 1616300 1833600 MPNGMYDGSALIR NHPYLFPVAAMEAPKMPNGMYDGSALIRAS PKMPNGMYDGSALIRASGKLLLLQKMLKNL K M P I R A 1 1 1 1 0 0 0 2 0 1 1 0 2 0 1 1 0 0 1 0 0 0 13 0 1423.6588 Q14839 Q14839 1035 1047 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00036551 126.71 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 41148000 1410600 13260000 26477000 9774 1321 10252 41659;41660;41661;41662;41663 34648;34649;34650;34651 34651 4 1410600 6357000 5745500 MPNQIATLDFNDTFLSIEHLK IILGYGDPSSAHYSKMPNQIATLDFNDTFL TLDFNDTFLSIEHLKASFPGHNVKVTVEDP K M P L K A 1 0 2 2 0 1 1 0 1 2 3 1 1 2 1 1 2 0 0 0 0 0 21 0 2446.2202 O60306 O60306 705 725 AQR Intron-binding protein aquarius yes yes 3 3.6552E-08 104.06 By MS/MS By MS/MS 2 0 2 1 1 5582700 0 2704400 2878300 9775 225 10253 41664;41665 34652;34653 34653 2 0 1217800 650430 MPQMIVNWQQQQR KRREREQHIAECMAKMPQMIVNWQQQQREN AKMPQMIVNWQQQQRENWEKAQADKERRAR K M P Q R E 0 1 1 0 0 5 0 0 0 1 0 0 2 0 1 0 0 1 0 1 0 0 13 0 1685.813 Q8TAE8 Q8TAE8 128 140 GADD45GIP1 Growth arrest and DNA damage-inducible proteins-interacting protein 1 yes yes 2 0.017184 80.688 By MS/MS By matching 7 0 2 1 1 6980900 0 2801400 4179500 9776 1651 10254 41666;41667 34654 34654 1 0 1608600 741620 MPSESAAQSLAVALPLQTK PGPGVALTADTKIQRMPSESAAQSLAVALP SAAQSLAVALPLQTKADANRTAPSGSEYRH R M P T K A 4 0 0 0 0 2 1 0 0 0 3 1 1 0 2 3 1 0 0 1 0 0 19 0 1941.0241 O43660 O43660 117 135 PLRG1 Pleiotropic regulator 1 yes yes 2;3 6.8923E-15 174.59 By MS/MS By MS/MS 3.75 0.433 1 3 3 1 72599000 0 12476000 60123000 9777 205 10255;10256 41668;41669;41670;41671 34655;34656;34657;34658 34657 83 4 0 4436200 9820000 MPSGEFAR EQLGIPEQEYSCVVKMPSGEFARICRDLSH EYSCVVKMPSGEFARICRDLSHIGDAVVIS K M P A R I 1 1 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 0 0 0 0 8 0 893.40654 P12004 P12004 139 146 PCNA Proliferating cell nuclear antigen yes yes 2 0.022107 82.671 By matching By MS/MS 6 0 2 1 1 23503000 2376000 0 21127000 9778 531 10257 41672;41673 34659 34659 1 3163600 0 3160900 MPTKEDEEEDEPVVIK TVPKSPAFALKNRIRMPTKEDEEEDEPVVI PTKEDEEEDEPVVIKAQPVPHYGVPFKPQI R M P I K A 0 0 0 2 0 0 5 0 0 1 0 2 1 0 2 0 1 0 0 2 0 0 16 1 1886.8819 Q9ULW0 Q9ULW0 497 512 TPX2 Targeting protein for Xklp2 yes yes 3 0.035263 44.005 By MS/MS 2 0 1 1 5622500 0 0 5622500 9779 2193 10258 41674 34660 34660 1 0 0 1270600 MPVGDFFEER VVHSVRREHFSFSPRMPVGDFFEERDTPEG SFSPRMPVGDFFEERDTPEGLQWVQLSAEE R M P E R D 0 1 0 1 0 0 2 1 0 0 0 0 1 2 1 0 0 0 0 1 0 0 10 0 1225.5438 Q9UIF9 Q9UIF9 616 625 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes yes 2 0.0090106 89.247 By MS/MS 1 0 1 1 5342400 0 0 5342400 9780 2163 10259 41675 34661 34661 1 0 0 1151100 MPYLSHQQLPAGILPMVPEVAQAVGVSQGHHTK SGDENGTSNKEDEFRMPYLSHQQLPAGILP EVAQAVGVSQGHHTKDFTRAAPNPAKATVT R M P T K D 3 0 0 0 0 4 1 3 3 1 3 1 2 0 4 2 1 0 1 4 0 0 33 0 3519.8119 O95793 O95793 405 437 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 4;5 8.0592E-06 46.351 By MS/MS 3.5 0.5 1 1 2 9503900 0 9503900 0 9781 341 10260 41676;41677 34662;34663 34663 2 0 3405300 0 MQAHIQDLEEQLDEEEGAR EEEERNQILQNEKKKMQAHIQDLEEQLDEE IQDLEEQLDEEEGARQKLQLEKVTAEAKIK K M Q A R Q 2 1 0 2 0 3 5 1 1 1 2 0 1 0 0 0 0 0 0 0 0 0 19 0 2240.0015 P35580 P35580 948 966 MYH10 Myosin-10 yes yes 3 1.8082E-10 156.13 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 19288000 0 3392000 15896000 9782 753 10261 41678;41679;41680 34664;34665 34665 2 0 1658000 3456600 MQAQMQMQMQGGDGDGGALGHHV EKEAELRRMQEMIARMQAQMQMQMQGGDGD MQGGDGDGGALGHHV_______________ R M Q H V - 2 0 0 2 0 5 0 6 2 0 1 0 4 0 0 0 0 0 0 1 0 0 23 0 2382.9926 Q15019 Q15019 339 361 SEPT2 Septin-2 yes yes 3 1.0355E-20 146.81 By MS/MS 5 0 1 1 9962700 9962700 0 0 9783 1330 10262 41681 34666 34666 1 7981400 0 0 MQAQWER ESHSRVRERSEREQRMQAQWEREERERLEI ERSEREQRMQAQWEREERERLEIARERLAF R M Q E R E 1 1 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 7 0 947.42834 Q15424 Q15424 633 639 SAFB Scaffold attachment factor B1 yes yes 2 0.026609 95.541 By MS/MS 2 0.816 1 1 1 3 15058000 0 0 15058000 9784 1364 10263 41682;41683;41684 34667 34667 1 0 0 3234400 MQASIEK KTPKGPSSVEDIKAKMQASIEKGGSLPKVE SVEDIKAKMQASIEKGGSLPKVEAKFINYV K M Q E K G 1 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 7 0 805.40039 P06748 P06748 251 257 NPM1 Nucleophosmin yes yes 2 0.015757 110.14 By MS/MS By MS/MS 7.83 1.46 2 2 1 1 2 4 75959000 0 52748000 23211000 9785 449 10264 41685;41686;41687;41688;41689;41690 34668;34669;34670 34668 3 0 18387000 4489000 MQEHSDQVPVGNIPR LQTRGSRFIKFQEMKMQEHSDQVPVGNIPR MQEHSDQVPVGNIPRSITVLVEGENTRIAQ K M Q P R S 0 1 1 1 0 2 1 1 1 1 0 0 1 0 2 1 0 0 0 2 0 0 15 0 1705.8206 P33993 P33993 237 251 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 1.5368E-11 105.65 By MS/MS 3 0 2 2 15694000 0 15694000 0 9786 733 10265 41691;41692 34671;34672 34672 2 0 6690100 0 MQEIIASVDHIK ______________________________ ______________________________ - M Q I K F 1 0 0 1 0 1 1 0 1 3 0 1 1 0 0 1 0 0 0 1 0 0 12 0 1382.7228 O95639 O95639 1 12 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes yes 2 0.004326 96.015 By matching By MS/MS 6.33 0.471 2 1 1 2 19237000 0 1315000 17922000 9787 333 10266 41693;41694;41695 34673;34674 34673 2 0 455190 2897800 MQEVVANLQYDDGSGMKR DGDLIESFLDISRPKMQEVVANLQYDDGSG VVANLQYDDGSGMKREATADDLIKVVEELT K M Q K R E 1 1 1 2 0 2 1 2 0 0 1 1 2 0 0 1 0 0 1 2 0 0 18 1 2039.9405 Q16531 Q16531 1105 1122 DDB1 DNA damage-binding protein 1 yes yes 3 0.00011292 93.684 By MS/MS 2 0 1 1 6293900 0 6293900 0 9788 1387 10267 41696 34675 34675 1 0 2834200 0 MQGQEAVLAMSSR TRYLGSRPVKLFRVRMQGQEAVLAMSSRSW VRMQGQEAVLAMSSRSWLSYSYQSRFHLTP R M Q S R S 2 1 0 0 0 2 1 1 0 0 1 0 2 0 0 2 0 0 0 1 0 0 13 0 1406.6646 Q15393 Q15393 706 718 SF3B3 Splicing factor 3B subunit 3 yes yes 2 3.8032E-17 189.66 By matching By MS/MS By MS/MS 3.78 2.25 2 1 2 1 1 2 1 6 2 90084000 19062000 45193000 25829000 9789 1361 10268 41697;41698;41699;41700;41701;41702;41703;41704;41705 34676;34677;34678;34679 34676 4 19062000 20449000 4745300 MQGSLEAHVNGFR KLKDLYIRPNIAQKRMQGSLEAHVNGFRFT KRMQGSLEAHVNGFRFTSVRGDKVDILYNN R M Q F R F 1 1 1 0 0 1 1 2 1 0 1 0 1 1 0 1 0 0 0 1 0 0 13 0 1444.6881 Q9Y5B9 Q9Y5B9 676 688 SUPT16H FACT complex subunit SPT16 yes yes 2;3 2.4569E-05 157.97 By matching By MS/MS By MS/MS 1.43 0.495 4 3 1 2 4 46330000 1555300 0 44775000 9790 2296 10269;10270 41706;41707;41708;41709;41710;41711;41712 34680;34681;34682;34683;34684;34685 34683 741 5 1555300 0 9688800 MQHNLEQQIQAR GLAQQWDQLDQLGMRMQHNLEQQIQARNTT GMRMQHNLEQQIQARNTTGVTEEALKEFSM R M Q A R N 1 1 1 0 0 4 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 12 0 1494.7361 Q13813 Q13813 2304 2315 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 0.00078784 114.5 By MS/MS By MS/MS 1.29 0.452 5 2 3 4 144080000 0 54422000 89654000 9791 1268 10271;10272 41713;41714;41715;41716;41717;41718;41719 34686;34687;34688;34689;34690 34686 586 5 0 26601000 19435000 MQKEITALAPSTMK VLSGGTTMYPGIADRMQKEITALAPSTMKI RMQKEITALAPSTMKIKIIAPPERKYSVWI R M Q M K I 2 0 0 0 0 1 1 0 0 1 1 2 2 0 1 1 2 0 0 0 0 0 14 1 1547.8051 P60709;P63261;P68032;P63267;P68133;P62736 P60709 313 326 ACTB;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle no no 2;3 0.0001269 162.68 By MS/MS 5.75 0.829 2 1 1 4 22503000 0 22503000 0 9792 966;1069;1075 10273 41720;41721;41722;41723 34691;34692 34692 2 0 6266500 0 MQLKPMEINPEMLNK ______________________________ MQLKPMEINPEMLNKVLSRLGVAGQWRFVD - M Q N K V 0 0 2 0 0 1 2 0 0 1 2 2 3 0 2 0 0 0 0 0 0 0 15 1 1814.9093 P09936 P09936 1 15 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 3 0.010503 60.968 By MS/MS By MS/MS 7 0 2 1 1 24870000 0 4404000 20466000 9793 494 10274 41724;41725 34693;34694 34694 2 0 2528800 3631500 MQLPSAAGLHPTGHQSKEELGR KNELNRLRNLARAHKMQLPSAAGLHPTGHQ GLHPTGHQSKEELGRAMQVAKVSTASVGRF K M Q G R A 2 1 0 0 0 2 2 3 2 0 3 1 1 0 2 2 1 0 0 0 0 0 22 1 2343.1754 Q15050 Q15050 199 220 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 5 0.019452 33.79 By MS/MS 5 0 1 1 4551100 0 4551100 0 9794 1337 10275 41726 34695 34695 0 0 1173100 0 MQLQQELELLNAYQSK LRLDEAQEAECQVLKMQLQQELELLNAYQS QLQQELELLNAYQSKIKMQAEAQHDRELRE K M Q S K I 1 0 1 0 0 4 2 0 0 0 4 1 1 0 0 1 0 0 1 0 0 0 16 0 1934.9772 Q7L7X3 Q7L7X3 803 818 TAOK1 Serine/threonine-protein kinase TAO1 yes yes 2 1.3094E-12 99.011 By MS/MS 2 0 1 1 0 0 0 0 9795 1526 10276 41727 34696 34696 1 0 0 0 MQLSAELQSDTEEILSK PHVKTNLLLQAHLSRMQLSAELQSDTEEIL LSAELQSDTEEILSKAIRLIQACVDVLSSN R M Q S K A 1 0 0 1 0 2 3 0 0 1 3 1 1 0 0 3 1 0 0 0 0 0 17 0 1920.935 O75643 O75643 1902 1918 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 1.1817E-06 158.31 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 27072000 0 2987100 24085000 9796 277 10277;10278 41728;41729;41730 34697;34698;34699 34698 110 3 0 1460000 5240100 MQLSEIMER GAVREIRKDNQFLARMQLSEIMERDAERKR NQFLARMQLSEIMERDAERKRKVKQLFNSL R M Q E R D 0 1 0 0 0 1 2 0 0 1 1 0 2 0 0 1 0 0 0 0 0 0 9 0 1135.5366 P78316 P78316 817 825 NOP14 Nucleolar protein 14 yes yes 2 0.00060112 134.48 By matching By MS/MS By MS/MS 2 0 3 1 1 1 15559000 4529400 2424900 8605100 9797 1083 10279 41731;41732;41733 34700;34701 34701 2 5457400 1092000 1944600 MQLWLNDPNNVEK PWHKLSLKGREPFVRMQLWLNDPNNVEKLM VRMQLWLNDPNNVEKLMDMKRMEKKAYMKR R M Q E K L 0 0 3 1 0 1 1 0 0 0 2 1 1 0 1 0 0 1 0 1 0 0 13 0 1599.7715 P39880 P39880 1185 1197 CUX1 Homeobox protein cut-like 1 yes yes 2 0.0041615 76.843 By MS/MS 1.5 0.5 1 1 2 4316900 0 0 4316900 9798 781 10280 41734;41735 34702;34703 34702 2 0 0 975530 MQNDAGEFVDLYVPR ______________________________ MQNDAGEFVDLYVPRKCSASNRIIGAKDHA - M Q P R K 1 1 1 2 0 1 1 1 0 0 1 0 1 1 1 0 0 0 1 2 0 0 15 0 1752.8141 P63220 P63220 1 15 RPS21 40S ribosomal protein S21 yes yes 2;3 3.605E-90 252.88 By matching By MS/MS By MS/MS 9.08 1.11 2 1 3 6 1 4 7 115770000 570540 57672000 57528000 9799 1066 10281;10282 41736;41737;41738;41739;41740;41741;41742;41743;41744;41745;41746;41747 34704;34705;34706;34707;34708;34709;34710;34711;34712 34705 513 9 320250 288640000 25071000 MQNDAGEFVDLYVPRK ______________________________ QNDAGEFVDLYVPRKCSASNRIIGAKDHAS - M Q R K C 1 1 1 2 0 1 1 1 0 0 1 1 1 1 1 0 0 0 1 2 0 0 16 1 1880.9091 P63220 P63220 1 16 RPS21 40S ribosomal protein S21 yes yes 2 3.2218E-05 106.01 By MS/MS 10 0 1 1 1450700 0 1450700 0 9800 1066 10283 41748 34713 34713 513 1 0 7339200 0 MQQEAQHVLFLSK FKQRKGESDGAYIHRMQQEAQHVLFLSKNQ HRMQQEAQHVLFLSKNQAIRQPEVQAAPKE R M Q S K N 1 0 0 0 0 3 1 0 1 0 2 1 1 1 0 1 0 0 0 1 0 0 13 0 1557.7973 Q6PK04 Q6PK04 129 141 CCDC137 Coiled-coil domain-containing protein 137 yes yes 2 0.0012152 112.02 By MS/MS 6 0 1 1 5477800 0 0 5477800 9801 1496 10284 41749 34714 34714 1 0 0 819530 MQQENMKPQEQLTLEPYER STASAEAVFASEVKKMQQENMKPQEQLTLE NMKPQEQLTLEPYERDHAVVVGVYRPPPKV K M Q E R D 0 1 1 0 0 4 4 0 0 0 2 1 2 0 2 0 1 0 1 0 0 0 19 1 2391.1199 P22087 P22087 286 304 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2;3 7.4803E-156 285.58 By MS/MS By MS/MS 5.78 0.629 3 5 1 1 8 208940000 0 12624000 196320000 9802 627 10285;10286 41750;41751;41752;41753;41754;41755;41756;41757;41758 34715;34716;34717;34718;34719;34720;34721 34719 277;278 7 0 4370100 28946000 MQQNIQELEEQLEEEESAR EEEERCQHLQAEKKKMQQNIQELEEQLEEE IQELEEQLEEEESARQKLQLEKVTTEAKLK K M Q A R Q 1 1 1 0 0 4 7 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0 19 0 2332.0489 P35579 P35579 941 959 MYH9 Myosin-9 yes yes 3 9.0269E-18 180.88 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 19183000 0 6655800 12528000 9803 752 10287 41759;41760;41761;41762 34722;34723;34724;34725 34722 4 0 3253300 2736500 MQQQLDEYQELLDIK LLAEKEREMAEMRARMQQQLDEYQELLDIK MQQQLDEYQELLDIKLALDMEIHAYRKLLE R M Q I K L 0 0 0 2 0 4 2 0 0 1 3 1 1 0 0 0 0 0 1 0 0 0 15 0 1892.919 P02545 P02545 352 366 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 6.4686E-18 193.73 By MS/MS By MS/MS By MS/MS 3.11 1.29 2 3 8 2 2 1 2 4 12 391430000 11619000 19742000 360070000 9804 387 10288;10289 41763;41764;41765;41766;41767;41768;41769;41770;41771;41772;41773;41774;41775;41776;41777;41778;41779;41780 34726;34727;34728;34729;34730;34731;34732;34733;34734;34735;34736;34737;34738;34739 34730 124 14 13406000 8488500 67861000 MQSLDKDIVALMVR DYTCITFQPDLSKFKMQSLDKDIVALMVRR KMQSLDKDIVALMVRRAYDIAGSTKDVKVF K M Q V R R 1 1 0 2 0 1 0 0 0 1 2 1 2 0 0 1 0 0 0 2 0 0 14 1 1617.8582 P11388 P11388 228 241 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 4.7098E-57 232.17 By MS/MS By MS/MS 1.43 0.495 4 3 2 5 123220000 0 5179900 118040000 9805 524 10290;10291 41781;41782;41783;41784;41785;41786;41787 34740;34741;34742;34743;34744;34745;34746 34744 226 7 0 2380800 25698000 MQTPVNIPVPVLR ______________________________ ______________________________ - M Q L R L 0 1 1 0 0 1 0 0 0 1 1 0 1 0 3 0 1 0 0 3 0 0 13 0 1462.833 Q9H840 Q9H840 1 13 GEMIN7 Gem-associated protein 7 yes yes 2 0.010663 77.662 By matching By MS/MS 8.2 0.748 1 2 2 1 4 5121700 200910 4920700 0 9806 1994 10292;10293 41788;41789;41790;41791;41792 34747;34748;34749;34750 34747 691 3 433010 3159000 0 MQVSSLNEVK ______________________________ ______________________________ - M Q V K I 0 0 1 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 0 2 0 0 10 0 1133.5751 Q9BSC4 Q9BSC4 1 10 NOL10 Nucleolar protein 10 yes yes 2 0.0093855 83.358 By MS/MS 2.5 0.5 1 1 2 5183100 0 5183100 0 9807 1895 10294 41793;41794 34751 34751 1 0 2228300 0 MREDYDSVEQDGDEPGPQR RKGRGFGSEEGSRARMREDYDSVEQDGDEP YDSVEQDGDEPGPQRSVEGWILFVTGVHEE R M R Q R S 0 2 0 4 0 2 3 2 0 0 0 0 1 0 2 1 0 0 1 1 0 0 19 1 2221.9182 Q9Y5S9 Q9Y5S9 50 68 RBM8A RNA-binding protein 8A yes yes 2;3 0 391.87 By MS/MS By MS/MS 7 0 6 1 5 132460000 0 3876000 128590000 9808 2302 10295;10296 41795;41796;41797;41798;41799;41800 34752;34753;34754;34755;34756;34757 34754 744 6 0 2225600 22817000 MREEVITLIR DQSDQDFQEELDLMKMREEVITLIRSNQQL LDLMKMREEVITLIRSNQQLENDLNLMDIK K M R I R S 0 2 0 0 0 0 2 0 0 2 1 0 1 0 0 0 1 0 0 1 0 0 10 1 1258.7067 P46940 P46940 892 901 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2;3 1.2067E-15 180.67 By MS/MS 1.33 0.471 2 1 3 20013000 0 0 20013000 9809 835 10297 41801;41802;41803 34758;34759;34760 34760 3 0 0 4396000 MREIVHLQAGQCGNQIGAK ______________________________ VHLQAGQCGNQIGAKFWEVISDEHGIDPTG - M R A K F 2 1 1 0 1 3 1 3 1 2 1 1 1 0 0 0 0 0 0 1 0 0 19 1 2109.0572 P68371;P04350 P68371 1 19 TUBB4B;TUBB4A Tubulin beta-4B chain;Tubulin beta-4A chain no no 3 1.9066E-06 104.89 By MS/MS 4.5 0.5 1 1 2 13202000 0 13202000 0 9810 1079;414 10298 41804;41805 34761;34762 34761 2 0 3862100 0 MRIESLSSQLSNLQK TSTVNSAREELMESRMRIESLSSQLSNLQK MRIESLSSQLSNLQKESRACLERIQELEDL R M R Q K E 0 1 1 0 0 2 1 0 0 1 3 1 1 0 0 4 0 0 0 0 0 0 15 1 1732.9142 P20700 P20700 298 312 LMNB1 Lamin-B1 yes yes 2;3 1.021E-25 203.97 By MS/MS By MS/MS 2.64 1.07 2 2 6 1 4 7 173640000 0 83408000 90234000 9811 619 10299;10300 41806;41807;41808;41809;41810;41811;41812;41813;41814;41815;41816 34763;34764;34765;34766;34767;34768 34766 272 6 0 35736000 17428000 MRLEKEIETYHNLLEGGQEDFESSGAGK IECQNQEYSLLLSIKMRLEKEIETYHNLLE LEGGQEDFESSGAGKIGLGGRGGSGGSYGR K M R G K I 1 1 1 1 0 1 6 4 1 1 3 2 1 1 0 2 1 0 1 0 0 0 28 2 3166.4877 P35527;CON__P35527 P35527 445 472 KRT9 Keratin, type I cytoskeletal 9 yes no 4 0.01743 35.888 By MS/MS 8 0 1 1 8918500 8918500 0 0 + 9812 750 10301 41817 34769 34769 0 7656900 0 0 MRLESLSYQLSGLQK DKAASAAREELKEARMRLESLSYQLSGLQK MRLESLSYQLSGLQKQASAAEDRIRELEEA R M R Q K Q 0 1 0 0 0 2 1 1 0 0 4 1 1 0 0 3 0 0 1 0 0 0 15 1 1751.924 Q03252 Q03252 312 326 LMNB2 Lamin-B2 yes yes 2;3 3.6471E-07 173.19 By MS/MS By MS/MS 3.25 0.433 3 1 3 1 27201000 0 17407000 9793800 9813 1156 10302;10303 41818;41819;41820;41821 34770;34771;34772 34772 555 3 0 7303800 1899500 MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR ARRYIGIVKQAGLERMRPGAYSTGYGGYEE GLSDGYGFTTDLFGRDLSYCLSGMYDHRYG R M R G R D 1 2 0 2 0 0 2 8 0 0 2 0 1 2 1 3 3 0 5 0 0 0 32 1 3473.5147 P52597 P52597 231 262 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3 2.1337E-67 192.87 By MS/MS 5 0 1 1 19357000 0 0 19357000 9814 910 10304 41822 34773 34773 1 0 0 2700000 MRPGVACSVSQAQK EIRNFLGEKYIRRVRMRPGVACSVSQAQKD RMRPGVACSVSQAQKDELILEGNDIELVSN R M R Q K D 2 1 0 0 1 2 0 1 0 0 0 1 1 0 1 2 0 0 0 2 0 0 14 1 1517.7443 Q5IFJ7;P32969 Q5IFJ7 128 141 RPL9 60S ribosomal protein L9 yes no 2;3 0.0032104 133.91 By matching By MS/MS 7 0 3 1 2 33407000 0 1009100 32398000 9815 729 10305;10306 41823;41824;41825 34774;34775 34775 330 2 0 579450 5748800 MRPLTEEETR ______________________________ ______________________________ - M R T R V 0 2 0 0 0 0 3 0 0 0 1 0 1 0 1 0 2 0 0 0 0 0 10 1 1260.6132 Q9Y221 Q9Y221 1 10 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes yes 2;3 0.0001514 115.18 By matching By MS/MS 7.29 0.452 5 2 2 5 61205000 0 1690800 59514000 9816 2226 10307;10308 41826;41827;41828;41829;41830;41831;41832 34776;34777;34778;34779 34778 721 4 0 970870 10555000 MRQDPAHPHVVATGGK SDPLLELRVGPGVCRMRQDPAHPHVVATGG RQDPAHPHVVATGGKENALKIWDLQGSEEP R M R G K E 2 1 0 1 0 1 0 2 2 0 0 1 1 0 2 0 1 0 0 2 0 0 16 1 1699.8577 Q6RFH5 Q6RFH5 136 151 WDR74 WD repeat-containing protein 74 yes yes 4 0.056393 33.769 By MS/MS 5 0 1 1 1171100 0 1171100 0 9817 1499 10309 41833 34780 34780 1 0 301860 0 MRYVASYLLAALGGNSSPSAK ______________________________ YLLAALGGNSSPSAKDIKKILDSVGIEADD - M R A K D 4 1 1 0 0 0 0 2 0 0 3 1 1 0 1 4 0 0 2 1 0 0 21 1 2155.1096 P05387 P05387 1 21 RPLP2 60S acidic ribosomal protein P2 yes yes 3 0.00031532 60.735 By MS/MS 9 0 1 1 0 0 0 0 9818 431 10310 41834 34781 34781 1 0 0 0 MSAATVLSR GLEEVVQNLLETQGRMSAATVLSREPYMCA LETQGRMSAATVLSREPYMCAQCKTDFTCR R M S S R E 2 1 0 0 0 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 9 0 934.4906 Q86YP4 Q86YP4 404 412 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.00065644 133.58 By MS/MS 3 0 1 1 2973400 0 2973400 0 9819 1563 10311 41835 34782 34782 1 0 1267600 0 MSATFIGNNTAIQELFK NVKTAVCDIPPRGLKMSATFIGNNTAIQEL ATFIGNNTAIQELFKRVSEQFTAMFRRKAF K M S F K R 2 0 2 0 0 1 1 1 0 2 1 1 1 2 0 1 2 0 0 0 0 0 17 0 1883.9451 Q3ZCM7 Q3ZCM7 363 379 TUBB8 Tubulin beta-8 chain yes yes 2 0.058523 49.934 By MS/MS 5 0 1 1 0 0 0 0 9820 1415 10312 41836 34783 34783 1 0 0 0 MSATFIGNSTAIQELFK NVKTAVCDIPPRGLKMSATFIGNSTAIQEL ATFIGNSTAIQELFKRISEQFTAMFRRKAF K M S F K R 2 0 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 17 0 1856.9342 P68371;Q13885;Q9BVA1 P68371 363 379 TUBB4B;TUBB2A;TUBB2B Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 4.5449E-28 194.24 By MS/MS By MS/MS By MS/MS 5.5 2.39 2 1 2 5 3 4 1 5 3 3 10 13 1061500000 12764000 532030000 516750000 9821 1079;1274 10313;10314 41837;41838;41839;41840;41841;41842;41843;41844;41845;41846;41847;41848;41849;41850;41851;41852;41853;41854;41855;41856;41857;41858;41859;41860;41861;41862 34784;34785;34786;34787;34788;34789;34790;34791;34792;34793;34794;34795;34796;34797;34798;34799;34800;34801;34802;34803;34804;34805;34806 34798 521 23 9985700 163030000 88065000 MSATFIGNSTAIQELFKR NVKTAVCDIPPRGLKMSATFIGNSTAIQEL TFIGNSTAIQELFKRISEQFTAMFRRKAFL K M S K R I 2 1 1 0 0 1 1 1 0 2 1 1 1 2 0 2 2 0 0 0 0 0 18 1 2013.0353 P68371;Q13885;Q9BVA1 P68371 363 380 TUBB4B;TUBB2A;TUBB2B Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 3 2.0822E-08 110.56 By matching By MS/MS 4.57 1.05 1 3 1 2 1 6 183770000 8393300 175380000 0 9822 1079;1274 10315;10316 41863;41864;41865;41866;41867;41868;41869 34807;34808;34809;34810;34811;34812 34809 521 5 6548200 51351000 0 MSFGEIEEDAYQEDLGFSLGHLGK KERLGLTEIRKQANRMSFGEIEEDAYQEDL AYQEDLGFSLGHLGKSGSGRVRQTQVNEAT R M S G K S 1 0 0 2 0 1 4 4 1 1 3 1 1 2 0 2 0 0 1 0 0 0 24 0 2671.2112 Q8WWY3 Q8WWY3 378 401 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 3 0.067422 18.699 By MS/MS 4 0 1 1 6188700 0 0 6188700 9823 1691 10317 41870 34813 34813 1 0 0 1010800 MSGDLSSNVTVSVTSSTISSNVASK EIATYRKLLEGEECRMSGDLSSNVTVSVTS VSVTSSTISSNVASKAAFGGSGGRGSSSGG R M S S K A 1 0 2 1 0 0 0 1 0 1 1 1 1 0 0 9 3 0 0 4 0 0 25 0 2457.1905 CON__P35908;CON__P35908v2;P35908 CON__P35908 497 521 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 4.5787E-33 171.23 By MS/MS By MS/MS By MS/MS 7.6 2.58 1 1 4 2 2 7 1 2 95795000 76833000 2450700 16511000 + 9824 65;66 10318;10319 41871;41872;41873;41874;41875;41876;41877;41878;41879;41880 34814;34815;34816;34817;34818;34819;34820;34821;34822;34823 34822 51 10 62162000 1115000 2980600 MSGECAPNVSVSVSTSHTTISGGGSR EIATYRTLLEGEESRMSGECAPNVSVSVST SVSTSHTTISGGGSRGGGGGGYGSGGSSYG R M S S R G 1 1 1 0 1 0 1 4 1 1 0 0 1 0 1 7 3 0 0 3 0 0 26 0 2564.1595 P04264;CON__P04264 P04264 493 518 KRT1 Keratin, type II cytoskeletal 1 yes no 3 5.7296E-54 206.46 By MS/MS By MS/MS By MS/MS 5.17 2.76 3 4 3 3 3 4 2 4 2 2 17 2 11 900960000 715910000 5489400 179560000 + 9825 413 10320;10321 41881;41882;41883;41884;41885;41886;41887;41888;41889;41890;41891;41892;41893;41894;41895;41896;41897;41898;41899;41900;41901;41902;41903;41904;41905;41906;41907;41908;41909;41910 34824;34825;34826;34827;34828;34829;34830;34831;34832;34833;34834;34835;34836;34837;34838;34839;34840;34841;34842;34843;34844;34845;34846;34847;34848;34849;34850;34851 34825 139 27 686900000 2486300 36255000 MSGGWELELNGTEAK IKEERKIQKHKTLPKMSGGWELELNGTEAK MSGGWELELNGTEAKLVRKVAGEKITVTFN K M S A K L 1 0 1 0 0 0 3 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 15 0 1620.7454 Q07021 Q07021 105 119 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 2 5.8288E-05 158.02 By MS/MS 6.5 0.5 1 1 2 14980000 0 0 14980000 9826 1175 10322 41911;41912 34852;34853 34853 2 0 0 2540900 MSGLHISGGQSVLEPIK SSNNRSFFSVESGTKMSGLHISGGQSVLEP GLHISGGQSVLEPIKSVNQSINQTVSQTMS K M S I K S 0 0 0 0 0 1 1 3 1 2 2 1 1 0 1 3 0 0 0 1 0 0 17 0 1751.924 Q14966 Q14966 293 309 ZNF638 Zinc finger protein 638 yes yes 3 0.05125 39.348 By MS/MS 1 0 1 1 2950600 0 2950600 0 9827 1324 10323 41913 34854 34854 0 0 1442200 0 MSIPEALR GNFIAGVLIQGTQERMSIPEALRRHILRPG IQGTQERMSIPEALRRHILRPGTALVLLEA R M S L R R 1 1 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 0 0 0 0 8 0 915.48479 P58107 P58107 1585 1592 EPPK1 Epiplakin yes yes 2 0.022107 82.671 By MS/MS 1 0 1 1 5014500 0 5014500 0 9828 958 10324 41914 34855 34855 1 0 2451000 0 MSIYQAMWK GVLVPAKDQPGRQEKMSIYQAMWKGVLRPG PGRQEKMSIYQAMWKGVLRPGTALVLLEAQ K M S W K G 1 0 0 0 0 1 0 0 0 1 0 1 2 0 0 1 0 1 1 0 0 0 9 0 1156.5409 P58107 P58107 2243 2251 EPPK1 Epiplakin yes no 2 0.00052164 135.77 By MS/MS 1.83 0.898 3 1 2 6 65167000 0 65167000 0 9829 958 10325;10326 41915;41916;41917;41918;41919;41920 34856;34857;34858;34859 34858 457;458 4 0 31508000 0 MSLLQLVEILQSK LSDKKRPETVATQFKMSLLQLVEILQSKEP FKMSLLQLVEILQSKEPAYVRCIKPNDAKQ K M S S K E 0 0 0 0 0 2 1 0 0 1 4 1 1 0 0 2 0 0 0 1 0 0 13 0 1500.8586 O00159 O00159 606 618 MYO1C Unconventional myosin-Ic yes yes 2;3 0.00024072 120.96 By MS/MS By MS/MS 2.17 0.687 1 3 2 1 5 35391000 0 1015700 34376000 9830 106 10327 41921;41922;41923;41924;41925;41926 34860;34861;34862 34862 3 0 457400 7706200 MSLVNSR QLCSFEIYEVPWEDRMSLVNSRCQEA____ YEVPWEDRMSLVNSRCQEA___________ R M S S R C 0 1 1 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 7 0 805.41162 P01036;P09228 P01036 131 137 CST4;CST2 Cystatin-S;Cystatin-SA yes no 2 0.002229 140.12 By MS/MS By matching 5 2.98 1 1 2 1 1 1 1 1 7 2 102600000 97997000 0 4599600 9831 372 10328 41927;41928;41929;41930;41931;41932;41933;41934;41935 34863;34864;34865;34866;34867;34868 34868 6 126560000 0 872280 MSMKEVDEQMLNVQNK RHGRYLTVAAVFRGRMSMKEVDEQMLNVQN SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT R M S N K N 0 0 2 1 0 2 2 0 0 0 1 2 3 0 0 1 0 0 0 2 0 0 16 1 1922.89 P07437;P68371;Q13885;Q9BVA1 P68371 321 336 TUBB;TUBB4B;TUBB2A;TUBB2B Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain no no 2;3 0.0030065 73.707 By MS/MS By MS/MS 4.75 0.433 1 3 3 1 11258000 0 11258000 0 9832 1079;462;1274 10329;10330 41936;41937;41938;41939 34869;34870;34871 34870 176;178;179 3 0 3014800 0 MSNWVGILSHGLR REDLHNRMLLWHGSRMSNWVGILSHGLRIA SRMSNWVGILSHGLRIAPPEAPITGYMFGK R M S L R I 0 1 1 0 0 0 0 2 1 1 2 0 1 0 0 2 0 1 0 1 0 0 13 0 1468.7609 Q9UGN5 Q9UGN5 432 444 PARP2 Poly [ADP-ribose] polymerase 2 yes yes 3 0.018433 59.796 By MS/MS 3 0 1 1 5767100 0 0 5767100 9833 2144 10331 41940 34872 34872 1 0 0 1118500 MSPLSIVTALVDK GVLICYMHNKIHSAKMSPLSIVTALVDKID AKMSPLSIVTALVDKIDMCKKSLSPEQDIK K M S D K I 1 0 0 1 0 0 0 0 0 1 2 1 1 0 1 2 1 0 0 2 0 0 13 0 1372.7636 Q9Y305 Q9Y305 139 151 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.005745 98.353 By MS/MS By MS/MS 5 0.632 1 3 1 2 3 18798000 0 6883900 11914000 9834 2256 10332;10333 41941;41942;41943;41944;41945 34873;34874;34875;34876 34876 4 0 1774500 1827300 MSPTPPLFSLPEAR ______________________________ ______________________________ - M S A R T 1 1 0 0 0 0 1 0 0 0 2 0 1 1 4 2 1 0 0 0 0 0 14 0 1541.7912 Q96FV9 Q96FV9 1 14 THOC1 THO complex subunit 1 yes yes 2 0.0068904 77.305 By MS/MS By MS/MS 3 0 2 1 1 5323200 0 1470000 3853200 9835 1783 10334 41946;41947 34877;34878 34878 2 0 626660 747340 MSPYKDILETHLR AHLPDVCVNLMKALKMSPYKDILETHLREK LKMSPYKDILETHLREKITAQSIEELCAVN K M S L R E 0 1 0 1 0 0 1 0 1 1 2 1 1 0 1 1 1 0 1 0 0 0 13 1 1601.8236 P78527 P78527 1408 1420 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.0056228 76.868 By MS/MS 1 0 1 1 9618200 0 0 9618200 9836 1089 10335 41948 34879 34879 1 0 0 2072400 MSQEEVNVFR PFRKNFYVEVPELAKMSQEEVNVFRLEMEG PELAKMSQEEVNVFRLEMEGITVKGKGCPK K M S F R L 0 1 1 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 10 0 1237.5761 Q7L014 Q7L014 345 354 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.00039478 133.68 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 1 3 19376000 1071600 4569700 13735000 9837 1520 10336 41949;41950;41951;41952;41953 34880;34881;34882 34880 3 1071600 2057800 3012600 MSQLEVK KNTNIAQKQEAFSIRMSQLEVKEKELNKLK KQEAFSIRMSQLEVKEKELNKLKQESDQLV R M S V K E 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 7 0 833.43169 P15924 P15924 316 322 DSP Desmoplakin yes yes 2 0.021018 100.74 By MS/MS 6.5 3.5 1 1 1 1 4 24605000 24605000 0 0 9838 572 10337 41954;41955;41956;41957 34883;34884;34885;34886 34886 3 29149000 0 0 MSQVAPSLSALIGEAVGAR LSEYRQSLHTYLRSKMSQVAPSLSALIGEA APSLSALIGEAVGARLIAHAGSLTNLAKYP K M S A R L 4 1 0 0 0 1 1 2 0 1 2 0 1 0 1 3 0 0 0 2 0 0 19 0 1855.9826 O00567 O00567 289 307 NOP56 Nucleolar protein 56 yes yes 2;3 2.5373E-40 207.39 By matching By MS/MS By MS/MS 3.24 1.23 2 3 8 5 2 1 1 14 6 434170000 571220 147610000 285980000 9839 130 10338;10339 41958;41959;41960;41961;41962;41963;41964;41965;41966;41967;41968;41969;41970;41971;41972;41973;41974;41975;41976;41977;41978 34887;34888;34889;34890;34891;34892;34893;34894;34895;34896;34897;34898;34899;34900;34901;34902;34903;34904;34905;34906 34906 68 20 571220 56732000 55295000 MSQVPAPVPLMSLR ARPPPSMSAAGLAARMSQVPAPVPLMSLRT RMSQVPAPVPLMSLRTAPAANLASRIPAAS R M S L R T 1 1 0 0 0 1 0 0 0 0 2 0 2 0 3 2 0 0 0 2 0 0 14 0 1524.8156 Q9UQ35 Q9UQ35 2208 2221 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.011189 80.979 By MS/MS By MS/MS 1.6 0.8 3 1 1 2 3 43511000 0 18878000 24633000 9840 2219 10340;10341 41979;41980;41981;41982;41983 34907;34908;34909 34907 711 3 0 9227100 5213000 MSSPEDDSDTKR PAPKESSTSEGADQKMSSPEDDSDTKRLSK DQKMSSPEDDSDTKRLSKEEKGRSSCGRNF K M S K R L 0 1 0 3 0 0 1 0 0 0 0 1 1 0 1 3 1 0 0 0 0 0 12 1 1366.5671 Q15424 Q15424 382 393 SAFB Scaffold attachment factor B1 yes yes 3 0.00070015 105.36 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 11445000 0 8836700 2608400 9841 1364 10342 41984;41985 34910;34911 34910 2 0 3979300 505900 MSSYAFFVQTCR ______________________________ RGKMSSYAFFVQTCREEHKKKHPDSSVNFA K M S C R E 1 1 0 0 1 1 0 0 0 0 0 0 1 2 0 2 1 0 1 1 0 0 12 0 1495.6588 P09429;B2RPK0;P26583 P26583 13 24 HMGB1;HMGB1P1;HMGB2 High mobility group protein B1;Putative high mobility group protein B1-like 1;High mobility group protein B2 no no 2 2.5063E-45 218.47 By matching By MS/MS 6.6 0.49 2 3 1 4 132710000 749120 0 131960000 9842 670;484 10343;10344 41986;41987;41988;41989;41990 34912;34913;34914;34915 34912 198 4 1614500 0 21470000 MSTSPEAFLALR ESKVPADLLKRAFVRMSTSPEAFLALRSHF FVRMSTSPEAFLALRSHFASSHALICISHW R M S L R S 2 1 0 0 0 0 1 0 0 0 2 0 1 1 1 2 1 0 0 0 0 0 12 0 1321.67 P78527 P78527 3890 3901 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0090354 90.108 By MS/MS 1 0 1 1 0 0 0 0 9843 1089 10345 41991 34916 34916 1 0 0 0 MSVEADINGLR ADDFRTKYETELNLRMSVEADINGLRRVLD LNLRMSVEADINGLRRVLDELTLARADLEM R M S L R R 1 1 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 11 0 1203.5918 CON__P02533;P02533;CON__Q6IFX2;CON__P08727;P08727 CON__P02533 212 222 KRT14;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 19 no no 2 6.1033E-06 152.34 By MS/MS By matching By MS/MS 4.25 1.89 3 1 4 4 2 2 8 1 7 134030000 68807000 770240 64457000 + 9844 35;51;91 10346;10347 41992;41993;41994;41995;41996;41997;41998;41999;42000;42001;42002;42003;42004;42005;42006;42007 34917;34918;34919;34920;34921;34922;34923;34924 34917 10 7 61447000 255610 9696200 MSVEADINGLRR ADDFRTKYETELNLRMSVEADINGLRRVLD NLRMSVEADINGLRRVLDELTLARADLEMQ R M S R R V 1 2 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 1 0 0 12 1 1359.6929 CON__P02533;P02533;CON__Q6IFX2;CON__P08727;P08727 CON__P02533 212 223 KRT14;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 19 no no 2;3 2.3714E-72 240.47 By MS/MS By MS/MS By MS/MS 4.45 2.57 4 3 4 5 6 2 1 2 2 14 3 12 425990000 199030000 17888000 209080000 + 9845 35;51;91 10348;10349 42008;42009;42010;42011;42012;42013;42014;42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028;42029;42030;42031;42032;42033;42034;42035;42036 34925;34926;34927;34928;34929;34930;34931;34932;34933;34934;34935;34936;34937;34938;34939;34940;34941;34942;34943;34944;34945;34946 34945 10 21 195250000 4870700 32880000 MSVQPTVSLGGFEITPPVVLR NYEGSPIKVTLATLKMSVQPTVSLGGFEIT VSLGGFEITPPVVLRLKCGSGPVHISGQHL K M S L R L 0 1 0 0 0 1 1 2 0 1 2 0 1 1 3 2 2 0 0 4 0 0 21 0 2226.2082 P06748 P06748 81 101 NPM1 Nucleophosmin yes yes 2;3 7.0905E-187 297.72 By MS/MS By MS/MS By MS/MS 5.53 2.25 3 3 5 5 7 9 7 8 4 2 24 25 2722700000 1645200 1794600000 926470000 9846 449 10350;10351 42037;42038;42039;42040;42041;42042;42043;42044;42045;42046;42047;42048;42049;42050;42051;42052;42053;42054;42055;42056;42057;42058;42059;42060;42061;42062;42063;42064;42065;42066;42067;42068;42069;42070;42071;42072;42073;42074;42075;42076;42077;42078;42079;42080;42081;42082;42083;42084;42085;42086;42087 34947;34948;34949;34950;34951;34952;34953;34954;34955;34956;34957;34958;34959;34960;34961;34962;34963;34964;34965;34966;34967;34968;34969;34970;34971;34972;34973;34974;34975;34976;34977;34978;34979;34980;34981;34982;34983;34984;34985;34986;34987;34988;34989;34990;34991;34992;34993;34994;34995;34996;34997;34998;34999;35000;35001;35002;35003;35004;35005;35006;35007;35008;35009;35010;35011;35012;35013 34960 168 67 1412400 623560000 148540000 MTDFDRFK TRWAKKIEARERKAKMTDFDRFKVMKAKKM ARERKAKMTDFDRFKVMKAKKMRNRIIKNE K M T F K V 0 1 0 2 0 0 0 0 0 0 0 1 1 2 0 0 1 0 0 0 0 0 8 1 1058.4855 P50914 P50914 104 111 RPL14 60S ribosomal protein L14 yes yes 2 0.0016363 138.83 By MS/MS 6.67 0.471 1 2 3 21612000 0 21612000 0 9847 884 10352 42088;42089;42090 35014;35015 35015 2 0 10694000 0 MTDQEAIQDLWQWR KVEAKFINYVKNCFRMTDQEAIQDLWQWRK RMTDQEAIQDLWQWRKSL____________ R M T W R K 1 1 0 2 0 3 1 0 0 1 1 0 1 0 0 0 1 2 0 0 0 0 14 0 1818.8359 P06748 P06748 278 291 NPM1 Nucleophosmin yes yes 2;3 1.8082E-222 315.2 By matching By MS/MS By MS/MS 5.14 2.03 2 2 2 3 4 9 3 2 1 1 6 21 1105000000 307310 68562000 1036100000 9848 449 10353;10354 42091;42092;42093;42094;42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106;42107;42108;42109;42110;42111;42112;42113;42114;42115;42116;42117;42118 35016;35017;35018;35019;35020;35021;35022;35023;35024;35025;35026;35027;35028;35029;35030;35031;35032;35033;35034;35035;35036;35037;35038;35039;35040;35041 35036 169 25 354570 23542000 157070000 MTDQEAIQDLWQWRK KVEAKFINYVKNCFRMTDQEAIQDLWQWRK MTDQEAIQDLWQWRKSL_____________ R M T R K S 1 1 0 2 0 3 1 0 0 1 1 1 1 0 0 0 1 2 0 0 0 0 15 1 1946.9309 P06748 P06748 278 292 NPM1 Nucleophosmin yes yes 3 0.00087549 83.499 By MS/MS 6 0 1 1 8633300 0 8633300 0 9849 449 10355 42119 35042 35042 1 0 2988600 0 MTDVFEGSIIR VYTWATGATFAHICKMTDVFEGSIIRCMRR HICKMTDVFEGSIIRCMRRLEELLRQMCQA K M T I R C 0 1 0 1 0 0 1 1 0 2 0 0 1 1 0 1 1 0 0 1 0 0 11 0 1266.6278 P42285 P42285 985 995 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 1.641E-42 166.61 By MS/MS 2 0 1 1 0 0 0 0 9850 800 10356 42120 35043 35043 1 0 0 0 MTENSTSAPAAKPK ______________________________ ______________________________ - M T P K R 3 0 1 0 0 0 1 0 0 0 0 2 1 0 2 2 2 0 0 0 0 0 14 1 1431.7028 P07305 P07305 1 14 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.00015269 127.87 By matching By MS/MS 6.33 0.471 2 1 1 2 24860000 0 5569800 19290000 9851 457 10357 42121;42122;42123 35044;35045 35044 2 0 1928100 2988400 MTEWETAAPAVAETPDIK ______________________________ WETAAPAVAETPDIKLFGKWSTDDVQINDI - M T I K L 4 0 0 1 0 0 3 0 0 1 0 1 1 0 2 0 3 1 0 1 0 0 18 0 1958.9295 P46782 P46782 1 18 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2;3 1.2876E-09 155.08 By MS/MS By MS/MS 7 0 5 1 4 128210000 0 2059600 126150000 9852 832 10358;10359 42124;42125;42126;42127;42128 35046;35047;35048;35049;35050 35047 411 5 0 1182700 22384000 MTFSEHPYNNLR EKIWPGYSELPAVKKMTFSEHPYNNLRKRF VKKMTFSEHPYNNLRKRFGALLSDQGFDLM K M T L R K 0 1 2 0 0 0 1 0 1 0 1 0 1 1 1 1 1 0 1 0 0 0 12 0 1507.6878 P21127;Q9UQ88 P21127 674 685 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2;3 0.00012327 138.08 By matching By MS/MS 2.25 0.433 3 1 1 3 41868000 0 2172700 39696000 9853 620 10360 42129;42130;42131;42132 35051;35052;35053 35051 3 0 978400 8812400 MTGFELTEGVK EYGGREMQDLGGGERMTGFELTEGVKTSGM GGERMTGFELTEGVKTSGMPEICQEYSGTL R M T V K T 0 0 0 0 0 0 2 2 0 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1210.5904 Q02413 Q02413 651 661 DSG1 Desmoglein-1 yes yes 2 0.00057501 118.71 By MS/MS By matching 4 3.56 1 1 1 2 1 20725000 19145000 0 1580100 9854 1146 10361;10362 42133;42134;42135 35054;35055 35055 548 2 12422000 0 357060 MTGHQALINQVLFSPDSR LFLWSPAEDKKPLTRMTGHQALINQVLFSP HQALINQVLFSPDSRIVASASFDKSIKLWD R M T S R I 1 1 1 1 0 2 0 1 1 1 2 0 1 1 1 2 1 0 0 1 0 0 18 0 2013.0102 Q9NVX2 Q9NVX2 368 385 NLE1 Notchless protein homolog 1 yes yes 3 6.2522E-06 100.45 By MS/MS By matching 4.67 0.471 1 2 2 1 15618000 0 12067000 3551900 9855 2073 10363 42136;42137;42138 35056;35057 35056 2 0 3595500 495420 MTHNLLLNYGLYR YYYGQGHPMKPHRIRMTHNLLLNYGLYRKM IRMTHNLLLNYGLYRKMEIYRPHKANAEEM R M T Y R K 0 1 2 0 0 0 0 1 1 0 4 0 1 0 0 0 1 0 2 0 0 0 13 0 1606.829 Q13547;Q92769 Q13547 37 49 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 2;3 3.4577E-17 190.24 By matching By MS/MS By MS/MS 4.54 1.15 2 6 2 2 1 1 5 7 165510000 1038300 57742000 106730000 9856 1257;1721 10364;10365 42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151 35058;35059;35060;35061;35062;35063;35064;35065;35066 35064 580 8 810090 19289000 17870000 MTILQTYFR RGSCSTEVEKETQEKMTILQTYFRQNRDEV KETQEKMTILQTYFRQNRDEVLDNLLAFVC K M T F R Q 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 2 0 1 0 0 0 9 0 1171.606 O75348 O75348 81 89 ATP6V1G1 V-type proton ATPase subunit G 1 yes yes 2 3.7603E-53 218.79 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 11976000 0 3701700 8274400 9857 251 10366 42152;42153;42154;42155 35067;35068;35069 35069 3 0 2143300 2088500 MTISQQEFGR IATTGTEDSDDALLKMTISQQEFGRTGLPD DALLKMTISQQEFGRTGLPDLSSMTEEEQI K M T G R T 0 1 0 0 0 2 1 1 0 1 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1195.5656 P55036 P55036 263 272 PSMD4 26S proteasome non-ATPase regulatory subunit 4 yes yes 2 0.0055831 96.668 By MS/MS 5 0 1 1 2901700 0 2901700 0 9858 934 10367 42156 35070 35070 1 0 747960 0 MTLDDFR TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN LLDIDNTRMTLDDFRIKFEMEQNLRQGVDA R M T F R I 0 1 0 2 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 7 0 896.4062 P35527;CON__P35527 P35527 234 240 KRT9 Keratin, type I cytoskeletal 9 yes no 2 6.9932E-08 172.39 By MS/MS By MS/MS By MS/MS 5.05 2.81 8 3 7 8 7 4 5 5 3 5 18 13 24 5706000000 3822000000 151560000 1732500000 + 9859 750 10368;10369 42157;42158;42159;42160;42161;42162;42163;42164;42165;42166;42167;42168;42169;42170;42171;42172;42173;42174;42175;42176;42177;42178;42179;42180;42181;42182;42183;42184;42185;42186;42187;42188;42189;42190;42191;42192;42193;42194;42195;42196;42197;42198;42199;42200;42201;42202;42203;42204;42205;42206;42207;42208;42209;42210;42211 35071;35072;35073;35074;35075;35076;35077;35078;35079;35080;35081;35082;35083;35084;35085;35086;35087;35088;35089;35090;35091;35092;35093;35094;35095;35096;35097;35098;35099;35100;35101;35102;35103;35104;35105;35106;35107;35108;35109;35110;35111;35112;35113;35114;35115;35116;35117 35111 337 47 3458900000 64429000 481680000 MTLVASEDYGDTLAAIQGLLK FVANVEEEEAWINEKMTLVASEDYGDTLAA EDYGDTLAAIQGLLKKHEAFETDFTVHKDR K M T L K K 3 0 0 2 0 1 1 2 0 1 4 1 1 0 0 1 2 0 1 1 0 0 21 0 2208.1348 Q13813 Q13813 1890 1910 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 2.8396E-46 213.82 By MS/MS 1.33 0.471 2 1 3 18199000 0 0 18199000 9860 1268 10370 42212;42213;42214 35118;35119;35120 35118 3 0 0 3954900 MTMLLLYHSTMSSK SAQKVLEGSELELAKMTMLLLYHSTMSSKS KMTMLLLYHSTMSSKSPRDWEQFEYKIQAE K M T S K S 0 0 0 0 0 0 0 0 1 0 3 1 3 0 0 3 2 0 1 0 0 0 14 0 1641.7929 Q14980 Q14980 98 111 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00051994 119.45 By MS/MS 1 0 1 1 6591600 0 0 6591600 9861 1327 10371 42215 35121 35121 1 0 0 1420300 MTPFPATSAAPEPHPSTSTAQPVTPKPTSQATR PFHPKPKIRTRKSSRMTPFPATSAAPEPHP TAQPVTPKPTSQATRSRTNRSSVKTPEPVV R M T T R S 5 1 0 0 0 2 1 0 1 0 0 1 1 1 8 4 7 0 0 1 0 0 33 1 3388.6722 Q14676 Q14676 1115 1147 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 4 1.1855E-13 72.842 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 69232000 0 11326000 57907000 9862 1310 10372 42216;42217;42218 35122;35123;35124 35122 3 0 5535700 12656000 MTPPIKDLLPR LGALKAIVNVIGMHKMTPPIKDLLPRLTPI GMHKMTPPIKDLLPRLTPILKNRHEKVQEN K M T P R L 0 1 0 1 0 0 0 0 0 1 2 1 1 0 3 0 1 0 0 0 0 0 11 1 1279.7322 O75533 O75533 1009 1019 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.021365 65.395 By MS/MS 2 0 1 1 5665400 0 5665400 0 9863 270 10373 42219 35125;35126 35125 2 0 2551200 0 MTPSYEIR GDVKNFLYAWCGKRKMTPSYEIRAVGNKNR AWCGKRKMTPSYEIRAVGNKNRQKFMCEVQ K M T I R A 0 1 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 0 0 0 8 0 995.47462 Q08211 Q08211 17 24 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0009928 121.99 By matching By MS/MS By MS/MS 1.86 0.639 2 4 1 1 3 3 78590000 6797900 32594000 39198000 9864 1182 10374;10375 42220;42221;42222;42223;42224;42225;42226 35127;35128;35129;35130;35131 35127 564 4 8190600 14984000 8442900 MTQDRPLLAVQEALK ______________________________ MTQDRPLLAVQEALKKCFPVVEEQQGLWQS - M T L K K 2 1 0 1 0 2 1 0 0 0 3 1 1 0 1 0 1 0 0 1 0 0 15 1 1711.9291 Q9NX04 Q9NX04 1 15 C1orf109 Uncharacterized protein C1orf109 yes yes 2 0.0051134 73.848 By matching By MS/MS 6.67 0.471 1 2 2 1 2648800 938380 0 1710400 9865 2081 10376 42227;42228;42229 35132 35132 1 1708500 0 303510 MTQIMFETFNTPAMYVAIQAVLSLYASGR LLTEAPLNPKANREKMTQIMFETFNTPAMY YVAIQAVLSLYASGRTTGIVMDSGDGVTHT K M T G R T 4 1 1 0 0 2 1 1 0 2 2 0 3 2 1 2 3 0 2 2 0 0 29 0 3252.6021 P60709;P63261 P60709 119 147 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3 2.5192E-27 117.03 By MS/MS 5 0 1 1 8763800 0 0 8763800 9866 966;1069 10377 42230 35133 35133 1 0 0 1222400 MTQLVLPGMVER VIKKMININILSVCKMTQLVLPGMVERSKG VCKMTQLVLPGMVERSKGAILNISSGSGML K M T E R S 0 1 0 0 0 1 1 1 0 0 2 0 2 0 1 0 1 0 0 2 0 0 12 0 1372.7207 Q53GQ0 Q53GQ0 168 179 HSD17B12 Very-long-chain 3-oxoacyl-CoA reductase yes yes 2 0.0025256 108.7 By MS/MS 7.33 1.25 1 1 1 3 14130000 0 0 14130000 9867 1424 10378 42231;42232;42233 35134;35135 35135 2 0 0 2586900 MTQNPNYYNLQGISHR QDAVDYLTWTFLYRRMTQNPNYYNLQGISH TQNPNYYNLQGISHRHLSDHLSELVEQTLS R M T H R H 0 1 3 0 0 2 0 1 1 1 1 0 1 0 1 1 1 0 2 0 0 0 16 0 1934.9057 O75643 O75643 1764 1779 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 9.8345E-61 238.2 By MS/MS By MS/MS 1.33 0.471 6 3 4 5 254410000 0 86323000 168080000 9868 277 10379;10380 42234;42235;42236;42237;42238;42239;42240;42241;42242 35136;35137;35138;35139;35140;35141;35142;35143;35144 35143 111 9 0 41983000 36330000 MTVNVQPFR M T F R 0 1 1 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 0 2 0 0 9 0 1090.5593 REV__P54802 yes yes 2 0.0032729 100.45 By MS/MS 4.5 0.5 2 2 4 34942000 34942000 0 0 + 9869 2330 10381 42243;42244;42245;42246 35145;35146 35145 2 27446000 0 0 MVADLVENSYSISVPIFK GPKNEVEKCTKYMQKMVADLVENSYSISVP DLVENSYSISVPIFKQFHKNIIGKGGANIK K M V F K Q 1 0 1 1 0 0 1 0 0 2 1 1 1 1 1 3 0 0 1 3 0 0 18 0 2011.0336 Q00341 Q00341 573 590 HDLBP Vigilin yes yes 2 0.00071563 93.011 By MS/MS 2 0 1 1 2079300 0 2079300 0 9870 1122 10382 42247 35147 35147 1 0 936330 0 MVDMMDLPR ______________________________ ______________________________ - M V P R S 0 1 0 2 0 0 0 0 0 0 1 0 3 0 1 0 0 0 0 1 0 0 9 0 1106.4923 P35244 P35244 1 9 RPA3 Replication protein A 14 kDa subunit yes yes 2 0.011387 79.906 By MS/MS 9 0 1 1 5144000 0 0 5144000 9871 743 10383 42248 35148 35148 1 0 0 1643200 MVDPEKPQLGMIDR CMEKIEKGQVRLSKKMVDPEKPQLGMIDRW KMVDPEKPQLGMIDRWYHPGCFVKNREELG K M V D R W 0 1 0 2 0 1 1 1 0 1 1 1 2 0 2 0 0 0 0 1 0 0 14 1 1627.8062 P09874 P09874 143 156 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00083157 155.48 By MS/MS By MS/MS 2.84 1.69 4 7 2 3 1 1 1 5 14 979320000 0 87976000 891350000 9872 492 10384;10385 42249;42250;42251;42252;42253;42254;42255;42256;42257;42258;42259;42260;42261;42262;42263;42264;42265;42266;42267 35149;35150;35151;35152;35153;35154;35155;35156;35157;35158;35159;35160;35161 35156 206 13 0 39725000 195550000 MVDVVEKEDVNEAIR LLAILRLSTALARLRMVDVVEKEDVNEAIR MVDVVEKEDVNEAIRLMEMSKDSLLGDKGQ R M V I R L 1 1 1 2 0 0 3 0 0 1 0 1 1 0 0 0 0 0 0 4 0 0 15 1 1744.8665 P33993 P33993 621 635 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.022486 53.169 By MS/MS 3 0 1 1 2781200 0 2781200 0 9873 733 10386 42268 35162 35162 1 0 1185600 0 MVDYYEVLGVQR ______________________________ ______________________________ - M V Q R H 0 1 0 1 0 1 1 1 0 0 1 0 1 0 0 0 0 0 2 3 0 0 12 0 1470.7177 O75190 O75190 1 12 DNAJB6 DnaJ homolog subfamily B member 6 yes yes 2 0.043 76.465 By matching By MS/MS 6.67 0.471 1 2 2 1 4895500 845930 0 4049500 9874 247 10387 42269;42270;42271 35163 35163 0 1483700 0 718570 MVEADRPGK ______________________________ ______________________________ - M V G K L 1 1 0 1 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 1 0 0 9 1 1001.4964 P38159;O75526;Q96E39 P38159 1 9 RBMX;RBMXL2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA binding motif protein, X-linked-like-1 no no 2 0.015325 63.673 By MS/MS 5 0 1 1 0 0 0 0 9875 771;1772 10388 42272 35164 35164 1 0 0 0 MVEEHMEQQKENMEHLK ATLEDEAQENKSKMKMVEEHMEQQKENMEH EEHMEQQKENMEHLKSLKIEAENKYDAIKF K M V L K S 0 0 1 0 0 2 5 0 2 0 1 2 3 0 0 0 0 0 0 1 0 0 17 1 2168.9653 Q96SB8 Q96SB8 754 770 SMC6 Structural maintenance of chromosomes protein 6 yes yes 4 0.038636 37.583 By MS/MS 2 0 1 1 4628200 0 0 4628200 9876 1833 10389 42273 35165 35165 1 0 0 1045900 MVEGYQGLR EDMTAKEKLLLWSQRMVEGYQGLRCDNFTS LLWSQRMVEGYQGLRCDNFTSSWRDGRLFN R M V L R C 0 1 0 0 0 1 1 2 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1051.5121 Q15149 Q15149 308 316 PLEC Plectin yes yes 2 0.0053104 96.492 By MS/MS 1 0 1 1 14474000 0 14474000 0 9877 1348 10390 42274 35166 35166 1 0 7074800 0 MVFINNIALAQIK QKMLNGLEDSIGLSKMVFINNIALAQIKNN SKMVFINNIALAQIKNNNIDAAIENIENML K M V I K N 2 0 2 0 0 1 0 0 0 3 1 1 1 1 0 0 0 0 0 1 0 0 13 0 1473.8378 P42704 P42704 1177 1189 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0074332 93.598 By MS/MS By MS/MS 2 0 2 1 1 12241000 0 3031800 9209500 9878 808 10391 42275;42276 35167;35168 35168 2 0 1365300 2081200 MVGDVTGAQAYASTAK GFIAFAYSVKSRDRKMVGDVTGAQAYASTA VGDVTGAQAYASTAKCLNIWALILGILMTI K M V A K C 4 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 1 2 0 0 16 0 1568.7505 P13164;Q01629;Q01628 P13164 68 83 IFITM1;IFITM2;IFITM3 Interferon-induced transmembrane protein 1;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 3 yes no 2 1.179E-08 171.05 By MS/MS By MS/MS By MS/MS 9.62 0.484 3 5 2 2 4 70179000 6049400 6491100 57638000 9879 544 10392;10393 42277;42278;42279;42280;42281;42282;42283;42284 35169;35170;35171;35172;35173;35174 35172 244 6 6089200 32840000 90870000 MVGFIIGR HQRTVITEEFKVPDKMVGFIIGRGGEQISR EFKVPDKMVGFIIGRGGEQISRIQAESGCK K M V G R G 0 1 0 0 0 0 0 2 0 2 0 0 1 1 0 0 0 0 0 1 0 0 8 0 891.50004 Q96I24 Q96I24 88 95 FUBP3 Far upstream element-binding protein 3 yes yes 2 0.0033897 105.22 By MS/MS 3.8 0.748 2 2 1 5 37352000 0 37352000 0 9880 1797 10394;10395 42285;42286;42287;42288;42289 35175;35176;35177;35178 35176 668 4 0 12956000 0 MVGQLSEGAIAAIMQK ______________________________ VGQLSEGAIAAIMQKGDTNIKPILQVINIR - M V Q K G 3 0 0 0 0 2 1 2 0 2 1 1 2 0 0 1 0 0 0 1 0 0 16 0 1645.8531 P27694 P27694 1 16 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2;3 0.0034781 76.655 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 3150600 0 2615800 534780 9881 679 10396 42290;42291;42292 35179;35180 35179 2 0 975320 103720 MVGVPAALDMMLTGR LGALPGAGGTQRLPKMVGVPAALDMMLTGR MVGVPAALDMMLTGRSIRADRAKKMGLVDQ K M V G R S 2 1 0 1 0 0 0 2 0 0 2 0 3 0 1 0 1 0 0 2 0 0 15 0 1560.7826 P40939 P40939 191 205 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2;3 9.0223E-05 111.94 By matching By MS/MS By MS/MS 3 0 7 1 3 3 46548000 698660 16586000 29263000 9882 789 10397;10398 42293;42294;42295;42296;42297;42298;42299 35181;35182;35183;35184;35185;35186 35185 391 6 806090 7070500 5675700 MVHIDEEMGPK RSTFNDVEKMAAHMRMVHIDEEMGPKTDST AHMRMVHIDEEMGPKTDSTLSFDLTLQQGS R M V P K T 0 0 0 1 0 0 2 1 1 1 0 1 2 0 1 0 0 0 0 1 0 0 11 0 1284.5842 Q9H2P0 Q9H2P0 533 543 ADNP Activity-dependent neuroprotector homeobox protein yes yes 3 0.051041 46.068 By MS/MS 2 0.816 1 1 1 3 13633000 0 0 13633000 9883 1975 10399 42300;42301;42302 35187 35187 1 0 0 2995100 MVIITGPPEAQFK SIKIAPPETPDSKVRMVIITGPPEAQFKAQ VRMVIITGPPEAQFKAQGRIYGKLKEENFF R M V F K A 1 0 0 0 0 1 1 1 0 2 0 1 1 1 2 0 1 0 0 1 0 0 13 0 1429.7639 Q9NZI8;O00425;Q9Y6M1 Q9NZI8 453 465 IGF2BP1;IGF2BP3;IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 1;Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2 no no 2;3 7.0412E-27 147.75 By MS/MS By MS/MS By MS/MS 3.86 1.73 1 1 6 2 1 1 2 1 5 8 644100000 8755300 306290000 329050000 9884 2104;121;2315 10400;10401 42303;42304;42305;42306;42307;42308;42309;42310;42311;42312;42313;42314;42315;42316 35188;35189;35190;35191;35192;35193;35194;35195;35196;35197;35198;35199;35200;35201;35202 35200 66 15 10102000 138230000 61519000 MVIPALIQSDSGDSIEVSR LDDTYSFQVINKTVKMVIPALIQSDSGDSI ALIQSDSGDSIEVSRNVEEIVVKIISVFVD K M V S R N 1 1 0 2 0 1 1 1 0 3 1 0 1 0 1 4 0 0 0 2 0 0 19 0 2016.0198 Q9H583 Q9H583 1352 1370 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 1.4209E-52 226.59 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 16433000 0 3566300 12867000 9885 1984 10402 42317;42318;42319 35203;35204;35205 35204 3 0 1743100 2794000 MVLDHLVIQR KGSVEEDILERAKKKMVLDHLVIQRMDTTG RAKKKMVLDHLVIQRMDTTGKTVLHTGSAP K M V Q R M 0 1 0 1 0 1 0 0 1 1 2 0 1 0 0 0 0 0 0 2 0 0 10 0 1222.6856 O14647;O14646 O14646 930 939 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2;3 0.0015785 99.802 By MS/MS 1 0 2 2 35418000 0 0 35418000 9886 141;142 10403 42320;42321 35206;35207 35207 2 0 0 7631400 MVLNESLK GIDRLRLDKFYMLMRMVLNESLKVLKMQGW KFYMLMRMVLNESLKVLKMQGWEERQIEEL R M V L K V 0 0 1 0 0 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 0 8 0 932.5001 P56182 P56182 124 131 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 0.020722 83.753 By MS/MS 4 0 1 1 20625000 0 20625000 0 9887 948 10404 42322 35208 35208 1 0 6844600 0 MVMEKPSPLLVGR ______________________________ ______________________________ - M V G R E 0 1 0 0 0 0 1 1 0 0 2 1 2 0 2 1 0 0 0 2 0 0 13 1 1455.7942 Q9UN86;Q13283 Q13283 1 13 G3BP2;G3BP1 Ras GTPase-activating protein-binding protein 2;Ras GTPase-activating protein-binding protein 1 no no 2 0.00016737 123.42 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 48767000 3899800 14082000 30785000 9888 1236;2203 10405 42323;42324;42325;42326 35209;35210;35211 35209 3 3042500 4673400 5401400 MVMETIEK RIVDDLKDEAEQYRKMVMETIEKIMGNLGA EAEQYRKMVMETIEKIMGNLGAADIDHKLE K M V E K I 0 0 0 0 0 0 2 0 0 1 0 1 2 0 0 0 1 0 0 1 0 0 8 0 979.47184 O75533 O75533 867 874 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.048786 73.26 By MS/MS 1.5 0.5 1 1 2 24240000 0 0 24240000 9889 270 10406 42327;42328 35212;35213 35212 2 0 0 5378900 MVMIQDGPLPTGADKPLR GGETIKQLQERTGVKMVMIQDGPLPTGADK IQDGPLPTGADKPLRITGDAFKVQQAREMV K M V L R I 1 1 0 2 0 1 0 2 0 1 2 1 2 0 3 0 1 0 0 1 0 0 18 1 1938.0067 Q96I24 Q96I24 196 213 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 6.55E-16 182.1 By matching By MS/MS By MS/MS 3.38 0.836 2 5 5 1 1 9 3 253710000 7372400 180190000 66148000 9890 1797 10407;10408;10409 42329;42330;42331;42332;42333;42334;42335;42336;42337;42338;42339;42340;42341 35214;35215;35216;35217;35218;35219;35220;35221;35222 35217 669;670 9 8882800 62338000 12665000 MVMIQDGPQNTGADKPLR GGETIKQLQERAGVKMVMIQDGPQNTGADK IQDGPQNTGADKPLRITGDPYKVQQAKEMV K M V L R I 1 1 1 2 0 2 0 2 0 1 1 1 2 0 2 0 1 0 0 1 0 0 18 1 1969.9714 Q96AE4 Q96AE4 219 236 FUBP1 Far upstream element-binding protein 1 yes yes 3 2.7843E-09 149.22 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 2 4 55997000 0 26610000 29386000 9891 1750 10410 42342;42343;42344;42345;42346;42347 35223;35224;35225 35225 3 0 10448000 5708900 MVNDAEPDTK SSNSESKKKKKKKRKMVNDAEPDTKKAKTE KKKRKMVNDAEPDTKKAKTENKGKSEEESA K M V T K K 1 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 0 0 1 0 0 10 0 1118.4914 Q9NVP1 Q9NVP1 117 126 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.00077538 113.71 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 16089000 0 4728300 11360000 9892 2069 10411 42348;42349;42350 35226;35227 35226 2 0 2015700 2194900 MVNDAEPDTKK SSNSESKKKKKKKRKMVNDAEPDTKKAKTE KKRKMVNDAEPDTKKAKTENKGKSEEESAE K M V K K A 1 0 1 2 0 0 1 0 0 0 0 2 1 0 1 0 1 0 0 1 0 0 11 1 1246.5864 Q9NVP1 Q9NVP1 117 127 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3 0.021492 83.948 By MS/MS By MS/MS 3.33 0.943 1 3 1 1 4 2 6830300 0 3838800 2991600 9893 2069 10412 42351;42352;42353;42354;42355;42356 35228;35229;35230 35230 3 0 1612200 580220 MVNHFIAEFK TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK DFDNRMVNHFIAEFKRKHKKDISENKRAVR R M V F K R 1 0 1 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 1 0 0 10 0 1234.6169 P11142 P11142 237 246 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 1.6479E-13 159.79 By matching By MS/MS By MS/MS 3.5 1.74 1 4 6 3 3 1 1 9 8 453320000 7678200 142860000 302780000 9894 517 10413;10414 42357;42358;42359;42360;42361;42362;42363;42364;42365;42366;42367;42368;42369;42370;42371;42372;42373;42374 35231;35232;35233;35234;35235;35236;35237;35238;35239;35240;35241;35242;35243;35244;35245;35246;35247;35248;35249 35245 218 19 9251300 60073000 59897000 MVNHFIAEFKR TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK FDNRMVNHFIAEFKRKHKKDISENKRAVRR R M V K R K 1 1 1 0 0 0 1 0 1 1 0 1 1 2 0 0 0 0 0 1 0 0 11 1 1390.718 P11142 P11142 237 247 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 0.00072382 103.43 By MS/MS 3 0.707 1 2 1 4 23729000 0 23729000 0 9895 517 10415 42375;42376;42377;42378 35250;35251 35250 2 0 10017000 0 MVPAGMGAGLER RMGPAIERMGLSMERMVPAGMGAGLERMGP MERMVPAGMGAGLERMGPVMDRMATGLERM R M V E R M 2 1 0 0 0 0 1 3 0 0 1 0 2 0 1 0 0 0 0 1 0 0 12 0 1187.5791 P52272 P52272 532 543 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 6.9858E-06 159.79 By matching By MS/MS By MS/MS 3.86 2.1 3 2 6 4 1 2 2 1 3 10 8 477010000 11073000 213920000 252020000 9896 902 10416;10417 42379;42380;42381;42382;42383;42384;42385;42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398;42399 35252;35253;35254;35255;35256;35257;35258;35259;35260;35261;35262;35263;35264;35265;35266;35267 35266 442 15 12246000 90905000 47933000 MVPFQVPEILR SGFAYHLFPRSRLEKMVPFQVPEILRTPLE RLEKMVPFQVPEILRTPLENLVLQAKIHMP K M V L R T 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 0 0 0 0 2 0 0 11 0 1327.7322 Q7L2E3 Q7L2E3 803 813 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.00032718 122.13 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 25504000 0 12891000 12614000 9897 1522 10418;10419 42400;42401;42402;42403 35268;35269;35270;35271 35271 646 4 0 5804900 2813900 MVQLRPR ______________________________ ______________________________ - M V P R A 0 2 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 7 1 898.51709 Q9UMY1 Q9UMY1 1 7 NOL7 Nucleolar protein 7 yes yes 2 0.013377 88.201 By MS/MS By MS/MS 6 0 2 1 1 2936600 0 2936600 0 9898 2200 10420 42404;42405 35272;35273 35273 2 0 1016500 0 MVQQLQEDVDMEDAP IRAPLAGKGKQLEEKMVQQLQEDVDMEDAP MVQQLQEDVDMEDAP_______________ K M V A P - 1 0 0 3 0 3 2 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 15 0 1746.7441 Q9UHA3 Q9UHA3 149 163 RSL24D1 Probable ribosome biogenesis protein RLP24 yes yes 2 0.0088516 77.662 By MS/MS 7 0 2 2 31827000 0 0 31827000 9899 2149 10421;10422 42406;42407 35274;35275 35275 703 2 0 0 5647400 MVSAEISENR LEDSVLKGMQAASSKMVSAEISENRKRQWP AASSKMVSAEISENRKRQWPTKSQTDRGAS K M V N R K 1 1 1 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 0 1 0 0 10 0 1134.5339 Q6IQ49 Q6IQ49 182 191 SDE2 Protein SDE2 homolog yes yes 2 0.0082446 90.906 By matching By MS/MS 3.5 0.5 1 1 1 1 3565200 0 1373500 2191700 9900 1479 10423 42408;42409 35276 35276 1 0 585540 357980 MVSAVLNGMLDQSFR LAVLELMQSSVDNTKMVSAVLNGMLDQSFR MVSAVLNGMLDQSFRERANQKHQGLKLATT K M V F R E 1 1 1 1 0 1 0 1 0 0 2 0 2 1 0 2 0 0 0 2 0 0 15 0 1666.8171 P78527 P78527 1592 1606 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 5.208E-05 128.96 By MS/MS 1 0 1 1 2778900 0 0 2778900 9901 1089 10424 42410 35277 35277 1 0 0 598770 MVSAVLQFGNIALK RVLGFSHEEIISMLRMVSAVLQFGNIALKR RMVSAVLQFGNIALKRERNTDQATMPDNTA R M V L K R 2 0 1 0 0 1 0 1 0 1 2 1 1 1 0 1 0 0 0 2 0 0 14 0 1489.8327 Q7Z406 Q7Z406 368 381 MYH14 Myosin-14 yes yes 2 0.0023059 100.48 By MS/MS 1 0 1 1 1211100 0 1211100 0 9902 1531 10425 42411 35278 35278 1 0 591990 0 MVSDINNGWQHLEQAEK LRLSNRPAFMPSEGKMVSDINNGWQHLEQA SDINNGWQHLEQAEKGYEEWLLNEIRRLER K M V E K G 1 0 2 1 0 2 2 1 1 1 1 1 1 0 0 1 0 1 0 1 0 0 17 0 1997.9265 O43707 O43707 379 395 ACTN4 Alpha-actinin-4 yes yes 2;3 1.5925E-76 248.36 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 64305000 0 19246000 45058000 9903 210 10426 42412;42413;42414;42415;42416 35279;35280;35281 35281 3 0 8733100 10078000 MVSISNYPLSAALTCAK GAFAHGKVSVEYTEKMVSISNYPLSAALTC SISNYPLSAALTCAKLTTAFEEVWGVI___ K M V A K L 3 0 1 0 1 0 0 0 0 1 2 1 1 0 1 3 1 0 1 1 0 0 17 0 1824.9114 Q92979 Q92979 216 232 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 1.0111E-05 114.72 By matching By MS/MS 7 0 2 1 1 12319000 0 1238100 11081000 9904 1736 10427 42417;42418 35282 35282 1 0 710950 1966300 MVSMPQTTAGTILDGVNVGR KEDPRTDVKAYDVTRMVSMPQTTAGTILDG QTTAGTILDGVNVGRGYGLVEGHDRRQFEI R M V G R G 1 1 1 1 0 1 0 3 0 1 1 0 2 0 1 1 3 0 0 3 0 0 20 0 2046.0238 O95425 O95425 1715 1734 SVIL Supervillin yes yes 2 2.9176E-13 123.38 By MS/MS 1.5 0.5 1 1 2 10944000 0 10944000 0 9905 325 10428 42419;42420 35283;35284;35285 35285 3 0 5269300 0 MVVESAYEVIK MGTDNDSENWKEVHKMVVESAYEVIKLKGY EVHKMVVESAYEVIKLKGYTNWAIGLSVAD K M V I K L 1 0 0 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 1 3 0 0 11 0 1266.653 P07195 P07195 234 244 LDHB L-lactate dehydrogenase B chain yes yes 2 0.065826 71.614 By matching By MS/MS 6 0 2 1 1 13502000 0 2562300 10940000 9906 452 10429 42421;42422 35286 35286 1 0 886990 1636700 MVVLSLPR EECRYKLYQEMFAWKMVVLSLPRIQSQRYQ QEMFAWKMVVLSLPRIQSQRYQVGVHYELT K M V P R I 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 1 0 0 0 2 0 0 8 0 913.54191 Q14204 Q14204 991 998 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 4.5364E-06 120.65 By MS/MS 1 0 1 1 0 0 0 0 9907 1292 10430 42423 35287 35287 1 0 0 0 MVVNEGSDGGQSVYHVHLHVLGGR GKKCAADLGLNKGYRMVVNEGSDGGQSVYH GQSVYHVHLHVLGGRQMHWPPG________ R M V G R Q 0 1 1 1 0 1 1 5 3 0 2 0 1 0 0 2 0 0 1 5 0 0 24 0 2546.2448 P49773 P49773 96 119 HINT1 Histidine triad nucleotide-binding protein 1 yes yes 4;5 2.4181E-08 87.772 By MS/MS 9 0 2 2 26271000 0 0 26271000 9908 869 10431 42424;42425 35288;35289 35288 2 0 0 8392000 MVVPVAALFTPLK FSWNVWPSSRLEATRMVVPVAALFTPLKER TRMVVPVAALFTPLKERPDLPPIQYEPVLC R M V L K E 2 0 0 0 0 0 0 0 0 0 2 1 1 1 2 0 1 0 0 3 0 0 13 0 1384.8152 Q15436 Q15436 34 46 SEC23A Protein transport protein Sec23A yes yes 2 0.0080518 91.855 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 5973000 0 1635000 4338100 9909 1368 10432 42426;42427;42428 35290;35291 35290 2 0 702570 841380 MVVSFNR DQIQEIVTGNPTVIKMVVSFNRGARGQNAL TGNPTVIKMVVSFNRGARGQNALRQILAPV K M V N R G 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 2 0 0 7 0 851.43236 P46940;Q13576 P46940 1054 1060 IQGAP1;IQGAP2 Ras GTPase-activating-like protein IQGAP1;Ras GTPase-activating-like protein IQGAP2 yes no 2 6.1053E-15 149.06 By MS/MS By MS/MS 2 0 2 1 1 14216000 0 14216000 0 9910 835 10433 42429;42430 35292;35293 35293 2 0 6401700 0 MWDLSSNQAIQIAQHDAPVK DGSKVFTASCDKTAKMWDLSSNQAIQIAQH SNQAIQIAQHDAPVKTIHWIKAPNYSCVMT K M W V K T 3 0 1 2 0 3 0 0 1 2 1 1 1 0 1 2 0 1 0 1 0 0 20 0 2251.1056 P78406 P78406 112 131 RAE1 mRNA export factor yes yes 2;3 5.0698E-17 166.04 By MS/MS 5 0 2 2 65833000 0 0 65833000 9911 1087 10434 42431;42432 35294;35295 35295 2 0 0 9182500 MWDPHNDPNAQGDAFK EKIERRQQEVETELKMWDPHNDPNAQGDAF WDPHNDPNAQGDAFKTLFVARVNYDTTESK K M W F K T 2 0 2 3 0 1 0 1 1 0 0 1 1 1 2 0 0 1 0 0 0 0 16 0 1841.7791 P08621 P08621 88 103 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2;3 3.2798E-05 147.96 By MS/MS By MS/MS 3.6 0.8 1 3 5 1 5 5 248460000 0 69348000 179110000 9912 474 10435;10436 42433;42434;42435;42436;42437;42438;42439;42440;42441;42442 35296;35297;35298;35299;35300;35301;35302 35296 183 7 0 23466000 30547000 MWEVLESTTQTK ETEAVVKEKLTGLHKMWEVLESTTQTKAQR LHKMWEVLESTTQTKAQRLFDANKAELFTQ K M W T K A 0 0 0 0 0 1 2 0 0 0 1 1 1 0 0 1 3 1 0 1 0 0 12 0 1451.6966 Q01082 Q01082 1361 1372 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 5.6623E-18 191.4 By MS/MS By MS/MS 1 0 2 1 1 28268000 0 8893100 19374000 9913 1128 10437 42443;42444 35303;35304 35303 2 0 4346800 4174500 MWNDLSEK RPELSESELTRLLARMWNDLSEKKKAKYKA LTRLLARMWNDLSEKKKAKYKAREAALKAQ R M W E K K 0 0 1 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 0 0 0 8 0 1021.4539 P17480 P17480 444 451 UBTF Nucleolar transcription factor 1 yes yes 2 0.011045 92.47 By matching By MS/MS 2.33 0.471 2 1 1 2 32759000 0 4682100 28077000 9914 584 10438 42445;42446;42447 35305;35306 35306 2 0 2108400 5726900 MWQSMCPLR LTDKTLNLCKMIDKRMWQSMCPLRQFRKLP KMIDKRMWQSMCPLRQFRKLPEEVVKKIEK R M W L R Q 0 1 0 0 1 1 0 0 0 0 1 0 2 0 1 1 0 1 0 0 0 0 9 0 1207.53 O75643 O75643 1122 1130 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00049838 124.83 By MS/MS 1 0 1 1 8604000 0 0 8604000 9915 277 10439 42448 35307 35307 1 0 0 1853900 MWVFSNLR EPGQQCLTTHAYLGKMWVFSNLRCGTPEEP THAYLGKMWVFSNLRCGTPEEPCQEAFNQT K M W L R C 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 1 0 0 8 0 1051.5273 O95867 O95867 57 64 LY6G6C Lymphocyte antigen 6 complex locus protein G6c yes yes 2 0.00492 101.69 By MS/MS 8.5 1.12 1 1 1 1 4 5108900 5108900 0 0 9916 346 10440 42449;42450;42451;42452 35308 35308 119 1 5347600 0 0 MWVQLLIPR KPEIRLLIEKCNTVKMWVQLLIPRIEDGNN KCNTVKMWVQLLIPRIEDGNNFGVSIQEET K M W P R I 0 1 0 0 0 1 0 0 0 1 2 0 1 0 1 0 0 1 0 1 0 0 9 0 1154.6634 P61289 P61289 138 146 PSME3 Proteasome activator complex subunit 3 yes yes 2 0.058981 68.915 By MS/MS 6 0 1 1 1127100 0 0 1127100 9917 990 10441 42453 35309 35309 1 0 0 168630 MYAALGDPK KTPVNKKNIEKMYERMYAALGDPKAPGLGA EKMYERMYAALGDPKAPGLGAFRRKFIQTF R M Y P K A 2 0 0 1 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 0 0 0 9 0 964.4688 P78527 P78527 3613 3621 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.046066 70.919 By MS/MS 1 0 1 1 0 0 0 0 9918 1089 10442 42454 35310 35310 1 0 0 0 MYEEHLK ADYESVNECMEGVCKMYEEHLKRMNPNSPS ECMEGVCKMYEEHLKRMNPNSPSITYDISQ K M Y L K R 0 0 0 0 0 0 2 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 7 0 948.4375 P84090 P84090 35 41 ERH Enhancer of rudimentary homolog yes yes 2 0.036428 86.866 By MS/MS 9 0 1 1 9470900 0 0 9470900 9919 1110 10443 42455 35311 35311 1 0 0 3025400 MYEEHLKR ADYESVNECMEGVCKMYEEHLKRMNPNSPS CMEGVCKMYEEHLKRMNPNSPSITYDISQL K M Y K R M 0 1 0 0 0 0 2 0 1 0 1 1 1 0 0 0 0 0 1 0 0 0 8 1 1104.5386 P84090 P84090 35 42 ERH Enhancer of rudimentary homolog yes yes 2 0.0014495 124.34 By MS/MS 9 0 1 1 8354800 0 0 8354800 9920 1110 10444 42456 35312 35312 1 0 0 2668900 MYIEEQDDQDGSSWK GLMYWYQLDQDHNVRMYIEEQDDQDGSSWK MYIEEQDDQDGSSWKCIVRNRNELAETLAL R M Y W K C 0 0 0 3 0 2 2 1 0 1 0 1 1 0 0 2 0 1 1 0 0 0 15 0 1829.7414 Q96T23 Q96T23 175 189 RSF1 Remodeling and spacing factor 1 yes yes 2 3.5851E-26 206.11 By MS/MS 1.5 0.5 1 1 2 11036000 0 0 11036000 9921 1837 10445 42457;42458 35313 35313 1 0 0 2419200 MYLGYEYVTAIR SAHGFLKVPPRMDAKMYLGYEYVTAIRNLR DAKMYLGYEYVTAIRNLREGTCPEAPTDEC K M Y I R N 1 1 0 0 0 0 1 1 0 1 1 0 1 0 0 0 1 0 3 1 0 0 12 0 1477.7275 P02787 P02787 332 343 TF Serotransferrin yes yes 2 0.0012859 114.97 By MS/MS 4 1 1 1 2 7586000 7586000 0 0 9922 399 10446 42459;42460 35314;35315 35314 2 8752600 0 0 MYLSLIAK NPKGVEWLWHSIVIRMYLSLIAKSVRNYTQ WHSIVIRMYLSLIAKSVRNYTQEASLGALQ R M Y A K S 1 0 0 0 0 0 0 0 0 1 2 1 1 0 0 1 0 0 1 0 0 0 8 0 937.53067 Q99959 Q99959 685 692 PKP2 Plakophilin-2 yes yes 2 0.03718 76.134 By matching By MS/MS 3 0 2 1 1 5770300 3372400 0 2398000 9923 1870 10447 42461;42462 35316 35316 1 3890900 0 465090 MYSDAFLNDSYLK EIRAICIEEIGIWMKMYSDAFLNDSYLKYV MKMYSDAFLNDSYLKYVGWTMHDKQGEVRL K M Y L K Y 1 0 1 2 0 0 0 0 0 0 2 1 1 1 0 2 0 0 2 0 0 0 13 0 1565.7072 Q8N3U4;Q8WVM7 Q8N3U4 318 330 STAG2;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.0083861 90.913 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 58410000 0 6142000 52268000 9924 1603 10448 42463;42464;42465;42466 35317;35318;35319 35317 3 0 2765800 11629000 MYSTDDGVQFHAFGR SDCDPDGPLMCHTTKMYSTDDGVQFHAFGR MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL K M Y G R V 1 1 0 2 0 1 0 2 1 0 0 0 1 2 0 1 1 0 1 1 0 0 15 0 1729.7519 Q15029 Q15029 481 495 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 2.2224E-45 218.49 By MS/MS By MS/MS 2.29 0.881 1 4 1 1 2 5 77369000 0 14362000 63007000 9925 1335 10449 42467;42468;42469;42470;42471;42472;42473 35320;35321;35322;35323 35323 4 0 6467400 13839000 MYSYPAR SFDLDYDFQRDYYDRMYSYPARVPPPPPIA FQRDYYDRMYSYPARVPPPPPIARAVVPSK R M Y A R V 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 2 0 0 0 7 0 886.40072 P07910 P07910 136 142 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2 0.0091427 122.15 By MS/MS By MS/MS By MS/MS 5.85 0.662 4 7 2 2 6 5 244770000 30825000 143350000 70595000 9926 467 10450;10451 42474;42475;42476;42477;42478;42479;42480;42481;42482;42483;42484;42485;42486 35324;35325;35326;35327;35328;35329;35330;35331;35332;35333 35327 181 10 39501000 49962000 10466000 MYVPALIFGQLLTSSNYDDDEK NNGKGIPVVEHKVEKMYVPALIFGQLLTSS FGQLLTSSNYDDDEKKVTGGRNGYGAKLCN K M Y E K K 1 0 1 3 0 1 1 1 0 1 3 1 1 1 1 2 1 0 2 1 0 0 22 0 2518.1938 P11388 P11388 135 156 TOP2A DNA topoisomerase 2-alpha yes yes 3 2.7768E-09 90.22 By MS/MS 1.5 0.5 1 1 2 6368900 0 0 6368900 9927 524 10452 42487;42488 35334 35334 1 0 0 1404100 MYVPALIFGQLLTSSNYDDDEKK NNGKGIPVVEHKVEKMYVPALIFGQLLTSS GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI K M Y K K V 1 0 1 3 0 1 1 1 0 1 3 2 1 1 1 2 1 0 2 1 0 0 23 1 2646.2887 P11388 P11388 135 157 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.0955E-29 182.22 By MS/MS 1.4 0.49 3 2 5 78180000 0 0 78180000 9928 524 10453;10454 42489;42490;42491;42492;42493 35335;35336;35337 35336 227 3 0 0 16956000 MYVPALIFGQLLTSSNYDDDEKKVTGGR NNGKGIPVVEHKVEKMYVPALIFGQLLTSS SSNYDDDEKKVTGGRNGYGAKLCNIFSTKF K M Y G R N 1 1 1 3 0 1 1 3 0 1 3 2 1 1 1 2 2 0 2 2 0 0 28 2 3116.5489 P11388 P11388 135 162 TOP2A DNA topoisomerase 2-alpha yes yes 4 4.5422E-21 106.63 By MS/MS 1 0 1 1 2732200 0 0 2732200 9929 524 10455 42494 35338 35338 1 0 0 588700 NAAALSQALR TVVIEHCTSURVYGRNAAALSQALRLEAPE RVYGRNAAALSQALRLEAPELPVKVNPTKP R N A L R L 4 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1013.5618 Q8IZQ5 Q8IZQ5 50 59 SELH Selenoprotein H yes yes 2 3.5299E-28 154.12 By MS/MS By MS/MS 9 0 2 1 1 4367700 0 4367700 0 9930 1597 10456 42495;42496 35339;35340 35340 2 0 3497500 0 NAAEAMLLQLGYK EVATGTGPNKKIAKKNAAEAMLLQLGYKAS KKNAAEAMLLQLGYKASTNLQDQLEKTGEN K N A Y K A 3 0 1 0 0 1 1 1 0 0 3 1 1 0 0 0 0 0 1 0 0 0 13 0 1420.7384 Q9NUL3 Q9NUL3 364 376 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 yes yes 2 0.00027536 131.28 By matching By MS/MS 3.67 0.471 1 2 2 1 5580000 2671300 2908800 0 9931 2060 10457 42497;42498;42499 35341 35341 1 2388900 965310 0 NAAENMLEILGFK HTAEGTGTNKKVAKRNAAENMLEILGFKVP KRNAAENMLEILGFKVPQAQPTKPALKSEE R N A F K V 2 0 2 0 0 0 2 1 0 1 2 1 1 1 0 0 0 0 0 0 0 0 13 0 1448.7334 O95793 O95793 343 355 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 0.00016964 150.04 By MS/MS By MS/MS 3.29 1.48 1 1 2 2 1 4 3 62608000 0 7422000 55186000 9932 341 10458 42500;42501;42502;42503;42504;42505;42506 35342;35343;35344 35343 3 0 2623900 9326700 NAAIAVLEELK FVGEGEGKSKKISKKNAAIAVLEELKKLPP ISKKNAAIAVLEELKKLPPLPAVERVKPRI K N A L K K 3 0 1 0 0 0 2 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1169.6656 O95793 O95793 240 250 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 0.010563 90.108 By MS/MS 3.5 0.5 1 1 2 6349800 0 0 6349800 9933 341 10459 42507;42508 35345 35345 1 0 0 1065800 NAAIAVLEELKK FVGEGEGKSKKISKKNAAIAVLEELKKLPP SKKNAAIAVLEELKKLPPLPAVERVKPRIK K N A K K L 3 0 1 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 12 1 1297.7606 O95793 O95793 240 251 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2;3 0.0042832 105.4 By MS/MS By MS/MS 4.14 0.99 2 3 1 1 4 3 54484000 0 34274000 20210000 9934 341 10460 42509;42510;42511;42512;42513;42514;42515 35346;35347;35348;35349 35349 4 0 11034000 3347000 NAALNTIVTVYNVHGDQVFK KEIAVHIGDRDNAVRNAALNTIVTVYNVHG TIVTVYNVHGDQVFKLIGNLSEKDMSMLEE R N A F K L 2 0 3 1 0 1 0 1 1 1 1 1 0 1 0 0 2 0 1 4 0 0 20 0 2202.1433 Q14008 Q14008 1384 1403 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 5.1105E-11 112.91 By MS/MS By MS/MS 1 0 2 1 1 125800000 0 11669000 114130000 9935 1279 10461 42516;42517 35350;35351 35351 2 0 5703600 24592000 NAAPPPSNTEAPPGETR FAIPMIHAVLQWQKRNAAPPPSNTEAPPGE APPPSNTEAPPGETRTEAGAETRSPGKAEA R N A T R T 3 1 2 0 0 0 2 1 0 0 0 0 0 0 5 1 2 0 0 0 0 0 17 0 1704.8067 Q9GZR7 Q9GZR7 262 278 DDX24 ATP-dependent RNA helicase DDX24 yes yes 2 0.033195 54.7 By MS/MS 2 0 1 1 0 0 0 0 9936 1952 10462 42518 35352 35352 1 0 0 0 NAAVVMAVAQLYWHISPK HRLLIRNTKPLLQSRNAAVVMAVAQLYWHI VVMAVAQLYWHISPKSEAGIISKSLVRLLR R N A P K S 4 0 1 0 0 1 0 0 1 1 1 1 1 0 1 1 0 1 1 3 0 0 18 0 1997.0557 O00203 O00203 312 329 AP3B1 AP-3 complex subunit beta-1 yes yes 3 0.00025962 82.482 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 51371000 7621700 7207300 36542000 9937 111 10463 42519;42520;42521;42522 35353;35354;35355 35355 3 7621700 3522800 7879700 NADGLIVASR QRKRHLEAAALLSERNADGLIVASRFHPTP LLSERNADGLIVASRFHPTPLLLSLLDFVA R N A S R F 2 1 1 1 0 0 0 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1014.5458 Q9UJA5 Q9UJA5 368 377 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 0.055671 71.349 By MS/MS 4 0 1 1 4226000 0 4226000 0 9938 2168 10464 42523 35356 35356 1 0 1402500 0 NADHSMNYQYR GPPSSYQSSQGGYGRNADHSMNYQYR____ GYGRNADHSMNYQYR_______________ R N A Y R - 1 1 2 1 0 1 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 0 11 0 1397.5782 Q12906 Q12906 884 894 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 2.2417E-13 176.38 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 21871000 0 17572000 4298400 9939 1211 10465 42524;42525;42526;42527;42528;42529 35357;35358;35359;35360;35361 35357 5 0 7913100 936280 NADIFNSDVVIVER GRQPLRSGPTHVSTRNADIFNSDVVIVERG RNADIFNSDVVIVERGKGDGVPERRKFGRM R N A E R G 1 1 2 2 0 0 1 0 0 2 0 0 0 1 0 1 0 0 0 3 0 0 14 0 1589.8049 Q13111 Q13111 529 542 CHAF1A Chromatin assembly factor 1 subunit A yes yes 2 1.1397E-11 182.08 By MS/MS 2 0 1 1 18833000 0 0 18833000 9940 1220 10466 42530 35362 35362 1 0 0 4255800 NADMQEELIASLEEQLK SVLPGPDGNINSPTRNADMQEELIASLEEQ DMQEELIASLEEQLKLSGEHSESSTPRPRS R N A L K L 2 0 1 1 0 2 4 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 17 0 1959.9459 Q7Z3K3 Q7Z3K3 1342 1358 POGZ Pogo transposable element with ZNF domain yes yes 3 0.001444 70.802 By MS/MS 1 0 1 1 588500 0 0 588500 9941 1530 10467 42531 35363 35363 1 0 0 126800 NADPILISLK GPEAALEAEEWFEGKNADPILISLKHGYIP WFEGKNADPILISLKHGYIPGKNRDLKVVK K N A L K H 1 0 1 1 0 0 0 0 0 2 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1082.6336 Q9ULV4 Q9ULV4 382 391 CORO1C Coronin-1C yes yes 2 0.051907 72.325 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 99134000 0 30414000 68720000 9942 2192 10468 42532;42533;42534;42535 35364;35365 35364 2 0 10093000 10395000 NADVELQQR KPTIQDVLRSDSQLRNADVELQQRAVEYLR SDSQLRNADVELQQRAVEYLRLSTVASTDI R N A Q R A 1 1 1 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1071.5309 O94973;O95782 O94973 570 578 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2 0.00040123 122.19 By MS/MS 2 0 1 1 3534600 0 3534600 0 9943 306;339 10469 42536 35366 35366 1 0 1591700 0 NAEPLINLDVNNPDFK DLVPDNSKTADNATKNAEPLINLDVNNPDF AEPLINLDVNNPDFKAGVMALANLLQIQRH K N A F K A 1 0 4 2 0 0 1 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 16 0 1811.9054 Q9Y224 Q9Y224 116 131 C14orf166 UPF0568 protein C14orf166 yes yes 2 4.0154E-13 183.37 By MS/MS By MS/MS 7 0 2 1 1 36054000 0 4632100 31422000 9944 2227 10470 42537;42538 35367;35368 35368 2 0 2659800 5575600 NAEQYKDQADKASTR KKLKDVLLQVDDERRNAEQYKDQADKASTR NAEQYKDQADKASTRLKQLKRQLEEAEEEA R N A T R L 3 1 1 2 0 2 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 15 2 1723.8125 P35579 P35579 1857 1871 MYH9 Myosin-9 yes yes 3 0.019525 56.872 By MS/MS 1.5 0.5 1 1 2 5884600 0 5884600 0 9945 752 10471 42539;42540 35369 35369 1 0 2836600 0 NAESNAELK RWPKKSAEFLLHMLKNAESNAELKGLDVDS LLHMLKNAESNAELKGLDVDSLVIEHIQVN K N A L K G 2 0 2 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 9 0 974.46689 P18621 P18621 97 105 RPL17 60S ribosomal protein L17 yes yes 2 0.00062856 128.38 By MS/MS By MS/MS 6.25 0.829 1 1 2 3 1 7047400 0 3958500 3088900 9946 597 10472 42541;42542;42543;42544 35370;35371;35372;35373;35374 35373 5 0 1925100 548110 NAFDLFK GRKEPKGLKTLKEIRNAFDLFKLTPEEKND LKTLKEIRNAFDLFKLTPEEKNDVSENNRK R N A F K L 1 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 7 0 853.4334 Q99549 Q99549 446 452 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2 0.065336 73.637 By MS/MS 2.5 0.5 1 1 2 1900800 0 1900800 0 9947 1849 10473 42545;42546 35375 35375 1 0 846420 0 NAGFTPQER AHEEIDLRNPKGNKKNAGFTPQERQGFGEL PKGNKKNAGFTPQERQGFGELLQAVPLADS K N A E R Q 1 1 1 0 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 9 0 1018.4832 P27695 P27695 229 237 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 2 0.037752 75.043 By matching By MS/MS 6 0 2 1 1 7947400 0 3604800 4342600 9948 680 10474 42547;42548 35376 35376 1 0 1247800 649710 NAGNCLSPAVIVGLLK PKGTIQVITQGTSLKNAGNCLSPAVIVGLL AGNCLSPAVIVGLLKEASKQADVNLVNAKL K N A L K E 2 0 2 0 1 0 0 2 0 1 3 1 0 0 1 1 0 0 0 2 0 0 16 0 1624.8971 O43175 O43175 365 380 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.01156 70.488 By MS/MS 4 0 1 1 1258600 0 1258600 0 9949 190 10475 42549 35377 35377 1 0 417690 0 NAGVEGSLIVEK IIKRTLKIPAMTIAKNAGVEGSLIVEKIMQ IAKNAGVEGSLIVEKIMQSSSEVGYDAMAG K N A E K I 1 0 1 0 0 0 2 2 0 1 1 1 0 0 0 1 0 0 0 2 0 0 12 0 1214.6507 P10809 P10809 482 493 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.053846 67.93 By matching By MS/MS By matching 4.33 0.471 2 1 1 1 1 39398000 14257000 16662000 8479400 9950 515 10476 42550;42551;42552 35378 35378 0 11123000 5529600 1182700 NAGVILAPLQR YIEKHNLYSSESEDRNAGVILAPLQRNTAE SEDRNAGVILAPLQRNTAEAKT________ R N A Q R N 2 1 1 0 0 1 0 1 0 1 2 0 0 0 1 0 0 0 0 1 0 0 11 0 1150.6822 Q9HAN9 Q9HAN9 262 272 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes yes 2 0.009342 92.491 By MS/MS By MS/MS 6 0 2 1 1 13541000 0 3740100 9801200 9951 2002 10477 42553;42554 35379;35380 35379 2 0 1294700 1466400 NAGYGGLGLSIEGPSK EGHTFQVAEFIVDTRNAGYGGLGLSIEGPS AGYGGLGLSIEGPSKVDINCEDMEDGTCKV R N A S K V 1 0 1 0 0 0 1 5 0 1 2 1 0 0 1 2 0 0 1 0 0 0 16 0 1518.7678 Q14315 Q14315 2068 2083 FLNC Filamin-C yes yes 2 0.000131 100.19 By MS/MS 1 0 1 1 7176400 0 7176400 0 9952 1298 10478 42555 35381 35381 1 0 3507700 0 NAHSTAIAGLTFLHR GLWDLEDKKLINQMRNAHSTAIAGLTFLHR NAHSTAIAGLTFLHREPLLVTNGADNALRI R N A H R E 3 1 1 0 0 0 0 1 2 1 2 0 0 1 0 1 2 0 0 0 0 0 15 0 1607.8532 Q8NI36 Q8NI36 330 344 WDR36 WD repeat-containing protein 36 yes yes 2;3 0.00057465 106.47 By MS/MS 1.33 0.471 2 1 3 28559000 0 0 28559000 9953 1648 10479 42556;42557;42558 35382;35383 35382 2 0 0 6207600 NAIANASTLAEVER KKKGGPSPGDVEAIKNAIANASTLAEVERL KNAIANASTLAEVERLKGLLQSGQIPGRER K N A E R L 4 1 2 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 14 0 1457.7474 P09661 P09661 206 219 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 2.8949E-89 257.92 By MS/MS By MS/MS 6.75 0.433 1 3 3 1 128150000 0 54342000 73804000 9954 491 10480 42559;42560;42561;42562 35384;35385;35386;35387 35385 4 0 29568000 13096000 NALESYAFNMK YKAEDEVQRERVSAKNALESYAFNMKSAVE VSAKNALESYAFNMKSAVEDEGLKGKISEA K N A M K S 2 0 2 0 0 0 1 0 0 0 1 1 1 1 0 1 0 0 1 0 0 0 11 0 1286.5965 P0DMV9;P0DMV8 P0DMV9 540 550 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 1.597E-13 178.94 By matching By MS/MS By MS/MS 3.73 2.05 2 2 2 2 2 1 1 5 5 463340000 1075500 278230000 184040000 9955 501 10481 42563;42564;42565;42566;42567;42568;42569;42570;42571;42572;42573 35388;35389;35390;35391;35392;35393 35389 4 1075500 117840000 35404000 NALESYTYNIK YKSEDEANRDRVAAKNALESYTYNIKQTVE VAAKNALESYTYNIKQTVEDEKLRGKISEQ K N A I K Q 1 0 2 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 2 0 0 0 11 0 1314.6456 P54652 P54652 543 553 HSPA2 Heat shock-related 70 kDa protein 2 yes yes 2 0.0073735 96.331 By MS/MS 1 0 1 1 7583500 7583500 0 0 9956 930 10482 42574 35394 35394 1 7583500 0 0 NALGPGLSPELGPLPALR LAQGLPQLHSLVLRRNALGPGLSPELGPLP GPGLSPELGPLPALRVLDLSGNALEALPPG R N A L R V 2 1 1 0 0 0 1 3 0 0 5 0 0 0 4 1 0 0 0 0 0 0 18 0 1770.9992 Q8N1G4 Q8N1G4 85 102 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 1.1733E-12 172.76 By MS/MS By MS/MS 4.29 1.75 4 1 2 4 3 91207000 0 43018000 48188000 9957 1600 10483 42575;42576;42577;42578;42579;42580;42581 35395;35396;35397;35398;35399;35400 35397 6 0 17851000 9296700 NALLQLTDSQIADVAR VESVFDIMEMEDEERNALLQLTDSQIADVA ALLQLTDSQIADVARFCNRYPNIELSYEVV R N A A R F 3 1 1 2 0 2 0 0 0 1 3 0 0 0 0 1 1 0 0 1 0 0 16 0 1726.9214 O75643 O75643 1994 2009 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.2892E-198 308 By MS/MS By MS/MS By MS/MS 1.17 0.373 5 1 1 2 3 165030000 987800 74225000 89818000 9958 277 10484 42582;42583;42584;42585;42586;42587 35401;35402;35403;35404;35405;35406;35407;35408 35405 8 987800 36280000 19412000 NALLSLAK DLAKDITSDTSGDFRNALLSLAKGDRSEDF DTSGDFRNALLSLAKGDRSEDFGVNEDLAD R N A A K G 2 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 8 0 828.5069 P04083 P04083 178 185 ANXA1 Annexin A1 yes yes 2 0.006677 97.798 By MS/MS By MS/MS By matching 3 1.87 1 1 1 1 1 1 2 27389000 17734000 5490500 4164500 9959 410 10485 42588;42589;42590;42591 35409;35410 35409 2 17734000 1900600 882880 NALQQENHIIDGVK RGLGWVQFSSEEGLRNALQQENHIIDGVKV RNALQQENHIIDGVKVQVHTRRPKLPQTSD R N A V K V 1 0 2 1 0 2 1 1 1 2 1 1 0 0 0 0 0 0 0 1 0 0 14 0 1577.8162 Q9GZT3 Q9GZT3 75 88 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes yes 2;3 0.0034157 94.616 By matching By MS/MS 9.5 0.5 2 2 1 3 6251800 1112300 5139500 0 9960 1955 10486 42592;42593;42594;42595 35411;35412 35412 2 624340 23839000 0 NAPAIIFIDELDAIAPK ESESNLRKAFEEAEKNAPAIIFIDELDAIA PAIIFIDELDAIAPKREKTHGEVERRIVSQ K N A P K R 4 0 1 2 0 0 1 0 0 4 1 1 0 1 2 0 0 0 0 0 0 0 17 0 1809.9877 P55072 P55072 296 312 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.013957 65.495 By MS/MS 3 0.816 1 1 1 3 14275000 0 0 14275000 9961 936 10487 42596;42597;42598 35413;35414 35413 2 0 0 3095000 NAQGEEKEILTAQALELSLK LWAYLTIEQLLDKRKNAQGEEKEILTAQAL EKEILTAQALELSLKYHFVTPLTSMVVTKP K N A L K Y 3 0 1 0 0 2 4 1 0 1 4 2 0 0 0 1 1 0 0 0 0 0 20 1 2184.1638 CON__Q0V8M9 CON__Q0V8M9 572 591 yes yes 3 1.4098E-08 109.65 By MS/MS 9 0 1 1 7893600 7893600 0 0 + 9962 75 10488 42599 35415 35415 1 4430700 0 0 NAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILK EQKRAQLSQYFDAVKNAQHVEVESIPLPDM QDIPLPGAQPPSILKKTSAYGPPTRAVSIL K N A L K K 3 0 2 2 0 3 2 1 2 5 4 1 1 0 8 3 0 0 0 2 0 0 39 0 4175.2089 Q9Y2W2 Q9Y2W2 130 168 WBP11 WW domain-binding protein 11 yes yes 4 1.3394E-19 68.503 By MS/MS 2.5 0.5 1 1 2 20588000 0 0 20588000 9963 2253 10489 42600;42601 35416;35417 35416 2 0 0 4059500 NAQMAQSPILLLGGAASTLLQNR VTAGPGLTNTVTAVKNAQMAQSPILLLGGA ILLLGGAASTLLQNRGALQAVDQLSLFRPL K N A N R G 4 1 2 0 0 3 0 2 0 1 5 0 1 0 1 2 1 0 0 0 0 0 23 0 2366.274 A1L0T0 A1L0T0 135 157 ILVBL Acetolactate synthase-like protein yes yes 3 3.3274E-10 97.974 By MS/MS 3.5 0.5 1 1 2 2232600 0 2232600 0 9964 9 10490 42602;42603 35418 35418 1 0 757620 0 NASEMIDKLTLTFNR SEQSARMTAMDNASKNASEMIDKLTLTFNR NASEMIDKLTLTFNRTRQAVITKELIEIIS K N A N R T 1 1 2 1 0 0 1 0 0 1 2 1 1 1 0 1 2 0 0 0 0 0 15 1 1751.8876 P36542 P36542 263 277 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 3 0.0026077 75.316 By MS/MS By matching 6 0 2 1 1 4914200 0 2728700 2185500 9965 760 10491 42604;42605 35419 35419 1 0 944590 326970 NASMNTQHGTATEVAVETTTPK DEDYCPRSKKANLGKNASMNTQHGTATEVA HGTATEVAVETTTPKQGQNLWFLCDSQKEL K N A P K Q 3 0 2 0 0 1 2 1 1 0 0 1 1 0 1 1 6 0 0 2 0 0 22 0 2287.075 Q9UIG0 Q9UIG0 964 985 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 8.2255E-12 109.08 By MS/MS 2 0.816 1 1 1 3 73011000 0 0 73011000 9966 2164 10492 42606;42607;42608 35420;35421 35420 2 0 0 15819000 NATILELR YDDLRRGRSEADSDKNATILELRSQLQISN SEADSDKNATILELRSQLQISNNRTLELQG K N A L R S 1 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 8 0 928.53418 P15924 P15924 1746 1753 DSP Desmoplakin yes yes 2 0.0036185 104.44 By MS/MS By MS/MS 5.25 4.26 2 1 1 3 1 15402000 9132100 0 6270000 9967 572 10493 42609;42610;42611;42612 35422;35423;35424 35424 3 8485400 0 1351000 NATNVEQSFMTMAAEIK FADSLGIPFLETSAKNATNVEQSFMTMAAE TNVEQSFMTMAAEIKKRMGPGATAGGAEKS K N A I K K 3 0 2 0 0 1 2 0 0 1 0 1 2 1 0 1 2 0 0 1 0 0 17 0 1883.8757 P62820 P62820 157 173 RAB1A Ras-related protein Rab-1A yes yes 2;3 7.352E-06 131.06 By matching By MS/MS 7 0 4 2 2 10306000 0 738520 9567000 9968 1034 10494 42613;42614;42615;42616 35425;35426 35425 2 0 424060 1697600 NAVITVPAYFNDSQR KMKETAENYLGHTAKNAVITVPAYFNDSQR NAVITVPAYFNDSQRQATKDAGQISGLNVL K N A Q R Q 2 1 2 1 0 1 0 0 0 1 0 0 0 1 1 1 1 0 1 2 0 0 15 0 1693.8424 P38646 P38646 188 202 HSPA9 Stress-70 protein, mitochondrial yes yes 2 9.6101E-05 154.15 By matching By MS/MS By MS/MS 2.25 0.829 1 1 2 1 2 1 41372000 1771100 17277000 22324000 9969 774 10495 42617;42618;42619;42620 35427;35428;35429 35429 3 1771100 7410200 4329800 NAVLAAMAEMVLQVLSGDQLEAAAR CILLDHLDGENYMMRNAVLAAMAEMVLQVL VLQVLSGDQLEAAARDTRDQFLDTLQAHGH R N A A R D 7 1 1 1 0 2 2 1 0 0 4 0 2 0 0 1 0 0 0 3 0 0 25 0 2570.3196 Q15021 Q15021 335 359 NCAPD2 Condensin complex subunit 1 yes yes 3 0.0010517 49.593 By MS/MS 2 0 1 1 748330 0 0 748330 9970 1332 10496 42621 35430 35430 600;601 1 0 0 169110 NAVLFEAISLIIHHDSEPNLLVR QEPPKSKKVQHSNAKNAVLFEAISLIIHHD SLIIHHDSEPNLLVRACNQLGQFLQHRETN K N A V R A 2 1 2 1 0 0 2 0 2 3 4 0 0 1 1 2 0 0 0 2 0 0 23 0 2599.4122 O94973 O94973 306 328 AP2A2 AP-2 complex subunit alpha-2 yes yes 4 1.4162E-20 143.15 By MS/MS 2 0 1 1 6576200 0 0 6576200 9971 306 10497 42622 35431 35431 1 0 0 1486100 NAVPITPTLNR YQGPIVLNPWDQVKRNAVPITPTLNREQLS QVKRNAVPITPTLNREQLSTSEENSKKTVD R N A N R E 1 1 2 0 0 0 0 0 0 1 1 0 0 0 2 0 2 0 0 1 0 0 11 0 1194.6721 CON__P02663 CON__P02663 115 125 yes yes 2 0.0010632 113.71 By MS/MS By matching 6 3.42 1 1 1 1 1 1 5 1 139280000 137960000 1328500 0 + 9972 40 10498 42623;42624;42625;42626;42627;42628 35432;35433;35434;35435 35435 4 148450000 598220 0 NAVWALSNLCR LLQLFSKQNRLTMTRNAVWALSNLCRGKSP TMTRNAVWALSNLCRGKSPPPEFAKVSPCL R N A C R G 2 1 2 0 1 0 0 0 0 0 2 0 0 0 0 1 0 1 0 1 0 0 11 0 1302.6503 P52294;O60684;O15131 P52294 231 241 KPNA1;KPNA6;KPNA5 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed;Importin subunit alpha-7;Importin subunit alpha-6 no no 2 1.7902E-05 108.57 By MS/MS 4 0 1 1 0 0 0 0 9973 904;167 10499 42629 35436 35436 1 0 0 0 NAYVWTLK WAPESNRIVTCGTDRNAYVWTLKGRTWKPT VTCGTDRNAYVWTLKGRTWKPTLVILRINR R N A L K G 1 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 1 1 0 0 8 0 993.52837 O15143 O15143 75 82 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 2 0.054369 71.877 By MS/MS By matching 6 0 2 1 1 7324900 0 5759000 1566000 9974 168 10500 42630;42631 35437 35437 1 0 1993600 234290 NCIVLIDSTPYR NASNNELVRTKTLVKNCIVLIDSTPYRQWY LVKNCIVLIDSTPYRQWYESHYALPLGRKK K N C Y R Q 0 1 1 1 1 0 0 0 0 2 1 0 0 0 1 1 1 0 1 1 0 0 12 0 1449.7286 P62241 P62241 99 110 RPS8 40S ribosomal protein S8 yes yes 2 1.6879E-25 202.2 By MS/MS By MS/MS 7 0 2 1 1 54200000 0 3731900 50468000 9975 1008 10501 42632;42633 35438;35439 35439 2 0 2142900 8955200 NCLALADDKK WGADKCEELLEKTVKNCLALADDKKLKSIA EKTVKNCLALADDKKLKSIAFPSIGSGRNG K N C K K L 2 0 1 2 1 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 1 1146.5703 O75367 O75367 296 305 H2AFY Core histone macro-H2A.1 yes yes 2 0.00038746 122.13 By MS/MS 5 0 1 1 44859000 0 0 44859000 9976 253 10502 42634 35440 35440 1 0 0 6257000 NCLTNFHGMDLTR AFRKFKLITEDVQGKNCLTNFHGMDLTRDK GKNCLTNFHGMDLTRDKMCSMVKKWQTMIE K N C T R D 0 1 2 1 1 0 0 1 1 0 2 0 1 1 0 0 2 0 0 0 0 0 13 0 1577.7079 P61247 P61247 95 107 RPS3A 40S ribosomal protein S3a yes yes 2;3 1.3554E-24 199.03 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 80437000 5321500 0 75116000 9977 988 10503 42635;42636;42637;42638 35441;35442 35442 2 7085600 0 11334000 NDASEVVLAGER SSVPSEDEWYCPECRNDASEVVLAGERLRE ECRNDASEVVLAGERLRESKKKAKMASATS R N D E R L 2 1 1 1 0 0 2 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1258.6153 Q96T88 Q96T88 365 376 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 4.9615E-12 178.54 By MS/MS By MS/MS 2.67 0.745 3 2 1 2 4 37938000 0 7679200 30259000 9978 1841 10504 42639;42640;42641;42642;42643;42644 35443;35444;35445 35444 3 0 3458000 5946000 NDEELNK KKTRIIPRHLQLAIRNDEELNKLLGKVTIA RHLQLAIRNDEELNKLLGKVTIAQGGVLPN R N D N K L 0 0 2 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 7 0 860.38758 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q16777;Q6FI13;Q8IUE6;Q93077;Q7L7L0;P04908 Q99878 90 96 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AC;HIST2H2AA3;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2 0.012415 108.09 By MS/MS 8 0 1 1 0 0 0 0 9979 497;1399;1473;1740;574;1566 10505 42645 35446 35446 1 0 0 0 NDEELNKLLGGVTIAQGGVLPNIQAVLLPK KKTRIIPRHLQLAIRNDEELNKLLGGVTIA QGGVLPNIQAVLLPKKTSATVGPKAPSGGK R N D P K K 2 0 3 1 0 2 2 4 0 2 6 2 0 0 2 0 1 0 0 3 0 0 30 1 3112.7496 P16104;Q8IUE6 P16104 90 119 H2AFX;HIST2H2AB Histone H2AX;Histone H2A type 2-B no no 3;4 3.0734E-19 94.006 By MS/MS 8 0 2 2 5047900 0 0 5047900 9980 574;1566 10506 42646;42647 35447;35448 35447 2 0 0 773890 NDEELNKLLGK KKTRIIPRHLQLAIRNDEELNKLLGKVTIA LAIRNDEELNKLLGKVTIAQGGVLPNIQAV R N D G K V 0 0 2 1 0 0 2 1 0 0 3 2 0 0 0 0 0 0 0 0 0 0 11 1 1271.6721 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;Q16777;Q6FI13 Q99878 90 100 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;HIST2H2AC;HIST2H2AA3 Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 2-C;Histone H2A type 2-A no no 2;3 1.7837E-72 239.54 By MS/MS By MS/MS 7.61 1.46 2 2 4 5 3 2 12 6 1191600000 0 694600000 496950000 9981 497;1399;1473 10507 42648;42649;42650;42651;42652;42653;42654;42655;42656;42657;42658;42659;42660;42661;42662;42663;42664;42665 35449;35450;35451;35452;35453;35454;35455;35456;35457;35458;35459;35460;35461;35462;35463;35464;35465;35466 35455 17 0 523380000 78250000 NDEELNKLLGR KKTRIIPRHLQLAIRNDEELNKLLGRVTIA LAIRNDEELNKLLGRVTIAQGGVLPNIQAV R N D G R V 0 1 2 1 0 0 2 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 11 1 1299.6783 Q93077;Q7L7L0;P04908 Q93077 90 100 HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E yes no 2;3 1.3694E-08 166.09 By MS/MS By MS/MS 7.57 0.495 3 4 4 3 141180000 0 62899000 78277000 9982 1740 10508 42666;42667;42668;42669;42670;42671;42672 35467;35468;35469;35470;35471;35472;35473 35472 7 0 31111000 12163000 NDFTEEEEAQVR KGKTPEEIRKTFNIKNDFTEEEEAQVRKEN NIKNDFTEEEEAQVRKENQWCEEK______ K N D V R K 1 1 1 1 0 1 4 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 12 0 1465.6321 P63208 P63208 143 154 SKP1 S-phase kinase-associated protein 1 yes yes 2 1.6816E-12 183 By MS/MS 7.5 0.5 1 1 2 19744000 0 0 19744000 9983 1065 10509 42673;42674 35474;35475 35474 2 0 0 3203500 NDGAAILAAVSSIAQK AKKPMVVLGSSALQRNDGAAILAAVSSIAQ DGAAILAAVSSIAQKIRMTSGVTGDWKVMN R N D Q K I 5 0 1 1 0 1 0 1 0 2 1 1 0 0 0 2 0 0 0 1 0 0 16 0 1527.8257 P28331 P28331 484 499 NDUFS1 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial yes yes 2 7.7662E-05 107.37 By MS/MS 3 0 1 1 1214300 0 1214300 0 9984 690 10510 42675 35476 35476 1 0 517670 0 NDIASHPPVEGSYAPR VETGTQLEKLMENMRNDIASHPPVEGSYAP DIASHPPVEGSYAPRRGEFCIAKFVDGEWY R N D P R R 2 1 1 1 0 0 1 1 1 1 0 0 0 0 3 2 0 0 1 1 0 0 16 0 1708.8169 Q7KZF4 Q7KZF4 716 731 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 1.7444E-05 152 By MS/MS By MS/MS 1.75 0.661 3 4 1 3 5 102440000 0 39458000 62978000 9985 1518 10511 42676;42677;42678;42679;42680;42681;42682;42683 35477;35478;35479;35480;35481 35479 5 0 17866000 14003000 NDKDKPLPPLLAR ERSEAPRRPSRKGLRNDKDKPLPPLLARVG LRNDKDKPLPPLLARVGGNIEVLGFNARQR R N D A R V 1 1 1 2 0 0 0 0 0 0 3 2 0 0 3 0 0 0 0 0 0 0 13 2 1475.846 Q14839 Q14839 1394 1406 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.050191 53.136 By MS/MS By MS/MS 2.4 1.5 2 1 1 1 1 4 77269000 0 19240000 58028000 9986 1321 10512 42684;42685;42686;42687;42688 35482;35483 35482 1 0 9404400 11876000 NDKSEEEQSSSSVK EKIEKEQSKQAVEMKNDKSEEEQSSSSVKK KNDKSEEEQSSSSVKKDETNVKMESEGGAD K N D V K K 0 0 1 1 0 1 3 0 0 0 0 2 0 0 0 5 0 0 0 1 0 0 14 1 1552.6853 P07910 P07910 230 243 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2;3 1.2282E-18 134.49 By MS/MS 6 0 16 16 0 0 0 0 9987 467 10513 42689;42690;42691;42692;42693;42694;42695;42696;42697;42698;42699;42700;42701;42702;42703;42704 35484;35485;35486;35487;35488;35489;35490;35491;35492;35493;35494;35495;35496;35497;35498;35499 35491 16 0 0 0 NDLAVVDVR SAPELKTGISDVFAKNDLAVVDVRIGMTRK SDVFAKNDLAVVDVRIGMTRKFGYVDFESA K N D V R I 1 1 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 9 0 999.53491 P19338 P19338 334 342 NCL Nucleolin yes yes 2 0.00063558 128.57 By MS/MS By MS/MS 3.5 1.12 2 2 2 2 4 4 647740000 0 218950000 428790000 9988 604 10514 42705;42706;42707;42708;42709;42710;42711;42712 35500;35501;35502;35503;35504;35505;35506;35507;35508 35500 9 0 91293000 84880000 NDMTYNYANR ASAEVAQQGTMWQGRNDMTYNYANRQSTGS MWQGRNDMTYNYANRQSTGSAPQGPAYHGV R N D N R Q 1 1 3 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 10 0 1260.5193 O14497 O14497 1502 1511 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 0.031052 77.732 By MS/MS 2 0.816 1 1 1 3 7520900 0 0 7520900 9989 134 10515 42713;42714;42715 35509 35509 1 0 0 1588900 NDQCYDDIR VRQSKFRHVFGQAVKNDQCYDDIRVSRVTW FGQAVKNDQCYDDIRVSRVTWDSSFCAVNP K N D I R V 0 1 1 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 9 0 1197.4721 Q9ULV4 Q9ULV4 20 28 CORO1C Coronin-1C yes yes 2 0.010971 88.177 By MS/MS 5 0 1 1 6411500 0 0 6411500 9990 2192 10516 42716 35510 35510 1 0 0 894290 NDQDTWDYTNPNLSGQGDPGSNPNKR LKIEYAKPTRLNVFKNDQDTWDYTNPNLSG NLSGQGDPGSNPNKRQRQPPLLGDHPAEYG K N D K R Q 0 1 5 4 0 2 0 3 0 0 1 1 0 0 3 2 2 1 1 0 0 0 26 1 2889.255 P14866 P14866 278 303 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 3 5.1873E-63 214.65 By MS/MS By MS/MS 3 1.22 1 2 2 2 1 4 4 137200000 0 30733000 106460000 9991 565 10517 42717;42718;42719;42720;42721;42722;42723;42724 35511;35512;35513;35514;35515;35516 35515 6 0 12265000 19268000 NDSFTTCIELGK LMNNHQGIKAEIDARNDSFTTCIELGKSLL DARNDSFTTCIELGKSLLARKHYASEEIKE R N D G K S 0 0 1 1 1 0 1 1 0 1 1 1 0 1 0 1 2 0 0 0 0 0 12 0 1383.634 Q01082 Q01082 1964 1975 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.058273 70.942 By MS/MS 1 0 1 1 10144000 0 0 10144000 9992 1128 10518 42725 35517 35517 1 0 0 2185600 NDTKEDVFVHQTAIK VKWFNVRNGYGFINRNDTKEDVFVHQTAIK NDTKEDVFVHQTAIKKNNPRKYLRSVGDGE R N D I K K 1 0 1 2 0 1 1 0 1 1 0 2 0 1 0 0 2 0 0 2 0 0 15 1 1743.8792 P16989;Q9Y2T7;P67809 P67809 78 92 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2;3;4 1.826E-57 231.07 By MS/MS By MS/MS 4.08 1.61 2 2 4 6 6 2 2 9 15 971480000 0 369930000 601560000 9993 1072;581 10519 42726;42727;42728;42729;42730;42731;42732;42733;42734;42735;42736;42737;42738;42739;42740;42741;42742;42743;42744;42745;42746;42747;42748;42749 35518;35519;35520;35521;35522;35523;35524;35525;35526;35527;35528;35529;35530;35531;35532;35533;35534 35533 17 0 102560000 92066000 NDTKEDVFVHQTAIKK VKWFNVRNGYGFINRNDTKEDVFVHQTAIK DTKEDVFVHQTAIKKNNPRKYLRSVGDGET R N D K K N 1 0 1 2 0 1 1 0 1 1 0 3 0 1 0 0 2 0 0 2 0 0 16 2 1871.9741 P16989;P67809 P67809 78 93 YBX3;YBX1 Y-box-binding protein 3;Nuclease-sensitive element-binding protein 1 no no 3;4 1.5127E-05 137.45 By MS/MS By MS/MS 4.11 1.37 1 1 3 3 1 7 2 196460000 0 165300000 31160000 9994 1072;581 10520 42750;42751;42752;42753;42754;42755;42756;42757;42758 35535;35536;35537;35538;35539;35540 35538 6 0 46430000 4418000 NDVMNLLESAGFSR AKKDQYFLDKKMVTKNDVMNLLESAGFSRS KNDVMNLLESAGFSRSNPYYIVKQGKINQM K N D S R S 1 1 2 1 0 0 1 1 0 0 2 0 1 1 0 2 0 0 0 1 0 0 14 0 1551.7351 Q9UQE7 Q9UQE7 119 132 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.2509E-88 251.03 By MS/MS By MS/MS 1.78 0.629 3 5 1 5 4 128220000 0 44495000 83725000 9995 2222 10521;10522 42759;42760;42761;42762;42763;42764;42765;42766;42767 35541;35542;35543;35544;35545;35546;35547;35548 35546 720 7 0 20123000 18525000 NDWHGGAIVSALSQTGSLFKPR PEELALVHNLRKMMKNDWHGGAIVSALSQT IVSALSQTGSLFKPRKAYLPQELLGKEGFD K N D P R K 2 1 1 1 0 1 0 3 1 1 2 1 0 1 1 3 1 1 0 1 0 0 22 1 2340.1975 P51398 P51398 299 320 DAP3 28S ribosomal protein S29, mitochondrial yes yes 4 7.7316E-07 80.412 By MS/MS 5 0 1 1 4526200 0 0 4526200 9996 892 10523 42768 35549 35549 1 0 0 631320 NDYDQLQK KRRRKSVEDRFDQQKNDYDQLQKARQCEKE DRFDQQKNDYDQLQKARQCEKENLGWQKLE K N D Q K A 0 0 1 2 0 2 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 8 0 1022.4669 P15924 P15924 1137 1144 DSP Desmoplakin yes yes 2 0.0018003 110.81 By MS/MS By matching 5.83 3.89 1 1 1 1 2 5 1 22065000 21729000 0 335790 9997 572 10524 42769;42770;42771;42772;42773;42774 35550;35551 35551 2 21276000 0 734410 NEALAALLR QIIKIGLFADIELSRNEALAALLRDGETLE DIELSRNEALAALLRDGETLEELMKLSPEE R N E L R D 3 1 1 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 969.56073 P13797 P13797 248 256 PLS3 Plastin-3 yes yes 2 0.00040447 135.77 By MS/MS By MS/MS By MS/MS 3.8 1.17 3 1 1 1 2 2 30966000 7033200 10567000 13366000 9998 551 10525 42775;42776;42777;42778;42779 35552;35553;35554;35555 35553 4 8114800 4215800 2493400 NECFLQHK YGEMADCCAKQEPERNECFLQHKDDNPNLP AKQEPERNECFLQHKDDNPNLPRLVRPEVD R N E H K D 0 0 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 8 0 1074.4917 CON__P02768-1;P02768 CON__P02768-1 123 130 ALB Serum albumin yes no 2 0.013817 89.142 By MS/MS 9.5 0.5 1 1 2 15961000 15961000 0 0 + 9999 44 10526 42780;42781 35556 35556 1 9242900 0 0 NECFLQHKDDNPNLPR YGEMADCCAKQEPERNECFLQHKDDNPNLP ECFLQHKDDNPNLPRLVRPEVDVMCTAFHD R N E P R L 0 1 3 2 1 1 1 0 1 0 2 1 0 1 2 0 0 0 0 0 0 0 16 1 1995.9221 CON__P02768-1;P02768 CON__P02768-1 123 138 ALB Serum albumin yes no 3;4 0.00014722 96.414 By MS/MS 9 0 2 2 76201000 76201000 0 0 + 10000 44 10527 42782;42783 35557;35558 35557 1 42772000 0 0 NEDEDSPNKLYTLVTYVPVTTFK RNVPYRIRVRLSRKRNEDEDSPNKLYTLVT KLYTLVTYVPVTTFKNLQTVNVDEN_____ R N E F K N 0 0 2 2 0 0 2 0 0 0 2 2 0 1 2 1 4 0 2 3 0 0 23 1 2672.3221 P62899 P62899 93 115 RPL31 60S ribosomal protein L31 yes yes 3 4.5562E-07 82.177 By MS/MS By MS/MS 8 0 2 1 1 32377000 0 10657000 21720000 10001 1048 10528 42784;42785 35559;35560 35559 2 0 4848600 3329800 NEDEEEEEEEKDEAEDLLGR TSVKKKVKNVGIFLKNEDEEEEEEEKDEAE EEEEEKDEAEDLLGRGSRAALLTERTRNEM K N E G R G 1 1 1 3 0 0 10 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 20 1 2405.983 Q9Y5B9 Q9Y5B9 434 453 SUPT16H FACT complex subunit SPT16 yes yes 2;3 2.0587E-185 294 By MS/MS 1.5 0.5 2 2 4 53558000 0 0 53558000 10002 2296 10529 42786;42787;42788;42789 35561;35562 35562 2 0 0 12013000 NEDITEPQSILAAAEK LEKASRELWMRVWSRNEDITEPQSILAAAE EDITEPQSILAAAEKAGMSAEQAQGLLEKI R N E E K A 3 0 1 1 0 1 3 0 0 2 1 1 0 0 1 1 1 0 0 0 0 0 16 0 1727.8578 Q9Y2Q3 Q9Y2Q3 129 144 GSTK1 Glutathione S-transferase kappa 1 yes yes 2 0.0047131 81.803 By MS/MS 7 0 1 1 7908700 0 0 7908700 10003 2244 10530 42790 35563 35563 1 0 0 1403300 NEDSLVFVQTDK GPTQEFKKRTTVMVKNEDSLVFVQTDKSIY MVKNEDSLVFVQTDKSIYKPGQTVKFRVVS K N E D K S 0 0 1 2 0 1 1 0 0 0 1 1 0 1 0 1 1 0 0 2 0 0 12 0 1393.6725 P01023 P01023 124 135 A2M Alpha-2-macroglobulin yes yes 2 0.0012827 115 By MS/MS 9 0 1 1 5951300 5951300 0 0 10004 370 10531 42791 35564 35564 1 3340500 0 0 NEDTTFDKEFLLELLVSR HQVASYLCLLPTLPKNEDTTFDKEFLLELL TTFDKEFLLELLVSRHERRISQIQQLNQMP K N E S R H 0 1 1 2 0 0 3 0 0 0 4 1 0 2 0 1 2 0 0 1 0 0 18 1 2168.1001 O60306 O60306 393 410 AQR Intron-binding protein aquarius yes yes 3 0.00087138 73.405 By MS/MS 1.5 0.5 1 1 2 3933700 0 0 3933700 10005 225 10532 42792;42793 35565 35565 1 0 0 860010 NEEDAAELVALAQAVNAR LHQFCAQHGRPPRPRNEEDAAELVALAQAV DAAELVALAQAVNARALPAVQQNNLDEDLI R N E A R A 6 1 2 1 0 1 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 18 0 1882.9385 P22314 P22314 351 368 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 3 9.6652E-05 94.922 By MS/MS 1.5 0.5 1 1 2 4139400 0 0 4139400 10006 630 10533 42794;42795 35566 35566 1 0 0 923590 NEEPSEEEIDAPKPK IEKKVVSSKTKKVTKNEEPSEEEIDAPKPK NEEPSEEEIDAPKPKKMKKEKEMNGETREK K N E P K K 1 0 1 1 0 0 5 0 0 1 0 2 0 0 3 1 0 0 0 0 0 0 15 1 1710.7948 Q9NR30 Q9NR30 117 131 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.00066578 119.76 By MS/MS By MS/MS 2.17 0.687 1 3 2 1 5 45374000 0 10721000 34653000 10007 2038 10534 42796;42797;42798;42799;42800;42801 35567;35568;35569;35570;35571 35567 5 0 4827800 7133700 NEEQKAEQEEGK PRRQSMKEKEHQVVRNEEQKAEQEEGKVAQ VVRNEEQKAEQEEGKVAQREEELEETGNQH R N E G K V 1 0 1 0 0 2 5 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 12 1 1417.6321 Q9H307 Q9H307 300 311 PNN Pinin yes yes 3 0.0085122 76.522 By MS/MS 2.5 0.5 1 1 2 3692400 0 3692400 0 10008 1978 10535 42802;42803 35572;35573 35572 2 0 1649100 0 NEESLVFVQTDKPIYKPEQTVK GPTQEFKKRTTVLVKNEESLVFVQTDKPIY VQTDKPIYKPEQTVKFRIVLLDESFHPLNE K N E V K F 0 0 1 1 0 2 3 0 0 1 1 3 0 1 2 1 2 0 1 3 0 0 22 2 2591.3483 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 124 145 yes yes 4 0.0025825 54.69 By MS/MS 3 0 1 1 15366000 15366000 0 0 + 10009 28 10536 42804 35574 35574 1 17729000 0 0 NEGNIFPNPEATFVK YLRINFYCPGSALGRNEGNIFPNPEATFVK NEGNIFPNPEATFVKEITYRASNIKAPGEQ R N E V K E 1 0 3 0 0 0 2 1 0 1 0 1 0 2 2 0 1 0 0 1 0 0 15 0 1675.8206 Q9Y5B9 Q9Y5B9 582 596 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00028449 140.45 By MS/MS By MS/MS 2 0.707 1 2 1 2 2 251750000 0 74752000 176990000 10010 2296 10537 42805;42806;42807;42808 35575;35576;35577;35578;35579;35580 35578 6 0 33489000 39451000 NEGQLNGETNTPIEGNQAGDAAASAR VSKFREIQQELSSGRNEGQLNGETNTPIEG PIEGNQAGDAAASARSLPNEEIVQKIEEVL R N E A R S 5 1 4 1 0 2 3 4 0 1 1 0 0 0 1 1 2 0 0 0 0 0 26 0 2584.175 P18583 P18583 29 54 SON Protein SON yes yes 3 2.9018E-30 156.33 By MS/MS 1 0 1 1 6646200 0 6646200 0 10011 596 10538 42809 35581 35581 1 0 3248500 0 NEGSESAPEGQAQQR RNYQQNYQNSESGEKNEGSESAPEGQAQQR NEGSESAPEGQAQQRRPYRRRRFPPYYMRR K N E Q R R 2 1 1 0 0 3 3 2 0 0 0 0 0 0 1 2 0 0 0 0 0 0 15 0 1586.6921 P67809 P67809 171 185 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 2 0.00028429 128.85 By MS/MS By MS/MS 5.25 0.433 3 1 1 3 14277000 0 12248000 2029800 10012 1072 10539 42810;42811;42812;42813 35582;35583;35584;35585;35586 35582 5 0 3157000 289020 NEGTATYAAAVLFR AEGASAPLMELLHSRNEGTATYAAAVLFRI RNEGTATYAAAVLFRISEDKNPDYRKRVSV R N E F R I 4 1 1 0 0 0 1 1 0 0 1 0 0 1 0 0 2 0 1 1 0 0 14 0 1482.7467 P14923 P14923 638 651 JUP Junction plakoglobin yes yes 2 2.7433E-11 177.57 By MS/MS By MS/MS By MS/MS 5.55 2.5 1 2 1 1 2 1 1 2 7 1 3 62310000 40422000 3046400 18842000 10013 567 10540 42814;42815;42816;42817;42818;42819;42820;42821;42822;42823;42824 35587;35588;35589;35590;35591;35592;35593;35594 35588 7 38419000 1298700 3955000 NEGVNWLR VECARVYAENAIRKKNEGVNWLRMASRVDA ENAIRKKNEGVNWLRMASRVDAVASKVQTA K N E L R M 0 1 2 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 8 0 986.49338 Q9HD42 Q9HD42 57 64 CHMP1A Charged multivesicular body protein 1a yes yes 2 0.0003467 114.78 By matching By MS/MS By MS/MS 6.67 0.471 1 2 1 1 1 10572000 4690500 5881400 0 10014 2016 10541 42825;42826;42827 35595;35596 35596 1 6245500 3377200 0 NELAETLALLK DDQDGSSWKCIVRNRNELAETLALLKAQID VRNRNELAETLALLKAQIDPVLLKNSSQQD R N E L K A 2 0 1 0 0 0 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 11 0 1213.6918 Q96T23 Q96T23 196 206 RSF1 Remodeling and spacing factor 1 yes yes 2 0.0099702 91.265 By matching By MS/MS 1.33 0.471 2 1 1 2 14664000 8569300 0 6094900 10015 1837 10542 42828;42829;42830 35597 35597 1 8569300 0 1334900 NELESYAYSLK FAEEDKKLKERIDTRNELESYAYSLKNQIG IDTRNELESYAYSLKNQIGDKEKLGGKLSS R N E L K N 1 0 1 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 2 0 0 0 11 0 1315.6296 P11021 P11021 563 573 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.0038539 104.22 By MS/MS By MS/MS By MS/MS 2.4 0.8 1 1 3 1 1 3 90222000 8961700 14916000 66345000 10016 516 10543 42831;42832;42833;42834;42835 35598;35599;35600 35599 3 10340000 6358500 13069000 NELFLPGR RNVYRMLFKSKAYERNELFLPGRMAYVVDL KSKAYERNELFLPGRMAYVVDLDDEYADTD R N E G R M 0 1 1 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 0 0 0 0 8 0 944.50797 Q13123 Q13123 229 236 IK Protein Red yes yes 2 0.00016293 142.64 By MS/MS By MS/MS 4.38 2.64 1 1 2 1 1 1 1 3 5 189560000 0 19199000 170360000 10017 1222 10544 42836;42837;42838;42839;42840;42841;42842;42843 35601;35602 35601 2 0 8285600 28627000 NELMYQLEQDHDLQAILQER PLAFATPEQISMDLKNELMYQLEQDHDLQA QLEQDHDLQAILQERELLPVKKFESEILEA K N E E R E 1 1 1 2 0 4 3 0 1 1 4 0 1 0 0 0 0 0 1 0 0 0 20 0 2485.1907 Q08211 Q08211 366 385 DHX9 ATP-dependent RNA helicase A yes yes 2;3 0 412.21 By MS/MS By MS/MS 1.86 0.639 2 4 1 1 6 201560000 0 7458900 194100000 10018 1182 10545;10546 42844;42845;42846;42847;42848;42849;42850 35603;35604;35605;35606;35607;35608;35609 35608 565 7 0 3358800 43391000 NELQLVDLPTGR LSFATSTPNNMGLVRNELQLVDLPTGRSIA LVRNELQLVDLPTGRSIAFRGERGNDESAI R N E G R S 0 1 1 1 0 1 1 1 0 0 3 0 0 0 1 0 1 0 0 1 0 0 12 0 1353.7252 Q9BZH6 Q9BZH6 545 556 WDR11 WD repeat-containing protein 11 yes yes 2 0.0080278 97.452 By MS/MS By matching 2.5 0.5 1 1 1 1 8551700 0 2210700 6341000 10019 1942 10547 42851;42852 35610 35610 1 0 995500 1229900 NELSGALTGLTR RELPLRLADFGVLHRNELSGALTGLTRVRR LHRNELSGALTGLTRVRRFQQDDAHIFCAM R N E T R V 1 1 1 0 0 0 1 2 0 0 3 0 0 0 0 1 2 0 0 0 0 0 12 0 1230.6568 P26639 P26639 443 454 TARS Threonine--tRNA ligase, cytoplasmic yes yes 2 2.3574E-05 152.04 By MS/MS By MS/MS 4.86 2.47 1 2 1 1 1 1 6 1 45172000 0 22513000 22659000 10020 672 10548 42853;42854;42855;42856;42857;42858;42859 35611;35612;35613;35614 35614 4 0 10190000 4394800 NENEEILERPAQLANAR EGFGHRPHKDLWASKNENEEILERPAQLAN NEEILERPAQLANARETPHSPGVEDAPIAK K N E A R E 3 2 3 0 0 1 4 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 17 1 1965.9868 Q9UHB6 Q9UHB6 469 485 LIMA1 LIM domain and actin-binding protein 1 yes yes 2;3 1.2272E-91 257.02 By MS/MS By MS/MS 2.67 0.745 3 2 1 1 5 71795000 0 7145200 64650000 10021 2150 10549 42860;42861;42862;42863;42864;42865 35615;35616;35617;35618 35617 4 0 3217600 13930000 NENPVDYTVQIPPSTTYAITPMK LGMDPLPSKMPKKPKNENPVDYTVQIPPST VQIPPSTTYAITPMKRPMEEDGEEKSPSKK K N E M K R 1 0 2 1 0 1 1 0 0 2 0 1 1 0 4 1 4 0 2 2 0 0 23 0 2578.2625 Q12906 Q12906 349 371 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 2.7023E-21 159.04 By MS/MS By MS/MS 2.33 0.667 1 4 4 6 3 76342000 0 56433000 19909000 10022 1211 10550 42866;42867;42868;42869;42870;42871;42872;42873;42874 35619;35620;35621;35622;35623;35624;35625;35626;35627;35628;35629;35630;35631 35623 13 0 24888000 4043600 NENQLIIFADDTYPR VSDVQESFIWVRYKRNENQLIIFADDTYPR NENQLIIFADDTYPRWVTTASLLDYDTVAG R N E P R W 1 1 2 2 0 1 1 0 0 2 1 0 0 1 1 0 1 0 1 0 0 0 15 0 1807.8741 Q15393 Q15393 1017 1031 SF3B3 Splicing factor 3B subunit 3 yes yes 2 3.5102E-07 163.99 By matching By MS/MS 1 0 2 1 1 7690600 1658600 0 6031900 10023 1361 10551 42875;42876 35632 35632 1 1658600 0 1299700 NENTEGSPQEDGVELEGLK EMKAEAEKKNKKKIKNENTEGSPQEDGVEL EGSPQEDGVELEGLKQRLEKKQKREPGTKT K N E L K Q 0 0 2 1 0 1 5 3 0 0 2 1 0 0 1 1 1 0 0 1 0 0 19 0 2043.9233 P11388 P11388 1241 1259 TOP2A DNA topoisomerase 2-alpha yes yes 2 6.5169E-41 214.47 By MS/MS 1.5 0.5 1 1 2 17341000 0 0 17341000 10024 524 10552 42877;42878 35633 35633 1 0 0 3781800 NEQNGAAAHVIAEDVK HKLADIVKINNQLRRNEQNGAAAHVIAEDV EQNGAAAHVIAEDVKLLQFHVATMVDNELP R N E V K L 4 0 2 1 0 1 2 1 1 1 0 1 0 0 0 0 0 0 0 2 0 0 16 0 1664.8118 P24928 P24928 293 308 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.009124 63.091 By MS/MS 1 0 1 1 0 0 0 0 10025 653 10553 42879 35634 35634 1 0 0 0 NEQVEIR QDFFIDLRLPYSVVRNEQVEIRAVLYNYRQ RLPYSVVRNEQVEIRAVLYNYRQNQELKVR R N E I R A 0 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 7 0 886.45084 P01024 P01024 842 848 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 no no 2 0.054984 76.134 By MS/MS 9 0 1 1 930640 930640 0 0 + 10026 371 10554 42880 35635 35635 1 522370 0 0 NETYNSHPLLVK TFPYQHRYRLYGQWKNETYNSHPLLVKVKA QWKNETYNSHPLLVKVKAQTIDRAKYIMKR K N E V K V 0 0 2 0 0 0 1 0 1 0 2 1 0 0 1 1 1 0 1 1 0 0 12 0 1413.7252 Q8NI27 Q8NI27 529 540 THOC2 THO complex subunit 2 yes yes 2;3 0.00024025 131.09 By matching By MS/MS 1.25 0.433 3 1 1 3 59703000 0 1876300 57827000 10027 1647 10555 42881;42882;42883;42884 35636;35637;35638 35637 3 0 917120 12503000 NEVLMVNIGSLSTGGR TEGDKKAAKVQKLSKNEVLMVNIGSLSTGG EVLMVNIGSLSTGGRVSAVKADLGKIVLTN K N E G R V 0 1 2 0 0 0 1 3 0 1 2 0 1 0 0 2 1 0 0 2 0 0 16 0 1645.8458 P41091;Q2VIR3 P41091 401 416 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 8.0163E-109 265.53 By MS/MS By MS/MS 4.82 1.11 1 4 3 2 1 6 5 94106000 0 48138000 45969000 10028 790 10556;10557 42885;42886;42887;42888;42889;42890;42891;42892;42893;42894;42895 35639;35640;35641;35642;35643;35644;35645;35646 35644 392 8 0 15010000 7376000 NEVNGTSEDIKSEGDTQSN QSEDTNTESKESDTKNEVNGTSEDIKSEGD GTSEDIKSEGDTQSN_______________ K N E S N - 0 0 3 2 0 1 3 2 0 1 0 1 0 0 0 3 2 0 0 1 0 0 19 1 2022.8614 O95232 O95232 414 432 LUC7L3 Luc7-like protein 3 yes yes 2 0.0084909 77.185 By MS/MS 4 0 1 1 3333900 0 0 3333900 10029 312 10558 42896 35647 35647 1 0 0 544540 NEVVVELR FKNKGRDLETMRRQRNEVVVELRKNKRDEH ETMRRQRNEVVVELRKNKRDEHLLKRRNVP R N E L R K 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 8 0 956.5291 O00629 O00629 30 37 KPNA4 Importin subunit alpha-3 yes yes 2 0.052845 84.568 By MS/MS 3.5 0.5 1 1 2 6854800 0 0 6854800 10030 132 10559 42897;42898 35648 35648 0 0 0 1156800 NFAADHFNQEILPVFLNANR EGAKYLKRKDIESIRNFAADHFNQEILPVF HFNQEILPVFLNANRNWNSPVANFIMESQR R N F N R N 3 1 4 1 0 1 1 0 1 1 2 0 0 3 1 0 0 0 0 1 0 0 20 0 2329.1604 Q6PI48 Q6PI48 389 408 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 3 5.7585E-14 121.26 By MS/MS By MS/MS 3 0 2 1 1 18182000 0 3709700 14472000 10031 1495 10560 42899;42900 35649;35650 35650 2 0 1581400 2806900 NFAFLEFR APGNPVLAVQINQDKNFAFLEFRSVDETTQ VQINQDKNFAFLEFRSVDETTQAMAFDGII K N F F R S 1 1 1 0 0 0 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 8 0 1042.5236 P26368 P26368 196 203 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2 2.6853E-14 183.9 By MS/MS By MS/MS By MS/MS 3.3 1.27 1 2 2 3 2 1 4 5 208550000 5314500 24309000 178930000 10032 668 10561 42901;42902;42903;42904;42905;42906;42907;42908;42909;42910 35651;35652;35653;35654;35655;35656;35657;35658;35659 35659 9 4146200 7942000 29822000 NFDEILR KKLKLSILYPATTGRNFDEILRVVISLQLT LYPATTGRNFDEILRVVISLQLTAEKRVAT R N F L R V 0 1 1 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 7 0 905.46068 P30041 P30041 156 162 PRDX6 Peroxiredoxin-6 yes yes 2 0.021479 99.919 By MS/MS By MS/MS 8 1.22 2 1 1 1 3 15756000 0 2024700 13731000 10033 705 10562 42911;42912;42913;42914 35660;35661 35661 2 0 1162600 5569900 NFDVGHVPIR KGVVHDDMECSHYMKNFDVGHVPIRLPRTK SHYMKNFDVGHVPIRLPRTKHLLNVINENF K N F I R L 0 1 1 1 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1152.604 P50579 P50579 386 395 METAP2 Methionine aminopeptidase 2 yes yes 2 2.3104E-05 117.72 By MS/MS By MS/MS 4.5 1.89 1 2 1 1 1 2 4 292070000 0 22665000 269410000 10034 881 10563 42915;42916;42917;42918;42919;42920 35662;35663 35663 2 0 9015900 41057000 NFEALNAR LSPMQKKYYKYILTRNFEALNARGGGNQVS YKYILTRNFEALNARGGGNQVSLLNVVMDL R N F A R G 2 1 2 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 8 0 933.46683 Q14839 Q14839 993 1000 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.0047874 100.45 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 53121000 2783100 17506000 32832000 10035 1321 10564 42921;42922;42923;42924 35664;35665 35665 2 2783100 8556500 7115500 NFESLSEAFSVASAAAVLSHNR EDQVIQLMNAIFSKKNFESLSEAFSVASAA AFSVASAAAVLSHNRYHVPVVVVPEGSASD K N F N R Y 5 1 2 0 0 0 2 0 1 0 2 0 0 2 0 5 0 0 0 2 0 0 22 0 2306.1291 P04844 P04844 245 266 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 3 0.0044869 59.678 By MS/MS 1 0 1 1 3427400 0 0 3427400 10036 420 10565 42925 35666 35666 0 0 0 738500 NFFNPPIISR DKIFEGNNNVRGHVKNFFNPPIISRFIRII RGHVKNFFNPPIISRFIRIIPKTWNQSIAL K N F S R F 0 1 2 0 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 0 0 10 0 1203.64 CON__Q28107;P12259 CON__Q28107 2177 2186 F5 Coagulation factor V;Coagulation factor V heavy chain;Coagulation factor V light chain yes no 2 0.00087758 112.41 By matching By matching By MS/MS 6.67 2.13 2 2 1 1 1 1 4 13764000 2020400 660440 11083000 + 10037 77 10566 42926;42927;42928;42929;42930;42931 35667;35668 35667 2 1576300 379230 3618600 NFGASLLLPGLK HCLAKKTDFSWEEERNFGASLLLPGLKQKN EERNFGASLLLPGLKQKNSVGFSSQLYGYA R N F L K Q 1 0 1 0 0 0 0 2 0 0 4 1 0 1 1 1 0 0 0 0 0 0 12 0 1228.718 Q92552 Q92552 203 214 MRPS27 28S ribosomal protein S27, mitochondrial yes yes 2 0.01716 86.624 By MS/MS By MS/MS 5 0 2 1 1 18006000 0 7353000 10653000 10038 1707 10567 42932;42933 35669;35670 35669 2 0 1895400 1485900 NFGEEVDDESLKELFSQFGK ELGAKAKEFTNVYIKNFGEEVDDESLKELF VDDESLKELFSQFGKTLSVKVMRDPNGKSK K N F G K T 0 0 1 2 0 1 4 2 0 0 2 2 0 3 0 2 0 0 0 1 0 0 20 1 2317.075 Q13310 Q13310 197 216 PABPC4 Polyadenylate-binding protein 4 yes yes 3 0.0009479 64.705 By MS/MS 3.5 0.5 1 1 2 12133000 0 0 12133000 10039 1237 10568 42934;42935 35671;35672 35671 2 0 0 2189000 NFGFSLQDALSR LPPDEYVVTDPEQEKNFGFSLQDALSRARE QEKNFGFSLQDALSRARERRLLEGYEIYVT K N F S R A 1 1 1 1 0 1 0 1 0 0 2 0 0 2 0 2 0 0 0 0 0 0 12 0 1353.6677 Q14676 Q14676 1978 1989 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.038199 76.228 By MS/MS 2 0 1 1 1439100 0 1439100 0 10040 1310 10569 42936 35673 35673 1 0 648030 0 NFGIGQDIQPK EAKKVVNPLFEKRPKNFGIGQDIQPKRDLT KRPKNFGIGQDIQPKRDLTRFVKWPRYIRL K N F P K R 0 0 1 1 0 2 0 2 0 2 0 1 0 1 1 0 0 0 0 0 0 0 11 0 1215.6248 P62424 P62424 38 48 RPL7A 60S ribosomal protein L7a yes yes 2 0.00094734 114.89 By MS/MS By MS/MS By matching 4 2.26 2 1 1 1 1 1 2 2 6 1 358900000 7471100 330680000 20748000 10041 1026 10570 42937;42938;42939;42940;42941;42942;42943;42944;42945 35674;35675;35676;35677 35676 3 14195000 119900000 2894000 NFGIWLR VYCGQVFEKSPLRVKNFGIWLRYDSRSGTH EKSPLRVKNFGIWLRYDSRSGTHNMYREYR K N F L R Y 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 7 0 904.49192 Q02543 Q02543 77 83 RPL18A 60S ribosomal protein L18a yes yes 2 0.0029292 140.01 By MS/MS By MS/MS By MS/MS 5.58 2.1 1 2 1 1 2 3 1 1 1 5 6 265050000 4921600 21445000 238680000 10042 1147 10571 42946;42947;42948;42949;42950;42951;42952;42953;42954;42955;42956;42957 35678;35679;35680;35681;35682;35683;35684;35685;35686 35684 9 10607000 11386000 42453000 NFGSYVTHETK FDKKYNPTWHCIVGRNFGSYVTHETKHFIY IVGRNFGSYVTHETKHFIYFYLGQVAILLF R N F T K H 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 2 0 1 1 0 0 11 0 1281.599 Q96FJ2;P63167 Q96FJ2 61 71 DYNLL2;DYNLL1 Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic yes no 2;3 0.0012289 112.01 By matching By MS/MS By MS/MS 9.6 0.49 4 6 4 2 4 167850000 7861800 12061000 147930000 10043 1062 10572 42958;42959;42960;42961;42962;42963;42964;42965;42966;42967 35687;35688;35689;35690;35691;35692 35692 6 10251000 61021000 137160000 NFHIFYQLLEGGEEETLR LLEKSRVVHQNHGERNFHIFYQLLEGGEEE IFYQLLEGGEEETLRRLGLERNPQSYLYLV R N F L R R 0 1 1 0 0 1 4 2 1 1 3 0 0 2 0 0 1 0 1 0 0 0 18 0 2194.0695 O00159 O00159 236 253 MYO1C Unconventional myosin-Ic yes yes 3 3.6132E-09 120.59 By MS/MS 2 0 1 1 6732700 0 0 6732700 10044 106 10573 42968 35693 35693 1 0 0 1521500 NFHIFYQLLEGGEEETLRR LLEKSRVVHQNHGERNFHIFYQLLEGGEEE FYQLLEGGEEETLRRLGLERNPQSYLYLVK R N F R R L 0 2 1 0 0 1 4 2 1 1 3 0 0 2 0 0 1 0 1 0 0 0 19 1 2350.1706 O00159 O00159 236 254 MYO1C Unconventional myosin-Ic yes yes 4 9.6392E-05 84.829 By MS/MS 2 0 1 1 3605900 0 0 3605900 10045 106 10574 42969 35694 35694 1 0 0 814860 NFILDQCNVYNSGQR QCLSKLVQIASRTKRNFILDQCNVYNSGQR NFILDQCNVYNSGQRRKLLLFKTFSRKVVV R N F Q R R 0 1 3 1 1 2 0 1 0 1 1 0 0 1 0 1 0 0 1 1 0 0 15 0 1826.837 Q1KMD3 Q1KMD3 532 546 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 2.9783E-12 183.99 By MS/MS 2 0 1 1 5540100 0 0 5540100 10046 1404 10575 42970 35695 35695 1 0 0 1252000 NFILDQTNVSAAAQR QCLGKFIEIAARKKRNFILDQTNVSAAAQR NFILDQTNVSAAAQRRKMCLFAGFQRKAVV R N F Q R R 3 1 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 15 0 1646.8376 Q00839 Q00839 576 590 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 1.1576E-218 288.35 By MS/MS By MS/MS By MS/MS 4 2.65 2 7 4 3 2 1 1 1 2 2 10 11 1133900000 43472000 476660000 613790000 10047 1127 10576 42971;42972;42973;42974;42975;42976;42977;42978;42979;42980;42981;42982;42983;42984;42985;42986;42987;42988;42989;42990;42991;42992;42993 35696;35697;35698;35699;35700;35701;35702;35703;35704;35705;35706;35707;35708;35709;35710;35711;35712;35713;35714;35715;35716;35717;35718;35719 35697 24 52378000 224920000 141920000 NFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA K N F A K K 4 0 3 1 0 1 0 0 0 1 1 1 0 1 1 0 0 1 0 0 0 0 15 0 1671.8369 P35579 P35579 15 29 MYH9 Myosin-9 yes yes 2;3 1.395E-11 179.19 By matching By MS/MS By MS/MS 2.17 2.19 4 1 1 1 3 2 265600000 935990 221870000 42792000 10048 752 10577 42994;42995;42996;42997;42998;42999 35720;35721;35722;35723;35724;35725;35726 35721 7 935990 108450000 9242600 NFITAEELR ADQVIASFKVLAGDKNFITAEELRRELPPD VLAGDKNFITAEELRRELPPDQAEYCIARM K N F L R R 1 1 1 0 0 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1091.5611 O43707 O43707 860 868 ACTN4 Alpha-actinin-4 yes yes 2 0.0005049 118.32 By MS/MS By MS/MS 2 0 2 1 1 29813000 0 6947900 22866000 10049 210 10578 43000;43001 35727;35728 35727 2 0 3128800 5167200 NFITAEELRR ADQVIASFKVLAGDKNFITAEELRRELPPD LAGDKNFITAEELRRELPPDQAEYCIARMA K N F R R E 1 2 1 0 0 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 10 1 1247.6622 O43707 O43707 860 869 ACTN4 Alpha-actinin-4 yes yes 2 0.00052284 119.75 By MS/MS 2 0 1 1 8731900 0 8731900 0 10050 210 10579 43002 35729 35729 1 0 3932100 0 NFIVWLEDQK HNPAGFNCKDETEFRNFIVWLEDQKIRHYK ETEFRNFIVWLEDQKIRHYKIEDRGNLRNI R N F Q K I 0 0 1 1 0 1 1 0 0 1 1 1 0 1 0 0 0 1 0 1 0 0 10 0 1290.6608 Q9Y224 Q9Y224 27 36 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.068527 68.016 By MS/MS 7 0 1 1 5781200 0 0 5781200 10051 2227 10580 43003 35730 35730 1 0 0 1025800 NFLPILFNLYGQPVAAGDTPAPR CQAEADRAEVSRFAKNFLPILFNLYGQPVA LYGQPVAAGDTPAPRRAVLETIRTYLTITD K N F P R R 3 1 2 1 0 1 0 2 0 1 3 0 0 2 4 0 1 0 1 1 0 0 23 0 2470.3009 Q5JTH9 Q5JTH9 688 710 RRP12 RRP12-like protein yes yes 2;3 6.4905E-09 92.457 By MS/MS By matching 1.75 0.433 1 3 3 1 14231000 0 7430400 6800400 10052 1438 10581 43004;43005;43006;43007 35731;35732;35733 35733 3 0 3379900 1536800 NFLVFQGAVESIAMK YSEELEKLGILIKARNFLVFQGAVESIAMK NFLVFQGAVESIAMKNPKERTALFEEISRS R N F M K N 2 0 1 0 0 1 1 1 0 1 1 1 1 2 0 1 0 0 0 2 0 0 15 0 1652.8596 Q14683 Q14683 132 146 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00015597 151.98 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 54203000 0 4712800 49490000 10053 1312 10582 43008;43009;43010;43011;43012;43013 35734;35735;35736;35737;35738 35734 5 0 2122300 10929000 NFMIDTYR GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL EIYLAYRNFMIDTYRLNPQEYLTSTACRRN R N F Y R L 0 1 1 1 0 0 0 0 0 1 0 0 1 1 0 0 1 0 1 0 0 0 8 0 1058.4855 Q8TAQ2;Q92922 Q8TAQ2 467 474 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 5.889E-09 168.45 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 41318000 0 9727600 31590000 10054 1653;1731 10583 43014;43015;43016;43017;43018 35739;35740;35741;35742 35740 4 0 4452400 6886500 NFPSPVDAAFR KSHKWDRELISERWKNFPSPVDAAFRQGHN ERWKNFPSPVDAAFRQGHNSVFLIKGDKVW K N F F R Q 2 1 1 1 0 0 0 0 0 0 0 0 0 2 2 1 0 0 0 1 0 0 11 0 1219.5986 P02790 P02790 92 102 HPX Hemopexin yes yes 2 1.0167E-09 120.99 By MS/MS 9 0 2 2 0 0 0 0 10055 401 10584 43019;43020 35743;35744 35744 2 0 0 0 NFQNIFPPSATLHLSNIPPSVSEEDLK YGNSPLHRFKKPGSKNFQNIFPPSATLHLS HLSNIPPSVSEEDLKVLFSSNGGVVKGFKF K N F L K V 1 0 3 1 0 1 2 0 1 2 3 1 0 2 4 4 1 0 0 1 0 0 27 0 2993.5135 P26599 P26599 445 471 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3 7.7716E-63 205.88 By MS/MS By MS/MS 3.88 0.599 2 5 1 3 5 204430000 0 31568000 172860000 10056 671 10585 43021;43022;43023;43024;43025;43026;43027;43028 35745;35746;35747;35748;35749;35750;35751;35752;35753;35754;35755;35756;35757;35758;35759 35757 15 0 10637000 28206000 NFSDNQLQEGK GDPNWFPKKSKENPRNFSDNQLQEGKNVIG ENPRNFSDNQLQEGKNVIGLQMGTNRGASQ R N F G K N 0 0 2 1 0 2 1 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 0 1278.584 P37802 P37802 161 171 TAGLN2 Transgelin-2 yes yes 2 0.00057913 118.67 By MS/MS By MS/MS By MS/MS 7 0 3 1 1 1 23149000 3262100 3941000 15946000 10057 768 10586 43029;43030;43031 35760;35761;35762 35761 3 7030600 2262900 2829500 NFSEIHPGMLLIGFVK KPALVSTVEGGQDPKNFSEIHPGMLLIGFV FSEIHPGMLLIGFVKSIKDYGVFIQFPSGL K N F V K S 0 0 1 0 0 0 1 2 1 2 2 1 1 2 1 1 0 0 0 1 0 0 16 0 1800.9597 Q14690 Q14690 722 737 PDCD11 Protein RRP5 homolog yes yes 2;3 4.7044E-06 159.5 By MS/MS 1.33 0.471 2 1 3 26878000 0 0 26878000 10058 1314 10587 43032;43033;43034 35763;35764 35764 2 0 0 5859600 NFSEVFQK RKYEAIQLTFKQVSKNFSEVFQKLVPGGKA TFKQVSKNFSEVFQKLVPGGKATLVMKKGD K N F Q K L 0 0 1 0 0 1 1 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 8 0 997.4869 Q9UQE7 Q9UQE7 1039 1046 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.0010971 120.52 By matching By MS/MS By MS/MS 2 0.632 1 3 1 1 1 3 45696000 1806400 0 43890000 10059 2222 10588 43035;43036;43037;43038;43039 35765;35766;35767 35766 3 2176500 0 9625600 NFSGTASTSLLGPPPGLLTPPVATELSQNAR SQFKRQRINPLPGGRNFSGTASTSLLGPPP LLTPPVATELSQNARHLQGGEKQRVFTGIV R N F A R H 3 1 2 0 0 1 1 3 0 0 5 0 0 1 5 4 4 0 0 1 0 0 31 0 3092.6142 Q8N163 Q8N163 17 47 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 3 0.049879 18.788 By MS/MS 2 0 1 1 2313500 0 2313500 0 10060 1598 10589 43040 35768 35768 1 0 1041800 0 NFTMDTESSVYNFEGEDYREK EMNEKLSKMGESSLRNFTMDTESSVYNFEG ESSVYNFEGEDYREKQKIAFTEWIEPPKRE R N F E K Q 0 1 2 2 0 0 4 1 0 0 0 1 1 2 0 2 2 0 2 1 0 0 21 1 2560.07 O60264 O60264 702 722 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 4.7309E-15 153.06 By MS/MS 1.5 0.5 1 1 2 42584000 0 0 42584000 10061 223 10590 43041;43042 35769 35769 1 0 0 9545200 NFVELISHQQLSK QYPALITGRSSILLKNFVELISHQQLSKGL LKNFVELISHQQLSKGLINRDRSQSWILSV K N F S K G 0 0 1 0 0 2 1 0 1 1 2 1 0 1 0 2 0 0 0 1 0 0 13 0 1541.8202 Q9NXF1 Q9NXF1 185 197 TEX10 Testis-expressed sequence 10 protein yes yes 2;3 3.2334E-07 166.29 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 34079000 0 4377400 29701000 10062 2089 10591 43043;43044;43045;43046 35770;35771;35772;35773 35771 4 0 1971200 6277200 NFVLPEEIIQEVR ALHESEILPFPNPERNFVLPEEIIQEVREG ERNFVLPEEIIQEVREGKVMIEEEMKEEMK R N F V R E 0 1 1 0 0 1 3 0 0 2 1 0 0 1 1 0 0 0 0 2 0 0 13 0 1584.8512 Q9NV56 Q9NV56 104 116 MRGBP MRG/MORF4L-binding protein yes yes 2 0.00026483 131.82 By MS/MS 7 0.816 1 1 1 3 18396000 0 0 18396000 10063 2064 10592 43047;43048;43049 35774;35775 35774 2 0 0 2860600 NFVNTFIQFK NNRNTASLEMVDTIKNFVNTFIQFKKPIVV VDTIKNFVNTFIQFKKPIVVSVNGPAIGLG K N F F K K 0 0 2 0 0 1 0 0 0 1 0 1 0 3 0 0 1 0 0 1 0 0 10 0 1256.6554 Q9Y6F8;Q9Y6F7;Q9Y232 Q9Y6F8 371 380 CDY1;CDY2A;CDYL Testis-specific chromodomain protein Y 1;Testis-specific chromodomain protein Y 2;Chromodomain Y-like protein yes no 2 0.00064157 131.06 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 5954500 0 2571000 3383500 10064 2229 10593 43050;43051 35776;35777 35776 2 0 853220 656240 NFWSHETR QGLIDENPGLQLIIRNFWSHETRLPSNTLD GLQLIIRNFWSHETRLPSNTLDRLLALNSL R N F T R L 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 0 0 0 0 8 0 1075.4835 P78527 P78527 2523 2530 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00056406 113.89 By MS/MS 1 0 1 1 0 0 0 0 10065 1089 10594 43052 35778 35778 1 0 0 0 NFWVSGLSSTTR KRLSKEEKGRSSCGRNFWVSGLSSTTRATD CGRNFWVSGLSSTTRATDLKNLFSKYGKVV R N F T R A 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 3 2 1 0 1 0 0 12 0 1353.6677 Q15424 Q15424 407 418 SAFB Scaffold attachment factor B1 yes yes 2 3.9042E-05 148.73 By MS/MS By MS/MS By MS/MS 2.18 0.936 3 4 3 1 3 4 4 166000000 9410500 46942000 109640000 10066 1364 10595 43053;43054;43055;43056;43057;43058;43059;43060;43061;43062;43063 35779;35780;35781;35782;35783;35784;35785 35784 7 11138000 21021000 23970000 NFYELSPHIFALSDEAYR LPIYSPEKVEEYRNRNFYELSPHIFALSDE ELSPHIFALSDEAYRSLRDQDKDQCILITG R N F Y R S 2 1 1 1 0 0 2 0 1 1 2 0 0 2 1 2 0 0 2 0 0 0 18 0 2171.0324 O43795 O43795 76 93 MYO1B Unconventional myosin-Ib yes yes 3 4.4771E-05 89.982 By MS/MS 2 0 1 1 6342400 0 0 6342400 10067 212 10596 43064 35786 35786 0 0 0 1433300 NFYNEHEEITNLTPQQLIDLR PPIDHSEIDYPPFEKNFYNEHEEITNLTPQ EEITNLTPQQLIDLRHKLNLRVSGAAPPRP K N F L R H 0 1 3 1 0 2 3 0 1 2 3 0 0 1 1 0 2 0 1 0 0 0 21 0 2586.2714 Q86XP3 Q86XP3 216 236 DDX42 ATP-dependent RNA helicase DDX42 yes yes 3 1.347E-06 93.804 By MS/MS 2 0 1 1 6129800 0 0 6129800 10068 1559 10597 43065 35787 35787 1 0 0 1385200 NFYQEHPDLAR VKKKWNLDELPKFEKNFYQEHPDLARRTAQ KFEKNFYQEHPDLARRTAQEVETYRRSKEI K N F A R R 1 1 1 1 0 1 1 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 11 0 1388.6473 P17844 P17844 57 67 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2;3 6.7418E-05 142.43 By MS/MS By MS/MS By MS/MS 3.14 0.639 1 4 2 1 4 2 183000000 4002100 109060000 69944000 10069 588 10598 43066;43067;43068;43069;43070;43071;43072 35788;35789;35790;35791;35792;35793 35793 5 4617600 43435000 13349000 NFYVEHPEVAR RKKKWDLSELPKFEKNFYVEHPEVARLTPY KFEKNFYVEHPEVARLTPYEVDELRRKKEI K N F A R L 1 1 1 0 0 0 2 0 1 0 0 0 0 1 1 0 0 0 1 2 0 0 11 0 1359.6571 Q92841 Q92841 133 143 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2;3 0.00032714 127.94 By MS/MS By MS/MS By MS/MS 3.67 1.8 1 4 5 4 1 1 1 1 1 6 11 527120000 15296000 138410000 373420000 10070 1725 10599 43073;43074;43075;43076;43077;43078;43079;43080;43081;43082;43083;43084;43085;43086;43087;43088;43089;43090 35794;35795;35796;35797;35798;35799;35800;35801;35802;35803;35804;35805;35806;35807;35808;35809 35798 16 17648000 56339000 71514000 NFYVEVPELAK EPVDHGKIEYEPFRKNFYVEVPELAKMSQE PFRKNFYVEVPELAKMSQEEVNVFRLEMEG K N F A K M 1 0 1 0 0 0 2 0 0 0 1 1 0 1 1 0 0 0 1 2 0 0 11 0 1307.6762 Q7L014 Q7L014 334 344 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.025139 81.338 By matching By MS/MS 1.75 0.829 2 1 1 1 3 17294000 6371400 0 10923000 10071 1520 10600 43091;43092;43093;43094 35810 35810 1 6371400 0 2398100 NGAEFTDSLISNLLR EKNTTFDTFKASLVKNGAEFTDSLISNLLR NGAEFTDSLISNLLRLIQTMRPPAKPSTSK K N G L R L 1 1 2 1 0 0 1 1 0 1 3 0 0 1 0 2 1 0 0 0 0 0 15 0 1648.842 Q14562 Q14562 73 87 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 0.00019082 151.1 By MS/MS 2 0 1 1 4194900 0 4194900 0 10072 1304 10601 43095 35811 35811 1 0 1889000 0 NGDTSTEEPMLNVQR YPPLLRAMIIAERQKNGDTSTEEPMLNVQR NGDTSTEEPMLNVQRIRMEPWDYPAKQEDK K N G Q R I 0 1 2 1 0 1 2 1 0 0 1 0 1 0 1 1 2 0 0 1 0 0 15 0 1689.7628 P82930 P82930 181 195 MRPS34 28S ribosomal protein S34, mitochondrial yes yes 2 2.8409E-58 229.53 By MS/MS 7 0 1 1 4453100 0 0 4453100 10073 1102 10602 43096 35812 35812 1 0 0 790180 NGEILLSPALSYTTK ELQQFFIKIRDELCKNGEILLSPALSYTTK NGEILLSPALSYTTKHLHNDVEKERKEKLP K N G T K H 1 0 1 0 0 0 1 1 0 1 3 1 0 0 1 2 2 0 1 0 0 0 15 0 1605.8614 Q86U86 Q86U86 882 896 PBRM1 Protein polybromo-1 yes yes 2 0.00061991 104.24 By MS/MS 1 0 1 1 7129200 0 0 7129200 10074 1545 10603 43097 35813 35813 1 0 0 1536100 NGENGIHFLLNR TMEDVLNFFSDCRIRNGENGIHFLLNRDGK RIRNGENGIHFLLNRDGKRRGDALIEMESE R N G N R D 0 1 3 0 0 0 1 2 1 1 2 0 0 1 0 0 0 0 0 0 0 0 12 0 1382.7055 Q12849 Q12849 177 188 GRSF1 G-rich sequence factor 1 yes yes 2 0.030457 80.24 By MS/MS 5 0 1 1 2263300 0 2263300 0 10075 1204 10604 43098 35814 35814 0 0 583400 0 NGFLNLALPFFGFSEPLAAPR LYKVVQGHRQLDSYKNGFLNLALPFFGFSE ALPFFGFSEPLAAPRHQYYNQEWTLWDRFE K N G P R H 3 1 2 0 0 0 1 2 0 0 4 0 0 4 3 1 0 0 0 0 0 0 21 0 2277.1946 P22314 P22314 924 944 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 3 0.00011027 73.783 By MS/MS 2 0 1 1 3355400 0 0 3355400 10076 630 10605 43099 35815 35815 1 0 0 758250 NGGHFVISIK DQTRIVALNAHTFLRNGGHFVISIKANCID HTFLRNGGHFVISIKANCIDSTASAEAVFA R N G I K A 0 0 1 0 0 0 0 2 1 2 0 1 0 1 0 1 0 0 0 1 0 0 10 0 1070.5873 P22087 P22087 256 265 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2 0.00048643 128.27 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 74539000 0 27661000 46878000 10077 627 10606 43100;43101;43102 35816;35817;35818 35816 3 0 9575300 6794300 NGGQILIADLR ATCSSDRSVKIFDVRNGGQILIADLRGHEG FDVRNGGQILIADLRGHEGPVWQVAWAHPM R N G L R G 1 1 1 1 0 1 0 2 0 2 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1168.6564 P55735 P55735 44 54 SEC13 Protein SEC13 homolog yes yes 2 0.00012369 140.16 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 23563000 0 6259200 17304000 10078 942 10607 43103;43104;43105;43106 35819;35820 35820 2 0 2052000 2588900 NGHVGISFVPK PPSGREEPCLLKRLRNGHVGISFVPKETGE KRLRNGHVGISFVPKETGEHLVHVKKNGQH R N G P K E 0 0 1 0 0 0 0 2 1 1 0 1 0 1 1 1 0 0 0 2 0 0 11 0 1153.6244 P21333 P21333 2004 2014 FLNA Filamin-A yes yes 2 0.0064955 98.044 By MS/MS 1 0 1 1 4390100 0 4390100 0 10079 623 10608 43107 35821 35821 1 0 2145800 0 NGIDILVGTPGR FYGGTPYGGQFERMRNGIDILVGTPGRIKD RMRNGIDILVGTPGRIKDHIQNGKLDLTKL R N G G R I 0 1 1 1 0 0 0 3 0 2 1 0 0 0 1 0 1 0 0 1 0 0 12 0 1210.667 Q9NR30;Q9BQ39 Q9NR30 307 318 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 no no 2 6.3914E-12 176.6 By MS/MS By matching 3.67 1.25 1 1 1 2 1 46256000 0 39399000 6857900 10080 2038;1876 10609 43108;43109;43110 35822;35823 35822 2 0 16116000 956550 NGLWGHALLLASK LLYGRKKDALESAMKNGLWGHALLLASKMD MKNGLWGHALLLASKMDSRTHARVMTRFAN K N G S K M 2 0 1 0 0 0 0 2 1 0 4 1 0 0 0 1 0 1 0 0 0 0 13 0 1378.7721 O15027 O15027 1640 1652 SEC16A Protein transport protein Sec16A yes yes 3 0.041024 47.532 By MS/MS 1.5 0.5 1 1 2 3709000 0 0 3709000 10081 161 10610 43111;43112 35824 35824 1 0 0 815760 NGMVEDWDSFQAILDHTYK LRVPRENMEAISPLKNGMVEDWDSFQAILD EDWDSFQAILDHTYKMHVKSEASLHPVLMS K N G Y K M 1 0 1 3 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 19 0 2268.0157 O96019 O96019 90 108 ACTL6A Actin-like protein 6A yes yes 3 0.0011556 65.423 By MS/MS 5 0 1 1 9084800 0 0 9084800 10082 354 10611 43113 35825 35825 1 0 0 1267200 NGMVLKPHFHK ______________________________ APSRNGMVLKPHFHKDWQRRVATWFNQPAR R N G H K D 0 0 1 0 0 0 0 1 2 0 1 2 1 1 1 0 0 0 0 1 0 0 11 1 1306.6968 P26373 P26373 6 16 RPL13 60S ribosomal protein L13 yes yes 2;3 0.032672 100.09 By MS/MS By MS/MS 6.14 0.99 1 3 3 3 4 190510000 0 44839000 145670000 10083 669 10612 43114;43115;43116;43117;43118;43119;43120 35826;35827;35828;35829;35830 35827 5 0 20924000 24281000 NGPGFHNDIDSNSTIQEILIPASK EQAKRLLGQIVDRCRNGPGFHNDIDSNSTI DSNSTIQEILIPASKVGLVIGRGGETIKQL R N G S K V 1 0 3 2 0 1 1 2 1 4 1 1 0 1 2 3 1 0 0 0 0 0 24 0 2566.2663 Q96I24 Q96I24 150 173 FUBP3 Far upstream element-binding protein 3 yes yes 3 1.2531E-07 82.216 By MS/MS 4 0 1 1 16367000 0 16367000 0 10084 1797 10613 43121 35831 35831 1 0 5431600 0 NGPLEVAGAAVSAGHGLPAK GGKEFVEAVLELRKKNGPLEVAGAAVSAGH VAGAAVSAGHGLPAKFVIHCNSPVWGADKC K N G A K F 5 0 1 0 0 0 1 4 1 0 2 1 0 0 2 1 0 0 0 2 0 0 20 0 1814.9639 O75367 O75367 252 271 H2AFY Core histone macro-H2A.1 yes yes 2;3 2.2992E-70 232.22 By matching By MS/MS By MS/MS 4.64 1.87 2 2 1 4 5 5 2 1 2 7 13 1046000000 8879100 184200000 852960000 10085 253 10614 43122;43123;43124;43125;43126;43127;43128;43129;43130;43131;43132;43133;43134;43135;43136;43137;43138;43139;43140;43141;43142;43143 35832;35833;35834;35835;35836;35837;35838;35839;35840;35841;35842;35843;35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854;35855;35856;35857;35858;35859;35860;35861;35862;35863;35864 35838 33 8041100 53156000 122980000 NGQDLGVAFK FANFESDEVELSYAKNGQDLGVAFKISKEV LSYAKNGQDLGVAFKISKEVLAGRPLFPHV K N G F K I 1 0 1 1 0 1 0 2 0 0 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1047.5349 Q00839 Q00839 424 433 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 0.00041034 118.33 By MS/MS By MS/MS By MS/MS 2.17 0.687 1 3 2 2 2 2 228520000 22632000 100930000 104960000 10086 1127 10615 43144;43145;43146;43147;43148;43149 35865;35866;35867;35868 35866 4 26608000 44670000 22846000 NGQHVASSPIPVVISQSEIGDASR FVPKETGEHLVHVKKNGQHVASSPIPVVIS IPVVISQSEIGDASRVRVSGQGLHEGHTFE K N G S R V 2 1 1 1 0 2 1 2 1 3 0 0 0 0 2 5 0 0 0 3 0 0 24 0 2447.2405 P21333 P21333 2026 2049 FLNA Filamin-A yes yes 3 7.6257E-21 129.29 By MS/MS 1 0 1 1 4119300 0 4119300 0 10087 623 10616 43150 35869 35869 1 0 2013400 0 NGSFGVLVATNVAAR DIPQKQREITLKGFRNGSFGVLVATNVAAR NGSFGVLVATNVAARGLDIPEVDLVIQSSP R N G A R G 3 1 2 0 0 0 0 2 0 0 1 0 0 1 0 1 1 0 0 3 0 0 15 0 1474.7892 Q9NR30 Q9NR30 485 499 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.018011 69.846 By matching By MS/MS 1.5 0.5 1 1 1 1 7213800 0 1389600 5824200 10088 2038 10617 43151;43152 35870 35870 1 0 679230 1316200 NGTGVLILSPTR IPAVELIVKLRFMPRNGTGVLILSPTRELA MPRNGTGVLILSPTRELAMQTFGVLKELMT R N G T R E 0 1 1 0 0 0 0 2 0 1 2 0 0 0 1 1 2 0 0 1 0 0 12 0 1226.6983 Q9NVP1 Q9NVP1 250 261 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.053891 72.096 By MS/MS By MS/MS 4 0 2 1 1 12220000 0 7098000 5122000 10089 2069 10618 43153;43154 35871;35872 35872 2 0 2355600 836590 NGTQVHGTITGVDVSMNTHLK FLMKLSHETVTIELKNGTQVHGTITGVDVS GTITGVDVSMNTHLKAVKMTLKNREPVQLE K N G L K A 0 0 2 1 0 1 0 3 2 1 1 1 1 0 0 1 4 0 0 3 0 0 21 0 2208.0957 P62314 P62314 21 41 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 2;3;4 6.7894E-71 234.57 By MS/MS By MS/MS 8.38 0.484 5 3 2 6 182800000 0 18123000 164680000 10090 1022 10619;10620 43155;43156;43157;43158;43159;43160;43161;43162 35873;35874;35875;35876;35877 35876 488 5 0 8245400 41399000 NGVMPSHFSR AGVGSMTKIYGGRQRNGVMPSHFSRGSKSV GGRQRNGVMPSHFSRGSKSVARRVLQALEG R N G S R G 0 1 1 0 0 0 0 1 1 0 0 0 1 1 1 2 0 0 0 1 0 0 10 0 1130.5291 P39019 P39019 85 94 RPS19 40S ribosomal protein S19 yes yes 2 0.0072262 93.111 By MS/MS By MS/MS 7.67 0.471 1 2 2 1 11708000 0 11708000 0 10091 777 10621 43163;43164;43165 35878;35879;35880 35879 3 0 5713200 0 NGVQAMVEFDSVQSAQR CNPCGPVQRIVIFRKNGVQAMVEFDSVQSA VQAMVEFDSVQSAQRAKASLNGADIYSGCC K N G Q R A 2 1 1 1 0 3 1 1 0 0 0 0 1 1 0 2 0 0 0 3 0 0 17 0 1864.8738 P14866 P14866 230 246 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 3.6963E-61 234.63 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 49060000 0 25912000 23147000 10092 565 10622;10623 43166;43167;43168;43169;43170 35881;35882;35883;35884;35885;35886 35882 249 5 0 8926600 4071100 NGWMEQISGK YQMHLLKKTLQKCEKNGWMEQISGKGFSGT QKCEKNGWMEQISGKGFSGTFQLCFPYYPS K N G G K G 0 0 1 0 0 1 1 2 0 1 0 1 1 0 0 1 0 1 0 0 0 0 10 0 1148.5284 Q5SSJ5 Q5SSJ5 394 403 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.00077538 113.71 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 25424000 0 7642100 17782000 10093 1445 10624 43171;43172;43173;43174 35887;35888 35888 2 0 3284100 3373300 NGYELSPTAAANFTR FAEYIQKNVQLYKMRNGYELSPTAAANFTR NGYELSPTAAANFTRRNLADCLRSRTPYHV R N G T R R 3 1 2 0 0 0 1 1 0 0 1 0 0 1 1 1 2 0 1 0 0 0 15 0 1610.7689 P49721 P49721 71 85 PSMB2 Proteasome subunit beta type-2 yes yes 2 0.00028164 131.17 By MS/MS By MS/MS 7 0 2 1 1 7563400 0 1578800 5984600 10094 863 10625 43175;43176 35889;35890 35890 2 0 906550 1061900 NGYGFINR IATKVLGTVKWFNVRNGYGFINRNDTKEDV VKWFNVRNGYGFINRNDTKEDVFVHQTAIK R N G N R N 0 1 2 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 1 0 0 0 8 0 939.45626 P16989;Q9Y2T7;P67809 P67809 70 77 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2 0.00020606 139.27 By MS/MS By MS/MS 4 1.63 1 1 1 2 2 2 6 3 130660000 0 88694000 41961000 10095 1072;581 10626 43177;43178;43179;43180;43181;43182;43183;43184;43185 35891;35892;35893;35894;35895;35896 35891 6 0 27290000 6206500 NGYGFVEFEDSR RFFSGYGRLLEVDLKNGYGFVEFEDSRDAD DLKNGYGFVEFEDSRDADDAVYELNGKELC K N G S R D 0 1 1 1 0 0 2 2 0 0 0 0 0 2 0 1 0 0 1 1 0 0 12 0 1418.6103 Q13247 Q13247 35 46 SRSF6 Serine/arginine-rich splicing factor 6 yes yes 2 0.0026276 108.47 By MS/MS 4.5 0.5 1 1 2 9368300 0 0 9368300 10096 1234 10627 43186;43187 35897 35897 1 0 0 1469900 NHAHEHFLDLGESK HLTVPKENKIPTVSKNHAHEHFLDLGESKK KNHAHEHFLDLGESKKQQTNQHNYRTRSAL K N H S K K 1 0 1 1 0 0 2 1 3 0 2 1 0 1 0 1 0 0 0 0 0 0 14 0 1632.7645 Q8WWQ0 Q8WWQ0 774 787 PHIP PH-interacting protein yes yes 4 0.0043035 71.529 By MS/MS 1.5 0.5 1 1 2 15527000 0 0 15527000 10097 1690 10628 43188;43189 35898 35898 1 0 0 3391600 NHDHQEIAVPVANLK EGAKDECNVVEVVARNHDHQEIAVPVANLK NHDHQEIAVPVANLKLSCQPMLSLDDFQLQ R N H L K L 2 0 2 1 0 1 1 0 2 1 1 1 0 0 1 0 0 0 0 2 0 0 15 0 1683.8693 O75607 O75607 88 102 NPM3 Nucleoplasmin-3 yes yes 2;3;4 4.4093E-35 215.72 By MS/MS By MS/MS 7.38 0.484 5 3 3 5 109400000 0 17955000 91449000 10098 274 10629 43190;43191;43192;43193;43194;43195;43196;43197 35899;35900;35901;35902;35903 35902 5 0 9944500 16044000 NHEAQIQDMR QEVAELKKALEEETKNHEAQIQDMRQRHAT EEETKNHEAQIQDMRQRHATALEELSEQLE K N H M R Q 1 1 1 1 0 2 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 10 0 1240.5619 P35580 P35580 1189 1198 MYH10 Myosin-10 yes yes 3 0.0033901 83.862 By MS/MS By MS/MS 1 0 2 1 1 2446800 0 0 2446800 10099 753 10630 43198;43199 35904;35905 35905 2 0 0 527210 NHEEEISTLR MQIEGLKEELAYLKKNHEEEISTLRGQVGG AYLKKNHEEEISTLRGQVGGQVSVEVDSAP K N H L R G 0 1 1 0 0 0 3 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 10 0 1226.5891 CON__P08727;P08727 CON__P08727 217 226 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 3.5905E-14 166.34 By MS/MS By MS/MS 5.33 0.943 1 3 1 1 1 5 109740000 0 20581000 89160000 + 10100 51 10631 43200;43201;43202;43203;43204;43205 35906;35907;35908;35909;35910 35907 5 0 5305200 12656000 NHEEEMKDLR MQIESLTEELAYLKKNHEEEMKDLRNVSTG AYLKKNHEEEMKDLRNVSTGDVNVEMNAAP K N H L R N 0 1 1 1 0 0 3 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 10 1 1299.5877 P13645;CON__P13645 P13645 286 295 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 9.9691E-109 263.6 By MS/MS By MS/MS By MS/MS 5.17 2.74 8 9 11 9 8 8 8 8 9 4 43 10 29 2549800000 1051600000 128620000 1369600000 + 10101 56 10632;10633 43206;43207;43208;43209;43210;43211;43212;43213;43214;43215;43216;43217;43218;43219;43220;43221;43222;43223;43224;43225;43226;43227;43228;43229;43230;43231;43232;43233;43234;43235;43236;43237;43238;43239;43240;43241;43242;43243;43244;43245;43246;43247;43248;43249;43250;43251;43252;43253;43254;43255;43256;43257;43258;43259;43260;43261;43262;43263;43264;43265;43266;43267;43268;43269;43270;43271;43272;43273;43274;43275;43276;43277;43278;43279;43280;43281;43282;43283;43284;43285;43286;43287 35911;35912;35913;35914;35915;35916;35917;35918;35919;35920;35921;35922;35923;35924;35925;35926;35927;35928;35929;35930;35931;35932;35933;35934;35935;35936;35937;35938;35939;35940;35941;35942;35943;35944;35945;35946;35947;35948;35949;35950;35951;35952;35953;35954;35955;35956;35957;35958;35959;35960;35961;35962;35963;35964;35965;35966;35967;35968;35969;35970;35971;35972;35973;35974;35975;35976;35977;35978;35979;35980;35981;35982;35983;35984;35985;35986;35987;35988;35989;35990;35991;35992;35993;35994;35995;35996;35997;35998;35999;36000 35954 41 90 1041500000 60061000 309500000 NHEEEMLALR MQIEGLKEELAYLRKNHEEEMLALRGQTGG AYLRKNHEEEMLALRGQTGGDVNVEMDAAP K N H L R G 1 1 1 0 0 0 3 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 10 0 1240.587 CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P08779 254 263 KRT16 Keratin, type I cytoskeletal 16 yes no 2 4.6252E-39 214.83 By MS/MS By MS/MS 4.85 2.74 2 1 1 2 3 1 1 1 1 9 4 288400000 189030000 0 99363000 + 10102 53 10634;10635 43288;43289;43290;43291;43292;43293;43294;43295;43296;43297;43298;43299;43300 36001;36002;36003;36004;36005;36006;36007;36008;36009;36010;36011 36004 38 11 152420000 0 16401000 NHEEEMNALR MQIESLKEELAYLKKNHEEEMNALRGQVGG AYLKKNHEEEMNALRGQVGGDVNVEMDAAP K N H L R G 1 1 2 0 0 0 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 10 0 1241.5459 CON__P02533;P02533;Q04695;CON__Q04695;CON__Q6IFX2 CON__P02533 252 261 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2;3 1.2601E-49 223.84 By MS/MS By MS/MS By MS/MS 5.23 3.03 7 4 4 3 7 4 3 2 5 5 18 11 15 542550000 130630000 39985000 371940000 + 10103 35;73;91 10636;10637 43301;43302;43303;43304;43305;43306;43307;43308;43309;43310;43311;43312;43313;43314;43315;43316;43317;43318;43319;43320;43321;43322;43323;43324;43325;43326;43327;43328;43329;43330;43331;43332;43333;43334;43335;43336;43337;43338;43339;43340;43341;43342;43343;43344 36012;36013;36014;36015;36016;36017;36018;36019;36020;36021;36022;36023;36024;36025;36026;36027;36028;36029;36030;36031;36032;36033;36034;36035;36036;36037;36038;36039;36040;36041;36042;36043;36044;36045;36046;36047;36048;36049;36050;36051;36052 36019 11 39 116770000 15219000 74222000 NHFYQFGEIR YVGGLGDTITETDLRNHFYQFGEIRTITVV ETDLRNHFYQFGEIRTITVVQRQQCAFIQF R N H I R T 0 1 1 0 0 1 1 1 1 1 0 0 0 2 0 0 0 0 1 0 0 0 10 0 1309.6204 Q9NW64 Q9NW64 250 259 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2;3 1.2357E-07 162.49 By MS/MS By MS/MS 4.88 1.17 1 2 3 1 1 3 5 57540000 0 15150000 42390000 10104 2076 10638 43345;43346;43347;43348;43349;43350;43351;43352 36053;36054;36055;36056;36057 36054 5 0 4272500 6787000 NHKEEMSQLTGQNSGDVNVEINVAPGK MQYETLQEELMALKKNHKEEMSQLTGQNSG NSGDVNVEINVAPGKDLTKTLNDMRQEYEQ K N H G K D 1 0 4 1 0 2 3 3 1 1 1 2 1 0 1 2 1 0 0 3 0 0 27 1 2894.3828 P35527;CON__P35527 P35527 291 317 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 5.6992E-170 277.27 By MS/MS By MS/MS 5.18 2.59 3 2 7 7 4 2 1 6 6 19 19 1672900000 1041100000 0 631790000 + 10105 750 10639;10640 43353;43354;43355;43356;43357;43358;43359;43360;43361;43362;43363;43364;43365;43366;43367;43368;43369;43370;43371;43372;43373;43374;43375;43376;43377;43378;43379;43380;43381;43382;43383;43384;43385;43386;43387;43388;43389;43390 36058;36059;36060;36061;36062;36063;36064;36065;36066;36067;36068;36069;36070;36071;36072;36073;36074;36075;36076;36077;36078;36079;36080;36081;36082;36083;36084;36085;36086;36087;36088;36089;36090;36091;36092;36093;36094;36095;36096;36097;36098;36099;36100;36101;36102;36103;36104;36105 36079 338 48 829810000 0 123030000 NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK MQYETLQEELMALKKNHKEEMSQLTGQNSG VNVEINVAPGKDLTKTLNDMRQEYEQLIAK K N H T K T 1 0 4 2 0 2 3 3 1 1 2 3 1 0 1 2 2 0 0 3 0 0 31 2 3351.6365 P35527;CON__P35527 P35527 291 321 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4;5 1.6221E-60 183.48 By MS/MS By MS/MS 6.06 3.01 2 1 1 2 1 4 5 13 3 442230000 379800000 0 62429000 + 10106 750 10641;10642 43391;43392;43393;43394;43395;43396;43397;43398;43399;43400;43401;43402;43403;43404;43405;43406 36106;36107;36108;36109;36110;36111;36112;36113;36114;36115;36116;36117 36112 338 12 293740000 0 13537000 NHMDITTPPLPPVAPEVLR GTVQPIPCLLSMPTRNHMDITTPPLPPVAP ITTPPLPPVAPEVLRVAEHRHKKGLMYPYI R N H L R V 1 1 1 1 0 0 1 0 1 1 2 0 1 0 5 0 2 0 0 2 0 0 19 0 2096.1088 Q9NZB2 Q9NZB2 539 557 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 3 9.2988E-06 99.092 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 11601000 0 7407300 4193900 10107 2101 10643 43407;43408;43409 36118;36119 36118 2 0 3295000 947740 NHMWIFVNALIENPTFDSQTK KKNKGGVAVKAHQVKNHMWIFVNALIENPT VNALIENPTFDSQTKENMTLQPKSFGSTCQ K N H T K E 1 0 3 1 0 1 1 0 1 2 1 1 1 2 1 1 2 1 0 1 0 0 21 0 2504.2158 P11388 P11388 358 378 TOP2A DNA topoisomerase 2-alpha yes yes 3 7.6524E-09 90.22 By MS/MS 2 0 1 1 2075100 0 0 2075100 10108 524 10644 43410 36120 36120 0 0 0 468920 NHPQMIAVLVDK EGKLHVLRVMFEVWRNHPQMIAVLVDKMIR VWRNHPQMIAVLVDKMIRTQIVDCAAVANW R N H D K M 1 0 1 1 0 1 0 0 1 1 1 1 1 0 1 0 0 0 0 2 0 0 12 0 1363.7282 Q09161 Q09161 596 607 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 6.3419E-05 143.5 By MS/MS 3 0 1 1 13634000 0 0 13634000 10109 1189 10645 43411 36121 36121 1 0 0 2644300 NHTHQQDIDDLKR ILDKATEYIQYMRRKNHTHQQDIDDLKRQN RKNHTHQQDIDDLKRQNALLEQQVRALEKA K N H K R Q 0 1 1 3 0 2 0 0 2 1 1 1 0 0 0 0 1 0 0 0 0 0 13 1 1618.7812 P61244 P61244 78 90 MAX Protein max yes yes 3;4 0.0014147 91.62 By matching By MS/MS 7.6 0.8 3 1 1 1 4 35478000 0 1025500 34453000 10110 987 10646 43412;43413;43414;43415;43416 36122;36123;36124;36125 36123 3 0 588850 6136900 NHTLALTETGSVFAFGENK EGLSHEVIVSAACGRNHTLALTETGSVFAF ALTETGSVFAFGENKMGQLGLGNQTDAVPS R N H N K M 2 0 2 0 0 0 2 2 1 0 2 1 0 2 0 1 3 0 0 1 0 0 19 0 2035.0011 Q9P258 Q9P258 212 230 RCC2 Protein RCC2 yes yes 2 2.0962E-17 183.41 By MS/MS 4 0 1 1 10845000 0 0 10845000 10111 2120 10647 43417 36126 36126 1 0 0 1771300 NHYNEEMSNLR GTRKREYENELAKVRNHYNEEMSNLRNKYE AKVRNHYNEEMSNLRNKYETEINITKTTIK R N H L R N 0 1 3 0 0 0 2 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 11 0 1405.6045 P15924 P15924 1197 1207 DSP Desmoplakin yes yes 2;3 6.6471E-14 182.65 By MS/MS By MS/MS By MS/MS 4 3.69 3 1 1 3 1 1 35530000 11450000 6083300 17997000 10112 572 10648 43418;43419;43420;43421;43422 36127;36128;36129;36130 36130 4 9270100 2973400 3877600 NIAIEFLTLENEIFR VKMVEKEKDALEGEKNIAIEFLTLENEIFR NIAIEFLTLENEIFRKKNHVCQYYIYELQK K N I F R K 1 1 2 0 0 0 3 0 0 3 2 0 0 2 0 0 1 0 0 0 0 0 15 0 1820.9672 Q9NTJ3 Q9NTJ3 303 317 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2;3 1.6439E-17 190.3 By MS/MS 1.67 0.471 1 2 3 15188000 0 0 15188000 10113 2054 10649 43423;43424;43425 36131;36132;36133 36132 3 0 0 3416200 NIANPTAMLLSASNMLR FETGARHPFAQAVGRNIANPTAMLLSASNM ANPTAMLLSASNMLRHLNLEYHSSMIADAV R N I L R H 3 1 3 0 0 0 0 0 0 1 3 0 2 0 1 2 1 0 0 0 0 0 17 0 1815.9335 O43837 O43837 318 334 IDH3B Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial yes yes 2;3 1.423E-05 142.91 By MS/MS 6 0 2 2 8042100 0 8042100 0 10114 216 10650 43426;43427 36134;36135 36134 2 0 2783900 0 NIANTLMAK LWLESVRLEYRAGLKNIANTLMAKALQECP YRAGLKNIANTLMAKALQECPNSGILWSEA K N I A K A 2 0 2 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 9 0 974.5219 O94906 O94906 794 802 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.049361 71.692 By MS/MS By MS/MS 3.33 1.25 1 1 1 2 1 30246000 0 11452000 18794000 10115 305 10651 43428;43429;43430 36136;36137 36136 2 0 4807800 4247000 NIAPHTVVDSIMTALSPYASLAVNNIR SVQSVDYYCDTIILRNIAPHTVVDSIMTAL TALSPYASLAVNNIRLIKDKQTQQNRGFAF R N I I R L 4 1 3 1 0 0 0 0 1 3 2 0 1 0 2 3 2 0 1 3 0 0 27 0 2866.5011 P52756 P52756 237 263 RBM5 RNA-binding protein 5 yes yes 3 2.6128E-38 135.8 By MS/MS 2 0 1 1 5483600 0 0 5483600 10116 912 10652 43431 36138 36138 1 0 0 1239200 NIAPNISR CKPRPLHKTCSLFMRNIAPNISRAEIISLC TCSLFMRNIAPNISRAEIISLCKRYPGFMR R N I S R A 1 1 2 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 8 0 883.48756 Q9BXP5 Q9BXP5 427 434 SRRT Serrate RNA effector molecule homolog yes yes 2 0.0020946 107.59 By MS/MS 2 0 1 1 0 0 0 0 10117 1929 10653 43432 36139 36139 1 0 0 0 NIDDGTSDRPYSHALVAGIDR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL SDRPYSHALVAGIDRYPRKVTAAMGKKKIA K N I D R Y 2 2 1 4 0 0 0 2 1 2 1 0 0 0 1 2 1 0 1 1 0 0 21 1 2271.088 P61353 P61353 28 48 RPL27 60S ribosomal protein L27 yes yes 3;4 3.253E-14 122.19 By MS/MS 7.5 0.5 1 1 2 167420000 0 0 167420000 10118 993 10654 43433;43434 36140;36141 36141 1 0 0 26935000 NIDDGTSDRPYSHALVAGIDRYPR VLAGRYSGRKAVIVKNIDDGTSDRPYSHAL PYSHALVAGIDRYPRKVTAAMGKKKIAKRS K N I P R K 2 3 1 4 0 0 0 2 1 2 1 0 0 0 2 2 1 0 2 1 0 0 24 2 2687.3052 P61353 P61353 28 51 RPL27 60S ribosomal protein L27 yes yes 5 3.3348E-25 167.73 By MS/MS 7.5 0.5 1 1 2 26033000 0 0 26033000 10119 993 10655 43435;43436 36142 36142 1 0 0 4068900 NIDEHANEDVER ITNGKSFENISKWLRNIDEHANEDVERMLL WLRNIDEHANEDVERMLLGNKCDMDDKRVV R N I E R M 1 1 2 2 0 0 3 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1439.6277 P61026 P61026 106 117 RAB10 Ras-related protein Rab-10 yes yes 3 0.011273 70.089 By MS/MS 7 0 1 1 6952700 0 0 6952700 10120 976 10656 43437 36143 36143 1 0 0 1233700 NIDNPALADIYTEHAHQVVVAK GNNFLYTNGKCVILRNIDNPALADIYTEHA ADIYTEHAHQVVVAKYAPSGFYIASGDVSG R N I A K Y 4 0 2 2 0 1 1 0 2 2 1 1 0 0 1 0 1 0 1 3 0 0 22 0 2417.2339 O75083 O75083 44 65 WDR1 WD repeat-containing protein 1 yes yes 3;4 4.3497E-11 102.6 By MS/MS 4 0 2 2 17689000 0 17689000 0 10121 241 10657 43438;43439 36144;36145 36145 2 0 5870500 0 NIEDVIAQGIGK DDDRLNKVISELNGKNIEDVIAQGIGKLAS NGKNIEDVIAQGIGKLASVPAGGAVAVSAA K N I G K L 1 0 1 1 0 1 1 2 0 3 0 1 0 0 0 0 0 0 0 1 0 0 12 0 1255.6772 P05387 P05387 50 61 RPLP2 60S acidic ribosomal protein P2 yes yes 2;3 5.221E-05 145.9 By MS/MS By MS/MS By MS/MS 8.69 0.991 2 3 5 3 2 6 5 1416700000 59695000 292460000 1064600000 10122 431 10658 43440;43441;43442;43443;43444;43445;43446;43447;43448;43449;43450;43451;43452 36146;36147;36148;36149;36150;36151;36152;36153;36154;36155;36156;36157;36158;36159 36153 13 34370000 326990000 309930000 NIEIDSPYEISR IDSLTVKIILPEGAKNIEIDSPYEISRAPD GAKNIEIDSPYEISRAPDELHYTYLDTFGR K N I S R A 0 1 1 1 0 0 2 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 12 0 1434.6991 P04843 P04843 380 391 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.00015062 135.86 By matching By MS/MS 2.5 0.5 1 1 1 1 15241000 5194800 0 10047000 10123 419 10659 43453;43454 36160 36160 1 6259100 0 1948600 NIEMTQEDVR DRGPVLEALVARAIRNIEMTQEDVRLIGLS ARAIRNIEMTQEDVRLIGLSATLPNYEDVA R N I V R L 0 1 1 1 0 1 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 10 0 1233.566 O75643 O75643 638 647 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00020867 141.52 By MS/MS By MS/MS 1 0 4 2 2 114650000 0 53228000 61419000 10124 277 10660;10661 43455;43456;43457;43458 36161;36162;36163;36164 36163 112 4 0 26017000 13234000 NIEQYFPVLK RKGISPMNRPPLSDKNIEQYFPVLKRKANL PLSDKNIEQYFPVLKRKANLLRQNEGQRKP K N I L K R 0 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 1 1 0 0 10 0 1249.6707 Q96QD9 Q96QD9 129 138 FYTTD1 UAP56-interacting factor yes yes 2 0.017414 84.476 By MS/MS By MS/MS 6 0 2 1 1 6695600 0 1170700 5524900 10125 1824 10662 43459;43460 36165;36166 36165 2 0 405260 826590 NIETIINTFHQYSVK ______________________________ NIETIINTFHQYSVKLGHPDTLNQGEFKEL R N I V K L 0 0 2 0 0 1 1 0 1 3 0 1 0 1 0 1 2 0 1 1 0 0 15 0 1805.9312 P06702 P06702 11 25 S100A9 Protein S100-A9 yes yes 2;3 2.6768E-89 250.69 By MS/MS By MS/MS By MS/MS 4.92 3.17 4 4 3 1 2 2 1 1 4 2 12 6 6 138150000 76101000 13417000 48634000 10126 445 10663 43461;43462;43463;43464;43465;43466;43467;43468;43469;43470;43471;43472;43473;43474;43475;43476;43477;43478;43479;43480;43481;43482;43483;43484 36167;36168;36169;36170;36171;36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182;36183;36184;36185;36186;36187 36170 21 59684000 5691000 14114000 NIFAILQSVK TRTTILQSTGKNFSKNIFAILQSVKAREEG KNFSKNIFAILQSVKAREEGRAPEQRPAPN K N I V K A 1 0 1 0 0 1 0 0 0 2 1 1 0 1 0 1 0 0 0 1 0 0 10 0 1131.6652 Q6P1J9 Q6P1J9 248 257 CDC73 Parafibromin yes yes 2 0.0014824 108.98 By matching By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 1 1 4 17266000 1031500 7319600 8915100 10127 1486 10664 43485;43486;43487;43488;43489;43490 36188;36189 36188 2 804760 2429100 1608300 NIFFSPLSLSAALGMVR CFDLFQEIGKDDRHKNIFFSPLSLSAALGM FFSPLSLSAALGMVRLGARSDSAHQIDEVL K N I V R L 2 1 1 0 0 0 0 1 0 1 3 0 1 2 1 3 0 0 0 1 0 0 17 0 1821.9811 Q96P63 Q96P63 27 43 SERPINB12 Serpin B12 yes yes 2 0.0025301 84.289 By MS/MS 8.5 0.5 1 1 2 625370 625370 0 0 10128 1816 10665 43491;43492 36190 36190 1 457470 0 0 NIHHHQILAINR VDKFLLYQHFSCNIRNIHHHQILAINRGEN NIRNIHHHQILAINRGENLKVLTVKVNISD R N I N R G 1 1 2 0 0 1 0 0 3 3 1 0 0 0 0 0 0 0 0 0 0 0 12 0 1464.8062 Q8N5C6 Q8N5C6 430 441 SRBD1 S1 RNA-binding domain-containing protein 1 yes yes 3 0.001817 94.465 By MS/MS 1.5 0.5 1 1 2 5269300 0 0 5269300 10129 1606 10666 43493;43494 36191 36191 1 0 0 1173600 NIHLNLDR EEDIHDKFAEYGEIKNIHLNLDRRTGYLKG AEYGEIKNIHLNLDRRTGYLKGYTLVEYET K N I D R R 0 1 2 1 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 8 0 993.53558 Q9Y5S9 Q9Y5S9 101 108 RBM8A RNA-binding protein 8A yes yes 2 0.020114 84.227 By MS/MS By MS/MS 7 0 2 1 1 90406000 0 23860000 66547000 10130 2302 10667 43495;43496 36192;36193 36193 2 0 13700000 11808000 NIHPIYNIK SGLKEVRKVVLDTMKNIHPIYNIKSLMIKR VLDTMKNIHPIYNIKSLMIKRELAKDSELR K N I I K S 0 0 2 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0 1 0 0 0 9 0 1110.6186 Q13601 Q13601 212 220 KRR1 KRR1 small subunit processome component homolog yes yes 2 0.0014612 108.09 By MS/MS By MS/MS 5 0 2 1 1 45528000 0 15139000 30389000 10131 1261 10668 43497;43498 36194;36195 36194 2 0 3902300 4238700 NIIHGSDSVESAEK KPGTIRGDFCIQVGRNIIHGSDSVESAEKE RNIIHGSDSVESAEKEIGLWFHPEELVDYT R N I E K E 1 0 1 1 0 0 2 1 1 2 0 1 0 0 0 3 0 0 0 1 0 0 14 0 1484.7107 P15531 P15531 115 128 NME1 Nucleoside diphosphate kinase A yes yes 2;3 0.0005112 145.29 By MS/MS 8.75 0.829 2 1 1 4 27233000 0 0 27233000 10132 570 10669 43499;43500;43501;43502 36196;36197 36197 2 0 0 5350500 NIILEEGK KRKKAVLFCLSEDKKNIILEEGKEILVGDV CLSEDKKNIILEEGKEILVGDVGQTVDDPY K N I G K E 0 0 1 0 0 0 2 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 8 0 914.5073 P23528 P23528 46 53 CFL1 Cofilin-1 yes yes 2 0.021422 83.206 By MS/MS 8.33 1.25 1 1 1 3 99405000 0 0 99405000 10133 645 10670 43503;43504;43505 36198 36198 1 0 0 59030000 NIILEEGKEILVGDVGQTVDDPYATFVK KRKKAVLFCLSEDKKNIILEEGKEILVGDV DVGQTVDDPYATFVKMLPDKDCRYALYDAT K N I V K M 1 0 1 3 0 1 3 3 0 3 2 2 0 1 1 0 2 0 1 4 0 0 28 1 3061.5859 P23528 P23528 46 73 CFL1 Cofilin-1 yes yes 3 3.5689E-07 66.501 By MS/MS 8 0 1 1 14983000 0 0 14983000 10134 645 10671 43506 36199 36199 1 0 0 2297000 NIINEEDADTMR KYLCECQFDDNLKFKNIINEEDADTMRLQP KFKNIINEEDADTMRLQPIGRDKDGLMYWY K N I M R L 1 1 2 2 0 0 2 0 0 2 0 0 1 0 0 0 1 0 0 0 0 0 12 0 1419.63 Q96T23 Q96T23 139 150 RSF1 Remodeling and spacing factor 1 yes yes 2 4.6532E-05 147.12 By MS/MS By MS/MS 1 0 2 1 1 27954000 0 6771000 21183000 10135 1837 10672 43507;43508 36200;36201 36200 2 0 3309600 4564200 NIIQQAIDAGEVPSYNAFVK ESVLCVQYTEEPRIRNIIQQAIDAGEVPSY AIDAGEVPSYNAFVKESKQKMNARKRRAQE R N I V K E 3 0 2 1 0 2 1 1 0 3 0 1 0 1 1 1 0 0 1 2 0 0 20 0 2176.1164 Q8WXX5 Q8WXX5 161 180 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2;3 4.8339E-07 103.21 By MS/MS By MS/MS 6.33 0.471 4 2 2 4 109870000 0 19173000 90700000 10136 1698 10673 43509;43510;43511;43512;43513;43514 36202;36203;36204;36205 36202 4 0 6636900 13609000 NIITEGNGTESLNSVITSMK FYETKEESYSPSKDRNIITEGNGTESLNSV GNGTESLNSVITSMKTGELEKETAPLRKDA R N I M K T 0 0 3 0 0 0 2 2 0 3 1 1 1 0 0 3 3 0 0 1 0 0 20 0 2107.0467 Q96T23 Q96T23 479 498 RSF1 Remodeling and spacing factor 1 yes yes 2 7.7627E-46 212.87 By MS/MS 1 0 1 1 4038500 0 0 4038500 10137 1837 10674 43515 36206 36206 1 0 0 870160 NIITNLSK NFFKDWRKEMTNEEKNIITNLSKCDFTQMS EMTNEEKNIITNLSKCDFTQMSQYFKAQTE K N I S K C 0 0 2 0 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 8 0 901.52328 P11387 P11387 292 299 TOP1 DNA topoisomerase 1 yes yes 2 0.010304 93.374 By matching By MS/MS By MS/MS 2.43 0.904 1 3 2 1 1 2 4 298740000 10356000 93111000 195270000 10138 523 10675 43516;43517;43518;43519;43520;43521;43522 36207;36208;36209;36210;36211 36210 5 12478000 40750000 40705000 NIKPLLSTFSQVPGSENEKK RTRFTKSTREALNNKNIKPLLSTFSQVPGS LSTFSQVPGSENEKKCTLDQAFRGILEEEI K N I K K C 0 0 2 0 0 1 2 1 0 1 2 3 0 1 2 3 1 0 0 1 0 0 20 2 2215.1848 Q96FV9 Q96FV9 29 48 THOC1 THO complex subunit 1 yes yes 3 0.016973 44.953 By MS/MS 3 0 1 1 11899000 0 0 11899000 10139 1783 10676 43523 36212 36212 1 0 0 2307700 NILAEQLQAETELFAEAEEMR LEEMERKHQQLLEEKNILAEQLQAETELFA LQAETELFAEAEEMRARLAAKKQELEEILH K N I M R A 4 1 1 0 0 2 6 0 0 1 3 0 1 1 0 0 1 0 0 0 0 0 21 0 2434.1686 P35580 P35580 890 910 MYH10 Myosin-10 yes yes 2 1.8618E-28 192.4 By MS/MS 1.5 0.5 1 1 2 4146300 0 0 4146300 10140 753 10677 43524;43525 36213 36213 1 0 0 906970 NILDRQDPPSVVVTSHQAPGEK EECPATLRKYLKYSKNILDRQDPPSVVVTS PPSVVVTSHQAPGEKKKLKCLAYDFYPGKI K N I E K K 1 1 1 2 0 2 1 1 1 1 1 1 0 0 3 2 1 0 0 3 0 0 22 1 2386.2241 P25311 P25311 199 220 AZGP1 Zinc-alpha-2-glycoprotein yes yes 4 0.00014296 70.352 By MS/MS 8 1.41 1 1 1 1 1 5 26127000 26127000 0 0 10141 656 10678 43526;43527;43528;43529;43530 36214;36215;36216;36217 36216 4 27744000 0 0 NILDSKPTANK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VVKKNILDSKPTANKKCDLISIPKKTTDTA K N I N K K 1 0 2 1 0 0 0 0 0 1 1 2 0 0 1 1 1 0 0 0 0 0 11 1 1199.651 Q9ULV4 Q9ULV4 408 418 CORO1C Coronin-1C yes yes 2;3 0.0025311 123.35 By MS/MS 5 0 2 2 6053000 0 6053000 0 10142 2192 10679 43531;43532 36218;36219 36219 2 0 1560300 0 NILDSKPTANKK GYIPGKNRDLKVVKKNILDSKPTANKKCDL VKKNILDSKPTANKKCDLISIPKKTTDTAS K N I K K C 1 0 2 1 0 0 0 0 0 1 1 3 0 0 1 1 1 0 0 0 0 0 12 2 1327.746 Q9ULV4 Q9ULV4 408 419 CORO1C Coronin-1C yes yes 3 0.012764 75.479 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 9990500 0 2745200 7245300 10143 2192 10680 43533;43534;43535;43536 36220;36221 36220 2 0 911050 1158500 NILETLLQMK ADMEEYIWENSSSERNILETLLQMKAAEKN SSSERNILETLLQMKAAEKNMEINKEELLG R N I M K A 0 0 1 0 0 1 1 0 0 1 3 1 1 0 0 0 1 0 0 0 0 0 10 0 1201.674 P82673 P82673 261 270 MRPS35 28S ribosomal protein S35, mitochondrial yes yes 2 0.006308 95.099 By MS/MS 5.5 0.5 1 1 2 3167400 0 3167400 0 10144 1098 10681 43537;43538 36222 36222 1 0 970750 0 NILFVITKPDVYK RQVTGVTRVTIRKSKNILFVITKPDVYKSP SKNILFVITKPDVYKSPASDTYIVFGEAKI K N I Y K S 0 0 1 1 0 0 0 0 0 2 1 2 0 1 1 0 1 0 1 2 0 0 13 1 1548.8916 E9PAV3;Q13765;Q9BZK3 E9PAV3 1964 1976 NACA;NACAP1 Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein yes no 2;3 0.0055065 118.28 By matching By MS/MS 6.33 0.471 4 2 2 4 52384000 0 3868000 48516000 10145 102 10682 43539;43540;43541;43542;43543;43544 36223;36224 36223 2 0 1339000 7413700 NILGGTVFR FKLKKMWKSPNGTIRNILGGTVFREPIICK PNGTIRNILGGTVFREPIICKNIPRLVPGW R N I F R E 0 1 1 0 0 0 0 2 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 975.55016 P48735;O75874 P48735 141 149 IDH2;IDH1 Isocitrate dehydrogenase [NADP], mitochondrial;Isocitrate dehydrogenase [NADP] cytoplasmic yes no 2 0.0010401 109.86 By MS/MS 5 0 1 1 3324500 0 0 3324500 10146 849 10683 43545 36225 36225 1 0 0 463710 NILLTIGSYK YLKAMLSTGFKIPKKNILLTIGSYKNKSEL KIPKKNILLTIGSYKNKSELLPTVRLLESL K N I Y K N 0 0 1 0 0 0 0 1 0 2 2 1 0 0 0 1 1 0 1 0 0 0 10 0 1120.6492 P27708 P27708 1314 1323 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.00099901 110.87 By MS/MS 1.5 0.5 1 1 2 5804300 0 5804300 0 10147 681 10684 43546;43547 36226 36226 1 0 2784600 0 NILMYGPPGTGK AIATRNTKKNRSLYRNILMYGPPGTGKTLF LYRNILMYGPPGTGKTLFAKKLALHSGMDY R N I G K T 0 0 1 0 0 0 0 3 0 1 1 1 1 0 2 0 1 0 1 0 0 0 12 0 1246.638 Q9NVI7 Q9NVI7 395 406 ATAD3A ATPase family AAA domain-containing protein 3A yes yes 2 0.0087289 96.342 By MS/MS 3 0 1 1 32913000 0 0 32913000 10148 2066 10685 43548 36227 36227 1 0 0 6383500 NILSVVGTDALK TLFGEGPAERRERLRNILSVVGTDALKKTK RLRNILSVVGTDALKKTKKDDEKSKKSKEE R N I L K K 1 0 1 1 0 0 0 1 0 1 2 1 0 0 0 1 1 0 0 2 0 0 12 0 1228.7027 O43172 O43172 135 146 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2 0.029033 78.759 By MS/MS 4 0 1 1 6576000 0 6576000 0 10149 189 10686 43549 36228 36228 1 0 2182300 0 NILSVVGTDALKK TLFGEGPAERRERLRNILSVVGTDALKKTK LRNILSVVGTDALKKTKKDDEKSKKSKEEY R N I K K T 1 0 1 1 0 0 0 1 0 1 2 2 0 0 0 1 1 0 0 2 0 0 13 1 1356.7977 O43172 O43172 135 147 PRPF4 U4/U6 small nuclear ribonucleoprotein Prp4 yes yes 2;3 0.0005467 138.22 By MS/MS By MS/MS 3.6 0.49 2 3 3 2 31009000 0 24232000 6776600 10150 189 10687 43550;43551;43552;43553;43554 36229;36230;36231 36229 3 0 8138600 1167800 NILTSNNIDVK ARNPNLPPETVDSLKNILTSNNIDVKKMTV DSLKNILTSNNIDVKKMTVTDQVNCPKLS_ K N I V K K 0 0 3 1 0 0 0 0 0 2 1 1 0 0 0 1 1 0 0 1 0 0 11 0 1229.6616 P05090 P05090 165 175 APOD Apolipoprotein D yes yes 2 0.049681 73.885 By MS/MS By matching 9.67 0.471 1 2 2 1 26626000 22097000 0 4528700 10151 423 10688 43555;43556;43557 36232 36232 1 26367000 0 9904700 NINAYVVFK KKLAAIKRKIHPDQKNINAYVVFKEESAAT IHPDQKNINAYVVFKEESAATQALKRNGAQ K N I F K E 1 0 2 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 2 0 0 9 0 1066.5811 P42696 P42696 243 251 RBM34 RNA-binding protein 34 yes yes 2 0.030774 77.058 By MS/MS 4 0 1 1 2364200 0 2364200 0 10152 807 10689 43558 36233 36233 1 0 784590 0 NINIGDISIK AVSAVKNMNLPEIPRNINIGDISIKVPNLP PEIPRNINIGDISIKVPNLPSFK_______ R N I I K V 0 0 2 1 0 0 0 1 0 4 0 1 0 0 0 1 0 0 0 0 0 0 10 0 1085.6081 Q92572 Q92572 176 185 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 0.00077919 113.66 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 28788000 0 4736700 24051000 10153 1708 10690 43559;43560;43561 36234;36235;36236 36235 3 0 2719800 3980000 NINLIVQK TLLSGEPEVQYVALRNINLIVQKRPEILKQ VQYVALRNINLIVQKRPEILKQEIKVFFVK R N I Q K R 0 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 8 0 940.57057 P63010;Q10567 P63010 305 312 AP2B1;AP1B1 AP-2 complex subunit beta;AP-1 complex subunit beta-1 no no 1;2 0.00090435 134.85 By matching By MS/MS By MS/MS 2 0.632 1 3 1 1 1 3 35041000 2136000 10790000 22114000 10154 1057;1193 10691 43562;43563;43564;43565;43566 36237;36238;36239 36239 2 2136000 4859000 4840700 NINTFVETPVQK GKAMDTPKPAVSDEKNINTFVETPVQKLDL DEKNINTFVETPVQKLDLLGNLPGSKRQPQ K N I Q K L 0 0 2 0 0 1 1 0 0 1 0 1 0 1 1 0 2 0 0 2 0 0 12 0 1388.73 P46013 P46013 2399 2410 MKI67 Antigen KI-67 yes yes 2 0.00015443 135.55 By MS/MS By MS/MS 2 0 2 1 1 12414000 0 4828900 7585400 10155 821 10692 43567;43568 36240;36241 36240 2 0 2174500 1714200 NIPGITLLNVSK CIIYNEDNGIIKAFRNIPGITLLNVSKLNI AFRNIPGITLLNVSKLNILKLAPGGHVGRF R N I S K L 0 0 2 0 0 0 0 1 0 2 2 1 0 0 1 1 1 0 0 1 0 0 12 0 1267.75 P36578 P36578 223 234 RPL4 60S ribosomal protein L4 yes yes 2 3.2389E-05 150.15 By MS/MS By MS/MS By MS/MS 4.82 3.09 3 2 2 2 2 1 1 2 2 1 7 9 984050000 3311500 675580000 305160000 10156 762 10693 43569;43570;43571;43572;43573;43574;43575;43576;43577;43578;43579;43580;43581;43582;43583;43584;43585 36242;36243;36244;36245;36246;36247;36248;36249;36250;36251;36252;36253;36254;36255;36256;36257;36258;36259 36253 18 3311500 211250000 75950000 NIPGPHMVLVPK TLQTISLLGYMKHYRNIPGPHMVLVPKSTL HYRNIPGPHMVLVPKSTLHNWMSEFKRWVP R N I P K S 0 0 1 0 0 0 0 1 1 1 1 1 1 0 3 0 0 0 0 2 0 0 12 0 1300.7326 O60264;P28370 O60264 227 238 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2;3 0.054096 72.042 By MS/MS 2 0.707 1 2 1 4 23017000 0 23017000 0 10157 223;693 10694 43586;43587;43588;43589 36260;36261 36260 2 0 10418000 0 NIPMLFVR IDEETYEEIYKSTKRNIPMLFVRGDGVVLV IYKSTKRNIPMLFVRGDGVVLVAPPLRVG_ R N I V R G 0 1 1 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 0 1 0 0 8 0 988.55281 P62310 P62310 81 88 LSM3 U6 snRNA-associated Sm-like protein LSm3 yes yes 2 0.034304 76.847 By MS/MS By MS/MS By MS/MS 8.83 0.687 2 3 1 1 2 3 62303000 3021300 9049900 50231000 10158 1020 10695 43590;43591;43592;43593;43594;43595 36262;36263;36264 36264 3 1695900 7117400 16208000 NIPMTLELLQSTR KKNAAGALDLLKELKNIPMTLELLQSTRIG LKNIPMTLELLQSTRIGMSVNAIRKQSTDE K N I T R I 0 1 1 0 0 1 1 0 0 1 3 0 1 0 1 1 2 0 0 0 0 0 13 0 1514.8127 P23193 P23193 33 45 TCEA1 Transcription elongation factor A protein 1 yes yes 2 0.00040567 124.67 By matching By MS/MS By MS/MS 6 0 3 1 1 1 17122000 912060 4385200 11825000 10159 637 10696 43596;43597;43598 36265;36266 36265 2 1214400 1518000 1769100 NIPPYFVALVPQEEELDDQK LEKEVAALCRYTPRRNIPPYFVALVPQEEE FVALVPQEEELDDQKIQVTPPGFQLVFLPF R N I Q K I 1 0 1 2 0 2 3 0 0 1 2 1 0 1 3 0 0 0 1 2 0 0 20 0 2343.1634 P12956 P12956 405 424 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 1.2388E-05 92.939 By MS/MS 2.5 0.5 2 2 4 26367000 0 0 26367000 10160 541 10697 43599;43600;43601;43602 36267;36268 36268 2 0 0 5240700 NIQDTSDLDAIAK PPCDVVIKAVADYVRNIQDTSDLDAIAKDV VRNIQDTSDLDAIAKDVFQHSQSRTDDKVI R N I A K D 2 0 1 3 0 1 0 0 0 2 1 1 0 0 0 1 1 0 0 0 0 0 13 0 1402.694 Q9NZB2 Q9NZB2 292 304 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 0.013519 84.507 By MS/MS 1.5 0.5 1 1 2 17780000 0 0 17780000 10161 2101 10698 43603;43604 36269 36269 1 0 0 3980200 NIQGTITGDILPR SFLPQNKEEIERTIKNIQGTITGDILPRLH IKNIQGTITGDILPRLHKCLASTTKREEEH K N I P R L 0 1 1 1 0 1 0 2 0 3 1 0 0 0 1 0 2 0 0 0 0 0 13 0 1396.7674 O75691 O75691 1778 1790 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00034213 141.95 By MS/MS By MS/MS 1 0 2 1 1 7937200 0 3810800 4126400 10162 280 10699 43605;43606 36270;36271 36270 1 0 1862600 889100 NIQQLIELVR CLLENIRNGLSNQNKNIQQLIELVRRL___ SNQNKNIQQLIELVRRL_____________ K N I V R R 0 1 1 0 0 2 1 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 10 0 1224.719 Q8TCY9 Q8TCY9 920 929 URGCP Up-regulator of cell proliferation yes yes 2 0.00068168 114.89 By MS/MS 3 0.816 1 1 1 3 4418300 0 4418300 0 10163 1660 10700 43607;43608;43609 36272 36272 1 0 1648100 0 NIRDDEGFIIR FRLTIPRKSKLAVHRNIRDDEGFIIRHFAG AVHRNIRDDEGFIIRHFAGAVCYETTQFVE R N I I R H 0 2 1 2 0 0 1 1 0 3 0 0 0 1 0 0 0 0 0 0 0 0 11 1 1346.6943 Q9UM54 Q9UM54 570 580 MYO6 Unconventional myosin-VI yes yes 3 0.041539 78.043 By MS/MS 2 0 1 1 4263300 0 4263300 0 10164 2198 10701 43610 36273 36273 0 0 1919800 0 NISAINFHSVVEK QFLQFSLIQCRKEFKNISAINFHSVVEKYV FKNISAINFHSVVEKYVSEFFKRGFGSGKR K N I E K Y 1 0 2 0 0 0 1 0 1 2 0 1 0 1 0 2 0 0 0 2 0 0 13 0 1456.7674 Q9UK61 Q9UK61 544 556 FAM208A Protein FAM208A yes yes 2 0.00030137 136.81 By MS/MS 1 0 1 1 6558600 0 0 6558600 10165 2175 10702 43611 36274 36274 1 0 0 1413200 NISHDTFGTTYGR LSMKMPKALKPKKKKNISHDTFGTTYGRIH KKNISHDTFGTTYGRIHMQKQDLSKLQTRK K N I G R I 0 1 1 1 0 0 0 2 1 1 0 0 0 1 0 1 3 0 1 0 0 0 13 0 1467.6743 Q9H7B2 Q9H7B2 253 265 RPF2 Ribosome production factor 2 homolog yes yes 2 2.3966E-11 178.76 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 46539000 0 13701000 32838000 10166 1991 10703 43612;43613;43614 36275;36276;36277 36277 2 0 4743000 4832200 NISHVHTMDFSPR PSCTVFSNFPVIKNKNISHVHTMDFSPRSG NKNISHVHTMDFSPRSGYFALGNEKGKALM K N I P R S 0 1 1 1 0 0 0 0 2 1 0 0 1 1 1 2 1 0 0 1 0 0 13 0 1539.7252 Q9Y5J1 Q9Y5J1 520 532 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 3 0.0018151 88.275 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 52217000 0 19892000 32325000 10167 2297 10704 43615;43616 36278;36279 36279 2 0 6601400 6269600 NISLHGDGPLR EILDFICRTLSVSSKNISLHGDGPLRLLLL VSSKNISLHGDGPLRLLLLPSIHLEALDLL K N I L R L 0 1 1 1 0 0 0 2 1 1 2 0 0 0 1 1 0 0 0 0 0 0 11 0 1177.6204 Q8IZL8 Q8IZL8 355 365 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 0.001268 111.61 By MS/MS 2.5 0.5 1 1 2 15073000 0 0 15073000 10168 1596 10705 43617;43618 36280 36280 1 0 0 3237800 NISMSVEGDYTYLR PVFGIATPFHIATIKNISMSVEGDYTYLRI KNISMSVEGDYTYLRINFYCPGSALGRNEG K N I L R I 0 1 1 1 0 0 1 1 0 1 1 0 1 0 0 2 1 0 2 1 0 0 14 0 1646.761 Q9Y5B9 Q9Y5B9 556 569 SUPT16H FACT complex subunit SPT16 yes yes 2 3.4378E-07 167.18 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 31870000 0 3588400 28282000 10169 2296 10706 43619;43620;43621 36281;36282;36283 36281 3 0 1615900 6304000 NISSAQIVGPGPKPEASAK TPPSYESVDDINADKNISSAQIVGPGPKPE AQIVGPGPKPEASAKLPSRPADNYDNFVLP K N I A K L 3 0 1 0 0 1 1 2 0 2 0 2 0 0 3 3 0 0 0 1 0 0 19 1 1849.9898 P53990 P53990 291 309 IST1 IST1 homolog yes yes 3 0.0029711 59.512 By MS/MS 5 0 1 1 7340700 0 0 7340700 10170 924 10707 43622 36284 36284 1 0 0 1023900 NITLDDASAPR AVAAPRPDRLVNRLKNITLDDASAPRLMVL NRLKNITLDDASAPRLMVLRQPRGPDNSMG K N I P R L 2 1 1 2 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 11 0 1171.5833 O75534 O75534 759 769 CSDE1 Cold shock domain-containing protein E1 yes yes 2 0.0034733 105.2 By MS/MS 2 0 1 1 15690000 0 15690000 0 10171 271 10708 43623 36285 36285 1 0 7065200 0 NITLWLK RARSIYERALDVDYRNITLWLKYAEMEMKN RALDVDYRNITLWLKYAEMEMKNRQVNHAR R N I L K Y 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 1 1 0 0 0 0 7 0 886.52764 Q9BZJ0 Q9BZJ0 275 281 CRNKL1 Crooked neck-like protein 1 yes yes 2 0.044152 79.307 By MS/MS 3 0 1 1 5835600 0 5835600 0 10172 1944 10709 43624 36286 36286 1 0 2487700 0 NITRPFEDQTSLEFFSK VYALKKPYGVLYKKKNITRPFEDQTSLEFF TRPFEDQTSLEFFSKKSDCSLFMFGSHNKK K N I S K K 0 1 1 1 0 1 2 0 0 1 1 1 0 3 1 2 2 0 0 0 0 0 17 1 2058.0058 Q9H7B2 Q9H7B2 67 83 RPF2 Ribosome production factor 2 homolog yes yes 2;3 7.2543E-05 147.1 By MS/MS By MS/MS 5.75 0.433 1 3 1 3 58608000 0 7018600 51589000 10173 1991 10710 43625;43626;43627;43628 36287;36288 36288 2 0 2429600 7631000 NITYLPAGQSVLLQLPQ LEAAEDIAYQLSRSRNITYLPAGQSVLLQL TYLPAGQSVLLQLPQ_______________ R N I P Q - 1 0 1 0 0 3 0 1 0 1 4 0 0 0 2 1 1 0 1 1 0 0 17 0 1854.0251 P35232 P35232 256 272 PHB Prohibitin yes yes 2 0.023713 60.255 By matching By MS/MS 6 0 2 1 1 17130000 547550 0 16582000 10174 740 10711 43629;43630 36289 36289 1 729070 0 2480800 NIVEAAAVR RCVPKDKAIKKFVIRNIVEAAAVRDISEAS KKFVIRNIVEAAAVRDISEASVFDAYVLPK R N I V R D 3 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 9 0 941.52943 P62854;Q5JNZ5 P62854 43 51 RPS26;RPS26P11 40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1 yes no 2 0.0007258 131.03 By MS/MS By MS/MS 8.5 1.26 2 1 1 2 3 3 294880000 0 69854000 225020000 10175 1040 10712 43631;43632;43633;43634;43635;43636 36290;36291;36292;36293;36294 36294 5 0 165300000 99925000 NIVLSGGSTMFR VIQNCPIDVRRPLYKNIVLSGGSTMFRDFG LYKNIVLSGGSTMFRDFGRRLQRDLKRTVD K N I F R D 0 1 1 0 0 0 0 2 0 1 1 0 1 1 0 2 1 0 0 1 0 0 12 0 1280.6547 P61158 P61158 318 329 ACTR3 Actin-related protein 3 yes yes 2 9.0348E-05 140.75 By MS/MS 5 0 1 1 58562000 0 58562000 0 10176 980 10713 43637 36295 36295 1 0 15096000 0 NIVLTGGNSLFPGFR SIQNLPEEMQPHFFKNIVLTGGNSLFPGFR NIVLTGGNSLFPGFRDRVYSEVRCLTPTDY K N I F R D 0 1 2 0 0 0 0 3 0 1 2 0 0 2 1 1 1 0 0 1 0 0 15 0 1590.8518 Q9GZN1 Q9GZN1 316 330 ACTR6 Actin-related protein 6 yes yes 2 0.0003481 118.28 By MS/MS 5 0 1 1 1696800 0 1696800 0 10177 1950 10714 43638 36296 36296 1 0 437380 0 NIVLYDMR NPIETFLLGSCASDRNIVLYDMRQATPLKK GSCASDRNIVLYDMRQATPLKKVILDMRTN R N I M R Q 0 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 8 0 1022.5219 Q9NV06 Q9NV06 220 227 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 2 0.0022767 109.01 By matching By MS/MS 3 1.41 1 1 1 1 1 2 3 23421000 0 3142800 20278000 10178 2062 10715 43639;43640;43641;43642;43643 36297;36298 36297 2 0 1479900 3082800 NIVPGWLQR QQHQGILSRVTESVKNIVPGWLQRYFNKNE VTESVKNIVPGWLQRYFNKNEDVCSCSTDT K N I Q R Y 0 1 1 0 0 1 0 1 0 1 1 0 0 0 1 0 0 1 0 1 0 0 9 0 1081.6033 P49790 P49790 49 57 NUP153 Nuclear pore complex protein Nup153 yes yes 2 0.0023247 104.45 By matching By MS/MS 2.25 1.64 2 1 1 1 3 8059400 836010 0 7223400 10179 870 10716 43644;43645;43646;43647 36299 36299 1 836010 0 1511300 NIVQSTEHLHEDNGDVEVR REDKVIPVTRSLRARNIVQSTEHLHEDNGD STEHLHEDNGDVEVRRSCRIRSRYSGVNQS R N I V R R 0 1 2 2 0 1 3 1 2 1 1 0 0 0 0 1 1 0 0 3 0 0 19 0 2190.0301 Q6PL18 Q6PL18 137 155 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 3 6.9062E-05 91.518 By MS/MS 1.5 0.5 1 1 2 22765000 0 0 22765000 10180 1498 10717 43648;43649 36300 36300 1 0 0 4956400 NIVQSTEHLHEDNGDVEVRR REDKVIPVTRSLRARNIVQSTEHLHEDNGD TEHLHEDNGDVEVRRSCRIRSRYSGVNQSM R N I R R S 0 2 2 2 0 1 3 1 2 1 1 0 0 0 0 1 1 0 0 3 0 0 20 1 2346.1312 Q6PL18 Q6PL18 137 156 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 4 0.0013896 59.372 By MS/MS 1 0 1 1 11345000 0 0 11345000 10181 1498 10718 43650 36301 36301 1 0 0 2444500 NIWDSEEYASVLQLLR LGRQIRELYCTCLEKNIWDSEEYASVLQLL IWDSEEYASVLQLLRMLAKDELMTILEKCF K N I L R M 1 1 1 1 0 1 2 0 0 1 3 0 0 0 0 2 0 1 1 1 0 0 16 0 1934.9738 Q9UBD5 Q9UBD5 446 461 ORC3 Origin recognition complex subunit 3 yes yes 2 0.066876 53.252 By MS/MS 3 0 1 1 1422600 0 0 1422600 10182 2130 10719 43651 36302 36302 1 0 0 275910 NIYAFMGTPVQK GKAMHTPKPAVSGEKNIYAFMGTPVQKLDL GEKNIYAFMGTPVQKLDLTENLTGSKRRLQ K N I Q K L 1 0 1 0 0 1 0 1 0 1 0 1 1 1 1 0 1 0 1 1 0 0 12 0 1367.6908 P46013 P46013 1550 1561 MKI67 Antigen KI-67 yes yes 2 0.0055473 101.97 By MS/MS 1 0 1 1 2019400 0 2019400 0 10183 821 10720 43652 36303 36303 1 0 987050 0 NIYSEELR ENRLQTMKEELDFQKNIYSEELRETKRRHE EELDFQKNIYSEELRETKRRHETRLVEIDN K N I L R E 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 8 0 1022.5033 P02545 P02545 209 216 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 8.9673E-05 147.69 By matching By MS/MS By MS/MS 3.62 1.32 2 2 2 1 1 1 2 5 560720000 1351800 84109000 475260000 10184 387 10721 43653;43654;43655;43656;43657;43658;43659;43660 36304;36305;36306;36307;36308;36309 36307 5 1628700 33481000 87208000 NIYSEELRETK ENRLQTMKEELDFQKNIYSEELRETKRRHE DFQKNIYSEELRETKRRHETRLVEIDNGKQ K N I T K R 0 1 1 0 0 0 3 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 11 1 1380.6885 P02545 P02545 209 219 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.007697 114.4 By matching By MS/MS 3.33 0.471 2 1 1 2 9967200 2565800 7401400 0 10185 387 10722 43661;43662;43663 36310 36310 1 2960400 2864500 0 NIYVLQELDNPGAK VFYGTEKDKNSVNFKNIYVLQELDNPGAKR KNIYVLQELDNPGAKRILELDQFKGQQGQK K N I A K R 1 0 2 1 0 1 1 1 0 1 2 1 0 0 1 0 0 0 1 1 0 0 14 0 1572.8148 P12956 P12956 101 114 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 4.018E-34 210.87 By matching By MS/MS By MS/MS 4.14 2.03 1 3 2 1 1 3 3 175840000 5846500 58937000 111050000 10186 541 10723 43664;43665;43666;43667;43668;43669;43670 36311;36312;36313;36314 36312 3 6745500 25149000 21365000 NKDDELTGF GQNEDLVLTGYQVDKNKDDELTGF______ GYQVDKNKDDELTGF_______________ K N K G F - 0 0 1 2 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 9 1 1037.4666 P01040 P01040 90 98 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 1;2 0.00053082 130.27 By MS/MS By matching 4 2.73 2 1 1 1 1 1 4 3 98734000 92218000 0 6516000 10187 374 10724 43671;43672;43673;43674;43675;43676;43677 36315;36316;36317 36316 2 60483000 0 1289400 NKDGVLVDEFGLPQIPAS ASAPAIPEGVPTDTKNKDGVLVDEFGLPQI GVLVDEFGLPQIPAS_______________ K N K A S - 1 0 1 2 0 1 1 2 0 1 2 1 0 1 2 1 0 0 0 2 0 0 18 1 1897.9785 Q9NZZ3 Q9NZZ3 202 219 CHMP5 Charged multivesicular body protein 5 yes yes 2 0.0042271 94.725 By MS/MS 6 0 1 1 5488900 0 0 5488900 10188 2108 10725 43678 36318 36318 1 0 0 821200 NKDQGTYEDYVEGLR LDFEHFLPMLQTVAKNKDQGTYEDYVEGLR NKDQGTYEDYVEGLRVFDKEGNGTVMGAEI K N K L R V 0 1 1 2 0 1 2 2 0 0 1 1 0 0 0 0 1 0 2 1 0 0 15 1 1785.817 P60660 P60660 80 94 MYL6 Myosin light polypeptide 6 yes yes 2;3 6.4657E-74 249.2 By MS/MS By MS/MS 8.5 0.5 3 3 2 4 97779000 0 13815000 83964000 10189 965 10726 43679;43680;43681;43682;43683;43684 36319;36320;36321;36322;36323;36324 36323 6 0 9461300 20523000 NKEEAAEYAK HKRRRIALKKQRTKKNKEEAAEYAKLLAKR QRTKKNKEEAAEYAKLLAKRMKEAKEKRQE K N K A K L 3 0 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 10 1 1151.5459 P62753 P62753 202 211 RPS6 40S ribosomal protein S6 yes yes 2 9.8622E-29 200.09 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 7844300 0 7844300 0 10190 1032 10727 43685;43686;43687 36325;36326;36327;36328;36329;36330 36326 6 0 2704200 0 NKEPGEIQYLIK YAVEADGDPNAGFEKNKEPGEIQYLIKWKG FEKNKEPGEIQYLIKWKGWSHIHNTWETEE K N K I K W 0 0 1 0 0 1 2 1 0 2 1 2 0 0 1 0 0 0 1 0 0 0 12 1 1430.7769 O14646 O14646 310 321 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 0.041559 53.557 By MS/MS 1 0 1 1 8515600 0 0 8515600 10191 141 10728 43688 36331 36331 1 0 0 1834800 NKEQLSDMMMINK TLQDVVSHSKKLTKKNKEQLSDMMMINKQK KKNKEQLSDMMMINKQKGGLKALSKEKREK K N K N K Q 0 0 2 1 0 1 1 0 0 1 1 2 3 0 0 1 0 0 0 0 0 0 13 1 1580.7361 P46940 P46940 941 953 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2;3 0.0024952 128.88 By MS/MS 1.67 0.471 1 2 3 8447900 0 8447900 0 10192 835 10729 43689;43690;43691 36332;36333 36332 2 0 3829300 0 NKGDSHLNVQVSNFK TEQLTTASFPVGSKKNKGDSHLNVQVSNFK NKGDSHLNVQVSNFKSGKGDSTLQVSSGLN K N K F K S 0 0 3 1 0 1 0 1 1 0 1 2 0 1 0 2 0 0 0 2 0 0 15 1 1685.8485 Q86UE4 Q86UE4 247 261 MTDH Protein LYRIC yes yes 3 0.00027762 96.489 By MS/MS By matching 3.5 1.12 1 1 1 1 3 1 37954000 0 30543000 7410800 10193 1546 10730 43692;43693;43694;43695 36334;36335 36335 2 0 12269000 1033700 NKHEAMITDLEER LTEEEEKSKSLAKLKNKHEAMITDLEERLR LKNKHEAMITDLEERLRREEKQRQELEKTR K N K E R L 1 1 1 1 0 0 3 0 1 1 1 1 1 0 0 0 1 0 0 0 0 0 13 1 1584.7566 P35579 P35579 1023 1035 MYH9 Myosin-9 yes yes 2;3;4 0.0030892 123.95 By MS/MS By MS/MS 1.14 0.35 6 1 6 1 222260000 0 168960000 53300000 10194 752 10731;10732 43696;43697;43698;43699;43700;43701;43702 36336;36337;36338;36339;36340;36341 36337 347 6 0 82355000 11484000 NKLAELEEALQK ADAEQRGELALKDARNKLAELEEALQKAKQ DARNKLAELEEALQKAKQDMARLLREYQEL R N K Q K A 2 0 1 0 0 1 3 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1384.7562 CON__P13647;P13647 CON__P13647 430 441 KRT5 Keratin, type II cytoskeletal 5 yes no 2;3 0.0014733 103.63 By MS/MS 8.75 0.829 2 1 1 4 5785100 5785100 0 0 + 10195 58 10733 43703;43704;43705;43706 36342;36343;36344 36342 3 5085900 0 0 NKLDHYAIIK LRRQPKYPRKSAPRRNKLDHYAIIKFPLTT SAPRRNKLDHYAIIKFPLTTESAMKKIEDN R N K I K F 1 0 1 1 0 0 0 0 1 2 1 2 0 0 0 0 0 0 1 0 0 0 10 1 1213.6819 P62750 P62750 69 78 RPL23A 60S ribosomal protein L23a yes yes 2;3 0.0030739 137.69 By MS/MS By MS/MS 7.25 0.433 3 1 2 2 169930000 0 139630000 30302000 10196 1031 10734 43707;43708;43709;43710 36345;36346;36347;36348 36345 4 0 80174000 5254500 NKLEGLEDALQK ADAEQRGEMALKDAKNKLEGLEDALQKAKQ DAKNKLEGLEDALQKAKQDLARLLKEYQEL K N K Q K A 1 0 1 1 0 1 2 1 0 0 3 2 0 0 0 0 0 0 0 0 0 0 12 1 1356.7249 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 425 436 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 1.1261E-88 258.45 By MS/MS By matching By MS/MS 4.59 2.53 2 3 3 6 1 1 2 2 1 1 13 3 6 388470000 223280000 8294200 156890000 + 10197 68;47;37 10735 43711;43712;43713;43714;43715;43716;43717;43718;43719;43720;43721;43722;43723;43724;43725;43726;43727;43728;43729;43730;43731;43732 36349;36350;36351;36352;36353;36354;36355;36356;36357;36358;36359;36360;36361 36352 12 201910000 3028600 27297000 NKLNDLEDALQQAK SDAEQRGENALKDAKNKLNDLEDALQQAKE KNKLNDLEDALQQAKEDLARLLRDYQELMN K N K A K E 2 0 2 2 0 2 1 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 14 1 1598.8264 P04264;CON__P04264 P04264 442 455 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0 360.32 By MS/MS By MS/MS By MS/MS 5.02 2.75 7 8 7 7 7 8 4 6 5 4 31 13 19 4148500000 3340400000 119060000 689030000 + 10198 413 10736 43733;43734;43735;43736;43737;43738;43739;43740;43741;43742;43743;43744;43745;43746;43747;43748;43749;43750;43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761;43762;43763;43764;43765;43766;43767;43768;43769;43770;43771;43772;43773;43774;43775;43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795 36362;36363;36364;36365;36366;36367;36368;36369;36370;36371;36372;36373;36374;36375;36376;36377;36378;36379;36380;36381;36382;36383;36384;36385;36386;36387;36388;36389;36390;36391;36392;36393;36394;36395;36396;36397;36398;36399;36400;36401;36402;36403;36404;36405;36406;36407;36408;36409;36410;36411;36412;36413;36414;36415;36416;36417;36418;36419;36420;36421;36422;36423;36424;36425;36426;36427;36428 36382 67 3135200000 58944000 134160000 NKLNDLEDALQQAKEDLAR SDAEQRGENALKDAKNKLNDLEDALQQAKE DLEDALQQAKEDLARLLRDYQELMNTKLAL K N K A R L 3 1 2 3 0 2 2 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 19 2 2183.1182 P04264;CON__P04264 P04264 442 460 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 1.9537E-97 257.93 By MS/MS By MS/MS By MS/MS 4.44 2.52 2 2 3 2 2 2 1 2 5 3 8 664000000 511010000 43190000 109800000 + 10199 413 10737 43796;43797;43798;43799;43800;43801;43802;43803;43804;43805;43806;43807;43808;43809;43810;43811 36429;36430;36431;36432;36433;36434;36435;36436;36437;36438;36439;36440;36441 36435 12 391450000 18714000 22729000 NKLNDLEEALQQAK ADAEQRGEHALKDARNKLNDLEEALQQAKE RNKLNDLEEALQQAKEDLARLLRDYQELMN R N K A K E 2 0 2 1 0 2 2 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 14 1 1612.842 CON__P35908;CON__P35908v2;P35908 CON__P35908 446 459 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 3.1604E-280 341.46 By MS/MS By MS/MS By MS/MS 5.26 2.76 6 4 6 4 7 5 5 5 5 3 24 8 18 1671300000 1203800000 40708000 426770000 + 10200 65;66 10738 43812;43813;43814;43815;43816;43817;43818;43819;43820;43821;43822;43823;43824;43825;43826;43827;43828;43829;43830;43831;43832;43833;43834;43835;43836;43837;43838;43839;43840;43841;43842;43843;43844;43845;43846;43847;43848;43849;43850;43851;43852;43853;43854;43855;43856;43857;43858;43859;43860;43861 36442;36443;36444;36445;36446;36447;36448;36449;36450;36451;36452;36453;36454;36455;36456;36457;36458;36459;36460;36461;36462;36463;36464;36465;36466;36467;36468;36469;36470;36471;36472;36473;36474;36475;36476;36477;36478;36479;36480;36481;36482;36483;36484;36485;36486;36487;36488;36489;36490 36456 48 1141100000 18627000 83134000 NKLNDLEEALQQAKEDLAR ADAEQRGEHALKDARNKLNDLEEALQQAKE DLEEALQQAKEDLARLLRDYQELMNVKLAL R N K A R L 3 1 2 2 0 2 3 0 0 0 4 2 0 0 0 0 0 0 0 0 0 0 19 2 2197.1339 CON__P35908;CON__P35908v2;P35908 CON__P35908 446 464 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 4.8979E-157 281.53 By MS/MS By MS/MS By MS/MS 5.3 2.33 2 2 2 1 2 1 4 1 5 193680000 145180000 6038100 42463000 + 10201 65;66 10739 43862;43863;43864;43865;43866;43867;43868;43869;43870;43871 36491;36492;36493;36494;36495;36496;36497;36498 36491 8 111250000 2719000 7495600 NKLQQLPADFGR DFCGLTHLVKLDLSKNKLQQLPADFGRLVN LSKNKLQQLPADFGRLVNLQHLDLLNNKLV K N K G R L 1 1 1 1 0 2 0 1 0 0 2 1 0 1 1 0 0 0 0 0 0 0 12 1 1385.7415 Q96AG4 Q96AG4 72 83 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 3 0.025094 61.932 By MS/MS 6 0 1 1 16776000 0 16776000 0 10202 1751 10740 43872 36499 36499 1 0 5807200 0 NKNPAPPIDAVEQILPTLVR GYLRNLTWTLSNLCRNKNPAPPIDAVEQIL PPIDAVEQILPTLVRLLHHDDPEVLADTCW R N K V R L 2 1 2 1 0 1 1 0 0 2 2 1 0 0 4 0 1 0 0 2 0 0 20 1 2184.2267 P52292 P52292 239 258 KPNA2 Importin subunit alpha-1 yes yes 2;3 2.531E-28 186.15 By MS/MS By MS/MS 4.7 1.27 2 3 2 2 1 5 5 131940000 0 97895000 34044000 10203 903 10741 43873;43874;43875;43876;43877;43878;43879;43880;43881;43882 36500;36501;36502;36503;36504;36505;36506;36507;36508;36509 36501 10 0 32471000 5744100 NKPGPNIESGNEDDDASFK DEFLQSRKGQKKNQKNKPGPNIESGNEDDD PNIESGNEDDDASFKIKTVAQKKAEKKERE K N K F K I 1 0 3 3 0 0 2 2 0 1 0 2 0 1 2 2 0 0 0 0 0 0 19 1 2032.8974 O60841 O60841 206 224 EIF5B Eukaryotic translation initiation factor 5B yes yes 2;3 2.4569E-09 158.93 By MS/MS By MS/MS 2.33 1.33 3 3 1 1 1 2 7 89288000 0 9033700 80254000 10204 236 10742 43883;43884;43885;43886;43887;43888;43889;43890;43891 36510;36511;36512;36513;36514 36511 5 0 4218300 17039000 NKPGPYSSVPPPSAPPPK DSSSDEEEEQKKPMKNKPGPYSSVPPPSAP GPYSSVPPPSAPPPKKSLGTQPPKKAVEKQ K N K P K K 1 0 1 0 0 0 0 1 0 0 0 2 0 0 8 3 0 0 1 1 0 0 18 1 1815.9519 Q14978 Q14978 284 301 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 3 0.005946 56.436 By MS/MS 2.5 0.5 1 1 2 21689000 0 0 21689000 10205 1326 10743 43892;43893 36515;36516;36517 36515 3 0 0 4618400 NKPGPYSSVPPPSAPPPKK DSSSDEEEEQKKPMKNKPGPYSSVPPPSAP PYSSVPPPSAPPPKKSLGTQPPKKAVEKQQ K N K K K S 1 0 1 0 0 0 0 1 0 0 0 3 0 0 8 3 0 0 1 1 0 0 19 2 1944.0469 Q14978 Q14978 284 302 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 3;4 0.011984 47.618 By MS/MS 2.78 1.31 2 2 2 2 1 9 34398000 0 0 34398000 10206 1326 10744 43894;43895;43896;43897;43898;43899;43900;43901;43902 36518;36519;36520;36521 36518 4 0 0 7074100 NKQEMAFYSLPEFEEWK RFLEEFITPIVKVSKNKQEMAFYSLPEFEE QEMAFYSLPEFEEWKSSTPNHKKWKVKYYK K N K W K S 1 0 1 0 0 1 4 0 0 0 1 2 1 2 1 1 0 1 1 0 0 0 17 1 2174.9983 P11388 P11388 583 599 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 8.2544E-36 210.14 By MS/MS 1.5 0.5 2 2 4 63064000 0 0 63064000 10207 524 10745 43903;43904;43905;43906 36522;36523 36523 2 0 0 13720000 NKQEVMISDLEER LAEEEEKAKNLAKIRNKQEVMISDLEERLK IRNKQEVMISDLEERLKKEEKTRQELEKAK R N K E R L 0 1 1 1 0 1 3 0 0 1 1 1 1 0 0 1 0 0 0 1 0 0 13 1 1589.7719 P35580 P35580 1030 1042 MYH10 Myosin-10 yes yes 2;3 0.0001528 161.7 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 91839000 0 45339000 46501000 10208 753 10746 43907;43908;43909;43910 36524;36525;36526 36526 3 0 22161000 10085000 NKQPTPVNIR TTKMSLNERFTNMLKNKQPTPVNIRASMQQ TNMLKNKQPTPVNIRASMQQQQQLASARNR K N K I R A 0 1 2 0 0 1 0 0 0 1 0 1 0 0 2 0 1 0 0 1 0 0 10 1 1165.6568 Q9Y3Y2 Q9Y3Y2 29 38 CHTOP Chromatin target of PRMT1 protein yes yes 2 0.004673 130.27 By MS/MS By matching 6 0 2 1 1 11323000 0 7841600 3481100 10209 2280 10747 43911;43912 36527 36527 1 0 2714500 520820 NKSEDSTKDDIDLDALAAEIEGAGAAK ______________________________ LDALAAEIEGAGAAKEQEPQKSKGKKKKEK K N K A K E 6 0 1 5 0 0 3 2 0 2 2 3 0 0 0 2 1 0 0 0 0 0 27 2 2746.3145 O60841 O60841 7 33 EIF5B Eukaryotic translation initiation factor 5B yes yes 4 6.1297E-07 66.447 By MS/MS 1.5 0.5 1 1 2 7423600 0 0 7423600 10210 236 10748 43913;43914 36528 36528 1 0 0 1637200 NKYEDEINK DSELKNMQDMVEDYRNKYEDEINKRTNAEN MVEDYRNKYEDEINKRTNAENEFVTIKKDV R N K N K R 0 0 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 9 1 1151.5459 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__P48668;P48668;P04264;CON__P04264 P04264 268 276 KRT6A;KRT8;KRT5;KRT6C;KRT1 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 1 no no 2 2.6993E-114 270.57 By MS/MS By MS/MS By MS/MS 4.96 2.79 4 2 2 3 4 3 2 1 2 2 14 2 9 654560000 570820000 6483700 77255000 + 10211 413;49;68;37;47;58 10749 43915;43916;43917;43918;43919;43920;43921;43922;43923;43924;43925;43926;43927;43928;43929;43930;43931;43932;43933;43934;43935;43936;43937;43938;43939 36529;36530;36531;36532;36533;36534;36535;36536;36537;36538;36539;36540;36541;36542;36543;36544;36545;36546;36547;36548;36549;36550;36551 36541 23 529670000 2578700 21204000 NKYEDEINKR DSELKNMQDMVEDYRNKYEDEINKRTNAEN VEDYRNKYEDEINKRTNAENEFVTIKKDVD R N K K R T 0 1 2 1 0 0 2 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 10 2 1307.647 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__H-INV:HIT000016045;CON__P13647;P13647;CON__P48668;P48668;P04264;CON__P04264 P04264 268 277 KRT6A;KRT8;KRT5;KRT6C;KRT1 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 1 no no 2;3 3.7324E-63 233.14 By MS/MS By MS/MS By MS/MS 5.22 2.88 8 6 6 6 6 6 6 6 5 5 23 14 23 15046000000 10458000000 447920000 4140000000 + 10212 413;49;68;37;47;58 10750 43940;43941;43942;43943;43944;43945;43946;43947;43948;43949;43950;43951;43952;43953;43954;43955;43956;43957;43958;43959;43960;43961;43962;43963;43964;43965;43966;43967;43968;43969;43970;43971;43972;43973;43974;43975;43976;43977;43978;43979;43980;43981;43982;43983;43984;43985;43986;43987;43988;43989;43990;43991;43992;43993;43994;43995;43996;43997;43998;43999 36552;36553;36554;36555;36556;36557;36558;36559;36560;36561;36562;36563;36564;36565;36566;36567;36568;36569;36570;36571;36572;36573;36574;36575;36576;36577;36578;36579;36580;36581;36582;36583;36584;36585;36586;36587;36588;36589;36590;36591;36592;36593;36594;36595;36596;36597;36598;36599;36600;36601;36602;36603;36604;36605;36606;36607;36608;36609;36610;36611;36612;36613;36614;36615;36616;36617;36618;36619 36576 68 10021000000 233460000 1171500000 NKYETEINITK AKVRNHYNEEMSNLRNKYETEINITKTTIK SNLRNKYETEINITKTTIKEISMQKEDDSK R N K T K T 0 0 2 0 0 0 2 0 0 2 0 2 0 0 0 0 2 0 1 0 0 0 11 1 1351.6983 P15924 P15924 1208 1218 DSP Desmoplakin yes yes 2 1.0962E-06 161.67 By MS/MS 1 0 1 1 15926000 0 15926000 0 10213 572 10751 44000 36620 36620 1 0 7784200 0 NKYQELINDIAR TGLKKLTELGTVDPKNKYQELINDIARDIR DPKNKYQELINDIARDIRNQRRYRQRRKAE K N K A R D 1 1 2 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 1 0 0 0 12 1 1475.7732 P46940 P46940 1476 1487 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 0.00012835 124.6 By MS/MS 2 0 1 1 7568800 0 7568800 0 10214 835 10752 44001 36621 36621 1 0 3408400 0 NLAFSLMTR VKRERGACEATEEARNLAFSLMTRHRPECI ATEEARNLAFSLMTRHRPECITFQQIKDNC R N L T R H 1 1 1 0 0 0 0 0 0 0 2 0 1 1 0 1 1 0 0 0 0 0 9 0 1051.5485 P03243 P03243 118 126 yes yes 2 2.0281E-23 188.98 By MS/MS By MS/MS By MS/MS 4.65 2.58 5 4 4 6 5 5 2 2 2 2 2 19 16 2606400000 20548000 1175900000 1410000000 10215 406 10753;10754 44002;44003;44004;44005;44006;44007;44008;44009;44010;44011;44012;44013;44014;44015;44016;44017;44018;44019;44020;44021;44022;44023;44024;44025;44026;44027;44028;44029;44030;44031;44032;44033;44034;44035;44036;44037;44038 36622;36623;36624;36625;36626;36627;36628;36629;36630;36631;36632;36633;36634;36635;36636;36637;36638;36639;36640;36641;36642;36643;36644;36645;36646;36647;36648;36649;36650;36651;36652;36653;36654;36655;36656;36657;36658 36628 132 37 16935000 395740000 284850000 NLAMGVNLTSMSK LTLRSEGFDTYRCDRNLAMGVNLTSMSKIL DRNLAMGVNLTSMSKILKCAGNEDIITLRA R N L S K I 1 0 2 0 0 0 0 1 0 0 2 1 2 0 0 2 1 0 0 1 0 0 13 0 1364.6792 P12004 P12004 65 77 PCNA Proliferating cell nuclear antigen yes yes 2 3.0812E-17 190.86 By MS/MS By MS/MS 6 0 3 1 2 75837000 0 15680000 60157000 10216 531 10755;10756 44039;44040;44041 36659;36660;36661 36660 235 3 0 5428000 9000100 NLANTVTEEILEK PDPEVMAKVKVLFVRNLANTVTEEILEKAF VRNLANTVTEEILEKAFSQFGKLERVKKLK R N L E K A 1 0 2 0 0 0 3 0 0 1 2 1 0 0 0 0 2 0 0 1 0 0 13 0 1472.7722 O60506 O60506 344 356 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2 0.00030066 144.55 By MS/MS By MS/MS 3.71 1.48 1 2 2 1 1 3 4 125690000 0 32488000 93203000 10217 227 10757 44042;44043;44044;44045;44046;44047;44048 36662;36663;36664;36665;36666;36667 36662 6 0 12485000 17204000 NLATAYDNFVELVANLK KQSNNEANLREEVLKNLATAYDNFVELVAN ATAYDNFVELVANLKEGTKFYNELTEILVR K N L L K E 3 0 3 1 0 0 1 0 0 0 3 1 0 1 0 0 1 0 1 2 0 0 17 0 1893.9836 Q8WUM4 Q8WUM4 655 671 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 1.3772E-35 137.84 By MS/MS 2 0 1 1 0 0 0 0 10218 1676 10758 44049 36668 36668 1 0 0 0 NLATTVTEEILEK PDPEVMAKVKVLFVRNLATTVTEEILEKSF VRNLATTVTEEILEKSFSEFGKLERVKKLK R N L E K S 1 0 1 0 0 0 3 0 0 1 2 1 0 0 0 0 3 0 0 1 0 0 13 0 1459.777 O43390 O43390 347 359 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 5.8328E-12 123.62 By MS/MS By MS/MS By MS/MS 2.89 0.994 1 2 3 3 2 3 4 243330000 24547000 52007000 166780000 10219 195 10759 44050;44051;44052;44053;44054;44055;44056;44057;44058 36669;36670;36671;36672;36673;36674;36675;36676;36677;36678 36674 10 24256000 20861000 32125000 NLAVSQVVHK AFTSKADLSGITGARNLAVSQVVHKAVLDV ITGARNLAVSQVVHKAVLDVFEEGTEASAA R N L H K A 1 0 1 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 3 0 0 10 0 1093.6244 P01011 P01011 351 360 SERPINA3 Alpha-1-antichymotrypsin;Alpha-1-antichymotrypsin His-Pro-less yes yes 2 0.0037004 101.25 By MS/MS 9.5 0.5 1 1 2 31122000 31122000 0 0 10220 368 10760 44059;44060 36679 36679 1 23340000 0 0 NLDCPELISEFMK WKGFSEEHNTWEPEKNLDCPELISEFMKKY EKNLDCPELISEFMKKYKKMKEGENNKPRE K N L M K K 0 0 1 1 1 0 2 0 0 1 2 1 1 1 1 1 0 0 0 0 0 0 13 0 1594.7371 P45973 P45973 56 68 CBX5 Chromobox protein homolog 5 yes yes 2 0.00056197 120.15 By MS/MS 6.5 0.5 1 1 2 69381000 0 0 69381000 10221 820 10761 44061;44062 36680;36681 36681 2 0 0 12084000 NLDDGIDDER QDRITRYQGVNLYVKNLDDGIDDERLRKEF NLYVKNLDDGIDDERLRKEFSPFGTITSAK K N L E R L 0 1 1 4 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 10 0 1160.4946 P11940;Q9H361 P11940 300 309 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2 0.0013386 109.48 By matching By matching By MS/MS 3.75 0.829 2 1 1 1 1 2 20887000 1636700 5160300 14090000 10222 530 10762 44063;44064;44065;44066 36682 36682 1 1888400 2199800 2151000 NLDDTIDDEK QERISRYQGVNLYIKNLDDTIDDEKLRKEF NLYIKNLDDTIDDEKLRKEFSPFGSITSAK K N L E K L 0 0 1 4 0 0 1 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 10 0 1176.5146 Q13310;P0CB38 Q13310 300 309 PABPC4;PABPC4L Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like yes no 2 0.02258 81.547 By MS/MS By matching 3.5 0.5 1 1 1 1 5231600 0 2662000 2569600 10223 1237 10763 44067;44068 36683 36683 1 0 1134800 419700 NLDDTIDDEKLR QERISRYQGVNLYIKNLDDTIDDEKLRKEF YIKNLDDTIDDEKLRKEFSPFGSITSAKVM K N L L R K 0 1 1 4 0 0 1 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 1 1445.6998 Q13310;P0CB38 Q13310 300 311 PABPC4;PABPC4L Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like yes no 3 0.0013005 101.71 By MS/MS 3 0 1 1 3554700 0 3554700 0 10224 1237 10764 44069 36684 36684 1 0 1515400 0 NLDENGLDLLSK TFPKWKPGSLASHVKNLDENGLDLLSKMLI HVKNLDENGLDLLSKMLIYDPAKRISGKMA K N L S K M 0 0 2 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 12 0 1329.6776 P06493 P06493 255 266 CDK1 Cyclin-dependent kinase 1 yes yes 2 0.00154 112.13 By MS/MS By MS/MS 6 0 2 1 1 17304000 0 3547800 13756000 10225 443 10765 44070;44071 36685;36686 36685 2 0 1228100 2058100 NLDFGIDMDSR HGVTFGYQGQKPLFKNLDFGIDMDSRICIV PLFKNLDFGIDMDSRICIVGPNGVGKSTLL K N L S R I 0 1 1 3 0 0 0 1 0 1 1 0 1 1 0 1 0 0 0 0 0 0 11 0 1281.566 Q8NE71 Q8NE71 643 653 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 1.4544E-13 179.51 By MS/MS 2 0 1 1 7979400 0 0 7979400 10226 1638 10766 44072 36687 36687 1 0 0 1803200 NLDFQDVLDK CHGAGRALSRAKSRRNLDFQDVLDKLADMG AKSRRNLDFQDVLDKLADMGIAIRVASPKL R N L D K L 0 0 1 3 0 1 0 0 0 0 2 1 0 1 0 0 0 0 0 1 0 0 10 0 1205.5928 Q9Y3I0 Q9Y3I0 442 451 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.0041296 99.815 By matching By MS/MS 4 0 2 1 1 27715000 2309500 0 25405000 10227 2276 10767 44073;44074 36688 36688 1 1801800 0 4149500 NLDGISHAPNAVK YGVQWHPEKAPYEWKNLDGISHAPNAVKTA WKNLDGISHAPNAVKTAFYLAEFFVNEARK K N L V K T 2 0 2 1 0 0 0 1 1 1 1 1 0 0 1 1 0 0 0 1 0 0 13 0 1334.6943 Q92820 Q92820 254 266 GGH Gamma-glutamyl hydrolase yes yes 2 0.0015137 110.08 By MS/MS 9.5 0.5 1 1 2 5591000 5591000 0 0 10228 1724 10768 44075;44076 36689;36690 36690 2 6111700 0 0 NLDIERPTYTNLNR AFMVDNEAIYDICRRNLDIERPTYTNLNRL RNLDIERPTYTNLNRLISQIVSSITASLRF R N L N R L 0 2 3 1 0 0 1 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 14 1 1717.8747 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 216 229 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3 9.9502E-250 325.79 By matching By MS/MS By MS/MS 4.83 2.78 5 4 4 4 4 4 4 1 2 3 1 15 19 7756200000 1626700 2276200000 5478400000 10229 1077;1515;1883;1078 10769 44077;44078;44079;44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094;44095;44096;44097;44098;44099;44100;44101;44102;44103;44104;44105;44106;44107;44108;44109;44110;44111 36691;36692;36693;36694;36695;36696;36697;36698;36699;36700;36701;36702;36703;36704;36705;36706;36707;36708;36709;36710;36711;36712;36713;36714;36715;36716;36717;36718;36719;36720;36721;36722;36723;36724;36725;36726;36727;36728;36729;36730;36731;36732;36733;36734;36735;36736;36737;36738 36705 47 1626700 747210000 908200000 NLDLAVLELMQSSVDNTK FYSLFSETINTELLKNLDLAVLELMQSSVD LAVLELMQSSVDNTKMVSAVLNGMLDQSFR K N L T K M 1 0 2 2 0 1 1 0 0 0 4 1 1 0 0 2 1 0 0 2 0 0 18 0 1989.0089 P78527 P78527 1574 1591 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 2.5497E-135 280.23 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 28950000 0 849660 28101000 10230 1089 10770 44112;44113;44114;44115 36739;36740;36741 36740 3 0 415300 6062500 NLDLDSIIAEVK SVTDTNVILSMDNSRNLDLDSIIAEVKAQY NSRNLDLDSIIAEVKAQYEEIAQRSKEEAE R N L V K A 1 0 1 2 0 0 1 0 0 2 2 1 0 0 0 1 0 0 0 1 0 0 12 0 1328.7187 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P13647;P13647;CON__P48668;P48668;CON__P35908;CON__P35908v2;P35908 CON__P35908 348 359 KRT6A;KRT5;KRT6C;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 epidermal no no 1;2;3 1.4193E-112 224.42 By MS/MS By MS/MS By MS/MS 4.87 2.85 7 5 5 6 5 4 3 4 4 3 19 8 19 6187500000 3626900000 365360000 2195200000 + 10231 65;66;68;37;47;58 10771 44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129;44130;44131;44132;44133;44134;44135;44136;44137;44138;44139;44140;44141;44142;44143;44144;44145;44146;44147;44148;44149;44150;44151;44152;44153;44154;44155;44156;44157;44158;44159;44160;44161 36742;36743;36744;36745;36746;36747;36748;36749;36750;36751;36752;36753;36754;36755;36756;36757;36758;36759;36760;36761;36762;36763;36764;36765;36766;36767;36768;36769;36770;36771;36772;36773;36774;36775;36776;36777;36778;36779 36775 33 3040000000 186000000 431290000 NLDLDSIIAEVR HVSDTSVVLSMDNNRNLDLDSIIAEVRAQY NNRNLDLDSIIAEVRAQYEEIAQRSKAEAE R N L V R A 1 1 1 2 0 0 1 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 12 0 1356.7249 CON__Q32MB2;Q86Y46;CON__P19013;P19013 CON__P19013 375 386 KRT73;KRT4 Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 4 no no 2 0.00076675 120.77 By MS/MS 3.33 1.7 1 1 1 3 4378800 4378800 0 0 + 10232 61;80 10772 44162;44163;44164 36780;36781 36781 2 3745300 0 0 NLDNAAEAAEQFK KKAYRKLALKWHPDKNLDNAAEAAEQFKLI DKNLDNAAEAAEQFKLIQAAYDVLSDPQER K N L F K L 4 0 2 1 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 13 0 1419.663 Q5F1R6 Q5F1R6 35 47 DNAJC21 DnaJ homolog subfamily C member 21 yes yes 2 0.00012131 152.07 By MS/MS 2.5 0.5 1 1 2 8130400 0 0 8130400 10233 1436 10773 44165;44166 36782 36782 1 0 0 1673300 NLDSEKEKELER MREDLFKQYIEKIAKNLDSEKEKELERQAR IAKNLDSEKEKELERQARIEASLREREREV K N L E R Q 0 1 1 1 0 0 4 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 12 2 1488.742 O14776 O14776 850 861 TCERG1 Transcription elongation regulator 1 yes yes 3 0.010749 77.185 By MS/MS 1 0 1 1 2227700 0 0 2227700 10234 145 10774 44167 36783 36783 1 0 0 480000 NLEALALDLMEPEQAVDLTLPK RSDSFENPVLQQHFRNLEALALDLMEPEQA DLMEPEQAVDLTLPKVEAMNKRLGSLVDEF R N L P K V 3 0 1 2 0 1 3 0 0 0 6 1 1 0 2 0 1 0 0 1 0 0 22 0 2422.2665 P12956 P12956 489 510 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 1.1811E-19 137.17 By MS/MS 2.29 1.03 2 2 2 1 7 31574000 0 0 31574000 10235 541 10775 44168;44169;44170;44171;44172;44173;44174 36784;36785;36786 36785 3 0 0 6320000 NLEASAVIQGLVK FCTSHSDNKIIIIHRNLEASAVIQGLVKDR HRNLEASAVIQGLVKDRSIFTGLMIDPRTK R N L V K D 2 0 1 0 0 1 1 1 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1340.7664 Q8IWA0 Q8IWA0 320 332 WDR75 WD repeat-containing protein 75 yes yes 2 0.0076113 93.096 By MS/MS 2 0 1 1 2280700 0 2280700 0 10236 1574 10776 44175 36787 36787 1 0 1027000 0 NLEAYAANPHSFVFTR RSRHQKRARAQAQLRNLEAYAANPHSFVFT LEAYAANPHSFVFTRGCTGRNIRQLSLDVR R N L T R G 3 1 2 0 0 0 1 0 1 0 1 0 0 2 1 1 1 0 1 1 0 0 16 0 1835.8955 Q9NQ55 Q9NQ55 21 36 PPAN Suppressor of SWI4 1 homolog yes yes 2;3 5.548E-26 196.38 By MS/MS By MS/MS 4 0.577 1 4 1 3 3 49057000 0 22238000 26819000 10237 2032 10777 44176;44177;44178;44179;44180;44181 36788;36789;36790;36791 36791 4 0 7552000 4301600 NLEELNISSAQ YLESPLSSETTQLSKNLEELNISSAQ____ QLSKNLEELNISSAQ_______________ K N L A Q - 1 0 2 0 0 1 2 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 11 0 1216.5935 Q9Y2R5 Q9Y2R5 120 130 MRPS17 28S ribosomal protein S17, mitochondrial yes yes 2 0.001995 108.98 By matching By MS/MS 7.5 0.5 1 1 1 1 3455100 1388500 2066600 0 10238 2247 10778 44182;44183 36792 36792 1 2992600 940230 0 NLEISIDTLMAK SVLKDGKPEMNKQIKNLEISIDTLMAKIKS QIKNLEISIDTLMAKIKSTMMTQEQIQKEY K N L A K I 1 0 1 1 0 0 1 0 0 2 2 1 1 0 0 1 1 0 0 0 0 0 12 0 1346.7116 Q9UM54 Q9UM54 873 884 MYO6 Unconventional myosin-VI yes yes 2 0.0015419 112.11 By MS/MS 2 0 1 1 1645100 0 1645100 0 10239 2198 10779 44184 36793 36793 1 0 740830 0 NLELKDLLPYGFAIHHAGMTR SASTEVLRTEAEQCKNLELKDLLPYGFAIH LLPYGFAIHHAGMTRVDRTLVEDLFADKHI K N L T R V 2 1 1 1 0 0 1 2 2 1 4 1 1 1 1 0 1 0 1 0 0 0 21 1 2395.2471 O75643 O75643 771 791 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 0.00020597 69.398 By MS/MS 1 0 1 1 7899500 0 0 7899500 10240 277 10780 44185 36794 36794 1 0 0 1702100 NLEQENQNLR SDMEYRLKELEYCKRNLEQENQNLRMQVSE EYCKRNLEQENQNLRMQVSETCTGPMLQAK R N L L R M 0 1 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1256.6109 Q8WVV4 Q8WVV4 428 437 POF1B Protein POF1B yes yes 2 3.1509E-38 167.24 By MS/MS 9 0 1 1 0 0 0 0 10241 1684 10781 44186 36795 36795 1 0 0 0 NLEQYNKLDQDLNEVK AIHKDLEDTEANKEKNLEQYNKLDQDLNEV LEQYNKLDQDLNEVKARVEELDRKYYEVKN K N L V K A 0 0 3 2 0 2 2 0 0 0 3 2 0 0 0 0 0 0 1 1 0 0 16 1 1961.9694 Q9UQE7 Q9UQE7 430 445 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 8.1039E-199 312.92 By MS/MS By MS/MS 1.67 0.471 2 4 1 5 91758000 0 14077000 77681000 10242 2222 10782 44187;44188;44189;44190;44191;44192 36796;36797;36798;36799;36800 36800 5 0 6339100 17303000 NLFEQLVR ______________________________ TMMLNVRNLFEQLVRRVEILSEGNEVQFIQ R N L V R R 0 1 1 0 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 8 0 1017.5607 Q9H0H5 Q9H0H5 10 17 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 0.00047622 129.4 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 15915000 0 6284600 9630400 10243 1963 10783 44193;44194;44195 36801;36802 36801 2 0 2705700 1867800 NLFLVIFQR ERLQEKVESAQSEQKNLFLVIFQRFIMILT AQSEQKNLFLVIFQRFIMILTEHLVRCETD K N L Q R F 0 1 1 0 0 1 0 0 0 1 2 0 0 2 0 0 0 0 0 1 0 0 9 0 1148.6706 Q09161 Q09161 708 716 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.0016439 107.32 By MS/MS 3 0 1 1 2221900 0 0 2221900 10244 1189 10784 44196 36803 36803 1 0 0 430950 NLFQLAR DLVSKWLGESEKLVKNLFQLARENKPSIIF GESEKLVKNLFQLARENKPSIIFIDEIDSL K N L A R E 1 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 0 860.48684 O75351 O75351 218 224 VPS4B Vacuolar protein sorting-associated protein 4B yes yes 2 0.022777 98.807 By MS/MS 4 0 1 1 3640600 0 0 3640600 10245 252 10785 44197 36804 36804 1 0 0 594620 NLGFGMGIEFR VVKKQKPELLNKITKNLGFGMGIEFREGSL KITKNLGFGMGIEFREGSLVINSKNQYKLK K N L F R E 0 1 1 0 0 0 1 3 0 1 1 0 1 2 0 0 0 0 0 0 0 0 11 0 1239.607 Q9Y5B9 Q9Y5B9 347 357 SUPT16H FACT complex subunit SPT16 yes yes 2 6.7641E-08 162.88 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 25595000 0 8001000 17594000 10246 2296 10786;10787 44198;44199;44200;44201;44202 36805;36806;36807;36808;36809 36809 742 5 0 3602900 3840500 NLGFTAIPLHGQMSQSK CSTCNNTQRTALLLRNLGFTAIPLHGQMSQ GFTAIPLHGQMSQSKRLGSLNKFKAKARSI R N L S K R 1 0 1 0 0 2 0 2 1 1 2 1 1 1 1 2 1 0 0 0 0 0 17 0 1827.9302 Q9H0S4 Q9H0S4 285 301 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2;3 1.544E-09 171.99 By MS/MS By MS/MS 4.6 0.49 2 3 2 3 78970000 0 34278000 44693000 10247 1964 10788 44203;44204;44205;44206;44207 36810;36811;36812;36813 36813 4 0 9630900 6514100 NLGIPIITVLGDSK QLAVAMGPNIKQHVKNLGIPIITVLGDSKN KNLGIPIITVLGDSKNNVRAAALATVNAWA K N L S K N 0 0 1 1 0 0 0 2 0 3 2 1 0 0 1 1 1 0 0 1 0 0 14 0 1438.8395 Q14008 Q14008 941 954 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00037053 132.17 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 126920000 0 37266000 89656000 10248 1279 10789 44208;44209;44210;44211 36814;36815;36816 36816 3 0 17659000 19555000 NLGLEELGIELDPR CDVLLVCIGRRPFTKNLGLEELGIELDPRG KNLGLEELGIELDPRGRIPVNTRFQTKIPN K N L P R G 0 1 1 1 0 0 3 2 0 1 4 0 0 0 1 0 0 0 0 0 0 0 14 0 1566.8253 P09622 P09622 321 334 DLD Dihydrolipoyl dehydrogenase, mitochondrial yes yes 2 0.002277 100.69 By MS/MS 4 0 1 1 4867100 0 0 4867100 10249 489 10790 44212 36817 36817 1 0 0 794960 NLGPINEWWITGFDGGEK IYDDDPSLEGGVNGKNLGPINEWWITGFDG PINEWWITGFDGGEKALIGFSTSFAEYILM K N L E K A 0 0 2 1 0 0 2 4 0 2 1 1 0 1 1 0 1 2 0 0 0 0 18 0 2031.969 P26358 P26358 457 474 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 1.1816E-22 190.1 By MS/MS 1.5 0.5 1 1 2 13499000 0 0 13499000 10250 667 10791 44213;44214 36818;36819 36818 2 0 0 2916700 NLGQNLWGPHR LIGRKEVPKQQAAYRNLGQNLWGPHRYGCL AAYRNLGQNLWGPHRYGCLAGVRVRTVVSG R N L H R Y 0 1 2 0 0 1 0 2 1 0 2 0 0 0 1 0 0 1 0 0 0 0 11 0 1290.6582 Q9P258 Q9P258 131 141 RCC2 Protein RCC2 yes yes 2;3 4.421E-47 225.4 By MS/MS By MS/MS 3.12 1.05 1 1 2 4 4 4 98561000 0 35670000 62891000 10251 2120 10792 44215;44216;44217;44218;44219;44220;44221;44222 36820;36821;36822;36823 36821 4 0 12115000 10610000 NLGTALAELR IQDQASAMQLSQCAKNLGTALAELRTAAQK SQCAKNLGTALAELRTAAQKAQEACGPLEM K N L L R T 2 1 1 0 0 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1056.5928 Q9Y490 Q9Y490 1026 1035 TLN1 Talin-1 yes yes 2 0.024095 80.688 By MS/MS 1 0 1 1 3352100 0 3352100 0 10252 2284 10793 44223 36824 36824 1 0 1638500 0 NLIAPIFLHR AFEKPTQIYRFLRTRNLIAPIFLHRTLTYM FLRTRNLIAPIFLHRTLTYMSHRNSRTNIK R N L H R T 1 1 1 0 0 0 0 0 1 2 2 0 0 1 1 0 0 0 0 0 0 0 10 0 1192.7081 Q15022 Q15022 104 113 SUZ12 Polycomb protein SUZ12 yes yes 2 0.02633 88.954 By MS/MS 2 0 1 1 2869300 0 0 2869300 10253 1333 10794 44224 36825 36825 0 0 0 648410 NLIDAGVDALR LQVIGGNVVTAAQAKNLIDAGVDALRVGMG AQAKNLIDAGVDALRVGMGSGSICITQEVL K N L L R V 2 1 1 2 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1155.6248 P12268 P12268 312 322 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 2 3.5449E-10 137.95 By MS/MS By MS/MS 4 0 2 1 1 13250000 0 13250000 0 10254 535 10795 44225;44226 36826;36827 36827 2 0 4397300 0 NLIEVMR DDIIICEIGDVFKAKNLIEVMRKSHEAREK IGDVFKAKNLIEVMRKSHEAREKLLRLGIF K N L M R K 0 1 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 7 0 873.47422 Q9Y512 Q9Y512 75 81 SAMM50 Sorting and assembly machinery component 50 homolog yes yes 2 0.019593 103.29 By MS/MS 4 0 1 1 5502800 0 0 5502800 10255 2292 10796 44227 36828 36828 1 0 0 898790 NLIIEAVTNLR GQDKPHETYRLLKRRNLIIEAVTNLRLIES LKRRNLIIEAVTNLRLIESLFTIQKMIMDQ R N L L R L 1 1 2 0 0 0 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 11 0 1254.7296 Q12789 Q12789 619 629 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.00032848 131.44 By matching By MS/MS 1.33 0.471 2 1 1 2 7432200 0 1454700 5977500 10256 1198 10797 44228;44229;44230 36829;36830 36829 2 0 711020 1308000 NLILVVR IGGLLDVDCSEDVIKNLILVVRGQFSTDEL DCSEDVIKNLILVVRGQFSTDELVAEVEKR K N L V R G 0 1 1 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 7 0 825.54362 Q00610 Q00610 831 837 CLTC Clathrin heavy chain 1 yes yes 2 0.0094762 121.68 By matching By MS/MS By MS/MS 1.71 0.7 3 3 1 2 2 3 55072000 1518600 10985000 42568000 10257 1125 10798 44231;44232;44233;44234;44235;44236;44237 36831;36832;36833;36834 36832 3 1703300 5067900 9253900 NLINQMLTINPAK DFPSPEWDTVTPEAKNLINQMLTINPAKRI AKNLINQMLTINPAKRITADQALKHPWVCQ K N L A K R 1 0 3 0 0 1 0 0 0 2 2 1 1 0 1 0 1 0 0 0 0 0 13 0 1468.8072 Q13555;Q13554 Q13555 247 259 CAMK2G;CAMK2B Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta yes no 2 0.0081602 91.549 By matching By matching By MS/MS 2.5 1.12 1 1 1 1 1 1 2 14541000 901670 1297400 12342000 10258 1258 10799 44238;44239;44240;44241 36835 36835 1 901670 584250 2057600 NLISPDLGVVFLNVPENLK EEQSQGSTTNSDWMKNLISPDLGVVFLNVP PDLGVVFLNVPENLKNPEPNIKMKRSIEEA K N L L K N 0 0 3 1 0 0 1 1 0 1 4 1 0 1 2 1 0 0 0 3 0 0 19 0 2080.1568 P46821 P46821 348 366 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 8.7522E-09 120.14 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 9147100 0 645150 8501900 10259 834 10800 44242;44243;44244 36836;36837 36836 2 0 315340 1842300 NLISPDLGVVFLNVPENLKNPEPNIK EEQSQGSTTNSDWMKNLISPDLGVVFLNVP LNVPENLKNPEPNIKMKRSIEEACFTLQYL K N L I K M 0 0 5 1 0 0 2 1 0 2 4 2 0 1 4 1 0 0 0 3 0 0 26 1 2872.5698 P46821 P46821 348 373 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 3 1.9461E-08 83.701 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 10516000 0 1817500 8698000 10260 834 10801 44245;44246 36838;36839 36839 2 0 818440 1874100 NLKEPLLTFR DDIHAICSLLKDFLRNLKEPLLTFRLNRAF KDFLRNLKEPLLTFRLNRAFMEAAEITDED R N L F R L 0 1 1 0 0 0 1 0 0 0 3 1 0 1 1 0 1 0 0 0 0 0 10 1 1229.7132 Q9H0H5 Q9H0H5 428 437 RACGAP1 Rac GTPase-activating protein 1 yes yes 3 0.00014261 130.63 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 8526400 0 4076100 4450300 10261 1963 10802 44247;44248 36840;36841 36841 2 0 1352700 863140 NLLALIHR TLSQAIVKVVIPTERNLLALIHRMIEFVVR VVIPTERNLLALIHRMIEFVVREGPMFEAM R N L H R M 1 1 1 0 0 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 8 0 948.58688 O15042 O15042 426 433 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 7.9084E-09 166.34 By MS/MS 1 0 1 1 3767900 0 0 3767900 10262 163 10803 44249 36842 36842 1 0 0 811850 NLLDEELQR LTTLRLQLEETDHQKNLLDEELQRLKAEAT ETDHQKNLLDEELQRLKAEATEAARQRSQV K N L Q R L 0 1 1 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1128.5775 Q15149 Q15149 2340 2348 PLEC Plectin yes yes 2 5.1723E-07 153.71 By MS/MS 1 0 1 1 16750000 0 16750000 0 10263 1348 10804 44250 36843 36843 1 0 8187100 0 NLLEISGPETVPLPNVPSIALPSKPAK LMAELEELEQEELDKNLLEISGPETVPLPN LPNVPSIALPSKPAKKKEEEDDDMKELENW K N L A K K 2 0 2 0 0 0 2 1 0 2 4 2 0 0 6 3 1 0 0 2 0 0 27 1 2780.5688 Q9H444 Q9H444 179 205 CHMP4B Charged multivesicular body protein 4b yes yes 3 4.3194E-08 73.865 By MS/MS 6 0 1 1 32284000 0 0 32284000 10264 1981 10805 44251 36844 36844 1 0 0 4830000 NLLEQSSNSTSWFWR ______________________________ NLLEQSSNSTSWFWRFLWGSSQAKLVCRIK R N L W R F 0 1 2 0 0 1 1 0 0 0 2 0 0 1 0 4 1 2 0 0 0 0 15 0 1853.8697 P03246;P03247 P03246 15 29 yes no 2 4.6996E-36 217.14 By MS/MS By MS/MS 8 0.707 1 2 1 1 3 45758000 0 1066000 44692000 10265 407 10806 44252;44253;44254;44255 36845;36846;36847 36847 3 0 484990 7429600 NLLESLK FTKKKSNKFAIETVKNLLESLKGNRTENFT KFAIETVKNLLESLKGNRTENFTKTSGKRT K N L L K G 0 0 1 0 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 7 0 815.47527 Q9NVV4 Q9NVV4 556 562 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.065422 73.616 By MS/MS 4 0 1 1 9173000 0 9173000 0 10266 2072 10807 44256 36848 36848 1 0 3044200 0 NLLGLALGR PDTLEMRVRDGSKIRNLLGLALGRLEGGSA DGSKIRNLLGLALGRLEGGSARHVVFSGSG R N L G R L 1 1 1 0 0 0 0 2 0 0 4 0 0 0 0 0 0 0 0 0 0 0 9 0 925.5709 Q8N5L8 Q8N5L8 38 46 RPP25L Ribonuclease P protein subunit p25-like protein yes yes 2 0.0058413 95.541 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 16002000 0 8289600 7712500 10267 1608 10808 44257;44258;44259;44260 36849;36850;36851 36851 3 0 4032100 1242800 NLLHVTDTGVGMTR GNEELTVKIKCDKEKNLLHVTDTGVGMTRE KNLLHVTDTGVGMTREELVKNLGTIAKSGT K N L T R E 0 1 1 1 0 0 0 2 1 0 2 0 1 0 0 0 3 0 0 2 0 0 14 0 1512.7719 P14625 P14625 143 156 HSP90B1 Endoplasmin yes yes 2;3 0.00012528 115.82 By matching By MS/MS By MS/MS 2.5 0.866 1 3 3 1 1 3 4 38185000 1081400 7129900 29973000 10268 560 10809 44261;44262;44263;44264;44265;44266;44267;44268 36852;36853;36854;36855 36853 4 1081400 3058100 6389200 NLLIFENLIDLK LKFYQGFLFSEKPEKNLLIFENLIDLKRRY PEKNLLIFENLIDLKRRYNFPVEVEVPMER K N L L K R 0 0 2 1 0 0 1 0 0 2 4 1 0 1 0 0 0 0 0 0 0 0 12 0 1443.8337 P78527 P78527 1974 1985 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0088366 96.171 By MS/MS 1 0 1 1 5089500 0 0 5089500 10269 1089 10810 44269 36856 36856 1 0 0 1096600 NLLIFENLIDLKR LKFYQGFLFSEKPEKNLLIFENLIDLKRRY EKNLLIFENLIDLKRRYNFPVEVEVPMERK K N L K R R 0 1 2 1 0 0 1 0 0 2 4 1 0 1 0 0 0 0 0 0 0 0 13 1 1599.9348 P78527 P78527 1974 1986 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.00073243 102.62 By MS/MS 1 0 1 1 4122900 0 0 4122900 10270 1089 10811 44270 36857 36857 1 0 0 888340 NLLNSVIGR SRASRDLLKEFPQPKNLLNSVIGRALGISH EFPQPKNLLNSVIGRALGISHAKDKLVYVH K N L G R A 0 1 2 0 0 0 0 1 0 1 2 0 0 0 0 1 0 0 0 1 0 0 9 0 984.57163 Q7L2E3 Q7L2E3 55 63 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 4.1081E-07 155.82 By matching By MS/MS By MS/MS 1.5 0.5 2 2 1 2 1 29383000 453480 15517000 13412000 10271 1522 10812 44271;44272;44273;44274 36858;36859 36858 2 453480 7045900 3030900 NLLSLGHNNIVR TISLCCWDSRTAERRNLLSLGHNNIVRCIV ERRNLLSLGHNNIVRCIVHSPTNPGFMTCS R N L V R C 0 1 3 0 0 0 0 1 1 1 3 0 0 0 0 1 0 0 0 1 0 0 12 0 1348.7575 Q05048 Q05048 390 401 CSTF1 Cleavage stimulation factor subunit 1 yes yes 3 0.00016507 119.27 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 17503000 0 4638900 12864000 10272 1163 10813 44275;44276;44277 36860;36861 36860 2 0 1195800 1903100 NLLSVAYK KKVAGMDVELTVEERNLLSVAYKNVIGARR ELTVEERNLLSVAYKNVIGARRASWRIISS R N L Y K N 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 1 1 0 0 8 0 906.51747 P31947;P62258;P63104;P27348;P31946;P61981;Q04917 P62258 43 50 SFN;YWHAE;YWHAZ;YWHAQ;YWHAB;YWHAG;YWHAH 14-3-3 protein sigma;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein eta no no 2 0.024096 81.119 By matching By MS/MS By MS/MS 4.33 2.11 1 1 2 1 2 2 3 3 3 475770000 11747000 167620000 296410000 10273 1011;1059;724;676;1003;1162;725 10814 44278;44279;44280;44281;44282;44283;44284;44285;44286 36862;36863;36864;36865 36865 4 12235000 85774000 49214000 NLLTDLEAK TVALTVTLESETEGRNLLTDLEAKNSFYCS SETEGRNLLTDLEAKNSFYCSSFTIPDSFP R N L A K N 1 0 1 1 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1015.555 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 76 84 yes yes 2 0.065712 67.494 By matching By MS/MS 2.5 0.5 1 1 1 1 6705400 0 2637500 4068000 + 10274 30 10815 44287;44288 36866 36866 1 0 1187700 788990 NLLTGLVR RRMGLGPESRIHLLRNLLTGLVRHERIEAP SRIHLLRNLLTGLVRHERIEAPWARVDEMR R N L V R H 0 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 1 0 0 1 0 0 8 0 884.54435 Q9NRX2 Q9NRX2 31 38 MRPL17 39S ribosomal protein L17, mitochondrial yes yes 2 0.0097857 94.006 By MS/MS By matching 7.33 0.471 2 1 1 2 5062000 0 1578000 3484100 10275 2048 10816 44289;44290;44291 36867 36867 1 0 906070 577720 NLLTVTSSDEMMK RVVQMLGSLGGQINKNLLTVTSSDEMMKSY NKNLLTVTSSDEMMKSYVAWDREKRLSFAV K N L M K S 0 0 1 1 0 0 1 0 0 0 2 1 2 0 0 2 2 0 0 1 0 0 13 0 1467.6949 P78527 P78527 869 881 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00010814 152.62 By MS/MS 1 0 1 1 19736000 0 0 19736000 10276 1089 10817 44292 36868 36868 1 0 0 4252500 NLMFLVLR VKVFGWVHRLRRQGKNLMFLVLRDGTGYLQ RLRRQGKNLMFLVLRDGTGYLQCVLADELC K N L L R D 0 1 1 0 0 0 0 0 0 0 3 0 1 1 0 0 0 0 0 1 0 0 8 0 1004.5841 O43776 O43776 143 150 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.00043065 130.05 By matching By MS/MS By MS/MS 4.3 1.27 3 4 1 1 1 1 3 6 53444000 1533300 10769000 41141000 10277 211 10818;10819 44293;44294;44295;44296;44297;44298;44299;44300;44301;44302 36869;36870;36871;36872;36873;36874 36872 90 5 1196300 3761600 7523500 NLMNAVVQTVK VSGVDSAMSLIQAAKNLMNAVVQTVKASYV QAAKNLMNAVVQTVKASYVASTKYQKSQGM K N L V K A 1 0 2 0 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 11 0 1215.6645 P35221;Q9UI47 P35221 824 834 CTNNA1;CTNNA3 Catenin alpha-1;Catenin alpha-3 yes no 2 0.015193 86.898 By MS/MS 2 0 1 1 2817800 0 2817800 0 10278 739 10820 44303 36875 36875 1 0 1268900 0 NLMQFHTVGTK LAKVIQIATSSSTAKNLMQFHTVGTKTKLS STAKNLMQFHTVGTKTKLSTLTLLWPCPMT K N L T K T 0 0 1 0 0 1 0 1 1 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1274.6441 Q7L2E3 Q7L2E3 264 274 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.0003273 122.96 By MS/MS 1.5 0.5 1 1 2 18108000 0 0 18108000 10279 1522 10821 44304;44305 36876 36876 1 0 0 4028400 NLNDSSLFVSAEEFGHLLDENMGSK FDFAGSFQGPRKKKRNLNDSSLFVSAEEFG AEEFGHLLDENMGSKFDNIGMNAMANKDNA R N L S K F 1 0 3 2 0 0 3 2 1 0 4 1 1 2 0 4 0 0 0 1 0 0 25 0 2752.265 Q03701 Q03701 969 993 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 3 1.4392E-29 152.88 By MS/MS 1.5 0.5 1 1 2 43339000 0 0 43339000 10280 1157 10822 44306;44307 36877 36877 1 0 0 9769000 NLNEKDYELLCLDGTR VPQNTGGKNPDPWAKNLNEKDYELLCLDGT LNEKDYELLCLDGTRKPVEEYANCHLARAP K N L T R K 0 1 2 2 1 0 2 1 0 0 4 1 0 0 0 0 1 0 1 0 0 0 16 1 1951.9309 P02787 P02787 572 587 TF Serotransferrin yes yes 3 8.3086E-06 121.82 By MS/MS 9 0 1 1 17973000 17973000 0 0 10281 399 10823 44308 36878 36878 1 10089000 0 0 NLNGHSIGQYR EVEIDGKTYQVKPIRNLNGHSIGQYRIHAG KPIRNLNGHSIGQYRIHAGKTVPIVKGGEA R N L Y R I 0 1 2 0 0 1 0 2 1 1 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1257.6214 P50579 P50579 327 337 METAP2 Methionine aminopeptidase 2 yes yes 3 0.0001109 118.4 By MS/MS By MS/MS 4 0 2 1 1 9953200 0 6695700 3257500 10282 881 10824 44309;44310 36879;36880 36879 1 0 2222100 532060 NLNNSNLFSPVNR GAFMPKKSIKKLVLKNLNNSNLFSPVNRDS LKNLNNSNLFSPVNRDSENLASPSEYPENG K N L N R D 0 1 5 0 0 0 0 0 0 0 2 0 0 1 1 2 0 0 0 1 0 0 13 0 1487.7481 P52948 P52948 604 616 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 2.5953E-07 167.93 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 45357000 0 5612800 39744000 10283 916 10825 44311;44312;44313 36881;36882;36883 36882 3 0 2527500 8254200 NLNPHSTMDSILGALAPYAVLSSSNVR SEPSSENANDTIILRNLNPHSTMDSILGAL GALAPYAVLSSSNVRVIKDKQTQLNRGFAF R N L V R V 3 1 3 1 0 0 0 1 1 1 4 0 1 0 2 5 1 0 1 2 0 0 27 0 2826.4334 P98175 P98175 306 332 RBM10 RNA-binding protein 10 yes yes 3 7.6724E-07 65.275 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 5691400 0 1317500 4373900 10284 1117 10826 44314;44315 36884;36885 36885 2 0 593270 942430 NLNYLHLDYNFNLKPVK CRQGYNMLNLLIHRKNLNYLHLDYNFNLKP NYLHLDYNFNLKPVKTLTTKERKKSRFGNA K N L V K T 0 0 4 1 0 0 0 0 1 0 4 2 0 1 1 0 0 0 2 1 0 0 17 1 2104.1106 Q6P2Q9 Q6P2Q9 512 528 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.00033337 90.453 By MS/MS 1 0 1 1 16939000 0 0 16939000 10285 1490 10827 44316 36886 36886 1 0 0 3649800 NLPFDFTWK HAPGVARKACQIFVRNLPFDFTWKMLKDKF CQIFVRNLPFDFTWKMLKDKFNECGHVLYA R N L W K M 0 0 1 1 0 0 0 0 0 0 1 1 0 2 1 0 1 1 0 0 0 0 9 0 1166.576 P52272 P52272 659 667 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.0041163 98.629 By MS/MS By MS/MS By MS/MS 4.93 2.67 1 2 3 2 1 1 2 1 1 1 1 10 4 253390000 11451000 73280000 168660000 10286 902 10828 44317;44318;44319;44320;44321;44322;44323;44324;44325;44326;44327;44328;44329;44330;44331 36887;36888;36889;36890;36891;36892;36893;36894;36895;36896 36888 10 13212000 35037000 32676000 NLPGLVQEGEPFSEEATLFTK ITFLLAGIECPRGARNLPGLVQEGEPFSEE QEGEPFSEEATLFTKELVLQREVEVEVESM R N L T K E 1 0 1 0 0 1 4 2 0 0 3 1 0 2 2 1 2 0 0 1 0 0 21 0 2305.1478 Q7KZF4 Q7KZF4 566 586 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 9.058E-29 194.23 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 55817000 0 7912200 47905000 10287 1518 10829 44332;44333;44334;44335;44336 36897;36898;36899 36897 3 0 3563000 10783000 NLPIYSEEIVEMYK YTYSGLFCVVINPYKNLPIYSEEIVEMYKG KNLPIYSEEIVEMYKGKKRHEMPPHIYAIT K N L Y K G 0 0 1 0 0 0 3 0 0 2 1 1 1 0 1 1 0 0 2 1 0 0 14 0 1726.8488 P35579 P35579 126 139 MYH9 Myosin-9 yes yes 2 0.00043051 122.42 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 83611000 0 41430000 42181000 10288 752 10830;10831 44337;44338;44339;44340 36900;36901;36902 36901 356 3 0 20169000 9088500 NLPIYSENIIEMYR YTYSGLFCVVINPYKNLPIYSENIIEMYRG KNLPIYSENIIEMYRGKKRHEMPPHIYAIS K N L Y R G 0 1 2 0 0 0 2 0 0 3 1 0 1 0 1 1 0 0 2 0 0 0 14 0 1753.8709 P35580 P35580 130 143 MYH10 Myosin-10 yes yes 2 1.9846E-47 227.94 By matching By MS/MS By MS/MS 1.86 1.12 4 1 1 1 1 4 2 64609000 1842100 29653000 33114000 10289 753 10832;10833 44341;44342;44343;44344;44345;44346;44347 36903;36904;36905;36906 36906 371 4 1842100 14306000 6670300 NLPLADQGSSHHITVK IRRQIEHCEGRMTLKNLPLADQGSSHHITV LPLADQGSSHHITVKINELKSVQNDSQAIA K N L V K I 1 0 1 1 0 1 0 1 2 1 2 1 0 0 1 2 1 0 0 1 0 0 16 0 1715.8955 P15924 P15924 690 705 DSP Desmoplakin yes yes 2;3;4 6.5593E-05 109 By MS/MS By MS/MS By MS/MS 4.84 3.5 5 3 1 1 1 1 1 1 2 3 9 4 6 416450000 211860000 62413000 142170000 10290 572 10834 44348;44349;44350;44351;44352;44353;44354;44355;44356;44357;44358;44359;44360;44361;44362;44363;44364;44365;44366 36907;36908;36909;36910;36911;36912;36913;36914;36915;36916;36917;36918;36919;36920;36921;36922 36920 16 219670000 35450000 39389000 NLPLGWDGKPIPYWLYK SESEDEENEIIYNPKNLPLGWDGKPIPYWL PLGWDGKPIPYWLYKLHGLNINYNCEICGN K N L Y K L 0 0 1 1 0 0 0 2 0 1 3 2 0 0 3 0 0 2 2 0 0 0 17 1 2059.0931 Q12874 Q12874 382 398 SF3A3 Splicing factor 3A subunit 3 yes yes 3 0.058536 34.498 By MS/MS 3 0 1 1 10050000 0 0 10050000 10291 1206 10835 44367 36923 36923 1 0 0 1949200 NLPLPPPPPPR PPPPGRGGRGGSRARNLPLPPPPPPRGGDL SRARNLPLPPPPPPRGGDLMAYDRRGRPGD R N L P R G 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 0 0 0 0 0 0 11 0 1193.6921 P61978 P61978 306 316 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 4.5389E-05 145.63 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 226950000 0 113570000 113380000 10292 1002 10836 44368;44369;44370;44371;44372;44373;44374 36924;36925;36926;36927;36928;36929;36930;36931;36932;36933;36934;36935;36936;36937;36938;36939;36940;36941;36942;36943;36944;36945;36946 36927 23 0 37953000 18849000 NLPPSGAVPVTGIPPHVVK QEDLRTFSWASVTSKNLPPSGAVPVTGIPP SGAVPVTGIPPHVVKVPASQPRPESKPESQ K N L V K V 1 0 1 0 0 0 0 2 1 1 1 1 0 0 5 1 1 0 0 4 0 0 19 0 1878.0727 Q13283 Q13283 258 276 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3 0.010036 46.356 By MS/MS 4 0 1 1 18648000 0 18648000 0 10293 1236 10837 44375 36947;36948;36949;36950;36951;36952;36953 36947 7 0 6188700 0 NLPQYVSNELLEEAFSVFGQVER LRVRFACHSASLTVRNLPQYVSNELLEEAF ELLEEAFSVFGQVERAVVIVDDRGRPSGKG R N L E R A 1 1 2 0 0 2 4 1 0 0 3 0 0 2 1 2 0 0 1 3 0 0 23 0 2667.318 Q15233 Q15233 154 176 NONO Non-POU domain-containing octamer-binding protein yes yes 3 0.0029719 46.178 By MS/MS 3 1 1 1 2 4653900 0 0 4653900 10294 1351 10838 44376;44377 36954;36955 36955 2 0 0 1001900 NLPVNFEVAR NKSEISQVFEIALKRNLPVNFEVARESGPP IALKRNLPVNFEVARESGPPHMKNFVTKVS R N L A R E 1 1 2 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 2 0 0 10 0 1157.6193 O95793 O95793 197 206 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 0.041819 74.941 By MS/MS By matching 4.5 1.12 1 1 1 1 2 2 55714000 0 47178000 8536600 10295 341 10839 44378;44379;44380;44381 36956 36956 1 0 16203000 1215400 NLQCLVIDEADR RLLDHMQNTPGFMYKNLQCLVIDEADRILD MYKNLQCLVIDEADRILDVGFEEELKQIIK K N L D R I 1 1 1 2 1 1 1 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 12 0 1444.698 Q9NVP1 Q9NVP1 326 337 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 5.2292E-05 145.89 By matching By MS/MS 2.5 0.5 1 1 1 1 14155000 0 8039300 6115700 10296 2069 10840 44382;44383 36957 36957 1 0 3620200 1186200 NLQDVVER DALDPNAYEAFKASRNLQDVVERVLHNAQE EAFKASRNLQDVVERVLHNAQEVEKEPGQR R N L E R V 0 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 8 0 971.50361 P49916 P49916 446 453 LIG3 DNA ligase 3 yes yes 2 0.0010186 121.62 By matching By MS/MS By MS/MS 2 0.707 1 2 1 1 1 2 21001000 2194200 9267700 9539300 10297 874 10841 44384;44385;44386;44387 36958;36959;36960 36959 3 2194200 4173400 2155700 NLQEAEEWYK ALRDVRQQYESVAAKNLQEAEEWYKSKFAD SVAAKNLQEAEEWYKSKFADLSEAANRNND K N L Y K S 1 0 1 0 0 1 3 0 0 0 1 1 0 0 0 0 0 1 1 0 0 0 10 0 1308.5986 P08670;P41219 P08670 283 292 VIM;PRPH Vimentin;Peripherin yes no 2 2.4831E-05 126.62 By MS/MS By MS/MS By MS/MS 3.89 1.91 2 1 3 1 1 1 1 2 6 1177200000 37074000 62309000 1077800000 10298 476 10842 44388;44389;44390;44391;44392;44393;44394;44395;44396 36961;36962;36963;36964;36965;36966;36967;36968;36969;36970 36961 8 28924000 21642000 171960000 NLQEGNEVDSQSSIR RLLRITKRTGMKEEKNLQEGNEVDSQSSIR NLQEGNEVDSQSSIRTEAKEASGETTGVDI K N L I R T 0 1 2 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 0 1 0 0 15 0 1674.7809 O75152 O75152 522 536 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 1.286E-90 259.55 By MS/MS By MS/MS 2 0 2 1 1 13836000 0 5736400 8099600 10299 244 10843 44397;44398 36971;36972 36971 2 0 2583200 1830400 NLQEIQQAGER AAETEGISELPHVERNLQEIQQAGERLRSR HVERNLQEIQQAGERLRSRTLTRTSQETAD R N L E R L 1 1 1 0 0 3 2 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1284.6422 Q8N1F7 Q8N1F7 32 42 NUP93 Nuclear pore complex protein Nup93 yes yes 2 4.5668E-14 183.47 By MS/MS 3 0 1 1 15712000 0 0 15712000 10300 1599 10844 44399 36973 36973 1 0 0 3047400 NLQEQVMAVTAQVK GVLESDLPSAVTLLKNLQEQVMAVTAQVKS KNLQEQVMAVTAQVKSLTQKVQAGAYPTEK K N L V K S 2 0 1 0 0 3 1 0 0 0 1 1 1 0 0 0 1 0 0 3 0 0 14 0 1557.8185 Q8NEJ9 Q8NEJ9 20 33 NGDN Neuroguidin yes yes 2 0.00058628 117.98 By MS/MS By MS/MS 6 0 2 1 1 17775000 0 5916200 11859000 10301 1639 10845 44400;44401 36974;36975 36975 2 0 2048000 1774200 NLQLFMENK IRYYNKVPVEKRVFKNLQLFMENKQPEDDL EKRVFKNLQLFMENKQPEDDLFDRLNTGIL K N L N K Q 0 0 2 0 0 1 1 0 0 0 2 1 1 1 0 0 0 0 0 0 0 0 9 0 1135.5696 P11387;Q969P6 P11387 550 558 TOP1;TOP1MT DNA topoisomerase 1;DNA topoisomerase I, mitochondrial yes no 2 3.0441E-12 174.16 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 123620000 0 31202000 92420000 10302 523 10846 44402;44403;44404;44405;44406;44407 36976;36977;36978;36979;36980 36979 5 0 13657000 19484000 NLQLFMENKQPEDDLFDR IRYYNKVPVEKRVFKNLQLFMENKQPEDDL LFMENKQPEDDLFDRLNTGILNKHLQDLME K N L D R L 0 1 2 3 0 2 2 0 0 0 3 1 1 2 1 0 0 0 0 0 0 0 18 1 2251.0579 P11387 P11387 550 567 TOP1 DNA topoisomerase 1 yes yes 2;3 1.2991E-39 214.23 By MS/MS 2 0 2 2 25965000 0 0 25965000 10303 523 10847 44408;44409 36981;36982 36982 2 0 0 5867700 NLQNLLILTAIK LEKIVLDNSVFSEHRNLQNLLILTAIKADR EHRNLQNLLILTAIKADRTRVMEYINRLDN R N L I K A 1 0 2 0 0 1 0 0 0 2 4 1 0 0 0 0 1 0 0 0 0 0 12 0 1352.8391 Q00610;P53675 Q00610 1023 1034 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 1.0529E-05 157.66 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 211670000 0 104500000 107170000 10304 1125 10848 44410;44411;44412;44413;44414;44415 36983;36984;36985;36986;36987;36988 36984 6 0 47314000 23146000 NLQSFGTEEPAYSTR SARLSQSSQDSSPVRNLQSFGTEEPAYSTR NLQSFGTEEPAYSTRRVTRSQQQPTPVTPK R N L T R R 1 1 1 0 0 1 2 1 0 0 1 0 0 1 1 2 2 0 1 0 0 0 15 0 1698.7849 O95251 O95251 61 75 KAT7 Histone acetyltransferase KAT7 yes yes 2 1.0634E-17 192.3 By MS/MS 3 0 1 1 3919200 0 3919200 0 10305 316 10849 44416 36989 36989 1 0 1670700 0 NLQSLITLMEYYSK PVGRSAVGHVFSLEKNLQSLITLMEYYSKE KNLQSLITLMEYYSKEALGDSKSKKSVAYN K N L S K E 0 0 1 0 0 1 1 0 0 1 3 1 1 0 0 2 1 0 2 0 0 0 14 0 1701.8648 Q69YN4 Q69YN4 821 834 KIAA1429 Protein virilizer homolog yes yes 2 3.5581E-08 108.56 By MS/MS 1 0 1 1 0 0 0 0 10306 1468 10850 44417 36990 36990 1 0 0 0 NLQTVNVDEN KLYTLVTYVPVTTFKNLQTVNVDEN_____ VTTFKNLQTVNVDEN_______________ K N L E N - 0 0 3 1 0 1 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 10 0 1144.536 P62899 P62899 116 125 RPL31 60S ribosomal protein L31 yes yes 2 0.0012709 109.71 By MS/MS By MS/MS By MS/MS 8.25 0.433 3 1 1 1 2 353200000 125980000 61504000 165710000 10307 1048 10851 44418;44419;44420;44421 36991;36992;36993 36991 3 108160000 27982000 28160000 NLQTYLQEEDTR SDKNSSVNLKIQVLKNLQTYLQEEDTRMQQ VLKNLQTYLQEEDTRMQQADRDWKKVAKQE K N L T R M 0 1 1 1 0 2 2 0 0 0 2 0 0 0 0 0 2 0 1 0 0 0 12 0 1508.7107 Q6KC79 Q6KC79 2236 2247 NIPBL Nipped-B-like protein yes yes 2 5.7573E-06 160.53 By MS/MS By MS/MS 1 0 2 1 1 22300000 0 4189300 18111000 10308 1480 10852 44422;44423 36994;36995 36995 2 0 2047700 3902200 NLQYYDISAK DRKVKAKSIVFHRKKNLQYYDISAKSNYNF FHRKKNLQYYDISAKSNYNFEKPFLWLARK K N L A K S 1 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 0 0 2 0 0 0 10 0 1213.5979 P62826 P62826 143 152 RAN GTP-binding nuclear protein Ran yes yes 2 0.0018511 107.69 By MS/MS By MS/MS By MS/MS 7.29 1.28 2 3 1 1 1 2 4 416370000 15886000 70790000 329690000 10309 1035 10853 44424;44425;44426;44427;44428;44429;44430 36996;36997;36998;36999 36997 4 34238000 39723000 64972000 NLSDSEKELYIQHAK DSPQEKLKTVKENWKNLSDSEKELYIQHAK NLSDSEKELYIQHAKEDETRYHNEMKSWEE K N L A K E 1 0 1 1 0 1 2 0 1 1 2 2 0 0 0 2 0 0 1 0 0 0 15 1 1773.8897 Q00059 Q00059 191 205 TFAM Transcription factor A, mitochondrial yes yes 2;3;4 2.5371E-06 164.68 By MS/MS 6.33 0.745 1 2 3 6 392330000 0 0 392330000 10310 1120 10854 44431;44432;44433;44434;44435;44436 37000;37001;37002;37003 37002 4 0 0 68792000 NLSDVATKQEGLESVLK SNSPRLVQNCLWTLRNLSDVATKQEGLESV SDVATKQEGLESVLKILVNQLSVDDVNVLT R N L L K I 1 0 1 1 0 1 2 1 0 0 3 2 0 0 0 2 1 0 0 2 0 0 17 1 1829.9735 P14923 P14923 378 394 JUP Junction plakoglobin yes yes 3 0.00064687 82.707 By MS/MS 9.5 0.5 1 1 2 3838200 3838200 0 0 10311 567 10855 44437;44438 37004 37004 1 3041300 0 0 NLSEAQLR INAQELGAALKATGKNLSEAQLRKLISEVD ALKATGKNLSEAQLRKLISEVDSDGDGEIS K N L L R K 1 1 1 0 0 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 8 0 929.49304 Q9NZT1 Q9NZT1 43 50 CALML5 Calmodulin-like protein 5 yes yes 2 1.3734E-06 162.31 By MS/MS By MS/MS 6.38 2.9 1 1 1 1 1 3 1 2 2 10 3 1566400000 1511600000 0 54743000 10312 2107 10856 44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449;44450;44451 37005;37006;37007;37008;37009;37010;37011;37012;37013;37014;37015 37006 11 2089200000 0 101390000 NLSEAQLRK INAQELGAALKATGKNLSEAQLRKLISEVD LKATGKNLSEAQLRKLISEVDSDGDGEISF K N L R K L 1 1 1 0 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 9 1 1057.588 Q9NZT1 Q9NZT1 43 51 CALML5 Calmodulin-like protein 5 yes yes 2 0.0021721 109.01 By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 9 59444000 59444000 0 0 10313 2107 10857 44452;44453;44454;44455;44456;44457;44458;44459;44460 37016;37017;37018 37018 3 88170000 0 0 NLSEEGLLR VSTKCCKKSIVRLVRNLSEEGLLRLYRTTV IVRLVRNLSEEGLLRLYRTTVIQDGIKKKV R N L L R L 0 1 1 0 0 0 2 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 9 0 1029.5455 Q12789 Q12789 665 673 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.032784 76.478 By MS/MS 1.5 0.5 1 1 2 6829900 0 0 6829900 10314 1198 10858 44461;44462 37019 37019 1 0 0 1484500 NLSELQDTSLQQLVSQR TDEGKEINEKSSQLKNLSELQDTSLQQLVS SELQDTSLQQLVSQRHSTPQNKNAVSVHSN K N L Q R H 0 1 1 1 0 4 1 0 0 0 4 0 0 0 0 3 1 0 0 1 0 0 17 0 1958.0069 Q5QJE6 Q5QJE6 322 338 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 3.7392E-92 252.99 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 18603000 0 3556100 15046000 10315 1442 10859 44463;44464;44465 37020;37021;37022 37022 3 0 1601400 3124300 NLSLQNEIAK SVKKTAISLLRNLSRNLSLQNEIAKETLPD RNLSRNLSLQNEIAKETLPDLVSIIPDTVP R N L A K E 1 0 2 0 0 1 1 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 10 0 1128.6139 Q99959 Q99959 759 768 PKP2 Plakophilin-2 yes yes 2 0.02697 79.059 By matching By MS/MS 3 0.816 1 1 1 1 2 25962000 0 4757600 21205000 10316 1870 10860 44466;44467;44468 37023 37023 1 0 2142400 4034900 NLSLSIDER RTRSRSPLGFYVHLKNLSLSIDERDLRNFF FYVHLKNLSLSIDERDLRNFFRGTDLTDEQ K N L E R D 0 1 1 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 1045.5404 Q8IXT5 Q8IXT5 290 298 RBM12B RNA-binding protein 12B yes yes 2 0.054336 70.256 By MS/MS 2 0 1 1 11517000 0 0 11517000 10317 1587 10861 44469 37024 37024 1 0 0 2602500 NLSPVVSNELLEQAFSQFGPVEK LRIRFATHGAALTVKNLSPVVSNELLEQAF ELLEQAFSQFGPVEKAVVVVDDRGRATGKG K N L E K A 1 0 2 0 0 2 3 1 0 0 3 1 0 2 2 3 0 0 0 3 0 0 23 0 2531.2908 Q8WXF1 Q8WXF1 162 184 PSPC1 Paraspeckle component 1 yes yes 2;3 2.128E-93 246.34 By MS/MS By MS/MS 3 0.894 2 1 2 1 4 37336000 0 3144400 34192000 10318 1695 10862 44470;44471;44472;44473;44474 37025;37026;37027 37027 3 0 1043500 6554500 NLSPYVSNELLEEAFSQFGPIER LRVRFATHAAALSVRNLSPYVSNELLEEAF ELLEEAFSQFGPIERAVVIVDDRGRSTGKG R N L E R A 1 1 2 0 0 1 4 1 0 1 3 0 0 2 2 3 0 0 1 1 0 0 23 0 2638.2915 P23246 P23246 377 399 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 1.2885E-247 319.74 By MS/MS By MS/MS 2.4 1.02 2 4 2 2 2 8 638910000 0 1385500 637520000 10319 638 10863 44475;44476;44477;44478;44479;44480;44481;44482;44483;44484 37028;37029;37030;37031;37032;37033;37034;37035 37032 8 0 623900 141760000 NLSSNEAISLEEIR KGFNKVVLKHLKKTKNLSSNEAISLEEIRI KNLSSNEAISLEEIRIRVVQMLGSLGGQIN K N L I R I 1 1 2 0 0 0 3 0 0 2 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1573.7948 P78527 P78527 839 852 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 1.0987E-18 163.12 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 22873000 0 7245600 15627000 10320 1089 10864 44485;44486;44487 37036;37037;37038 37038 3 0 3541500 3367100 NLSTVMDEIHTVLK NMNLQFENQMNKTIRNLSTVMDEIHTVLKK RNLSTVMDEIHTVLKKDNVKNEDKDQKSKE R N L L K K 0 0 1 1 0 0 1 0 1 1 2 1 1 0 0 1 2 0 0 2 0 0 14 0 1598.8338 Q8IX12 Q8IX12 1117 1130 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3 0.013864 59.248 By MS/MS By MS/MS 3.5 2.22 1 2 1 1 1 1 5 14696000 0 1863200 12833000 10321 1579 10865 44488;44489;44490;44491;44492;44493 37039;37040;37041 37040 3 0 839030 2597900 NLSVEDAAR AVYCKFHYKTDQGIKNLSVEDAARLSQEDP TDQGIKNLSVEDAARLSQEDPDYGIRDLFN K N L A R L 2 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 973.48287 P04040 P04040 244 252 CAT Catalase yes yes 2 0.00045394 119.41 By MS/MS 1.5 0.5 1 1 2 10791000 10791000 0 0 10322 408 10866 44494;44495 37042 37042 1 11377000 0 0 NLTEQNSYSNIPHEGK SLSEPAPLTLDTSGKNLTEQNSYSNIPHEG LTEQNSYSNIPHEGKHTPLYERSSPINPAQ K N L G K H 0 0 3 0 0 1 2 1 1 1 1 1 0 0 1 2 1 0 1 0 0 0 16 0 1829.8544 Q9NZB2;Q5T035 Q9NZB2 411 426 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 yes no 2;3 0.0015616 74.772 By MS/MS By MS/MS 2 0 3 1 2 28562000 0 13008000 15554000 10323 2101 10867 44496;44497;44498 37043;37044;37045 37043 3 0 5857600 3514900 NLTLDQMIR CLPLDKYLQWEIGNKNLTLDQMIRILLCLK WEIGNKNLTLDQMIRILLCLKNNGNWQEAL K N L I R I 0 1 1 1 0 1 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 9 0 1102.5805 Q7L0Y3 Q7L0Y3 350 358 TRMT10C Mitochondrial ribonuclease P protein 1 yes yes 2 0.00085891 110.81 By MS/MS 5 0 1 1 11780000 0 11780000 0 10324 1521 10868 44499 37046 37046 1 0 3036500 0 NLTNPNTVIILIGNK RSTYNHLSSWLTDARNLTNPNTVIILIGNK NLTNPNTVIILIGNKADLEAQRDVTYEEAK R N L N K A 0 0 4 0 0 0 0 1 0 3 2 1 0 0 1 0 2 0 0 1 0 0 15 0 1622.9356 P61106 P61106 111 125 RAB14 Ras-related protein Rab-14 yes yes 2 0.00046179 112.15 By matching By MS/MS 7 0 2 1 1 7538100 735140 0 6803000 10325 979 10869 44500;44501 37047 37047 1 1584400 0 1207100 NLTVILSDASAPGEGEHK RYYIADRLNNDPGWKNLTVILSDASAPGEG VILSDASAPGEGEHKIMDYIRRQRAQPNHD K N L H K I 2 0 1 1 0 0 2 2 1 1 2 1 0 0 1 2 1 0 0 1 0 0 18 0 1836.9218 Q9H0D6 Q9H0D6 190 207 XRN2 5-3 exoribonuclease 2 yes yes 2;3 7.2421E-31 203.82 By MS/MS 2 0.707 1 2 1 4 33380000 0 0 33380000 10326 1960 10870 44502;44503;44504;44505 37048;37049 37049 2 0 0 7339400 NLVDNITGQR TETLEKVSITEAMHRNLVDNITGQRLLEAQ EAMHRNLVDNITGQRLLEAQACTGGIIDPS R N L Q R L 0 1 2 1 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1128.5887 Q15149 Q15149 4438 4447 PLEC Plectin yes yes 2 8.057E-07 154.49 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 40323000 0 26540000 13783000 10327 1348 10871 44506;44507;44508 37050;37051;37052 37050 3 0 12663000 2969800 NLVELSFLPGDTGKPDVLSASLEGQLTK GKLLTARVLRLNHQKNLVELSFLPGDTGKP KPDVLSASLEGQLTKQEERKTEAEERDQKG K N L T K Q 1 0 1 2 0 1 2 3 0 0 6 2 0 1 2 3 2 0 0 2 0 0 28 1 2927.5492 Q14690 Q14690 1389 1416 PDCD11 Protein RRP5 homolog yes yes 3 8.9993E-11 84.03 By MS/MS 1.5 0.5 1 1 2 9307200 0 0 9307200 10328 1314 10872 44509;44510 37053 37053 1 0 0 2013600 NLVGETNEETSMR VDQETGEDLNPNRRRNLVGETNEETSMRNP RRNLVGETNEETSMRNPDRPTHLSLVSAPE R N L M R N 0 1 2 0 0 0 3 1 0 0 1 0 1 0 0 1 2 0 0 1 0 0 13 0 1478.6671 Q14562 Q14562 353 365 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 1.8103E-11 180.36 By MS/MS By MS/MS 2 0 2 1 1 12653000 0 3766600 8886100 10329 1304 10873 44511;44512 37054;37055 37055 2 0 1696100 2008100 NLVLLVR DEKNDRTSLNRKLDRNLVLLVREKFGDQDV SLNRKLDRNLVLLVREKFGDQDVWILPQAE R N L V R E 0 1 1 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 2 0 0 7 0 825.54362 Q9H2W6 Q9H2W6 156 162 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 0.019594 103.28 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 14815000 0 3788300 11026000 10330 1977 10874 44513;44514;44515 37056;37057 37057 2 0 1311400 1810000 NLVPGESVYGEK GVFICRGKEDALVTKNLVPGESVYGEKRVS VTKNLVPGESVYGEKRVSISEGDDKIEYRA K N L E K R 0 0 1 0 0 0 2 2 0 0 1 1 0 0 1 1 0 0 1 2 0 0 12 0 1290.6456 P22087 P22087 110 121 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2 0.01302 89.548 By matching By MS/MS By MS/MS 3.86 1.81 1 1 1 1 1 2 1 3 3 388840000 2592000 35042000 351210000 10331 627 10875 44516;44517;44518;44519;44520;44521;44522 37058;37059;37060;37061;37062 37062 5 2592000 12291000 51952000 NLVPGESVYGEKR GVFICRGKEDALVTKNLVPGESVYGEKRVS TKNLVPGESVYGEKRVSISEGDDKIEYRAW K N L K R V 0 1 1 0 0 0 2 2 0 0 1 1 0 0 1 1 0 0 1 2 0 0 13 1 1446.7467 P22087 P22087 110 122 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2;3 6.6611E-05 127.42 By MS/MS By MS/MS 5.67 0.471 2 4 3 3 99809000 0 59362000 40447000 10332 627 10876 44523;44524;44525;44526;44527;44528 37063;37064;37065;37066;37067 37067 5 0 20357000 5926800 NLWVSGLSSTTR IIKDEKGRVGSGSGRNLWVSGLSSTTRATD SGRNLWVSGLSSTTRATDLKNLFSKYGKVV R N L T R A 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 3 2 1 0 1 0 0 12 0 1319.6834 Q14151 Q14151 408 419 SAFB2 Scaffold attachment factor B2 yes yes 2 7.5319E-10 116.52 By MS/MS 2 0 1 1 0 0 0 0 10333 1285 10877 44529 37068 37068 1 0 0 0 NLYHSEAFSINFR NESAKLVDTFLEDVKNLYHSEAFSINFRDA VKNLYHSEAFSINFRDAEEAKKKINDYVEK K N L F R D 1 1 2 0 0 0 1 0 1 1 1 0 0 2 0 2 0 0 1 0 0 0 13 0 1596.7685 CON__P34955 CON__P34955 158 170 yes yes 2;3 1.3621E-57 231.05 By MS/MS By MS/MS By MS/MS 4.8 1.17 2 5 3 4 1 3 6 6 139530000 54606000 32262000 52663000 + 10334 64 10878 44530;44531;44532;44533;44534;44535;44536;44537;44538;44539;44540;44541;44542;44543;44544 37069;37070;37071;37072;37073;37074;37075;37076 37070 8 42692000 10296000 9150700 NLYIISVK PVGAVINCADNTGAKNLYIISVKGIKGRLN ADNTGAKNLYIISVKGIKGRLNRLPAAGVG K N L V K G 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 1 0 0 1 1 0 0 8 0 948.56442 P62829 P62829 36 43 RPL23 60S ribosomal protein L23 yes yes 2 0.038966 75.692 By MS/MS 8 0 1 1 52263000 52263000 0 0 10335 1036 10879 44545 37077 37077 1 44869000 0 0 NLYNNILSDK AFIQHPSLMFEQEVKNLYNNILSDKNSSVN EQEVKNLYNNILSDKNSSVNLKIQVLKNLQ K N L D K N 0 0 3 1 0 0 0 0 0 1 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1192.6088 Q6KC79 Q6KC79 2214 2223 NIPBL Nipped-B-like protein yes yes 2 0.065323 68.847 By MS/MS 1 0 1 1 113600000 0 0 113600000 10336 1480 10880 44546 37078 37078 1 0 0 24478000 NLYSDDIPHALR LSDTNMVDFAMDVYKNLYSDDIPHALREKR VYKNLYSDDIPHALREKRTTVVAQLKQLQA K N L L R E 1 1 1 2 0 0 0 0 1 1 2 0 0 0 1 1 0 0 1 0 0 0 12 0 1412.7048 P60228 P60228 60 71 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 2 0.00061295 123.5 By MS/MS 5 0 1 1 6710400 0 0 6710400 10337 963 10881 44547 37079 37079 1 0 0 935970 NMDAIIVDSEK TQKKYQIAVTKVLGKNMDAIIVDSEKTGRD VLGKNMDAIIVDSEKTGRDCIQYIKEQRGE K N M E K T 1 0 1 2 0 0 1 0 0 2 0 1 1 0 0 1 0 0 0 1 0 0 11 0 1233.5911 Q14683 Q14683 541 551 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.00038565 120.65 By MS/MS By MS/MS 1 0 2 1 1 36196000 0 4007400 32188000 10338 1312 10882 44548;44549 37080;37081 37081 2 0 1958800 6935500 NMDPLNDNIATLLHQSSDK YAGKVDYKADEWLMKNMDPLNDNIATLLHQ LNDNIATLLHQSSDKFVSELWKDVDRIIGL K N M D K F 1 0 3 3 0 1 0 0 1 1 3 1 1 0 1 2 1 0 0 0 0 0 19 0 2125.011 P35579 P35579 588 606 MYH9 Myosin-9 yes yes 2;3 5.5711E-17 180.3 By MS/MS By MS/MS 1.33 0.471 4 2 4 2 148410000 0 111820000 36589000 10339 752 10883;10884 44550;44551;44552;44553;44554;44555 37082;37083;37084;37085;37086 37086 357 5 0 54443000 7883700 NMDPLNDNVATLLHQSSDR YAGKVDYKADEWLMKNMDPLNDNVATLLHQ LNDNVATLLHQSSDRFVAELWKDVDRIVGL K N M D R F 1 1 3 3 0 1 0 0 1 0 3 0 1 0 1 2 1 0 0 1 0 0 19 0 2139.0015 P35580 P35580 595 613 MYH10 Myosin-10 yes yes 2;3 5.1263E-115 266.63 By matching By MS/MS By MS/MS 1.17 0.373 5 1 1 3 2 85444000 1628900 36538000 47276000 10340 753 10885;10886 44556;44557;44558;44559;44560;44561 37087;37088;37089;37090 37090 372 4 1628900 17777000 10186000 NMEKEHMDAINHDTK EAGIKELQKSMERWKNMEKEHMDAINHDTK NMEKEHMDAINHDTKELEKMTNRQGMLLKK K N M T K E 1 0 2 2 0 0 2 0 2 1 0 2 2 0 0 0 1 0 0 0 0 0 15 1 1811.7931 Q9UQE7 Q9UQE7 906 920 SMC3 Structural maintenance of chromosomes protein 3 yes yes 4 0.064333 34.191 By matching By MS/MS 1.33 0.471 2 1 1 2 12374000 107950 0 12266000 10341 2222 10887 44562;44563;44564 37091 37091 1 107950 0 2693500 NMFLVGEGDSVITQVLNK QVIMEKSTMLYNKFKNMFLVGEGDSVITQV LVGEGDSVITQVLNKSLAEQRQHEEANKTK K N M N K S 0 0 2 1 0 1 1 2 0 1 2 1 1 1 0 1 1 0 0 3 0 0 18 0 1963.0085 O75475 O75475 425 442 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 2.721E-09 147.87 By MS/MS By MS/MS 2.81 1.18 3 3 5 4 1 4 12 128570000 0 4875700 123700000 10342 262 10888;10889 44565;44566;44567;44568;44569;44570;44571;44572;44573;44574;44575;44576;44577;44578;44579;44580 37092;37093;37094;37095;37096;37097;37098;37099;37100;37101;37102;37103 37101 102 12 0 1811800 24473000 NMGGPYGGGNYGPGGSGGSGGYGGR SNYGPMKSGNFGGSRNMGGPYGGGNYGPGG YGPGGSGGSGGYGGRSRY____________ R N M G R S 0 1 2 0 0 0 0 14 0 0 0 0 1 0 2 2 0 0 3 0 0 0 25 0 2188.8981 P22626 P22626 326 350 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 1.7394E-257 319.8 By MS/MS By MS/MS By MS/MS 4.9 1.86 3 3 3 6 8 11 6 2 3 24 15 2064700000 54838000 1149300000 860520000 10343 632 10890;10891 44581;44582;44583;44584;44585;44586;44587;44588;44589;44590;44591;44592;44593;44594;44595;44596;44597;44598;44599;44600;44601;44602;44603;44604;44605;44606;44607;44608;44609;44610;44611;44612;44613;44614;44615;44616;44617;44618;44619;44620;44621;44622 37104;37105;37106;37107;37108;37109;37110;37111;37112;37113;37114;37115;37116;37117;37118;37119;37120;37121;37122;37123;37124;37125;37126;37127;37128;37129;37130;37131;37132;37133;37134;37135;37136;37137;37138;37139;37140;37141;37142;37143;37144;37145;37146;37147;37148;37149 37119 281 46 73018000 395400000 128320000 NMINIISR ILRKSLQAERNKPTKNMINIISRLQEVFGH ERNKPTKNMINIISRLQEVFGHAIKAAYPD K N M S R L 0 1 2 0 0 0 0 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 8 0 959.52224 P54136 P54136 72 79 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.053325 77.923 By MS/MS 3 0 1 1 0 0 0 0 10344 927 10892 44623 37150 37150 1 0 0 0 NMLLTLEQEAK NEDLHKLWYVLLKERNMLLTLEQEAKRQRL LKERNMLLTLEQEAKRQRLPMPSPERLDKV R N M A K R 1 0 1 0 0 1 2 0 0 0 3 1 1 0 0 0 1 0 0 0 0 0 11 0 1288.6697 Q9HD33 Q9HD33 110 120 MRPL47 39S ribosomal protein L47, mitochondrial yes yes 2 6.1266E-05 142.92 By MS/MS By MS/MS 7 0 2 1 1 18466000 0 4522500 13944000 10345 2015 10893 44624;44625 37151;37152 37152 2 0 2596900 2474300 NMLTEELYGNTFQLYK IVEYAYNDKAILEQRNMLTEELYGNTFQLY MLTEELYGNTFQLYKSADHRTLDKVLEVQP R N M Y K S 0 0 2 0 0 1 2 1 0 0 3 1 1 1 0 0 2 0 2 0 0 0 16 0 1962.9397 Q15397 Q15397 269 284 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2;3 1.7794E-35 208.74 By MS/MS By MS/MS 3 0.632 1 3 1 2 3 27368000 0 4100900 23267000 10346 1362 10894 44626;44627;44628;44629;44630 37153;37154;37155 37153 3 0 1775600 4415800 NMMAACDPR ALTVPELTQQMFDAKNMMAACDPRHGRYLT QMFDAKNMMAACDPRHGRYLTVAAVFRGRM K N M P R H 2 1 1 1 1 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 9 0 1064.4202 P07437;A6NNZ2;P68371;Q13885;Q9BVA1;P04350;Q13509;Q3ZCM7;Q9BUF5 P68371 298 306 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3;TUBB8;TUBB6 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-6 chain no no 2 0.023813 79.713 By matching By MS/MS By MS/MS 4.8 0.748 2 2 1 1 2 2 126630000 2484400 9062400 115090000 10347 1079;462;1274;414;1254;1905;1415 10895 44631;44632;44633;44634;44635 37156;37157 37156 2 1938300 2496500 16221000 NMPLQHLLEQIK KGLQDSIRKKYPCDKNMPLQHLLEQIKELE CDKNMPLQHLLEQIKELEKEREKILEYKRQ K N M I K E 0 0 1 0 0 2 1 0 1 1 3 1 1 0 1 0 0 0 0 0 0 0 12 0 1462.7966 P15924 P15924 408 419 DSP Desmoplakin yes yes 2;3 0.00071826 121.36 By MS/MS By MS/MS 3 2.67 3 1 1 1 1 2 5 17520000 2040500 0 15480000 10348 572 10896 44636;44637;44638;44639;44640;44641;44642 37158;37159;37160 37160 2 1368200 0 3268300 NMPQADAMVLVAR SCTVNIMFGTPQEHRNMPQADAMVLVARNY HRNMPQADAMVLVARNYERYKNECREKERE R N M A R N 3 1 1 1 0 1 0 0 0 0 1 0 2 0 1 0 0 0 0 2 0 0 13 0 1414.7061 Q9HCD5 Q9HCD5 280 292 NCOA5 Nuclear receptor coactivator 5 yes yes 2 0.00030358 129.85 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 33228000 0 16118000 17110000 10349 2010 10897 44643;44644;44645 37161;37162 37162 2 0 4313200 2386500 NMQDLVEDFK DSIVGERGRLDSELRNMQDLVEDFKNKYED DSELRNMQDLVEDFKNKYEDEINKRTTAEN R N M F K N 0 0 1 2 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 10 0 1237.5649 CON__P13647;P13647 CON__P13647 246 255 KRT5 Keratin, type II cytoskeletal 5 no no 2 7.5638E-07 155.07 By MS/MS By MS/MS 5.38 2.89 3 2 1 2 3 2 1 3 3 1 12 9 304730000 189480000 0 115250000 + 10350 58 10898;10899 44646;44647;44648;44649;44650;44651;44652;44653;44654;44655;44656;44657;44658;44659;44660;44661;44662;44663;44664;44665;44666 37163;37164;37165;37166;37167;37168;37169;37170;37171;37172;37173;37174;37175;37176;37177;37178;37179 37170 46 16 155080000 0 20844000 NMQDLVEDFKNK DSIVGERGRLDSELRNMQDLVEDFKNKYED ELRNMQDLVEDFKNKYEDEINKRTTAENEF R N M N K Y 0 0 2 2 0 1 1 0 0 0 1 2 1 1 0 0 0 0 0 1 0 0 12 1 1479.7028 CON__P13647;P13647 CON__P13647 246 257 KRT5 Keratin, type II cytoskeletal 5 no no 3 0.019576 65.563 By MS/MS 6.67 2.56 1 1 1 1 1 1 6 13746000 13746000 0 0 + 10351 58 10900 44667;44668;44669;44670;44671;44672 37180 37180 1 12449000 0 0 NMQDLVEDLK DSIVGERGRLDSELRNMQDLVEDLKNKYED DSELRNMQDLVEDLKNKYEDEINKRTAAEN R N M L K N 0 0 1 2 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 1 0 0 10 0 1203.5805 CON__P04259;CON__P48668;P48668 CON__P48668 241 250 KRT6C Keratin, type II cytoskeletal 6C no no 2 0.0041296 99.815 By MS/MS By MS/MS 3 1.53 2 1 2 1 4 2 42680000 25914000 0 16766000 + 10352 68;47 10901 44673;44674;44675;44676;44677;44678 37181;37182;37183;37184;37185 37182 5 22410000 0 2931500 NMQDMVEDYR DQLKSDQSRLDSELKNMQDMVEDYRNKYED DSELKNMQDMVEDYRNKYEDEINKRTNAEN K N M Y R N 0 1 1 2 0 1 1 0 0 0 0 0 2 0 0 0 0 0 1 1 0 0 10 0 1299.5224 P04264;CON__P04264 P04264 258 267 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.102E-49 224.36 By MS/MS By MS/MS By MS/MS 5.19 2.94 20 11 14 13 12 13 14 10 12 12 70 15 46 11674000000 8431400000 162280000 3079900000 + 10353 413 10902;10903;10904 44679;44680;44681;44682;44683;44684;44685;44686;44687;44688;44689;44690;44691;44692;44693;44694;44695;44696;44697;44698;44699;44700;44701;44702;44703;44704;44705;44706;44707;44708;44709;44710;44711;44712;44713;44714;44715;44716;44717;44718;44719;44720;44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732;44733;44734;44735;44736;44737;44738;44739;44740;44741;44742;44743;44744;44745;44746;44747;44748;44749;44750;44751;44752;44753;44754;44755;44756;44757;44758;44759;44760;44761;44762;44763;44764;44765;44766;44767;44768;44769;44770;44771;44772;44773;44774;44775;44776;44777;44778;44779;44780;44781;44782;44783;44784;44785;44786;44787;44788;44789;44790;44791;44792;44793;44794;44795;44796;44797;44798;44799;44800;44801;44802;44803;44804;44805;44806;44807;44808;44809 37186;37187;37188;37189;37190;37191;37192;37193;37194;37195;37196;37197;37198;37199;37200;37201;37202;37203;37204;37205;37206;37207;37208;37209;37210;37211;37212;37213;37214;37215;37216;37217;37218;37219;37220;37221;37222;37223;37224;37225;37226;37227;37228;37229;37230;37231;37232;37233;37234;37235;37236;37237;37238;37239;37240;37241;37242;37243;37244;37245;37246;37247;37248;37249;37250;37251;37252;37253;37254;37255;37256;37257;37258;37259;37260;37261;37262;37263;37264;37265;37266;37267;37268;37269;37270;37271;37272;37273;37274;37275;37276;37277;37278;37279;37280;37281;37282;37283;37284;37285;37286;37287;37288;37289;37290;37291;37292;37293;37294;37295;37296;37297;37298;37299;37300;37301;37302;37303;37304;37305;37306 37274 137;138 120 7573100000 79060000 803880000 NMQDMVEDYRNK DQLKSDQSRLDSELKNMQDMVEDYRNKYED ELKNMQDMVEDYRNKYEDEINKRTNAENEF K N M N K Y 0 1 2 2 0 1 1 0 0 0 0 1 2 0 0 0 0 0 1 1 0 0 12 1 1541.6603 P04264;CON__P04264 P04264 258 269 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.030046 58.674 By MS/MS 8 0 1 1 3159500 3159500 0 0 + 10354 413 10905 44810 37307 37307 1 2712500 0 0 NMSGSLYEMVSR NEEEVEKRFEGRLTKNMSGSLYEMVSRVMK LTKNMSGSLYEMVSRVMKALVNRKITVPGN K N M S R V 0 1 1 0 0 0 1 1 0 0 1 0 2 0 0 3 0 0 1 1 0 0 12 0 1372.6115 Q08945 Q08945 305 316 SSRP1 FACT complex subunit SSRP1 yes yes 2 8.1296E-26 204.5 By MS/MS By MS/MS 3.43 0.904 1 3 2 1 4 3 146820000 0 51632000 95188000 10355 1186 10906;10907 44811;44812;44813;44814;44815;44816;44817 37308;37309;37310;37311;37312;37313 37309 567 6 0 21313000 17578000 NMSVHLSPCFR LHYIRKYNRFEKRHKNMSVHLSPCFRDVQI KRHKNMSVHLSPCFRDVQIGDIVTVGECRP K N M F R D 0 1 1 0 1 0 0 0 1 0 1 0 1 1 1 2 0 0 0 1 0 0 11 0 1346.6224 P62280 P62280 108 118 RPS11 40S ribosomal protein S11 yes yes 2;3 0.0018727 109.29 By matching By MS/MS 7.2 0.4 4 1 1 4 74911000 1563900 0 73347000 10356 1017 10908;10909 44818;44819;44820;44821;44822 37314;37315;37316 37315 485 3 3370600 0 12901000 NMSVIAHVDHGK VDQIRAIMDKKANIRNMSVIAHVDHGKSTL NIRNMSVIAHVDHGKSTLTDSLVCKAGIIA R N M G K S 1 0 1 1 0 0 0 1 2 1 0 1 1 0 0 1 0 0 0 2 0 0 12 0 1306.6452 P13639 P13639 21 32 EEF2 Elongation factor 2 yes yes 2;3 0.0013897 98.156 By MS/MS By MS/MS By MS/MS 4.71 3.06 1 4 2 1 1 1 1 1 2 4 6 4 57840000 15067000 23070000 19702000 10357 547 10910 44823;44824;44825;44826;44827;44828;44829;44830;44831;44832;44833;44834;44835;44836 37317;37318;37319;37320;37321;37322;37323;37324 37319 8 16003000 17525000 5625300 NMTPSPFLR QIQYKNPWVQIMMFKNMTPSPFLRFYLDSG QIMMFKNMTPSPFLRFYLDSGEQVLVDVET K N M L R F 0 1 1 0 0 0 0 0 0 0 1 0 1 1 2 1 1 0 0 0 0 0 9 0 1061.5328 P82663 P82663 69 77 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 2 0.0043007 98.299 By MS/MS 7 0 1 1 5417700 0 5417700 0 10358 1097 10911 44837 37325 37325 1 0 3110900 0 NMVDYHLIMDMIPAISR LFLPYDLKRLEMYSRNMVDYHLIMDMIPAI VDYHLIMDMIPAISRIYFLNQLGDLALSAA R N M S R I 1 1 1 2 0 0 0 0 1 3 1 0 3 0 1 1 0 0 1 1 0 0 17 0 2017.9788 Q9H0A0 Q9H0A0 831 847 NAT10 N-acetyltransferase 10 yes yes 2;3 1.6455E-06 119.8 By MS/MS By MS/MS 2.5 0.764 4 1 1 2 4 9534000 0 2613700 6920400 10359 1959 10912;10913 44838;44839;44840;44841;44842;44843 37326;37327;37328;37329 37328 685 4 0 1177000 1475800 NMVLFTR KSYHQAHKATGGPLKNMVLFTRQRLSIQPL KATGGPLKNMVLFTRQRLSIQPLTQEEFDF K N M T R Q 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 7 0 879.46366 Q9P016 Q9P016 194 200 THYN1 Thymocyte nuclear protein 1 yes yes 2 0.066635 73.324 By matching By MS/MS 6.33 0.471 2 1 1 2 15345000 0 2218400 13126000 10360 2111 10914 44844;44845;44846 37330 37330 1 0 767950 2137800 NNASTDYDLSDK KIGQGYLIKDGKLIKNNASTDYDLSDKSIN LIKNNASTDYDLSDKSINPLGGFVHYGEVT K N N D K S 1 0 2 3 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 12 0 1341.5685 P39023 P39023 301 312 RPL3 60S ribosomal protein L3 yes yes 2 7.6327E-06 159.4 By MS/MS By MS/MS 5.75 1.92 1 2 1 1 3 164210000 0 47734000 116480000 10361 778 10915 44847;44848;44849;44850 37331;37332;37333 37331 3 0 12304000 16985000 NNAYLAQSPQLYK ASEGGANVFTVSYFKNNAYLAQSPQLYKQM FKNNAYLAQSPQLYKQMCICADFEKVFSIG K N N Y K Q 2 0 2 0 0 2 0 0 0 0 2 1 0 0 1 1 0 0 2 0 0 0 13 0 1508.7623 P14868 P14868 242 254 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 0.0028611 106.35 By MS/MS 4 0 1 1 4397400 0 4397400 0 10362 566 10916 44851 37334 37334 1 0 1459300 0 NNEDISIIPPLFTVSVDHR FFDEESYSLLRKAQRNNEDISIIPPLFTVS ISIIPPLFTVSVDHRGTWNGPWVSTEVLAA R N N H R G 0 1 2 2 0 0 1 0 1 3 1 0 0 1 2 2 1 0 0 2 0 0 19 0 2165.1117 P51571 P51571 121 139 SSR4 Translocon-associated protein subunit delta yes yes 3 0.00031844 74.744 By MS/MS 8 0 1 1 12793000 0 0 12793000 10363 895 10917 44852 37335 37335 1 0 0 1961400 NNEGTYYSPNYNPQSR AYPLSIEPIGVRFNKNNEGTYYSPNYNPQS NEGTYYSPNYNPQSRSVPPSASHVAPTETF K N N S R S 0 1 4 0 0 1 1 1 0 0 0 0 0 0 2 2 1 0 3 0 0 0 16 0 1902.8133 P00450 P00450 485 500 CP Ceruloplasmin yes yes 2 0.002015 89.959 By MS/MS 9 0 1 1 2359100 2359100 0 0 10364 360 10918 44853 37336 37336 1 1324200 0 0 NNEPLTHAMYNLASLR ALACKKLKSLGLVDRNNEPLTHAMYNLASL NEPLTHAMYNLASLRELGETQRRPCTIQVP R N N L R E 2 1 3 0 0 0 1 0 1 0 3 0 1 0 1 1 1 0 1 0 0 0 16 0 1842.9047 Q7L2E3 Q7L2E3 321 336 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 3.9287E-05 134.21 By MS/MS 2 0 1 1 10842000 0 0 10842000 10365 1522 10919 44854 37337 37337 1 0 0 2450000 NNFAVGYR GYQMTFDSAKSKLTRNNFAVGYRTGDFQLH AKSKLTRNNFAVGYRTGDFQLHTNVNDGTE R N N Y R T 1 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 0 8 0 939.45626 P45880 P45880 178 185 VDAC2 Voltage-dependent anion-selective channel protein 2 yes yes 2 0.00052101 128.75 By matching By MS/MS 6 0 2 1 1 21636000 4203000 0 17433000 10366 819 10920 44855;44856 37338 37338 1 5596300 0 2608100 NNISSGHVPHGPLTRPSEQLDYLSR LLYGGTSPTAETILKNNISSGHVPHGPLTR GPLTRPSEQLDYLSRVQGFQVEYKDFPKNN K N N S R V 0 2 2 1 0 1 1 2 2 1 3 0 0 0 3 4 1 0 1 1 0 0 25 1 2773.3896 O95793 O95793 474 498 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 3;4;5 1.1753E-28 133.27 By matching By MS/MS By MS/MS 3.83 0.373 1 5 1 1 4 63707000 5398700 17703000 40606000 10367 341 10921 44857;44858;44859;44860;44861;44862 37339;37340;37341;37342 37341 4 4212000 5874800 6814700 NNLAGAEELFAR NVLQNPDLALRMAVRNNLAGAEELFARKFN AVRNNLAGAEELFARKFNALFAQGNYSEAA R N N A R K 3 1 2 0 0 0 2 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 12 0 1303.6521 Q00610 Q00610 355 366 CLTC Clathrin heavy chain 1 yes yes 2 3.1852E-05 150.27 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 144470000 0 48410000 96055000 10368 1125 10922 44863;44864;44865;44866;44867 37343;37344;37345;37346;37347 37346 5 0 22523000 20794000 NNLEALEDFEK GKPVRGVKLVGRDPKNNLEALEDFEKAAGA RDPKNNLEALEDFEKAAGARGLSTESILIP K N N E K A 1 0 2 1 0 0 3 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 11 0 1320.6198 P31025 P31025 140 150 LCN1 Lipocalin-1 yes yes 2 5.0261E-08 163.16 By MS/MS 5.55 2.74 1 1 1 1 1 2 1 1 1 1 11 1577800000 1577800000 0 0 10369 716 10923 44868;44869;44870;44871;44872;44873;44874;44875;44876;44877;44878 37348;37349;37350;37351;37352;37353;37354;37355;37356;37357;37358;37359;37360 37356 13 1412500000 0 0 NNLEALLQDLR MALTYEEKPPYAMLRNNLEALLQDLRVSPY AMLRNNLEALLQDLRVSPYDPIGLPMVP__ R N N L R V 1 1 2 1 0 1 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 11 0 1297.699 Q8IV63 Q8IV63 451 461 VRK3 Inactive serine/threonine-protein kinase VRK3 yes yes 2 0.0003272 122.26 By MS/MS 4.5 0.5 1 1 2 6280400 0 0 6280400 10370 1569 10924 44879;44880 37361 37361 1 0 0 991280 NNLRDWLR SKRYLKYLTKKYLKKNNLRDWLRVVANSKE TKKYLKKNNLRDWLRVVANSKESYELRYFQ K N N L R V 0 2 2 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 8 1 1085.573 P35268;Q6P5R6 P35268 94 101 RPL22;RPL22L1 60S ribosomal protein L22;60S ribosomal protein L22-like 1 yes no 2 0.0098181 125.5 By MS/MS 8 0 1 1 9336400 0 0 9336400 10371 747 10925 44881 37362 37362 0 0 0 1431400 NNNDNIFLSPLSISTAFAMTK SHFATAFYQHLADSKNNNDNIFLSPLSIST FLSPLSISTAFAMTKLGACNNTLKQLMEVF K N N T K L 2 0 4 1 0 0 0 0 0 2 2 1 1 2 1 3 2 0 0 0 0 0 21 0 2297.1362 CON__P41361 CON__P41361 104 124 yes yes 3 0.0034233 52.061 By MS/MS 3 0 1 1 5722900 0 0 5722900 + 10372 67 10926 44882 37363 37363 1 0 0 1110000 NNPHYDPSSKEDNPK KIVKEAYPDHTQFEKNNPHYDPSSKEDNPK NNPHYDPSSKEDNPKWSMVDVQFVRMMKRF K N N P K W 0 0 3 2 0 0 1 0 1 0 0 2 0 0 3 2 0 0 1 0 0 0 15 1 1740.7703 Q9P016 Q9P016 143 157 THYN1 Thymocyte nuclear protein 1 yes yes 3 0.055421 41.378 By matching By MS/MS 6 0 2 1 1 1435400 0 742980 692430 10373 2111 10927 44883;44884 37364 37364 1 0 257190 103590 NNPSKPLHVIK LLSVSLSGYINYLDRNNPSKPLHVIKGHSK YLDRNNPSKPLHVIKGHSKSIQCLTVHKNG R N N I K G 0 0 2 0 0 0 0 0 1 1 1 2 0 0 2 1 0 0 0 1 0 0 11 1 1245.7194 O75083 O75083 307 317 WDR1 WD repeat-containing protein 1 yes yes 3 0.061954 46.796 By MS/MS 4 0 1 1 2937200 0 2937200 0 10374 241 10928 44885 37365 37365 1 0 974740 0 NNQFQALLQYADPVNAHYAK FSKFGTVLKIITFTKNNQFQALLQYADPVN ALLQYADPVNAHYAKMALDGQNIYNACCTL K N N A K M 4 0 3 1 0 3 0 0 1 0 2 1 0 1 1 0 0 0 2 1 0 0 20 0 2304.1287 O95758 O95758 217 236 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 3 2.5203E-08 108.49 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 49544000 0 27935000 21609000 10375 337 10929 44886;44887;44888;44889 37366;37367;37368;37369 37367 4 0 8279300 3265200 NNQFQALLQYADPVSAQHAK FSKFGTVLKIITFTKNNQFQALLQYADPVS ALLQYADPVSAQHAKLSLDGQNIYNACCTL K N N A K L 4 0 2 1 0 4 0 0 1 0 2 1 0 1 1 1 0 0 1 1 0 0 20 0 2242.1131 P26599 P26599 219 238 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3;4 6.2731E-212 308.74 By MS/MS By MS/MS 4.11 1.8 2 2 3 4 3 3 2 7 12 744080000 0 137680000 606400000 10376 671 10930 44890;44891;44892;44893;44894;44895;44896;44897;44898;44899;44900;44901;44902;44903;44904;44905;44906;44907;44908 37370;37371;37372;37373;37374;37375;37376;37377;37378;37379;37380;37381;37382;37383;37384;37385 37374 16 0 50893000 103600000 NNQGQLIAEPFYHLPSK SNPFYQLYDTVRSCRNNQGQLIAEPFYHLP QGQLIAEPFYHLPSKKKYPDYYQQIKMPIS R N N S K K 1 0 2 0 0 2 1 1 1 1 2 1 0 1 2 1 0 0 1 0 0 0 17 0 1954.9901 Q86U86 Q86U86 398 414 PBRM1 Protein polybromo-1 yes yes 3 0.015175 47.942 By MS/MS 1 0 1 1 13769000 0 0 13769000 10377 1545 10931 44909 37386 37386 1 0 0 2966800 NNQNPWTFER GTLEKMRKDQEERERNNQNPWTFERIATAN EERERNNQNPWTFERIATANMLGIRKVLSP R N N E R I 0 1 3 0 0 1 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 10 0 1304.5898 Q9NX20 Q9NX20 208 217 MRPL16 39S ribosomal protein L16, mitochondrial yes yes 2 1.7464E-38 168.27 By MS/MS By MS/MS 7 0 2 1 1 3504600 0 3504600 0 10378 2083 10932 44910;44911 37387;37388 37388 2 0 2012400 0 NNRPSEGPLQTR NLIQQCTAFLLDALKNNRPSEGPLQTRLLE ALKNNRPSEGPLQTRLLEMNLMHAPQVADA K N N T R L 0 2 2 0 0 1 1 1 0 0 1 0 0 0 2 1 1 0 0 0 0 0 12 1 1367.6906 Q00610 Q00610 572 583 CLTC Clathrin heavy chain 1 yes yes 3 0.0051109 83.243 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 13464000 0 3763500 9700700 10379 1125 10933 44912;44913;44914 37389;37390 37389 2 0 1839500 2102300 NNRQPYAVSELAGHQTSAESWGTGR IRPDIVNFVHTNLRKNNRQPYAVSELAGHQ LAGHQTSAESWGTGRAVARIPRVRGGGTHR K N N G R A 3 2 2 0 0 2 2 3 1 0 1 0 0 0 1 3 2 1 1 1 0 0 25 1 2715.275 P36578 P36578 47 71 RPL4 60S ribosomal protein L4 yes yes 4 1.2746E-28 137.26 By MS/MS 4.5 0.5 1 1 2 23769000 0 23769000 0 10380 762 10934 44915;44916 37391 37391 1 0 6889000 0 NNSDKDQSLGNWR SIEEIDLEGKFVQLKNNSDKDQSLGNWRIK LKNNSDKDQSLGNWRIKRQVLEGEEIAYKF K N N W R I 0 1 3 2 0 1 0 1 0 0 1 1 0 0 0 2 0 1 0 0 0 0 13 1 1532.6968 Q03252 Q03252 490 502 LMNB2 Lamin-B2 yes yes 2;3 2.3923E-57 236.92 By MS/MS By MS/MS 3.17 0.687 1 3 2 2 4 139040000 0 17325000 121710000 10381 1156 10935 44917;44918;44919;44920;44921;44922 37392;37393;37394 37394 3 0 7411600 23119000 NNSFVNEIISR ITIKLKQLKAEVIAKNNSFVNEIISRIKVT VIAKNNSFVNEIISRIKVTT__________ K N N S R I 0 1 3 0 0 0 1 0 0 2 0 0 0 1 0 2 0 0 0 1 0 0 11 0 1291.6521 P43246 P43246 919 929 MSH2 DNA mismatch repair protein Msh2 yes yes 2 0.00032777 126.31 By MS/MS 2 0 1 1 11452000 0 0 11452000 10382 813 10936 44923 37395 37395 1 0 0 2587900 NNTVGLIQLNRPK SGANFEYIIAEKRGKNNTVGLIQLNRPKAL GKNNTVGLIQLNRPKALNALCDGLIDELNQ K N N P K A 0 1 3 0 0 1 0 1 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 1 1465.8365 P30084 P30084 44 56 ECHS1 Enoyl-CoA hydratase, mitochondrial yes yes 2;3 0.0029386 125.97 By matching By MS/MS 7 0 4 2 2 22593000 0 4168400 18424000 10383 709 10937 44924;44925;44926;44927 37396;37397 37396 2 0 2393500 3269300 NNVNVASLTQSEIR EVQLKDLILADYGKKNNVNVASLTQSEIRD KNNVNVASLTQSEIRDIILGMEISAPSQQR K N N I R D 1 1 3 0 0 1 1 0 0 1 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1543.7954 Q6P2Q9 Q6P2Q9 1995 2008 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 2.9178E-107 268.77 By matching By MS/MS By MS/MS 1 0 3 1 1 1 33846000 1264900 14086000 18495000 10384 1490 10938 44928;44929;44930 37398;37399 37398 2 1264900 6885000 3985000 NNVVINYK RLIVDHNIADYMTAKNNVVINYKDMNHTNS ADYMTAKNNVVINYKDMNHTNSYGIIRGLQ K N N Y K D 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 8 0 962.51853 Q6P2Q9 Q6P2Q9 1013 1020 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00079071 124.89 By MS/MS 1 0 1 1 13972000 0 13972000 0 10385 1490 10939 44931 37400 37400 1 0 6829100 0 NNYDEEIISLK AKRRWEYENELSKVRNNYDEEIISLKNQFE SKVRNNYDEEIISLKNQFETEINITKTTIH R N N L K N 0 0 2 1 0 0 2 0 0 2 1 1 0 0 0 1 0 0 1 0 0 0 11 0 1336.6511 P15924 P15924 1353 1363 DSP Desmoplakin yes yes 2 0.0068885 97.277 By MS/MS 1 0 1 1 11884000 0 11884000 0 10386 572 10940 44932 37401 37401 1 0 5808900 0 NPAPPIDAVEQILPTLVR LRNLTWTLSNLCRNKNPAPPIDAVEQILPT PPIDAVEQILPTLVRLLHHDDPEVLADTCW K N P V R L 2 1 1 1 0 1 1 0 0 2 2 0 0 0 4 0 1 0 0 2 0 0 18 0 1942.0888 P52292 P52292 241 258 KPNA2 Importin subunit alpha-1 yes yes 2;3 2.6596E-09 155.08 By MS/MS By MS/MS 4.2 1.33 1 2 4 3 4 6 57387000 0 17748000 39639000 10387 903 10941 44933;44934;44935;44936;44937;44938;44939;44940;44941;44942 37402;37403;37404;37405;37406;37407;37408;37409;37410 37408 9 0 5930000 6648100 NPASPYNLAYK LIRKTRTILEAKQAKNPASPYNLAYKYNFE KQAKNPASPYNLAYKYNFEYSVVFNMVLWI K N P Y K Y 2 0 2 0 0 0 0 0 0 0 1 1 0 0 2 1 0 0 2 0 0 0 11 0 1236.6139 O75787 O75787 288 298 ATP6AP2 Renin receptor yes yes 2 0.00032806 128.38 By matching By matching By MS/MS 9.67 0.471 1 2 1 1 1 71469000 4297300 7056800 60115000 10388 283 10942 44943;44944;44945 37411 37411 1 2412100 35701000 131480000 NPDDITNEEYGEFYK IDQEELNKTKPIWTRNPDDITNEEYGEFYK NPDDITNEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 2 2 0 0 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1832.7741 P07900 P07900 300 314 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 9.9504E-35 213.73 By MS/MS By matching By MS/MS 2.5 0.5 2 2 1 1 2 29372000 5330100 2857800 21184000 10389 466 10943 44946;44947;44948;44949 37412;37413;37414 37412 3 6149700 1286900 4361600 NPDDITQEEYGEFYK IDQEELNKTKPIWTRNPDDITQEEYGEFYK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF R N P Y K S 0 0 1 2 0 1 3 1 0 1 0 1 0 1 1 0 1 0 2 0 0 0 15 0 1846.7897 P08238 P08238 292 306 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 2.0412E-107 262 By MS/MS By MS/MS By MS/MS 4.5 3.2 1 2 1 1 1 2 26392000 7855100 3282800 15254000 10390 469 10944 44950;44951;44952;44953 37415;37416;37417;37418 37415 4 9063000 1478300 5742400 NPDDPDTVDVIMHMLDR ELKELLEKELHPVLKNPDDPDTVDVIMHML DDPDTVDVIMHMLDRDHDRRLDFTEFLLMI K N P D R D 0 1 1 5 0 0 0 0 1 1 1 0 2 0 2 0 1 0 0 2 0 0 17 0 1981.8874 CON__Q5D862;Q5D862 CON__Q5D862 47 63 FLG2 Filaggrin-2 yes no 3 0.00023917 91.457 By MS/MS By MS/MS 5.58 2.43 1 1 2 1 3 1 1 2 5 7 30329000 7122800 0 23206000 + 10391 90 10945 44954;44955;44956;44957;44958;44959;44960;44961;44962;44963;44964;44965 37419;37420;37421;37422;37423;37424;37425;37426;37427 37421 9 5745400 0 4071200 NPDGSLSQAAMMQSALAK HTKQSMDMSPIKIVKNPDGSLSQAAMMQSA GSLSQAAMMQSALAKERRELKQAQREAEMD K N P A K E 4 0 1 1 0 2 0 1 0 0 2 1 2 0 1 3 0 0 0 0 0 0 18 0 1818.8604 Q14562 Q14562 467 484 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 1.813E-40 213.99 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 20053000 0 6791800 13261000 10392 1304 10946 44966;44967;44968;44969 37428;37429 37428 2 0 3058500 2908500 NPDIPNPALAQR EILYYRKTIGYKVPRNPDIPNPALAQREEQ VPRNPDIPNPALAQREEQKKIDGAEPLTPE R N P Q R E 2 1 2 1 0 1 0 0 0 1 1 0 0 0 3 0 0 0 0 0 0 0 12 0 1304.6837 P28370 P28370 818 829 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.0014064 113.62 By MS/MS By MS/MS 2 0 2 1 1 19840000 0 6026600 13813000 10393 693 10947 44970;44971 37430;37431 37430 1 0 2713900 3121500 NPDLGFSDYAAAQLR SAEDAERWERKKKRKNPDLGFSDYAAAQLR NPDLGFSDYAAAQLRQYHRLTKQIKPDMET K N P L R Q 3 1 1 2 0 1 0 1 0 0 2 0 0 1 1 1 0 0 1 0 0 0 15 0 1636.7845 O95926 O95926 119 133 SYF2 Pre-mRNA-splicing factor SYF2 yes yes 2 0.00028933 124.42 By MS/MS 6 0 1 1 5212900 0 0 5212900 10394 348 10948 44972 37432 37432 1 0 0 779900 NPDQVYLVDYGLAYR VHGDIKASNLLLNYKNPDQVYLVDYGLAYR NPDQVYLVDYGLAYRYCPEGVHKEYKEDPK K N P Y R Y 1 1 1 2 0 1 0 1 0 0 2 0 0 0 1 0 0 0 3 2 0 0 15 0 1784.8733 Q99986 Q99986 189 203 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2;3 2.2654E-74 248.98 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 106310000 0 12555000 93755000 10395 1871 10949 44973;44974;44975;44976 37433;37434;37435 37434 3 0 3236300 13490000 NPDTQWITK FEVILIDPFHKAIRRNPDTQWITKPVHKHR HKAIRRNPDTQWITKPVHKHREMRGLTSAG R N P T K P 0 0 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 9 0 1101.5455 P61313 P61313 145 153 RPL15 60S ribosomal protein L15 yes yes 2 0.00058001 116.73 By MS/MS By MS/MS 7 0 2 1 1 46830000 0 13279000 33551000 10396 991 10950 44977;44978 37436;37437 37436 2 0 7624600 5953400 NPDTQWITKPVHK FEVILIDPFHKAIRRNPDTQWITKPVHKHR RRNPDTQWITKPVHKHREMRGLTSAGRKSR R N P H K H 0 0 1 1 0 1 0 0 1 1 0 2 0 0 2 0 2 1 0 1 0 0 13 1 1562.8205 P61313 P61313 145 157 RPL15 60S ribosomal protein L15 yes yes 2;3 9.9339E-17 193.83 By MS/MS By MS/MS 7 0 3 1 2 215580000 0 6274200 209310000 10397 991 10951 44979;44980;44981 37438;37439;37440 37440 3 0 3602700 37140000 NPEILAIAPVLLDALTDPSR KAGQQALRQIGSVIRNPEILAIAPVLLDAL AIAPVLLDALTDPSRKTQKCLQTLLDTKFV R N P S R K 3 1 1 2 0 0 1 0 0 2 4 0 0 0 3 1 1 0 0 1 0 0 20 0 2117.1732 Q92616 Q92616 1571 1590 GCN1L1 Translational activator GCN1 yes yes 2 2.5047E-10 113.76 By MS/MS 1 0 1 1 2683900 0 0 2683900 10398 1712 10952 44982 37441 37441 1 0 0 578290 NPELPNAAQAQK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ VPRNPELPNAAQAQKEEQLKIDEAESLNDE R N P Q K E 3 0 2 0 0 2 1 0 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 0 1279.6521 O60264 O60264 803 814 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.0016003 111.46 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 21163000 0 8380800 12782000 10399 223 10953 44983;44984;44985 37442;37443 37442 1 0 3861500 2888500 NPELPNAAQAQKEEQLK EILFYRKTIGYKVPRNPELPNAAQAQKEEQ ELPNAAQAQKEEQLKIDEAESLNDEELEEK R N P L K I 3 0 2 0 0 3 3 0 0 0 2 2 0 0 2 0 0 0 0 0 0 0 17 1 1906.9749 O60264 O60264 803 819 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 2.7807E-06 110.37 By MS/MS 1.67 0.471 1 2 3 43269000 0 0 43269000 10400 223 10954 44986;44987;44988 37444;37445 37444 2 0 0 9702700 NPELSTQLIDIIHTAAAR WLAGLPLQLAHLGSRNPELSTQLIDIIHTA LSTQLIDIIHTAAARANKELLKSLQATALR R N P A R A 3 1 1 1 0 1 1 0 1 3 2 0 0 0 1 1 2 0 0 0 0 0 18 0 1962.0534 Q9NXF1 Q9NXF1 566 583 TEX10 Testis-expressed sequence 10 protein yes yes 2;3 2.9559E-65 237.21 By MS/MS By MS/MS 2.17 0.687 1 3 2 2 4 57758000 0 11371000 46387000 10401 2089 10955 44989;44990;44991;44992;44993;44994 37446;37447;37448;37449 37449 4 0 5120600 9535500 NPEPELLVR VGLSFCGADVGGFFKNPEPELLVRWYQMGA VGGFFKNPEPELLVRWYQMGAYQPFFRAHA K N P V R W 0 1 1 0 0 0 2 0 0 0 2 0 0 0 2 0 0 0 0 1 0 0 9 0 1065.5819 Q14697 Q14697 654 662 GANAB Neutral alpha-glucosidase AB yes yes 2 0.0025346 103.56 By MS/MS 2 0 1 1 9308900 0 0 9308900 10402 1317 10956 44995 37450 37450 1 0 0 2103600 NPEQVDLYQFMAK SITANYTDQWERWWKNPEQVDLYQFMAKDN WKNPEQVDLYQFMAKDNVPFHSLVFPCSAL K N P A K D 1 0 1 1 0 2 1 0 0 0 1 1 1 1 1 0 0 0 1 1 0 0 13 0 1581.7497 P56192 P56192 542 554 MARS Methionine--tRNA ligase, cytoplasmic yes yes 2 0.038447 92.538 By MS/MS 2 0 1 1 3176500 0 3176500 0 10403 949 10957 44996 37451 37451 0 0 1430400 0 NPEVGLKPVWYSPK PEAQEEMKEVAKHPKNPEVGLKPVWYSPKV KNPEVGLKPVWYSPKVFIEGADAETFSEGE K N P P K V 0 0 1 0 0 0 1 1 0 0 1 2 0 0 3 1 0 1 1 2 0 0 14 1 1612.8613 P07814 P07814 536 549 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2;3 0.0029118 130.15 By MS/MS 1.33 0.471 2 1 3 14966000 0 0 14966000 10404 465 10958 44997;44998;44999 37452;37453 37452 2 0 0 3252600 NPEVPVNFAEFSK YAFFVQTCREEHKKKNPEVPVNFAEFSKKC KKNPEVPVNFAEFSKKCSERWKTMSGKEKS K N P S K K 1 0 2 0 0 0 2 0 0 0 0 1 0 2 2 1 0 0 0 2 0 0 13 0 1476.7249 O15347 O15347 31 43 HMGB3 High mobility group protein B3 yes yes 2 0.00030422 129.82 By MS/MS By MS/MS 7 0 3 1 2 107470000 0 11548000 95917000 10405 176 10959 45000;45001;45002 37454;37455 37454 2 0 6631000 17020000 NPFDTFFGQR HGDPHAMFAEFFGGRNPFDTFFGQRNGEEG FFGGRNPFDTFFGQRNGEEGMDIDDPFSGF R N P Q R N 0 1 1 1 0 1 0 1 0 0 0 0 0 3 1 0 1 0 0 0 0 0 10 0 1227.5673 P25685 P25685 110 119 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2 7.3714E-11 167.24 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 18908000 0 6230900 12677000 10406 660 10960 45003;45004;45005;45006 37456;37457;37458;37459 37457 4 0 2102600 1768200 NPGLWLESVR RARAILEKSRLKNPKNPGLWLESVRLEYRA LKNPKNPGLWLESVRLEYRAGLKNIANTLM K N P V R L 0 1 1 0 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 1 0 0 10 0 1169.6193 O94906 O94906 776 785 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.00012214 144.9 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 4 2 75645000 0 26071000 49574000 10407 305 10961 45007;45008;45009;45010;45011;45012 37460;37461;37462 37461 3 0 11377000 10791000 NPHPSSAFLNLIGFVSR VGVGRAGSVRMRDLRNPHPSSAFLNLIGFV HPSSAFLNLIGFVSRRELGSIDGVQQISLE R N P S R R 1 1 2 0 0 0 0 1 1 1 2 0 0 2 2 3 0 0 0 1 0 0 17 0 1854.9741 P53004 P53004 29 45 BLVRA Biliverdin reductase A yes yes 3 0.00063949 79.013 By MS/MS By MS/MS 6 0 2 1 1 5042800 0 1108300 3934600 10408 917 10962 45013;45014 37463;37464 37464 2 0 383640 588650 NPIHAIGLLIR ENVMEDICSKLQEIRNPIHAIGLLIREMDY QEIRNPIHAIGLLIREMDYETEVEMEKGFN R N P I R E 1 1 1 0 0 0 0 1 1 3 2 0 0 0 1 0 0 0 0 0 0 0 11 0 1215.7452 Q12769 Q12769 667 677 NUP160 Nuclear pore complex protein Nup160 yes yes 3 0.065035 39.785 By MS/MS 1.5 0.5 1 1 2 5561300 0 0 5561300 10409 1196 10963 45015;45016 37465 37465 1 0 0 1236100 NPILWNVADVVIK GTYTLYLIIGDATLKNPILWNVADVVIKFP LKNPILWNVADVVIKFPEEEAPSTVLSQNL K N P I K F 1 0 2 1 0 0 0 0 0 2 1 1 0 0 1 0 0 1 0 3 0 0 13 0 1479.8449 P04844 P04844 492 504 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 0.044552 70.412 By matching By MS/MS 3 0 2 1 1 4137000 1325100 0 2811900 10410 420 10964 45017;45018 37466 37466 1 1528900 0 545370 NPLIINSIIDK GGLMFNTGIGQHILKNPLIINSIIDKAALR HILKNPLIINSIIDKAALRPTDVVLEVGPG K N P D K A 0 0 2 1 0 0 0 0 0 4 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1238.7234 Q9UNQ2 Q9UNQ2 41 51 DIMT1 Probable dimethyladenosine transferase yes yes 2 0.00032842 130.98 By MS/MS By MS/MS 6 0 2 1 1 17887000 0 7490600 10397000 10411 2210 10965 45019;45020 37467;37468 37467 2 0 2593000 1555500 NPLPPSVGVVDKK AAGKQLRKESQKDRKNPLPPSVGVVDKKEE RKNPLPPSVGVVDKKEETQPPVALKKEGIR K N P K K E 0 0 1 1 0 0 0 1 0 0 1 2 0 0 3 1 0 0 0 3 0 0 13 1 1348.7715 Q8NC51 Q8NC51 80 92 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.010773 66.285 By MS/MS 4 0 1 1 11337000 0 0 11337000 10412 1630 10966 45021 37469 37469 1 0 0 1851700 NPLPVTLTNVVFR AAVVGQECEVQIVFKNPLPVTLTNVVFRLE FKNPLPVTLTNVVFRLEGSGLQRPKILNVG K N P F R L 0 1 2 0 0 0 0 0 0 0 2 0 0 1 2 0 2 0 0 3 0 0 13 0 1468.8402 P22735 P22735 715 727 TGM1 Protein-glutamine gamma-glutamyltransferase K yes yes 2 0.0067319 95.573 By MS/MS By matching 6.11 3.21 1 1 1 1 2 1 2 7 2 18068000 15940000 0 2127800 10413 636 10967 45022;45023;45024;45025;45026;45027;45028;45029;45030 37470;37471;37472 37472 3 18099000 0 1285400 NPMYIHTSVSQDFSR SSSLNSGNYLNPACRNPMYIHTSVSQDFSR NPMYIHTSVSQDFSRSVPGTTSSPLVGDIS R N P S R S 0 1 1 1 0 1 0 0 1 1 0 0 1 1 1 3 1 0 1 1 0 0 15 0 1780.8203 Q9UQR0 Q9UQR0 561 575 SCML2 Sex comb on midleg-like protein 2 yes yes 3 0.0082985 61.097 By MS/MS By MS/MS 3 0 2 1 1 12371000 0 5213700 7157300 10414 2224 10968 45031;45032 37473;37474 37473 2 0 2222600 1388200 NPNAMLVNLEEPLASTYQDILYQAK AIDRRIPADTFAALKNPNAMLVNLEEPLAS EPLASTYQDILYQAKQDKMTNAKNRTENSE K N P A K Q 3 0 3 1 0 2 2 0 0 1 4 1 1 0 2 1 1 0 2 1 0 0 25 0 2834.416 P46940 P46940 242 266 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 3.9595E-16 99.93 By MS/MS 1 0 1 1 1943700 0 0 1943700 10415 835 10969 45033 37475 37475 1 0 0 418800 NPNGPYPYTLK DALETLGFLNHYQMKNPNGPYPYTLKLCFS YQMKNPNGPYPYTLKLCFSTAQHAS_____ K N P L K L 0 0 2 0 0 0 0 1 0 0 1 1 0 0 3 0 1 0 2 0 0 0 11 0 1262.6295 P14866 P14866 569 579 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 6.7418E-05 142.43 By matching By MS/MS By MS/MS 4.5 1.63 1 2 3 1 1 2 1 6 3 434030000 14444000 288800000 130780000 10416 565 10970 45034;45035;45036;45037;45038;45039;45040;45041;45042;45043 37476;37477;37478;37479;37480;37481;37482;37483;37484 37478 9 11269000 101970000 24170000 NPNLPPETVDSLK IIQLFHVDFAWILARNPNLPPETVDSLKNI ARNPNLPPETVDSLKNILTSNNIDVKKMTV R N P L K N 0 0 2 1 0 0 1 0 0 0 2 1 0 0 3 1 1 0 0 1 0 0 13 0 1422.7355 P05090 P05090 152 164 APOD Apolipoprotein D yes yes 2 0.0081063 91.701 By MS/MS By matching 7.5 3.77 1 1 2 3 1 18083000 14735000 0 3347900 10417 423 10971 45044;45045;45046;45047 37485;37486;37487 37486 3 13418000 0 7322200 NPPGFAFVEFEDPR AFGYYGPLRSVWVARNPPGFAFVEFEDPRD RNPPGFAFVEFEDPRDAADAVRELDGRTLC R N P P R D 1 1 1 1 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 1 0 0 14 0 1620.7573 Q16629;P84103 P84103 44 57 SRSF7;SRSF3 Serine/arginine-rich splicing factor 7;Serine/arginine-rich splicing factor 3 no no 2;3 0.002687 98.353 By matching By MS/MS By MS/MS 5.62 2.09 1 1 1 1 1 5 4 1 1 3 3 10 288250000 2937200 36746000 248570000 10418 1113;1392 10972 45048;45049;45050;45051;45052;45053;45054;45055;45056;45057;45058;45059;45060;45061;45062;45063 37488;37489;37490;37491;37492;37493;37494;37495;37496;37497;37498 37496 10 4089000 16233000 42714000 NPPGFAFVEFEDPRDAADAVR AFGYYGPLRSVWVARNPPGFAFVEFEDPRD FVEFEDPRDAADAVRELDGRTLCGCRVRVE R N P V R E 4 2 1 3 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2319.092 P84103 P84103 44 64 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2;3 2.8351E-14 125.88 By matching By MS/MS By MS/MS 6.43 0.728 1 2 4 1 2 4 107970000 987140 13811000 93169000 10419 1113 10973 45064;45065;45066;45067;45068;45069;45070 37499;37500;37501;37502;37503 37502 5 790830 7283600 16383000 NPPGFAFVEFEDPRDAEDAVR AFSYYGPLRTVWIARNPPGFAFVEFEDPRD FVEFEDPRDAEDAVRGLDGKVICGSRVRVE R N P V R G 3 2 1 3 0 0 3 1 0 0 0 0 0 3 3 0 0 0 0 2 0 0 21 1 2377.0975 Q16629 Q16629 45 65 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2;3 9.3631E-13 146.37 By MS/MS By MS/MS 4.29 1.91 1 1 1 1 3 1 6 118150000 0 31739000 86408000 10420 1392 10974 45071;45072;45073;45074;45075;45076;45077 37504;37505;37506;37507;37508;37509;37510;37511 37511 8 0 10987000 13647000 NPPNQSSNERPPSLLVIETK RGKIYKPSSRFADQKNPPNQSSNERPPSLL SSNERPPSLLVIETKKPPLKKGEKEKKKSN K N P T K K 0 1 3 0 0 1 2 0 0 1 2 1 0 0 4 3 1 0 0 1 0 0 20 1 2219.1546 O15042 O15042 169 188 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 3 6.6387E-07 99.021 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 35076000 0 9237700 25838000 10421 163 10975 45078;45079;45080;45081 37512;37513;37514 37514 3 0 4210400 5784300 NPPVNAISTTLLR EYTRLHNALALIRLRNPPVNAISTTLLRDI LRNPPVNAISTTLLRDIKEGLQKAVIDHTI R N P L R D 1 1 2 0 0 0 0 0 0 1 2 0 0 0 2 1 2 0 0 1 0 0 13 0 1394.7882 Q08426 Q08426 18 30 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.00098687 114.86 By MS/MS 3 0 1 1 3405900 0 3405900 0 10422 1184 10976 45082 37515 37515 1 0 1452000 0 NPQNSSQSADGLR KPTFSQTIALLNIYRNPQNSSQSADGLRCA YRNPQNSSQSADGLRCAVSDVEMQEHYDEF R N P L R C 1 1 2 1 0 2 0 1 0 0 1 0 0 0 1 3 0 0 0 0 0 0 13 0 1372.6331 P0DN76;Q01081 P0DN76 54 66 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2 1.2971E-07 148.32 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 13081000 0 0 13081000 10423 502 10977 45083;45084;45085 37516;37517;37518 37516 3 0 0 1997200 NPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQK AVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ LTASMLASAPPQEQKQMLGERLFPLIQAMH R N P Q K Q 5 0 2 0 0 10 2 1 2 0 3 1 2 0 6 2 2 0 0 3 0 0 41 0 4456.2016 P11940 P11940 519 559 PABPC1 Polyadenylate-binding protein 1 yes yes 4;5 3.6828E-101 167.05 By MS/MS 3 0.816 2 2 2 6 117230000 0 117230000 0 10424 530 10978;10979 45086;45087;45088;45089;45090;45091 37519;37520;37521;37522 37519 233 4 0 49227000 0 NPQSYLYLVK EGGEEETLRRLGLERNPQSYLYLVKGQCAK LGLERNPQSYLYLVKGQCAKVSSINDKSDW R N P V K G 0 0 1 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 2 1 0 0 10 0 1223.655 O00159 O00159 260 269 MYO1C Unconventional myosin-Ic yes yes 2 0.0037776 100.98 By matching By MS/MS By MS/MS 2 0 3 1 1 1 22082000 1563900 6993000 13526000 10425 106 10980 45092;45093;45094 37523;37524 37524 2 1884300 3149000 3056500 NPSSPLYTTLGVITK ELKATFCLPILGVKKNPSSPLYTTLGVITK NPSSPLYTTLGVITKGTVIEVNVSELGLVT K N P T K G 0 0 1 0 0 0 0 1 0 1 2 1 0 0 2 2 3 0 1 1 0 0 15 0 1589.8665 O95478 O95478 202 216 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 2 0.0075056 78.486 By matching By MS/MS By MS/MS 6 0 3 1 1 1 34349000 3401100 7427200 23521000 10426 329 10981 45095;45096;45097 37525;37526;37527 37525 3 4528600 2571000 3518900 NPSTSLGPTLEPEEVVNR TTCLCPNFVNTGFIKNPSTSLGPTLEPEEV TSLGPTLEPEEVVNRLMHGILTEQKMIFIP K N P N R L 0 1 2 0 0 0 3 1 0 0 2 0 0 0 3 2 2 0 0 2 0 0 18 0 1937.9694 Q8NBQ5 Q8NBQ5 228 245 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 2 3.0701E-08 115.83 By MS/MS 6 0 1 1 5701700 0 0 5701700 10427 1627 10982 45098 37528 37528 1 0 0 853030 NPTIVNFPITNVDLR FCIKRFTKNNFFVEKNPTIVNFPITNVDLR NPTIVNFPITNVDLREYLSEEVQAVHKNTT K N P L R E 0 1 3 1 0 0 0 0 0 2 1 0 0 1 2 0 2 0 0 2 0 0 15 0 1711.9257 Q53GS9 Q53GS9 467 481 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2;3 8.0613E-128 278.93 By matching By MS/MS By MS/MS 3 0 4 1 1 2 81134000 474870 15804000 64855000 10428 1426 10983 45099;45100;45101;45102 37529;37530;37531 37530 3 547900 6737200 12579000 NPVMELNEK DATAEQGPILTKHGKNPVMELNEKRRGLKY LTKHGKNPVMELNEKRRGLKYELISETGGS K N P E K R 0 0 2 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 9 0 1072.5223 Q12906;Q96SI9 Q12906 527 535 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2 2.2036E-07 159.58 By matching By MS/MS By MS/MS 3.12 0.927 2 4 1 1 1 3 4 212450000 4927100 98145000 109380000 10429 1211;1834 10984;10985 45103;45104;45105;45106;45107;45108;45109;45110 37532;37533;37534;37535 37533 571 4 5684800 43349000 20398000 NPVMELNEKR DATAEQGPILTKHGKNPVMELNEKRRGLKY TKHGKNPVMELNEKRRGLKYELISETGGSH K N P K R R 0 1 2 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 0 1 0 0 10 1 1228.6234 Q12906;Q96SI9 Q12906 527 536 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2 0.0008665 135.71 By MS/MS By matching 2.67 0.471 1 2 2 1 296860000 0 7603800 289260000 10430 1211;1834 10986 45111;45112;45113 37536;37537 37536 2 0 3373100 56102000 NPVSDHFPVGCMK VRAADGPQKLLKVIKNPVSDHFPVGCMKVG IKNPVSDHFPVGCMKVGTSFSIPVVSDVRE K N P M K V 0 0 1 1 1 0 0 1 1 0 0 1 1 1 2 1 0 0 0 2 0 0 13 0 1486.6697 Q92979 Q92979 161 173 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 0.015918 82.008 By MS/MS 7 0 1 1 29083000 0 0 29083000 10431 1736 10987 45114 37538 37538 1 0 0 5160600 NPVTIFSLATNEMWR GRVGQDPVLRQVEGKNPVTIFSLATNEMWR NPVTIFSLATNEMWRSGDSEVYQLGDVSQK K N P W R S 1 1 2 0 0 0 1 0 0 1 1 0 1 1 1 1 2 1 0 1 0 0 15 0 1777.8821 Q04837 Q04837 52 66 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2;3 2.2259E-107 261.22 By MS/MS By MS/MS By MS/MS 8.33 0.471 8 4 3 3 6 213480000 594540 11377000 201500000 10432 1161 10988;10989 45115;45116;45117;45118;45119;45120;45121;45122;45123;45124;45125;45126 37539;37540;37541;37542;37543;37544;37545;37546;37547;37548 37543 556 10 510430 5176000 33462000 NPVWYQALTHGLNEEQR EYQIFKAIFQTIQNRNPVWYQALTHGLNEE VWYQALTHGLNEEQRKQLQDIATLADQRRA R N P Q R K 1 1 2 0 0 2 2 1 1 0 2 0 0 0 1 0 1 1 1 1 0 0 17 0 2053.997 O95373 O95373 973 989 IPO7 Importin-7 yes yes 3 1.0763E-05 101.05 By MS/MS 2 0 1 1 6847600 0 0 6847600 10433 322 10990 45127 37549 37549 1 0 0 1547400 NPWVQIMMFK ARKFVFFNIPQIQYKNPWVQIMMFKNMTPS QIQYKNPWVQIMMFKNMTPSPFLRFYLDSG K N P F K N 0 0 1 0 0 1 0 0 0 1 0 1 2 1 1 0 0 1 0 1 0 0 10 0 1292.641 P82663 P82663 59 68 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 2 0.000313 124.08 By MS/MS By MS/MS 7 0 2 1 1 5716600 0 488190 5228400 10434 1097 10991 45128;45129 37550;37551 37551 2 0 280320 927750 NPYTIFHQALK KYHAASAEEQATIERNPYTIFHQALKNCEP TIERNPYTIFHQALKNCEPMIGLVPILKGG R N P L K N 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 0 1 0 1 0 0 0 11 0 1330.7034 Q9Y2R9 Q9Y2R9 140 150 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 2 0.045265 74.941 By matching By MS/MS 7 0 2 1 1 23504000 0 8024100 15480000 10435 2248 10992 45130;45131 37552 37552 1 0 4607500 2746800 NQAAIQGRPPYAASAEEVAK RTFGRGGRYYGRGYKNQAAIQGRPPYAASA QGRPPYAASAEEVAKELKSKSGESKSSAMS K N Q A K E 6 1 1 0 0 2 2 1 0 1 0 1 0 0 2 1 0 0 1 1 0 0 20 1 2070.0494 Q9NZB2 Q9NZB2 1010 1029 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 3 1.7929E-05 81.016 By matching By MS/MS 1.5 0.5 1 1 1 1 14423000 0 2905300 11518000 10436 2101 10993 45132;45133 37553 37553 1 0 1420100 2602700 NQAFIEMNTEEAANTMVNYYTSVTPVLR LPFGKVTNLLMLKGKNQAFIEMNTEEAANT NTMVNYYTSVTPVLRGQPIYIQFSNHKELK K N Q L R G 3 1 4 0 0 1 3 0 0 1 1 0 2 1 1 1 4 0 2 3 0 0 28 0 3205.506 P26599 P26599 95 122 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 3 1.7369E-44 174.3 By MS/MS By MS/MS 4 0 2 1 1 25010000 0 2342100 22668000 10437 671 10994 45134;45135 37554;37555 37555 2 0 777260 3702400 NQALNTDNYGHDLASVQALQR FHRDADETKEWIEEKNQALNTDNYGHDLAS DNYGHDLASVQALQRKHEGFERDLAALGDK K N Q Q R K 3 1 3 2 0 3 0 1 1 0 3 0 0 0 0 1 1 0 1 1 0 0 21 0 2327.1254 Q13813 Q13813 1253 1273 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 0 415.56 By MS/MS By MS/MS 1.6 0.8 3 1 1 2 3 136740000 0 70152000 66587000 10438 1268 10995 45136;45137;45138;45139;45140 37556;37557;37558;37559 37559 4 0 34021000 14291000 NQDATDDTELQNMNEYLSSFK VIHYDDAAISKLLDRNQDATDDTELQNMNE DTELQNMNEYLSSFKVAQYVVREEDGVEEV R N Q F K V 1 0 3 3 0 2 2 0 0 0 2 1 1 1 0 2 2 0 1 0 0 0 21 0 2462.0544 Q8TDI0 Q8TDI0 1269 1289 CHD5 Chromodomain-helicase-DNA-binding protein 5 yes yes 2 0.00043135 61.212 By MS/MS 1 0 1 1 0 0 0 0 10439 1662 10996 45141 37560 37560 654 1 0 0 0 NQDEESQEAPELLK TKEALTRKQQKCRRKNQDEESQEAPELLKR KNQDEESQEAPELLKRPKEYTVRFTFPDPP K N Q L K R 1 0 1 1 0 2 4 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 14 0 1628.753 Q8NE71 Q8NE71 590 603 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 3.1959E-17 189.57 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 35834000 0 6855700 28978000 10440 1638 10997 45142;45143;45144 37561;37562 37562 2 0 3087200 6490700 NQDLAPNSAEQASILSLVTK PAPDETSFSEALLKRNQDLAPNSAEQASIL PNSAEQASILSLVTKINNVIDNLIVAPGTF R N Q T K I 3 0 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 20 0 2098.0906 Q12905 Q12905 61 80 ILF2 Interleukin enhancer-binding factor 2 yes yes 2;3 2.1955E-21 174.62 By MS/MS By MS/MS By MS/MS 5.2 1.72 1 1 1 2 6 4 4 1 2 11 7 529910000 11917000 299320000 218670000 10441 1210 10998 45145;45146;45147;45148;45149;45150;45151;45152;45153;45154;45155;45156;45157;45158;45159;45160;45161;45162;45163;45164 37563;37564;37565;37566;37567;37568;37569;37570;37571;37572;37573;37574;37575;37576;37577;37578;37579;37580;37581;37582 37568 19 9547200 82588000 31753000 NQEQLAAELAEFTAK EAKSAIAKQAADQMKNQEQLAAELAEFTAK NQEQLAAELAEFTAKIALLEEAKKKKEEEA K N Q A K I 4 0 1 0 0 2 3 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 15 0 1661.8261 P35241 P35241 413 427 RDX Radixin yes yes 2 3.5102E-07 163.99 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 16144000 0 2215300 13928000 10442 742 10999 45165;45166;45167 37583;37584 37584 2 0 944370 2568600 NQFETEINITK SKVRNNYDEEIISLKNQFETEINITKTTIH ISLKNQFETEINITKTTIHQLTMQKEEDTS K N Q T K T 0 0 2 0 0 1 2 0 0 2 0 1 0 1 0 0 2 0 0 0 0 0 11 0 1335.667 P15924 P15924 1364 1374 DSP Desmoplakin yes yes 2 0.014478 87.298 By MS/MS 1 0 1 1 17220000 0 17220000 0 10443 572 11000 45168 37585 37585 1 0 8416700 0 NQGGSSWEAPYSR FESSYRNSLDSFGGRNQGGSSWEAPYSRSK GRNQGGSSWEAPYSRSKLRPGFMEDRGREN R N Q S R S 1 1 1 0 0 1 1 2 0 0 0 0 0 0 1 3 0 1 1 0 0 0 13 0 1437.6273 Q5BKZ1 Q5BKZ1 126 138 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.00016703 150.15 By MS/MS By MS/MS By MS/MS 3 0 3 1 1 1 35929000 4274700 12211000 19443000 10444 1434 11001 45169;45170;45171 37586;37587;37588 37588 3 4932000 5205600 3771000 NQGGYGGSSSSSSYGSGR SGPYGGGGQYFAKPRNQGGYGGSSSSSSYG GYGGSSSSSSYGSGRRF_____________ R N Q G R R 0 1 1 0 0 1 0 6 0 0 0 0 0 0 0 7 0 0 2 0 0 0 18 0 1693.6928 P09651 P09651 353 370 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 2 2.3795E-30 197.38 By MS/MS By MS/MS By MS/MS 4.91 1.62 1 2 1 2 3 2 2 5 4 177680000 11145000 116000000 50537000 10445 490 11002 45172;45173;45174;45175;45176;45177;45178;45179;45180;45181;45182 37589;37590;37591;37592;37593;37594;37595;37596;37597;37598;37599;37600;37601 37596 13 15397000 40188000 7557700 NQGGYGGSSSSSSYGSGRR SGPYGGGGQYFAKPRNQGGYGGSSSSSSYG YGGSSSSSSYGSGRRF______________ R N Q R R F 0 2 1 0 0 1 0 6 0 0 0 0 0 0 0 7 0 0 2 0 0 0 19 1 1849.7939 P09651 P09651 353 371 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 3 0.0018009 61.815 By MS/MS 6 0 1 1 2705600 0 2705600 0 10446 490 11003 45183 37602 37602 1 0 936600 0 NQGLTVFETGQK QVSAKYIGSVEEAEKNQGLTVFETGQKKTE AEKNQGLTVFETGQKKTEKRKKFKENDASN K N Q Q K K 0 0 1 0 0 2 1 2 0 0 1 1 0 1 0 0 2 0 0 1 0 0 12 0 1320.6674 O60508 O60508 162 173 CDC40 Pre-mRNA-processing factor 17 yes yes 2 0.011131 92.538 By matching By MS/MS By MS/MS 3 0 3 1 1 1 11305000 2841500 3853100 4610700 10447 228 11004 45184;45185;45186 37603;37604 37603 2 3278400 1642600 894260 NQGNTWLTAFVLK HYDGSYSTFGERYGRNQGNTWLTAFVLKTF GRNQGNTWLTAFVLKTFAQARAYIFIDEAH R N Q L K T 1 0 2 0 0 1 0 1 0 0 2 1 0 1 0 0 2 1 0 1 0 0 13 0 1490.7882 P01023 P01023 1035 1047 A2M Alpha-2-macroglobulin no no 2 0.0028837 106.29 By MS/MS 9.5 0.5 1 1 2 5672600 5672600 0 0 10448 370 11005 45187;45188 37605 37605 1 4360600 0 0 NQHLVSQQKDPDTEEYRK EKKLLEEDVKRWKARNQHLVSQQKDPDTEE LVSQQKDPDTEEYRKLLSEKEVHTKRIQQL R N Q R K L 0 1 1 2 0 3 2 0 1 0 1 2 0 0 1 1 1 0 1 1 0 0 18 2 2214.0665 P12270 P12270 1339 1356 TPR Nucleoprotein TPR yes yes 4 0.0116 51.495 By MS/MS 1 0 1 1 2315000 0 0 2315000 10449 536 11006 45189 37606 37606 1 0 0 498800 NQIALWDQLLEGR SVKVSEEVEKGRAVKNQIALWDQLLEGRIK VKNQIALWDQLLEGRIKLQKALLTTNQLPQ K N Q G R I 1 1 1 1 0 2 1 1 0 1 3 0 0 0 0 0 0 1 0 0 0 0 13 0 1554.8154 Q9NY61 Q9NY61 229 241 AATF Protein AATF yes yes 2 6.0324E-45 222.3 By matching By MS/MS By MS/MS 3 0 3 1 1 1 13273000 274340 748040 12251000 10450 2094 11007 45190;45191;45192 37607;37608 37608 2 316530 318890 2376000 NQILNLTTDNANILLQIDNAR PRDYSKYYKTIDDLKNQILNLTTDNANILL TTDNANILLQIDNARLAADDFRLKYENEVA K N Q A R L 2 1 5 2 0 2 0 0 0 3 4 0 0 0 0 0 2 0 0 0 0 0 21 0 2366.2554 P13645;CON__P13645 P13645 208 228 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.2883E-268 333.11 By MS/MS By MS/MS By MS/MS 3.95 2.59 4 3 3 4 4 2 1 8 2 11 319420000 39005000 5422600 274990000 + 10451 56 11008 45193;45194;45195;45196;45197;45198;45199;45200;45201;45202;45203;45204;45205;45206;45207;45208;45209;45210;45211;45212;45213 37609;37610;37611;37612;37613;37614;37615;37616;37617;37618;37619;37620;37621;37622;37623;37624;37625;37626;37627;37628;37629;37630;37631 37613 23 30316000 2650500 53918000 NQLKEDQDKVHMWEQTVK ENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ KEDQDKVHMWEQTVKKDENEIEKLKKEEQR K N Q V K K 0 0 1 2 0 3 2 0 1 0 1 3 1 0 0 0 1 1 0 2 0 0 18 2 2255.1005 Q14683 Q14683 826 843 SMC1A Structural maintenance of chromosomes protein 1A yes yes 3;4 5.0877E-09 125.28 By MS/MS 1.5 0.5 2 2 4 104160000 0 0 104160000 10452 1312 11009 45214;45215;45216;45217 37632;37633;37634;37635 37635 4 0 0 23047000 NQLNPIGSLQELAIHHGWR AVPDPLMPDPSKQPKNQLNPIGSLQELAIH PIGSLQELAIHHGWRLPEYTLSQEGGPAHK K N Q W R L 1 1 2 0 0 2 1 2 2 2 3 0 0 0 1 1 0 1 0 0 0 0 19 0 2182.1396 O75569 O75569 123 141 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 4 1.0562E-05 98.796 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 33425000 0 12727000 20698000 10453 273 11010 45218;45219;45220 37636;37637 37636 2 0 4405600 3293300 NQLTAMSSVLAK PIGPHLQSMPSEQIRNQLTAMSSVLAKALE QIRNQLTAMSSVLAKALEVIKPAHILQEKE R N Q A K A 2 0 1 0 0 1 0 0 0 0 2 1 1 0 0 2 1 0 0 1 0 0 12 0 1261.67 Q14152 Q14152 521 532 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.0092144 95.573 By MS/MS 2 0 1 1 4590600 0 4590600 0 10454 1286 11011 45221 37638 37638 1 0 2067200 0 NQLTSNPENTVFDAK AFTPEGERLIGDAAKNQLTSNPENTVFDAK NQLTSNPENTVFDAKRLIGRTWNDPSVQQD K N Q A K R 1 0 3 1 0 1 1 0 0 0 1 1 0 1 1 1 2 0 0 1 0 0 15 0 1676.8006 P11021 P11021 82 96 HSPA5 78 kDa glucose-regulated protein yes yes 2 6.4391E-25 197.3 By MS/MS By MS/MS By MS/MS 3 0 3 1 1 1 78088000 6927700 20633000 50527000 10455 516 11012 45222;45223;45224 37639;37640;37641 37640 3 7993000 8795700 9799900 NQLVTPEPTSR SIVPIAPELQPSTSRNQLVTPEPTSRATRC STSRNQLVTPEPTSRATRCRTNRSSVKTPE R N Q S R A 0 1 1 0 0 1 1 0 0 0 1 0 0 0 2 1 2 0 0 1 0 0 11 0 1240.6412 Q14676 Q14676 1585 1595 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.00054028 119.07 By MS/MS By MS/MS 1 0 2 1 1 11383000 0 3688000 7694700 10456 1310 11013 45225;45226 37642;37643 37643 2 0 1802600 1657900 NQNSWGTGEDVK NAGVTASPPTDLIWKNQNSWGTGEDVKVIL IWKNQNSWGTGEDVKVILKNSQGEEVAQRS K N Q V K V 0 0 2 1 0 1 1 2 0 0 0 1 0 0 0 1 1 1 0 1 0 0 12 0 1333.5899 P20700 P20700 517 528 LMNB1 Lamin-B1 yes yes 2 6.6569E-05 142.83 By MS/MS By MS/MS By MS/MS 2.38 0.992 2 2 3 1 1 3 4 524700000 9886600 125670000 389150000 10457 619 11014 45227;45228;45229;45230;45231;45232;45233;45234 37644;37645;37646;37647;37648;37649;37650 37649 7 11407000 53853000 75624000 NQPVMLDVTEELRPDHLVLACTR RTRCRPCECGGKHIRNQPVMLDVTEELRPD TEELRPDHLVLACTRAEFGSSDEDTD____ R N Q T R A 1 2 1 2 1 1 2 0 1 0 4 0 1 0 2 0 2 0 0 3 0 0 23 1 2705.3629 P03243;P03244 P03243 463 485 yes no 3;4 1.0337E-21 155.76 By matching By MS/MS 2.9 1.58 3 2 3 2 1 9 178830000 0 2113200 176720000 10458 406 11015;11016 45235;45236;45237;45238;45239;45240;45241;45242;45243;45244 37651;37652;37653;37654;37655;37656;37657;37658;37659;37660;37661 37654 133 11 0 701310 35302000 NQQPVLPAGLQVPK ERVGILLDEASGVNKNQQPVLPAGLQVPKT KNQQPVLPAGLQVPKTVVSSWNRKAAEYGK K N Q P K T 1 0 1 0 0 3 0 1 0 0 2 1 0 0 3 0 0 0 0 2 0 0 14 0 1487.846 Q01780 Q01780 137 150 EXOSC10 Exosome component 10 yes yes 2 0.069403 60.518 By MS/MS By matching 2.5 0.5 1 1 1 1 8310100 0 5914500 2395600 10459 1138 11017 45245;45246 37662 37662 1 0 2663400 464630 NQSETLNWLSNAIK AEQVVSMAFSQKNPKNQSETLNWLSNAIKE KNQSETLNWLSNAIKEFGFSGLNVKAFISN K N Q I K E 1 0 3 0 0 1 1 0 0 1 2 1 0 0 0 2 1 1 0 0 0 0 14 0 1616.8158 Q14008 Q14008 731 744 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0006331 142.71 By MS/MS 1 0 1 1 45318000 0 0 45318000 10460 1279 11018 45247 37663 37663 1 0 0 9764600 NQSFCPTVNLDK GYFGKVGMKHYHLKRNQSFCPTVNLDKLWT LKRNQSFCPTVNLDKLWTLVSEQTRVNAAK R N Q D K L 0 0 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 0 1 0 0 12 0 1421.6609 P46776 P46776 66 77 RPL27A 60S ribosomal protein L27a yes yes 2 4.0932E-05 148.32 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 60123000 0 2687800 57436000 10461 827 11019 45248;45249;45250 37664;37665;37666 37665 3 0 1543300 9949800 NQTAEKEEFEHQQK KILDKCNEIINWLDKNQTAEKEEFEHQQKE KNQTAEKEEFEHQQKELEKVCNPIITKLYQ K N Q Q K E 1 0 1 0 0 3 4 0 1 0 0 2 0 1 0 0 1 0 0 0 0 0 14 1 1744.8016 P11142 P11142 584 597 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3;4 7.7391E-08 174.4 By MS/MS By MS/MS 4.36 1.59 1 5 2 2 2 2 2 12 282170000 0 25130000 257050000 10462 517 11020 45251;45252;45253;45254;45255;45256;45257;45258;45259;45260;45261;45262;45263;45264 37667;37668;37669;37670;37671;37672 37669 6 0 10713000 49459000 NQVALNPQNTVFDAK VAFTDTERLIGDAAKNQVALNPQNTVFDAK NQVALNPQNTVFDAKRLIGRKFGDPVVQSD K N Q A K R 2 0 3 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 15 0 1657.8424 P0DMV9;P0DMV8 P0DMV9 57 71 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 6.5948E-25 197.07 By MS/MS By MS/MS By matching 6.67 2.78 1 2 1 1 2 1 1 3 2 7 3 357370000 32042000 286800000 38524000 10463 501 11021 45265;45266;45267;45268;45269;45270;45271;45272;45273;45274;45275;45276 37673;37674;37675;37676;37677;37678;37679;37680;37681 37673 9 37514000 149080000 44558000 NQVALNPQNTVFDAKR VAFTDTERLIGDAAKNQVALNPQNTVFDAK QVALNPQNTVFDAKRLIGRKFGDPVVQSDM K N Q K R L 2 1 3 1 0 2 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 16 1 1813.9435 P0DMV9;P0DMV8 P0DMV9 57 72 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2;3 6.0734E-06 138.45 By MS/MS 5 2.92 2 1 1 4 47380000 0 47380000 0 10464 501 11022 45277;45278;45279;45280 37682;37683;37684 37682 3 0 36496000 0 NQVAMNPTNTIFDAK VAFTDTERLIGDAAKNQVAMNPTNTIFDAK NQVAMNPTNTIFDAKRLIGRKFEDATVQSD K N Q A K R 2 0 3 1 0 1 0 0 0 1 0 1 1 1 1 0 2 0 0 1 0 0 15 0 1662.8036 P54652 P54652 58 72 HSPA2 Heat shock-related 70 kDa protein 2 yes yes 2 0.028346 65.719 By matching By MS/MS 2.5 0.5 1 1 1 1 42667000 2954400 0 39713000 10465 930 11023 45281;45282 37685 37685 1 3559600 0 7702400 NQVAMNPTNTVFDAK VAFTDTERLIGDAAKNQVAMNPTNTVFDAK NQVAMNPTNTVFDAKRLIGRRFDDAVVQSD K N Q A K R 2 0 3 1 0 1 0 0 0 0 0 1 1 1 1 0 2 0 0 2 0 0 15 0 1648.7879 P11142 P11142 57 71 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 7.9741E-25 196.24 By MS/MS By MS/MS By MS/MS 5.33 3.01 2 3 4 2 2 3 2 2 4 1 13 10 843040000 26063000 381940000 435040000 10466 517 11024;11025 45283;45284;45285;45286;45287;45288;45289;45290;45291;45292;45293;45294;45295;45296;45297;45298;45299;45300;45301;45302;45303;45304;45305;45306 37686;37687;37688;37689;37690;37691;37692;37693;37694;37695;37696;37697;37698;37699;37700;37701;37702;37703;37704;37705;37706;37707 37705 219 22 30071000 175990000 99527000 NQVAMNPTNTVFDAKR VAFTDTERLIGDAAKNQVAMNPTNTVFDAK QVAMNPTNTVFDAKRLIGRRFDDAVVQSDM K N Q K R L 2 1 3 1 0 1 0 0 0 0 0 1 1 1 1 0 2 0 0 2 0 0 16 1 1804.889 P11142 P11142 57 72 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 2.7071E-21 154.6 By MS/MS 3 0 2 2 53959000 0 53959000 0 10467 517 11026 45307;45308 37708;37709 37709 2 0 23003000 0 NQVLVFVHSR MNEIVYEKIMEHAGKNQVLVFVHSRKETGK EHAGKNQVLVFVHSRKETGKTARAIRDMCL K N Q S R K 0 1 1 0 0 1 0 0 1 0 1 0 0 1 0 1 0 0 0 3 0 0 10 0 1197.6618 O75643 O75643 719 728 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 8.4369E-05 147.51 By matching By MS/MS 1.25 0.433 3 1 1 3 112590000 0 9806100 102790000 10468 277 11027 45309;45310;45311;45312 37710;37711;37712 37711 3 0 4793100 22211000 NQYREDWK YETARRLKKCVDKIRNQYREDWKSKEMKVR KCVDKIRNQYREDWKSKEMKVRQRAVALYF R N Q W K S 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 8 1 1137.5203 P11387 P11387 459 466 TOP1 DNA topoisomerase 1 yes yes 2 1.3741E-12 176.09 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 10770000 0 4259300 6510900 10469 523 11028 45313;45314 37713;37714 37714 2 0 1918000 1262800 NREEEWDPEYTPK SGNNNNNSNNDFQKRNREEEWDPEYTPKSK KRNREEEWDPEYTPKSKKYYLHDDREGEGS R N R P K S 0 1 1 1 0 0 4 0 0 0 0 1 0 0 2 0 1 1 1 0 0 0 13 1 1691.7427 Q9Y2W1 Q9Y2W1 864 876 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 1.6179E-16 192.5 By MS/MS 1.5 0.5 2 2 4 71615000 0 0 71615000 10470 2252 11029 45315;45316;45317;45318 37715;37716 37716 2 0 0 15908000 NREELGFRPEYSASQLK LGMIDRWYHPGCFVKNREELGFRPEYSASQ EELGFRPEYSASQLKGFSLLATEDKEALKK K N R L K G 1 2 1 0 0 1 3 1 0 0 2 1 0 1 1 2 0 0 1 0 0 0 17 2 2023.0123 P09874 P09874 166 182 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 8.101E-150 284.51 By MS/MS By MS/MS 2.84 1.46 4 5 4 3 2 1 5 14 1441400000 0 279130000 1162300000 10471 492 11030 45319;45320;45321;45322;45323;45324;45325;45326;45327;45328;45329;45330;45331;45332;45333;45334;45335;45336;45337 37717;37718;37719;37720;37721;37722;37723;37724;37725;37726;37727;37728;37729;37730 37724 14 0 123880000 251670000 NREPVQLETLSIR VSMNTHLKAVKMTLKNREPVQLETLSIRGN LKNREPVQLETLSIRGNNIRYFILPDSLPL K N R I R G 0 2 1 0 0 1 2 0 0 1 2 0 0 0 1 1 1 0 0 1 0 0 13 1 1553.8526 P62314 P62314 49 61 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 2;3 1.8687E-88 259.23 By MS/MS By MS/MS 8.38 1 3 4 4 2 6 7 573940000 0 66288000 507650000 10472 1022 11031 45338;45339;45340;45341;45342;45343;45344;45345;45346;45347;45348;45349;45350 37731;37732;37733;37734;37735;37736;37737;37738;37739;37740;37741;37742 37739 12 0 43828000 125250000 NRGPPPSWGR CRVRVELSNGEKRSRNRGPPPSWGRRPRDD EKRSRNRGPPPSWGRRPRDDYRRRSPPPRR R N R G R R 0 2 1 0 0 0 0 2 0 0 0 0 0 0 3 1 0 1 0 0 0 0 10 1 1122.5683 P84103 P84103 89 98 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 0.00083197 145.9 By MS/MS By MS/MS 7 0 2 1 1 10908000 0 6366000 4542000 10473 1113 11032 45351;45352 37743;37744;37745 37744 3 0 3655400 805950 NRKPSDSVHITNDDER KKEKNKEAIYSGYIRNRKPSDSVHITNDDE RKPSDSVHITNDDERFLHHLIIEEKEKDSF R N R E R F 0 2 2 3 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 1 0 0 16 2 1881.8929 A6NHR9 A6NHR9 289 304 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 4 0.0012981 80.102 By MS/MS 1 0 1 1 2524800 0 0 2524800 10474 15 11033 45353 37746 37746 1 0 0 544010 NRNELAETLALLK EQDDQDGSSWKCIVRNRNELAETLALLKAQ VRNRNELAETLALLKAQIDPVLLKNSSQQD R N R L K A 2 1 2 0 0 0 2 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 13 1 1483.8358 Q96T23 Q96T23 194 206 RSF1 Remodeling and spacing factor 1 yes yes 2;3 5.8348E-05 163.12 By matching By MS/MS 1.86 0.833 3 2 2 1 6 33774000 0 1089900 32684000 10475 1837 11034 45354;45355;45356;45357;45358;45359;45360 37747;37748;37749 37747 3 0 532740 6975000 NRPLSDEELDAMFPEGYK EQLQAWRWEREIDERNRPLSDEELDAMFPE LSDEELDAMFPEGYKVLPPPAGYVPIRTPA R N R Y K V 1 1 1 2 0 0 3 1 0 0 2 1 1 1 2 1 0 0 1 0 0 0 18 1 2109.9677 O75533 O75533 396 413 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 1.3322E-22 195.1 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 63343000 0 6530400 56812000 10476 270 11035 45361;45362;45363;45364;45365;45366 37750;37751;37752;37753 37753 4 0 2940700 12310000 NRPPFGQGYTQPGPGYR STMTPPPSGPNPYARNRPPFGQGYTQPGPG PPFGQGYTQPGPGYR_______________ R N R Y R - 0 2 1 0 0 2 0 4 0 0 0 0 0 1 4 0 1 0 2 0 0 0 17 1 1890.9125 Q92734 Q92734 384 400 TFG Protein TFG yes yes 3 1.3534E-05 101.01 By MS/MS 3.5 0.5 1 1 2 17953000 0 17953000 0 10477 1718 11036 45367;45368 37754 37754 1 0 6064300 0 NRPPLPAGTNSK KDVYVQLYLQHLTARNRPPLPAGTNSKGPP TARNRPPLPAGTNSKGPPDFSSDEEREPTP R N R S K G 1 1 2 0 0 0 0 1 0 0 1 1 0 0 3 1 1 0 0 0 0 0 12 1 1250.6731 P42166;P42167 P42166 49 60 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 5.689E-07 164.97 By matching By MS/MS 3.4 0.49 3 2 1 4 20140000 0 363930 19776000 10478 798;799 11037 45369;45370;45371;45372;45373 37755;37756;37757;37758;37759 37755 5 0 155150 3577600 NRPTSISWDGLDSGK AVDELGKVLTPTQVKNRPTSISWDGLDSGK NRPTSISWDGLDSGKLYTLVLTDPDAPSRK K N R G K L 0 1 1 2 0 0 0 2 0 1 1 1 0 0 1 3 1 1 0 0 0 0 15 1 1631.7903 P30086 P30086 48 62 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2;3 4.9206E-72 239.87 By matching By MS/MS 7 0 4 2 2 14359000 0 2021300 12338000 10479 710 11038 45374;45375;45376;45377 37760;37761 37760 2 0 1160600 2189300 NSAADLEHPEPSLPLSR ELKMEAEKITRTASKNSAADLEHPEPSLPL AADLEHPEPSLPLSRTRRRNVRSVYATMGD K N S S R T 2 1 1 1 0 0 2 0 1 0 3 0 0 0 3 3 0 0 0 0 0 0 17 0 1831.9064 Q96T58 Q96T58 1882 1898 SPEN Msx2-interacting protein yes yes 2 2.1008E-13 178.58 By MS/MS 1 0 1 1 3369000 0 0 3369000 10480 1839 11039 45378 37762 37762 1 0 0 725890 NSAFESLYQDK TELLDLQPLPVSALRNSAFESLYQDKFPFF SALRNSAFESLYQDKFPFFNPIQTQVFNTV R N S D K F 1 0 1 1 0 1 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 11 0 1300.5935 O75643 O75643 1314 1324 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0037361 104.52 By MS/MS 1 0 1 1 9364000 0 9364000 0 10481 277 11040 45379 37763 37763 1 0 4577000 0 NSDADFQNNEK LKLLVEKKFLALQSKNSDADFQNNEKFVQF LQSKNSDADFQNNEKFVQFKQQLKELKKQC K N S E K F 1 0 3 2 0 1 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 11 0 1280.5269 Q96MF7 Q96MF7 115 125 NSMCE2 E3 SUMO-protein ligase NSE2 yes yes 2 0.017634 85.533 By MS/MS 6 0 1 1 782320 0 0 782320 10482 1810 11041 45380 37764 37764 1 0 0 117040 NSDEADLVPAK ATDSSGELMFLMKWKNSDEADLVPAKEANV MKWKNSDEADLVPAKEANVKCPQVVISFYE K N S A K E 2 0 1 2 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 11 0 1157.5564 P83916 P83916 140 150 CBX1 Chromobox protein homolog 1 yes yes 2 0.00067388 117.7 By MS/MS 7.5 1.12 1 1 1 1 4 248710000 0 0 248710000 10483 1109 11042 45381;45382;45383;45384 37765;37766;37767 37766 3 0 0 43793000 NSDLLTSPDVGLLK LADPVGSLKPHLRAKNSDLLTSPDVGLLKL KNSDLLTSPDVGLLKLASPELERLIIQSSN K N S L K L 0 0 1 2 0 0 0 1 0 0 4 1 0 0 1 2 1 0 0 1 0 0 14 0 1470.793 P05412 P05412 57 70 JUN Transcription factor AP-1 yes yes 2 0.045445 65.395 By MS/MS By matching 6 0 2 1 1 9264200 0 4895200 4369000 10484 433 11043 45385;45386 37768 37768 1 0 1694600 653640 NSEGWEQNGLYEFFR AVEAFYSPPSHDRPRNSEGWEQNGLYEFFR NSEGWEQNGLYEFFRAKMRARRRKGQEKRN R N S F R A 0 1 2 0 0 1 3 2 0 0 1 0 0 2 0 1 0 1 1 0 0 0 15 0 1874.8224 Q8IWX8 Q8IWX8 704 718 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 2 1.0774E-25 205.07 By MS/MS 2 0 1 1 3722100 0 0 3722100 10485 1577 11044 45387 37769 37769 1 0 0 841120 NSFAYQPLLDLVVQLAR QNEIVQSLKTHLQVKNSFAYQPLLDLVVQL FAYQPLLDLVVQLARDLQMDFYPHFPEFFL K N S A R D 2 1 1 1 0 2 0 0 0 0 4 0 0 1 1 1 0 0 1 2 0 0 17 0 1946.0625 O75691 O75691 100 116 UTP20 Small subunit processome component 20 homolog yes yes 2;3 0.030358 51.218 By MS/MS 1.5 0.5 2 2 4 1150500 0 0 1150500 10486 280 11045 45388;45389;45390;45391 37770;37771 37770 2 0 0 251840 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMK KALQHMTDFAIQFNKNSFGVIPSTPLAIHT IDVSLPLNTLGPVMKMEPLNNLQVAVKNNI K N S M K M 1 0 3 1 0 1 0 2 1 3 5 1 2 1 6 4 3 0 0 3 0 0 37 0 3898.0737 P63010 P63010 760 796 AP2B1 AP-2 complex subunit beta yes yes 4 1.8549E-06 46.033 By MS/MS 2 0 1 1 3863600 0 0 3863600 10487 1057 11046 45392 37772 37772 1 0 0 873100 NSGLVSITSR LGAGACGGVPIIFSRNSGLVSITSRENVSI IIFSRNSGLVSITSRENVSILAEDLEGSLA R N S S R E 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 3 1 0 0 1 0 0 10 0 1032.5564 Q8WUM0 Q8WUM0 467 476 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.0058256 96.143 By MS/MS 1.5 0.5 1 1 2 7187600 0 0 7187600 10488 1675 11047 45393;45394 37773 37773 1 0 0 1609700 NSGPLGTEMNTGFSSEVK SPLRENSFGSPLEFRNSGPLGTEMNTGFSS PLGTEMNTGFSSEVKEDLNGPFLNQLETDP R N S V K E 0 0 2 0 0 0 2 3 0 0 1 1 1 1 1 3 2 0 0 1 0 0 18 0 1853.8465 Q9UQ35 Q9UQ35 1335 1352 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 1.4791E-08 128.76 By MS/MS 1 0 1 1 4407100 0 4407100 0 10489 2219 11048 45395 37774 37774 1 0 2154100 0 NSILAQVLDQSAR DAAQQEAKHREAEMRNSILAQVLDQSARAR MRNSILAQVLDQSARARLSNLALVKPEKTK R N S A R A 2 1 1 1 0 2 0 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 13 0 1413.7576 O14737 O14737 41 53 PDCD5 Programmed cell death protein 5 yes yes 2 0.0012287 111.86 By MS/MS 9 0 1 1 2449300 2449300 0 0 10490 143 11049 45396 37775 37775 1 1374800 0 0 NSINQVVQLR KSMESVMVKYDATVRNSINQVVQLRYGEDG DATVRNSINQVVQLRYGEDGLAGESVEFQN R N S L R Y 0 1 2 0 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1169.6517 P24928 P24928 881 890 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.070551 61.679 By MS/MS By matching 1.5 0.5 1 1 1 1 3250500 1927900 0 1322600 10491 653 11050 45397;45398 37776 37776 0 1927900 0 298870 NSIPEPIDPLFK YWKKVLPLLKIIKKKNSIPEPIDPLFKHFH KKKNSIPEPIDPLFKHFHSVDIQASEIVEY K N S F K H 0 0 1 1 0 0 1 0 0 2 1 1 0 1 3 1 0 0 0 0 0 0 12 0 1368.7289 A6NKT7;Q7Z3J3;O14715;P0DJD0;P0DJD1;Q99666;P49792 P49792 620 631 RGPD3;RGPD4;RGPD8;RGPD1;RGPD2;RGPD5;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 5/6;E3 SUMO-protein ligase RanBP2 no no 2 0.043465 74.841 By matching By MS/MS 1.5 0.5 1 1 1 1 15072000 0 2526800 12545000 10492 871;17 11051 45399;45400 37777 37777 1 0 1235100 2834900 NSKIEISELNR EELQITAGRHGDSVRNSKIEISELNRVIQR DSVRNSKIEISELNRVIQRLRSEIDNVKKQ R N S N R V 0 1 2 0 0 0 2 0 0 2 1 1 0 0 0 2 0 0 0 0 0 0 11 1 1301.6939 P04264;CON__P04264 P04264 393 403 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0.0013305 138.22 By MS/MS 6.42 2.6 1 1 1 1 1 2 2 2 1 12 128210000 128210000 0 0 + 10493 413 11052 45401;45402;45403;45404;45405;45406;45407;45408;45409;45410;45411;45412 37778;37779;37780;37781 37780 4 115160000 0 0 NSLDSFGGR RFGGSYGGRFESSYRNSLDSFGGRNQGGSS FESSYRNSLDSFGGRNQGGSSWEAPYSRSK R N S G R N 0 1 1 1 0 0 0 2 0 0 1 0 0 1 0 2 0 0 0 0 0 0 9 0 951.44101 Q5BKZ1 Q5BKZ1 117 125 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 0.00026225 139.97 By matching By MS/MS By MS/MS 3 0 3 1 1 1 17878000 2703900 5518900 9654900 10494 1434 11053 45413;45414;45415 37782;37783 37782 2 3119600 2352700 1872600 NSLESYAFNMK YKAEDEKQRDKVSSKNSLESYAFNMKATVE VSSKNSLESYAFNMKATVEDEKLQGKINDE K N S M K A 1 0 2 0 0 0 1 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 11 0 1302.5914 P11142 P11142 540 550 HSPA8 Heat shock cognate 71 kDa protein yes yes 2 9.423E-21 195.79 By MS/MS By MS/MS By MS/MS 3.71 2.05 2 2 7 1 2 1 1 1 2 8 7 606230000 26512000 314390000 265320000 10495 517 11054;11055 45416;45417;45418;45419;45420;45421;45422;45423;45424;45425;45426;45427;45428;45429;45430;45431;45432 37784;37785;37786;37787;37788;37789;37790;37791;37792;37793;37794;37795;37796;37797;37798 37786 220 15 30589000 135390000 51312000 NSLISSLEEEVSILNR WKAQVARGRQEAERKNSLISSLEEEVSILN SLISSLEEEVSILNRQVLEKEGESKELKRL K N S N R Q 0 1 2 0 0 0 3 0 0 2 3 0 0 0 0 4 0 0 0 1 0 0 16 0 1801.9422 Q14980 Q14980 1224 1239 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 2.2865E-59 228.12 By MS/MS By MS/MS 1 0 4 2 2 13774000 0 744720 13029000 10496 1327 11056 45433;45434;45435;45436 37799;37800;37801;37802 37802 4 0 364010 2807300 NSLLAGGDDDTMSVISGISSR SLRREDVWLPLMSYRNSLLAGGDDDTMSVI GDDDTMSVISGISSRGSTVRSKKSKPSTGK R N S S R G 1 1 1 3 0 0 0 3 0 2 2 0 1 0 0 5 1 0 0 1 0 0 21 0 2093.9899 Q8N3U4 Q8N3U4 1046 1066 STAG2 Cohesin subunit SA-2 yes yes 2 2.3067E-102 253.06 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 23208000 0 3518800 19689000 10497 1603 11057 45437;45438;45439;45440 37803;37804;37805 37805 3 0 1584600 4337000 NSLPDTVQIR LVPNNTTDQELQHIRNSLPDTVQIRRVEER LQHIRNSLPDTVQIRRVEERLSALGNVTTC R N S I R R 0 1 1 1 0 1 0 0 0 1 1 0 0 0 1 1 1 0 0 1 0 0 10 0 1141.6091 P56537 P56537 86 95 EIF6 Eukaryotic translation initiation factor 6 yes yes 2 8.1537E-14 145.16 By matching By MS/MS By MS/MS 6.5 0.5 2 2 1 1 2 207150000 105330000 0 101820000 10498 951 11058 45441;45442;45443;45444 37806;37807;37808 37806 3 140240000 0 17862000 NSLQEQQEEEEEAR KLNLSSRIRQLEEEKNSLQEQQEEEEEARK KNSLQEQQEEEEEARKNLEKQVLALQSQLA K N S A R K 1 1 1 0 0 3 6 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 14 0 1717.7391 P35580 P35580 1346 1359 MYH10 Myosin-10 yes yes 2 1.9419E-72 241.54 By MS/MS 1 0 1 1 4369300 0 0 4369300 10499 753 11059 45445 37809 37809 1 0 0 941430 NSLQEQQEEEEEARK KLNLSSRIRQLEEEKNSLQEQQEEEEEARK NSLQEQQEEEEEARKNLEKQVLALQSQLAD K N S R K N 1 1 1 0 0 3 6 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 15 1 1845.8341 P35580 P35580 1346 1360 MYH10 Myosin-10 yes yes 3 5.0798E-05 146.59 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 24440000 0 10272000 14167000 10500 753 11060 45446;45447;45448 37810;37811 37810 2 0 4960800 3052600 NSLTSKDPDIK GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ LQIKNSLTSKDPDIKAQYQQRWLAIDANAR K N S I K A 0 0 1 2 0 0 0 0 0 1 1 2 0 0 1 2 1 0 0 0 0 0 11 1 1216.6299 Q14974 Q14974 63 73 KPNB1 Importin subunit beta-1 yes yes 2 0.0057201 117.02 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 6464800 0 2418300 4046500 10501 1325 11061 45449;45450 37812;37813 37812 2 0 1089000 784840 NSLVDKPFAAK DRHWHEACFHCSQCRNSLVDKPFAAKEDQL SQCRNSLVDKPFAAKEDQLLCTDCYSNEYS R N S A K E 2 0 1 1 0 0 0 0 0 0 1 2 0 1 1 1 0 0 0 1 0 0 11 1 1188.6503 Q14192 Q14192 73 83 FHL2 Four and a half LIM domains protein 2 yes yes 2 0.050535 97.965 By MS/MS 6 0 1 1 10709000 0 0 10709000 10502 1288 11062 45451 37814 37814 1 0 0 1602200 NSLYLQMNSLR DSVKGRFTISRDNAKNSLYLQMNSLRAEDT DNAKNSLYLQMNSLRAEDTAVYYCAR____ K N S L R A 0 1 2 0 0 1 0 0 0 0 3 0 1 0 0 2 0 0 1 0 0 0 11 0 1337.6762 P01780;A0A0B4J1V1;P01763;P01762;A0A0C4DH32;P0DP04;A0A0B4J1X8;P01766;P01782 P01780 96 106 IGHV3-21;IGHV3-20;IGHV3-43 Ig heavy chain V-III region JON;Ig heavy chain V-III region WEA;Ig heavy chain V-III region TRO;Ig heavy chain V-III region BRO;Ig heavy chain V-III region DOB yes no 2 4.1995E-10 172.59 By MS/MS 6.5 3.04 1 1 1 1 4 17900000 17900000 0 0 10503 378 11063 45452;45453;45454;45455 37815;37816 37816 1 17292000 0 0 NSMIALVDNLASK TEVTKRPLTAATLFKNSMIALVDNLASKEP FKNSMIALVDNLASKEPYYVRCIKPNDKKS K N S S K E 2 0 2 1 0 0 0 0 0 1 2 1 1 0 0 2 0 0 0 1 0 0 13 0 1374.7177 O94832 O94832 570 582 MYO1D Unconventional myosin-Id yes yes 2 0.00090181 115.92 By MS/MS 2 0 1 1 9552400 0 0 9552400 10504 299 11064 45456 37817 37817 1 0 0 2158700 NSMPASSFQQQK EKARAKKREAEEVYRNSMPASSFQQQKLRV VYRNSMPASSFQQQKLRVCEVCSAYLGLHD R N S Q K L 1 0 1 0 0 3 0 0 0 0 0 1 1 1 1 3 0 0 0 0 0 0 12 0 1351.619 Q9NQ29;Q9Y383 Q9Y383 175 186 LUC7L;LUC7L2 Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 no no 2 0.0033421 106.88 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 24711000 0 2763300 21948000 10505 2259;2030 11065 45457;45458;45459 37818;37819 37818 2 0 712290 3155800 NSNLVGAAHEELQQSR TYSAKLDNARQSAERNSNLVGAAHEELQQS SNLVGAAHEELQQSRIRIDSLSAQLSQLQK R N S S R I 2 1 2 0 0 2 2 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 16 0 1751.8551 P02545 P02545 281 296 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 3.2613E-225 316.12 By MS/MS By MS/MS By MS/MS 3.23 1.41 3 4 6 4 4 1 2 9 11 1738500000 33788000 508610000 1196100000 10506 387 11066 45460;45461;45462;45463;45464;45465;45466;45467;45468;45469;45470;45471;45472;45473;45474;45475;45476;45477;45478;45479;45480;45481 37820;37821;37822;37823;37824;37825;37826;37827;37828;37829;37830;37831;37832;37833;37834;37835;37836;37837;37838;37839;37840;37841;37842;37843;37844;37845 37821 26 38984000 194500000 222440000 NSNPALNDNLEK TAGLDIFAKFSAYIKNSNPALNDNLEKGLL YIKNSNPALNDNLEKGLLKALKVLDNYLTS K N S E K G 1 0 4 1 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 12 0 1327.6368 O00299 O00299 120 131 CLIC1 Chloride intracellular channel protein 1 yes yes 2 0.004694 103.87 By MS/MS 6.5 0.5 1 1 2 16928000 0 0 16928000 10507 117 11067 45482;45483 37846;37847 37846 2 0 0 2728100 NSNPDEIEIDFETLKPSTLR GRVVHIIQSREPSLKNSNPDEIEIDFETLK EIEIDFETLKPSTLRELERYVTSCLRKKRK K N S L R E 0 1 2 2 0 0 3 0 0 2 2 1 0 1 2 2 2 0 0 0 0 0 20 1 2317.1438 O60885 O60885 646 665 BRD4 Bromodomain-containing protein 4 yes yes 3 3.2221E-08 108.45 By MS/MS 1.5 0.5 1 1 2 14195000 0 0 14195000 10508 239 11068 45484;45485 37848 37848 1 0 0 3173800 NSPLTVPMFLSLFSR TRVYSTALSSFLTKRNSPLTVPMFLSLFSR NSPLTVPMFLSLFSRHPVLCQSLLPILVQH R N S S R H 0 1 1 0 0 0 0 0 0 0 3 0 1 2 2 3 1 0 0 1 0 0 15 0 1707.9018 Q9BQG0 Q9BQG0 990 1004 MYBBP1A Myb-binding protein 1A yes yes 2;3 2.2361E-17 188.26 By MS/MS By MS/MS 2 0 4 3 1 36597000 0 22450000 14147000 10509 1885 11069;11070 45486;45487;45488;45489 37849;37850;37851;37852 37852 676 4 0 10110000 3196800 NSPVEAVFSYLTGK TATPQIEEEVSLTQKNSPVEAVFSYLTGKR KNSPVEAVFSYLTGKRISEACSLAQQSGDH K N S G K R 1 0 1 0 0 0 1 1 0 0 1 1 0 1 1 2 1 0 1 2 0 0 14 0 1510.7668 P52948 P52948 1328 1341 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 2 0.0075273 84.718 By MS/MS 2 0 1 1 14308000 0 0 14308000 10510 916 11071 45490 37853 37853 1 0 0 3233400 NSQDDYDEER ERYDECLAVYRDLVRNSQDDYDEERKTNLS RDLVRNSQDDYDEERKTNLSAVVAAQSNWE R N S E R K 0 1 1 3 0 1 2 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 10 0 1269.4746 O76094 O76094 138 147 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.050681 72.643 By MS/MS 3 0 1 1 1562000 0 0 1562000 10511 296 11072 45491 37854 37854 1 0 0 302950 NSQEDSEDSEDKDVK RSSPREAKNKRRSGKNSQEDSEDSEDKDVK NSQEDSEDSEDKDVKTKKDDSHSAEDSEDE K N S V K T 0 0 1 4 0 1 3 0 0 0 0 2 0 0 0 3 0 0 0 1 0 0 15 1 1723.702 Q9H1E3 Q9H1E3 53 67 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 2;3 0.010584 95.401 By MS/MS 6 0 2 2 2641600 0 2641600 0 10512 1968 11073 45492;45493 37855;37856 37856 2 0 914440 0 NSQFAGGPLGNPNTTAK SVLQELKGLQEFLDRNSQFAGGPLGNPNTT QFAGGPLGNPNTTAKVQQRLIGFMRPENGN R N S A K V 2 0 3 0 0 1 0 3 0 0 1 1 0 1 2 1 2 0 0 0 0 0 17 0 1672.8169 O75694 O75694 724 740 NUP155 Nuclear pore complex protein Nup155 yes yes 2 1.0326E-05 113.76 By MS/MS 1.5 0.5 1 1 2 11074000 0 0 11074000 10513 281 11074 45494;45495 37857 37857 1 0 0 2468300 NSQGEEVAQR QNSWGTGEDVKVILKNSQGEEVAQRSTVFK KVILKNSQGEEVAQRSTVFKTTIPEEEEEE K N S Q R S 1 1 1 0 0 2 2 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 10 0 1116.516 P20700 P20700 533 542 LMNB1 Lamin-B1 yes yes 2 1.4452E-38 209.58 By MS/MS By MS/MS 3.17 0.373 5 1 2 4 4547300 0 4547300 0 10514 619 11075 45496;45497;45498;45499;45500;45501 37858;37859;37860;37861;37862;37863;37864;37865;37866;37867 37860 10 0 1932200 0 NSQGSEMFGDDDKRK KTIADLELHYQEFIRNSQGSEMFGDDDKRK NSQGSEMFGDDDKRKIQSQFTDAQKHYQTL R N S R K I 0 1 1 3 0 1 1 2 0 0 0 2 1 1 0 2 0 0 0 0 0 0 15 2 1712.7424 P15924 P15924 593 607 DSP Desmoplakin yes yes 3 0.006143 68.413 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 8073600 0 3549200 4524400 10515 572 11076 45502;45503;45504 37868;37869 37869 2 0 1699900 974850 NSRPEANEALER TAGMDIFAKFSAYIKNSRPEANEALERGLL YIKNSRPEANEALERGLLKTLQKLDEYLNS K N S E R G 2 2 2 0 0 0 3 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 12 1 1384.6695 Q9Y696 Q9Y696 131 142 CLIC4 Chloride intracellular channel protein 4 yes yes 2 0.0031984 127.56 By MS/MS 7 0 1 1 2320100 0 0 2320100 10516 2309 11077 45505 37870 37870 1 0 0 411680 NSSLAEFVQSLSQTMGFPQDQIR YDEEKVKYTVFKVLKNSSLAEFVQSLSQTM QSLSQTMGFPQDQIRLWPMQARSNGTKRPA K N S I R L 1 1 1 1 0 4 1 1 0 1 2 0 1 2 1 4 1 0 0 1 0 0 23 0 2582.2435 Q93009 Q93009 599 621 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2;3 7.5117E-65 224.59 By MS/MS 1.67 0.471 1 2 3 9783700 0 0 9783700 10517 1738 11078 45506;45507;45508 37871;37872 37872 2 0 0 2201000 NSSQFFQSYVER YKKKYSDADIEPFLKNSSQFFQSYVERGLR FLKNSSQFFQSYVERGLRVIEMEREGKGRI K N S E R G 0 1 1 0 0 2 1 0 0 0 0 0 0 2 0 3 0 0 1 1 0 0 12 0 1490.679 Q14008 Q14008 1871 1882 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 2.5318E-58 232.88 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 50587000 1373900 10181000 39032000 10518 1279 11079 45509;45510;45511;45512;45513 37873;37874 37874 2 1373900 4909900 8363300 NSSQGSVDVSMGHSSFISR EFEYLMKKRSVTIGRNSSQGSVDVSMGHSS GSVDVSMGHSSFISRRHLEIFTPPGGGGHG R N S S R R 0 1 1 1 0 1 0 2 1 1 0 0 1 1 0 7 0 0 0 2 0 0 19 0 1980.896 Q01167 Q01167 59 77 FOXK2 Forkhead box protein K2 yes yes 3 0.064729 27.443 By MS/MS 3 0 1 1 12025000 0 0 12025000 10519 1132 11080 45514 37875 37875 1 0 0 2332200 NSSTIIQNPVETPK STDNQRQQQLNDVVKNSSTIIQNPVETPKK KNSSTIIQNPVETPKKDYSLLPLLAAAPQV K N S P K K 0 0 2 0 0 1 1 0 0 2 0 1 0 0 2 2 2 0 0 1 0 0 14 0 1526.794 P38432 P38432 445 458 COIL Coilin yes yes 2 0.0027255 98.156 By MS/MS 3 0 1 1 14251000 0 0 14251000 10520 772 11081 45515 37876 37876 1 0 0 2764000 NSSYFVEWIPNNVK SMKEVDEQMLNVQNKNSSYFVEWIPNNVKT KNSSYFVEWIPNNVKTAVCDIPPRGLKMSA K N S V K T 0 0 3 0 0 0 1 0 0 1 0 1 0 1 1 2 0 1 1 2 0 0 14 0 1695.8257 P07437;P68371;Q13885;Q9BVA1;P04350;Q13509;Q9BUF5 P68371 337 350 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3;TUBB6 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain;Tubulin beta-6 chain no no 2;3 5.3429E-34 208.74 By MS/MS By MS/MS By MS/MS 4.59 2.47 4 2 3 5 4 3 2 2 1 1 4 13 10 2838500000 42869000 1557200000 1238400000 10521 1079;462;1274;414;1254;1905 11082 45516;45517;45518;45519;45520;45521;45522;45523;45524;45525;45526;45527;45528;45529;45530;45531;45532;45533;45534;45535;45536;45537;45538;45539;45540;45541;45542 37877;37878;37879;37880;37881;37882;37883;37884;37885;37886;37887;37888;37889;37890;37891;37892;37893;37894;37895;37896;37897;37898;37899;37900;37901;37902;37903;37904 37884 27 33852000 456150000 210800000 NSSYVHGGLDSNGKPADAVYGQK LLNQAPDMLHRFYGKNSSYVHGGLDSNGKP LDSNGKPADAVYGQKEIHRKVMSQNFTNCH K N S Q K E 2 0 2 2 0 1 0 4 1 0 1 2 0 0 1 3 0 0 2 2 0 0 23 1 2363.1142 Q13283 Q13283 37 59 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3;4 8.2398E-25 170.27 By MS/MS By MS/MS 3.38 0.696 1 3 4 3 5 183520000 0 88072000 95452000 10522 1236 11083 45543;45544;45545;45546;45547;45548;45549;45550 37905;37906;37907;37908;37909 37905 5 0 29463000 16816000 NSSYVHGGVDASGKPQEAVYGQNDIHHK LLNKAPEYLHRFYGRNSSYVHGGVDASGKP KPQEAVYGQNDIHHKVLSLNFSECHTKIRH R N S H K V 2 0 2 2 0 2 1 4 3 1 0 2 0 0 1 3 0 0 2 3 0 0 28 1 2993.4016 Q9UN86 Q9UN86 37 64 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 4;5 6.4191E-21 103.21 By MS/MS By MS/MS 3.62 0.857 1 2 4 1 2 6 131360000 0 47377000 83981000 10523 2203 11084 45551;45552;45553;45554;45555;45556;45557;45558 37910;37911;37912;37913;37914 37910 5 0 15723000 14804000 NSTECTLILTEGDSAK KGIPKLDDANDAGGRNSTECTLILTEGDSA STECTLILTEGDSAKTLAVSGLGVVGRDKY R N S A K T 1 0 1 1 1 0 2 1 0 1 2 1 0 0 0 2 3 0 0 0 0 0 16 0 1737.8091 P11388 P11388 451 466 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.4453E-26 196.57 By MS/MS 1.5 0.5 1 1 2 27648000 0 0 27648000 10524 524 11085 45559;45560 37915 37915 1 0 0 6001700 NSVPVTVAMVER GEDGDRVPRGLKGKKNSVPVTVAMVERWKQ GKKNSVPVTVAMVERWKQAAKQRLTPKLFH K N S E R W 1 1 1 0 0 0 1 0 0 0 0 0 1 0 1 1 1 0 0 4 0 0 12 0 1300.6809 Q9Y3T9 Q9Y3T9 145 156 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.027104 80.037 By MS/MS By matching 2.67 0.471 1 2 2 1 30748000 0 14831000 15917000 10525 2277 11086 45561;45562;45563 37916;37917 37916 2 0 6542300 3087100 NSVTPDMMEEMYK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA IKNSVTPDMMEEMYKKAHAAIRENPVYEKK K N S Y K K 0 0 1 1 0 0 2 0 0 0 0 1 3 0 1 1 1 0 1 1 0 0 13 0 1573.6463 P46777 P46777 229 241 RPL5 60S ribosomal protein L5 yes yes 2 0.00047083 121.36 By matching By MS/MS By MS/MS 6 0 3 1 1 1 64909000 1254800 7391500 56262000 10526 828 11087 45564;45565;45566 37918;37919 37919 2 1670700 2558700 8417400 NSVTPDMMEEMYKK EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA KNSVTPDMMEEMYKKAHAAIRENPVYEKKP K N S K K A 0 0 1 1 0 0 2 0 0 0 0 2 3 0 1 1 1 0 1 1 0 0 14 1 1701.7412 P46777 P46777 229 242 RPL5 60S ribosomal protein L5 yes yes 2;3 0.00064813 132.17 By MS/MS By MS/MS 6 0 4 2 2 88100000 0 24228000 63872000 10527 828 11088 45567;45568;45569;45570 37920;37921;37922 37922 3 0 8386800 9555900 NTAAVLEAAQELLR VWPVLRERAGAPGARNTAAVLEAAQELLRN RNTAAVLEAAQELLRNRPISLGHVVVAPPG R N T L R N 4 1 1 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 14 0 1497.8151 Q9BVQ7 Q9BVQ7 127 140 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 3.382E-07 167.3 By MS/MS By MS/MS 2.25 0.829 1 1 2 3 1 7275500 0 2267200 5008300 10528 1918 11089 45571;45572;45573;45574 37923;37924;37925 37925 3 0 1002400 971370 NTAPDNGPILLQAQTTQR CTVKLWPLPKALLSKNTAPDNGPILLQAQT PDNGPILLQAQTTQRCHDKDINSVAIAPND K N T Q R C 2 1 2 1 0 3 0 1 0 1 2 0 0 0 2 0 3 0 0 0 0 0 18 0 1936.9967 Q12788 Q12788 459 476 TBL3 Transducin beta-like protein 3 yes yes 2 5.9216E-13 173.68 By MS/MS 3 0 1 1 3658500 0 3658500 0 10529 1197 11090 45575 37926 37926 1 0 1559600 0 NTDEMVELR PAEDMEEEQAFKRSRNTDEMVELRILLQSK AFKRSRNTDEMVELRILLQSKNAGAVIGKG R N T L R I 0 1 1 1 0 0 2 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1105.5074 P61978 P61978 38 46 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 3.4427E-53 219.56 By MS/MS By MS/MS By MS/MS 4.64 1.72 1 2 3 2 1 1 1 1 2 8 307630000 28653000 33750000 245230000 10530 1002 11091;11092 45576;45577;45578;45579;45580;45581;45582;45583;45584;45585;45586 37927;37928;37929;37930;37931;37932;37933;37934;37935;37936;37937 37928 11 22354000 11201000 39509000 NTDQASMPDNTAAQK SGVLQLGNIVFKKERNTDQASMPDNTAAQK NTDQASMPDNTAAQKVSHLLGINVTDFTRG R N T Q K V 3 0 2 2 0 2 0 0 0 0 0 1 1 0 1 1 2 0 0 0 0 0 15 0 1590.6944 P35579 P35579 359 373 MYH9 Myosin-9 no no 2 5.0512E-12 183.08 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 45161000 0 42893000 2268100 10531 752 11093 45587;45588;45589;45590 37938;37939;37940;37941;37942 37938 5 0 20799000 488690 NTDQASMPENTVAQK SSVLQFGNISFKKERNTDQASMPENTVAQK NTDQASMPENTVAQKLCHLLGMNVMEFTRA R N T Q K L 2 0 2 1 0 2 1 0 0 0 0 1 1 0 1 1 2 0 0 1 0 0 15 0 1632.7413 P35580 P35580 366 380 MYH10 Myosin-10 yes yes 2 6.4686E-18 193.73 By MS/MS By MS/MS 1 0 3 2 1 34681000 0 24732000 9948400 10532 753 11094;11095 45591;45592;45593 37943;37944;37945 37944 373 3 0 12089000 2143500 NTDVPESQQNFHRPVK VIHSKTKVNVKSVKRNTDVPESQQNFHRPV TDVPESQQNFHRPVKVRKKQIDKEPKIQSC R N T V K V 0 1 2 1 0 2 1 0 1 0 0 1 0 1 2 1 1 0 0 2 0 0 16 1 1894.9286 Q92576 Q92576 531 546 PHF3 PHD finger protein 3 yes yes 3 2.9618E-05 100.45 By MS/MS 1 0 1 1 2936100 0 0 2936100 10533 1709 11096 45594 37946 37946 1 0 0 632630 NTDVVATLK EELGTLQVTSQILQKNTDVVATLKKIRRYK SQILQKNTDVVATLKKIRRYKANKDVMEKA K N T L K K 1 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 2 0 0 9 0 959.52876 Q7Z4V5 Q7Z4V5 516 524 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 2 0.00050444 118.33 By MS/MS 2.5 0.5 1 1 2 25690000 0 0 25690000 10534 1533 11097 45595;45596 37947;37948 37947 2 0 0 5805400 NTEEEGLKYK VLADQGKSFATASHRNTEEEGLKYKSKVSL TASHRNTEEEGLKYKSKVSLKGNRESDGFR R N T Y K S 0 0 1 0 0 0 3 1 0 0 1 2 0 0 0 0 1 0 1 0 0 0 10 1 1209.5877 Q9NYF8 Q9NYF8 430 439 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.038294 98.033 By MS/MS 2 0 1 1 5900700 0 5900700 0 10535 2097 11098 45597 37949 37949 1 0 2657200 0 NTEIGFLQDALSKPHGTVK TRFGMKIIDISDVFRNTEIGFLQDALSKPH GFLQDALSKPHGTVKAICIPEGAKYLKRKD R N T V K A 1 0 1 1 0 1 1 2 1 1 2 2 0 1 1 1 2 0 0 1 0 0 19 1 2054.0797 Q6PI48 Q6PI48 350 368 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 3 3.5137E-09 113.53 By MS/MS By MS/MS 3 0 2 1 1 22653000 0 10949000 11705000 10536 1495 11099 45598;45599 37950;37951 37950 2 0 4667400 2270200 NTGESASQLLDAETAER ESRISELTSELTDERNTGESASQLLDAETA GESASQLLDAETAERLRAEKEMKELQTQYD R N T E R L 3 1 1 1 0 1 3 1 0 0 2 0 0 0 0 2 2 0 0 0 0 0 17 0 1790.8282 Q92614 Q92614 1303 1319 MYO18A Unconventional myosin-XVIIIa yes yes 2 4.4826E-48 223.39 By MS/MS 1 0 1 1 3749800 0 3749800 0 10537 1710 11100 45600 37952 37952 1 0 1832800 0 NTGVILANDANAER CAPGGKTSYMAQLMKNTGVILANDANAERL KNTGVILANDANAERLKSVVGNLHRLGVTN K N T E R L 3 1 3 1 0 0 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 14 0 1456.727 P46087 P46087 408 421 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 3.759E-58 234.65 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 4 3 127650000 0 40912000 86734000 10538 824 11101 45601;45602;45603;45604;45605;45606;45607 37953;37954;37955;37956;37957;37958;37959 37958 7 0 18022000 18801000 NTHATTHNAYDLEVIDIFK DRDSEEAEIIRKYVKNTHATTHNAYDLEVI TTHNAYDLEVIDIFKIEREGECQRYKPFKQ K N T F K I 2 0 2 2 0 0 1 0 2 2 1 1 0 1 0 0 3 0 1 1 0 0 19 0 2201.0753 P09874 P09874 820 838 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 4.1E-65 233.9 By MS/MS 2.3 1.1 3 3 2 2 10 487630000 0 0 487630000 10539 492 11102 45608;45609;45610;45611;45612;45613;45614;45615;45616;45617 37960;37961;37962;37963 37963 3 0 0 106720000 NTIEMQAITALAHLR VVDTPGILDHPLEDRNTIEMQAITALAHLR NTIEMQAITALAHLRAAVLYVMDLSEQCGH R N T L R A 3 1 1 0 0 1 1 0 1 2 2 0 1 0 0 0 2 0 0 0 0 0 15 0 1680.8981 Q9BZE4 Q9BZE4 234 248 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2;3 5.5027E-198 311.88 By matching By MS/MS By MS/MS 3.53 1.41 3 7 2 1 1 1 1 6 8 107520000 509560 46719000 60291000 10540 1941 11103;11104 45618;45619;45620;45621;45622;45623;45624;45625;45626;45627;45628;45629;45630;45631;45632 37964;37965;37966;37967;37968;37969;37970;37971;37972 37967 682 9 587920 20005000 11438000 NTIQWLENELNR KKKYEKEKEKNKILRNTIQWLENELNRWRN ILRNTIQWLENELNRWRNGETVPIDEQFDK R N T N R W 0 1 3 0 0 1 2 0 0 1 2 0 0 0 0 0 1 1 0 0 0 0 12 0 1528.7634 P33176 P33176 356 367 KIF5B Kinesin-1 heavy chain yes yes 2 0.0007113 121.5 By MS/MS 2 0 1 1 2785500 0 0 2785500 10541 730 11105 45633 37973 37973 1 0 0 629470 NTKEPPLSLTIHLTSPVVR YEILQSVDDAAIVIKNTKEPPLSLTIHLTS PPLSLTIHLTSPVVREEMEKVLAGETLSVN K N T V R E 0 1 1 0 0 0 1 0 1 1 3 1 0 0 3 2 3 0 0 2 0 0 19 1 2101.1895 Q12906 Q12906 159 177 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 1.3584E-09 130.36 By MS/MS By MS/MS 2.2 0.4 4 1 2 3 37265000 0 9569800 27695000 10542 1211 11106 45634;45635;45636;45637;45638 37974;37975;37976;37977 37975 4 0 4309400 6120500 NTKHEISEMNR EELQQTAGRHGDDLRNTKHEISEMNRMIQR DDLRNTKHEISEMNRMIQRLRAEIDNVKKQ R N T N R M 0 1 2 0 0 0 2 0 1 1 0 1 1 0 0 1 1 0 0 0 0 0 11 1 1357.6408 CON__P13647;P13647 CON__P13647 381 391 KRT5 Keratin, type II cytoskeletal 5 no no 3 0.044522 53.569 By MS/MS By MS/MS 5.33 2.36 1 2 2 1 1500300 0 975180 525120 + 10543 58 11107 45639;45640;45641 37978;37979 37979 2 0 482740 93180 NTKQEIAEINR EELQVTAGRHGDDLRNTKQEIAEINRMIQR DDLRNTKQEIAEINRMIQRLRSEIDHVKKQ R N T N R M 1 1 2 0 0 1 2 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 11 1 1314.6892 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 376 386 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 0.0015223 97.779 By MS/MS By MS/MS By matching 5.33 1.49 1 1 1 1 2 4 1 1 19222000 12893000 1614300 4714400 + 10544 68;37;47;69 11108 45642;45643;45644;45645;45646;45647 37980;37981;37982 37981 3 17873000 535720 836540 NTLFNLSNFLDK MVYGNERFIQYLASRNTLFNLSNFLDKSGL ASRNTLFNLSNFLDKSGLQGYDMSTFIRRY R N T D K S 0 0 3 1 0 0 0 0 0 0 3 1 0 2 0 1 1 0 0 0 0 0 12 0 1424.73 Q13492;O60641 Q13492 101 112 PICALM;SNAP91 Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180 yes no 2 0.060286 70.412 By MS/MS 4 0 1 1 1084000 0 1084000 0 10545 1252 11109 45648 37983 37983 1 0 359740 0 NTLLIAGLQAR FPDKPITQYPHAVGKNTLLIAGLQARNNAR AVGKNTLLIAGLQARNNARVIFSGSLDFFS K N T A R N 2 1 1 0 0 1 0 1 0 1 3 0 0 0 0 0 1 0 0 0 0 0 11 0 1168.6928 P39656 P39656 240 250 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes yes 2 0.001289 111.39 By MS/MS 5 0 1 1 12642000 0 12642000 0 10546 779 11110 45649 37984 37984 1 0 3258700 0 NTLQLHR HHTIGGSRRAAWRRRNTLQLHRYR______ RRAAWRRRNTLQLHRYR_____________ R N T H R Y 0 1 1 0 0 1 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 7 0 880.4879 P61313 P61313 196 202 RPL15 60S ribosomal protein L15 yes yes 2 0.0047267 128.38 By matching By MS/MS By MS/MS 4.14 2.42 2 1 1 1 2 1 3 3 80184000 598530 46741000 32844000 10547 991 11111 45650;45651;45652;45653;45654;45655;45656 37985;37986;37987;37988 37987 4 598530 25394000 5840800 NTLTNIAMRPGLEGYALPR RAKATRISIQCRSCRNTLTNIAMRPGLEGY NIAMRPGLEGYALPRKCNTDQAGRPKCPLD R N T P R K 2 2 2 0 0 0 1 2 0 1 3 0 1 0 2 0 2 0 1 0 0 0 19 1 2086.0993 P33992 P33992 177 195 MCM5 DNA replication licensing factor MCM5 yes yes 3 2.8041E-10 154.26 By MS/MS By matching 2.67 0.471 1 2 2 1 18462000 0 12716000 5745600 10548 732 11112 45657;45658;45659 37989;37990 37990 2 0 5489100 1114400 NTLTQTTENLR TRENRSLSEEIKRLKNTLTQTTENLRRVEE KRLKNTLTQTTENLRRVEEDIQQQKATGSE K N T L R R 0 1 2 0 0 1 1 0 0 0 2 0 0 0 0 0 4 0 0 0 0 0 11 0 1289.6575 P15924 P15924 1414 1424 DSP Desmoplakin yes yes 2 1.4914E-16 182.65 By MS/MS By MS/MS By MS/MS 5.88 3.89 3 1 1 1 2 5 1 2 51308000 32947000 16555000 1806200 10549 572 11113 45660;45661;45662;45663;45664;45665;45666;45667 37991;37992;37993 37993 3 35617000 8092000 3950300 NTLYLQMNSLK APVKGRFTISRDDSKNTLYLQMNSLKTEDT DDSKNTLYLQMNSLKTEDTAVYYCTT____ K N T L K T 0 0 2 0 0 1 0 0 0 0 3 1 1 0 0 1 1 0 1 0 0 0 11 0 1323.6857 A0A0B4J1V0 A0A0B4J1V0 98 108 IGHV3-15 yes yes 2 0.065477 66.056 By MS/MS 9 0 1 1 0 0 0 0 10550 3 11114 45668 37994 37994 1 0 0 0 NTLYLQMNSLR DSVKGRFTISRDNAKNTLYLQMNSLRAEDT DNAKNTLYLQMNSLRAEDTAVYYCAR____ K N T L R A 0 1 2 0 0 1 0 0 0 0 3 0 1 0 0 1 1 0 1 0 0 0 11 0 1351.6918 A0A0B4J1X5;A0A0C4DH42;P0DP02;P01767;P01772;P0DP03;P01768;P01764 A0A0B4J1X5 96 106 IGHV3-74;IGHV3-66;IGHV3-23 Ig heavy chain V-III region BUT;Ig heavy chain V-III region KOL;Ig heavy chain V-III region CAM;Ig heavy chain V-III region 23 yes no 2 1.9437E-95 202.05 By MS/MS 6.67 4.03 1 1 1 3 8129100 8129100 0 0 10551 4 11115 45669;45670;45671 37995;37996;37997 37996 3 12039000 0 0 NTNAAEESLPEIQK AELKSLEDKAAEVVKNTNAAEESLPEIQKE KNTNAAEESLPEIQKEHRNLLQELKVIQEN K N T Q K E 2 0 2 0 0 1 3 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 14 0 1542.7526 Q9NTJ3 Q9NTJ3 975 988 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.0030281 96.604 By MS/MS 1 0 1 1 9455800 0 0 9455800 10552 2054 11116 45672 37998 37998 1 0 0 2037400 NTNPNFVR QLYKEQLAKLMATLRNTNPNFVRCIIPNHE KLMATLRNTNPNFVRCIIPNHEKKAGKLDP R N T V R C 0 1 3 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 8 0 960.47773 P35579;P35580 P35579 663 670 MYH9;MYH10 Myosin-9;Myosin-10 no no 2 0.00047622 129.4 By MS/MS 1 0 1 1 84732000 0 84732000 0 10553 752;753 11117 45673 37999;38000 37999 2 0 41416000 0 NTNSVPETAPAAIPETK WHLTDKKRERMQIKRNTNSVPETAPAAIPE NSVPETAPAAIPETKRNAEFLTCNIPTSNA R N T T K R 3 0 2 0 0 0 2 0 0 1 0 1 0 0 3 1 3 0 0 1 0 0 17 0 1738.8737 P55265 P55265 368 384 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.0033766 79.633 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 7920700 0 2159300 5761400 10554 941 11118 45674;45675 38001;38002 38001 2 0 972350 1117400 NTSELVSSEVYLLSALAALQK PQLPSLMPSLLTTMKNTSELVSSEVYLLSA SSEVYLLSALAALQKVVETLPHFISPYLEG K N T Q K V 3 0 1 0 0 1 2 0 0 0 5 1 0 0 0 4 1 0 1 2 0 0 21 0 2235.1998 Q9H583 Q9H583 1746 1766 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 1.0931E-13 128.76 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 11376000 0 530070 10846000 10555 1984 11119 45676;45677;45678 38003;38004;38005 38004 3 0 259090 2381200 NTSEQDQPMGGWEMIR CIEEIDVDGKFIRLKNTSEQDQPMGGWEMI TSEQDQPMGGWEMIRKIGDTSVSYKYTSRY K N T I R K 0 1 1 1 0 2 2 2 0 1 0 0 2 0 1 1 1 1 0 0 0 0 16 0 1877.8036 P20700 P20700 458 473 LMNB1 Lamin-B1 yes yes 2;3 1.6767E-46 218.06 By MS/MS By MS/MS By MS/MS 3.44 1.46 1 2 8 2 1 1 1 1 1 14 282720000 20432000 11689000 250600000 10556 619 11120;11121;11122 45679;45680;45681;45682;45683;45684;45685;45686;45687;45688;45689;45690;45691;45692;45693;45694 38006;38007;38008;38009;38010;38011;38012;38013;38014;38015;38016 38011 273;274 11 23573000 4983200 48601000 NTTGVTEEALK GMRMQHNLEQQIQARNTTGVTEEALKEFSM IQARNTTGVTEEALKEFSMMFKHFDKDKSG R N T L K E 1 0 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 11 0 1161.5877 Q13813 Q13813 2316 2326 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.029092 79.128 By MS/MS By MS/MS 1 0 2 1 1 22457000 0 12328000 10129000 10557 1268 11123 45695;45696 38017;38018 38018 2 0 6025800 2182400 NTTWEDVGLWDPSLTK IEDFKQFEPNDFYLKNTTWEDVGLWDPSLT TTWEDVGLWDPSLTKNQDYRTKPFCCSACP K N T T K N 0 0 1 2 0 0 1 1 0 0 2 1 0 0 1 1 3 2 0 1 0 0 16 0 1860.8894 Q9H2P0 Q9H2P0 50 65 ADNP Activity-dependent neuroprotector homeobox protein yes yes 2 0.0027506 87.498 By MS/MS 1.5 0.5 1 1 2 7663600 0 0 7663600 10558 1975 11124 45697;45698 38019 38019 1 0 0 1702500 NTTYDLIANIVHDGKPSEGSYR DLREYLSEEVQAVHKNTTYDLIANIVHDGK ANIVHDGKPSEGSYRIHVLHHGTGKWYELQ K N T Y R I 1 1 2 2 0 0 1 2 1 2 1 1 0 0 1 2 2 0 2 1 0 0 22 1 2449.1874 Q53GS9 Q53GS9 494 515 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 4 0.00083933 62.064 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 27441000 0 5544700 21896000 10559 1426 11125 45699;45700;45701 38020;38021 38021 2 0 2034100 4246800 NTVANSPQTLLAGMNK YLADRVIVFDGVPSKNTVANSPQTLLAGMN TVANSPQTLLAGMNKFLSQLEITFRRDPNN K N T N K F 2 0 3 0 0 1 0 1 0 0 2 1 1 0 1 1 2 0 0 1 0 0 16 0 1657.8458 P61221 P61221 542 557 ABCE1 ATP-binding cassette sub-family E member 1 yes yes 2 0.00059568 97.463 By MS/MS 4.5 0.5 1 1 2 4927700 0 4927700 0 10560 985 11126 45702;45703 38022 38022 1 0 1578900 0 NTVEITELPVR QNQYAVSGEIFVVDRNTVEITELPVRTWTQ VVDRNTVEITELPVRTWTQVYKEQVLEPML R N T V R T 0 1 1 0 0 0 2 0 0 1 1 0 0 0 1 0 2 0 0 2 0 0 11 0 1269.6929 Q02880 Q02880 940 950 TOP2B DNA topoisomerase 2-beta yes yes 2 0.00010701 140.83 By MS/MS By matching 1.5 0.5 1 1 1 1 24601000 0 14440000 10162000 10561 1150 11127 45704;45705 38023 38023 1 0 7057900 2296300 NTVLATWQPYTTSK SFDLLKAVCLEFSPKNTVLATWQPYTTSKD KNTVLATWQPYTTSKDGTAGIPNLQLYDVK K N T S K D 1 0 1 0 0 1 0 0 0 0 1 1 0 0 1 1 4 1 1 1 0 0 14 0 1608.8148 Q9BY44 Q9BY44 87 100 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 2 7.0626E-05 158.4 By MS/MS 3.5 0.5 1 1 2 10858000 0 10858000 0 10562 1932 11128 45706;45707 38024;38025 38024 2 0 4053200 0 NTVLCNVVEQFLQADLAR PQCRAVYQARPQLHKNTVLCNVVEQFLQAD LCNVVEQFLQADLAREPPADVWTPPARASA K N T A R E 2 1 2 1 1 2 1 0 0 0 3 0 0 1 0 0 1 0 0 3 0 0 18 0 2089.0626 Q14258 Q14258 66 83 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 2.8366E-08 116.84 By MS/MS 3 0 1 1 1451200 0 0 1451200 10563 1297 11129 45708 38026 38026 1 0 0 281460 NTVLQQHLETLR AVEKLEVDVIQERSRNTVLQQHLETLRQVL RSRNTVLQQHLETLRQVLTSSFASMPLPGS R N T L R Q 0 1 1 0 0 2 1 0 1 0 3 0 0 0 0 0 2 0 0 1 0 0 12 0 1450.7892 Q9NP66 Q9NP66 278 289 HMG20A High mobility group protein 20A yes yes 2;3 7.5565E-05 141.95 By MS/MS By MS/MS 5 0 3 2 1 23279000 0 12921000 10358000 10564 2018 11130 45709;45710;45711 38027;38028;38029 38028 3 0 3330600 1444700 NVADATRPEDLRR MSRYTRPPNTSLFIRNVADATRPEDLRREF IRNVADATRPEDLRREFGRYGPIVDVYIPL R N V R R E 2 3 1 2 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 13 2 1511.7805 Q8WXF0 Q8WXF0 16 28 SRSF12 Serine/arginine-rich splicing factor 12 yes yes 3 0.034967 57.802 By MS/MS 6 0 1 1 3947100 0 3947100 0 10565 1694 11131 45712 38030 38030 1 0 1366300 0 NVADDTRSEDLR MSRYLRPPNTSLFVRNVADDTRSEDLRREF FVRNVADDTRSEDLRREFGRYGPIVDVYVP R N V L R R 1 2 1 3 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 12 1 1389.6484 O75494 O75494 16 27 SRSF10 Serine/arginine-rich splicing factor 10 yes yes 2 0.011749 112.36 By MS/MS 7 0 1 1 1854200 0 0 1854200 10566 267 11132 45713 38031 38031 1 0 0 329020 NVADDTRSEDLRR MSRYLRPPNTSLFVRNVADDTRSEDLRREF VRNVADDTRSEDLRREFGRYGPIVDVYVPL R N V R R E 1 3 1 3 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 13 2 1545.7495 O75494 O75494 16 28 SRSF10 Serine/arginine-rich splicing factor 10 yes yes 3 0.033699 58.487 By MS/MS 6.5 0.5 1 1 2 11900000 0 11900000 0 10567 267 11133 45714;45715 38032 38032 1 0 4563100 0 NVALLSQLYHSPAR EPITVKFAANPNQNKNVALLSQLYHSPARR KNVALLSQLYHSPARRFGGPVHHQAQRFRF K N V A R R 2 1 1 0 0 1 0 0 1 0 3 0 0 0 1 2 0 0 1 1 0 0 14 0 1567.8471 Q15717 Q15717 192 205 ELAVL1 ELAV-like protein 1 yes yes 2;3 9.6364E-240 275.57 By MS/MS By MS/MS By MS/MS 5.63 1.63 2 3 4 5 2 2 1 1 13 5 411690000 14743000 228360000 168580000 10568 1380 11134 45716;45717;45718;45719;45720;45721;45722;45723;45724;45725;45726;45727;45728;45729;45730;45731;45732;45733;45734 38033;38034;38035;38036;38037;38038;38039;38040;38041;38042;38043;38044;38045;38046;38047;38048 38048 15 19631000 81314000 24766000 NVALVSGDTENAK PGDEQVNCFNINYLRNVALVSGDTENAKGQ LRNVALVSGDTENAKGQGEQGSTGGTNISS R N V A K G 2 0 2 1 0 0 1 1 0 0 1 1 0 0 0 1 1 0 0 2 0 0 13 0 1316.6572 Q16610 Q16610 506 518 ECM1 Extracellular matrix protein 1 yes yes 2 0.00033282 140.78 By MS/MS 6.75 3.49 1 1 1 1 4 10843000 10843000 0 0 10569 1391 11135 45735;45736;45737;45738 38049;38050;38051;38052 38049 4 11090000 0 0 NVDLLSDMVQEHDEPILK EDPKGIPEFWLTVFKNVDLLSDMVQEHDEP LLSDMVQEHDEPILKHLKDIKVKFSDAGQP K N V L K H 0 0 1 3 0 1 2 0 1 1 3 1 1 0 1 1 0 0 0 2 0 0 18 0 2094.0303 P55209 P55209 177 194 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 2;3 1.3219E-51 222.55 By matching By matching By MS/MS 3.75 1.48 1 1 4 1 1 1 1 6 108410000 2240800 1101800 105060000 10570 940 11136;11137 45739;45740;45741;45742;45743;45744;45745;45746 38053;38054;38055;38056 38054 452 4 1748200 538540 17121000 NVDSILEDYANYK LITRQKQLFYLPAKKNVDSILEDYANYKKS KKNVDSILEDYANYKKSRGNTDNKEYAVNE K N V Y K K 1 0 2 2 0 0 1 0 0 1 1 1 0 0 0 1 0 0 2 1 0 0 13 0 1542.7202 Q9UBU8 Q9UBU8 228 240 MORF4L1 Mortality factor 4-like protein 1 yes yes 2 0.015526 82.417 By MS/MS 5.5 0.5 1 1 2 3603500 0 0 3603500 10571 2135 11138 45747;45748 38057 38057 1 0 0 519700 NVEDFTGPR RSVPVRLHVSRIMLKNVEDFTGPRERSDLG SRIMLKNVEDFTGPRERSDLGFITFDITAD K N V P R E 0 1 1 1 0 0 1 1 0 0 0 0 0 1 1 0 1 0 0 1 0 0 9 0 1033.4829 P61009 P61009 50 58 SPCS3 Signal peptidase complex subunit 3 yes yes 2 0.00045749 123.72 By matching By MS/MS 7 0 2 1 1 5825500 0 1530500 4294900 10572 973 11139 45749;45750 38058 38058 1 0 878840 762110 NVELTEVGPR YISFRHHVYKKTDHRNVELTEVGPRFELKL KTDHRNVELTEVGPRFELKLYMIRLGTLEQ R N V P R F 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 10 0 1112.5826 Q96G21 Q96G21 241 250 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 2 8.0003E-07 154.56 By matching By MS/MS 6 0 2 1 1 23750000 1430700 0 22320000 10573 1787 11140 45751;45752 38059 38059 1 1904900 0 3339300 NVESFASMLR ELLQKVEPLQKGSPKNVESFASMLRHSPLT KGSPKNVESFASMLRHSPLTQMGPAKDKLV K N V L R H 1 1 1 0 0 0 1 0 0 0 1 0 1 1 0 2 0 0 0 1 0 0 10 0 1152.5597 Q9Y2Q9 Q9Y2Q9 76 85 MRPS28 28S ribosomal protein S28, mitochondrial yes yes 2 4.4211E-07 158.76 By MS/MS By MS/MS 7.2 0.748 1 2 2 3 2 26433000 0 13054000 13380000 10574 2245 11141 45753;45754;45755;45756;45757 38060;38061;38062;38063 38060 4 0 6915700 2258200 NVESGEEELASK WDRREPLSLINVRKRNVESGEEELASKLDH RKRNVESGEEELASKLDHYKAKATRHIFLI R N V S K L 1 0 1 0 0 0 4 1 0 0 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1290.5939 Q96HS1 Q96HS1 77 88 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0011728 116.23 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 61305000 0 3460800 57844000 10575 1796 11142 45758;45759;45760 38064;38065;38066 38064 3 0 1198000 8838600 NVFDEAILAALEPPEPK VKYVECSALTQKGLKNVFDEAILAALEPPE FDEAILAALEPPEPKKSRRCVLL_______ K N V P K K 3 0 1 1 0 0 3 0 0 1 2 1 0 1 3 0 0 0 0 1 0 0 17 0 1851.9618 P60953 P60953 167 183 CDC42 Cell division control protein 42 homolog yes yes 2;3 0.0024051 77.593 By MS/MS 7 0 2 2 1829800 0 0 1829800 10576 971 11143 45761;45762 38067;38068 38067 2 0 0 324680 NVFLLGFIPAK PLGETVLECYNCGCRNVFLLGFIPAKADSV CGCRNVFLLGFIPAKADSVVVLLCRQPCAS R N V A K A 1 0 1 0 0 0 0 1 0 1 2 1 0 2 1 0 0 0 0 1 0 0 11 0 1217.7172 Q92900 Q92900 190 200 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.03799 76.679 By MS/MS 2.5 0.5 1 1 2 4804200 0 4804200 0 10577 1729 11144 45763;45764 38069 38069 1 0 2157300 0 NVFNALIR TADGRLPADQRRGYKNVFNALIRITREEGV DQRRGYKNVFNALIRITREEGVLTLWRGCI K N V I R I 1 1 2 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 8 0 945.5396 Q02978 Q02978 163 170 SLC25A11 Mitochondrial 2-oxoglutarate/malate carrier protein yes yes 2 0.0018144 110.61 By MS/MS 6 0 1 1 5490100 0 0 5490100 10578 1151 11145 45765 38070 38070 1 0 0 821380 NVFNPEAFKPGNTHK GVLAYARLSHLSDSKNVFNPEAFKPGNTHK NVFNPEAFKPGNTHKCRIIDYSQMDELALL K N V H K C 1 0 3 0 0 0 1 1 1 0 0 2 0 2 2 0 1 0 0 1 0 0 15 1 1698.8478 Q14690 Q14690 404 418 PDCD11 Protein RRP5 homolog yes yes 3 0.018089 55.186 By MS/MS 1 0 1 1 6284800 0 6284800 0 10579 1314 11146 45766 38071 38071 1 0 3071900 0 NVGQFSGFPFEK KLLYNRPGTVSSLKKNVGQFSGFPFEKGSV LKKNVGQFSGFPFEKGSVQYKKKEEMLKKF K N V E K G 0 0 1 0 0 1 1 2 0 0 0 1 0 3 1 1 0 0 0 1 0 0 12 0 1355.651 P35659 P35659 126 137 DEK Protein DEK yes yes 2 0.00014254 136.52 By MS/MS By MS/MS 5 1.73 1 1 2 2 2 1 1 4 6 429390000 0 114770000 314620000 10580 758 11147 45767;45768;45769;45770;45771;45772;45773;45774;45775;45776 38072;38073;38074;38075;38076;38077;38078;38079;38080;38081;38082;38083;38084 38074 13 0 33241000 48937000 NVHLAPGWLMQLEK AINTAVKSGRWVMLKNVHLAPGWLMQLEKK KNVHLAPGWLMQLEKKLHSLQPHACFRLFL K N V E K K 1 0 1 0 0 1 1 1 1 0 3 1 1 0 1 0 0 1 0 1 0 0 14 0 1634.8603 Q14204 Q14204 4098 4111 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.050488 40.278 By MS/MS 1 0 1 1 0 0 0 0 10581 1292 11148 45777 38085 38085 1 0 0 0 NVIFEISPTEEVGDFEVK GVLLEIEDLQVNQFKNVIFEISPTEEVGDF FEISPTEEVGDFEVKAKFMGVQMETFMLHY K N V V K A 0 0 1 1 0 0 4 1 0 2 0 1 0 2 1 1 1 0 0 3 0 0 18 0 2051.0099 P46940 P46940 1587 1604 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 1.6248E-08 125.53 By MS/MS By MS/MS 2 0 2 1 1 13347000 0 2069000 11278000 10582 835 11149 45778;45779 38086;38087 38087 2 0 931680 2548600 NVIFQPVAELK FTTDDSICVLGISKRNVIFQPVAELKKQTD ISKRNVIFQPVAELKKQTDFEHRIPKEQWW R N V L K K 1 0 1 0 0 1 1 0 0 1 1 1 0 1 1 0 0 0 0 2 0 0 11 0 1256.7129 Q01813 Q01813 726 736 PFKP ATP-dependent 6-phosphofructokinase, platelet type yes yes 2 0.043786 75.294 By MS/MS 3 0 1 1 5405100 0 5405100 0 10583 1139 11150 45780 38088 38088 1 0 2304200 0 NVIGLQMGTNR ENPRNFSDNQLQEGKNVIGLQMGTNRGASQ QEGKNVIGLQMGTNRGASQAGMTGYGMPRQ K N V N R G 0 1 2 0 0 1 0 2 0 1 1 0 1 0 0 0 1 0 0 1 0 0 11 0 1201.6237 P37802 P37802 172 182 TAGLN2 Transgelin-2 yes yes 2 1.6539E-07 161.28 By matching By MS/MS 6.5 0.5 1 1 1 1 18422000 3106900 15315000 0 10584 768 11151 45781;45782 38089 38089 1 4136900 8794000 0 NVIIWGNHSSTQYPDVNHAK AQIALKLGVTANDVKNVIIWGNHSSTQYPD GNHSSTQYPDVNHAKVKLQGKEVGVYEALK K N V A K V 1 0 3 1 0 1 0 1 2 2 0 1 0 0 1 2 1 1 1 2 0 0 20 0 2279.1083 P40925 P40925 180 199 MDH1 Malate dehydrogenase, cytoplasmic yes yes 3 1.52E-05 80.238 By matching By MS/MS 6 0 2 1 1 8331800 0 2151800 6180000 10585 785 11152 45783;45784 38090 38090 1 0 744880 924590 NVIQSVLQAIR VTLREPLRQAIKKKKNVIQSVLQAIRKTVC KKKKNVIQSVLQAIRKTVCDWETGHEPFND K N V I R K 1 1 1 0 0 2 0 0 0 2 1 0 0 0 0 1 0 0 0 2 0 0 11 0 1239.7299 Q7L576 Q7L576 505 515 CYFIP1 Cytoplasmic FMR1-interacting protein 1 yes yes 2 0.014461 87.308 By MS/MS 2 0 1 1 761590 0 761590 0 10586 1524 11153 45785 38091 38091 1 0 342950 0 NVIVLQTVLQEVR VLLHQIDVLEDPAIRNVIVLQTVLQEVRNR IRNVIVLQTVLQEVRNRSAPVYKRIRDVTN R N V V R N 0 1 1 0 0 2 1 0 0 1 2 0 0 0 0 0 1 0 0 4 0 0 13 0 1509.8879 Q9Y2L1 Q9Y2L1 87 99 DIS3 Exosome complex exonuclease RRP44 yes yes 2 2.9688E-07 166.97 By MS/MS By MS/MS 2 0 2 1 1 6467000 0 1868800 4598200 10587 2242 11154 45786;45787 38092;38093 38093 2 0 841570 1039100 NVLDGELLNR RMLHVDRRTLQNAVRNVLDGELLNRYLYLS QNAVRNVLDGELLNRYLYLSTMERSELAKK R N V N R Y 0 1 2 1 0 0 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1141.6091 Q10570 Q10570 1397 1406 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.00021042 120.87 By MS/MS 1 0 1 1 2147900 0 2147900 0 10588 1194 11155 45788 38094 38094 1 0 1049900 0 NVLDSEDEIEELSK VPRLLFEDWTYDDFRNVLDSEDEIEELSKT RNVLDSEDEIEELSKTVVQVAKNQHFDGFV R N V S K T 0 0 1 2 0 0 4 0 0 1 2 1 0 0 0 2 0 0 0 1 0 0 14 0 1618.7574 Q9BWS9 Q9BWS9 162 175 CHID1 Chitinase domain-containing protein 1 yes yes 2 0.00062498 142.08 By MS/MS 5 0 1 1 16503000 0 0 16503000 10589 1926 11156 45789 38095 38095 1 0 0 2301800 NVLFSHLDDNER KDYKTMAALAKAIEKNVLFSHLDDNERSDI IEKNVLFSHLDDNERSDIFDAMFSVSFIAG K N V E R S 0 1 2 2 0 0 1 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 12 0 1457.6899 P10644 P10644 135 146 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 2 0.017909 81.865 By MS/MS 5 0 1 1 0 0 0 0 10590 514 11157 45790 38096 38096 1 0 0 0 NVLIEVNPQTR LNRAGLLQVYIHTQKNVLIEVNPQTRIPRT HTQKNVLIEVNPQTRIPRTFDRFCGLMVQL K N V T R I 0 1 2 0 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1281.7041 Q92979 Q92979 115 125 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 0.00078865 116.52 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 57912000 0 17603000 40309000 10591 1736 11158 45791;45792;45793 38097;38098 38098 2 0 10108000 7042400 NVLLDPQLVPGGGASEMAVAHALTEK SEVERNLQDAMQVCRNVLLDPQLVPGGGAS GGASEMAVAHALTEKSKAMTGVEQWPYRAV R N V E K S 4 0 1 1 0 1 2 3 1 0 4 1 1 0 2 1 1 0 0 3 0 0 26 0 2616.3581 P49368 P49368 400 425 CCT3 T-complex protein 1 subunit gamma yes yes 3 0.00011346 56.234 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 20168000 0 9104300 11064000 10592 854 11159 45794;45795 38099;38100 38099 2 0 3021400 2145900 NVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR AYVPSKQRDLKISRRNVLSDSRPAMAPGSS TTTAADATPSGSLARAGEAGKLEEVMQELR R N V A R A 8 2 1 2 0 0 0 3 1 0 3 0 1 0 4 7 4 0 0 1 0 0 37 1 3521.7169 Q9BR76 Q9BR76 410 446 CORO1B Coronin-1B yes yes 4 9.0396E-89 175.02 By MS/MS By MS/MS 4 0 3 2 1 69563000 0 46592000 22971000 10593 1887 11160;11161 45796;45797;45798 38101;38102;38103 38102 677 3 0 15462000 3751900 NVLSVMFR IHRIPTNEHLRPHTKNVLSVMFRFLETENE HLRPHTKNVLSVMFRFLETENEENVLICLR K N V F R F 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 0 0 2 0 0 8 0 964.51642 Q9Y4A5 Q9Y4A5 112 119 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.00058454 127.84 By MS/MS 1 0 1 1 1862500 0 0 1862500 10594 2285 11162 45799 38104 38104 1 0 0 401300 NVMEFLAPLKPVAIR HTVKLRGAPFNVTEKNVMEFLAPLKPVAIR NVMEFLAPLKPVAIRIVRNAHGNKTGYIFV K N V I R I 2 1 1 0 0 0 1 0 0 1 2 1 1 1 2 0 0 0 0 2 0 0 15 1 1696.9698 Q9Y4C8 Q9Y4C8 309 323 RBM19 Probable RNA-binding protein 19 yes yes 3 0.0041717 69.714 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 10669000 0 5933400 4735600 10595 2286 11163 45800;45801;45802;45803 38105;38106 38106 2 0 2437000 1070200 NVMILTNPVAAK LIAKLKSDGIPMYKRNVMILTNPVAAKKNV YKRNVMILTNPVAAKKNVSINTVTYEWAPP R N V A K K 2 0 2 0 0 0 0 0 0 1 1 1 1 0 1 0 1 0 0 2 0 0 12 0 1269.7115 Q9UGI8 Q9UGI8 90 101 TES Testin yes yes 2 0.046044 74.162 By MS/MS 4 1 1 1 2 20023000 0 0 20023000 10596 2143 11164 45804;45805 38107 38107 1 0 0 2872200 NVMVEPHR RGRGRGGKRGNQSGKNVMVEPHRHEGVFIC RGNQSGKNVMVEPHRHEGVFICRGKEDALV K N V H R H 0 1 1 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 0 2 0 0 8 0 980.48618 P22087 P22087 85 92 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2 0.0036154 104.45 By matching By MS/MS 5.67 0.471 1 2 2 1 6876100 0 3304100 3572000 10597 627 11165 45806;45807;45808 38108 38108 1 0 1054700 534410 NVMYFGGNSDASTIK LDRKNWRIFKGNSTRNVMYFGGNSDASTIK NVMYFGGNSDASTIKENQIDPPVVARYIRI R N V I K E 1 0 2 1 0 0 0 2 0 1 0 1 1 1 0 2 1 0 1 1 0 0 15 0 1602.7348 CON__Q28107 CON__Q28107 2001 2015 yes yes 2 0.00028429 128.85 By MS/MS 4 0 1 1 7649200 0 0 7649200 + 10598 77 11166 45809 38109 38109 1 0 0 1249400 NVNIQNFHISWK EGLLLWCQRKTAPYKNVNIQNFHISWKDGL PYKNVNIQNFHISWKDGLGFCALIHRHRPE K N V W K D 0 0 3 0 0 1 0 0 1 2 0 1 0 1 0 1 0 1 0 1 0 0 12 0 1498.7681 P12814 P12814 163 174 ACTN1 Alpha-actinin-1 yes yes 2;3 0.0030283 107.58 By MS/MS By MS/MS 2 0 4 2 2 19205000 0 7558700 11646000 10599 540 11167 45810;45811;45812;45813 38110;38111;38112;38113 38110 4 0 3403800 2631800 NVNNEVHFFENNNFNTIANK NWCPSWSEDETLCARNVNNEVHFFENNNFN VHFFENNNFNTIANKLHLQKINDFVLSPGP R N V N K L 1 0 8 0 0 0 2 0 1 1 0 1 0 3 0 0 1 0 0 2 0 0 20 0 2378.104 Q9BY44 Q9BY44 145 164 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 3 0.0066048 47.499 By MS/MS 3 0 1 1 4804700 0 4804700 0 10600 1932 11168 45814 38114 38114 1 0 2048200 0 NVNQSLLELHK ESGLNAMECALHLEKNVNQSLLELHKLATD HLEKNVNQSLLELHKLATDKNDPHLCDFIE K N V H K L 0 0 2 0 0 1 1 0 1 0 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1293.7041 P02794 P02794 110 120 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 2 0.00015326 138.98 By MS/MS 7 0 1 1 12165000 0 12165000 0 10601 403 11169 45815 38115 38115 1 0 6985300 0 NVNVQNFHISWK EGLLLWCQRKTAPYKNVNVQNFHISWKDGL PYKNVNVQNFHISWKDGLAFNALIHRHRPE K N V W K D 0 0 3 0 0 1 0 0 1 1 0 1 0 1 0 1 0 1 0 2 0 0 12 0 1484.7524 O43707 O43707 182 193 ACTN4 Alpha-actinin-4 yes yes 2;3 3.2616E-05 150.1 By MS/MS By MS/MS 2.62 1.22 1 4 1 1 1 6 2 95801000 0 49441000 46360000 10602 210 11170 45816;45817;45818;45819;45820;45821;45822;45823 38116;38117;38118;38119;38120 38117 5 0 21783000 10476000 NVPNLHVMK KKDVHMPKHPELADKNVPNLHVMKAMQSLK PELADKNVPNLHVMKAMQSLKSRGYVKEQF K N V M K A 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 0 0 0 0 2 0 0 9 0 1050.5644 P46783;Q9NQ39 P46783 39 47 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like yes no 2 0.024183 79.469 By MS/MS By matching 7 0 2 1 1 102490000 0 61275000 41214000 10603 833 11171 45824;45825 38121 38121 1 0 35184000 7313100 NVPNWHR CAIIMFDVTSRVTYKNVPNWHRDLVRVCEN VTSRVTYKNVPNWHRDLVRVCENIPIVLCG K N V H R D 0 1 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 0 7 0 921.45693 P62826 P62826 100 106 RAN GTP-binding nuclear protein Ran yes yes 2 0.027632 94.669 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 30978000 0 9790700 21187000 10604 1035 11172 45826;45827;45828 38122;38123;38124;38125;38126 38124 5 0 5621900 3672500 NVPQVVNVQELK SQAPAVNTLTESTLKNVPQVVNVQELKNNP TLKNVPQVVNVQELKNNPATPSTAMGSSVP K N V L K N 0 0 2 0 0 2 1 0 0 0 1 1 0 0 1 0 0 0 0 4 0 0 12 0 1365.7616 P35658 P35658 1118 1129 NUP214 Nuclear pore complex protein Nup214 yes yes 2 0.00013091 137.46 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 47984000 0 3143300 44840000 10605 757 11173 45829;45830;45831;45832 38127;38128 38128 2 0 1536400 9339400 NVPYVFVR PLEIILHLPLLCEDKNVPYVFVRSKQALGR PLLCEDKNVPYVFVRSKQALGRACGVSRPV K N V V R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 3 0 0 8 0 992.54435 P55769 P55769 77 84 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 2 0.0053769 99.384 By MS/MS 9 0 1 1 28702000 0 28702000 0 10606 943 11174 45833 38129 38129 1 0 22983000 0 NVQALEIELQSQLALK EQISSYKSEITELRRNVQALEIELQSQLAL VQALEIELQSQLALKQSLEASLAETEGRYC R N V L K Q 2 0 1 0 0 3 2 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 16 0 1796.0044 P13645;CON__P13645 P13645 371 386 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 1.8804E-75 248.91 By MS/MS By MS/MS By MS/MS 4.98 2.67 6 4 5 5 6 5 4 5 3 2 17 9 19 721470000 205310000 35937000 480230000 + 10607 56 11175 45834;45835;45836;45837;45838;45839;45840;45841;45842;45843;45844;45845;45846;45847;45848;45849;45850;45851;45852;45853;45854;45855;45856;45857;45858;45859;45860;45861;45862;45863;45864;45865;45866;45867;45868;45869;45870;45871;45872;45873;45874;45875;45876;45877;45878 38130;38131;38132;38133;38134;38135;38136;38137;38138;38139;38140;38141;38142;38143;38144;38145;38146;38147;38148;38149;38150;38151;38152;38153;38154;38155;38156;38157;38158;38159;38160;38161;38162;38163;38164;38165;38166;38167;38168;38169;38170;38171;38172;38173;38174;38175;38176;38177;38178;38179;38180;38181;38182;38183;38184;38185;38186;38187;38188 38141 58 164830000 16168000 94927000 NVQALEIELQSQLALKQSLEASLAETEGR EQISSYKSEITELRRNVQALEIELQSQLAL LKQSLEASLAETEGRYCVQLSQIQAQISAL R N V G R Y 4 1 1 0 0 4 5 1 0 1 6 1 0 0 0 3 1 0 0 1 0 0 29 1 3167.6674 P13645;CON__P13645 P13645 371 399 KRT10 Keratin, type I cytoskeletal 10 yes no 3 1.3368E-39 152.21 By MS/MS 1.5 0.5 1 1 2 10541000 0 0 10541000 + 10608 56 11176 45879;45880 38189;38190 38190 2 0 0 2321300 NVQDAIADAEQR QRLQGEIAHVKKQCKNVQDAIADAEQRGEH QCKNVQDAIADAEQRGEHALKDARNKLNDL K N V Q R G 3 1 1 2 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 12 0 1328.6321 CON__P35908;CON__P35908v2;P35908 CON__P35908 425 436 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 8.7493E-89 250.75 By MS/MS By MS/MS By MS/MS 5.45 2.89 6 5 5 4 5 6 4 6 6 4 22 9 20 4357200000 2283200000 97311000 1976600000 + 10609 65;66 11177 45881;45882;45883;45884;45885;45886;45887;45888;45889;45890;45891;45892;45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904;45905;45906;45907;45908;45909;45910;45911;45912;45913;45914;45915;45916;45917;45918;45919;45920;45921;45922;45923;45924;45925;45926;45927;45928;45929;45930;45931 38191;38192;38193;38194;38195;38196;38197;38198;38199;38200;38201;38202;38203;38204;38205;38206;38207;38208;38209;38210;38211;38212;38213;38214;38215;38216;38217;38218;38219;38220;38221;38222;38223;38224;38225;38226;38227;38228;38229;38230;38231;38232;38233;38234;38235;38236;38237;38238;38239;38240;38241;38242;38243;38244 38228 53 2092800000 82989000 537450000 NVQDAIADAEQRGEHALK QRLQGEIAHVKKQCKNVQDAIADAEQRGEH DAIADAEQRGEHALKDARNKLNDLEEALQQ K N V L K D 4 1 1 2 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 18 1 1963.9712 CON__P35908;CON__P35908v2;P35908 CON__P35908 425 442 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3;4 1.1014E-113 265.95 By MS/MS By MS/MS By MS/MS 4.34 2.72 8 7 3 5 3 4 4 4 2 1 16 3 22 1012800000 592320000 14264000 406220000 + 10610 65;66 11178 45932;45933;45934;45935;45936;45937;45938;45939;45940;45941;45942;45943;45944;45945;45946;45947;45948;45949;45950;45951;45952;45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965;45966;45967;45968;45969;45970;45971;45972 38245;38246;38247;38248;38249;38250;38251;38252;38253;38254;38255;38256;38257;38258;38259;38260;38261;38262;38263;38264;38265;38266;38267;38268;38269;38270;38271;38272;38273;38274;38275;38276;38277;38278;38279;38280;38281 38266 37 507240000 6795300 77749000 NVQDAIADAEQRGEHALKDAR QRLQGEIAHVKKQCKNVQDAIADAEQRGEH ADAEQRGEHALKDARNKLNDLEEALQQAKE K N V A R N 5 2 1 3 0 2 2 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 21 2 2306.1363 CON__P35908;CON__P35908v2;P35908 CON__P35908 425 445 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4;5 3.2285E-14 137.43 By MS/MS By MS/MS 6.5 2.69 1 1 1 3 2 7 1 126110000 113270000 0 12843000 + 10611 65;66 11179 45973;45974;45975;45976;45977;45978;45979;45980 38282;38283;38284;38285;38286;38287;38288;38289 38284 8 83286000 0 2767100 NVQGIIEILK PHYFWPLLVGRRKEKNVQGIIEILKGMQEL RRKEKNVQGIIEILKGMQELGVHPDQETYT K N V L K G 0 0 1 0 0 1 1 1 0 3 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1125.6758 P42704 P42704 454 463 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.018345 83.948 By matching By MS/MS By MS/MS 2 0 3 1 1 1 10043000 1106700 2696900 6239200 10612 808 11180 45981;45982;45983 38290;38291 38290 2 1333500 1214400 1409900 NVQLQENEIR IIQRLLEVRGSKPGKNVQLQENEIRGLCLK SKPGKNVQLQENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1241.6364 P36873 P36873 27 36 PPP1CC Serine/threonine-protein phosphatase PP1-gamma catalytic subunit yes yes 2 2.5563E-22 189.7 By matching By MS/MS By MS/MS 5.67 0.471 1 2 1 1 1 79650000 1707900 16138000 61805000 10613 763 11181 45984;45985;45986 38292;38293 38293 2 1368300 5586300 9246600 NVQLSLLTER RVEDLVKQYFQTAEKNVQLSLLTERGMGEA QTAEKNVQLSLLTERGMGEAVQEFVDKEEK K N V E R G 0 1 1 0 0 1 1 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 10 0 1171.6561 P49959 P49959 443 452 MRE11A Double-strand break repair protein MRE11A yes yes 2 0.00044539 117.89 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 18875000 0 2946600 15928000 10614 875 11182 45987;45988;45989 38294;38295;38296 38295 3 0 1256100 3028900 NVQLTENEIR IIGRLLEVQGSRPGKNVQLTENEIRGLCLK SRPGKNVQLTENEIRGLCLKSREIFLSQPI K N V I R G 0 1 2 0 0 1 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1214.6255 P62136 P62136 27 36 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2 4.6142E-10 126.24 By MS/MS By MS/MS By MS/MS 5.75 0.433 1 3 1 1 2 34373000 8090100 16701000 9582700 10615 1006 11183 45990;45991;45992;45993 38297;38298;38299;38300 38300 4 10772000 5781200 1336600 NVSDYTPLSLAASGGYVNIIK VVELLLARGANKEHRNVSDYTPLSLAASGG PLSLAASGGYVNIIKILLNAGAEINSRTGS R N V I K I 2 0 2 1 0 0 0 2 0 2 2 1 0 0 1 3 1 0 2 2 0 0 21 0 2181.1317 O75179;Q8IWZ3 O75179 1180 1200 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 yes no 2 2.737E-07 101.62 By MS/MS 2 0.816 1 1 1 3 3409400 0 3409400 0 10616 246 11184 45994;45995;45996 38301 38301 1 0 1557300 0 NVSEELDR DLCEQFNSMEPNKQKNVSEELDRTPPEVSK MEPNKQKNVSEELDRTPPEVSKKLEDIRTR K N V D R T 0 1 1 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 8 0 960.45124 Q15393 Q15393 1192 1199 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0060826 98.523 By MS/MS 2 0 1 1 4131400 0 4131400 0 10617 1361 11185 45997 38302 38302 1 0 1860400 0 NVSEELDRTPPEVSK DLCEQFNSMEPNKQKNVSEELDRTPPEVSK NVSEELDRTPPEVSKKLEDIRTRYAF____ K N V S K K 0 1 1 1 0 0 3 0 0 0 1 1 0 0 2 2 1 0 0 2 0 0 15 1 1698.8424 Q15393 Q15393 1192 1206 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0026789 118.37 By MS/MS 3 1 1 1 2 12336000 0 12336000 0 10618 1361 11186 45998;45999 38303 38303 1 0 4625500 0 NVSGISFTENMGSSQQK GQTIGPRNTFNFGSKNVSGISFTENMGSSQ SGISFTENMGSSQQKNSGFRRSDDMFTFHG K N V Q K N 0 0 2 0 0 2 1 2 0 1 0 1 1 1 0 4 1 0 0 1 0 0 17 0 1812.8312 P49792 P49792 1105 1121 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.0294E-61 237.53 By MS/MS 1 0 1 1 11201000 0 0 11201000 10619 871 11187 46000 38304 38304 1 0 0 2413500 NVSINTVTYEWAPPVQNQALAR KRNVMILTNPVAAKKNVSINTVTYEWAPPV TYEWAPPVQNQALARQYMQMLPKEKQPVAG K N V A R Q 3 1 3 0 0 2 1 0 0 1 1 0 0 0 2 1 2 1 1 3 0 0 22 0 2470.2605 Q9UGI8 Q9UGI8 103 124 TES Testin yes yes 3 0.0021701 53.625 By MS/MS 5 0 1 1 5026700 0 5026700 0 10620 2143 11188 46001 38305 38305 1 0 1295700 0 NVSSFPDDATSPLQENR ELRKAKKDDQMLKRRNVSSFPDDATSPLQE SSFPDDATSPLQENRNNQGTVNWSVDDIVK R N V N R N 1 1 2 2 0 1 1 0 0 0 1 0 0 1 2 3 1 0 0 1 0 0 17 0 1875.8599 P52292 P52292 52 68 KPNA2 Importin subunit alpha-1 yes yes 2 9.52E-14 182.25 By MS/MS 4 0 1 1 17835000 0 0 17835000 10621 903 11189 46002 38306;38307 38306 2 0 0 2913000 NVSTGDVNVEMNAAPGVDLTQLLNNMR AYLKKNHEEEMKDLRNVSTGDVNVEMNAAP AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE R N V M R S 2 1 5 2 0 1 1 2 0 0 3 0 2 0 1 1 2 0 0 4 0 0 27 0 2871.3855 P13645;CON__P13645 P13645 296 322 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 0 411.58 By MS/MS By MS/MS By MS/MS 4.13 2.72 15 10 9 8 8 3 3 6 6 1 22 10 37 1564900000 358480000 162960000 1043400000 + 10622 56 11190;11191;11192 46003;46004;46005;46006;46007;46008;46009;46010;46011;46012;46013;46014;46015;46016;46017;46018;46019;46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030;46031;46032;46033;46034;46035;46036;46037;46038;46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055;46056;46057;46058;46059;46060;46061;46062;46063;46064;46065;46066;46067;46068;46069;46070;46071 38308;38309;38310;38311;38312;38313;38314;38315;38316;38317;38318;38319;38320;38321;38322;38323;38324;38325;38326;38327;38328;38329;38330;38331;38332;38333;38334;38335;38336;38337;38338;38339;38340;38341;38342;38343;38344;38345;38346;38347;38348;38349;38350;38351;38352;38353;38354;38355;38356;38357;38358;38359;38360;38361;38362;38363;38364;38365;38366;38367;38368;38369;38370;38371;38372 38364 42;43 65 290460000 76456000 215130000 NVTDEQEGFAEGFVR HITTTPTPTQFLCPKNVTDEQEGFAEGFVR NVTDEQEGFAEGFVRALAELHSQNTLPSVT K N V V R A 1 1 1 1 0 1 3 2 0 0 0 0 0 2 0 0 1 0 0 2 0 0 15 0 1696.7693 P05412 P05412 102 116 JUN Transcription factor AP-1 yes yes 2 2.6568E-17 186.81 By matching By MS/MS 6 0 2 1 1 7757900 0 1850200 5907700 10623 433 11193 46072;46073 38373 38373 1 0 640480 883860 NVTELNEPLSNEER AEQAERYDDMAAAMKNVTELNEPLSNEERN KNVTELNEPLSNEERNLLSVAYKNVVGARR K N V E R N 0 1 3 0 0 0 4 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 14 0 1642.7798 P61981 P61981 29 42 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 8.6472E-89 253.79 By MS/MS 6.5 0.5 1 1 2 37918000 0 0 37918000 10624 1003 11194 46074;46075 38374;38375 38374 2 0 0 6301600 NVTGILWNLSSSDHLK ELLRTLREQDDELRKNVTGILWNLSSSDHL VTGILWNLSSSDHLKDRLARDTLEQLTDLV K N V L K D 0 0 2 1 0 0 0 1 1 1 3 1 0 0 0 3 1 1 0 1 0 0 16 0 1782.9264 Q9Y446 Q9Y446 422 437 PKP3 Plakophilin-3 yes yes 3 0.047988 36.593 By matching By MS/MS 3.5 0.5 1 1 1 1 6356400 0 1188200 5168200 10625 2282 11195 46076;46077 38376 38376 1 0 506510 844140 NVTKDHIMEIFSTYGK PSPKPTKVHIGRLTRNVTKDHIMEIFSTYG VTKDHIMEIFSTYGKIKMIDMPVERMHPHL R N V G K I 0 0 1 1 0 0 1 1 1 2 0 2 1 1 0 1 2 0 1 1 0 0 16 1 1881.9295 Q15287 Q15287 171 186 RNPS1 RNA-binding protein with serine-rich domain 1 yes yes 3 0.0010105 82.707 By MS/MS 5 0.816 1 1 1 3 14391000 0 14391000 0 10626 1353 11196 46078;46079;46080 38377 38377 1 0 4171100 0 NVTLGVPR QMTLNTFHYAGVSAKNVTLGVPRLKELINI YAGVSAKNVTLGVPRLKELINISKKPKTPS K N V P R L 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 854.4974 P24928 P24928 1116 1123 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.013588 89.369 By matching By MS/MS By MS/MS 1 0 3 1 1 1 19846000 8550300 3649700 7645900 10627 653 11197 46081;46082;46083 38378;38379 38379 2 8550300 1783900 1647400 NVTLPAVFK PLISVYSEKGESSGKNVTLPAVFKAPIRPD GESSGKNVTLPAVFKAPIRPDIVNFVHTNL K N V F K A 1 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 2 0 0 9 0 987.57532 P36578 P36578 21 29 RPL4 60S ribosomal protein L4 yes yes 2 0.035732 75.213 By matching By MS/MS By MS/MS 3.3 1.68 2 2 1 2 2 1 1 4 5 370450000 1955900 222130000 146370000 10628 762 11198 46084;46085;46086;46087;46088;46089;46090;46091;46092;46093 38380;38381;38382;38383;38384;38385;38386 38386 7 1955900 63837000 22828000 NVTMETE FHSQLMRLMVAKEARNVTMETE________ LMVAKEARNVTMETE_______________ R N V T E - 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 2 0 0 1 0 0 7 0 822.34293 P49458 P49458 80 86 SRP9 Signal recognition particle 9 kDa protein yes yes 1 5.6298E-43 190.71 By matching By MS/MS 10 0 2 1 1 14887000 0 1142200 13745000 10629 857 11199 46094;46095 38387 38387 0 0 5778400 30061000 NVTVQPDDPISFMQLTAK LEEEKLSQKKESEKRNVTVQPDDPISFMQL VQPDDPISFMQLTAKNEMNCKEDQFQLSLL R N V A K N 1 0 1 2 0 2 0 0 0 1 1 1 1 1 2 1 2 0 0 2 0 0 18 0 2003.0034 P53618 P53618 662 679 COPB1 Coatomer subunit beta yes yes 2 0.00036282 96.591 By MS/MS 2 0 1 1 6095400 0 0 6095400 10630 921 11200 46096 38388 38388 1 0 0 1377400 NVVHQLSVTLEDLYNGATR FFGGGGRMQRERRGKNVVHQLSVTLEDLYN QLSVTLEDLYNGATRKLALQKNVICDKCEG K N V T R K 1 1 2 1 0 1 1 1 1 0 3 0 0 0 0 1 2 0 1 3 0 0 19 0 2128.0913 P31689 P31689 106 124 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2;3 1.1514E-10 158.98 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 18616000 0 1738200 16878000 10631 720 11201 46097;46098;46099;46100 38389;38390;38391 38390 3 0 448060 2499300 NVVLPTETEVAPAKDVTLLK KDVRWPTETDVSSAKNVVLPTETEVAPAKD TETEVAPAKDVTLLKETERASPIKMDLAPS K N V L K E 2 0 1 1 0 0 2 0 0 0 3 2 0 0 2 0 3 0 0 4 0 0 20 1 2136.2042 P27816 P27816 333 352 MAP4 Microtubule-associated protein 4 yes yes 3 0.029938 37.4 By MS/MS 1.5 0.5 1 1 2 11480000 0 0 11480000 10632 683 11202 46101;46102 38392 38392 1 0 0 2510900 NVVVVDGVR VQTKTKKTLAKPNIRNVVVVDGVRTPFLLS AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP R N V V R T 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5 0 0 9 0 955.54508 P55084 P55084 53 61 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 2 0.0087301 90.37 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 19118000 0 5881900 13236000 10633 938 11203 46103;46104;46105 38393;38394 38393 2 0 1516200 1927000 NVVYPLYR ______________________________ ______________________________ R N V Y R L 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 2 0 0 8 0 1022.5549 Q16540 Q16540 4 11 MRPL23 39S ribosomal protein L23, mitochondrial yes yes 2 0.0072732 97.071 By MS/MS 8 0 1 1 7426100 0 7426100 0 10634 1388 11204 46106 38395 38395 1 0 3378600 0 NWFGLPGR GGSYGGAGQPQLISRNWFGLPGRLDAAMAG QPQLISRNWFGLPGRLDAAMAGHIYVSGSA R N W G R L 0 1 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 1 0 0 0 0 8 0 945.48209 CON__Q3ZBS7 CON__Q3ZBS7 342 349 yes yes 2 0.00019775 139.92 By MS/MS By MS/MS By MS/MS 5.57 2.76 2 1 3 3 3 3 2 1 2 3 8 6 9 815150000 307410000 45526000 462210000 + 10635 88 11205 46107;46108;46109;46110;46111;46112;46113;46114;46115;46116;46117;46118;46119;46120;46121;46122;46123;46124;46125;46126;46127;46128;46129 38396;38397;38398;38399;38400;38401;38402;38403;38404;38405;38406;38407;38408;38409;38410;38411;38412;38413;38414;38415;38416;38417 38415 22 335150000 51891000 159890000 NWLGNEIEVMVSTEEAKR ETQSRGMEGTAARVKNWLGNEIEVMVSTEE GNEIEVMVSTEEAKRHLNDLLEDRKILAQD K N W K R H 1 1 2 0 0 0 4 1 0 1 1 1 1 0 0 1 1 1 0 2 0 0 18 1 2104.0259 O95239;Q2VIQ3 O95239 745 762 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 3 1.1874E-09 151.62 By MS/MS 2 0 1 1 7933000 0 0 7933000 10636 314 11206 46130 38418 38418 1 0 0 1792700 NWNSPVANFIMESQR HFNQEILPVFLNANRNWNSPVANFIMESQR NWNSPVANFIMESQRLELIRLMETQEEDVV R N W Q R L 1 1 3 0 0 1 1 0 0 1 0 0 1 1 1 2 0 1 0 1 0 0 15 0 1791.8363 Q6PI48 Q6PI48 409 423 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 2 1.9899E-05 161.94 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 8428000 0 2383900 6044000 10637 1495 11207 46131;46132;46133 38419;38420 38420 2 0 957210 1172300 NWTIHTWIR YLYKFRHSPNCWYLRNWTIHTWIRQCLKYD NCWYLRNWTIHTWIRQCLKYDAQDKALYTL R N W I R Q 0 1 1 0 0 0 0 0 1 2 0 0 0 0 0 0 2 2 0 0 0 0 9 0 1225.6356 Q92552 Q92552 106 114 MRPS27 28S ribosomal protein S27, mitochondrial yes yes 3 0.0027062 85.676 By MS/MS 5 0 1 1 3980300 0 0 3980300 10638 1707 11208 46134 38421 38421 1 0 0 555180 NWVVVGGLNTHYR DAGKQGKVVQVIRQRNWVVVGGLNTHYRYI QRNWVVVGGLNTHYRYIGKTMDYRGTMIPS R N W Y R Y 0 1 2 0 0 0 0 2 1 0 1 0 0 0 0 0 1 1 1 3 0 0 13 0 1513.779 Q96A35 Q96A35 84 96 MRPL24 39S ribosomal protein L24, mitochondrial yes yes 2 0.00032216 139.43 By MS/MS 7 0 1 1 5171600 0 0 5171600 10639 1747 11209 46135 38422 38422 1 0 0 917670 NYDIGAALDTIQYSK FSDEGGWLTRLLQTKNYDIGAALDTIQYSK NYDIGAALDTIQYSKHPPPL__________ K N Y S K H 2 0 1 2 0 1 0 1 0 2 1 1 0 0 0 1 1 0 2 0 0 0 15 0 1670.8152 Q13501 Q13501 421 435 SQSTM1 Sequestosome-1 yes yes 2 0.00029606 132.59 By MS/MS 4 0 1 1 9403600 0 0 9403600 10640 1253 11210 46136 38423 38423 1 0 0 1535900 NYDPALHPFEVPR NYVRETKLDLQRVPRNYDPALHPFEVPREY PRNYDPALHPFEVPREYIRALNATKLERVF R N Y P R E 1 1 1 1 0 0 1 0 1 0 1 0 0 1 3 0 0 0 1 1 0 0 13 0 1553.7627 Q9NV06 Q9NV06 27 39 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 2;3 0.012434 66.84 By matching By MS/MS 3.6 1.02 1 1 2 1 2 3 45574000 2236800 0 43337000 10641 2062 11211 46137;46138;46139;46140;46141 38424;38425 38425 2 2640900 0 6552000 NYEDEDSLK EINNIIKIVGLQYKKNYEDEDSLKTLRYGK GLQYKKNYEDEDSLKTLRYGKIMIMTDQDQ K N Y L K T 0 0 1 2 0 0 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 9 0 1111.4669 P11388 P11388 521 529 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.010679 88.37 By MS/MS 1 0 1 1 15440000 0 0 15440000 10642 524 11212 46142 38426 38426 1 0 0 3326800 NYEVRPEMLK SLGVIKVISGFVKGRNYEVRPEMLKTFLCL FVKGRNYEVRPEMLKTFLCLRIKEVEVKKD R N Y L K T 0 1 1 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 10 1 1277.6438 Q8WTT2 Q8WTT2 413 422 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.009659 109.79 By matching By MS/MS 1.5 0.5 1 1 1 1 9369700 0 1968600 7401200 10643 1670 11213 46143;46144 38427 38427 1 0 962200 1672500 NYEYLIR LCMLLLIDHLALRARNYEYLIRLFQEWEAH DHLALRARNYEYLIRLFQEWEAHRNLSQLP R N Y I R L 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 969.49198 Q9BQ70 Q9BQ70 395 401 TCF25 Transcription factor 25 yes yes 2 0.012186 108.24 By MS/MS 3 0 1 1 0 0 0 0 10644 1880 11214 46145 38428 38428 1 0 0 0 NYGFVHIEDK LFEQYGKVLECDIIKNYGFVHIEDKTAAED CDIIKNYGFVHIEDKTAAEDAIRNLHHYKL K N Y D K T 0 0 1 1 0 0 1 1 1 1 0 1 0 1 0 0 0 0 1 1 0 0 10 0 1220.5826 Q9BWF3;Q9BQ04 Q9BWF3 36 45 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 2;3 0.025355 79.974 By MS/MS 5.75 0.829 2 1 1 4 36554000 0 0 36554000 10645 1924 11215 46146;46147;46148;46149 38429;38430 38429 2 0 0 5225500 NYGILADATEQVGQHK ______________________________ YGILADATEQVGQHKDAYQVILDGVKGGTK R N Y H K D 2 0 1 1 0 2 1 2 1 1 1 1 0 0 0 0 1 0 1 1 0 0 16 0 1742.8588 Q9BZZ5 Q9BZZ5 10 25 API5 Apoptosis inhibitor 5 yes yes 2;3 4.6287E-36 215.08 By MS/MS By MS/MS 3.6 0.49 2 3 1 4 85709000 0 13620000 72089000 10646 1947 11216 46150;46151;46152;46153;46154 38431;38432;38433;38434 38433 4 0 4520100 13315000 NYILDQTNVYGSAQR QCLNRLIQIAARKKRNYILDQTNVYGSAQR NYILDQTNVYGSAQRRKMRPFEGFQRKAIV R N Y Q R R 1 1 2 1 0 2 0 1 0 1 1 0 0 0 0 1 1 0 2 1 0 0 15 0 1740.8431 Q9BUJ2 Q9BUJ2 501 515 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 2 5.2399E-73 241.54 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 4 3 94093000 0 42521000 51572000 10647 1907 11217 46155;46156;46157;46158;46159;46160;46161 38435;38436;38437;38438;38439;38440 38438 6 0 17867000 10744000 NYIQGINLVQAK EAKPVDKVKLIKEIKNYIQGINLVQAKKLV EIKNYIQGINLVQAKKLVESLPQEIKANVA K N Y A K K 1 0 2 0 0 2 0 1 0 2 1 1 0 0 0 0 0 0 1 1 0 0 12 0 1359.751 P52815 P52815 151 162 MRPL12 39S ribosomal protein L12, mitochondrial yes yes 2 0.00097035 118.5 By matching By MS/MS By MS/MS 6.43 1.4 1 1 1 2 2 2 3 2 195830000 4166900 83926000 107740000 10648 913 11218 46162;46163;46164;46165;46166;46167;46168 38441;38442;38443 38441 3 3293100 42078000 18042000 NYISAWELQR ALLNGEYLLAAQLGKNYISAWELQRKDQLQ AQLGKNYISAWELQRKDQLQQKIMCPGPVT K N Y Q R K 1 1 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 0 10 0 1278.6357 Q9BV38 Q9BV38 60 69 WDR18 WD repeat-containing protein 18 yes yes 2 8.9047E-05 147.19 By MS/MS 5 0 1 1 27133000 0 0 27133000 10649 1910 11219 46169 38444 38444 1 0 0 3784600 NYLEGIYNVPVAAVR VQFRIPMEMTRVDLRNYLEGIYNVPVAAVR NYLEGIYNVPVAAVRTRVQHGSNKRRDHRN R N Y V R T 2 1 2 0 0 0 1 1 0 1 1 0 0 0 1 0 0 0 2 3 0 0 15 0 1676.8886 Q16540 Q16540 55 69 MRPL23 39S ribosomal protein L23, mitochondrial yes yes 2;3 1.5444E-11 178.54 By MS/MS By MS/MS 7.67 0.471 2 4 3 3 35278000 0 16263000 19015000 10650 1388 11220 46170;46171;46172;46173;46174;46175 38445;38446;38447 38447 2 0 7587900 3017400 NYLSLAPLFFK AAVNVICELARRNPKNYLSLAPLFFKLMTS RNPKNYLSLAPLFFKLMTSSTNNWVLIKII K N Y F K L 1 0 1 0 0 0 0 0 0 0 3 1 0 2 1 1 0 0 1 0 0 0 11 0 1311.7227 O14617 O14617 217 227 AP3D1 AP-3 complex subunit delta-1 yes yes 2 0.0095616 92.062 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 26419000 0 6842200 19577000 10651 139 11221 46176;46177;46178;46179;46180;46181;46182 38448;38449;38450;38451 38448 4 0 3070700 3856700 NYNFGGEFVEAMIR KLTIYTTLVGLLNARNYNFGGEFVEAMIRQ RNYNFGGEFVEAMIRQLKESLKANNYNEAV R N Y I R Q 1 1 2 0 0 0 2 2 0 1 0 0 1 2 0 0 0 0 1 1 0 0 14 0 1645.7559 Q09161 Q09161 97 110 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.00042988 122.51 By MS/MS 3 0 1 1 3379200 0 0 3379200 10652 1189 11222 46183 38452 38452 1 0 0 655410 NYPATVHGALLSGLR QPIPRLFFAGEHTIRNYPATVHGALLSGLR NYPATVHGALLSGLREAGRIADQFLGAMYT R N Y L R E 2 1 1 0 0 0 0 2 1 0 3 0 0 0 1 1 1 0 1 1 0 0 15 0 1567.8471 O60341 O60341 806 820 KDM1A Lysine-specific histone demethylase 1A yes yes 2;3 0.0003861 97.911 By MS/MS 2 0 2 2 16339000 0 0 16339000 10653 226 11223 46184;46185 38453;38454 38454 2 0 0 3692300 NYQFDFLRPQHSLFNYFTK NGRQFLTQLMQKEQRNYQFDFLRPQHSLFN DFLRPQHSLFNYFTKLVEQYTKILIPPKGL R N Y T K L 0 1 2 1 0 2 0 0 1 0 2 1 0 4 1 1 1 0 2 0 0 0 19 1 2464.1964 Q15459 Q15459 192 210 SF3A1 Splicing factor 3A subunit 1 yes yes 3;4 0.0010733 66.874 By MS/MS 2.33 0.471 2 1 3 23719000 0 0 23719000 10654 1369 11224 46186;46187;46188 38455;38456 38456 2 0 0 5251300 NYQQNYQNSESGEK RNHYRRYPRRRGPPRNYQQNYQNSESGEKN RNYQQNYQNSESGEKNEGSESAPEGQAQQR R N Y E K N 0 0 3 0 0 3 2 1 0 0 0 1 0 0 0 2 0 0 2 0 0 0 14 0 1687.7074 P67809 P67809 157 170 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 2 6.8969E-148 286.4 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 18007000 0 8925200 9081900 10655 1072 11225 46189;46190;46191 38457;38458 38457 1 0 2300600 1279500 NYQQNYQNSESGEKNEGSESAPEGQAQQR RNHYRRYPRRRGPPRNYQQNYQNSESGEKN NEGSESAPEGQAQQRRPYRRRRFPPYYMRR R N Y Q R R 2 1 4 0 0 6 5 3 0 0 0 1 0 0 1 4 0 0 2 0 0 0 29 1 3256.3889 P67809 P67809 157 185 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 3;4 7.2162E-131 253.44 By MS/MS By MS/MS 4.57 0.904 1 2 3 1 5 2 123810000 0 87828000 35978000 10656 1072 11226 46192;46193;46194;46195;46196;46197;46198 38459;38460;38461;38462;38463;38464;38465;38466 38466 8 0 23750000 5167000 NYSADHYLQEAK DSSKPRRTKLVFDDRNYSADHYLQEAKKLK DDRNYSADHYLQEAKKLKHNADALSDRFEK R N Y A K K 2 0 1 1 0 1 1 0 1 0 1 1 0 0 0 1 0 0 2 0 0 0 12 0 1437.6525 Q9UHB7 Q9UHB7 912 923 AFF4 AF4/FMR2 family member 4 yes yes 2 0.022761 82.914 By MS/MS 2 0 1 1 3506300 0 0 3506300 10657 2151 11227 46199 38467 38467 1 0 0 792360 NYSPYYNTIDDLK IQDWYDKKGPAAIQKNYSPYYNTIDDLKDQ QKNYSPYYNTIDDLKDQIVDLTVGNNKTLL K N Y L K D 0 0 2 2 0 0 0 0 0 1 1 1 0 0 1 1 1 0 3 0 0 0 13 0 1604.7359 P35527;CON__P35527 P35527 200 212 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.00028508 142.72 By MS/MS By MS/MS 5.57 2.95 1 2 2 2 1 2 1 1 2 8 6 123570000 92879000 0 30695000 + 10658 750 11228 46200;46201;46202;46203;46204;46205;46206;46207;46208;46209;46210;46211;46212;46213 38468;38469;38470;38471;38472;38473;38474;38475;38476;38477;38478 38469 10 90387000 0 8259300 NYSPYYNTIDDLKDQIVDLTVGNNK IQDWYDKKGPAAIQKNYSPYYNTIDDLKDQ DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF K N Y N K T 0 0 4 4 0 1 0 1 0 2 2 2 0 0 1 1 2 0 3 2 0 0 25 1 2901.4032 P35527;CON__P35527 P35527 200 224 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3;4 7.872E-286 331.34 By MS/MS By MS/MS By MS/MS 3.81 2.56 4 4 3 5 1 2 2 7 2 12 593380000 74291000 3616600 515480000 + 10659 750 11229 46214;46215;46216;46217;46218;46219;46220;46221;46222;46223;46224;46225;46226;46227;46228;46229;46230;46231;46232;46233;46234 38479;38480;38481;38482;38483;38484;38485;38486;38487;38488;38489;38490;38491;38492;38493;38494;38495;38496;38497;38498;38499;38500;38501 38495 23 59111000 1704100 100490000 NYTQEASLGALQNLTAGSGPMPTSVAQTVVQK IVIRMYLSLIAKSVRNYTQEASLGALQNLT SGPMPTSVAQTVVQKESGLQHTRKMLHVGD R N Y Q K E 4 0 2 0 0 4 1 3 0 0 3 1 1 0 2 3 4 0 1 3 0 0 32 0 3260.6347 Q99959 Q99959 696 727 PKP2 Plakophilin-2 yes yes 3 1.0524E-09 62.706 By MS/MS 3.5 0.5 1 1 2 4769300 0 4769300 0 10660 1870 11230 46235;46236 38502 38502 1 0 1862400 0 NYYEQWGK FIGGLSFETTEESLRNYYEQWGKLTDCVVM TTEESLRNYYEQWGKLTDCVVMRDPASKRS R N Y G K L 0 0 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 1 2 0 0 0 8 0 1086.4771 P22626 P22626 39 46 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 0.0013404 117.16 By matching By MS/MS By MS/MS 4.73 2.89 3 1 2 1 2 2 2 2 1 7 7 1200100000 1698100 488760000 709670000 10661 632 11231 46237;46238;46239;46240;46241;46242;46243;46244;46245;46246;46247;46248;46249;46250;46251 38503;38504;38505;38506;38507;38508;38509;38510;38511;38512;38513;38514;38515;38516;38517 38507 15 1698100 227270000 166400000 NYYGYQGYR SYYYHHPQDRDRYYRNYYGYQGYR______ RDRYYRNYYGYQGYR_______________ R N Y Y R - 0 1 1 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 4 0 0 0 9 0 1182.5094 Q1KMD3 Q1KMD3 739 747 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 0.00073646 132.29 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 35700000 0 24139000 11561000 10662 1404 11232 46252;46253;46254 38518;38519;38520 38520 3 0 10743000 2612600 PAAAAAAATPAVR TQRVANTSTQTMGPRPAAAAAAATPAVRTV PRPAAAAAAATPAVRTVPQYKYAAGVRNPQ R P A V R T 8 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 13 0 1136.6302 P11940 P11940 494 506 PABPC1 Polyadenylate-binding protein 1 yes yes 2 0.00056648 120.09 By MS/MS 3 0 1 1 2656400 0 2656400 0 10663 530 11233 46255 38521 38521 1 0 1132400 0 PAASITSKPATLTTTSATSK STASTTSTTNSTAAKPAASITSKPATLTTT TSKPATLTTTSATSKLIHPDEDISLEERRA K P A S K L 4 0 0 0 0 0 0 0 0 1 1 2 0 0 2 4 6 0 0 0 0 0 20 1 1933.0368 O43670 O43670 343 362 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 yes yes 2;3 7.4307E-28 195.1 By MS/MS By MS/MS 3.6 0.49 2 3 2 3 75165000 0 42528000 32637000 10664 207 11234 46256;46257;46258;46259;46260 38522;38523;38524 38523 3 0 14558000 5572800 PADTEPPPLLVYK WYEADKRRLFPPWIKPADTEPPPLLVYKWC IKPADTEPPPLLVYKWCQGINNLQDVWETS K P A Y K W 1 0 0 1 0 0 1 0 0 0 2 1 0 0 4 0 1 0 1 1 0 0 13 0 1438.7708 Q6P2Q9 Q6P2Q9 942 954 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00033936 128.03 By MS/MS By MS/MS 1 0 2 1 1 9533900 0 3612500 5921400 10665 1490 11235 46261;46262 38525;38526 38525 2 0 1765700 1275900 PAEPPAWAGGAR VAVGKPRAGGDAEPRPAEPPAWAGGARPGP EPRPAEPPAWAGGARPGPGVWDPNWDRREP R P A A R P 4 1 0 0 0 0 1 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 12 0 1178.5833 Q96HS1 Q96HS1 41 52 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0012925 114.89 By MS/MS 6 0 2 2 19491000 0 0 19491000 10666 1796 11236 46263;46264 38527;38528 38527 2 0 0 2916100 PAGPQLFLPDPDPQR AAAEETAVSPRKSPRPAGPQLFLPDPDPQR PAGPQLFLPDPDPQRGGPGPGVRRRCPGES R P A Q R G 1 1 0 2 0 2 0 1 0 0 2 0 0 1 5 0 0 0 0 0 0 0 15 0 1646.8417 Q9BUH6 Q9BUH6 155 169 C9orf142 Protein PAXX yes yes 2 0.00045789 112.36 By matching By MS/MS 7 0 2 1 1 7425600 0 1492000 5933600 10667 1906 11237 46265;46266 38529 38529 1 0 856690 1052900 PAGPVQAVPPPPPVPTEPK ______________________________ VQAVPPPPPVPTEPKQPTEEEASSKEDSAP M P A P K Q 2 0 0 0 0 1 1 1 0 0 0 1 0 0 9 0 1 0 0 3 0 0 19 0 1874.0302 Q15459 Q15459 2 20 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 1.6323E-08 112.51 By MS/MS 2 0 2 2 15319000 0 0 15319000 10668 1369 11238 46267;46268 38530;38531 38531 2 0 0 3461800 PAGVLGAVNKPLSATGR ISEETRVLLLTGKPKPAGVLGAVNKPLSAT GVLGAVNKPLSATGRKPYVRSTGTETGSNI K P A G R K 3 1 1 0 0 0 0 3 0 0 2 1 0 0 2 1 1 0 0 2 0 0 17 1 1606.9155 Q29RF7 Q29RF7 1137 1153 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 3 0.00050993 85.988 By MS/MS 2 0.816 1 1 1 3 23624000 0 0 23624000 10669 1405 11239 46269;46270;46271 38532 38532 1 0 0 5188600 PALDIWPYPSPR KGGIREVPYFNYNAKPALDIWPYPSPRPTF NAKPALDIWPYPSPRPTFGITWRYRLQTVK K P A P R P 1 1 0 1 0 0 0 0 0 1 1 0 0 0 4 1 0 1 1 0 0 0 12 0 1410.7296 Q12830 Q12830 1875 1886 BPTF Nucleosome-remodeling factor subunit BPTF yes yes 2 0.0012132 115.78 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 8815200 0 2085500 6729700 10670 1203 11240 46272;46273;46274 38533;38534 38534 2 0 1019400 1482000 PALEDLR AKATEHLSTLSEKAKPALEDLRQGLLPVLE STLSEKAKPALEDLRQGLLPVLESFKVSFL K P A L R Q 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 7 0 812.43922 P02647 P02647 233 239 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.055398 76.035 By MS/MS 9.5 0.5 1 1 2 16921000 16921000 0 0 10671 389 11241 46275;46276 38535 38535 1 14693000 0 0 PANKQEDEVMR IPGEPGFPLNAIYAKPANKQEDEVMRAYLQ IYAKPANKQEDEVMRAYLQQLRQETGLRLC K P A M R A 1 1 1 1 0 1 2 0 0 0 0 1 1 0 1 0 0 0 0 1 0 0 11 1 1315.619 O15145 O15145 120 130 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 3 0.0017925 95.483 By MS/MS By MS/MS 7 0 2 1 1 4190600 0 1150100 3040500 10672 170 11242 46277;46278 38536;38537 38537 2 0 660400 539510 PAPAVGEAEDKENQQATSGPNQPSVR TYRPRYRSRGPPRPRPAPAVGEAEDKENQQ ENQQATSGPNQPSVRRGYRRPYNYRRRPRP R P A V R R 4 1 2 1 0 3 3 2 0 0 0 1 0 0 4 2 1 0 0 2 0 0 26 1 2676.2739 P16989 P16989 301 326 YBX3 Y-box-binding protein 3 yes yes 3;4 3.9631E-34 173.89 By MS/MS By MS/MS 3.82 1.27 1 1 1 4 4 7 4 173280000 0 66596000 106680000 10673 581 11243 46279;46280;46281;46282;46283;46284;46285;46286;46287;46288;46289 38538;38539;38540;38541;38542;38543;38544;38545;38546 38539 9 0 21150000 16477000 PAPGTLGTGLGAGFGTALGAGQASLFGNNQPK GFGTNTSGNSIFGSKPAPGTLGTGLGAGFG LGAGQASLFGNNQPKIGGPLGTGAFGAPGF K P A P K I 5 0 2 0 0 2 0 9 0 0 4 1 0 2 3 1 3 0 0 0 0 0 32 0 2926.4937 P52948 P52948 424 455 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 3.8144E-41 123.33 By MS/MS 3 0.816 1 1 1 3 20123000 0 0 20123000 10674 916 11244 46290;46291;46292 38547;38548 38548 2 0 0 4189200 PAPPQEESPSSEAK LPLEPESPSGQVGPRPAPPQEESPSSEAKS RPAPPQEESPSSEAKSRGPTPPAMGPRDAR R P A A K S 2 0 0 0 0 1 3 0 0 0 0 1 0 0 4 3 0 0 0 0 0 0 14 0 1452.6733 Q3KQU3 Q3KQU3 79 92 MAP7D1 MAP7 domain-containing protein 1 yes yes 2 0.050144 64.439 By MS/MS 2 0 1 1 923070 0 923070 0 10675 1411 11245 46293 38549 38549 1 0 415670 0 PAPVAVAAAATAAAYGGYPTAHTATDYGYTQR TAAYAPAAATVAVARPAPVAVAAAATAAAY YPTAHTATDYGYTQRQQEAPPPPPPATTQN R P A Q R Q 11 1 0 1 0 1 0 3 1 0 0 0 0 0 3 0 5 0 4 2 0 0 32 0 3153.5156 Q96KR1 Q96KR1 92 123 ZFR Zinc finger RNA-binding protein yes yes 4 1.0232E-25 102.5 By MS/MS 2 0 1 1 5639600 0 5639600 0 10676 1806 11246 46294 38550 38550 1 0 2539600 0 PASGPIRPIVR RRKARQAKARRIAPRPASGPIRPIVRCPTV IAPRPASGPIRPIVRCPTVRYHTKVRAGRG R P A V R C 1 2 0 0 0 0 0 1 0 2 0 0 0 0 3 1 0 0 0 1 0 0 11 1 1161.6982 P26373 P26373 50 60 RPL13 60S ribosomal protein L13 yes yes 2 4.0621E-06 155.42 By matching By MS/MS 6.33 0.471 2 1 1 2 309150000 0 3404300 305750000 10677 669 11247 46295;46296;46297 38551;38552 38552 2 0 1178400 51616000 PASPATETVPAFSER KLIGKKVNVTVDYIRPASPATETVPAFSER PASPATETVPAFSERTCATVTIGGINIAEA R P A E R T 3 1 0 0 0 0 2 0 0 0 0 0 0 1 3 2 2 0 0 1 0 0 15 0 1558.7627 Q7KZF4 Q7KZF4 424 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 2.0327E-17 188.96 By MS/MS By MS/MS 2 0 2 1 1 10556000 0 2929600 7626600 10678 1518 11248 46298;46299 38553;38554 38554 2 0 1319300 1723500 PATLLWLIQK SDGEEKEEVKEELGRPATLLWLIQKLSRIA EELGRPATLLWLIQKLSRIAKLEAAYSPRN R P A Q K L 1 0 0 0 0 1 0 0 0 1 3 1 0 0 1 0 1 1 0 0 0 0 10 0 1181.7172 O75691 O75691 2616 2625 UTP20 Small subunit processome component 20 homolog yes yes 2 0.0004418 136.8 By MS/MS 1 0 1 1 2097900 0 0 2097900 10679 280 11249 46300 38555 38555 1 0 0 452020 PATPEIQEIVDK ______________________________ EAKPATPEIQEIVDKVKPQLEEKTNETYGK K P A D K V 1 0 0 1 0 1 2 0 0 2 0 1 0 0 2 0 1 0 0 1 0 0 12 0 1338.7031 P01040 P01040 11 22 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2 4.2087E-10 169.65 By MS/MS By MS/MS 6.08 3 1 2 1 1 2 1 1 2 2 7 6 133290000 94419000 0 38875000 10680 374 11250 46301;46302;46303;46304;46305;46306;46307;46308;46309;46310;46311;46312;46313 38556;38557;38558;38559;38560;38561;38562;38563;38564;38565 38559 10 80149000 0 21856000 PAVPTVASSTDMLHSK TKQDDRPPLTSLLSKPAVPTVASSTDMLHS AVPTVASSTDMLHSKLSQLRESREQHQHSD K P A S K L 2 0 0 1 0 0 0 0 1 0 1 1 1 0 2 3 2 0 0 2 0 0 16 0 1639.824 Q14008 Q14008 1966 1981 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 6.359E-06 126.16 By MS/MS By MS/MS 1 0 2 1 1 62777000 0 8665600 54112000 10681 1279 11251 46314;46315 38566;38567 38567 1 0 4235600 11659000 PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK DSSKGEDSAEETEAKPAVVAPAPVVEAVST FPSDATAEQGPILTKHGKNPVMELNEKRRG K P A T K H 8 0 0 1 0 1 2 1 0 1 1 1 0 1 6 3 3 0 0 5 0 0 34 0 3287.7289 Q12906 Q12906 490 523 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 3.4024E-33 110.4 By MS/MS 2.5 0.5 1 1 2 5509900 0 5509900 0 10682 1211 11252 46316;46317 38568;38569 38569 2 0 2422000 0 PAYHSSLMDPDTK ______________________________ ______________________________ M P A T K L 1 0 0 2 0 0 0 0 1 0 1 1 1 0 2 2 1 0 1 0 0 0 13 0 1460.6606 O15145 O15145 2 14 ARPC3 Actin-related protein 2/3 complex subunit 3 yes yes 3 0.0033155 79.744 By matching By MS/MS 7 0 2 1 1 15038000 0 4597400 10441000 10683 170 11253 46318;46319 38570 38570 1 0 2639800 1852700 PDITHQSLLMLMDSPLNR KSILLKNGRDPGEARPDITHQSLLMLMDSP THQSLLMLMDSPLNRAGLLQVYIHTQKNVL R P D N R A 0 1 1 2 0 1 0 0 1 1 4 0 2 0 2 2 1 0 0 0 0 0 18 0 2080.0445 Q92979 Q92979 85 102 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 3 5.5013E-06 101.67 By MS/MS 7 0 1 1 3916800 0 0 3916800 10684 1736 11254 46320 38571 38571 1 0 0 695010 PEFLEDPSVLTK ______________________________ ______________________________ M P E T K D 0 0 0 1 0 0 2 0 0 0 2 1 0 1 2 1 1 0 0 1 0 0 12 0 1373.7078 P42166;P42167 P42166 2 13 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2 6.0448E-08 166.69 By MS/MS 3.5 1.71 1 1 1 1 1 1 6 142420000 0 0 142420000 10685 798;799 11255 46321;46322;46323;46324;46325;46326 38572;38573;38574;38575 38573 4 0 0 24715000 PESKPESQIPPQRPQR GIPPHVVKVPASQPRPESKPESQIPPQRPQ ESKPESQIPPQRPQRDQRVREQRINIPPQR R P E Q R D 0 2 0 0 0 3 2 0 0 1 0 1 0 0 5 2 0 0 0 0 0 0 16 2 1872.9806 Q13283 Q13283 284 299 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 4 0.043361 36.638 By MS/MS 4 0 1 1 1173400 0 0 1173400 10686 1236 11256 46327 38576 38576 0 0 0 191650 PFDAFTDLK GTSESPAEEETCSGKPFDAFTDLKNGSLFA ETCSGKPFDAFTDLKNGSLFAFRGLYCYEL K P F L K N 1 0 0 2 0 0 0 0 0 0 1 1 0 2 1 0 1 0 0 0 0 0 9 0 1052.5179 CON__Q3ZBS7 CON__Q3ZBS7 156 164 no no 2 0.00078339 112.41 By matching By MS/MS 4.75 0.829 2 1 1 1 3 17072000 3796300 0 13276000 + 10687 88 11257 46328;46329;46330;46331 38577 38577 1 2961800 0 2072600 PFGSEEQLLPVEK RKGYEEVHVPALKPKPFGSEEQLLPVEKLP PKPFGSEEQLLPVEKLPKYAQAGFEGFKTL K P F E K L 0 0 0 0 0 1 3 1 0 0 2 1 0 1 2 1 0 0 0 1 0 0 13 0 1471.7559 O75643 O75643 454 466 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 5.7624E-34 211.46 By MS/MS By MS/MS 1 0 2 1 1 39832000 0 12334000 27497000 10688 277 11258 46332;46333 38578;38579 38578 2 0 6028800 5924700 PFLNGLTGKPVMVK ______________________________ KPFLNGLTGKPVMVKLKWGMEYKGYLVSVD K P F V K L 0 0 1 0 0 0 0 2 0 0 2 2 1 1 2 0 1 0 0 2 0 0 14 1 1499.8534 P62306 P62306 9 22 SNRPF Small nuclear ribonucleoprotein F yes yes 3 0.0068773 68.277 By matching By MS/MS 10 0 2 1 1 15069000 731370 0 14337000 10689 1019 11259 46334;46335 38580 38580 487 1 1332400 0 31357000 PFLWLAR QYYDISAKSNYNFEKPFLWLARKLIGDPNL KSNYNFEKPFLWLARKLIGDPNLEFVAMPA K P F A R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 1 0 0 0 0 7 0 901.51741 P62826 P62826 160 166 RAN GTP-binding nuclear protein Ran yes yes 2 0.014171 113.07 By matching By MS/MS 6.67 0.471 1 2 1 2 10567000 0 472340 10094000 10690 1035 11260 46336;46337;46338 38581;38582 38581 2 0 271220 1730400 PFSQFWQPLLR KSHKNVDLNDVLVPKPFSQFWQPLLRGLHS LVPKPFSQFWQPLLRGLHSQNFTQALLERM K P F L R G 0 1 0 0 0 2 0 0 0 0 2 0 0 2 2 1 0 1 0 0 0 0 11 0 1417.7507 Q9Y4W2 Q9Y4W2 377 387 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.0013398 110.87 By MS/MS 3 0 1 1 1123000 0 1123000 0 10691 2289 11261 46339 38583 38583 1 0 478720 0 PFSVDFFR YKKARAVFKSLQESRPFSVDFFRKMIQFEK KSLQESRPFSVDFFRKMIQFEKEQESCNMA R P F F R K 0 1 0 1 0 0 0 0 0 0 0 0 0 3 1 1 0 0 0 1 0 0 8 0 1013.4971 Q9NYH9 Q9NYH9 505 512 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 2 8.0495E-05 148.33 By MS/MS 3 0 1 1 3594200 0 0 3594200 10692 2098 11262 46340 38584 38584 1 0 0 697100 PFTLGQLK RGKISNIVHISNLVRPFTLGQLKELLGRTG HISNLVRPFTLGQLKELLGRTGTLVEEAFW R P F L K E 0 0 0 0 0 1 0 1 0 0 2 1 0 1 1 0 1 0 0 0 0 0 8 0 902.52255 Q9UKV3 Q9UKV3 1022 1029 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.010876 92.677 By MS/MS 2.5 1.12 1 1 1 1 4 11693000 0 0 11693000 10693 2184 11263 46341;46342;46343;46344 38585;38586 38585 2 0 0 2373200 PFVPNVHAAEFVPSFLR PLSSAFSRKLNVNAKPFVPNVHAAEFVPSF VPNVHAAEFVPSFLRGPTQPPTLPAGSGSN K P F L R G 2 1 1 0 0 0 1 0 1 0 1 0 0 3 3 1 0 0 0 3 0 0 17 0 1926.0152 Q8IYD1 Q8IYD1 58 74 GSPT2 Eukaryotic peptide chain release factor GTP-binding subunit ERF3B yes yes 3 8.8577E-06 103.13 By MS/MS By MS/MS 3 0 2 1 1 15068000 0 3043500 12024000 10694 1593 11264 46345;46346 38587;38588 38588 2 0 1297400 2332200 PGFSIADK SIGIYGLDFYVVLGRPGFSIADKKRRTGCI FYVVLGRPGFSIADKKRRTGCIGAKHRISK R P G D K K 1 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 0 0 8 0 833.42832 P62913 P62913 137 144 RPL11 60S ribosomal protein L11 yes yes 2 0.0011947 119.17 By MS/MS By MS/MS 7.75 0.829 2 1 1 1 3 138890000 0 24619000 114280000 10695 1051 11265 46347;46348;46349;46350 38589;38590 38590 2 0 14136000 20998000 PGGGPGLSTPGGHPKPPHR GPGGPKGGKMPGGPKPGGGPGLSTPGGHPK PGLSTPGGHPKPPHRGGGEPRGGRQHHPPY K P G H R G 0 1 0 0 0 0 0 6 2 0 1 1 0 0 6 1 1 0 0 0 0 0 19 1 1801.9336 P23246 P23246 218 236 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3;4 0.00010519 85.469 By MS/MS By MS/MS 2.25 1.09 4 3 3 2 4 8 350830000 0 37119000 313710000 10696 638 11266 46351;46352;46353;46354;46355;46356;46357;46358;46359;46360;46361;46362 38591;38592;38593;38594;38595;38596;38597;38598;38599;38600;38601;38602;38603;38604;38605 38592 15 0 16554000 67014000 PGGLLLGDVAPNFEANTTVGR ______________________________ GDVAPNFEANTTVGRIRFHDFLGDSWGILF M P G G R I 2 1 2 1 0 0 1 4 0 0 3 0 0 1 2 0 2 0 0 2 0 0 21 0 2097.0855 P30041 P30041 2 22 PRDX6 Peroxiredoxin-6 yes yes 2 1.2689E-36 203.85 By MS/MS 6.5 0.5 1 1 2 15043000 0 0 15043000 10697 705 11267 46363;46364 38606 38606 1 0 0 2516900 PGGYGYGYGR GGDQGYGSGRYYDSRPGGYGYGYGRSRDYN YYDSRPGGYGYGYGRSRDYNGRNQGGYDRY R P G G R S 0 1 0 0 0 0 0 5 0 0 0 0 0 0 1 0 0 0 3 0 0 0 10 0 1045.4617 P98179 P98179 122 131 RBM3 RNA-binding protein 3 yes yes 2 0.0003682 125.25 By MS/MS 8 0.816 1 1 1 3 11520000 0 11520000 0 10698 1118 11268 46365;46366;46367 38607 38607 1 0 5887600 0 PGHLQEGFGCVVTNR ______________________________ PGHLQEGFGCVVTNRFDQLFDDESDPFEVL M P G N R F 0 1 1 0 1 1 1 3 1 0 1 0 0 1 1 0 1 0 0 2 0 0 15 0 1669.7995 Q8NC51 Q8NC51 2 16 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2;3 5.892E-12 182.71 By MS/MS 4.33 0.471 2 1 3 24724000 0 0 24724000 10699 1630 11269 46368;46369;46370 38608;38609 38608 2 0 0 3921100 PGLEGYALPR QCRSCRNTLTNIAMRPGLEGYALPRKCNTD NIAMRPGLEGYALPRKCNTDQAGRPKCPLD R P G P R K 1 1 0 0 0 0 1 2 0 0 2 0 0 0 2 0 0 0 1 0 0 0 10 0 1071.5713 P33992 P33992 186 195 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.0027861 104.44 By MS/MS By MS/MS 6 3 1 1 1 1 5752700 0 1243700 4509000 10700 732 11270 46371;46372 38610;38611 38611 2 0 995880 874530 PGLGGSSGLAGAWLK VKEWLLAHEGHRLGKPGLGGSSGLAGAWLK PGLGGSSGLAGAWLKGAGATSGSPPAGRN_ K P G L K G 2 0 0 0 0 0 0 5 0 0 3 1 0 0 1 2 0 1 0 0 0 0 15 0 1369.7354 P16455 P16455 179 193 MGMT Methylated-DNA--protein-cysteine methyltransferase yes yes 2 5.4243E-12 182.92 By matching By MS/MS 7 0 2 1 1 11931000 0 904720 11027000 10701 579 11271 46373;46374 38612 38612 1 0 519500 1956600 PGLQTHGFIIR IESKLPVITCYADAKPGLQTHGFIIRVKDY ADAKPGLQTHGFIIRVKDYGCIVKFYNNVQ K P G I R V 0 1 0 0 0 1 0 2 1 2 1 0 0 1 1 0 1 0 0 0 0 0 11 0 1237.6931 Q14690 Q14690 541 551 PDCD11 Protein RRP5 homolog yes yes 2;3 0.00024615 110.84 By MS/MS 1 0 2 2 8584600 0 0 8584600 10702 1314 11272 46375;46376 38613;38614 38613 2 0 0 1849700 PGPGLSSQTAGAAGWR AGFLKTVGLFAGRGRPGPGLSSQTAGAAGW GPGLSSQTAGAAGWRRSGSNGGGQAPGASP R P G W R R 3 1 0 0 0 1 0 4 0 0 1 0 0 0 2 2 1 1 0 0 0 0 16 0 1511.7481 P38432 P38432 353 368 COIL Coilin yes yes 2 3.24E-150 286.95 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 40650000 0 6581900 34068000 10703 772 11273 46377;46378;46379;46380 38615;38616 38616 2 0 2805900 6090000 PGPGVWDPNWDR EPRPAEPPAWAGGARPGPGVWDPNWDRREP GARPGPGVWDPNWDRREPLSLINVRKRNVE R P G D R R 0 1 1 2 0 0 0 2 0 0 0 0 0 0 3 0 0 2 0 1 0 0 12 0 1394.6367 Q96HS1 Q96HS1 53 64 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.00015062 135.86 By MS/MS 6 0 1 1 21804000 0 0 21804000 10704 1796 11274 46381 38617 38617 1 0 0 3262100 PGPGVWDPNWDRR EPRPAEPPAWAGGARPGPGVWDPNWDRREP ARPGPGVWDPNWDRREPLSLINVRKRNVES R P G R R E 0 2 1 2 0 0 0 2 0 0 0 0 0 0 3 0 0 2 0 1 0 0 13 1 1550.7379 Q96HS1 Q96HS1 53 65 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0055315 105.52 By MS/MS 6 0 1 1 5867400 0 0 5867400 10705 1796 11275 46382 38618 38618 1 0 0 877830 PGPPTTANHLGLSVPGLVSVPPR SAGPMPSAGPVPSARPGPPTTANHLGLSVP HLGLSVPGLVSVPPRLLPGPENHRAGSNED R P G P R L 1 1 1 0 0 0 0 3 1 0 3 0 0 0 6 2 2 0 0 3 0 0 23 0 2262.2485 Q8IZL8 Q8IZL8 700 722 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 1.4296E-09 90.912 By MS/MS By matching 2.5 0.5 1 1 1 1 5857500 0 4033700 1823800 10706 1596 11276 46383;46384 38619 38619 1 0 1816400 353720 PGPSGMNVVQVAELYPELR QAAAAGAEPMEPESRPGPSGMNVVQVAELY GMNVVQVAELYPELRRILTITEDGQGLKGV R P G L R R 1 1 1 0 0 1 2 2 0 0 2 0 1 0 3 1 0 0 1 3 0 0 19 0 2055.0459 P03243 P03243 70 88 yes yes 2;3 2.1007E-261 327.7 By MS/MS By MS/MS By MS/MS 3.81 2.2 10 8 7 8 7 4 5 2 1 3 21 28 1577300000 6014900 257340000 1313900000 10707 406 11277;11278 46385;46386;46387;46388;46389;46390;46391;46392;46393;46394;46395;46396;46397;46398;46399;46400;46401;46402;46403;46404;46405;46406;46407;46408;46409;46410;46411;46412;46413;46414;46415;46416;46417;46418;46419;46420;46421;46422;46423;46424;46425;46426;46427;46428;46429;46430;46431;46432;46433;46434;46435;46436 38620;38621;38622;38623;38624;38625;38626;38627;38628;38629;38630;38631;38632;38633;38634;38635;38636;38637;38638;38639;38640;38641;38642;38643;38644;38645;38646;38647;38648;38649;38650;38651;38652;38653;38654;38655;38656;38657;38658;38659;38660;38661;38662;38663;38664;38665;38666;38667;38668;38669;38670 38622 134 51 6541400 89124000 243890000 PGPSGMNVVQVAELYPELRR QAAAAGAEPMEPESRPGPSGMNVVQVAELY MNVVQVAELYPELRRILTITEDGQGLKGVK R P G R R I 1 2 1 0 0 1 2 2 0 0 2 0 1 0 3 1 0 0 1 3 0 0 20 1 2211.147 P03243 P03243 70 89 yes yes 2;3 4.8723E-70 230.86 By MS/MS By MS/MS 3.5 2.22 4 1 1 1 3 2 7 5 259410000 0 172730000 86680000 10708 406 11279;11280 46437;46438;46439;46440;46441;46442;46443;46444;46445;46446;46447;46448 38671;38672;38673;38674;38675;38676;38677;38678;38679;38680;38681;38682 38680 134 12 0 55476000 18247000 PGPTPSGTNVGSSGR ______________________________ PGPTPSGTNVGSSGRSPSKAVAARAAGSTV M P G G R S 0 1 1 0 0 0 0 4 0 0 0 0 0 0 3 3 2 0 0 1 0 0 15 0 1369.6586 P60468 P60468 2 16 SEC61B Protein transport protein Sec61 subunit beta yes yes 2 0.026357 66.262 By MS/MS 9 0 1 1 803250 0 0 803250 10709 964 11281 46449 38683 38683 1 0 0 256590 PGQFIHTNWTGHGGTVSSSSYNA QRDYFGAHTYELLAKPGQFIHTNWTGHGGT WTGHGGTVSSSSYNA_______________ K P G N A - 1 0 2 0 0 1 0 4 2 1 0 0 0 1 1 4 3 1 1 1 0 0 23 0 2404.0832 P52209 P52209 461 483 PGD 6-phosphogluconate dehydrogenase, decarboxylating yes yes 3 1.6457E-22 162.32 By MS/MS By matching 4.67 0.471 1 2 2 1 29548000 27893000 1655300 0 10710 901 11282 46450;46451;46452 38684;38685 38685 2 22026000 426680 0 PGTALELLEAQAATGFIVDPVSNLR QKLGIYEAMKIGLVRPGTALELLEAQAATG QAATGFIVDPVSNLRLPVEEAYKRGLVGIE R P G L R L 4 1 1 1 0 1 2 2 0 1 4 0 0 1 2 1 2 0 0 2 0 0 25 0 2581.3752 P15924 P15924 2285 2309 DSP Desmoplakin yes yes 3 6.8613E-20 115.36 By MS/MS 1 0 1 1 1990900 0 0 1990900 10711 572 11283 46453 38686 38686 1 0 0 428970 PGTTGSGAGSGGPGGLTSAAPAGGDKK AAPPAAPALSAADTKPGTTGSGAGSGGPGG PGGLTSAAPAGGDKKVIATKVLGTVKWFNV K P G K K V 4 0 0 1 0 0 0 10 0 0 1 2 0 0 3 3 3 0 0 0 0 0 27 1 2212.072 P67809 P67809 27 53 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 3 5.4166E-15 95.319 By MS/MS By MS/MS 5 0 2 1 1 12024000 0 5806500 6217600 10712 1072 11284 46454;46455 38687;38688 38688 2 0 1496700 867240 PGVTVKDVNQQEFVR ______________________________ PGVTVKDVNQQEFVRALAAFLKKSGKLKVP M P G V R A 0 1 1 1 0 2 1 1 0 0 0 1 0 1 1 0 1 0 0 4 0 0 15 1 1714.9002 P39019 P39019 2 16 RPS19 40S ribosomal protein S19 yes yes 3 3.4016E-18 190.86 By MS/MS 8 0 1 1 6698000 0 6698000 0 10713 777 11285 46456 38689 38689 1 0 3047400 0 PHAFKPGDLVFAK ______________________________ ______________________________ M P H A K M 2 0 0 1 0 0 0 1 1 0 1 2 0 2 2 0 0 0 0 1 0 0 13 1 1425.7769 Q7Z4V5 Q7Z4V5 2 14 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 2;3 0.0025921 141.08 By MS/MS 2 0.816 2 2 2 6 54419000 0 0 54419000 10714 1533 11286 46457;46458;46459;46460;46461;46462 38690;38691 38691 2 0 0 11893000 PHSVSLNDTETR AVPLNASKQDGPMPKPHSVSLNDTETRKLM MPKPHSVSLNDTETRKLMEECKRLQGEMMK K P H T R K 0 1 1 1 0 0 1 0 1 0 1 0 0 0 1 2 2 0 0 1 0 0 12 0 1354.6477 Q9P0L0 Q9P0L0 162 173 VAPA Vesicle-associated membrane protein-associated protein A yes yes 2;3 1.105E-13 185.14 By matching By MS/MS 6.25 0.433 3 1 1 3 26708000 0 1144100 25564000 10715 2116 11287 46463;46464;46465;46466 38692;38693 38693 2 0 396040 3901800 PIFGGTVYHSPVSR NTTTMSNATANSSIRPIFGGTVYHSPVSRL RPIFGGTVYHSPVSRLPPSGSKPVAASTCS R P I S R L 0 1 0 0 0 0 0 2 1 1 0 0 0 1 2 2 1 0 1 2 0 0 14 0 1515.7834 O43663 O43663 504 517 PRC1 Protein regulator of cytokinesis 1 yes yes 3 0.00074427 91.307 By MS/MS 3 0 1 1 13036000 0 0 13036000 10716 206 11288 46467 38694 38694 1 0 0 2528400 PIFGLTSNYK SNKDMAGKLINEWSRPIFGLTSNYKGMTRE NEWSRPIFGLTSNYKGMTREEREQRDLEQM R P I Y K G 0 0 1 0 0 0 0 1 0 1 1 1 0 1 1 1 1 0 1 0 0 0 10 0 1138.6023 Q96ST2 Q96ST2 688 697 IWS1 Protein IWS1 homolog yes yes 2 0.036878 76.221 By matching By MS/MS 3.2 1.17 2 1 1 1 1 4 13253000 949420 0 12304000 10717 1835 11289 46468;46469;46470;46471;46472 38695 38695 1 1143900 0 2425300 PIILDPADPTGNLGHNAR KTVGDFLKQQLQKPRPIILDPADPTGNLGH LDPADPTGNLGHNARWDLLAKEAAACTSAL R P I A R W 2 1 2 2 0 0 0 2 1 2 2 0 0 0 3 0 1 0 0 0 0 0 18 0 1869.9697 Q9Y6K5 Q9Y6K5 1036 1053 OAS3 2-5-oligoadenylate synthase 3 yes yes 3 3.9371E-06 104.21 By MS/MS 2.5 0.5 1 1 2 16669000 0 0 16669000 10718 2314 11290 46473;46474 38696 38696 1 0 0 3662300 PINLEPIFQGYIDSLK QTKWELLQQMNVGTRPINLEPIFQGYIDSL INLEPIFQGYIDSLKRYLDGLTAERTSQNS R P I L K R 0 0 1 1 0 1 1 1 0 3 2 1 0 1 2 1 0 0 1 0 0 0 16 0 1845.9877 CON__P35908;CON__P35908v2;P35908 CON__P35908 228 243 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 3.5145E-05 124.86 By MS/MS By matching By MS/MS 4.31 2.4 2 1 2 3 2 1 1 1 6 1 6 51973000 11638000 191980 40142000 + 10719 65;66 11291 46475;46476;46477;46478;46479;46480;46481;46482;46483;46484;46485;46486;46487 38697;38698;38699;38700;38701;38702;38703;38704;38705;38706;38707 38697 10 9133000 93836 7192100 PINLEPIFQGYIDSLKR QTKWELLQQMNVGTRPINLEPIFQGYIDSL NLEPIFQGYIDSLKRYLDGLTAERTSQNSE R P I K R Y 0 1 1 1 0 1 1 1 0 3 2 1 0 1 2 1 0 0 1 0 0 0 17 1 2002.0888 CON__P35908;CON__P35908v2;P35908 CON__P35908 228 244 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 2.9477E-20 190.19 By MS/MS By MS/MS 5.67 2.72 1 1 1 2 1 1 3 2 5 7 102650000 31923000 0 70730000 + 10720 65;66 11292 46488;46489;46490;46491;46492;46493;46494;46495;46496;46497;46498;46499 38708;38709;38710;38711;38712;38713;38714;38715;38716;38717;38718;38719;38720;38721;38722;38723 38718 16 25509000 0 13238000 PIPQWIR FKIKQFLAKKQKQNRPIPQWIRMKTGNKIR AKKQKQNRPIPQWIRMKTGNKIRYNSKRRH R P I I R M 0 1 0 0 0 1 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 7 0 908.52322 Q59GN2;P62891 Q59GN2 22 28 RPL39P5;RPL39 Putative 60S ribosomal protein L39-like 5;60S ribosomal protein L39 yes no 2 0.013315 114.67 By matching By MS/MS 9.33 0.471 2 1 1 2 14540000 0 989370 13550000 10721 1047 11293 46500;46501;46502 38724;38725 38725 2 0 792240 17336000 PISIPTNLVSLFSR ATRELLRIPQAALAKPISIPTNLVSLFSRY KPISIPTNLVSLFSRYVDRQKLNLLETKLQ K P I S R Y 0 1 1 0 0 0 0 0 0 2 2 0 0 1 2 3 1 0 0 1 0 0 14 0 1542.877 Q86TB9 Q86TB9 736 749 PATL1 Protein PAT1 homolog 1 yes yes 2 0.0041961 90.614 By MS/MS 4 0.816 1 1 1 3 4463800 0 4463800 0 10722 1540 11294 46503;46504;46505 38726;38727;38728 38726 3 0 1565500 0 PKPPSATSIPAILK SEEQLIDIKVAHPIRPKPPSATSIPAILKA RPKPPSATSIPAILKALQDEWDAVMLHSFT R P K L K A 2 0 0 0 0 0 0 0 0 2 1 2 0 0 4 2 1 0 0 0 0 0 14 1 1418.8497 Q9UMS4 Q9UMS4 63 76 PRPF19 Pre-mRNA-processing factor 19 yes yes 3 0.039482 49.216 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 42691000 0 15301000 27389000 10723 2199 11295 46506;46507;46508 38729;38730 38729 2 0 5078000 4564800 PLEALNGGFNLSR PKRCFLVRPGDQQPRPLEALNGGFNLSRIL PRPLEALNGGFNLSRILRTALPAWHKSIVS R P L S R I 1 1 2 0 0 0 1 2 0 0 3 0 0 1 1 1 0 0 0 0 0 0 13 0 1386.7256 Q96RR1 Q96RR1 342 354 PEO1 Twinkle protein, mitochondrial yes yes 2 0.0059367 97.813 By MS/MS By matching 5.5 1.66 1 1 2 3 1 33427000 0 19666000 13761000 10724 1830 11296 46509;46510;46511;46512 38731 38731 1 0 6125700 2441800 PLELSDFR ISASCRRPIKGAAGRPLELSDFRMEESFSS IKGAAGRPLELSDFRMEESFSSKYVPKYVP R P L F R M 0 1 0 1 0 0 1 0 0 0 2 0 0 1 1 1 0 0 0 0 0 0 8 0 975.50255 P42167 P42167 374 381 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2 0.0001739 141.78 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 1 5 92272000 0 0 92272000 10725 799 11297 46513;46514;46515;46516;46517;46518 38732;38733;38734;38735;38736;38737;38738 38734 7 0 0 15117000 PLFINKPLIVVANK GHGLREQLELFQNIRPLFINKPLIVVANKC RPLFINKPLIVVANKCDVKRIAELSEDDQK R P L N K C 1 0 2 0 0 0 0 0 0 2 2 2 0 1 2 0 0 0 0 2 0 0 14 1 1564.9705 Q9BZE4 Q9BZE4 277 290 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3 0.00049536 101.56 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 26236000 0 6546400 19690000 10726 1941 11298 46519;46520;46521 38739;38740 38740 2 0 2790700 3720500 PLHLHIIPTEPFPTTR NCFELTPAFSQLTARPLHLHIIPTEPFPTT LHLHIIPTEPFPTTRKNGERPSHEVQIIKN R P L T R K 0 1 0 0 0 0 1 0 2 2 2 0 0 1 4 0 3 0 0 0 0 0 16 0 1868.0309 O60306 O60306 1327 1342 AQR Intron-binding protein aquarius yes yes 3;4 0.00094562 80.507 By MS/MS By MS/MS 1.6 0.49 2 3 1 4 20834000 0 2947900 17887000 10727 225 11299 46522;46523;46524;46525;46526 38741;38742;38743 38743 3 0 1327500 3947600 PLHPPPPPPVQPPQHPR DRPSETKTEEQGIPRPLHPPPPPPVQPPQH HPPPPPPVQPPQHPRAEQREQERAVREQWA R P L P R A 0 1 0 0 0 2 0 0 2 0 1 0 0 0 10 0 0 0 0 1 0 0 17 0 1887.0268 Q9UKV3 Q9UKV3 1116 1132 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 4 0.013699 40.624 By MS/MS 9 0 1 1 2330100 0 2330100 0 10728 2184 11300 46527 38744 38744 0 0 1865800 0 PLIQQAMAK YNLHSAYGNWFPGSKPLIQQAMAKIMKANP WFPGSKPLIQQAMAKIMKANPALYVLRERI K P L A K I 2 0 0 0 0 2 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 9 0 998.55829 Q6P2Q9 Q6P2Q9 1724 1732 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00062887 115.69 By MS/MS 1 0 1 1 31938000 0 0 31938000 10729 1490 11301 46528 38745 38745 1 0 0 6881600 PLISVYSEK ______________________________ ______________________________ R P L E K G 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 2 0 0 1 1 0 0 9 0 1034.5648 P36578 P36578 6 14 RPL4 60S ribosomal protein L4 yes yes 2 4.9288E-11 167.24 By MS/MS By MS/MS 5.25 2.82 1 1 2 1 1 1 1 5 3 301380000 0 55396000 245980000 10730 762 11302 46529;46530;46531;46532;46533;46534;46535;46536 38746;38747;38748;38749;38750 38746 5 0 30193000 36849000 PLISVYSEKGESSGK ______________________________ PLISVYSEKGESSGKNVTLPAVFKAPIRPD R P L G K N 0 0 0 0 0 0 2 2 0 1 1 2 0 0 1 4 0 0 1 1 0 0 15 1 1579.8094 P36578 P36578 6 20 RPL4 60S ribosomal protein L4 yes yes 3 0.00012308 108.36 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 94330000 0 71360000 22970000 10731 762 11303 46537;46538;46539;46540 38751;38752;38753 38752 3 0 20532000 3203900 PLKEPSGVAGVDGMLGR LDLHLFLGRSLTLARPLKEPSGVAGVDGML KEPSGVAGVDGMLGRVPQSVVDEEDSGLQS R P L G R V 1 1 0 1 0 0 1 4 0 0 2 1 1 0 2 1 0 0 0 2 0 0 17 1 1681.8821 Q8TDD1 Q8TDD1 466 482 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.0017653 71.143 By matching By MS/MS 1.5 0.5 1 1 1 1 15640000 0 5722200 9917500 10732 1661 11304 46541;46542 38754 38754 1 0 2796900 2241200 PLLIPPVRPVGPGR PESEPELESASSCHRPLLIPPVRPVGPGRA RPLLIPPVRPVGPGRALLLLPVEQGFTFSG R P L G R A 0 2 0 0 0 0 0 2 0 1 2 0 0 0 5 0 0 0 0 2 0 0 14 1 1466.9086 Q5SY16 Q5SY16 110 123 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 0.0017946 84.289 By MS/MS 3 0 1 1 8276600 0 0 8276600 10733 1446 11305 46543 38755 38755 1 0 0 1605300 PLLLKNGKTAGK ECTLGQIVSQTKVTKPLLLKNGKTAGKSTI VTKPLLLKNGKTAGKSTITIVAEEVSGTND K P L G K S 1 0 1 0 0 0 0 2 0 0 3 3 0 0 1 0 1 0 0 0 0 0 12 2 1238.7711 O95741 O95741 126 137 CPNE6 Copine-6 yes yes 2 0.037536 83.265 By MS/MS 2 0 1 1 15067000 15067000 0 0 10734 336 11306 46544 38756 38756 0 18154000 0 0 PLLQVSR KLRNWQWWRLFTKVKPLLQVSRQEEEMMAK WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K P L S R Q 0 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 7 0 811.49159 P35579 P35579 836 842 MYH9 Myosin-9 yes yes 2 0.018521 105.2 By MS/MS 1 0 1 1 13223000 0 13223000 0 10735 752 11307 46545 38757 38757 1 0 6463300 0 PLLSFDPAFDELPHYALLK LAELKMTGNCLKGSRPLLSFDPAFDELPHY FDPAFDELPHYALLKELLIQIFSTPRYHPK R P L L K E 2 0 0 2 0 0 1 0 1 0 5 1 0 2 3 1 0 0 1 0 0 0 19 0 2185.1459 Q8TDN6 Q8TDN6 164 182 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3 1.0915E-10 88.637 By MS/MS 5 0 1 1 0 0 0 0 10736 1663 11308 46546 38758 38758 1 0 0 0 PLPPAAIESPAVAAPAYSR WSQWLGGSSWPGYVRPLPPAAIESPAVAAP AAIESPAVAAPAYSRALSRQLSSGVSEIRH R P L S R A 6 1 0 0 0 0 1 0 0 1 1 0 0 0 5 2 0 0 1 1 0 0 19 0 1877.0047 P04792 P04792 57 75 HSPB1 Heat shock protein beta-1 yes yes 2;3 1.6673E-08 112.15 By matching By MS/MS 7 0 3 1 2 33549000 0 1598100 31951000 10737 417 11309 46547;46548;46549 38759;38760;38761;38762 38759 4 0 917640 5669400 PLPVALQTR ______________________________ ______________________________ M P L T R L 1 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 9 0 993.59712 O60828 O60828 2 10 PQBP1 Polyglutamine-binding protein 1 yes yes 2 0.00038883 121.85 By matching By MS/MS 6.33 0.471 2 1 1 2 30803000 0 9013200 21789000 10738 234 11310 46550;46551;46552 38763 38763 1 0 3120100 3355700 PLSPLHSLTPYQVPFNAVALR SILSYLSQLQPPMPKPLSPLHSLTPYQVPF SLTPYQVPFNAVALRITHSDVAPTHILYAV K P L L R I 2 1 1 0 0 1 0 0 1 0 4 0 0 1 4 2 1 0 1 2 0 0 21 0 2319.2739 Q5SY16 Q5SY16 538 558 NOL9 Polynucleotide 5-hydroxyl-kinase NOL9 yes yes 3 2.8556E-15 154.39 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 52235000 0 29496000 22739000 10739 1446 11311 46553;46554;46555 38764;38765;38766 38766 3 0 12675000 4410300 PLVEEPQNLIK ADPHECYAKVFDEFKPLVEEPQNLIKQNCE DEFKPLVEEPQNLIKQNCELFEQLGEYKFQ K P L I K Q 0 0 1 0 0 1 2 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 11 0 1278.7184 CON__P02768-1;P02768 CON__P02768-1 403 413 ALB Serum albumin yes no 2 1.6531E-09 166.66 By MS/MS By matching 5.33 3.2 1 1 1 1 1 1 5 1 53146000 51123000 0 2023100 + 10740 44 11312 46556;46557;46558;46559;46560;46561 38767;38768;38769;38770 38768 4 39932000 0 282180 PLVETIFER DDSAPNEMVYRFTARPLVETIFERGMATCF YRFTARPLVETIFERGMATCFAYGQTGSGK R P L E R G 0 1 0 0 0 0 2 0 0 1 1 0 0 1 1 0 1 0 0 1 0 0 9 0 1102.6023 O00139 O00139 296 304 KIF2A Kinesin-like protein KIF2A yes yes 2 3.0753E-07 157.86 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 31606000 0 0 31606000 10741 104 11313 46562;46563;46564;46565 38771;38772;38773 38772 3 0 0 6140800 PLVLPSPLVTPGSNSQER SHDNMEEKVPWVCPRPLVLPSPLVTPGSNS LPSPLVTPGSNSQERYIQAEREKGILQELF R P L E R Y 0 1 1 0 0 1 1 1 0 0 3 0 0 0 4 3 1 0 0 2 0 0 18 0 1890.0211 Q96QC0 Q96QC0 466 483 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 2 2.3137E-12 170.95 By MS/MS 2 0 1 1 7046300 0 0 7046300 10742 1823 11314 46566 38774 38774 1 0 0 1592300 PLVQTIFEGGK DETASNEVVYRFTARPLVQTIFEGGKATCF FTARPLVQTIFEGGKATCFAYGQTGSGKTH R P L G K A 0 0 0 0 0 1 1 2 0 1 1 1 0 1 1 0 1 0 0 1 0 0 11 0 1187.655 Q99661 Q99661 331 341 KIF2C Kinesin-like protein KIF2C yes yes 2 0.017144 85.807 By MS/MS 3 0 1 1 12878000 0 0 12878000 10743 1857 11315 46567 38775 38775 1 0 0 2497600 PLYVALAQR TKAVTEMNGRIVATKPLYVALAQRKEERQA RIVATKPLYVALAQRKEERQAHLTNQYMQR K P L Q R K 2 1 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1029.5971 P11940;Q9H361;Q4VXU2;Q13310 P11940 362 370 PABPC1;PABPC3;PABPC1L;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4 no no 2 0.00044644 134.44 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 48363000 0 20016000 28347000 10744 530;1237 11316 46568;46569;46570;46571 38776;38777;38778 38776 3 0 8533000 5129300 PMFIVNTNVPR ______________________________ ______________________________ M P M P R A 0 1 2 0 0 0 0 0 0 1 0 0 1 1 2 0 1 0 0 2 0 0 11 0 1286.6805 P14174 P14174 2 12 MIF Macrophage migration inhibitory factor yes yes 2 2.2559E-73 239.76 By MS/MS By MS/MS By MS/MS 9.22 0.786 2 3 4 3 3 3 78297000 1654800 21631000 55011000 10745 556 11317;11318;11319 46572;46573;46574;46575;46576;46577;46578;46579;46580 38779;38780;38781;38782;38783;38784;38785;38786;38787 38785 245 8 3014700 107190000 16739000 PMIHELLTEGR CTAFGKDVLKLVEARPMIHELLTEGRRSKT VEARPMIHELLTEGRRSKTNKAKTLATWAT R P M G R R 0 1 0 0 0 0 2 1 1 1 2 0 1 0 1 0 1 0 0 0 0 0 11 0 1294.6704 Q14974 Q14974 841 851 KPNB1 Importin subunit beta-1 yes yes 2;3 0.00094014 114.97 By MS/MS 2.17 0.687 1 3 2 6 28815000 0 0 28815000 10746 1325 11320 46581;46582;46583;46584;46585;46586 38788;38789;38790 38790 3 0 0 5928900 PMINLYTDKDTGKPK FKQIGIIKTNKKTGKPMINLYTDKDTGKPK PMINLYTDKDTGKPKGEATVSFDDPPSAKA K P M P K G 0 0 1 2 0 0 0 1 0 1 1 3 1 0 2 0 2 0 1 0 0 0 15 2 1719.8866 Q92804 Q92804 269 283 TAF15 TATA-binding protein-associated factor 2N yes yes 4 0.003426 73.156 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 27972000 0 10944000 17028000 10747 1723 11321 46587;46588;46589;46590 38791;38792 38791 2 0 4665400 3288400 PMNIQLVTSQIDAQR LKAMKQYNGVPLDGRPMNIQLVTSQIDAQR PMNIQLVTSQIDAQRRPAQSVNRGGMTRNR R P M Q R R 1 1 1 1 0 3 0 0 0 2 1 0 1 0 1 1 1 0 0 1 0 0 15 0 1712.888 Q86V81 Q86V81 175 189 ALYREF THO complex subunit 4 yes yes 2;3 1.9147E-107 262.54 By MS/MS By MS/MS 6.43 0.495 4 3 4 3 82655000 0 10712000 71944000 10748 1551 11322 46591;46592;46593;46594;46595;46596;46597 38793;38794;38795;38796;38797;38798 38797 5 0 5021500 10945000 PNHTIYINNLNEK ______________________________ TRPNHTIYINNLNEKIKKDELKKSLYAIFS R P N E K I 0 0 4 0 0 0 1 0 1 2 1 1 0 0 1 0 1 0 1 0 0 0 13 0 1568.7947 P09012 P09012 8 20 SNRPA U1 small nuclear ribonucleoprotein A yes yes 2;3 1.1577E-57 232.19 By MS/MS By MS/MS 6 0 3 1 2 31418000 0 0 31418000 10749 481 11323 46598;46599;46600 38799;38800;38801 38800 3 0 0 4700500 PNLSLLR P N L R 0 1 1 0 0 0 0 0 0 0 3 0 0 0 1 1 0 0 0 0 0 0 7 0 811.49159 REV__Q13535 yes yes 2 0.0029385 140.12 By MS/MS 2.25 0.433 3 1 4 13599000 0 13599000 0 + 10750 2332 11324 46601;46602;46603;46604 38802;38803 38803 2 0 6104700 0 PPYTVVYFPVR ______________________________ ______________________________ M P P V R G 0 1 0 0 0 0 0 0 0 0 0 0 0 1 3 0 1 0 2 3 0 0 11 0 1336.718 P09211 P09211 2 12 GSTP1 Glutathione S-transferase P yes yes 2 4.9945E-27 204.36 By MS/MS By MS/MS By MS/MS 7.75 1.56 2 3 1 2 1 4 3 178570000 15827000 33238000 129500000 10751 482 11325 46605;46606;46607;46608;46609;46610;46611;46612 38804;38805;38806;38807;38808;38809 38809 6 34110000 50963000 61166000 PQAPATVGLAFR GKTLGECGFTSQTARPQAPATVGLAFRADD TARPQAPATVGLAFRADDTFEALCIEPFSS R P Q F R A 3 1 0 0 0 1 0 1 0 0 1 0 0 1 2 0 1 0 0 1 0 0 12 0 1226.6772 Q15370 Q15370 69 80 TCEB2 Transcription elongation factor B polypeptide 2 yes yes 2 1.1584E-56 190.02 By MS/MS By MS/MS 8 0 2 1 1 23155000 0 23155000 0 10752 1359 11326 46613;46614 38810;38811 38811 2 0 10535000 0 PQGGQDILSMMGQLMKPK IQDVTLHDLDVANARPQGGQDILSMMGQLM GQDILSMMGQLMKPKKTEITDKLRGEINKV R P Q P K K 0 0 0 1 0 3 0 3 0 1 2 2 3 0 2 1 0 0 0 0 0 0 18 1 1957.9788 Q9Y265 Q9Y265 250 267 RUVBL1 RuvB-like 1 yes yes 3 0.067027 30.945 By MS/MS By matching 4.5 0.5 1 1 1 1 1727900 0 1169900 557960 10753 2234 11327 46615;46616 38812 38812 1 0 388260 77826 PQLAEQYYDMLIER REAAVELLGRFVLCRPQLAEQYYDMLIERI RPQLAEQYYDMLIERILDTGISVRKRVIKI R P Q E R I 1 1 0 1 0 2 2 0 0 1 2 0 1 0 1 0 0 0 2 0 0 0 14 0 1767.8502 Q6KC79 Q6KC79 1843 1856 NIPBL Nipped-B-like protein yes yes 2 0.00067475 116.01 By MS/MS 1 0 1 1 3427400 0 0 3427400 10754 1480 11328 46617 38813 38813 1 0 0 738480 PQLQDAWR LTAIIEEAEEAPGARPQLQDAWRGPREPGP EEAPGARPQLQDAWRGPREPGPAGRGDGDS R P Q W R G 1 1 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 8 0 1012.509 P58107 P58107 2586 2593 EPPK1 Epiplakin yes no 2 3.4331E-10 130.04 By MS/MS By MS/MS 1 0 2 1 1 6757300 0 6757300 0 10755 958 11329 46618;46619 38814;38815 38815 2 0 3302900 0 PQNEYIELHR ______________________________ ______________________________ M P Q H R K 0 1 1 0 0 1 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 0 10 0 1297.6415 O95478 O95478 2 11 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 3 5.6308E-05 123.96 By matching By MS/MS 6 0 2 1 1 17205000 0 2176000 15029000 10756 329 11330 46620;46621 38816 38816 1 0 753250 2248600 PQQLPHGLGGIGMGLGPGGQPIDANHLNK DERALPKGDFFPPERPQQLPHGLGGIGMGL LGPGGQPIDANHLNKGIGMGNIGPAGMGME R P Q N K G 1 0 2 1 0 3 0 8 2 2 4 1 1 0 4 0 0 0 0 0 0 0 29 0 2872.4766 P52272 P52272 294 322 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 4 0.010254 29.287 By MS/MS By matching 3.5 0.5 1 1 1 1 6186300 0 4124300 2062000 10757 902 11331 46622;46623 38817 38817 1 0 1758200 336800 PQYMVLVPSLLHTETTEK LLLVLLPTDASVSGKPQYMVLVPSLLHTET MVLVPSLLHTETTEKGCVLLSYLNETVTVS K P Q E K G 0 0 0 0 0 1 2 0 1 0 3 1 1 0 2 1 3 0 1 2 0 0 18 0 2085.0816 P01023 P01023 29 46 A2M Alpha-2-macroglobulin yes yes 3 0.00027608 80.638 By MS/MS 9 0 1 1 2349100 2349100 0 0 10758 370 11332 46624 38818 38818 1 1318600 0 0 PQYQTWEEFSR ______________________________ ______________________________ M P Q S R A 0 1 0 0 0 2 2 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 11 0 1469.6575 P49458 P49458 2 12 SRP9 Signal recognition particle 9 kDa protein yes yes 2 7.7497E-90 254.83 By MS/MS By MS/MS 9.8 0.4 1 4 2 3 152920000 0 39626000 113300000 10759 857 11333;11334 46625;46626;46627;46628;46629 38819;38820;38821;38822 38821 4 0 200480000 133580000 PSAAGINLMIGSTR PVNERMLNMIRQISRPSAAGINLMIGSTRY RPSAAGINLMIGSTRYGDGPRPPKMARYDN R P S T R Y 2 1 1 0 0 0 0 2 0 2 1 0 1 0 1 2 1 0 0 0 0 0 14 0 1386.7289 Q08211 Q08211 1141 1154 DHX9 ATP-dependent RNA helicase A yes yes 2 7.5372E-46 226.73 By MS/MS By MS/MS By MS/MS 2 0.756 2 3 2 1 3 3 106940000 5641900 38319000 62976000 10760 1182 11335 46630;46631;46632;46633;46634;46635;46636 38823;38824;38825;38826;38827;38828;38829 38825 7 6797800 17278000 13730000 PSAYHNLFGLPLISR CQGDGVSYEETTIPRPSAYHNLFGLPLISR PSAYHNLFGLPLISRRDAEVVLTSRELDSL R P S S R R 1 1 1 0 0 0 0 1 1 1 3 0 0 1 2 2 0 0 1 0 0 0 15 0 1683.9097 Q96RR1 Q96RR1 241 255 PEO1 Twinkle protein, mitochondrial yes yes 3 0.0024947 73.464 By MS/MS By MS/MS 3 0 2 1 1 4182200 0 1666900 2515300 10761 1830 11336 46637;46638 38830;38831 38831 1 0 710600 487840 PSDVAAYMIDMWK P S W K 2 0 0 2 0 0 0 0 0 1 0 1 2 0 1 1 0 1 1 1 0 0 13 0 1525.6945 REV__Q9UQD0 yes yes 2 0.038608 57.859 By MS/MS 6 0 1 1 10751000 10751000 0 0 + 10762 2346 11337 46639 38832 38832 751 1 14315000 0 0 PSEADPEADPEEATAAR PQPLALQLEQLLNPRPSEADPEADPEEATA EADPEADPEEATAARVIDRFDEGEDGEGDF R P S A R V 5 1 0 2 0 0 4 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 17 0 1754.7595 Q9NY61 Q9NY61 19 35 AATF Protein AATF yes yes 2 4.2759E-05 104.24 By MS/MS 3 0 1 1 4277700 0 0 4277700 10763 2094 11338 46640 38833 38833 1 0 0 829670 PSGEAFVELESEDEVK NGAQGIRFIYTREGRPSGEAFVELESEDEV SGEAFVELESEDEVKLALKKDRETMGHRYV R P S V K L 1 0 0 1 0 0 5 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 16 0 1763.8101 P31943 P31943 53 68 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2 2.6937E-08 166.48 By MS/MS 4 0 1 1 7074300 0 0 7074300 10764 722 11339 46641 38834 38834 1 0 0 1155500 PSGEEVLQDIQVMLK EEAAKEVADEVTRPRPSGEEVLQDIQVMLK PSGEEVLQDIQVMLKSDASPSSIRSLKSDM R P S L K S 0 0 0 1 0 2 2 1 0 1 2 1 1 0 1 1 0 0 0 2 0 0 15 0 1684.8706 P33992 P33992 115 129 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.056476 58.04 By MS/MS 3 0 1 1 6086300 0 0 6086300 10765 732 11340 46642 38835 38835 1 0 0 1180500 PSGLLAQER QVNVRMDSFDEDLARPSGLLAQERKLCRDL DEDLARPSGLLAQERKLCRDLVHSNKKEQE R P S E R K 1 1 0 0 0 1 1 1 0 0 2 0 0 0 1 1 0 0 0 0 0 0 9 0 969.52434 Q9Y2W1 Q9Y2W1 583 591 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 9.3709E-05 143.28 By MS/MS 2 0 1 1 8337300 0 8337300 0 10766 2252 11341 46643 38836 38836 1 0 3754400 0 PSLSLGTITDEEMK VCPPHLKTCYPLESRPSLSLGTITDEEMKT RPSLSLGTITDEEMKTGDPQETLRRASMQP R P S M K T 0 0 0 1 0 0 2 1 0 1 2 1 1 0 1 2 2 0 0 0 0 0 14 0 1519.744 Q14980 Q14980 1944 1957 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0018993 103.44 By MS/MS 5 0.816 1 1 1 3 21412000 0 0 21412000 10767 1327 11342 46644;46645;46646 38837 38837 1 0 0 3131900 PSQMEHAMETMMFTFHK ______________________________ QMEHAMETMMFTFHKFAGDKGYLTKEDLRV M P S H K F 1 0 0 0 0 1 2 0 2 0 0 1 4 2 1 1 2 0 0 0 0 0 17 0 2081.8831 P60903 P60903 2 18 S100A10 Protein S100-A10 yes yes 3 1.7761E-06 116.6 By MS/MS 9 0 1 1 7060400 0 0 7060400 10768 970 11343 46647 38838 38838 1 0 0 2255400 PSRPPSHPSAHGSPAPVSTMPK RAATPTRPPSRPPSRPSRPPSHPSAHGSPA PSAHGSPAPVSTMPKRMSSEGPPRMSPKAQ R P S P K R 2 1 0 0 0 0 0 1 2 0 0 1 1 0 7 5 1 0 0 1 0 0 22 1 2221.1062 Q99700 Q99700 592 613 ATXN2 Ataxin-2 yes yes 4 0.014679 37.56 By MS/MS 2 0 1 1 3230700 0 0 3230700 10769 1858 11344 46648 38839 38839 1 0 0 730080 PSSEVIKDANLYISGLPR GLRLQSKTIKVSYARPSSEVIKDANLYISG EVIKDANLYISGLPRTMTQKDVEDMFSRFG R P S P R T 1 1 1 1 0 0 1 1 0 2 2 1 0 0 2 3 0 0 1 1 0 0 18 1 1958.0473 Q15717 Q15717 98 115 ELAVL1 ELAV-like protein 1 yes yes 3 2.4195E-10 160.45 By MS/MS 6 0 1 1 22955000 0 22955000 0 10770 1380 11345 46649 38840 38840 1 0 7946300 0 PSSINYMVAPVTGNDVGIR AVVSGAPLQGQLVARPSSINYMVAPVTGND NYMVAPVTGNDVGIRRAEIKQGIREVILCK R P S I R R 1 1 2 1 0 0 0 2 0 2 0 0 1 0 2 2 1 0 1 3 0 0 19 0 1988.999 O00560 O00560 86 104 SDCBP Syntenin-1 yes yes 2 6.0003E-65 231.69 By matching By MS/MS By MS/MS 6 0 3 1 1 1 25696000 1191800 4276400 20228000 10771 128 11346 46650;46651;46652 38841;38842 38842 2 1586900 1480300 3026300 PSSSPVIFAGGQDR SQSPPKGVTIPYRPKPSSSPVIFAGGQDRY KPSSSPVIFAGGQDRYSTGSDSASFPHTTP K P S D R Y 1 1 0 1 0 1 0 2 0 1 0 0 0 1 2 3 0 0 0 1 0 0 14 0 1416.6997 Q15366 Q15366 186 199 PCBP2 Poly(rC)-binding protein 2 yes yes 2 9.9822E-18 193.96 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 43337000 0 18868000 24469000 10772 1357 11347 46653;46654;46655;46656 38843;38844;38845 38844 3 0 5968500 3413000 PTVEELYR ______________________________ ______________________________ M P T Y R N 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 0 1 0 1 1 0 0 8 0 1005.5131 Q9BZZ5 Q9BZZ5 2 9 API5 Apoptosis inhibitor 5 yes yes 2 4.8888E-06 158.08 By MS/MS 3.5 0.5 1 1 2 36603000 0 0 36603000 10773 1947 11348 46657;46658 38846;38847 38846 2 0 0 6584500 PTYATAMLQSLLK GIQYLQNAIESRQARPTYATAMLQSLLK__ ARPTYATAMLQSLLK_______________ R P T L K - 2 0 0 0 0 1 0 0 0 0 3 1 1 0 1 1 2 0 1 0 0 0 13 0 1435.7745 Q9UM54 Q9UM54 1282 1294 MYO6 Unconventional myosin-VI yes yes 2 4.437E-17 188.61 By MS/MS 2 0.816 1 1 1 3 9852600 0 9852600 0 10774 2198 11349 46659;46660;46661 38848 38848 1 0 4456200 0 PTYTNLNR EAIYDICRRNLDIERPTYTNLNRLISQIVS RNLDIERPTYTNLNRLISQIVSSITASLRF R P T N R L 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 1 0 0 0 8 0 977.49304 P68363;Q9H853;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 222 229 TUBA1B;TUBA4B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2 6.4967E-05 149.4 By MS/MS 4 0 1 1 9015100 0 0 9015100 10775 1077;1515;1883;1078 11350 46662 38849 38849 1 0 0 1472500 PVALINNQFLPYPYYAK LSRYPSYGLNYYQQKPVALINNQFLPYPYY ALINNQFLPYPYYAKPAAVRSPAQILQWQV K P V A K P 2 0 2 0 0 1 0 0 0 1 2 1 0 1 3 0 0 0 3 1 0 0 17 0 2010.0615 CON__P02668 CON__P02668 47 63 yes yes 2 5.8994E-37 213.34 By MS/MS By matching 1 0 2 1 1 18883000 16600000 0 2282600 + 10776 42 11351 46663;46664 38850 38850 1 16600000 0 491810 PVAPQVPSPGGAPGQGPYPYSLSEPAPLTLDTSGK PPQMLNIPQTSLQAKPVAPQVPSPGGAPGQ SLSEPAPLTLDTSGKNLTEQNSYSNIPHEG K P V G K N 3 0 0 1 0 2 1 5 0 0 3 1 0 0 9 4 2 0 2 2 0 0 35 0 3431.7249 Q9NZB2;Q5T035 Q9NZB2 376 410 FAM120A;C9orf129 Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129 yes no 3 5.8806E-33 110.09 By MS/MS 2 0 1 1 8860400 0 8860400 0 10777 2101 11352 46665 38851 38851 1 0 3990000 0 PVAPSGTALSTTSSK ASNTTPGEPAASSSRPVAPSGTALSTTSSK PVAPSGTALSTTSSKLETPPSKLGELLFPS R P V S K L 2 0 0 0 0 0 0 1 0 0 1 1 0 0 2 4 3 0 0 1 0 0 15 0 1402.7304 P35658 P35658 1295 1309 NUP214 Nuclear pore complex protein Nup214 yes yes 2 0.0020247 90.926 By MS/MS 1 0 1 1 2772800 0 0 2772800 10778 757 11353 46666 38852;38853 38853 2 0 0 597450 PVAVAAGEFLYK EDCENVYHLVYSAHRPVAVAAGEFLYKKLF AHRPVAVAAGEFLYKKLFSRRDPEEDGMMK R P V Y K K 3 0 0 0 0 0 1 1 0 0 1 1 0 1 1 0 0 0 1 2 0 0 12 0 1263.6863 Q8N3U4 Q8N3U4 423 434 STAG2 Cohesin subunit SA-2 yes yes 2 0.010021 94.297 By MS/MS 1.5 0.5 1 1 2 6044900 0 0 6044900 10779 1603 11354 46667;46668 38854 38854 1 0 0 1350000 PVGFSVVPIAAAAVSLK GGLAQQVQVPAGSARPVGFSVVPIAAAAVS GFSVVPIAAAAVSLKVVARGSFDFPVGDAI R P V L K V 4 0 0 0 0 0 0 1 0 1 1 1 0 1 2 2 0 0 0 4 0 0 17 0 1624.9552 CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 895 911 yes no 2 1.0958E-05 110.92 By matching By matching By MS/MS 7.67 0.471 1 2 1 1 1 15083000 230730 2077800 12774000 + 10780 25 11355 46669;46670;46671 38855 38855 1 497280 945310 1958400 PVGSLAGIGEVLGK SQKHRDFVAEPMGEKPVGSLAGIGEVLGKK KPVGSLAGIGEVLGKKLEERGFDKAYVVLG K P V G K K 1 0 0 0 0 0 1 4 0 1 2 1 0 0 1 1 0 0 0 2 0 0 14 0 1295.7449 O75531 O75531 19 32 BANF1 Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed yes yes 2 1.4046E-25 205.56 By MS/MS By MS/MS 10 0 2 1 1 68065000 0 7555800 60509000 10781 269 11356 46672;46673 38856;38857 38857 2 0 38226000 132340000 PVHLTAFLGYK HRGKVKSFPKDDPSKPVHLTAFLGYKAGMT DPSKPVHLTAFLGYKAGMTHIVREVDRPGS K P V Y K A 1 0 0 0 0 0 0 1 1 0 2 1 0 1 1 0 1 0 1 1 0 0 11 0 1244.6917 P39023 P39023 40 50 RPL3 60S ribosomal protein L3 yes yes 3 0.0017358 92.239 By MS/MS 5 0 1 1 969190 0 969190 0 10782 778 11357 46674 38858 38858 1 0 249830 0 PVIACSVTIK VRSKQALGRACGVSRPVIACSVTIKEGSQL CGVSRPVIACSVTIKEGSQLKQQIQSIQQS R P V I K E 1 0 0 0 1 0 0 0 0 2 0 1 0 0 1 1 1 0 0 2 0 0 10 0 1086.6107 P55769 P55769 98 107 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 2 0.00042511 137.14 By MS/MS 8.5 0.5 1 1 2 26896000 0 0 26896000 10783 943 11358 46675;46676 38859 38859 1 0 0 8366800 PVIMPPEVAIGALGSIK FTLSNIGSIGGTFAKPVIMPPEVAIGALGS IMPPEVAIGALGSIKAIPRFNQKGEVYKAQ K P V I K A 2 0 0 0 0 0 1 2 0 3 1 1 1 0 3 1 0 0 0 2 0 0 17 0 1690.9692 P11182 P11182 411 427 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 2;3 6.1243E-05 100.55 By matching By MS/MS 4.4 0.49 3 2 1 4 20278000 0 586620 19691000 10784 519 11359 46677;46678;46679;46680;46681 38860;38861;38862 38862 3 0 194680 3112900 PVIVEPLEQLDDEDGLPEK ERCSEGVFLLTTTPRPVIVEPLEQLDDEDG EPLEQLDDEDGLPEKLAQKNPMYQKERETP R P V E K L 0 0 0 3 0 1 4 1 0 1 3 1 0 0 3 0 0 0 0 2 0 0 19 0 2134.0681 P23246 P23246 444 462 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 3.3035E-41 215.87 By MS/MS By MS/MS 2.58 1.19 2 5 2 2 1 2 10 579970000 0 26704000 553270000 10785 638 11360 46682;46683;46684;46685;46686;46687;46688;46689;46690;46691;46692;46693 38863;38864;38865;38866;38867;38868;38869;38870;38871;38872;38873;38874 38869 12 0 12025000 119500000 PVIVEPMEQFDDEDGLPEK ERCGDGAFLLTTTPRPVIVEPMEQFDDEDG EPMEQFDDEDGLPEKLMQKTQQYHKEREQP R P V E K L 0 0 0 3 0 1 4 1 0 1 1 1 1 1 3 0 0 0 0 2 0 0 19 0 2186.0089 Q8WXF1 Q8WXF1 229 247 PSPC1 Paraspeckle component 1 yes yes 2 8.7103E-09 137.81 By MS/MS 2.5 0.5 1 1 2 12594000 0 0 12594000 10786 1695 11361 46694;46695 38875 38875 1 0 0 2545200 PVLEDLR AKASEQLKALGEKAKPVLEDLRQGLLPVLE KALGEKAKPVLEDLRQGLLPVLESLKVSIL K P V L R Q 0 1 0 1 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 840.47052 CON__P15497 CON__P15497 231 237 yes no 2 0.013359 114.59 By MS/MS 7.5 0.5 1 1 2 24105000 0 0 24105000 + 10787 59 11362 46696;46697 38876 38876 1 0 0 4077500 PVLNFYEANFPANVMDVIAR RRSKEITVRGHNCPKPVLNFYEANFPANVM YEANFPANVMDVIARQNFTEPTAIQAQGWP K P V A R Q 3 1 3 1 0 0 1 0 0 1 1 0 1 2 2 0 0 0 1 3 0 0 20 0 2279.1409 P17844 P17844 92 111 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2;3 5.3405E-102 252.52 By MS/MS By MS/MS 3.5 0.5 3 3 1 5 33002000 0 922530 32080000 10788 588 11363;11364 46698;46699;46700;46701;46702;46703 38877;38878;38879;38880;38881;38882 38879 258 5 0 306150 6031100 PVPLELHIQGFNISHTQTR GCSATSTFNFHPNVRPVPLELHIQGFNISH ELHIQGFNISHTQTRLLSMAKPVYHAITKH R P V T R L 0 1 1 0 0 2 1 1 2 2 2 0 0 1 2 1 2 0 0 1 0 0 19 0 2186.1596 O75643 O75643 1520 1538 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3;4 5.7059E-05 92.307 By MS/MS By MS/MS 1 0 3 1 2 32917000 0 2806200 30111000 10789 277 11365 46704;46705;46706 38883;38884;38885 38883 3 0 1371600 6487900 PVPQVDEAETR QEDDFGVAWVEAFAKPVPQVDEAETRVVKD AFAKPVPQVDEAETRVVKDLAKVSVKEKLK K P V T R V 1 1 0 1 0 1 2 0 0 0 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1239.6095 Q9NQZ2 Q9NQZ2 192 202 UTP3 Something about silencing protein 10 yes yes 2 0.063633 70.552 By MS/MS 3 0 1 1 17507000 0 0 17507000 10790 2037 11366 46707 38886 38886 1 0 0 3395600 PVPSYIQRPDYADHPLGMSESEQALK YTGKLRPHYPLMPTRPVPSYIQRPDYADHP ADHPLGMSESEQALKGTSQIKLLSSEDIEG R P V L K G 2 1 0 2 0 2 2 1 1 1 2 1 1 0 4 3 0 0 2 1 0 0 26 1 2927.4124 P53582 P53582 98 123 METAP1 Methionine aminopeptidase 1 yes yes 4 0.0077152 34.418 By MS/MS 5 0 1 1 30866000 0 0 30866000 10791 920 11367 46708 38887 38887 1 0 0 4305200 PVQDLIK KKLTVNPGTKSKLPKPVQDLIKMIFDVESM GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K P V I K M 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 7 0 811.48035 P09874 P09874 668 674 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0045964 128.57 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 97772000 0 20876000 76895000 10792 492 11368 46709;46710;46711;46712;46713;46714;46715 38888;38889;38890;38891;38892;38893;38894 38889 6 0 9483200 16599000 PVSSAASVYAGAGGSGSR YRSLGSVQAPSYGARPVSSAASVYAGAGGS SAASVYAGAGGSGSRISVSRSTSFRGGMGS R P V S R I 4 1 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 18 0 1579.759 P05783 P05783 28 45 KRT18 Keratin, type I cytoskeletal 18 yes yes 2;3 0 319.7 By MS/MS By MS/MS By MS/MS 4.92 1.78 2 2 2 9 25 2 2 1 1 2 3 18 27 1395800000 27569000 440990000 927220000 10793 436 11369 46716;46717;46718;46719;46720;46721;46722;46723;46724;46725;46726;46727;46728;46729;46730;46731;46732;46733;46734;46735;46736;46737;46738;46739;46740;46741;46742;46743;46744;46745;46746;46747;46748;46749;46750;46751;46752;46753;46754;46755;46756;46757;46758;46759;46760;46761;46762;46763 38895;38896;38897;38898;38899;38900;38901;38902;38903;38904;38905;38906;38907;38908;38909;38910;38911;38912;38913;38914;38915;38916;38917;38918;38919;38920;38921;38922;38923;38924;38925;38926;38927;38928;38929;38930;38931;38932;38933;38934;38935;38936;38937;38938;38939;38940;38941;38942;38943;38944;38945;38946;38947;38948;38949;38950;38951;38952;38953;38954;38955;38956;38957;38958;38959;38960;38961;38962;38963;38964;38965;38966;38967;38968;38969;38970;38971;38972;38973;38974 38901 79 22062000 130370000 144950000 PVSSVGVVGLGTMGR WSTPSGASWKTASARPVSSVGVVGLGTMGR PVSSVGVVGLGTMGRGIVISFARARIPVIA R P V G R G 0 1 0 0 0 0 0 4 0 0 1 0 1 0 1 2 1 0 0 4 0 0 15 0 1414.7602 Q08426 Q08426 296 310 EHHADH Peroxisomal bifunctional enzyme;Enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase;3-hydroxyacyl-CoA dehydrogenase yes yes 2 0.00028742 126.1 By MS/MS 3 0 1 1 3421600 0 3421600 0 10794 1184 11370 46764 38975 38975 1 0 1458600 0 PVSVWDVLFSSYLSEAR RDATMEVQRGQFQGRPVSVWDVLFSSYLSE SVWDVLFSSYLSEARRDELLAQHAAGALGL R P V A R R 1 1 0 1 0 0 1 0 0 0 2 0 0 1 1 4 0 1 1 3 0 0 17 0 1953.9836 P58107 P58107 2656 2672 EPPK1 Epiplakin yes no 2;3 1.8733E-61 236.61 By MS/MS 3 1.41 1 2 3 10076000 0 0 10076000 10795 958 11371 46765;46766;46767 38976;38977;38978 38976 2 0 0 2110600 PVTVEPMDQLDDEEGLPEK DRCSEGSFLLTTFPRPVTVEPMDQLDDEEG EPMDQLDDEEGLPEKLVIKNQQFHKEREQP R P V E K L 0 0 0 3 0 1 4 1 0 0 2 1 1 0 3 0 1 0 0 2 0 0 19 0 2139.9882 Q15233 Q15233 221 239 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 2.0772E-40 209.19 By matching By MS/MS 3.14 1.12 1 1 1 4 1 6 329230000 8176700 0 321060000 10796 1351 11372;11373 46768;46769;46770;46771;46772;46773;46774 38979;38980;38981;38982;38983;38984 38982 618 6 6379300 0 54349000 PWSQHYHQGYY QGYNQWQQGQFWGQKPWSQHYHQGYY____ WGQKPWSQHYHQGYY_______________ K P W Y Y - 0 0 0 0 0 2 0 1 2 0 0 0 0 0 1 1 0 1 3 0 0 0 11 0 1464.6211 Q00839 Q00839 815 825 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 9.423E-21 195.79 By MS/MS By matching By MS/MS 2.56 0.497 4 5 4 1 4 214220000 139680000 1346200 73191000 10797 1127 11374 46775;46776;46777;46778;46779;46780;46781;46782;46783 38985;38986;38987;38988;38989;38990;38991 38986 7 166930000 573870 16096000 PYITINNLNPR RSDPVTLNLLPKLPKPYITINNLNPRENKD KLPKPYITINNLNPRENKDVSTFTCEPKSE K P Y P R E 0 1 3 0 0 0 0 0 0 2 1 0 0 0 2 0 1 0 1 0 0 0 11 0 1313.7092 Q13046;Q00888;P11464;Q16557 Q13046 242 252 PSG7;PSG4;PSG1;PSG3 Putative pregnancy-specific beta-1-glycoprotein 7;Pregnancy-specific beta-1-glycoprotein 4;Pregnancy-specific beta-1-glycoprotein 1;Pregnancy-specific beta-1-glycoprotein 3 yes no 2 0.0048783 101.6 By MS/MS 3 0 1 1 51382000 51382000 0 0 10798 525 11375 46784 38992 38992 1 59283000 0 0 PYLPMIIAPLFR FLGAVAMDLGIDKVKPYLPMIIAPLFRELN KVKPYLPMIIAPLFRELNSTYSEQDPLLKN K P Y F R E 1 1 0 0 0 0 0 0 0 2 2 0 1 1 3 0 0 0 1 0 0 0 12 0 1429.8156 O75691 O75691 2665 2676 UTP20 Small subunit processome component 20 homolog yes yes 2 0.00024149 131.06 By MS/MS 1 0 1 1 2426400 0 0 2426400 10799 280 11376 46785 38993 38993 1 0 0 522800 QAAAAAAAAAATAAWTGTTFTK SAASSYYQQQQQQQKQAAAAAAAAAATAAW AAAATAAWTGTTFTKKAPFQNKQLKPKQPP K Q A T K K 12 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 5 1 0 0 0 0 22 0 2022.0171 Q96KR1 Q96KR1 289 310 ZFR Zinc finger RNA-binding protein yes yes 3 0.00077784 51.568 By MS/MS 2 0 1 1 0 0 0 0 10800 1806 11377 46786 38994 38994 1 0 0 0 QAAPPIELDAVWEDIRER RKMKRKESAFKSMLKQAAPPIELDAVWEDI PPIELDAVWEDIRERFVKEPAFEDITLESE K Q A E R F 3 2 0 2 0 1 3 0 0 2 1 0 0 0 2 0 0 1 0 1 0 0 18 1 2107.0698 O75400 O75400 756 773 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 3 2.9734E-10 159.64 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 17901000 0 2421300 15479000 10801 258 11378 46787;46788;46789 38995;38996 38996 2 0 1090300 3465900 QAASGLVGQENAR SHVKGLGLDESGLAKQAASGLVGQENAREA AKQAASGLVGQENAREACGVIVELIKSKKM K Q A A R E 3 1 1 0 0 2 1 2 0 0 1 0 0 0 0 1 0 0 0 1 0 0 13 0 1299.6531 Q9Y265 Q9Y265 34 46 RUVBL1 RuvB-like 1 yes yes 2 2.006E-05 161.67 By MS/MS 4 0 1 1 6169100 0 0 6169100 10802 2234 11379 46790 38997 38997 1 0 0 1007600 QAASSLQQASLK ELLARKDSETGENIRQAASSLQQASLKLFE NIRQAASSLQQASLKLFEMAYKKMASEREG R Q A L K L 3 0 0 0 0 3 0 0 0 0 2 1 0 0 0 3 0 0 0 0 0 0 12 0 1230.6568 P38646 P38646 635 646 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00061247 123.51 By MS/MS By matching 3.5 0.5 1 1 1 1 7584700 0 5102600 2482100 10803 774 11380 46791;46792 38998 38998 1 0 2175300 405400 QADLYISEGLHPR DGTTSNVLIIGELLKQADLYISEGLHPRII LKQADLYISEGLHPRIITEGFEAAKEKALQ K Q A P R I 1 1 0 1 0 1 1 1 1 1 2 0 0 0 1 1 0 0 1 0 0 0 13 0 1497.7576 P40227;Q92526 P40227 105 117 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 yes no 3 0.065075 38.366 By MS/MS 4 0 1 1 5556200 0 5556200 0 10804 783 11381 46793 38999 38999 1 0 1843900 0 QAEQLSAAGEGGDAGR FTQVTRKGGRRAKKRQAEQLSAAGEGGDAG AEQLSAAGEGGDAGRMDTEEARPAKRPVFP R Q A G R M 4 1 0 1 0 2 2 4 0 0 1 0 0 0 0 1 0 0 0 0 0 0 16 0 1515.6914 Q9NRX1 Q9NRX1 31 46 PNO1 RNA-binding protein PNO1 yes yes 2 6.7268E-91 256.52 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 81889000 0 4625700 77264000 10805 2047 11382 46794;46795;46796;46797 39000;39001 39001 2 0 1601300 11843000 QAFAPFGPIK YVGSIYYELGEDTIRQAFAPFGPIKSIDMS EDTIRQAFAPFGPIKSIDMSWDSVTMKHKG R Q A I K S 2 0 0 0 0 1 0 1 0 1 0 1 0 2 2 0 0 0 0 0 0 0 10 0 1074.5862 Q9UHX1 Q9UHX1 147 156 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 0.038743 75.738 By MS/MS 4 0 1 1 19237000 0 19237000 0 10806 2158 11383 46798 39002 39002 1 0 6384200 0 QAGEVTFADAHRPK LSSRVSWQDLKDFMRQAGEVTFADAHRPKL RQAGEVTFADAHRPKLNEGVVEFASYGDLK R Q A P K L 3 1 0 1 0 1 1 1 1 0 0 1 0 1 1 0 1 0 0 1 0 0 14 1 1525.7637 Q13243 Q13243 130 143 SRSF5 Serine/arginine-rich splicing factor 5 yes yes 3 0.0084924 67.115 By MS/MS 5.5 0.5 1 1 2 17816000 0 17816000 0 10807 1233 11384 46799;46800 39003;39004 39004 2 0 5825100 0 QAHHTDKFSSQELILR ALGVQSINWQTAFNRQAHHTDKFSSQELIL AHHTDKFSSQELILRRGQNFQVLMIMNKGL R Q A L R R 1 1 0 1 0 2 1 0 2 1 2 1 0 1 0 2 1 0 0 0 0 0 16 1 1908.9806 Q08188 Q08188 18 33 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 3 0.0062707 61.732 By MS/MS 9.5 0.5 1 1 2 4792700 4792700 0 0 10808 1181 11385 46801;46802 39005 39005 1 4725300 0 0 QAHLTNQYMQR TKPLYVALAQRKEERQAHLTNQYMQRMASV KEERQAHLTNQYMQRMASVRAVPNPVINPY R Q A Q R M 1 1 1 0 0 3 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 11 0 1388.6619 P11940 P11940 375 385 PABPC1 Polyadenylate-binding protein 1 yes yes 2;3 8.0483E-28 204.64 By MS/MS By MS/MS 3.44 1.42 1 1 3 2 1 1 5 4 116350000 0 73415000 42937000 10809 530 11386 46803;46804;46805;46806;46807;46808;46809;46810;46811 39006;39007;39008;39009;39010 39007 5 0 30966000 7668500 QAILGEHPSSFR KPYLGRRDRGKGRQRQAILGEHPSSFRHDG RQRQAILGEHPSSFRHDGYGSHGPLLPLPS R Q A F R H 1 1 0 0 0 1 1 1 1 1 1 0 0 1 1 2 0 0 0 0 0 0 12 0 1340.6837 Q8WVV9 Q8WVV9 276 287 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes yes 3 0.033402 53.448 By MS/MS 4 0 1 1 9553500 0 9553500 0 10810 1685 11387 46812 39011 39011 1 0 3170500 0 QALDKLNGFQLENFTLK TAVVNVTYSSKDQARQALDKLNGFQLENFT LDKLNGFQLENFTLKVAYIPDEMAAQQNPL R Q A L K V 1 0 2 1 0 2 1 1 0 0 4 2 0 2 0 0 1 0 0 0 0 0 17 1 1978.0524 O00425 O00425 134 150 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 3 0.052999 35.872 By MS/MS 3 0 1 1 3325500 0 3325500 0 10811 121 11388 46813 39012 39012 1 0 1417700 0 QALQDTLALYK EERYKEVAELTRLRKQALQDTLALYKMFSE RLRKQALQDTLALYKMFSEADACELWIDEK K Q A Y K M 2 0 0 1 0 2 0 0 0 0 3 1 0 0 0 0 1 0 1 0 0 0 11 0 1262.6871 Q01082 Q01082 843 853 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00027084 134.25 By MS/MS By MS/MS 1 0 2 1 1 34170000 0 14450000 19719000 10812 1128 11389 46814;46815 39013;39014 39013 2 0 7063100 4248800 QAMLENASDIKLEK AENDFSVSQAEMSSRQAMLENASDIKLEKF RQAMLENASDIKLEKFSISAHGKELFVNAD R Q A E K F 2 0 1 1 0 1 2 0 0 1 2 2 1 0 0 1 0 0 0 0 0 0 14 1 1588.8131 Q8NE71 Q8NE71 295 308 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 3 0.036669 50.352 By MS/MS 2 0 1 1 6746800 0 6746800 0 10813 1638 11390 46816 39015 39015 1 0 3038200 0 QAPAPTVIRDPPSITPAVK TQDPSSPGTTPPQARQAPAPTVIRDPPSIT PTVIRDPPSITPAVKSPLPGPSEEKTLQPS R Q A V K S 3 1 0 1 0 1 0 0 0 2 0 1 0 0 5 1 2 0 0 2 0 0 19 1 1957.0997 Q13112 Q13112 439 457 CHAF1B Chromatin assembly factor 1 subunit B yes yes 3 0.0013543 65.784 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 36825000 0 17811000 19014000 10814 1221 11391 46817;46818;46819;46820 39016;39017;39018 39016 3 0 6608300 3576100 QAQAAVLAVLPR VDPEDDFQREMSFYRQAQAAVLAVLPRLHQ FYRQAQAAVLAVLPRLHQLKVPTKRPTDYF R Q A P R L 4 1 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 12 0 1235.735 Q99848 Q99848 111 122 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2 2.6086E-16 134.66 By MS/MS 6 0 1 1 0 0 0 0 10815 1866 11392 46821 39019 39019 1 0 0 0 QAQAQESEEEEESR EKRKKVKLDLEARERQAQAQESEEEEESRS RQAQAQESEEEEESRSTRTLEQEIERLREE R Q A S R S 2 1 0 0 0 3 6 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 14 0 1648.6813 Q9NVM6 Q9NVM6 106 119 DNAJC17 DnaJ homolog subfamily C member 17 yes yes 2 0.00072648 114.86 By MS/MS 6 0 1 1 1195900 0 0 1195900 10816 2067 11393 46822 39020 39020 1 0 0 178920 QAQEYEALLNIK HLESELAQTRAEGQRQAQEYEALLNIKVKL GQRQAQEYEALLNIKVKLEAEIATYRRLLE R Q A I K V 2 0 1 0 0 2 2 0 0 1 2 1 0 0 0 0 0 0 1 0 0 0 12 0 1418.7405 CON__P05784;P05783 P05783 359 370 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 1.1514E-12 183.72 By MS/MS By MS/MS By MS/MS 4.27 1.21 1 2 3 3 2 3 4 4 412140000 36951000 321980000 53207000 + 10817 436;48 11394 46823;46824;46825;46826;46827;46828;46829;46830;46831;46832;46833 39021;39022;39023;39024;39025;39026;39027 39024 7 37995000 85705000 9113700 QAQIEVVPSASALIIK WKGLRITVKLTIQNRQAQIEVVPSASALII AQIEVVPSASALIIKALKEPPRDRKKQKNI R Q A I K A 3 0 0 0 0 2 1 0 0 3 1 1 0 0 1 2 0 0 0 2 0 0 16 0 1665.9665 P30050 P30050 68 83 RPL12 60S ribosomal protein L12 yes yes 2;3 1.5333E-08 169.98 By MS/MS By MS/MS By MS/MS 7.57 1.05 2 5 5 1 1 2 5 7 619010000 5494900 203870000 409640000 10818 708 11395 46834;46835;46836;46837;46838;46839;46840;46841;46842;46843;46844;46845;46846;46847 39028;39029;39030;39031;39032;39033;39034;39035;39036;39037;39038;39039;39040 39032 13 7137800 104380000 68883000 QAQLAQTLQQQEQASQGLR QDQELAGLKQQAKEKQAQLAQTLQQQEQAS AQTLQQQEQASQGLRHQVEQLSSSLKQKEQ K Q A L R H 3 1 0 0 0 8 1 1 0 0 3 0 0 0 0 1 1 0 0 0 0 0 19 0 2125.0876 Q14980 Q14980 532 550 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 8.2038E-292 337.25 By MS/MS 1 0 1 1 12483000 0 0 12483000 10819 1327 11396 46848 39041 39041 1 0 0 2689700 QAQQERDELADEIANSSGK IQLQEELAAAERAKRQAQQERDELADEIAN ERDELADEIANSSGKGALALEEKRRLEARI R Q A G K G 3 1 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 19 1 2087.972 P35579 P35579 1698 1716 MYH9 Myosin-9 yes yes 2;3 4.3028E-114 266.28 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 153240000 0 114440000 38807000 10820 752 11397 46849;46850;46851;46852 39042;39043;39044;39045 39044 4 0 55512000 8361500 QARPTYATAMLQSLLK RCGGIQYLQNAIESRQARPTYATAMLQSLL ARPTYATAMLQSLLK_______________ R Q A L K - 3 1 0 0 0 2 0 0 0 0 3 1 1 0 1 1 2 0 1 0 0 0 16 1 1790.9713 Q9UM54 Q9UM54 1279 1294 MYO6 Unconventional myosin-VI yes yes 3 0.00059256 87.99 By MS/MS 2 0 1 1 4100600 0 4100600 0 10821 2198 11398 46853 39046 39046 1 0 1846600 0 QASPNIVIALAGNK DTFARAKNWVKELQRQASPNIVIALAGNKA RQASPNIVIALAGNKADLASKRAVEFQEAQ R Q A N K A 3 0 2 0 0 1 0 1 0 2 1 1 0 0 1 1 0 0 0 1 0 0 14 0 1394.7882 P51148 P51148 122 135 RAB5C Ras-related protein Rab-5C yes yes 2 0.059835 62.466 By MS/MS 7 0 1 1 7386000 0 0 7386000 10822 889 11399 46854 39047 39047 1 0 0 1310600 QASQGMVGQLAAR SHIRGLGLDDALEPRQASQGMVGQLAARRA PRQASQGMVGQLAARRAAGVVLEMIREGKI R Q A A R R 3 1 0 0 0 3 0 2 0 0 1 0 1 0 0 1 0 0 0 1 0 0 13 0 1315.6667 Q9Y230 Q9Y230 41 53 RUVBL2 RuvB-like 2 yes yes 2 0.034958 73.499 By MS/MS 4 0 1 1 7806300 0 7806300 0 10823 2228 11400 46855 39048 39048 1 0 2590600 0 QATINIGTIGHVAHGK DVTKLTPLSHEVISRQATINIGTIGHVAHG ATINIGTIGHVAHGKSTVVKAISGVHTVRF R Q A G K S 2 0 1 0 0 1 0 3 2 3 0 1 0 0 0 0 2 0 0 1 0 0 16 0 1615.8794 P41091;Q2VIR3 P41091 39 54 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2;3;4 1.787E-12 176.78 By MS/MS By MS/MS 5.23 1.8 1 5 4 2 1 6 7 322010000 0 83135000 238880000 10824 790 11401 46856;46857;46858;46859;46860;46861;46862;46863;46864;46865;46866;46867;46868 39049;39050;39051;39052;39053;39054;39055;39056 39054 7 0 27179000 39395000 QATTIIADNIIFLSDQTK KIDYGEYMDKNNVRRQATTIIADNIIFLSD TIIADNIIFLSDQTKEKE____________ R Q A T K E 2 0 1 2 0 2 0 0 0 4 1 1 0 1 0 1 3 0 0 0 0 0 18 0 1991.0575 Q04837 Q04837 128 145 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2;3 3.8874E-10 162.67 By MS/MS By MS/MS 8.2 0.4 4 1 2 3 58476000 0 11470000 47006000 10825 1161 11402 46869;46870;46871;46872;46873 39057;39058;39059;39060 39057 4 0 5218600 8227400 QAVDVSPLR REDSTRIGRAGTVRRQAVDVSPLRRVNQAI AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R Q A L R R 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 983.53999 P46782 P46782 137 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 0.0021615 105.14 By matching By MS/MS By MS/MS 7 0 3 1 1 1 261280000 3237300 85438000 172600000 10826 832 11403 46874;46875;46876 39061;39062;39063;39064 39061 4 6977100 49059000 30627000 QAVEMKNDKSEEEQSSSSVK SLLENLEKIEKEQSKQAVEMKNDKSEEEQS KNDKSEEEQSSSSVKKDETNVKMESEGGAD K Q A V K K 1 0 1 1 0 2 4 0 0 0 0 3 1 0 0 5 0 0 0 2 0 0 20 2 2239.0274 P07910 P07910 224 243 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 3;4 1.1481E-13 142.98 By MS/MS 6 0 3 3 38433000 0 38433000 0 10827 467 11404;11405 46877;46878;46879 39065;39066;39067 39067 3 0 13304000 0 QAVTNPNNTFYATK FTADGERLVGMPAKRQAVTNPNNTFYATKR RQAVTNPNNTFYATKRLIGRRYDDPEVQKD R Q A T K R 2 0 3 0 0 1 0 0 0 0 0 1 0 1 1 0 3 0 1 1 0 0 14 0 1567.7631 P38646 P38646 108 121 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00052274 119.39 By matching By MS/MS By MS/MS 3 0 3 1 1 1 28198000 5035800 9422700 13740000 10828 774 11406 46880;46881;46882 39068;39069 39068 2 5810200 4016900 2664900 QDAQSLHGDIPQK TKKEAQELSQNSAIKQDAQSLHGDIPQKQR IKQDAQSLHGDIPQKQREITLKGFRNGSFG K Q D Q K Q 1 0 0 2 0 3 0 1 1 1 1 1 0 0 1 1 0 0 0 0 0 0 13 0 1435.7056 Q9NR30 Q9NR30 462 474 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.1013E-07 169.21 By MS/MS 2 0 1 1 3140500 0 3140500 0 10829 2038 11407 46883 39070 39070 1 0 1414200 0 QDDPFELFIAATNIR RQLQKKIKNGTLNIKQDDPFELFIAATNIR QDDPFELFIAATNIRYCYYNETHKILGNTF K Q D I R Y 2 1 1 2 0 1 1 0 0 2 1 0 0 2 1 0 1 0 0 0 0 0 15 0 1748.8733 Q9H0A0 Q9H0A0 89 103 NAT10 N-acetyltransferase 10 yes yes 3 9.3456E-05 109.64 By MS/MS 2 0 1 1 1591100 0 0 1591100 10830 1959 11408 46884 39071 39071 1 0 0 359560 QDEHGYISR TKDGVVEITGKHEERQDEHGYISRCFTRKY GKHEERQDEHGYISRCFTRKYTLPPGVDPT R Q D S R C 0 1 0 1 0 1 1 1 1 1 0 0 0 0 0 1 0 0 1 0 0 0 9 0 1103.4996 P04792 P04792 128 136 HSPB1 Heat shock protein beta-1 yes yes 2 0.00037034 121.35 By MS/MS 6.5 0.5 1 1 2 3969600 0 0 3969600 10831 417 11409 46885;46886 39072 39072 1 0 0 699640 QDGQFSVLFTK TQHAVEGDCDIHVLKQDGQFSVLFTKCDSS HVLKQDGQFSVLFTKCDSSPDSAEDVRKLC K Q D T K C 0 0 0 1 0 2 0 1 0 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1268.6401 CON__P12763 CON__P12763 121 131 yes yes 2 2.3243E-26 196.07 By MS/MS By MS/MS By MS/MS 5.27 2.52 1 2 3 6 5 2 1 2 1 3 8 13 5 1022100000 631920000 197070000 193130000 + 10832 55 11410 46887;46888;46889;46890;46891;46892;46893;46894;46895;46896;46897;46898;46899;46900;46901;46902;46903;46904;46905;46906;46907;46908;46909;46910;46911;46912 39073;39074;39075;39076;39077;39078;39079;39080;39081;39082;39083;39084;39085;39086;39087;39088;39089;39090;39091;39092;39093;39094 39076 22 511570000 183340000 33309000 QDHAQQLATAAEER EQQLKEVAEKQEATRQDHAQQLATAAEERE RQDHAQQLATAAEEREASLRERDAALKQLE R Q D E R E 4 1 0 1 0 3 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 14 0 1566.7386 Q14980 Q14980 579 592 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 1.9988E-72 241.31 By MS/MS By MS/MS 1 0 2 1 1 28328000 0 3814500 24514000 10833 1327 11411 46913;46914 39095;39096 39096 2 0 1864500 5281900 QDHPSSMGVYGQESGGFSGPGENR YSQQSSSYGQQSSFRQDHPSSMGVYGQESG YGQESGGFSGPGENRSMSGPDNRGRGRGGF R Q D N R S 0 1 1 1 0 2 2 6 1 0 0 0 1 1 2 4 0 0 1 1 0 0 24 0 2479.0459 Q01844 Q01844 269 292 EWSR1 RNA-binding protein EWS yes yes 3 2.9358E-21 144.91 By MS/MS 2 0 1 1 7334100 0 7334100 0 10834 1141 11412 46915 39097 39097 1 0 3302600 0 QDIAFAYQR VTIVNILTNRSNAQRQDIAFAYQRRTKKEL RSNAQRQDIAFAYQRRTKKELASALKSALS R Q D Q R R 2 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 9 0 1110.5458 P07355 P07355 69 77 ANXA2 Annexin A2 yes yes 2 1.0195E-31 199.07 By MS/MS By MS/MS By MS/MS 6.38 1.93 1 2 3 1 1 5 1 2 89311000 31044000 7926700 50341000 10835 459 11413 46916;46917;46918;46919;46920;46921;46922;46923 39098;39099;39100;39101;39102;39103 39099 6 33739000 2743900 7453400 QDLTTLDVTK GGEAGVTLGQPHLSRQDLTTLDVTKLTPLS PHLSRQDLTTLDVTKLTPLSHEVISRQATI R Q D T K L 0 0 0 2 0 1 0 0 0 0 2 1 0 0 0 0 3 0 0 1 0 0 10 0 1132.5976 P41091;Q2VIR3 P41091 18 27 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 2 0.0017209 108.15 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 89681000 0 30687000 58994000 10836 790 11414 46924;46925;46926 39104;39105 39104 2 0 10184000 9352100 QDPLNETHLQTTSGR KYSHTVNHKPMVCQRQDPLNETHLQTTSGR QDPLNETHLQTTSGRSIEIKDELKKKKNLN R Q D G R S 0 1 1 1 0 2 1 1 1 0 2 0 0 0 1 1 3 0 0 0 0 0 15 0 1695.8176 Q7Z6I8 Q7Z6I8 56 70 C5orf24 UPF0461 protein C5orf24 yes yes 3 0.004359 66.965 By MS/MS 7 0 1 1 14198000 0 0 14198000 10837 1534 11415 46927 39106 39106 1 0 0 2519300 QDPPSVVVTSHQAPGEK TLRKYLKYSKNILDRQDPPSVVVTSHQAPG PPSVVVTSHQAPGEKKKLKCLAYDFYPGKI R Q D E K K 1 0 0 1 0 2 1 1 1 0 0 1 0 0 3 2 1 0 0 3 0 0 17 0 1774.885 P25311 P25311 204 220 AZGP1 Zinc-alpha-2-glycoprotein yes yes 3 1.884E-06 136.34 By MS/MS By MS/MS 6.17 3.02 1 1 1 1 1 1 1 1 2 2 10 2 150010000 144760000 0 5252000 10838 656 11416 46928;46929;46930;46931;46932;46933;46934;46935;46936;46937;46938;46939 39107;39108;39109;39110;39111;39112;39113;39114;39115;39116;39117;39118 39110 12 155200000 0 8205600 QDSLVINLNR KTREAEEKEKEGIVKQDSLVINLNRSNPKL EGIVKQDSLVINLNRSNPKLKDLYIRPNIA K Q D N R S 0 1 2 1 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1170.6357 Q9Y5B9 Q9Y5B9 648 657 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00056436 129.42 By MS/MS By matching 2.5 0.5 1 1 1 1 29324000 0 22158000 7166300 10839 2296 11417 46940;46941 39119 39119 1 0 9977800 1389900 QDTQAPVVPYWR FTPSLSETVNRDGPRQDTQAPVVPYWRLPG GPRQDTQAPVVPYWRLPGLGIIIYLLKQSA R Q D W R L 1 1 0 1 0 2 0 0 0 0 0 0 0 0 2 0 1 1 1 2 0 0 12 0 1458.7256 Q92621 Q92621 1797 1808 NUP205 Nuclear pore complex protein Nup205 yes yes 2 1.8546E-06 162.88 By MS/MS 1.5 0.5 1 1 2 7433300 0 0 7433300 10840 1714 11418 46942;46943 39120 39120 1 0 0 1614800 QDVDNASLAR MLQREEAENTLQSFRQDVDNASLARLDLER LQSFRQDVDNASLARLDLERKVESLQEEIA R Q D A R L 2 1 1 2 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 10 0 1087.5258 P08670 P08670 208 217 VIM Vimentin yes yes 2 1.0024E-61 229.33 By MS/MS By MS/MS By MS/MS 4.2 1.25 1 2 3 2 2 1 5 4 652230000 2734800 107510000 541980000 10841 476 11419 46944;46945;46946;46947;46948;46949;46950;46951;46952;46953 39121;39122;39123;39124;39125;39126;39127;39128;39129;39130;39131 39128 11 2133600 35628000 87652000 QEAADAALR RWFPAVCAHSKKQGKQEAADAALRVLIGEN SKKQGKQEAADAALRVLIGENEKAERMGFT K Q E L R V 4 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9 0 943.47231 P55265 P55265 782 790 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.0098425 88.921 By MS/MS 2.5 0.5 1 1 2 2931200 0 2931200 0 10842 941 11420 46954;46955 39132 39132 1 0 1304500 0 QEAATLAANNTQLQAR KGEVLGDVLQLETLKQEAATLAANNTQLQA EAATLAANNTQLQARVEMLETERGQQEAKL K Q E A R V 5 1 2 0 0 3 1 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 16 0 1698.8649 Q14980 Q14980 420 435 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 5.3844E-174 300.7 By MS/MS By MS/MS 1 0 2 1 1 31284000 0 5606100 25678000 10843 1327 11421 46956;46957 39133;39134 39134 2 0 2740200 5532700 QEAFSIR LLYDWSDKNTNIAQKQEAFSIRMSQLEVKE KNTNIAQKQEAFSIRMSQLEVKEKELNKLK K Q E I R M 1 1 0 0 0 1 1 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 7 0 849.43447 P15924 P15924 309 315 DSP Desmoplakin yes yes 2 0.06211 74.415 By MS/MS 1 0 1 1 7669500 0 7669500 0 10844 572 11422 46958 39135 39135 1 0 3748700 0 QEAGISEGQGTAGEEEEK FPNEFAKLTVENSPKQEAGISEGQGTAGEE GISEGQGTAGEEEEKKKQKRGGRGQIKQKK K Q E E K K 2 0 0 0 0 2 6 4 0 1 0 1 0 0 0 1 1 0 0 0 0 0 18 0 1847.8021 O43583 O43583 76 93 DENR Density-regulated protein yes yes 2 2.6514E-79 240.11 By MS/MS 6 0 1 1 10925000 0 0 10925000 10845 202 11423 46959 39136 39136 1 0 0 1634400 QEAGISEGQGTAGEEEEKKK FPNEFAKLTVENSPKQEAGISEGQGTAGEE SEGQGTAGEEEEKKKQKRGGRGQIKQKKKT K Q E K K Q 2 0 0 0 0 2 6 4 0 1 0 3 0 0 0 1 1 0 0 0 0 0 20 2 2103.992 O43583 O43583 76 95 DENR Density-regulated protein yes yes 4 0.0029331 56.529 By matching By MS/MS 6 0 2 1 1 5363300 0 2567800 2795600 10846 202 11424 46960;46961 39137 39137 1 0 888870 418250 QEAKPEAFVLSPLEMSST LPLLSPEFLLTGVLKQEAKPEAFVLSPLEM KPEAFVLSPLEMSST_______________ K Q E S T - 2 0 0 0 0 1 3 0 0 0 2 1 1 1 2 3 1 0 0 1 0 0 18 1 1962.9608 Q14676 Q14676 2072 2089 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0049021 93.839 By MS/MS 1 0 1 1 6133600 0 0 6133600 10847 1310 11425 46962 39138 39138 1 0 0 1321600 QEDKDDLDVTELTNEDLLDQLVK AAVGRKATKKTDKPRQEDKDDLDVTELTNE VTELTNEDLLDQLVKYGVNPGPIVGTTRKL R Q E V K Y 0 0 1 6 0 2 3 0 0 0 5 2 0 0 0 0 2 0 0 2 0 0 23 1 2687.3025 P42166;P42167 P42166 104 126 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 3 0.0010077 57.826 By MS/MS 4.5 0.5 1 1 2 43309000 0 0 43309000 10848 798;799 11426 46963;46964 39139 39139 1 0 0 7041000 QEEEMMAKEEELVK WRLFTKVKPLLQVSRQEEEMMAKEEELVKV RQEEEMMAKEEELVKVREKQLAAENRLTEM R Q E V K V 1 0 0 0 0 1 6 0 0 0 1 2 2 0 0 0 0 0 0 1 0 0 14 1 1721.7852 P35579 P35579 843 856 MYH9 Myosin-9 yes yes 2;3 6.908E-24 199.82 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 34704000 0 23623000 11081000 10849 752 11427 46965;46966;46967;46968 39140;39141;39142 39141 3 0 11485000 2387700 QEEQMETEQQNKDEGK LKGQHEKEAADRKRKQEEQMETEQQNKDEG EEQMETEQQNKDEGKKPEVKKVEKKRETSM K Q E G K K 0 0 1 1 0 4 5 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 16 1 1949.8273 O75475 O75475 318 333 PSIP1 PC4 and SFRS1-interacting protein yes yes 3 0.00065913 87.148 By MS/MS 3 0 1 1 2165000 0 0 2165000 10850 262 11428 46969 39143 39143 1 0 0 419900 QEGLESVLK NCLWTLRNLSDVATKQEGLESVLKILVNQL SDVATKQEGLESVLKILVNQLSVDDVNVLT K Q E L K I 0 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 0 1 0 0 9 0 1001.5393 P14923 P14923 386 394 JUP Junction plakoglobin yes yes 2 0.019697 82.426 By MS/MS By matching 9 0.816 1 1 1 2 1 18148000 16230000 0 1918400 10851 567 11429 46970;46971;46972 39144 39144 1 9956300 0 4195700 QEIAEINR QVTAGRHGDDLRNTKQEIAEINRMIQRLRS DDLRNTKQEIAEINRMIQRLRSEIDHVKKQ K Q E N R M 1 1 1 0 0 1 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8 0 971.50361 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 379 386 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 4.6351E-20 189.53 By MS/MS By matching 6.2 2.48 1 1 2 1 2 1 1 1 8 2 133870000 112960000 0 20906000 + 10852 68;37;47;69 11430 46973;46974;46975;46976;46977;46978;46979;46980;46981;46982 39145;39146;39147;39148;39149;39150 39149 6 110600000 0 3100600 QEIECQNQEYSLLLSIK QEQISNLEAQITDVRQEIECQNQEYSLLLS IECQNQEYSLLLSIKMRLEKEIETYHNLLE R Q E I K M 0 0 1 0 1 3 3 0 0 2 3 1 0 0 0 2 0 0 1 0 0 0 17 0 2094.0303 P35527;CON__P35527 P35527 428 444 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.5942E-61 236.92 By MS/MS By MS/MS 4.25 2.95 1 1 1 1 2 2 23060000 10932000 0 12128000 + 10853 750 11431 46983;46984;46985;46986 39151;39152;39153;39154 39151 4 8139600 0 2504200 QEISSLKDELQTALR EVLLRVKESEIQYLKQEISSLKDELQTALR QEISSLKDELQTALRDKKYASDKYKDIYTE K Q E L R D 1 1 0 1 0 2 2 0 0 1 3 1 0 0 0 2 1 0 0 0 0 0 15 1 1729.921 Q6WCQ1 Q6WCQ1 918 932 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.021785 53.491 By MS/MS 1.5 0.5 1 1 2 6594800 0 0 6594800 10854 1507 11432 46987;46988 39155 39155 1 0 0 1463100 QEKPAEKPAETPVATSPTATDSTSGDSSR SATASSEPAPASAAKQEKPAEKPAETPVAT TSPTATDSTSGDSSRSNLFEDATSALVTGQ K Q E S R S 4 1 0 2 0 1 3 1 0 0 0 2 0 0 4 5 5 0 0 1 0 0 29 2 2944.3898 P54727 P54727 145 173 RAD23B UV excision repair protein RAD23 homolog B yes yes 4 3.5858E-11 85.002 By MS/MS 4 0 1 1 12442000 0 0 12442000 10855 931 11433 46989 39156 39156 1 0 0 2032200 QELIKQWENTIEQMQK LDKAAQDFRKIHNERQELIKQWENTIEQMQ ELIKQWENTIEQMQKRDGDIDNCALELARI R Q E Q K R 0 0 1 0 0 4 3 0 0 2 1 2 1 0 0 0 1 1 0 0 0 0 16 1 2045.0252 Q9UFE4 Q9UFE4 221 236 CCDC39 Coiled-coil domain-containing protein 39 yes yes 2 0.00051257 108.9 By MS/MS 4 0 1 1 22920000 22920000 0 0 10856 2140 11434 46990 39157 39157 1 17882000 0 0 QELLEALTK KEACRAYGLKSGLKKQELLEALTKHFQD__ KSGLKKQELLEALTKHFQD___________ K Q E T K H 1 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1043.5863 P12956 P12956 597 605 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.0096503 89.047 By MS/MS By MS/MS 3 0 2 1 1 16359000 0 4924200 11435000 10857 541 11435 46991;46992 39158;39159 39159 2 0 2099200 2217800 QELLGWLAEK EDLSEELKKENPFLRQELLGWLAEKLPTLR NPFLRQELLGWLAEKLPTLRSTPTDLILCV R Q E E K L 1 0 0 0 0 1 2 1 0 0 3 1 0 0 0 0 0 1 0 0 0 0 10 0 1185.6394 Q14008 Q14008 996 1005 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0034681 102.06 By MS/MS By MS/MS 1 0 2 1 1 28293000 0 4122300 24170000 10858 1279 11436 46993;46994 39160;39161 39161 2 0 2014900 5207900 QELNPLK SAAAVQGTAKVTSSRQELNPLKSIVEKSIL TAKVTSSRQELNPLKSIVEKSILLTEQALA R Q E L K S 0 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 7 0 840.47052 Q9GZZ8 Q9GZZ8 79 85 LACRT Extracellular glycoprotein lacritin yes yes 2 0.0056234 127.12 By MS/MS By matching 5.78 3.26 1 1 1 1 1 1 1 2 8 1 549100000 548700000 0 405700 10859 1956 11437 46995;46996;46997;46998;46999;47000;47001;47002;47003 39162;39163;39164;39165 39164 4 640880000 0 887310 QELSFYSIPEFDEWKK LEEFITPIVKASKNKQELSFYSIPEFDEWK ELSFYSIPEFDEWKKHIENQKAWKIKYYKG K Q E K K H 0 0 0 1 0 1 3 0 0 1 1 2 0 2 1 2 0 1 1 0 0 0 16 1 2044.9782 Q02880 Q02880 606 621 TOP2B DNA topoisomerase 2-beta yes yes 3 0.072407 26.362 By MS/MS 1.5 0.5 1 1 2 5800500 0 0 5800500 10860 1150 11438 47004;47005 39166 39166 1 0 0 1276300 QELSHALYQHDAACR MLHSFTLRQQLQTTRQELSHALYQHDAACR QELSHALYQHDAACRVIARLTKEVTAAREA R Q E C R V 3 1 0 1 1 2 1 0 2 0 2 0 0 0 0 1 0 0 1 0 0 0 15 0 1797.8217 Q9UMS4 Q9UMS4 101 115 PRPF19 Pre-mRNA-processing factor 19 yes yes 3;4 9.2642E-05 141.65 By MS/MS By MS/MS 3.67 0.471 2 4 2 4 39669000 0 8052400 31616000 10861 2199 11439 47006;47007;47008;47009;47010;47011 39167;39168;39169;39170 39170 4 0 2672300 5366100 QEMHKDLEEVK QEFWDNLEKETASLRQEMHKDLEEVKQKVQ ASLRQEMHKDLEEVKQKVQPYLDEFQKKWH R Q E V K Q 0 0 0 1 0 1 3 0 1 0 1 2 1 0 0 0 0 0 0 1 0 0 11 1 1384.6657 CON__P15497 CON__P15497 107 117 yes yes 2;3 0.050397 97.565 By MS/MS 8.67 1.25 1 1 1 3 11166000 0 0 11166000 + 10862 59 11440 47012;47013;47014 39171;39172 39172 2 0 0 10231000 QEMQEVQSSR TINGHNAEVRKALSRQEMQEVQSSRSGRGG KALSRQEMQEVQSSRSGRGGNFGFGDSRGG R Q E S R S 0 1 0 0 0 3 2 0 0 0 0 0 1 0 0 2 0 0 0 1 0 0 10 0 1220.5455 P22626 P22626 191 200 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 7.5655E-129 274.41 By MS/MS By MS/MS By MS/MS 4.8 1.81 1 2 2 3 3 5 4 3 12 5 352490000 9916300 232220000 110350000 10863 632 11441;11442 47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029;47030;47031;47032;47033;47034 39173;39174;39175;39176;39177;39178;39179;39180;39181;39182;39183;39184;39185;39186;39187;39188;39189;39190;39191;39192;39193;39194;39195;39196 39187 282 23 13587000 79412000 16712000 QEPERNECFLQHK TLRETYGEMADCCAKQEPERNECFLQHKDD AKQEPERNECFLQHKDDNPNLPRLVRPEVD K Q E H K D 0 1 1 0 1 2 3 0 1 0 1 1 0 1 1 0 0 0 0 0 0 0 13 1 1713.7893 CON__P02768-1;P02768 CON__P02768-1 118 130 ALB Serum albumin yes no 3 0.000803 104.59 By MS/MS 6.5 2.5 1 1 2 24001000 24001000 0 0 + 10864 44 11443 47035;47036 39197;39198;39199 39198 3 14502000 0 0 QEPERNECFLQHKDDNPNLPR TLRETYGEMADCCAKQEPERNECFLQHKDD ECFLQHKDDNPNLPRLVRPEVDVMCTAFHD K Q E P R L 0 2 3 2 1 2 3 0 1 0 2 1 0 1 3 0 0 0 0 0 0 0 21 2 2635.2197 CON__P02768-1;P02768 CON__P02768-1 118 138 ALB Serum albumin yes no 3;4 4.3052E-14 137.61 By MS/MS 9 0 2 2 72025000 72025000 0 0 + 10865 44 11444 47037;47038 39200;39201 39201 2 40428000 0 0 QEPSDSPMFIINR EPNNLNSKIAFKIIRQEPSDSPMFIINRNT IRQEPSDSPMFIINRNTGEIRTMNNFLDRE R Q E N R N 0 1 1 1 0 1 1 0 0 2 0 0 1 1 2 2 0 0 0 0 0 0 13 0 1532.7293 Q02413 Q02413 201 213 DSG1 Desmoglein-1 yes yes 2 0.0022826 107.95 By MS/MS By matching By matching 6.25 2.44 1 2 1 1 1 1 1 5 1 2 37429000 23709000 5514700 8205300 10866 1146 11445;11446 47039;47040;47041;47042;47043;47044;47045;47046 39202;39203;39204;39205 39203 549 4 19681000 1830100 3873200 QEPSQGTTTFAVTSILR SQELPREKYLTWASRQEPSQGTTTFAVTSI PSQGTTTFAVTSILRVAAEDWKKGDTFSCM R Q E L R V 1 1 0 0 0 2 1 1 0 1 1 0 0 1 1 2 4 0 0 1 0 0 17 0 1834.9425 P01876 P01876 283 299 IGHA1 Ig alpha-1 chain C region yes yes 2 4.0528E-09 167.73 By MS/MS 4.83 3.44 1 1 1 1 1 1 6 28672000 28672000 0 0 10867 386 11447 47047;47048;47049;47050;47051;47052 39206;39207;39208 39206 3 27044000 0 0 QEQHEAQAQVAELELQLR SRKVEELQACVETARQEQHEAQAQVAELEL HEAQAQVAELELQLRSEQQKATEKERVAQE R Q E L R S 3 1 0 0 0 5 4 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 18 0 2119.0658 Q14980 Q14980 664 681 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 0.032315 43.727 By MS/MS 1 0 1 1 1682700 0 1682700 0 10868 1327 11448 47053 39209 39209 0 0 822480 0 QEQINTEPLEDTVLSPTKK PKGKETFEPEDKTVKQEQINTEPLEDTVLS NTEPLEDTVLSPTKKRKRQKGTEGMEPEEG K Q E K K R 0 0 1 1 0 2 3 0 0 1 2 2 0 0 2 1 3 0 0 1 0 0 19 1 2169.1165 O15446 O15446 271 289 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 3 0.071957 23.683 By matching By MS/MS 2 0 2 1 1 7482900 4031700 3451200 0 10869 182 11449 47054;47055 39210 39210 1 4857700 1554100 0 QEQLTPGVVYVR KEVAQVRKRITQRKKQEQLTPGVVYVRHLP RKKQEQLTPGVVYVRHLPNLLDETQIFSYF K Q E V R H 0 1 0 0 0 2 1 1 0 0 1 0 0 0 1 0 1 0 1 3 0 0 12 0 1387.746 Q9BYG3 Q9BYG3 39 50 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 0.00087 119.62 By MS/MS 6 0 1 1 12891000 0 0 12891000 10870 1936 11450 47056 39211 39211 1 0 0 1928600 QEQQEGPVGPAPSRPALQEK DRKAIARFQQGQQGRQEQQEGPVGPAPSRP GPVGPAPSRPALQEKQPEKEEEEEAGESVE R Q E E K Q 2 1 0 0 0 4 3 2 0 0 1 1 0 0 4 1 0 0 0 1 0 0 20 1 2145.0814 Q8TDD1 Q8TDD1 612 631 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 6.675E-11 112.55 By MS/MS By MS/MS 2 0 2 1 1 12550000 0 6554600 5995300 10871 1661 11451 47057;47058 39212;39213 39212 2 0 2951600 1354800 QEQVTAAVAHAVEQQMQK QWNLQQQEQHLLALRQEQVTAAVAHAVEQQ VTAAVAHAVEQQMQKLLEETQLDMNEFDNL R Q E Q K L 4 0 0 0 0 5 2 0 1 0 0 1 1 0 0 0 1 0 0 3 0 0 18 0 1994.9844 Q8IWX8 Q8IWX8 128 145 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 3 6.3658E-06 100.27 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 21254000 0 7582700 13672000 10872 1577 11452 47059;47060;47061 39214;39215 39214 2 0 3414600 2992700 QESDQLVLNQHPASDK MSQLEVKEKELNKLKQESDQLVLNQHPASD ESDQLVLNQHPASDKIEAYMDTLQTQWSWI K Q E D K I 1 0 1 2 0 3 1 0 1 0 2 1 0 0 1 2 0 0 0 1 0 0 16 0 1807.8701 P15924 P15924 331 346 DSP Desmoplakin yes yes 3 9.2543E-06 112.62 By MS/MS 1 0 1 1 5653800 0 0 5653800 10873 572 11453 47062 39216 39216 1 0 0 1218200 QESGSEIHVEVK VLKKIIKEQPQPSGKQESGSEIHVEVKAQS SGKQESGSEIHVEVKAQSLVISPPAPSPRK K Q E V K A 0 0 0 0 0 1 3 1 1 1 0 1 0 0 0 2 0 0 0 2 0 0 12 0 1340.6572 P46013 P46013 561 572 MKI67 Antigen KI-67 yes yes 3 0.05045 45.28 By MS/MS 1.5 0.5 1 1 2 7538400 0 0 7538400 10874 821 11454 47063;47064 39217 39217 1 0 0 1659800 QETFDAGLQAFQQEGIANITALKDQLLAAK DYGRDLSSVQTLLTKQETFDAGLQAFQQEG IANITALKDQLLAAKHVQSKAIEARHASLM K Q E A K H 6 0 1 2 0 5 2 2 0 2 4 2 0 2 0 0 2 0 0 0 0 0 30 1 3231.6776 Q13813 Q13813 2018 2047 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 5.9679E-12 69.356 By MS/MS 1 0 1 1 2186500 0 0 2186500 10875 1268 11455 47065 39218 39218 1 0 0 471110 QEVPIIIVFR SAIGQRIVATLPYIKQEVPIIIVFRALGFV LPYIKQEVPIIIVFRALGFVSDRDILEHII K Q E F R A 0 1 0 0 0 1 1 0 0 3 0 0 0 1 1 0 0 0 0 2 0 0 10 0 1212.723 P30876 P30876 265 274 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 0.00029612 123.72 By MS/MS 2 0 1 1 2973800 0 0 2973800 10876 715 11456 47066 39219 39219 1 0 0 672020 QEYDESGPSIVHR ILASLSTFQQMWISKQEYDESGPSIVHRKC SKQEYDESGPSIVHRKCF____________ K Q E H R K 0 1 0 1 0 1 2 1 1 1 0 0 0 0 1 2 0 0 1 1 0 0 13 0 1515.6954 P60709;A5A3E0;P63261;P0CG38;P0CG39;Q6S8J3;Q9BYX7 P60709 360 372 ACTB;POTEF;ACTG1;POTEI;POTEJ;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 2;3 1.126E-195 309.77 By MS/MS By MS/MS By MS/MS 5.17 2.66 3 2 4 3 6 4 2 1 2 3 2 10 18 2577700000 53227000 475380000 2049100000 10877 966;1069;1501;499 11457 47067;47068;47069;47070;47071;47072;47073;47074;47075;47076;47077;47078;47079;47080;47081;47082;47083;47084;47085;47086;47087;47088;47089;47090;47091;47092;47093;47094;47095;47096 39220;39221;39222;39223;39224;39225;39226;39227;39228;39229;39230;39231;39232;39233;39234;39235;39236;39237;39238;39239;39240;39241;39242;39243;39244;39245;39246;39247;39248;39249;39250 39229 31 42642000 145120000 382240000 QEYDESGPSIVHRK ILASLSTFQQMWISKQEYDESGPSIVHRKC KQEYDESGPSIVHRKCF_____________ K Q E R K C 0 1 0 1 0 1 2 1 1 1 0 1 0 0 1 2 0 0 1 1 0 0 14 1 1643.7903 P60709;A5A3E0;P63261;P0CG38;P0CG39;Q6S8J3;Q9BYX7 P60709 360 373 ACTB;POTEF;ACTG1;POTEI;POTEJ;POTEE;POTEKP Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 3 0.025282 46.797 By MS/MS 5 0 1 1 0 0 0 0 10878 966;1069;1501;499 11458 47097 39251 39251 1 0 0 0 QEYEQLIAK VAPGKDLTKTLNDMRQEYEQLIAKNRKDIE TLNDMRQEYEQLIAKNRKDIENQYETQITQ R Q E A K N 1 0 0 0 0 2 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1120.5764 P35527;CON__P35527 P35527 328 336 KRT9 Keratin, type I cytoskeletal 9 yes no 2 5.1473E-66 229.44 By MS/MS By MS/MS By MS/MS 5.58 2.82 2 3 2 3 3 3 2 3 2 3 10 6 10 3738100000 2482100000 74255000 1181700000 + 10879 750 11459 47098;47099;47100;47101;47102;47103;47104;47105;47106;47107;47108;47109;47110;47111;47112;47113;47114;47115;47116;47117;47118;47119;47120;47121;47122;47123 39252;39253;39254;39255;39256;39257;39258;39259;39260;39261;39262;39263;39264;39265;39266;39267;39268;39269;39270;39271;39272;39273;39274;39275;39276;39277;39278 39254 27 2449900000 34070000 411050000 QEYVDYSESAK DKHGKPTDSTPATWKQEYVDYSESAKKEVV ATWKQEYVDYSESAKKEVVAEVVKAPQVVA K Q E A K K 1 0 0 1 0 1 2 0 0 0 0 1 0 0 0 2 0 0 2 1 0 0 11 0 1317.5725 O60832 O60832 414 424 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.00032801 128.03 By MS/MS 3.5 0.5 1 1 2 20546000 0 0 20546000 10880 235 11460 47124;47125 39279 39279 1 0 0 3560500 QFASQANVVGPWIQTK LEEQSKQQSNEHLRRQFASQANVVGPWIQT FASQANVVGPWIQTKMEEIGRISIEMNGTL R Q F T K M 2 0 1 0 0 3 0 1 0 1 0 1 0 1 1 1 1 1 0 2 0 0 16 0 1772.921 O43707 O43707 653 668 ACTN4 Alpha-actinin-4 yes yes 2;3 6.323E-05 142.51 By MS/MS By MS/MS 2.25 0.433 3 1 3 1 46356000 0 34359000 11997000 10881 210 11461 47126;47127;47128;47129 39280;39281;39282;39283;39284 39280 5 0 15401000 2711100 QFFVAVER RILVKRDELTLEGIKQFFVAVEREEWKFDT LTLEGIKQFFVAVEREEWKFDTLCDLYDTL K Q F E R E 1 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 8 0 994.52362 P38919 P38919 253 260 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.010451 93.195 By MS/MS 5 0 1 1 54636000 0 0 54636000 10882 775 11462 47130 39285 39285 1 0 0 7620700 QFGAQANVIGPWIQTK TEEHARQQHNERLRKQFGAQANVIGPWIQT FGAQANVIGPWIQTKMEEIGRISIEMHGTL K Q F T K M 2 0 1 0 0 3 0 2 0 2 0 1 0 1 1 0 1 1 0 1 0 0 16 0 1756.9261 P12814 P12814 634 649 ACTN1 Alpha-actinin-1 yes yes 2 6.7913E-05 108.68 By MS/MS 2 0 1 1 8012200 0 8012200 0 10883 540 11463 47131 39286 39286 1 0 3608000 0 QFGFIVLTTSAGIMDHEEAR LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD VLTTSAGIMDHEEARRKHTGGKILGFFF__ R Q F A R R 2 1 0 1 0 1 2 2 1 2 1 0 1 2 0 1 2 0 0 1 0 0 20 0 2221.0838 P62244 P62244 98 117 RPS15A 40S ribosomal protein S15a yes yes 3 3.9993E-22 174.68 By MS/MS 8 0 1 1 15875000 0 0 15875000 10884 1009 11464 47132 39287 39287 1 0 0 2433800 QFIENGSEFAQK AKAGKGMHGGVPGGKQFIENGSEFAQKLLK GGKQFIENGSEFAQKLLKKFSLLKPWA___ K Q F Q K L 1 0 1 0 0 2 2 1 0 1 0 1 0 2 0 1 0 0 0 0 0 0 12 0 1396.6623 Q9GZZ8 Q9GZZ8 115 126 LACRT Extracellular glycoprotein lacritin yes yes 2 2.1499E-19 195.79 By MS/MS 6.17 3.02 1 1 1 1 1 1 1 1 2 2 12 677630000 677630000 0 0 10885 1956 11465 47133;47134;47135;47136;47137;47138;47139;47140;47141;47142;47143;47144 39288;39289;39290;39291;39292;39293;39294;39295;39296;39297;39298;39299 39293 12 640360000 0 0 QFLEVELDQAR AEENRGLGERANLGRQFLEVELDQAREKYV NLGRQFLEVELDQAREKYVQELAAVRADAE R Q F A R E 1 1 0 1 0 2 2 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 11 0 1346.683 Q14980 Q14980 1463 1473 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 3.5013E-05 147.4 By MS/MS By MS/MS 1 0 2 1 1 17882000 0 3114600 14767000 10886 1327 11466 47145;47146 39300;39301 39301 2 0 1522400 3181800 QFLPFLQR IHRVADISGDTQKAKQFLPFLQRAGRSEAV GDTQKAKQFLPFLQRAGRSEAVVEYVFSGS K Q F Q R A 0 1 0 0 0 2 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 8 0 1047.5866 Q7KZF4 Q7KZF4 516 523 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00021141 138.85 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 36702000 0 16984000 19718000 10887 1518 11467 47147;47148;47149;47150 39302;39303 39303 2 0 7648000 4392800 QFLSQFEMQSR RELHGQNPVVTPCNKQFLSQFEMQSRKTTQ PCNKQFLSQFEMQSRKTTQSGQMSGEGKAG K Q F S R K 0 1 0 0 0 3 1 0 0 0 1 0 1 2 0 2 0 0 0 0 0 0 11 0 1399.6554 Q16630 Q16630 162 172 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes yes 2 4.0635E-14 183.67 By MS/MS By MS/MS 3 0 2 1 1 19263000 0 4609900 14653000 10888 1393 11468 47151;47152 39304;39305 39304 2 0 1965200 2842000 QFLTQLMQK DVVKLTAQFVARNGRQFLTQLMQKEQRNYQ VARNGRQFLTQLMQKEQRNYQFDFLRPQHS R Q F Q K E 0 0 0 0 0 3 0 0 0 0 2 1 1 1 0 0 1 0 0 0 0 0 9 0 1135.606 Q15459 Q15459 180 188 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.02141 81.296 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 14879000 0 3558200 11321000 10889 1369 11469 47153;47154;47155 39306;39307 39307 2 0 1602300 2544600 QFMAETQFTSGEK YTEQSEVESTEYVNRQFMAETQFTSGEKEQ NRQFMAETQFTSGEKEQVDEWTVETVEVVN R Q F E K E 1 0 0 0 0 2 2 1 0 0 0 1 1 2 0 1 2 0 0 0 0 0 13 0 1502.6711 Q14444 Q14444 298 310 CAPRIN1 Caprin-1 yes yes 2 0.03107 74.751 By MS/MS 2 0 1 1 7250800 0 0 7250800 10890 1301 11470 47156 39308 39308 1 0 0 1638500 QFPNASLIGLTATATNHVLTDAQK HDFRPDYKALGILKRQFPNASLIGLTATAT LTATATNHVLTDAQKILCIEKCFTFTASFN R Q F Q K I 4 0 2 1 0 2 0 1 1 1 3 1 0 1 1 1 4 0 0 1 0 0 24 0 2510.3129 P46063 P46063 244 267 RECQL ATP-dependent DNA helicase Q1 yes yes 3 0.00013973 64.488 By MS/MS 3 0 1 1 2363100 0 2363100 0 10891 823 11471 47157 39309;39310;39311 39310 3 0 1007400 0 QFSFPLSSEPFQGSYK RIAQWQSFQLEGGLKQFSFPLSSEPFQGSY FSFPLSSEPFQGSYKVVVQKKSGGRTEHPF K Q F Y K V 0 0 0 0 0 2 1 1 0 0 1 1 0 3 2 4 0 0 1 0 0 0 16 0 1847.873 P01023 P01023 189 204 A2M Alpha-2-macroglobulin yes yes 2 3.3876E-05 128.54 By MS/MS 9.5 0.5 1 1 2 3255400 3255400 0 0 10892 370 11472 47158;47159 39312 39312 1 2661200 0 0 QFSQYIK YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM EDEDAYKKQFSQYIKNSVTPDMMEEMYKKA K Q F I K N 0 0 0 0 0 2 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 0 7 0 912.47052 P46777 P46777 222 228 RPL5 60S ribosomal protein L5 yes yes 2 0.021396 100.07 By MS/MS By MS/MS 6 0 2 1 1 48967000 0 20593000 28374000 10893 828 11473 47160;47161 39313;39314 39313 2 0 7128600 4245100 QFSSSYLSR ______________________________ ______________________________ R Q F S R S 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 4 0 0 1 0 0 0 9 0 1073.5142 P35527;CON__P35527 P35527 5 13 KRT9 Keratin, type I cytoskeletal 9 yes no 2 0.00072238 113.71 By MS/MS By matching By MS/MS 5.06 2.84 2 1 3 3 1 2 1 1 1 2 8 3 6 813520000 580800000 25808000 206910000 + 10894 750 11474 47162;47163;47164;47165;47166;47167;47168;47169;47170;47171;47172;47173;47174;47175;47176;47177;47178 39315;39316;39317;39318;39319;39320;39321;39322;39323;39324;39325 39324 11 733810000 9792100 93552000 QFSYLIENMAR MAYRKGIILFISRNRQFSYLIENMARDCGE SRNRQFSYLIENMARDCGEYAHTRYFRGGM R Q F A R D 1 1 1 0 0 1 1 0 0 1 1 0 1 1 0 1 0 0 1 0 0 0 11 0 1370.6653 Q9Y399 Q9Y399 150 160 MRPS2 28S ribosomal protein S2, mitochondrial yes yes 2 0.00032809 128.6 By matching By MS/MS 6.67 0.471 1 2 1 2 14533000 0 1182300 13350000 10895 2260 11475 47179;47180;47181 39326;39327 39326 2 0 678870 2180400 QFTSSSSIK ______________________________ MTTSIRQFTSSSSIKGSSGLGGGSSRTSCR R Q F I K G 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 4 1 0 0 0 0 0 9 0 983.49238 Q04695;CON__Q04695 Q04695 7 15 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.062176 67.993 By MS/MS 5 0 1 1 5733900 0 5733900 0 + 10896 73 11476 47182 39328 39328 1 0 1478000 0 QFTSSSSMK ______________________________ MTTCSRQFTSSSSMKGSCGIGGGIGGGSSR R Q F M K G 0 0 0 0 0 1 0 0 0 0 0 1 1 1 0 4 1 0 0 0 0 0 9 0 1001.4488 CON__P02533;P02533;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8 CON__P02533 7 15 KRT14;KRT16 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 0.0083398 91.069 By MS/MS 5.55 2.74 1 1 1 1 1 2 1 1 1 1 11 19237000 19237000 0 0 + 10897 35;53 11477 47183;47184;47185;47186;47187;47188;47189;47190;47191;47192;47193 39329;39330;39331;39332;39333;39334 39330 6 22521000 0 0 QFVDGPPGPVK TFKLKKREKRRSTSRQFVDGPPGPVKKTRS STSRQFVDGPPGPVKKTRSIGSAVDQGNES R Q F V K K 0 0 0 1 0 1 0 2 0 0 0 1 0 1 3 0 0 0 0 2 0 0 11 0 1139.5975 Q9H0H5 Q9H0H5 189 199 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 0.03799 76.679 By MS/MS 3 0 1 1 1857600 0 1857600 0 10898 1963 11478 47194 39335 39335 1 0 791900 0 QFVTPADVVSGNPK RAESMLQQADKLGCRQFVTPADVVSGNPKL RQFVTPADVVSGNPKLNLAFVANLFNKYPA R Q F P K L 1 0 1 1 0 1 0 1 0 0 0 1 0 1 2 1 1 0 0 3 0 0 14 0 1457.7514 P13797;Q14651 P13797 351 364 PLS3;PLS1 Plastin-3;Plastin-1 yes no 2 0.00080918 113.03 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 14197000 0 6303400 7893500 10899 551 11479 47195;47196;47197 39336;39337 39336 1 0 2737300 1531000 QGANINEIR ELTIPNNLIGCIIGRQGANINEIRQMSGAQ GCIIGRQGANINEIRQMSGAQIKIANPVEG R Q G I R Q 1 1 2 0 0 1 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 9 0 1013.5254 Q15365 Q15365 298 306 PCBP1 Poly(rC)-binding protein 1 yes yes 2 0.029386 85.161 By MS/MS 6 0 1 1 0 0 0 0 10900 1356 11480 47198 39338 39338 1 0 0 0 QGAPGQGGGGGLSHEDTLALLEGLVSR NWQKEAMRLERLELRQGAPGQGGGGGLSHE SHEDTLALLEGLVSRREAALKEDFRRETAA R Q G S R R 2 1 0 1 0 2 2 8 1 0 5 0 0 0 1 2 1 0 0 1 0 0 27 0 2575.299 Q9UH99 Q9UH99 312 338 SUN2 SUN domain-containing protein 2 yes yes 3 6.145E-05 52.685 By MS/MS 3 0 1 1 9422500 0 0 9422500 10901 2148 11481 47199 39339 39339 1 0 0 1827500 QGFGELLQAVPLADSFR PKGNKKNAGFTPQERQGFGELLQAVPLADS FGELLQAVPLADSFRHLYPNTPYAYTFWTY R Q G F R H 2 1 0 1 0 2 1 2 0 0 3 0 0 2 1 1 0 0 0 1 0 0 17 0 1846.9577 P27695 P27695 238 254 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 2 9.3948E-06 117.93 By MS/MS By MS/MS 5 0.816 1 1 1 2 1 8754700 0 3942700 4812000 10902 680 11482 47200;47201;47202 39340;39341 39341 2 0 1339200 671190 QGGDLGWMTR RFNEVAAQYSEDKARQGGDLGWMTRGSMVG EDKARQGGDLGWMTRGSMVGPFQEAAFALP R Q G T R G 0 1 0 1 0 1 0 3 0 0 1 0 1 0 0 0 1 1 0 0 0 0 10 0 1119.5131 Q9Y237 Q9Y237 78 87 PIN4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 yes yes 2 0.02295 81.338 By MS/MS By matching 8 0 2 1 1 5425100 0 3593400 1831700 10903 2230 11483 47203;47204 39342 39342 1 0 1634900 280810 QGGDVLQNEEGETTSHLMGMFYR IDASMSIYQFLIAVRQGGDVLQNEEGETTS EEGETTSHLMGMFYRTIRMMENGIKPVYVF R Q G Y R T 0 1 1 1 0 2 3 4 1 0 2 0 2 1 0 1 2 0 1 1 0 0 23 0 2598.1479 P39748 P39748 48 70 FEN1 Flap endonuclease 1 yes yes 3 3.0887E-36 193.85 By MS/MS 5 0 1 1 29818000 0 0 29818000 10904 780 11484 47205 39343 39343 1 0 0 4159100 QGGGGGGGSVPGIER EILSNALKRGEIIAKQGGGGGGGSVPGIER QGGGGGGGSVPGIERMGPGIDRLGGAGMER K Q G E R M 0 1 0 0 0 1 1 8 0 1 0 0 0 0 1 1 0 0 0 1 0 0 15 0 1283.6218 P52272 P52272 389 403 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 0.00065215 102.66 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 121630000 0 38318000 83313000 10905 902 11485 47206;47207;47208;47209;47210;47211;47212 39344;39345;39346;39347;39348;39349 39346 6 0 15488000 15750000 QGGLGPMNIPLVSDPK DSHFCHLAWVNTPKKQGGLGPMNIPLVSDP GGLGPMNIPLVSDPKRTIAQDYGVLKADEG K Q G P K R 0 0 1 1 0 1 0 3 0 1 2 1 1 0 3 1 0 0 0 1 0 0 16 0 1621.8498 Q06830 Q06830 94 109 PRDX1 Peroxiredoxin-1 yes yes 2 0.0038303 84.365 By MS/MS 7 0 1 1 35292000 0 0 35292000 10906 1173 11486 47213 39350 39350 1 0 0 6262300 QGGPTYYIDTNALR DDGSTLMEIDGDKGKQGGPTYYIDTNALRV KQGGPTYYIDTNALRVPRENMEAISPLKNG K Q G L R V 1 1 1 1 0 1 0 2 0 1 1 0 0 0 1 0 2 0 2 0 0 0 14 0 1567.7631 O96019 O96019 63 76 ACTL6A Actin-like protein 6A yes yes 2 0.02747 70.728 By MS/MS 4 0 1 1 6462400 0 0 6462400 10907 354 11487 47214 39351 39351 1 0 0 1055500 QGHEAYVEMAR CPFVPQMGDEVYYFRQGHEAYVEMARKNKI YYFRQGHEAYVEMARKNKIYSINPKKQPWH R Q G A R K 2 1 0 0 0 1 2 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 11 0 1289.5823 Q8WWQ0 Q8WWQ0 969 979 PHIP PH-interacting protein yes yes 3 0.014287 67.456 By MS/MS 1.5 0.5 1 1 2 8111000 0 0 8111000 10908 1690 11488 47215;47216 39352 39352 1 0 0 1763900 QGIVTPIEAQTR QAMGWKEGSGLGRKKQGIVTPIEAQTRVRG RKKQGIVTPIEAQTRVRGSGLGARGSSYGV K Q G T R V 1 1 0 0 0 2 1 1 0 2 0 0 0 0 1 0 2 0 0 1 0 0 12 0 1311.7147 P98175 P98175 882 893 RBM10 RNA-binding protein 10 yes yes 2 0.018568 80.758 By MS/MS 2 0 1 1 0 0 0 0 10909 1117 11489 47217 39353 39353 1 0 0 0 QGLLPVLESFK STLSEKAKPALEDLRQGLLPVLESFKVSFL EDLRQGLLPVLESFKVSFLSALEEYTKKLN R Q G F K V 0 0 0 0 0 1 1 1 0 0 3 1 0 1 1 1 0 0 0 1 0 0 11 0 1229.702 P02647 P02647 240 250 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.0053176 100.48 By MS/MS 9.5 0.5 1 1 2 44429000 44429000 0 0 10910 389 11490 47218;47219 39354;39355 39355 2 26866000 0 0 QGLLPVLESLK KALGEKAKPVLEDLRQGLLPVLESLKVSIL EDLRQGLLPVLESLKVSILAAIDEASKKLN R Q G L K V 0 0 0 0 0 1 1 1 0 0 4 1 0 0 1 1 0 0 0 1 0 0 11 0 1195.7176 CON__P15497 CON__P15497 238 248 yes yes 2 0.007368 96.342 By matching By MS/MS 7 1.67 1 2 1 1 2 3 247270000 0 7201700 240070000 + 10911 59 11491 47220;47221;47222;47223;47224 39356;39357;39358;39359 39359 4 0 3898200 45982000 QGLVPLVNSVHGSQLGNAEDLQK EELKAKISAKAEELRQGLVPLVNSVHGSQL SVHGSQLGNAEDLQKSLAELSSRLDQQVED R Q G Q K S 1 0 2 1 0 3 1 3 1 0 4 1 0 0 1 2 0 0 0 3 0 0 23 0 2402.2554 CON__Q32PJ2 CON__Q32PJ2 265 287 yes yes 3 5.314E-15 116.94 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 64516000 18646000 0 45870000 + 10912 81 11492 47225;47226;47227;47228;47229;47230 39360;39361;39362;39363;39364;39365 39360 6 22290000 0 7052100 QGNLSSQVPLKR QALTEIQEFISFISKQGNLSSQVPLKRLLN ISKQGNLSSQVPLKRLLNTWTNRYPDAKMD K Q G K R L 0 1 1 0 0 2 0 1 0 0 2 1 0 0 1 2 0 0 0 1 0 0 12 1 1325.7415 P78527 P78527 3148 3159 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.062394 34.386 By MS/MS 1 0 1 1 0 0 0 0 10913 1089 11493 47231 39366 39366 1 0 0 0 QGPPHINHDDPSLVPNVPYFDLPAGLMAPLVK PPPHGFNGQPPHMRRQGPPHINHDDPSLVP PYFDLPAGLMAPLVKLEDHEYKPLDPKDIR R Q G V K L 2 0 2 3 0 1 0 2 2 1 4 1 1 1 7 1 0 0 1 3 0 0 32 0 3447.7649 Q8IWX8 Q8IWX8 629 660 CHERP Calcium homeostasis endoplasmic reticulum protein yes yes 4 0.00027483 42.181 By MS/MS By MS/MS 2 0 2 1 1 4963500 0 2318200 2645300 10914 1577 11494 47232;47233 39367;39368 39368 2 0 1043900 597790 QGQETAVAPSLVAPALNKPK DANYDGKDYDPVAARQGQETAVAPSLVAPA AVAPSLVAPALNKPKKPLTSSSAAPQRPIS R Q G P K K 4 0 1 0 0 2 1 1 0 0 2 2 0 0 3 1 1 0 0 2 0 0 20 1 2018.116 Q15691 Q15691 131 150 MAPRE1 Microtubule-associated protein RP/EB family member 1 yes yes 2;3 5.0035E-07 109.6 By MS/MS By MS/MS 6 0 3 1 2 31086000 0 4898400 26187000 10915 1379 11495 47234;47235;47236 39369;39370;39371 39370 3 0 1695700 3917900 QGRTLYGFGG RKTVTAMDVVYALKRQGRTLYGFGG_____ YALKRQGRTLYGFGG_______________ R Q G G G - 0 1 0 0 0 1 0 4 0 0 1 0 0 1 0 0 1 0 1 0 0 0 10 1 1054.5196 P62805 P62805 94 103 HIST1H4A Histone H4 yes yes 2 0.0049605 131.06 By MS/MS 9 0 1 1 20227000 0 0 20227000 10916 1033 11496 47237 39372 39372 1 0 0 6461500 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVKR PAPMAPPRAPGPLSKQGSGSSQPMEVQEGY DPYSSAEPHVSGVKRSRSGEGEVSGLMRKV K Q G K R S 1 1 0 2 0 3 3 7 1 0 0 1 1 1 3 7 0 0 2 3 0 0 36 1 3712.6336 Q13263 Q13263 435 470 TRIM28 Transcription intermediary factor 1-beta yes yes 4 3.9876E-26 93.566 By MS/MS 2 0 1 1 9537400 0 9537400 0 10917 1235 11497 47238 39373 39373 1 0 4294800 0 QGTEIDGR EFKTEADAEKTFEEKQGTEIDGRSISLYYT EKTFEEKQGTEIDGRSISLYYTGEKGQNQD K Q G G R S 0 1 0 1 0 1 1 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 8 0 874.41446 P19338 P19338 450 457 NCL Nucleolin yes yes 2 0.044768 74.255 By MS/MS 3.5 0.5 1 1 2 3396900 0 0 3396900 10918 604 11498 47239;47240 39374;39375;39376 39376 3 0 0 656810 QGTPLIAFSLLPHEQK LHVSEVPVSVVECFRQGTPLIAFSLLPHEQ GTPLIAFSLLPHEQKMSVLNMVVRRDPGNT R Q G Q K M 1 0 0 0 0 2 1 1 1 1 3 1 0 1 2 1 1 0 0 0 0 0 16 0 1777.9727 Q2NL82 Q2NL82 575 590 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 3 0.071453 28.112 By MS/MS 2 0 1 1 1834000 0 1834000 0 10919 1406 11499 47241 39377 39377 1 0 825860 0 QGTQYTFSSIER GTTTTRSFDFEIETKQGTQYTFSSIEREEY ETKQGTQYTFSSIEREEYGKLFDFVNAKKL K Q G E R E 0 1 0 0 0 2 1 1 0 1 0 0 0 1 0 2 2 0 1 0 0 0 12 0 1415.6681 Q08945 Q08945 397 408 SSRP1 FACT complex subunit SSRP1 yes yes 2 1.8247E-25 201.84 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 62984000 0 6735000 56249000 10920 1186 11500 47242;47243;47244 39378;39379;39380 39379 3 0 2871100 10555000 QGTTPPIWHLTDK NAVLIDMERQGDVYRQGTTPPIWHLTDKKR YRQGTTPPIWHLTDKKRERMQIKRNTNSVP R Q G D K K 0 0 0 1 0 1 0 1 1 1 1 1 0 0 2 0 3 1 0 0 0 0 13 0 1492.7674 P55265 P55265 346 358 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 3 0.061171 39.815 By matching By MS/MS 2.5 0.5 1 1 1 1 13234000 0 4608900 8625100 10921 941 11501 47245;47246 39381 39381 1 0 2075400 1672900 QGVDADINGLR LDDFRIKFEMEQNLRQGVDADINGLRQVLD QNLRQGVDADINGLRQVLDNLTMEKSDLEM R Q G L R Q 1 1 1 2 0 1 0 2 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1156.5836 P35527;CON__P35527 P35527 251 261 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.2573E-107 261.6 By MS/MS By MS/MS By MS/MS 5.28 2.95 4 3 3 2 3 3 3 3 2 3 10 8 11 4155200000 3016600000 103580000 1035000000 + 10922 750 11502 47247;47248;47249;47250;47251;47252;47253;47254;47255;47256;47257;47258;47259;47260;47261;47262;47263;47264;47265;47266;47267;47268;47269;47270;47271;47272;47273;47274;47275 39382;39383;39384;39385;39386;39387;39388;39389;39390;39391;39392;39393;39394;39395;39396;39397;39398;39399;39400;39401;39402;39403;39404;39405;39406;39407;39408;39409;39410;39411 39391 30 2977500000 58009000 361870000 QGYNMLNLLIHR STKLDWVEVGLQVCRQGYNMLNLLIHRKNL VCRQGYNMLNLLIHRKNLNYLHLDYNFNLK R Q G H R K 0 1 2 0 0 1 0 1 1 1 3 0 1 0 0 0 0 0 1 0 0 0 12 0 1470.7766 Q6P2Q9 Q6P2Q9 499 510 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.00014282 120.63 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 12538000 0 3227100 9310700 10923 1490 11503 47276;47277;47278 39412;39413 39413 2 0 1577300 2017100 QGYVLSSIEGR SLKYQTRCIRAFPNKQGYVLSSIEGRVAVE FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK K Q G G R V 0 1 0 0 0 1 1 2 0 1 1 0 0 0 0 2 0 0 1 1 0 0 11 0 1207.6197 O43684 O43684 192 202 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 0.0096681 91.855 By matching By matching By MS/MS 5.67 0.471 1 2 1 1 1 14944000 1191100 4340000 9413100 10924 209 11504 47279;47280;47281 39414 39414 1 954240 1502400 1408300 QHHPPYHQQHHQGPPPGGPGGR PKPPHRGGGEPRGGRQHHPPYHQQHHQGPP QQHHQGPPPGGPGGRSEEKISDSEGFKANL R Q H G R S 0 1 0 0 0 4 0 5 5 0 0 0 0 0 6 0 0 0 1 0 0 0 22 0 2402.1278 P23246 P23246 246 267 SFPQ Splicing factor, proline- and glutamine-rich yes yes 4;5 3.554E-12 109.87 By MS/MS By MS/MS 2.42 1.23 6 4 5 3 1 6 13 80949000 0 30330000 50619000 10925 638 11505 47282;47283;47284;47285;47286;47287;47288;47289;47290;47291;47292;47293;47294;47295;47296;47297;47298;47299;47300 39415;39416;39417;39418;39419;39420;39421;39422;39423;39424;39425;39426;39427;39428;39429;39430;39431;39432;39433;39434;39435;39436;39437;39438;39439;39440;39441;39442 39437 28 0 13557000 10206000 QHLYIFPWGGH AILPNVLICLASRAKQHLYIFPWGGH____ SRAKQHLYIFPWGGH_______________ K Q H G H - 0 0 0 0 0 1 0 2 2 1 1 0 0 1 1 0 0 1 1 0 0 0 11 0 1353.6618 Q7Z7L1 Q7Z7L1 891 901 SLFN11 Schlafen family member 11 yes yes 3 0.019985 63.216 By MS/MS 2 0 1 1 2402200 0 0 2402200 10926 1539 11506 47301 39443 39443 1 0 0 542850 QHSSTSPFPTSTPLR PSSTSSPEGPPAPPKQHSSTSPFPTSTPLR QHSSTSPFPTSTPLRRITKKFVKGSTEKNK K Q H L R R 0 1 0 0 0 1 0 0 1 0 1 0 0 1 3 4 3 0 0 0 0 0 15 0 1641.8111 Q13111 Q13111 305 319 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3 0.052822 38.376 By MS/MS 2 0 1 1 6105200 0 0 6105200 10927 1220 11507 47302 39444 39444 1 0 0 1379700 QHTTTNVFHFTFMSEK IQVRVHSEVASLQEKQHTTTNVFHFTFMSE HTTTNVFHFTFMSEKEVPLVFPKTYGESML K Q H E K E 0 0 1 0 0 1 1 0 2 0 0 1 1 3 0 1 4 0 0 1 0 0 16 0 1953.9043 Q9Y305 Q9Y305 384 399 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 3 0.032779 42.277 By MS/MS 4.5 0.5 1 1 2 9533600 0 0 9533600 10928 2256 11508 47303;47304 39445 39445 1 0 0 1407800 QIATLHAQVADMK EQLEEEEEAKHNLEKQIATLHAQVADMKKK EKQIATLHAQVADMKKKMEDSVGCLETAEE K Q I M K K 3 0 0 1 0 2 0 0 1 1 1 1 1 0 0 0 1 0 0 1 0 0 13 0 1424.7446 P35579 P35579 1358 1370 MYH9 Myosin-9 yes yes 2;3 1.3648E-127 281.17 By MS/MS By matching 1.6 0.49 2 3 3 2 190000000 0 178240000 11763000 10929 752 11509 47305;47306;47307;47308;47309 39446;39447;39448 39446 3 0 87121000 2658100 QIATLHAQVADMKK EQLEEEEEAKHNLEKQIATLHAQVADMKKK KQIATLHAQVADMKKKMEDSVGCLETAEEV K Q I K K K 3 0 0 1 0 2 0 0 1 1 1 2 1 0 0 0 1 0 0 1 0 0 14 1 1552.8395 P35579 P35579 1358 1371 MYH9 Myosin-9 yes yes 2;3 0.027322 64.439 By MS/MS By matching 1.4 0.49 3 2 4 1 65195000 0 64408000 787220 10930 752 11510;11511 47310;47311;47312;47313;47314 39449;39450;39451 39449 358 3 0 31288000 177900 QIDAPGDPFPLNPR NRLLHIVGYGDFQMKQIDAPGDPFPLNPRG KQIDAPGDPFPLNPRGIKPQKDPDMAMEIC K Q I P R G 1 1 1 2 0 1 0 1 0 1 1 0 0 1 4 0 0 0 0 0 0 0 14 0 1535.7732 Q2NL82 Q2NL82 301 314 TSR1 Pre-rRNA-processing protein TSR1 homolog yes yes 2 0.004256 90.306 By MS/MS 2 0 1 1 4383700 0 4383700 0 10931 1406 11512 47315 39452 39452 1 0 1974100 0 QIDFPLR SREQGHAPGGTSQARQIDFPLRILVPTQFV PGGTSQARQIDFPLRILVPTQFVGAIIGKE R Q I L R I 0 1 0 1 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 7 0 887.4865 Q9Y6M1 Q9Y6M1 191 197 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 0.028226 94.163 By matching By MS/MS By matching 3.25 0.829 1 1 2 1 2 1 14486000 1621800 11342000 1522000 10932 2315 11513 47316;47317;47318;47319 39453;39454 39454 2 1954000 4347000 248580 QIDQFLVVAR MEMKVWDPDNPLTDRQIDQFLVVARAVGTF PLTDRQIDQFLVVARAVGTFARALDCSSSI R Q I A R A 1 1 0 1 0 2 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 10 0 1187.6663 O94776;Q13330;Q9BTC8 O94776 189 198 MTA2;MTA1;MTA3 Metastasis-associated protein MTA2;Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 no no 2 0.004302 99.442 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 23919000 0 7739600 16180000 10933 298;1239 11514 47320;47321;47322 39455;39456 39455 2 0 3299400 3017400 QIEELKGQEVSPK LLFPLTAQHENFRKKQIEELKGQEVSPKVY KKQIEELKGQEVSPKVYFMKQTIGNSCGTI K Q I P K V 0 0 0 0 0 2 3 1 0 1 1 2 0 0 1 1 0 0 0 1 0 0 13 1 1483.7882 P09936 P09936 66 78 UCHL1 Ubiquitin carboxyl-terminal hydrolase isozyme L1 yes yes 2 0.0020512 132.25 By MS/MS 7 0 1 1 11384000 0 0 11384000 10934 494 11515 47323 39457 39457 1 0 0 2019900 QIEEQTIK ERIEREKEELMERLKQIEEQTIKAQKELEE ELMERLKQIEEQTIKAQKELEEQTRKALEL K Q I I K A 0 0 0 0 0 2 2 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 P35241 P35241 353 360 RDX Radixin yes yes 2 0.059831 70.525 By MS/MS 3 0 1 1 5896800 0 0 5896800 10935 742 11516 47324 39458 39458 1 0 0 1143700 QIEIQFAQGDR EDALHNLDRKWICGRQIEIQFAQGDRKTPN ICGRQIEIQFAQGDRKTPNQMKAKEGRNVY R Q I D R K 1 1 0 1 0 3 1 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 11 0 1303.6521 O75494;Q8WXF0 O75494 80 90 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 2 1.4049E-19 193.38 By matching By MS/MS 6.33 0.471 2 1 1 2 40287000 0 5552400 34734000 10936 267;1694 11517 47325;47326;47327 39459;39460 39459 2 0 1922000 5592600 QIEIQFAQGDRK EDALHNLDRKWICGRQIEIQFAQGDRKTPN CGRQIEIQFAQGDRKTPNQMKAKEGRNVYS R Q I R K T 1 1 0 1 0 3 1 1 0 2 0 1 0 1 0 0 0 0 0 0 0 0 12 1 1431.747 O75494;Q8WXF0 O75494 80 91 SRSF10;SRSF12 Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12 no no 3 0.00035912 109.72 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 24421000 0 8958200 15463000 10937 267;1694 11518 47328;47329;47330 39461;39462;39463 39462 3 0 3101000 2608600 QIENVLR DGNNQLVIKGRFQQKQIENVLRRYIKEYVT IKGRFQQKQIENVLRRYIKEYVTCHTCRSP K Q I L R R 0 1 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 7 0 870.49232 P20042 P20042 266 272 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.033493 89.673 By MS/MS By MS/MS 4.83 1.57 1 1 2 1 1 3 3 52222000 0 16210000 36012000 10938 613 11519 47331;47332;47333;47334;47335;47336 39464;39465 39464 1 0 4728000 5169600 QIEYEYK RRKHETRLVEVDSGRQIEYEYKLAQALHEM LVEVDSGRQIEYEYKLAQALHEMREQHDAQ R Q I Y K L 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 7 0 971.46001 P20700 P20700 235 241 LMNB1 Lamin-B1 yes yes 2 0.016904 108.09 By MS/MS 3 0 1 1 31726000 0 31726000 0 10939 619 11520 47337 39466 39466 1 0 13525000 0 QIFLGGVDKR FPTQALNFAFKDKYKQIFLGGVDKRTQFWL KDKYKQIFLGGVDKRTQFWLYFAGNLASGG K Q I K R T 0 1 0 1 0 1 0 2 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 1 1131.64 P05141 P05141 97 106 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.030032 84.615 By MS/MS 6.5 0.5 1 1 2 19847000 0 0 19847000 10940 427 11521 47338;47339 39467 39467 1 0 0 3008900 QIFNGTFVK VSPKVRKVLQLLRLRQIFNGTFVKLNKASI QLLRLRQIFNGTFVKLNKASINMLRIVEPY R Q I V K L 0 0 1 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 1 0 0 9 0 1052.5655 P18124 P18124 116 124 RPL7 60S ribosomal protein L7 yes yes 2 0.01992 82.279 By matching By MS/MS By MS/MS 5.67 0.471 1 2 1 1 1 147940000 1002600 42402000 104530000 10941 594 11522 47340;47341;47342 39468;39469 39468 2 803240 14678000 15639000 QIGNVAALPGIVHR ACRGGGVGGFLPAMKQIGNVAALPGIVHRS KQIGNVAALPGIVHRSIGLPDVHSGYGFAI K Q I H R S 2 1 1 0 0 1 0 2 1 2 1 0 0 0 1 0 0 0 0 2 0 0 14 0 1443.831 Q9Y3I0 Q9Y3I0 68 81 RTCB tRNA-splicing ligase RtcB homolog yes yes 2;3 7.4914E-05 138.08 By MS/MS By MS/MS 3.8 0.4 1 4 2 3 83042000 0 47887000 35155000 10942 2276 11523 47343;47344;47345;47346;47347 39470;39471;39472;39473 39470 4 0 15892000 5856000 QIGTFASVEQFWR PGRPTSSQSYEQNIKQIGTFASVEQFWRFY IKQIGTFASVEQFWRFYSHMVRPGDLTGHS K Q I W R F 1 1 0 0 0 2 1 1 0 1 0 0 0 2 0 1 1 1 0 1 0 0 13 0 1567.7783 O60573 O60573 84 96 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes yes 2 3.9928E-07 164.33 By matching By MS/MS 5.5 0.5 1 1 1 1 10682000 7258500 0 3423100 10943 229 11524 47348;47349 39474 39474 1 5815000 0 512130 QIIGPFQR LKLIEIENFKSYKGRQIIGPFQRFTAIIGP FKSYKGRQIIGPFQRFTAIIGPNGSGKSNL R Q I Q R F 0 1 0 0 0 2 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 8 0 957.5396 Q14683 Q14683 19 26 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0049003 100.07 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 24540000 0 6481300 18059000 10944 1312 11525 47350;47351 39475;39476 39475 2 0 2918600 3891100 QIIISEIISSLPSIVNDK LLAAFDCIDDTKLVKQIIISEIISSLPSIV ISEIISSLPSIVNDKYGRKVLLYLLSPRDP K Q I D K Y 0 0 1 1 0 1 1 0 0 6 1 1 0 0 1 4 0 0 0 1 0 0 18 0 1968.1143 Q15397 Q15397 419 436 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2;3 0.00026754 81.594 By MS/MS 3.33 0.471 2 1 3 4454600 0 0 4454600 10945 1362 11526 47352;47353;47354 39477;39478 39477 2 0 0 846120 QIILEKEETEELKR LLPSDTKRSQIYGSRQIILEKEETEELKRF RQIILEKEETEELKRFDDPGLMLMGFKPLV R Q I K R F 0 1 0 0 0 1 5 0 0 2 2 2 0 0 0 0 1 0 0 0 0 0 14 2 1756.9571 P12956 P12956 326 339 XRCC6 X-ray repair cross-complementing protein 6 yes yes 3;4 0.00012979 124.3 By matching By MS/MS By MS/MS 2.5 0.5 3 3 1 2 3 51227000 5577700 8423500 37226000 10946 541 11527 47355;47356;47357;47358;47359;47360 39479;39480;39481 39479 3 6720400 3632400 7378400 QIIQQNPSLLPALLQQIGR PLEFLRNQPQFQQMRQIIQQNPSLLPALLQ QNPSLLPALLQQIGRENPQLLQQISQHQEH R Q I G R E 1 1 1 0 0 5 0 1 0 3 4 0 0 0 2 1 0 0 0 0 0 0 19 0 2129.2321 P54727 P54727 290 308 RAD23B UV excision repair protein RAD23 homolog B yes yes 2;3 2.4426E-40 206.69 By MS/MS By MS/MS 3.67 0.471 2 4 2 4 37548000 0 7600700 29947000 10947 931 11528 47361;47362;47363;47364;47365;47366 39482;39483;39484;39485;39486 39486 5 0 2522400 5052600 QIIVDPLSFSEER GGGGELAYALNNFDKQIIVDPLSFSEERFR DKQIIVDPLSFSEERFRPSLEERLESIISG K Q I E R F 0 1 0 1 0 1 2 0 0 2 1 0 0 1 1 2 0 0 0 1 0 0 13 0 1531.7882 P35221 P35221 288 300 CTNNA1 Catenin alpha-1 yes yes 2 0.00026354 146.11 By MS/MS 2 0 1 1 3098400 0 0 3098400 10948 739 11529 47367 39487 39487 1 0 0 700170 QIIVEEAK KRKKAVLFCLSDDKRQIIVEEAKQILVGDI CLSDDKRQIIVEEAKQILVGDIGDTVEDPY R Q I A K Q 1 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 8 0 928.52295 Q9Y281 Q9Y281 46 53 CFL2 Cofilin-2 yes yes 2 0.033452 77.058 By MS/MS 7 0 1 1 6420300 0 0 6420300 10949 2237 11530 47368 39488 39488 1 0 0 1139200 QILDPAASVTGSR TGDSKSIKAFKESPKQILDPAASVTGSRRQ PKQILDPAASVTGSRRQLRTRKEKARALED K Q I S R R 2 1 0 1 0 1 0 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 13 0 1313.6939 P46013 P46013 2531 2543 MKI67 Antigen KI-67 yes yes 2 0.006499 96.229 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 5402700 0 5402700 0 10950 821 11531 47369;47370 39489;39490 39489 2 0 2432900 0 QILDWHFANLEFANATPLSTLSLK EANPPSDVYLSSRDRQILDWHFANLEFANA LEFANATPLSTLSLKHWDQDDDFEFTGSHL R Q I L K H 3 0 2 1 0 1 1 0 1 1 5 1 0 2 1 2 2 1 0 0 0 0 24 0 2728.4225 O60341 O60341 527 550 KDM1A Lysine-specific histone demethylase 1A yes yes 3 9.2409E-11 97.5 By MS/MS 2 0 1 1 2152000 0 0 2152000 10951 226 11532 47371 39491 39491 1 0 0 486300 QILMASGSTTFTK RVDDESMQRFHNRVRQILMASGSTTFTKIV VRQILMASGSTTFTKIVNKWNTALIGLMTY R Q I T K I 1 0 0 0 0 1 0 1 0 1 1 1 1 1 0 2 3 0 0 0 0 0 13 0 1383.7068 Q6P2Q9 Q6P2Q9 1246 1258 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00046023 121.9 By MS/MS 1 0 1 1 18968000 0 0 18968000 10952 1490 11533 47372 39492 39492 1 0 0 4087000 QILVGDIGDTVEDPYTSFVK CLSDDKRQIIVEEAKQILVGDIGDTVEDPY DIGDTVEDPYTSFVKLLPLNDCRYALYDAT K Q I V K L 0 0 0 3 0 1 1 2 0 2 1 1 0 1 1 1 2 0 1 3 0 0 20 0 2195.0998 Q9Y281 Q9Y281 54 73 CFL2 Cofilin-2 yes yes 2 4.2085E-07 104.17 By MS/MS 7.5 0.5 1 1 2 15709000 0 0 15709000 10953 2237 11534 47373;47374 39493 39493 1 0 0 2593300 QIMENAEINNIIK PLRGKILNVREASHKQIMENAEINNIIKIV HKQIMENAEINNIIKIVGLQYKKNYEDEDS K Q I I K I 1 0 3 0 0 1 2 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 13 0 1528.7919 P11388;Q02880 P11388 500 512 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.0055359 98.943 By matching By MS/MS By MS/MS 2.5 1.71 2 2 1 1 1 2 3 53025000 4177100 15858000 32990000 10954 524;1150 11535 47375;47376;47377;47378;47379;47380 39494;39495;39496 39494 3 4177100 7379900 6608200 QINDYVEK EAFTVNFGDTEEAKKQINDYVEKGTQGKIV DTEEAKKQINDYVEKGTQGKIVDLVKELDR K Q I E K G 0 0 1 1 0 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 8 0 1007.4924 P01009 P01009 180 187 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.055888 71.501 By MS/MS 9.5 0.5 1 1 2 34524000 34524000 0 0 10955 367 11536 47381;47382 39497 39497 1 22195000 0 0 QINIHNLSAFYDSELFR DTIEVPEKDLVDKARQINIHNLSAFYDSEL NIHNLSAFYDSELFRMNKFSHDLKRKMILQ R Q I F R M 1 1 2 1 0 1 1 0 1 2 2 0 0 2 0 2 0 0 1 0 0 0 17 0 2066.0221 P49736 P49736 871 887 MCM2 DNA replication licensing factor MCM2 yes yes 2;3 0.004325 71.548 By MS/MS By MS/MS 2 0 3 1 2 8819800 0 1920600 6899200 10956 864 11537 47383;47384;47385 39498;39499;39500 39499 3 0 864880 1559100 QININNPFVFK VYQTYVNAMNDKIRKQININNPFVFKHISN KIRKQININNPFVFKHISNLKSMDHFDDIG K Q I F K H 0 0 3 0 0 1 0 0 0 2 0 1 0 2 1 0 0 0 0 1 0 0 11 0 1332.719 Q9UKF6 Q9UKF6 296 306 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 2 0.0076758 95.741 By matching By MS/MS 2.5 0.5 1 1 1 1 7195000 4558800 2636200 0 10957 2178 11538 47386;47387 39501 39501 1 5492900 1123800 0 QINLSNIR IIVRGQPRGGPPPERQINLSNIRAGNLARR GGPPPERQINLSNIRAGNLARRAAATQPDA R Q I I R A 0 1 2 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 8 0 956.54033 Q7KZF4 Q7KZF4 48 55 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0017016 112.17 By MS/MS 2 0 1 1 21303000 0 21303000 0 10958 1518 11539 47388 39502 39502 1 0 9593000 0 QINWTVLYR NAKCESAFLSKRNPRQINWTVLYRRKHKKG SKRNPRQINWTVLYRRKHKKGQSEEIQKKR R Q I Y R R 0 1 1 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 1 0 0 9 0 1191.64 P83731 P83731 48 56 RPL24 60S ribosomal protein L24 yes yes 2 2.3997E-07 159.2 By MS/MS By MS/MS By MS/MS 7.3 1.42 1 2 3 2 1 1 1 4 5 396890000 6741600 55648000 334500000 10959 1106 11540 47389;47390;47391;47392;47393;47394;47395;47396;47397;47398 39503;39504;39505;39506;39507;39508;39509;39510;39511;39512;39513 39512 11 14530000 29760000 64215000 QIQAAYSILSEVQQAVSQGSSDSQILDLSNR EIDLQKMPLGKLSKRQIQAAYSILSEVQQA SQGSSDSQILDLSNRFYTLIPHDFGMKKPP R Q I N R F 3 1 1 2 0 6 1 1 0 3 3 0 0 0 0 7 0 0 1 2 0 0 31 0 3334.6641 P09874 P09874 705 735 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3;4 3.6761E-184 280.41 By MS/MS By MS/MS 1.71 0.7 3 3 1 2 5 358600000 0 1794500 356800000 10960 492 11541 47399;47400;47401;47402;47403;47404;47405 39514;39515;39516;39517;39518;39519;39520 39518 7 0 825270 80350000 QIQNQLEEMLK KELGDVLFQMAEVHRQIQNQLEEMLKSFHN EVHRQIQNQLEEMLKSFHNELLTQLEQKVE R Q I L K S 0 0 1 0 0 3 2 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 11 0 1372.7021 Q9UQB8 Q9UQB8 85 95 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes yes 2 0.0054973 100.02 By MS/MS 4 0 1 1 3632000 0 3632000 0 10961 2221 11542 47406 39521 39521 1 0 1205300 0 QIQVSWLR RKSKLICQATGFSPRQIQVSWLREGKQVGS ATGFSPRQIQVSWLREGKQVGSGVTTDQVQ R Q I L R E 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 1 0 1 0 1 0 0 8 0 1028.5767 P01871 P01871 143 150 IGHM Ig mu chain C region yes yes 2 0.0019472 110.14 By MS/MS 9.5 0.5 1 1 2 30790000 30790000 0 0 10962 385 11543 47407;47408 39522 39522 1 21646000 0 0 QISDGEREELNLTANR LLEMIHSIQNSQDMRQISDGEREELNLTAN ISDGEREELNLTANRLMGRTLTVEVSVETI R Q I N R L 1 2 2 1 0 1 3 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 16 1 1843.9024 O95816 O95816 71 86 BAG2 BAG family molecular chaperone regulator 2 yes yes 2;3 5.8174E-06 150.39 By MS/MS 7 0 2 2 53615000 0 0 53615000 10963 342 11544 47409;47410 39523;39524 39524 2 0 0 9513600 QISNLQQSISDAEQR RVIQRLRSEIDNVKKQISNLQQSISDAEQR QISNLQQSISDAEQRGENALKDAKNKLNDL K Q I Q R G 1 1 1 1 0 4 1 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 15 0 1715.8438 P04264;CON__P04264 P04264 418 432 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0 350.4 By MS/MS By MS/MS By MS/MS 5.52 2.88 8 7 8 9 5 8 9 8 7 8 39 19 19 9755700000 5526600000 441850000 3787300000 + 10964 413 11545 47411;47412;47413;47414;47415;47416;47417;47418;47419;47420;47421;47422;47423;47424;47425;47426;47427;47428;47429;47430;47431;47432;47433;47434;47435;47436;47437;47438;47439;47440;47441;47442;47443;47444;47445;47446;47447;47448;47449;47450;47451;47452;47453;47454;47455;47456;47457;47458;47459;47460;47461;47462;47463;47464;47465;47466;47467;47468;47469;47470;47471;47472;47473;47474;47475;47476;47477;47478;47479;47480;47481;47482;47483;47484;47485;47486;47487 39525;39526;39527;39528;39529;39530;39531;39532;39533;39534;39535;39536;39537;39538;39539;39540;39541;39542;39543;39544;39545;39546;39547;39548;39549;39550;39551;39552;39553;39554;39555;39556;39557;39558;39559;39560;39561;39562;39563;39564;39565;39566;39567;39568;39569;39570;39571;39572;39573;39574;39575;39576;39577;39578;39579;39580;39581;39582;39583;39584;39585;39586;39587;39588;39589;39590;39591;39592;39593;39594;39595;39596;39597;39598;39599;39600;39601;39602;39603;39604;39605;39606;39607;39608;39609;39610;39611;39612;39613;39614;39615;39616;39617;39618 39556 94 5193100000 264680000 1087400000 QISNLQQSISDAEQRGENALK RVIQRLRSEIDNVKKQISNLQQSISDAEQR QSISDAEQRGENALKDAKNKLNDLEDALQQ K Q I L K D 2 1 2 1 0 4 2 1 0 2 2 1 0 0 0 3 0 0 0 0 0 0 21 1 2328.167 P04264;CON__P04264 P04264 418 438 KRT1 Keratin, type II cytoskeletal 1 yes no 3 5.2687E-37 201.61 By MS/MS By MS/MS By MS/MS 4.75 2.68 3 1 2 2 1 2 1 3 1 8 6 2 298130000 184160000 61846000 52129000 + 10965 413 11546 47488;47489;47490;47491;47492;47493;47494;47495;47496;47497;47498;47499;47500;47501;47502;47503 39619;39620;39621;39622;39623;39624;39625;39626;39627;39628;39629;39630;39631;39632;39633 39621 14 154810000 26458000 11039000 QISNLQQSISDAEQRGENALKDAK RVIQRLRSEIDNVKKQISNLQQSISDAEQR SDAEQRGENALKDAKNKLNDLEDALQQAKE K Q I A K N 3 1 2 2 0 4 2 1 0 2 2 2 0 0 0 3 0 0 0 0 0 0 24 2 2642.326 P04264;CON__P04264 P04264 418 441 KRT1 Keratin, type II cytoskeletal 1 yes no 4 3.3952E-23 162.83 By MS/MS 8.5 0.5 1 1 2 27116000 27116000 0 0 + 10966 413 11547 47504;47505 39634;39635 39635 2 19422000 0 0 QISQAYEVLSDAK KYHPDKNPNEGEKFKQISQAYEVLSDAKKR FKQISQAYEVLSDAKKRELYDKGGEQAIKE K Q I A K K 2 0 0 1 0 2 1 0 0 1 1 1 0 0 0 2 0 0 1 1 0 0 13 0 1450.7304 P31689 P31689 47 59 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.00030307 129.88 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 47033000 0 11129000 35904000 10967 720 11548 47506;47507;47508 39636;39637;39638 39636 3 0 2868700 5260600 QISQMADDTVAELDR SKDTVSEDTIRLIEKQISQMADDTVAELDR QISQMADDTVAELDRHLAVKTKELLG____ K Q I D R H 2 1 0 3 0 2 1 0 0 1 1 0 1 0 0 1 1 0 0 1 0 0 15 0 1690.7832 Q96E11 Q96E11 237 251 MRRF Ribosome-recycling factor, mitochondrial yes yes 2 0.00028815 125.46 By MS/MS 7 0 1 1 10799000 0 0 10799000 10968 1770 11549 47509 39639 39639 1 0 0 1916100 QISRPSAAGINLMIGSTR SQLDPVNERMLNMIRQISRPSAAGINLMIG RPSAAGINLMIGSTRYGDGPRPPKMARYDN R Q I T R Y 2 2 1 0 0 1 0 2 0 3 1 0 1 0 1 3 1 0 0 0 0 0 18 1 1871.0047 Q08211 Q08211 1137 1154 DHX9 ATP-dependent RNA helicase A yes yes 2;3 4.1914E-39 207.4 By MS/MS By MS/MS 2 0.894 3 5 1 1 7 3 116290000 0 78072000 38219000 10969 1182 11550;11551 47510;47511;47512;47513;47514;47515;47516;47517;47518;47519 39640;39641;39642;39643;39644;39645;39646 39643 566 7 0 34841000 8588400 QITAQQINKLEELWK WLVKIPSEQEQLRARQITAQQINKLEELWK QITAQQINKLEELWKENPSATLEDLEKPGV R Q I W K E 1 0 1 0 0 3 2 0 0 2 2 2 0 0 0 0 1 1 0 0 0 0 15 1 1841.0047 Q92900 Q92900 256 270 UPF1 Regulator of nonsense transcripts 1 yes yes 3 0.0003937 93.039 By MS/MS 2 0 1 1 2168500 0 2168500 0 10970 1729 11552 47520 39647 39647 1 0 976520 0 QITIIDSPSFIVSPLNSSSALALR SMGLTRSMQVVPLDKQITIIDSPSFIVSPL FIVSPLNSSSALALRSPASIEVVKPMEAAS K Q I L R S 2 1 1 1 0 1 0 0 0 4 3 0 0 1 2 6 1 0 0 1 0 0 24 0 2528.385 Q9BVP2 Q9BVP2 300 323 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 3 2.0694E-26 174.01 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 30274000 0 16534000 13740000 10971 1917 11553 47521;47522;47523 39648;39649;39650 39649 2 0 5810800 2664900 QITLNDLPVGR TLRGLFIIDDKGILRQITLNDLPVGRSVDE GILRQITLNDLPVGRSVDETLRLVQAFQYT R Q I G R S 0 1 1 1 0 1 0 1 0 1 2 0 0 0 1 0 1 0 0 1 0 0 11 0 1224.6826 Q13162 Q13162 213 223 PRDX4 Peroxiredoxin-4 yes yes 2 4.1631E-05 146.27 By matching By MS/MS By MS/MS 7.57 1.18 1 3 2 1 1 3 3 99673000 3702800 42242000 53728000 10972 1227 11554 47524;47525;47526;47527;47528;47529;47530 39651;39652;39653;39654;39655;39656 39655 6 7980400 21174000 18360000 QITVNDLPVGR SFRGLFIIDDKGILRQITVNDLPVGRSVDE GILRQITVNDLPVGRSVDETLRLVQAFQFT R Q I G R S 0 1 1 1 0 1 0 1 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1210.667 P32119;Q06830 Q06830 141 151 PRDX2;PRDX1 Peroxiredoxin-2;Peroxiredoxin-1 no no 2 5.7595E-42 182.98 By MS/MS By MS/MS By MS/MS 6.25 2.92 2 1 1 1 3 1 1 2 8 1 3 292350000 71077000 53019000 168250000 10973 1173;727 11555 47531;47532;47533;47534;47535;47536;47537;47538;47539;47540;47541;47542 39657;39658;39659;39660;39661;39662;39663;39664;39665 39665 9 71238000 30444000 29954000 QKEEESQQQAVLEQERR DEKRIQAEVEAQLARQKEEESQQQAVLEQE EEESQQQAVLEQERRDRELALRIAQSEAEL R Q K R R D 1 2 0 0 0 5 5 0 0 0 1 1 0 0 0 1 0 0 0 1 0 0 17 2 2114.0352 Q9UM54 Q9UM54 992 1008 MYO6 Unconventional myosin-VI yes yes 3 0.00026749 94.487 By MS/MS 2 0 1 1 2572800 0 2572800 0 10974 2198 11556 47543 39666 39666 1 0 1158600 0 QKELEEIYMLPR IIPEDQRRRLEEEERQKELEEIYMLPRMRN EERQKELEEIYMLPRMRNCAKQISFNGSEG R Q K P R M 0 1 0 0 0 1 3 0 0 1 2 1 1 0 1 0 0 0 1 0 0 0 12 1 1547.8018 O14647;O14646 O14646 1061 1072 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 3 0.0046826 84.479 By MS/MS 1 0 1 1 4961200 0 0 4961200 10975 141;142 11557 47544 39667 39667 1 0 0 1069000 QKGYNHGQGSYSYSNSYNSPGGGGGSDYNYESK YNQSPYSNYGPPQGKQKGYNHGQGSYSYSN SPGGGGGSDYNYESKFNYSGSGGRSGGNSY K Q K S K F 0 0 4 1 0 2 1 8 1 0 0 2 0 0 1 7 0 0 6 0 0 0 33 1 3508.4464 Q12906 Q12906 774 806 ILF3 Interleukin enhancer-binding factor 3 yes yes 4 1.2726E-10 64.152 By MS/MS 2 0 1 1 5823100 0 5823100 0 10976 1211 11558 47545 39668 39668 1 0 2622200 0 QKLDILDQER QQLLAHGHYASPEIKQKLDILDQERADLEK SPEIKQKLDILDQERADLEKAWVQRRMMLD K Q K E R A 0 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1256.6725 Q13813 Q13813 1418 1427 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.0049886 82.029 By MS/MS 1 0 1 1 11407000 0 0 11407000 10977 1268 11559 47546 39669 39669 1 0 0 2457800 QKPMNVGLSETQNGGMSQEAVGNIK VSEETMGSRKVKKSKQKPMNVGLSETQNGG TQNGGMSQEAVGNIKVTKSPQKSTVLTNGE K Q K I K V 1 0 3 0 0 3 2 4 0 1 1 2 2 0 1 2 1 0 0 2 0 0 25 1 2616.2636 Q9NVP1 Q9NVP1 58 82 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3 0.00077094 50.891 By MS/MS 3 0 1 1 6321200 0 6321200 0 10978 2069 11560 47547 39670 39670 1 0 2694700 0 QKPSNTEDFIEDIVK FTASFNRPNLYYEVRQKPSNTEDFIEDIVK QKPSNTEDFIEDIVKLINGRYKGQSGIIYC R Q K V K L 0 0 1 2 0 1 2 0 0 2 0 2 0 1 1 1 1 0 0 1 0 0 15 1 1761.8785 P46063 P46063 292 306 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.016009 90.614 By MS/MS 3 0 1 1 12674000 0 0 12674000 10979 823 11561 47548 39671 39671 1 0 0 2458100 QKVDSLLENLEK GDDLQAIKKELTQIKQKVDSLLENLEKIEK QIKQKVDSLLENLEKIEKEQSKQAVEMKND K Q K E K I 0 0 1 1 0 1 2 0 0 0 3 2 0 0 0 1 0 0 0 1 0 0 12 1 1414.7668 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 205 216 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2;3 4.3082E-18 195.51 By MS/MS By MS/MS 5.33 1.43 2 1 3 4 1 1 5 7 521820000 0 109840000 411980000 10980 467 11562 47549;47550;47551;47552;47553;47554;47555;47556;47557;47558;47559;47560 39672;39673;39674;39675;39676;39677;39678;39679;39680;39681 39674 10 0 37601000 60644000 QKVEGTEPTTAFNLFVGNLNFNK KKEMAKQKAAPEAKKQKVEGTEPTTAFNLF TTAFNLFVGNLNFNKSAPELKTGISDVFAK K Q K N K S 1 0 4 0 0 1 2 2 0 0 2 2 0 3 1 0 3 0 0 2 0 0 23 1 2567.302 P19338 P19338 296 318 NCL Nucleolin yes yes 3 1.4631E-20 145.88 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 94041000 0 41048000 52993000 10981 604 11563 47561;47562;47563;47564;47565;47566 39682;39683;39684;39685;39686;39687 39687 6 0 16719000 10738000 QKWEAEPVYVQR IPAWVPFDPAAQITKQKWEAEPVYVQRAKA ITKQKWEAEPVYVQRAKAYLEEECPATLRK K Q K Q R A 1 1 0 0 0 2 2 0 0 0 0 1 0 0 1 0 0 1 1 2 0 0 12 1 1531.7783 P25311 P25311 166 177 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2;3 1.7765E-24 200.6 By MS/MS By matching By matching 5.35 3.18 2 4 1 2 1 1 2 2 2 15 1 1 175830000 172790000 1827400 1213600 10982 656 11564 47567;47568;47569;47570;47571;47572;47573;47574;47575;47576;47577;47578;47579;47580;47581;47582;47583 39688;39689;39690;39691;39692;39693;39694;39695;39696;39697 39696 10 158080000 822880 274260 QLADETLLK DQIAQLEASLAAAKKQLADETLLKVDLENR LAAAKKQLADETLLKVDLENRCQSLTEDLE K Q L L K V 1 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 9 0 1029.5706 P20700 P20700 183 191 LMNB1 Lamin-B1 yes yes 2 0.0030827 101.25 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 302000000 0 62243000 239760000 10983 619 11565 47584;47585;47586 39698;39699 39698 2 0 26623000 46502000 QLAEDFLR RQTLMWSATWPKEVRQLAEDFLRDYTQINV TWPKEVRQLAEDFLRDYTQINVGNLELSAN R Q L L R D 1 1 0 1 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 8 0 990.51345 Q92841 Q92841 365 372 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 0.00066657 126.67 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 2 5 120620000 0 15763000 104860000 10984 1725 11566 47587;47588;47589;47590;47591;47592;47593 39700;39701;39702 39702 3 0 6851400 20078000 QLAEEDLAQQR AARLSVAAQEAARLRQLAEEDLAQQRALAE ARLRQLAEEDLAQQRALAEKMLKEKMQAVQ R Q L Q R A 2 1 0 1 0 3 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1299.6419 Q15149 Q15149 2432 2442 PLEC Plectin yes yes 2 0.0096619 91.867 By MS/MS 1 0 1 1 18893000 0 18893000 0 10985 1348 11567 47594 39703 39703 1 0 9234900 0 QLAELGGLDPPHCHR Q L H R 1 1 0 1 1 1 1 2 2 0 3 0 0 0 2 0 0 0 0 0 0 0 15 0 1698.826 REV__Q4VC44 yes yes 2 0.0038236 86.014 By MS/MS By MS/MS By matching 4.44 1.42 1 1 3 2 1 1 4 3 2 681210000 641810000 29291000 10105000 + 10986 2336 11568 47595;47596;47597;47598;47599;47600;47601;47602;47603 39704;39705;39706;39707 39704 4 699820000 11602000 1613300 QLALWNPK DGNVFTTGFSRMSERQLALWNPKNMQEPIA FSRMSERQLALWNPKNMQEPIALHEMDTSN R Q L P K N 1 0 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 8 0 968.54435 Q9ULV4 Q9ULV4 244 251 CORO1C Coronin-1C yes yes 2 0.037834 75.972 By matching By MS/MS By MS/MS 4.4 0.49 3 2 1 2 2 60625000 3001000 25756000 31868000 10987 2192 11569 47604;47605;47606;47607;47608 39708;39709;39710 39708 3 2341300 7326200 4826500 QLAPLLPSLAPSSAR LASRSLSHWRPRPPRQLAPLLPSLAPSSAR QLAPLLPSLAPSSARQGARRAQRHVTAQQP R Q L A R Q 3 1 0 0 0 1 0 0 0 0 4 0 0 0 3 3 0 0 0 0 0 0 15 0 1519.8722 O14979 O14979 37 51 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 0.00045179 139.32 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 21341000 0 11189000 10152000 10988 157 11570 47609;47610;47611 39711;39712 39711 2 0 3463900 1658100 QLAQIDGTLSTIEFQR RAALQALKRKKRYEKQLAQIDGTLSTIEFQ LAQIDGTLSTIEFQREALENANTNTEVLKN K Q L Q R E 1 1 0 1 0 3 1 1 0 2 2 0 0 1 0 1 2 0 0 0 0 0 16 0 1818.9476 Q9H444 Q9H444 78 93 CHMP4B Charged multivesicular body protein 4b yes yes 2 3.0487E-26 201 By MS/MS By MS/MS 6 0 3 1 2 30206000 0 10285000 19921000 10989 1981 11571 47612;47613;47614 39713;39714 39713 2 0 3560300 2980500 QLASGLLLVTGPLVLNR ILTGRHRGKRVVFLKQLASGLLLVTGPLVL ASGLLLVTGPLVLNRVPLRRTHQKFVIATS K Q L N R V 1 1 1 0 0 1 0 2 0 0 6 0 0 0 1 1 1 0 0 2 0 0 17 0 1763.0669 Q02878 Q02878 167 183 RPL6 60S ribosomal protein L6 yes yes 2;3 1.9681E-92 256.31 By MS/MS By MS/MS 4.65 1.64 1 1 2 3 4 4 2 8 9 182920000 0 79633000 103290000 10990 1149 11572 47615;47616;47617;47618;47619;47620;47621;47622;47623;47624;47625;47626;47627;47628;47629;47630;47631 39715;39716;39717;39718;39719;39720;39721;39722;39723;39724;39725;39726;39727;39728;39729;39730 39722 16 0 26742000 15739000 QLDDLKVELSQLR KARDLRGKKKEELLKQLDDLKVELSQLRVA LKQLDDLKVELSQLRVAKVTGGAASKLSKI K Q L L R V 0 1 0 2 0 2 1 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 13 1 1555.857 P42766 P42766 20 32 RPL35 60S ribosomal protein L35 yes yes 2;3 4.1018E-122 213.34 By MS/MS By MS/MS 7.33 0.943 2 3 3 1 3 6 84769000 0 17860000 66908000 10991 810 11573 47632;47633;47634;47635;47636;47637;47638;47639;47640 39731;39732;39733;39734;39735;39736 39736 6 0 7983200 11257000 QLDSIVGER NLEPLFEQYINNLRRQLDSIVGERGRLDSE INNLRRQLDSIVGERGRLDSELRNMQDLVE R Q L E R G 0 1 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1015.5298 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668 CON__P48668 224 232 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 0.00021238 129.29 By MS/MS By matching By MS/MS 5.58 3.09 1 2 1 1 1 1 1 1 1 2 8 1 3 316370000 284360000 1641500 30365000 + 10992 68;37;47;58 11574 47641;47642;47643;47644;47645;47646;47647;47648;47649;47650;47651;47652 39737;39738;39739;39740;39741;39742;39743;39744 39744 8 260620000 423120 4984400 QLEAIDQLHLEYAK SLTHSRREALEKTEKQLEAIDQLHLEYAKR KQLEAIDQLHLEYAKRAAPFNNWMESAMED K Q L A K R 2 0 0 1 0 2 2 0 1 1 3 1 0 0 0 0 0 0 1 0 0 0 14 0 1669.8675 O43707 O43707 522 535 ACTN4 Alpha-actinin-4 yes yes 2 1.1176E-60 178.53 By MS/MS 2 0 1 1 0 0 0 0 10993 210 11575 47653 39745 39745 1 0 0 0 QLEDELVSLQK EQAEADKKAAEDRSKQLEDELVSLQKKLKG DRSKQLEDELVSLQKKLKGTEDELDKYSEA K Q L Q K K 0 0 0 1 0 2 2 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 11 0 1300.6874 P09493 P09493 38 48 TPM1 Tropomyosin alpha-1 chain yes yes 2 0.024764 81.547 By MS/MS 6 0 1 1 9145400 0 0 9145400 + 10994 485 11576 47654 39746 39746 1 0 0 1368300 QLEDGDQPESK VNNSTPDFGFGGQKRQLEDGDQPESKKLAS GQKRQLEDGDQPESKKLASQGDSISSQLGP R Q L S K K 0 0 0 2 0 2 2 1 0 0 1 1 0 0 1 1 0 0 0 0 0 0 11 0 1244.5521 Q92945 Q92945 111 121 KHSRP Far upstream element-binding protein 2 yes yes 2 0.0055877 99.815 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 8330500 0 4209100 4121400 10995 1733 11577 47655;47656 39747;39748 39748 2 0 1895400 799360 QLEEAEEEAQR DQADKASTRLKQLKRQLEEAEEEAQRANAS QLKRQLEEAEEEAQRANASRRKLQRELEDA R Q L Q R A 2 1 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 11 0 1330.6001 P35579 P35579 1878 1888 MYH9 Myosin-9 yes yes 2 1.303E-46 220.39 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 43681000 0 31643000 12038000 10996 752 11578 47657;47658;47659 39749;39750;39751 39749 3 0 15315000 2593800 QLEEAEEEATR EQMEKANARMKQLKRQLEEAEEEATRANAS QLKRQLEEAEEEATRANASRRKLQRELDDA R Q L T R A 2 1 0 0 0 1 5 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 11 0 1303.5892 P35580 P35580 1885 1895 MYH10 Myosin-10 yes yes 2 1.4392E-07 161.63 By MS/MS By MS/MS 1 0 2 1 1 17061000 0 7414000 9646900 10997 753 11579 47660;47661 39752;39753 39753 2 0 3623900 2078600 QLEELLSDMK AGNKPANAVLHKVLKQLEELLSDMKADVTR HKVLKQLEELLSDMKADVTRLPATIARIPP K Q L M K A 0 0 0 1 0 1 2 0 0 0 3 1 1 0 0 1 0 0 0 0 0 0 10 0 1204.6009 Q14839 Q14839 1856 1865 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 1.4907E-05 112.01 By MS/MS 1 0 1 1 0 0 0 0 10998 1321 11580 47662 39754 39754 1 0 0 0 QLELRQEEER RRMEELHNQEVQKRKQLELRQEEERRRREE VQKRKQLELRQEEERRRREEEMRRQQEEMM K Q L E R R 0 2 0 0 0 2 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 1 1328.6684 Q15233 Q15233 339 348 NONO Non-POU domain-containing octamer-binding protein yes yes 3 0.048307 70.412 By MS/MS 4 0 1 1 3297300 0 3297300 0 10999 1351 11581 47663 39755 39755 0 0 1094200 0 QLEMSAEAER ETQGFQRTLEAERQRQLEMSAEAERLKLRV AERQRQLEMSAEAERLKLRVAEMSRAQARA R Q L E R L 2 1 0 0 0 1 3 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 10 0 1162.5288 Q15149 Q15149 2512 2521 PLEC Plectin yes yes 2 0.0004495 117.84 By MS/MS 1 0 1 1 11782000 0 0 11782000 11000 1348 11582 47664 39756 39756 1 0 0 2538500 QLEQLQGER GLEPVFEACLDQLRKQLEQLQGERGALDAE LDQLRKQLEQLQGERGALDAELKACRDQEE K Q L E R G 0 1 0 0 0 3 2 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 9 0 1099.5622 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 172 180 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.0004699 119.07 By MS/MS 9 0 1 1 2430100 2430100 0 0 + 11001 94 11583 47665 39757 39757 1 1364100 0 0 QLETLGQEK NMDNMFESYINNLRRQLETLGQEKLKLEAE INNLRRQLETLGQEKLKLEAELGNMQGLVE R Q L E K L 0 0 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 9 0 1044.5451 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 150 158 KRT8 Keratin, type II cytoskeletal 8 yes no 2 4.3927E-05 148.62 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 319930000 0 69055000 250870000 + 11002 49 11584 47666;47667;47668;47669;47670;47671;47672;47673 39758;39759;39760;39761;39762;39763;39764 39762 7 0 21498000 41651000 QLFDQVVK DAELEFAIQPNTTGKQLFDQVVKTIGLREV QPNTTGKQLFDQVVKTIGLREVWFFGLQYQ K Q L V K T 0 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 8 0 975.53893 P15311;P26038;P35241 P26038 28 35 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 2 0.011045 92.47 By matching By MS/MS By MS/MS 3 0 3 1 1 1 37363000 2250600 19963000 15149000 11003 664;569;742 11585 47674;47675;47676 39765;39766 39765 2 2596700 8510400 2938100 QLFHPEQLITGK LEPTVIDEVRTGTYRQLFHPEQLITGKEDA TYRQLFHPEQLITGKEDAANNYARGHYTIG R Q L G K E 0 0 0 0 0 2 1 1 1 1 2 1 0 1 1 0 1 0 0 0 0 0 12 0 1409.7667 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 85 96 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3 1.1958E-106 261.41 By MS/MS By MS/MS By MS/MS 4.82 2.52 2 4 4 4 4 2 4 3 1 1 15 12 2252600000 12732000 589730000 1650100000 11004 1077;1515;1883;1078 11586 47677;47678;47679;47680;47681;47682;47683;47684;47685;47686;47687;47688;47689;47690;47691;47692;47693;47694;47695;47696;47697;47698;47699;47700;47701;47702;47703;47704 39767;39768;39769;39770;39771;39772;39773;39774;39775;39776;39777;39778;39779;39780;39781;39782;39783;39784;39785;39786;39787;39788;39789;39790;39791;39792;39793;39794;39795;39796;39797;39798;39799 39789 33 9933300 177730000 264680000 QLFHPEQLITGKEDAANNYAR LEPTVIDEVRTGTYRQLFHPEQLITGKEDA QLITGKEDAANNYARGHYTIGKEIIDLVLD R Q L A R G 3 1 2 1 0 2 2 1 1 1 2 1 0 1 1 0 1 0 1 0 0 0 21 1 2414.1979 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q9BQE3 P68363 85 105 TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2;3;4 3.0556E-239 323.24 By MS/MS By MS/MS 4.14 1.86 2 3 2 5 4 3 1 1 8 13 656100000 0 322710000 333380000 11005 1077;1515;1883;1078 11587 47705;47706;47707;47708;47709;47710;47711;47712;47713;47714;47715;47716;47717;47718;47719;47720;47721;47722;47723;47724;47725 39800;39801;39802;39803;39804;39805;39806;39807;39808;39809;39810;39811;39812;39813;39814;39815;39816;39817;39818;39819;39820;39821 39819 22 0 97597000 52943000 QLFLGGVDR FPTQALNFAFKDKYKQLFLGGVDRHKQFWR FKDKYKQLFLGGVDRHKQFWRYFAGNLASG K Q L D R H 0 1 0 1 0 1 0 2 0 0 2 0 0 1 0 0 0 0 0 1 0 0 9 0 1003.5451 P12235 P12235 97 105 SLC25A4 ADP/ATP translocase 1 yes yes 2 0.0017944 106.68 By MS/MS 6 0 1 1 5773200 0 0 5773200 11006 533 11588 47726 39822 39822 1 0 0 863720 QLFNSLATQEGEWK SEIMERDAERKRKVKQLFNSLATQEGEWKA KQLFNSLATQEGEWKALKRKKFKK______ K Q L W K A 1 0 1 0 0 2 2 1 0 0 2 1 0 1 0 1 1 1 0 0 0 0 14 0 1649.8049 P78316 P78316 835 848 NOP14 Nucleolar protein 14 yes yes 2 0.023266 72.817 By MS/MS 2 0 1 1 15631000 0 0 15631000 11007 1083 11589 47727 39823 39823 1 0 0 3532300 QLGISATMLNASSSK CPLISLMEDQLMVLKQLGISATMLNASSSK QLGISATMLNASSSKEHVKWVHAEMVNKNS K Q L S K E 2 0 1 0 0 1 0 1 0 1 2 1 1 0 0 4 1 0 0 0 0 0 15 0 1506.7712 P46063 P46063 153 167 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.00023204 150.06 By matching By MS/MS By MS/MS 2.67 0.471 1 2 1 1 1 32746000 2109900 7704100 22932000 11008 823 11590 47728;47729;47730 39824;39825 39824 2 2542200 3284200 4447700 QLGLPTALKR GPLEQFPHSMEPQLRQLGLPTALKRGVVTL EPQLRQLGLPTALKRGVVTLLSDYEVCKEG R Q L K R G 1 1 0 0 0 1 0 1 0 0 3 1 0 0 1 0 1 0 0 0 0 0 10 1 1095.6764 Q9UKD2 Q9UKD2 155 164 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0043292 105.52 By MS/MS By MS/MS 7.75 1.39 2 2 1 2 1 2 6 143520000 0 16986000 126530000 11009 2177 11591 47731;47732;47733;47734;47735;47736;47737;47738 39826;39827;39828;39829;39830;39831;39832;39833;39834 39828 9 0 12485000 59830000 QLGQSEGSVSLSLVK IEAAIGPEAAKIARKQLGQSEGSVSLSLVK QLGQSEGSVSLSLVKEQAFGGLTRALALDC K Q L V K E 0 0 0 0 0 2 1 2 0 0 3 1 0 0 0 4 0 0 0 2 0 0 15 0 1530.8253 Q9GZR2 Q9GZR2 219 233 REXO4 RNA exonuclease 4 yes yes 2 0.00037012 117.09 By MS/MS 4 0 1 1 7151800 0 7151800 0 11010 1951 11592 47739 39835 39835 1 0 2373400 0 QLGSILQDSLAK QQNDESKEFVKFFHKQLGSILQDSLAKFAG FHKQLGSILQDSLAKFAGRKLKDCGEDLLV K Q L A K F 1 0 0 1 0 2 0 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 12 0 1271.7085 Q15154 Q15154 1648 1659 PCM1 Pericentriolar material 1 protein yes yes 2 0.025808 80.896 By MS/MS 1 0 1 1 5213500 0 0 5213500 11011 1349 11593 47740 39836 39836 1 0 0 1123300 QLHDDYFYHDEL NPDLFLTSEATDYGRQLHDDYFYHDEL___ YGRQLHDDYFYHDEL_______________ R Q L E L - 0 0 0 3 0 1 1 0 2 0 2 0 0 1 0 0 0 0 2 0 0 0 12 0 1593.6736 Q14257 Q14257 306 317 RCN2 Reticulocalbin-2 yes yes 2;3 1.8888E-05 153.05 By MS/MS By MS/MS 5.57 0.728 4 2 1 2 5 65385000 19908000 0 45477000 11012 1296 11594 47741;47742;47743;47744;47745;47746;47747 39837;39838;39839;39840 39840 4 15949000 0 6459400 QLILEEIFTSLAR IKLVTAVFSRYEKHRQLILEEIFTSLARLP HRQLILEEIFTSLARLPTSKRSLRNFRLNS R Q L A R L 1 1 0 0 0 1 2 0 0 2 3 0 0 1 0 1 1 0 0 0 0 0 13 0 1531.861 Q6KC79 Q6KC79 1450 1462 NIPBL Nipped-B-like protein yes yes 2 2.9857E-07 166.93 By MS/MS 1.5 0.5 1 1 2 11067000 0 0 11067000 11013 1480 11595 47748;47749 39841 39841 1 0 0 2414100 QLIVGVNK QTREHALLAYTLGVKQLIVGVNKMDSTEPP AYTLGVKQLIVGVNKMDSTEPPYSQKRYEE K Q L N K M 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 8 0 869.53345 Q5VTE0;P68104;Q05639 Q5VTE0 147 154 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 0.0072702 97.075 By matching By MS/MS By MS/MS 7 2.35 1 1 2 1 1 2 2 3 3 59251000 2391000 23257000 33603000 11014 1076;1165 11596 47750;47751;47752;47753;47754;47755;47756;47757 39842;39843 39842 2 3203500 6391800 24423000 QLLEEELAR LIRLRAETEQGEQQRQLLEEELARLQREAA QGEQQRQLLEEELARLQREAAAATQKRQEL R Q L A R L 1 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1099.5873 Q15149 Q15149 1867 1875 PLEC Plectin yes yes 2 0.0005603 126.52 By MS/MS By MS/MS 1 0 2 1 1 20684000 0 9589000 11095000 11015 1348 11597 47758;47759 39844;39845 39844 2 0 4687000 2390500 QLLNCLHVITLYNR SLFDIQVKRIHEYKRQLLNCLHVITLYNRI RQLLNCLHVITLYNRIKREPNKFFVPRTVM R Q L N R I 0 1 2 0 1 1 0 0 1 1 4 0 0 0 0 0 1 0 1 1 0 0 14 0 1755.9454 P11217 P11217 577 590 PYGM Glycogen phosphorylase, muscle form yes yes 2 0.045682 65.347 By MS/MS 1 0 1 1 6273000 0 0 6273000 11016 520 11598 47760 39846 39846 1 0 0 1351600 QLLPMLLQGTSIFTAPK LSMALGTYYPPPRLRQLLPMLLQGTSIFTA LPMLLQGTSIFTAPKEIAEIKAQLETALKW R Q L P K E 1 0 0 0 0 2 0 1 0 1 4 1 1 1 2 1 2 0 0 0 0 0 17 0 1857.0434 Q9HCE1 Q9HCE1 302 318 MOV10 Putative helicase MOV-10 yes yes 2;3 7.352E-06 131.06 By MS/MS 2.33 0.471 2 1 3 3595600 0 3595600 0 11017 2011 11599 47761;47762;47763 39847;39848 39847 2 0 1612400 0 QLLQANPILEAFGNAK ASSHKSKKDQGELERQLLQANPILEAFGNA LLQANPILEAFGNAKTVKNDNSSRFGKFIR R Q L A K T 3 0 2 0 0 2 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0 0 16 0 1725.9414 P35579;Q7Z406 P35579 210 225 MYH9;MYH14 Myosin-9;Myosin-14 no no 2;3 4.12E-74 240.41 By matching By MS/MS By MS/MS 3 2.49 5 1 1 1 2 1 5 4 279890000 631850 235240000 44013000 11018 752;1531 11600 47764;47765;47766;47767;47768;47769;47770;47771;47772;47773 39849;39850;39851;39852;39853;39854;39855;39856;39857;39858;39859;39860;39861 39849 13 631850 114150000 9334900 QLLQANPILESFGNAK HKGRKDHNIPGELERQLLQANPILESFGNA LLQANPILESFGNAKTVKNDNSSRFGKFIR R Q L A K T 2 0 2 0 0 2 1 1 0 1 3 1 0 1 1 1 0 0 0 0 0 0 16 0 1741.9363 P35580 P35580 217 232 MYH10 Myosin-10 yes yes 2;3 7.911E-109 265.6 By MS/MS By MS/MS 2 1.15 3 1 1 1 5 1 67693000 0 53417000 14276000 11019 753 11601 47774;47775;47776;47777;47778;47779 39862;39863;39864;39865;39866;39867 39863 6 0 25664000 3075900 QLLQEQESVK EELRRLSSEVEALRRQLLQEQESVKQAHLR EALRRQLLQEQESVKQAHLRNEHFQKAIED R Q L V K Q 0 0 0 0 0 3 2 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1200.635 P15924 P15924 1667 1676 DSP Desmoplakin yes yes 2 0.00026954 120.12 By MS/MS By matching 5.25 4.26 2 1 1 3 1 23715000 11800000 0 11915000 11020 572 11602 47780;47781;47782;47783 39868;39869 39868 2 11153000 0 2567300 QLNHFWEIVVQDGITLITK FNNFLKALQEKVEIKQLNHFWEIVVQDGIT FWEIVVQDGITLITKEEASGSSVTAEEAKK K Q L T K E 0 0 1 1 0 2 1 1 1 3 2 1 0 1 0 0 2 1 0 2 0 0 19 0 2253.2158 P13010 P13010 670 688 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 1.8517E-06 103.66 By MS/MS 2.5 0.5 1 1 2 6313500 0 0 6313500 11021 542 11603 47784;47785 39870 39870 1 0 0 1318000 QLNNWAVYR PAVAVIDNGRGMTSKQLNNWAVYRLSKFTR RGMTSKQLNNWAVYRLSKFTRQGDFESDHS K Q L Y R L 1 1 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 9 0 1162.5883 A6NHR9 A6NHR9 193 201 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 7.9259E-05 144.83 By MS/MS 1 0 1 1 4381700 0 4381700 0 11022 15 11604 47786 39871 39871 1 0 2141700 0 QLNPESIRPGGPGGLSR SWWRPEPTMPPTSWRQLNPESIRPGGPGGL NPESIRPGGPGGLSRSLGREEEEDEEEELE R Q L S R S 0 2 1 0 0 1 1 4 0 1 2 0 0 0 3 2 0 0 0 0 0 0 17 1 1733.9173 Q7L2E3 Q7L2E3 167 183 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3 2.1429E-06 118.2 By MS/MS By MS/MS 2 0 2 1 1 29375000 0 9824200 19551000 11023 1522 11605 47787;47788 39872;39873 39872 2 0 4424000 4418200 QLNYTIGEVPISFVDR SKGYVFQMEMIVRARQLNYTIGEVPISFVD LNYTIGEVPISFVDRVYGESKLGGNEIVSF R Q L D R V 0 1 1 1 0 1 1 1 0 2 1 0 0 1 1 1 1 0 1 2 0 0 16 0 1849.9574 O60762 O60762 219 234 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 2.2897E-27 206.21 By MS/MS 7 0 1 1 18857000 0 0 18857000 11024 231 11606 47789 39874 39874 1 0 0 3346000 QLPAMTALQTLHLR TLVLNGNPLLHAQLRQLPAMTALQTLHLRS RQLPAMTALQTLHLRSTQRTQSNLPTSLEG R Q L L R S 2 1 0 0 0 2 0 0 1 0 4 0 1 0 1 0 2 0 0 0 0 0 14 0 1591.8868 Q13045 Q13045 193 206 FLII Protein flightless-1 homolog yes yes 3 0.0041883 73.022 By MS/MS 2 0 1 1 2073100 0 2073100 0 11025 1216 11607 47790 39875 39875 1 0 933570 0 QLPAQPPEHAVDGEGFK DSFCDSKEYVAAQLRQLPAQPPEHAVDGEG PAQPPEHAVDGEGFKNTLETSSLNFKVTPD R Q L F K N 2 0 0 1 0 2 2 2 1 0 1 1 0 1 3 0 0 0 0 1 0 0 17 0 1818.8901 Q14151 Q14151 172 188 SAFB2 Scaffold attachment factor B2 yes yes 3 0.060713 30.152 By MS/MS 2 0 1 1 6673900 0 6673900 0 11026 1285 11608 47791 39876 39876 1 0 3005300 0 QLPAQPPEHAVDGEGFKNTLETSSLNFK DSFCDSKEYVAAQLRQLPAQPPEHAVDGEG EGFKNTLETSSLNFKVTPDIEESLLEPENE R Q L F K V 2 0 2 1 0 2 3 2 1 0 3 2 0 2 3 2 2 0 0 1 0 0 28 1 3053.5094 Q14151 Q14151 172 199 SAFB2 Scaffold attachment factor B2 yes yes 4 1.0486E-06 62.051 By MS/MS 2 0 1 1 7863800 0 7863800 0 11027 1285 11609 47792 39877 39877 1 0 3541200 0 QLPDKWQHDLFDSGFGGGAGVETGGK GGGGRNRPAPYSRPKQLPDKWQHDLFDSGF DSGFGGGAGVETGGKLLVSNLDFGVSDADI K Q L G K L 1 0 0 3 0 2 1 7 1 0 2 2 0 2 1 1 1 1 0 1 0 0 26 1 2702.2725 Q86V81 Q86V81 82 107 ALYREF THO complex subunit 4 yes yes 3;4 6.061E-09 87.102 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 91079000 0 12146000 78933000 11028 1551 11610 47793;47794;47795;47796 39878;39879;39880 39880 3 0 4204600 12095000 QLPHFTSEHIK QMVTQAMWSKDSYLKQLPHFTSEHIKRCTD SYLKQLPHFTSEHIKRCTDKGVESVFDIME K Q L I K R 0 0 0 0 0 1 1 0 2 1 1 1 0 1 1 1 1 0 0 0 0 0 11 0 1335.6935 O75643 O75643 1962 1972 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.064273 70.399 By matching By MS/MS 1 0 2 1 1 9650500 1474500 0 8176000 11029 277 11611 47797;47798 39881 39881 1 1474500 0 1761600 QLPLLTSALHGLQQQHPAFSGVAR LRDTAASLRLERDTRQLPLLTSALHGLQQQ HGLQQQHPAFSGVARLAKRWVRAQLLGEGF R Q L A R L 3 1 0 0 0 4 0 2 2 0 5 0 0 1 2 2 1 0 0 1 0 0 24 0 2568.3925 Q9H6R4 Q9H6R4 833 856 NOL6 Nucleolar protein 6 yes yes 4 6.5E-05 66.871 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 18429000 0 4842000 13587000 11030 1988 11612 47799;47800;47801;47802 39882;39883 39882 2 0 2180400 2901400 QLPLVKPYLR RLDHTRAVNYFSKVKQLPLVKPYLRSVQNH FSKVKQLPLVKPYLRSVQNHNNKSVNESLN K Q L L R S 0 1 0 0 0 1 0 0 0 0 3 1 0 0 2 0 0 0 1 1 0 0 10 1 1225.7547 Q00610 Q00610 1444 1453 CLTC Clathrin heavy chain 1 yes yes 2;3 0.0041041 101.33 By MS/MS By MS/MS 1.5 0.866 3 1 1 3 50848000 0 3600300 47247000 11031 1125 11613 47803;47804;47805;47806 39884;39885;39886;39887 39884 4 0 1759800 10087000 QLQAAAAHWQQHQQHR EEPQSEDPEEDARLKQLQAAAAHWQQHQQH LQAAAAHWQQHQQHRVGFQYQGIMQKHTQL K Q L H R V 4 1 0 0 0 6 0 0 3 0 1 0 0 0 0 0 0 1 0 0 0 0 16 0 1936.9517 P49750 P49750 382 397 YLPM1 YLP motif-containing protein 1 yes yes 4 0.0001568 95.631 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 10514000 0 1980200 8534000 11032 865 11614 47807;47808;47809 39888;39889 39889 2 0 967910 1849900 QLQALSSELAQAR EERVTETQKNERVKKQLQALSSELAQARDE KKQLQALSSELAQARDETKKTQNDVLHAEN K Q L A R D 3 1 0 0 0 3 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 13 0 1413.7576 P35241 P35241 527 539 RDX Radixin yes yes 2 1.8725E-57 228.2 By MS/MS 3 0 1 1 10630000 0 10630000 0 11033 742 11615 47810 39890 39890 1 0 4531400 0 QLQDEMLR GQVAKLEAALGEAKKQLQDEMLRRVDAENR ALGEAKKQLQDEMLRRVDAENRLQTMKEEL K Q L L R R 0 1 0 1 0 2 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 8 0 1031.507 P02545 P02545 182 189 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.6491E-06 124.59 By MS/MS By MS/MS 3 0 2 1 1 0 0 0 0 11034 387 11616 47811;47812 39891;39892 39892 2 0 0 0 QLQEERPELSESELTR RPVSAMFIFSEEKRRQLQEERPELSESELT LQEERPELSESELTRLLARMWNDLSEKKKA R Q L T R L 0 2 0 0 0 2 5 0 0 0 3 0 0 0 1 2 1 0 0 0 0 0 16 1 1942.9596 P17480 P17480 424 439 UBTF Nucleolar transcription factor 1 yes yes 2;3 4.1545E-46 224.8 By matching By MS/MS 2.67 0.745 3 2 1 1 5 95358000 0 10522000 84836000 11035 584 11617 47813;47814;47815;47816;47817;47818 39893;39894;39895;39896 39894 4 0 4738200 17802000 QLQGFPFYGKPMR FVIFKELGSSTNALRQLQGFPFYGKPMRIQ LRQLQGFPFYGKPMRIQYAKTDSDIISKMR R Q L M R I 0 1 0 0 0 2 0 2 0 0 1 1 1 2 2 0 0 0 1 0 0 0 13 1 1567.797 P08579 P08579 68 80 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 3 0.0031097 84.479 By MS/MS 7 0 1 1 5834800 0 5834800 0 11036 473 11618 47819 39897 39897 1 0 3350400 0 QLQLAQEAAQK EARRLRERAEQESARQLQLAQEAAQKRLQA ESARQLQLAQEAAQKRLQAEEKAHAFAVQQ R Q L Q K R 3 0 0 0 0 4 1 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 11 0 1226.6619 Q15149 Q15149 2172 2182 PLEC Plectin yes yes 2 3.5975E-05 147.24 By MS/MS 1 0 1 1 10640000 0 10640000 0 11037 1348 11619 47820 39898 39898 1 0 5200700 0 QLQLEAEEQR VPLGRKEAKAKELVRQLQLEAEEQRKQKKR KELVRQLQLEAEEQRKQKKRQSVSGLHRYL R Q L Q R K 1 1 0 0 0 3 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 0 1242.6204 Q8N1G4 Q8N1G4 415 424 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.010323 88.496 By matching By matching By MS/MS 2.33 0.471 2 1 1 1 1 24379000 15769000 2951300 5658700 11038 1600 11620 47821;47822;47823 39899 39899 1 18999000 1329000 1097500 QLQMDVIR LYSSCKSRLLEIVERQLQMDVIRKIEIDNG LLEIVERQLQMDVIRKIEIDNGDELTADFL R Q L I R K 0 1 0 1 0 2 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 8 0 1001.5328 Q12792 Q12792 286 293 TWF1 Twinfilin-1 yes yes 2 0.013648 89.296 By MS/MS 6 0 1 1 6551500 0 6551500 0 11039 1199 11621 47824 39900 39900 1 0 2267900 0 QLQNIIQATSR ENLLKASFERMDHLRQLQNIIQATSREIMW DHLRQLQNIIQATSREIMWINDCEEEELLY R Q L S R E 1 1 1 0 0 3 0 0 0 2 1 0 0 0 0 1 1 0 0 0 0 0 11 0 1270.6993 P15924 P15924 271 281 DSP Desmoplakin yes yes 2 2.6389E-13 174.8 By MS/MS By MS/MS By MS/MS 5.33 3.11 3 1 1 1 1 2 2 1 1 2 9 1 5 145440000 76888000 18341000 50207000 11040 572 11622 47825;47826;47827;47828;47829;47830;47831;47832;47833;47834;47835;47836;47837;47838;47839 39901;39902;39903;39904;39905;39906;39907;39908;39909;39910;39911 39909 11 89079000 8964800 20367000 QLQQAQAAGAEQEVEK GELAKRSERRAEAEKQLQQAQAAGAEQEVE LQQAQAAGAEQEVEKFTKRLVKVTKQHNDE K Q L E K F 4 0 0 0 0 5 3 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 16 0 1726.8486 P39748 P39748 110 125 FEN1 Flap endonuclease 1 yes yes 2;3 7.9947E-06 156.36 By MS/MS By MS/MS 5.12 0.927 2 4 1 1 2 6 155840000 0 11066000 144770000 11041 780 11623 47840;47841;47842;47843;47844;47845;47846;47847 39912;39913;39914;39915;39916;39917 39912 6 0 2852300 20835000 QLQQLQQLR ELELQKQLEKGRRLRQLQQLQQLRDSGEKV KGRRLRQLQQLQQLRDSGEKVVEIVKKLES R Q L L R D 0 1 0 0 0 5 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 9 0 1153.6568 O43290 O43290 511 519 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 1.8601E-16 176.65 By matching By MS/MS By matching 2.5 0.5 2 2 1 2 1 16338000 2107400 9465300 4765000 11042 193 11624 47848;47849;47850;47851 39918;39919 39918 2 2539200 4213500 924180 QLQVELQSR QDLQKRLESSEAERKQLQVELQSRRAELVC SEAERKQLQVELQSRRAELVCLNNTEISEN K Q L S R R 0 1 0 0 0 3 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1099.5986 Q9P0K7 Q9P0K7 454 462 RAI14 Ankycorbin yes yes 2 0.02354 79.893 By MS/MS 2 0 1 1 1935100 0 1935100 0 11043 2115 11625 47852 39920 39920 1 0 871410 0 QLSALHR DVMRFLLRVRCWQYRQLSALHRAPRPTRPD RVRCWQYRQLSALHRAPRPTRPDKARRLGY R Q L H R A 1 1 0 0 0 1 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 7 0 823.46644 P61313 P61313 32 38 RPL15 60S ribosomal protein L15 yes yes 2 0.05484 81.381 By MS/MS By matching 7 0 2 1 1 6173700 0 2281500 3892300 11044 991 11626 47853;47854 39921 39921 0 0 1310000 690660 QLSEVFIQLPSR IVDAVIKYKDSSSGRQLSEVFIQLPSRKEL SGRQLSEVFIQLPSRKELPEYYELIRKPVD R Q L S R K 0 1 0 0 0 2 1 0 0 1 2 0 0 1 1 2 0 0 0 1 0 0 12 0 1415.7773 P51531;P51532 P51532 1480 1491 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2 5.2937E-05 145.75 By MS/MS By MS/MS 1 0 2 1 1 8277700 0 2931100 5346600 11045 894;893 11627 47855;47856 39922;39923 39923 2 0 1432700 1152000 QLSHPANFGPR GKNEETLREEEEEKKQLSHPANFGPRKYCL EEKKQLSHPANFGPRKYCLRECICEVEGQV K Q L P R K 1 1 1 0 0 1 0 1 1 0 1 0 0 1 2 1 0 0 0 0 0 0 11 0 1222.6207 P82663 P82663 122 132 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 3 0.02422 60.064 By matching By MS/MS 7 0 2 1 1 10477000 0 2959300 7517900 11046 1097 11628 47857;47858 39924 39924 1 0 1699200 1334000 QLSILVHPDKNQDDADR IDPEVTDEEIKKRFRQLSILVHPDKNQDDA SILVHPDKNQDDADRAQKAFEAVDKAYKLL R Q L D R A 1 1 1 4 0 2 0 0 1 1 2 1 0 0 1 1 0 0 0 1 0 0 17 1 1962.9759 O75937 O75937 79 95 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 4 0.0012057 73.279 By MS/MS 6 0 1 1 9118300 0 0 9118300 11047 291 11629 47859 39925 39925 1 0 0 1364200 QLSLDINKLPGEK EEEEESRPMSYDEKRQLSLDINKLPGEKLG KRQLSLDINKLPGEKLGRVVHIIQAREPSL R Q L E K L 0 0 1 1 0 1 1 1 0 1 3 2 0 0 1 1 0 0 0 0 0 0 13 1 1453.814 O60885;P25440 P25440 649 661 BRD4;BRD2 Bromodomain-containing protein 4;Bromodomain-containing protein 2 no no 3 0.026315 57.434 By MS/MS 2 0 1 1 5651400 0 5651400 0 11048 658;239 11630 47860 39926 39926 1 0 2544900 0 QLSQAGSFSDGTHGGLR EAALRCGCLDEDTQRQLSQAGSFSDGTHGG SQAGSFSDGTHGGLRYEQLLALCVTDPETG R Q L L R Y 1 1 0 1 0 2 0 4 1 0 2 0 0 1 0 3 1 0 0 0 0 0 17 0 1716.818 P58107 P58107 431 447 EPPK1 Epiplakin yes yes 3 0.013419 49.606 By MS/MS 1 0 1 1 10068000 0 10068000 0 11049 958 11631 47861 39927 39927 1 0 4920900 0 QLSQSLLPAIVELAEDAK IISNLDCVNEVIGIRQLSQSLLPAIVELAE QSLLPAIVELAEDAKWRVRLAIIEYMPLLA R Q L A K W 3 0 0 1 0 2 2 0 0 1 4 1 0 0 1 2 0 0 0 1 0 0 18 0 1924.0517 P30153;P30154 P30153 399 416 PPP2R1A;PPP2R1B Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform yes no 2;3 1.1522E-06 110.25 By MS/MS 3.67 0.471 1 2 3 12641000 0 0 12641000 11050 712 11632 47862;47863;47864 39928;39929 39929 2 0 0 2100500 QLTVQMMQNPQILAALQER VEEEETGEETKLKARQLTVQMMQNPQILAA QMMQNPQILAALQERLDGLVETPTGYIESL R Q L E R L 2 1 1 0 0 5 1 0 0 1 3 0 2 0 1 0 1 0 0 1 0 0 19 0 2211.1504 P55209 P55209 37 55 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 2;3 6.0038E-80 244.36 By MS/MS By MS/MS 4.25 0.433 3 1 3 1 22150000 0 10220000 11930000 11051 940 11633 47865;47866;47867;47868 39930;39931;39932 39931 3 0 3259800 1948600 QLVAEQVTYQR SFRRDNNELLLFILKQLVAEQVTYQRNRFG FILKQLVAEQVTYQRNRFGAQQDTIEVPEK K Q L Q R N 1 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 1 2 0 0 11 0 1333.699 P49736 P49736 838 848 MCM2 DNA replication licensing factor MCM2 yes yes 2 1.8249E-05 150.27 By MS/MS 1.5 0.5 1 1 2 3105900 0 3105900 0 11052 864 11634 47869;47870 39933 39933 1 0 1420400 0 QLVDTTVELANK HFWQHRMALDRRNYRQLVDTTVELANKVGA NYRQLVDTTVELANKVGAAEIISRIVDDLK R Q L N K V 1 0 1 1 0 1 1 0 0 0 2 1 0 0 0 0 2 0 0 2 0 0 12 0 1329.714 O75533 O75533 832 843 SF3B1 Splicing factor 3B subunit 1 yes yes 2 4.7412E-12 178.84 By matching By MS/MS By MS/MS 1.83 0.687 2 3 1 2 1 3 59781000 7651500 18633000 33496000 11053 270 11635 47871;47872;47873;47874;47875;47876 39934;39935;39936 39934 3 7817800 8390700 7411500 QLVEQVEQIQK IAAKDKLSELQLRVRQLVEQVEQIQKEQNY LRVRQLVEQVEQIQKEQNYQRWREERFRQT R Q L Q K E 0 0 0 0 0 4 2 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 11 0 1340.73 Q9BVK6 Q9BVK6 170 180 TMED9 Transmembrane emp24 domain-containing protein 9 yes yes 2 1.6624E-19 192.91 By MS/MS By MS/MS 7 0 2 1 1 10196000 0 2143300 8052600 11054 1916 11636 47877;47878 39937;39938 39937 2 0 1230700 1428900 QLVSKPLSSSVSNNKR ESTDTKRQKPSVHSRQLVSKPLSSSVSNNK LVSKPLSSSVSNNKRIVSTKGKSATEYKNE R Q L K R I 0 1 2 0 0 1 0 0 0 0 2 2 0 0 1 5 0 0 0 2 0 0 16 2 1742.9639 Q96MU7 Q96MU7 68 83 YTHDC1 YTH domain-containing protein 1 yes yes 3;4 0.0085582 61.641 By MS/MS 2 0 2 2 2796200 0 0 2796200 11055 1813 11637 47879;47880 39939;39940 39940 2 0 0 631880 QLYEEEIR ESRLEGLTDEINFLRQLYEEEIRELQSQIS DEINFLRQLYEEEIRELQSQISDTSVVLSM R Q L I R E 0 1 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 8 0 1078.5295 CON__P05787;P05787;CON__Q9H552 CON__P05787 226 233 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.01394 89.046 By MS/MS By MS/MS 4.12 1.9 1 1 1 1 2 1 1 1 7 651110000 0 9858800 641250000 + 11056 49 11638 47881;47882;47883;47884;47885;47886;47887;47888 39941;39942;39943;39944;39945;39946 39943 6 0 2541300 105280000 QLYHLGVVEAYSGLTK NKKLAAQSCALSLVRQLYHLGVVEAYSGLT LYHLGVVEAYSGLTKKKEGETVEPYKVNLS R Q L T K K 1 0 0 0 0 1 1 2 1 0 3 1 0 0 0 1 1 0 2 2 0 0 16 0 1776.941 Q08211 Q08211 249 264 DHX9 ATP-dependent RNA helicase A yes yes 2;3 2.4198E-173 293.76 By MS/MS By MS/MS 2 0.756 2 3 2 1 6 150240000 0 38640000 111590000 11057 1182 11639 47889;47890;47891;47892;47893;47894;47895 39947;39948;39949;39950;39951 39950 5 0 17400000 24580000 QLYQTLTDYDIR TPALVFEHVNNTDFKQLYQTLTDYDIRFYM DFKQLYQTLTDYDIRFYMYEILKALDYCHS K Q L I R F 0 1 0 2 0 2 0 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 12 0 1527.7569 P68400;Q8NEV1 P68400 123 134 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.00016311 134.84 By MS/MS 5 0 1 1 14368000 0 0 14368000 11058 1080 11640 47896 39952 39952 1 0 0 2004100 QMADTGKLNTLLQR TNTIMDKMMVAGFKKQMADTGKLNTLLQRA KQMADTGKLNTLLQRAPQCLGKFIEIAARK K Q M Q R A 1 1 1 1 0 2 0 1 0 0 3 1 1 0 0 0 2 0 0 0 0 0 14 1 1587.8403 Q00839 Q00839 545 558 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 0.054162 58.752 By MS/MS 2.5 0.5 1 1 2 13255000 0 13255000 0 11059 1127 11641 47897;47898 39953 39953 0 0 5938700 0 QMEPFPLR EALCRECPPRQRALRQMEPFPLRVFVNPSL PRQRALRQMEPFPLRVFVNPSLRVLDSRLV R Q M L R V 0 1 0 0 0 1 1 0 0 0 1 0 1 1 2 0 0 0 0 0 0 0 8 0 1016.5113 Q9HBH1 Q9HBH1 144 151 PDF Peptide deformylase, mitochondrial yes yes 2 0.068324 68.422 By MS/MS 7 0 1 1 4233100 0 0 4233100 11060 2007 11642 47899 39954 39954 1 0 0 751140 QMFLTQTDTGDDR KDVDFMYVELIQRCKQMFLTQTDTGDDRVY CKQMFLTQTDTGDDRVYQMPSFLQSVASVL K Q M D R V 0 1 0 3 0 2 0 1 0 0 1 0 1 1 0 0 3 0 0 0 0 0 13 0 1526.6671 P78527 P78527 394 406 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.0368E-08 172.8 By MS/MS 1 0 1 1 5774500 0 0 5774500 11061 1089 11643 47900 39955 39955 1 0 0 1244200 QMQSSFTSSEQELER NKWKVKVDESHKTIKQMQSSFTSSEQELER QMQSSFTSSEQELERLRSENKDIENLRRER K Q M E R L 0 1 0 0 0 3 3 0 0 0 1 0 1 1 0 4 1 0 0 0 0 0 15 0 1785.7839 Q86UP2 Q86UP2 1177 1191 KTN1 Kinectin yes yes 2 3.2092E-07 164.9 By MS/MS 1.5 0.5 1 1 2 6924500 0 0 6924500 11062 1549 11644 47901;47902 39956 39956 1 0 0 1522500 QMSLLLR LIIYDDLSKQAVAYRQMSLLLRRPPGREAY SKQAVAYRQMSLLLRRPPGREAYPGDVFYL R Q M L R R 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 1 0 0 0 0 0 0 7 0 859.49496 P25705 P25705 323 329 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.067816 73.039 By MS/MS 4 0 1 1 7424000 0 7424000 0 11063 661 11645 47903 39957 39957 1 0 2463700 0 QMVIDVLHPGK IRTRKFMTNRLLQRKQMVIDVLHPGKATVP LQRKQMVIDVLHPGKATVPKTEIREKLAKM K Q M G K A 0 0 0 1 0 1 0 1 1 1 1 1 1 0 1 0 0 0 0 2 0 0 11 0 1235.6696 P62847 P62847 22 32 RPS24 40S ribosomal protein S24 yes yes 2;3 0.020723 70.816 By matching By MS/MS 7.5 0.764 4 1 1 2 4 44112000 0 12201000 31911000 11064 1038 11646 47904;47905;47906;47907;47908;47909 39958;39959;39960;39961 39961 4 0 7005600 5491200 QMVNEDEENQDTAK KRLEEEKRAFEEARRQMVNEDEENQDTAKI RQMVNEDEENQDTAKIFKGYRPGKLKLSFE R Q M A K I 1 0 2 2 0 2 3 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 14 0 1649.6839 Q0ZGT2 Q0ZGT2 287 300 NEXN Nexilin yes yes 2 0.0044321 89.403 By MS/MS 3 0 1 1 2419600 0 0 2419600 11065 1192 11647 47910 39962 39962 1 0 0 469290 QMWEILR QLSDKTNYDIVVRAKQMWEILRRKDCDKEK YDIVVRAKQMWEILRRKDCDKEKRVKLMSD K Q M L R R 0 1 0 0 0 1 1 0 0 1 1 0 1 0 0 0 0 1 0 0 0 0 7 0 974.50077 Q15397 Q15397 140 146 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.027939 94.407 By MS/MS By MS/MS 3 0 2 1 1 7571600 0 1966200 5605300 11066 1362 11648 47911;47912 39963;39964 39964 2 0 838200 1087200 QMYITYVR VCRHKKDTFLGPVLKQMYITYVRNCKFTSP FLGPVLKQMYITYVRNCKFTSPGALPFISF K Q M V R N 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 1 0 2 1 0 0 8 0 1072.5376 Q9Y3T9 Q9Y3T9 335 342 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.0086823 95.352 By MS/MS 3 0 1 1 15164000 0 0 15164000 11067 2277 11649 47913 39965 39965 1 0 0 2941200 QNASLQAAITDAEQR QEIQRLQSQTENLKKQNASLQAAITDAEQR QNASLQAAITDAEQRGELALKDAQAKVDEL K Q N Q R G 4 1 1 1 0 3 1 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 15 0 1614.7962 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 350 364 KRT78 Keratin, type II cytoskeletal 78 yes no 2 0.00038366 136.38 By MS/MS 1.5 0.5 1 1 2 5999000 5999000 0 0 + 11068 94 11650 47914;47915 39966 39966 1 6737200 0 0 QNCELFEQLGEYK DEFKPLVEEPQNLIKQNCELFEQLGEYKFQ IKQNCELFEQLGEYKFQNALLVRYTKKVPQ K Q N Y K F 0 0 1 0 1 2 3 1 0 0 2 1 0 1 0 0 0 0 1 0 0 0 13 0 1656.7454 CON__P02768-1;P02768 CON__P02768-1 414 426 ALB Serum albumin yes no 2 4.7466E-72 240.21 By MS/MS 5.4 2.06 1 1 1 1 1 5 110060000 110060000 0 0 + 11069 44 11651 47916;47917;47918;47919;47920 39967;39968;39969;39970 39969 4 68361000 0 0 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGK YEANFPANVMDVIARQNFTEPTAIQAQGWP SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ R Q N G K T 4 0 1 1 0 4 1 5 0 1 2 1 1 1 2 2 3 1 0 3 0 0 33 0 3357.6663 P17844 P17844 112 144 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 3 4.2109E-42 123.52 By MS/MS 3.67 0.471 1 2 3 22806000 0 22806000 0 11070 588 11652;11653 47921;47922;47923 39971;39972 39972 259 2 0 7667800 0 QNGDDPLLTYR KSNEDQSMGNWQIKRQNGDDPLLTYRFPPK QIKRQNGDDPLLTYRFPPKFTLKAGQVVTI R Q N Y R F 0 1 1 2 0 1 0 1 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1290.6204 P02545 P02545 472 482 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.00017467 138.11 By matching By MS/MS 3 0 2 1 1 48896000 1854700 0 47041000 11071 387 11654 47924;47925 39973 39973 1 2139900 0 9123800 QNIHLIR KNKELQKVQDIKEVKQNIHLIRAPLAGKGK VQDIKEVKQNIHLIRAPLAGKGKQLEEKMV K Q N I R A 0 1 1 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 7 0 892.52428 Q9UHA3 Q9UHA3 129 135 RSL24D1 Probable ribosome biogenesis protein RLP24 yes yes 2 0.019594 103.28 By MS/MS 7 0 1 1 17529000 0 0 17529000 11072 2149 11655 47926 39974 39974 1 0 0 3110400 QNINLSAPIMSR ANPISGHYDRSKSLKQNINLSAPIMSRFDL SLKQNINLSAPIMSRFDLFFILVDECNEVT K Q N S R F 1 1 2 0 0 1 0 0 0 2 1 0 1 0 1 2 0 0 0 0 0 0 12 0 1342.7027 Q14566 Q14566 518 529 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.02104 84.054 By MS/MS 2 0 1 1 21255000 0 21255000 0 11073 1305 11656 47927 39975 39975 1 0 9571200 0 QNLAEMGLAVDPNR CSHIRHAWDHAKSVRQNLAEMGLAVDPNRA RQNLAEMGLAVDPNRAVPLRKRKVKAMEVD R Q N N R A 2 1 2 1 0 1 1 1 0 0 2 0 1 0 1 0 0 0 0 1 0 0 14 0 1526.7511 Q9Y3C1 Q9Y3C1 51 64 NOP16 Nucleolar protein 16 yes yes 2 0.00041655 124.42 By MS/MS By matching 7 0 3 2 1 28932000 0 9147800 19784000 11074 2268 11657;11658 47928;47929;47930 39976;39977 39976 732 2 0 5252700 3510500 QNLEPLFEQYINNLR TKWTLLQEQGTKTVRQNLEPLFEQYINNLR QNLEPLFEQYINNLRRQLDSIVGERGRLDS R Q N L R R 0 1 3 0 0 2 2 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 15 0 1889.9636 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668 CON__P48668 208 222 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2;3 1.6269E-89 254.34 By MS/MS By MS/MS By MS/MS 5.47 2.73 2 1 4 2 3 3 8 1 6 172960000 42627000 2060700 128280000 + 11075 68;37;47;58 11659 47931;47932;47933;47934;47935;47936;47937;47938;47939;47940;47941;47942;47943;47944;47945 39978;39979;39980;39981;39982;39983;39984;39985;39986;39987;39988;39989;39990;39991;39992 39982 15 33955000 683890 21822000 QNLEPLFEQYINNLRR TKWTLLQEQGTKTVRQNLEPLFEQYINNLR NLEPLFEQYINNLRRQLDSIVGERGRLDSE R Q N R R Q 0 2 3 0 0 2 2 0 0 1 3 0 0 1 1 0 0 0 1 0 0 0 16 1 2046.0647 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668 CON__P48668 208 223 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 3 1.8763E-06 153.7 By MS/MS By MS/MS By matching 6.2 3.06 1 1 1 2 2 1 2 25043000 17411000 2937500 4694300 + 11076 68;37;47;58 11660 47946;47947;47948;47949;47950 39993;39994;39995 39994 3 12501000 1322800 1018500 QNLFLGSLTSR QEEQQRLAELSKSNKQNLFLGSLTSRLWPR KSNKQNLFLGSLTSRLWPRSKQP_______ K Q N S R L 0 1 1 0 0 1 0 1 0 0 3 0 0 1 0 2 1 0 0 0 0 0 11 0 1234.667 Q3ZCQ8 Q3ZCQ8 335 345 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes yes 2 0.0055671 99.855 By matching By MS/MS 5.67 0.471 1 2 2 1 15993000 0 9856500 6136900 11077 1416 11661 47951;47952;47953 39996 39996 1 0 2814200 918150 QNLIEELRK KVSLTKTAKKGLELKQNLIEELRKCVDTYK KGLELKQNLIEELRKCVDTYKYLFIFSVAN K Q N R K C 0 1 1 0 0 1 2 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 9 1 1141.6455 Q9UKD2 Q9UKD2 24 32 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.016079 89.542 By MS/MS 6.5 0.5 1 1 2 14622000 0 0 14622000 11078 2177 11662 47954;47955 39997 39997 1 0 0 2299800 QNLLSQSHAYQQFLR LDTGWNELHKMWENRQNLLSQSHAYQQFLR QNLLSQSHAYQQFLRDTKQAEAFLNNQEYV R Q N L R D 1 1 1 0 0 4 0 0 1 0 3 0 0 1 0 2 0 0 1 0 0 0 15 0 1831.9329 Q01082 Q01082 1162 1176 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.7942E-34 210.87 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 42525000 0 14755000 27770000 11079 1128 11663 47956;47957;47958;47959 39998;39999;40000 39999 3 0 7141200 5983400 QNLLSVGDYR LKMKPGRPRIKKDEKQNLLSVGDYRHRRTE KKDEKQNLLSVGDYRHRRTEQEEDEELLTE K Q N Y R H 0 1 1 1 0 1 0 1 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1163.5935 O60264 O60264 133 142 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 2.146E-16 178.94 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 1 2 38014000 1403000 12794000 23817000 11080 223 11664 47960;47961;47962;47963 40001;40002;40003 40003 3 1690500 5761200 5330600 QNLQSFPEPLIIPVLYLTSLTHR GLTYQEALESEKKARQNLQSFPEPLIIPVL PLIIPVLYLTSLTHRSRLHEICDDIFAYVK R Q N H R S 0 1 1 0 0 2 1 0 1 2 5 0 0 1 3 2 2 0 1 1 0 0 23 0 2678.4796 Q9NRL2 Q9NRL2 76 98 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 3 7.8925E-15 114.84 By matching By MS/MS 2.75 0.829 2 1 1 1 3 8809000 0 361150 8447800 11081 2045 11665 47964;47965;47966;47967 40004;40005 40004 2 0 162630 1810500 QNLSQFEAQAR KVLNGEKVDVRPATRQNLSQFEAQARKREC PATRQNLSQFEAQARKRECVRVPRGGIPPR R Q N A R K 2 1 1 0 0 3 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 11 0 1290.6317 Q8N684 Q8N684 163 173 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 2.5426E-10 173.39 By matching By MS/MS 3 1 1 1 1 1 27690000 2656600 0 25033000 11082 1610 11666 47968;47969 40006 40006 1 3200900 0 4088800 QNPFWWTHQR GWRVRTDFKQYQVLKQNPFWWTHQRHDGKL YQVLKQNPFWWTHQRHDGKLWNLNNYRTDM K Q N Q R H 0 1 1 0 0 2 0 0 1 0 0 0 0 1 1 0 1 2 0 0 0 0 10 0 1398.6582 Q6P2Q9 Q6P2Q9 1450 1459 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 0.00060047 133.58 By MS/MS 1.33 0.471 2 1 3 22240000 0 0 22240000 11083 1490 11667 47970;47971;47972 40007;40008 40007 2 0 0 4809800 QNRPIPQWIR HKTFKIKQFLAKKQKQNRPIPQWIRMKTGN AKKQKQNRPIPQWIRMKTGNKIRYNSKRRH K Q N I R M 0 2 1 0 0 2 0 0 0 2 0 0 0 0 2 0 0 1 0 0 0 0 10 1 1306.7258 Q59GN2;P62891 Q59GN2 19 28 RPL39P5;RPL39 Putative 60S ribosomal protein L39-like 5;60S ribosomal protein L39 yes no 2;3 8.5279E-61 228.39 By MS/MS By MS/MS 8.75 0.968 1 2 3 2 4 4 261240000 0 34601000 226640000 11084 1047 11668 47973;47974;47975;47976;47977;47978;47979;47980 40009;40010;40011;40012;40013;40014;40015 40013 7 0 105690000 172670000 QNTFLVLR LGQEVTLCGWIQYRRQNTFLVLRDFDGLVQ GWIQYRRQNTFLVLRDFDGLVQVIIPQDES R Q N L R D 0 1 1 0 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 1 0 0 8 0 989.56581 Q6PI48 Q6PI48 77 84 DARS2 Aspartate--tRNA ligase, mitochondrial yes yes 2 0.062378 74.929 By MS/MS 3 0 1 1 0 0 0 0 11085 1495 11669 47981 40016 40016 1 0 0 0 QNWSLLPAQAIYASVLPGELMR SICDGDLVDSQIRSKQNWSLLPAQAIYASV AQAIYASVLPGELMRGYMTQFPTFPSWLGK K Q N M R G 3 1 1 0 0 2 1 1 0 1 4 0 1 0 2 2 0 1 1 1 0 0 22 0 2456.2886 P35251 P35251 929 950 RFC1 Replication factor C subunit 1 yes yes 3 0.067428 22.123 By MS/MS 2 0 1 1 1668400 0 0 1668400 11086 746 11670 47982 40017 40017 1 0 0 377030 QPAIISQLDPVNER GLRAAMEALVVEVTKQPAIISQLDPVNERM KQPAIISQLDPVNERMLNMIRQISRPSAAG K Q P E R M 1 1 1 1 0 2 1 0 0 2 1 0 0 0 2 1 0 0 0 1 0 0 14 0 1578.8366 Q08211 Q08211 1117 1130 DHX9 ATP-dependent RNA helicase A yes yes 2;3 5.6762E-45 218.62 By MS/MS By MS/MS 2.4 1.28 3 3 2 1 1 3 7 114070000 0 51101000 62966000 11087 1182 11671 47983;47984;47985;47986;47987;47988;47989;47990;47991;47992 40018;40019;40020;40021;40022;40023 40019 6 0 23335000 13370000 QPAPTTIGGLNK TSTSKAKTQPTSLPKQPAPTTIGGLNKKPM LPKQPAPTTIGGLNKKPMSLASGLVPAAPP K Q P N K K 1 0 1 0 0 1 0 2 0 1 1 1 0 0 2 0 2 0 0 0 0 0 12 0 1195.6561 P27816 P27816 727 738 MAP4 Microtubule-associated protein 4 yes yes 2 0.012296 90.696 By MS/MS 1 0 1 1 10383000 0 0 10383000 11088 683 11672 47993 40024 40024 1 0 0 2237200 QPAQELSPTPGGTAHQALK GPPENPRETRVPGMRQPAQELSPTPGGTAH ELSPTPGGTAHQALKANNTGGGLPAAGPGD R Q P L K A 3 0 0 0 0 3 1 2 1 0 2 1 0 0 3 1 2 0 0 0 0 0 19 0 1929.9908 Q9UPN4 Q9UPN4 375 393 CEP131 Centrosomal protein of 131 kDa yes yes 3 0.00087692 66.777 By MS/MS 1.5 0.5 1 1 2 13139000 0 0 13139000 11089 2215 11673 47994;47995 40025 40025 1 0 0 2920200 QPDSPTALYHFNASLYLLR ALHAQVERLVQQAGRQPDSPTALYHFNASL PTALYHFNASLYLLRVLKGNTAEGCVHETQ R Q P L R V 2 1 1 1 0 1 0 0 1 0 4 0 0 1 2 2 1 0 2 0 0 0 19 0 2205.1219 Q9BQG0 Q9BQG0 914 932 MYBBP1A Myb-binding protein 1A yes yes 3 0.0030248 56.936 By matching By MS/MS 1.33 0.471 2 1 1 2 9863700 1315300 0 8548400 11090 1885 11674 47996;47997;47998 40026 40026 1 1315300 0 1909800 QPEDDLFDR EKRVFKNLQLFMENKQPEDDLFDRLNTGIL LFMENKQPEDDLFDRLNTGILNKHLQDLME K Q P D R L 0 1 0 3 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 0 1133.4989 P11387 P11387 559 567 TOP1 DNA topoisomerase 1 yes yes 2 0.0044494 98.033 By MS/MS 2 0.816 1 1 1 3 18154000 0 0 18154000 11091 523 11675 47999;48000;48001 40027 40027 1 0 0 3845500 QPEWLEEQQGR ASRELVKEPARAGDRQPEWLEEQQGRQFCS AGDRQPEWLEEQQGRQFCSTQAALQAMERE R Q P G R Q 0 1 0 0 0 3 3 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 11 0 1398.6528 Q14980 Q14980 948 958 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 5.1119E-05 144.66 By MS/MS 1 0 1 1 10782000 0 0 10782000 11092 1327 11676 48002 40028 40028 1 0 0 2323100 QPEYLDATGGTLHPYQMEGLNWLR PPETPTVDPTVKYERQPEYLDATGGTLHPY GTLHPYQMEGLNWLRFSWAQGTDTILADEM R Q P L R F 1 1 1 1 0 2 2 3 1 0 4 0 1 0 2 0 2 1 2 0 0 0 24 0 2788.3279 Q14839 Q14839 715 738 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 1.5184E-10 95.819 By MS/MS 1 0 1 1 14083000 0 0 14083000 11093 1321 11677 48003 40029 40029 1 0 0 3034300 QPFVQGLALYTPVVLPR STVVGVFTAPGLHLKQPFVQGLALYTPVVL FVQGLALYTPVVLPRSLDFTELDVAAEKID K Q P P R S 1 1 0 0 0 2 0 1 0 0 3 0 0 1 3 0 1 0 1 3 0 0 17 0 1897.0826 P01019 P01019 221 237 AGT Angiotensinogen;Angiotensin-1;Angiotensin-2;Angiotensin-3;Angiotensin-4;Angiotensin 1-9;Angiotensin 1-7;Angiotensin 1-5;Angiotensin 1-4 yes yes 2;3 0.0012461 91.858 By MS/MS 9 0 2 2 750100 750100 0 0 11094 369 11678 48004;48005 40030;40031 40030 2 421040 0 0 QPHGGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQGK DNYNSPVPPKHAGKKQPHGGQQKPSYGSGY YNQSPYSNYGPPQGKQKGYNHGQGSYSYSN K Q P G K Q 0 0 2 0 0 10 0 7 2 0 0 2 0 0 5 6 0 0 5 0 0 0 39 1 4278.9128 Q12906 Q12906 735 773 ILF3 Interleukin enhancer-binding factor 3 yes yes 5 5.0236E-16 67.871 By MS/MS By MS/MS 2 0 2 1 1 40904000 0 20918000 19986000 11095 1211 11679 48006;48007 40032;40033 40032 2 0 9419600 4516500 QPIELLSMK ETDIMRNEFERLAARQPIELLSMKRYELPA ERLAARQPIELLSMKRYELPAPSSGQKNDI R Q P M K R 0 0 0 0 0 1 1 0 0 1 2 1 1 0 1 1 0 0 0 0 0 0 9 0 1057.5842 O75934 O75934 77 85 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.0085407 90.709 By MS/MS By matching 6.67 0.471 1 2 2 1 44093000 0 22169000 21924000 11096 290 11680 48008;48009;48010 40034 40034 1 0 12258000 3890200 QPLALNVAYR LDLLGHYAVMNNPTRQPLALNVAYRRCLQI NNPTRQPLALNVAYRRCLQILAAGLFLPGS R Q P Y R R 2 1 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 10 0 1143.64 Q12905 Q12905 260 269 ILF2 Interleukin enhancer-binding factor 2 yes yes 2 0.0010041 110.81 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 285950000 0 149500000 136450000 11097 1210 11681 48011;48012;48013;48014;48015;48016 40035;40036;40037;40038 40036 4 0 42423000 19704000 QPLALNVAYRR LDLLGHYAVMNNPTRQPLALNVAYRRCLQI NPTRQPLALNVAYRRCLQILAAGLFLPGSV R Q P R R C 2 2 1 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 11 1 1299.7412 Q12905 Q12905 260 270 ILF2 Interleukin enhancer-binding factor 2 yes yes 3 0.0010495 98.943 By MS/MS 6 0.816 1 1 1 3 5415400 0 5415400 0 11098 1210 11682 48017;48018;48019 40039 40039 1 0 1753900 0 QPNVQDFQFFPPR RVSEPKAPKAPRPPKQPNVQDFQFFPPRLF PKQPNVQDFQFFPPRLFELLEKEILFYRKT K Q P P R L 0 1 1 1 0 3 0 0 0 0 0 0 0 3 3 0 0 0 0 1 0 0 13 0 1618.7892 O60264;P28370 O60264 768 780 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 0.0071806 94.309 By MS/MS 2 0 1 1 1443100 0 1443100 0 11099 223;693 11683 48020 40040 40040 1 0 649840 0 QPPIQSTAGAVPVR ______________________________ KQPPIQSTAGAVPVRNEKGEISMEKVKVKR K Q P V R N 2 1 0 0 0 2 0 1 0 1 0 0 0 0 3 1 1 0 0 2 0 0 14 0 1419.7834 P55081 P55081 10 23 MFAP1 Microfibrillar-associated protein 1 yes yes 2 0.00012323 154.24 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 17429000 0 9371900 8057500 11100 937 11684 48021;48022 40041;40042 40042 2 0 3110200 1562800 QPPIQSTAGAVPVRNEK ______________________________ PIQSTAGAVPVRNEKGEISMEKVKVKRYVS K Q P E K G 2 1 1 0 0 2 1 1 0 1 0 1 0 0 3 1 1 0 0 2 0 0 17 1 1790.9639 P55081 P55081 10 26 MFAP1 Microfibrillar-associated protein 1 yes yes 3 0.028659 43.955 By MS/MS 4 0 1 1 1639400 0 1639400 0 11101 937 11685 48023 40043 40043 1 0 544060 0 QPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR SGQGDPGSNPNKRQRQPPLLGDHPAEYGGP HDEGYGPPPPHYEGRRMGPPVGGHRRGPSR R Q P G R R 1 1 0 2 0 1 3 8 6 0 2 0 0 0 8 1 0 0 5 0 0 0 38 0 4173.8531 P14866 P14866 306 343 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 5 0.022802 21.502 By MS/MS 3.5 0.5 1 1 2 26571000 0 0 26571000 11102 565 11686 48024;48025 40044 40044 1 0 0 4633400 QPPVSPGTALVGSQK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK QPPVSPGTALVGSQKEPSEVPTPKRPRGRP K Q P Q K E 1 0 0 0 0 2 0 2 0 0 1 1 0 0 3 2 1 0 0 2 0 0 15 0 1464.7936 P17096 P17096 32 46 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 2 0.0058963 81.709 By MS/MS 8 0 1 1 4130200 0 4130200 0 11103 583 11687 48026 40045 40045 1 0 1879100 0 QPPVSPGTALVGSQKEPSEVPTPK EKDGTEKRGRGRPRKQPPVSPGTALVGSQK LVGSQKEPSEVPTPKRPRGRPKGSKNKGAA K Q P P K R 1 0 0 0 0 2 2 2 0 0 1 2 0 0 6 3 2 0 0 3 0 0 24 1 2429.2802 P17096 P17096 32 55 HMGA1 High mobility group protein HMG-I/HMG-Y yes yes 3 0.0018379 47.281 By MS/MS 8 0 1 1 6360900 0 6360900 0 11104 583 11688 48027 40046 40046 1 0 2894000 0 QPTIFQNK ______________________________ TERAYQKQPTIFQNKKRVLLGETGKEKLPR K Q P N K K 0 0 1 0 0 2 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 8 0 974.51853 P62280 P62280 13 20 RPS11 40S ribosomal protein S11 yes yes 2 0.010757 92.822 By MS/MS 7 0 1 1 40164000 0 40164000 0 11105 1017 11689 48028 40047 40047 1 0 23062000 0 QPTNPFLEMIK EGCVREITKKLGNPKQPTNPFLEMIKFLLE GNPKQPTNPFLEMIKFLLERIAPVHIDTES K Q P I K F 0 0 1 0 0 1 1 0 0 1 1 1 1 1 2 0 1 0 0 0 0 0 11 0 1316.6799 Q9NTI5 Q9NTI5 592 602 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.053107 73.067 By MS/MS 1.5 0.5 1 1 2 18243000 0 0 18243000 11106 2053 11690 48029;48030 40048 40048 1 0 0 4015000 QPVQVPVTLVR VPDISAFREGWRWVRQPVQVPVTLVRNDGI RWVRQPVQVPVTLVRNDGIIYSTSLTFTYT R Q P V R N 0 1 0 0 0 2 0 0 0 0 1 0 0 0 2 0 1 0 0 4 0 0 11 0 1234.7398 Q06330 Q06330 420 430 RBPJ Recombining binding protein suppressor of hairless yes yes 2 0.0016432 109.88 By matching By MS/MS By MS/MS 3.25 0.829 1 1 2 1 1 2 49013000 2089700 9543400 37380000 11107 1170 11691 48031;48032;48033;48034 40049;40050 40050 2 2517800 3167100 6304700 QPVYVVDVSK FGPIPLGSLGWKTVKQPVYVVDVSKGIVNA WKTVKQPVYVVDVSKGIVNAVKDPDANGKS K Q P S K G 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 4 0 0 10 0 1132.6128 Q16795 Q16795 238 247 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2 0.053 72.042 By matching By MS/MS 6 0 2 1 1 9185700 0 1396400 7789300 11108 1400 11692 48035;48036 40051 40051 1 0 483400 1165400 QPYAVSELAGHQTSAESWGTGR DIVNFVHTNLRKNNRQPYAVSELAGHQTSA LAGHQTSAESWGTGRAVARIPRVRGGGTHR R Q P G R A 3 1 0 0 0 2 2 3 1 0 1 0 0 0 1 3 2 1 1 1 0 0 22 0 2331.088 P36578 P36578 50 71 RPL4 60S ribosomal protein L4 yes yes 2;3 8.6451E-171 287.03 By MS/MS By MS/MS 4.21 1.7 1 1 3 3 3 1 2 4 10 442370000 0 202960000 239420000 11109 762 11693 48037;48038;48039;48040;48041;48042;48043;48044;48045;48046;48047;48048;48049;48050 40052;40053;40054;40055;40056;40057;40058;40059;40060;40061 40061 10 0 59894000 39158000 QQAAQAFIHNSLYGPGTNR YLAVRLKDQDLRDSRQQAAQAFIHNSLYGP QAFIHNSLYGPGTNRTTVNKFLSLANKRLP R Q Q N R T 3 1 2 0 0 3 0 2 1 1 1 0 0 1 1 1 1 0 1 0 0 0 19 0 2072.0188 Q9UMY1 Q9UMY1 187 205 NOL7 Nucleolar protein 7 yes yes 2;3 1.0574E-79 240.59 By matching By MS/MS 6 0 3 1 2 53125000 0 13331000 39794000 11110 2200 11694 48051;48052;48053 40062;40063 40062 2 0 4614900 5953500 QQAAYYAQTSPQGMPQHPPAPQGQ GGQPDYSAAWAEYYRQQAAYYAQTSPQGMP SPQGMPQHPPAPQGQ_______________ R Q Q G Q - 4 0 0 0 0 7 0 2 1 0 0 0 1 0 5 1 1 0 2 0 0 0 24 0 2580.1816 Q96AE4 Q96AE4 621 644 FUBP1 Far upstream element-binding protein 1 yes yes 3 6.8444E-12 100.46 By MS/MS By MS/MS 3 0 2 1 1 13226000 6276200 6949900 0 11111 1750 11695 48054;48055 40064;40065 40065 2 7241400 2962700 0 QQASHYLYVR SPLGYAAIPIKFSEKQQASHYLYVRAHGVR KFSEKQQASHYLYVRAHGVRQGTKSTWPQK K Q Q V R A 1 1 0 0 0 2 0 0 1 0 1 0 0 0 0 1 0 0 2 1 0 0 10 0 1263.636 Q9Y3A4 Q9Y3A4 34 43 RRP7A Ribosomal RNA-processing protein 7 homolog A yes yes 2;3 0.055085 71.501 By matching By MS/MS 6 0 4 2 2 21383000 0 6242200 15141000 11112 2262 11696 48056;48057;48058;48059 40066;40067 40067 2 0 2160800 2265200 QQDSQPEEVMDVLEMVENVK EVKMEEETEVRESEKQQDSQPEEVMDVLEM PEEVMDVLEMVENVKHVIADQEVMETNRVE K Q Q V K H 0 0 1 2 0 3 4 0 0 0 1 1 2 0 1 1 0 0 0 4 0 0 20 0 2346.0719 Q9H307 Q9H307 378 397 PNN Pinin yes yes 2;3 4.1679E-14 132.08 By MS/MS 1.5 0.5 2 2 4 4947100 0 0 4947100 11113 1978 11697 48060;48061;48062;48063 40068;40069 40069 2 0 0 1104600 QQEELLAEENQR RRKQEELQQLEQQRRQQEELLAEENQRLRE QRRQQEELLAEENQRLREQLQLLEEQHRAA R Q Q Q R L 1 1 1 0 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 12 0 1485.7059 Q15149 Q15149 2719 2730 PLEC Plectin yes yes 2 0.00077462 120.68 By MS/MS 1 0 1 1 4221300 0 4221300 0 11114 1348 11698 48064 40070 40070 1 0 2063300 0 QQEEMMR RQEEERRRREEEMRRQQEEMMRRQQEGFKG RREEEMRRQQEEMMRRQQEGFKGTFPDARE R Q Q M R R 0 1 0 0 0 2 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 7 0 950.39499 Q15233 Q15233 358 364 NONO Non-POU domain-containing octamer-binding protein yes yes 2 0.013384 114.54 By MS/MS 3 0 1 1 5334700 0 0 5334700 11115 1351 11699 48065 40071 40071 1 0 0 1034700 QQEGFKPNYMENR EEEMIRHREQEELRRQQEGFKPNYMENREQ RRQQEGFKPNYMENREQEMRMGDMGPRGAI R Q Q N R E 0 1 2 0 0 2 2 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 13 1 1639.7413 Q8WXF1 Q8WXF1 375 387 PSPC1 Paraspeckle component 1 yes yes 2;3 0.026481 104.79 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 8320100 0 5261300 3058800 11116 1695 11700 48066;48067 40072;40073 40073 2 0 1746000 593270 QQGDHSLKEHELLEQQKR QQQAALLMQQEERAKQQGDHSLKEHELLEQ DHSLKEHELLEQQKRAAVLLEQERQQEIAK K Q Q K R A 0 1 0 1 0 4 3 1 2 0 3 2 0 0 0 1 0 0 0 0 0 0 18 2 2202.1141 Q13435 Q13435 166 183 SF3B2 Splicing factor 3B subunit 2 yes yes 5 0.0057565 57.52 By MS/MS 1.5 0.5 1 1 2 6586500 0 0 6586500 11117 1248 11701 48068;48069 40074 40074 1 0 0 1466200 QQGLASYDYVR IIIIIEIIEKTEIIRQQGLASYDYVRRRLT EIIRQQGLASYDYVRRRLTAEDLFEARIIS R Q Q V R R 1 1 0 1 0 2 0 1 0 0 1 0 0 0 0 1 0 0 2 1 0 0 11 0 1298.6255 Q15149 Q15149 3771 3781 PLEC Plectin yes yes 2 0.00032712 121.73 By MS/MS 1 0 1 1 12720000 0 0 12720000 11118 1348 11702 48070 40075 40075 1 0 0 2740600 QQGNEPSQILSLTGDR LTVNSIGQLKIWDFRQQGNEPSQILSLTGD QGNEPSQILSLTGDRVPLHCVDRHPNQQHV R Q Q D R V 0 1 1 1 0 3 1 2 0 1 2 0 0 0 1 2 1 0 0 0 0 0 16 0 1741.8595 Q8NFH3 Q8NFH3 202 217 NUP43 Nucleoporin Nup43 yes yes 2 1.018E-05 154.28 By matching By MS/MS 4.5 1.12 1 1 1 1 2 2 13560000 4592400 0 8967800 11119 1641 11703 48071;48072;48073;48074 40076 40076 1 4419500 0 1279700 QQINEMHLLIQQAR QGIIACCNPVPPLVRQQINEMHLLIQQARE RQQINEMHLLIQQAREMPLLKSEVAAGVKK R Q Q A R E 1 1 1 0 0 4 1 0 1 2 2 0 1 0 0 0 0 0 0 0 0 0 14 0 1720.9043 Q01780 Q01780 564 577 EXOSC10 Exosome component 10 yes yes 3 0.038977 45.79 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 13370000 0 6892800 6477500 11120 1138 11704 48075;48076;48077 40077;40078 40077 2 0 3026800 1463800 QQIQNDLNQWK LEAETRVKQRLECEKQQIQNDLNQWKTQYS ECEKQQIQNDLNQWKTQYSRKEEAIRKIES K Q Q W K T 0 0 2 1 0 4 0 0 0 1 1 1 0 0 0 0 0 1 0 0 0 0 11 0 1413.7001 P15924 P15924 1858 1868 DSP Desmoplakin yes yes 2 3.2936E-07 158.61 By MS/MS By MS/MS By MS/MS 5.1 3.48 3 1 1 1 1 1 2 6 1 3 102890000 55579000 13454000 33859000 11121 572 11705 48078;48079;48080;48081;48082;48083;48084;48085;48086;48087 40079;40080;40081;40082;40083;40084 40084 6 63422000 6576100 11619000 QQIQSIQQSIER VIACSVTIKEGSQLKQQIQSIQQSIERLLV QLKQQIQSIQQSIERLLV____________ K Q Q E R L 0 1 0 0 0 5 1 0 0 3 0 0 0 0 0 2 0 0 0 0 0 0 12 0 1456.7634 P55769 P55769 114 125 NHP2L1 NHP2-like protein 1;NHP2-like protein 1, N-terminally processed yes yes 2 3.647E-25 197.06 By MS/MS By MS/MS By MS/MS 8.83 0.687 2 3 1 1 2 3 336830000 17895000 31302000 287630000 11122 943 11706 48088;48089;48090;48091;48092;48093 40085;40086;40087;40088;40089;40090 40085 6 10045000 24049000 101160000 QQISLATQMVR DMKQQHVIETLIGKKQQISLATQMVRMILK IGKKQQISLATQMVRMILKIDDIRKPGESE K Q Q V R M 1 1 0 0 0 3 0 0 0 1 1 0 1 0 0 1 1 0 0 1 0 0 11 0 1273.6813 P48643 P48643 515 525 CCT5 T-complex protein 1 subunit epsilon yes yes 2 0.0047628 101.9 By MS/MS 4 0 1 1 4380900 0 4380900 0 11123 845 11707 48094 40091 40091 1 0 1453900 0 QQLAPYSDDLR QELRDRARAHVETLRQQLAPYSDDLRQRLT ETLRQQLAPYSDDLRQRLTARLEALKEGGG R Q Q L R Q 1 1 0 2 0 2 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 11 0 1304.6361 CON__P15497 CON__P15497 184 194 yes yes 2 5.5228E-19 185.81 By MS/MS By MS/MS By MS/MS 7.58 1.71 1 2 3 2 2 2 6 1 5 739890000 168750000 11490000 559650000 + 11124 59 11708 48095;48096;48097;48098;48099;48100;48101;48102;48103;48104;48105;48106 40092;40093;40094;40095;40096;40097;40098;40099;40100;40101 40092 10 258210000 6597400 216770000 QQLAPYSDDLRQR QELRDRARAHVETLRQQLAPYSDDLRQRLT LRQQLAPYSDDLRQRLTARLEALKEGGGSL R Q Q Q R L 1 2 0 2 0 3 0 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 13 1 1588.7958 CON__P15497 CON__P15497 184 196 yes yes 3 0.0042973 79.089 By MS/MS 7 0 1 1 4690200 0 4690200 0 + 11125 59 11709 48107 40102 40102 1 0 2693200 0 QQLIPGVPFLLQALVR RFVLSPFSLDLSKTKQQLIPGVPFLLQALV QLIPGVPFLLQALVRDMSGSPASGIPVKVS K Q Q V R D 1 1 0 0 0 3 0 1 0 1 4 0 0 1 2 0 0 0 0 2 0 0 16 0 1791.0771 CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 376 391 yes no 2 0.016331 66.595 By MS/MS 3.5 0.5 1 1 2 3028400 0 0 3028400 + 11126 25 11710 48108;48109 40103 40103 1 0 0 576490 QQLPEQPFEK KDHHQPLGRAKGVEKQQLPEQPFEKAAFQK KGVEKQQLPEQPFEKAAFQKQNDTPKGPQP K Q Q E K A 0 0 0 0 0 3 2 0 0 0 1 1 0 1 2 0 0 0 0 0 0 0 10 0 1242.6245 P46087 P46087 758 767 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.0028548 104.2 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 26868000 0 11669000 15198000 11127 824 11711 48110;48111;48112 40104;40105 40105 2 0 5329300 3434500 QQLQLEHDQALAVLSAK ______________________________ LQLEHDQALAVLSAKQQEIDLLQKSKVREL R Q Q A K Q 3 0 0 1 0 4 1 0 1 0 4 1 0 0 0 1 0 0 0 1 0 0 17 0 1891.0163 O15034 O15034 9 25 RIMBP2 RIMS-binding protein 2 yes yes 2 0.00084126 94.616 By MS/MS By MS/MS 5 0 2 1 1 123500000 95074000 28422000 0 11128 162 11712 48113;48114 40106;40107;40108 40107 3 76166000 7326300 0 QQLSAEELDAQLDAYNAR GGARGRGRGAGRNSKQQLSAEELDAQLDAY SAEELDAQLDAYNARMDTS___________ K Q Q A R M 4 1 1 2 0 3 2 0 0 0 3 0 0 0 0 1 0 0 1 0 0 0 18 0 2033.9654 Q86V81 Q86V81 236 253 ALYREF THO complex subunit 4 yes yes 2;3 9.8462E-135 277.06 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 149850000 0 22277000 127570000 11129 1551 11713 48115;48116;48117;48118;48119 40109;40110;40111;40112;40113;40114 40111 6 0 7711400 19335000 QQLSSLITDLQSSISNLSQAK EAKLLAERGHFEEEKQQLSSLITDLQSSIS ITDLQSSISNLSQAKEELEQASQAHGARLT K Q Q A K E 1 0 1 1 0 4 0 0 0 2 4 1 0 0 0 6 1 0 0 0 0 0 21 0 2260.1911 Q14980 Q14980 462 482 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.024721 48.892 By MS/MS 1 0 1 1 3450700 0 0 3450700 11130 1327 11714 48120 40115 40115 1 0 0 743510 QQLSSLITDLQSSISNLSQAKEELEQASQAHGAR EAKLLAERGHFEEEKQQLSSLITDLQSSIS AKEELEQASQAHGARLTAQVASLTSELTTL K Q Q A R L 4 1 1 1 0 6 3 1 1 2 5 1 0 0 0 7 1 0 0 0 0 0 34 1 3666.8449 Q14980 Q14980 462 495 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 4 7.9059E-21 79.458 By MS/MS 1 0 1 1 4991000 0 0 4991000 11131 1327 11715 48121 40116 40116 1 0 0 1075400 QQMLENQMEVR DYGKDLTSVNILLKKQQMLENQMEVRKKEI LLKKQQMLENQMEVRKKEIEELQSQAQALS K Q Q V R K 0 1 1 0 0 3 2 0 0 0 1 0 2 0 0 0 0 0 0 1 0 0 11 0 1404.649 Q01082 Q01082 1422 1432 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.0045089 102.55 By MS/MS By MS/MS 1 0 2 1 1 18751000 0 6464200 12287000 11132 1128 11716 48122;48123 40117;40118 40118 2 0 3159600 2647300 QQMQDFFLAHKDEEWFR EAVKRYNDYKLDFRRQQMQDFFLAHKDEEW MQDFFLAHKDEEWFRSKYHPDEVGKRRQEA R Q Q F R S 1 1 0 2 0 3 2 0 1 0 1 1 1 3 0 0 0 1 0 0 0 0 17 1 2254.0266 Q9BXP5 Q9BXP5 182 198 SRRT Serrate RNA effector molecule homolog yes yes 4 0.0025935 65.477 By MS/MS 2 0 1 1 5432600 0 0 5432600 11133 1929 11717 48124 40119 40119 1 0 0 1227700 QQNELAELHANLAR KVAGIESHSELQISRQQNELAELHANLARA RQQNELAELHANLARALQQVQEKEVRAQKL R Q Q A R A 3 1 2 0 0 2 2 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 14 0 1605.8223 Q14980 Q14980 870 883 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00028238 150.15 By MS/MS 1.5 0.5 1 1 2 18839000 0 0 18839000 11134 1327 11718 48125;48126 40120 40120 1 0 0 4091700 QQNQELQEQLR KLQMEKAKTHYDAKKQQNQELQEQLRSLEQ DAKKQQNQELQEQLRSLEQLQKENKELRAE K Q Q L R S 0 1 1 0 0 5 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 11 0 1412.7008 Q14980 Q14980 1626 1636 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 1.2087E-09 168.8 By MS/MS By MS/MS 1 0 2 1 1 11971000 0 4403700 7567600 11135 1327 11719 48127;48128 40121;40122 40122 2 0 2152500 1630600 QQPPEPEWIGDGESTSPSDK ______________________________ PEWIGDGESTSPSDKVVKKGKKDKKIKKTF K Q Q D K V 0 0 0 2 0 2 3 2 0 1 0 1 0 0 4 3 1 1 0 0 0 0 20 0 2182.9655 Q8NE71 Q8NE71 7 26 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 6.0025E-07 101.43 By MS/MS 2 0 1 1 6786600 0 0 6786600 11136 1638 11720 48129 40123 40123 1 0 0 1533600 QQQEELEAEHGTGDKPAAPR YVGPRLSRRILQQARQQQEELEAEHGTGDK LEAEHGTGDKPAAPRERTTRLGPRMPQDGS R Q Q P R E 3 1 0 1 0 3 4 2 1 0 1 1 0 0 2 0 1 0 0 0 0 0 20 1 2190.0301 Q13895 Q13895 64 83 BYSL Bystin yes yes 4 0.00027422 68.567 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 24212000 0 3600600 20611000 11137 1276 11721 48130;48131;48132 40124;40125;40126 40124 3 0 928140 2991600 QQQLLNEENLR YQDKLARQRYEDQLKQQQLLNEENLRKQEE DQLKQQQLLNEENLRKQEESVQKQEAMRRA K Q Q L R K 0 1 2 0 0 3 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 11 0 1383.7106 Q5T9A4;Q9NVI7 Q9NVI7 195 205 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 2.145E-05 149.72 By MS/MS By MS/MS By MS/MS 3.25 0.433 3 1 1 2 1 57335000 0 19038000 38298000 11138 2066;1456 11722 48133;48134;48135;48136 40127;40128;40129;40130 40128 4 0 7280000 7427900 QQQVDIPLR QPRQGSPVAAGAPAKQQQVDIPLRLLVPTQ AGAPAKQQQVDIPLRLLVPTQYVGAIIGKE K Q Q L R L 0 1 0 1 0 3 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 1095.6037 Q9NZI8 Q9NZI8 191 199 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.00068518 133.12 By matching By MS/MS By MS/MS 4.62 1.49 3 1 1 2 1 1 5 2 182100000 6115400 99866000 76124000 11139 2104 11723 48137;48138;48139;48140;48141;48142;48143;48144 40131;40132;40133;40134;40135 40131 5 7055800 39430000 14678000 QQREDITQSAQHALR PCEKEATDAIGHLDRQQREDITQSAQHALR QQREDITQSAQHALRLAAFGQLHKVLGMDP R Q Q L R L 2 2 0 1 0 4 1 0 1 1 1 0 0 0 0 1 1 0 0 0 0 0 15 1 1779.8976 Q12906 Q12906 309 323 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 0.00011543 109.99 By MS/MS 2.75 0.829 2 1 1 4 32892000 0 32892000 0 11140 1211 11724 48145;48146;48147;48148 40136;40137 40137 2 0 14174000 0 QQSAQSQVSTTAENK GTGRSLSLKLIQQLRQQSAQSQVSTTAENK QQSAQSQVSTTAENKTTTTARLASARTLYE R Q Q N K T 2 0 1 0 0 4 1 0 0 0 0 1 0 0 0 3 2 0 0 1 0 0 15 0 1605.7594 Q9H0A0 Q9H0A0 433 447 NAT10 N-acetyltransferase 10 yes yes 2 0.00030554 120.57 By MS/MS 2 0 1 1 1849100 0 1849100 0 11141 1959 11725 48149 40138 40138 1 0 832690 0 QQTQHAVEGDCDIHVLK CHVLDPTPLANCSVRQQTQHAVEGDCDIHV TQHAVEGDCDIHVLKQDGQFSVLFTKCDSS R Q Q L K Q 1 0 0 2 1 3 1 1 2 1 1 1 0 0 0 0 1 0 0 2 0 0 17 0 1976.9374 CON__P12763 CON__P12763 104 120 yes yes 2;3;4 1.7123E-228 323.24 By MS/MS By MS/MS 5 1.18 1 3 2 3 1 4 6 269050000 216150000 0 52896000 + 11142 55 11726 48150;48151;48152;48153;48154;48155;48156;48157;48158;48159 40139;40140;40141;40142;40143 40141 5 170380000 0 8468000 QQVAFYGQTLGQAQAHSQEQ SSPPDYTMAWAEYYRQQVAFYGQTLGQAQA YGQTLGQAQAHSQEQ_______________ R Q Q E Q - 3 0 0 0 0 7 1 2 1 0 1 0 0 1 0 1 1 0 1 1 0 0 20 0 2218.0403 Q96I24 Q96I24 553 572 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 2.3608E-121 269.7 By matching By MS/MS 4 0 3 1 2 32060000 4735100 27325000 0 11143 1797 11727 48160;48161;48162 40144;40145 40145 2 3694200 9068200 0 QQVPSGESAILDR VCSTNDLKELLIFNKQQVPSGESAILDRVA NKQQVPSGESAILDRVADGMVFGALLPCEE K Q Q D R V 1 1 0 1 0 2 1 1 0 1 1 0 0 0 1 2 0 0 0 1 0 0 13 0 1398.7103 P09874 P09874 270 282 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00040567 124.67 By MS/MS By MS/MS 2.57 1.4 2 2 1 1 1 4 3 404910000 0 131340000 273570000 11144 492 11728 48163;48164;48165;48166;48167;48168;48169 40146;40147;40148;40149;40150;40151 40150 6 0 57851000 60845000 QQVQVVGLQER LLNRKTKLRVLEDGKQQVQVVGLQEREVKC EDGKQQVQVVGLQEREVKCVEDVLKLIDIG K Q Q E R E 0 1 0 0 0 4 1 1 0 0 1 0 0 0 0 0 0 0 0 3 0 0 11 0 1282.6993 O00139 O00139 392 402 KIF2A Kinesin-like protein KIF2A yes yes 2 3.5013E-05 147.4 By MS/MS By MS/MS 3 0 2 1 1 15536000 0 2881900 12654000 11145 104 11729 48170;48171 40152;40153 40153 2 0 1228600 2454200 QREEEIEAQEK KRKEREAKEMHERKRQREEEIEAQEKAKRE ERKRQREEEIEAQEKAKREREWQKNFEESR R Q R E K A 1 1 0 0 0 2 5 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 11 1 1387.6579 O75937 O75937 191 201 DNAJC8 DnaJ homolog subfamily C member 8 yes yes 2 0.020781 107.21 By MS/MS 6 0 1 1 6373900 0 0 6373900 11146 291 11730 48172 40154 40154 1 0 0 953610 QREMEEQMR QEEERRRREEEMMIRQREMEEQMRRQREES EEMMIRQREMEEQMRRQREESYSRMGYMDP R Q R M R R 0 2 0 0 0 2 3 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 9 1 1235.5387 P23246 P23246 582 590 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 7.0258E-31 199.89 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 34148000 0 18591000 15557000 11147 638 11731 48173;48174;48175;48176;48177 40155;40156;40157;40158;40159 40156 5 0 8348100 3017300 QRHELLLGAGSGPGAGQQQATPGALLQAGPPR QKRKGPELPLVPVKRQRHELLLGAGSGPGA QQATPGALLQAGPPRCSSLQAPIMLLSGHE R Q R P R C 5 2 0 0 0 5 1 7 1 0 5 0 0 0 4 1 1 0 0 0 0 0 32 1 3132.6541 Q96DI7 Q96DI7 20 51 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 4 2.134E-85 208.86 By MS/MS 5.5 0.5 1 1 2 21829000 0 21829000 0 11148 1767 11732 48178;48179 40160 40160 1 0 7252500 0 QRPSEIKDYSPYFK ANADLEVKIRDWYQRQRPSEIKDYSPYFKT RQRPSEIKDYSPYFKTIEDLRNKIIAATIE R Q R F K T 0 1 0 1 0 1 1 0 0 1 0 2 0 1 2 2 0 0 2 0 0 0 14 2 1756.8784 CON__P08779;P08779 CON__P08779 156 169 KRT16 Keratin, type I cytoskeletal 16 yes no 3 0.00012101 128.35 By MS/MS By MS/MS 7 2 1 1 1 1 25684000 16322000 0 9362400 + 11149 53 11733 48180;48181 40161;40162 40161 2 9161500 0 1305900 QRYEILTPNSIPK CRQGFPNRVVFQEFRQRYEILTPNSIPKGF FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Q R P K G 0 1 1 0 0 1 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 13 1 1557.8515 P35579 P35579 719 731 MYH9 Myosin-9 yes yes 3 0.0013707 97.716 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 57446000 0 46734000 10712000 11150 752 11734 48182;48183;48184 40163;40164;40165;40166 40164 4 0 22618000 2308000 QSDDEVYAPGLDIESSLK DPRWLEQRDRSIREKQSDDEVYAPGLDIES DEVYAPGLDIESSLKQLAERRTDIFGVEET K Q S L K Q 1 0 0 3 0 1 2 1 0 1 2 1 0 0 1 3 0 0 1 1 0 0 18 0 1964.9215 Q15459 Q15459 450 467 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.0052742 69.92 By MS/MS 2 0 1 1 5956200 0 0 5956200 11151 1369 11735 48185 40167 40167 1 0 0 1346000 QSESSHGWTGPSTGVR SRRSGSFLYQVSTHKQSESSHGWTGPSTGV SESSHGWTGPSTGVRQGSHHEQARDNSRHS K Q S V R Q 0 1 0 0 0 1 1 3 1 0 0 0 0 0 1 4 2 1 0 1 0 0 16 0 1671.7601 CON__P20930;P20930 CON__P20930 802 817 FLG Filaggrin yes no 3 0.0017703 73.166 By MS/MS 5.55 2.74 1 1 1 1 1 2 1 1 1 1 11 83126000 83126000 0 0 + 11152 62 11736 48186;48187;48188;48189;48190;48191;48192;48193;48194;48195;48196 40168;40169;40170 40170 3 97169000 0 0 QSGEAFVELGSEDDVK DGAAGVHFIYTREGRQSGEAFVELGSEDDV SGEAFVELGSEDDVKMALKKDRESMGHRYI R Q S V K M 1 0 0 2 0 1 3 2 0 0 1 1 0 1 0 2 0 0 0 2 0 0 16 0 1708.7792 P52597 P52597 53 68 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 2.219E-12 174.72 By MS/MS By MS/MS 5.25 1.09 1 2 1 1 3 37743000 3695100 0 34048000 11153 910 11737 48197;48198;48199;48200 40171;40172;40173;40174 40171 4 2960300 0 5090400 QSGSRGGSGGGGSISGGGYGSGGGSGGR GGYSSGSSSYGSGGRQSGSRGGSGGGGSIS ISGGGYGSGGGSGGRYGSGGGSKGGSISGG R Q S G R Y 0 2 0 0 0 1 0 16 0 1 0 0 0 0 0 7 0 0 1 0 0 0 28 1 2255.9864 CON__P35908;CON__P35908v2;P35908 CON__P35908 551 578 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3 0.012206 31.37 By MS/MS 3 2.16 1 1 1 3 2579700 2579700 0 0 + 11154 65;66 11738 48201;48202;48203 40175;40176 40176 2 3131600 0 0 QSHAASAAPQASSPPDYTMAWAEYYR SQPNYSKAWEDYYKKQSHAASAAPQASSPP SSPPDYTMAWAEYYRQQVAFYGQTLGQAQA K Q S Y R Q 7 1 0 1 0 2 1 0 1 0 0 0 1 0 3 4 1 1 3 0 0 0 26 0 2855.2609 Q96I24 Q96I24 527 552 FUBP3 Far upstream element-binding protein 3 yes yes 3 4.9177E-09 87.485 By MS/MS 3.5 0.5 1 1 2 7148900 0 7148900 0 11155 1797 11739 48204;48205 40177 40177 1 0 2559500 0 QSLEASLAETEGR VQALEIELQSQLALKQSLEASLAETEGRYC LKQSLEASLAETEGRYCVQLSQIQAQISAL K Q S G R Y 2 1 0 0 0 1 3 1 0 0 2 0 0 0 0 2 1 0 0 0 0 0 13 0 1389.6736 P13645;CON__P13645;CON__P02535-1 P13645 387 399 KRT10 Keratin, type I cytoskeletal 10 no no 2 1.2266E-106 267.39 By MS/MS By MS/MS By MS/MS 5.13 2.9 5 4 6 2 3 4 4 4 3 3 19 7 12 4636600000 2796500000 109160000 1731000000 + 11156 56;36 11740 48206;48207;48208;48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232;48233;48234;48235;48236;48237;48238;48239;48240;48241;48242;48243 40178;40179;40180;40181;40182;40183;40184;40185;40186;40187;40188;40189;40190;40191;40192;40193;40194;40195;40196;40197;40198;40199;40200;40201;40202;40203;40204;40205;40206;40207;40208;40209;40210;40211;40212;40213;40214;40215;40216;40217;40218;40219;40220;40221;40222;40223;40224;40225 40213 48 2566600000 62087000 545640000 QSLEYLEQVR RAALGRMCTVIKRQKQSLEYLEQVRQHLSR IKRQKQSLEYLEQVRQHLSRLPTIDPNTRT K Q S V R Q 0 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 10 0 1263.6459 Q9BZE4 Q9BZE4 146 155 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.00024652 140.75 By MS/MS By MS/MS 3 0 2 1 1 46761000 0 11695000 35066000 11157 1941 11741 48244;48245 40226;40227 40226 2 0 4985700 6801100 QSLGELIGTLNAAK RKFFVGGNWKMNGRKQSLGELIGTLNAAKV KQSLGELIGTLNAAKVPADTEVVCAPPTAY K Q S A K V 2 0 1 0 0 1 1 2 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1413.7827 P60174 P60174 57 70 TPI1 Triosephosphate isomerase yes yes 2 0.00039253 127.87 By MS/MS By MS/MS By MS/MS 7 0 3 1 1 1 27890000 1554500 4672200 21664000 11158 962 11742 48246;48247;48248 40228;40229;40230 40228 3 3350300 2682800 3844100 QSLHTYLR IESFSSRVVSLSEYRQSLHTYLRSKMSQVA VSLSEYRQSLHTYLRSKMSQVAPSLSALIG R Q S L R S 0 1 0 0 0 1 0 0 1 0 2 0 0 0 0 1 1 0 1 0 0 0 8 0 1016.5403 O00567 O00567 279 286 NOP56 Nucleolar protein 56 yes yes 2 0.00024584 136.16 By matching By MS/MS By MS/MS 3 0 3 1 1 1 25599000 1885500 5174500 18539000 11159 130 11743 48249;48250;48251 40231;40232 40231 2 2175500 2205900 3595800 QSLPPGLAVK YTLVITDKEKAEKLKQSLPPGLAVKELK__ AEKLKQSLPPGLAVKELK____________ K Q S V K E 1 0 0 0 0 1 0 1 0 0 2 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 P63173 P63173 58 67 RPL38 60S ribosomal protein L38 yes yes 2 0.0058792 96.027 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 185750000 0 10985000 174760000 11160 1064 11744 48252;48253;48254 40233;40234;40235;40236;40237;40238;40239;40240 40236 8 0 55577000 259520000 QSMAFSILNTPK QKKAAPASTKQADRRQSMAFSILNTPKKLG DRRQSMAFSILNTPKKLGNSLLRRGASKKA R Q S P K K 1 0 1 0 0 1 0 0 0 1 1 1 1 1 1 2 1 0 0 0 0 0 12 0 1335.6857 Q14980 Q14980 2046 2057 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0023236 109.15 By matching By MS/MS By MS/MS 3.67 2.69 3 2 1 1 2 3 44015000 1689400 12701000 29624000 11161 1327 11745 48255;48256;48257;48258;48259;48260 40241;40242;40243 40242 3 1689400 5221700 5417100 QSNASSDVEVEEK NNPKVKFSSQQAATKQSNASSDVEVEEKET TKQSNASSDVEVEEKETSVSKEDTDHEEKA K Q S E K E 1 0 1 1 0 1 3 0 0 0 0 1 0 0 0 3 0 0 0 2 0 0 13 0 1420.6318 O75475 O75475 101 113 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.00034316 142.08 By MS/MS 4 0 1 1 5464000 0 0 5464000 11162 262 11746 48261 40244 40244 1 0 0 892440 QSQHMTEVVR TPPPGTRVRAMAIYKQSQHMTEVVRRCPHH MAIYKQSQHMTEVVRRCPHHERCSDSDGLA K Q S V R R 0 1 0 0 0 2 1 0 1 0 0 0 1 0 0 1 1 0 0 2 0 0 10 0 1213.5874 P04637 P04637 165 174 TP53 Cellular tumor antigen p53 yes yes 3 0.02588 58.699 By MS/MS 5 1.41 1 1 1 1 1 5 7354300 0 0 7354300 11163 416 11747 48262;48263;48264;48265;48266 40245 40245 1 0 0 1217200 QSSATSSFGGLGGGSVR ______________________________ SATSSFGGLGGGSVRFGPGVAFRAPSIHGG R Q S V R F 1 1 0 0 0 1 0 5 0 0 1 0 0 1 0 5 1 0 0 1 0 0 17 0 1553.7434 CON__P08727;P08727 CON__P08727 8 24 KRT19 Keratin, type I cytoskeletal 19 yes no 2 5.5866E-20 194.06 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 117720000 0 41503000 76219000 + 11164 51 11748 48267;48268;48269 40246;40247 40247 2 0 10698000 10745000 QSSGASSSSFSSSR KSSRFSGGFGARDYRQSSGASSSSFSSSRA RQSSGASSSSFSSSRASSSRSGGGGHGSSR R Q S S R A 1 1 0 0 0 1 0 1 0 0 0 0 0 1 0 9 0 0 0 0 0 0 14 0 1360.5855 O00571 O00571 604 617 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 1.335E-05 162.93 By MS/MS By MS/MS 3 0 2 1 1 4436700 0 887200 3549500 11165 131 11749 48270;48271 40248;40249 40249 2 0 378220 688440 QSSSTNYTNELK SIKDRMAKYQAAVSKQSSSTNYTNELKASG VSKQSSSTNYTNELKASGGEIKIHKMEQKE K Q S L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 0 3 2 0 1 0 0 0 12 0 1370.6314 Q9UHB6 Q9UHB6 281 292 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 0.0049871 103.22 By MS/MS By matching 2.67 0.471 1 2 2 1 11418000 0 5279000 6139200 11166 2150 11750 48272;48273;48274 40250;40251 40251 2 0 2321700 1190700 QSSSYGPHGYGSGR QSPSPSRGRHESGSRQSSSYGPHGYGSGRS RQSSSYGPHGYGSGRSSSRGPYESGSGHSS R Q S G R S 0 1 0 0 0 1 0 4 1 0 0 0 0 0 1 4 0 0 2 0 0 0 14 0 1438.6226 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 554 567 HRNR Hornerin yes no 3 0.003342 75.316 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 26023000 26023000 0 0 + 11167 96 11751 48275;48276;48277;48278;48279;48280;48281;48282;48283;48284 40252;40253;40254;40255;40256;40257;40258;40259;40260;40261 40261 10 30853000 0 0 QSSYGQHGSGSSQSSGYGQYGSR SGQSSGFGQHESRSRQSSYGQHGSGSSQSS SGSSQSSGYGQYGSRETSGFGQHGLGSGQS R Q S S R E 0 1 0 0 0 4 0 6 1 0 0 0 0 0 0 8 0 0 3 0 0 0 23 0 2350.9799 CON__Q5D862;Q5D862 CON__Q5D862 540 562 FLG2 Filaggrin-2 yes no 3 7.7927E-23 163.18 By MS/MS By MS/MS 5.5 3.2 2 1 1 1 1 1 1 1 1 2 10 2 71165000 68450000 0 2715600 + 11168 90 11752 48285;48286;48287;48288;48289;48290;48291;48292;48293;48294;48295;48296 40262;40263;40264;40265;40266;40267;40268;40269;40270;40271;40272;40273 40262 11 75706000 0 3519000 QSSYSQQPYNNQGQQQNMESSGSQGGR QSGYSQSYGGYENQKQSSYSQQPYNNQGQQ GQQQNMESSGSQGGRAPSYDQPDYGQQDSY K Q S G R A 0 1 3 0 0 8 1 4 0 0 0 0 1 0 1 6 0 0 2 0 0 0 27 0 2974.2496 Q92804 Q92804 75 101 TAF15 TATA-binding protein-associated factor 2N yes yes 3 2.663E-54 186.82 By MS/MS 3 0 1 1 23388000 0 23388000 0 11169 1723 11753 48297 40274 40274 1 0 9970300 0 QSTGSAPQGPAYHGVNR MWQGRNDMTYNYANRQSTGSAPQGPAYHGV TGSAPQGPAYHGVNRTDEMLHTDQRANHEG R Q S N R T 2 1 1 0 0 2 0 3 1 0 0 0 0 0 2 2 1 0 1 1 0 0 17 0 1725.8183 O14497 O14497 1512 1528 ARID1A AT-rich interactive domain-containing protein 1A yes yes 3 0.0038704 61.649 By MS/MS 1 0 1 1 2550500 0 0 2550500 11170 134 11754 48298 40275 40275 1 0 0 549540 QSVEADINGLR ADDFRLKYENEVALRQSVEADINGLRRVLD VALRQSVEADINGLRRVLDELTLTKADLEM R Q S L R R 1 1 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1200.6099 P13645;CON__P13645;CON__Q2M2I5;Q2M2I5;CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;CON__P02535-1;CON__P08730-1 P13645 246 256 KRT10;KRT24;KRT13 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 13 no no 2 2.1097E-107 262.2 By MS/MS By MS/MS By MS/MS 4.42 2.64 4 3 3 3 3 3 2 1 2 11 5 8 2806000000 2092100000 59645000 654300000 + 11171 56;57;548;36;52 11755 48299;48300;48301;48302;48303;48304;48305;48306;48307;48308;48309;48310;48311;48312;48313;48314;48315;48316;48317;48318;48319;48320;48321;48322 40276;40277;40278;40279;40280;40281;40282;40283;40284;40285;40286;40287;40288;40289;40290;40291;40292;40293;40294;40295;40296;40297 40281 21 2099500000 25668000 117610000 QSVEADINGLRR ADDFRLKYENEVALRQSVEADINGLRRVLD ALRQSVEADINGLRRVLDELTLTKADLEMQ R Q S R R V 1 2 1 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 12 1 1356.711 P13645;CON__P13645;CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;CON__P02535-1;CON__P08730-1 P13645 246 257 KRT10;KRT13 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 13 no no 2;3 1.5956E-106 263.6 By MS/MS By MS/MS By MS/MS 4.71 2.81 8 5 6 6 6 4 6 2 1 5 22 12 15 5021300000 3219100000 258640000 1543600000 + 11172 56;57;548;36;52 11756 48323;48324;48325;48326;48327;48328;48329;48330;48331;48332;48333;48334;48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351;48352;48353;48354;48355;48356;48357;48358;48359;48360;48361;48362;48363;48364;48365;48366;48367;48368;48369;48370;48371 40298;40299;40300;40301;40302;40303;40304;40305;40306;40307;40308;40309;40310;40311;40312;40313;40314;40315;40316;40317;40318;40319;40320;40321;40322;40323;40324;40325;40326;40327;40328;40329;40330;40331;40332;40333;40334;40335;40336;40337;40338;40339;40340;40341;40342 40342 45 3694600000 115380000 479700000 QSVENDIHGLR ADDFRVKYETELAMRQSVENDIHGLRKVID LAMRQSVENDIHGLRKVIDDTNITRLQLET R Q S L R K 0 1 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 0 0 1 0 0 11 0 1266.6317 P05783 P05783 176 186 KRT18 Keratin, type I cytoskeletal 18 yes yes 2;3 5.0721E-54 211.52 By MS/MS By MS/MS 5 1 2 3 1 3 3 223700000 0 103500000 120200000 11173 436 11757 48372;48373;48374;48375;48376;48377 40343;40344;40345;40346;40347 40347 5 0 26963000 17551000 QSVENDIHGLRK ADDFRVKYETELAMRQSVENDIHGLRKVID AMRQSVENDIHGLRKVIDDTNITRLQLETE R Q S R K V 0 1 1 1 0 1 1 1 1 1 1 1 0 0 0 1 0 0 0 1 0 0 12 1 1394.7266 P05783 P05783 176 187 KRT18 Keratin, type I cytoskeletal 18 yes yes 2;3 4.1293E-18 194.06 By MS/MS By MS/MS 3.5 1.32 1 1 1 3 2 4 4 237780000 0 150720000 87067000 11174 436 11758 48378;48379;48380;48381;48382;48383;48384;48385 40348;40349;40350;40351;40352;40353 40353 6 0 40711000 13429000 QTAAQLILK IAFPSIGSGRNGFPKQTAAQLILKAISSYF RNGFPKQTAAQLILKAISSYFVSTMSSSIK K Q T L K A 2 0 0 0 0 2 0 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 9 0 984.59678 O75367 O75367 324 332 H2AFY Core histone macro-H2A.1 yes yes 2 0.00047069 124.08 By MS/MS By MS/MS 4.64 2.71 2 1 1 1 2 2 1 1 5 6 628580000 0 155880000 472700000 11175 253 11759 48386;48387;48388;48389;48390;48391;48392;48393;48394;48395;48396 40354;40355;40356;40357;40358;40359;40360 40355 7 0 45154000 120150000 QTAAQVTLK VAFPPFPSGRNCFPKQTAAQVTLKAISAHF RNCFPKQTAAQVTLKAISAHFDDSSASSLK K Q T L K A 2 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 9 0 958.54475 Q9P0M6 Q9P0M6 324 332 H2AFY2 Core histone macro-H2A.2 yes yes 2 0.050284 71.425 By MS/MS 5 0 1 1 2819900 0 2819900 0 11176 2117 11760 48397 40361 40361 1 0 726880 0 QTADFLQEYVTNK FHKEHFKYVGTKLPKQTADFLQEYVTNKTK PKQTADFLQEYVTNKTKKTEELRKTVEDLD K Q T N K T 1 0 1 1 0 2 1 0 0 0 1 1 0 1 0 0 2 0 1 1 0 0 13 0 1555.7518 Q9ULX6 Q9ULX6 427 439 AKAP8L A-kinase anchor protein 8-like yes yes 2 0.00053005 120.54 By MS/MS By MS/MS 3 0 2 1 1 14083000 0 2137700 11945000 11177 2195 11761 48398;48399 40362;40363 40363 2 0 911290 2316800 QTALVELLK ADICTLPDTEKQIKKQTALVELLKHKPKAT EKQIKKQTALVELLKHKPKATEEQLKTVME K Q T L K H 1 0 0 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 9 0 1013.6121 CON__P02769 CON__P02769 549 557 yes yes 2 0.0050625 96.936 By MS/MS By matching By MS/MS 4.38 3.13 3 2 1 2 1 1 1 2 6 3 4 300580000 251830000 22479000 26270000 + 11178 45 11762 48400;48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412 40364;40365;40366;40367;40368;40369;40370 40366 7 253050000 10132000 19481000 QTALVELVK ADICTLSEKERQIKKQTALVELVKHKPKAT ERQIKKQTALVELVKHKPKATKEQLKAVMD K Q T V K H 1 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 1 0 0 2 0 0 9 0 999.59645 CON__P02768-1;P02768 CON__P02768-1 550 558 ALB Serum albumin yes no 2 0.0030827 101.25 By MS/MS By matching 5.36 2.77 1 1 1 2 1 1 1 1 1 1 7 4 1015500000 1001400000 0 14097000 + 11179 44 11763 48413;48414;48415;48416;48417;48418;48419;48420;48421;48422;48423 40371;40372;40373;40374;40375 40375 5 826380000 0 2075200 QTATQLLK KVPPAINQFTQALDRQTATQLLKLAHKYRP FTQALDRQTATQLLKLAHKYRPETKQEKKQ R Q T L K L 1 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 8 0 901.52328 P62424 P62424 90 97 RPL7A 60S ribosomal protein L7a yes yes 2 0.00041526 130.27 By MS/MS By MS/MS 6 0 2 1 1 132980000 0 59851000 73124000 11180 1026 11764 48424;48425 40376;40377 40377 2 0 20718000 10940000 QTDVGITHFR MGHVLIPQSDLRWSKQTDVGITHFRSGMSH LRWSKQTDVGITHFRSGMSHEEDQLIPNLY K Q T F R S 0 1 0 1 0 1 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 0 10 0 1172.5938 Q6P2Q9 Q6P2Q9 1345 1354 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0087157 89.886 By MS/MS 1 0 1 1 11904000 0 11904000 0 11181 1490 11765 48426 40378 40378 1 0 5818600 0 QTDVLQQLSIQMANAK SFEWLSQMRFYFDPKQTDVLQQLSIQMANA TDVLQQLSIQMANAKFNYGFEYLGVQDKLV K Q T A K F 2 0 1 1 0 4 0 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 16 0 1786.9247 Q14204 Q14204 1850 1865 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0057125 78.903 By MS/MS 1 0 1 1 735560 0 735560 0 11182 1292 11766 48427 40379 40379 1 0 359530 0 QTDVTGEEELTK RGPLERETEKLLPERQTDVTGEEELTKGKQ PERQTDVTGEEELTKGKQDREQKQLLARDT R Q T T K G 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 0 3 0 0 1 0 0 12 0 1348.6358 Q14676 Q14676 843 854 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.0027917 108.1 By MS/MS 1 0 1 1 6162500 0 0 6162500 11183 1310 11767 48428 40380 40380 1 0 0 1327800 QTELFAHFIQPAAQK KMQTDRANRFEYLLKQTELFAHFIQPAAQK QTELFAHFIQPAAQKTPTSPLKMKPGRPRI K Q T Q K T 3 0 0 0 0 3 1 0 1 1 1 1 0 2 1 0 1 0 0 0 0 0 15 0 1727.8995 O60264 O60264 98 112 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 0 376.25 By MS/MS By MS/MS 1.67 0.471 2 4 2 4 74933000 0 16647000 58287000 11184 223 11768 48429;48430;48431;48432;48433;48434 40381;40382;40383;40384 40384 4 0 7496200 13047000 QTELFAHFIQPSAQK KMKADRAKRFEFLLKQTELFAHFIQPSAQK QTELFAHFIQPSAQKSPTSPLNMKLGRPRI K Q T Q K S 2 0 0 0 0 3 1 0 1 1 1 1 0 2 1 1 1 0 0 0 0 0 15 0 1743.8944 P28370 P28370 101 115 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2;3 1.1695E-17 191.93 By MS/MS 2 0 2 2 13079000 0 0 13079000 11185 693 11769 48435;48436 40385;40386 40386 2 0 0 2955700 QTETEMLYGSAPR EKERAKQERQLKNKKQTETEMLYGSAPRTP KKQTETEMLYGSAPRTPSKRRGLAPNTPGK K Q T P R T 1 1 0 0 0 1 2 1 0 0 1 0 1 0 1 1 2 0 1 0 0 0 13 0 1481.682 O43663 O43663 457 469 PRC1 Protein regulator of cytokinesis 1 yes yes 2 0.00034338 127.83 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 14299000 0 4567900 9731600 11186 206 11770 48437;48438;48439 40387;40388 40388 2 0 1755900 1887500 QTFSPFGQIMEIR YCGGIASGLTDQLMRQTFSPFGQIMEIRVF MRQTFSPFGQIMEIRVFPEKGYSFVRFSTH R Q T I R V 0 1 0 0 0 2 1 1 0 2 0 0 1 2 1 1 1 0 0 0 0 0 13 0 1552.7708 Q01085 Q01085 223 235 TIAL1 Nucleolysin TIAR no no 2 7.7823E-08 172.61 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 29684000 0 12244000 17441000 11187 1129 11771 48440;48441;48442;48443 40389;40390;40391 40391 3 0 3298800 2469700 QTGIVLNRPVLR GNREELVERLQSYTRQTGIVLNRPVLRGED YTRQTGIVLNRPVLRGEDGDKAAPPPMSAQ R Q T L R G 0 2 1 0 0 1 0 1 0 1 2 0 0 0 1 0 1 0 0 2 0 0 12 1 1364.8252 Q13435 Q13435 60 71 SF3B2 Splicing factor 3B subunit 2 yes yes 3 0.0058954 80.979 By MS/MS 2 0 1 1 24613000 0 0 24613000 11188 1248 11772 48444 40392 40392 1 0 0 5561900 QTIDNSQGAYQEAFDISK YFRYLAEVACGDDRKQTIDNSQGAYQEAFD DNSQGAYQEAFDISKKEMQPTHPIRLGLAL K Q T S K K 2 0 1 2 0 3 1 1 0 2 0 1 0 1 0 2 1 0 1 0 0 0 18 0 2013.928 P27348 P27348 140 157 YWHAQ 14-3-3 protein theta yes yes 2 0.00066805 93.494 By matching By MS/MS 7 0 2 1 1 9760600 0 531180 9229400 11189 676 11773 48445;48446 40393 40393 1 0 305000 1637700 QTIDNSQGAYQEAFDISKK YFRYLAEVACGDDRKQTIDNSQGAYQEAFD NSQGAYQEAFDISKKEMQPTHPIRLGLALN K Q T K K E 2 0 1 2 0 3 1 1 0 2 0 2 0 1 0 2 1 0 1 0 0 0 19 1 2142.0229 P27348 P27348 140 158 YWHAQ 14-3-3 protein theta yes yes 3 0.0012122 64.83 By MS/MS By MS/MS 7 0 2 1 1 13235000 0 3361700 9873000 11190 676 11774 48447;48448 40394;40395 40395 2 0 1930300 1751900 QTIQYIHPADAVK FNKAVIRVNVFREHRQTIQYIHPADAVKLG HRQTIQYIHPADAVKLGQAELVVIDEAAAI R Q T V K L 2 0 0 1 0 2 0 0 1 2 0 1 0 0 1 0 1 0 1 1 0 0 13 0 1482.7831 Q9H0A0 Q9H0A0 366 378 NAT10 N-acetyltransferase 10 yes yes 2 1.4952E-05 162.26 By MS/MS By MS/MS 2 0 2 1 1 13267000 0 3131400 10136000 11191 1959 11775 48449;48450 40396;40397 40396 2 0 1410100 2290500 QTLDFLR DKAINRKTGVHFHPKQTLDFLRSDMANSKI TGVHFHPKQTLDFLRSDMANSKITEEVKRS K Q T L R S 0 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 7 0 891.48142 Q6KC79 Q6KC79 2592 2598 NIPBL Nipped-B-like protein yes yes 2 0.030216 92.467 By MS/MS By MS/MS 1 0 2 1 1 5638900 0 1932800 3706100 11192 1480 11776 48451;48452 40398;40399 40398 2 0 944720 798530 QTLENERGELANEVK LEQTKRVKANLEKAKQTLENERGELANEVK QTLENERGELANEVKVLLQGKGDSEHKRKK K Q T V K V 1 1 2 0 0 1 4 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 15 1 1728.8642 P35579 P35579 1220 1234 MYH9 Myosin-9 yes yes 2;3 3.4206E-172 301.62 By MS/MS By MS/MS 1.71 0.7 3 3 1 4 3 243060000 0 178430000 64633000 11193 752 11777 48453;48454;48455;48456;48457;48458;48459 40400;40401;40402;40403 40401 4 0 86740000 13946000 QTLMWSATWPK EPQIRKIVDQIRPDRQTLMWSATWPKEVRQ RPDRQTLMWSATWPKEVRQLAEDFLKDYIH R Q T P K E 1 0 0 0 0 1 0 0 0 0 1 1 1 0 1 1 2 2 0 0 0 0 11 0 1347.6645 Q92841;P17844 P17844 274 284 DDX17;DDX5 Probable ATP-dependent RNA helicase DDX17;Probable ATP-dependent RNA helicase DDX5 no no 2 6.1439E-07 153.97 By MS/MS By MS/MS By MS/MS 3 0.894 1 1 5 3 1 4 5 216300000 5764800 99717000 110820000 11194 588;1725 11778;11779 48460;48461;48462;48463;48464;48465;48466;48467;48468;48469 40404;40405;40406;40407;40408;40409;40410;40411;40412 40405 260 9 6651300 38301000 21285000 QTLSTPGTIILGTIPVPK GKMELFSQLFIQAVRQTLSTPGTIILGTIP STPGTIILGTIPVPKGKPLALVEEIRNRKD R Q T P K G 0 0 0 0 0 1 0 2 0 3 2 1 0 0 3 1 4 0 0 1 0 0 18 0 1835.0768 Q9BSD7 Q9BSD7 131 148 NTPCR Cancer-related nucleoside-triphosphatase yes yes 2;3 0.0003488 96.734 By matching By matching By MS/MS 7 0 4 1 1 2 22297000 460530 3250300 18586000 11195 1896 11780 48470;48471;48472;48473 40413;40414 40413 2 992540 1866300 3298000 QTMLFSATQTR EEELKQIIKLLPTRRQTMLFSATQTRKVED PTRRQTMLFSATQTRKVEDLARISLKKEPL R Q T T R K 1 1 0 0 0 2 0 0 0 0 1 0 1 1 0 1 3 0 0 0 0 0 11 0 1282.634 Q9NVP1 Q9NVP1 359 369 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 5.8646E-27 203.97 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 36897000 0 15545000 21352000 11196 2069 11781 48474;48475;48476 40415;40416 40415 2 0 6666300 4141200 QTNLENLDQAFSVAER HRHKPLLIDMNKVYRQTNLENLDQAFSVAE TNLENLDQAFSVAERDLGVTRLLDPEDVDV R Q T E R D 2 1 2 1 0 2 2 0 0 0 2 0 0 1 0 1 1 0 0 1 0 0 16 0 1833.8857 Q15149 Q15149 350 365 PLEC Plectin yes yes 2 1.3126E-59 232.6 By MS/MS By MS/MS 1 0 2 1 1 10311000 0 5576200 4735000 11197 1348 11782 48477;48478 40417;40418 40417 2 0 2725600 1020200 QTNQLQYLLR NPPPPETSNPNKPKRQTNQLQYLLRVVLKT NKPKRQTNQLQYLLRVVLKTLWKHQFAWPF R Q T L R V 0 1 1 0 0 3 0 0 0 0 3 0 0 0 0 0 1 0 1 0 0 0 10 0 1275.6935 O60885 O60885 59 68 BRD4 Bromodomain-containing protein 4 yes yes 2 0.0004418 136.8 By MS/MS 1.5 0.5 1 1 2 4649500 0 0 4649500 11198 239 11783 48479;48480 40419 40419 1 0 0 1037200 QTPDFHTVIGDTVTGLLER EKHIEVEVRKFLALKQTPDFHTVIGDTVTG FHTVIGDTVTGLLERCKAEPSFYPRNCLMQ K Q T E R C 0 1 0 2 0 1 1 2 1 1 2 0 0 1 1 0 4 0 0 2 0 0 19 0 2098.0695 Q9H8H0 Q9H8H0 425 443 NOL11 Nucleolar protein 11 yes yes 3 2.9497E-09 112.74 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 12107000 0 1333500 10773000 11199 1995 11784 48481;48482;48483 40420;40421 40421 2 0 579770 2089500 QTPSDFLK ______________________________ ______________________________ K Q T L K Q 0 0 0 1 0 1 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 0 8 0 934.476 P62312 P62312 6 13 LSM6 U6 snRNA-associated Sm-like protein LSm6 yes yes 2 0.040996 75.189 By matching By MS/MS 10 0 2 1 1 25801000 1495600 0 24305000 11200 1021 11785 48484;48485 40422 40422 1 2724700 0 53158000 QTQTFTTYSDNQPGVLIQVYEGER VMTVLIKRNTTIPTKQTQTFTTYSDNQPGV DNQPGVLIQVYEGERAMTKDNNLLGKFELT K Q T E R A 0 1 1 1 0 4 2 2 0 1 1 0 0 1 1 1 4 0 2 2 0 0 24 0 2773.3195 P11142 P11142 424 447 HSPA8 Heat shock cognate 71 kDa protein yes yes 3 4.2449E-12 104.3 By MS/MS 3 0 1 1 9607900 0 0 9607900 11201 517 11786 48486 40423 40423 1 0 0 1863500 QTQVSVLPEGGETPLFK LKTASDFITKMDYPKQTQVSVLPEGGETPL QVSVLPEGGETPLFKQFFKNWRDPDQTDGL K Q T F K Q 0 0 0 0 0 2 2 2 0 0 2 1 0 1 2 1 2 0 0 2 0 0 17 0 1828.9571 P06396 P06396 374 390 GSN Gelsolin no no 2 7.6771E-06 128.61 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 18277000 0 8920400 9356300 + 11202 440 11787 48487;48488;48489 40424;40425;40426 40426 3 0 3923300 1814700 QTTQDAPEEVR YSSRDLPSHTKIKYRQTTQDAPEEVRNRDF IKYRQTTQDAPEEVRNRDFRRELEERERAA R Q T V R N 1 1 0 1 0 2 2 0 0 0 0 0 0 0 1 0 2 0 0 1 0 0 11 0 1272.5946 Q9P013 Q9P013 45 55 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2 0.0087392 93.667 By MS/MS By matching 6 0 2 1 1 13367000 0 3382100 9985200 11203 2109 11788 48490;48491 40427 40427 1 0 1170800 1493900 QTTVSNSQQAYQEAFEISK DYFRYLSEVASGDNKQTTVSNSQQAYQEAF SNSQQAYQEAFEISKKEMQPTHPIRLGLAL K Q T S K K 2 0 1 0 0 4 2 0 0 1 0 1 0 1 0 3 2 0 1 1 0 0 19 0 2158.0178 P31946 P31946 141 159 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2 0.00054296 86.467 By MS/MS 6 0.816 1 1 1 3 39838000 0 0 39838000 11204 724 11789 48492;48493;48494 40428 40428 1 0 0 6523200 QTTVSNSQQAYQEAFEISKK DYFRYLSEVASGDNKQTTVSNSQQAYQEAF NSQQAYQEAFEISKKEMQPTHPIRLGLALN K Q T K K E 2 0 1 0 0 4 2 0 0 1 0 2 0 1 0 3 2 0 1 1 0 0 20 1 2286.1128 P31946 P31946 141 160 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 3 0.00011749 74.364 By MS/MS 7.5 0.5 1 1 2 8470400 0 8470400 0 11205 724 11790 48495;48496 40429 40429 1 0 4699000 0 QTVEADVNGLR ADDFRTKYEHELALRQTVEADVNGLRRVLD LALRQTVEADVNGLRRVLDELTLARTDLEM R Q T L R R 1 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1200.6099 CON__P08779;P08779 CON__P08779 214 224 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.00032808 128.57 By MS/MS By matching By matching 5.4 3.38 2 1 1 1 1 1 1 2 5 1 4 60921000 47277000 2530300 11114000 + 11206 53 11791 48497;48498;48499;48500;48501;48502;48503;48504;48505;48506 40430;40431;40432;40433 40431 4 42593000 1236800 5688600 QTVEADVNGLRR ADDFRTKYEHELALRQTVEADVNGLRRVLD ALRQTVEADVNGLRRVLDELTLARTDLEMQ R Q T R R V 1 2 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 0 0 2 0 0 12 1 1356.711 CON__P08779;P08779 CON__P08779 214 225 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 2.4463E-70 211.52 By MS/MS By MS/MS 5.62 3.6 2 1 1 1 2 1 7 1 57446000 57446000 0 0 + 11207 53 11792 48507;48508;48509;48510;48511;48512;48513;48514 40434;40435;40436;40437;40438;40439 40435 6 49491000 0 0 QTVLESIR DIIREQIRLKAAEHRQTVLESIRTAGTLFG LKAAEHRQTVLESIRTAGTLFGEGFRAFVT R Q T I R T 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 8 0 944.5291 Q5T9A4;Q9NVI7 Q9NVI7 268 275 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.00087421 123.69 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 2 1 45680000 2786500 13675000 29218000 11208 2066;1456 11793 48515;48516;48517;48518 40440;40441;40442 40442 3 3215000 5354200 5666900 QTVMFSATFPR EPQVMRIVDNVRPDRQTVMFSATFPRAMEA RPDRQTVMFSATFPRAMEALARRILSKPIE R Q T P R A 1 1 0 0 0 1 0 0 0 0 0 0 1 2 1 1 2 0 0 1 0 0 11 0 1283.6332 Q7L014 Q7L014 555 565 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.0013217 111.06 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 12091000 0 7130500 4961000 11209 1520 11794 48519;48520;48521 40443;40444 40443 2 0 3373600 1121100 QTVMFTATMPPAVER EKMLANFESGKHKYRQTVMFTATMPPAVER QTVMFTATMPPAVERLARSYLRRPAVVYIG R Q T E R L 2 1 0 0 0 1 1 0 0 0 0 0 2 1 2 0 3 0 0 2 0 0 15 0 1677.8218 Q9BUQ8 Q9BUQ8 601 615 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.069904 56.122 By MS/MS 3.5 1.12 1 1 1 1 4 21451000 0 0 21451000 11210 1909 11795 48522;48523;48524;48525 40445 40445 1 0 0 3633100 QTWMDNMGR FTVETASREYKKMFKQTWMDNMGRAGEMEL YKKMFKQTWMDNMGRAGEMELKPFNGEDYT K Q T G R A 0 1 1 1 0 1 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 9 0 1137.4695 P11388 P11388 192 200 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0005485 117.4 By MS/MS 1 0 1 1 21844000 0 0 21844000 11211 524 11796 48526 40446 40446 1 0 0 4706600 QTYSTEPNNLK MVVRNCSSFLIKRNKQTYSTEPNNLKARNS KRNKQTYSTEPNNLKARNSFRYNGLIHRKT K Q T L K A 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 1 2 0 1 0 0 0 11 0 1293.6201 P46779 P46779 23 33 RPL28 60S ribosomal protein L28 yes yes 2 3.0686E-05 148.14 By MS/MS By MS/MS 7.6 1.36 1 2 1 1 1 4 21996000 0 3561000 18435000 11212 830 11797 48527;48528;48529;48530;48531 40447;40448;40449;40450 40449 4 0 2044800 7550000 QVAEAYEVLSDAK DKNPENKEEAERKFKQVAEAYEVLSDAKKR FKQVAEAYEVLSDAKKRDIYDKYGKEGLNG K Q V A K K 3 0 0 1 0 1 2 0 0 0 1 1 0 0 0 1 0 0 1 2 0 0 13 0 1421.7038 O75190;Q8WWF6 O75190 48 60 DNAJB6;DNAJB3 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 3 yes no 2 0.0042441 102.53 By MS/MS 7 0 1 1 13297000 0 0 13297000 11213 247 11798 48532 40451 40451 1 0 0 2359400 QVDFLNWEVTDHNLHELR ______________________________ FLNWEVTDHNLHELRVLRRYRLQRREDYTR K Q V L R V 0 1 2 2 0 1 2 0 2 0 3 0 0 1 0 0 1 1 0 2 0 0 18 0 2264.0974 Q9NV31 Q9NV31 15 32 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 4 0.012274 46.131 By MS/MS 7 0 1 1 4733200 0 0 4733200 11214 2063 11799 48533 40452 40452 1 0 0 839880 QVDQLTNDK RLGDLYEEEMRELRRQVDQLTNDKARVEVE MRELRRQVDQLTNDKARVEVERDNLAEDIM R Q V D K A 0 0 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 9 0 1059.5197 P08670 P08670 160 168 VIM Vimentin yes yes 2 1.7161E-32 205.36 By MS/MS By MS/MS 4.22 1.4 1 2 2 3 1 4 5 101810000 0 38270000 63535000 11215 476 11800 48534;48535;48536;48537;48538;48539;48540;48541;48542 40453;40454;40455;40456;40457;40458;40459;40460 40458 7 0 11989000 11413000 QVEDEKNSFR QEENRQKLSLSTKLKQVEDEKNSFREQLEE STKLKQVEDEKNSFREQLEEEEEAKHNLEK K Q V F R E 0 1 1 1 0 1 2 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 10 1 1250.5891 P35579 P35579 1333 1342 MYH9 Myosin-9 yes yes 2 0.0047802 115.7 By MS/MS 1 0 1 1 1914100 0 1914100 0 11216 752 11801 48543 40461 40461 1 0 935600 0 QVEGMEDWKQDSQLQK YNSKDRKSQPMGLWRQVEGMEDWKQDSQLQ VEGMEDWKQDSQLQKAREDIFMETLKDIVE R Q V Q K A 0 0 0 2 0 4 2 1 0 0 1 2 1 0 0 1 0 1 0 1 0 0 16 1 1947.8996 P25311 P25311 76 91 AZGP1 Zinc-alpha-2-glycoprotein yes yes 3 4.8819E-06 151.22 By MS/MS 7 1.73 2 2 1 1 1 1 8 126540000 126540000 0 0 11217 656 11802 48544;48545;48546;48547;48548;48549;48550;48551 40462;40463;40464;40465 40465 4 110080000 0 0 QVEHPLLSGLLYPGLQALDEEYLK VTQHDSKKAGAEVVKQVEHPLLSGLLYPGL LLYPGLQALDEEYLKVDAQFGGIDQRKIFT K Q V L K V 1 0 0 1 0 2 3 2 1 0 7 1 0 0 2 1 0 0 2 1 0 0 24 0 2724.4374 P54577 P54577 155 178 YARS Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed yes yes 3 0.00023839 61.039 By MS/MS 4 0 1 1 6501400 0 0 6501400 11218 928 11803 48552 40466 40466 1 0 0 1061900 QVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHR PFEQAKKVITMFVQRQVFAENKDEIALVLF PLSGGDQYQNITVHRHLMLPDFDLLEDIES R Q V H R H 2 1 3 4 0 3 2 4 1 2 3 1 0 2 1 1 3 0 1 3 0 0 37 1 4060.9767 P13010 P13010 45 81 XRCC5 X-ray repair cross-complementing protein 5 yes yes 4 2.8448E-05 39.375 By MS/MS 2.5 0.5 1 1 2 10931000 0 0 10931000 11219 542 11804 48553;48554 40467 40467 1 0 0 2296800 QVGSGVTTDQVQAEAK FSPRQIQVSWLREGKQVGSGVTTDQVQAEA VGSGVTTDQVQAEAKESGPTTYKVTSTLTI K Q V A K E 2 0 0 1 0 3 1 2 0 0 0 1 0 0 0 1 2 0 0 3 0 0 16 0 1616.8006 P01871;P0DOX6 P01871 154 169 IGHM Ig mu chain C region yes no 2 1.9694E-19 195.16 By MS/MS 5.33 2.62 1 1 1 3 14021000 14021000 0 0 11220 385 11805 48555;48556;48557 40468;40469 40469 2 10467000 0 0 QVGVGYVDSIQR IGVVGVKMSAVDGQRQVGVGYVDSIQRKLG GQRQVGVGYVDSIQRKLGLCEFPDNDQFSN R Q V Q R K 0 1 0 1 0 2 0 2 0 1 0 0 0 0 0 1 0 0 1 3 0 0 12 0 1319.6834 P43246 P43246 160 171 MSH2 DNA mismatch repair protein Msh2 yes yes 2 0.00063221 123.11 By MS/MS By MS/MS 2 0 2 1 1 12169000 0 4810200 7359300 11221 813 11806 48558;48559 40470;40471 40471 2 0 2166100 1663100 QVHLTHFELEGLR NGQVWDPQCAPRKDRQVHLTHFELEGLRCL DRQVHLTHFELEGLRCLVDKLESLPLHKKC R Q V L R C 0 1 0 0 0 1 2 1 2 0 3 0 0 1 0 0 1 0 0 1 0 0 13 0 1577.8314 Q9Y2K7 Q9Y2K7 450 462 KDM2A Lysine-specific demethylase 2A yes yes 3 0.064683 38.511 By MS/MS 2 0 1 1 4805200 0 0 4805200 11222 2241 11807 48560 40472 40472 1 0 0 1085900 QVHPDTGISSK SRKESYSIYVYKVLKQVHPDTGISSKAMGI KVLKQVHPDTGISSKAMGIMNSFVNDIFER K Q V S K A 0 0 0 1 0 1 0 1 1 1 0 1 0 0 1 2 1 0 0 1 0 0 11 0 1167.5884 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814;Q8N257 P06899 48 58 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 2 1.5571E-13 179.1 By MS/MS By MS/MS 7 1.73 1 1 2 2 2 1 1 3 7 387830000 0 73038000 314790000 11223 451;644;953;1601 11808 48561;48562;48563;48564;48565;48566;48567;48568;48569;48570 40473;40474;40475;40476;40477;40478;40479;40480;40481;40482 40481 10 0 34544000 71693000 QVHPDTGISSKAMGIMNSFVNDIFER SRKESYSIYVYKVLKQVHPDTGISSKAMGI AMGIMNSFVNDIFERIAGEASRLAHYNKRS K Q V E R I 1 1 2 2 0 1 1 2 1 3 0 1 2 2 1 3 1 0 0 2 0 0 26 1 2892.3898 P06899;Q16778;P33778;P23527;P57053;O60814;Q8N257 P06899 48 73 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 3 0.0001298 56.468 By MS/MS 8 0 1 1 9114900 0 0 9114900 11224 451;644;953;1601 11809 48571 40483 40483 1 0 0 1397400 QVIGTGSFFPK GTVWHKDCFTCSNCKQVIGTGSFFPKGEDF SNCKQVIGTGSFFPKGEDFYCVTCHETKFA K Q V P K G 0 0 0 0 0 1 0 2 0 1 0 1 0 2 1 1 1 0 0 1 0 0 11 0 1179.6288 Q13642 Q13642 134 144 FHL1 Four and a half LIM domains protein 1 yes yes 2 0.00032737 123.5 By MS/MS By MS/MS 5.75 1.09 1 2 1 2 2 134510000 0 31667000 102850000 11225 1265 11810 48572;48573;48574;48575 40484;40485;40486;40487;40488 40486 5 0 10908000 15888000 QVIIQGFR ______________________________ ______________________________ K Q V F R S 0 1 0 0 0 2 0 1 0 2 0 0 0 1 0 0 0 0 0 1 0 0 8 0 959.55525 Q9UQE7 Q9UQE7 5 12 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00095424 122.54 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 49137000 0 8560800 40577000 11226 2222 11811 48576;48577;48578 40489;40490;40491 40490 3 0 3855000 8991200 QVLALQSQLADTK EQQEEEEEARKNLEKQVLALQSQLADTKKK EKQVLALQSQLADTKKKVDDDLGTIESLEE K Q V T K K 2 0 0 1 0 3 0 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 13 0 1413.7827 P35580 P35580 1365 1377 MYH10 Myosin-10 yes yes 2 1.3472E-24 199.08 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 56971000 0 33782000 23189000 11227 753 11812 48579;48580;48581;48582 40492;40493;40494 40492 3 0 16312000 5017600 QVLALQSQLADTKK EQQEEEEEARKNLEKQVLALQSQLADTKKK KQVLALQSQLADTKKKVDDDLGTIESLEEA K Q V K K K 2 0 0 1 0 3 0 0 0 0 3 2 0 0 0 1 1 0 0 1 0 0 14 1 1541.8777 P35580 P35580 1365 1378 MYH10 Myosin-10 yes yes 2;3 0.0024254 107.18 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 33355000 0 22536000 10820000 11228 753 11813 48583;48584;48585;48586 40495;40496;40497 40496 3 0 10890000 2331300 QVLDLEDLVFTQGSHFMANK ETMDLDQGGEALAPRQVLDLEDLVFTQGSH EDLVFTQGSHFMANKRCQLPDGSFRRQRKG R Q V N K R 1 0 1 2 0 2 1 1 1 0 3 1 1 2 0 1 1 0 0 2 0 0 20 0 2291.1256 O75643 O75643 407 426 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 4.7637E-11 113.47 By MS/MS 1 0 1 1 23583000 0 0 23583000 11229 277 11814 48587 40498 40498 1 0 0 5081300 QVLDLEDLVFTQGSHFMANKR ETMDLDQGGEALAPRQVLDLEDLVFTQGSH DLVFTQGSHFMANKRCQLPDGSFRRQRKGY R Q V K R C 1 1 1 2 0 2 1 1 1 0 3 1 1 2 0 1 1 0 0 2 0 0 21 1 2447.2267 O75643 O75643 407 427 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 3.0135E-18 167.99 By MS/MS 1 0 1 1 10624000 0 0 10624000 11230 277 11815 48588 40499 40499 1 0 0 2289000 QVLDNLTMEK QNLRQGVDADINGLRQVLDNLTMEKSDLEM INGLRQVLDNLTMEKSDLEMQYETLQEELM R Q V E K S 0 0 1 1 0 1 1 0 0 0 2 1 1 0 0 0 1 0 0 1 0 0 10 0 1189.6013 P35527;CON__P35527 P35527 262 271 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.5491E-38 209.86 By MS/MS By MS/MS By MS/MS 5.05 2.81 4 4 6 4 5 2 5 2 2 4 16 12 10 3476800000 2581800000 135650000 759260000 + 11231 750 11816;11817 48589;48590;48591;48592;48593;48594;48595;48596;48597;48598;48599;48600;48601;48602;48603;48604;48605;48606;48607;48608;48609;48610;48611;48612;48613;48614;48615;48616;48617;48618;48619;48620;48621;48622;48623;48624;48625;48626 40500;40501;40502;40503;40504;40505;40506;40507;40508;40509;40510;40511;40512;40513;40514;40515;40516;40517;40518;40519;40520;40521;40522;40523;40524;40525;40526;40527;40528;40529;40530 40501 339 31 2681400000 73428000 419180000 QVLEGEEIAYK NSDKDQSLGNWRIKRQVLEGEEIAYKFTPK RIKRQVLEGEEIAYKFTPKYILRAGQMVTV R Q V Y K F 1 0 0 0 0 1 3 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 11 0 1277.6503 Q03252 Q03252 506 516 LMNB2 Lamin-B2 yes yes 2 0.011382 89.029 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 73595000 0 9573800 64021000 11232 1156 11818 48627;48628;48629;48630 40531;40532;40533 40531 3 0 4112500 12771000 QVLSNTLDNIAYIMPGL ACLTTQLPELNGCPKQVLSNTLDNIAYIMP LSNTLDNIAYIMPGL_______________ K Q V G L - 1 0 2 1 0 1 0 1 0 2 3 0 1 0 1 1 1 0 1 1 0 0 17 0 1860.9655 Q9UGU5 Q9UGU5 585 601 HMGXB4 HMG domain-containing protein 4 yes yes 2 7.4919E-06 130.01 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 8515500 0 1356800 7158600 11233 2145 11819 48631;48632;48633 40534;40535 40535 2 0 450290 1351600 QVPIAPVHLSSEDGGDR QRWHQVETTPLREEKQVPIAPVHLSSEDGG PIAPVHLSSEDGGDRLSTHELTSLLEKELE K Q V D R L 1 1 0 2 0 1 1 2 1 1 1 0 0 0 2 2 0 0 0 2 0 0 17 0 1775.8802 Q6WCQ1 Q6WCQ1 653 669 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.019443 45.384 By MS/MS 2 0 1 1 9687600 0 0 9687600 11234 1507 11820 48634 40536 40536 1 0 0 2189200 QVPNESFFNFFNPLK KQKHKGRGTVRTITKQVPNESFFNFFNPLK QVPNESFFNFFNPLKASGDGESLDEDSEFT K Q V L K A 0 0 3 0 0 1 1 0 0 0 1 1 0 4 2 1 0 0 0 1 0 0 15 0 1826.8992 Q99733 Q99733 283 297 NAP1L4 Nucleosome assembly protein 1-like 4 yes yes 2 0.00028827 132.25 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 24600000 0 3899700 20700000 11235 1862 11821 48635;48636;48637 40537;40538;40539;40540 40540 4 0 1294200 3469600 QVQNLVNK KELEKEREKILEYKRQVQNLVNKSKKIVQL KILEYKRQVQNLVNKSKKIVQLKPRNPDYR R Q V N K S 0 0 2 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 941.52943 P15924 P15924 434 441 DSP Desmoplakin yes yes 2 0.011169 92.319 By MS/MS By MS/MS 5.5 4.5 1 1 1 1 5321000 2767300 2553700 0 11236 572 11822 48638;48639 40541;40542 40541 2 5041500 1248200 0 QVQSLMVHQR VRSVVTTARMQVLKRQVQSLMVHQRKLEAE QVLKRQVQSLMVHQRKLEAELLQIEERHQE R Q V Q R K 0 1 0 0 0 3 0 0 1 0 1 0 1 0 0 1 0 0 0 2 0 0 10 0 1224.6397 Q969G3 Q969G3 230 239 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 3 0.053846 45.598 By MS/MS 4 0 1 1 4062200 0 0 4062200 11237 1741 11823 48640 40543 40543 1 0 0 663480 QVQSLTCEVDALK DALRQAKQESTEYRRQVQSLTCEVDALKGT RRQVQSLTCEVDALKGTNESLERQMREMEE R Q V L K G 1 0 0 1 1 2 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 13 0 1489.7446 P08670 P08670 322 334 VIM Vimentin yes yes 2 3.0108E-07 166.86 By matching By MS/MS By MS/MS 3.86 1.46 1 1 3 1 1 1 1 5 363060000 15864000 65498000 281690000 11238 476 11824 48641;48642;48643;48644;48645;48646;48647 40544;40545;40546;40547;40548 40544 5 12377000 21736000 45893000 QVQSQAHGLQMR LKEQMKAKRKEAELRQVQSQAHGLQMRLKY ELRQVQSQAHGLQMRLKYSQSDLEQTKTRH R Q V M R L 1 1 0 0 0 4 0 1 1 0 1 0 1 0 0 1 0 0 0 1 0 0 12 0 1381.6885 Q14683 Q14683 700 711 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 1.746E-25 202.05 By MS/MS 1.67 0.471 1 2 3 13560000 0 0 13560000 11239 1312 11825 48648;48649;48650 40549;40550;40551 40549 3 0 0 3015600 QVQTLQDELQK EQYSTSLAQSEAELKQVQTLQDELQKFLQD AELKQVQTLQDELQKFLQDHKEFESWLERS K Q V Q K F 0 0 0 1 0 4 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1328.6936 Q9UPN3 Q9UPN3 3876 3886 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes yes 2 0.032361 79.427 By MS/MS 1 0 1 1 0 0 0 0 11240 2214 11826 48651 40552 40552 1 0 0 0 QVQVALETAQR EAERRLRQAEVERARQVQVALETAQRSAEA ERARQVQVALETAQRSAEAELQSKRASFAE R Q V Q R S 2 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 11 0 1241.6728 Q15149 Q15149 1699 1709 PLEC Plectin yes yes 2 0.00032722 122.44 By MS/MS 1 0 1 1 14500000 0 14500000 0 11241 1348 11827 48652 40553 40553 1 0 7087600 0 QVSASELHTSGILGPETLR TEERLSKVSFRGLRRQVSASELHTSGILGP SELHTSGILGPETLRDLAQGTKTLQEVTEM R Q V L R D 1 1 0 0 0 1 2 2 1 1 3 0 0 0 1 3 2 0 0 1 0 0 19 0 1994.0433 P58107 P58107 2716 2734 EPPK1 Epiplakin yes no 3 2.6589E-09 114.34 By MS/MS By matching 1.5 0.5 1 1 1 1 13137000 0 11536000 1600500 11242 958 11828 48653;48654 40554 40554 1 0 5638800 361690 QVSDDLTER FDAGELITQRELVSRQVSDDLTERAATFGL RELVSRQVSDDLTERAATFGLILDDVSLTH R Q V E R A 0 1 0 2 0 1 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1061.4989 P35232 P35232 149 157 PHB Prohibitin yes yes 2 0.0071808 93.143 By matching By MS/MS 6 0 2 1 1 15279000 0 1225700 14053000 11243 740 11829 48655;48656 40555 40555 1 0 424310 2102500 QVSDLISVLR KTGTAYTFFTPNNIKQVSDLISVLREANQA PNNIKQVSDLISVLREANQAINPKLLQLVE K Q V L R E 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 0 2 0 0 10 0 1128.6503 P17844 P17844 452 461 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 1.7495E-29 197.66 By MS/MS By MS/MS 3 1.76 2 2 2 2 1 4 5 218750000 0 123230000 95512000 11244 588 11830 48657;48658;48659;48660;48661;48662;48663;48664;48665 40556;40557;40558;40559;40560 40558 5 0 44859000 18030000 QVSSHIQVLAR ARYIKLRTGKTRTRKQVSSHIQVLARRKSR RTRKQVSSHIQVLARRKSRDFHSKLKDQTA K Q V A R R 1 1 0 0 0 2 0 0 1 1 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1236.6939 P28347;Q99594;Q15562 P28347 89 99 TEAD1;TEAD3;TEAD2 Transcriptional enhancer factor TEF-1;Transcriptional enhancer factor TEF-5;Transcriptional enhancer factor TEF-4 no no 3 0.0043875 82.008 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 35124000 0 10760000 24364000 11245 692 11831 48666;48667;48668;48669;48670;48671 40561;40562;40563 40563 3 0 3023900 3669200 QVTESVSDSITVLP LPVEQGNFPYLQWVRQVTESVSDSITVLP_ RQVTESVSDSITVLP_______________ R Q V L P - 0 0 0 1 0 1 1 0 0 1 1 0 0 0 1 3 2 0 0 3 0 0 14 0 1473.7563 O60888 O60888 166 179 CUTA Protein CutA yes yes 2 0.0040691 91.265 By MS/MS 9 0 1 1 2087400 2087400 0 0 11246 240 11832 48672 40564 40564 1 1171600 0 0 QVTGQPQNASFVK LKSELGNQSPSTSSRQVTGQPQNASFVKRN SRQVTGQPQNASFVKRNRWWLLPLIAALAS R Q V V K R 1 0 1 0 0 3 0 1 0 0 0 1 0 1 1 1 1 0 0 2 0 0 13 0 1402.7205 Q5JTV8 Q5JTV8 322 334 TOR1AIP1 Torsin-1A-interacting protein 1 yes yes 2 4.8029E-05 96.009 By MS/MS 4 0 1 1 0 0 0 0 11247 1439 11833 48673 40565 40565 1 0 0 0 QVTITGSAASISLAQYLINAR AQIKIANPVEGSSGRQVTITGSAASISLAQ SAASISLAQYLINARLSSEKGMGCS_____ R Q V A R L 4 1 1 0 0 2 0 1 0 3 2 0 0 0 0 3 2 0 1 1 0 0 21 0 2176.1852 Q15365 Q15365 326 346 PCBP1 Poly(rC)-binding protein 1 yes yes 3 0.072534 21.901 By MS/MS 5 0 1 1 2958600 0 0 2958600 11248 1356 11834 48674 40566 40566 1 0 0 412670 QVTITGSAASISLAQYLINVR AQIKIANPVEGSTDRQVTITGSAASISLAQ SAASISLAQYLINVRLSSETGGMGSS____ R Q V V R L 3 1 1 0 0 2 0 1 0 3 2 0 0 0 0 3 2 0 1 2 0 0 21 0 2204.2165 Q15366 Q15366 334 354 PCBP2 Poly(rC)-binding protein 2 yes yes 3 0.00014377 72.21 By MS/MS 6 0 1 1 1056800 0 1056800 0 11249 1357 11835 48675 40567 40567 1 0 365830 0 QVVESAYEVIK LGTDKDKEQWKEVHKQVVESAYEVIKLKGY EVHKQVVESAYEVIKLKGYTSWAIGLSVAD K Q V I K L 1 0 0 0 0 1 2 0 0 1 0 1 0 0 0 1 0 0 1 3 0 0 11 0 1263.6711 P00338 P00338 233 243 LDHA L-lactate dehydrogenase A chain yes yes 2 0.0263 80.688 By matching By MS/MS 6 0 2 1 1 43408000 6069200 0 37339000 11250 356 11836 48676;48677 40568 40568 1 8081200 0 5586300 QVVNIPSFIVR HARVLIRQRHIRVRKQVVNIPSFIVRLDSQ RVRKQVVNIPSFIVRLDSQKHIDFSLRSPY K Q V V R L 0 1 1 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 3 0 0 11 0 1270.7398 P46781 P46781 140 150 RPS9 40S ribosomal protein S9 yes yes 2;3 5.3433E-36 213.85 By MS/MS By MS/MS 7.4 0.49 3 2 2 3 344920000 0 99683000 245240000 11251 831 11837 48678;48679;48680;48681;48682 40569;40570;40571;40572;40573 40569 5 0 56958000 43423000 QVVQGLLSETYLEAHR SVTGIFLPILRTGFRQVVQGLLSETYLEAH VVQGLLSETYLEAHRIVKMNKSEDDESGAG R Q V H R I 1 1 0 0 0 2 2 1 1 0 3 0 0 0 0 1 1 0 1 2 0 0 16 0 1841.9636 P33993 P33993 287 302 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.019722 48.053 By MS/MS 3 0 1 1 0 0 0 0 11252 733 11838 48683 40574 40574 1 0 0 0 QVVQTPNTVLSTPFR TPLHESDFSGVTPQRQVVQTPNTVLSTPFR QVVQTPNTVLSTPFRTPSNGAEGLTPRSGT R Q V F R T 0 1 1 0 0 2 0 0 0 0 1 0 0 1 2 1 3 0 0 3 0 0 15 0 1685.9101 Q99459 Q99459 400 414 CDC5L Cell division cycle 5-like protein yes yes 2 5.1322E-35 215.46 By MS/MS By MS/MS 3 0.816 2 2 2 3 3 34649000 0 23118000 11531000 11253 1843 11839 48684;48685;48686;48687;48688;48689 40575;40576;40577;40578;40579 40575 5 0 9494900 2240800 QVYIPNYNKPNPNQISVNNVK QQKRLKAAEAESKLKQVYIPNYNKPNPNQI YNKPNPNQISVNNVKAGVVNGTGAPGQSPG K Q V V K A 0 0 6 0 0 2 0 0 0 2 0 2 0 0 3 1 0 0 2 3 0 0 21 1 2442.2656 Q13330 Q13330 353 373 MTA1 Metastasis-associated protein MTA1 yes yes 3 0.00037577 67.396 By MS/MS 3 0 1 1 5576100 0 5576100 0 11254 1239 11840 48690 40580 40580 1 0 2377100 0 QVYYHVLGLGEPLALK SILLVFDYAELMGLKQVYYHVLGLGEPLAL VYYHVLGLGEPLALKSPRALRLFSHLRHPV K Q V L K S 1 0 0 0 0 1 1 2 1 0 4 1 0 0 1 0 0 0 2 2 0 0 16 0 1798.9982 Q8IXM6 Q8IXM6 169 184 NRM Nurim yes yes 3 0.051424 35.329 By matching By MS/MS 7 0 2 1 1 9817500 0 392580 9424900 11255 1585 11841 48691;48692 40581 40581 1 0 225420 1672400 QWAGLVEK RLRSWFEPLVEDMQRQWAGLVEKVQLALRP LVEDMQRQWAGLVEKVQLALRPSPTSPPSE R Q W E K V 1 0 0 0 0 1 1 1 0 0 1 1 0 0 0 0 0 1 0 1 0 0 8 0 929.49707 CON__Q03247;P02649 CON__Q03247 292 299 APOE Apolipoprotein E yes no 2 0.050482 87.435 By matching By MS/MS By MS/MS 5.25 0.829 1 1 2 1 1 2 156940000 789840 8155700 148000000 + 11256 72 11842 48693;48694;48695;48696 40582;40583 40582 1 616220 2823200 22031000 QWELLLEK FASETIRTRLMELHRQWELLLEKMREKGIK RLMELHRQWELLLEKMREKGIKLLQAQKLV R Q W E K M 0 0 0 0 0 1 2 0 0 0 3 1 0 0 0 0 0 1 0 0 0 0 8 0 1057.5808 Q13813 Q13813 130 137 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.0038748 103.56 By MS/MS 1 0 1 1 5768200 0 0 5768200 11257 1268 11843 48697 40584 40584 1 0 0 1242900 QWGWTQGR FRRYNGGVGRCAQAKQWGWTQGRWPKKSAE GRCAQAKQWGWTQGRWPKKSAEFLLHMLKN K Q W G R W 0 1 0 0 0 2 0 2 0 0 0 0 0 0 0 0 1 2 0 0 0 0 8 0 1017.4781 P18621 P18621 75 82 RPL17 60S ribosomal protein L17 yes yes 2 0.0042463 102.3 By MS/MS 7 0 1 1 50882000 0 50882000 0 11258 597 11844 48698 40585 40585 1 0 29216000 0 QWKPQLGFNR AVLKPSDWEKSSNGRQWKPQLGFNRDRRPV SSNGRQWKPQLGFNRDRRPVHLDQAAFRTL R Q W N R D 0 1 1 0 0 2 0 1 0 0 1 1 0 1 1 0 0 1 0 0 0 0 10 1 1272.6727 Q9H0D6 Q9H0D6 794 803 XRN2 5-3 exoribonuclease 2 yes yes 3 0.011112 73.233 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 10982000 0 1625200 9356500 11259 1960 11845 48699;48700;48701 40586;40587 40586 2 0 731860 2022600 QWLMTEALVNNPK ILDETQHLDIGLKQKQWLMTEALVNNPKIE QKQWLMTEALVNNPKIEVIDGKYAFKPKYN K Q W P K I 1 0 2 0 0 1 1 0 0 0 2 1 1 0 1 0 1 1 0 1 0 0 13 0 1542.7864 P29084 P29084 117 129 GTF2E2 Transcription initiation factor IIE subunit beta yes yes 2 0.00042622 123.63 By MS/MS 6 0 1 1 4798400 0 0 4798400 11260 697 11846 48702 40588 40588 1 0 0 717890 QWYESHYALPLGR LVKNCIVLIDSTPYRQWYESHYALPLGRKK YRQWYESHYALPLGRKKGAKLTPEEEEILN R Q W G R K 1 1 0 0 0 1 1 1 1 0 2 0 0 0 1 1 0 1 2 0 0 0 13 0 1618.7892 P62241 P62241 111 123 RPS8 40S ribosomal protein S8 yes yes 2;3 1.0433E-24 200.78 By matching By MS/MS By MS/MS 5.71 1.67 1 1 1 2 3 5 1 1 8 5 387280000 717700 70109000 316450000 11261 1008 11847 48703;48704;48705;48706;48707;48708;48709;48710;48711;48712;48713;48714;48715;48716 40589;40590;40591;40592;40593 40592 5 864740 35743000 55232000 QYEQQLSTMVYQQAK Q Y A K 1 0 0 0 0 5 1 0 0 0 1 1 1 0 0 1 1 0 2 1 0 0 15 0 1843.8774 REV__Q05397 yes yes 2 0.0098443 77.379 By MS/MS 5.25 0.829 1 1 2 4 31776000 0 0 31776000 + 11262 2331 11848 48717;48718;48719;48720 40594 40594 747 1 0 0 4621800 QYLEELQSVQR SQISSVNSDVEALRRQYLEELQSVQRELEV ALRRQYLEELQSVQRELEVLSEQYSQKCLE R Q Y Q R E 0 1 0 0 0 3 2 0 0 0 2 0 0 0 0 1 0 0 1 1 0 0 11 0 1391.7045 Q6WCQ1 Q6WCQ1 808 818 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 6.0616E-05 143.03 By MS/MS 2 0 1 1 4435800 0 0 4435800 11263 1507 11849 48721 40595 40595 1 0 0 1002400 QYLPIFAVQQELLTIIR ASSEFAKKKSILEQRQYLPIFAVQQELLTI LPIFAVQQELLTIIRDNSIVIVVGETGSGK R Q Y I R D 1 1 0 0 0 3 1 0 0 3 3 0 0 1 1 0 1 0 1 1 0 0 17 0 2044.1721 Q92620 Q92620 530 546 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 3 9.5489E-06 102.38 By MS/MS 2 0 1 1 923550 0 0 923550 11264 1713 11850 48722 40596 40596 1 0 0 208710 QYMFSSLK ECLVYVQLPFMEDLRQYMFSSLKNSKKYAP PFMEDLRQYMFSSLKNSKKYAPTEAQLNAV R Q Y L K N 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 2 0 0 1 0 0 0 8 0 1002.4845 P13010 P13010 432 439 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.034597 76.774 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 58180000 0 17924000 40256000 11265 542 11851 48723;48724;48725;48726 40597;40598 40597 2 0 7641000 7867000 QYNGVPLDGRPMNIQLVTSQIDAQR DVHFERKADALKAMKQYNGVPLDGRPMNIQ PMNIQLVTSQIDAQRRPAQSVNRGGMTRNR K Q Y Q R R 1 2 2 2 0 4 0 2 0 2 2 0 1 0 2 1 1 0 1 2 0 0 25 1 2812.429 Q86V81 Q86V81 165 189 ALYREF THO complex subunit 4 yes yes 3 1.4083E-28 135.58 By MS/MS By MS/MS 6.5 0.5 4 4 4 4 88556000 0 55079000 33477000 11266 1551 11852;11853 48727;48728;48729;48730;48731;48732;48733;48734 40599;40600;40601;40602;40603;40604 40604 649 6 0 20303000 5212800 QYPISLVLAPTR ALRAMKENGRYGRRKQYPISLVLAPTRELA RRKQYPISLVLAPTRELAVQIYEEARKFSY K Q Y T R E 1 1 0 0 0 1 0 0 0 1 2 0 0 0 2 1 1 0 1 1 0 0 12 0 1356.7765 O00571;O15523 O00571 265 276 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.00035213 128.81 By matching By MS/MS By MS/MS 3.17 0.687 1 3 2 1 3 2 185630000 2783700 115940000 66909000 11267 131 11854 48735;48736;48737;48738;48739;48740 40605;40606;40607;40608;40609 40608 5 3211700 45531000 12731000 QYQIVER EYYNCQQELTDDLHKQYQIVERIIAHSNQK ELTDDLHKQYQIVERIIAHSNQKSAAGYPD K Q Y E R I 0 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 934.48723 O14647;O14646 O14646 387 393 CHD2;CHD1 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 1 no no 2 0.030873 91.906 By MS/MS 1 0 1 1 2834100 0 0 2834100 11268 141;142 11855 48741 40610 40610 1 0 0 610650 QYYTLLNK MEKPSPLLVGREFVRQYYTLLNKAPEYLHR VGREFVRQYYTLLNKAPEYLHRFYGRNSSY R Q Y N K A 0 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 8 0 1041.5495 Q9UN86 Q9UN86 18 25 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 2 0.015595 87.754 By MS/MS 4 0 1 1 9621600 0 9621600 0 11269 2203 11856 48742 40611 40611 1 0 3193100 0 QYYTLLNQAPDMLHR MEKPSPLLVGREFVRQYYTLLNQAPDMLHR QYYTLLNQAPDMLHRFYGKNSSYVHGGLDS R Q Y H R F 1 1 1 1 0 2 0 0 1 0 3 0 1 0 1 0 1 0 2 0 0 0 15 0 1861.9145 Q13283 Q13283 18 32 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 8.8896E-109 202.16 By matching By MS/MS By MS/MS 4.75 1.36 2 5 1 2 2 1 5 6 170810000 2573600 78670000 89562000 11270 1236 11857 48743;48744;48745;48746;48747;48748;48749;48750;48751;48752;48753;48754 40612;40613;40614;40615;40616;40617;40618;40619 40618 8 2007900 26734000 15994000 RADHLEELLEQHR EAVSSLRTQHEAAVKRADHLEELLEQHRRP VKRADHLEELLEQHRRPTPSTK________ K R A H R R 1 2 0 1 0 1 3 0 2 0 3 0 0 0 0 0 0 0 0 0 0 0 13 1 1644.8332 Q9UPN4 Q9UPN4 1064 1076 CEP131 Centrosomal protein of 131 kDa yes yes 4 0.00018094 113.52 By MS/MS 2 0 1 1 24105000 0 0 24105000 11271 2215 11858 48755 40620 40620 1 0 0 5447200 RADLNQGIGEPQSPSR ALGSADCELSAKLLRRADLNQGIGEPQSPS ADLNQGIGEPQSPSRRVFNPYTEFKEFSRK R R A S R R 1 2 1 1 0 2 1 2 0 1 1 0 0 0 2 2 0 0 0 0 0 0 16 1 1723.8602 Q96C19 Q96C19 62 77 EFHD2 EF-hand domain-containing protein D2 yes yes 2;3 5.3962E-154 229.17 By MS/MS By MS/MS 6.25 0.433 3 1 2 2 37254000 0 23478000 13776000 11272 1757 11859 48756;48757;48758;48759 40621;40622;40623;40624;40625 40625 5 0 9340700 2061100 RADLNQGIGEPQSPSRR ALGSADCELSAKLLRRADLNQGIGEPQSPS DLNQGIGEPQSPSRRVFNPYTEFKEFSRKQ R R A R R V 1 3 1 1 0 2 1 2 0 1 1 0 0 0 2 2 0 0 0 0 0 0 17 2 1879.9613 Q96C19 Q96C19 62 78 EFHD2 EF-hand domain-containing protein D2 yes yes 3 0.00050085 89.374 By MS/MS 6 0 1 1 6320800 0 6320800 0 11273 1757 11860 48760 40626 40626 1 0 2188000 0 RAEDGSVIDYELIDQDAR SGDFRKLMVALAKGRRAEDGSVIDYELIDQ DGSVIDYELIDQDARDLYDAGVKRKGTDVP R R A A R D 2 2 0 4 0 1 2 1 0 2 1 0 0 0 0 1 0 0 1 1 0 0 18 1 2063.976 P07355 P07355 179 196 ANXA2 Annexin A2 yes yes 2;3 0 347.76 By MS/MS By matching By MS/MS 6.4 1.36 1 3 1 1 1 3 46227000 2348500 2351400 41527000 11274 459 11861 48761;48762;48763;48764;48765 40627;40628;40629;40630 40629 4 1318200 813980 6140400 RAEEIWQQSVIGDYLAR GGEREERGKLPESPKRAEEIWQQSVIGDYL EEIWQQSVIGDYLARFKNDRVKALKAMEMT K R A A R F 2 2 0 1 0 2 2 1 0 2 1 0 0 0 0 1 0 1 1 1 0 0 17 1 2033.033 P17480 P17480 487 503 UBTF Nucleolar transcription factor 1 yes yes 2;3 7.2206E-201 311 By matching By MS/MS 2.25 0.829 1 1 2 1 3 55683000 0 958250 54725000 11275 584 11862 48766;48767;48768;48769 40631;40632;40633 40633 3 0 468380 11295000 RAELWDTWK SLPRREPTVSSFYVKRAELWDTWKVAHLKE SSFYVKRAELWDTWKVAHLKEHRRVFQAMW K R A W K V 1 1 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 2 0 0 0 0 9 1 1203.6037 Q9BVI4 Q9BVI4 233 241 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.017487 88.819 By MS/MS 4 0 1 1 6029800 0 0 6029800 11276 1914 11863 48770 40634 40634 1 0 0 984860 RAETHENEPGPLTVGDELLSQFK EEQEPQEMDIDEILKRAETHENEPGPLTVG PGPLTVGDELLSQFKVANFSNMDEDDIELE K R A F K V 1 1 1 1 0 1 4 2 1 0 3 1 0 1 2 1 2 0 0 1 0 0 23 1 2566.2663 O14646 O14646 998 1020 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 4 0.066452 17.759 By MS/MS 1.5 0.5 1 1 2 4381700 0 0 4381700 11277 141 11864 48771;48772 40635 40635 0 0 0 956490 RAFLIEEQK YGGSMCAKCVRDRIKRAFLIEEQKIVVKVL VRDRIKRAFLIEEQKIVVKVLKAQAQSQKA K R A Q K I 1 1 0 0 0 1 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 9 1 1132.6241 P49207 P49207 93 101 RPL34 60S ribosomal protein L34 yes yes 2 0.037667 81.215 By matching By MS/MS 8 0 2 1 1 7465600 0 1739600 5726000 11278 850 11865 48773;48774 40636 40636 1 0 791480 877850 RAFVPQLR PSVVKVSYKGSPAARRAFVPQLRSGKFNVL KGSPAARRAFVPQLRSGKFNVLLTTYEYII R R A L R S 1 2 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 1 985.58213 P51532 P51532 842 849 SMARCA4 Transcription activator BRG1 yes yes 2 0.0018216 121.29 By MS/MS 1 0 1 1 5940400 0 0 5940400 11279 894 11866 48775 40637 40637 1 0 0 1280000 RAGDLLEDSPK DEPAKEKNEKGALKRRAGDLLEDSPKRPKE ALKRRAGDLLEDSPKRPKEAENPEGEEKEA R R A P K R 1 1 0 2 0 0 1 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 11 1 1199.6146 P51858 P51858 157 167 HDGF Hepatoma-derived growth factor yes yes 2 0.01873 89.827 By MS/MS 5.5 0.5 1 1 2 8744000 0 0 8744000 11280 899 11867 48776;48777 40638 40638 1 0 0 1256100 RAGELTEDEVER YAHVVLRKADIDLTKRAGELTEDEVERVIT LTKRAGELTEDEVERVITIMQNPRQYKIPD K R A E R V 1 2 0 1 0 0 4 1 0 0 1 0 0 0 0 0 1 0 0 1 0 0 12 1 1402.6688 P62269 P62269 55 66 RPS18 40S ribosomal protein S18 yes yes 2;3 6.7449E-127 280.17 By MS/MS By MS/MS 8 0 4 2 2 58376000 0 4256800 54119000 11281 1014 11868 48778;48779;48780;48781 40639;40640;40641 40641 3 0 1936700 8297000 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ELDGRRIRVDYSITKRAHTPTPGIYMGRPT GGGGGGGGGGGGGGRRRDSYYDRGYDRGYD K R A G R R 1 3 0 0 0 0 0 18 2 1 0 0 1 0 3 1 3 0 1 0 0 0 34 2 2946.3764 Q13595 Q13595 199 232 TRA2A Transformer-2 protein homolog alpha yes yes 5 1.0534E-16 76.259 By MS/MS 6 0 1 1 3043200 0 3043200 0 11282 1260 11869 48782 40642 40642 1 0 1053400 0 RALDIPLVK LWAPRPFNLRSGRTRRALDIPLVKNWYREH RSGRTRRALDIPLVKNWYREHCPAGQPVKV R R A V K N 1 1 0 1 0 0 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1023.6441 Q6P2Q9 Q6P2Q9 420 428 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.042286 79.474 By MS/MS 1 0 1 1 9246200 0 0 9246200 11283 1490 11870 48783 40643 40643 1 0 0 1992200 RALEQQVEEMK KDDVGKSVHELEKSKRALEQQVEEMKTQLE EKSKRALEQQVEEMKTQLEELEDELQATED K R A M K T 1 1 0 0 0 2 3 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 11 1 1359.6816 P35579 P35579 1528 1538 MYH9 Myosin-9 yes yes 2;3 8.121E-23 140.49 By MS/MS 1 0 2 2 3495100 0 3495100 0 11284 752 11871 48784;48785 40644;40645 40645 2 0 1708400 0 RALEYTIYNQELNETR EKEELAQYQKWDKMRRALEYTIYNQELNET ALEYTIYNQELNETRAKLDELSAKRETSGE R R A T R A 1 2 2 0 0 1 3 0 0 1 2 0 0 0 0 0 2 0 2 0 0 0 16 1 2011.9963 Q9UQE7 Q9UQE7 221 236 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.8211E-90 251.68 By MS/MS 2 0 1 1 6906000 0 0 6906000 11285 2222 11872 48786 40646 40646 1 0 0 1560600 RAPFDLFENR VEGQLEFRALLFVPRRAPFDLFENRKKKNN LFVPRRAPFDLFENRKKKNNIKLYVRRVFI R R A N R K 1 2 1 1 0 0 1 0 0 0 1 0 0 2 1 0 0 0 0 0 0 0 10 1 1263.636 P07900 P07900 346 355 HSP90AA1 Heat shock protein HSP 90-alpha yes yes 2 0.00043819 130.79 By MS/MS 3 0 1 1 6303700 0 0 6303700 11286 466 11873 48787 40647;40648 40648 2 0 0 1222600 RASPNSDDTVLSPQELQK RARARATRARRAVQKRASPNSDDTVLSPQE PNSDDTVLSPQELQKVLCLVEMSEKPYILE K R A Q K V 1 1 1 2 0 2 1 0 0 0 2 1 0 0 2 3 1 0 0 1 0 0 18 1 1983.9861 Q9UH62 Q9UH62 108 125 ARMCX3 Armadillo repeat-containing X-linked protein 3 yes yes 3 0.0078346 52.026 By MS/MS By matching 5.91 3.03 1 1 1 1 1 1 1 1 1 2 10 1 100920000 100420000 0 490240 11287 2147 11874 48788;48789;48790;48791;48792;48793;48794;48795;48796;48797;48798 40649 40649 1 92372000 0 1072200 RAVDLIQK LGSDYCESIRGIGPKRAVDLIQKHKSIEEI IRGIGPKRAVDLIQKHKSIEEIVRRLDPNK K R A Q K H 1 1 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 1 941.56581 P39748 P39748 245 252 FEN1 Flap endonuclease 1 yes yes 2 0.0084053 100.39 By MS/MS 6 0.816 1 1 1 3 8556300 0 8556300 0 11288 780 11875 48799;48800;48801 40650 40650 1 0 2500500 0 RAVLETIR LYGQPVAAGDTPAPRRAVLETIRTYLTITD GDTPAPRRAVLETIRTYLTITDTQLVNSLL R R A I R T 1 2 0 0 0 0 1 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 8 1 956.57671 Q5JTH9 Q5JTH9 711 718 RRP12 RRP12-like protein yes yes 2 0.00049532 133.23 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 9240900 0 4574200 4666700 11289 1438 11876 48802;48803 40651;40652 40652 2 0 2059800 1005500 RAYDIAGSTK KMQSLDKDIVALMVRRAYDIAGSTKDVKVF ALMVRRAYDIAGSTKDVKVFLNGNKLPVKG R R A T K D 2 1 0 1 0 0 0 1 0 1 0 1 0 0 0 1 1 0 1 0 0 0 10 1 1080.5564 P11388 P11388 242 251 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.0015425 112.36 By MS/MS 1.5 0.5 1 1 2 3512300 0 3512300 0 11290 524 11877 48804;48805 40653 40653 1 0 1660100 0 RAYGTNYIETLR DGWNQIQFNLLDFTRRAYGTNYIETLRVQI FTRRAYGTNYIETLRVQIHANCRIRRVYFS R R A L R V 1 2 1 0 0 0 1 1 0 1 1 0 0 0 0 0 2 0 2 0 0 0 12 1 1455.747 Q9Y6A4 Q9Y6A4 142 153 CFAP20 Cilia- and flagella-associated protein 20 yes yes 2 0.064861 76.522 By matching By MS/MS 7 0 2 1 1 12135000 0 2982000 9153100 11291 2310 11878 48806;48807 40654 40654 1 0 1712300 1624200 RDDGTGQLLLPLSDAR TDERLSYTQLLRRCRRDDGTGQLLLPLSDA DDGTGQLLLPLSDARKLTFRGLRKQITMEE R R D A R K 1 2 0 3 0 1 0 2 0 0 4 0 0 0 1 1 1 0 0 0 0 0 16 1 1725.901 Q15149 Q15149 4003 4018 PLEC Plectin yes yes 3 0.017223 48.907 By MS/MS By matching 2 0.816 1 1 1 2 1 6434200 0 4824100 1610100 11292 1348 11879 48808;48809;48810 40655 40655 1 0 2316000 312290 RDEFEFLEK EIQTLKEEIEQSLTKRDEFEFLEKASKLRG EQSLTKRDEFEFLEKASKLRGISTKPVYIP K R D E K A 0 1 0 1 0 0 3 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 9 1 1211.5823 Q14258 Q14258 302 310 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.022584 86.898 By MS/MS 3.5 1.12 1 1 1 1 4 35583000 0 0 35583000 11293 1297 11880 48811;48812;48813;48814 40656 40656 1 0 0 6089900 RDELLAQHAAGALGLPDLVAVLTR SVWDVLFSSYLSEARRDELLAQHAAGALGL AGALGLPDLVAVLTRVIEETEERLSKVSFR R R D T R V 5 2 0 2 0 1 1 2 1 0 6 0 0 0 1 0 1 0 0 2 0 0 24 1 2498.3969 P58107 P58107 2673 2696 EPPK1 Epiplakin yes no 2;3;4 2.2913E-53 210.47 By MS/MS By MS/MS 2 1 3 3 1 1 1 7 115580000 0 7736700 107840000 11294 958 11881 48815;48816;48817;48818;48819;48820;48821;48822 40657;40658;40659;40660;40661;40662;40663;40664;40665;40666 40662 10 0 3483900 22989000 RDELTLEGIK MTNKFMTDPIRILVKRDELTLEGIKQFFVA RILVKRDELTLEGIKQFFVAVEREEWKFDT K R D I K Q 0 1 0 1 0 0 2 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1172.6401 P38919 P38919 243 252 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.00040831 141.02 By matching By MS/MS By MS/MS 5.43 1.18 2 2 1 2 1 1 5 208330000 32752000 32076000 143510000 11295 775 11882 48823;48824;48825;48826;48827;48828;48829 40667;40668;40669;40670 40668 4 25552000 8268100 20817000 RDEPTGEVLSLVGK NLVLQADRSLIDRTRRDEPTGEVLSLVGKL RRDEPTGEVLSLVGKLEGTRMGDKAQRTKP R R D G K L 0 1 0 1 0 0 2 2 0 0 2 1 0 0 1 1 1 0 0 2 0 0 14 1 1498.7991 O75643 O75643 33 46 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.034911 74.46 By MS/MS 1 0 1 1 5064900 0 5064900 0 11296 277 11883 48830 40671 40671 1 0 2475600 0 RDHALLEEQSK IINSKWEKVQQLVPKRDHALLEEQSKQQSN LVPKRDHALLEEQSKQQSNEHLRRQFASQA K R D S K Q 1 1 0 1 0 1 2 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 11 1 1324.6735 O43707 O43707 633 643 ACTN4 Alpha-actinin-4 yes yes 3 0.00047009 107.17 By matching By MS/MS By MS/MS 2.29 1.03 2 2 2 1 1 4 2 30678000 468400 26394000 3815500 11297 210 11884 48831;48832;48833;48834;48835;48836;48837 40672;40673;40674 40672 3 468400 11878000 737430 RDNYVPEVSALDQEIIEVDPDTK VRGISIKLQEEERERRDNYVPEVSALDQEI SALDQEIIEVDPDTKEMLKLLDFGSLSNLQ R R D T K E 1 1 1 4 0 1 3 0 0 2 1 1 0 0 2 1 1 0 1 3 0 0 23 1 2644.2868 P08708 P08708 81 103 RPS17 40S ribosomal protein S17 yes yes 3 4.8972E-10 96.793 By MS/MS 8 0 1 1 11562000 0 0 11562000 11298 477 11885 48838 40675 40675 1 0 0 1772600 RDPALNSGVSQKPDPAK STTGAKKRAAPKGTKRDPALNSGVSQKPDP PALNSGVSQKPDPAKTKNRRKRKPSTSDDS K R D A K T 2 1 1 2 0 1 0 1 0 0 1 2 0 0 3 2 0 0 0 1 0 0 17 2 1778.9275 P11388 P11388 1443 1459 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 3.7127E-06 141.6 By MS/MS By MS/MS 1.86 0.99 3 3 1 2 5 58594000 0 10081000 48513000 11299 524 11886 48839;48840;48841;48842;48843;48844;48845 40676;40677;40678;40679;40680;40681 40676 6 0 4778300 10447000 RDPTAEQFQEELEK LEHMFRQLRFESTMKRDPTAEQFQEELEKF KRDPTAEQFQEELEKFQQAIDSREDPVSCA K R D E K F 1 1 0 1 0 2 4 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 14 1 1718.8111 P31944 P31944 54 67 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 0.00013425 145.71 By MS/MS 5.67 2.9 1 1 1 2 2 2 2 1 12 69794000 69794000 0 0 11300 723 11887 48846;48847;48848;48849;48850;48851;48852;48853;48854;48855;48856;48857 40682;40683;40684;40685;40686;40687;40688;40689 40687 8 55318000 0 0 RDQALTEEHAR EINGKWDHVRQLVPRRDQALTEEHARQQHN LVPRRDQALTEEHARQQHNERLRKQFGAQA R R D A R Q 2 2 0 1 0 1 2 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 11 1 1324.6484 P12814 P12814 614 624 ACTN1 Alpha-actinin-1 yes yes 3 0.025866 57.802 By MS/MS 2.5 0.5 1 1 2 588970 0 588970 0 11301 540 11888 48858;48859 40690;40691 40690 2 0 263250 0 RDYDDMSPR RMPPGRGGRPMPPSRRDYDDMSPRRGPPPP PMPPSRRDYDDMSPRRGPPPPPPGRGGRGG R R D P R R 0 2 0 3 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 9 1 1153.4822 P61978 P61978 278 286 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 0.00043781 140.16 By MS/MS 4 0 1 1 6411100 0 0 6411100 11302 1002 11889 48860 40692 40692 1 0 0 1047100 RDYLHYIR GVVTKMKMQRTIVIRRDYLHYIRKYNRFEK QRTIVIRRDYLHYIRKYNRFEKRHKNMSVH R R D I R K 0 2 0 1 0 0 0 0 1 1 1 0 0 0 0 0 0 0 2 0 0 0 8 1 1134.5934 P62280 P62280 90 97 RPS11 40S ribosomal protein S11 yes yes 2 0.037802 107 By MS/MS 7.5 0.5 1 1 2 63483000 0 0 63483000 11303 1017 11890 48861;48862 40693 40693 0 0 0 11131000 REDLVVAPAGITLK KEEEHDCFLEEIMTKREDLVVAPAGITLKE KREDLVVAPAGITLKEANEILQRSKKGKLP K R E L K E 2 1 0 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 0 2 0 0 14 1 1480.8613 P12268 P12268 182 195 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 2;3 0.00086189 136.93 By MS/MS 4 0 2 2 14331000 0 14331000 0 11304 535 11891 48863;48864 40694;40695 40695 2 0 4755800 0 REDVWLPLMSYR YVYLEKFMTFQMSLRREDVWLPLMSYRNSL SLRREDVWLPLMSYRNSLLAGGDDDTMSVI R R E Y R N 0 2 0 1 0 0 1 0 0 0 2 0 1 0 1 1 0 1 1 1 0 0 12 1 1563.7868 Q8N3U4 Q8N3U4 1034 1045 STAG2 Cohesin subunit SA-2 yes yes 2;3 6.1325E-25 197.43 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 11954000 0 950090 11003000 11305 1603 11892 48865;48866;48867;48868 40696;40697;40698 40698 3 0 427840 2469300 REEDGHLFSQLLDMLK DSHLLVHCYLSNLVRREEDGHLFSQLLDML EEDGHLFSQLLDMLKFYTGFEINDQTGNAL R R E L K F 0 1 0 2 0 1 2 1 1 0 4 1 1 1 0 1 0 0 0 0 0 0 16 1 1929.9618 O60306 O60306 291 306 AQR Intron-binding protein aquarius yes yes 3 1.1975E-05 108.56 By MS/MS 1.5 0.5 1 1 2 4628100 0 0 4628100 11306 225 11893 48869;48870 40699 40699 1 0 0 1039900 REEEEFNTGPLSVLTQSVK LNKPKSEMTPEELQKREEEEFNTGPLSVLT EFNTGPLSVLTQSVKNNTQVLINCRNNKKL K R E V K N 0 1 1 0 0 1 4 1 0 0 2 1 0 1 1 2 2 0 0 2 0 0 19 1 2162.0855 P62316 P62316 19 37 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2;3 4.2371E-135 278.84 By MS/MS By MS/MS 8.4 0.49 3 2 1 4 79417000 0 5890400 73527000 11307 1023 11894 48871;48872;48873;48874;48875 40700;40701;40702;40703;40704;40705;40706;40707 40702 8 0 2679900 14345000 REEEEQQEGGFASPR LEALANREREKENSKREEEEQQEGGFASPR REEEEQQEGGFASPRTGKGKWKRKSAGGGP K R E P R T 1 2 0 0 0 2 5 2 0 0 0 0 0 1 1 1 0 0 0 0 0 0 15 1 1747.7762 Q96T88 Q96T88 627 641 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 3 0.0022574 73.983 By MS/MS 4 0.816 1 1 1 3 8090000 0 0 8090000 11308 1841 11895 48876;48877;48878 40708;40709 40709 2 0 0 1406100 REEEMMIR KRKEMQLRQEEERRRREEEMMIRQREMEEQ QEEERRRREEEMMIRQREMEEQMRRQREES R R E I R Q 0 2 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 8 1 1092.5056 P23246 P23246 574 581 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.00010308 149.82 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 35838000 0 13915000 21923000 11309 638 11896 48879;48880 40710;40711 40711 2 0 6266100 4252000 REEFVSIK FRQHVTTLRETKASRREEFVSIKRQIILCM RETKASRREEFVSIKRQIILCMEALDHTPD R R E I K R 0 1 0 0 0 0 2 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 8 1 1006.5447 O43663 O43663 171 178 PRC1 Protein regulator of cytokinesis 1 yes yes 2 0.045833 79.474 By MS/MS 3 0 1 1 16803000 0 0 16803000 11310 206 11897 48881 40712 40712 1 0 0 3259000 REELITNWEQIR LQQSHPLSATQIQVKREELITNWEQIRTLA QVKREELITNWEQIRTLAAERHARLNDSYR K R E I R T 0 2 1 0 0 1 3 0 0 2 1 0 0 0 0 0 1 1 0 0 0 0 12 1 1585.8213 Q13813 Q13813 336 347 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 7.7594E-89 255.3 By MS/MS By MS/MS 1.33 0.471 4 2 2 4 55332000 0 9554600 45777000 11311 1268 11898 48882;48883;48884;48885;48886;48887 40713;40714;40715;40716 40716 4 0 4670200 10003000 REELSNVLAAMR FIKKRVGTHIRAKRKREELSNVLAAMRKAA KRKREELSNVLAAMRKAAAKKD________ K R E M R K 2 2 1 0 0 0 2 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 12 1 1387.7242 Q9Y3U8 Q9Y3U8 87 98 RPL36 60S ribosomal protein L36 yes yes 2;3 2.0919E-34 211.84 By MS/MS By MS/MS 8.2 0.4 4 1 2 3 46674000 0 10509000 36165000 11312 2278 11899 48888;48889;48890;48891;48892 40717;40718;40719;40720 40718 4 0 4781300 6762200 REGGDGEEQDVGDAGR EKEESRRKRRERKQRREGGDGEEQDVGDAG EGGDGEEQDVGDAGRLLLRVLHVSENPVPL R R E G R L 1 2 0 3 0 1 3 5 0 0 0 0 0 0 0 0 0 0 0 1 0 0 16 1 1645.6928 Q8N1G4 Q8N1G4 291 306 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 3 0.00043692 88.19 By MS/MS 3 0 1 1 2333800 0 0 2333800 11313 1600 11900 48893 40721 40721 1 0 0 452660 RELNEDKLEK DNATYCRLAQFIGNRRELNEDKLEKLEELT FIGNRRELNEDKLEKLEELTMDGAKAKAIL R R E E K L 0 1 1 1 0 0 3 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 10 2 1272.6674 O00567 O00567 221 230 NOP56 Nucleolar protein 56 yes yes 3 0.011122 75.229 By MS/MS 3 0 1 1 0 0 0 0 11314 130 11901 48894 40722 40722 1 0 0 0 REPAEQPGDGER HAQSSKADSLLAVVKREPAEQPGDGERTDC VVKREPAEQPGDGERTDCEPVGLEPAVEQS K R E E R T 1 2 0 1 0 1 3 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 12 1 1339.6117 Q14151;Q15424 Q15424 295 306 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2 0.00052326 129.89 By MS/MS 2 0 1 1 2207700 0 2207700 0 11315 1364;1285 11902 48895 40723 40723 1 0 994170 0 REPFLLSGGDDGALK ATAHDGDVNVISWSRREPFLLSGGDDGALK REPFLLSGGDDGALKIWDLRQFKSGSPVAT R R E L K I 1 1 0 2 0 0 1 3 0 0 3 1 0 1 1 1 0 0 0 0 0 0 15 1 1573.81 Q9BQ67 Q9BQ67 319 333 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2;3 1.1396E-24 197.19 By MS/MS 4 0 2 2 52727000 0 0 52727000 11316 1878 11903 48896;48897 40724;40725 40724 2 0 0 8612100 REPLSLINVR GARPGPGVWDPNWDRREPLSLINVRKRNVE PNWDRREPLSLINVRKRNVESGEEELASKL R R E V R K 0 2 1 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 0 1 0 0 10 1 1195.7037 Q96HS1 Q96HS1 65 74 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.0010353 133.76 By matching By MS/MS 6 0 2 1 1 39313000 0 3606100 35706000 11317 1796 11904 48898;48899 40726 40726 1 0 1248300 5342100 REPPPYGYR ARSQRSRQTSLVSSRREPPPYGYRKGWIPR SLVSSRREPPPYGYRKGWIPRLLEDFGDGG R R E Y R K 0 2 0 0 0 0 1 1 0 0 0 0 0 0 3 0 0 0 2 0 0 0 9 1 1133.5618 Q13573 Q13573 39 47 SNW1 SNW domain-containing protein 1 yes yes 2 1.2477E-06 116.37 By MS/MS 3 0 1 1 0 0 0 0 11318 1259 11905 48900 40727 40727 1 0 0 0 REPTVSSFYVK WNNAFTLLSAVSLPRREPTVSSFYVKRAEL SLPRREPTVSSFYVKRAELWDTWKVAHLKE R R E V K R 0 1 0 0 0 0 1 0 0 0 0 1 0 1 1 2 1 0 1 2 0 0 11 1 1311.6823 Q9BVI4 Q9BVI4 222 232 NOC4L Nucleolar complex protein 4 homolog yes yes 2;3 0.00057269 123.75 By MS/MS By MS/MS 4 0 2 1 1 23972000 0 18603000 5369200 11319 1914 11906 48901;48902 40728;40729 40728 2 0 6173700 876970 RFALTFGLDQLK DRSSSTFSGIKELARRFALTFGLDQLKTRE LARRFALTFGLDQLKTREAIAMLHKDGIEF R R F L K T 1 1 0 1 0 1 0 1 0 0 3 1 0 2 0 0 1 0 0 0 0 0 12 1 1407.7874 Q8N3U4 Q8N3U4 954 965 STAG2 Cohesin subunit SA-2 yes yes 2;3 0.0008802 125.74 By MS/MS 1.67 0.471 1 2 3 19147000 0 0 19147000 11320 1603 11907 48903;48904;48905 40730;40731 40730 2 0 0 4309900 RFDAMPFTLR LKMKTSRAFFSEVERRFDAMPFTLRAFEDE SEVERRFDAMPFTLRAFEDEKKARMGVVEC R R F L R A 1 2 0 1 0 0 0 0 0 0 1 0 1 2 1 0 1 0 0 0 0 0 10 1 1252.6387 Q9UQ80 Q9UQ80 272 281 PA2G4 Proliferation-associated protein 2G4 yes yes 2;3 3.4172E-05 136.96 By MS/MS By MS/MS 5.44 0.956 1 5 1 2 6 3 138650000 0 51085000 87564000 11321 2220 11908;11909 48906;48907;48908;48909;48910;48911;48912;48913;48914 40732;40733;40734;40735;40736 40733 713 5 0 13559000 12235000 RFDDAVVQSDMK NPTNTVFDAKRLIGRRFDDAVVQSDMKHWP IGRRFDDAVVQSDMKHWPFMVVNDAGRPKV R R F M K H 1 1 0 3 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 12 1 1409.6609 P11142 P11142 77 88 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 3.5842E-45 219.33 By MS/MS By MS/MS 2.73 1.54 2 3 5 1 3 8 298170000 0 50072000 248100000 11322 517 11910;11911 48915;48916;48917;48918;48919;48920;48921;48922;48923;48924;48925 40737;40738;40739;40740;40741;40742;40743;40744;40745 40743 216 9 0 21346000 48814000 RFDSELSQAHEEAQR EGQQVRNHELEKKQRRFDSELSQAHEEAQR RFDSELSQAHEEAQREKLQREKLQREKDML R R F Q R E 2 2 0 1 0 2 3 0 1 0 1 0 0 1 0 2 0 0 0 0 0 0 15 1 1801.8343 Q92614 Q92614 1462 1476 MYO18A Unconventional myosin-XVIIIa yes yes 3 5.2514E-05 120.77 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 15814000 0 6217200 9596600 11323 1710 11912 48926;48927;48928 40746;40747 40746 1 0 3038900 2082300 RFEEALQTIFNR YGKHVKWPSPPKVLRRFEEALQTIFNRWRA VLRRFEEALQTIFNRWRASQLIKSIPASDL R R F N R W 1 2 1 0 0 1 2 0 0 1 1 0 0 2 0 0 1 0 0 0 0 0 12 1 1522.7892 O94832 O94832 771 782 MYO1D Unconventional myosin-Id yes yes 2;3 3.279E-34 208.74 By MS/MS 1.67 0.471 1 2 3 17548000 0 0 17548000 11324 299 11913 48929;48930;48931 40748;40749 40748 2 0 0 3949600 RFEELGVK GHIGIAVPDVYSACKRFEELGVKFVKKPDD DVYSACKRFEELGVKFVKKPDDGKMKGLAF K R F V K F 0 1 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 0 1 0 0 8 1 976.53418 Q04760 Q04760 141 148 GLO1 Lactoylglutathione lyase yes yes 2 0.0024598 116.25 By matching By MS/MS 7 0 2 1 1 17218000 0 2931200 14287000 11325 1160 11914 48932;48933 40750 40750 1 0 1683100 2535100 RFEFLLK MDPEYEEKMKADRAKRFEFLLKQTELFAHF KMKADRAKRFEFLLKQTELFAHFIQPSAQK K R F L K Q 0 1 0 0 0 0 1 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 7 1 951.55419 P28370 P28370 94 100 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.073674 81.297 By MS/MS 1.5 0.5 1 1 2 14804000 0 0 14804000 11326 693 11915 48934;48935 40751 40751 1 0 0 3318400 RFELYFQGPSSNKPR MVRSPQNQYPAELMRRFELYFQGPSSNKPR RFELYFQGPSSNKPRVIREVRADSVGKLVT R R F P R V 0 2 1 0 0 1 1 1 0 0 1 1 0 2 2 2 0 0 1 0 0 0 15 2 1824.9271 P33993 P33993 133 147 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.0032746 75.998 By MS/MS 3 0 1 1 9789400 0 9789400 0 11327 733 11916 48936 40752 40752 1 0 4173200 0 RFFMGNQVLK CFSVLGFCKSSQVQRRFFMGNQVLKVFAAR SQVQRRFFMGNQVLKVFAARDDEAAAVALS R R F L K V 0 1 1 0 0 1 0 1 0 0 1 1 1 2 0 0 0 0 0 1 0 0 10 1 1238.6594 P13010 P13010 354 363 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.00049881 139.97 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 54911000 0 17672000 37240000 11328 542 11917 48937;48938;48939 40753;40754 40753 2 0 7533500 7469200 RFGFPEGSVELYAEK EKGRRIRELTAVVQKRFGFPEGSVELYAEK RFGFPEGSVELYAEKVATRGLCAIAQAESL K R F E K V 1 1 0 0 0 0 3 2 0 0 1 1 0 2 1 1 0 0 1 1 0 0 15 1 1727.8519 P23396 P23396 76 90 RPS3 40S ribosomal protein S3 yes yes 2 0.048391 63.185 By MS/MS 6 0 1 1 9897700 0 0 9897700 11329 641 11918 48940 40755 40755 0 0 0 1480800 RFGSEFSPELQASFQK NFRLLGNVLVVVLARRFGSEFSPELQASFQ FGSEFSPELQASFQKVVTGVANALAHRYH_ R R F Q K V 1 1 0 0 0 2 2 1 0 0 1 1 0 3 1 3 0 0 0 0 0 0 16 1 1856.9057 CON__Q3SX09 CON__Q3SX09 172 187 yes yes 2;3 4.1002E-91 258.78 By MS/MS By MS/MS By MS/MS 7.65 2.03 1 1 3 2 2 5 3 4 3 10 672060000 97697000 10020000 564340000 + 11330 82 11919 48941;48942;48943;48944;48945;48946;48947;48948;48949;48950;48951;48952;48953;48954;48955;48956;48957 40756;40757;40758;40759;40760;40761;40762;40763;40764;40765;40766;40767;40768;40769;40770;40771;40772 40767 17 79968000 35027000 167720000 RFGVPVIADGGIQNVGHIAK RPQATAVYKVSEYARRFGVPVIADGGIQNV VIADGGIQNVGHIAKALALGASTVMMGSLL R R F A K A 2 1 1 1 0 1 0 4 1 3 0 1 0 1 1 0 0 0 0 3 0 0 20 1 2047.1327 P12268 P12268 356 375 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 3 0.020297 49.34 By MS/MS 4 0 1 1 9257600 0 9257600 0 11331 535 11920 48958 40773 40773 0 0 3072300 0 RFMQTFVLAPEGSVANK VQVMGLLSNNNQALRRFMQTFVLAPEGSVA MQTFVLAPEGSVANKFYVHNDIFRYQDEVF R R F N K F 2 1 1 0 0 1 1 1 0 0 1 1 1 2 1 1 1 0 0 2 0 0 17 1 1893.9771 Q13283 Q13283 107 123 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3 0.0080392 54.292 By MS/MS By MS/MS 4 0 2 1 1 14998000 0 9349900 5647900 11332 1236 11921 48959;48960 40774;40775 40774 2 0 3102900 922490 RFPELESLVPNALDYIR ELNIIHKFIRDKYSKRFPELESLVPNALDY PELESLVPNALDYIRTVKELGNSLDKCKNN K R F I R T 1 2 1 1 0 0 2 0 0 1 3 0 0 1 2 1 0 0 1 1 0 0 17 1 2031.0789 Q8WWY3 Q8WWY3 121 137 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 3 0.00010853 96.096 By matching By MS/MS 3 0.816 1 1 1 1 2 12589000 0 2192700 10397000 11333 1691 11922 48961;48962;48963 40776;40777 40777 2 0 987420 1777600 RFPGYDSESK KGAVDGGLSIPHSTKRFPGYDSESKEFNAE PHSTKRFPGYDSESKEFNAEVHRKHIMGQN K R F S K E 0 1 0 1 0 0 1 1 0 0 0 1 0 1 1 2 0 0 1 0 0 0 10 1 1184.5462 P46777 P46777 179 188 RPL5 60S ribosomal protein L5 yes yes 2 8.4406E-50 226.39 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 85524000 0 20147000 65377000 11334 828 11923 48964;48965;48966;48967 40778;40779;40780;40781;40782 40781 5 0 6974200 9723600 RFPPYYMR APEGQAQQRRPYRRRRFPPYYMRRPYGRRP RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ R R F M R R 0 2 0 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 0 8 1 1128.5539 P67809 P67809 192 199 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 2 4.8268E-33 163.34 By matching By MS/MS By MS/MS 4.67 0.667 1 1 7 2 6 1 101070000 58444000 33469000 9159400 11335 1072 11924 48968;48969;48970;48971;48972;48973;48974;48975;48976 40783;40784;40785;40786;40787;40788;40789 40788 7 64173000 8627200 1277600 RFPVAPLIPYPLITK HPRKKKKEKKEDIFRRFPVAPLIPYPLITK RFPVAPLIPYPLITKEDINAIEMEEDKRDL R R F T K E 1 1 0 0 0 0 0 0 0 2 2 1 0 1 4 0 1 0 1 1 0 0 15 1 1724.0389 P49756 P49756 247 261 RBM25 RNA-binding protein 25 yes yes 3 0.0116 56.46 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 36931000 0 12810000 24121000 11336 866 11925 48977;48978;48979;48980;48981 40790;40791;40792;40793 40792 4 0 5713100 5276900 RFQFLQK GYRSRSAFKLIQLNRRFQFLQKARALLDLC FKLIQLNRRFQFLQKARALLDLCAAPGGWL R R F Q K A 0 1 0 0 0 2 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 7 1 965.54469 Q8IY81 Q8IY81 38 44 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.034274 103.28 By MS/MS 2 0 1 1 9707400 0 9707400 0 11337 1590 11926 48982 40794 40794 1 0 4371400 0 RFQILGK HPDRVGEGDKEDATRRFQILGKVYSVLSDR GDKEDATRRFQILGKVYSVLSDREQRAVYD R R F G K V 0 1 0 0 0 1 0 1 0 1 1 1 0 1 0 0 0 0 0 0 0 0 7 1 860.52322 Q8WXX5 Q8WXX5 58 64 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.05238 78.994 By MS/MS By MS/MS 6 0 2 1 1 29736000 0 3720000 26016000 11338 1698 11927 48983;48984 40795;40796 40796 0 0 1287700 3892300 RFVEVGR ______________________________ ______________________________ R R F G R V 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 2 0 0 7 1 861.48209 P50914 P50914 5 11 RPL14 60S ribosomal protein L14 yes yes 2 0.00088908 152.34 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 43771000 0 15429000 28342000 11339 884 11928 48985;48986;48987;48988 40797;40798;40799;40800 40798 4 0 7891200 4836800 RFVNVVPTFGK KKKTGRAKRRMQYNRRFVNVVPTFGKKKGP QYNRRFVNVVPTFGKKKGPNANS_______ R R F G K K 0 1 1 0 0 0 0 1 0 0 0 1 0 2 1 0 1 0 0 3 0 0 11 1 1262.7135 P62861 P62861 41 51 FAU 40S ribosomal protein S30 yes yes 2;3 0.0010058 118.71 By MS/MS By MS/MS 8.88 0.927 1 1 4 2 6 2 123240000 0 83184000 40055000 11340 1042 11929 48989;48990;48991;48992;48993;48994;48995;48996 40801;40802;40803;40804;40805;40806;40807 40806 7 0 246180000 12795000 RFYPHTHNMDGFFIAK RFRERRFHPSLRSTRRFYPHTHNMDGFFIA FYPHTHNMDGFFIAKFKKFSNSIPQSQTGN R R F A K F 1 1 1 1 0 0 0 1 2 1 0 1 1 3 1 0 1 0 1 0 0 0 16 1 1979.9465 P46087 P46087 568 583 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 4 0.00079934 81.448 By MS/MS 2 0 1 1 12520000 0 0 12520000 11341 824 11930 48997 40808 40808 1 0 0 2829300 RGAPAAATAPAPTAHK SFKLNRKKLEGGGERRGAPAAATAPAPTAH GAPAAATAPAPTAHKAKKAAPGAAGSRRAD R R G H K A 7 1 0 0 0 0 0 1 1 0 0 1 0 0 3 0 2 0 0 0 0 0 16 1 1486.8005 Q92522 Q92522 128 143 H1FX Histone H1x yes yes 3 0.026614 44.045 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 8713800 0 4945200 3768600 11342 1706 11931 48998;48999;49000;49001 40809;40810;40811 40809 3 0 1968400 622940 RGAPPSSNIEDFHGLLPK RGPGPLQERSLFEKKRGAPPSSNIEDFHGL PPSSNIEDFHGLLPKGYPHLCSICDLPVHS K R G P K G 1 1 1 1 0 0 1 2 1 1 2 1 0 1 3 2 0 0 0 0 0 0 18 1 1934.001 P43243 P43243 270 287 MATR3 Matrin-3 yes yes 3 0.061799 40.614 By MS/MS 1.5 0.5 1 1 2 7768200 0 0 7768200 11343 812 11932 49002;49003 40812 40812 0 0 0 1734500 RGDFFYHSENPK LSLSKLEDPHVDIIRRGDFFYHSENPKYPE IIRRGDFFYHSENPKYPEVGDLRVSFSYAG R R G P K Y 0 1 1 1 0 0 1 1 1 0 0 1 0 2 1 1 0 0 1 0 0 0 12 1 1495.6844 Q9BTV4 Q9BTV4 221 232 TMEM43 Transmembrane protein 43 yes yes 3 0.010384 70.563 By matching By MS/MS 5 0.816 1 1 1 1 2 21230000 0 4342300 16888000 11344 1902 11933 49004;49005;49006 40813;40814 40813 1 0 1441000 2413000 RGDLPFVVPR DAMNREVSSLKNKLRRGDLPFVVPRRMARK KNKLRRGDLPFVVPRRMARKGAGDGSDEEV R R G P R R 0 2 0 1 0 0 0 1 0 0 1 0 0 1 2 0 0 0 0 2 0 0 10 1 1154.656 P35579 P35579 1923 1932 MYH9 Myosin-9 yes yes 2 2.7298E-16 180.67 By MS/MS By MS/MS 1.75 0.829 2 1 1 3 1 147010000 0 100520000 46493000 11345 752 11934 49007;49008;49009;49010 40815;40816;40817;40818 40815 4 0 48703000 10018000 RGEEGHDPKEPEQLR PPGRPQPDSGRRRRRRGEEGHDPKEPEQLR RGEEGHDPKEPEQLRKLFIGGLSFETTDDS R R G L R K 0 2 0 1 0 1 4 2 1 0 1 1 0 0 2 0 0 0 0 0 0 0 15 2 1775.8551 P51991 P51991 21 35 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 3;4 6.9679E-05 128.71 By MS/MS By MS/MS 4.22 1.81 1 1 1 1 3 1 1 1 8 251580000 0 19630000 231950000 11346 900 11935 49011;49012;49013;49014;49015;49016;49017;49018;49019 40819;40820;40821;40822;40823;40824;40825 40819 7 0 5060100 33309000 RGEGEDEVEEESTALQK TAKVAEIRDQKADKKRGEGEDEVEEESTAL EGEDEVEEESTALQKTDKKEILKKSEKDTN K R G Q K T 1 1 0 1 0 1 6 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 17 1 1904.8599 Q96T23 Q96T23 800 816 RSF1 Remodeling and spacing factor 1 yes yes 2;3 1.5268E-60 229.17 By MS/MS 1.5 0.5 2 2 4 46511000 0 0 46511000 11347 1837 11936 49020;49021;49022;49023 40826;40827;40828 40827 3 0 0 10169000 RGEHVALANWQNHASLR FVSNELDDPDDLQCKRGEHVALANWQNHAS EHVALANWQNHASLRLLNLVYDVTPPELVD K R G L R L 3 2 2 0 0 1 1 1 2 0 2 0 0 0 0 1 0 1 0 1 0 0 17 1 1957.9983 Q9UI10 Q9UI10 467 483 EIF2B4 Translation initiation factor eIF-2B subunit delta yes yes 4 0.00049535 81.723 By MS/MS 4 0 1 1 5566000 0 5566000 0 11348 2160 11937 49024 40829 40829 1 0 1847100 0 RGFAFVTFDDHDSVDK IEVIEIMTDRGSGKKRGFAFVTFDDHDSVD GFAFVTFDDHDSVDKIVIQKYHTVNGHNCE K R G D K I 1 1 0 4 0 0 0 1 1 0 0 1 0 3 0 1 1 0 0 2 0 0 16 1 1854.8537 P09651;Q32P51 P09651 146 161 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 3.0458E-12 176.99 By MS/MS 5.5 0.5 1 1 2 30406000 0 0 30406000 11349 490 11938 49025;49026 40830;40831 40831 2 0 0 4376300 RGFAFVTFDDHDSVDKIVIQK IEVIEIMTDRGSGKKRGFAFVTFDDHDSVD TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL K R G Q K Y 1 1 0 4 0 1 0 1 1 2 0 2 0 3 0 1 1 0 0 3 0 0 21 2 2436.2438 P09651;Q32P51 P09651 146 166 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 4 4.5629E-06 87.326 By MS/MS 6 0 1 1 8054100 0 8054100 0 11350 490 11939 49027 40832 40832 1 0 2788000 0 RGFCFITYTDEEPVKK IENIELPMDTKTNERRGFCFITYTDEEPVK GFCFITYTDEEPVKKLLESRYHQIGSGKCE R R G K K L 0 1 0 1 1 0 2 1 0 1 0 2 0 2 1 0 2 0 1 1 0 0 16 2 1988.9666 O14979 O14979 274 289 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 3 0.0021175 65.716 By MS/MS 5 0 1 1 0 0 0 0 11351 157 11940 49028 40833 40833 1 0 0 0 RGFGFVTFDDHDPVDK IDTIEIITDRQSGKKRGFGFVTFDDHDPVD GFGFVTFDDHDPVDKIVLQKYHTINGHNAE K R G D K I 0 1 0 4 0 0 0 2 1 0 0 1 0 3 1 0 1 0 0 2 0 0 16 1 1850.8588 P22626 P22626 153 168 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 7.6304E-26 198.57 By MS/MS By MS/MS 5.5 0.5 3 3 2 4 112030000 0 20198000 91832000 11352 632 11941 49029;49030;49031;49032;49033;49034 40834;40835;40836;40837;40838;40839 40839 6 0 6742500 13224000 RGFGFVTFDDHDPVDKIVLQK IDTIEIITDRQSGKKRGFGFVTFDDHDPVD TFDDHDPVDKIVLQKYHTINGHNAEVRKAL K R G Q K Y 0 1 0 4 0 1 0 2 1 1 1 2 0 3 1 0 1 0 0 3 0 0 21 2 2432.2488 P22626 P22626 153 173 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 4 0.0026978 56.081 By MS/MS 6 0 1 1 12085000 0 12085000 0 11353 632 11942 49035 40840 40840 1 0 4183400 0 RGFGFVYFQNHDAADK VEKAEIIADKQSGKKRGFGFVYFQNHDAAD GFGFVYFQNHDAADKAAVVKFHPIQGHRVE K R G D K A 2 1 1 2 0 1 0 2 1 0 0 1 0 3 0 0 0 0 1 1 0 0 16 1 1870.8751 Q13151 Q13151 139 154 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 3 0.00096685 79.346 By matching By MS/MS 6 0 2 1 1 12914000 0 1961600 10952000 11354 1225 11943 49036;49037 40841 40841 1 0 679050 1638500 RGFSANSARLPGVSR MASTSTTIRSHSSSRRGFSANSARLPGVSR RGFSANSARLPGVSRSGFSSISVSRSRGSG R R G S R S 2 3 1 0 0 0 0 2 0 0 1 0 0 1 1 3 0 0 0 1 0 0 15 2 1573.8437 P02538;CON__P02538;CON__P48668;P48668 CON__P48668 16 30 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 3 0.018155 57.52 By MS/MS 9.5 0.5 1 1 2 7656300 7656300 0 0 + 11355 68;37 11944 49038;49039 40842 40842 1 8744400 0 0 RGFVFITFK IEAIELPMDPKLNKRRGFVFITFKEEEPVK PKLNKRRGFVFITFKEEEPVKKVLEKKFHT R R G F K E 0 1 0 0 0 0 0 1 0 1 0 1 0 3 0 0 1 0 0 1 0 0 9 1 1113.6335 Q99729 Q99729 195 203 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B yes yes 2 0.028768 84.568 By MS/MS 5 0 1 1 6778600 0 0 6778600 11356 1861 11945 49040 40843 40843 1 0 0 945500 RGGPISFSSSR EGLSREVSTLKNRLRRGGPISFSSSRSGRR NRLRRGGPISFSSSRSGRRQLHLEGASLEL R R G S R S 0 2 0 0 0 0 0 2 0 1 0 0 0 1 1 4 0 0 0 0 0 0 11 1 1149.5891 P35580 P35580 1930 1940 MYH10 Myosin-10 yes yes 2 0.0036814 108.7 By MS/MS By MS/MS 1 0 2 1 1 17663000 0 7592600 10070000 11357 753 11946 49041;49042 40844;40845 40844 2 0 3711200 2169700 RGGPPFAFVEFEDPR FYKYGAIRDIDLKNRRGGPPFAFVEFEDPR RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD R R G P R D 1 2 0 1 0 0 2 2 0 0 0 0 0 3 3 0 0 0 0 1 0 0 15 1 1719.8369 Q07955 Q07955 51 65 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 3 0.0033017 69.045 By MS/MS 6 0 1 1 6318600 0 0 6318600 11358 1179 11947 49043 40846 40846 1 0 0 945330 RGHVTQDAPIPGSPLYTIK PADCVSAVYTVLARRRGHVTQDAPIPGSPL TQDAPIPGSPLYTIKAFIPAIDSFGFETDL R R G I K A 1 1 0 1 0 1 0 2 1 2 1 1 0 0 3 1 2 0 1 1 0 0 19 1 2049.1007 Q15029 Q15029 854 872 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 3;4 0.00055822 69.122 By MS/MS 2 0 2 2 13794000 0 0 13794000 11359 1335 11948 49044;49045 40847;40848 40848 2 0 0 3117300 RGIEKPPFELPDFIK VPRHWCFKRKYLQGKRGIEKPPFELPDFIK RGIEKPPFELPDFIKRTGIQEMREALQEKE K R G I K R 0 1 0 1 0 0 2 1 0 2 1 2 0 2 3 0 0 0 0 0 0 0 15 2 1784.9825 Q13435 Q13435 515 529 SF3B2 Splicing factor 3B subunit 2 yes yes 3 0.00065594 90.348 By MS/MS 2 0 1 1 5039400 0 0 5039400 11360 1248 11949 49046 40849 40849 1 0 0 1138800 RGILTLK MGQKDSYVGDEAQSKRGILTLKYPIEHGIV VGDEAQSKRGILTLKYPIEHGIVTNWDDME K R G L K Y 0 1 0 0 0 0 0 1 0 1 2 1 0 0 0 0 1 0 0 0 0 0 7 1 799.52797 P60709;A5A3E0;P63261;P0CG38;P0CG39;P68032;P63267;P68133;P62736;Q6S8J3 P60709 62 68 ACTB;POTEF;ACTG1;POTEI;POTEJ;ACTC1;ACTG2;ACTA1;ACTA2;POTEE Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member I;POTE ankyrin domain family member J;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E no no 2 0.031194 106.43 By matching By MS/MS By MS/MS 4.5 1.71 1 1 2 2 1 3 2 986040000 1851300 530630000 453560000 11361 966;1069;1075;1501;499 11950 49047;49048;49049;49050;49051;49052 40850;40851;40852 40850 3 1851300 146090000 63460000 RGPCIIYNEDNGIIK RAGKGKMRNRRRIQRRGPCIIYNEDNGIIK RGPCIIYNEDNGIIKAFRNIPGITLLNVSK R R G I K A 0 1 2 1 1 0 1 2 0 4 0 1 0 0 1 0 0 0 1 0 0 0 15 1 1760.888 P36578 P36578 205 219 RPL4 60S ribosomal protein L4 yes yes 2;3 6.246E-25 201.46 By matching By MS/MS 4.67 0.471 1 2 1 2 33363000 0 4644000 28719000 11362 762 11951 49053;49054;49055 40853;40854 40853 2 0 1541200 4005800 RGPNYTSGYGTNSELSNPSETESER RQIGSRSYSGRGRGRRGPNYTSGYGTNSEL TNSELSNPSETESERKDELSDWSLAGEDDR R R G E R K 0 2 3 0 0 0 4 3 0 0 1 0 0 0 2 5 3 0 2 0 0 0 25 1 2731.1958 P51114 P51114 391 415 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 3 6.9892E-74 219.23 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 17471000 0 4494300 12976000 11363 887 11952 49056;49057;49058 40855;40856 40855 2 0 1915900 2343700 RGVFLPYQCNLSHTK EHNILTRCSLHLGNRRGVFLPYQCNLSHTK RGVFLPYQCNLSHTKILLEPESMSKVNLNG R R G T K I 0 1 1 0 1 1 0 1 1 0 2 1 0 1 1 1 1 0 1 1 0 0 15 1 1818.9199 P03243;P03244 P03243 401 415 yes no 3 0.0017629 76.322 By MS/MS By MS/MS 3 1.58 1 1 1 1 2 2 26416000 0 6927600 19489000 11364 406 11953 49059;49060;49061;49062 40857;40858 40858 2 0 2012800 4239200 RGVFNVQMEPK LSQAMAVIKEKIEEKRGVFNVQMEPKVVTD IEEKRGVFNVQMEPKVVTDTDETELARQME K R G P K V 0 1 1 0 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 2 0 0 11 1 1303.6707 P05198 P05198 266 276 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 2.7529E-05 111.61 By MS/MS By MS/MS 6 0 2 1 1 13226000 0 13226000 0 11365 428 11954 49063;49064 40859;40860 40860 2 0 4578300 0 RGVLANALAGR KTPEITVSIIKELNRRGVLANALAGRDEKE ELNRRGVLANALAGRDEKEISHVLNFLIRN R R G G R D 3 2 1 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 1 1096.6465 Q8TED0 Q8TED0 403 413 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.0091103 100.76 By MS/MS 4 0 1 1 2676100 0 2676100 0 11366 1665 11955 49065 40861 40861 1 0 888100 0 RGVVGPELYGR DPHSPESLSVDEAVRRGVVGPELYGRLKRA EAVRRGVVGPELYGRLKRAEGAIAGFRDPF R R G G R L 0 2 0 0 0 0 1 3 0 0 1 0 0 0 1 0 0 0 1 2 0 0 11 1 1201.6568 P58107 P58107 990 1000 EPPK1 Epiplakin yes yes 3 0.035436 52.693 By MS/MS 1 0 1 1 2330600 0 2330600 0 11367 958 11956 49066 40862 40862 1 0 1139200 0 RHEILQWVLQTDSQQ TSVNTIYDNAVQGLRRHEILQWVLQTDSQQ RHEILQWVLQTDSQQ_______________ R R H Q Q - 0 1 0 1 0 4 1 0 1 1 2 0 0 0 0 1 1 1 0 1 0 0 15 1 1879.9541 Q96AG4 Q96AG4 293 307 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 3.0023E-05 162.22 By MS/MS 6.5 0.5 1 1 2 12678000 0 0 12678000 11368 1751 11957 49067;49068 40863 40863 1 0 0 1940800 RHEMPPHIYAITDTAYR PIYSEEIVEMYKGKKRHEMPPHIYAITDTA EMPPHIYAITDTAYRSMMQDREDQSILCTG K R H Y R S 2 2 0 1 0 0 1 0 2 2 0 0 1 0 2 0 2 0 2 0 0 0 17 1 2070.0105 P35579 P35579 143 159 MYH9 Myosin-9 yes yes 4 0.00030274 88.133 By MS/MS 1.33 0.471 2 1 3 18801000 0 18801000 0 11369 752 11958;11959 49069;49070;49071 40864;40865 40865 348 2 0 9129100 0 RHPDYSVVLLLR AKDVFLGMFLYEYARRHPDYSVVLLLRLAK YARRHPDYSVVLLLRLAKTYETTLEKCCAA R R H L R L 0 2 0 1 0 0 0 0 1 0 3 0 0 0 1 1 0 0 1 2 0 0 12 1 1466.8358 CON__P02768-1;P02768 CON__P02768-1 361 372 ALB Serum albumin yes no 2;3 4.0728E-45 218.15 By MS/MS 6 2.96 1 1 1 2 1 1 1 1 2 2 13 1457800000 1457800000 0 0 + 11370 44 11960 49072;49073;49074;49075;49076;49077;49078;49079;49080;49081;49082;49083;49084 40866;40867;40868;40869;40870;40871;40872;40873;40874;40875;40876;40877;40878;40879 40876 14 1178500000 0 0 RHPEYAVSVLLR AKDAFLGSFLYEYSRRHPEYAVSVLLRLAK YSRRHPEYAVSVLLRLAKEYEATLEECCAK R R H L R L 1 2 0 0 0 0 1 0 1 0 2 0 0 0 1 1 0 0 1 2 0 0 12 1 1438.8045 CON__P02769 CON__P02769 360 371 yes yes 2;3 9.2121E-37 166.71 By MS/MS By MS/MS By MS/MS 5.71 2.68 2 3 5 2 4 4 4 5 3 3 13 9 13 1482000000 803980000 278290000 399680000 + 11371 45 11961 49085;49086;49087;49088;49089;49090;49091;49092;49093;49094;49095;49096;49097;49098;49099;49100;49101;49102;49103;49104;49105;49106;49107;49108;49109;49110;49111;49112;49113;49114;49115;49116;49117;49118;49119 40880;40881;40882;40883;40884;40885;40886;40887;40888;40889;40890;40891;40892;40893;40894;40895;40896;40897;40898;40899;40900;40901;40902;40903;40904;40905;40906;40907;40908;40909;40910;40911;40912;40913;40914;40915;40916 40886 35 869800000 203330000 76972000 RHPYFYAPELLFFAK NEETFLKKYLYEIARRHPYFYAPELLFFAK RHPYFYAPELLFFAKRYKAAFTECCQAADK R R H A K R 2 1 0 0 0 0 1 0 1 0 2 1 0 3 2 0 0 0 2 0 0 0 15 1 1897.9879 CON__P02768-1;P02768 CON__P02768-1 169 183 ALB Serum albumin yes no 3;4 0.00015458 98.676 By MS/MS 7.57 2.06 1 1 2 2 1 7 183160000 183160000 0 0 + 11372 44 11962 49120;49121;49122;49123;49124;49125;49126 40917;40918;40919;40920;40921;40922;40923 40917 7 113950000 0 0 RHPYFYAPELLYYANK DEKKFWGKYLYEIARRHPYFYAPELLYYAN HPYFYAPELLYYANKYNGVFQECCQAEDKG R R H N K Y 2 1 1 0 0 0 1 0 1 0 2 1 0 1 2 0 0 0 4 0 0 0 16 1 2044.0207 CON__P02769 CON__P02769 168 183 yes yes 2;3;4 2.1865E-26 204.32 By MS/MS By MS/MS By MS/MS 4.29 2.28 2 4 7 5 3 1 2 2 2 12 6 10 452190000 244750000 62171000 145270000 + 11373 45 11963 49127;49128;49129;49130;49131;49132;49133;49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144;49145;49146;49147;49148;49149;49150;49151;49152;49153;49154 40924;40925;40926;40927;40928;40929;40930;40931;40932;40933;40934;40935;40936;40937;40938;40939;40940;40941;40942;40943;40944;40945;40946;40947;40948;40949 40928 22 215880000 22920000 27766000 RHQMELNTLK ALRAEFEKGREEQERRHQMELNTLKQQLEL EEQERRHQMELNTLKQQLELERQAWEAGRT R R H L K Q 0 1 1 0 0 1 1 0 1 0 2 1 1 0 0 0 1 0 0 0 0 0 10 1 1268.6659 Q9UPN4 Q9UPN4 850 859 CEP131 Centrosomal protein of 131 kDa yes yes 3 0.0622 40.714 By MS/MS 1.5 0.5 1 1 2 6496000 0 0 6496000 11374 2215 11964 49155;49156 40950 40950 1 0 0 1451800 RHVFGESDELIGQK KDCGATWVVLGHSERRHVFGESDELIGQKV RRHVFGESDELIGQKVAHALAEGLGVIACI R R H Q K V 0 1 0 1 0 1 2 2 1 1 1 1 0 1 0 1 0 0 0 1 0 0 14 1 1613.8162 P60174 P60174 137 150 TPI1 Triosephosphate isomerase yes yes 3 0.00064107 93.228 By MS/MS 7 0 1 1 10456000 0 0 10456000 11375 962 11965 49157 40951 40951 1 0 0 1855300 RIALTDNALIAR NELIYKRGYGKINKKRIALTDNALIARSLG NKKRIALTDNALIARSLGKYGIICMEDLIH K R I A R S 3 2 1 1 0 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 12 1 1325.7779 P18124 P18124 166 177 RPL7 60S ribosomal protein L7 yes yes 3 0.00012944 121.02 By MS/MS By matching 6 0 2 1 1 6384800 0 3907500 2477300 11376 594 11966 49158;49159 40952 40952 1 0 1352600 370630 RIEFAEQINK IEESQRKMNALFEGRRIEFAEQINKMEARP LFEGRRIEFAEQINKMEARPRRQSMKEKEH R R I N K M 1 1 1 0 0 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 0 0 10 1 1246.667 Q9H307 Q9H307 271 280 PNN Pinin yes yes 2 0.00021364 144.9 By MS/MS 2 0 1 1 37344000 0 37344000 0 11377 1978 11967 49160 40953 40953 1 0 16817000 0 RIELLEEVKR KDFSRYGRVNYVLARRIELLEEVKRLQKSL YVLARRIELLEEVKRLQKSLGVPGDASYTC R R I K R L 0 2 0 0 0 0 3 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 10 2 1283.7561 O60306 O60306 905 914 AQR Intron-binding protein aquarius yes yes 3 0.0020525 94.465 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 22536000 0 7828900 14707000 11378 225 11968 49161;49162;49163 40954;40955 40955 2 0 3563600 3323500 RIEYIEAR SRLATLNEKLTALERRIEYIEARVTKGETL KLTALERRIEYIEARVTKGETLT_______ R R I A R V 1 2 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 8 1 1048.5665 Q8WUW1 Q8WUW1 60 67 BRK1 Protein BRICK1 yes yes 2 0.002839 113.26 By MS/MS 10 0 1 1 4651700 0 4651700 0 11379 1679 11969 49164 40956 40956 1 0 23534000 0 RILELDQFK KNIYVLQELDNPGAKRILELDQFKGQQGQK DNPGAKRILELDQFKGQQGQKRFQDMMGHG K R I F K G 0 1 0 1 0 1 1 0 0 1 2 1 0 1 0 0 0 0 0 0 0 0 9 1 1160.6554 P12956 P12956 115 123 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.00078631 123.5 By MS/MS By MS/MS 3 0 2 1 1 24430000 0 6618100 17812000 11380 541 11970 49165;49166 40957;40958 40958 2 0 2821300 3454700 RILELSGSSSEDSEK SEPACLAEIEEDKARRILELSGSSSEDSEK RILELSGSSSEDSEKVIAGLYQRAFQHLSE R R I E K V 0 1 0 1 0 0 3 1 0 1 2 1 0 0 0 5 0 0 0 0 0 0 15 1 1635.7952 P78527 P78527 3358 3372 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 0.027435 46.873 By MS/MS 1 0 1 1 6804700 0 0 6804700 11381 1089 11971 49167 40959 40959 1 0 0 1466200 RILTITEDGQGLK GMNVVQVAELYPELRRILTITEDGQGLKGV LRRILTITEDGQGLKGVKRERGACEATEEA R R I L K G 0 1 0 1 0 1 1 2 0 2 2 1 0 0 0 0 2 0 0 0 0 0 13 1 1442.8093 P03243 P03243 89 101 yes yes 2;3 1.8178E-88 256.71 By MS/MS By MS/MS 3.32 1.75 4 3 3 4 3 1 1 8 11 250090000 0 50766000 199330000 11382 406 11972 49168;49169;49170;49171;49172;49173;49174;49175;49176;49177;49178;49179;49180;49181;49182;49183;49184;49185;49186 40960;40961;40962;40963;40964;40965;40966;40967;40968;40969;40970;40971 40966 12 0 17132000 37734000 RILVATNLFGR EERLSRYQQFKDFQRRILVATNLFGRGMDI DFQRRILVATNLFGRGMDIERVNIAFNYDM R R I G R G 1 2 1 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 1 0 0 11 1 1258.751 Q13838;O00148 Q13838 339 349 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A yes no 2 0.014571 94.465 By MS/MS 5 0 1 1 9322500 0 0 9322500 11383 1271 11973 49187 40972 40972 1 0 0 1300300 RINVELSTK KAAIAQLNGKEVKGKRINVELSTKGQKKGP KEVKGKRINVELSTKGQKKGPGLAVQSGDK K R I T K G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 1 0 0 1 0 0 9 1 1058.6084 Q96PK6 Q96PK6 141 149 RBM14 RNA-binding protein 14 yes yes 2 0.0030068 107 By MS/MS By MS/MS 5.25 1.48 1 1 1 1 1 3 57247000 0 1362400 55884000 11384 1818 11974 49188;49189;49190;49191 40973;40974;40975 40975 3 0 351190 10481000 RIQEEMEKER LQKKKQQEEEAERLRRIQEEMEKERKRREE AERLRRIQEEMEKERKRREEDEKRRRKEEE R R I E R K 0 2 0 0 0 1 4 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 10 2 1346.6612 Q9UM54 Q9UM54 928 937 MYO6 Unconventional myosin-VI yes yes 3 0.017065 71.555 By MS/MS 2 0 1 1 2130000 0 2130000 0 11385 2198 11975 49192 40976 40976 1 0 959160 0 RIQLVEEELDRAQER KKATDAEADVASLNRRIQLVEEELDRAQER RIQLVEEELDRAQERLATALQKLEEAEKAA R R I E R L 1 3 0 1 0 2 4 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 15 2 1882.9861 P06753;P09493;CON__Q3SX28;P07951;P67936 P09493 91 105 TPM3;TPM1;TPM2;TPM4 Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin beta chain;Tropomyosin alpha-4 chain no no 3 0.00015117 140.81 By MS/MS 6 0 1 1 10631000 0 10631000 0 + 11386 485;450;1074 11976 49193 40977 40977 1 0 3680100 0 RISAVSVAER NDRAAECNIVVTQPRRISAVSVAERVAFER VTQPRRISAVSVAERVAFERGEEPGKSCGY R R I E R V 2 2 0 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 10 1 1086.6146 Q08211 Q08211 447 456 DHX9 ATP-dependent RNA helicase A yes yes 2 6.2915E-22 187.16 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 90321000 0 33987000 56335000 11387 1182 11977 49194;49195;49196;49197 40978;40979;40980;40981 40978 4 0 15305000 12035000 RISEQFTAMFR ATFIGNSTAIQELFKRISEQFTAMFRRKAF ELFKRISEQFTAMFRRKAFLHWYTGEGMDE K R I F R R 1 2 0 0 0 1 1 0 0 1 0 0 1 2 0 1 1 0 0 0 0 0 11 1 1384.6922 P07437;P68371;Q13885;Q9BVA1;P04350;Q13509 P68371 380 390 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB3 Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-3 chain no no 2;3 1.1554E-46 224.13 By MS/MS By MS/MS 4.27 1.05 1 1 4 4 1 5 6 185030000 0 83818000 101210000 11388 1079;462;1274;414;1254 11978 49198;49199;49200;49201;49202;49203;49204;49205;49206;49207;49208 40982;40983;40984;40985;40986;40987;40988;40989;40990 40986 9 0 23526000 15047000 RISGLIYEETR TKPAIRRLARRGGVKRISGLIYEETRGVLK GGVKRISGLIYEETRGVLKVFLENVIRDAV K R I T R G 0 2 0 0 0 0 2 1 0 2 1 0 0 0 0 1 1 0 1 0 0 0 11 1 1335.7147 P62805 P62805 46 56 HIST1H4A Histone H4 yes yes 1;2;3 1.5319E-26 202.65 By MS/MS By MS/MS 7.71 2.54 2 1 1 3 5 7 5 7 17 7684400000 0 276390000 7408000000 11389 1033 11979 49209;49210;49211;49212;49213;49214;49215;49216;49217;49218;49219;49220;49221;49222;49223;49224;49225;49226;49227;49228;49229;49230;49231;49232 40991;40992;40993;40994;40995;40996;40997;40998;40999;41000;41001;41002;41003;41004;41005;41006;41007;41008;41009;41010;41011;41012 41010 21 0 671490000 2366400000 RISGLIYEETRGVLK TKPAIRRLARRGGVKRISGLIYEETRGVLK RISGLIYEETRGVLKVFLENVIRDAVTYTE K R I L K V 0 2 0 0 0 0 2 2 0 2 2 1 0 0 0 1 1 0 1 1 0 0 15 2 1732.9836 P62805 P62805 46 60 HIST1H4A Histone H4 yes yes 3 0.00011689 116.78 By matching By MS/MS 8.5 0.5 1 1 1 1 11164000 1941100 0 9222800 11390 1033 11980 49233;49234 41013 41013 1 1666500 0 2946200 RKDPELWGSVLLESNPYR NENSLFKSLSRYLVRRKDPELWGSVLLESN PELWGSVLLESNPYRRPLIDQVVQTALSET R R K Y R R 0 2 1 1 0 0 2 1 0 0 3 1 0 0 2 2 0 1 1 1 0 0 18 2 2158.1171 Q00610 Q00610 950 967 CLTC Clathrin heavy chain 1 yes yes 2;3;4 7.3877E-09 130.24 By MS/MS By MS/MS 1.57 0.495 3 4 2 5 52800000 0 6344500 46455000 11391 1125 11981 49235;49236;49237;49238;49239;49240;49241 41014;41015;41016;41017;41018 41016 5 0 2857000 10136000 RKEDEVEEWQHR AEYTAKIALLEEARRRKEDEVEEWQHRAKE ARRRKEDEVEEWQHRAKEAQDDLVKTKEEL R R K H R A 0 2 0 1 0 1 4 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 12 2 1639.7703 P15311 P15311 437 448 EZR Ezrin yes yes 4 0.00011867 126.12 By MS/MS 3 0 1 1 9695900 0 0 9695900 11392 569 11982 49242 41019 41019 1 0 0 1880600 RKGDEVDGVDEVAK EALKKQLPGVKSEGKRKGDEVDGVDEVAKK KRKGDEVDGVDEVAKKKSKKEKDKDSKLEK K R K A K K 1 1 0 3 0 0 2 2 0 0 0 2 0 0 0 0 0 0 0 3 0 0 14 2 1515.7529 P09874 P09874 208 221 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00017472 152.47 By MS/MS By MS/MS 3 1.36 1 5 3 2 1 1 3 10 181780000 0 81472000 100310000 11393 492 11983 49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253;49254;49255 41020;41021;41022;41023;41024;41025;41026;41027;41028;41029 41022 10 0 36688000 20061000 RKLEGDSTDLSDQIAELQAQIAELK LRREEKQRQELEKTRRKLEGDSTDLSDQIA SDQIAELQAQIAELKMQLAKKEEELQAALA R R K L K M 3 1 0 3 0 3 3 1 0 2 4 2 0 0 0 2 1 0 0 0 0 0 25 2 2770.4349 P35579 P35579 1051 1075 MYH9 Myosin-9 yes yes 4 5.0133E-08 82.849 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 12381000 0 6672600 5708800 11394 752 11984 49256;49257 41030;41031 41030 2 0 3004800 1230100 RKNQDEESQEAPELLK KQTKEALTRKQQKCRRKNQDEESQEAPELL KNQDEESQEAPELLKRPKEYTVRFTFPDPP R R K L K R 1 1 1 1 0 2 4 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 16 2 1912.949 Q8NE71 Q8NE71 588 603 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 3 0.0086406 61.524 By MS/MS 2 0 1 1 3937300 0 3937300 0 11395 1638 11985 49258 41032 41032 1 0 1773000 0 RKPDTIEVQQMK ILALCMGNHELYMRRRKPDTIEVQQMKAQA MRRRKPDTIEVQQMKAQAREEKHQKQMERA R R K M K A 0 1 0 1 0 2 1 0 0 1 0 2 1 0 1 0 1 0 0 1 0 0 12 2 1471.7817 P15311;P26038;P35241 P26038 295 306 EZR;MSN;RDX Ezrin;Moesin;Radixin no no 3 0.00029143 118.87 By MS/MS By MS/MS 3.43 1.59 1 1 2 1 1 1 1 6 81250000 0 28018000 53232000 11396 664;569;742 11986 49259;49260;49261;49262;49263;49264;49265 41033;41034;41035;41036 41034 4 0 11944000 10238000 RKQEELQQLEQQR EEARRRQHEAEEGVRRKQEELQQLEQQRRQ VRRKQEELQQLEQQRRQQEELLAEENQRLR R R K Q R R 0 2 0 0 0 5 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 13 2 1711.8965 Q15149 Q15149 2705 2717 PLEC Plectin yes yes 3;4 0.0021911 94.688 By MS/MS By MS/MS 1 0 3 2 1 34452000 0 18236000 16215000 11397 1348 11987 49266;49267;49268 41037;41038;41039 41039 3 0 8913600 3493900 RKQELAETLANLER PQIPDTRRELAELVKRKQELAETLANLERQ KRKQELAETLANLERQIYAFEGSYLEDTQM K R K E R Q 2 2 1 0 0 1 3 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 14 2 1669.9111 Q9HAF1 Q9HAF1 25 38 MEAF6 Chromatin modification-related protein MEAF6 yes yes 3 0.0030299 81.448 By MS/MS 7 0 1 1 8835400 0 0 8835400 11398 2001 11988 49269 41040 41040 1 0 0 1567800 RKTVTAMDVVYALK ENVIRDAVTYTEHAKRKTVTAMDVVYALKR KRKTVTAMDVVYALKRQGRTLYGFGG____ K R K L K R 2 1 0 1 0 0 0 0 0 0 1 2 1 0 0 0 2 0 1 3 0 0 14 2 1593.8912 P62805 P62805 79 92 HIST1H4A Histone H4 yes yes 2;3 0.00081601 159.94 By MS/MS By MS/MS 9 0.577 1 4 1 2 4 388770000 0 15680000 373090000 11399 1033 11989;11990 49270;49271;49272;49273;49274;49275 41041;41042;41043;41044;41045;41046;41047 41043 492 7 0 20086000 117620000 RLAEDEAFQR EIALKEKEAENERLRRLAEDEAFQRRRLEE NERLRRLAEDEAFQRRRLEEQAAQHKADIE R R L Q R R 2 2 0 1 0 1 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 10 1 1233.6102 Q15149 Q15149 2005 2014 PLEC Plectin yes yes 2;3 0.00026617 142.83 By MS/MS By MS/MS 1 0 2 1 1 3055900 0 0 3055900 11400 1348 11991 49276;49277 41048;41049 41049 2 0 0 658440 RLAIQLGAQALLGAAK LDALADGGVKMGLPRRLAIQLGAQALLGAA LAIQLGAQALLGAAKMLLDSEQHPCQLKDN R R L A K M 5 1 0 0 0 2 0 2 0 1 4 1 0 0 0 0 0 0 0 0 0 0 16 1 1592.9726 Q96C36 Q96C36 200 215 PYCR2 Pyrroline-5-carboxylate reductase 2 yes yes 2;3 0.0050925 60.861 By MS/MS By MS/MS 6 0 3 1 2 6910600 0 2320000 4590600 11401 1758 11992 49278;49279;49280 41050;41051 41050 1 0 803110 686800 RLAQQMENRPSVQAALK ASMQQQQQLASARNRRLAQQMENRPSVQAA AQQMENRPSVQAALKLKQSLKQRLGKSNIQ R R L L K L 3 2 1 0 0 3 1 0 0 0 2 1 1 0 1 1 0 0 0 1 0 0 17 2 1939.0422 Q9Y3Y2 Q9Y3Y2 54 70 CHTOP Chromatin target of PRMT1 protein yes yes 3 0.00061163 87.388 By matching By MS/MS 6.33 0.471 2 1 1 2 17904000 0 4683200 13220000 11402 2280 11993 49281;49282;49283 41052 41052 1 0 1621200 2025900 RLASSVLR ______________________________ SMLRLQKRLASSVLRCGKKKVWLDPNETNE K R L L R C 1 2 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 8 1 900.5505 P84098 P84098 9 16 RPL19 60S ribosomal protein L19 yes yes 2 0.0014815 124.08 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 27931000 0 16127000 11804000 11403 1111 11994 49284;49285;49286;49287 41053;41054 41053 2 0 8501900 2017500 RLAVYQAGASEGAER KLPKRLLRDADDLKKRLAVYQAGASEGAER RLAVYQAGASEGAERSLSAIRERFGPLVEQ K R L E R S 4 2 0 0 0 1 2 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 15 1 1576.7958 CON__Q03247 CON__Q03247 175 189 yes yes 2;3 5.9004E-16 127.71 By MS/MS 6.33 0.471 2 1 3 32358000 0 0 32358000 + 11404 72 11995 49288;49289;49290 41055;41056;41057 41057 3 0 0 4841100 RLDADLAR QLAMQTYEMVDKHIRRLDADLARFEADLKD MVDKHIRRLDADLARFEADLKDKMEGSDFE R R L A R F 2 2 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 928.50903 Q8WYH8 Q8WYH8 99 106 ING5 Inhibitor of growth protein 5 yes yes 2 0.0057736 105.52 By MS/MS 6 0 1 1 8288600 0 0 8288600 11405 1701 11996 49291 41058 41058 1 0 0 1240100 RLDLVHTAALMLDK ISHDDLKGDPLLDQRRLDLVHTAALMLDKN RRLDLVHTAALMLDKNNLVKYDKKTGNFQV R R L D K N 2 1 0 2 0 0 0 0 1 0 4 1 1 0 0 0 1 0 0 1 0 0 14 1 1594.8865 O75643 O75643 953 966 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.7482E-25 205.87 By matching By MS/MS 1.25 0.433 3 1 1 3 39593000 0 1149100 38444000 11406 277 11997 49292;49293;49294;49295 41059;41060;41061 41060 3 0 561670 8308600 RLDLVHTAALMLDKNNLVK ISHDDLKGDPLLDQRRLDLVHTAALMLDKN VHTAALMLDKNNLVKYDKKTGNFQVTELGR R R L V K Y 2 1 2 2 0 0 0 0 1 0 5 2 1 0 0 0 1 0 0 2 0 0 19 2 2163.2198 O75643 O75643 953 971 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 4 0.0018809 64.2 By MS/MS 1 0 1 1 11141000 0 0 11141000 11407 277 11998 49296 41062 41062 1 0 0 2400500 RLDPNKYPVPENWLHK VDLIQKHKSIEEIVRRLDPNKYPVPENWLH LDPNKYPVPENWLHKEAHQLFLEPEVLDPE R R L H K E 0 1 2 1 0 0 1 0 1 0 2 2 0 0 3 0 0 1 1 1 0 0 16 2 2005.0534 P39748 P39748 262 277 FEN1 Flap endonuclease 1 yes yes 4 0.00050829 89.642 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 66508000 0 17429000 49079000 11408 780 11999 49297;49298;49299 41063;41064;41065;41066;41067 41067 5 0 4492600 7002600 RLDQELDFILSQQK TSLHREVEKVKLDQKRLDQELDFILSQQKE KRLDQELDFILSQQKELEDLLSPLEELVKE K R L Q K E 0 1 0 2 0 3 1 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 14 1 1731.9155 P37198 P37198 388 401 NUP62 Nuclear pore glycoprotein p62 yes yes 3 0.00027446 105.78 By MS/MS 3 0 1 1 7159700 0 0 7159700 11409 767 12000 49300 41068 41068 1 0 0 1388600 RLDQLER HVMRKEQRKEEKEKRRLDQLERKKETQRLL RKEEKEKRRLDQLERKKETQRLLEEEDSKL R R L E R K 0 2 0 1 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 928.50903 Q96CT7 Q96CT7 60 66 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 7.3273E-08 173.28 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 43353000 0 10404000 32949000 11410 1761 12001 49301;49302;49303;49304;49305 41069;41070 41070 2 0 4154700 4960100 RLDQVEQELNELR IITRVETYLNENLRKRLDQVEQELNELRET RKRLDQVEQELNELRETEGGTVLTATTSEL K R L L R E 0 2 1 1 0 2 3 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 13 1 1640.8482 Q9UQE7 Q9UQE7 839 851 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 5.5447E-88 249.98 By MS/MS 1.5 0.5 1 1 2 30204000 0 0 30204000 11411 2222 12002 49306;49307 41071 41071 1 0 0 6739200 RLDSARPHFMSQF HTLLVTDTGCEILTRRLDSARPHFMSQF__ TRRLDSARPHFMSQF_______________ R R L Q F - 1 2 0 1 0 1 0 0 1 0 1 0 1 2 1 2 0 0 0 0 0 0 13 2 1590.7725 P53582 P53582 374 386 METAP1 Methionine aminopeptidase 1 yes yes 3 0.030225 60.364 By MS/MS By MS/MS 5 0 2 1 1 35701000 0 16168000 19533000 11412 920 12003 49308;49309 41072;41073 41073 2 0 4167500 2724500 RLDTDLAR QLAMQTYEMVDKHIRRLDTDLARFEADLKE MVDKHIRRLDTDLARFEADLKEKQIESSDY R R L A R F 1 2 0 2 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 1 958.51959 Q9UNL4 Q9UNL4 99 106 ING4 Inhibitor of growth protein 4 yes yes 2 0.026332 88.177 By MS/MS 6.5 0.5 1 1 2 15864000 0 0 15864000 11413 2207 12004 49310;49311 41074 41074 1 0 0 2491400 RLEAELAAHEPAIQGVLDTGK GRDLTGVQNLRKKHKRLEAELAAHEPAIQG AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQ K R L G K K 4 1 0 1 0 1 3 2 1 1 3 1 0 0 1 0 1 0 0 1 0 0 21 1 2217.1753 Q13813 Q13813 1808 1828 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.064073 35.66 By MS/MS 1 0 1 1 4681000 0 0 4681000 11414 1268 12005 49312 41075 41075 0 0 0 1008600 RLEAELAAHEPAIQGVLDTGKK GRDLTGVQNLRKKHKRLEAELAAHEPAIQG AHEPAIQGVLDTGKKLSDDNTIGKEEIQQR K R L K K L 4 1 0 1 0 1 3 2 1 1 3 2 0 0 1 0 1 0 0 1 0 0 22 2 2345.2703 Q13813 Q13813 1808 1829 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 4 0.00010411 74.062 By MS/MS 1 0 1 1 22276000 0 0 22276000 11415 1268 12006 49313 41076 41076 1 0 0 4799700 RLEALAAEFSSNWQK QAEQRVMSRVHSLERRLEALAAEFSSNWQK RLEALAAEFSSNWQKEAMRLERLELRQGAP R R L Q K E 3 1 1 0 0 1 2 0 0 0 2 1 0 1 0 2 0 1 0 0 0 0 15 1 1748.8846 Q9UH99 Q9UH99 286 300 SUN2 SUN domain-containing protein 2 yes yes 3 0.0072638 62.055 By MS/MS 3 0 1 1 5868800 0 0 5868800 11416 2148 12007 49314 41077 41077 1 0 0 1138300 RLEAVLASR EREPGAAGVRRALGRRLEAVLASRSEANAV RRALGRRLEAVLASRSEANAVFDILAVLQS R R L S R S 2 2 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 1 1013.5982 Q9BVI4 Q9BVI4 17 25 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.0010652 116.12 By MS/MS By matching 4.5 0.5 1 1 1 1 17012000 0 13430000 3581700 11417 1914 12008 49315;49316 41078 41078 1 0 4456900 499590 RLEDQLAGLQQELAALALK MTQESFQESSVKELRRLEDQLAGLQQELAA QLAGLQQELAALALKQSSVAEEVGLLPQQI R R L L K Q 4 1 0 1 0 3 2 1 0 0 6 1 0 0 0 0 0 0 0 0 0 0 19 1 2079.1688 Q9UH99 Q9UH99 413 431 SUN2 SUN domain-containing protein 2 yes yes 3 1.557E-06 104.45 By MS/MS 3 0.816 1 1 1 3 14204000 0 0 14204000 11418 2148 12009 49317;49318;49319 41079 41079 1 0 0 2730700 RLEEEEAAAEKEDR MKKLERQRAQEEQAKRLEEEEAAAEKEDRG KRLEEEEAAAEKEDRGRPYTLSVALPGSIL K R L D R G 3 2 0 1 0 0 6 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 14 2 1673.7857 Q5T280 Q5T280 56 69 C9orf114 Putative methyltransferase C9orf114 yes yes 3 1.0409E-07 167.37 By MS/MS 4.5 0.5 1 1 2 14241000 0 0 14241000 11419 1449 12010 49320;49321 41080;41081 41081 2 0 0 2027000 RLEEELR LRSEESVSRLPEEIRRLEEELRQLKSDSHG SRLPEEIRRLEEELRQLKSDSHGPKEDGGF R R L L R Q 0 2 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 7 1 943.50869 Q07065 Q07065 372 378 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00027608 157.33 By MS/MS 3 0 1 1 19073000 0 0 19073000 11420 1176 12011 49322 41082 41082 1 0 0 3699200 RLEELEAK EEEERQKREEEERIKRLEELEAKRKEEERL EEEERIKRLEELEAKRKEEERLEQEKRERK K R L A K R 1 1 0 0 0 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 8 1 986.53966 O60841 O60841 368 375 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.060516 76.774 By matching By MS/MS 1.5 0.5 1 1 1 1 4604800 0 1932700 2672100 11421 236 12012 49323;49324 41083 41083 1 0 944700 603840 RLEEQEEDTFR APPPEPRSLTAEEVKRLEEQEEDTFRELRI EEVKRLEEQEEDTFRELRIFLRNVTHRLAI K R L F R E 0 2 0 1 0 1 4 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 11 1 1450.6688 Q6PL18 Q6PL18 977 987 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 1.7171E-07 162.38 By matching By MS/MS 1.5 0.5 1 1 1 1 2716300 0 991580 1724700 11422 1498 12013 49325;49326 41084 41084 1 0 484670 389740 RLEFENQK FEEEKVKRQNEIAKKRLEFENQKTRLGIQL QNEIAKKRLEFENQKTRLGIQLDFEKNQLK K R L Q K T 0 1 1 0 0 1 2 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 8 1 1062.5458 Q14683 Q14683 807 814 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0017138 122.18 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 8117000 0 2745500 5371500 11423 1312 12014 49327;49328 41085;41086 41086 1 0 1342000 1213900 RLEIEHSVPK KAIETFSGKVELQGKRLEIEHSVPKKQRSR ELQGKRLEIEHSVPKKQRSRKIQIRNIPPQ K R L P K K 0 1 0 0 0 0 2 0 1 1 1 1 0 0 1 1 0 0 0 1 0 0 10 1 1206.6721 Q9NZI8 Q9NZI8 67 76 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 0.00096391 96.756 By MS/MS By MS/MS 5.45 2.15 3 1 2 2 1 1 1 3 8 262820000 0 97828000 164990000 11424 2104 12015 49329;49330;49331;49332;49333;49334;49335;49336;49337;49338;49339 41087;41088;41089;41090;41091;41092;41093 41087 7 0 38594000 39634000 RLELQLQEVQGR SSLQTARQEGEQRRRRLELQLQEVQGRAGD RRRRLELQLQEVQGRAGDGERARAEAAEKL R R L G R A 0 2 0 0 0 3 2 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 12 1 1467.8158 Q7Z406 Q7Z406 1273 1284 MYH14 Myosin-14 yes yes 3 0.010345 70.622 By MS/MS 1 0 1 1 7620700 0 7620700 0 11425 1531 12016 49340 41094 41094 1 0 3724900 0 RLEQLHGELR RHLGHVQQLLRSSNRRLEQLHGELRELHAR RSSNRRLEQLHGELRELHARILLPGPGPGP R R L L R E 0 2 0 0 0 1 2 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 10 1 1249.6891 Q6P5Z2 Q6P5Z2 63 72 PKN3 Serine/threonine-protein kinase N3 yes yes 3 0.0015879 89.171 By MS/MS 2.75 1.48 1 1 1 1 4 8246700 0 0 8246700 11426 1492 12017 49341;49342;49343;49344 41095 41095 1 0 0 1725900 RLESFLHDSWR LAKKEQKKGKGLRFKRLESFLHDSWRQKRD LRFKRLESFLHDSWRQKRDKVRLRRLEVKP K R L W R Q 0 2 0 1 0 0 1 0 1 0 2 0 0 1 0 2 0 1 0 0 0 0 11 1 1444.7211 Q6DKI1 Q6DKI1 60 70 RPL7L1 60S ribosomal protein L7-like 1 yes yes 3 0.0050273 79.23 By matching By MS/MS 6.5 0.5 2 2 1 3 19176000 0 3484700 15691000 11427 1471 12018 49345;49346;49347;49348 41096;41097 41097 2 0 1206300 2516300 RLGMDGYR QGKVFERCELARTLKRLGMDGYRGISLANW ELARTLKRLGMDGYRGISLANWMCLAKWES K R L Y R G 0 2 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 8 1 966.47053 P61626 P61626 32 39 LYZ Lysozyme C yes yes 2 7.3114E-09 170.24 By MS/MS 6 3 1 1 1 1 1 1 1 1 8 221200000 221200000 0 0 11428 997 12019 49349;49350;49351;49352;49353;49354;49355;49356 41098;41099;41100;41101;41102 41099 4 255700000 0 0 RLHGLPEQFLYGTATK RKEWLTNFMEDRRQRRLHGLPEQFLYGTAT LHGLPEQFLYGTATKHLTYNDFINKELILF R R L T K H 1 1 0 0 0 1 1 2 1 0 3 1 0 1 1 0 2 0 1 0 0 0 16 1 1829.9788 Q02880 Q02880 697 712 TOP2B DNA topoisomerase 2-beta yes yes 3 0.0014239 62.475 By MS/MS 1 0 1 1 0 0 0 0 11429 1150 12020 49357 41103 41103 1 0 0 0 RLIDLHSPSEIVK EGSKTWDRFQMRIHKRLIDLHSPSEIVKQI HKRLIDLHSPSEIVKQITSISIEPGVEVEV K R L V K Q 0 1 0 1 0 0 1 0 1 2 2 1 0 0 1 2 0 0 0 1 0 0 13 1 1505.8566 P60866 P60866 87 99 RPS20 40S ribosomal protein S20 yes yes 3 0.0029788 80.746 By MS/MS By matching 8 0 2 1 1 10027000 0 9039000 987580 11430 968 12021 49358;49359 41104 41104 1 0 4112400 151410 RLIVDVIR ENAEMDARTILLNTKRLIVDVIRFQPGETL TILLNTKRLIVDVIRFQPGETLTEILETPA K R L I R F 0 2 0 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 2 0 0 8 1 982.62875 P46940 P46940 1390 1397 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.043636 80.455 By MS/MS 2 0 1 1 4835400 0 4835400 0 11431 835 12022 49360 41105 41105 1 0 2177400 0 RLLAIQAK VDTEAEDMISAVKSRRLLAIQAKKEREIQE ISAVKSRRLLAIQAKKEREIQEREMKVKLE R R L A K K 2 1 0 0 0 1 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 8 1 911.59164 Q9UIG0 Q9UIG0 846 853 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.016012 94.777 By matching By MS/MS 1.5 0.5 1 1 1 1 6985500 0 2208900 4776600 11432 2164 12023 49361;49362 41106 41106 1 0 1079700 1079400 RLLEDGEDFNLGDALDSSNSMQTIQK LNIKVKLEAEIATYRRLLEDGEDFNLGDAL GDALDSSNSMQTIQKTTTRRIVDGKVVSET R R L Q K T 1 1 2 4 0 2 2 2 0 1 4 1 1 1 0 3 1 0 0 0 0 0 26 1 2895.3556 P05783 P05783 382 407 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 5.2839E-39 184.59 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 41189000 0 12210000 28979000 11433 436 12024 49363;49364;49365 41107;41108;41109 41109 3 0 3147400 4233300 RLLEGEDAHLSSSQFSSGSQSSR LDVKTRLEQEIATYRRLLEGEDAHLSSSQF HLSSSQFSSGSQSSRDVTSSSRQIRTKVMD R R L S R D 1 2 0 1 0 2 2 2 1 0 3 0 0 1 0 8 0 0 0 0 0 0 23 1 2464.1579 CON__P02533;P02533;CON__Q61782 CON__P02533 417 439 KRT14 Keratin, type I cytoskeletal 14 yes no 3 0.010029 41.423 By MS/MS By matching 6.5 2.06 1 1 1 1 3 1 16466000 12995000 0 3470800 + 11434 35 12025 49366;49367;49368;49369 41110;41111 41111 0 9439000 0 484120 RLLEGEDAHLTQYK LDVKTRLEQEIATYRRLLEGEDAHLTQYKK RRLLEGEDAHLTQYKKEPVTTRQVRTIVEE R R L Y K K 1 1 0 1 0 1 2 1 1 0 3 1 0 0 0 0 1 0 1 0 0 0 14 1 1671.858 Q04695;CON__Q04695 Q04695 386 399 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.00023476 112.43 By MS/MS 5 0 1 1 38984000 0 0 38984000 + 11435 73 12026 49370 41112 41112 0 0 0 5437500 RLLINLYK LDANFTVVVMMPEAKRLLINLYKLVKSQIS VMMPEAKRLLINLYKLVKSQISVYSELNKI K R L Y K L 0 1 1 0 0 0 0 0 0 1 3 1 0 0 0 0 0 0 1 0 0 0 8 1 1031.6492 Q9H8H0 Q9H8H0 669 676 NOL11 Nucleolar protein 11 yes yes 2 0.035145 84.244 By MS/MS 3 0 1 1 4198200 0 4198200 0 11436 1995 12027 49371 41113 41113 1 0 1789700 0 RLLPSLIGR LLSSFDFFLTDARIRRLLPSLIGRHFYQRK TDARIRRLLPSLIGRHFYQRKKVPVSVNLL R R L G R H 0 2 0 0 0 0 0 1 0 1 3 0 0 0 1 1 0 0 0 0 0 0 9 1 1023.6553 O76021 O76021 163 171 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 6.0529E-11 169.44 By MS/MS By MS/MS 3.43 1.76 1 1 2 2 1 2 5 138060000 0 65744000 72315000 11437 295 12028 49372;49373;49374;49375;49376;49377;49378 41114;41115;41116 41115 3 0 23157000 13905000 RLMAEDEEGYRK EQKKENERIEKERMRRLMAEDEEGYRKLID RMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ R R L R K L 1 2 0 1 0 0 3 1 0 0 1 1 1 0 0 0 0 0 1 0 0 0 12 2 1495.7089 P51531;P51532 P51532 529 540 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 3 0.020378 69.03 By MS/MS 1 0 1 1 4315600 0 0 4315600 11438 894;893 12029 49379 41117 41117 1 0 0 929870 RLMDGEEPLPMLPSYK KIPNFDVREIVNNIRRLMDGEEPLPMLPSY LMDGEEPLPMLPSYKNFKGTIEELAPNQYV R R L Y K N 0 1 0 1 0 0 2 1 0 0 3 1 2 0 3 1 0 0 1 0 0 0 16 1 1874.927 P11388 P11388 878 893 TOP2A DNA topoisomerase 2-alpha yes yes 3 0.0064853 57.315 By MS/MS 1 0 1 1 5717100 0 0 5717100 11439 524 12030 49380 41118 41118 1 0 0 1231800 RLNDFASTVR VPEPKIIDAALRACRRLNDFASTVRILEVV LRACRRLNDFASTVRILEVVKDKAGPHKEI R R L V R I 1 2 1 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 0 10 1 1177.6204 P20674 P20674 98 107 COX5A Cytochrome c oxidase subunit 5A, mitochondrial yes yes 2 0.0011114 132.88 By MS/MS 9 0 1 1 4534900 0 0 4534900 11440 618 12031 49381 41119 41119 1 0 0 1448600 RLNMATLR RMGGEEAEIRFCEHKRLNMATLRMTWEAKV IRFCEHKRLNMATLRMTWEAKVQLKEILIN K R L L R M 1 2 1 0 0 0 0 0 0 0 2 0 1 0 0 0 1 0 0 0 0 0 8 1 973.54912 Q08211 Q08211 944 951 DHX9 ATP-dependent RNA helicase A yes yes 2 1.6446E-08 164.77 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 15945000 0 3565300 12380000 11441 1182 12032 49382;49383;49384;49385;49386 41120;41121;41122 41122 3 0 1742700 2725400 RLNVALTR RANEHQGIGFLNDPRRLNVALTRARYGVII GFLNDPRRLNVALTRARYGVIIVGNPKALS R R L T R A 1 2 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 1 941.57705 Q92900 Q92900 869 876 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.028563 87.181 By MS/MS 2 0 1 1 3704600 0 0 3704600 11442 1729 12033 49387 41123 41123 1 0 0 837170 RLNVWDLSK SPHNETILASSGTDRRLNVWDLSKIGEEQS SSGTDRRLNVWDLSKIGEEQSPEDAEDGPP R R L S K I 0 1 1 1 0 0 0 0 0 0 2 1 0 0 0 1 0 1 0 1 0 0 9 1 1129.6244 Q09028;Q16576 Q09028 341 349 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.00077677 123.35 By MS/MS 4 1.41 1 1 1 1 1 5 78051000 0 78051000 0 11443 1188;1390 12034 49388;49389;49390;49391;49392 41124;41125 41124 2 0 22960000 0 RLPDAHSDYAR LSFRRSPTKSSLDYRRLPDAHSDYARYSGS LDYRRLPDAHSDYARYSGSYNDYLRAAQMH R R L A R Y 2 2 0 2 0 0 0 0 1 0 1 0 0 0 1 1 0 0 1 0 0 0 11 1 1299.632 Q96PK6 Q96PK6 637 647 RBM14 RNA-binding protein 14 yes yes 2;3 4.5377E-13 174.98 By MS/MS By MS/MS 4.5 2.14 3 1 1 1 1 5 83991000 0 2126200 81864000 11444 1818 12035 49393;49394;49395;49396;49397;49398 41126;41127;41128;41129;41130 41129 5 0 906410 15940000 RLPNGTELR AVPLARAFLGQVLVRRLPNGTELRGRIVET GQVLVRRLPNGTELRGRIVETEAYLGPEDE R R L L R G 0 2 1 0 0 0 1 1 0 0 2 0 0 0 1 0 1 0 0 0 0 0 9 1 1054.5883 P29372 P29372 110 118 MPG DNA-3-methyladenine glycosylase yes yes 2 0.00016119 143.45 By MS/MS By MS/MS 6 0 2 1 1 24181000 0 7262800 16918000 11445 698 12036 49399;49400 41131;41132 41131 2 0 2514100 2531100 RLPPQQIEK ______________________________ ALDLMRRLPPQQIEKNLSDLIDLVPSLCED R R L E K N 0 1 0 0 0 2 1 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 9 1 1107.64 P47756 P47756 15 23 CAPZB F-actin-capping protein subunit beta yes yes 2 0.030414 83.948 By MS/MS 6 0 1 1 3336500 0 3336500 0 11446 837 12037 49401 41133;41134 41134 2 0 1155000 0 RLQDFLR RATMRRREESLGEARRLQDFLRSLDDFQAW EESLGEARRLQDFLRSLDDFQAWLGRTQTA R R L L R S 0 2 0 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 7 1 946.53485 O15020 O15020 1066 1072 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.029203 108.46 By MS/MS 1 0 1 1 5363600 0 5363600 0 11447 160 12038 49402 41135 41135 1 0 2621600 0 RLQGQLEQGDDTAAER LRADTKRLKLLEEERRLQGQLEQGDDTAAE LQGQLEQGDDTAAERLEKVYEELRATGAAA R R L E R L 2 2 0 2 0 3 2 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 16 1 1785.8606 Q8NE71 Q8NE71 396 411 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2;3 1.4153E-07 147.07 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 17274000 0 7808300 9465400 11448 1638 12039 49403;49404;49405;49406 41136;41137;41138;41139 41138 4 0 3516200 2041000 RLQLFPR QHRSRSTSRCLPPPRRLQLFPRSCSPPRRF SRCLPPPRRLQLFPRSCSPPRRFEPCSSSY R R L P R S 0 2 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 7 1 928.56067 Q5T749 Q5T749 261 267 KPRP Keratinocyte proline-rich protein yes yes 2 0.0051578 143.37 By MS/MS By matching 4 4.24 2 1 2 1 35980000 25566000 0 10415000 11449 1453 12040 49407;49408;49409 41140;41141 41140 2 33729000 0 2244000 RLQQQELR CVKEVEKLQEKREKRRLQQQELREKRAQDV QEKREKRRLQQQELREKRAQDVDATNPNYE R R L L R E 0 2 0 0 0 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 8 1 1069.5992 O00139 O00139 174 181 KIF2A Kinesin-like protein KIF2A yes yes 2 0.014388 95.909 By MS/MS 4 0.816 1 1 1 3 9738000 0 0 9738000 11450 104 12041 49410;49411;49412 41142 41142 1 0 0 1421700 RLQQQQRPEDAEDGAEGGGK ______________________________ QRPEDAEDGAEGGGKRGEAGWEGGYPEIVK R R L G K R 2 2 0 2 0 4 3 4 0 0 1 1 0 0 1 0 0 0 0 0 0 0 20 2 2168.0206 Q08J23 Q08J23 9 28 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 1.5033E-05 85.808 By MS/MS 2 0 1 1 1524700 0 1524700 0 11451 1187 12042 49413 41143 41143 1 0 686580 0 RLQSIGTENTEENRR KGILAADESTGSIAKRLQSIGTENTEENRR RLQSIGTENTEENRRFYRQLLLTADDRVNP K R L R R F 0 3 2 0 0 1 3 1 0 1 1 0 0 0 0 1 2 0 0 0 0 0 15 2 1801.9031 P04075 P04075 43 57 ALDOA Fructose-bisphosphate aldolase A yes yes 3 0.00027641 98.676 By MS/MS 4.5 0.5 1 1 2 4091800 0 0 4091800 11452 409 12043 49414;49415 41144 41144 1 0 0 580770 RLQTQVFK LDYILGLKIEDFLERRLQTQVFKLGLAKSI IEDFLERRLQTQVFKLGLAKSIHHARVLIR R R L F K L 0 1 0 0 0 2 0 0 0 0 1 1 0 1 0 0 1 0 0 1 0 0 8 1 1018.5924 P46781 P46781 109 116 RPS9 40S ribosomal protein S9 yes yes 2 0.0034627 110.03 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 417690000 0 156950000 260740000 11453 831 12044 49416;49417;49418;49419 41145;41146;41147 41147 3 0 88680000 46048000 RLQYTEHQQLEGWR GKLVKSIFRVVFHDRRLQYTEHQQLEGWRW RRLQYTEHQQLEGWRWNRPGDRILDIDIPM R R L W R W 0 2 0 0 0 3 2 1 1 0 2 0 0 0 0 0 1 1 1 0 0 0 14 1 1842.9125 Q12800;Q9NZI6 Q12800 128 141 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 3 0.00028849 105.19 By MS/MS 4 0 1 1 5973300 0 5973300 0 11454 1200 12045 49420 41148 41148 1 0 1982300 0 RLSSEVEALRR DGHLREKQRTQEELRRLSSEVEALRRQLLQ EELRRLSSEVEALRRQLLQEQESVKQAHLR R R L R R Q 1 3 0 0 0 0 2 0 0 0 2 0 0 0 0 2 0 0 0 1 0 0 11 2 1314.7368 P15924 P15924 1656 1666 DSP Desmoplakin yes yes 3 0.0024615 95.273 By MS/MS By MS/MS 6.57 2.77 1 1 1 1 1 1 1 5 2 15793000 10467000 5325800 0 11455 572 12046 49421;49422;49423;49424;49425;49426;49427 41149;41150 41150 1 11736000 5060300 0 RLSSFVTK FELVINLSMRGAGGRRLSSFVTKGYRTRRL MRGAGGRRLSSFVTKGYRTRRLAADFSVPL R R L T K G 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 2 1 0 0 1 0 0 8 1 936.53927 P27708 P27708 1404 1411 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.014523 95.815 By MS/MS 1 0 1 1 3295700 0 3295700 0 11456 681 12047 49428 41151 41151 1 0 1610900 0 RLTAEDLFEAR IIRQQGLASYDYVRRRLTAEDLFEARIISL YVRRRLTAEDLFEARIISLETYNLLREGTR R R L A R I 2 2 0 1 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 11 1 1319.6834 Q15149 Q15149 3783 3793 PLEC Plectin yes yes 2 0.0054178 106.16 By MS/MS 1 0 1 1 6622800 0 0 6622800 11457 1348 12048 49429 41152 41152 1 0 0 1427000 RLTAIIEEAEEAPGARPQLQDAWR AEFGSGTLDLPALTRRLTAIIEEAEEAPGA EEAPGARPQLQDAWRGPREPGPAGRGDGDS R R L W R G 5 3 0 1 0 2 4 1 0 2 2 0 0 0 2 0 1 1 0 0 0 0 24 2 2719.4042 P58107 P58107 2570 2593 EPPK1 Epiplakin yes no 4 0.0003996 58.92 By MS/MS 1 0 1 1 6536100 0 0 6536100 11458 958 12049 49430 41153 41153 1 0 0 1408300 RLTEQKGEQQIQK HQKELAAQLNEEAKRRLTEQKGEQQIQKAR KRRLTEQKGEQQIQKARKSNVSYKNPSLMP R R L Q K A 0 1 0 0 0 4 2 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 13 2 1584.8584 Q9Y5B9 Q9Y5B9 492 504 SUPT16H FACT complex subunit SPT16 yes yes 3 0.0024835 92.039 By MS/MS 2 0 1 1 3368200 0 3368200 0 11459 2296 12050 49431 41154 41154 1 0 1516800 0 RLTLEDLEDSWDR AEYALKRQEAIAQNRRLTLEDLEDSWDRGI NRRLTLEDLEDSWDRGIPRINTLFQKDRHT R R L D R G 0 2 0 3 0 0 2 0 0 0 3 0 0 0 0 1 1 1 0 0 0 0 13 1 1646.79 Q6P2Q9 Q6P2Q9 1402 1414 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.0040844 77.192 By MS/MS 1 0 1 1 2926200 0 0 2926200 11460 1490 12051 49432 41155 41155 1 0 0 630500 RLTPLQLEIQR RQKSQLQRLLQELRRRLTPLQLEIQRVVEK ELRRRLTPLQLEIQRVVEKADSWVEKEEPA R R L Q R V 0 2 0 0 0 2 1 0 0 1 3 0 0 0 1 0 1 0 0 0 0 0 11 1 1365.8092 Q8N163 Q8N163 895 905 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 3 0.011867 69.451 By MS/MS 2 0 1 1 4817600 0 0 4817600 11461 1598 12052 49433 41156 41156 1 0 0 1088700 RLTVNEAVK AQAASGFLLDPVRNRRLTVNEAVKEGVVGP DPVRNRRLTVNEAVKEGVVGPELHHKLLSA R R L V K E 1 1 1 0 0 0 1 0 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 1 1028.5978 Q15149 Q15149 2884 2892 PLEC Plectin yes yes 2 0.018679 88.37 By MS/MS 1 0 1 1 5801800 0 5801800 0 11462 1348 12053 49434 41157 41157 1 0 2835800 0 RLTVSSLQESGLK SPFVVPVASPSGDARRLTVSSLQESGLKVN ARRLTVSSLQESGLKVNQPASFAVSLNGAK R R L L K V 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 3 1 0 0 1 0 0 13 1 1416.7936 P21333 P21333 2334 2346 FLNA Filamin-A yes yes 2 6.8715E-05 159.44 By MS/MS By MS/MS 1 0 2 1 1 31766000 0 9013000 22753000 11463 623 12054 49435;49436 41158;41159 41158 2 0 4405400 4902500 RLTVTSLQETGLK SPFVVPVASLSDDARRLTVTSLQETGLKVN ARRLTVTSLQETGLKVNQPASFAVQLNGAR R R L L K V 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 1 3 0 0 1 0 0 13 1 1444.8249 Q14315 Q14315 2410 2422 FLNC Filamin-C yes yes 3 0.011877 65.219 By MS/MS 1 0 1 1 5707900 0 5707900 0 11464 1298 12055 49437 41160 41160 1 0 2789900 0 RLVEVDSSR VFEEEVRETRRRHERRLVEVDSSRQQEYDF RRRHERRLVEVDSSRQQEYDFKMAQALEEL R R L S R Q 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 9 1 1059.5673 Q03252 Q03252 240 248 LMNB2 Lamin-B2 yes yes 2 0.00010517 146.88 By MS/MS By MS/MS 3.2 1.33 1 2 1 1 2 3 62121000 0 14004000 48117000 11465 1156 12056 49438;49439;49440;49441;49442 41161;41162 41162 2 0 5986500 9245300 RLVQSPNSYFMDVK LHPSPEEEKRKHKKKRLVQSPNSYFMDVKC KRLVQSPNSYFMDVKCPGCYKITTVFSHAQ K R L V K C 0 1 1 1 0 1 0 0 0 0 1 1 1 1 1 2 0 0 1 2 0 0 14 1 1682.845 P42677;Q71UM5 P42677 23 36 RPS27;RPS27L 40S ribosomal protein S27;40S ribosomal protein S27-like no no 2 0.00086297 136.96 By MS/MS 9 0 1 1 3483600 0 0 3483600 11466 804;1516 12057 49443 41163 41163 1 0 0 1112800 RLWGDIYFNPK YADTFGDINYQEFAKRLWGDIYFNPKTRKF EFAKRLWGDIYFNPKTRKFTKKAPTSSSQR K R L P K T 0 1 1 1 0 0 0 1 0 1 1 1 0 1 1 0 0 1 1 0 0 0 11 1 1407.7299 Q15029 Q15029 342 352 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 0.0068833 104.01 By matching By MS/MS By MS/MS 2 0 4 1 1 2 33825000 4367000 2589000 26869000 11467 1335 12058 49444;49445;49446;49447 41164;41165;41166 41165 3 5261800 1165900 6071900 RMAEAELVQEGK KRKGHILELLTEVTRRMAEAELVQEGKARK VTRRMAEAELVQEGKARKTNPEIQSTLRKR R R M G K A 2 1 0 0 0 1 3 1 0 0 1 1 1 0 0 0 0 0 0 1 0 0 12 1 1359.6816 P31944 P31944 212 223 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 0.00013364 141.89 By MS/MS 8.57 1.29 1 2 2 2 7 49761000 49761000 0 0 11468 723 12059 49448;49449;49450;49451;49452;49453;49454 41167;41168;41169;41170;41171 41170 5 40782000 0 0 RMALLMAEMSR TKWSSKGNDIIAAAKRMALLMAEMSRLVRG AAAKRMALLMAEMSRLVRGGSGTKRALIQC K R M S R L 2 2 0 0 0 0 1 0 0 0 2 0 3 0 0 1 0 0 0 0 0 0 11 1 1307.6512 P18206 P18206 993 1003 VCL Vinculin yes yes 2 0.057419 46.462 By matching By MS/MS 6.33 0.471 2 1 1 2 105340000 0 17949000 87395000 11469 595 12060 49455;49456;49457 41172 41172 1 0 6213200 13177000 RMEEEQHHWDDR WRMEMRRYEEDMYWRRMEEEQHHWDDRRRM YWRRMEEEQHHWDDRRRMPDGGYPHGPPGP R R M D R R 0 2 0 2 0 1 3 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 12 1 1666.6907 Q96KR1 Q96KR1 670 681 ZFR Zinc finger RNA-binding protein yes yes 4 0.033003 51.875 By MS/MS 2.5 0.5 1 1 2 1493200 0 0 1493200 11470 1806 12061 49458;49459 41173 41173 1 0 0 314720 RMEELHNQEMQK NLLRQDLMRRQEELRRMEELHNQEMQKRKE ELRRMEELHNQEMQKRKEMQLRQEEERRRR R R M Q K R 0 1 1 0 0 2 3 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 12 1 1571.7184 P23246 P23246 548 559 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 7.8149E-05 131.83 By MS/MS By MS/MS 3.05 1.64 3 5 6 1 2 1 1 8 11 413570000 0 115570000 298000000 11471 638 12062;12063 49460;49461;49462;49463;49464;49465;49466;49467;49468;49469;49470;49471;49472;49473;49474;49475;49476;49477;49478 41174;41175;41176;41177;41178;41179;41180;41181;41182;41183;41184;41185;41186;41187;41188;41189;41190;41191;41192;41193;41194;41195 41184 285;286 22 0 51288000 60128000 RMEELHNQEMQKR NLLRQDLMRRQEELRRMEELHNQEMQKRKE LRRMEELHNQEMQKRKEMQLRQEEERRRRE R R M K R K 0 2 1 0 0 2 3 0 1 0 1 1 2 0 0 0 0 0 0 0 0 0 13 2 1727.8196 P23246 P23246 548 560 SFPQ Splicing factor, proline- and glutamine-rich yes yes 4 0.00083806 104.81 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 9057500 0 5888200 3169300 11472 638 12064 49479;49480;49481;49482 41196;41197 41196 2 0 2651500 643060 RMEELHNQEVQK MLMRQDLMRRQEELRRMEELHNQEVQKRKQ ELRRMEELHNQEVQKRKQLELRQEEERRRR R R M Q K R 0 1 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 12 1 1539.7464 Q15233 Q15233 325 336 NONO Non-POU domain-containing octamer-binding protein yes yes 2;3 3.3017E-09 172.13 By MS/MS By MS/MS 3.67 1.62 2 1 4 4 2 1 1 5 10 394160000 0 20008000 374150000 11473 1351 12065;12066 49483;49484;49485;49486;49487;49488;49489;49490;49491;49492;49493;49494;49495;49496;49497 41198;41199;41200;41201;41202;41203;41204;41205;41206;41207;41208;41209;41210;41211 41202 14 0 8281500 65154000 RMEELHNQEVQKR MLMRQDLMRRQEELRRMEELHNQEVQKRKQ LRRMEELHNQEVQKRKQLELRQEEERRRRE R R M K R K 0 2 1 0 0 2 3 0 1 0 1 1 1 0 0 0 0 0 0 1 0 0 13 2 1695.8475 Q15233 Q15233 325 337 NONO Non-POU domain-containing octamer-binding protein yes yes 4 3.1873E-05 151.7 By matching By MS/MS 3.4 1.85 1 1 1 1 1 1 4 12256000 0 73759 12182000 11474 1351 12067 49498;49499;49500;49501;49502 41212 41212 1 0 36052 2305400 RMFGGPGTASRPSSSR ______________________________ MFGGPGTASRPSSSRSYVTTSTRTYSLGSA R R M S R S 1 3 0 0 0 0 0 3 0 0 0 0 1 1 2 4 1 0 0 0 0 0 16 2 1649.8056 P08670 P08670 13 28 VIM Vimentin yes yes 3 0.00519 66.436 By MS/MS 4 0 1 1 9727700 0 9727700 0 11475 476 12068 49503 41213 41213 1 0 3228300 0 RMVVPAALK LKVFDGIPPPYDKKKRMVVPAALKVVRLKP PYDKKKRMVVPAALKVVRLKPTRKFAYLGR K R M L K V 2 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 2 0 0 9 1 983.59501 P40429;Q6NVV1 P40429 117 125 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.042347 79.451 By MS/MS By matching 7 0 2 1 1 24275000 0 12303000 11972000 11476 784 12069 49504;49505 41214 41214 1 0 7064500 2124300 RNEIDAEPPAK RKRRGGFAVQAKKPKRNEIDAEPPAKRHAT KKPKRNEIDAEPPAKRHATAEEVEEEERDR K R N A K R 2 1 1 1 0 0 2 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 11 1 1238.6255 Q8TDN6 Q8TDN6 21 31 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3 0.06025 40.475 By MS/MS 5 0 1 1 839000 0 839000 0 11477 1663 12070 49506 41215 41215 1 0 216270 0 RNEIDAEPPAKR RKRRGGFAVQAKKPKRNEIDAEPPAKRHAT KPKRNEIDAEPPAKRHATAEEVEEEERDRI K R N K R H 2 2 1 1 0 0 2 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 12 2 1394.7266 Q8TDN6 Q8TDN6 21 32 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3 0.0063968 84.365 By MS/MS 5 0 1 1 8510300 0 8510300 0 11478 1663 12071 49507 41216 41216 1 0 2193700 0 RNFAELK KKEVPAVPETLKKKRRNFAELKIKRLRKKF PETLKKKRRNFAELKIKRLRKKFAQKMLRK R R N L K I 1 1 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 7 1 876.48175 P18124 P18124 23 29 RPL7 60S ribosomal protein L7 yes yes 2 0.064352 86.512 By MS/MS 6 0 1 1 8981300 0 8981300 0 11479 594 12072 49508 41217 41217 1 0 3109000 0 RNFILDQTNVSAAAQR PQCLGKFIEIAARKKRNFILDQTNVSAAAQ NFILDQTNVSAAAQRRKMCLFAGFQRKAVV K R N Q R R 3 2 2 1 0 2 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 16 1 1802.9387 Q00839 Q00839 575 590 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 3 9.1197E-06 111.43 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 23550000 0 13026000 10524000 11480 1127 12073 49509;49510;49511 41218;41219;41220 41220 3 0 5745400 2378200 RNLDIERPTYTNLNR CAFMVDNEAIYDICRRNLDIERPTYTNLNR RNLDIERPTYTNLNRLISQIVSSITASLRF R R N N R L 0 3 3 1 0 0 1 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 15 2 1873.9759 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 215 229 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3;4 2.368E-87 252.75 By MS/MS By MS/MS 4.56 1.12 3 5 5 2 1 7 9 438090000 0 153820000 284280000 11481 1077;1515;1883;1078 12074 49512;49513;49514;49515;49516;49517;49518;49519;49520;49521;49522;49523;49524;49525;49526;49527 41221;41222;41223;41224;41225;41226;41227;41228;41229;41230;41231;41232;41233;41234;41235;41236 41233 15 0 44948000 43050000 RNPDTQWITK FFEVILIDPFHKAIRRNPDTQWITKPVHKH HKAIRRNPDTQWITKPVHKHREMRGLTSAG R R N T K P 0 1 1 1 0 1 0 0 0 1 0 1 0 0 1 0 2 1 0 0 0 0 10 1 1257.6466 P61313 P61313 144 153 RPL15 60S ribosomal protein L15 yes yes 2 0.061169 81.95 By MS/MS By matching 7 0 2 1 1 23437000 0 5330500 18107000 11482 991 12075 49528;49529 41237 41237 0 0 3060800 3212900 RNPDTQWITKPVHK FFEVILIDPFHKAIRRNPDTQWITKPVHKH RRNPDTQWITKPVHKHREMRGLTSAGRKSR R R N H K H 0 1 1 1 0 1 0 0 1 1 0 2 0 0 2 0 2 1 0 1 0 0 14 2 1718.9216 P61313 P61313 144 157 RPL15 60S ribosomal protein L15 yes yes 2;3;4 0.0014846 159.44 By MS/MS By MS/MS 6.25 1.09 1 1 1 5 4 4 131200000 0 31512000 99691000 11483 991 12076 49530;49531;49532;49533;49534;49535;49536;49537 41238;41239;41240;41241;41242 41242 4 0 17084000 17396000 RNQDLAPNSAEQASILSLVTK KPAPDETSFSEALLKRNQDLAPNSAEQASI PNSAEQASILSLVTKINNVIDNLIVAPGTF K R N T K I 3 1 2 1 0 2 1 0 0 1 3 1 0 0 1 3 1 0 0 1 0 0 21 1 2254.1917 Q12905 Q12905 60 80 ILF2 Interleukin enhancer-binding factor 2 yes yes 3 2.0096E-14 127.5 By MS/MS 5.5 1.12 1 1 1 1 4 45706000 0 45706000 0 11484 1210 12077 49538;49539;49540;49541 41243 41243 1 0 12726000 0 RNTIQFTHTQIEAIR HVIPNRGPYPYNQPKRNTIQFTHTQIEAIR RNTIQFTHTQIEAIRAGMQPGLTMVVGPPG K R N I R A 1 2 1 0 0 2 1 0 1 3 0 0 0 1 0 0 3 0 0 0 0 0 15 1 1826.9751 O60306 O60306 797 811 AQR Intron-binding protein aquarius yes yes 3 0.0030581 70.197 By MS/MS 2 0 1 1 3985300 0 3985300 0 11485 225 12078 49542 41244 41244 1 0 1794600 0 RNVLSDSRPAMAPGSSHLGAPASTTTAADATPSGSLAR EAYVPSKQRDLKISRRNVLSDSRPAMAPGS TTTAADATPSGSLARAGEAGKLEEVMQELR R R N A R A 8 3 1 2 0 0 0 3 1 0 3 0 1 0 4 7 4 0 0 1 0 0 38 2 3677.818 Q9BR76 Q9BR76 409 446 CORO1B Coronin-1B yes yes 5 2.5085E-19 71.036 By MS/MS 4 0 1 1 6453500 0 6453500 0 11486 1887 12079 49543 41245 41245 1 0 2141700 0 RNVQALEIELQSQLALK IEQISSYKSEITELRRNVQALEIELQSQLA VQALEIELQSQLALKQSLEASLAETEGRYC R R N L K Q 2 1 1 0 0 3 2 0 0 1 4 1 0 0 0 1 0 0 0 1 0 0 17 1 1952.1055 P13645;CON__P13645 P13645 370 386 KRT10 Keratin, type I cytoskeletal 10 yes no 3 1.7493E-05 99.663 By MS/MS 8.5 0.5 1 1 2 7977000 7977000 0 0 + 11487 56 12080 49544;49545 41246;41247 41246 2 5449400 0 0 RPAEDMEEEQAFK EETFPNTETNGEFGKRPAEDMEEEQAFKRS GKRPAEDMEEEQAFKRSRNTDEMVELRILL K R P F K R 2 1 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 13 1 1578.6984 P61978 P61978 22 34 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 0.00013084 155.33 By MS/MS 2.83 1.07 1 1 2 2 6 170280000 0 0 170280000 11488 1002 12081 49546;49547;49548;49549;49550;49551 41248;41249;41250 41249 3 0 0 28453000 RPAEDMEEEQAFKR EETFPNTETNGEFGKRPAEDMEEEQAFKRS KRPAEDMEEEQAFKRSRNTDEMVELRILLQ K R P K R S 2 2 0 1 0 1 4 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 14 2 1734.7995 P61978 P61978 22 35 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3;4 3.2273E-12 182.37 By MS/MS By MS/MS 3.81 1.82 3 2 3 7 3 1 1 1 6 15 719310000 0 73866000 645440000 11489 1002 12082;12083 49552;49553;49554;49555;49556;49557;49558;49559;49560;49561;49562;49563;49564;49565;49566;49567;49568;49569;49570;49571;49572 41251;41252;41253;41254;41255;41256;41257;41258;41259;41260;41261;41262;41263;41264;41265;41266;41267 41256 478 14 0 26717000 108570000 RPANQFVPR FPHMLFMVHPEYRPKRPANQFVPRLYGFKI PEYRPKRPANQFVPRLYGFKIHPMAYQLQL K R P P R L 1 2 1 0 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 0 0 9 1 1083.5938 P67870 P67870 178 186 CSNK2B Casein kinase II subunit beta yes yes 2 1.925E-16 180.18 By matching By MS/MS By MS/MS 7 0.632 1 3 1 1 1 3 34187000 455580 8705100 25027000 11490 1073 12084 49573;49574;49575;49576;49577 41268;41269;41270 41270 3 981870 4998500 4357300 RPAVVYIGSAGKPHER TMPPAVERLARSYLRRPAVVYIGSAGKPHE PAVVYIGSAGKPHERVEQKVFLMSESEKRK R R P E R V 2 2 0 0 0 0 1 2 1 1 0 1 0 0 2 1 0 0 1 2 0 0 16 2 1735.9482 Q9BUQ8 Q9BUQ8 623 638 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 3;4 1.9529E-05 142.74 By MS/MS 2.33 1.11 2 1 2 1 6 46253000 0 0 46253000 11491 1909 12085 49578;49579;49580;49581;49582;49583 41271;41272;41273;41274 41273 3 0 0 9863600 RPCFSALEVDETYVPK SDRVTKCCTESLVNRRPCFSALEVDETYVP PCFSALEVDETYVPKEFNAETFTFHADICT R R P P K E 1 1 0 1 1 0 2 0 0 0 1 1 0 1 2 1 1 0 1 2 0 0 16 1 1909.9244 CON__P02768-1;P02768 CON__P02768-1 509 524 ALB Serum albumin yes no 2;3 6.6953E-06 158.25 By MS/MS 6.1 2.55 2 2 1 1 1 2 1 10 440020000 440020000 0 0 + 11492 44 12086 49584;49585;49586;49587;49588;49589;49590;49591;49592;49593 41275;41276;41277;41278;41279;41280;41281;41282 41280 8 270070000 0 0 RPCFSALTPDETYVPK SEKVTKCCTESLVNRRPCFSALTPDETYVP PCFSALTPDETYVPKAFDEKLFTFHADICT R R P P K A 1 1 0 1 1 0 1 0 0 0 1 1 0 1 3 1 2 0 1 1 0 0 16 1 1879.9138 CON__P02769 CON__P02769 508 523 yes yes 2;3 1.6758E-05 154.85 By MS/MS By MS/MS By MS/MS 6 2.85 1 2 4 1 2 1 2 3 7 3 6 205760000 155580000 14062000 36119000 + 11493 45 12087 49594;49595;49596;49597;49598;49599;49600;49601;49602;49603;49604;49605;49606;49607;49608;49609 41283;41284;41285;41286;41287;41288;41289;41290 41284 8 121110000 55467000 8621500 RPDDVPLSLSPSKR AGAAHKPRARLAALKRPDDVPLSLSPSKRA KRPDDVPLSLSPSKRACASPSAQVEGSPVA K R P K R A 0 2 0 2 0 0 0 0 0 0 2 1 0 0 3 3 0 0 0 1 0 0 14 2 1565.8526 Q9UFC0 Q9UFC0 234 247 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes yes 3 0.0311 55.885 By MS/MS 4 0 1 1 2848000 0 2848000 0 11494 2139 12088 49610 41291 41291 1 0 945140 0 RPDQQLQGEGK PPVALKKEGIRRVGRRPDQQLQGEGKIIDR RVGRRPDQQLQGEGKIIDRRPERRPPRERR R R P G K I 0 1 0 1 0 3 1 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 11 1 1254.6317 Q8NC51 Q8NC51 112 122 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3 0.030427 55.261 By MS/MS By MS/MS 3.83 1.34 1 2 1 1 1 4 2 13684000 0 8732400 4951900 11495 1630 12089 49611;49612;49613;49614;49615;49616 41292;41293;41294;41295 41292 4 0 2787200 917670 RPDSSDDRYVMTK RPGMPPQPQGPAPLRRPDSSDDRYVMTKHA LRRPDSSDDRYVMTKHATIYPTEEELQAVQ R R P T K H 0 2 0 3 0 0 0 0 0 0 0 1 1 0 1 2 1 0 1 1 0 0 13 2 1568.7253 Q96KR1 Q96KR1 718 730 ZFR Zinc finger RNA-binding protein yes yes 3 0.0016112 99.941 By MS/MS 2 0 1 1 3509500 0 3509500 0 11496 1806 12090 49617 41296 41296 1 0 1580400 0 RPEIVVATPGR VGGMSTQKQQRMLNRRPEIVVATPGRLWEL MLNRRPEIVVATPGRLWELIKEKHYHLRNL R R P G R L 1 2 0 0 0 0 1 1 0 1 0 0 0 0 2 0 1 0 0 2 0 0 11 1 1193.6881 Q9GZR7 Q9GZR7 437 447 DDX24 ATP-dependent RNA helicase DDX24 yes yes 2 0.05428 78.342 By MS/MS 2 0 1 1 3702500 0 3702500 0 11497 1952 12091 49618 41297 41297 1 0 1667300 0 RPELEDSTLR PATQVAQVTLQSVQRRPELEDSTLRYLQDL QSVQRRPELEDSTLRYLQDLLAWVEENQHR R R P L R Y 0 2 0 1 0 0 2 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 10 1 1214.6255 Q15149 Q15149 651 660 PLEC Plectin yes yes 2 7.5976E-22 185.33 By MS/MS 1 0 1 1 16526000 0 16526000 0 11498 1348 12092 49619 41298 41298 1 0 8077600 0 RPELLTHSTTEVTQPR EKIIQVGNRIKFVIKRPELLTHSTTEVTQP PELLTHSTTEVTQPRTNTPVKEDWNVRITK K R P P R T 0 2 0 0 0 1 2 0 1 0 2 0 0 0 2 1 4 0 0 1 0 0 16 1 1863.9803 P78347 P78347 540 555 GTF2I General transcription factor II-I yes yes 3;4 6.2219E-06 148.03 By MS/MS By MS/MS 3.58 2.02 1 3 3 2 2 1 5 7 99411000 0 25381000 74030000 11499 1085 12093 49620;49621;49622;49623;49624;49625;49626;49627;49628;49629;49630;49631 41299;41300;41301;41302;41303;41304;41305;41306 41306 8 0 10706000 15302000 RPENSLLEETLHFDHAVR EKKPWQLQGEVTAQKRPENSLLEETLHFDH NSLLEETLHFDHAVRMAPVITEETTLQLED K R P V R M 1 2 1 1 0 0 3 0 2 0 3 0 0 1 1 1 1 0 0 1 0 0 18 1 2162.0869 O00566 O00566 395 412 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 4 0.00020738 85.808 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 1 4 46887000 0 5820400 41067000 11500 129 12094 49632;49633;49634;49635;49636 41307;41308 41308 2 0 2621000 8264200 RPEPVQTLDEAR GSIDSSIRCWDCRSRRPEPVQTLDEARDGV RSRRPEPVQTLDEARDGVSSVKVSDHEILA R R P A R D 1 2 0 1 0 1 2 0 0 0 1 0 0 0 2 0 1 0 0 1 0 0 12 1 1409.7263 Q9BRX9 Q9BRX9 142 153 WDR83 WD repeat domain-containing protein 83 yes yes 2;3 0.0024981 113.38 By MS/MS 5.67 0.471 1 2 3 11635000 0 0 11635000 11501 1894 12095 49637;49638;49639 41309;41310 41310 2 0 0 1717600 RPEVDPLPFPGPFPAGPLAVAGGPR VRLDRVRGGRQKYKRRPEVDPLPFPGPFPA GPFPAGPLAVAGGPRKTAAPVNALVSHLLV R R P P R K 3 2 0 1 0 0 1 4 0 0 2 0 0 2 8 0 0 0 0 2 0 0 25 1 2510.3434 P11474 P11474 164 188 ESRRA Steroid hormone receptor ERR1 yes yes 3 0.00080451 47.745 By MS/MS 5 0 1 1 4969000 0 4969000 0 11502 526 12096 49640 41311 41311 1 0 1280900 0 RPFAVTTQSFGSNAEGQHSGFGPQPNPEK KPAPGTGGLKFNIQKRPFAVTTQSFGSNAE EGQHSGFGPQPNPEKVQNHSGSSARGNLSG K R P E K V 2 1 2 0 0 3 2 4 1 0 0 1 0 3 4 3 2 0 0 1 0 0 29 1 3071.4486 Q96PV6 Q96PV6 241 269 LENG8 Leukocyte receptor cluster member 8 yes yes 4 1.0616E-08 73.107 By MS/MS By matching 2.5 0.5 1 1 1 1 10819000 0 4853500 5965600 11503 1821 12097 49641;49642 41312 41312 1 0 2185600 1157000 RPFDPNDR TGMPRRSRFDRPPARRPFDPNDRCYECGEK FDRPPARRPFDPNDRCYECGEKGHYAYDCH R R P D R C 0 2 1 2 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 8 1 1015.4835 Q16629 Q16629 98 105 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2 0.00024818 144.09 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 36587000 0 18078000 18509000 11504 1392 12098 49643;49644;49645 41313;41314 41314 2 0 6257900 2826700 RPGGQHGGDWSWR HIQDGALRLTTEFVKRPGGQHGGDWSWRVT VKRPGGQHGGDWSWRVTVEPQDSGTSALPL K R P W R V 0 2 0 1 0 1 0 4 1 0 0 0 0 0 1 1 0 2 0 0 0 0 13 1 1494.6865 Q13724 Q13724 175 187 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2;3 0.0021795 85.536 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 1 4 25055000 0 7451500 17603000 11505 1266 12099 49646;49647;49648;49649;49650 41315;41316 41315 2 0 3355500 3230000 RPGYGAYDAFK SLFQRTAWVFDDKYKRPGYGAYDAFKHAVS DKYKRPGYGAYDAFKHAVSDPSILDSLDLN K R P F K H 2 1 0 1 0 0 0 2 0 0 0 1 0 1 1 0 0 0 2 0 0 0 11 1 1243.5986 P05198 P05198 144 154 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2;3 3.3964E-08 163.66 By MS/MS By MS/MS 5.67 0.471 2 4 3 3 270640000 0 77528000 193110000 11506 428 12100 49651;49652;49653;49654;49655;49656 41317;41318;41319;41320;41321;41322 41318 6 0 26703000 28659000 RPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHK AFDGIIFQGQSLKIRRPHDYQPLPGMSENP VPGVVSTVVPDSAHKLFIGGLPNYLNDDQV R R P H K L 1 1 1 2 0 1 1 2 2 0 1 1 1 0 6 4 1 0 2 6 0 0 33 1 3558.7566 P26368 P26368 228 260 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 3;4;5 1.7031E-51 142.64 By MS/MS By MS/MS 3.62 1.21 1 1 3 6 1 1 5 8 549370000 0 212020000 337350000 11507 668 12101;12102 49657;49658;49659;49660;49661;49662;49663;49664;49665;49666;49667;49668;49669 41323;41324;41325;41326;41327;41328;41329;41330;41331;41332;41333;41334 41325 298 12 0 69611000 57299000 RPHPQHSQQPPPPQQER QQEQAYLLSLQHDHRRPHPQHSQQPPPPQQ HPQHSQQPPPPQQERSKPSFHAPEPKAHYE R R P E R S 0 2 0 0 0 5 1 0 2 0 0 0 0 0 6 1 0 0 0 0 0 0 17 1 2043.0147 O95819 O95819 530 546 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 yes yes 4 0.020907 37.77 By MS/MS By MS/MS 3 0 2 1 1 897170 0 209460 687710 11508 344 12103 49670;49671 41335;41336 41336 1 0 89293 133380 RPHTPTPGIYMGR ELDGRRIRVDFSITKRPHTPTPGIYMGRPT TKRPHTPTPGIYMGRPTYGSSRRRDYYDRG K R P G R P 0 2 0 0 0 0 0 2 1 1 0 0 1 0 3 0 2 0 1 0 0 0 13 1 1481.7562 P62995 P62995 198 210 TRA2B Transformer-2 protein homolog beta yes yes 2;3 2.5196E-57 230.61 By MS/MS By MS/MS 5.83 0.986 1 4 3 4 3 9 222580000 0 16652000 205930000 11509 1055 12104;12105 49672;49673;49674;49675;49676;49677;49678;49679;49680;49681;49682;49683 41337;41338;41339;41340;41341;41342;41343;41344;41345;41346 41342 510 9 0 5577300 30273000 RPHTPTPGIYMGRPTYGSSR ELDGRRIRVDFSITKRPHTPTPGIYMGRPT TPGIYMGRPTYGSSRRRDYYDRGYDRGYDD K R P S R R 0 3 0 0 0 0 0 3 1 1 0 0 1 0 4 2 3 0 2 0 0 0 20 2 2230.1066 P62995 P62995 198 217 TRA2B Transformer-2 protein homolog beta yes yes 3;4;5 5.6598E-14 129.12 By MS/MS 5.75 0.829 1 1 5 1 8 100730000 0 100730000 0 11510 1055 12106;12107 49684;49685;49686;49687;49688;49689;49690;49691 41347;41348;41349;41350;41351;41352;41353 41348 510 7 0 35215000 0 RPHVFESNPSIR GMAAAAAVATGKKRKRPHVFESNPSIRKRQ KRKRPHVFESNPSIRKRQQTRLLRKLRATL K R P I R K 0 2 1 0 0 0 1 0 1 1 0 0 0 1 2 2 0 0 0 1 0 0 12 1 1437.7477 Q16656 Q16656 93 104 NRF1 Nuclear respiratory factor 1 yes yes 3 0.0041801 82.069 By MS/MS 4 0.816 1 1 1 3 8584300 0 0 8584300 11511 1396 12108 49692;49693;49694 41354 41354 1 0 0 1398200 RPILTIITLEDSSGNLLGR YNYMCNSSCMGGMNRRPILTIITLEDSSGN TIITLEDSSGNLLGRNSFEVRVCACPGRDR R R P G R N 0 2 1 1 0 0 1 2 0 3 4 0 0 0 1 2 2 0 0 0 0 0 19 1 2067.1688 P04637 P04637 249 267 TP53 Cellular tumor antigen p53 yes yes 2;3 0 380.74 By MS/MS By MS/MS 4.33 1.89 1 2 2 3 3 2 1 1 4 11 169620000 0 26886000 142740000 11512 416 12109 49695;49696;49697;49698;49699;49700;49701;49702;49703;49704;49705;49706;49707;49708;49709 41355;41356;41357;41358;41359;41360;41361;41362;41363;41364 41364 10 0 7867200 22748000 RPISADSAIMNPASK QVVIIDMNDPSNPIRRPISADSAIMNPASK RPISADSAIMNPASKVIALKAGKTLQIFNI R R P S K V 3 1 1 1 0 0 0 0 0 2 0 1 1 0 2 3 0 0 0 0 0 0 15 1 1556.7981 Q00610 Q00610 64 78 CLTC Clathrin heavy chain 1 yes yes 2;3 4.4954E-34 208.08 By MS/MS By MS/MS 1.36 0.481 7 4 5 6 242490000 0 58430000 184060000 11513 1125 12110;12111 49710;49711;49712;49713;49714;49715;49716;49717;49718;49719;49720 41365;41366;41367;41368;41369;41370;41371;41372;41373;41374;41375 41373 535 11 0 27528000 39887000 RPKEEEWDPEYTPK GTNTGPNNSNTTFQKRPKEEEWDPEYTPKS KRPKEEEWDPEYTPKSKKYFLHDDRDDGVD K R P P K S 0 1 0 1 0 0 4 0 0 0 0 2 0 0 3 0 1 1 1 0 0 0 14 2 1802.8475 Q9NYF8 Q9NYF8 829 842 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.00081563 98.682 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 20312000 0 5155500 15157000 11514 2097 12112 49721;49722;49723 41376;41377 41377 2 0 2321600 3370000 RPLDDGVGNQLGALVHQR TPLVDPSVYGYGVQKRPLDDGVGNQLGALV DDGVGNQLGALVHQRTVITEEFKVPDKMVG K R P Q R T 1 2 1 2 0 2 0 3 1 0 3 0 0 0 1 0 0 0 0 2 0 0 18 1 1944.029 Q96I24 Q96I24 58 75 FUBP3 Far upstream element-binding protein 3 yes yes 3;4 2.4879E-17 179.9 By MS/MS By MS/MS 3.57 0.728 4 2 1 4 3 147290000 0 92600000 54685000 11515 1797 12113 49724;49725;49726;49727;49728;49729;49730 41378;41379;41380;41381;41382;41383;41384 41380 6 0 32354000 10200000 RPLEATFDLGIPQAVLPPLPK ATAAAMTQSAVKSLKRPLEATFDLGIPQAV FDLGIPQAVLPPLPKRPALEKTNGATAVFN K R P P K R 2 1 0 1 0 1 1 1 0 1 4 1 0 1 5 0 1 0 0 1 0 0 21 1 2271.2991 Q9NR56 Q9NR56 279 299 MBNL1 Muscleblind-like protein 1 yes yes 3 0.062312 25.207 By MS/MS 5.5 0.5 1 1 2 1203900 0 1203900 0 11516 2041 12114 49731;49732 41385 41385 1 0 349220 0 RPLEDGDQPDAK GTSLNSNDYGYGGQKRPLEDGDQPDAKKVA GQKRPLEDGDQPDAKKVAPQNDSFGTQLPP K R P A K K 1 1 0 3 0 1 1 1 0 0 1 1 0 0 2 0 0 0 0 0 0 0 12 1 1339.6368 Q96AE4 Q96AE4 65 76 FUBP1 Far upstream element-binding protein 1 yes yes 2 0.0038499 109.42 By MS/MS 3 0 1 1 1532300 0 0 1532300 11517 1750 12115 49733 41386 41386 1 0 0 297190 RPLEEDFRR PREEDWRRPLEEDWRRPLEEDFRRSPTEDF LEEDWRRPLEEDFRRSPTEDFRQLPEEDFR R R P R R S 0 3 0 1 0 0 2 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 9 2 1216.6313 Q8IXT5 Q8IXT5 629 637 RBM12B RNA-binding protein 12B yes yes 3 0.074142 50.034 By matching By MS/MS 1.5 0.5 1 1 1 1 8895200 2749500 0 6145700 11518 1587 12116 49734;49735 41387 41387 1 2749500 0 1388800 RPLEMEQQQAYRPEMK DTQVIKQENESGYERRPLEMEQQQAYRPEM PLEMEQQQAYRPEMKTEMKQGAPTSFLPPE R R P M K T 1 2 0 0 0 3 3 0 0 0 1 1 2 0 2 0 0 0 1 0 0 0 16 2 2032.9823 Q9BUJ2 Q9BUJ2 127 142 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 3;4 1.895E-06 158.17 By MS/MS By MS/MS 1.88 0.599 2 5 1 2 6 113160000 0 26886000 86271000 11519 1907 12117;12118 49736;49737;49738;49739;49740;49741;49742;49743 41388;41389;41390;41391;41392;41393;41394 41392 679 7 0 12107000 18965000 RPLIDQVVQTALSETQDPEEVSVTVK PELWGSVLLESNPYRRPLIDQVVQTALSET LSETQDPEEVSVTVKAFMTADLPNELIELL R R P V K A 1 1 0 2 0 3 3 0 0 1 2 1 0 0 2 2 3 0 0 5 0 0 26 1 2880.508 Q00610 Q00610 968 993 CLTC Clathrin heavy chain 1 yes yes 3 7.5184E-29 142.28 By matching By MS/MS 1.33 0.471 2 1 1 2 45833000 0 330670 45502000 11520 1125 12119 49744;49745;49746 41395;41396;41397 41397 3 0 161630 10002000 RPLLGLVLTPTR QELDDKSATCKAYPKRPLLGLVLTPTRELA YPKRPLLGLVLTPTRELAVQVKQHIDAVAR K R P T R E 0 2 0 0 0 0 0 1 0 0 4 0 0 0 2 0 2 0 0 1 0 0 12 1 1334.8398 Q9GZR7 Q9GZR7 386 397 DDX24 ATP-dependent RNA helicase DDX24 yes yes 3 0.018831 62.088 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 7463000 0 3127700 4335300 11521 1952 12120 49747;49748;49749;49750 41398;41399 41399 2 0 1336300 979690 RPLLLNSVLLR DLELRLARFEQLISRRPLLLNSVLLRQNPH LISRRPLLLNSVLLRQNPHHVHEWHKRVAL R R P L R Q 0 2 1 0 0 0 0 0 0 0 5 0 0 0 1 1 0 0 0 1 0 0 11 1 1292.8292 Q9HCS7 Q9HCS7 341 351 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2;3 0.00019231 113.27 By MS/MS By MS/MS 2.6 0.49 2 3 3 2 28567000 0 10777000 17790000 11522 2014 12121 49751;49752;49753;49754;49755 41400;41401;41402;41403 41400 4 0 4813700 3450400 RPLQGEWR PPEEDWRRPPEEDFRRPLQGEWRRPPEDDF PPEEDFRRPLQGEWRRPPEDDFRRPPEEDF R R P W R R 0 2 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 8 1 1040.5516 Q8IXT5 Q8IXT5 685 692 RBM12B RNA-binding protein 12B yes yes 2 0.071207 75.761 By MS/MS 2 0 1 1 4068500 0 0 4068500 11523 1587 12122 49756 41404 41404 0 0 0 919390 RPLQVLR AISEYNKATEDEYYRRPLQVLRAREQTFGG ATEDEYYRRPLQVLRAREQTFGGVNYFFDV R R P L R A 0 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 7 1 880.56067 P01036 P01036 66 72 CST4 Cystatin-S yes yes 2 0.00013258 160.77 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 158630000 158630000 0 0 11524 372 12123 49757;49758;49759;49760;49761;49762;49763;49764;49765;49766 41405;41406;41407;41408;41409 41408 5 187210000 0 0 RPLTAATLFK NMWPEGKLSITEVTKRPLTAATLFKNSMIA TEVTKRPLTAATLFKNSMIALVDNLASKEP K R P F K N 2 1 0 0 0 0 0 0 0 0 2 1 0 1 1 0 2 0 0 0 0 0 10 1 1116.6655 O94832 O94832 560 569 MYO1D Unconventional myosin-Id yes yes 2 0.033909 83.358 By MS/MS 2 0.816 1 1 1 3 12245000 0 12245000 0 11525 299 12124 49767;49768;49769 41410 41410 1 0 5525400 0 RPMDGTYGPPAK SQQTTMYQQQQQNYKRPMDGTYGPPAKRHE NYKRPMDGTYGPPAKRHEGEMYSVPYSTGQ K R P A K R 1 1 0 1 0 0 0 2 0 0 0 1 1 0 3 0 1 0 1 0 0 0 12 1 1288.6234 O14497 O14497 1371 1382 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 0.034638 79.659 By MS/MS 1 0 1 1 2592200 0 0 2592200 11526 134 12125 49770 41411 41411 0 0 0 558530 RPMEEDGEEKSPSK VQIPPSTTYAITPMKRPMEEDGEEKSPSKK KRPMEEDGEEKSPSKKKKKIQKKEEKAEPP K R P S K K 0 1 0 1 0 0 4 1 0 0 0 2 1 0 2 2 0 0 0 0 0 0 14 2 1617.7305 Q12906 Q12906 372 385 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 5.4498E-46 225.09 By MS/MS By MS/MS 2.6 0.49 2 3 4 1 18112000 0 16551000 1561300 11527 1211 12126;12127 49771;49772;49773;49774;49775 41412;41413;41414;41415;41416 41413 572 5 0 7375000 302830 RPMSAYMLWLNASR KPVEVKKGKDPNAPKRPMSAYMLWLNASRE KRPMSAYMLWLNASREKIKSDHPGISITDL K R P S R E 2 2 1 0 0 0 0 0 0 0 2 0 2 0 1 2 0 1 1 0 0 0 14 1 1694.8385 Q08945 Q08945 549 562 SSRP1 FACT complex subunit SSRP1 yes yes 3 0.0054018 68.944 By MS/MS 2.5 0.5 1 1 2 12873000 0 12873000 0 11528 1186 12128 49776;49777 41417;41418 41418 2 0 5569200 0 RPMSGEYGPASVPEYEAR REALKILALSQNEPKRPMSGEYGPASVPEY SGEYGPASVPEYEARTEDNQSSEMQLTIDS K R P A R T 2 2 0 0 0 0 3 2 0 0 0 0 1 0 3 2 0 0 2 1 0 0 18 1 1994.9156 Q9Y6X4 Q9Y6X4 275 292 FAM169A Soluble lamin-associated protein of 75 kDa yes yes 3 0.044251 45.347 By MS/MS 2 0 1 1 8701100 0 0 8701100 11529 2319 12129 49778 41419 41419 0 0 0 1966300 RPNKPAELIAK FINAMKEAFETFINKRPNKPAELIAKYVDS FINKRPNKPAELIAKYVDSKLRAGNKEATD K R P A K Y 2 1 1 0 0 0 1 0 0 1 1 2 0 0 2 0 0 0 0 0 0 0 11 2 1235.735 Q13620;Q13619 Q13620 555 565 CUL4B;CUL4A Cullin-4B;Cullin-4A yes no 3 0.009381 78.548 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 2 2 10611000 145800 2953200 7511800 11530 1264 12130 49779;49780;49781;49782;49783 41420;41421 41421 2 145800 1345800 1532700 RPNNLVIGR KSDCSLFMFGSHNKKRPNNLVIGRMYDYHV GSHNKKRPNNLVIGRMYDYHVLDMIELGIE K R P G R M 0 2 2 0 0 0 0 1 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 1 1037.6094 Q9H7B2 Q9H7B2 99 107 RPF2 Ribosome production factor 2 homolog yes yes 2 4.3811E-11 170.87 By MS/MS By MS/MS 6 0 2 1 1 18995000 0 5871600 13124000 11531 1991 12131 49784;49785 41422;41423 41422 2 0 2032600 1963400 RPNPDILDHER KGEEELRRLEAALVKRPNPDILDHERKRRV ALVKRPNPDILDHERKRRVELRCLELEEMM K R P E R K 0 2 1 2 0 0 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 0 11 1 1360.6848 Q9UQ35 Q9UQ35 52 62 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.025866 57.802 By MS/MS 1.5 0.5 1 1 2 12117000 0 0 12117000 11532 2219 12132 49786;49787 41424 41424 1 0 0 2638700 RPNYGEIPVQEHLLR GPISTSKPLTALSDKRPNYGEIPVQEHLLR RPNYGEIPVQEHLLRTSSASRPASLPRVPA K R P L R T 0 2 1 0 0 1 2 1 1 1 2 0 0 0 2 0 0 0 1 1 0 0 15 1 1819.9693 Q69YQ0 Q69YQ0 905 919 SPECC1L Cytospin-A yes yes 3 0.0024869 72.898 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 16934000 0 7053600 9879900 11533 1469 12133 49788;49789;49790 41425;41426 41426 2 0 3138700 2232700 RPPGDIMFLLVQR LRNYFLEEDNYKNIKRPPGDIMFLLVQRFG IKRPPGDIMFLLVQRFGELMRKLWNPRNFK K R P Q R F 0 2 0 1 0 1 0 1 0 1 2 0 1 1 2 0 0 0 0 1 0 0 13 1 1540.8548 Q53GS9 Q53GS9 264 276 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 3 0.071202 50.563 By MS/MS 3 0 1 1 714520 0 714520 0 11534 1426 12134 49791 41427 41427 0 0 304600 0 RPPSAFFLFCSEHR KGDKKGKKKDPNAPKRPPSAFFLFCSEHRP KRPPSAFFLFCSEHRPKIKSEHPGLSIGDT K R P H R P 1 2 0 0 1 0 1 0 1 0 1 0 0 3 2 2 0 0 0 0 0 0 14 1 1749.8409 P26583 P26583 97 110 HMGB2 High mobility group protein B2 yes yes 3 0.00076329 89.624 By MS/MS 6.5 0.5 1 1 2 4882500 0 0 4882500 11535 670 12135 49792;49793 41428 41428 1 0 0 809150 RPPSAFFLFCSEHRPK KGDKKGKKKDPNAPKRPPSAFFLFCSEHRP PPSAFFLFCSEHRPKIKSEHPGLSIGDTAK K R P P K I 1 2 0 0 1 0 1 0 1 0 1 1 0 3 3 2 0 0 0 0 0 0 16 2 1974.9887 P26583 P26583 97 112 HMGB2 High mobility group protein B2 yes yes 4 0.00041494 91.657 By matching By MS/MS 6.33 0.471 2 1 1 2 36073000 0 961640 35111000 11536 670 12136 49794;49795;49796 41429;41430 41429 2 0 332890 5902500 RPPSAFFLFCSEYRPK KGETKKKFKDPNAPKRPPSAFFLFCSEYRP PPSAFFLFCSEYRPKIKGEHPGLSIGDVAK K R P P K I 1 2 0 0 1 0 1 0 0 0 1 1 0 3 3 2 0 0 1 0 0 0 16 2 2000.9931 P09429 P09429 97 112 HMGB1 High mobility group protein B1 yes yes 2;3;4 1.5134E-24 204.17 By matching By matching By MS/MS 5.67 0.471 2 4 1 1 4 79413000 1988700 1609900 75814000 11537 484 12137 49797;49798;49799;49800;49801;49802 41431;41432;41433 41432 3 1593200 557300 11129000 RPPTMTVSEASYQSER RRRMYSFDDVLEEGKRPPTMTVSEASYQSE PPTMTVSEASYQSERVEEKGATYPSEIPKE K R P E R V 1 2 0 0 0 1 2 0 0 0 0 0 1 0 2 3 2 0 1 1 0 0 16 1 1837.8629 Q8WWI1 Q8WWI1 815 830 LMO7 LIM domain only protein 7 yes yes 3 0.057868 31.883 By MS/MS 2 0 1 1 11823000 0 0 11823000 11538 1687 12138 49803 41434 41434 1 0 0 2671800 RPQDTQYYSPFSSFPR SSIMDELFQDRFFLRRPQDTQYYSPFSSFP PQDTQYYSPFSSFPRGSLFFNPKSRFARNV R R P P R G 0 2 0 1 0 2 0 0 0 0 0 0 0 2 3 3 1 0 2 0 0 0 16 1 1974.9224 CON__P17697 CON__P17697 193 208 yes yes 2;3 5.6585E-47 236.75 By matching By MS/MS 6 0 3 1 2 21907000 6046500 0 15860000 + 11539 60 12139 49804;49805;49806 41435;41436 41436 2 8051000 0 2372900 RPQYRPQYR PATDRQFSGARNQLRRPQYRPQYRQRRFPP ARNQLRRPQYRPQYRQRRFPPYHVGQTFDR R R P Y R Q 0 3 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 9 2 1262.6632 P16989 P16989 225 233 YBX3 Y-box-binding protein 3 yes yes 3 1.1689E-07 156.51 By MS/MS By MS/MS 4 2 1 1 1 1 1 1 1 6 1 10382000 0 7450200 2931400 11540 581 12140 49807;49808;49809;49810;49811;49812;49813 41437;41438;41439 41438 3 0 3335400 478800 RPQYSNPPVQGEVMEGADNQGAGEQGR RRRFPPYYMRRPYGRRPQYSNPPVQGEVME VMEGADNQGAGEQGRPVRQNMYRGYRPRFR R R P G R P 2 2 2 1 0 4 3 5 0 0 0 0 1 0 3 1 0 0 1 2 0 0 27 1 2870.3002 P67809 P67809 205 231 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 3 1.8414E-113 243.23 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 80421000 0 26653000 53769000 11541 1072 12141;12142 49814;49815;49816;49817 41440;41441;41442;41443 41442 516 4 0 6870200 7784700 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR RRRFPPYYMRRPYGRRPQYSNPPVQGEVME GADNQGAGEQGRPVRQNMYRGYRPRFRRGP R R P V R Q 2 3 2 1 0 4 3 5 0 0 0 0 1 0 4 1 0 0 1 3 0 0 30 2 3222.5225 P67809 P67809 205 234 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 3;4;5 7.9284E-283 315.25 By MS/MS By MS/MS 4.17 1.31 1 2 3 6 8 3 12 11 958150000 0 492200000 465960000 11542 1072 12143;12144 49818;49819;49820;49821;49822;49823;49824;49825;49826;49827;49828;49829;49830;49831;49832;49833;49834;49835;49836;49837;49838;49839;49840 41444;41445;41446;41447;41448;41449;41450;41451;41452;41453;41454;41455;41456;41457;41458;41459;41460;41461;41462;41463;41464;41465;41466 41458 516 23 0 137440000 68892000 RPRPPNAPSQDGK PSVRRGYRRPYNYRRRPRPPNAPSQDGKEA RRRPRPPNAPSQDGKEAKAGEAPTENPAPP R R P G K E 1 2 1 1 0 1 0 1 0 0 0 1 0 0 4 1 0 0 0 0 0 0 13 2 1418.7379 P16989 P16989 338 350 YBX3 Y-box-binding protein 3 yes yes 3 0.055076 51.726 By MS/MS By MS/MS 5.14 1.46 1 2 1 1 2 5 2 4121100 0 3025600 1095400 11543 581 12145 49841;49842;49843;49844;49845;49846;49847 41467;41468 41468 2 0 1053000 182630 RPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYR ______________________________ VGYNPYSHLAYNNYRLGGNPGTNSRVTASS K R P Y R L 4 2 3 0 0 1 0 2 1 0 1 0 1 1 9 3 3 0 5 1 0 0 37 1 4078.9425 Q969G3 Q969G3 4 40 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 4 2.7134E-58 131.16 By MS/MS By MS/MS 4 0 2 1 1 18761000 0 12132000 6628900 11544 1741 12146 49848;49849 41469;41470 41470 2 0 4026300 1082700 RPTDYFAEMAK LAVLPRLHQLKVPTKRPTDYFAEMAKSDLQ VPTKRPTDYFAEMAKSDLQMQKIRQKLQTK K R P A K S 2 1 0 1 0 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 0 0 11 1 1327.6231 Q99848 Q99848 132 142 EBNA1BP2 Probable rRNA-processing protein EBP2 yes yes 2 3.6157E-09 164.66 By MS/MS By MS/MS 5.5 0.957 1 2 2 1 3 3 158540000 0 44662000 113880000 11545 1866 12147 49850;49851;49852;49853;49854;49855 41471;41472;41473;41474;41475 41473 5 0 13027000 16309000 RPTGDFGFSLR VPLPPPTLRELELQRRPTGDFGFSLRRTTM ELQRRPTGDFGFSLRRTTMLDRGPEGQACR R R P L R R 0 2 0 1 0 0 0 2 0 0 1 0 0 2 1 1 1 0 0 0 0 0 11 1 1251.636 Q92614 Q92614 226 236 MYO18A Unconventional myosin-XVIIIa yes yes 3 0.050098 45.28 By MS/MS 1 0 1 1 1813600 0 1813600 0 11546 1710 12148 49856 41476 41476 1 0 886450 0 RPVHGESDTEQLQDDDIETTK QTYELMRCLEDLTSRRPVHGESDTEQLQDD SDTEQLQDDDIETTKVEMLRLSLARNLARA R R P T K V 0 1 0 4 0 2 3 1 1 1 1 1 0 0 1 1 3 0 0 1 0 0 21 1 2412.1041 Q9BW27 Q9BW27 611 631 NUP85 Nuclear pore complex protein Nup85 yes yes 3;4 2.466E-14 138.04 By MS/MS 3 0 2 2 14586000 0 0 14586000 11547 1920 12149 49857;49858 41477;41478 41478 2 0 0 2829000 RPVHLDQAAFR NGRQWKPQLGFNRDRRPVHLDQAAFRTLGH NRDRRPVHLDQAAFRTLGHVMPRGSGTGIY R R P F R T 2 2 0 1 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 11 1 1308.7051 Q9H0D6 Q9H0D6 806 816 XRN2 5-3 exoribonuclease 2 yes yes 3 0.0044833 80.979 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 23384000 0 5905200 17479000 11548 1960 12150 49859;49860;49861;49862 41479;41480;41481 41479 3 0 2659200 3685400 RPVQAWVESLR EPVLRKVELPVPTHRRPVQAWVESLRGFEQ PTHRRPVQAWVESLRGFEQERVGLADLHPD R R P L R G 1 2 0 0 0 1 1 0 0 0 1 0 0 0 1 1 0 1 0 2 0 0 11 1 1339.7361 Q9BYD3 Q9BYD3 60 70 MRPL4 39S ribosomal protein L4, mitochondrial yes yes 2;3 6.2285E-05 147.3 By MS/MS By MS/MS 6 0 4 2 2 14692000 0 3331100 11361000 11549 1935 12151 49863;49864;49865;49866 41482;41483 41483 2 0 1153100 1699800 RPVSAMFIFSEEK KPAQEGGKGGSEKPKRPVSAMFIFSEEKRR PKRPVSAMFIFSEEKRRQLQEERPELSESE K R P E K R 1 1 0 0 0 0 2 0 0 1 0 1 1 2 1 2 0 0 0 1 0 0 13 1 1539.7755 P17480 P17480 409 421 UBTF Nucleolar transcription factor 1 yes yes 2;3 0.00050387 145.08 By MS/MS By MS/MS 2.4 0.49 3 2 1 4 81769000 0 5329900 76439000 11550 584 12152 49867;49868;49869;49870;49871 41484;41485;41486;41487 41487 4 0 2400100 16568000 RPYAPINANAIK RRMCRDLLQPRRAARRPYAPINANAIKAEC AARRPYAPINANAIKAECSIRLPKAAKTPL R R P I K A 3 1 2 0 0 0 0 0 0 2 0 1 0 0 2 0 0 0 1 0 0 0 12 1 1326.7408 O94776 O94776 481 492 MTA2 Metastasis-associated protein MTA2 yes yes 2;3 3.8455E-05 152.38 By MS/MS By MS/MS 3.25 0.433 3 1 2 2 27602000 0 11619000 15984000 11551 298 12153 49872;49873;49874;49875 41488;41489;41490;41491 41488 3 0 4745500 3100100 RPYDLDR QQELRYEQERRPAVRRPYDLDRRDDAYWPE QERRPAVRRPYDLDRRDDAYWPEAKRAALD R R P D R R 0 2 0 2 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 7 1 933.46683 Q14151;Q15424 Q15424 712 718 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2 0.00037326 155 By MS/MS By MS/MS 2.83 1.34 1 2 1 1 1 2 4 31105000 0 17973000 13131000 11552 1364;1285 12154 49876;49877;49878;49879;49880;49881 41492;41493 41492 2 0 8160900 2549300 RPYLPGQLPPPPLYR LISCFTPSESQRFSRRPYLPGQLPPPPLYR RPYLPGQLPPPPLYRPRWVPPSPPPPYDSR R R P Y R P 0 2 0 0 0 1 0 1 0 0 3 0 0 0 6 0 0 0 2 0 0 0 15 1 1762.9883 Q99935 Q99935 27 41 PROL1 Proline-rich protein 1;Opiorphin yes yes 3 0.010213 57.425 By MS/MS 7 2 1 1 1 1 1 1 1 7 22767000 22767000 0 0 11553 1869 12155 49882;49883;49884;49885;49886;49887;49888 41494 41494 1 25405000 0 0 RPYLPGQLPPPPLYRPR LISCFTPSESQRFSRRPYLPGQLPPPPLYR YLPGQLPPPPLYRPRWVPPSPPPPYDSRLN R R P P R W 0 3 0 0 0 1 0 1 0 0 3 0 0 0 7 0 0 0 2 0 0 0 17 2 2016.1421 Q99935 Q99935 27 43 PROL1 Proline-rich protein 1;Opiorphin yes yes 3;4 0.00028562 94.09 By MS/MS 6.4 4.03 1 1 1 2 5 23425000 23425000 0 0 11554 1869 12156 49889;49890;49891;49892;49893 41495;41496;41497;41498;41499 41497 4 26199000 0 0 RQAQQERDELADEIANSSGK MIQLQEELAAAERAKRQAQQERDELADEIA ERDELADEIANSSGKGALALEEKRRLEARI K R Q G K G 3 2 1 2 0 3 3 1 0 1 1 1 0 0 0 2 0 0 0 0 0 0 20 2 2244.0731 P35579 P35579 1697 1716 MYH9 Myosin-9 yes yes 3;4 8.4513E-08 105.32 By MS/MS 1 0 2 2 19149000 0 19149000 0 11555 752 12157 49894;49895 41500;41501;41502 41501 3 0 9359800 0 RQATTIIADNIIFLSDQTK GKIDYGEYMDKNNVRRQATTIIADNIIFLS TIIADNIIFLSDQTKEKE____________ R R Q T K E 2 1 1 2 0 2 0 0 0 4 1 1 0 1 0 1 3 0 0 0 0 0 19 1 2147.1586 Q04837 Q04837 127 145 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 3 1.2184E-06 105.79 By MS/MS By MS/MS 8.33 0.471 2 1 1 2 22257000 0 3720100 18536000 11556 1161 12158 49896;49897;49898 41503;41504 41504 2 0 1692500 3675400 RQAVDVSPLR PREDSTRIGRAGTVRRQAVDVSPLRRVNQA AGTVRRQAVDVSPLRRVNQAIWLLCTGARE R R Q L R R 1 2 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 10 1 1139.6411 P46782 P46782 136 145 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 0.00021998 144.65 By MS/MS By MS/MS 7 0 2 1 1 221220000 0 0 221220000 11557 832 12159 49899;49900 41505;41506 41506 2 0 0 39254000 RQAVDVSPLRR PREDSTRIGRAGTVRRQAVDVSPLRRVNQA GTVRRQAVDVSPLRRVNQAIWLLCTGAREA R R Q R R V 1 3 0 1 0 1 0 0 0 0 1 0 0 0 1 1 0 0 0 2 0 0 11 2 1295.7422 P46782 P46782 136 146 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 3 0.00064573 108.77 By MS/MS By matching 7.33 0.471 2 1 1 2 37305000 0 31897000 5408100 11558 832 12160 49901;49902;49903 41507 41507 1 0 18315000 946030 RQDDIKDESSEFSSHSNK IHQLYKQRASRLVQRRQDDIKDESSEFSSH DIKDESSEFSSHSNKALMAPNLDSFGRDRA R R Q N K A 0 1 1 3 0 1 2 0 1 1 0 2 0 1 0 5 0 0 0 0 0 0 18 2 2107.9407 Q9Y5B6 Q9Y5B6 487 504 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 4 0.016741 46.663 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 5860100 0 1766600 4093500 11559 2295 12161 49904;49905;49906 41508;41509 41509 2 0 795530 906970 RQDLEDSLQAQQYFADANEAESWMR LNQKWEALKAKASQRRQDLEDSLQAQQYFA QQYFADANEAESWMREKEPIVGSTDYGKDE R R Q M R E 4 2 1 3 0 4 3 0 0 0 2 0 1 1 0 2 0 1 1 0 0 0 25 1 3000.3308 Q13813 Q13813 883 907 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 6.3075E-34 173.89 By MS/MS 1.5 0.5 1 1 2 12932000 0 0 12932000 11560 1268 12162 49907;49908 41510 41510 1 0 0 2831000 RQDLLSR SVWELLFYREVSEDRRQDLLSRYRAGTLTV YREVSEDRRQDLLSRYRAGTLTVEELGATL R R Q S R Y 0 2 0 1 0 1 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 7 1 886.49846 P58107 P58107 2468 2474 EPPK1 Epiplakin yes no 2 0.016591 121.67 By MS/MS 1 0 1 1 8234400 0 8234400 0 11561 958 12163 49909 41511 41511 1 0 4024900 0 RQDSLESMK DNYQAFCKWLYDAKRRQDSLESMKFGDSNT LYDAKRRQDSLESMKFGDSNTVMRFLNEQK R R Q M K F 0 1 0 1 0 1 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 9 1 1092.5234 P15924 P15924 908 916 DSP Desmoplakin yes yes 2 0.00077677 123.35 By MS/MS By MS/MS 3.25 3.34 2 1 1 3 1 7307500 5269000 2038500 0 11562 572 12164 49910;49911;49912;49913 41512;41513;41514;41515 41512 4 4469500 996410 0 RQEEEAGALEAGEEAR RELQTAQAQLSEWRRRQEEEAGALEAGEEA QEEEAGALEAGEEARRRAAREAEALTQRLA R R Q A R R 4 2 0 0 0 1 6 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 16 1 1743.8024 Q7Z406 Q7Z406 1396 1411 MYH14 Myosin-14 yes yes 3 0.070014 27.271 By MS/MS 1 0 1 1 3713800 0 0 3713800 11563 1531 12165 49914 41516 41516 1 0 0 800190 RQELEAELAK ELARLQREAAAATQKRQELEAELAKVRAEM AATQKRQELEAELAKVRAEMEVLLASKARA K R Q A K V 2 1 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 10 1 1185.6354 Q15149 Q15149 1887 1896 PLEC Plectin yes yes 2 0.040143 81.338 By MS/MS 1 0 1 1 20370000 0 20370000 0 11564 1348 12166 49915 41517 41517 1 0 9956700 0 RQELEQVLGIR QEAVGRHIFAKVQQRRQELEQVLGIRLT__ VQQRRQELEQVLGIRLT_____________ R R Q I R L 0 2 0 0 0 2 2 1 0 1 2 0 0 0 0 0 0 0 0 1 0 0 11 1 1339.7572 Q92925 Q92925 519 529 SMARCD2 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 yes yes 2 3.4293E-09 165.18 By MS/MS 3 0 1 1 4806700 0 0 4806700 11565 1732 12167 49916 41518 41518 1 0 0 932270 RQEQIQAMPLADSQAVR ESADPLGAWLQDARRRQEQIQAMPLADSQA EQIQAMPLADSQAVREQLRQEQALLEEIER R R Q V R E 3 2 0 1 0 4 1 0 0 1 1 0 1 0 1 1 0 0 0 1 0 0 17 1 1939.9898 Q15149 Q15149 1366 1382 PLEC Plectin yes yes 3 0.0016146 68.27 By MS/MS 1 0 2 2 17061000 0 17061000 0 11566 1348 12168;12169 49917;49918 41519;41520 41520 605 2 0 8339200 0 RQESQQNSDQNSNLNPHVIR DARKLHKLYKHAIKKRQESQQNSDQNSNLN QNSDQNSNLNPHVIRNPDVERLKENTNHDD K R Q I R N 0 2 4 1 0 4 1 0 1 1 1 0 0 0 1 3 0 0 0 1 0 0 20 1 2363.1326 O14646 O14646 1504 1523 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 4 4.6647E-06 89.049 By MS/MS 1 0 1 1 5163300 0 5163300 0 11567 141 12170 49919 41521 41521 1 0 2523700 0 RQIQAAYSILSEVQQAVSQGSSDSQILDLSNR YEIDLQKMPLGKLSKRQIQAAYSILSEVQQ SQGSSDSQILDLSNRFYTLIPHDFGMKKPP K R Q N R F 3 2 1 2 0 6 1 1 0 3 3 0 0 0 0 7 0 0 1 2 0 0 32 1 3490.7652 P09874 P09874 704 735 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3;4 1.5592E-144 258.65 By MS/MS 1.8 0.748 2 2 1 5 36947000 0 0 36947000 11568 492 12171 49920;49921;49922;49923;49924 41522;41523 41522 2 0 0 8126000 RQLDSIVGER QNLEPLFEQYINNLRRQLDSIVGERGRLDS INNLRRQLDSIVGERGRLDSELRNMQDLVE R R Q E R G 0 2 0 1 0 1 1 1 0 1 1 0 0 0 0 1 0 0 0 1 0 0 10 1 1171.6309 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668 CON__P48668 223 232 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 0.0010353 133.76 By MS/MS 9 0 1 1 10514000 10514000 0 0 + 11569 68;37;47;58 12172 49925 41524 41524 1 5901600 0 0 RQLEEAEEEAQR KDQADKASTRLKQLKRQLEEAEEEAQRANA QLKRQLEEAEEEAQRANASRRKLQRELEDA K R Q Q R A 2 2 0 0 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 12 1 1486.7012 P35579 P35579 1877 1888 MYH9 Myosin-9 yes yes 2;3 0.00016273 118.88 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 14982000 0 9687000 5294700 11570 752 12173 49926;49927;49928;49929 41525;41526;41527 41527 3 0 4734900 1147900 RQLETLGQEK SNMDNMFESYINNLRRQLETLGQEKLKLEA INNLRRQLETLGQEKLKLEAELGNMQGLVE R R Q E K L 0 1 0 0 0 2 2 1 0 0 2 1 0 0 0 0 1 0 0 0 0 0 10 1 1200.6463 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 149 158 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 3.6029E-29 196.07 By MS/MS By MS/MS 4.17 0.687 1 3 2 3 3 43949000 0 12726000 31222000 + 11571 49 12174 49930;49931;49932;49933;49934;49935 41528;41529;41530;41531;41532;41533 41532 5 0 3920300 5292600 RQPEAVHLLDK PYKDIWHKVGNALWRRQPEAVHLLDKILKK ALWRRQPEAVHLLDKILKKHKPDFISLFKN R R Q D K I 1 1 0 1 0 1 1 0 1 0 2 1 0 0 1 0 0 0 0 1 0 0 11 1 1304.7201 Q92621 Q92621 31 41 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.01478 66.498 By MS/MS 1 0 1 1 14035000 0 0 14035000 11572 1714 12175 49936 41534 41534 1 0 0 3024000 RQQEELLAEENQR VRRKQEELQQLEQQRRQQEELLAEENQRLR QRRQQEELLAEENQRLREQLQLLEEQHRAA R R Q Q R L 1 2 1 0 0 3 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 13 1 1641.8071 Q15149 Q15149 2718 2730 PLEC Plectin yes yes 3 0.010773 66.285 By MS/MS By MS/MS 1 0 2 1 1 19628000 0 11254000 8374900 11573 1348 12176 49937;49938 41535;41536 41535 2 0 5500600 1804500 RQQEEMMR LRQEEERRRREEEMRRQQEEMMRRQQEGFK RREEEMRRQQEEMMRRQQEGFKGTFPDARE R R Q M R R 0 2 0 0 0 2 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 8 1 1106.4961 Q15233 Q15233 357 364 NONO Non-POU domain-containing octamer-binding protein yes yes 2 3.3256E-13 175.44 By MS/MS 3.5 0.5 1 1 2 2289600 0 0 2289600 11574 1351 12177 49939;49940 41537;41538 41537 2 0 0 430610 RQQEGFKPNYMENR REEEMIRHREQEELRRQQEGFKPNYMENRE RRQQEGFKPNYMENREQEMRMGDMGPRGAI R R Q N R E 0 2 2 0 0 2 2 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 14 2 1795.8424 Q8WXF1 Q8WXF1 374 387 PSPC1 Paraspeckle component 1 yes yes 3 0.022581 59.864 By MS/MS 3 0 1 1 6207500 0 0 6207500 11575 1695 12178 49941 41539 41539 1 0 0 1204000 RQQEVETELK REERMERKRREKIERRQQEVETELKMWDPH EKIERRQQEVETELKMWDPHNDPNAQGDAF R R Q L K M 0 1 0 0 0 2 3 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1258.6517 P08621 P08621 78 87 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2;3 0.00013646 147.95 By MS/MS By MS/MS 3.71 0.881 1 1 4 1 4 3 20294000 0 5010000 15284000 11576 474 12179 49942;49943;49944;49945;49946;49947;49948 41540;41541;41542;41543;41544 41542 5 0 1721000 2709400 RQQQLTAMK QACCRGYLARKAFAKRQQQLTAMKVLQRNC RKAFAKRQQQLTAMKVLQRNCAAYLKLRNW K R Q M K V 1 1 0 0 0 3 0 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 9 1 1102.5917 P35579 P35579 802 810 MYH9 Myosin-9 no no 2 0.012282 93.429 By MS/MS 1.5 0.5 1 1 2 5038900 0 5038900 0 11577 752 12180 49949;49950 41545 41545 1 0 2436000 0 RQTMLFSATQTR FEEELKQIIKLLPTRRQTMLFSATQTRKVE PTRRQTMLFSATQTRKVEDLARISLKKEPL R R Q T R K 1 2 0 0 0 2 0 0 0 0 1 0 1 1 0 1 3 0 0 0 0 0 12 1 1438.7351 Q9NVP1 Q9NVP1 358 369 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.0214 90.793 By MS/MS 3 0 1 1 5616100 0 0 5616100 11578 2069 12181 49951 41546 41546 1 0 0 1089200 RQVDQLTNDK SRLGDLYEEEMRELRRQVDQLTNDKARVEV MRELRRQVDQLTNDKARVEVERDNLAEDIM R R Q D K A 0 1 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 10 1 1215.6208 P08670 P08670 159 168 VIM Vimentin yes yes 2;3 2.6421E-22 192.26 By MS/MS By MS/MS 3.33 1.18 1 2 3 4 2 4 8 24142000 0 7537400 16605000 11579 476 12182 49952;49953;49954;49955;49956;49957;49958;49959;49960;49961;49962;49963 41547;41548;41549;41550;41551;41552;41553 41551 7 0 2347700 2948300 RQVDQLTNDKAR SRLGDLYEEEMRELRRQVDQLTNDKARVEV ELRRQVDQLTNDKARVEVERDNLAEDIMRL R R Q A R V 1 2 1 2 0 2 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 12 2 1442.759 P08670 P08670 159 170 VIM Vimentin yes yes 3 0.066955 50.46 By MS/MS 4 0 1 1 353390 0 353390 0 11580 476 12183 49964 41554 41554 1 0 117280 0 RQVQSLTCEVDALK NDALRQAKQESTEYRRQVQSLTCEVDALKG RRQVQSLTCEVDALKGTNESLERQMREMEE R R Q L K G 1 1 0 1 1 2 1 0 0 0 2 1 0 0 0 1 1 0 0 2 0 0 14 1 1645.8458 P08670 P08670 321 334 VIM Vimentin yes yes 2 2.8708E-05 162.68 By MS/MS 4 0 1 1 6637000 0 0 6637000 11581 476 12184 49965 41555 41555 1 0 0 1084000 RREEEGLQLR KSYKNKSLNPDEMRRRREEEGLQLRKQKRE DEMRRRREEEGLQLRKQKREEQLFKRRNVA R R R L R K 0 3 0 0 0 1 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 10 2 1284.6898 P52294 P52294 27 36 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 3 9.1358E-05 123.67 By MS/MS 3.5 0.5 1 1 2 16523000 0 0 16523000 11582 904 12185 49966;49967 41556 41556 1 0 0 3047700 RREEEMMIR QKRKEMQLRQEEERRRREEEMMIRQREMEE QEEERRRREEEMMIRQREMEEQMRRQREES R R R I R Q 0 3 0 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 9 2 1248.6067 P23246 P23246 573 581 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 2.0951E-05 146.11 By MS/MS By MS/MS 3.36 1.63 2 3 3 2 2 2 3 11 292250000 0 82240000 210010000 11583 638 12186 49968;49969;49970;49971;49972;49973;49974;49975;49976;49977;49978;49979;49980;49981 41557;41558;41559;41560;41561;41562;41563 41557 7 0 36903000 42152000 RREELFIEQK ETVRRDKTLLKEKRKRREELFIEQKKRKLL KEKRKRREELFIEQKKRKLLPDTILEKLTT K R R Q K K 0 2 0 0 0 1 3 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 10 2 1346.7306 Q9UMY1 Q9UMY1 100 109 NOL7 Nucleolar protein 7 yes yes 3 0.041851 59.542 By MS/MS By MS/MS 6 0 2 1 1 15804000 0 2691800 13112000 11584 2200 12187 49982;49983 41564;41565 41565 1 0 931790 1961700 RRPEDYDIHNSR RGRPSRREPVRDVGRRRPEDYDIHNSRKKP VGRRRPEDYDIHNSRKKPRIDYPPEFHQRP R R R S R K 0 3 1 2 0 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 0 12 2 1556.7444 Q96MU7 Q96MU7 535 546 YTHDC1 YTH domain-containing protein 1 yes yes 3 0.0056675 80.96 By MS/MS 3 0 1 1 0 0 0 0 11585 1813 12188 49984 41566 41566 1 0 0 0 RRPTLGVQLDDK DESDSDAEEEQTTKRRRPTLGVQLDDKRKE TKRRRPTLGVQLDDKRKEMLKRHPLSVMLD R R R D K R 0 2 0 2 0 1 0 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 12 2 1396.7787 Q13769 Q13769 325 336 THOC5 THO complex subunit 5 homolog yes yes 3 0.01514 73.466 By matching By MS/MS By MS/MS 2.5 0.5 2 2 1 1 2 19481000 2963300 2207200 14310000 11586 1267 12189 49985;49986;49987;49988 41567;41568 41568 2 3570400 940920 2853500 RRTEEGPTLSYGR ITPENLPQILLQLKRRRTEEGPTLSYGRDG KRRRTEEGPTLSYGRDGRSATREPPYRVPR R R R G R D 0 3 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 13 2 1520.7696 P43243 P43243 148 160 MATR3 Matrin-3 yes yes 3 1.7648E-17 186.56 By MS/MS 2 0 1 1 9270300 0 9270300 0 11587 812 12190 49989 41569 41569 1 0 4174500 0 RSDTSLTWNSVK VDRPVEGYLAVAVVRRSDTSLTWNSVKGKK VVRRSDTSLTWNSVKGKKSCHTAVDRTAGW R R S V K G 0 1 1 1 0 0 0 0 0 0 1 1 0 0 0 3 2 1 0 1 0 0 12 1 1392.6997 P02788 P02788 462 473 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2;3 1.6772E-16 174.42 By MS/MS By matching By matching 5.45 2.91 2 2 3 1 2 2 2 2 2 2 18 1 1 184120000 172400000 5138500 6577800 11588 400 12191 49990;49991;49992;49993;49994;49995;49996;49997;49998;49999;50000;50001;50002;50003;50004;50005;50006;50007;50008;50009 41570;41571;41572;41573;41574;41575;41576;41577;41578;41579;41580;41581 41577 12 203270000 2190500 1275800 RSLIAEVLVK KLGVKRCTDQMSLQKRSLIAEVLVKILKKC MSLQKRSLIAEVLVKILKKCSV________ K R S V K I 1 1 0 0 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 10 1 1126.7074 O95969 O95969 74 83 SCGB1D2 Secretoglobin family 1D member 2 yes yes 2 0.0010792 115.71 By MS/MS 9 0.816 1 1 1 3 17714000 17714000 0 0 11589 350 12192 50010;50011;50012 41582 41582 1 20170000 0 0 RSPHFFQPTNQQFK NNSNYGWRALRLLARRSPHFFQPTNQQFKS RRSPHFFQPTNQQFKSLPEYLENMVIKLAK R R S F K S 0 1 1 0 0 3 0 0 1 0 0 1 0 3 2 1 1 0 0 0 0 0 14 1 1760.8747 Q96FV9 Q96FV9 503 516 THOC1 THO complex subunit 1 yes yes 3 0.065166 35.182 By MS/MS 3 0 1 1 4792000 0 4792000 0 11590 1783 12193 50013 41583 41583 1 0 2042800 0 RSTSSFSCLSR RGFSSGSAVVSGGSRRSTSSFSCLSRHGGG GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS R R S S R H 0 2 0 0 1 0 0 0 0 0 1 0 0 1 0 5 1 0 0 0 0 0 11 1 1286.6037 CON__P35908;CON__P35908v2;P35908 CON__P35908 35 45 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00057226 121.96 By MS/MS By MS/MS 1 0 2 1 1 10720000 7282300 0 3437700 + 11591 65;66 12194 50014;50015 41584;41585 41585 2 7282300 0 740710 RTAQEVETYR KFEKNFYQEHPDLARRTAQEVETYRRSKEI PDLARRTAQEVETYRRSKEITVRGHNCPKP R R T Y R R 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 P17844 P17844 68 77 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2;3 0.00043321 122.69 By MS/MS By MS/MS 3.43 0.495 4 3 3 4 26595000 0 10906000 15689000 11592 588 12195 50016;50017;50018;50019;50020;50021;50022 41586;41587;41588;41589;41590 41589 5 0 4517300 2991600 RTAQEVETYRR KFEKNFYQEHPDLARRTAQEVETYRRSKEI DLARRTAQEVETYRRSKEITVRGHNCPKPV R R T R R S 1 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 11 2 1407.7219 P17844 P17844 68 78 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 3 0.00017715 118.77 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 4 2 14082000 0 8083300 5998700 11593 588 12196 50023;50024;50025;50026;50027;50028 41591;41592;41593 41593 3 0 3178800 1157200 RTDEEGKDVPDHAVLEMK VICPTDEDLKDRTIKRTDEEGKDVPDHAVL EEGKDVPDHAVLEMKANFTLPDVGDFLDEV K R T M K A 1 1 0 3 0 0 3 1 1 0 1 2 1 0 1 0 1 0 0 2 0 0 18 2 2067.9895 Q9BUJ2 Q9BUJ2 545 562 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 4 9.9701E-05 96.143 By matching By MS/MS 2.25 0.433 3 1 1 3 48405000 0 5865300 42540000 11594 1907 12197;12198 50029;50030;50031;50032 41594;41595;41596 41595 3 0 2641200 9258400 RTDIFGVEETAIGK PGLDIESSLKQLAERRTDIFGVEETAIGKK RRTDIFGVEETAIGKKIGEEEIQKPEEKVT R R T G K K 1 1 0 1 0 0 2 2 0 2 0 1 0 1 0 0 2 0 0 1 0 0 14 1 1534.7991 Q15459 Q15459 473 486 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.00065861 130.16 By MS/MS 2 0 1 1 8121200 0 0 8121200 11595 1369 12199 50033 41597 41597 1 0 0 1835200 RTDIFGVEETAIGKK PGLDIESSLKQLAERRTDIFGVEETAIGKK RTDIFGVEETAIGKKIGEEEIQKPEEKVTW R R T K K I 1 1 0 1 0 0 2 2 0 2 0 2 0 1 0 0 2 0 0 1 0 0 15 2 1662.8941 Q15459 Q15459 473 487 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.016298 59.15 By matching By MS/MS 1.67 0.471 1 2 2 1 16742000 6573300 0 10169000 11596 1369 12200 50034;50035;50036 41598 41598 1 7592000 0 2298000 RTEEGPTLSYGR TPENLPQILLQLKRRRTEEGPTLSYGRDGR KRRRTEEGPTLSYGRDGRSATREPPYRVPR R R T G R D 0 2 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 12 1 1364.6684 P43243 P43243 149 160 MATR3 Matrin-3 yes yes 2;3 6.9287E-25 196.24 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 52291000 0 24310000 27981000 11597 812 12201 50037;50038;50039;50040;50041 41599;41600;41601;41602 41599 4 0 10947000 6038300 RTEMENEFVLIK LVEDFKNKYEDEINKRTEMENEFVLIKKDV INKRTEMENEFVLIKKDVDEAYMNKVELES K R T I K K 0 1 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 12 1 1507.7705 CON__P05787;P05787;CON__H-INV:HIT000016045 CON__P05787 186 197 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 0.0017117 118.4 By matching By MS/MS By MS/MS 3.43 1.05 2 1 3 1 1 2 4 92880000 873470 4332500 87674000 + 11598 49 12202 50042;50043;50044;50045;50046;50047;50048 41603;41604;41605 41604 3 1052400 1551600 14197000 RTEMENEFVLIKK LVEDFKNKYEDEINKRTEMENEFVLIKKDV NKRTEMENEFVLIKKDVDEAYMNKVELESR K R T K K D 0 1 1 0 0 0 3 0 0 1 1 2 1 1 0 0 1 0 0 1 0 0 13 2 1635.8654 CON__P05787;P05787;CON__H-INV:HIT000016045 CON__P05787 186 198 KRT8 Keratin, type II cytoskeletal 8 yes no 3 0.069606 47.532 By MS/MS 4 0 1 1 7833100 0 7833100 0 + 11599 49 12203 50049 41606 41606 1 0 2599500 0 RTEQEEDEELLTESSK DEKQNLLSVGDYRHRRTEQEEDEELLTESS TEQEEDEELLTESSKATNVCTRFEDSPSYV R R T S K A 0 1 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 16 1 1921.8753 O60264 O60264 145 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 1.5489E-46 222.74 By MS/MS 1.8 0.748 2 2 1 5 35411000 0 0 35411000 11600 223 12204 50050;50051;50052;50053;50054 41607;41608;41609 41608 3 0 0 7769500 RTHLASDDLYK IELEEMGPSLDLVLRRTHLASDDLYKLSMK LVLRRTHLASDDLYKLSMKMPKALKPKKKK R R T Y K L 1 1 0 2 0 0 0 0 1 0 2 1 0 0 0 1 1 0 1 0 0 0 11 1 1317.6677 Q9H7B2 Q9H7B2 227 237 RPF2 Ribosome production factor 2 homolog yes yes 2;3 0.002268 88.101 By matching By MS/MS 6 0 3 1 2 20880000 1107700 0 19772000 11601 1991 12205 50055;50056;50057 41610;41611 41610 2 1474900 0 2958100 RTHLPEVFLSK GNTKVMDKYTFELSRRTHLPEVFLSKVLEP ELSRRTHLPEVFLSKVLEPTLKSLGECCDV R R T S K V 0 1 0 0 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 1 0 0 11 1 1325.7456 P02774 P02774 353 363 GC Vitamin D-binding protein yes yes 3 0.010341 71.548 By MS/MS 9.5 0.5 1 1 2 13153000 13153000 0 0 11602 397 12206 50058;50059 41612 41612 1 8968600 0 0 RTLEGELHDLR LNSKEAALSTALSEKRTLEGELHDLRGQVA LSEKRTLEGELHDLRGQVAKLEAALGEAKK K R T L R G 0 2 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 11 1 1337.7052 P02545 P02545 156 166 LMNA Prelamin-A/C;Lamin-A/C yes yes 3 0.0011007 98.368 By MS/MS 3 0.816 1 1 1 3 33667000 0 0 33667000 11603 387 12207 50060;50061;50062 41613 41613 1 0 0 6430900 RTNAENEFVTIK MVEDYRNKYEDEINKRTNAENEFVTIKKDV INKRTNAENEFVTIKKDVDGAYMTKVDLQA K R T I K K 1 1 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 12 1 1420.731 P04264;CON__P04264 P04264 277 288 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 0.019391 92.611 By MS/MS By matching 1.2 0.4 4 1 2 3 30967000 19225000 0 11742000 + 11604 413 12208 50063;50064;50065;50066;50067 41614;41615 41614 2 19225000 0 2545700 RTNAENEFVTIKK MVEDYRNKYEDEINKRTNAENEFVTIKKDV NKRTNAENEFVTIKKDVDGAYMTKVDLQAK K R T K K D 1 1 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 13 2 1548.826 P04264;CON__P04264 P04264 277 289 KRT1 Keratin, type II cytoskeletal 1 yes no 3 0.00048447 109.95 By MS/MS By MS/MS By MS/MS 5.7 3.29 2 1 1 1 1 1 1 2 7 2 1 151380000 136050000 3804400 11531000 + 11605 413 12209 50068;50069;50070;50071;50072;50073;50074;50075;50076;50077 41616;41617;41618;41619;41620;41621;41622;41623 41619 7 127090000 6924400 2484400 RTNSTFNQVVLK IYLRLLVKLYRFLARRTNSTFNQVVLKRLF LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R R T L K R 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 Q07020 Q07020 38 49 RPL18 60S ribosomal protein L18 yes yes 2 0.0015356 119.53 By MS/MS By MS/MS 7 0 2 1 1 58148000 0 13248000 44900000 11606 1174 12210 50078;50079 41624;41625 41625 2 0 7607000 7967300 RTVAAPSVFIFPPSDEQLK ______________________________ APSVFIFPPSDEQLKSGTASVVCLLNNFYP - R T L K S 2 1 0 1 0 1 1 0 0 1 1 1 0 2 3 2 1 0 0 2 0 0 19 1 2101.1208 P01834 P01834 1 19 IGKC Ig kappa chain C region yes yes 3 0.0013256 64.249 By MS/MS 9 0 1 1 3733000 3733000 0 0 11607 380 12211 50080 41626 41626 1 2095400 0 0 RTVQSLEIDLDSMR SAEVGAAETTLTELRRTVQSLEIDLDSMRN RRTVQSLEIDLDSMRNLKASLENSLREVEA R R T M R N 0 2 0 2 0 1 1 0 0 1 2 0 1 0 0 2 1 0 0 1 0 0 14 1 1661.8407 P05783 P05783 301 314 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 9.2647E-34 208.82 By MS/MS 5 0 1 1 7673100 0 0 7673100 11608 436 12212 50081 41627 41627 1 0 0 1070300 RVAIFIEK ARAQRIEYDCELVPRRVAIFIEKTKDGQIL DCELVPRRVAIFIEKTKDGQILPVPNVVVR R R V E K T 1 1 0 0 0 0 1 0 0 2 0 1 0 1 0 0 0 0 0 1 0 0 8 1 974.5913 Q9P258 Q9P258 311 318 RCC2 Protein RCC2 yes yes 2 0.0079468 101.28 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 56040000 0 15522000 40518000 11609 2120 12213 50082;50083;50084 41628;41629;41630 41630 3 0 5151200 6962300 RVATWFNQPAR NGMVLKPHFHKDWQRRVATWFNQPARKIRR DWQRRVATWFNQPARKIRRRKARQAKARRI R R V A R K 2 2 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 11 1 1344.7051 P26373 P26373 21 31 RPL13 60S ribosomal protein L13 yes yes 2;3 5.5385E-28 206.49 By MS/MS By MS/MS 6.5 0.5 3 3 4 2 102050000 0 85620000 16433000 11610 669 12214 50085;50086;50087;50088;50089;50090 41631;41632;41633;41634;41635 41632 5 0 38632000 2614100 RVDALNDEIR LGTDLLSQLSLEDQKRVDALNDEIRQLQQE LEDQKRVDALNDEIRQLQQENRQLLNERIK K R V I R Q 1 2 1 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 10 1 1199.6258 Q9UQE7 Q9UQE7 796 805 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00079941 136.49 By MS/MS 2 0 1 1 6434800 0 6434800 0 11611 2222 12215 50091 41636 41636 1 0 2897700 0 RVDAVIPPYPR FFSEDKYYRVNLRTRRVDAVIPPYPRSIAQ LRTRRVDAVIPPYPRSIAQYWLGCPVPGQA R R V P R S 1 2 0 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 1 2 0 0 11 1 1281.7194 CON__Q3ZBS7 CON__Q3ZBS7 459 469 yes yes 2;3 4.5399E-59 232.88 By MS/MS By MS/MS By MS/MS 7.34 2.59 4 4 2 4 2 7 9 12 6 14 1522700000 476920000 75604000 970180000 + 11612 88 12216 50092;50093;50094;50095;50096;50097;50098;50099;50100;50101;50102;50103;50104;50105;50106;50107;50108;50109;50110;50111;50112;50113;50114;50115;50116;50117;50118;50119;50120;50121;50122;50123 41637;41638;41639;41640;41641;41642;41643;41644;41645;41646;41647;41648;41649;41650;41651;41652;41653;41654;41655;41656;41657;41658;41659;41660;41661;41662;41663;41664;41665;41666;41667;41668;41669;41670;41671;41672;41673;41674;41675;41676;41677 41667 39 611620000 341040000 999320000 RVEEDIQQQK KRLKNTLTQTTENLRRVEEDIQQQKATGSE TENLRRVEEDIQQQKATGSEVSQRKQQLEV R R V Q K A 0 1 0 1 0 3 2 0 0 1 0 1 0 0 0 0 0 0 0 1 0 0 10 1 1271.647 P15924 P15924 1425 1434 DSP Desmoplakin yes yes 3 0.06217 40.727 By MS/MS 1 0 1 1 865890 0 865890 0 11613 572 12217 50124 41678 41678 1 0 423230 0 RVEELVAK QQEIEEKLIEEETARRVEELVAKRVEEELE IEEETARRVEELVAKRVEEELEKRKDEIER R R V A K R 1 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 1 942.54983 Q9NWB6 Q9NWB6 133 140 ARGLU1 Arginine and glutamate-rich protein 1 yes yes 2 0.035182 84.227 By MS/MS 4.5 1.12 1 1 1 1 4 4386600 0 0 4386600 11614 2077 12218 50125;50126;50127;50128 41679 41679 1 0 0 698610 RVEHNQSYSQAGITETEWTSGSSK PLKGRAKTPVTLKQRRVEHNQSYSQAGITE QAGITETEWTSGSSKGGPLQALTRESTRGS R R V S K G 1 1 1 0 0 2 3 2 1 1 0 1 0 0 0 5 3 1 1 1 0 0 24 1 2681.2318 P42167 P42167 216 239 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 3;4 8.2428E-26 172.06 By MS/MS 3.71 1.03 1 2 2 2 7 205840000 0 0 205840000 11615 799 12219 50129;50130;50131;50132;50133;50134;50135 41680;41681;41682 41682 3 0 0 33592000 RVELEAALQQAK AEQRGENALKDAHSKRVELEAALQQAKEEL HSKRVELEAALQQAKEELARMLREYQELMS K R V A K E 3 1 0 0 0 2 2 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 12 1 1354.7569 CON__P19013;P19013 CON__P19013 475 486 KRT4 Keratin, type II cytoskeletal 4 yes no 2;3 0.00082425 126.39 By MS/MS By matching 1.25 0.433 3 1 2 2 47336000 42859000 4476600 0 + 11616 61 12220 50136;50137;50138;50139 41683;41684 41683 2 42859000 2059600 0 RVEPYGENFNK ELGGHLDQQVEEFRRRVEPYGENFNKALVQ EFRRRVEPYGENFNKALVQQMEQLRQKLGP R R V N K A 0 1 2 0 0 0 2 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 11 1 1351.6521 P06727 P06727 306 316 APOA4 Apolipoprotein A-IV yes yes 3 0.022858 60.161 By MS/MS 9 0 1 1 7304300 7304300 0 0 11617 446 12221 50140 41685 41685 1 4099900 0 0 RVFNPYTEFK ADLNQGIGEPQSPSRRVFNPYTEFKEFSRK QSPSRRVFNPYTEFKEFSRKQIKDMEKMFK R R V F K E 0 1 1 0 0 0 1 0 0 0 0 1 0 2 1 0 1 0 1 1 0 0 10 1 1299.6612 Q96C19 Q96C19 78 87 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.065329 76.1 By MS/MS 6 0 1 1 3806500 0 3806500 0 11618 1757 12222 50141 41686 41686 1 0 1317700 0 RVLDELTLAR LNLRMSVEADINGLRRVLDELTLARADLEM INGLRRVLDELTLARADLEMQIESLKEELA R R V A R A 1 2 0 1 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 10 1 1184.6877 CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;Q04695;CON__Q04695;CON__Q6IFX2;CON__P08727;P08727 CON__P02533 223 232 KRT14;KRT16;KRT17;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2 1.6678E-05 152.67 By MS/MS By MS/MS By MS/MS 6.4 1.74 3 1 1 3 1 1 71108000 23183000 9276500 38649000 + 11619 35;73;53;51;91 12223 50142;50143;50144;50145;50146 41687;41688;41689;41690 41690 4 17013000 2391200 5390800 RVLDELTLTK VALRQSVEADINGLRRVLDELTLTKADLEM INGLRRVLDELTLTKADLEMQIESLTEELA R R V T K A 0 1 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 10 1 1186.6921 P13645;CON__P13645 P13645 257 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 7.5167E-38 182.28 By MS/MS By MS/MS By MS/MS 5.46 2.86 3 3 2 3 3 3 3 3 2 3 10 8 10 903100000 502630000 59920000 340550000 + 11620 56 12224 50147;50148;50149;50150;50151;50152;50153;50154;50155;50156;50157;50158;50159;50160;50161;50162;50163;50164;50165;50166;50167;50168;50169;50170;50171;50172;50173;50174 41691;41692;41693;41694;41695;41696;41697;41698;41699;41700;41701;41702;41703;41704;41705;41706;41707;41708;41709;41710;41711;41712;41713;41714;41715;41716 41693 26 492640000 48029000 80982000 RVLDETAR SGIKALYESELADARRVLDETARERARLQI SELADARRVLDETARERARLQIEIGKLRAE R R V A R E 1 2 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 1 958.51959 Q03252 Q03252 105 112 LMNB2 Lamin-B2 yes yes 2 0.026423 88.136 By MS/MS 3 0 1 1 1732100 0 1732100 0 11621 1156 12225 50175 41717 41717 1 0 738380 0 RVLLGETGK ERAYQKQPTIFQNKKRVLLGETGKEKLPRY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK K R V G K E 0 1 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 9 1 971.57638 P62280 P62280 22 30 RPS11 40S ribosomal protein S11 yes yes 2 0.0030379 106.93 By matching By MS/MS 7 0 2 1 1 18411000 0 3842700 14569000 11622 1017 12226 50176;50177 41718 41718 1 0 2206500 2585100 RVLQALEGLK VMPSHFSRGSKSVARRVLQALEGLKMVEKD KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R R V L K M 1 1 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 10 1 1125.687 P39019 P39019 102 111 RPS19 40S ribosomal protein S19 yes yes 2 4.846E-22 189.18 By MS/MS By MS/MS 7.9 1.58 1 1 2 2 2 2 6 4 640340000 0 491530000 148810000 11623 777 12227 50178;50179;50180;50181;50182;50183;50184;50185;50186;50187 41719;41720;41721;41722;41723;41724;41725;41726 41720 8 0 236890000 25690000 RVNILSDMHLR TTQLMILSASEATVKRVNILSDMHLRSIRT ATVKRVNILSDMHLRSIRTKLMLMSRNEEA K R V L R S 0 2 1 1 0 0 0 0 1 1 2 0 1 0 0 1 0 0 0 1 0 0 11 1 1352.7347 P51114 P51114 180 190 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 3 0.0023372 87.878 By matching By MS/MS By MS/MS 3.4 0.49 3 2 1 2 2 33608000 4520700 14378000 14710000 11624 887 12228 50188;50189;50190;50191;50192 41727;41728;41729 41728 3 5215900 5517500 2773200 RVNSASSSNPPAEVDPDTILK LSDSPSMKKESELPRRVNSASSSNPPAEVD SSNPPAEVDPDTILKALFKSSGASVTTQPT R R V L K A 2 1 2 2 0 0 1 0 0 1 1 1 0 0 3 4 1 0 0 2 0 0 21 1 2196.1022 Q9BY77 Q9BY77 380 400 POLDIP3 Polymerase delta-interacting protein 3 yes yes 3 0.069389 21.616 By MS/MS 5 0 1 1 2668600 0 2668600 0 11625 1933 12229 50193 41730 41730 1 0 687870 0 RVPFSLLR ______________________________ ______________________________ R R V L R G 0 2 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 8 1 986.60253 P04792 P04792 5 12 HSPB1 Heat shock protein beta-1 yes yes 2 1.6037E-10 174.52 By MS/MS 7 0 1 1 35631000 0 35631000 0 11626 417 12230 50194 41731 41731 1 0 20459000 0 RVPQAKPVAVEEK RLRNYVPEDEDLKKRRVPQAKPVAVEEKVK KRRVPQAKPVAVEEKVKEQLEAAKPEPVIE R R V E K V 2 1 0 0 0 1 2 0 0 0 0 2 0 0 2 0 0 0 0 3 0 0 13 2 1449.8304 Q8WUD4 Q8WUD4 73 85 CCDC12 Coiled-coil domain-containing protein 12 yes yes 3 0.0032893 87.573 By matching By MS/MS 7 0 2 1 1 12750000 0 5679500 7070200 11627 1672 12231 50195;50196 41732 41732 1 0 3261200 1254600 RVPSNASWEQAMK KEEAKQAFKELLKEKRVPSNASWEQAMKMI EKRVPSNASWEQAMKMIINDPRYSALAKLS K R V M K M 2 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 13 1 1502.73 O75400 O75400 408 420 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 2.5532E-11 181.31 By matching By MS/MS By MS/MS 2 0 3 1 1 1 16798000 2112800 4958900 9726500 11628 258 12232 50197;50198;50199 41733;41734 41734 2 2545700 2233100 2198000 RVQDELAR ARYKAVLQEYGHEERRVQDELARSRKFFTG EYGHEERRVQDELARSRKFFTGSLAEVEKS R R V A R S 1 2 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 8 1 985.53049 Q13049 Q13049 194 201 TRIM32 E3 ubiquitin-protein ligase TRIM32 yes yes 2 0.037254 88.819 By MS/MS 3 0 1 1 0 0 0 0 11629 1217 12233 50200 41735 41735 1 0 0 0 RVQELQQGAFGR LQRGGLKQLSARNRRRVQELQQGAFGRGAR NRRRVQELQQGAFGRGARSKKGKMRKRM__ R R V G R G 1 2 0 0 0 3 1 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 12 1 1387.732 Q8TDD1 Q8TDD1 857 868 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.058866 40.475 By MS/MS 2 0 1 1 3994500 0 0 3994500 11630 1661 12234 50201 41736 41736 1 0 0 902670 RVSISEGDDKIEYR VTKNLVPGESVYGEKRVSISEGDDKIEYRA KRVSISEGDDKIEYRAWNPFRSKLAAAILG K R V Y R A 0 2 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 14 2 1665.8322 P22087 P22087 122 135 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 3 4.8928E-08 171.21 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 50806000 0 7222700 43584000 11631 627 12235 50202;50203;50204 41737;41738;41739 41738 3 0 2500200 6297600 RVSLEPHQGPGTPESK QIAEGTGITTRQQRKRVSLEPHQGPGTPES VSLEPHQGPGTPESKKATSCFPRPMTPRDR K R V S K K 0 1 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 16 1 1717.8747 Q14980 Q14980 1989 2004 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 0.0036486 64.537 By MS/MS By MS/MS 1 0 2 1 1 6622400 0 2014400 4608000 11632 1327 12236 50205;50206 41740;41741 41741 2 0 984600 992870 RVTIMPK VGLFEDTNLCAIHAKRVTIMPKDIQLARRI NLCAIHAKRVTIMPKDIQLARRIRGERA__ K R V P K D 0 1 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 0 0 1 0 0 7 1 843.50004 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 117 123 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2 0.020115 118.05 By MS/MS By MS/MS 7.23 2.26 1 1 1 3 4 1 2 9 4 2455700000 0 641360000 1814300000 11633 1114;1512 12237 50207;50208;50209;50210;50211;50212;50213;50214;50215;50216;50217;50218;50219 41742;41743;41744;41745;41746;41747;41748;41749 41743 8 0 430770000 479140000 RVTIMPKDIQLAR VGLFEDTNLCAIHAKRVTIMPKDIQLARRI AKRVTIMPKDIQLARRIRGERA________ K R V A R R 1 2 0 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 0 1 0 0 13 2 1539.8919 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 117 129 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2;3 8.3265E-07 145.29 By MS/MS By MS/MS 7.75 0.968 1 2 3 2 3 5 272490000 0 73063000 199420000 11634 1114;1512 12238 50220;50221;50222;50223;50224;50225;50226;50227 41750;41751;41752;41753;41754;41755;41756 41755 6 0 34052000 35720000 RVVHLGVGTPGR AKHIKVQAQVKLLEKRVVHLGVGTPGRIKE LEKRVVHLGVGTPGRIKELVKQGGLNLSPL K R V G R I 0 2 0 0 0 0 0 3 1 0 1 0 0 0 1 0 1 0 0 3 0 0 12 1 1246.7258 Q9BQ75 Q9BQ75 204 215 CMSS1 Protein CMSS1 yes yes 3 0.0038997 83.137 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 13376000 0 5336300 8039600 11635 1881 12239 50228;50229;50230 41757;41758 41757 2 0 1847200 1239500 RVVYPLEK AQWLYDNHKDESYLRRVVYPLEKLLTSHKR KDESYLRRVVYPLEKLLTSHKRLVMKDSAV R R V E K L 0 1 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 8 1 1002.5862 O60832 O60832 284 291 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2 0.0077844 101.6 By MS/MS 4 0 1 1 16272000 0 16272000 0 11636 235 12240 50231 41759 41759 1 0 5400100 0 RVVYSAFLMATPR EPLHRGGGQIIPTARRVVYSAFLMATPRLM ARRVVYSAFLMATPRLMEPYYFVEVQAPAD R R V P R L 2 2 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 1 2 0 0 13 1 1509.8126 Q15029 Q15029 814 826 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 0.00016146 92.19 By MS/MS By MS/MS 2 0 2 1 1 2503500 0 2503500 0 11637 1335 12241 50232;50233 41760;41761 41761 2 0 1127400 0 RWDQTADQTPGATPK VNGAAASQPPSKRKRRWDQTADQTPGATPK RWDQTADQTPGATPKKLSSWDQAETPGHTP R R W P K K 2 1 0 2 0 2 0 1 0 0 0 1 0 0 2 0 3 1 0 0 0 0 15 1 1670.8012 O75533 O75533 199 213 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.03077 42.382 By MS/MS 2 0 1 1 0 0 0 0 11638 270 12242 50234 41762 41762 1 0 0 0 RYDDPEVQK NPNNTFYATKRLIGRRYDDPEVQKDIKNVP KRLIGRRYDDPEVQKDIKNVPFKIVRASNG R R Y Q K D 0 1 0 2 0 1 1 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 9 1 1148.5462 P38646 P38646 127 135 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.01244 93.267 By matching By MS/MS 2.5 0.5 1 1 1 1 10638000 0 615840 10022000 11639 774 12243 50235;50236 41763 41763 1 0 277320 1943800 RYDGSQQALDLK LKPEQVEQLKLIMSKRYDGSQQALDLKGLR MSKRYDGSQQALDLKGLRSDPDLVAQNIDV K R Y L K G 1 1 0 2 0 2 0 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 12 1 1392.6997 Q9UBU9 Q9UBU9 219 230 NXF1 Nuclear RNA export factor 1 yes yes 2;3 0.00073517 127.42 By MS/MS 2.6 1.02 1 1 2 1 5 11126000 0 11126000 0 11640 2136 12244 50237;50238;50239;50240;50241 41764;41765 41765 2 0 4842800 0 RYEDQELTGK ERREKEMLERLEKQKRYEDQELTGKNLPAF LEKQKRYEDQELTGKNLPAFRLVDTPEGLP K R Y G K N 0 1 0 1 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 10 1 1237.5939 Q9UIG0 Q9UIG0 579 588 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0072234 99.815 By MS/MS 2 0 1 1 1802300 0 1802300 0 11641 2164 12245 50242 41766 41766 1 0 811610 0 RYELPAPSSGQK ERLAARQPIELLSMKRYELPAPSSGQKNDI SMKRYELPAPSSGQKNDITAWQECVNNSMA K R Y Q K N 1 1 0 0 0 1 1 1 0 0 1 1 0 0 2 2 0 0 1 0 0 0 12 1 1331.6834 O75934 O75934 86 97 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.0015754 119.27 By MS/MS 7 0 1 1 5656200 0 5656200 0 11642 290 12246 50243 41767 41767 1 0 3247800 0 RYETLVGTIGK DETVELDVSDEEMARRYETLVGTIGKKFAR EMARRYETLVGTIGKKFARKRDHANYEEDE R R Y G K K 0 1 0 0 0 0 1 2 0 1 1 1 0 0 0 0 2 0 1 1 0 0 11 1 1235.6874 Q99547 Q99547 117 127 MPHOSPH6 M-phase phosphoprotein 6 yes yes 2 2.8378E-13 178.84 By MS/MS By MS/MS 7 0 2 1 1 22295000 0 5541100 16754000 11643 1848 12247 50244;50245 41768;41769 41769 2 0 3181700 2972900 RYETLVGTIGKK DETVELDVSDEEMARRYETLVGTIGKKFAR MARRYETLVGTIGKKFARKRDHANYEEDEN R R Y K K F 0 1 0 0 0 0 1 2 0 1 1 2 0 0 0 0 2 0 1 1 0 0 12 2 1363.7823 Q99547 Q99547 117 128 MPHOSPH6 M-phase phosphoprotein 6 yes yes 3 0.062243 51.829 By MS/MS 7 0 1 1 3452900 0 3452900 0 11644 1848 12248 50246 41770 41770 1 0 1982700 0 RYIGIVK SVQRPGPYDRPGTARRYIGIVKQAGLERMR YDRPGTARRYIGIVKQAGLERMRPGAYSTG R R Y V K Q 0 1 0 0 0 0 0 1 0 2 0 1 0 0 0 0 0 0 1 1 0 0 7 1 847.52797 P52597 P52597 218 224 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 0.042326 97.596 By MS/MS By MS/MS 5.33 1.11 2 1 2 1 3 3 56654000 0 36861000 19793000 11645 910 12249 50247;50248;50249;50250;50251;50252 41771;41772 41771 2 0 10209000 3261700 RYLDGLTAER INLEPIFQGYIDSLKRYLDGLTAERTSQNS IDSLKRYLDGLTAERTSQNSELNNMQDLVE K R Y E R T 1 2 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 1 0 0 0 10 1 1192.62 CON__P35908;CON__P35908v2;P35908 CON__P35908 244 253 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.01019 96.143 By MS/MS 9 0 1 1 2538200 2538200 0 0 + 11646 65;66 12250 50253 41773 41773 1 1424700 0 0 RYNIPHGPVVGSTR NYADLSDTELTTLLRRYNIPHGPVVGSTRR RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R R Y T R R 0 2 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 14 1 1551.827 P50402 P50402 18 31 EMD Emerin yes yes 2;3 0.00065532 148.19 By MS/MS By MS/MS 6 0 3 1 2 54077000 0 10951000 43126000 11647 878 12251 50254;50255;50256 41774;41775;41776 41776 3 0 3790800 6452100 RYPGFMR IAPNISRAEIISLCKRYPGFMRVALSEPQP AEIISLCKRYPGFMRVALSEPQPERRFFRR K R Y M R V 0 2 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 1 0 0 0 7 1 925.45924 Q9BXP5 Q9BXP5 443 449 SRRT Serrate RNA effector molecule homolog yes yes 2 0.026088 111.69 By MS/MS 2 0 1 1 4824900 0 0 4824900 11648 1929 12252 50257 41777 41777 1 0 0 1090300 RYQDIIHSIHLAR PQGIRESQLKERLEKRYQDIIHSIHLARKP EKRYQDIIHSIHLARKPNLGLKSCDGNQEL K R Y A R K 1 2 0 1 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 0 13 1 1620.8849 Q9UIG0 Q9UIG0 1024 1036 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 4 0.00013115 117.27 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 19740000 0 2244500 17495000 11649 2164 12253 50258;50259;50260 41778;41779 41779 2 0 1010700 3803000 RYQKSTELLIR PHRYRPGTVALREIRRYQKSTELLIRKLPF REIRRYQKSTELLIRKLPFQRLVREIAQDF R R Y I R K 0 2 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 11 2 1405.8041 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 54 64 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2;3 8.8396E-34 212.28 By MS/MS By MS/MS 7.78 0.916 1 2 4 2 5 4 364450000 0 55964000 308490000 11650 1114;1512 12254 50261;50262;50263;50264;50265;50266;50267;50268;50269 41780;41781;41782;41783;41784;41785;41786 41785 7 0 27410000 51276000 SAAASNLSGLSLQEAQQILNVSK ASRAAADARGRAGHRSAAASNLSGLSLQEA GLSLQEAQQILNVSKLSPEEVQKNYEHLFK R S A S K L 4 0 2 0 0 3 1 1 0 1 4 1 0 0 0 5 0 0 0 1 0 0 23 0 2328.2285 Q9Y3D7 Q9Y3D7 45 67 PAM16 Mitochondrial import inner membrane translocase subunit TIM16 yes yes 2;3 8.4962E-23 163.8 By MS/MS By MS/MS 8.4 0.49 3 2 1 4 45816000 0 2009400 43807000 11651 2270 12255 50270;50271;50272;50273;50274 41787;41788;41789;41790 41790 4 0 914220 10865000 SAALPIFSSFVSNWDEATK EKWESVKLLFVKTEKSAALPIFSSFVSNWD PIFSSFVSNWDEATKRSLLNKKKKEARRKR K S A T K R 3 0 1 1 0 0 1 0 0 1 1 1 0 2 1 4 1 1 0 1 0 0 19 0 2069.0106 O76021 O76021 258 276 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2;3 9.7243E-13 170.95 By MS/MS By MS/MS By MS/MS 3.33 1.15 1 1 2 4 1 1 4 4 118830000 1072000 6265700 111490000 11652 295 12256 50275;50276;50277;50278;50279;50280;50281;50282;50283 41791;41792;41793;41794;41795;41796;41797 41794 7 836380 2080300 20897000 SAALPIFSSFVSNWDEATKR EKWESVKLLFVKTEKSAALPIFSSFVSNWD IFSSFVSNWDEATKRSLLNKKKKEARRKRR K S A K R S 3 1 1 1 0 0 1 0 0 1 1 1 0 2 1 4 1 1 0 1 0 0 20 1 2225.1117 O76021 O76021 258 277 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 3 6.1532E-14 143.46 By MS/MS By MS/MS 3.33 1.7 1 1 2 1 1 5 1 107880000 0 19340000 88537000 11653 295 12257 50284;50285;50286;50287;50288;50289 41798;41799;41800;41801 41801 4 0 7707200 17172000 SAALTWLIPTLSSPR YAQIRGFIQDQYCEKSAALTWLIPTLSSPR SAALTWLIPTLSSPRDQFDPASYIIGPEED K S A P R D 2 1 0 0 0 0 0 0 0 1 3 0 0 0 2 3 2 1 0 0 0 0 15 0 1611.8984 Q8WUU5 Q8WUU5 182 196 GATAD1 GATA zinc finger domain-containing protein 1 yes yes 2 0.0012321 96.334 By matching By MS/MS 6 0 2 1 1 4746100 467470 0 4278600 11654 1678 12258 50290;50291 41802 41802 1 622450 0 640130 SAAMTLNER HIVSLVHHVKEQYFKSAAMTLNERFTSYQK KEQYFKSAAMTLNERFTSYQKATEEHSTRQ K S A E R F 2 1 1 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 9 0 991.47568 Q9NYF8 Q9NYF8 623 631 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.0030141 101.54 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 17529000 4608300 0 12921000 11655 2097 12259 50292;50293;50294 41803;41804 41804 2 5552500 0 2827200 SAAPSTLDSSSTAPAQLGK QQQLEKELNTLRVTRSAAPSTLDSSSTAPA STLDSSSTAPAQLGKKGKEFEFSQLPLKVE R S A G K K 4 0 0 1 0 1 0 1 0 0 2 1 0 0 2 5 2 0 0 0 0 0 19 0 1787.8901 Q9Y5M8 Q9Y5M8 209 227 SRPRB Signal recognition particle receptor subunit beta yes yes 2 7.2251E-05 98.592 By matching By MS/MS 7 0 2 1 1 13228000 0 5245800 7982300 11656 2299 12260 50295;50296 41805 41805 1 0 3012200 1416400 SAAQAAAQTNSNAAGK KKEAGGGGVGGPGAKSAAQAAAQTNSNAAG AAQAAAQTNSNAAGKQLRKESQKDRKNPLP K S A G K Q 7 0 2 0 0 2 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 16 0 1459.7015 Q8NC51 Q8NC51 53 68 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 3.6252E-06 160.52 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 3 2 7453200 0 3524200 3929000 11657 1630 12261 50297;50298;50299;50300;50301 41806;41807;41808;41809;41810 41806 5 0 1072300 670980 SAASFGSFHLIR WSFYSSMVIRDLTLRSAASFGSFHLIRLLY TLRSAASFGSFHLIRLLYDEYMYYLIEHRV R S A I R L 2 1 0 0 0 0 0 1 1 1 1 0 0 2 0 3 0 0 0 0 0 0 12 0 1291.6673 P22670;P48378;P48380 P22670 868 879 RFX1;RFX2;RFX3 MHC class II regulatory factor RFX1;DNA-binding protein RFX2;Transcription factor RFX3 yes no 3 0.053559 43.991 By MS/MS 2 0.816 1 1 1 3 10826000 0 0 10826000 11658 633 12262 50302;50303;50304 41811 41811 1 0 0 2297000 SAASYALGSISVGNLPEYLPFVLQEITSQPK SVILEAFSSPSEEVKSAASYALGSISVGNL EYLPFVLQEITSQPKRQYLLLHSLKEIISS K S A P K R 3 0 1 0 0 2 2 2 0 2 4 1 0 1 3 5 1 0 2 2 0 0 31 0 3278.7075 Q86VP6 Q86VP6 874 904 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 3 3.2333E-06 53.615 By MS/MS 2 0 1 1 2722500 0 0 2722500 11659 1554 12263 50305 41812 41812 1 0 0 615240 SAATLITHPFHVITLR FDHVIKETTREMIARSAATLITHPFHVITL AATLITHPFHVITLRSMVQFIGRESKYCGL R S A L R S 2 1 0 0 0 0 0 0 2 2 2 0 0 1 1 1 3 0 0 1 0 0 16 0 1776.0046 Q9Y6C9 Q9Y6C9 132 147 MTCH2 Mitochondrial carrier homolog 2 yes yes 2;4 9.4086E-06 155.02 By MS/MS 6.33 0.471 2 1 3 18006000 0 0 18006000 11660 2311 12264 50306;50307;50308 41813;41814 41814 2 0 0 2728600 SADESGQALLAAGHYASDEVR QEHKGEIDAHEDSFKSADESGQALLAAGHY QALLAAGHYASDEVREKLTVLSEERAALLE K S A V R E 5 1 0 2 0 1 2 2 1 0 2 0 0 0 0 3 0 0 1 1 0 0 21 0 2145.9927 Q13813 Q13813 419 439 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 7.3156E-163 281.92 By MS/MS By MS/MS 1.67 0.745 3 2 1 1 5 132980000 0 27279000 105700000 11661 1268 12265 50309;50310;50311;50312;50313;50314 41815;41816;41817 41817 3 0 13334000 22992000 SADFNPDFVFTEK PIVLGRRQKALGKNRSADFNPDFVFTEKEG NRSADFNPDFVFTEKEGTYDGSWALADVMS R S A E K E 1 0 1 2 0 0 1 0 0 0 0 1 0 3 1 1 1 0 0 1 0 0 13 0 1515.6882 Q96GQ7 Q96GQ7 79 91 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.0080225 91.937 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 18790000 0 7106900 11683000 11662 1793 12266 50315;50316 41818;41819 41819 2 0 3200300 2266000 SADTLWGIQK VKVTLTSEEEARLKKSADTLWGIQKELQF_ ARLKKSADTLWGIQKELQF___________ K S A Q K E 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 1 1 1 0 0 0 0 10 0 1117.5768 P00338 P00338 319 328 LDHA L-lactate dehydrogenase A chain yes yes 2 0.0072023 93.162 By MS/MS 6 0 1 1 10973000 0 10973000 0 11663 356 12267 50317 41820 41820 1 0 3798300 0 SAEEEAADLPTKPTK SSNGGESSSRSAEKRSAEEEAADLPTKPTK SAEEEAADLPTKPTKISKFGFAIGSQTTKK R S A T K I 3 0 0 1 0 0 3 0 0 0 1 2 0 0 2 1 2 0 0 0 0 0 15 1 1585.7835 Q8WW12 Q8WW12 53 67 PCNP PEST proteolytic signal-containing nuclear protein yes yes 2 0.0036395 140.14 By MS/MS 7 0 1 1 11428000 0 0 11428000 11664 1686 12268 50318 41821 41821 1 0 0 2027900 SAEFLLHMLK QAKQWGWTQGRWPKKSAEFLLHMLKNAESN RWPKKSAEFLLHMLKNAESNAELKGLDVDS K S A L K N 1 0 0 0 0 0 1 0 1 0 3 1 1 1 0 1 0 0 0 0 0 0 10 0 1187.6373 P18621 P18621 87 96 RPL17 60S ribosomal protein L17 yes yes 2 0.00070185 114.64 By matching By MS/MS By MS/MS 7.43 0.728 5 1 1 1 2 4 158620000 1595100 28202000 128830000 11665 597 12269;12270 50319;50320;50321;50322;50323;50324;50325 41822;41823;41824;41825 41824 261 4 3437800 16194000 23036000 SAEIDSDDTGGSAAQK LRKLFVQDLATRVKKSAEIDSDDTGGSAAQ AEIDSDDTGGSAAQKQKISFLENNLEQLTK K S A Q K Q 3 0 0 3 0 1 1 2 0 1 0 1 0 0 0 3 1 0 0 0 0 0 16 0 1550.6696 P33176 P33176 814 829 KIF5B Kinesin-1 heavy chain yes yes 2 0.00010358 103.88 By MS/MS 2 0 1 1 1542900 0 1542900 0 11666 730 12271 50326 41826 41826 1 0 694790 0 SAELNKEVSTNTAMIQTSK AERNRRDAEEWFHTKSAELNKEVSTNTAMI NKEVSTNTAMIQTSKTEITELRRTLQGLEI K S A S K T 2 0 2 0 0 1 2 0 0 1 1 2 1 0 0 3 3 0 0 1 0 0 19 1 2051.0205 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 300 318 KRT13 Keratin, type I cytoskeletal 13 no no 2;3 5.1893E-12 164.65 By MS/MS By matching 1.33 0.471 4 2 2 4 59709000 24401000 0 35308000 + 11667 57;548 12272 50327;50328;50329;50330;50331;50332 41827;41828 41827 2 24401000 0 7743000 SAEYGSSLQSSR AEAYSRSQLEEQAARSAEYGSSLQSSRSEI AARSAEYGSSLQSSRSEIADLNVRIQKLRS R S A S R S 1 1 0 0 0 1 1 1 0 0 1 0 0 0 0 5 0 0 1 0 0 0 12 0 1270.579 Q6KB66;CON__Q6KB66-1 Q6KB66 285 296 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.00070633 121.6 By MS/MS By matching 8.4 1.62 1 1 1 2 4 1 11417000 11150000 0 266900 + 11668 93 12273 50333;50334;50335;50336;50337 41829;41830;41831;41832 41832 4 16387000 0 583730 SAFSNLFGGEPLSYTR ______________________________ AFSNLFGGEPLSYTRFSLARQVDGDNSHVE R S A T R F 1 1 1 0 0 0 1 2 0 0 2 0 0 2 1 3 1 0 1 0 0 0 16 0 1744.842 P02786 P02786 7 22 TFRC Transferrin receptor protein 1;Transferrin receptor protein 1, serum form yes yes 2 0.0017008 91.62 By MS/MS By MS/MS 5.5 3.5 1 1 1 1 8642700 0 2719600 5923100 11669 398 12274 50338;50339 41833;41834 41833 2 0 1224700 1892100 SAGEEEDGPVLTDEQK QVEALPGPSLDQWHRSAGEEEDGPVLTDEQ AGEEEDGPVLTDEQKSRIQAMKPMTKEEWD R S A Q K S 1 0 0 2 0 1 4 2 0 0 1 1 0 0 1 1 1 0 0 1 0 0 16 0 1702.7534 Q66PJ3 Q66PJ3 332 347 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 yes yes 2 1.1345E-18 191.33 By MS/MS 7 0 1 1 8227200 0 0 8227200 11670 1466 12275 50340 41835 41835 1 0 0 1459900 SAGGLMFNTGIGQHILK IGRRRGRQEQRRELKSAGGLMFNTGIGQHI GGLMFNTGIGQHILKNPLIINSIIDKAALR K S A L K N 1 0 1 0 0 1 0 4 1 2 2 1 1 1 0 1 1 0 0 0 0 0 17 0 1742.9138 Q9UNQ2 Q9UNQ2 24 40 DIMT1 Probable dimethyladenosine transferase yes yes 3 0.012361 50.608 By MS/MS 5.5 0.5 1 1 2 6375600 0 6375600 0 11671 2210 12276 50341;50342 41836 41836 1 0 2052200 0 SAGLAFSLYQAMAK TAEKLSPKAATLAERSAGLAFSLYQAMAKD RSAGLAFSLYQAMAKDQAVENILVSPVVVA R S A A K D 4 0 0 0 0 1 0 1 0 0 2 1 1 1 0 2 0 0 1 0 0 0 14 0 1456.7384 P50454 P50454 47 60 SERPINH1 Serpin H1 yes yes 2 0.00058367 140.49 By MS/MS By MS/MS 5.14 1.96 1 1 2 1 1 1 3 4 32618000 0 13565000 19053000 11672 879 12277 50343;50344;50345;50346;50347;50348;50349 41837;41838;41839;41840 41840 4 0 4036500 2800800 SAGQGEVLVYVEDPAGHQEEAK GNMVKKRAEFTVETRSAGQGEVLVYVEDPA LVYVEDPAGHQEEAKVTANNDKNRTFSVWY R S A A K V 3 0 0 1 0 2 4 3 1 0 1 1 0 0 1 1 0 0 1 3 0 0 22 0 2312.0921 P21333 P21333 310 331 FLNA Filamin-A yes yes 3 1.7805E-07 87.208 By MS/MS By matching 1.5 0.5 1 1 1 1 10767000 0 6224800 4542200 11673 623 12278 50350;50351 41841 41841 1 0 3042600 1026400 SAGWNIPIGLLYCDLPEPR NQLRGKKSCHTGLGRSAGWNIPIGLLYCDL NIPIGLLYCDLPEPRKPLEKAVANFFSGSC R S A P R K 1 1 1 1 1 0 1 2 0 2 3 0 0 0 3 1 0 1 1 0 0 0 19 0 2170.0881 P02787 P02787 144 162 TF Serotransferrin yes yes 3 0.0071766 50.425 By MS/MS 9 0 1 1 602110 602110 0 0 11674 399 12279 50352 41842 41842 1 337970 0 0 SAHATAPVNIAGSR RTPQAPASANLVGPRSAHATAPVNIAGSRT RSAHATAPVNIAGSRTAAALAPASLTSARM R S A S R T 4 1 1 0 0 0 0 1 1 1 0 0 0 0 1 2 1 0 0 1 0 0 14 0 1350.7004 Q9UQ35 Q9UQ35 2343 2356 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 0.00013003 136.96 By MS/MS By MS/MS 2.25 1.3 2 1 1 1 3 41862000 0 12322000 29540000 11675 2219 12280 50353;50354;50355;50356 41843;41844;41845;41846 41844 4 0 6022900 5853800 SAHLQWMVVR ______________________________ ______________________________ M S A V R N 1 1 0 0 0 1 0 0 1 0 1 0 1 0 0 1 0 1 0 2 0 0 10 0 1225.639 P46779 P46779 2 11 RPL28 60S ribosomal protein L28 yes yes 2 4.1533E-05 129.72 By MS/MS By MS/MS By MS/MS 7.18 0.716 2 5 4 1 4 6 588400000 1764700 113060000 473570000 11676 830 12281;12282 50357;50358;50359;50360;50361;50362;50363;50364;50365;50366;50367 41847;41848;41849;41850;41851;41852;41853;41854;41855;41856 41856 408 10 3803200 55767000 75632000 SAHLTNPWNEHKPVK FKIDWICRRELPFTKSAHLTNPWNEHKPVK SAHLTNPWNEHKPVKIGRDGQEIELECGTQ K S A V K I 1 0 2 0 0 0 1 0 2 0 1 2 0 0 2 1 1 1 0 1 0 0 15 1 1756.9009 Q96MU7 Q96MU7 458 472 YTHDC1 YTH domain-containing protein 1 yes yes 3;4 0.0034438 72.321 By MS/MS 2.33 0.471 2 1 3 47007000 0 0 47007000 11677 1813 12283 50368;50369;50370 41857;41858 41858 2 0 0 10454000 SAIDLTPIVVEDKEEK TEPKGAADVEKVEEKSAIDLTPIVVEDKEE AIDLTPIVVEDKEEKKEEEEKKEVMLQNGE K S A E K K 1 0 0 2 0 0 3 0 0 2 1 2 0 0 1 1 1 0 0 2 0 0 16 1 1784.9408 Q14839 Q14839 1648 1663 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00031503 147.24 By MS/MS 1 0 1 1 10385000 0 0 10385000 11678 1321 12284 50371 41859 41859 1 0 0 2237600 SAINEVVTR ______________________________ EKKKGRSAINEVVTREYTINIHKRIHGVGF R S A T R E 1 1 1 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 9 0 987.53491 P62899 P62899 15 23 RPL31 60S ribosomal protein L31 yes yes 2 4.7793E-07 154.49 By MS/MS By MS/MS By MS/MS 8.38 1.11 2 3 1 2 1 3 4 267140000 20877000 115520000 130740000 11679 1048 12285 50372;50373;50374;50375;50376;50377;50378;50379 41860;41861;41862;41863;41864;41865;41866;41867 41862 8 17924000 61341000 40301000 SAIPAEESDQLLIRPLGAGQEVGR ______________________________ QLLIRPLGAGQEVGRSCIILEFKGRKIMLD M S A G R S 3 2 0 1 0 2 3 3 0 2 3 0 0 0 2 2 0 0 0 1 0 0 24 1 2505.3187 Q9UKF6 Q9UKF6 2 25 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 yes yes 3 0.0010605 50.029 By MS/MS 3 0 1 1 3149600 0 0 3149600 11680 2178 12286 50380 41868 41868 0 0 0 610870 SAIQNLHSFDPFADASK ______________________________ IQNLHSFDPFADASKGDDLLPAGTEDYIHI M S A S K G 3 0 1 2 0 1 0 0 1 1 1 1 0 2 1 3 0 0 0 0 0 0 17 0 1846.885 P41567 P41567 2 18 EIF1 Eukaryotic translation initiation factor 1 yes yes 2 1.8078E-134 216.54 By MS/MS By MS/MS 9 0 2 1 1 0 0 0 0 11681 797 12287 50381;50382 41869;41870 41870 2 0 0 0 SAIVHLINYQDDAELATR ATNLQRLAEPSQLLKSAIVHLINYQDDAEL VHLINYQDDAELATRALPELTKLLNDEDPV K S A T R A 3 1 1 2 0 1 1 0 1 2 2 0 0 0 0 1 1 0 1 1 0 0 18 0 2028.0276 P14923 P14923 125 142 JUP Junction plakoglobin yes yes 3 9.3216E-29 116.29 By MS/MS By MS/MS 3.67 3.77 2 1 2 1 8439600 2935100 0 5504500 11682 567 12288 50383;50384;50385 41871;41872 41871 2 2935100 0 1186000 SAIYQLEEEYENLLK YRWQLDKIKADLREKSAIYQLEEEYENLLK SAIYQLEEEYENLLKASFERMDHLRQLQNI K S A L K A 1 0 1 0 0 1 4 0 0 1 3 1 0 0 0 1 0 0 2 0 0 0 15 0 1840.9095 P15924 P15924 246 260 DSP Desmoplakin yes yes 2 0.00040174 137.16 By MS/MS By MS/MS 1 0 2 1 1 17468000 0 1055100 16413000 11683 572 12289 50386;50387 41873;41874 41874 2 0 515740 3536300 SALAFLNR MCDTSGSIQLSEEQKSALAFLNRGQPSSSN QLSEEQKSALAFLNRGQPSSSNAGNKRLST K S A N R G 2 1 1 0 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 8 0 890.4974 Q9H0H5 Q9H0H5 123 130 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 0.00024955 135.87 By matching By MS/MS By MS/MS 4.8 1.83 2 1 2 1 3 1 18207000 1161500 11256000 5789500 11684 1963 12290 50388;50389;50390;50391;50392 41875;41876 41875 2 1340200 4825300 1027300 SALAPNLLTSGK RFCAFGGNPPVTGPRSALAPNLLTSGKKKK GPRSALAPNLLTSGKKKKEMQVTEAPVTQE R S A G K K 2 0 1 0 0 0 0 1 0 0 3 1 0 0 1 2 1 0 0 0 0 0 12 0 1170.6608 O15446 O15446 163 174 CD3EAP DNA-directed RNA polymerase I subunit RPA34 yes yes 2 0.023883 82.171 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 19890000 0 11273000 8617500 11685 182 12291 50393;50394;50395 41877;41878 41877 2 0 4690600 1671400 SALASVIMGLSPILGK PCIKELVSDANQHVKSALASVIMGLSPILG ALASVIMGLSPILGKDNTIEHLLPLFLAQL K S A G K D 2 0 0 0 0 0 0 2 0 2 3 1 1 0 1 3 0 0 0 1 0 0 16 0 1555.9008 P30153 P30153 343 358 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 2;3 4.4755E-05 116.13 By MS/MS By MS/MS By MS/MS 4.67 1.33 2 3 1 2 1 1 2 6 33971000 2144900 910340 30916000 11686 712 12292 50396;50397;50398;50399;50400;50401;50402;50403;50404 41879;41880;41881;41882;41883 41883 5 1673400 275060 5342600 SALDQYR QYDIDDAIAKNLIDRSALDQYRAGTLSITE IAKNLIDRSALDQYRAGTLSITEFADMLSG R S A Y R A 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 7 0 851.41373 Q15149 Q15149 4354 4360 PLEC Plectin yes yes 2 0.013661 114.02 By MS/MS 1.5 0.5 1 1 2 8039600 0 8039600 0 11687 1348 12293 50405;50406 41884 41884 1 0 3872200 0 SALGPGVPHIINTK DTLIKFRAHRVVKRKSALGPGVPHIINTKL KSALGPGVPHIINTKLLKHFTCLTYNNGRL K S A T K L 1 0 1 0 0 0 0 2 1 2 1 1 0 0 2 1 1 0 0 1 0 0 14 0 1402.7932 Q9GZS1 Q9GZS1 296 309 POLR1E DNA-directed RNA polymerase I subunit RPA49 yes yes 3 0.063964 37.092 By MS/MS 5 0 1 1 2171300 0 2171300 0 11688 1953 12294 50407 41885 41885 1 0 559700 0 SALLALGLK SSWEELASLGLDRLKSALLALGLKCGGTLE GLDRLKSALLALGLKCGGTLEERAQRLFST K S A L K C 2 0 0 0 0 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 9 0 884.5695 Q12874 Q12874 265 273 SF3A3 Splicing factor 3A subunit 3 yes yes 1;2 0.017807 95.741 By matching By MS/MS By MS/MS 3.67 0.471 2 4 1 1 4 43941000 2766900 5431900 35742000 11689 1206 12295 50408;50409;50410;50411;50412;50413 41886;41887;41888;41889 41888 3 2158700 1802700 6298300 SALLPVLHHK KNTGSKIEEDFPHIRSALLPVLHHKSKKGP FPHIRSALLPVLHHKSKKGPPRQAKYAIHC R S A H K S 1 0 0 0 0 0 0 0 2 0 3 1 0 0 1 1 0 0 0 1 0 0 10 0 1113.6659 Q9NTI5 Q9NTI5 708 717 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.055085 71.501 By MS/MS 1.5 0.5 1 1 2 43745000 0 0 43745000 11690 2053 12296 50414;50415 41890 41890 1 0 0 9553000 SALPYSSFSSDQGLGESSAAPSQPITAVK AGPSEQVNSKAPLSKSALPYSSFSSDQGLG GESSAAPSQPITAVKDMPVRSGGLLPDPPR K S A V K D 4 0 0 1 0 2 1 2 0 1 2 1 0 1 3 8 1 0 1 1 0 0 29 0 2881.3981 P49750 P49750 707 735 YLPM1 YLP motif-containing protein 1 yes yes 3 0.00066299 42.59 By MS/MS By matching 1.5 0.5 1 1 1 1 10684000 0 8096100 2588100 11691 865 12297 50416;50417 41891 41891 1 0 3957300 584860 SALQILFSEDSTK NISLKRVSKMPAFLRSALQILFSEDSTKLF LRSALQILFSEDSTKLFVASNQGALHIVQL R S A T K L 1 0 0 1 0 1 1 0 0 1 2 1 0 1 0 3 1 0 0 0 0 0 13 0 1437.7351 Q969X6 Q969X6 439 451 CIRH1A Cirhin yes yes 2 3.7843E-08 173.64 By matching By MS/MS By MS/MS 3 0 3 1 1 1 22458000 3702000 3471500 15284000 11692 1746 12298 50418;50419;50420 41892;41893 41893 2 4271200 1479900 2964400 SALQSINEWAAQTTDGK HYNCEHSKINFRDKRSALQSINEWAAQTTD LQSINEWAAQTTDGKLPEVTKDVERTDGAL R S A G K L 3 0 1 1 0 2 1 1 0 1 1 1 0 0 0 2 2 1 0 0 0 0 17 0 1818.8748 P50454 P50454 168 184 SERPINH1 Serpin H1 yes yes 2 7.1575E-06 149.02 By MS/MS 5 0 1 1 14531000 0 0 14531000 11693 879 12299 50421 41894 41894 1 0 0 2026800 SALSGHLETVILGLLK AYQRRTKKELASALKSALSGHLETVILGLL ALSGHLETVILGLLKTPAQYDASELKASMK K S A L K T 1 0 0 0 0 0 1 2 1 1 5 1 0 0 0 2 1 0 0 1 0 0 16 0 1649.9716 P07355;A6NMY6 P07355 89 104 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2;3 3.0372E-08 84.874 By MS/MS By MS/MS By MS/MS 4.33 2.05 1 1 1 2 1 2 1 2 3 4 16510000 2362600 3879600 10268000 11694 459 12300 50422;50423;50424;50425;50426;50427;50428;50429;50430 41895;41896;41897;41898;41899;41900;41901 41897 7 1926000 1343000 1932300 SALVKPVTINVGR LFSATMPKKIQNFAKSALVKPVTINVGRAG AKSALVKPVTINVGRAGAASLDVIQEVEYV K S A G R A 1 1 1 0 0 0 0 1 0 1 1 1 0 0 1 1 1 0 0 3 0 0 13 1 1352.814 Q9UJV9 Q9UJV9 388 400 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 3 0.003815 81.278 By matching By MS/MS 3.33 0.471 2 1 1 2 23825000 0 8916500 14908000 11695 2171 12301 50431;50432;50433 41902;41903 41903 2 0 3801100 2745300 SAMPEGYVQER FSRYPDHMKRHDFFKSAMPEGYVQERTIFF DFFKSAMPEGYVQERTIFFKDDGNYKTRAE K S A E R T 1 1 0 0 0 1 2 1 0 0 0 0 1 0 1 1 0 0 1 1 0 0 11 0 1265.571 CON__Q9U6Y5 CON__Q9U6Y5 86 96 yes yes 2 3.6217E-05 147.2 By MS/MS By MS/MS By MS/MS 5.37 1.46 3 2 5 4 4 1 2 6 11 1111300000 37836000 295910000 777580000 + 11696 101 12302;12303 50434;50435;50436;50437;50438;50439;50440;50441;50442;50443;50444;50445;50446;50447;50448;50449;50450;50451;50452 41904;41905;41906;41907;41908;41909;41910;41911;41912;41913;41914;41915;41916;41917;41918;41919;41920;41921;41922;41923;41924;41925;41926 41914 64 23 30931000 87912000 113770000 SAMQSVVDDWIESYK GVENMMLFEVVKMGKSAMQSVVDDWIESYK SAMQSVVDDWIESYKHDRDIALLDLINFFI K S A Y K H 1 0 0 2 0 1 1 0 0 1 0 1 1 0 0 3 0 1 1 2 0 0 15 0 1756.7978 Q8N3U4;Q8WVM7 Q8N3U4 93 107 STAG2;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.0052521 83.047 By MS/MS 2 0 1 1 4278200 0 0 4278200 11697 1603 12304 50453 41927 41927 1 0 0 966790 SAMQSVVDDWIESYKHDR GVENMMLFEVVKMGKSAMQSVVDDWIESYK QSVVDDWIESYKHDRDIALLDLINFFIQCS K S A D R D 1 1 0 3 0 1 1 0 1 1 0 1 1 0 0 3 0 1 1 2 0 0 18 1 2164.9848 Q8N3U4 Q8N3U4 93 110 STAG2 Cohesin subunit SA-2 yes yes 3 3.0786E-09 131.82 By MS/MS 1.5 0.5 1 1 2 9646700 0 0 9646700 11698 1603 12305 50454;50455 41928;41929 41929 2 0 0 2140200 SANNTPENSPNFPNFR FVELLSPRRKRRGRKSANNTPENSPNFPNF ANNTPENSPNFPNFRVIATKSSEQSRSVNI K S A F R V 1 1 5 0 0 0 1 0 0 0 0 0 0 2 3 2 1 0 0 0 0 0 16 0 1804.8129 Q9NRL2 Q9NRL2 1363 1378 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A yes yes 2 0.017504 77.597 By MS/MS 1 0 1 1 3555200 0 0 3555200 11699 2045 12306 50456 41930 41930 0 0 0 766030 SANSELGGIWSVGQR NNARYLWKRIPPAIKSANSELGGIWSVGQR SANSELGGIWSVGQRIWQRDFPGIYTTINA K S A Q R I 1 1 1 0 0 1 1 3 0 1 1 0 0 0 0 3 0 1 0 1 0 0 15 0 1559.7692 Q99627 Q99627 66 80 COPS8 COP9 signalosome complex subunit 8 yes yes 2 0.00023204 150.06 By matching By MS/MS 7 0 2 1 1 5577700 1505300 0 4072400 11700 1856 12307 50457;50458 41931 41931 1 3244100 0 722630 SANYCHTSQGDPIGLILLGEVALGNMYELK YMFGKGIYFADMVSKSANYCHTSQGDPIGL ILLGEVALGNMYELKHASHISKLPKGKHSV K S A L K H 2 0 2 1 1 1 2 4 1 2 5 1 1 0 1 2 1 0 2 1 0 0 30 0 3262.6002 P09874 P09874 904 933 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 3.9976E-55 171.05 By MS/MS 1.5 0.5 1 1 2 148620000 0 0 148620000 11701 492 12308 50459;50460 41932 41932 1 0 0 33554000 SAPASPNHAGVLSAHSSGAQTPESLSR GVPCFRTPLGPLSSRSAPASPNHAGVLSAH SAHSSGAQTPESLSREGSPAPLEPEPGAAQ R S A S R E 5 1 1 0 0 1 1 2 2 0 2 0 0 0 3 7 1 0 0 1 0 0 27 0 2615.2688 Q01167 Q01167 369 395 FOXK2 Forkhead box protein K2 yes yes 4 9.6321E-07 64.16 By MS/MS 3 0 1 1 9853900 0 0 9853900 11702 1132 12309 50461 41933 41933 1 0 0 1911200 SAPFFIPTIPGLVPR IKKKNKPKEPPKVPKSAPFFIPTIPGLVPR SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV K S A P R Y 1 1 0 0 0 0 0 1 0 2 1 0 0 2 4 1 1 0 0 1 0 0 15 0 1610.9184 Q8NI36 Q8NI36 786 800 WDR36 WD repeat-containing protein 36 yes yes 2 0.00065746 102.4 By MS/MS By MS/MS 2.25 1.3 2 1 1 3 1 12274000 0 5746500 6527200 11703 1648 12310 50462;50463;50464;50465 41934;41935;41936;41937 41937 4 0 2597700 1406400 SAPLEIGLQR GYLNGEASTSASIDRSAPLEIGLQRSTQVK ASIDRSAPLEIGLQRSTQVKRAADEVLAEA R S A Q R S 1 1 0 0 0 1 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 10 0 1082.6084 Q6P1J9 Q6P1J9 111 120 CDC73 Parafibromin yes yes 2 0.032651 77.318 By MS/MS 2 0.816 1 1 1 3 24449000 0 0 24449000 11704 1486 12311 50466;50467;50468 41938 41938 1 0 0 5182700 SAPWNSFLPPPPPMPGPR NSRSPGNKSDNIKPKSAPWNSFLPPPPPMP WNSFLPPPPPMPGPRLGPGKPGLKFNGPPP K S A P R L 1 1 1 0 0 0 0 1 0 0 1 0 1 1 8 2 0 1 0 0 0 0 18 0 1943.9716 Q16637 Q16637 187 204 SMN1 Survival motor neuron protein yes yes 2;3 4.2169E-08 110.86 By MS/MS By MS/MS 6 0.577 1 4 1 2 4 54782000 0 17219000 37563000 11705 1394 12312 50469;50470;50471;50472;50473;50474 41939;41940;41941;41942;41943;41944 41942 6 0 5960500 5633700 SAQAFTHLK WSQKCLQDNNWDYTRSAQAFTHLKAKGEIP NWDYTRSAQAFTHLKAKGEIPEVAFMK___ R S A L K A 2 0 0 0 0 1 0 0 1 0 1 1 0 1 0 1 1 0 0 0 0 0 9 0 1001.5294 Q9UBU9 Q9UBU9 599 607 NXF1 Nuclear RNA export factor 1 yes yes 2 0.0098012 88.948 By MS/MS By matching 3.5 0.5 1 1 1 1 6931100 0 5245300 1685800 11706 2136 12313 50475;50476 41945 41945 1 0 2236100 275340 SAQPLPLKIEELALAK ADYSAQKDLEPESDRSAQPLPLKIEELALA AQPLPLKIEELALAKGITEECLKQPSLEQK R S A A K G 3 0 0 0 0 1 2 0 0 1 4 2 0 0 2 1 0 0 0 0 0 0 16 1 1720.0135 Q9UKV3 Q9UKV3 525 540 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 0.0029807 68.481 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 13376000 0 5030800 8344900 11707 2184 12314 50477;50478;50479;50480 41946;41947;41948 41947 3 0 2368800 1821600 SAQTFLSEIR ALYVYEYLLHVGAQKSAQTFLSEIRWEKNI VGAQKSAQTFLSEIRWEKNITLGEPPGFLH K S A I R W 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 2 1 0 0 0 0 0 10 0 1150.5982 P81877;Q9BWG4;Q9BWW4 P81877 38 47 SSBP2;SSBP4;SSBP3 Single-stranded DNA-binding protein 2;Single-stranded DNA-binding protein 4;Single-stranded DNA-binding protein 3 yes no 2 0.0062099 95.311 By MS/MS 5 0 1 1 7752000 0 0 7752000 11708 1095 12315 50481 41949 41949 1 0 0 1081300 SASAPAAEGEGTPTQPASEK ______________________________ AAEGEGTPTQPASEKEPEMPGPREESEEEE M S A E K E 5 0 0 0 0 1 3 2 0 0 0 1 0 0 3 3 2 0 0 0 0 0 20 0 1884.8701 P35659 P35659 2 21 DEK Protein DEK yes yes 2 1.0642E-70 232.5 By MS/MS By MS/MS 5 0.707 1 2 1 1 3 55264000 0 4633100 50631000 11709 758 12316 50482;50483;50484;50485 41950;41951;41952;41953 41951 4 0 1194300 7724500 SASAPAAEGEGTPTQPASEKEPEMPGPR ______________________________ TQPASEKEPEMPGPREESEEEEDEDDEEEE M S A P R E 5 1 0 0 0 1 5 3 0 0 0 1 1 0 6 3 2 0 0 0 0 0 28 1 2778.2767 P35659 P35659 2 29 DEK Protein DEK yes yes 2;3 1.8141E-269 320.5 By MS/MS By MS/MS 4.3 1.1 1 1 3 4 1 1 9 179470000 0 3740600 175730000 11710 758 12317;12318 50486;50487;50488;50489;50490;50491;50492;50493;50494;50495 41954;41955;41956;41957;41958;41959;41960 41957 377 7 0 964200 27780000 SASDLTWDNLK DTPEAGYFAIAVVKKSASDLTWDNLKGKKS VVKKSASDLTWDNLKGKKSCHTAVGRTAGW K S A L K G 1 0 1 2 0 0 0 0 0 0 2 1 0 0 0 2 1 1 0 0 0 0 11 0 1248.5986 P02787 P02787 454 464 TF Serotransferrin yes yes 2 1.2205E-09 168.74 By MS/MS 5.83 3.34 1 1 1 1 1 1 6 122970000 122970000 0 0 11711 399 12319 50496;50497;50498;50499;50500;50501 41961;41962;41963;41964;41965 41962 5 86729000 0 0 SASLHLPK THDIITKFLENEDRRSASLHLPKLSITGTY LENEDRRSASLHLPKLSITGTYDLKSVLGQ R S A P K L 1 0 0 0 0 0 0 0 1 0 2 1 0 0 1 2 0 0 0 0 0 0 8 0 851.4865 P01009 P01009 307 314 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.0079951 96.19 By MS/MS By matching 9.67 0.471 1 2 2 1 40046000 39803000 0 243260 11712 367 12320 50502;50503;50504 41966 41966 1 33100000 0 532040 SASSASSLFSPSSTLFSSSR GRYISAAPGAEAKYRSASSASSLFSPSSTL SSLFSPSSTLFSSSRLRYGMSDVMPSGRSR R S A S R L 2 1 0 0 0 0 0 0 0 0 2 0 0 2 1 11 1 0 0 0 0 0 20 0 1991.9436 Q14671 Q14671 797 816 PUM1 Pumilio homolog 1 yes yes 2 2.327E-13 146 By MS/MS 3.5 1.12 1 1 1 1 4 12459000 0 12459000 0 11713 1309 12321 50505;50506;50507;50508 41967;41968;41969;41970 41967 4 0 4367200 0 SASSGAEGDVSSEREP SESSKERNTPRKEDRSASSGAEGDVSSERE ASSGAEGDVSSEREP_______________ R S A E P - 2 1 0 1 0 0 3 2 0 0 0 0 0 0 1 5 0 0 0 1 0 0 16 1 1563.6649 Q8TEA8 Q8TEA8 194 209 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 2 1.0613E-17 190.36 By MS/MS 6.5 0.5 1 1 2 22835000 0 0 22835000 11714 1664 12322 50509;50510 41971 41971 1 0 0 3944900 SASSLLEQRPK ______________________________ ______________________________ M S A P K G 1 1 0 0 0 1 1 0 0 0 2 1 0 0 1 3 0 0 0 0 0 0 11 1 1214.6619 Q9Y5A9 Q9Y5A9 2 12 YTHDF2 YTH domain-containing family protein 2 yes yes 2 1.2824E-05 147.75 By MS/MS By MS/MS 4.75 2.49 2 1 1 3 1 38558000 0 24981000 13577000 11715 2294 12323 50511;50512;50513;50514 41972;41973;41974;41975 41973 4 0 10583000 2633300 SASVVSVISR ______________________________ ______________________________ M S A S R F 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 3 0 0 10 0 1003.5662 P61803 P61803 2 11 DAD1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 yes yes 2 0.00024908 128.36 By MS/MS By MS/MS By MS/MS 9.8 0.4 1 4 1 1 3 39577000 1576400 6036000 31964000 11716 998 12324;12325 50515;50516;50517;50518;50519 41976;41977;41978;41979;41980 41977 5 2871800 30537000 69909000 SASYKPVFVTEITDDLHFYVQDVETGTQLEK QPVEEVMPVLEEKERSASYKPVFVTEITDD HFYVQDVETGTQLEKLMENMRNDIASHPPV R S A E K L 1 0 0 3 0 2 3 1 1 1 2 2 0 2 1 2 4 0 2 4 0 0 31 1 3558.7406 Q7KZF4 Q7KZF4 679 709 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 1.0778E-51 155.92 By MS/MS 2 0 1 1 4585600 0 0 4585600 11717 1518 12326 50520 41981 41981 1 0 0 1036300 SAVEDEGLK VSAKNALESYAFNMKSAVEDEGLKGKISEA YAFNMKSAVEDEGLKGKISEADKKKVLDKC K S A L K G 1 0 0 1 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 946.46074 P0DMV9;P0DMV8 P0DMV9 551 559 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A yes no 2 0.0098012 88.948 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 190720000 0 63587000 127130000 11718 501 12327 50521;50522;50523;50524 41982;41983 41982 2 0 27161000 24619000 SAVTALWGK ______________________________ LTPEEKSAVTALWGKVNVDEVGGEALGRLL K S A G K V 2 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 1 1 0 1 0 0 9 0 931.51272 P68871 P68871 10 18 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 2 0.0023273 104.44 By MS/MS 5.88 2.93 1 1 1 1 1 1 1 1 8 247260000 247260000 0 0 11719 1081 12328 50525;50526;50527;50528;50529;50530;50531;50532 41984;41985;41986;41987 41984 4 238880000 0 0 SAYGGLQTSSYLMSTR SITSGYSQSSQVFGRSAYGGLQTSSYLMST AYGGLQTSSYLMSTRSFPSYYTSHVQEEQI R S A T R S 1 1 0 0 0 1 0 2 0 0 2 0 1 0 0 4 2 0 2 0 0 0 16 0 1720.809 P07196 P07196 422 437 NEFL Neurofilament light polypeptide yes yes 2 1.09E-08 171.32 By matching By MS/MS By MS/MS 3 0 3 1 1 1 32736000 12167000 8116900 12451000 11720 453 12329 50533;50534;50535 41988;41989 41988 2 14038000 3460200 2415000 SAYNVYVAER KKKELTLLGKPKRPRSAYNVYVAERFQEAK PKRPRSAYNVYVAERFQEAKGDSPQEKLKT R S A E R F 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 2 2 0 0 10 0 1170.5669 Q00059 Q00059 160 169 TFAM Transcription factor A, mitochondrial yes yes 2 2.0057E-16 179.36 By matching By MS/MS By MS/MS 6.5 0.957 1 2 2 1 1 2 3 556880000 18116000 188090000 350670000 11721 1120 12330 50536;50537;50538;50539;50540;50541 41990;41991;41992;41993;41994;41995 41992 6 14513000 107030000 61505000 SAYSSYSAPVSSSLSVR RVHISSVRSGYSTARSAYSSYSAPVSSSLS YSSYSAPVSSSLSVRRSYSSSSGSLMPSLE R S A V R R 2 1 0 0 0 0 0 0 0 0 1 0 0 0 1 8 0 0 2 2 0 0 17 0 1746.8424 P07196 P07196 38 54 NEFL Neurofilament light polypeptide yes yes 2 2.2232E-27 202.18 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 34345000 0 16696000 17649000 11722 453 12331 50542;50543;50544 41996;41997;41998 41996 3 0 6074800 3423000 SCAAAGTECLISGWGNTK PATLNSRVATVSLPRSCAAAGTECLISGWG AAGTECLISGWGNTKSSGSSYPSLLQCLKA R S C T K S 3 0 1 0 2 0 1 3 0 1 1 1 0 0 0 2 2 1 0 0 0 0 18 0 1881.8349 CON__P00761 CON__P00761 116 133 yes yes 2 3.0167E-05 101.62 By MS/MS 9 0 1 1 2055500 2055500 0 0 + 11723 32 12332 50545 41999 41999 1 1153800 0 0 SCAHDWVYE EISLWFKPEELVDYKSCAHDWVYE______ ELVDYKSCAHDWVYE_______________ K S C Y E - 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 9 0 1165.4499 P22392;O60361 P22392 144 152 NME2;NME2P1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase yes no 2 0.0078718 91.906 By MS/MS 8 0 1 1 46218000 46218000 0 0 11724 631 12333 50546 42000 42000 1 39680000 0 0 SCGSSTPDEFPTDIPGTK YKLDDPSCPRPECYRSCGSSTPDEFPTDIP SSTPDEFPTDIPGTKGNFKLVRHVSFVDCP R S C T K G 0 0 0 2 1 0 1 2 0 1 0 1 0 1 3 3 3 0 0 0 0 0 18 0 1894.8255 P41091 P41091 104 121 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 2 0.0012111 86.699 By MS/MS 4 0 1 1 4732700 0 0 4732700 11725 790 12334 50547 42001 42001 1 0 0 773010 SDAAVDTSSEITTK ______________________________ MSDAAVDTSSEITTKDLKEKKEVVEEAENG M S D T K D 2 0 0 2 0 0 1 0 0 1 0 1 0 0 0 3 3 0 0 1 0 0 14 0 1423.6678 P06454 P06454 2 15 PTMA Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1 yes yes 2 5.8429E-08 172 By MS/MS By MS/MS By MS/MS 8.25 0.433 3 1 2 1 1 24195000 13361000 1902700 8931500 11726 441 12335 50548;50549;50550;50551 42002;42003;42004 42002 3 10636000 865640 1369300 SDAEDGEGTVASWELR RKLRIFISNTFNPAKSDAEDGEGTVASWEL DAEDGEGTVASWELRVEGRLLEDSALSKYD K S D L R V 2 1 0 2 0 0 3 2 0 0 1 0 0 0 0 2 1 1 0 1 0 0 16 0 1720.754 Q96GM5 Q96GM5 195 210 SMARCD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 yes yes 2 4.1509E-05 134.98 By matching By MS/MS 4 0 2 1 1 5270300 3364000 0 1906300 11727 1791 12336 50552;50553 42005 42005 1 2624500 0 311360 SDAGLESDTAMK ______________________________ KLRSDAGLESDTAMKKGETLRKQTEEKEKK R S D M K K 2 0 0 2 0 0 1 1 0 0 1 1 1 0 0 2 1 0 0 0 0 0 12 0 1223.534 Q9NR30 Q9NR30 7 18 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00082761 120.09 By MS/MS By matching 2.33 0.471 2 1 2 1 19477000 0 11561000 7916100 11728 2038 12337;12338 50554;50555;50556 42006;42007 42007 694 2 0 5205900 1535300 SDAGNLNFEFQVAK IVKEPTSHDNKDICKSDAGNLNFEFQVAKK KSDAGNLNFEFQVAKKEGSWWHCNSCSLKN K S D A K K 2 0 2 1 0 1 1 1 0 0 1 1 0 2 0 1 0 0 0 1 0 0 14 0 1538.7365 P49792 P49792 1337 1350 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 0.011192 79.311 By MS/MS 1 0 1 1 8843100 0 0 8843100 11729 871 12339 50557 42008 42008 1 0 0 1905400 SDALETLGFLNHYQMK KSERSSSGLLEWESKSDALETLGFLNHYQM DALETLGFLNHYQMKNPNGPYPYTLKLCFS K S D M K N 1 0 1 1 0 1 1 1 1 0 3 1 1 1 0 1 1 0 1 0 0 0 16 0 1865.8982 P14866 P14866 553 568 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2;3 3.9196E-74 240.85 By MS/MS By MS/MS By MS/MS 3.88 1.65 2 3 6 8 1 4 2 2 9 15 868000000 29099000 136660000 702230000 11730 565 12340;12341 50558;50559;50560;50561;50562;50563;50564;50565;50566;50567;50568;50569;50570;50571;50572;50573;50574;50575;50576;50577;50578;50579;50580;50581;50582;50583 42009;42010;42011;42012;42013;42014;42015;42016;42017;42018;42019;42020;42021;42022;42023;42024;42025;42026;42027;42028 42012 250 20 22703000 49174000 128530000 SDAYYCTGDVTAWTK ALLPCEECSGQLVFKSDAYYCTGDVTAWTK SDAYYCTGDVTAWTKCMVKTQTPNRKEWVT K S D T K C 2 0 0 2 1 0 0 1 0 0 0 1 0 0 0 1 3 1 2 1 0 0 15 0 1736.7352 P09874 P09874 306 320 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.00028666 126.76 By MS/MS By MS/MS 2 0 2 1 1 52403000 0 4536900 47866000 11731 492 12342 50584;50585 42029;42030 42030 2 0 2043000 10817000 SDDDGFEIVPIEDPAK SWEPLRGKKRSRGPKSDDDGFEIVPIEDPA DDDGFEIVPIEDPAKHRILDPEGLALGAVI K S D A K H 1 0 0 4 0 0 2 1 0 2 0 1 0 1 2 1 0 0 0 1 0 0 16 0 1745.7996 Q8IY81 Q8IY81 644 659 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 3.4347E-05 138.24 By matching By MS/MS 2.75 0.829 2 1 1 1 3 17746000 0 1119600 16627000 11732 1590 12343 50586;50587;50588;50589 42031;42032 42032 2 0 504150 3442300 SDEGQLSPATR HQSIEEFRAKIERARSDEGQLSPATRGAYR ERARSDEGQLSPATRGAYRDCLGRLDLQYA R S D T R G 1 1 0 1 0 1 1 1 0 0 1 0 0 0 1 2 1 0 0 0 0 0 11 0 1159.5469 Q15149 Q15149 714 724 PLEC Plectin yes yes 2 0.0090244 93.111 By MS/MS By matching 2 0.816 1 1 1 2 1 9406400 0 4145800 5260600 11733 1348 12344 50590;50591;50592 42033 42033 1 0 1977500 1020300 SDFDEFER ______________________________ ______________________________ M S D E R Q 0 1 0 2 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 1043.4196 P26368 P26368 2 9 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2 3.8585E-05 148.38 By matching By MS/MS 4 0 2 1 1 7785200 1208700 0 6576500 11734 668 12345 50593;50594 42034 42034 1 942990 0 1074200 SDFFELLSNHHLDSQSR KKEKEDSKTRGEKIKSDFFELLSNHHLDSQ FFELLSNHHLDSQSRWSKVKDKVESDPRYK K S D S R W 0 1 1 2 0 1 1 0 2 0 3 0 0 2 0 4 0 0 0 0 0 0 17 0 2030.9446 O14776 O14776 797 813 TCERG1 Transcription elongation regulator 1 yes yes 3;4 0.00021888 92.211 By MS/MS 2.17 1.07 2 2 1 1 6 32372000 0 0 32372000 11735 145 12346 50595;50596;50597;50598;50599;50600 42035;42036;42037 42035 3 0 0 6943100 SDGALLLGASSLSGR APACMERQLEAARYRSDGALLLGASSLSGR SDGALLLGASSLSGRCWAGSLWLFKDPCAA R S D G R C 2 1 0 1 0 0 0 3 0 0 4 0 0 0 0 4 0 0 0 0 0 0 15 0 1402.7416 Q9BQA1 Q9BQA1 38 52 WDR77 Methylosome protein 50 yes yes 2 0.0011872 96.64 By MS/MS 6 0 1 1 3120200 0 3120200 0 11736 1882 12347 50601 42038 42038 1 0 1080100 0 SDGEMVLPGFPDADSFVK STREPRVLSATSATKSDGEMVLPGFPDADS EMVLPGFPDADSFVKFALGSVVAVTKASGG K S D V K F 1 0 0 3 0 0 1 2 0 0 1 1 1 2 2 2 0 0 0 2 0 0 18 0 1909.8768 Q01780 Q01780 20 37 EXOSC10 Exosome component 10 yes yes 2 4.2327E-05 99.844 By MS/MS 2 0 1 1 3935300 0 0 3935300 11737 1138 12348 50602 42039 42039 1 0 0 889310 SDGGYTYDTSDLAAIK IVFVPGCSIPLTIVKSDGGYTYDTSDLAAI DGGYTYDTSDLAAIKQRLFEEKADMIIYVV K S D I K Q 2 0 0 3 0 0 0 2 0 1 1 1 0 0 0 2 2 0 2 0 0 0 16 0 1675.7577 P54136 P54136 378 393 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.0027016 87.641 By MS/MS 3 0 1 1 7267500 0 0 7267500 11738 927 12349 50603 42040 42040 1 0 0 1409600 SDGIYIINLK TNLDFQMEQYIYKRKSDGIYIINLKRTWEK IYKRKSDGIYIINLKRTWEKLLLAARAIVA K S D L K R 0 0 1 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 0 10 0 1134.6285 P08865 P08865 43 52 RPSA 40S ribosomal protein SA yes yes 2 0.0046772 98.629 By MS/MS 6 0 1 1 16465000 0 16465000 0 11739 480 12350 50604 42041 42041 1 0 5699800 0 SDGIYIINLKR TNLDFQMEQYIYKRKSDGIYIINLKRTWEK YKRKSDGIYIINLKRTWEKLLLAARAIVAI K S D K R T 0 1 1 1 0 0 0 1 0 3 1 1 0 0 0 1 0 0 1 0 0 0 11 1 1290.7296 P08865 P08865 43 53 RPSA 40S ribosomal protein SA yes yes 2;3 3.8209E-05 149.65 By MS/MS 6.33 0.471 2 1 3 26680000 0 26680000 0 11740 480 12351 50605;50606;50607 42042;42043 42043 2 0 9354400 0 SDGPYALVLVPTR PVVQSLQAMESKIQRSDGPYALVLVPTREL QRSDGPYALVLVPTRELALQSFDTVQKLLK R S D T R E 1 1 0 1 0 0 0 1 0 0 2 0 0 0 2 1 1 0 1 2 0 0 13 0 1386.7507 Q9H8H2 Q9H8H2 303 315 DDX31 Probable ATP-dependent RNA helicase DDX31 yes yes 2 0.0053301 99.522 By MS/MS 3 0 1 1 3910800 0 3910800 0 11741 1996 12352 50608 42044 42044 1 0 1667200 0 SDHPGISITDLSK SAYMLWLNASREKIKSDHPGISITDLSKKA IKSDHPGISITDLSKKAGEIWKGMSKEKKE K S D S K K 0 0 0 2 0 0 0 1 1 2 1 1 0 0 1 3 1 0 0 0 0 0 13 0 1368.6885 Q08945 Q08945 567 579 SSRP1 FACT complex subunit SSRP1 yes yes 2;3 0.00030255 136.96 By MS/MS By MS/MS 2.57 0.904 1 2 3 1 2 5 162910000 0 17540000 145370000 11742 1186 12353 50609;50610;50611;50612;50613;50614;50615 42045;42046;42047;42048;42049;42050 42046 6 0 7592700 28403000 SDIDEIVLVGGSTR MKPVQKVLEDSDLKKSDIDEIVLVGGSTRI KSDIDEIVLVGGSTRIPKIQQLVKEFFNGK K S D T R I 0 1 0 2 0 0 1 2 0 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1459.7518 P11021 P11021 354 367 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.002519 99.215 By matching By MS/MS By MS/MS 3 0 3 1 1 1 11339000 1418000 3102100 6818500 11743 516 12354 50616;50617;50618 42051;42052 42051 2 1636000 1322400 1322500 SDIGEVILVGGMTR IAPCQKAMQDAEVSKSDIGEVILVGGMTRM KSDIGEVILVGGMTRMPKVQQTVQDLFGRA K S D T R M 0 1 0 1 0 0 1 3 0 2 1 0 1 0 0 1 1 0 0 2 0 0 14 0 1445.7548 P38646 P38646 378 391 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00037762 130.01 By MS/MS 3 0 1 1 7413300 0 0 7413300 11744 774 12355 50619 42053 42053 1 0 0 1437800 SDIQDLLESVR QKVAELYSIHNSGDKSDIQDLLESVRLDKE SGDKSDIQDLLESVRLDKEKAETLASSLQE K S D V R L 0 1 0 2 0 1 1 0 0 1 2 0 0 0 0 2 0 0 0 1 0 0 11 0 1273.6514 Q69YQ0 Q69YQ0 603 613 SPECC1L Cytospin-A yes yes 2 0.0003529 120.99 By MS/MS 2 0 1 1 3241400 0 0 3241400 11745 1469 12356 50620 42054 42054 1 0 0 732490 SDKTEEIAEEEETVFPK LRKQTEEKEKKEKPKSDKTEEIAEEEETVF KTEEIAEEEETVFPKAKQVKKKAEPSEVDM K S D P K A 1 0 0 1 0 0 6 0 0 1 0 2 0 1 1 1 2 0 0 1 0 0 17 1 1979.9211 Q9NR30 Q9NR30 38 54 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 2.3758E-08 169.4 By MS/MS 2 0 2 2 18672000 0 0 18672000 11746 2038 12357 50621;50622 42055;42056 42055 2 0 0 4219500 SDLEMQYETLQEELMALK INGLRQVLDNLTMEKSDLEMQYETLQEELM EMQYETLQEELMALKKNHKEEMSQLTGQNS K S D L K K 1 0 0 1 0 2 4 0 0 0 4 1 2 0 0 1 1 0 1 0 0 0 18 0 2170.0174 P35527;CON__P35527 P35527 272 289 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 1.7879E-79 243.11 By MS/MS By MS/MS By MS/MS 5.15 2.65 5 2 8 9 5 3 1 7 8 24 2 22 565180000 107160000 1070100 456950000 + 11747 750 12358;12359;12360 50623;50624;50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636;50637;50638;50639;50640;50641;50642;50643;50644;50645;50646;50647;50648;50649;50650;50651;50652;50653;50654;50655;50656;50657;50658;50659;50660;50661;50662;50663;50664;50665;50666;50667;50668;50669;50670 42057;42058;42059;42060;42061;42062;42063;42064;42065;42066;42067;42068;42069;42070;42071;42072;42073;42074;42075;42076;42077;42078;42079;42080;42081;42082;42083;42084;42085;42086;42087;42088;42089;42090;42091;42092;42093;42094;42095;42096;42097;42098;42099;42100;42101;42102;42103;42104;42105;42106;42107 42086 340;341 51 86001000 457200 84529000 SDLEMQYETLQEELMALKK INGLRQVLDNLTMEKSDLEMQYETLQEELM MQYETLQEELMALKKNHKEEMSQLTGQNSG K S D K K N 1 0 0 1 0 2 4 0 0 0 4 2 2 0 0 1 1 0 1 0 0 0 19 1 2298.1123 P35527;CON__P35527 P35527 272 290 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3;4 5.2738E-97 259 By MS/MS By MS/MS By MS/MS 4.93 2.55 9 9 12 11 12 9 6 9 11 27 8 53 2115600000 783070000 43841000 1288700000 + 11748 750 12361;12362;12363 50671;50672;50673;50674;50675;50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692;50693;50694;50695;50696;50697;50698;50699;50700;50701;50702;50703;50704;50705;50706;50707;50708;50709;50710;50711;50712;50713;50714;50715;50716;50717;50718;50719;50720;50721;50722;50723;50724;50725;50726;50727;50728;50729;50730;50731;50732;50733;50734;50735;50736;50737;50738;50739;50740;50741;50742;50743;50744;50745;50746;50747;50748;50749;50750;50751;50752;50753;50754;50755;50756;50757;50758 42108;42109;42110;42111;42112;42113;42114;42115;42116;42117;42118;42119;42120;42121;42122;42123;42124;42125;42126;42127;42128;42129;42130;42131;42132;42133;42134;42135;42136;42137;42138;42139;42140;42141;42142;42143;42144;42145;42146;42147;42148;42149;42150;42151;42152;42153;42154;42155;42156;42157;42158;42159;42160;42161;42162;42163;42164;42165;42166;42167;42168;42169;42170;42171;42172;42173;42174;42175;42176;42177;42178;42179;42180;42181;42182;42183;42184;42185;42186;42187;42188;42189;42190;42191;42192;42193;42194;42195;42196;42197;42198;42199;42200 42162 340;341 92 605130000 18550000 245640000 SDLFFHDYSIAPLFVQENYIHVKPVAAGGDMK FAAGEETAHMSLVDKSDLFFHDYSIAPLFV NYIHVKPVAAGGDMKKHLMLLSRAADSICD K S D M K K 3 0 1 3 0 1 1 2 2 2 2 2 1 3 2 2 0 0 2 3 0 0 32 1 3607.781 P35251 P35251 871 902 RFC1 Replication factor C subunit 1 yes yes 4 1.5733E-20 98.839 By MS/MS 2 0 1 1 8585300 0 0 8585300 11749 746 12364 50759 42201 42201 1 0 0 1940100 SDLIDQMNASGPIK EKVISDKDLELLLDRSDLIDQMNASGPIKE RSDLIDQMNASGPIKEKMGIFKILENSEDS R S D I K E 1 0 1 2 0 1 0 1 0 2 1 1 1 0 1 2 0 0 0 0 0 0 14 0 1487.729 Q9NRZ9 Q9NRZ9 804 817 HELLS Lymphoid-specific helicase yes yes 2 0.0019482 103.08 By MS/MS 2 0 1 1 4964800 0 0 4964800 11750 2050 12365 50760 42202 42202 1 0 0 1122000 SDLIEVATR LKSCDGNQELLNFLRSDLIEVATRLQKGGL LLNFLRSDLIEVATRLQKGGLGYVEETSEF R S D T R L 1 1 0 1 0 0 1 0 0 1 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1002.5346 Q9UIG0 Q9UIG0 1057 1065 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0041427 98.582 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 1 3 50284000 1502600 5222500 43559000 11751 2164 12366 50761;50762;50763;50764;50765 42203;42204;42205 42204 3 1502600 2552700 9319900 SDLLLEGFNNYR HIFYQLLSGAGEHLKSDLLLEGFNNYRFLS HLKSDLLLEGFNNYRFLSNGYIPIPGQQDK K S D Y R F 0 1 2 1 0 0 1 1 0 0 3 0 0 1 0 1 0 0 1 0 0 0 12 0 1439.7045 P35580 P35580 297 308 MYH10 Myosin-10 yes yes 2 2.4838E-08 171.36 By MS/MS By matching 1.67 0.471 1 2 2 1 56534000 0 54526000 2007600 11752 753 12367 50766;50767;50768 42206;42207 42206 2 0 26561000 453680 SDLYVSDAFHK SPEKSRLPGIVAEGRSDLYVSDAFHKAFLE AEGRSDLYVSDAFHKAFLEVNEEGSEAAAS R S D H K A 1 0 0 2 0 0 0 0 1 0 1 1 0 1 0 2 0 0 1 1 0 0 11 0 1280.6037 CON__P41361 CON__P41361 393 403 yes yes 2;3 0.0048605 101.65 By MS/MS By MS/MS 3.8 1.89 1 2 2 2 2 1 3 7 94281000 13969000 0 80312000 + 11753 67 12368 50769;50770;50771;50772;50773;50774;50775;50776;50777;50778 42208;42209;42210;42211;42212;42213 42208 6 19332000 0 15598000 SDMYILNESLTDPAIVK STRTEDFIIDTLELRSDMYILNESLTDPAI MYILNESLTDPAIVKVFHGADSDIEWLQKD R S D V K V 1 0 1 2 0 0 1 0 0 2 2 1 1 0 1 2 1 0 1 1 0 0 17 0 1907.955 Q01780 Q01780 347 363 EXOSC10 Exosome component 10 yes yes 2 1.0111E-05 114.72 By MS/MS 2 0 1 1 3120900 0 3120900 0 11754 1138 12369 50779 42214 42214 1 0 1405400 0 SDPDLVAQNIDVVLNR RYDGSQQALDLKGLRSDPDLVAQNIDVVLN DPDLVAQNIDVVLNRRSCMAATLRIIEENI R S D N R R 1 1 2 3 0 1 0 0 0 1 2 0 0 0 1 1 0 0 0 3 0 0 16 0 1766.9163 Q9UBU9 Q9UBU9 234 249 NXF1 Nuclear RNA export factor 1 yes yes 2 6.2044E-05 142.1 By MS/MS 3 0 1 1 13927000 0 0 13927000 11755 2136 12370 50780 42215 42215 1 0 0 2701100 SDPFVPPAASSEPLSTPWNELNYVGGR QGRFQDRSNPGTFMRSDPFVPPAASSEPLS PLSTPWNELNYVGGRGLGGPSPSRPPPSLF R S D G R G 2 1 2 1 0 0 2 2 0 0 2 0 0 1 5 4 1 1 1 2 0 0 27 0 2886.3824 O43823 O43823 207 233 AKAP8 A-kinase anchor protein 8 yes yes 3 1.8718E-05 55.994 By MS/MS 2.5 0.5 1 1 2 2403800 0 2403800 0 11756 215 12371 50781;50782 42216 42216 1 0 1070800 0 SDPGLLTNTMDVFVK GLMYSIMVHALRAFRSDPGLLTNTMDVFVK SDPGLLTNTMDVFVKEPSFDWKNFEQKMLK R S D V K E 0 0 1 2 0 0 0 1 0 0 2 1 1 1 1 1 2 0 0 2 0 0 15 0 1635.8178 P78527 P78527 3993 4007 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00028164 147.26 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 31623000 0 5946400 25677000 11757 1089 12372 50783;50784;50785;50786;50787 42217;42218;42219 42219 3 0 2850700 5555600 SDPLLIGIPTSENPFK KASADLMSYCEEHARSDPLLIGIPTSENPF DPLLIGIPTSENPFKDKKTCIIL_______ R S D F K D 0 0 1 1 0 0 1 1 0 2 2 1 0 1 3 2 1 0 0 0 0 0 16 0 1726.9142 Q9UBI6 Q9UBI6 49 64 GNG12 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12 yes yes 2 0.0011056 94.767 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 10722000 0 1916600 8805700 11758 2131 12373 50788;50789;50790 42220;42221;42222 42221 3 0 9696200 9752600 SDQDYILK SISVNNCVCHFSPLKSDQDYILKEGDLVKI CHFSPLKSDQDYILKEGDLVKIDLGVHVDG K S D L K E 0 0 0 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 1 0 0 0 8 0 980.48148 Q9UQ80 Q9UQ80 94 101 PA2G4 Proliferation-associated protein 2G4 yes yes 2 9.886E-05 147.06 By matching By MS/MS By MS/MS 3 1.6 2 1 1 1 2 1 4 2 313600000 109030000 53468000 151110000 11759 2220 12374 50791;50792;50793;50794;50795;50796;50797 42223;42224 42223 2 109030000 14456000 21303000 SDQEAKPSTEDLGDKK ______________________________ DQEAKPSTEDLGDKKEGEYIKLKVIGQDSS M S D K K E 1 0 0 3 0 1 2 1 0 0 1 3 0 0 1 2 1 0 0 0 0 0 16 2 1746.8272 P63165 P63165 2 17 SUMO1 Small ubiquitin-related modifier 1 yes yes 3 0.020269 46.249 By matching By MS/MS 3 0 2 1 1 6220900 2675800 3545100 0 11760 1061 12375 50798;50799 42225 42225 1 3087200 1511300 0 SDQVNGVLVLSLLDK AAEEPSGAGSEELIKSDQVNGVLVLSLLDK SDQVNGVLVLSLLDKIIGAVDQIQLTQAQL K S D D K I 0 0 1 2 0 1 0 1 0 0 4 1 0 0 0 2 0 0 0 3 0 0 15 0 1598.8879 Q6NZI2 Q6NZI2 46 60 PTRF Polymerase I and transcript release factor yes yes 2 0.02026 67.997 By MS/MS 4 0 1 1 5349400 0 0 5349400 11761 1483 12376 50800 42226 42226 1 0 0 873740 SDSEKLNLDSIIGR ______________________________ MSDSEKLNLDSIIGRLLEVQGSRPGKNVQL M S D G R L 0 1 1 2 0 0 1 1 0 2 2 1 0 0 0 3 0 0 0 0 0 0 14 1 1545.7999 P62136 P62136 2 15 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2 3.9333E-05 155.99 By MS/MS 5.5 0.5 1 1 2 9885000 0 9885000 0 11762 1006 12377 50801;50802 42227 42227 1 0 3317000 0 SDSFENPVLQQHFR GKMKAIVEKLRFTYRSDSFENPVLQQHFRN RSDSFENPVLQQHFRNLEALALDLMEPEQA R S D F R N 0 1 1 1 0 2 1 0 1 0 1 0 0 2 1 2 0 0 0 1 0 0 14 0 1702.8063 P12956 P12956 475 488 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 1.2497E-89 259.1 By MS/MS By MS/MS By MS/MS 3.8 1.87 1 3 5 1 1 2 2 3 6 6 486310000 122540000 132820000 230950000 11763 541 12378 50803;50804;50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815;50816;50817 42228;42229;42230;42231;42232;42233;42234;42235;42236;42237;42238 42232 11 139650000 55398000 43883000 SDSGEQNYGER ______________________________ ______________________________ M S D E R E 0 1 1 1 0 1 2 2 0 0 0 0 0 0 0 2 0 0 1 0 0 0 11 0 1240.4956 P62995 P62995 2 12 TRA2B Transformer-2 protein homolog beta yes yes 2 8.3041E-16 128.27 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 5254900 0 0 5254900 11764 1055 12379 50818;50819;50820 42239;42240 42239 2 0 0 766310 SDSGKPYYYNSQTK PAEQLLSKCPWKEYKSDSGKPYYYNSQTKE KSDSGKPYYYNSQTKESRWAKPKELEDLEG K S D T K E 0 0 1 1 0 1 0 1 0 0 0 2 0 0 1 3 1 0 3 0 0 0 14 1 1636.7369 O75400 O75400 192 205 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 3 0.066003 41.014 By MS/MS 2 0 1 1 2180200 0 2180200 0 11765 258 12380 50821 42241 42241 1 0 981790 0 SDSVTDSGPTFNYLLDMPLWYLTK EEENEESDNEKETEKSDSVTDSGPTFNYLL TFNYLLDMPLWYLTKEKKDELCRLRNEKEQ K S D T K E 0 0 1 3 0 0 0 1 0 0 4 1 1 1 2 3 3 1 2 1 0 0 24 0 2762.3149 P11388 P11388 1115 1138 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.8788E-11 102.78 By MS/MS 2 0 2 2 19197000 0 0 19197000 11766 524 12381 50822;50823 42242;42243 42243 2 0 0 4338300 SDSYVELSQYR ______________________________ KALRSDSYVELSQYRDQHFRGDNEEQEKLL R S D Y R D 0 1 0 1 0 1 1 0 0 0 1 0 0 0 0 3 0 0 2 1 0 0 11 0 1345.615 P52298 P52298 11 21 NCBP2 Nuclear cap-binding protein subunit 2 yes yes 2 0.00079679 101.9 By MS/MS 8 0 1 1 12992000 0 0 12992000 11767 905 12382 50824 42244 42244 0 0 0 1991800 SDTSLTWNSVK DRPVEGYLAVAVVRRSDTSLTWNSVKGKKS VVRRSDTSLTWNSVKGKKSCHTAVDRTAGW R S D V K G 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 3 2 1 0 1 0 0 11 0 1236.5986 P02788 P02788 463 473 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 4.788E-55 214.93 By MS/MS By matching 4.9 2.91 1 2 1 1 1 1 1 1 1 9 1 240180000 233960000 0 6226000 11768 400 12383 50825;50826;50827;50828;50829;50830;50831;50832;50833;50834 42245;42246;42247;42248;42249;42250;42251;42252;42253 42249 9 261570000 0 1407000 SDVEAIFSK SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG TLVVKKSDVEAIFSKYGKIVGCSVHKGFAF K S D S K Y 1 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 0 0 0 1 0 0 9 0 994.49713 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 31 39 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 0.00063205 133.98 By MS/MS By MS/MS By MS/MS 5.6 0.49 2 3 1 2 2 339360000 22483000 113060000 203820000 11769 467 12384 50835;50836;50837;50838;50839 42254;42255;42256;42257;42258 42256 5 29937000 37185000 29381000 SDVETIFSK SRVFIGNLNTALVKKSDVETIFSKYGRVAG TALVKKSDVETIFSKYGRVAGCSVHKGYAF K S D S K Y 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 2 1 0 0 1 0 0 9 0 1024.5077 Q9UKM9 Q9UKM9 36 44 RALY RNA-binding protein Raly yes yes 2 0.036592 75.378 By MS/MS By MS/MS 6 0 2 1 1 19531000 0 10131000 9400300 11770 2181 12385 50840;50841 42259;42260 42259 2 0 3507000 1406400 SDVMYTDWKK LGEFYEALDCLCIPRSDVMYTDWKKDKCEP LCIPRSDVMYTDWKKDKCEPLEKQHEKERK R S D K K D 0 0 0 2 0 0 0 0 0 0 0 2 1 0 0 1 1 1 1 1 0 0 10 1 1271.5856 P19652 P19652 171 180 ORM2 Alpha-1-acid glycoprotein 2 yes yes 2 0.010708 95.502 By MS/MS 9 0 1 1 5399800 5399800 0 0 11771 611 12386 50842 42261 42261 1 3031000 0 0 SDVQIHVPTFTFR YGMKTKNIPVYECERSDVQIHVPTFTFRVT ERSDVQIHVPTFTFRVTVGDITCTGEGTSK R S D F R V 0 1 0 1 0 1 0 0 1 1 0 0 0 2 1 1 2 0 0 2 0 0 13 0 1545.794 O75569 O75569 57 69 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 3 0.0018655 87.989 By MS/MS By MS/MS 6 0 2 1 1 14180000 0 6116300 8063500 11772 273 12387 50843;50844 42262;42263 42263 2 0 2117300 1206400 SDVVYTDWK LGEFYEALDCLRIPKSDVVYTDWKKDKCEP CLRIPKSDVVYTDWKKDKCEPLEKQHEKER K S D W K K 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 2 0 0 9 0 1111.5186 P02763 P02763 171 179 ORM1 Alpha-1-acid glycoprotein 1 yes yes 2 0.0023273 104.44 By MS/MS 9 0 1 1 33618000 33618000 0 0 11773 394 12388 50845 42264 42264 1 18870000 0 0 SDVVYTDWKK LGEFYEALDCLRIPKSDVVYTDWKKDKCEP LRIPKSDVVYTDWKKDKCEPLEKQHEKERK K S D K K D 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 1 1 1 1 2 0 0 10 1 1239.6136 P02763 P02763 171 180 ORM1 Alpha-1-acid glycoprotein 1 yes yes 2 0.041941 80.755 By MS/MS 9 0 1 1 11750000 11750000 0 0 11774 394 12389 50846 42265 42265 1 6595200 0 0 SDYAQLLEDMQNAFR MKFKDPLKDGEAKIKSDYAQLLEDMQNAFR SDYAQLLEDMQNAFRSLED___________ K S D F R S 2 1 1 2 0 2 1 0 0 0 2 0 1 1 0 1 0 0 1 0 0 0 15 0 1799.8148 P38606 P38606 599 613 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 0.0027778 88.187 By MS/MS 3 0 1 1 3559100 0 0 3559100 11775 773 12390 50847 42266 42266 1 0 0 690290 SDYDGIGSR DRGSGSRGRFDDRGRSDYDGIGSRGDRSGF FDDRGRSDYDGIGSRGDRSGFGKFERGGNS R S D S R G 0 1 0 2 0 0 0 2 0 1 0 0 0 0 0 2 0 0 1 0 0 0 9 0 968.41994 O00571 O00571 102 110 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 2.6255E-06 128.69 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 84242000 0 21579000 62663000 11776 131 12391 50848;50849;50850;50851 42267;42268 42267 1 0 9240700 12134000 SDYDMVDYLNELR VLNTLQQASQAQVDKSDYDMVDYLNELRES DKSDYDMVDYLNELRESCLEAYTGIVQGLK K S D L R E 0 1 1 3 0 0 1 0 0 0 2 0 1 0 0 1 0 0 2 1 0 0 13 0 1631.7137 Q14974 Q14974 750 762 KPNB1 Importin subunit beta-1 yes yes 2 0.00030053 130.01 By MS/MS 2.5 0.5 1 1 2 9270700 0 0 9270700 11777 1325 12392 50852;50853 42269;42270 42269 2 0 0 1975900 SEAANGNLDFVLSFLK GCLSDSDMFSQAGLRSEAANGNLDFVLSFL EAANGNLDFVLSFLKSNTLPISLQSIRSSL R S E L K S 2 0 2 1 0 0 1 1 0 0 3 1 0 2 0 2 0 0 0 1 0 0 16 0 1723.8781 P42704 P42704 514 529 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 5.1578E-05 111.96 By MS/MS 2 0 1 1 12802000 0 0 12802000 11778 808 12393 50854 42271 42271 1 0 0 2893000 SEAEEAITSFNGHKPPGSSEPITVK TGLSRGVAFIRFDKRSEAEEAITSFNGHKP NGHKPPGSSEPITVKFAANPNQNKNVALLS R S E V K F 2 0 1 0 0 0 4 2 1 2 0 2 0 1 3 4 2 0 0 1 0 0 25 1 2611.2766 Q15717 Q15717 158 182 ELAVL1 ELAV-like protein 1 yes yes 3;4 7.8626E-09 88.168 By MS/MS By MS/MS 5.75 0.433 1 3 2 2 129070000 0 44889000 84179000 11779 1380 12394 50855;50856;50857;50858 42272;42273;42274;42275;42276 42272 4 0 15539000 12485000 SEAGEATTTTTTTLPQAPTEAAAAAPQDPAPK ______________________________ PTEAAAAAPQDPAPKSPVGSGAPQAAAPAP M S E P K S 9 0 0 1 0 2 3 1 0 0 1 1 0 0 5 1 8 0 0 0 0 0 32 0 3094.4942 P16989 P16989 2 33 YBX3 Y-box-binding protein 3 yes yes 3 5.53E-10 64.686 By MS/MS By MS/MS 4.75 0.829 2 1 1 3 1 38291000 0 19001000 19290000 11780 581 12395 50859;50860;50861;50862 42277;42278 42278 2 0 6073100 3150600 SEAHTADGISIR KKAAVWEITGAEFSKSEAHTADGISIRFPR FSKSEAHTADGISIRFPRCTRIRDDKDWKS K S E I R F 2 1 0 1 0 0 1 1 1 2 0 0 0 0 0 2 1 0 0 0 0 0 12 0 1255.6157 P49916 P49916 792 803 LIG3 DNA ligase 3 yes yes 2;3 0.00052304 107.97 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 22130000 0 4273100 17857000 11781 874 12396 50863;50864;50865;50866;50867 42279;42280;42281;42282 42280 4 0 1924200 4003500 SEASLHPVLMSEAPWNTR SFQAILDHTYKMHVKSEASLHPVLMSEAPW SLHPVLMSEAPWNTRAKREKLTELMFEHYN K S E T R A 2 1 1 0 0 0 2 0 1 0 2 0 1 0 2 3 1 1 0 1 0 0 18 0 2023.9786 O96019 O96019 113 130 ACTL6A Actin-like protein 6A yes yes 2;3 1.9926E-79 242.4 By MS/MS By MS/MS 4.4 0.8 1 1 3 1 4 80432000 0 21468000 58964000 11782 354 12397 50868;50869;50870;50871;50872 42283;42284;42285 42285 3 0 5533700 8501700 SEAVGMSNQTDLLALGTAVGSILLYSTVK ARLQAKESPQRKKRKSEAVGMSNQTDLLAL LGTAVGSILLYSTVKGELHSKLISGGHDNR K S E V K G 3 0 1 1 0 1 1 3 0 1 5 1 1 0 0 4 3 0 1 3 0 0 29 0 2937.5369 Q15061 Q15061 85 113 WDR43 WD repeat-containing protein 43 yes yes 3 0.016807 25.499 By MS/MS 2.5 0.5 1 1 2 2405100 0 0 2405100 11783 1343 12398 50873;50874 42286 42286 1 0 0 507900 SEAVVEYVFSGSR QKAKQFLPFLQRAGRSEAVVEYVFSGSRLK GRSEAVVEYVFSGSRLKLYLPKETCLITFL R S E S R L 1 1 0 0 0 0 2 1 0 0 0 0 0 1 0 3 0 0 1 3 0 0 13 0 1428.6885 Q7KZF4 Q7KZF4 527 539 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 1.7953E-07 169.99 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 37144000 0 11809000 25336000 11784 1518 12399 50875;50876;50877;50878;50879 42287;42288 42288 2 0 5346000 5390100 SEDFSLPAYMDR ISTSVCVRAHESVVKSEDFSLPAYMDRRDH VVKSEDFSLPAYMDRRDHPLPEVAHVKHLS K S E D R R 1 1 0 2 0 0 1 0 0 0 1 0 1 1 1 2 0 0 1 0 0 0 12 0 1429.6184 P13073 P13073 30 41 COX4I1 Cytochrome c oxidase subunit 4 isoform 1, mitochondrial yes yes 2 0.00015443 135.55 By MS/MS 8 0 1 1 4594100 0 0 4594100 11785 543 12400 50880 42289 42289 1 0 0 704320 SEDLDNSIDKTEAGIK ELEAINKRVKDTMARSEDLDNSIDKTEAGI EDLDNSIDKTEAGIKELQKSMERWKNMEKE R S E I K E 1 0 1 3 0 0 2 1 0 2 1 2 0 0 0 2 1 0 0 0 0 0 16 1 1733.8319 Q9UQE7 Q9UQE7 880 895 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 4.6504E-46 224.42 By MS/MS By MS/MS 2 0.943 3 4 1 1 3 6 218400000 0 19855000 198550000 11786 2222 12401 50881;50882;50883;50884;50885;50886;50887;50888;50889 42290;42291;42292;42293;42294;42295;42296 42292 7 0 9015400 43704000 SEDLLDYGPFR SRNVESYTKLGNPTRSEDLLDYGPFRDVPA NPTRSEDLLDYGPFRDVPAYSQDTFKVHYE R S E F R D 0 1 0 2 0 0 1 1 0 0 2 0 0 1 1 1 0 0 1 0 0 0 11 0 1310.6143 P04843 P04843 194 204 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.00032805 128.36 By MS/MS 3 0 1 1 4550400 0 0 4550400 11787 419 12402 50890 42297 42297 1 0 0 882560 SEDSSGAAGLSGLHR EDKLKREEEKREAEKSEDSSGAAGLSGLHR SEDSSGAAGLSGLHRTYSQDCSFKNSMYHV K S E H R T 2 1 0 1 0 0 1 3 1 0 2 0 0 0 0 4 0 0 0 0 0 0 15 0 1442.675 Q86U86 Q86U86 931 945 PBRM1 Protein polybromo-1 yes yes 2 4.9101E-108 268.58 By MS/MS 1 0 1 1 8168400 0 0 8168400 11788 1545 12403 50891 42298 42298 1 0 0 1760000 SEDSTKDDIDLDALAAEIEGAGAAK ______________________________ LDALAAEIEGAGAAKEQEPQKSKGKKKKEK K S E A K E 6 0 0 5 0 0 3 2 0 2 2 2 0 0 0 2 1 0 0 0 0 0 25 1 2504.1766 O60841 O60841 9 33 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 2.8184E-16 104.53 By MS/MS 2 0.816 1 1 1 3 37947000 0 0 37947000 11789 236 12404 50892;50893;50894 42299;42300 42300 2 0 0 8285500 SEDVWLEAAR VARNLIMKGTEMCPKSEDVWLEAARLQPGD EMCPKSEDVWLEAARLQPGDTAKAVVAQAV K S E A R L 2 1 0 1 0 0 2 0 0 0 1 0 0 0 0 1 0 1 0 1 0 0 10 0 1174.5619 O94906 O94906 342 351 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 6.0036E-05 149.19 By MS/MS 2 0.816 1 1 1 3 22619000 0 0 22619000 11790 305 12405 50895;50896;50897 42301 42301 1 0 0 5006400 SEEAHAEDSVMDHHFR ADGQWKKGFVLHKSKSEEAHAEDSVMDHHF EEAHAEDSVMDHHFRKPANDITSQLEINFG K S E F R K 2 1 0 2 0 0 3 0 3 0 0 0 1 1 0 2 0 0 0 1 0 0 16 0 1895.7857 Q8NC51 Q8NC51 330 345 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 3;4 6.0165E-09 164.7 By matching By MS/MS 4.5 0.866 1 6 3 2 1 11 144410000 1824400 0 142580000 11791 1630 12406;12407 50898;50899;50900;50901;50902;50903;50904;50905;50906;50907;50908;50909 42302;42303;42304;42305;42306 42306 652 5 1423400 0 22589000 SEEKISDSEGFK QQHHQGPPPGGPGGRSEEKISDSEGFKANL GGRSEEKISDSEGFKANLSLLRRPGEKTYT R S E F K A 0 0 0 1 0 0 3 1 0 1 0 2 0 1 0 3 0 0 0 0 0 0 12 1 1354.6252 P23246 P23246 268 279 SFPQ Splicing factor, proline- and glutamine-rich yes yes 3 0.029209 59.225 By MS/MS By matching 2.5 0.5 1 1 1 1 16726000 0 15443000 1283400 11792 638 12408 50910;50911 42307 42307 1 0 6954000 248920 SEELNLPEGK WLVHRDGFSLASQLKSEELNLPEGKVRVKL ASQLKSEELNLPEGKVRVKLDHDGAILDVD K S E G K V 0 0 1 0 0 0 3 1 0 0 2 1 0 0 1 1 0 0 0 0 0 0 10 0 1114.5506 Q92614 Q92614 368 377 MYO18A Unconventional myosin-XVIIIa yes yes 2 0.0058761 96.034 By MS/MS 1 0 1 1 4523100 0 4523100 0 11793 1710 12409 50912 42308 42308 1 0 2210800 0 SEEPAGQILSHLSSELK PTSSQDEELMEVVEKSEEPAGQILSHLSSE EPAGQILSHLSSELKEMSTSNFESSPEVEE K S E L K E 1 0 0 0 0 1 3 1 1 1 3 1 0 0 1 4 0 0 0 0 0 0 17 0 1823.9265 Q9UQ35 Q9UQ35 1245 1261 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 6.1734E-05 100.45 By MS/MS By MS/MS 1 0 3 1 2 20046000 0 7219000 12827000 11794 2219 12410 50913;50914;50915 42309;42310;42311 42310 3 0 3528600 2763700 SEETLDEGPPK VKNVKLNEDKPKETKSEETLDEGPPKYTKS KETKSEETLDEGPPKYTKSVLKKGDKTNFP K S E P K Y 0 0 0 1 0 0 3 1 0 0 1 1 0 0 2 1 1 0 0 0 0 0 11 0 1200.551 Q00688 Q00688 100 110 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 2 6.1033E-06 152.34 By matching By MS/MS 6.33 0.471 2 1 1 2 50902000 0 2390000 48512000 11795 1126 12411 50916;50917;50918 42312;42313 42312 2 0 827330 7622400 SEEVPAFGVASPPPLTDTPDTTANAEGDLPTTMGGPLPPHLALK ARDFVNYLVRINEIKSEEVPAFGVASPPPL PTTMGGPLPPHLALKAENNSEVGASGYGVP K S E L K A 5 0 1 3 0 0 3 4 1 0 5 1 1 1 9 2 6 0 0 2 0 0 44 0 4408.1784 Q08211 Q08211 77 120 DHX9 ATP-dependent RNA helicase A yes yes 4 3.6141E-16 60.361 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 37816000 0 11443000 26374000 11796 1182 12412 50919;50920;50921 42314;42315;42316;42317 42316 4 0 5152800 5917000 SEGFDTYR SMDSSHVSLVQLTLRSEGFDTYRCDRNLAM LVQLTLRSEGFDTYRCDRNLAMGVNLTSMS R S E Y R C 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 1 1 0 1 0 0 0 8 0 973.41412 P12004 P12004 54 61 PCNA Proliferating cell nuclear antigen yes yes 2 0.013648 89.296 By MS/MS 10 0 1 1 2066300 0 0 2066300 11797 531 12413 50922 42318 42318 1 0 0 4519200 SEGFSMDR KQQAKPVKVERTRKRSEGFSMDRKVEKKKE VERTRKRSEGFSMDRKVEKKKEPSVEEKLQ R S E D R K 0 1 0 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 0 0 0 0 8 0 927.37563 Q7Z4V5 Q7Z4V5 454 461 HDGFRP2 Hepatoma-derived growth factor-related protein 2 yes yes 2 0.0056944 98.997 By matching By MS/MS 2.5 0.5 1 1 1 1 6820500 0 1586900 5233600 11798 1533 12414 50923;50924 42319 42319 1 0 714610 1015100 SEGGEDYTGATVIEPLK LRQAMHEGLLMPVVKSEGGEDYTGATVIEP GGEDYTGATVIEPLKGYYDVPIATLDFSSL K S E L K G 1 0 0 1 0 0 3 3 0 1 1 1 0 0 1 1 2 0 1 1 0 0 17 0 1764.8418 P28340 P28340 575 591 POLD1 DNA polymerase delta catalytic subunit yes yes 2 0.0037971 78.157 By MS/MS 2 0 1 1 6270400 0 0 6270400 11799 691 12415 50925 42320 42320 1 0 0 1417000 SEGQGIWALLGR CESLEELQNLNGKLRSEGQGIWALLGRITG KLRSEGQGIWALLGRITGQKLNIPAILRAP R S E G R I 1 1 0 0 0 1 1 3 0 1 2 0 0 0 0 1 0 1 0 0 0 0 12 0 1285.6779 O94880 O94880 677 688 PHF14 PHD finger protein 14 yes yes 2 8.6792E-16 128 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 2322900 0 2322900 0 11800 301 12416 50926;50927 42321;42322 42322 2 0 1046000 0 SEHPGLSIGDTAK SAFFLFCSEHRPKIKSEHPGLSIGDTAKKL IKSEHPGLSIGDTAKKLGEMWSEQSAKDKQ K S E A K K 1 0 0 1 0 0 1 2 1 1 1 1 0 0 1 2 1 0 0 0 0 0 13 0 1310.6466 P26583 P26583 115 127 HMGB2 High mobility group protein B2 yes yes 2;3 5.0529E-25 203.8 By matching By MS/MS By MS/MS 6.88 0.927 3 4 1 1 3 4 1257900000 2851200 118350000 1136600000 11801 670 12417 50928;50929;50930;50931;50932;50933;50934;50935 42323;42324;42325;42326;42327;42328;42329;42330;42331;42332 42324 10 3796500 63821000 190170000 SEHPGLSIGDTAKK SAFFLFCSEHRPKIKSEHPGLSIGDTAKKL KSEHPGLSIGDTAKKLGEMWSEQSAKDKQP K S E K K L 1 0 0 1 0 0 1 2 1 1 1 2 0 0 1 2 1 0 0 0 0 0 14 1 1438.7416 P26583 P26583 115 128 HMGB2 High mobility group protein B2 yes yes 3 0.0033629 74.769 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 18507000 0 7897000 10610000 11802 670 12418 50936;50937;50938 42333;42334;42335 42334 3 0 4058100 1882700 SEIDLFNIR AGTDDHTLIRVMVSRSEIDLFNIRKEFRKN RVMVSRSEIDLFNIRKEFRKNFATSLYSMI R S E I R K 0 1 1 1 0 0 1 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 9 0 1105.5768 P08758 P08758 277 285 ANXA5 Annexin A5 yes yes 2 0.00063532 128.57 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 12338000 1155800 0 11183000 11803 479 12419 50939;50940;50941 42336;42337 42337 2 1539000 0 1714800 SEIEYYAMLAK AKLVILANNCPALRKSEIEYYAMLAKTGVH ALRKSEIEYYAMLAKTGVHHYSGNNIELGT K S E A K T 2 0 0 0 0 0 2 0 0 1 1 1 1 0 0 1 0 0 2 0 0 0 11 0 1316.6322 P62888 P62888 58 68 RPL30 60S ribosomal protein L30 yes yes 2 0.045351 74.92 By matching By MS/MS 8.33 0.471 2 1 1 2 84260000 0 4206400 80053000 11804 1046 12420 50942;50943;50944 42338 42338 1 0 1913800 19448000 SEIIPMFSNLASDEQDSVR KLGEFAKVLELDNVKSEIIPMFSNLASDEQ PMFSNLASDEQDSVRLLAVEACVNIAQLLP K S E V R L 1 1 1 2 0 1 2 0 0 2 1 0 1 1 1 4 0 0 0 1 0 0 19 0 2136.9997 P30153 P30153 203 221 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 2 1.6046E-09 152.99 By MS/MS 4 0 1 1 6191700 0 0 6191700 11805 712 12421 50945 42339 42339 1 0 0 1011300 SEIQAEQDR RAFDSAVAKALEHHRSEIQAEQDRKIEEVR ALEHHRSEIQAEQDRKIEEVRDAMENEMRT R S E D R K 1 1 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 9 0 1074.4942 Q16891 Q16891 458 466 IMMT MICOS complex subunit MIC60 yes yes 2 0.0027835 102.51 By MS/MS 3.5 0.5 1 1 2 6791200 0 0 6791200 11806 1403 12422 50946;50947 42340 42340 1 0 0 1291800 SEISELR NREVATNSELVQSGKSEISELRRTMQNLEI SELVQSGKSEISELRRTMQNLEIELQSQLS K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 7 0 832.42905 CON__P02533;P02533;Q04695;CON__Q04695 CON__P02533 329 335 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 2.4857E-23 187.14 By MS/MS By MS/MS By MS/MS 5.75 2.59 1 1 1 2 3 2 2 1 1 2 9 1 6 348400000 189380000 9901800 149120000 + 11807 35;73 12423 50948;50949;50950;50951;50952;50953;50954;50955;50956;50957;50958;50959;50960;50961;50962;50963 42341;42342;42343;42344;42345;42346;42347;42348;42349;42350;42351;42352 42349 12 173770000 2552400 30185000 SEISELRR NREVATNSELVQSGKSEISELRRTMQNLEI ELVQSGKSEISELRRTMQNLEIELQSQLSM K S E R R T 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 8 1 988.53016 CON__P02533;P02533;Q04695;CON__Q04695 CON__P02533 329 336 KRT14;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 17 no no 2 1.2444E-19 186.09 By MS/MS By MS/MS By MS/MS 6.13 2.68 2 1 1 2 3 3 3 2 4 2 11 3 9 609670000 270120000 42087000 297460000 + 11808 35;73 12424 50964;50965;50966;50967;50968;50969;50970;50971;50972;50973;50974;50975;50976;50977;50978;50979;50980;50981;50982;50983;50984;50985;50986 42353;42354;42355;42356;42357;42358;42359;42360;42361;42362;42363;42364;42365;42366;42367;42368;42369;42370;42371;42372;42373;42374;42375 42356 23 270910000 11811000 60303000 SEISENTDASGK KMENCLGESRHEVEKSEISENTDASGKIEK VEKSEISENTDASGKIEKYNVPLNRLKMMF K S E G K I 1 0 1 1 0 0 2 1 0 1 0 1 0 0 0 3 1 0 0 0 0 0 12 0 1236.547 Q9UHB6 Q9UHB6 175 186 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 1.978E-06 162.8 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 17767000 0 4736700 13030000 11809 2150 12425 50987;50988;50989 42376;42377;42378 42378 3 0 2091400 2527200 SEITELR TTEIDNNIEQISSYKSEITELRRNVQALEI IEQISSYKSEITELRRNVQALEIELQSQLA K S E L R R 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 7 0 846.4447 P13645;CON__P13645;CON__P02535-1 P13645 363 369 KRT10 Keratin, type I cytoskeletal 10 no no 1;2 1.1212E-11 174.64 By MS/MS By MS/MS 4.71 2.78 4 3 2 3 3 2 2 2 2 1 15 9 4377200000 3080600000 0 1296500000 + 11810 56;36 12426 50990;50991;50992;50993;50994;50995;50996;50997;50998;50999;51000;51001;51002;51003;51004;51005;51006;51007;51008;51009;51010;51011;51012;51013 42379;42380;42381;42382;42383;42384;42385;42386;42387;42388;42389;42390;42391;42392;42393;42394;42395;42396;42397;42398;42399;42400;42401;42402;42403 42380 23 2852400000 0 429640000 SEITELRR TTEIDNNIEQISSYKSEITELRRNVQALEI EQISSYKSEITELRRNVQALEIELQSQLAL K S E R R N 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 1 1 0 0 0 0 0 8 1 1002.5458 P13645;CON__P13645;CON__P02535-1 P13645 363 370 KRT10 Keratin, type I cytoskeletal 10 no no 2 3.971E-62 234.63 By MS/MS By MS/MS By MS/MS 5.17 2.71 4 3 4 6 3 3 4 4 3 2 18 8 10 6660400000 4126500000 246640000 2287300000 + 11811 56;36 12427 51014;51015;51016;51017;51018;51019;51020;51021;51022;51023;51024;51025;51026;51027;51028;51029;51030;51031;51032;51033;51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049 42404;42405;42406;42407;42408;42409;42410;42411;42412;42413;42414;42415;42416;42417;42418;42419;42420;42421;42422;42423;42424;42425;42426;42427;42428;42429;42430;42431;42432;42433;42434;42435;42436;42437;42438;42439;42440;42441;42442;42443 42421 40 4105700000 110480000 665110000 SELAALPPSVQEEHGQLLALLAELLR ELRRALGRMVERSLRSELAALPPSVQEEHG EEHGQLLALLAELLRGPCGSFDVRKTADD_ R S E L R G 4 1 0 0 0 2 4 1 1 0 8 0 0 0 2 2 0 0 0 1 0 0 26 0 2796.5385 Q7L2E3 Q7L2E3 1155 1180 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3 5.0575E-20 112.13 By MS/MS 2 0 1 1 10493000 0 0 10493000 11812 1522 12428 51050 42444 42444 1 0 0 2371200 SELDQLRQEAEQLK ______________________________ MSELDQLRQEAEQLKNQIRDARKACADATL M S E L K N 1 1 0 1 0 3 3 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 14 1 1685.8584 P62873 P62873 2 15 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes yes 2 0.0002201 139.78 By matching By MS/MS 5.5 0.5 1 1 1 1 12378000 1808100 0 10570000 11813 1043 12429 51051;51052 42445 42445 1 1448500 0 1581300 SELDQLRQEAEQLKNQIR ______________________________ DQLRQEAEQLKNQIRDARKACADATLSQIT M S E I R D 1 2 1 1 0 4 3 0 0 1 3 1 0 0 0 1 0 0 0 0 0 0 18 2 2197.1451 P62873 P62873 2 19 GNB1 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 yes yes 3 0.010548 47.916 By MS/MS 6 0 1 1 1575400 0 1575400 0 11814 1043 12430 51053 42446 42446 1 0 545330 0 SELHLLDFQGK EMKRVAEAKKIERLKSELHLLDFQGKQQNK ERLKSELHLLDFQGKQQNKHVFFFDTKKEV K S E G K Q 0 0 0 1 0 1 1 1 1 0 3 1 0 1 0 1 0 0 0 0 0 0 11 0 1285.6667 Q9Y3A2 Q9Y3A2 121 131 UTP11L Probable U3 small nucleolar RNA-associated protein 11 yes yes 3 0.022475 61.363 By MS/MS 6 0 1 1 10031000 0 0 10031000 11815 2261 12431 51054 42447 42447 1 0 0 1500800 SELIPYLVR IVDFLMENGSITSIRSELIPYLVRKQFSSA SITSIRSELIPYLVRKQFSSASSQQGQEEK R S E V R K 0 1 0 0 0 0 1 0 0 1 2 0 0 0 1 1 0 0 1 1 0 0 9 0 1088.623 Q9NR50 Q9NR50 226 234 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes yes 2 0.0080282 91.626 By MS/MS By MS/MS 4 0 2 1 1 7924400 0 2555700 5368700 11816 2040 12432 51055;51056 42448;42449 42449 2 0 848150 876880 SELKDFFQSYGNVVELR SHQLFIGNLPHEVDKSELKDFFQSYGNVVE LKDFFQSYGNVVELRINSGGKLPNFGFVVF K S E L R I 0 1 1 1 0 1 2 1 0 0 2 1 0 2 0 2 0 0 1 2 0 0 17 1 2030.0109 Q13283 Q13283 354 370 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 3 9.872E-06 104.2 By MS/MS 3.5 0.5 1 1 2 13155000 0 0 13155000 11817 1236 12433 51057;51058 42450 42450 1 0 0 2311200 SELLNELMDSAK WKMLGLFRKHNKIPRSELLNELMDSAKVSN IPRSELLNELMDSAKVSNSPSQAIEVVELA R S E A K V 1 0 1 1 0 0 2 0 0 0 3 1 1 0 0 2 0 0 0 0 0 0 12 0 1348.6544 Q96EY7 Q96EY7 608 619 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.018166 85.958 By MS/MS 3 0 1 1 7890500 0 0 7890500 11818 1780 12434 51059 42451 42451 1 0 0 1530400 SELLPTVR PKKNILLTIGSYKNKSELLPTVRLLESLGY IGSYKNKSELLPTVRLLESLGYSLYASLGT K S E V R L 0 1 0 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 8 0 913.52328 P27708 P27708 1326 1333 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.070103 67.981 By MS/MS 1 0 1 1 8211500 0 8211500 0 11819 681 12435 51060 42452 42452 1 0 4013700 0 SELLVEQGR LEKLNKESRLLNQEKSELLVEQGRLQLQAD LLNQEKSELLVEQGRLQLQADRHQEHIRAR K S E G R L 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 1 0 0 0 1 0 0 9 0 1029.5455 Q92878 Q92878 344 352 RAD50 DNA repair protein RAD50 yes yes 2 0.011783 95.909 By MS/MS 1 0 1 1 0 0 0 0 11820 1726 12436 51061 42453 42453 1 0 0 0 SELPDYYLTIK RGRRLSAIFLRLPSRSELPDYYLTIKKPMD LPSRSELPDYYLTIKKPMDMEKIRSHMMAN R S E I K K 0 0 0 1 0 0 1 0 0 1 2 1 0 0 1 1 1 0 2 0 0 0 11 0 1340.6864 Q86U86 Q86U86 691 701 PBRM1 Protein polybromo-1 yes yes 2 0.0065358 97.965 By MS/MS 1 0 1 1 16037000 0 0 16037000 11821 1545 12437 51062 42454 42454 1 0 0 3455300 SELSQDAEPAGSQETK ILLREFEERRSLRKRSELSQDAEPAGSQET ELSQDAEPAGSQETKDSGSQEVLSELRVLS R S E T K D 2 0 0 1 0 2 3 1 0 0 1 1 0 0 1 3 1 0 0 0 0 0 16 0 1675.7537 Q9BVJ6 Q9BVJ6 434 449 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 2 0.016789 66.393 By MS/MS 2 0 1 1 1360700 0 1360700 0 11822 1915 12438 51063 42455 42455 1 0 612760 0 SELTQQLNTLFQDK QLGNNAKKAVEHIQKSELTQQLNTLFQDKL KSELTQQLNTLFQDKLGEVSTYTDDLQKKL K S E D K L 0 0 1 1 0 3 1 0 0 0 3 1 0 1 0 1 2 0 0 0 0 0 14 0 1663.8417 CON__Q32PJ2 CON__Q32PJ2 52 65 yes yes 2 1.5359E-11 180.97 By MS/MS By MS/MS 7.29 1.39 1 1 2 1 2 4 3 43100000 23550000 0 19550000 + 11823 81 12439 51064;51065;51066;51067;51068;51069;51070 42456;42457;42458 42456 3 20821000 0 4809300 SELVANNVTLPAGEQR EFLEDPSVLTKDKLKSELVANNVTLPAGEQ ELVANNVTLPAGEQRKDVYVQLYLQHLTAR K S E Q R K 2 1 2 0 0 1 2 1 0 0 2 0 0 0 1 1 1 0 0 2 0 0 16 0 1696.8744 P42166;P42167 P42166 18 33 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2;3 9.6641E-129 276.95 By MS/MS By MS/MS By MS/MS 3.91 1.62 1 1 2 4 1 1 1 2 1 8 326210000 21855000 4276400 300080000 11824 798;799 12440 51071;51072;51073;51074;51075;51076;51077;51078;51079;51080;51081 42459;42460;42461;42462;42463;42464;42465 42461 7 17051000 1823000 51580000 SELVNWYLK LRKVEEEEDESALKRSELVNWYLKEIESEI ESALKRSELVNWYLKEIESEIDSEEELINK R S E L K E 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 0 1 1 1 0 0 9 0 1150.6023 Q14566 Q14566 746 754 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0091882 89.55 By MS/MS By matching 2.5 0.5 1 1 1 1 5053200 0 2843700 2209500 11825 1305 12441 51082;51083 42466 42466 1 0 1280600 428530 SEMEVQDAELK PMRITSGPFEPDLYKSEMEVQDAELKALLQ DLYKSEMEVQDAELKALLQSSASRKTQKKK K S E L K A 1 0 0 1 0 1 3 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 11 0 1277.5809 Q9UQ80 Q9UQ80 345 355 PA2G4 Proliferation-associated protein 2G4 yes yes 2 5.6101E-05 144.77 By MS/MS By MS/MS 5.25 0.433 3 1 2 2 215790000 0 58335000 157460000 11826 2220 12442;12443 51084;51085;51086;51087 42467;42468;42469 42467 717 3 0 15037000 21983000 SEMTPEELQK ______________________________ LNKPKSEMTPEELQKREEEEFNTGPLSVLT K S E Q K R 0 0 0 0 0 1 3 0 0 0 1 1 1 0 1 1 1 0 0 0 0 0 10 0 1190.5489 P62316 P62316 9 18 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 0.00026954 123.16 By matching By MS/MS By MS/MS 8.17 0.687 1 3 2 1 2 3 80847000 3720500 15089000 62038000 11827 1023 12444 51088;51089;51090;51091;51092;51093 42470;42471;42472;42473;42474 42474 5 3194200 7935400 14690000 SEMVPSCPFIYIIR GEMLVCETSFNKKEKSEMVPSCPFIYIIRK KSEMVPSCPFIYIIRKDVDVYSQILRKLFN K S E I R K 0 1 0 0 1 0 1 0 0 3 0 0 1 1 2 2 0 0 1 1 0 0 14 0 1710.8473 Q9BW27 Q9BW27 45 58 NUP85 Nuclear pore complex protein Nup85 yes yes 2 0.0011532 74.944 By MS/MS 3 0 1 1 0 0 0 0 11828 1920 12445 51094 42475 42475 1 0 0 0 SENGLEFTSSGSANTETTK KGYGFGLIKLDLKTKSENGLEFTSSGSANT LEFTSSGSANTETTKVTGSLETKYRWTEYG K S E T K V 1 0 2 0 0 0 3 2 0 0 1 1 0 1 0 4 4 0 0 0 0 0 19 0 1958.8705 P21796 P21796 35 53 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 2 7.9352E-09 136.33 By MS/MS 6 0 1 1 8807300 0 0 8807300 11829 625 12446 51095 42476 42476 1 0 0 1317700 SEPALAPADFVAPLAPLPIPSNLFVPTPDAEEPQLPDGTGR RARYVDVLNPSGTQRSEPALAPADFVAPLA TPDAEEPQLPDGTGREGPAAARGLANPEPA R S E G R E 6 1 1 3 0 1 3 2 0 1 5 0 0 2 10 2 2 0 0 2 0 0 41 0 4206.1525 O15027 O15027 2205 2245 SEC16A Protein transport protein Sec16A yes yes 3;4 0.00041924 27.436 By MS/MS 1.33 0.471 2 1 3 5264700 0 0 5264700 11830 161 12447 51096;51097;51098 42477;42478 42477 2 0 0 1157400 SEPIPESNDGPVK FLQDYFDGNLKRYLKSEPIPESNDGPVKVV LKSEPIPESNDGPVKVVVAENFDEIVNNEN K S E V K V 0 0 1 1 0 0 2 1 0 1 0 1 0 0 3 2 0 0 0 1 0 0 13 0 1367.6569 P30101 P30101 367 379 PDIA3 Protein disulfide-isomerase A3 yes yes 2 0.00096171 115.18 By matching By MS/MS 3.5 0.5 1 1 1 1 16036000 5246200 0 10789000 11831 711 12448 51099;51100 42479 42479 1 6053000 0 1762300 SEPKPGLPEDLQK TRKRRKKKITDVLAKSEPKPGLPEDLQKLM AKSEPKPGLPEDLQKLMKDYYSSRRLVIEL K S E Q K L 0 0 0 1 0 1 2 1 0 0 2 2 0 0 3 1 0 0 0 0 0 0 13 1 1436.7511 Q9BQ75 Q9BQ75 85 97 CMSS1 Protein CMSS1 yes yes 3 0.058734 45.115 By matching By MS/MS 6 0 2 1 1 50450000 0 8468200 41982000 11832 1881 12449 51101;51102 42480 42480 1 0 2931400 6280900 SEPVKEESSELEQPFAQDTSSVGPDR PENEKILDILGETCKSEPVKEESSELEQPF EQPFAQDTSSVGPDRKLAEEEDLFDSAHPE K S E D R K 1 1 0 2 0 2 5 1 0 0 1 1 0 1 3 5 1 0 0 2 0 0 26 1 2847.3046 Q14151;Q15424 Q15424 227 252 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 2;3 0 391.07 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 116770000 0 21133000 95641000 11833 1364;1285 12450 51103;51104;51105;51106;51107;51108 42481;42482;42483;42484 42484 4 0 9624000 21438000 SEPVKEESSELEQPFAQDTSSVGPDRK PENEKILDILGETCKSEPVKEESSELEQPF QPFAQDTSSVGPDRKLAEEEDLFDSAHPEE K S E R K L 1 1 0 2 0 2 5 1 0 0 1 2 0 1 3 5 1 0 0 2 0 0 27 2 2975.3996 Q14151;Q15424 Q15424 227 253 SAFB2;SAFB Scaffold attachment factor B2;Scaffold attachment factor B1 no no 3;4 4.5997E-54 186.65 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 65929000 0 15047000 50883000 11834 1364;1285 12451 51109;51110;51111;51112 42485;42486;42487 42487 3 0 6825600 11498000 SEQHGSSSGLSSSYGQHGSGSHQSSGHGR SGYRKHGSRSGQSSRSEQHGSSSGLSSSYG GQHGSGSHQSSGHGRQGSGSGHSPSRVRHG R S E G R Q 0 1 0 0 0 3 1 7 4 0 1 0 0 0 0 11 0 0 1 0 0 0 29 0 2868.2156 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 739 767 HRNR Hornerin yes no 4;5 0.013616 26.817 By MS/MS 5.7 2.9 1 1 1 1 1 2 1 1 1 10 13231000 0 0 13231000 + 11835 96 12452 51113;51114;51115;51116;51117;51118;51119;51120;51121;51122 42488;42489;42490;42491 42490 4 0 0 9517900 SESEVEEAAAIIAQRPDNPR FGDHRDEEEETHMKKSESEVEEAAAIIAQR EEAAAIIAQRPDNPREFFKQQERVASASAG K S E P R E 4 2 1 1 0 1 4 0 0 2 0 0 0 0 2 2 0 0 0 1 0 0 20 1 2181.0662 Q16643 Q16643 272 291 DBN1 Drebrin yes yes 2;3 5.694E-46 216.88 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 49990000 0 8750500 41239000 11836 1395 12453 51123;51124;51125;51126;51127 42492;42493;42494 42494 3 0 3940500 9082300 SESHTDLTFSR IAKRDIEQIIRNYARSESHTDLTFSRELTN NYARSESHTDLTFSRELTNDERKQIHQIAQ R S E S R E 0 1 0 1 0 0 1 0 1 0 1 0 0 1 0 3 2 0 0 0 0 0 11 0 1278.584 O15226 O15226 616 626 NKRF NF-kappa-B-repressing factor yes yes 3 0.0010843 99.174 By MS/MS By matching 2.5 0.5 1 1 1 1 9339300 0 3223500 6115800 11837 174 12454 51128;51129 42495 42495 1 0 1451600 1186200 SESPKEPEQLR ______________________________ ______________________________ K S E L R K 0 1 0 0 0 1 3 0 0 0 1 1 0 0 2 2 0 0 0 0 0 0 11 1 1298.6466 P09651 P09651 4 14 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 2;3 3.2471E-09 172.59 By MS/MS By MS/MS 6.38 2.44 1 1 1 4 4 4 1 2 3 8 13 318400000 0 129390000 189000000 11838 490 12455 51130;51131;51132;51133;51134;51135;51136;51137;51138;51139;51140;51141;51142;51143;51144;51145;51146;51147;51148;51149;51150 42496;42497;42498;42499;42500;42501;42502;42503;42504;42505;42506;42507;42508;42509;42510 42505 15 0 49370000 40717000 SESPKEPEQLRK ______________________________ MSKSESPKEPEQLRKLFIGGLSFETTDESL K S E R K L 0 1 0 0 0 1 3 0 0 0 1 2 0 0 2 2 0 0 0 0 0 0 12 2 1426.7416 P09651 P09651 4 15 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 3 8.9832E-05 130.1 By MS/MS By MS/MS 5.14 1.64 1 1 2 1 2 5 2 115470000 0 108060000 7413800 11839 490 12456 51151;51152;51153;51154;51155;51156;51157 42511;42512;42513;42514;42515 42513 5 0 37962000 1085700 SESSTSAFSTPTR SSPERKKRILKPQLKSESSTSAFSTPTRSI LKSESSTSAFSTPTRSIPPRHNAAQINGKT K S E T R S 1 1 0 0 0 0 1 0 0 0 0 0 0 1 1 5 3 0 0 0 0 0 13 0 1356.6157 Q8WWQ0 Q8WWQ0 1471 1483 PHIP PH-interacting protein yes yes 2 0.00046023 121.9 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 12301000 0 5912100 6388800 11840 1690 12457 51158;51159;51160 42516;42517;42518 42517 3 0 2838800 1376600 SETAPAAPAAAPPAEK ______________________________ ETAPAAPAAAPPAEKAPVKKKAAKKAGGTP M S E E K A 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 P16403 P16403 2 17 HIST1H1C Histone H1.2 yes yes 2;3 2.1586E-05 121.04 By MS/MS By MS/MS By MS/MS 5.5 2.42 4 3 4 5 6 11 8 3 3 3 1 21 28 12503000000 42401000 3192800000 9267700000 11841 578 12458;12459 51161;51162;51163;51164;51165;51166;51167;51168;51169;51170;51171;51172;51173;51174;51175;51176;51177;51178;51179;51180;51181;51182;51183;51184;51185;51186;51187;51188;51189;51190;51191;51192;51193;51194;51195;51196;51197;51198;51199;51200;51201;51202;51203;51204;51205;51206;51207;51208;51209;51210 42519;42520;42521;42522;42523;42524;42525;42526;42527;42528;42529;42530;42531;42532;42533;42534;42535;42536;42537;42538;42539;42540;42541;42542;42543;42544;42545;42546;42547;42548;42549;42550;42551;42552;42553;42554;42555;42556;42557;42558;42559;42560;42561;42562;42563;42564;42565;42566;42567;42568;42569;42570;42571 42531 53 56457000 1206400000 1461600000 SETAPAAPAAAPPAEKAPVK ______________________________ AAPAAAPPAEKAPVKKKAAKKAGGTPRKAS M S E V K K 8 0 0 0 0 0 2 0 0 0 0 2 0 0 5 1 1 0 0 1 0 0 20 1 1872.9945 P16403 P16403 2 21 HIST1H1C Histone H1.2 yes yes 2;3 1.0613E-22 183.96 By MS/MS By MS/MS 5.56 1.57 1 1 1 3 3 7 2 588480000 0 541150000 47322000 11842 578 12460 51211;51212;51213;51214;51215;51216;51217;51218;51219 42572;42573;42574;42575;42576;42577;42578;42579 42574 8 0 191600000 7203000 SETAPAAPAAAPPAEKAPVKK ______________________________ APAAAPPAEKAPVKKKAAKKAGGTPRKASG M S E K K K 8 0 0 0 0 0 2 0 0 0 0 3 0 0 5 1 1 0 0 1 0 0 21 2 2001.0895 P16403 P16403 2 22 HIST1H1C Histone H1.2 yes yes 3 3.901E-06 85.855 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 258550000 0 241730000 16822000 11843 578 12461 51220;51221;51222 42580;42581;42582;42583 42580 4 0 85621000 2516700 SETAPAAPAAPAPAEK ______________________________ ETAPAAPAAPAPAEKTPVKKKARKSAGAAK M S E E K T 7 0 0 0 0 0 2 0 0 0 0 1 0 0 4 1 1 0 0 0 0 0 16 0 1477.7413 P10412 P10412 2 17 HIST1H1E Histone H1.4 yes yes 2 9.6394E-08 143.55 By MS/MS By MS/MS 4.71 1.91 1 1 2 2 1 3 4 111070000 0 28389000 82679000 11844 509 12462 51223;51224;51225;51226;51227;51228;51229 42584;42585;42586;42587;42588;42589;42590 42586 7 0 9548900 12607000 SETAPAAPAAPAPAEKTPVK ______________________________ AAPAAPAPAEKTPVKKKARKSAGAAKRKAS M S E V K K 7 0 0 0 0 0 2 0 0 0 0 2 0 0 5 1 2 0 0 1 0 0 20 1 1903.0051 P10412 P10412 2 21 HIST1H1E Histone H1.4 yes yes 2 2.2258E-17 164.93 By MS/MS By MS/MS 6 0 2 1 1 41062000 0 16348000 24714000 11845 509 12463 51230;51231 42591;42592 42591 2 0 5659200 3697400 SETAPAAPAAPAPAEKTPVKK ______________________________ APAAPAPAEKTPVKKKARKSAGAAKRKASG M S E K K K 7 0 0 0 0 0 2 0 0 0 0 3 0 0 5 1 2 0 0 1 0 0 21 2 2031.1001 P10412 P10412 2 22 HIST1H1E Histone H1.4 yes yes 3 1.954E-05 77.959 By MS/MS By matching 6 0 2 1 1 24756000 0 15345000 9410800 11846 509 12464 51232;51233 42593 42593 1 0 5311900 1408000 SETAPLAPTIPAPAEK ______________________________ ETAPLAPTIPAPAEKTPVKKKAKKAGATAG M S E E K T 4 0 0 0 0 0 2 0 0 1 1 1 0 0 4 1 2 0 0 0 0 0 16 0 1591.8457 P16402 P16402 2 17 HIST1H1D Histone H1.3 yes yes 2 2.4546E-05 112.5 By MS/MS By MS/MS By MS/MS 4.5 1.86 1 1 1 1 2 3 1 1 3 6 443390000 3395300 87085000 352910000 11847 577 12465 51234;51235;51236;51237;51238;51239;51240;51241;51242;51243 42594;42595;42596;42597;42598;42599;42600;42601;42602 42598 9 4520900 29739000 53936000 SETILSPPPEKR IHPELLAKKRGTKGKSETILSPPPEKRGRK KGKSETILSPPPEKRGRKATSGKKGGKKSK K S E K R G 0 1 0 0 0 0 2 0 0 1 1 1 0 0 3 2 1 0 0 0 0 0 12 1 1352.73 Q9P0M6 Q9P0M6 124 135 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 0.00012199 142.43 By MS/MS By MS/MS 5 0 3 1 2 14513000 0 6043100 8470000 11848 2117 12466 51244;51245;51246 42603;42604;42605 42604 3 0 1557700 1181400 SEVDMLK KGTRDKVLIRIMVSRSEVDMLKIRSEFKRK LIRIMVSRSEVDMLKIRSEFKRKYGKSLYY R S E L K I 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 7 0 820.40005 P07355;A6NMY6 P07355 296 302 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 0.024814 97.071 By matching By matching By MS/MS 6.8 1.72 1 2 1 1 1 1 3 31386000 2272500 3735900 25377000 11849 459 12467 51247;51248;51249;51250;51251 42606 42606 1 1820600 1293200 8036600 SEVELAAALSDKR VAQGRVKDLESLFHRSEVELAAALSDKRGL HRSEVELAAALSDKRGLESDVAELRAQLAK R S E K R G 3 1 0 1 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 1 1387.7307 Q03252 Q03252 159 171 LMNB2 Lamin-B2 yes yes 2;3 2.2763E-24 199.33 By MS/MS By MS/MS 3 0 3 2 1 57133000 0 17543000 39590000 11850 1156 12468 51252;51253;51254 42607;42608;42609;42610 42610 4 0 7478600 7678600 SEVNDKNHEMEEIR MAQLQDLKNQHLAKKSEVNDKNHEMEEIRK KSEVNDKNHEMEEIRKKLGGANKEMTHLQK K S E I R K 0 1 2 1 0 0 4 0 1 1 0 1 1 0 0 1 0 0 0 1 0 0 14 1 1728.7737 Q14683 Q14683 882 895 SMC1A Structural maintenance of chromosomes protein 1A yes yes 3 0.0012953 87.498 By MS/MS 1.5 0.5 1 1 2 6520100 0 0 6520100 11851 1312 12469 51255;51256 42611 42611 1 0 0 1419200 SEVQAMLGQSTEELR GSDMEDLRNRLAQYRSEVQAMLGQSTEELR SEVQAMLGQSTEELRARMASHLRKLPKRLL R S E L R A 1 1 0 0 0 2 3 1 0 0 2 0 1 0 0 2 1 0 0 1 0 0 15 0 1676.8039 CON__Q03247 CON__Q03247 137 151 yes yes 2;3 8.192E-173 300.71 By MS/MS By MS/MS By MS/MS 7.48 1.92 1 3 7 4 4 3 7 9 4 16 824560000 92477000 30543000 701540000 + 11852 72 12470;12471 51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274;51275;51276;51277;51278;51279;51280;51281;51282;51283;51284;51285 42612;42613;42614;42615;42616;42617;42618;42619;42620;42621;42622;42623;42624;42625;42626;42627;42628;42629;42630;42631;42632;42633;42634;42635;42636;42637;42638;42639;42640;42641 42624 57 30 98682000 71727000 155700000 SEVQQPVHPKPLSPDSR RSTPAEDDSRDSQVKSEVQQPVHPKPLSPD VQQPVHPKPLSPDSRASSLSESSPPKAMKK K S E S R A 0 1 0 1 0 2 1 0 1 0 1 1 0 0 4 3 0 0 0 2 0 0 17 1 1899.9803 Q9UHB6 Q9UHB6 350 366 LIMA1 LIM domain and actin-binding protein 1 yes yes 3;4 0.0011193 74.12 By MS/MS By MS/MS 2.5 0.866 1 3 3 1 3 5 66044000 0 17579000 48466000 11853 2150 12472 51286;51287;51288;51289;51290;51291;51292;51293 42642;42643;42644;42645;42646;42647;42648 42646 7 0 7745400 9968000 SEVTDLRR NREVAGHTEQLQMSRSEVTDLRRTLQGLEI EQLQMSRSEVTDLRRTLQGLEIELQSQLSM R S E R R T 0 2 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 1 974.51451 CON__P08727;P08727;CON__Q99456;Q99456 CON__P08727 294 301 KRT19;KRT12 Keratin, type I cytoskeletal 19;Keratin, type I cytoskeletal 12 yes no 2 0.0031738 110.61 By matching By MS/MS 4.5 0.5 1 1 1 1 3031600 0 244910 2786700 + 11854 51 12473 51294;51295 42649;42650 42650 2 0 81277 388700 SEVTELR NKEVASNSELVQSSRSEVTELRRVLQGLEI SELVQSSRSEVTELRRVLQGLEIELQSQLS R S E L R R 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 7 0 832.42905 CON__P08779;P08779 CON__P08779 331 337 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.0027579 138.07 By MS/MS 6.2 1.72 1 1 1 1 1 5 22081000 22081000 0 0 + 11855 53 12474 51296;51297;51298;51299;51300 42651;42652 42651 2 19671000 0 0 SEVTELRR NKEVASNSELVQSSRSEVTELRRVLQGLEI ELVQSSRSEVTELRRVLQGLEIELQSQLSM R S E R R V 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 8 1 988.53016 CON__P08779;P08779 CON__P08779 331 338 KRT16 Keratin, type I cytoskeletal 16 yes no 2 0.000148 148.04 By MS/MS By matching By MS/MS 5.25 3.06 1 2 2 1 1 1 1 2 1 5 1 6 42166000 23213000 849380 18103000 + 11856 53 12475 51301;51302;51303;51304;51305;51306;51307;51308;51309;51310;51311;51312 42653;42654;42655;42656;42657;42658;42659;42660;42661;42662;42663;42664 42659 12 19585000 382490 7381000 SEWNTVER EYKVFVRKLRKAYGKSEWNTVERLKDNKPN LRKAYGKSEWNTVERLKDNKPNYKLDHIIK K S E E R L 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 8 0 1019.4672 O00541 O00541 99 106 PES1 Pescadillo homolog yes yes 2 0.0026928 107.59 By matching By MS/MS 3 0.816 1 1 1 1 2 30769000 0 879370 29890000 11857 127 12476 51313;51314;51315 42665 42665 1 0 395990 5743600 SFAESGWR ______________________________ ______________________________ M S F W R S 1 1 0 0 0 0 1 1 0 0 0 0 0 1 0 2 0 1 0 0 0 0 8 0 938.42463 Q8N6S5 Q8N6S5 2 9 ARL6IP6 ADP-ribosylation factor-like protein 6-interacting protein 6 yes yes 2 0.00065863 116.88 By MS/MS By matching 7 0 2 1 1 3073000 0 1288700 1784300 11858 1612 12477 51316;51317 42666 42666 1 0 739970 316610 SFAIASLVETGHLAAFSLTSHLNDTFR RKGSEHQAIVQHLEKSFAIASLVETGHLAA LAAFSLTSHLNDTFRFDSEKLQVGQGVSLT K S F F R F 4 1 1 1 0 0 1 1 2 1 4 0 0 3 0 4 3 0 0 1 0 0 27 0 2904.477 Q14690 Q14690 938 964 PDCD11 Protein RRP5 homolog yes yes 3 3.0694E-15 97.441 By MS/MS 2 0 1 1 2088500 0 0 2088500 11859 1314 12478 51318 42667 42667 1 0 0 471960 SFDALNFVTMLK NDVVFVIDSGKVKEKSFDALNFVTMLKMVW KEKSFDALNFVTMLKMVWISKASAIQRKGR K S F L K M 1 0 1 1 0 0 0 0 0 0 2 1 1 2 0 1 1 0 0 1 0 0 12 0 1384.7061 Q9H6S0 Q9H6S0 713 724 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 yes yes 2 0.018166 85.958 By MS/MS 2 0 1 1 1948400 0 1948400 0 11860 1989 12479 51319 42668 42668 1 0 877410 0 SFDFEIETK EISFVNFARGTTTTRSFDFEIETKQGTQYT GTTTTRSFDFEIETKQGTQYTFSSIEREEY R S F T K Q 0 0 0 1 0 0 2 0 0 1 0 1 0 2 0 1 1 0 0 0 0 0 9 0 1114.5183 Q08945 Q08945 388 396 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.0047859 97.431 By matching By matching By MS/MS 3.25 0.433 3 1 1 1 2 30881000 2107500 2782900 25991000 11861 1186 12480 51320;51321;51322;51323 42669;42670 42669 2 2431600 1186400 4745200 SFDLIHSPHGELK EIQRVTNIKTSAKIKSFDLIHSPHGELKAV IKSFDLIHSPHGELKAVFLLQNNLVELYSL K S F L K A 0 0 0 1 0 0 1 1 2 1 2 1 0 1 1 2 0 0 0 0 0 0 13 0 1478.7518 Q9UNX4 Q9UNX4 367 379 WDR3 WD repeat-containing protein 3 yes yes 3 0.010273 67.275 By MS/MS 1.5 0.5 1 1 2 19461000 0 0 19461000 11862 2212 12481 51324;51325 42671 42671 1 0 0 4256700 SFDLLILK AGLLQYVANQLKAGKSFDLLILKEVVQKMA NQLKAGKSFDLLILKEVVQKMAGIEITEEM K S F L K E 0 0 0 1 0 0 0 0 0 1 3 1 0 1 0 1 0 0 0 0 0 0 8 0 947.56917 Q8NI27 Q8NI27 673 680 THOC2 THO complex subunit 2 yes yes 2 0.0053842 99.375 By MS/MS 1 0 1 1 6572100 0 0 6572100 11863 1647 12482 51326 42672 42672 1 0 0 1416100 SFDPFTEVIVDGIVANALR SGYLLKPEFMRRPDKSFDPFTEVIVDGIVA FTEVIVDGIVANALRVKVISGQFLSDRKVG K S F L R V 2 1 1 2 0 0 1 1 0 2 1 0 0 2 1 1 1 0 0 3 0 0 19 0 2062.0735 Q01970 Q01970 711 729 PLCB3 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 yes yes 2;3 7.918E-09 136.3 By MS/MS 2 0 2 2 7648700 0 0 7648700 11864 1142 12483 51327;51328 42673;42674 42673 2 0 0 1728500 SFDSASQVPNPAAAAIPR STSSEPTPTVKTLIKSFDSASQVPNPAAAA SASQVPNPAAAAIPRTPLSPSPMKTPPAAA K S F P R T 5 1 1 1 0 1 0 0 0 1 0 0 0 1 3 3 0 0 0 1 0 0 18 0 1797.901 Q69YQ0 Q69YQ0 847 864 SPECC1L Cytospin-A yes yes 2 1.6439E-08 147.26 By MS/MS 2 0 1 1 3920900 0 3920900 0 11865 1469 12484 51329 42675 42675 1 0 1765600 0 SFEAPATINSASLHPEK RSIAFHSAVSLDPIKSFEAPATINSASLHP EAPATINSASLHPEKEFLVAGGEDFKLYKY K S F E K E 3 0 1 0 0 0 2 0 1 1 1 1 0 1 2 3 1 0 0 0 0 0 17 0 1797.8897 Q9Y3F4 Q9Y3F4 219 235 STRAP Serine-threonine kinase receptor-associated protein yes yes 2;3 4.3071E-05 104.18 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 41299000 0 20216000 21083000 11866 2275 12485 51330;51331;51332;51333 42676;42677 42677 2 0 5738400 3021500 SFEWLSQMR DVTRSLIKSKIDNAKSFEWLSQMRFYFDPK KIDNAKSFEWLSQMRFYFDPKQTDVLQQLS K S F M R F 0 1 0 0 0 1 1 0 0 0 1 0 1 1 0 2 0 1 0 0 0 0 9 0 1182.5492 Q14204 Q14204 1835 1843 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00065852 133.55 By MS/MS 1 0 1 1 2223900 0 2223900 0 11867 1292 12486 51334 42678 42678 1 0 1087000 0 SFFQIMFK GPLSPYTIEFLRHLKSFFQIMFKIETKPCG EFLRHLKSFFQIMFKIETKPCGEELKGGDK K S F F K I 0 0 0 0 0 1 0 0 0 1 0 1 1 3 0 1 0 0 0 0 0 0 8 0 1046.5259 Q9Y2P8 Q9Y2P8 333 340 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.02066 83.801 By matching By MS/MS 6 0 2 1 1 3625300 0 591760 3033500 11868 2243 12487 51335;51336 42679 42679 1 0 204850 453850 SFFSEIISSISDVK RHSKLFEEPEDPSNRSFFSEIISSISDVKF RSFFSEIISSISDVKFSHSGRYMMTRDYLS R S F V K F 0 0 0 1 0 0 1 0 0 3 0 1 0 2 0 5 0 0 0 1 0 0 14 0 1557.7926 P63151;Q66LE6;Q00005 P63151 279 292 PPP2R2A;PPP2R2D;PPP2R2B Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform yes no 2 0.026753 71.085 By MS/MS 4 0 1 1 4341400 0 0 4341400 11869 1060 12488 51337 42680 42680 1 0 0 709090 SFFSVESGTK VFRQMDFPGESSNNRSFFSVESGTKMSGLH SSNNRSFFSVESGTKMSGLHISGGQSVLEP R S F T K M 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 3 1 0 0 1 0 0 10 0 1087.5186 Q14966 Q14966 283 292 ZNF638 Zinc finger protein 638 yes yes 2 0.048404 73.233 By MS/MS 1 0 1 1 3806900 0 0 3806900 11870 1324 12489 51338 42681 42681 1 0 0 820260 SFGGEVSWDK LNREVPREALAFIIRSFGGEVSWDKSLCIG AFIIRSFGGEVSWDKSLCIGATYDVTDSRI R S F D K S 0 0 0 1 0 0 1 2 0 0 0 1 0 1 0 2 0 1 0 1 0 0 10 0 1110.4982 O00541 O00541 349 358 PES1 Pescadillo homolog yes yes 2 0.050681 72.643 By matching By MS/MS 2.5 1.12 1 1 1 1 2 2 27605000 7311800 0 20293000 11871 127 12490 51339;51340;51341;51342 42682 42682 1 8348400 0 3865400 SFGGGTGSGFTSLLMER LAEQCGGLQGFLIFRSFGGGTGSGFTSLLM GGGTGSGFTSLLMERLTGEYSRKTKLEFSV R S F E R L 0 1 0 0 0 0 1 5 0 0 2 0 1 2 0 3 2 0 0 0 0 0 17 0 1702.7985 A6NHL2 A6NHL2 147 163 TUBAL3 Tubulin alpha chain-like 3 yes yes 2 0.0022771 86.944 By MS/MS 4 0 1 1 9040800 0 0 9040800 11872 13 12491 51343 42683 42683 3 1 0 0 1476600 SFGSTCQLSEK TFDSQTKENMTLQPKSFGSTCQLSEKFIKA LQPKSFGSTCQLSEKFIKAAIGCGIVESIL K S F E K F 0 0 0 0 1 1 1 1 0 0 1 1 0 1 0 3 1 0 0 0 0 0 11 0 1242.5551 P11388 P11388 387 397 TOP2A DNA topoisomerase 2-alpha yes yes 2 0.015683 86.624 By MS/MS 1 0 1 1 18106000 0 0 18106000 11873 524 12492 51344 42684 42684 1 0 0 3901300 SFHHVTHDLVR KDEERAEEIVAAQEKSFHHVTHDLVREVTS AQEKSFHHVTHDLVREVTSPNSTVRKQAMH K S F V R E 0 1 0 1 0 0 0 0 3 0 1 0 0 1 0 1 1 0 0 2 0 0 11 0 1346.6844 Q9Y4A5 Q9Y4A5 1237 1247 TRRAP Transformation/transcription domain-associated protein yes yes 3 0.052848 45.257 By MS/MS 1 0 1 1 4356900 0 0 4356900 11874 2285 12493 51345 42685 42685 1 0 0 938760 SFHPEQDAGK IFQVDLFTWPGQRERSFHPEQDAGKVFKGH GQRERSFHPEQDAGKVFKGHRNQVTCLSVS R S F G K V 1 0 0 1 0 1 1 1 1 0 0 1 0 1 1 1 0 0 0 0 0 0 10 0 1114.5043 Q9BV38 Q9BV38 254 263 WDR18 WD repeat-containing protein 18 yes yes 2 0.0058761 96.034 By MS/MS 5 0 1 1 1546500 0 1546500 0 11875 1910 12494 51346 42686 42686 1 0 398650 0 SFHSFYQLLQGGSEQMLR LLEKSRVIVQQPGERSFHSFYQLLQGGSEQ SFYQLLQGGSEQMLRSLHLQKSLSSYNYIH R S F L R S 0 1 0 0 0 3 1 2 1 0 3 0 1 2 0 3 0 0 1 0 0 0 18 0 2127.0208 O94832 O94832 200 217 MYO1D Unconventional myosin-Id yes yes 3 2.3438E-10 159.69 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 19825000 0 6020200 13805000 11876 299 12495 51347;51348;51349 42687;42688 42688 2 0 2711000 3095600 SFIPSLVEK DVMIHPVTNRPADKRSFIPSLVEKEKVSRM RPADKRSFIPSLVEKEKVSRMVHAIKMGWI R S F E K E 0 0 0 0 0 0 1 0 0 1 1 1 0 1 1 2 0 0 0 1 0 0 9 0 1018.5699 Q14137 Q14137 245 253 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.024175 79.474 By MS/MS 3 0 1 1 21726000 0 0 21726000 11877 1283 12496 51350 42689 42689 1 0 0 4213700 SFITTDVNPYYDSFVR IQDLKRMGLKVDWRRSFITTDVNPYYDSFV FITTDVNPYYDSFVRWQFLTLRERNKIKFG R S F V R W 0 1 1 2 0 0 0 0 0 1 0 0 0 2 1 2 2 0 2 2 0 0 16 0 1922.905 Q9P2J5 Q9P2J5 204 219 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.0041924 83.314 By MS/MS 2 0 1 1 3197800 0 3197800 0 11878 2124 12497 51351 42690 42690 1 0 1440000 0 SFLEFAEDVIQVPR FHIYGEDQDAVKKARSFLEFAEDVIQVPRN RSFLEFAEDVIQVPRNLVGKVIGKNGKLIQ R S F P R N 1 1 0 1 0 1 2 0 0 1 1 0 0 2 1 1 0 0 0 2 0 0 14 0 1648.8461 Q06787 Q06787 277 290 FMR1 Fragile X mental retardation protein 1 yes yes 3 0.067586 35.803 By MS/MS 3 0 1 1 804770 0 0 804770 11879 1172 12498 51352 42691 42691 1 0 0 156090 SFLLDLLNATGK NITQKVVWVEESDKRSFLLDLLNATGKDSL DKRSFLLDLLNATGKDSLTLVFVETKKGAD R S F G K D 1 0 1 1 0 0 0 1 0 0 4 1 0 1 0 1 1 0 0 0 0 0 12 0 1290.7184 O00571 O00571 429 440 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 1.7336E-34 209.39 By MS/MS By MS/MS By MS/MS 3 1.47 2 3 3 2 1 1 1 8 3 649880000 11182000 303560000 335130000 11880 131 12499 51353;51354;51355;51356;51357;51358;51359;51360;51361;51362;51363;51364 42692;42693;42694;42695;42696;42697;42698;42699;42700;42701 42695 10 12901000 116310000 65452000 SFLSGLYEFPLNK GGPVRAATACFGFPKSFLSGLYEFPLNKVD PKSFLSGLYEFPLNKVDSLLHGTFSAKMLS K S F N K V 0 0 1 0 0 0 1 1 0 0 3 1 0 2 1 2 0 0 1 0 0 0 13 0 1513.7817 Q9UJA5 Q9UJA5 249 261 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 0.00036622 126.67 By matching By MS/MS 4 0.816 1 1 1 1 2 9527200 816730 8710500 0 11881 2168 12500 51365;51366;51367 42702 42702 1 942320 2803700 0 SFLSQGQVLK PLEEATLSELKTVLKSFLSQGQVLKLEAKT KTVLKSFLSQGQVLKLEAKTDPSILGGMIV K S F L K L 0 0 0 0 0 2 0 1 0 0 2 1 0 1 0 2 0 0 0 1 0 0 10 0 1105.6132 P48047 P48047 163 172 ATP5O ATP synthase subunit O, mitochondrial yes yes 2 0.0071046 93.374 By MS/MS 7 0 1 1 9895000 0 9895000 0 11882 841 12501 51368 42703 42703 1 0 5681800 0 SFLVASVLPGPDGNINSPTR EVLGVIGDCPELVQRSFLVASVLPGPDGNI SVLPGPDGNINSPTRNADMQEELIASLEEQ R S F T R N 1 1 2 1 0 0 0 2 0 1 2 0 0 1 3 3 1 0 0 2 0 0 20 0 2040.064 Q7Z3K3 Q7Z3K3 1322 1341 POGZ Pogo transposable element with ZNF domain yes yes 2 2.9997E-14 155.39 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 8615200 0 4861100 3754100 11883 1530 12502 51369;51370;51371 42704;42705 42704 2 0 2245400 848350 SFMALSQDIQK QEVTNNLEFAKELQRSFMALSQDIQKTIKK ELQRSFMALSQDIQKTIKKTARREQLMREE R S F Q K T 1 0 0 1 0 2 0 0 0 1 1 1 1 1 0 2 0 0 0 0 0 0 11 0 1266.6278 Q14444 Q14444 115 125 CAPRIN1 Caprin-1 yes yes 2 2.6051E-19 191.17 By MS/MS By MS/MS 3.44 1.71 1 2 2 2 1 1 6 3 174030000 0 101130000 72904000 11884 1301 12503 51372;51373;51374;51375;51376;51377;51378;51379;51380 42706;42707;42708;42709;42710;42711;42712;42713;42714 42708 9 0 41627000 14970000 SFNLPMLMLGGGGYTIR NLTIKGHAKCVEFVKSFNLPMLMLGGGGYT NLPMLMLGGGGYTIRNVARCWTYETAVALD K S F I R N 0 1 1 0 0 0 0 4 0 1 3 0 2 1 1 1 1 0 1 0 0 0 17 0 1825.9219 Q13547 Q13547 290 306 HDAC1 Histone deacetylase 1 yes yes 2 8.3712E-06 147.68 By MS/MS By MS/MS 3.75 0.433 1 3 2 2 34808000 0 13950000 20858000 11885 1257 12504;12505 51381;51382;51383;51384 42715;42716;42717;42718 42717 4 0 4629400 3594100 SFPDFPTPGVVFR ______________________________ IRSFPDFPTPGVVFRDISPVLKDPASFRAA R S F F R D 0 1 0 1 0 0 0 1 0 0 0 0 0 3 3 1 1 0 0 2 0 0 13 0 1464.7402 P07741 P07741 15 27 APRT Adenine phosphoribosyltransferase yes yes 2 0.0032801 105.2 By MS/MS By MS/MS 7 0 2 1 1 5573000 0 1350400 4222600 11886 464 12506 51385;51386 42719;42720 42720 2 0 775420 749270 SFQQSSLSR ______________________________ ______________________________ K S F S R D 0 1 0 0 0 2 0 0 0 0 1 0 0 1 0 4 0 0 0 0 0 0 9 0 1038.5094 P43243 P43243 4 12 MATR3 Matrin-3 yes yes 2 0.00050384 124.98 By MS/MS By MS/MS 2.33 0.745 1 2 3 3 3 52574000 37453000 15121000 0 11887 812 12507 51387;51388;51389;51390;51391;51392 42721;42722;42723 42722 3 43763000 6758400 0 SFSEFGK VRNLATTVTEEILEKSFSEFGKLERVKKLK VTEEILEKSFSEFGKLERVKKLKDYAFVHF K S F G K L 0 0 0 0 0 0 1 1 0 0 0 1 0 2 0 2 0 0 0 0 0 0 7 0 800.37047 O43390 O43390 360 366 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 1 0.0010076 158.12 By MS/MS 3.5 0.5 1 1 2 9067900 0 9067900 0 11888 195 12508 51393;51394 42724 42724 1 0 3460500 0 SFSKEELMSSDLEETAGSTSIPK MEDPSISFSKPKKKKSFSKEELMSSDLEET SSDLEETAGSTSIPKRKKSTPKEETVNDPE K S F P K R 1 0 0 1 0 0 4 1 0 1 2 2 1 1 1 6 2 0 0 0 0 0 23 1 2472.1578 O00567 O00567 511 533 NOP56 Nucleolar protein 56 yes yes 3 4.8646E-05 74.876 By MS/MS By MS/MS 3 0 2 1 1 16035000 0 3467800 12567000 11889 130 12509 51395;51396 42725;42726 42725 2 0 1478300 2437400 SFSTASAITPSVSR MSRQSSVSFRSGGSRSFSTASAITPSVSRT RSFSTASAITPSVSRTSFTSVSRSGGGGGG R S F S R T 2 1 0 0 0 0 0 0 0 1 0 0 0 1 1 5 2 0 0 1 0 0 14 0 1409.7151 CON__P13647;P13647 CON__P13647 16 29 KRT5 Keratin, type II cytoskeletal 5 no no 2 2.3984E-11 178.54 By MS/MS By MS/MS By MS/MS 5.71 2.8 2 1 2 3 2 2 3 2 1 3 10 5 6 379120000 288160000 16110000 74852000 + 11890 58 12510 51397;51398;51399;51400;51401;51402;51403;51404;51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415;51416;51417 42727;42728;42729;42730;42731;42732;42733;42734;42735;42736;42737;42738;42739;42740;42741;42742;42743;42744;42745;42746;42747 42730 21 308490000 16288000 40167000 SFTPDHVVYAR ERREKLKTSRDKLRKSFTPDHVVYARSKTA KLRKSFTPDHVVYARSKTAVYKVPPFTFHV K S F A R S 1 1 0 1 0 0 0 0 1 0 0 0 0 1 1 1 1 0 1 2 0 0 11 0 1290.6357 Q6NZI2 Q6NZI2 300 310 PTRF Polymerase I and transcript release factor yes yes 3 0.0044654 81.771 By MS/MS By matching 4.67 0.471 1 2 2 1 13147000 0 8071600 5075800 11891 1483 12511 51418;51419;51420 42748;42749 42748 2 0 2444600 707980 SFTTRSTFSTNYRSLGSVQAPSYGAR ______________________________ YRSLGSVQAPSYGARPVSSAASVYAGAGGS M S F A R P 2 3 1 0 0 1 0 2 0 0 1 0 0 2 1 6 4 0 2 1 0 0 26 2 2840.3842 P05783 P05783 2 27 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 3.2238E-20 114.9 By MS/MS 5 0 1 1 13199000 0 13199000 0 11892 436 12512 51421 42750 42750 1 0 3402200 0 SFVAYEELIK ______________________________ ______________________________ M S F I K E 1 0 0 0 0 0 2 0 0 1 1 1 0 1 0 1 0 0 1 1 0 0 10 0 1197.6281 Q96FX7 Q96FX7 2 11 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 2 0.014041 78.264 By MS/MS By matching 6.5 0.5 1 1 1 1 3399600 0 3157600 242040 11893 1785 12513 51422;51423 42751 42751 1 0 1093000 42948 SFVEFILEPLYK TRKFTKKAPTSSSQRSFVEFILEPLYKILA SQRSFVEFILEPLYKILAQVVGDVDTSLPR R S F Y K I 0 0 0 0 0 0 2 0 0 1 2 1 0 2 1 1 0 0 1 1 0 0 12 0 1483.7963 Q15029 Q15029 368 379 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 2.9317E-05 150.81 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 96573000 0 1359000 95214000 11894 1335 12514 51424;51425;51426;51427 42752;42753;42754 42753 3 0 612000 21196000 SFVWHALDYADELPKPEQLAIR ISPDMKLTPNAGSDRSFVWHALDYADELPK DYADELPKPEQLAIRFKTPEEAALFKCKFE R S F I R F 3 1 0 2 0 1 2 0 1 1 3 1 0 1 2 1 0 1 1 1 0 0 22 1 2597.3278 P49792 P49792 1263 1284 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 3;4 9.957E-13 110.44 By MS/MS 1.33 0.471 2 1 3 18228000 0 0 18228000 11895 871 12515 51428;51429;51430 42755;42756 42755 1 0 0 3974700 SFYPEEVSSMVLTK AGRPKVQVEYKGETKSFYPEEVSSMVLTKM KSFYPEEVSSMVLTKMKEIAEAYLGKTVTN K S F T K M 0 0 0 0 0 0 2 0 0 0 1 1 1 1 1 3 1 0 1 2 0 0 14 0 1615.7804 P11142 P11142 113 126 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 5.397E-05 119.76 By MS/MS By MS/MS 3.56 2.06 2 4 1 2 5 4 285290000 0 90444000 194850000 11896 517 12516;12517 51431;51432;51433;51434;51435;51436;51437;51438;51439 42757;42758;42759;42760;42761;42762;42763;42764;42765 42757 221 9 0 38856000 37587000 SFYQFQHYR LLRVEEINPEYMLEKSFYQFQHYRAIPGVV EYMLEKSFYQFQHYRAIPGVVEKVKNSEEQ K S F Y R A 0 1 0 0 0 2 0 0 1 0 0 0 0 2 0 1 0 0 2 0 0 0 9 0 1274.5833 P42285 P42285 588 596 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2;3 0.00039562 120.65 By matching By MS/MS By MS/MS 2.2 0.4 4 1 1 1 3 27325000 2009300 3797000 21519000 11897 800 12518 51440;51441;51442;51443;51444 42766;42767;42768 42768 3 2421000 1709800 4807300 SFYTAIAQAFLSNEK VTFKDEPGEGSGVARSFYTAIAQAFLSNEK SFYTAIAQAFLSNEKLPNLECIQNANKGTH R S F E K L 3 0 1 0 0 1 1 0 0 1 1 1 0 2 0 2 1 0 1 0 0 0 15 0 1688.841 O95071 O95071 2294 2308 UBR5 E3 ubiquitin-protein ligase UBR5 yes yes 2 0.00048933 110.66 By MS/MS 1 0 1 1 3055200 0 0 3055200 11898 308 12519 51445 42769 42769 1 0 0 658300 SGAAQGLAEVMAGLGVEK WLMETLTYEQSSVDRSGAAQGLAEVMAGLG AQGLAEVMAGLGVEKLEKLMPEIVATASKV R S G E K L 4 0 0 0 0 1 2 4 0 0 2 1 1 0 0 1 0 0 0 2 0 0 18 0 1686.8611 Q92616 Q92616 1714 1731 GCN1L1 Translational activator GCN1 yes yes 2 0.0061182 67.93 By matching By MS/MS 1.33 0.471 2 1 1 2 4207300 588970 3618300 0 11899 1712 12520 51446;51447;51448 42770 42770 1 588970 1703100 0 SGALDVLQMK ______________________________ ______________________________ M S G M K E 1 0 0 1 0 1 0 1 0 0 2 1 1 0 0 1 0 0 0 1 0 0 10 0 1060.5587 P08865 P08865 2 11 RPSA 40S ribosomal protein SA yes yes 2 1.8518E-07 159.46 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 63636000 0 18721000 44915000 11900 480 12521 51449;51450;51451;51452 42771;42772;42773 42773 3 0 6889900 6893500 SGALDVLQMKEEDVLK ______________________________ GALDVLQMKEEDVLKFLAAGTHLGGTNLDF M S G L K F 1 0 0 2 0 1 2 1 0 0 3 2 1 0 0 1 0 0 0 2 0 0 16 1 1773.9183 P08865 P08865 2 17 RPSA 40S ribosomal protein SA yes yes 2 5.0428E-47 220.31 By MS/MS By MS/MS 6.92 1.73 3 4 2 1 1 2 5 8 260220000 0 93337000 166880000 11901 480 12522;12523 51453;51454;51455;51456;51457;51458;51459;51460;51461;51462;51463;51464;51465 42774;42775;42776;42777;42778;42779;42780;42781;42782;42783;42784;42785;42786;42787;42788 42775 193 15 0 41499000 26609000 SGAQASSTPLSPTR ______________________________ RSGAQASSTPLSPTRITRLQEKEDLQELND R S G T R I 2 1 0 0 0 1 0 1 0 0 1 0 0 0 2 4 2 0 0 0 0 0 14 0 1358.679 P02545 P02545 12 25 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 5.0986E-26 206.24 By matching By MS/MS By MS/MS 3.4 0.49 3 2 1 2 2 131320000 5003600 29081000 97237000 11902 387 12524 51466;51467;51468;51469;51470 42789;42790;42791;42792;42793 42792 5 5773000 11525000 18732000 SGASGASAAPAASAAAALAPSATR RSRSSAAAKLRGQKRSGASGASAAPAASAA PAASAAAALAPSATRTRRSASQAGSKSQAV R S G T R T 12 1 0 0 0 0 0 2 0 0 1 0 0 0 2 5 1 0 0 0 0 0 24 0 1983.9974 Q7Z7K6 Q7Z7K6 18 41 CENPV Centromere protein V yes yes 2 1.7086E-20 139.6 By matching By MS/MS 6 0 2 1 1 16236000 0 2943500 13293000 11903 1538 12525 51471;51472 42794 42794 1 0 1018900 1988700 SGASVVAIR MDAILTEAIKACFQKSGASVVAIRKYIIHK KACFQKSGASVVAIRKYIIHKYPSLELERR K S G I R K 2 1 0 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 858.49232 Q5SSJ5 Q5SSJ5 176 184 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.00058062 134.81 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 32768000 0 7325500 25443000 11904 1445 12526 51473;51474;51475 42795;42796 42795 2 0 3122800 4894800 SGAYLIPLLER SGRDILARAKNGTGKSGAYLIPLLERLDLK GTGKSGAYLIPLLERLDLKKDNIQAMVIVP K S G E R L 1 1 0 0 0 0 1 1 0 1 3 0 0 0 1 1 0 0 1 0 0 0 11 0 1230.6972 P26196 P26196 147 157 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.00026433 134.51 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 31554000 0 9660900 21893000 11905 665 12527 51476;51477;51478 42797;42798 42798 2 0 3206100 3510200 SGDEMIFDPTMSK ______________________________ ______________________________ M S G S K K 0 0 0 2 0 0 1 1 0 1 0 1 2 1 1 2 1 0 0 0 0 0 13 0 1456.6214 P20042 P20042 2 14 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.0034672 94.363 By MS/MS 5 0 1 1 2591900 0 2591900 0 11906 613 12528 51479 42799 42799 1 0 668110 0 SGDETPGSEVPGDK EQGLGKREEDEPEERSGDETPGSEVPGDKA RSGDETPGSEVPGDKAAEEQGDDQDSEKSK R S G D K A 0 0 0 2 0 0 2 3 0 0 0 1 0 0 2 2 1 0 0 1 0 0 14 0 1373.5947 Q1KMD3 Q1KMD3 161 174 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 0.014068 77.387 By MS/MS By matching 2.5 0.5 1 1 1 1 9831000 0 5502200 4328800 11907 1404 12529 51480;51481 42800 42800 1 0 2477700 839570 SGDHLHNDSQIEADFR ______________________________ GDHLHNDSQIEADFRLNDSHKHKDKHKDRE M S G F R L 1 1 1 3 0 1 1 1 2 1 1 0 0 1 0 2 0 0 0 0 0 0 16 0 1839.8136 P11387 P11387 2 17 TOP1 DNA topoisomerase 1 yes yes 2;3 1.9195E-74 240.75 By MS/MS By MS/MS 3.1 1.92 2 3 2 1 1 1 1 9 159380000 0 14892000 144480000 11908 523 12530 51482;51483;51484;51485;51486;51487;51488;51489;51490;51491 42801;42802;42803;42804;42805;42806;42807 42806 6 0 6706100 30698000 SGDRGETGPAGPSGAPGPAGSR PGHPGPPGPVGPAGKSGDRGETGPAGPSGA GPAGPSGAPGPAGSRGPPGPQGPRGDKGET K S G S R G 3 2 0 1 0 0 1 7 0 0 0 0 0 0 4 3 1 0 0 0 0 0 22 1 1936.8987 CON__P04258 CON__P04258 1061 1082 yes yes 3 0.0072463 44.848 By MS/MS By MS/MS By matching 5 2.74 1 1 2 3 1 1 1 1 1 9 2 1 20867000 17850000 2486500 530770 + 11909 46 12531 51492;51493;51494;51495;51496;51497;51498;51499;51500;51501;51502;51503 42808;42809;42810;42811;42812 42809 5 20687000 973920 86693 SGDSEVYQLGDVSQK NPVTIFSLATNEMWRSGDSEVYQLGDVSQK SGDSEVYQLGDVSQKTTWHRISVFRPGLRD R S G Q K T 0 0 0 2 0 2 1 2 0 0 1 1 0 0 0 3 0 0 1 2 0 0 15 0 1610.7424 Q04837 Q04837 67 81 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2 1.6482E-45 220.94 By MS/MS By MS/MS By MS/MS 8.29 0.7 1 3 3 2 2 3 158700000 12159000 3076300 143460000 11910 1161 12532 51504;51505;51506;51507;51508;51509;51510 42813;42814;42815;42816;42817;42818;42819 42818 7 7676000 1782600 27125000 SGEDEQQEQTIAEDLVVTK ______________________________ EQQEQTIAEDLVVTKYKMGGDIANRVLRSL M S G T K Y 1 0 0 2 0 3 4 1 0 1 1 1 0 0 0 1 2 0 0 2 0 0 19 0 2117.9964 Q9UQ80 Q9UQ80 2 20 PA2G4 Proliferation-associated protein 2G4 yes yes 2 4.3466E-31 198.33 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 35527000 0 8347800 27179000 11911 2220 12533 51511;51512;51513 42820;42821;42822 42820 3 0 2151800 3963000 SGEGEVSGLMR YSSAEPHVSGVKRSRSGEGEVSGLMRKVPR KRSRSGEGEVSGLMRKVPRVSLERLDLDLT R S G M R K 0 1 0 0 0 0 2 3 0 0 1 0 1 0 0 2 0 0 0 1 0 0 11 0 1120.5183 Q13263 Q13263 473 483 TRIM28 Transcription intermediary factor 1-beta yes yes 2 2.7841E-59 232.46 By matching By MS/MS By MS/MS 2.71 1.28 1 3 1 1 1 1 3 3 65928000 1556100 31940000 32432000 11912 1235 12534 51514;51515;51516;51517;51518;51519;51520 42823;42824;42825;42826 42823 4 1875000 13413000 6851400 SGEGTLLDLHQQK LEHLLQAKREEQRQRSGEGTLLDLHQQKEA QRSGEGTLLDLHQQKEAARRKAREEKARQA R S G Q K E 0 0 0 1 0 2 1 2 1 0 3 1 0 0 0 1 1 0 0 0 0 0 13 0 1424.726 Q9UPN4 Q9UPN4 308 320 CEP131 Centrosomal protein of 131 kDa yes yes 2 0.015898 82.029 By MS/MS 2 0 1 1 4657300 0 0 4657300 11913 2215 12535 51521 42827 42827 1 0 0 1052500 SGEIVQEYDR VAGMSDKKIVQWDIRSGEIVQEYDRHLGAV QWDIRSGEIVQEYDRHLGAVNTIVFVDENR R S G D R H 0 1 0 1 0 1 2 1 0 1 0 0 0 0 0 1 0 0 1 1 0 0 10 0 1194.5517 O60508 O60508 407 416 CDC40 Pre-mRNA-processing factor 17 yes yes 2 0.027181 78.939 By MS/MS 3 0 1 1 4576100 0 0 4576100 11914 228 12536 51522 42828 42828 1 0 0 887550 SGEKPLLGGSLMEYAILSAIAAMNEPK QITGKGASGTFQLKKSGEKPLLGGSLMEYA EYAILSAIAAMNEPKTCSTTALKKYVLENH K S G P K T 4 0 1 0 0 0 3 3 0 2 4 2 2 0 2 3 0 0 1 0 0 0 27 1 2789.4343 Q5SSJ5 Q5SSJ5 331 357 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 3 9.8339E-15 93.596 By MS/MS 2.6 1.02 1 1 2 1 5 58943000 0 0 58943000 11915 1445 12537;12538 51523;51524;51525;51526;51527 42829;42830;42831;42832;42833;42834 42831 633 6 0 0 12113000 SGELAQEYDKR KNPKERTALFEEISRSGELAQEYDKRKKEM EISRSGELAQEYDKRKKEMVKAEEDTQFNY R S G K R K 1 1 0 1 0 1 2 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 11 1 1294.6153 Q14683 Q14683 161 171 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 1.9323E-26 201.61 By MS/MS By MS/MS 1.67 0.667 4 4 1 4 5 53348000 0 16256000 37092000 11916 1312 12539 51528;51529;51530;51531;51532;51533;51534;51535;51536 42835;42836;42837;42838;42839;42840;42841 42838 7 0 7458100 7960400 SGESPTANVLLSPLSVATALSALSLGAEQR AAAVSNFGYDLYRVRSGESPTANVLLSPLS VATALSALSLGAEQRTESNIHRALYYDLIS R S G Q R T 5 1 1 0 0 1 2 2 0 0 6 0 0 0 2 6 2 0 0 2 0 0 30 0 2938.5611 CON__Q95121 CON__Q95121 68 97 yes yes 3 0.070346 15.162 By MS/MS 4 0 1 1 529570 0 0 529570 + 11917 97 12540 51537 42842 42842 1 0 0 86496 SGFGEISSPVIR ______________________________ MDRSGFGEISSPVIREAEVTRTARKQSAQK R S G I R E 0 1 0 0 0 0 1 2 0 2 0 0 0 1 1 3 0 0 0 1 0 0 12 0 1247.651 P57740 P57740 4 15 NUP107 Nuclear pore complex protein Nup107 yes yes 2 1.9068E-16 135.43 By MS/MS 2 0 1 1 0 0 0 0 11918 956 12541 51538 42843 42843 1 0 0 0 SGFLVWR DGIYKVVKYWPEKGKSGFLVWRYLLRRDDD KYWPEKGKSGFLVWRYLLRRDDDEPGPWTK K S G W R Y 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 1 0 0 7 0 863.46537 Q96T88 Q96T88 571 577 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.025289 96.666 By matching By MS/MS By MS/MS 3.43 1.5 3 1 1 1 1 1 1 5 24048000 1517000 2583900 19947000 11919 1841 12542 51539;51540;51541;51542;51543;51544;51545 42844;42845;42846 42846 3 1827800 1163600 3801900 SGFNFGGTGAPTGGFTFGTAK ______________________________ GTGAPTGGFTFGTAKTATTTPATGFSFSTS M S G A K T 2 0 1 0 0 0 0 7 0 0 0 1 0 4 1 1 4 0 0 0 0 0 21 0 1977.9221 P37198 P37198 2 22 NUP62 Nuclear pore glycoprotein p62 yes yes 2 4.1098E-11 115.8 By MS/MS 3 0 1 1 8573300 0 0 8573300 11920 767 12543 51546 42847 42847 1 0 0 1662800 SGFNLEELEK TPPPYFNESIVVDMKSGFNLEELEKNNAQS VVDMKSGFNLEELEKNNAQSIRAIKGPHLA K S G E K N 0 0 1 0 0 0 3 1 0 0 2 1 0 1 0 1 0 0 0 0 0 0 10 0 1164.5663 Q9BVP2 Q9BVP2 425 434 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.063669 69.276 By MS/MS 3 0 1 1 7835200 0 0 7835200 11921 1917 12544 51547 42848 42848 1 0 0 1519700 SGFSSISVSR RGFSANSARLPGVSRSGFSSISVSRSRGSG PGVSRSGFSSISVSRSRGSGGLGGACGGAG R S G S R S 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 5 0 0 0 1 0 0 10 0 1025.5142 CON__P04259;CON__P48668;P48668 CON__P48668 31 40 KRT6C Keratin, type II cytoskeletal 6C no no 2 3.9617E-09 149.72 By MS/MS By matching By MS/MS 6.4 3.2 1 1 1 1 1 1 1 3 7 1 2 265920000 235290000 951180 29683000 + 11922 68;47 12545 51548;51549;51550;51551;51552;51553;51554;51555;51556;51557 42849;42850;42851;42852;42853;42854;42855 42850 7 262690000 4812200 14414000 SGFSSVSVSR RGFSANSARLPGVSRSGFSSVSVSRSRGSG PGVSRSGFSSVSVSRSRGSGGLGGACGGAG R S G S R S 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 5 0 0 0 2 0 0 10 0 1011.4985 P02538;CON__P02538 P02538 31 40 KRT6A Keratin, type II cytoskeletal 6A yes no 2 4.4559E-09 158.76 By MS/MS By matching By MS/MS 5.5 3.42 3 1 1 1 1 1 1 1 1 3 10 1 3 495500000 455870000 414560 39217000 + 11923 37 12546 51558;51559;51560;51561;51562;51563;51564;51565;51566;51567;51568;51569;51570;51571 42856;42857;42858;42859;42860;42861;42862;42863;42864;42865 42858 10 525150000 2097300 22122000 SGGASHSELIHNLR ______________________________ KSGGASHSELIHNLRKNGIIKTDKVFEVML K S G L R K 1 1 1 0 0 0 1 2 2 1 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1476.7433 P22061 P22061 5 18 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase yes yes 2 7.6039E-05 157.97 By MS/MS 7 0 1 1 8787100 0 0 8787100 11924 626 12547 51572 42866 42866 1 0 0 1559200 SGGEQAQDWDALPPK ______________________________ SGGEQAQDWDALPPKRPRLGAGNKIGGRRL R S G P K R 2 0 0 2 0 2 1 2 0 0 1 1 0 0 2 1 0 1 0 0 0 0 15 0 1597.7372 Q92979 Q92979 14 28 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 0.067953 56.328 By MS/MS 7 0 1 1 6144500 0 0 6144500 11925 1736 12548 51573 42867 42867 1 0 0 1090300 SGGGFGPDPGSGTTVPAR RERLRWPPPPKPRLKSGGGFGPDPGSGTTV GFGPDPGSGTTVPARRLPVPRPSFDASASE K S G A R R 1 1 0 1 0 0 0 6 0 0 0 0 0 1 3 2 2 0 0 1 0 0 18 0 1615.759 Q9H4L4 Q9H4L4 44 61 SENP3 Sentrin-specific protease 3 yes yes 2 0.0011441 88.075 By MS/MS 3 0 1 1 11582000 0 0 11582000 11926 1983 12549 51574 42868 42868 1 0 0 2246300 SGGGFSSGSAGIINYQR ______________________________ GGFSSGSAGIINYQRRTTSSSTRRSGGGGG R S G Q R R 1 1 1 0 0 1 0 5 0 2 0 0 0 1 0 4 0 0 1 0 0 0 17 0 1656.7856 P04264;CON__P04264 P04264 13 29 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 1.4289E-227 317.44 By MS/MS By MS/MS By MS/MS 5.64 3.08 5 3 3 3 3 3 4 3 4 5 14 10 12 2447100000 1623500000 148800000 674800000 + 11927 413 12550 51575;51576;51577;51578;51579;51580;51581;51582;51583;51584;51585;51586;51587;51588;51589;51590;51591;51592;51593;51594;51595;51596;51597;51598;51599;51600;51601;51602;51603;51604;51605;51606;51607;51608;51609;51610 42869;42870;42871;42872;42873;42874;42875;42876;42877;42878;42879;42880;42881;42882;42883;42884;42885;42886;42887;42888;42889;42890;42891;42892;42893;42894;42895;42896;42897;42898;42899;42900;42901;42902;42903;42904;42905;42906;42907;42908 42880 40 1769500000 112620000 249070000 SGGGFSSGSAGIINYQRR ______________________________ GFSSGSAGIINYQRRTTSSSTRRSGGGGGR R S G R R T 1 2 1 0 0 1 0 5 0 2 0 0 0 1 0 4 0 0 1 0 0 0 18 1 1812.8867 P04264;CON__P04264 P04264 13 30 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 3.9316E-51 218.75 By MS/MS 8.11 1.79 1 1 2 2 3 9 92429000 92429000 0 0 + 11928 413 12551 51611;51612;51613;51614;51615;51616;51617;51618;51619 42909;42910;42911;42912;42913;42914 42912 6 112360000 0 0 SGGGGGGGGCGGGGGVSSLR MSVRYSSSKHYSSSRSGGGGGGGGCGGGGG GGGGCGGGGGVSSLRISSSKGSLGGGFSSG R S G L R I 0 1 0 0 1 0 0 13 0 0 1 0 0 0 0 3 0 0 0 1 0 0 20 0 1548.6699 P13645;CON__P13645 P13645 16 35 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.1643E-36 204.43 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 34131000 34131000 0 0 + 11929 56 12552 51620;51621;51622;51623;51624;51625;51626;51627;51628;51629 42915;42916;42917;42918;42919;42920;42921;42922;42923;42924;42925;42926;42927;42928;42929;42930;42931;42932;42933;42934;42935;42936 42917 22 38926000 0 0 SGGGGGGGGSSWGGR FGSYSQHQSSYGPMKSGGGGGGGGSSWGGR SGGGGGGGGSSWGGRSNSGPYRGGYGGGGG K S G G R S 0 1 0 0 0 0 0 10 0 0 0 0 0 0 0 3 0 1 0 0 0 0 15 0 1191.5017 Q13151 Q13151 270 284 HNRNPA0 Heterogeneous nuclear ribonucleoprotein A0 yes yes 2 0.0033486 87.001 By MS/MS 6 0 1 1 610650 610650 0 0 11930 1225 12553 51630 42937 42937 1 813090 0 0 SGGGGGGGLGSGGSIR ______________________________ GGGGGGGLGSGGSIRSSYSRFSSSGGGGGG R S G I R S 0 1 0 0 0 0 0 10 0 1 1 0 0 0 0 3 0 0 0 0 0 0 16 0 1231.5905 P35527;CON__P35527 P35527 14 29 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.1672E-90 253.97 By MS/MS By MS/MS By MS/MS 5.59 2.85 3 3 3 3 4 3 3 3 4 3 12 10 10 2874600000 2507600000 100950000 266040000 + 11931 750 12554 51631;51632;51633;51634;51635;51636;51637;51638;51639;51640;51641;51642;51643;51644;51645;51646;51647;51648;51649;51650;51651;51652;51653;51654;51655;51656;51657;51658;51659;51660;51661;51662 42938;42939;42940;42941;42942;42943;42944;42945;42946;42947;42948;42949;42950;42951;42952;42953;42954;42955;42956;42957;42958;42959;42960;42961;42962;42963;42964;42965;42966;42967;42968;42969;42970;42971;42972;42973;42974;42975;42976;42977;42978;42979;42980;42981;42982;42983;42984;42985;42986;42987;42988;42989;42990;42991;42992;42993;42994;42995;42996;42997;42998;42999;43000;43001 42966 64 2806800000 75386000 118700000 SGGGGGGGLGSGGSIRSSYSR ______________________________ GGLGSGGSIRSSYSRFSSSGGGGGGGRFSS R S G S R F 0 2 0 0 0 0 0 10 0 1 1 0 0 0 0 6 0 0 1 0 0 0 21 1 1811.8511 P35527;CON__P35527 P35527 14 34 KRT9 Keratin, type I cytoskeletal 9 yes no 3 1.662E-11 116.6 By MS/MS 8.5 1.5 1 1 2 9617100 9617100 0 0 + 11932 750 12555 51663;51664 43002;43003 43002 2 18955000 0 0 SGGIPALVR HNLSHHREGLLAIFKSGGIPALVRMLSSPV LLAIFKSGGIPALVRMLSSPVESVLFYAIT K S G V R M 1 1 0 0 0 0 0 2 0 1 1 0 0 0 1 1 0 0 0 1 0 0 9 0 868.51305 P14923 P14923 225 233 JUP Junction plakoglobin yes yes 2 0.01547 85.212 By MS/MS By matching 2.8 1.17 1 1 1 2 4 1 35954000 31075000 0 4879000 11933 567 12556 51665;51666;51667;51668;51669 43004 43004 1 29684000 0 796900 SGGLGGSHALLLLR IPKKLLQKVFNDTCRSGGLGGSHALLLLRS RSGGLGGSHALLLLRSCGSLLPELKLEERT R S G L R S 1 1 0 0 0 0 0 4 1 0 5 0 0 0 0 2 0 0 0 0 0 0 14 0 1349.7779 P42704 P42704 115 128 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 0.00013204 98.531 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 14216000 0 4342500 9873200 11934 808 12557 51670;51671;51672 43005;43006 43005 2 0 2122500 2231100 SGGMERPFVLAR GLYVHMATADGLRQRSGGMERPFVLARAFF RQRSGGMERPFVLARAFFAGSQRFGAVWTG R S G A R A 1 2 0 0 0 0 1 2 0 0 1 0 1 1 1 1 0 0 0 1 0 0 12 1 1318.6816 Q14697 Q14697 591 602 GANAB Neutral alpha-glucosidase AB yes yes 3 0.00019669 119.76 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 10224000 0 0 10224000 11935 1317 12558 51673;51674;51675 43007;43008 43008 2 0 0 2277800 SGGNEVSIEER KPAPPQTEQVESKRKSGGNEVSIEERLGAM SKRKSGGNEVSIEERLGAMDIDTHKKGKED K S G E R L 0 1 1 0 0 0 3 2 0 1 0 0 0 0 0 2 0 0 0 1 0 0 11 0 1175.5418 Q15061 Q15061 431 441 WDR43 WD repeat-containing protein 43 yes yes 2 7.8802E-14 182.16 By MS/MS By MS/MS 3 0 2 1 1 32328000 0 5420900 26907000 11936 1343 12559 51676;51677 43009;43010 43010 2 0 2311000 5218700 SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK YNYESKFNYSGSGGRSGGNSYGSGGASYNP GYGGGSGGGSSYQGKQGGYSQSNYNSPGSG R S G G K Q 1 0 2 0 0 1 0 15 1 0 0 1 0 0 1 8 0 0 4 0 0 0 34 0 3011.2302 Q12906 Q12906 816 849 ILF3 Interleukin enhancer-binding factor 3 yes yes 3 2.2582E-80 189.31 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 34989000 0 21406000 13583000 11937 1211 12560 51678;51679;51680 43011;43012 43011 2 0 9639400 3037500 SGGVGGSNTNWK AEGQALDGVSISDLKSGGVGGSNTNWKTLY DLKSGGVGGSNTNWKTLYEVKSENLGQGDK K S G W K T 0 0 2 0 0 0 0 4 0 0 0 1 0 0 0 2 1 1 0 1 0 0 12 0 1162.5367 P27694 P27694 432 443 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.070955 67.726 By MS/MS 3 0 1 1 4887800 0 0 4887800 11938 679 12561 51681 43013 43013 1 0 0 948000 SGIPIVTSPYQIHFTK TVILHSGSDMVQAERSGIPIVTSPYQIHFT GIPIVTSPYQIHFTKTPKYFKPGMPFDLMV R S G T K T 0 0 0 0 0 1 0 1 1 3 0 1 0 1 2 2 2 0 1 1 0 0 16 0 1786.9618 P01024 P01024 344 359 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 0.00098999 79.805 By MS/MS 9.5 0.5 1 1 2 16463000 16463000 0 0 11939 371 12562 51682;51683 43014;43015 43014 2 12749000 0 0 SGKWEGLVYAPPGK MSKVIGANKNQEEEKSGKWEGLVYAPPGKE KSGKWEGLVYAPPGKEKQRKTEELEEESFP K S G G K E 1 0 0 0 0 0 1 3 0 0 1 2 0 0 2 1 0 1 1 1 0 0 14 1 1487.7773 Q9Y2W1 Q9Y2W1 468 481 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 0.0010409 153.34 By MS/MS By MS/MS 1.6 0.49 2 3 2 3 63437000 0 20315000 43122000 11940 2252 12563 51684;51685;51686;51687;51688 43016;43017;43018;43019 43019 4 0 9269400 9599000 SGLAIVSQHDLDQLQADAINAFGESLQK RLQDSFASETNLDFRSGLAIVSQHDLDQLQ LQADAINAFGESLQKKLLDIEGLYSKVRSR R S G Q K K 4 0 1 3 0 4 1 2 1 2 4 1 0 1 0 3 0 0 0 1 0 0 28 0 2967.4938 Q92621 Q92621 1950 1977 NUP205 Nuclear pore complex protein Nup205 yes yes 3 2.4208E-40 160.52 By MS/MS 1 0 1 1 18417000 0 0 18417000 11941 1714 12564 51689 43020 43020 1 0 0 3968200 SGLGEEINVQCK S G C K 0 0 1 0 1 1 2 2 0 1 1 1 0 0 0 1 0 0 0 1 0 0 12 0 1332.6344 REV__Q9UQD0 yes yes 3 0.045893 47.288 By MS/MS 9 0 1 1 293230000 0 0 293230000 + 11942 2346 12565 51690 43021 43021 1 0 0 93670000 SGLIFYR DIVTTTTHKTLRGARSGLIFYRKGVKAVDP HKTLRGARSGLIFYRKGVKAVDPKTGREIP R S G Y R K 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 7 0 854.46504 P34897 P34897 287 293 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.029951 92.692 By MS/MS By MS/MS 5 0.894 2 1 2 3 2 40997000 0 17701000 23295000 11943 734 12566 51691;51692;51693;51694;51695 43022;43023 43022 2 0 5678100 3773100 SGLNQIPNRR FEESMKWKKLTNAQRSGLNQIPNRRFTLWW TNAQRSGLNQIPNRRFTLWWSPTINRANVY R S G R R F 0 2 2 0 0 1 0 1 0 1 1 0 0 0 1 1 0 0 0 0 0 0 10 1 1153.6316 Q6P2Q9 Q6P2Q9 1524 1533 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00046656 120.15 By MS/MS By MS/MS 1 0 2 1 1 12813000 0 4753800 8059000 11944 1490 12567 51696;51697 43024;43025 43025 2 0 2323600 1736400 SGMSHEEDQLIPNLYR LRWSKQTDVGITHFRSGMSHEEDQLIPNLY GMSHEEDQLIPNLYRYIQPWESEFIDSQRV R S G Y R Y 0 1 1 1 0 1 2 1 1 1 2 0 1 0 1 2 0 0 1 0 0 0 16 0 1887.8785 Q6P2Q9 Q6P2Q9 1355 1370 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 4.7814E-74 238.98 By MS/MS By MS/MS 1 0 3 1 2 34392000 0 8995600 25396000 11945 1490 12568 51698;51699;51700 43026;43027;43028 43028 3 0 4396900 5472000 SGNELPLAVASTADLIR LQRYALNRITVWRSRSGNELPLAVASTADL NELPLAVASTADLIRCKLLDVTGGLGTDEL R S G I R C 3 1 1 1 0 0 1 1 0 1 3 0 0 0 1 2 1 0 0 1 0 0 17 0 1725.9261 Q9Y4W2 Q9Y4W2 80 96 LAS1L Ribosomal biogenesis protein LAS1L yes yes 2 0.00082487 94.728 By matching By MS/MS By MS/MS 3 0 3 1 1 1 18623000 654820 2472300 15496000 11946 2289 12569 51701;51702;51703 43029;43030 43030 2 755520 1054000 3005500 SGNQFVLYR KAVDAALTKYNSENKSGNQFVLYRITEVAR YNSENKSGNQFVLYRITEVARMDNPDTFYS K S G Y R I 0 1 1 0 0 1 0 1 0 0 1 0 0 1 0 1 0 0 1 1 0 0 9 0 1082.5509 CON__P01045-1;CON__Q2KJ62;CON__P01044-1 CON__P01045-1 49 57 yes no 2 0.00039395 121.99 By MS/MS 10 0 1 1 5400200 0 5400200 0 + 11947 33 12570 51704 43031 43031 1 0 27321000 0 SGPFGQIFRPDNFVFGQSGAGNNWAK AVLVDLEPGTMDSVRSGPFGQIFRPDNFVF NFVFGQSGAGNNWAKGHYTEGAELVDSVLD R S G A K G 2 1 3 1 0 2 0 5 0 1 0 1 0 4 2 2 0 1 0 1 0 0 26 1 2797.3361 P07437;P68371;Q13885;Q9BVA1;P04350 P68371 78 103 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain no no 2;3;4 0 411.13 By MS/MS By MS/MS 4.81 2.11 2 2 3 4 6 4 1 3 1 9 17 3542100000 0 1241100000 2301000000 11948 1079;462;1274;414 12571 51705;51706;51707;51708;51709;51710;51711;51712;51713;51714;51715;51716;51717;51718;51719;51720;51721;51722;51723;51724;51725;51726;51727;51728;51729;51730 43032;43033;43034;43035;43036;43037;43038;43039;43040;43041;43042;43043;43044;43045;43046;43047;43048;43049;43050;43051;43052;43053;43054;43055;43056;43057;43058;43059;43060;43061;43062;43063;43064;43065;43066;43067;43068;43069;43070;43071;43072;43073;43074;43075;43076;43077;43078;43079;43080;43081;43082;43083;43084 43057 53 0 337210000 361640000 SGPFGQLFR AALVDLEPGTMDSVRSGPFGQLFRPDNFIF TMDSVRSGPFGQLFRPDNFIFGQTGAGNNW R S G F R P 0 1 0 0 0 1 0 2 0 0 1 0 0 2 1 1 0 0 0 0 0 0 9 0 1007.5189 Q9BUF5 Q9BUF5 78 86 TUBB6 Tubulin beta-6 chain yes yes 2 0.062488 67.903 By MS/MS 4 0 1 1 1367700 0 1367700 0 11949 1905 12572 51731 43085 43085 1 0 453880 0 SGPIFIVVPNGK KKMPSKTSLKEDEDKSGPIFIVVPNGKEQR EDKSGPIFIVVPNGKEQRMKDEKGLKVLKW K S G G K E 0 0 1 0 0 0 0 2 0 2 0 1 0 1 2 1 0 0 0 2 0 0 12 0 1226.7023 Q14008 Q14008 1157 1168 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.06623 68.846 By MS/MS 1 0 1 1 2014300 0 2014300 0 11950 1279 12573 51732 43086 43086 1 0 984560 0 SGPLFNFDVHDDVR HHSFYDFIVTKARGKSGPLFNFDVHDDVRL KSGPLFNFDVHDDVRLLSDATVEKDESHAG K S G V R L 0 1 1 3 0 0 0 1 1 0 1 0 0 2 1 1 0 0 0 2 0 0 14 0 1616.7583 Q14320 Q14320 276 289 FAM50A Protein FAM50A yes yes 3 0.029996 49.988 By MS/MS 5 0 1 1 3234900 0 0 3234900 11951 1299 12574 51733 43087 43087 1 0 0 451200 SGPPAPEEEEEEER EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ KSGPPAPEEEEEEERQSGNTEQKSKSKQHR K S G E R Q 1 1 0 0 0 0 7 1 0 0 0 0 0 0 3 1 0 0 0 0 0 0 14 0 1583.6587 Q9NTI5 Q9NTI5 1319 1332 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.00078292 113.61 By MS/MS 2.5 1.5 1 1 2 15705000 0 0 15705000 11952 2053 12575 51734;51735 43088;43089 43088 2 0 0 3310800 SGPPAPEEEEEEERQSGNTEQK EEPTMKTSKKGSKKKSGPPAPEEEEEEERQ EEEEEERQSGNTEQKSKSKQHRVSRRAQQR K S G Q K S 1 1 1 0 0 2 8 2 0 0 0 1 0 0 3 2 1 0 0 0 0 0 22 1 2456.0575 Q9NTI5 Q9NTI5 1319 1340 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 2.5189E-23 163.85 By MS/MS 1 0 1 1 10164000 0 0 10164000 11953 2053 12576 51736 43090 43090 1 0 0 2190000 SGQGAFGNMCR AVARIPRVRGGGTHRSGQGAFGNMCRGGRM GTHRSGQGAFGNMCRGGRMFAPTKTWRRWH R S G C R G 1 1 1 0 1 1 0 3 0 0 0 0 1 1 0 1 0 0 0 0 0 0 11 0 1183.4863 P36578 P36578 87 97 RPL4 60S ribosomal protein L4 yes yes 2 0.016432 86.205 By MS/MS 4 0.816 1 1 1 3 8243100 0 0 8243100 11954 762 12577 51737;51738;51739 43091 43091 1 0 0 1248400 SGQSALYDALFSSQSPK KQDFLKEIVETFANKSGQSALYDALFSSQS QSALYDALFSSQSPKDTSFLGSDDIGNIDV K S G P K D 2 0 0 1 0 2 0 1 0 0 2 1 0 1 1 5 0 0 1 0 0 0 17 0 1784.8581 A6NKT7;Q7Z3J3;P49792 P49792 380 396 RGPD3;RGPD4;RANBP2 RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;E3 SUMO-protein ligase RanBP2 no no 2;3 5.7131E-06 150.26 By matching By MS/MS 1.67 0.745 3 2 1 2 4 30980000 1790500 0 29189000 11955 871;17 12578 51740;51741;51742;51743;51744;51745 43092;43093;43094 43094 3 2075500 0 6327200 SGQSSYGQHSSGSSQSSGYGQHGSR SGSGQSSGFGQHESRSGQSSYGQHSSGSSQ SGSSQSSGYGQHGSRQTSGFGQHGSGSSQS R S G S R Q 0 1 0 0 0 4 0 6 2 0 0 0 0 0 0 10 0 0 2 0 0 0 25 0 2499.0395 CON__Q5D862;Q5D862 CON__Q5D862 613 637 FLG2 Filaggrin-2 yes no 4 0.033125 25.021 By MS/MS By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 1 8 8907100 0 482500 8424600 + 11956 90 12579 51746;51747;51748;51749;51750;51751;51752;51753;51754 43095;43096;43097 43097 3 0 235840 5454600 SGQVYSFGCNDEGALGR VQAEAGGMHTVCLSKSGQVYSFGCNDEGAL QVYSFGCNDEGALGRDTSVEGSEMVPGKVE K S G G R D 1 1 1 1 1 1 1 4 0 0 1 0 0 1 0 2 0 0 1 1 0 0 17 0 1815.7846 P18754 P18754 85 101 RCC1 Regulator of chromosome condensation yes yes 2 5.2036E-07 161.48 By MS/MS 5 0 1 1 28589000 0 0 28589000 11957 599 12580 51755 43098 43098 1 0 0 3987700 SGSDEVQVGQQR NDFDEYIMAIEQTIKSGSDEVQVGQQRTFI TIKSGSDEVQVGQQRTFISPIKCREALKLE K S G Q R T 0 1 0 1 0 3 1 2 0 0 0 0 0 0 0 2 0 0 0 2 0 0 12 0 1288.6008 P01024 P01024 1571 1582 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.0010245 117.89 By MS/MS 9.5 0.5 1 1 2 1308200 1308200 0 0 11958 371 12581 51756;51757 43099 43099 1 1153100 0 0 SGSGQSSGFGQHGSGSGQSSGFGQHESGSGK HGSSSGQTFGFGQHRSGSGQSSGFGQHGSG GQSSGFGQHESGSGKSSGFGQHESRSSQSN R S G G K S 0 0 0 0 0 4 1 11 2 0 0 1 0 2 0 10 0 0 0 0 0 0 31 0 2853.1935 CON__Q5D862;Q5D862 CON__Q5D862 953 983 FLG2 Filaggrin-2 yes no 3;4 1.0078E-50 149.84 By MS/MS By MS/MS By MS/MS 5.52 2.88 3 3 3 2 3 3 4 2 3 3 19 1 9 250930000 206370000 1122900 43438000 + 11959 90 12582 51758;51759;51760;51761;51762;51763;51764;51765;51766;51767;51768;51769;51770;51771;51772;51773;51774;51775;51776;51777;51778;51779;51780;51781;51782;51783;51784;51785;51786 43100;43101;43102;43103;43104;43105;43106;43107;43108;43109;43110;43111;43112;43113;43114;43115;43116;43117;43118;43119;43120;43121;43122;43123;43124;43125;43126;43127;43128;43129 43103 30 212600000 644790 20504000 SGSGTMNLGGSLTR YKLTSTVMLWLQTNKSGSGTMNLGGSLTRQ KSGSGTMNLGGSLTRQMEKDETVSDCSPHI K S G T R Q 0 1 1 0 0 0 0 4 0 0 2 0 1 0 0 3 2 0 0 0 0 0 14 0 1336.6405 P47756 P47756 182 195 CAPZB F-actin-capping protein subunit beta yes yes 2 4.6559E-07 164.54 By MS/MS By MS/MS 6 1 1 3 2 4 2 54027000 0 43115000 10912000 11960 837 12583;12584 51787;51788;51789;51790;51791;51792 43130;43131;43132;43133 43131 413 4 0 16343000 1822800 SGSLSLTQFADMISLK IDKGLVDRKFFDQYRSGSLSLTQFADMISL GSLSLTQFADMISLKNGVGTSSSMGSGVSD R S G L K N 1 0 0 1 0 1 0 1 0 1 3 1 1 1 0 4 1 0 0 0 0 0 16 0 1696.8706 P15924 P15924 2549 2564 DSP Desmoplakin yes yes 2 3.6147E-05 148.18 By MS/MS 3 1.41 1 1 1 1 1 5 10714000 0 10714000 0 11961 572 12585 51793;51794;51795;51796;51797 43134;43135;43136 43134 3 0 4501300 0 SGSMDPSGAHPSVR RRDDPAARMSRSSGRSGSMDPSGAHPSVRQ RSGSMDPSGAHPSVRQTPSRQPPLPHRSRG R S G V R Q 1 1 0 1 0 0 0 2 1 0 0 0 1 0 2 4 0 0 0 1 0 0 14 0 1383.6201 Q07666 Q07666 18 31 KHDRBS1 KH domain-containing, RNA-binding, signal transduction-associated protein 1 yes yes 2;3 0.00040139 101.32 By MS/MS By MS/MS 4.6 0.8 3 1 1 2 3 29809000 0 4353500 25456000 11962 1178 12586 51798;51799;51800;51801;51802 43137;43138;43139;43140 43140 4 0 1333400 4112000 SGSSFVHQASFK VSRCIACQNTKSANKSGSSFVHQASFKFGQ ANKSGSSFVHQASFKFGQGDLPKPINSDFR K S G F K F 1 0 0 0 0 1 0 1 1 0 0 1 0 2 0 4 0 0 0 1 0 0 12 0 1280.6149 P49792 P49792 1447 1458 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 2.0532E-05 152.69 By MS/MS 1 0 1 1 5159600 0 0 5159600 11963 871 12587 51803 43141 43141 1 0 0 1111700 SGTASVVCLLNNFYPR APSVFIFPPSDEQLKSGTASVVCLLNNFYP GTASVVCLLNNFYPREAKVQWKVDNALQSG K S G P R E 1 1 2 0 1 0 0 1 0 0 2 0 0 1 1 2 1 0 1 2 0 0 16 0 1796.888 P01834;P0DOX7 P01834 20 35 IGKC Ig kappa chain C region no no 2;3 9.604E-226 321.7 By MS/MS 7.33 2.36 1 2 3 32885000 32885000 0 0 11964 380;504 12588 51804;51805;51806 43142;43143;43144;43145;43146;43147 43145 6 19416000 0 0 SGTGIAAMSVMRPEQIMK AMVFSALGAAYGTAKSGTGIAAMSVMRPEQ GIAAMSVMRPEQIMKSIIPVVMAGIIAIYG K S G M K S 2 1 0 0 0 1 1 2 0 2 0 1 3 0 1 2 1 0 0 1 0 0 18 1 1905.9475 P27449 P27449 37 54 ATP6V0C V-type proton ATPase 16 kDa proteolipid subunit yes yes 2;3 1.7781E-40 216.88 By MS/MS By MS/MS 8.88 0.331 1 7 1 7 179000000 0 11433000 167570000 11965 677 12589;12590;12591 51807;51808;51809;51810;51811;51812;51813;51814 43148;43149;43150;43151;43152;43153;43154;43155;43156;43157;43158 43149 306;307;308 11 0 9154900 52934000 SGTTPKPVINSTPGR PFRTPSNGAEGLTPRSGTTPKPVINSTPGR SGTTPKPVINSTPGRTPLRDKLNINPEDGM R S G G R T 0 1 1 0 0 0 0 2 0 1 0 1 0 0 3 2 3 0 0 1 0 0 15 1 1510.8104 Q99459 Q99459 427 441 CDC5L Cell division cycle 5-like protein yes yes 3 0.022489 53.168 By matching By MS/MS By matching 2.75 0.829 2 1 1 1 2 1 12455000 1829500 7209700 3415400 11966 1843 12592 51815;51816;51817;51818 43159 43159 1 2204300 3215100 557850 SGVEVLFNELEIPVEEYSFGR MLCKQTWPHWKGPARSGVEVLFNELEIPVE FNELEIPVEEYSFGRSKIFIRNPRTLFKLE R S G G R S 0 1 1 0 0 0 5 2 0 1 2 0 0 2 1 2 0 0 1 3 0 0 21 0 2412.1849 O43795 O43795 662 682 MYO1B Unconventional myosin-Ib yes yes 2;3 3.6139E-46 212.87 By MS/MS 2 0 2 2 9918700 0 0 9918700 11967 212 12593 51819;51820 43160;43161 43160 2 0 0 2241400 SGVGNIFIK PVRIMWSQRDPSLRKSGVGNIFIKNLDKSI DPSLRKSGVGNIFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 2 0 1 0 1 0 1 0 0 0 1 0 0 9 0 933.52837 P11940;Q4VXU2;Q96DU9 P11940 96 104 PABPC1;PABPC1L;PABPC5 Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5 yes no 2 0.00048519 118.74 By MS/MS By matching 3.6 1.02 1 1 2 1 3 2 141420000 0 123810000 17606000 11968 530 12594 51821;51822;51823;51824;51825 43162;43163;43164 43163 3 0 51682000 2758400 SGVGNVFIK PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI DPSLRKSGVGNVFIKNLDKSIDNKALYDTF K S G I K N 0 0 1 0 0 0 0 2 0 1 0 1 0 1 0 1 0 0 0 2 0 0 9 0 919.51272 Q13310 Q13310 96 104 PABPC4 Polyadenylate-binding protein 4 no no 2 0.00056269 117.1 By matching By MS/MS 3.33 0.471 2 1 1 2 45461000 2084100 43376000 0 11969 1237 12595 51826;51827;51828 43165 43165 1 2404600 17953000 0 SGVISGGASDLK QRHKTVALDGTLFQKSGVISGGASDLKAKA FQKSGVISGGASDLKAKARRWDEKAVDKLK K S G L K A 1 0 0 1 0 0 0 3 0 1 1 1 0 0 0 3 0 0 0 1 0 0 12 0 1089.5666 Q14683 Q14683 649 660 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.020128 84.658 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 26133000 0 24117000 2016100 11970 1312 12596 51829;51830;51831;51832 43166;43167 43166 2 0 11226000 391030 SGVNSELVK NAMLKSICEVLDLERSGVNSELVKRILNFL VLDLERSGVNSELVKRILNFLMHPKPSGKP R S G V K R 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 9 0 931.49746 P35659 P35659 169 177 DEK Protein DEK yes yes 2 0.003518 99.7 By matching By MS/MS 3.2 1.72 1 1 1 1 1 2 3 38134000 0 2457600 35676000 11971 758 12597 51833;51834;51835;51836;51837 43168 43168 1 0 1169000 6044900 SGVNSELVKR NAMLKSICEVLDLERSGVNSELVKRILNFL LDLERSGVNSELVKRILNFLMHPKPSGKPL R S G K R I 0 1 1 0 0 0 1 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 10 1 1087.5986 P35659 P35659 169 178 DEK Protein DEK yes yes 2 0.044559 79.906 By MS/MS 5 0.816 1 1 1 3 3581500 0 3581500 0 11972 758 12598 51838;51839;51840 43169;43170 43170 2 0 1133900 0 SGVSITIDDPVR TLGDTLTRRSISQQKSGVSITIDDPVRTAQ QQKSGVSITIDDPVRTAQVPSPPRGKISNI K S G V R T 0 1 0 2 0 0 0 1 0 2 0 0 0 0 1 2 1 0 0 2 0 0 12 0 1257.6565 Q9UKV3 Q9UKV3 987 998 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.0013282 114.5 By matching By matching By MS/MS 2.33 0.471 2 1 1 1 1 19900000 5266700 1174000 13459000 11973 2184 12599 51841;51842;51843 43171 43171 1 6345700 528680 2610400 SGVSLAALK VSELITKAVAASKERSGVSLAALKKALAAA AASKERSGVSLAALKKALAAAGYDVEKNNS R S G L K K 2 0 0 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 844.50182 P10412;P16402;P16403 P16403 55 63 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.0039464 98.933 By MS/MS By MS/MS By MS/MS 5.29 2.54 2 1 2 1 2 3 2 2 2 2 8 7 4750300000 136570000 720490000 3893200000 11974 509;578;577 12600 51844;51845;51846;51847;51848;51849;51850;51851;51852;51853;51854;51855;51856;51857;51858;51859;51860 43172;43173;43174;43175;43176;43177;43178;43179;43180;43181;43182;43183;43184;43185;43186;43187;43188;43189;43190 43172 19 179870000 303580000 638110000 SGVSLAALKK VSELITKAVAASKERSGVSLAALKKALAAA ASKERSGVSLAALKKALAAAGYDVEKNNSR R S G K K A 2 0 0 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 10 1 972.59678 P10412;P16402;P16403 P16403 55 64 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 2 0.00098718 130.75 By matching By MS/MS By MS/MS 5.36 3.04 2 1 2 1 1 2 1 1 1 2 1 6 7 2980500000 1335000 1187300000 1791900000 11975 509;578;577 12601 51861;51862;51863;51864;51865;51866;51867;51868;51869;51870;51871;51872;51873;51874 43191;43192;43193;43194;43195;43196;43197;43198;43199;43200;43201;43202;43203 43192 13 1540300 598460000 307810000 SGVSLAALKKALAAAGYDVEK VSELITKAVAASKERSGVSLAALKKALAAA ALKKALAAAGYDVEKNNSRIKLGLKSLVSK R S G E K N 6 0 0 1 0 0 1 2 0 0 3 3 0 0 0 2 0 0 1 2 0 0 21 2 2061.147 P10412;P16402;P16403 P16403 55 75 HIST1H1E;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.3;Histone H1.2 no no 3;4 0.00099615 65.184 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 21994000 0 1762500 20232000 11976 509;578;577 12602 51875;51876;51877;51878 43204;43205;43206 43204 3 0 610110 3079500 SGYAFVDYPDQNWAIR FGDRKLPLAGQVLLKSGYAFVDYPDQNWAI GYAFVDYPDQNWAIRAIETLSGKVELHGKI K S G I R A 2 1 1 2 0 1 0 1 0 1 0 0 0 1 1 1 0 1 2 1 0 0 16 0 1900.8744 Q9Y6M1 Q9Y6M1 38 53 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2 2.6826E-05 150.09 By MS/MS By MS/MS 3 0 2 1 1 21504000 0 3368900 18135000 11977 2315 12603 51879;51880 43207;43208 43208 2 0 1436100 3517300 SGYGFNEPEQSR SYDSRSSLGGRDLYRSGYGFNEPEQSRFGG LYRSGYGFNEPEQSRFGGSYGGRFESSYRN R S G S R F 0 1 1 0 0 1 2 2 0 0 0 0 0 1 1 2 0 0 1 0 0 0 12 0 1369.5899 Q5BKZ1 Q5BKZ1 91 102 ZNF326 DBIRD complex subunit ZNF326 yes yes 2 3.9831E-05 148.56 By matching By MS/MS By MS/MS 3 0 3 1 1 1 29242000 6233700 5004700 18003000 11978 1434 12604 51881;51882;51883 43209;43210 43210 2 7192300 2133500 3491800 SGYRHSSWSEGEEHGYSSGHSR ESETEEDEEDTPGHKSGYRHSSWSEGEEHG WSEGEEHGYSSGHSRGTVKCRHGSNSRRLG K S G S R G 0 2 0 0 0 0 3 4 3 0 0 0 0 0 0 7 0 1 2 0 0 0 22 1 2478.0333 CON__Q5D862;Q5D862 CON__Q5D862 127 148 FLG2 Filaggrin-2 yes no 5 0.0036937 48.077 By MS/MS 9 0 1 1 1380000 1380000 0 0 + 11979 90 12605 51884 43211 43211 1 774600 0 0 SGYSSDRDR ______________________________ ______________________________ M S G D R G 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0 3 0 0 1 0 0 0 9 1 1041.4476 P17844 P17844 2 10 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 0.010805 77.923 By MS/MS 3 0 1 1 9481500 0 0 9481500 11980 588 12606 51885 43212 43212 1 0 0 1839000 SHCIAEVENDEMPADLPSLAADFVESK SSKLKECCEKPLLEKSHCIAEVENDEMPAD PADLPSLAADFVESKDVCKNYAEAKDVFLG K S H S K D 4 0 1 3 1 0 4 0 1 1 2 1 1 1 2 3 0 0 0 2 0 0 27 0 2973.3372 CON__P02768-1;P02768 CON__P02768-1 311 337 ALB Serum albumin yes no 3 1.0367E-62 201.17 By MS/MS 6.75 2.28 1 1 2 4 48056000 48056000 0 0 + 11981 44 12607;12608 51886;51887;51888;51889 43213;43214;43215;43216;43217;43218;43219 43216 20 7 28732000 0 0 SHEGETAYIR DMTYAVRKLDNTKFRSHEGETAYIRVKVDG NTKFRSHEGETAYIRVKVDGPRSPSYGRSR R S H I R V 1 1 0 0 0 0 2 1 1 1 0 0 0 0 0 1 1 0 1 0 0 0 10 0 1161.5415 Q07955 Q07955 182 191 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 6.3552E-11 168.26 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 116790000 0 36457000 80332000 11982 1179 12609 51890;51891;51892;51893 43220;43221;43222 43221 3 0 12550000 12398000 SHEGETSYIR DMEYALRKLDDTKFRSHEGETSYIRVYPER DTKFRSHEGETSYIRVYPERSTSYGYSRSR R S H I R V 0 1 0 0 0 0 2 1 1 1 0 0 0 0 0 2 1 0 1 0 0 0 10 0 1177.5364 Q13242 Q13242 172 181 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 1.836E-07 161.79 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 35446000 0 8840500 26605000 11983 1232 12610 51894;51895;51896;51897 43223;43224;43225;43226 43225 4 0 4695100 4699200 SHFEQWGTLTDCVVMR FIGGLSFETTDESLRSHFEQWGTLTDCVVM HFEQWGTLTDCVVMRDPNTKRSRGFGFVTY R S H M R D 0 1 0 1 1 1 1 1 1 0 1 0 1 1 0 1 2 1 0 2 0 0 16 0 1964.8873 P09651;Q32P51 P09651 32 47 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2;3 9.2878E-199 309.49 By matching By MS/MS By MS/MS 6 0.5 1 6 1 1 1 6 136130000 1652800 5294400 129180000 11984 490 12611;12612 51898;51899;51900;51901;51902;51903;51904;51905 43227;43228;43229;43230;43231;43232;43233;43234 43231 201 8 2200700 1832700 19387000 SHFIEIFLEELTK TEILHPSSQAPNGVKSHFIEIFLEELTKVG VKSHFIEIFLEELTKVGAEELTADQNLKFI K S H T K V 0 0 0 0 0 0 3 0 1 2 2 1 0 2 0 1 1 0 0 0 0 0 13 0 1604.845 P56182 P56182 167 179 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 3 0.009441 68.171 By MS/MS 4 0 1 1 3999500 0 0 3999500 11985 948 12613 51906 43235 43235 1 0 0 653250 SHGFAAEFK YLNTNPVGGLLEYARSHGFAAEFKLVDQSG LLEYARSHGFAAEFKLVDQSGPPHEPKFVY R S H F K L 2 0 0 0 0 0 1 1 1 0 0 1 0 2 0 1 0 0 0 0 0 0 9 0 992.47158 P55265 P55265 737 745 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.00066643 114.89 By MS/MS 2 0 1 1 13060000 0 0 13060000 11986 941 12614 51907 43236 43236 1 0 0 2951400 SHGVLGLYR PRYRGIGDCVRQTVRSHGVLGLYRGLSSLL VRQTVRSHGVLGLYRGLSSLLYGSIPKAAV R S H Y R G 0 1 0 0 0 0 0 2 1 0 2 0 0 0 0 1 0 0 1 1 0 0 9 0 1000.5454 P53007 P53007 77 85 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 0.00068518 133.12 By MS/MS By MS/MS 6 0 2 1 1 18519000 0 6346700 12172000 11987 918 12615 51908;51909 43237;43238 43238 2 0 2197000 1821100 SHISDQSPLSSK CGREKSGIQPLCPERSHISDQSPLSSKRKA PERSHISDQSPLSSKRKALEESESSQLISP R S H S K R 0 0 0 1 0 1 0 0 1 1 1 1 0 0 1 5 0 0 0 0 0 0 12 0 1284.631 P42166 P42166 345 356 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 8.0537E-46 224.58 By MS/MS 3 0 1 1 12992000 0 0 12992000 11988 798 12616 51910 43239 43239 1 0 0 2519700 SHLEVPLEENVNR DHQLREAPDTAEKAKSHLEVPLEENVNRRV AKSHLEVPLEENVNRRVLEEGSVEARTIED K S H N R R 0 1 2 0 0 0 3 0 1 0 2 0 0 0 1 1 0 0 0 2 0 0 13 0 1534.774 Q96CT7 Q96CT7 122 134 CCDC124 Coiled-coil domain-containing protein 124 yes yes 3 5.7578E-05 138.42 By matching By MS/MS 6.33 0.471 2 1 1 2 25092000 763000 0 24329000 11989 1761 12617 51911;51912;51913 43240 43240 1 1015900 0 3694200 SHLEVPLEENVNRR DHQLREAPDTAEKAKSHLEVPLEENVNRRV KSHLEVPLEENVNRRVLEEGSVEARTIEDA K S H R R V 0 2 2 0 0 0 3 0 1 0 2 0 0 0 1 1 0 0 0 2 0 0 14 1 1690.8751 Q96CT7 Q96CT7 122 135 CCDC124 Coiled-coil domain-containing protein 124 yes yes 3 0.0005962 94.551 By MS/MS 6 0 1 1 40830000 0 0 40830000 11990 1761 12618 51914 43241 43241 1 0 0 6108600 SHLMSLYSACSSEVPHGPVDQK DEVVNKFLDDLGNAKSHLMSLYSACSSEVP SACSSEVPHGPVDQKFQSIVIGCALEDQKK K S H Q K F 1 0 0 1 1 1 1 1 2 0 2 1 1 0 2 5 0 0 1 2 0 0 22 0 2428.1151 O95816 O95816 133 154 BAG2 BAG family molecular chaperone regulator 2 yes yes 3 1.9636E-14 112.44 By MS/MS 7 0 1 1 5778900 0 0 5778900 11991 342 12619 51915 43242 43242 1 0 0 1025400 SHQSSYGQHGSGSSQSSGYGQHGSSSGQTFGFGQHR TGSGQYSGFGQHESRSHQSSYGQHGSGSSQ HGSSSGQTFGFGQHRSGSGQSSGFGQHGSG R S H H R S 0 1 0 0 0 6 0 9 4 0 0 0 0 2 0 11 1 0 2 0 0 0 36 0 3682.5554 CON__Q5D862;Q5D862 CON__Q5D862 917 952 FLG2 Filaggrin-2 yes no 5 3.5563E-64 147.3 By MS/MS By MS/MS 5 3.41 2 1 2 1 1 2 1 5 5 100380000 70855000 0 29524000 + 11992 90 12620 51916;51917;51918;51919;51920;51921;51922;51923;51924;51925 43243;43244;43245;43246;43247;43248;43249;43250 43246 8 62803000 0 6623500 SHQSSYGQHGSGSSQSSGYGQHGSSSGQTSGFGQHR SGSGQSSGFGQHESRSHQSSYGQHGSGSSQ HGSSSGQTSGFGQHRSSSGQYSGFGQHGSG R S H H R S 0 1 0 0 0 6 0 9 4 0 0 0 0 1 0 12 1 0 2 0 0 0 36 0 3622.5191 CON__Q5D862;Q5D862 CON__Q5D862 840 875 FLG2 Filaggrin-2 yes no 5 0.058458 15.871 By MS/MS 7 0 1 1 1638500 0 0 1638500 + 11993 90 12621 51926 43251 43251 1 0 0 290750 SHQTGIQASEDVK ______________________________ ______________________________ M S H V K E 1 0 0 1 0 2 1 1 1 1 0 1 0 0 0 2 1 0 0 1 0 0 13 0 1398.6739 Q12792 Q12792 2 14 TWF1 Twinfilin-1 yes yes 2 4.8105E-45 218.62 By matching By MS/MS 5.67 0.471 1 2 2 1 13885000 0 4273000 9612300 11994 1199 12622 51927;51928;51929 43252 43252 1 0 1411500 1438100 SHQTGIQASEDVKEIFAR ______________________________ TGIQASEDVKEIFARARNGKYRLLKISIEN M S H A R A 2 1 0 1 0 2 2 1 1 2 0 1 0 1 0 2 1 0 0 1 0 0 18 1 2015.0072 Q12792 Q12792 2 19 TWF1 Twinfilin-1 yes yes 3 7.0081E-13 168.09 By MS/MS 6 0 1 1 7664800 0 7664800 0 11995 1199 12623 51930 43253 43253 1 0 2653300 0 SHRPFVNFGRPEGGK RPPGEDFRSPPDDFRSHRPFVNFGRPEGGK SHRPFVNFGRPEGGKFDFGKHNMGSFPEGR R S H G K F 0 2 1 0 0 0 1 3 1 0 0 1 0 2 2 1 0 0 0 1 0 0 15 2 1683.8594 Q8IXT5 Q8IXT5 881 895 RBM12B RNA-binding protein 12B yes yes 4 0.028425 51.265 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 47849000 0 8869300 38980000 11996 1587 12624 51931;51932;51933 43254;43255;43256 43254 3 0 3994000 8723200 SHSSFQASLTGR LLLVFAVGFLCHDLRSHSSFQASLTGRLLR DLRSHSSFQASLTGRLLRSSGFLPASQQAC R S H G R L 1 1 0 0 0 1 0 1 1 0 1 0 0 1 0 4 1 0 0 0 0 0 12 0 1276.616 Q6NUQ4 Q6NUQ4 503 514 TMEM214 Transmembrane protein 214 yes yes 2 8.6544E-06 158.79 By MS/MS 3 0 1 1 6706800 0 0 6706800 11997 1481 12625 51934 43257 43257 1 0 0 1300800 SHSTEPGLVLTLGQGDVGQLGLGENVMER ADAIPKSKKVKVSHRSHSTEPGLVLTLGQG GDVGQLGLGENVMERKKPALVSIPEDVVQA R S H E R K 0 1 1 1 0 2 3 6 1 0 5 0 1 0 1 2 2 0 0 3 0 0 29 0 2992.4924 P18754 P18754 29 57 RCC1 Regulator of chromosome condensation yes yes 3;4 8.949E-22 108.32 By MS/MS 3.5 1.5 1 1 2 17234000 0 0 17234000 11998 599 12626 51935;51936 43258;43259 43258 2 0 0 3184200 SHTILLVQPTK ______________________________ ______________________________ M S H T K R 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1235.7238 P84090 P84090 2 12 ERH Enhancer of rudimentary homolog yes yes 2;3 7.1748E-90 250.12 By MS/MS By MS/MS By MS/MS 8.75 1.23 1 1 2 4 4 2 3 7 2920400000 83046000 1115700000 1721700000 11999 1110 12627 51937;51938;51939;51940;51941;51942;51943;51944;51945;51946;51947;51948 43260;43261;43262;43263;43264;43265;43266;43267;43268;43269;43270;43271 43263 12 76751000 4884200000 698570000 SHTILLVQPTKR ______________________________ ______________________________ M S H K R P 0 1 0 0 0 1 0 0 1 1 2 1 0 0 1 1 2 0 0 1 0 0 12 1 1391.8249 P84090 P84090 2 13 ERH Enhancer of rudimentary homolog yes yes 3 0.00054404 106.67 By MS/MS 10 0 1 1 4469300 0 4469300 0 12000 1110 12628 51949 43272 43272 1 0 22611000 0 SHTILLVQPTKRPEGR ______________________________ HTILLVQPTKRPEGRTYADYESVNECMEGV M S H G R T 0 2 0 0 0 1 1 1 1 1 2 1 0 0 2 1 2 0 0 1 0 0 16 2 1831.0428 P84090 P84090 2 17 ERH Enhancer of rudimentary homolog yes yes 2;3;4 4.3792E-19 190.15 By MS/MS By MS/MS 9.5 0.5 2 2 3 1 31284000 0 28593000 2690600 12001 1110 12629 51950;51951;51952;51953 43273;43274;43275;43276 43276 4 0 139390000 859500 SHVAVENALGLDQQFAGLDLNSSDNQSGGSTASK ______________________________ LNSSDNQSGGSTASKGRYIPPHLRNREATK M S H S K G 4 0 3 3 0 3 1 4 1 0 4 1 0 1 0 6 1 0 0 2 0 0 34 0 3416.608 O00571 O00571 2 35 DDX3X ATP-dependent RNA helicase DDX3X yes yes 4 5.1971E-21 81.876 By MS/MS 3 0 1 1 28278000 0 0 28278000 12002 131 12630 51954 43277 43277 1 0 0 5484700 SHVEDGDIAGAPASSPEAPPAEQDPVQLK SDELALVRQQLSEMKSHVEDGDIAGAPASS SPEAPPAEQDPVQLKTQLEWTEAILEDEQT K S H L K T 5 0 0 3 0 2 3 2 1 1 1 1 0 0 5 3 0 0 0 2 0 0 29 0 2911.3836 Q9P2E9 Q9P2E9 1263 1291 RRBP1 Ribosome-binding protein 1 yes yes 3 3.2101E-11 84.169 By MS/MS 2 0 1 1 7594100 0 0 7594100 12003 2122 12631 51955 43278 43278 1 0 0 1716100 SHVKDHYIFYCEGELHGKPVR KYTADGGKHVAYIIRSHVKDHYIFYCEGEL YIFYCEGELHGKPVRGVKLVGRDPKNNLEA R S H V R G 0 1 0 1 1 0 2 2 3 1 1 2 0 1 1 1 0 0 2 2 0 0 21 2 2570.2489 P31025 P31025 109 129 LCN1 Lipocalin-1 yes yes 4;5 2.9677E-06 89.663 By MS/MS 7.75 1.56 1 1 1 2 2 1 8 128230000 128230000 0 0 12004 716 12632 51956;51957;51958;51959;51960;51961;51962;51963 43279;43280;43281 43281 3 106960000 0 0 SHVLQLTNHQVHR GLNVTLSSLGRSGLKSHVLQLTNHQVHRLE LKSHVLQLTNHQVHRLEEELQFSLGSKINV K S H H R L 0 1 1 0 0 2 0 0 3 0 2 0 0 0 0 1 1 0 0 2 0 0 13 0 1567.8332 CON__ENSEMBL:ENSBTAP00000007350;CON__P01030 CON__ENSEMBL:ENSBTAP00000007350 1339 1351 yes no 3 0.0095592 67.964 By MS/MS 8 0 1 1 3662300 3662300 0 0 + 12005 25 12633 51964 43282 43282 1 3144200 0 0 SIAANMTFAEIVTPFNIDR TPDPNLSIDQVGVPRSIAANMTFAEIVTPF NMTFAEIVTPFNIDRLQELVRRGNSQYPGA R S I D R L 3 1 2 1 0 0 1 0 0 3 0 0 1 2 1 1 2 0 0 1 0 0 19 0 2109.0565 P24928 P24928 383 401 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.0042247 67.275 By MS/MS 1 0 1 1 1296600 0 0 1296600 12006 653 12634 51965 43283 43283 1 0 0 279370 SIAFHSAVSLDPIK EYIPEGEILVITYGRSIAFHSAVSLDPIKS RSIAFHSAVSLDPIKSFEAPATINSASLHP R S I I K S 2 0 0 1 0 0 0 0 1 2 1 1 0 1 1 3 0 0 0 1 0 0 14 0 1483.8035 Q9Y3F4 Q9Y3F4 205 218 STRAP Serine-threonine kinase receptor-associated protein yes yes 3 0.011918 61.409 By MS/MS By matching 5.67 0.471 1 2 2 1 11912000 0 9554000 2358400 12007 2275 12635 51966;51967;51968 43284 43284 1 0 3001800 352840 SIAFPSIGSGR TVKNCLALADDKKLKSIAFPSIGSGRNGFP KKLKSIAFPSIGSGRNGFPKQTAAQLILKA K S I G R N 1 1 0 0 0 0 0 2 0 2 0 0 0 1 1 3 0 0 0 0 0 0 11 0 1090.5771 O75367 O75367 308 318 H2AFY Core histone macro-H2A.1 yes yes 2 6.3378E-10 171.56 By MS/MS By MS/MS By MS/MS 3.73 1.66 1 2 2 2 3 1 1 4 6 669250000 20210000 180990000 468050000 12008 253 12636 51969;51970;51971;51972;51973;51974;51975;51976;51977;51978;51979 43285;43286;43287;43288;43289;43290;43291;43292;43293;43294;43295;43296;43297;43298;43299;43300;43301 43292 16 16191000 49896000 69754000 SIAPSIFGGTDMK RRLAALPNVYEVISKSIAPSIFGGTDMKKA SKSIAPSIFGGTDMKKAIACLLFGGSRKRL K S I M K K 1 0 0 1 0 0 0 2 0 2 0 1 1 1 1 2 1 0 0 0 0 0 13 0 1322.654 P33992 P33992 338 350 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.0013105 110.84 By MS/MS By MS/MS 3 0 2 1 1 13830000 0 4125900 9703800 12009 732 12637 51980;51981 43302;43303 43302 2 0 1758900 1882100 SIAPSIFGGTDMKK RRLAALPNVYEVISKSIAPSIFGGTDMKKA KSIAPSIFGGTDMKKAIACLLFGGSRKRLP K S I K K A 1 0 0 1 0 0 0 2 0 2 0 2 1 1 1 2 1 0 0 0 0 0 14 1 1450.749 P33992 P33992 338 351 MCM5 DNA replication licensing factor MCM5 yes yes 3 0.033046 47.545 By MS/MS 3 0 1 1 3762000 0 3762000 0 12010 732 12638 51982 43304 43304 1 0 1603700 0 SIAQYWLGCPVPGQA LRTRRVDAVIPPYPRSIAQYWLGCPVPGQA SIAQYWLGCPVPGQA_______________ R S I Q A - 2 0 0 0 1 2 0 2 0 1 1 0 0 0 2 1 0 1 1 1 0 0 15 0 1645.7923 CON__Q3ZBS7 CON__Q3ZBS7 470 484 yes yes 2 0.0055556 82.417 By MS/MS By MS/MS 9 0 2 1 1 46553000 15998000 0 30555000 + 12011 88 12639 51983;51984 43305;43306;43307 43305 3 8980000 0 9760500 SIATLAITTLLK ACNLDLENLVTDSNRSIATLAITTLLKTGS SNRSIATLAITTLLKTGSESSIDRLMKQIS R S I L K T 2 0 0 0 0 0 0 0 0 2 3 1 0 0 0 1 3 0 0 0 0 0 12 0 1243.7751 Q9Y678;Q9UBF2 Q9Y678 339 350 COPG1;COPG2 Coatomer subunit gamma-1;Coatomer subunit gamma-2 yes no 2 0.018166 85.958 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 3 2 10396000 0 1806600 8589200 12012 2308 12640 51985;51986;51987;51988;51989 43308;43309 43308 2 0 810500 1630500 SICEVLDLER KKEEMLKKFRNAMLKSICEVLDLERSGVNS NAMLKSICEVLDLERSGVNSELVKRILNFL K S I E R S 0 1 0 1 1 0 2 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1232.6071 P35659 P35659 159 168 DEK Protein DEK yes yes 2 8.3005E-08 162.97 By matching By MS/MS 4.75 0.829 2 1 1 1 3 39681000 2404600 0 37277000 12013 758 12641 51990;51991;51992;51993 43310;43311;43312 43311 3 1876000 0 5544400 SICTTVLELLDK QLIKDYREKVESELRSICTTVLELLDKYLI ELRSICTTVLELLDKYLIANATNPESKVFY R S I D K Y 0 0 0 1 1 0 1 0 0 1 3 1 0 0 0 1 2 0 0 1 0 0 12 0 1390.7378 P27348 P27348 92 103 YWHAQ 14-3-3 protein theta yes yes 2 0.012302 90.685 By MS/MS 6.5 0.5 1 1 2 5213400 0 0 5213400 12014 676 12642 51994;51995 43313;43314 43313 2 0 0 866450 SIDAGPVDAWTLAFSPDSQYLATGTHVGK AHIRLWDLENGKQIKSIDAGPVDAWTLAFS SPDSQYLATGTHVGKVNIFGVESGKKEYSL K S I G K V 4 0 0 3 0 1 0 3 1 1 2 1 0 1 2 3 3 1 1 2 0 0 29 0 3003.4614 Q9GZS3 Q9GZS3 101 129 WDR61 WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed yes yes 3 0.016807 25.499 By MS/MS By matching 6 0 2 1 1 13995000 0 1213700 12781000 12015 1954 12643 51996;51997 43315 43315 1 0 420140 1912200 SIDGTADDEDEGVPTDQAIR IDTESISALIKQVNKSIDGTADDEDEGVPT ADDEDEGVPTDQAIRAGLELLKVLSFTHPI K S I I R A 2 1 0 5 0 1 2 2 0 2 0 0 0 0 1 1 2 0 0 1 0 0 20 0 2102.924 Q9NTI5 Q9NTI5 628 647 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 8.2423E-36 198.23 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 66003000 0 2077200 63926000 12016 2053 12644 51998;51999;52000 43316;43317;43318 43317 3 0 1015300 14047000 SIDMSWDSVTMK EDTIRQAFAPFGPIKSIDMSWDSVTMKHKG PIKSIDMSWDSVTMKHKGFAFVEYEVPEAA K S I M K H 0 0 0 2 0 0 0 0 0 1 0 1 2 0 0 3 1 1 0 1 0 0 12 0 1398.6159 Q9UHX1 Q9UHX1 157 168 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 0.026007 80.763 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 22310000 0 6173700 16136000 12017 2158 12645 52001;52002;52003 43319;43320 43320 2 0 2048800 2847600 SIDQFANLVLHQTVER LVLLRDGRTLIGFLRSIDQFANLVLHQTVE IDQFANLVLHQTVERIHVGKKYGDIPRGIF R S I E R I 1 1 1 1 0 2 1 0 1 1 2 0 0 1 0 1 1 0 0 2 0 0 16 0 1868.9745 O15116 O15116 34 49 LSM1 U6 snRNA-associated Sm-like protein LSm1 yes yes 3 0.0091448 55.546 By MS/MS By MS/MS 8 0 2 1 1 8021800 0 1712400 6309400 12018 165 12646 52004;52005 43321;43322 43322 2 0 779100 967290 SIEALLEAGQAR QEARAENSQLTERIRSIEALLEAGQARDAQ RIRSIEALLEAGQARDAQDVQASQAEADQQ R S I A R D 3 1 0 0 0 1 2 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 12 0 1256.6725 Q9P2E9 Q9P2E9 959 970 RRBP1 Ribosome-binding protein 1 yes yes 2 6.9858E-06 159.79 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 1 2 24632000 3670300 2661800 18299000 12019 2122 12647 52006;52007;52008;52009 43323;43324;43325 43324 3 4422200 1198700 4039900 SIEEIVR GIGPKRAVDLIQKHKSIEEIVRRLDPNKYP VDLIQKHKSIEEIVRRLDPNKYPVPENWLH K S I V R R 0 1 0 0 0 0 2 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 7 0 844.46543 P39748 P39748 255 261 FEN1 Flap endonuclease 1 yes yes 2 0.033493 89.673 By MS/MS 5 0 1 1 65135000 0 0 65135000 12020 780 12648 52010 43326 43326 1 0 0 9085200 SIEEQLGTEIKPIPSNIDK LAINLITYDDRFNLKSIEEQLGTEIKPIPS QLGTEIKPIPSNIDKSLYVAEYHSEPVEDE K S I D K S 0 0 1 1 0 1 3 1 0 4 1 2 0 0 2 2 1 0 0 0 0 0 19 1 2110.1158 P26196 P26196 448 466 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 3 0.00013979 83.776 By MS/MS 4 0 1 1 21369000 0 0 21369000 12021 665 12649 52011 43327 43327 1 0 0 3490300 SIEGTADDEEEGVSPDTAIR IDSEAISALVKLMNKSIEGTADDEEEGVSP ADDEEEGVSPDTAIRSGLELLKVLSFTHPT K S I I R S 2 1 0 3 0 0 4 2 0 2 0 0 0 0 1 2 2 0 0 1 0 0 20 0 2089.9288 Q29RF7 Q29RF7 638 657 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 8.2423E-36 198.23 By MS/MS 2 0 1 1 7717500 0 0 7717500 12022 1405 12650 52012 43328 43328 1 0 0 1744000 SIEIESSDVIR ______________________________ ______________________________ M S I I R L 0 1 0 1 0 0 2 0 0 3 0 0 0 0 0 3 0 0 0 1 0 0 11 0 1246.6405 Q2TAY7 Q2TAY7 2 12 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 0.00015838 121.73 By MS/MS By matching 4.5 0.5 1 1 1 1 6385200 0 2736400 3648800 12023 1407 12651 52013;52014 43329 43329 1 0 908130 508940 SIEIKDELKK QDPLNETHLQTTSGRSIEIKDELKKKKNLN TTSGRSIEIKDELKKKKNLNRSGKRGRPSG R S I K K K 0 0 0 1 0 0 2 0 0 2 1 3 0 0 0 1 0 0 0 0 0 0 10 2 1201.6918 Q7Z6I8 Q7Z6I8 71 80 C5orf24 UPF0461 protein C5orf24 yes yes 3 0.046141 57.785 By matching By MS/MS 7 0 2 1 1 12902000 0 1102100 11800000 12024 1534 12652 52015;52016 43330 43330 1 0 632810 2093800 SIEIPRPVDGVEVPGCGK VEDVRDECSKYGLVKSIEIPRPVDGVEVPG IPRPVDGVEVPGCGKIFVEFTSVFDCQKAM K S I G K I 0 1 0 1 1 0 2 3 0 2 0 1 0 0 3 1 0 0 0 3 0 0 18 1 1907.9775 P26368 P26368 414 431 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2;3 2.3756E-07 115.82 By MS/MS 4 0 2 2 20479000 0 0 20479000 12025 668 12653 52017;52018 43331;43332 43332 2 0 0 3344900 SIEPLTYGR ELELSYCIEIGEDNRSIEPLTYGRIASYYY IGEDNRSIEPLTYGRIASYYYLKHQTVKMF R S I G R I 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 1 1 0 1 0 0 0 9 0 1034.5397 Q8N3C0 Q8N3C0 1809 1817 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.0021346 105.25 By MS/MS 1 0 1 1 7376300 0 7376300 0 12026 1602 12654 52019 43333 43333 1 0 3605400 0 SIESTLDDLFR EMADPKSELFGETARSIESTLDDLFRNSDV ETARSIESTLDDLFRNSDVKKDFRSVRLRD R S I F R N 0 1 0 2 0 0 1 0 0 1 2 0 0 1 0 2 1 0 0 0 0 0 11 0 1294.6405 O00468 O00468 1168 1178 AGRN Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment yes yes 2 0.0033947 105.4 By MS/MS 1 0 1 1 1524400 0 0 1524400 12027 123 12655 52020 43334 43334 1 0 0 328460 SIETLLEAAR ______________________________ ______________________________ M S I A R F 2 1 0 0 0 0 2 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1101.603 Q99583 Q99583 2 11 MNT Max-binding protein MNT yes yes 2 0.0013436 98.033 By MS/MS 3 0 1 1 0 0 0 0 12028 1852 12656 52021 43335 43335 1 0 0 0 SIFLFLDR DRCWQNHCRQMIMIRSIFLFLDRTYVLQNS RQMIMIRSIFLFLDRTYVLQNSMLPSIWDM R S I D R T 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 Q13620;Q13619 Q13620 305 312 CUL4B;CUL4A Cullin-4B;Cullin-4A yes no 2 0.00020546 139.31 By matching By MS/MS 2.33 0.471 2 1 1 2 5630900 0 315680 5315300 12029 1264 12657 52022;52023;52024 43336;43337 43336 2 0 142150 1135100 SIFQHIQSAQSQR CRDLVHSNKKEQEFRSIFQHIQSAQSQRSP FRSIFQHIQSAQSQRSPSELFAQHIVTIVH R S I Q R S 1 1 0 0 0 4 0 0 1 2 0 0 0 1 0 3 0 0 0 0 0 0 13 0 1528.7746 Q9Y2W1 Q9Y2W1 609 621 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2;3 9.3811E-35 216.35 By MS/MS By MS/MS 2.54 1.22 3 4 3 2 1 6 7 593650000 0 145970000 447690000 12030 2252 12658 52025;52026;52027;52028;52029;52030;52031;52032;52033;52034;52035;52036;52037 43338;43339;43340;43341;43342;43343;43344;43345;43346;43347;43348;43349 43347 12 0 63832000 96640000 SIFYVPDMKPSMFDVSR RYTLHYKTDAPLNIRSIFYVPDMKPSMFDV FYVPDMKPSMFDVSRELGSSVALYSRKVLI R S I S R E 0 1 0 2 0 0 0 0 0 1 0 1 2 2 2 3 0 0 1 2 0 0 17 1 2017.9642 Q12931 Q12931 341 357 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 3 0.016808 49.606 By MS/MS 3 0 1 1 1704000 0 1704000 0 12031 1212 12659 52038 43350 43350 1 0 726400 0 SIGEYDVLR PPDVLRWVELAKLYRSIGEYDVLRGIFTSE LAKLYRSIGEYDVLRGIFTSEIGTKQITQS R S I L R G 0 1 0 1 0 0 1 1 0 1 1 0 0 0 0 1 0 0 1 1 0 0 9 0 1050.5346 P78527 P78527 2932 2940 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00040447 120.46 By MS/MS 1 0 1 1 22879000 0 0 22879000 12032 1089 12660 52039 43351 43351 1 0 0 4929700 SIGMDPSDIYAVIQIPGSR ACPTRDFVVGALILRSIGMDPSDIYAVIQI DPSDIYAVIQIPGSREFDVSFRSAEKLALF R S I S R E 1 1 0 2 0 1 0 2 0 4 0 0 1 0 2 3 0 0 1 1 0 0 19 0 2018.0143 Q9NUD5 Q9NUD5 192 210 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 2 2.0008E-06 109.22 By matching By MS/MS 4.5 0.5 1 1 1 1 18580000 14045000 0 4534600 12033 2057 12661 52040;52041 43352 43352 1 10958000 0 632490 SIGSAVDQGNESIVAK RQFVDGPPGPVKKTRSIGSAVDQGNESIVA IGSAVDQGNESIVAKTTVTVPNDGGPIEAV R S I A K T 2 0 1 1 0 1 1 2 0 2 0 1 0 0 0 3 0 0 0 2 0 0 16 0 1573.7948 Q9H0H5 Q9H0H5 203 218 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 1.9392E-12 176.05 By MS/MS 3 0.816 1 1 1 3 25104000 0 25104000 0 12034 1963 12662 52042;52043;52044 43353;43354 43353 2 0 10214000 0 SIGTANRPMGAGEALR WGPLRGWPLELLCEKSIGTANRPMGAGEAL IGTANRPMGAGEALRRVLECLASGIVMPDG K S I L R R 3 2 1 0 0 0 1 3 0 1 1 0 1 0 1 1 1 0 0 0 0 0 16 1 1599.8151 Q12906 Q12906 258 273 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 5.6088E-18 193 By MS/MS By MS/MS 3.14 1.77 3 6 6 3 3 1 11 11 680000000 0 297770000 382230000 12035 1211 12663;12664 52045;52046;52047;52048;52049;52050;52051;52052;52053;52054;52055;52056;52057;52058;52059;52060;52061;52062;52063;52064;52065;52066 43355;43356;43357;43358;43359;43360;43361;43362;43363;43364;43365;43366;43367;43368;43369;43370;43371;43372 43371 573 18 0 130460000 80165000 SIGTANRPMGAGEALRR WGPLRGWPLELLCEKSIGTANRPMGAGEAL GTANRPMGAGEALRRVLECLASGIVMPDGS K S I R R V 3 3 1 0 0 0 1 3 0 1 1 0 1 0 1 1 1 0 0 0 0 0 17 2 1755.9162 Q12906 Q12906 258 274 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 0.00021071 94.487 By MS/MS By MS/MS 2.38 0.857 1 4 2 1 6 2 87779000 0 67296000 20483000 12036 1211 12665 52067;52068;52069;52070;52071;52072;52073;52074 43373;43374;43375;43376;43377;43378 43373 6 0 29618000 4628700 SIGVYDVVELK FSWWTTDQQLIQVIRSIGVYDVVELKFAEN QVIRSIGVYDVVELKFAENRANGQSKGYAE R S I L K F 0 0 0 1 0 0 1 1 0 1 1 1 0 0 0 1 0 0 1 3 0 0 11 0 1220.6653 Q8N684 Q8N684 104 114 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 0.012005 88.681 By MS/MS By matching 4.5 0.5 1 1 1 1 12339000 0 10434000 1905100 12037 1610 12666 52075;52076 43379 43379 1 0 3462800 265730 SIIGMIDMFHK ______________________________ QAERSIIGMIDMFHKYTRRDDKIEKPSLLT R S I H K Y 0 0 0 1 0 0 0 1 1 3 0 1 2 1 0 1 0 0 0 0 0 0 11 0 1290.6464 P31151;Q86SG5 P31151 9 19 S100A7;S100A7A Protein S100-A7;Protein S100-A7A yes no 2;3 0.0003279 127.3 By MS/MS By matching By MS/MS 6.94 2.6 2 3 2 2 3 5 4 8 5 27 1 6 172350000 147640000 1013100 23692000 12038 718 12667;12668;12669 52077;52078;52079;52080;52081;52082;52083;52084;52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110 43380;43381;43382;43383;43384;43385;43386;43387;43388;43389;43390;43391;43392;43393;43394;43395;43396;43397;43398;43399;43400 43388 315;316 19 130360000 460930 6485000 SIILEGFK ______________________________ ______________________________ K S I F K S 0 0 0 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 0 0 0 8 0 905.52222 O95347 O95347 5 12 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.041319 75.109 By MS/MS 1.5 0.5 1 1 2 8287000 0 0 8287000 12039 321 12670 52111;52112 43401;43402 43402 2 0 0 1842000 SIITYVSSLYDAMPR LLDPEDVDVPQPDEKSIITYVSSLYDAMPR SIITYVSSLYDAMPRVPDVQDGVRANELQL K S I P R V 1 1 0 1 0 0 0 0 0 2 1 0 1 0 1 3 1 0 2 1 0 0 15 0 1714.86 Q15149 Q15149 387 401 PLEC Plectin yes yes 2 7.1068E-05 156.71 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 8802700 0 986200 7816500 12040 1348 12671 52113;52114;52115 43403;43404 43404 2 0 482040 1689100 SIKDYGVFIQFPSGLSGLAPK FSEIHPGMLLIGFVKSIKDYGVFIQFPSGL VFIQFPSGLSGLAPKAIMSDKFVTSTSDHF K S I P K A 1 0 0 1 0 1 0 3 0 2 2 2 0 2 2 3 0 0 1 1 0 0 21 1 2223.194 Q14690 Q14690 738 758 PDCD11 Protein RRP5 homolog yes yes 3 0.019056 40.012 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 10101000 0 1359800 8740700 12041 1314 12672 52116;52117;52118 43405;43406 43405 2 0 612350 1908800 SILALAFQANPNSEEIWLAAVK GAKSKWLAGDVPAARSILALAFQANPNSEE QANPNSEEIWLAAVKLESENDEYERARRLL R S I V K L 5 0 2 0 0 1 2 0 0 2 3 1 0 1 1 2 0 1 0 1 0 0 22 0 2384.274 O94906 O94906 629 650 PRPF6 Pre-mRNA-processing factor 6 yes yes 3 0.025423 33.676 By MS/MS 2 0 1 1 546270 0 0 546270 12042 305 12673 52119 43407 43407 1 0 0 123450 SILDQLDWIVNK NSITEEVLDHMGTFRSILDQLDWIVNKFKE TFRSILDQLDWIVNKFKEDSSLELFLLIHN R S I N K F 0 0 1 2 0 1 0 0 0 2 2 1 0 0 0 1 0 1 0 1 0 0 12 0 1442.7769 Q13416 Q13416 368 379 ORC2 Origin recognition complex subunit 2 yes yes 2 0.0018789 110.14 By MS/MS 3 0 1 1 3864300 0 0 3864300 12043 1244 12674 52120 43408 43408 1 0 0 749500 SILEQLAEK WHFEEAVDGECPPQRSILEQLAEKNFELVI ECPPQRSILEQLAEKNFELVINLSMRGAGG R S I E K N 1 0 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 9 0 1029.5706 P27708 P27708 1379 1387 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.014774 85.67 By MS/MS 1 0 1 1 9816700 0 9816700 0 12044 681 12675 52121 43409 43409 1 0 4798300 0 SILEYLR RDKRLEKMVSGCQTRSILEYLRVGGRGGGK MVSGCQTRSILEYLRVGGRGGGKGKGRAEG R S I L R V 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 0 0 1 0 0 0 7 0 892.50182 Q8N1G4 Q8N1G4 253 259 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.0023039 143.37 By matching By MS/MS By MS/MS 4 1.15 3 1 1 1 1 2 3 29420000 1478300 7205000 20737000 12045 1600 12676 52122;52123;52124;52125;52126;52127 43410;43411 43410 2 1705600 2928500 3888200 SILFVPTSAPR MAYIHFTAEGEVTFKSILFVPTSAPRGLFD VTFKSILFVPTSAPRGLFDEYGSKKSDYIK K S I P R G 1 1 0 0 0 0 0 0 0 1 1 0 0 1 2 2 1 0 0 1 0 0 11 0 1186.671 P14625 P14625 385 395 HSP90B1 Endoplasmin yes yes 2 7.3142E-08 120.31 By MS/MS 4 3.54 1 1 1 1 4 36996000 0 0 36996000 12046 560 12677 52128;52129;52130;52131 43412;43413 43412 1 0 0 20486000 SILLDMATR DGTARIWQFKRREWKSILLDMATRPAGQNL KRREWKSILLDMATRPAGQNLQGIEDKITK K S I T R P 1 1 0 1 0 0 0 0 0 1 2 0 1 0 0 1 1 0 0 0 0 0 9 0 1018.5481 Q8WWQ0;Q9NSI6 Q8WWQ0 401 409 PHIP;BRWD1 PH-interacting protein;Bromodomain and WD repeat-containing protein 1 yes no 2 0.00060258 116.25 By MS/MS 1 0 1 1 3402200 0 0 3402200 12047 1690 12678 52132 43414 43414 1 0 0 733050 SILLDMATRPAGQNLQGIEDK DGTARIWQFKRREWKSILLDMATRPAGQNL ATRPAGQNLQGIEDKITKMKVTMVAWDRHD K S I D K I 2 1 1 2 0 2 1 2 0 2 3 1 1 0 1 1 1 0 0 0 0 0 21 1 2269.1736 Q8WWQ0 Q8WWQ0 401 421 PHIP PH-interacting protein yes yes 3 2.7443E-14 126.69 By MS/MS By MS/MS 1 0 2 1 1 18749000 0 4079900 14669000 12048 1690 12679 52133;52134 43415;43416 43416 2 0 1994200 3160600 SILLSVPLLVVDNK LTTVGKFEEAVEKFRSILLSVPLLVVDNKQ RSILLSVPLLVVDNKQEIAEAQQLITICRE R S I N K Q 0 0 1 1 0 0 0 0 0 1 4 1 0 0 1 2 0 0 0 3 0 0 14 0 1508.9178 P53621 P53621 1031 1044 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0033863 94.767 By MS/MS 2 0 1 1 2114500 0 2114500 0 12049 922 12680 52135 43417 43417 1 0 952190 0 SILLTEQALAK SSRQELNPLKSIVEKSILLTEQALAKAGKG IVEKSILLTEQALAKAGKGMHGGVPGGKQF K S I A K A 2 0 0 0 0 1 1 0 0 1 3 1 0 0 0 1 1 0 0 0 0 0 11 0 1185.6969 Q9GZZ8 Q9GZZ8 91 101 LACRT Extracellular glycoprotein lacritin yes yes 2 0.00032773 126.07 By MS/MS By matching 5.3 2.79 2 1 1 1 3 1 1 9 1 2040600000 2038700000 0 1917300 12050 1956 12681 52136;52137;52138;52139;52140;52141;52142;52143;52144;52145 43418;43419;43420;43421;43422;43423;43424;43425;43426 43426 9 2066300000 0 340210 SILTQIDHILMDK LASGKLGKGFGAFERSILTQIDHILMDKER ERSILTQIDHILMDKERLLRRTQTKRSVYR R S I D K E 0 0 0 2 0 1 0 0 1 3 2 1 1 0 0 1 1 0 0 0 0 0 13 0 1525.8174 Q9NY61 Q9NY61 391 403 AATF Protein AATF yes yes 3 0.037394 49.31 By MS/MS 3 0 1 1 3332300 0 0 3332300 12051 2094 12682 52146 43427 43427 1 0 0 646310 SILTQIDHILMDKER LASGKLGKGFGAFERSILTQIDHILMDKER SILTQIDHILMDKERLLRRTQTKRSVYRVL R S I E R L 0 1 0 2 0 1 1 0 1 3 2 1 1 0 0 1 1 0 0 0 0 0 15 1 1810.9611 Q9NY61 Q9NY61 391 405 AATF Protein AATF yes yes 3 9.0392E-05 115.82 By MS/MS 3 0 1 1 8377000 0 0 8377000 12052 2094 12683 52147 43428 43428 1 0 0 1624700 SILVSPTGPSR GLNRNMTAEFKKTDKSILVSPTGPSRVAFD KTDKSILVSPTGPSRVAFDPEQKPLHGVLK K S I S R V 0 1 0 0 0 0 0 1 0 1 1 0 0 0 2 3 1 0 0 1 0 0 11 0 1112.619 Q14684 Q14684 702 712 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.0038633 104.2 By MS/MS 4.5 2.5 1 1 2 16893000 0 16893000 0 12053 1313 12684 52148;52149 43429;43430 43430 2 0 8039700 0 SIMELMNVLELR EKLIKRQEELDRGYKSIMELMNVLELRKYE GYKSIMELMNVLELRKYEAIQLTFKQVSKN K S I L R K 0 1 1 0 0 0 2 0 0 1 3 0 2 0 0 1 0 0 0 1 0 0 12 0 1446.7575 Q9UQE7 Q9UQE7 1013 1024 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.0744E-34 207.83 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 122630000 0 1107200 121520000 12054 2222 12685 52150;52151;52152;52153 43431;43432;43433 43432 3 0 498590 27125000 SIMSYNGGAVMAMK ______________________________ MSIMSYNGGAVMAMKGKNCVAIAADRRFGI M S I M K G 2 0 1 0 0 0 0 2 0 1 0 1 3 0 0 2 0 0 1 1 0 0 14 0 1458.6669 P49720 P49720 2 15 PSMB3 Proteasome subunit beta type-3 yes yes 2 0.038711 58.37 By MS/MS By matching 7 0 2 1 1 1901900 0 646740 1255200 12055 862 12686 52154;52155 43434 43434 1 0 371360 222720 SIMTIVGHTDVVK GSYDKTSRIWSLEGKSIMTIVGHTDVVKDV GKSIMTIVGHTDVVKDVAWVKKDSLSCLLL K S I V K D 0 0 0 1 0 0 0 1 1 2 0 1 1 0 0 1 2 0 0 3 0 0 13 0 1398.7541 Q9GZL7 Q9GZL7 132 144 WDR12 Ribosome biogenesis protein WDR12 yes yes 3 0.028086 53.869 By MS/MS By matching 5.5 0.5 1 1 1 1 13362000 0 11693000 1668900 12056 1949 12687 52156;52157 43435 43435 1 0 3014100 249690 SINDNIAIFTEVQK SLENTVEERLTELTKSINDNIAIFTEVQKR KSINDNIAIFTEVQKRSQKEINDMKAKVAS K S I Q K R 1 0 2 1 0 1 1 0 0 3 0 1 0 1 0 1 1 0 0 1 0 0 14 0 1590.8253 Q07065 Q07065 247 260 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00043117 122.33 By MS/MS 3 0 1 1 4366500 0 4366500 0 12057 1176 12688 52158 43436 43436 1 0 1861400 0 SINPDEAVAYGAAVQAAILMGDK QKLLQDFFNGRDLNKSINPDEAVAYGAAVQ AYGAAVQAAILMGDKSENVQDLLLLDVAPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 1 0 1 1 0 0 1 2 0 0 23 0 2303.1467 P0DMV9;P0DMV8 P0DMV9 362 384 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2;3 0.00077298 58.284 By MS/MS By matching 3.5 0.5 2 2 3 1 7410400 0 3014500 4395900 12058 501 12689 52159;52160;52161;52162 43437;43438 43437 2 0 1243300 717990 SINPDEAVAYGAAVQAAILSGDK QKLLQDFFNGKELNKSINPDEAVAYGAAVQ AYGAAVQAAILSGDKSENVQDLLLLDVTPL K S I D K S 6 0 1 2 0 1 1 2 0 2 1 1 0 0 1 2 0 0 1 2 0 0 23 0 2259.1383 P11142 P11142 362 384 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 5.1874E-21 154.51 By MS/MS By MS/MS By MS/MS 2.67 0.943 2 6 1 2 3 4 200580000 2455400 18853000 179270000 12059 517 12690 52163;52164;52165;52166;52167;52168;52169;52170;52171 43439;43440;43441;43442;43443;43444;43445;43446;43447;43448 43446 10 2833000 8099200 34662000 SINPDEAVAYGAAVQAAVLMGDK QKLLQDFFNGKELNKSINPDEAVAYGAAVQ AYGAAVQAAVLMGDKCEKVQDLLLLDVAPL K S I D K C 6 0 1 2 0 1 1 2 0 1 1 1 1 0 1 1 0 0 1 3 0 0 23 0 2289.1311 P17066 P17066 364 386 HSPA6 Heat shock 70 kDa protein 6 yes yes 2;3 0.00036495 72.175 By MS/MS By matching By MS/MS 4 1.15 3 1 1 1 4 1 1 45523000 22252000 3060200 20211000 12060 582 12691 52172;52173;52174;52175;52176;52177 43449;43450;43451 43451 3 23748000 1059300 3920000 SINPLGGFVHYGEVTNDFVMLK LIKNNASTDYDLSDKSINPLGGFVHYGEVT FVHYGEVTNDFVMLKGCVVGTKKRVLTLRK K S I L K G 0 0 2 1 0 0 1 3 1 1 2 1 1 2 1 1 1 0 1 3 0 0 22 0 2436.2148 P39023 P39023 313 334 RPL3 60S ribosomal protein L3 yes yes 2;3 1.2067E-13 111.33 By MS/MS By MS/MS 4.18 1.11 1 2 3 4 1 4 7 186290000 0 97387000 88907000 12061 778 12692;12693 52178;52179;52180;52181;52182;52183;52184;52185;52186;52187;52188 43452;43453;43454;43455;43456;43457;43458;43459;43460 43457 389 9 0 25856000 13954000 SINQPVAFVR ______________________________ AALRRSINQPVAFVRRIPWTAASSQLKEHF R S I V R R 1 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 2 0 0 10 0 1129.6244 Q9GZT3 Q9GZT3 15 24 SLIRP SRA stem-loop-interacting RNA-binding protein, mitochondrial yes yes 2 0.00037808 118.74 By matching By MS/MS 8.5 1.12 1 1 1 1 1 3 22712000 1024100 21688000 0 12062 1955 12694 52189;52190;52191;52192 43461;43462 43461 2 2207300 37406000 0 SINQQSGAHVELQR DKCGLVIGKGGENIKSINQQSGAHVELQRN KSINQQSGAHVELQRNPPPNSDPNLRRFTI K S I Q R N 1 1 1 0 0 3 1 1 1 1 1 0 0 0 0 2 0 0 0 1 0 0 14 0 1565.791 Q96I24 Q96I24 379 392 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 1.5318E-25 205.46 By MS/MS By MS/MS 3.58 1.32 1 1 4 3 2 1 5 7 201440000 0 143920000 57519000 12063 1797 12695 52193;52194;52195;52196;52197;52198;52199;52200;52201;52202;52203;52204 43463;43464;43465;43466;43467;43468;43469;43470;43471;43472;43473 43465 11 0 48105000 11589000 SIPASDLPQVR LQTIFNRWRASQLIKSIPASDLPQVRAKVA QLIKSIPASDLPQVRAKVAAVEMLKGQRAD K S I V R A 1 1 0 1 0 1 0 0 0 1 1 0 0 0 2 2 0 0 0 1 0 0 11 0 1181.6404 O94832 O94832 791 801 MYO1D Unconventional myosin-Id yes yes 2 0.053687 72.928 By MS/MS 1.5 0.5 1 1 2 5614700 0 5614700 0 12064 299 12696 52205;52206 43474 43474 1 0 2571800 0 SIPAYLAETLYYAMK GNLEQLLLAVVKSIRSIPAYLAETLYYAMK SIPAYLAETLYYAMKGAGTDDHTLIRVMVS R S I M K G 3 0 0 0 0 0 1 0 0 1 2 1 1 0 1 1 1 0 3 0 0 0 15 0 1732.8746 P08758 P08758 246 260 ANXA5 Annexin A5 yes yes 2;3 0.0018764 91.937 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 3214700 0 1217300 1997400 12065 479 12697 52207;52208;52209;52210;52211 43475;43476;43477 43475 3 0 405900 298830 SIPSLVDGFKPGQR INKELILFSNSDNERSIPSLVDGFKPGQRK RSIPSLVDGFKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 0 1 2 2 0 0 0 1 0 0 14 1 1499.8096 Q02880 Q02880 735 748 TOP2B DNA topoisomerase 2-beta yes yes 2;3 0.00084087 115.7 By matching By MS/MS By MS/MS 1.33 0.471 4 2 1 1 4 48721000 1377400 5617100 41727000 12066 1150 12698 52212;52213;52214;52215;52216;52217 43478;43479;43480;43481;43482 43480 5 1377400 2745600 9092700 SIPSMVDGLKPGQR INKELILFSNSDNERSIPSMVDGLKPGQRK RSIPSMVDGLKPGQRKVLFTCFKRNDKREV R S I Q R K 0 1 0 1 0 1 0 2 0 1 1 1 1 0 2 2 0 0 0 1 0 0 14 1 1483.7817 P11388 P11388 714 727 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 1.4288E-10 180.09 By MS/MS By MS/MS 1.5 0.5 4 4 3 5 165080000 0 17614000 147470000 12067 524 12699;12700 52218;52219;52220;52221;52222;52223;52224;52225 43483;43484;43485;43486;43487;43488;43489;43490;43491;43492 43487 228 10 0 8165600 32103000 SIPTLISR AEYGRLGLGEGAEEKSIPTLISRLPAVSSV GEGAEEKSIPTLISRLPAVSSVACGASVGY K S I S R L 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 1 0 0 0 0 0 8 0 885.52837 P18754 P18754 336 343 RCC1 Regulator of chromosome condensation yes yes 2 0.016005 87.435 By MS/MS 5 0 1 1 32636000 0 32636000 0 12068 599 12701 52226 43493 43493 1 0 8412500 0 SIQADGLVWGSSK WDDETDMAKLEECVRSIQADGLVWGSSKLV VRSIQADGLVWGSSKLVPVGYGIKKLQIQC R S I S K L 1 0 0 1 0 1 0 2 0 1 1 1 0 0 0 3 0 1 0 1 0 0 13 0 1346.683 P24534 P24534 164 176 EEF1B2 Elongation factor 1-beta yes yes 2 0.00037894 126.03 By MS/MS By MS/MS By MS/MS 6.43 0.728 1 2 4 2 2 3 80661000 10193000 17018000 53450000 12069 649 12702 52227;52228;52229;52230;52231;52232;52233 43494;43495;43496;43497;43498 43497 5 13801000 7477900 8472900 SIQEELQQLR VRREEAAVDAQQQKRSIQEELQQLRQSSEA QQQKRSIQEELQQLRQSSEAEIQAKARQAE R S I L R Q 0 1 0 0 0 3 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1242.6568 Q15149 Q15149 1554 1563 PLEC Plectin yes yes 2 1.5575E-29 198.65 By MS/MS By MS/MS 1 0 2 1 1 42966000 0 28340000 14626000 12070 1348 12703 52234;52235 43499;43500 43499 2 0 13852000 3151400 SIQEIQELDKDDESLRK EEDEHSVNYKPPAQKSIQEIQELDKDDESL QEIQELDKDDESLRKYKEALLGRVAVSADP K S I R K Y 0 1 0 3 0 2 3 0 0 2 2 2 0 0 0 2 0 0 0 0 0 0 17 2 2045.0277 P52565 P52565 34 50 ARHGDIA Rho GDP-dissociation inhibitor 1 yes yes 2 6.6443E-07 164.68 By MS/MS 7 0 1 1 4245300 0 0 4245300 12071 909 12704 52236 43501 43501 1 0 0 753300 SIQFVDWCPTGFK PKDVNAAIATIKTKRSIQFVDWCPTGFKVG KRSIQFVDWCPTGFKVGINYQPPTVVPGGD R S I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 1 1 1 0 1 0 0 13 0 1583.7442 P68363;P68366 P68363 340 352 TUBA1B;TUBA4A Tubulin alpha-1B chain;Tubulin alpha-4A chain no no 2 1.1028E-11 182.28 By MS/MS By MS/MS By MS/MS 5.5 2.1 1 1 3 1 2 1 2 1 3 2 7 420800000 15815000 90140000 314850000 12072 1077;1078 12705 52237;52238;52239;52240;52241;52242;52243;52244;52245;52246;52247;52248 43502;43503;43504;43505;43506;43507;43508;43509 43504 8 13470000 26407000 54276000 SIQLDGLVWGASK WDDETDMAQLEACVRSIQLDGLVWGASKLV VRSIQLDGLVWGASKLVPVGYGIRKLQIQC R S I S K L 1 0 0 1 0 1 0 2 0 1 2 1 0 0 0 2 0 1 0 1 0 0 13 0 1372.7351 P29692 P29692 220 232 EEF1D Elongation factor 1-delta yes yes 2 0.00031277 138.25 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 46382000 0 11465000 34917000 12073 702 12706 52249;52250;52251 43510;43511 43511 2 0 3968700 5279400 SIQQVLQTQDPPATMELAVAVLR SPTELFQQHCVSWLRSIQQVLQTQDPPATM QDPPATMELAVAVLRDLLRYAAQLPALFRD R S I L R D 3 1 0 1 0 4 1 0 0 1 3 0 1 0 2 1 2 0 0 3 0 0 23 0 2507.3418 Q8IZL8 Q8IZL8 134 156 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 5.2923E-10 96.708 By MS/MS 2 0.816 1 1 1 3 5523400 0 0 5523400 12074 1596 12707 52252;52253;52254 43512 43512 1 0 0 1218200 SIRPDNMSEYSK EMTKYHSDDYIKFLRSIRPDNMSEYSKQMQ FLRSIRPDNMSEYSKQMQRFNVGEDCPVFD R S I S K Q 0 1 1 1 0 0 1 0 0 1 0 1 1 0 1 3 0 0 1 0 0 0 12 1 1425.6558 Q13547;Q92769 Q13547 78 89 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 2;3 0.00046867 144.1 By MS/MS By MS/MS 4.38 0.857 1 4 2 1 4 4 69488000 0 22853000 46635000 12075 1257;1721 12708 52255;52256;52257;52258;52259;52260;52261;52262 43513;43514;43515;43516 43514 4 0 7879400 7529500 SIRPLLEGR IKEMGFTNMTEIQHKSIRPLLEGRDLLAAA TEIQHKSIRPLLEGRDLLAAAKTGSGKTLA K S I G R D 0 2 0 0 0 0 1 1 0 1 2 0 0 0 1 1 0 0 0 0 0 0 9 1 1039.6138 Q9NVP1 Q9NVP1 209 217 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 0.040311 96.665 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 48255000 0 20109000 28146000 12076 2069 12709 52263;52264;52265 43517;43518 43518 2 0 8620000 5459000 SISINLMGR RGFGSRSLYNLGGSRSISINLMGRSTSGFC NLGGSRSISINLMGRSTSGFCQGGGVGGFG R S I G R S 0 1 1 0 0 0 0 1 0 2 1 0 1 0 0 2 0 0 0 0 0 0 9 0 989.5328 CON__Q7Z794;Q7Z794 CON__Q7Z794 69 77 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.037524 75.109 By MS/MS 10 0 1 1 2807600 2807600 0 0 + 12077 95 12710 52266 43519 43519 1 5114900 0 0 SISISVAAGSSR GSFGSRSLYNLGSNKSISISVAAGSSRAGG SNKSISISVAAGSSRAGGFGGGRSSCGFAG K S I S R A 2 1 0 0 0 0 0 1 0 2 0 0 0 0 0 5 0 0 0 1 0 0 12 0 1133.6041 CON__Q01546;Q01546 Q01546 66 77 KRT76 Keratin, type II cytoskeletal 2 oral no no 2 0.012938 89.679 By MS/MS By matching By matching 6.4 4.03 1 1 1 2 2 2 1 14688000 7117500 3142900 4427400 + 12078 71;1135 12711 52267;52268;52269;52270;52271 43520;43521 43520 2 6252800 6582000 9683300 SISISVAGGGGGFGAAGGFGGR GGFGSRSLVGLGGTKSISISVAGGGGGFGA GGGGGFGAAGGFGGRGGGFGGGSGFGGGSG K S I G R G 3 1 0 0 0 0 0 10 0 2 0 0 0 2 0 3 0 0 0 1 0 0 22 0 1837.9071 CON__P35908;CON__P35908v2;P35908 CON__P35908 71 92 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 7.2742E-93 243.7 By MS/MS By MS/MS By MS/MS 5.32 2.94 4 1 2 2 3 2 5 2 1 11 2 9 294420000 159660000 7738300 127020000 + 12079 65;66 12712 52272;52273;52274;52275;52276;52277;52278;52279;52280;52281;52282;52283;52284;52285;52286;52287;52288;52289;52290;52291;52292;52293 43522;43523;43524;43525;43526;43527;43528;43529;43530;43531;43532;43533;43534;43535;43536;43537;43538;43539;43540;43541;43542;43543;43544;43545;43546 43540 25 128070000 3688200 24135000 SISISVAR GGFGSRSLVNLGGSKSISISVARGGGRGSG VNLGGSKSISISVARGGGRGSGFGGGYGGG K S I A R G 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 0 1 0 0 8 0 831.48142 P04264;CON__P04264 P04264 75 82 KRT1 Keratin, type II cytoskeletal 1 yes no 2 4.9673E-06 157.99 By MS/MS By MS/MS By MS/MS 5.8 2.91 4 3 4 4 3 5 4 4 5 5 19 9 13 12380000000 9622900000 637940000 2119700000 + 12080 413 12713 52294;52295;52296;52297;52298;52299;52300;52301;52302;52303;52304;52305;52306;52307;52308;52309;52310;52311;52312;52313;52314;52315;52316;52317;52318;52319;52320;52321;52322;52323;52324;52325;52326;52327;52328;52329;52330;52331;52332;52333;52334 43547;43548;43549;43550;43551;43552;43553;43554;43555;43556;43557;43558;43559;43560;43561;43562;43563;43564;43565;43566;43567;43568;43569;43570;43571;43572;43573;43574;43575;43576;43577;43578;43579;43580;43581;43582;43583;43584;43585;43586;43587;43588;43589;43590;43591;43592;43593;43594;43595;43596;43597;43598;43599;43600;43601;43602;43603;43604;43605;43606;43607 43598 61 10584000000 521010000 683490000 SISLYYTGEK EKTFEEKQGTEIDGRSISLYYTGEKGQNQD EIDGRSISLYYTGEKGQNQDYRGGKNSTWS R S I E K G 0 0 0 0 0 0 1 1 0 1 1 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 P19338 P19338 458 467 NCL Nucleolin yes yes 2 4.9194E-05 149.94 By matching By MS/MS By MS/MS 4.15 2.25 1 3 2 2 1 2 1 1 1 6 6 837730000 13500000 325050000 499170000 12081 604 12714 52335;52336;52337;52338;52339;52340;52341;52342;52343;52344;52345;52346;52347 43608;43609;43610;43611;43612;43613;43614;43615;43616;43617;43618 43610 11 16266000 132340000 101490000 SISMSVAGSR GGFGSRSLYNLRGNKSISMSVAGSRQGACF LRGNKSISMSVAGSRQGACFGGAGGFGTGG K S I S R Q 1 1 0 0 0 0 0 1 0 1 0 0 1 0 0 4 0 0 0 1 0 0 10 0 993.49133 CON__P19013;P19013 CON__P19013 134 143 KRT4 Keratin, type II cytoskeletal 4 yes no 2 0.0012709 109.71 By MS/MS 1 0 1 1 47788000 47788000 0 0 + 12082 61 12715 52348 43619 43619 1 47788000 0 0 SISSDEVNFLVYR ______________________________ ______________________________ M S I Y R Y 0 1 1 1 0 0 1 0 0 1 1 0 0 1 0 3 0 0 1 2 0 0 13 0 1527.7569 Q9BZK7 Q9BZK7 2 14 TBL1XR1 F-box-like/WD repeat-containing protein TBL1XR1 yes yes 2 0.0088902 70.1 By MS/MS 4.5 0.5 1 1 2 3740000 0 0 3740000 12083 1945 12716 52349;52350 43620 43620 0 0 0 600230 SITILSTPEGTSAACK KIDVHRKENAGAAEKSITILSTPEGTSAAC ITILSTPEGTSAACKSILEIMHKEAQDIKF K S I C K S 2 0 0 0 1 0 1 1 0 2 1 1 0 0 1 3 3 0 0 0 0 0 16 0 1634.8185 O00425 O00425 243 258 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2 3.4347E-05 127.17 By MS/MS 3 0 1 1 9729700 0 0 9729700 12084 121 12717 52351 43621 43621 1 0 0 1887100 SITVLVEGENTR MQEHSDQVPVGNIPRSITVLVEGENTRIAQ IPRSITVLVEGENTRIAQPGDHVSVTGIFL R S I T R I 0 1 1 0 0 0 2 1 0 1 1 0 0 0 0 1 2 0 0 2 0 0 12 0 1316.6936 P33993 P33993 252 263 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.00018302 133.23 By MS/MS 3 0 1 1 4464900 0 4464900 0 12085 733 12718 52352 43622 43622 1 0 1903400 0 SIVDYKPNLDLLEQQHQLIQEALIFDNK GTLEDQLSHLKQYERSIVDYKPNLDLLEQQ QQHQLIQEALIFDNKHTNYTMEHIRVGWEQ R S I N K H 1 0 2 3 0 4 2 0 1 3 5 2 0 1 1 1 0 0 1 1 0 0 28 1 3323.7402 O43707 O43707 696 723 ACTN4 Alpha-actinin-4 yes yes 3;4 3.0537E-21 107.75 By matching By MS/MS 2 0.577 1 4 1 1 5 55224000 0 822050 54402000 12086 210 12719 52353;52354;52355;52356;52357;52358 43623;43624;43625;43626;43627 43626 5 0 370180 12105000 SIVGEIVR LVAAVSLWATDYGMKSIVGEIVREIGQKCP ATDYGMKSIVGEIVREIGQKCPQELSRDPS K S I V R E 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 0 2 0 0 8 0 871.51272 Q15021 Q15021 273 280 NCAPD2 Condensin complex subunit 1 yes yes 2 0.0044238 101.69 By MS/MS 1.5 0.5 1 1 2 8002900 0 0 8002900 12087 1332 12720 52359;52360 43628 43628 1 0 0 1777200 SIVIRPLEPQPAPHLAR VFHHWQIVPGDPLDKSIVIRPLEPQPAPHL VIRPLEPQPAPHLAREFMIKTRRRKGLSED K S I A R E 2 2 0 0 0 1 1 0 1 2 2 0 0 0 4 1 0 0 0 1 0 0 17 1 1893.0949 Q15029 Q15029 915 931 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3;4 5.5543E-08 162.81 By MS/MS By MS/MS 1.86 0.639 2 4 1 1 6 149060000 0 25776000 123290000 12088 1335 12721 52361;52362;52363;52364;52365;52366;52367 43629;43630;43631;43632 43631 4 0 11607000 27551000 SIWAFGPDATGPNILVDDTLPSEVDK EFFQTKYDWDLLAARSIWAFGPDATGPNIL PNILVDDTLPSEVDKALLGSVKDSIVQGFQ R S I D K A 2 0 1 4 0 0 1 2 0 2 2 1 0 1 3 2 2 1 0 2 0 0 26 0 2756.3545 Q15029 Q15029 731 756 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 5.1553E-62 212.72 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 10793000 0 3797300 6995600 12089 1335 12722 52368;52369;52370 43633;43634 43634 2 0 1710000 1494700 SIYDDISSPGLGSTPLTSR VVPAHKDKSGAPPVRSIYDDISSPGLGSTP DISSPGLGSTPLTSRRQPNISVMQSPLVGV R S I S R R 0 1 0 2 0 0 0 2 0 2 2 0 0 0 2 5 2 0 1 0 0 0 19 0 1964.9691 Q8NFH5 Q8NFH5 93 111 NUP35 Nucleoporin NUP53 yes yes 2 8.489E-23 185.95 By MS/MS 5.5 0.5 1 1 2 22133000 0 0 22133000 12090 1643 12723 52371;52372 43635;43636 43636 2 0 0 3249600 SIYNLNEDEELTHYGQSLADIEK MKRFALEQQRHHEKKSIYNLNEDEELTHYG EELTHYGQSLADIEKHNDIVDSDSDAEDRG K S I E K H 1 0 2 2 0 1 4 1 1 2 3 1 0 0 0 2 1 0 2 0 0 0 23 0 2680.2504 P78316 P78316 117 139 NOP14 Nucleolar protein 14 yes yes 3 1.0146E-09 93.583 By MS/MS 2 0 1 1 9663600 0 0 9663600 12091 1083 12724 52373 43637 43637 1 0 0 2183800 SIYSQIQEQR YPHIKRIARHRHLPKSIYSQIQEQRIMKEA RHLPKSIYSQIQEQRIMKEARRRKEVNRIK K S I Q R I 0 1 0 0 0 3 1 0 0 2 0 0 0 0 0 2 0 0 1 0 0 0 10 0 1250.6255 Q9NV06 Q9NV06 399 408 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 2 8.3173E-11 166.3 By matching By MS/MS By MS/MS 4.75 0.829 2 1 1 1 1 2 38648000 4077300 13678000 20893000 12092 2062 12725 52374;52375;52376;52377 43638;43639 43639 2 3181000 3525600 3360500 SIYYITGESK TSLSEYVSRMKETQKSIYYITGESKEQVAN KETQKSIYYITGESKEQVANSAFVERVRKR K S I S K E 0 0 0 0 0 0 1 1 0 2 0 1 0 0 0 2 1 0 2 0 0 0 10 0 1159.5761 P08238;Q58FF8 P08238 482 491 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 0.0066725 94.309 By MS/MS By MS/MS By MS/MS 7 3.29 2 1 2 1 2 2 50790000 11918000 4457000 34415000 12093 469;1431 12726 52378;52379;52380;52381;52382 43640;43641;43642;43643;43644 43640 5 13750000 22549000 33053000 SKAEAEALYQTK IIAEVRAQYEEIAQRSKAEAEALYQTKVQQ AQRSKAEAEALYQTKVQQLQISVDQHGDNL R S K T K V 3 0 0 0 0 1 2 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 12 1 1337.6827 CON__P12035;P12035;CON__Q32MB2;Q86Y46;CON__Q7RTS7;Q7RTS7;CON__Q3SY84;Q3SY84;CON__P19013;P19013 CON__P19013 396 407 KRT3;KRT73;KRT74;KRT71;KRT4 Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 4 no no 2;3 3.3634E-57 228.74 By MS/MS By matching 1 0 4 2 2 100820000 97972000 2845900 0 + 12094 61;54;80 12727 52383;52384;52385;52386 43645;43646 43645 2 97972000 1391000 0 SKAEAESLYQSK IIAEVKAQYEDIAQKSKAEAESLYQSKYEE AQKSKAEAESLYQSKYEELQITAGRHGDSV K S K S K Y 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 3 0 0 1 0 0 0 12 1 1339.662 P04264;CON__P04264 P04264 365 376 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 5.8336E-195 311.49 By MS/MS By MS/MS By MS/MS 5.34 2.89 7 6 6 5 6 5 6 7 5 5 22 16 20 9580900000 7174900000 321620000 2084400000 + 12095 413 12728 52387;52388;52389;52390;52391;52392;52393;52394;52395;52396;52397;52398;52399;52400;52401;52402;52403;52404;52405;52406;52407;52408;52409;52410;52411;52412;52413;52414;52415;52416;52417;52418;52419;52420;52421;52422;52423;52424;52425;52426;52427;52428;52429;52430;52431;52432;52433;52434;52435;52436;52437;52438;52439;52440;52441;52442;52443;52444 43647;43648;43649;43650;43651;43652;43653;43654;43655;43656;43657;43658;43659;43660;43661;43662;43663;43664;43665;43666;43667;43668;43669;43670;43671;43672;43673;43674;43675;43676;43677;43678;43679;43680;43681;43682;43683;43684;43685;43686;43687;43688;43689;43690;43691;43692;43693;43694;43695;43696;43697;43698;43699;43700;43701;43702;43703;43704;43705;43706;43707;43708;43709;43710;43711;43712;43713;43714;43715;43716;43717;43718;43719;43720;43721;43722;43723;43724;43725;43726;43727;43728 43692 82 7004300000 187450000 828490000 SKAEAESLYQSKYEELQITAGR IIAEVKAQYEDIAQKSKAEAESLYQSKYEE LYQSKYEELQITAGRHGDSVRNSKIEISEL K S K G R H 3 1 0 0 0 2 4 1 0 1 2 2 0 0 0 3 1 0 2 0 0 0 22 2 2500.2445 P04264;CON__P04264 P04264 365 386 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 3.1354E-149 276.73 By MS/MS By MS/MS 5.44 3.1 2 3 1 2 2 1 1 2 2 14 2 331250000 322410000 8840400 0 + 12096 413 12729 52445;52446;52447;52448;52449;52450;52451;52452;52453;52454;52455;52456;52457;52458;52459;52460 43729;43730;43731;43732;43733;43734;43735;43736;43737;43738;43739;43740;43741;43742 43730 14 257620000 3980900 0 SKAELMEISEDKTK RLTTDFNVIVEALSKSKAELMEISEDKTKI KSKAELMEISEDKTKIRRSPSKPLPEVTDE K S K T K I 1 0 0 1 0 0 3 0 0 1 1 3 1 0 0 2 1 0 0 0 0 0 14 2 1607.8076 P05455 P05455 75 88 SSB Lupus La protein yes yes 3 0.00098904 95.822 By MS/MS 4.5 0.5 1 1 2 23601000 0 0 23601000 12097 434 12730 52461;52462 43743 43743 1 0 0 3415700 SKDEAEALYQTK IIDAVRTQYELIAQRSKDEAEALYQTKYQE AQRSKDEAEALYQTKYQELQITAGRHGDDL R S K T K Y 2 0 0 1 0 1 2 0 0 0 1 2 0 0 0 1 1 0 1 0 0 0 12 1 1381.6725 CON__Q7Z794;Q7Z794 CON__Q7Z794 349 360 KRT77 Keratin, type II cytoskeletal 1b no no 3 0.010458 74.29 By MS/MS By matching 1.5 0.5 1 1 1 1 20581000 19676000 0 905360 + 12098 95 12731 52463;52464 43744 43744 1 19676000 0 204590 SKDFVQVMR LCRVEGMTELYFQLKSKDFVQVMRHRDDER LYFQLKSKDFVQVMRHRDDERQKVCLDIIY K S K M R H 0 1 0 1 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 0 0 9 1 1108.5699 P78527 P78527 2417 2425 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.067766 90.308 By MS/MS 1 0 1 1 14063000 0 0 14063000 12099 1089 12732 52465 43745 43745 1 0 0 3030200 SKEEAEALYHSK IIAEVKAQYEEIAQRSKEEAEALYHSKYEE AQRSKEEAEALYHSKYEELQVTVGRHGDSL R S K S K Y 2 0 0 0 0 0 3 0 1 0 1 2 0 0 0 2 0 0 1 0 0 0 12 1 1390.6729 CON__P35908;CON__P35908v2;P35908 CON__P35908 369 380 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 2.2191E-125 272.65 By MS/MS By MS/MS By MS/MS 5.6 3.05 7 6 7 4 5 5 5 6 8 7 29 10 21 3363500000 1487300000 127810000 1748300000 + 12100 65;66 12733 52466;52467;52468;52469;52470;52471;52472;52473;52474;52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485;52486;52487;52488;52489;52490;52491;52492;52493;52494;52495;52496;52497;52498;52499;52500;52501;52502;52503;52504;52505;52506;52507;52508;52509;52510;52511;52512;52513;52514;52515;52516;52517;52518;52519;52520;52521;52522;52523;52524;52525 43746;43747;43748;43749;43750;43751;43752;43753;43754;43755;43756;43757;43758;43759;43760;43761;43762;43763;43764;43765;43766;43767;43768;43769;43770;43771;43772;43773;43774;43775;43776;43777;43778;43779;43780;43781;43782;43783;43784;43785;43786;43787;43788;43789;43790;43791;43792;43793;43794;43795;43796;43797;43798;43799;43800;43801;43802;43803;43804;43805;43806;43807;43808;43809;43810;43811;43812;43813;43814;43815;43816;43817;43818;43819;43820;43821;43822;43823;43824;43825;43826;43827;43828;43829;43830;43831;43832;43833;43834;43835;43836;43837;43838;43839;43840;43841;43842;43843;43844;43845;43846 43796 100 1408500000 78444000 774260000 SKEEAEALYHSKYEELQVTVGR IIAEVKAQYEEIAQRSKEEAEALYHSKYEE LYHSKYEELQVTVGRHGDSLKEIKIEISEL R S K G R H 2 1 0 0 0 1 5 1 1 0 2 2 0 0 0 2 1 0 2 2 0 0 22 2 2565.2711 CON__P35908;CON__P35908v2;P35908 CON__P35908 369 390 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 1.0796E-128 261.97 By MS/MS By matching 6.11 2.92 1 1 1 1 1 1 2 1 8 1 280180000 277940000 2238200 0 + 12101 65;66 12734 52526;52527;52528;52529;52530;52531;52532;52533;52534 43847;43848;43849;43850;43851 43850 5 193830000 774790 0 SKEFQLFSSPHGK WELLNQAQEHFGKDKSKEFQLFSSPHGKDL DKSKEFQLFSSPHGKDLLFKDSAHGFLKVP K S K G K D 0 0 0 0 0 1 1 1 1 0 1 2 0 2 1 3 0 0 0 0 0 0 13 1 1490.7518 P02787 P02787 298 310 TF Serotransferrin yes yes 3 0.0017267 93.348 By MS/MS 9.5 0.5 1 1 2 18532000 18532000 0 0 12102 399 12735 52535;52536 43852;43853;43854 43853 3 15811000 0 0 SKELTTEIDNNIEQISSYK AEQNRKDAEAWFNEKSKELTTEIDNNIEQI TTEIDNNIEQISSYKSEITELRRNVQALEI K S K Y K S 0 0 2 1 0 1 3 0 0 3 1 2 0 0 0 3 2 0 1 0 0 0 19 1 2211.0907 P13645;CON__P13645 P13645 344 362 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 0 433.57 By MS/MS By MS/MS By MS/MS 4.62 2.78 6 5 3 3 3 4 4 2 3 1 18 3 13 927600000 451580000 20808000 455210000 + 12103 56 12736 52537;52538;52539;52540;52541;52542;52543;52544;52545;52546;52547;52548;52549;52550;52551;52552;52553;52554;52555;52556;52557;52558;52559;52560;52561;52562;52563;52564;52565;52566;52567;52568;52569;52570 43855;43856;43857;43858;43859;43860;43861;43862;43863;43864;43865;43866;43867;43868;43869;43870;43871;43872;43873;43874;43875;43876;43877;43878;43879;43880;43881;43882;43883;43884;43885 43856 31 393230000 9989200 88595000 SKEQAELEAAR LELGRIRSNAEDTLRSKEQAELEAARQRQL DTLRSKEQAELEAARQRQLAAEEERRRREA R S K A R Q 3 1 0 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 11 1 1230.6204 Q15149 Q15149 2098 2108 PLEC Plectin yes yes 2;3 0.00012491 119.03 By MS/MS By MS/MS 1 0 3 2 1 13746000 0 10124000 3621900 12104 1348 12737 52571;52572;52573 43886;43887;43888 43887 3 0 4948700 780390 SKEQEVNELLQK SQVKREKENIQTLLKSKEQEVNELLQKFQQ LLKSKEQEVNELLQKFQQAQEELAEMKRYA K S K Q K F 0 0 1 0 0 2 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 12 1 1443.7569 Q9P0K7 Q9P0K7 844 855 RAI14 Ankycorbin yes yes 2;3 5.0406E-11 176.42 By MS/MS By MS/MS 2 0 3 1 2 22281000 0 4303000 17978000 12105 2115 12738 52574;52575;52576 43889;43890;43891 43890 3 0 1937700 4062700 SKEQLTPLIK KSPELQAEAKSYFEKSKEQLTPLIKKAGTE SYFEKSKEQLTPLIKKAGTELVNFLSYFVE K S K I K K 0 0 0 0 0 1 1 0 0 1 2 2 0 0 1 1 1 0 0 0 0 0 10 1 1155.6863 P02652 P02652 68 77 APOA2 Apolipoprotein A-II;Proapolipoprotein A-II;Truncated apolipoprotein A-II yes yes 2 1.9021E-22 195.36 By MS/MS 9.5 0.5 1 1 2 89177000 89177000 0 0 12106 390 12739 52577;52578 43892;43893 43892 2 62878000 0 0 SKFEDMAK KKCSERWKTMSAKEKSKFEDMAKSDKARYD TMSAKEKSKFEDMAKSDKARYDREMKNYVP K S K A K S 1 0 0 1 0 0 1 0 0 0 0 2 1 1 0 1 0 0 0 0 0 0 8 1 954.44807 P26583 P26583 58 65 HMGB2 High mobility group protein B2 yes yes 2 1.8894E-05 161.02 By matching By MS/MS 6.67 0.471 1 2 1 2 151860000 0 15308000 136550000 12107 670 12740 52579;52580;52581 43894;43895 43895 2 0 8789800 23133000 SKGESDDFHMDFDSAVAPR SNFEKIVSKAVTSKKSKGESDDFHMDFDSA SDDFHMDFDSAVAPRAKSVRAKKPIKYLEE K S K P R A 2 1 0 4 0 0 1 1 1 0 0 1 1 2 1 3 0 0 0 1 0 0 19 1 2109.9062 P11388 P11388 1491 1509 TOP2A DNA topoisomerase 2-alpha yes yes 3;4 2.0552E-06 104.45 By MS/MS 1.33 0.471 2 1 3 44119000 0 0 44119000 12108 524 12741 52582;52583;52584 43896;43897 43896 2 0 0 9535600 SKGLAPDLPEDLYHLIK QVRFVTGNKILRILKSKGLAPDLPEDLYHL GLAPDLPEDLYHLIKKAVAVRKHLERNRKD K S K I K K 1 0 0 2 0 0 1 1 1 1 4 2 0 0 2 1 0 0 1 0 0 0 17 1 1908.0357 P62277 P62277 77 93 RPS13 40S ribosomal protein S13 yes yes 3 0.0094255 55.189 By MS/MS 7.5 0.5 1 1 2 17937000 0 0 17937000 12109 1016 12742 52585;52586 43898 43898 1 0 0 2810300 SKGPSAAGEQEPDKESGASVDEVAR TAEEAAKKKRRKKKKSKGPSAAGEQEPDKE EPDKESGASVDEVARQLERSALEDKERDED K S K A R Q 4 1 0 2 0 1 4 3 0 0 0 2 0 0 2 4 0 0 0 2 0 0 25 2 2500.1678 P50579 P50579 45 69 METAP2 Methionine aminopeptidase 2 yes yes 4 2.826E-05 67.496 By MS/MS 3.5 0.5 1 1 2 14435000 0 0 14435000 12110 881 12743 52587;52588 43899 43899 1 0 0 2518800 SKLESELANFGPR EQTKTRHLALNLQEKSKLESELANFGPRIN EKSKLESELANFGPRINDIKRIIQSREREM K S K P R I 1 1 1 0 0 0 2 1 0 0 2 1 0 1 1 2 0 0 0 0 0 0 13 1 1446.7467 Q14683 Q14683 735 747 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 1.9261E-05 154.28 By matching By MS/MS By MS/MS 1.38 0.484 5 3 1 3 4 144890000 2428700 15779000 126680000 12111 1312 12744 52589;52590;52591;52592;52593;52594;52595;52596 43900;43901;43902;43903;43904;43905 43903 5 2428700 7285300 27951000 SKLILFPR TESLQANVQRLKEYRSKLILFPRKPSAPKK QRLKEYRSKLILFPRKPSAPKKGDSSAEEL R S K P R K 0 1 0 0 0 0 0 0 0 1 2 1 0 1 1 1 0 0 0 0 0 0 8 1 972.61204 P26373 P26373 122 129 RPL13 60S ribosomal protein L13 yes yes 2 0.044029 98.997 By MS/MS 7 0.816 1 1 1 3 21686000 0 21686000 0 12112 669 12745 52597;52598;52599 43906 43906 1 0 10134000 0 SKLPKPVQDLIK DEEAVKKLTVNPGTKSKLPKPVQDLIKMIF GTKSKLPKPVQDLIKMIFDVESMKKAMVEY K S K I K M 0 0 0 1 0 1 0 0 0 1 2 3 0 0 2 1 0 0 0 1 0 0 12 2 1364.8391 P09874 P09874 663 674 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 3 0.00038948 115.34 By MS/MS By MS/MS 3.25 1.56 1 2 2 1 1 1 2 6 248580000 0 62962000 185620000 12113 492 12746 52600;52601;52602;52603;52604;52605;52606;52607 43907;43908;43909;43910;43911;43912;43913 43908 7 0 28215000 40582000 SKPDLESSLESLVFDLR DLKKKKAKAGKLKDKSKPDLESSLESLVFD PDLESSLESLVFDLRTKKRISEAKEELKES K S K L R T 0 1 0 2 0 0 2 0 0 0 4 1 0 1 1 4 0 0 0 1 0 0 17 1 1933.9997 Q99549 Q99549 182 198 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 2.7085E-06 138.55 By MS/MS 2 0 1 1 2280700 0 0 2280700 12114 1849 12747 52608 43914 43914 1 0 0 515400 SKPGAAMVEMADGYAVDR VFCLYGNVEKVKFMKSKPGAAMVEMADGYA GAAMVEMADGYAVDRAITHLNNNFMFGQKL K S K D R A 4 1 0 2 0 0 1 2 0 0 0 1 2 0 1 1 0 0 1 2 0 0 18 1 1866.8604 P14866 P14866 417 434 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2;3 2.7229E-16 183.96 By MS/MS By MS/MS 2.92 1.07 2 2 4 5 2 11 288560000 0 6581400 281980000 12115 565 12748;12749 52609;52610;52611;52612;52613;52614;52615;52616;52617;52618;52619;52620;52621 43915;43916;43917;43918;43919;43920;43921;43922;43923;43924 43923 251 10 0 2491000 50291000 SKQLEDELVSLQK RAEQAEADKKAAEDRSKQLEDELVSLQKKL DRSKQLEDELVSLQKKLKGTEDELDKYSEA R S K Q K K 0 0 0 1 0 2 2 0 0 0 3 2 0 0 0 2 0 0 0 1 0 0 13 1 1515.8144 P09493 P09493 36 48 TPM1 Tropomyosin alpha-1 chain yes yes 2;3 3.7331E-07 109.16 By MS/MS By matching 6 0 3 2 1 10161000 0 8560200 1600400 + 12116 485 12750 52622;52623;52624 43925;43926 43926 2 0 2963200 239440 SKSEAEALYQTK IIAEVRAQYEEIAQRSKSEAEALYQTKLGE AQRSKSEAEALYQTKLGELQTTAGRHGDDL R S K T K L 2 0 0 0 0 1 2 0 0 0 1 2 0 0 0 2 1 0 1 0 0 0 12 1 1353.6776 CON__Q01546;Q01546 Q01546 368 379 KRT76 Keratin, type II cytoskeletal 2 oral no no 2 7.4578E-34 212.9 By MS/MS 1 0 1 1 5682000 5682000 0 0 + 12117 71;1135 12751 52625 43927 43927 1 5682000 0 0 SKSEEAHAEDSVMDHHFR EGADGQWKKGFVLHKSKSEEAHAEDSVMDH EEAHAEDSVMDHHFRKPANDITSQLEINFG K S K F R K 2 1 0 2 0 0 3 0 3 0 0 1 1 1 0 3 0 0 0 1 0 0 18 1 2110.9127 Q8NC51 Q8NC51 328 345 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 4;5 0.00020024 89.311 By MS/MS By MS/MS 3.71 1.67 2 2 2 2 4 2 2 12 257740000 0 12096000 245640000 12118 1630 12752 52626;52627;52628;52629;52630;52631;52632;52633;52634;52635;52636;52637;52638;52639 43928;43929;43930;43931;43932;43933 43931 6 0 3118000 40252000 SKSESPKEPEQLR ______________________________ ______________________________ M S K L R K 0 1 0 0 0 1 3 0 0 0 1 2 0 0 2 3 0 0 0 0 0 0 13 2 1513.7736 P09651 P09651 2 14 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 3 0.036454 48.112 By MS/MS 6.5 0.5 1 1 2 3080500 0 3080500 0 12119 490 12753 52640;52641 43934 43934 1 0 1156800 0 SKTPEIYLAYR IERRALPEFFNGKNKSKTPEIYLAYRNFMI GKNKSKTPEIYLAYRNFMIDTYRLNPQEYL K S K Y R N 1 1 0 0 0 0 1 0 0 1 1 1 0 0 1 1 1 0 2 0 0 0 11 1 1339.7136 Q8TAQ2;Q92922 Q8TAQ2 456 466 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2;3 0.0025386 130.31 By MS/MS 2 0 2 2 13273000 0 0 13273000 12120 1653;1731 12754 52642;52643 43935;43936 43936 2 0 0 2999500 SKVDEAVAVLQAHHAK NSELLHMLESPESLRSKVDEAVAVLQAHHA KVDEAVAVLQAHHAKKEAAQKVGAVAAATS R S K A K K 4 0 0 1 0 1 1 0 2 0 1 2 0 0 0 1 0 0 0 3 0 0 16 1 1701.9162 Q13310 Q13310 614 629 PABPC4 Polyadenylate-binding protein 4 yes yes 2;3;4 2.797E-05 102.97 By MS/MS By MS/MS 3 0 4 3 1 139470000 0 117620000 21858000 12121 1237 12755 52644;52645;52646;52647 43937;43938;43939;43940 43937 4 0 50140000 4239300 SKVDEAVAVLQAHQAK NSELLHMLESPESLRSKVDEAVAVLQAHQA KVDEAVAVLQAHQAKEAAQKAVNSATGVPT R S K A K E 4 0 0 1 0 2 1 0 1 0 1 2 0 0 0 1 0 0 0 3 0 0 16 1 1692.9159 P11940;Q9H361 P11940 605 620 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2;3;4 1.113E-05 137.39 By MS/MS By MS/MS 3.45 2.02 1 2 5 1 1 1 8 3 536050000 0 444600000 91448000 12122 530 12756 52648;52649;52650;52651;52652;52653;52654;52655;52656;52657;52658 43941;43942;43943;43944;43945;43946;43947;43948;43949;43950;43951;43952 43945 12 0 191310000 17825000 SKVDQIQEIVTGNPTVIK LLLRLFKTALQEEIKSKVDQIQEIVTGNPT DQIQEIVTGNPTVIKMVVSFNRGARGQNAL K S K I K M 0 0 1 1 0 2 1 1 0 3 0 2 0 0 1 1 2 0 0 3 0 0 18 1 1968.0892 P46940 P46940 1036 1053 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 3 0.0047876 58.29 By MS/MS 3 0.816 1 1 1 3 17758000 0 17758000 0 12123 835 12757 52659;52660;52661 43953 43953 1 0 7582600 0 SKVEDPEINSIQDIK LTLSLRSSRTNPETKSKVEDPEINSIQDIK SKVEDPEINSIQDIKEGQLLRGYVGSIQPH K S K I K E 0 0 1 2 0 1 2 0 0 3 0 2 0 0 1 2 0 0 0 1 0 0 15 1 1713.8785 Q14690 Q14690 1308 1322 PDCD11 Protein RRP5 homolog yes yes 2 2.7458E-24 201.48 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 16328000 0 1870000 14458000 12124 1314 12758 52662;52663;52664 43954;43955 43955 2 0 914040 3144900 SLAAEEEAAR EEERRRREAEERVQKSLAAEEEAARQRKAA ERVQKSLAAEEEAARQRKAALEEVERLKAK K S L A R Q 4 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 10 0 1045.504 Q15149 Q15149 2130 2139 PLEC Plectin yes yes 2 0.015307 85.67 By MS/MS 1 0 1 1 13667000 0 13667000 0 12125 1348 12759 52665 43956 43956 1 0 6680400 0 SLAASSSFYGQR ILADSRHLWSPFGLRSLAASSSFYGQRNSE GLRSLAASSSFYGQRNSEHDPPYWRGAVWL R S L Q R N 2 1 0 0 0 1 0 1 0 0 1 0 0 1 0 4 0 0 1 0 0 0 12 0 1272.6099 Q13724 Q13724 730 741 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2 0.0018789 110.14 By MS/MS 2 0 1 1 6951300 0 0 6951300 12126 1266 12760 52666 43957 43957 1 0 0 1570900 SLAELSSR SVHGSQLGNAEDLQKSLAELSSRLDQQVED NAEDLQKSLAELSSRLDQQVEDFRRTVGPY K S L S R L 1 1 0 0 0 0 1 0 0 0 2 0 0 0 0 3 0 0 0 0 0 0 8 0 861.4556 CON__Q32PJ2 CON__Q32PJ2 288 295 yes yes 2 0.05227 85.265 By MS/MS 5 0 1 1 8557100 0 0 8557100 + 12127 81 12761 52667 43958 43958 0 0 0 1193600 SLAGMLTPYVAR LAEEQATPENPTIRKSLAGMLTPYVARKLA IRKSLAGMLTPYVARKLAVASVTEILKMLN K S L A R K 2 1 0 0 0 0 0 1 0 0 2 0 1 0 1 1 1 0 1 1 0 0 12 0 1277.6802 O75165 O75165 1608 1619 DNAJC13 DnaJ homolog subfamily C member 13 yes yes 2 0.0014846 112.75 By MS/MS 1 0 1 1 1552100 0 1552100 0 12128 245 12762 52668 43959 43959 1 0 758640 0 SLAGSSGPGASSGTSGDHGELVVR VILRDIARARENIQKSLAGSSGPGASSGTS ASSGTSGDHGELVVRIASLEVENQSLRGVV K S L V R I 2 1 0 1 0 0 1 6 1 0 2 0 0 0 1 6 1 0 0 2 0 0 24 0 2184.0407 P29692 P29692 60 83 EEF1D Elongation factor 1-delta yes yes 2;3 1.6231E-248 321.62 By MS/MS By MS/MS By MS/MS 5.36 1.67 1 1 1 1 5 1 1 1 2 8 348190000 7495200 35382000 305310000 12129 702 12763 52669;52670;52671;52672;52673;52674;52675;52676;52677;52678;52679 43960;43961;43962;43963;43964;43965;43966;43967;43968;43969;43970 43969 11 9980000 12644000 46958000 SLAIHLWYLLPPTASISR EKKQINVCSQLDWKRSLAIHLWYLLPPTAS IHLWYLLPPTASISRALSMYEEAFQNTSDS R S L S R A 2 1 0 0 0 0 0 0 1 2 4 0 0 0 2 3 1 1 1 0 0 0 18 0 2037.1411 P52948 P52948 1427 1444 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 6.5157E-05 96.666 By MS/MS 2 0 1 1 2907500 0 0 2907500 12130 916 12764 52680 43971 43971 1 0 0 657040 SLALLGQTFSLASSFR DLALALETTNSLCRKSLALLGQTFSLASSF LALLGQTFSLASSFRQEKILEAVGLQDIAP K S L F R Q 2 1 0 0 0 1 0 1 0 0 4 0 0 2 0 4 1 0 0 0 0 0 16 0 1696.9148 Q8IX01 Q8IX01 479 494 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 2 3.3937E-05 128.36 By MS/MS 2 0 1 1 1042700 0 1042700 0 12131 1578 12765 52681 43972 43972 1 0 469520 0 SLAPSIHGHDYVK FSKTRSKDIFDQLAKSLAPSIHGHDYVKKA AKSLAPSIHGHDYVKKAILCLLLGGVERDL K S L V K K 1 0 0 1 0 0 0 1 2 1 1 1 0 0 1 2 0 0 1 1 0 0 13 0 1422.7256 P25205 P25205 302 314 MCM3 DNA replication licensing factor MCM3 yes yes 3 0.03984 48.112 By MS/MS 2 0 1 1 4309200 0 0 4309200 12132 655 12766 52682 43973 43973 1 0 0 973790 SLAPSLLDR LTVILLLICTCAYIRSLAPSLLDRNKTGLL TCAYIRSLAPSLLDRNKTGLLGIFWKCARI R S L D R N 1 1 0 1 0 0 0 0 0 0 3 0 0 0 1 2 0 0 0 0 0 0 9 0 970.54475 Q8TBQ9 Q8TBQ9 26 34 TMEM167A Protein kish-A yes yes 2 2.7331E-05 150.4 By MS/MS 10 0 1 1 6582100 0 0 6582100 12133 1659 12767 52683 43974 43974 1 0 0 14396000 SLAPYAQDTQEK EFKVKIDQTVEELRRSLAPYAQDTQEKLNH LRRSLAPYAQDTQEKLNHQLEGLTFQMKKN R S L E K L 2 0 0 1 0 2 1 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 12 0 1349.6463 P06727 P06727 222 233 APOA4 Apolipoprotein A-IV yes yes 2 1.978E-06 162.8 By MS/MS 9 0 1 1 5915600 5915600 0 0 12134 446 12768 52684 43975 43975 1 3320500 0 0 SLAPYAQDVQGK QLQTKIEENVEELRRSLAPYAQDVQGKLNH LRRSLAPYAQDVQGKLNHQLEGLAFQMKKH R S L G K L 2 0 0 1 0 2 0 1 0 0 1 1 0 0 1 1 0 0 1 1 0 0 12 0 1275.6459 CON__Q32PJ2 CON__Q32PJ2 222 233 yes yes 2 0.000198 132.01 By MS/MS By MS/MS 6 0.816 2 2 2 3 3 167880000 82568000 0 85309000 + 12135 81 12769 52685;52686;52687;52688;52689;52690 43976;43977;43978;43979;43980;43981 43976 6 119010000 0 12953000 SLAQAEAEKQKEEAER ALRLRLQAEEVAQQKSLAQAEAEKQKEEAE LAQAEAEKQKEEAEREARRRGKAEEQAVRQ K S L E R E 4 1 0 0 0 2 5 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 16 2 1815.8963 Q15149 Q15149 1793 1808 PLEC Plectin yes yes 3 1.0619E-05 127.75 By MS/MS By MS/MS 1 0 2 1 1 13053000 0 6479000 6574400 12136 1348 12770 52691;52692 43982;43983 43983 2 0 3166800 1416600 SLASVSYAAVDFFR STMDLVKSKSMDAIRSLASVSYAAVDFFRP RSLASVSYAAVDFFRPSAQRLIEEKGAVDA R S L F R P 3 1 0 1 0 0 0 0 0 0 1 0 0 2 0 3 0 0 1 2 0 0 14 0 1531.7671 Q9BQ39 Q9BQ39 533 546 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 1.1584E-05 100.72 By MS/MS By MS/MS 3 0 2 1 1 402440 0 402440 0 12137 1876 12771 52693;52694 43984;43985 43985 2 0 171560 0 SLASVSYAAVDFFRPSAQR STMDLVKSKSMDAIRSLASVSYAAVDFFRP VSYAAVDFFRPSAQRLIEEKGAVDALAAAL R S L Q R L 4 2 0 1 0 1 0 0 0 0 1 0 0 2 1 4 0 0 1 2 0 0 19 1 2071.0487 Q9BQ39 Q9BQ39 533 551 DDX50 ATP-dependent RNA helicase DDX50 yes yes 3 6.5911E-10 151.62 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 16163000 0 6071600 10092000 12138 1876 12772 52695;52696;52697 43986;43987 43987 2 0 2588300 2056800 SLATMDSPPHQK FTPELQPKASQSRKRSLATMDSPPHQKQPQ RKRSLATMDSPPHQKQPQRGEVSQKTVIIK R S L Q K Q 1 0 0 1 0 1 0 0 1 0 1 1 1 0 2 2 1 0 0 0 0 0 12 0 1310.6289 Q14676 Q14676 1814 1825 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 9.3319E-11 125.57 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 4808000 0 798040 4010000 12139 1310 12773 52698;52699;52700;52701 43988;43989;43990 43990 2 0 390070 870120 SLAVSGLGVIGR SLECTLILTEGDSAKSLAVSGLGVIGRDRY SAKSLAVSGLGVIGRDRYGVFPLRGKILNV K S L G R D 1 1 0 0 0 0 0 3 0 1 2 0 0 0 0 2 0 0 0 2 0 0 12 0 1127.6663 Q02880 Q02880 488 499 TOP2B DNA topoisomerase 2-beta yes yes 2 6.4017E-05 143.37 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 60219000 0 21474000 38745000 12140 1150 12774 52702;52703;52704;52705;52706 43991;43992;43993;43994 43993 4 0 10125000 8386600 SLDDFQAWLGR EESLGEARRLQDFLRSLDDFQAWLGRTQTA DFLRSLDDFQAWLGRTQTAVASEEGPATLP R S L G R T 1 1 0 2 0 1 0 1 0 0 2 0 0 1 0 1 0 1 0 0 0 0 11 0 1306.6306 O15020 O15020 1073 1083 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.0013398 110.87 By MS/MS 1 0 1 1 1473800 0 1473800 0 12141 160 12775 52707 43995 43995 1 0 720370 0 SLDEMEK AQHGTFEYEYSQRWKSLDEMEKQQREQVEK YEYSQRWKSLDEMEKQQREQVEKNMKDAKD K S L E K Q 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 7 0 850.37423 P23246 P23246 496 502 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 0.011563 117.93 By MS/MS By MS/MS 3.83 1.34 1 2 1 1 1 3 3 183790000 0 61377000 122420000 12142 638 12776 52708;52709;52710;52711;52712;52713 43996;43997;43998;43999;44000 43996 4 0 27318000 23499000 SLDEMEKQQR AQHGTFEYEYSQRWKSLDEMEKQQREQVEK SQRWKSLDEMEKQQREQVEKNMKDAKDKLE K S L Q R E 0 1 0 1 0 2 2 0 0 0 1 1 1 0 0 1 0 0 0 0 0 0 10 1 1262.5925 P23246 P23246 496 505 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2;3 1.6944E-06 161.37 By MS/MS By matching 2.33 0.471 2 1 2 1 9871800 0 8912300 959570 12143 638 12777 52714;52715;52716 44001;44002 44001 2 0 4013300 186110 SLDFYTR FLLQQTMLRVKDPKKSLDFYTRVLGMTLIQ LRVKDPKKSLDFYTRVLGMTLIQKCDFPIM K S L T R V 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 1 0 1 0 0 0 7 0 900.43413 Q04760 Q04760 45 51 GLO1 Lactoylglutathione lyase yes yes 2 0.024818 97.068 By MS/MS By MS/MS 9 1.41 1 2 2 1 9206100 0 4787200 4418900 12144 1160 12778 52717;52718;52719 44003;44004 44004 2 0 6534900 9664500 SLDGAPIGVMDQSLMK PAPHFERTSSKRVSRSLDGAPIGVMDQSLM LDGAPIGVMDQSLMKDFPGAAGEISAYGPG R S L M K D 1 0 0 2 0 1 0 2 0 1 2 1 2 0 1 2 0 0 0 1 0 0 16 0 1660.8164 O43491 O43491 550 565 EPB41L2 Band 4.1-like protein 2 yes yes 2 3.5458E-05 123.95 By MS/MS By matching 2.5 0.5 1 1 1 1 7821800 0 3971600 3850200 12145 199 12779 52720;52721 44005 44005 1 0 1788500 746760 SLDIFIK KYNEFSVSLLNEDPKSLDIFIKAVHTTKEL SLLNEDPKSLDIFIKAVHTTKELYAGMPTI K S L I K A 0 0 0 1 0 0 0 0 0 2 1 1 0 1 0 1 0 0 0 0 0 0 7 0 834.48511 Q9H583 Q9H583 1081 1087 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.024814 97.071 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 15583000 672720 4120300 10790000 12146 1984 12780 52722;52723;52724;52725 44006;44007 44007 2 672720 2014000 2340400 SLDLDSIIAEVK QISETNVILSMDNNRSLDLDSIIAEVKAQY NNRSLDLDSIIAEVKAQYEDIAQKSKAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 2 1 0 0 0 2 0 0 0 1 0 0 12 0 1301.7078 CON__P50446;P04264;CON__P04264 P04264 344 355 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 1.3245E-17 185.29 By MS/MS By MS/MS By MS/MS 5 2.81 10 8 8 9 7 8 7 6 6 5 36 13 25 12243000000 8222100000 658060000 3362400000 + 12147 413;69 12781 52726;52727;52728;52729;52730;52731;52732;52733;52734;52735;52736;52737;52738;52739;52740;52741;52742;52743;52744;52745;52746;52747;52748;52749;52750;52751;52752;52753;52754;52755;52756;52757;52758;52759;52760;52761;52762;52763;52764;52765;52766;52767;52768;52769;52770;52771;52772;52773;52774;52775;52776;52777;52778;52779;52780;52781;52782;52783;52784;52785;52786;52787;52788;52789;52790;52791;52792;52793;52794;52795;52796;52797;52798;52799 44008;44009;44010;44011;44012;44013;44014;44015;44016;44017;44018;44019;44020;44021;44022;44023;44024;44025;44026;44027;44028;44029;44030;44031;44032;44033;44034;44035;44036;44037;44038;44039;44040;44041;44042;44043;44044;44045;44046;44047;44048;44049;44050;44051;44052;44053;44054;44055;44056;44057;44058;44059;44060;44061;44062;44063;44064;44065;44066;44067;44068;44069;44070;44071;44072;44073;44074;44075;44076;44077;44078;44079;44080;44081;44082;44083;44084;44085;44086;44087;44088;44089;44090;44091;44092;44093;44094 44035 86 7233200000 343050000 669540000 SLDLDSIIAEVR HISDTSVVLSMDNNRSLDLDSIIAEVRAQY NNRSLDLDSIIAEVRAQYEDIAQRSKAEAE R S L V R A 1 1 0 2 0 0 1 0 0 2 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1329.714 CON__P12035;P12035 CON__P12035 364 375 KRT3 Keratin, type II cytoskeletal 3 yes no 2 0.055721 71.614 By MS/MS 1 0 1 1 1872300 0 1872300 0 + 12148 54 12782 52800 44095 44095 1 0 915170 0 SLDLFNCEVTNLNDYR DISTLEPLKKLECLKSLDLFNCEVTNLNDY LDLFNCEVTNLNDYRESVFKLLPQLTYLDG K S L Y R E 0 1 3 2 1 0 1 0 0 0 3 0 0 1 0 1 1 0 1 1 0 0 16 0 1971.8996 Q92688;P39687 Q92688 117 132 ANP32B;ANP32A Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A yes no 2 5.3458E-47 224.82 By MS/MS 6 0 1 1 6094900 0 0 6094900 12149 1716 12783 52801 44096 44096 1 0 0 911860 SLDLIESLLR KAPPEDDNREIATWKSLDLIESLLRLAEVG IATWKSLDLIESLLRLAEVGQYEQVKQLFS K S L L R L 0 1 0 1 0 0 1 0 0 1 4 0 0 0 0 2 0 0 0 0 0 0 10 0 1157.6656 A5YKK6 A5YKK6 450 459 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.00041034 118.33 By MS/MS 1 0 1 1 1774400 0 0 1774400 12150 10 12784 52802 44097 44097 1 0 0 382320 SLDMDSIIAEVK QISDTSVVLSMDNSRSLDMDSIIAEVKAQY NSRSLDMDSIIAEVKAQYEDIANRSRAEAE R S L V K A 1 0 0 2 0 0 1 0 0 2 1 1 1 0 0 2 0 0 0 1 0 0 12 0 1319.6643 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 253 264 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 4.6874E-06 161.17 By MS/MS By MS/MS By MS/MS 4.28 1.48 1 1 2 7 4 1 2 2 7 9 1477000000 39266000 180030000 1257700000 + 12151 49 12785;12786 52803;52804;52805;52806;52807;52808;52809;52810;52811;52812;52813;52814;52815;52816;52817;52818;52819;52820 44098;44099;44100;44101;44102;44103;44104;44105;44106;44107;44108;44109;44110;44111;44112;44113;44114 44103 31 16 30787000 55799000 207540000 SLDPSNLEHLITPLVTIGHIALLAPDQFAAPLK SKETQFAQIFEPLHKSLDPSNLEHLITPLV HIALLAPDQFAAPLKSLVATFIVKDLLMND K S L L K S 4 0 1 2 0 1 1 1 2 3 7 1 0 1 4 2 2 0 0 1 0 0 33 0 3503.9392 Q9NTI5 Q9NTI5 754 786 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3;4;5 2.9422E-27 108.52 By MS/MS 1.75 0.433 1 3 4 84691000 0 0 84691000 12152 2053 12787 52821;52822;52823;52824 44115;44116;44117;44118 44116 4 0 0 19115000 SLDQAINDK TSKEERDKWIKKELKSLDQAINDKKRQIAA IKKELKSLDQAINDKKRQIAAIHKDLEDTE K S L D K K 1 0 1 2 0 1 0 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 9 0 1002.4982 Q9UQE7 Q9UQE7 401 409 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00068512 114.5 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 21977000 0 7802700 14174000 12153 2222 12788 52825;52826;52827;52828 44119;44120 44120 2 0 3513700 3066900 SLEAEILQLQEELASSER DEIFAQSKESEKKLKSLEAEILQLQEELAS AEILQLQEELASSERARRHAEQERDELADE K S L E R A 2 1 0 0 0 2 5 0 0 1 4 0 0 0 0 3 0 0 0 0 0 0 18 0 2044.0324 P35580 P35580 1684 1701 MYH10 Myosin-10 yes yes 2;3 2.5654E-233 323.46 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 31208000 0 1828400 29380000 12154 753 12789 52829;52830;52831;52832;52833 44121;44122;44123;44124;44125 44124 4 0 893690 6353100 SLEAQVAHADQQLR KEAEQTCRHLTAQVRSLEAQVAHADQQLRD RSLEAQVAHADQQLRDLGKFQVATDALKSR R S L L R D 3 1 0 1 0 3 1 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 14 0 1564.7958 Q14980 Q14980 1682 1695 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.2827E-72 244.18 By MS/MS By MS/MS By MS/MS 1.29 0.452 5 2 1 2 4 276810000 0 54966000 221840000 12155 1327 12790 52834;52835;52836;52837;52838;52839;52840 44126;44127;44128;44129;44130;44131 44131 6 0 26867000 47900000 SLEDALAEAQR ELEKRKDKETGGILRSLEDALAEAQRVNTK GILRSLEDALAEAQRVNTKSQSAFDLKKKN R S L Q R V 3 1 0 1 0 1 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 11 0 1201.5939 O95347 O95347 298 308 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00010244 141.02 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 21439000 0 7506200 13933000 12156 321 12791 52841;52842;52843 44132;44133 44133 2 0 3479900 3148500 SLEDENKEAFR EALRPLTKENQEPLRSLEDENKEAFRSLEK EPLRSLEDENKEAFRSLEKENQEPLKTLEE R S L F R S 1 1 1 1 0 0 3 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 11 1 1336.6259 P48681 P48681 702 712 NES Nestin yes yes 2 2.4597E-09 121.73 By MS/MS 1 0 1 1 0 0 0 0 12157 846 12792 52844 44134 44134 1 0 0 0 SLEDVTAEYIHK YKEAQAELEDYRKRKSLEDVTAEYIHKAEH KRKSLEDVTAEYIHKAEHEKLMQLTNVSRA K S L H K A 1 0 0 1 0 0 2 0 1 1 1 1 0 0 0 1 1 0 1 1 0 0 12 0 1403.6933 Q9P0K7 Q9P0K7 667 678 RAI14 Ankycorbin yes yes 2 0.02104 84.054 By MS/MS 2 0 1 1 16572000 0 0 16572000 12158 2115 12793 52845 44135 44135 1 0 0 3745000 SLEEAEAYSR IVEEVKAQYDAVAARSLEEAEAYSRSQLEE AVAARSLEEAEAYSRSQLEEQAARSAEYGS R S L S R S 2 1 0 0 0 0 3 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 10 0 1153.5251 Q6KB66;CON__Q6KB66-1;CON__Q0VBK2 Q6KB66 266 275 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.0030418 103.55 By MS/MS 9.5 0.5 1 1 2 5253400 5253400 0 0 + 12159 93 12794 52846;52847 44136 44136 1 3361100 0 0 SLEEEKYDMSGAR ______________________________ PRSLEEEKYDMSGARLALILCVTKAREGSE R S L A R L 1 1 0 1 0 0 3 1 0 0 1 1 1 0 0 2 0 0 1 0 0 0 13 1 1513.6719 P31944 P31944 6 18 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2;3 8.1037E-44 218.11 By MS/MS By MS/MS 6.29 3.01 3 1 1 2 2 2 2 4 3 4 20 4 239590000 231450000 0 8143100 12160 723 12795;12796 52848;52849;52850;52851;52852;52853;52854;52855;52856;52857;52858;52859;52860;52861;52862;52863;52864;52865;52866;52867;52868;52869;52870;52871 44137;44138;44139;44140;44141;44142;44143;44144;44145;44146;44147;44148;44149;44150;44151;44152;44153;44154;44155 44149 19 203700000 0 8428300 SLEEGEGPIAVIMTPTR IAFLLPMFRHIMDQRSLEEGEGPIAVIMTP EEGEGPIAVIMTPTRELALQITKECKKFSK R S L T R E 1 1 0 0 0 0 3 2 0 2 1 0 1 0 2 1 2 0 0 1 0 0 17 0 1798.9135 Q7L014 Q7L014 439 455 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 3.5363E-09 168.61 By MS/MS 2 0 1 1 5743000 0 0 5743000 12161 1520 12797 52872 44156 44156 1 0 0 1297800 SLEEIYLFSLPIK PVTKLGRLVKDMKIKSLEEIYLFSLPIKES IKSLEEIYLFSLPIKESEIIDFFLGASLKD K S L I K E 0 0 0 0 0 0 2 0 0 2 3 1 0 1 1 2 0 0 1 0 0 0 13 0 1550.8596 P15880 P15880 77 89 RPS2 40S ribosomal protein S2 yes yes 2 0.00034153 141.88 By MS/MS By MS/MS 3.33 2.05 1 1 1 2 1 18809000 0 17547000 1261400 12162 571 12798 52873;52874;52875 44157;44158;44159 44158 3 0 6112800 271800 SLEEKNESLTEHPR NNLLKNNLLNTKLEKSLEEKNESLTEHPRS KSLEEKNESLTEHPRSTELPKTHIEQIQKH K S L P R S 0 1 1 0 0 0 4 0 1 0 2 1 0 0 1 2 1 0 0 0 0 0 14 1 1667.8115 Q99590 Q99590 680 693 SCAF11 Protein SCAF11 yes yes 3 8.4034E-05 131.66 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 7404400 0 2192400 5211900 12163 1853 12799 52876;52877;52878 44160;44161 44161 2 0 987290 1139900 SLEELPVDIILASVG RLLLLDTVTMQVTARSLEELPVDIILASVG SLEELPVDIILASVG_______________ R S L V G - 1 0 0 1 0 0 2 1 0 2 3 0 0 0 1 2 0 0 0 2 0 0 15 0 1553.8552 Q9Y678 Q9Y678 860 874 COPG1 Coatomer subunit gamma-1 yes yes 2 0.004691 84.213 By MS/MS 1.5 0.5 1 1 2 3330500 0 0 3330500 12164 2308 12800 52879;52880 44162 44162 1 0 0 749350 SLEGADLPNLLFYGPPGTGK DEVAFQEEVVAVLKKSLEGADLPNLLFYGP DLPNLLFYGPPGTGKTSTILAAARELFGPE K S L G K T 1 0 1 1 0 0 1 4 0 0 4 1 0 1 3 1 1 0 1 0 0 0 20 0 2045.047 P35249 P35249 65 84 RFC4 Replication factor C subunit 4 yes yes 2;3 3.6175E-15 162.93 By MS/MS By MS/MS 5.75 0.433 1 3 1 3 42518000 0 3429000 39089000 12165 744 12801 52881;52882;52883;52884 44163;44164;44165;44166 44163 4 0 1187000 5800500 SLEGDLEDLKDQIAQLEASLAAAK NSKDAALATALGDKKSLEGDLEDLKDQIAQ KDQIAQLEASLAAAKKQLADETLLKVDLEN K S L A K K 5 0 0 3 0 2 3 1 0 1 5 2 0 0 0 2 0 0 0 0 0 0 24 1 2527.3017 P20700 P20700 158 181 LMNB1 Lamin-B1 yes yes 3 1.5932E-15 116.65 By MS/MS 3.5 1.12 1 1 1 1 4 20410000 0 0 20410000 12166 619 12802 52885;52886;52887;52888 44167;44168 44167 2 0 0 4324100 SLEGGNFIAGVLIQGTQER TTTVKEVAEMDSVKRSLEGGNFIAGVLIQG GNFIAGVLIQGTQERMSIPEALRRHILRPG R S L E R M 1 1 1 0 0 2 2 4 0 2 2 0 0 1 0 1 1 0 0 1 0 0 19 0 1988.0327 P58107 P58107 1566 1584 EPPK1 Epiplakin yes yes 2;3 6.5507E-09 127.02 By MS/MS 1 0 2 2 2920900 0 2920900 0 12167 958 12803 52889;52890 44169;44170 44169 2 0 1427700 0 SLEPMAGQLSNSVATK IRDEIKKTVPPCVSRSLEPMAGQLSNSVAT LEPMAGQLSNSVATKLTAVEGSMKENISKL R S L T K L 2 0 1 0 0 1 1 1 0 0 2 1 1 0 1 3 1 0 0 1 0 0 16 0 1631.8189 Q6P2E9 Q6P2E9 1058 1073 EDC4 Enhancer of mRNA-decapping protein 4 yes yes 2 0.0048942 81.278 By MS/MS 2 0 1 1 4622500 0 4622500 0 12168 1489 12804 52891 44171 44171 1 0 2081600 0 SLEQNIQLPAALLSR LAAANPAYGRYNPRRSLEQNIQLPAALLSR SLEQNIQLPAALLSRFDLLWLIQDRPDRDN R S L S R F 2 1 1 0 0 2 1 0 0 1 4 0 0 0 1 2 0 0 0 0 0 0 15 0 1651.9257 P33993 P33993 500 514 MCM7 DNA replication licensing factor MCM7 yes yes 2;3 2.6139E-07 166.7 By matching By MS/MS By MS/MS 2.5 0.764 1 1 4 2 3 1 28087000 1288900 15354000 11444000 12169 733 12805 52892;52893;52894;52895;52896;52897 44172;44173;44174 44172 2 1413400 6560200 2219700 SLESFVELMK DAECLHRTELETKLKSLESFVELMKTIYEQ ETKLKSLESFVELMKTIYEQELKDLAAQVK K S L M K T 0 0 0 0 0 0 2 0 0 0 2 1 1 1 0 2 0 0 0 1 0 0 10 0 1181.6002 Q6KB66;CON__Q6KB66-1 Q6KB66 208 217 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.0041356 99.802 By MS/MS 8.5 0.5 1 1 2 4478100 4478100 0 0 + 12170 93 12806 52898;52899 44175;44176 44176 2 3117000 0 0 SLESINSR ______________________________ AAKKTKKSLESINSRLQLVMKSGKYVLGYK K S L S R L 0 1 1 0 0 0 1 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 8 0 904.46141 P62888 P62888 10 17 RPL30 60S ribosomal protein L30 yes yes 2 0.016826 86.794 By MS/MS 9 0 1 1 10537000 0 10537000 0 12171 1046 12807 52900 44177 44177 1 0 8437700 0 SLESLDTSLFAK TLEERAQRLFSTKGKSLESLDTSLFAKNPK KGKSLESLDTSLFAKNPKSKGTKRDTERNK K S L A K N 1 0 0 1 0 0 1 0 0 0 3 1 0 1 0 3 1 0 0 0 0 0 12 0 1309.6765 Q12874 Q12874 292 303 SF3A3 Splicing factor 3A subunit 3 yes yes 2 7.0288E-12 175.73 By MS/MS By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 57600000 8273900 11120000 38205000 12172 1206 12808 52901;52902;52903;52904 44178;44179;44180;44181 44178 4 6455100 3690400 6659700 SLESLHSFVAAATK LQYAKLLNSSKARLRSLESLHSFVAAATKE RSLESLHSFVAAATKELMWLNEKEEEEVGF R S L T K E 3 0 0 0 0 0 1 0 1 0 2 1 0 1 0 3 1 0 0 1 0 0 14 0 1459.7671 Q15149 Q15149 751 764 PLEC Plectin yes yes 2;3 1.009E-187 253.79 By matching By MS/MS By MS/MS 1 0 4 1 2 1 25720000 846920 10599000 14274000 12173 1348 12809 52905;52906;52907;52908 44182;44183;44184 44183 3 846920 5180400 3075600 SLESNPEQLQAMR VPLLPSDVKLKLYDRSLESNPEQLQAMRHI DRSLESNPEQLQAMRHIVTGTTRPAPYIIF R S L M R H 1 1 1 0 0 2 2 0 0 0 2 0 1 0 1 2 0 0 0 0 0 0 13 0 1501.7195 Q9HCE1 Q9HCE1 496 508 MOV10 Putative helicase MOV-10 yes yes 2 1.3712E-46 177.06 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 18250000 0 15297000 2952800 12174 2011 12810;12811 52909;52910;52911;52912 44185;44186;44187;44188 44187 692 4 0 6888600 572690 SLETENAGLR QELNDRLAVYIDRVRSLETENAGLRLRITE IDRVRSLETENAGLRLRITESEEVVSREVS R S L L R L 1 1 1 0 0 0 2 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 10 0 1088.5462 P02545 P02545 51 60 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 3.0059E-16 176.4 By MS/MS By MS/MS By MS/MS 3 1.29 2 2 4 2 2 1 6 5 589410000 18545000 111470000 459400000 12175 387 12812 52913;52914;52915;52916;52917;52918;52919;52920;52921;52922;52923;52924 44189;44190;44191;44192;44193;44194;44195;44196;44197;44198;44199;44200;44201 44194 13 21397000 45264000 87392000 SLETENR QSLNDRLASYLDRVRSLETENRRLESKIRE ASYLDRVRSLETENRRLESKIREHLEKKGP R S L N R R 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 7 0 847.40356 CON__P05784;P05783 P05783 100 106 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.011521 118.01 By MS/MS 5 0 1 1 2575500 0 2575500 0 + 12176 436;48 12813 52925 44202;44203;44204;44205;44206;44207;44208;44209;44210;44211 44206 10 0 663890 0 SLETENSALQLQVTER RELNDRLAVYIDKVRSLETENSALQLQVTE LETENSALQLQVTEREEVRGRELTGLKALY R S L E R E 1 1 1 0 0 2 3 0 0 0 3 0 0 0 0 2 2 0 0 1 0 0 16 0 1816.9167 P20700 P20700 52 67 LMNB1 Lamin-B1 yes yes 2;3 6.023E-199 310.85 By MS/MS By MS/MS By MS/MS 2.9 1.04 1 2 5 1 1 3 1 6 160440000 11160000 13280000 136000000 12177 619 12814 52926;52927;52928;52929;52930;52931;52932;52933;52934;52935 44212;44213;44214;44215;44216;44217;44218;44219;44220 44215 9 12965000 5661100 25823000 SLETENSALQLQVTEREEVR RELNDRLAVYIDKVRSLETENSALQLQVTE NSALQLQVTEREEVRGRELTGLKALYETEL R S L V R G 1 2 1 0 0 2 5 0 0 0 3 0 0 0 0 2 2 0 0 2 0 0 20 1 2330.1714 P20700 P20700 52 71 LMNB1 Lamin-B1 yes yes 3 5.0929E-58 224.19 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 2 5 111140000 0 22791000 88348000 12178 619 12815 52936;52937;52938;52939;52940;52941;52942 44221;44222;44223;44224 44224 4 0 9791600 16803000 SLFEASQQLLNEMK TKEKDQLSQSIVMYKSLFEASQQLLNEMKC KSLFEASQQLLNEMKCQVEEARLKEAQLRN K S L M K C 1 0 1 0 0 2 2 0 0 0 3 1 1 1 0 2 0 0 0 0 0 0 14 0 1636.8131 A6NHR9 A6NHR9 1642 1655 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 1.5483E-34 214.82 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 31915000 0 3798600 28116000 12179 15 12816 52943;52944;52945 44225;44226;44227 44226 3 0 1856700 6108300 SLFEQYGK FIGNLPREATEQEIRSLFEQYGKVLECDII ATEQEIRSLFEQYGKVLECDIIKNYGFVHI R S L G K V 0 0 0 0 0 1 1 1 0 0 1 1 0 1 0 1 0 0 1 0 0 0 8 0 970.476 Q9BWF3;Q9BQ04 Q9BWF3 20 27 RBM4;RBM4B RNA-binding protein 4;RNA-binding protein 4B yes no 1;2 0.0079821 120.46 By MS/MS 5.33 0.471 2 1 3 23004000 0 0 23004000 12180 1924 12817 52946;52947;52948 44228;44229 44228 2 0 0 3228100 SLFGQLHPPDEGHGD DHTTMNDDARTELYRSLFGQLHPPDEGHGD SLFGQLHPPDEGHGD_______________ R S L G D - 0 0 0 2 0 1 1 3 2 0 2 0 0 1 2 1 0 0 0 0 0 0 15 0 1604.7219 Q9NY61 Q9NY61 546 560 AATF Protein AATF yes yes 3 0.010829 57.328 By MS/MS By matching 3 0 2 1 1 14070000 8220500 0 5849200 12181 2094 12818 52949;52950 44230 44230 1 9484700 0 1134500 SLFGTTSGFGTSGTSMFGSATTDNHNPMK ______________________________ SMFGSATTDNHNPMKDIEVTSSPDDSIGCL M S L M K D 1 0 2 1 0 0 0 5 1 0 1 1 2 3 1 5 6 0 0 0 0 0 29 0 2937.2909 P78406 P78406 2 30 RAE1 mRNA export factor yes yes 3 1.6326E-43 167.1 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 40448000 0 17418000 23030000 12182 1087 12819 52951;52952;52953 44231;44232;44233 44233 3 0 4769800 3212300 SLFSSIGEVESAK IVNYLPQNMTQDELRSLFSSIGEVESAKLI LRSLFSSIGEVESAKLIRDKVAGHSLGYGF R S L A K L 1 0 0 0 0 0 2 1 0 1 1 1 0 1 0 4 0 0 0 1 0 0 13 0 1352.6824 Q15717 Q15717 38 50 ELAVL1 ELAV-like protein 1 yes yes 2 9.7279E-12 182.64 By MS/MS By MS/MS 7 0.894 2 1 2 3 2 326490000 0 117300000 209180000 12183 1380 12820 52954;52955;52956;52957;52958 44234;44235;44236 44236 3 0 41391000 31311000 SLFTDVVAEK TVTVSASLESVRENRSLFTDVVAEKDLFHC VRENRSLFTDVVAEKDLFHCVSFTLPRSPT R S L E K D 1 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 0 0 2 0 0 10 0 1107.5812 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 72 81 yes yes 2 0.018636 83.783 By MS/MS 3 0 1 1 9460400 0 0 9460400 + 12184 28 12821 52959 44237 44237 1 0 0 1834900 SLFVVVGDR RIRILIENGVAERQRSLFVVVGDRGKDQVV VAERQRSLFVVVGDRGKDQVVILHHMLSKA R S L D R G 0 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 3 0 0 9 0 990.54983 Q9H0A0 Q9H0A0 24 32 NAT10 N-acetyltransferase 10 yes yes 2 0.021029 81.548 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 29405000 0 3439400 25966000 12185 1959 12822 52960;52961;52962;52963 44238;44239 44238 2 0 1548800 5816900 SLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTR LQHLLHFSTPGLVLRSLGALTGPQLLSLAQ SHVLDAILTSPSVTRKLRRRVLQNLKGQYV R S L T R K 4 1 0 1 0 2 0 3 1 1 7 0 0 0 3 6 3 0 0 2 0 0 34 0 3356.8304 Q86U38 Q86U38 505 538 NOP9 Nucleolar protein 9 yes yes 3 1.0058E-25 96.134 By MS/MS 3 0 1 1 6313300 0 0 6313300 12186 1543 12823 52964 44240 44240 1 0 0 1224500 SLGAWNLENLR ETFRLLEEENQESLRSLGAWNLENLRSPEE ESLRSLGAWNLENLRSPEEVDKESQRNLEE R S L L R S 1 1 2 0 0 0 1 1 0 0 3 0 0 0 0 1 0 1 0 0 0 0 11 0 1271.6622 P48681 P48681 894 904 NES Nestin yes yes 2 0.055556 62.303 By MS/MS 1 0 1 1 2813400 0 2813400 0 12187 846 12824 52965 44241 44241 0 0 1375100 0 SLGETQLVLYGDVEELKR GSSEADQDGLASTVRSLGETQLVLYGDVEE ETQLVLYGDVEELKRSVGELPSTVESLQKV R S L K R S 0 1 0 1 0 1 3 2 0 0 4 1 0 0 0 1 1 0 1 2 0 0 18 1 2048.079 Q07065 Q07065 474 491 CKAP4 Cytoskeleton-associated protein 4 yes yes 3 0.0038808 57.338 By MS/MS 3 0 1 1 5370900 0 0 5370900 12188 1176 12825 52966 44242 44242 1 0 0 1041700 SLGNILQAKPTSSPAK SDGEVPTAVAPAQEKSLGNILQAKPTSSPA LGNILQAKPTSSPAKGPPQKAGPVAVQVKA K S L A K G 2 0 1 0 0 1 0 1 0 1 2 2 0 0 2 3 1 0 0 0 0 0 16 1 1610.8992 Q13428 Q13428 571 586 TCOF1 Treacle protein yes yes 2;3 1.0474E-45 219.97 By matching By MS/MS 1.4 0.49 3 2 1 4 98723000 0 1791200 96932000 12189 1247 12826 52967;52968;52969;52970;52971 44243;44244;44245 44244 3 0 875530 21264000 SLGPDVPELIILPVYSALPSEMQTR EEIDTACEILYERMKSLGPDVPELIILPVY ILPVYSALPSEMQTRIFDPAPPGSRKVVIA K S L T R I 1 1 0 1 0 1 2 1 0 2 4 0 1 0 4 3 1 0 1 2 0 0 25 0 2724.4408 Q14562 Q14562 799 823 DHX8 ATP-dependent RNA helicase DHX8 yes yes 3 0.00014083 57.802 By MS/MS 2 0 1 1 922840 0 922840 0 12190 1304 12827 52972 44246 44246 1 0 415570 0 SLGPPQGEEDSVPR ECMAPLTALVKHMHRSLGPPQGEEDSVPRD RSLGPPQGEEDSVPRDLPSWMKFLHGKLGN R S L P R D 0 1 0 1 0 1 2 2 0 0 1 0 0 0 3 2 0 0 0 1 0 0 14 0 1466.7001 P78527 P78527 2107 2120 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00012439 154.15 By MS/MS By MS/MS 1 0 2 1 1 39062000 0 10078000 28985000 12191 1089 12828 52973;52974 44247;44248 44248 2 0 4925800 6245200 SLGSTAGTDITVNSVILLPK KIWNMKTTECSNTFKSLGSTAGTDITVNSV AGTDITVNSVILLPKNPEHFVVCNRSNTVV K S L P K N 1 0 1 1 0 0 0 2 0 2 3 1 0 0 1 3 3 0 0 2 0 0 20 0 1985.1045 Q2TAY7 Q2TAY7 389 408 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 2.5006E-13 127.32 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 25583000 0 13043000 12541000 12192 1407 12829 52975;52976;52977 44249;44250 44249 2 0 4328400 2116700 SLGSVQAPSYGAR ______________________________ YRSLGSVQAPSYGARPVSSAASVYAGAGGS R S L A R P 2 1 0 0 0 1 0 2 0 0 1 0 0 0 1 3 0 0 1 1 0 0 13 0 1291.6521 P05783 P05783 15 27 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 1.0413E-57 232.84 By matching By MS/MS By MS/MS 5 2.75 2 2 2 2 3 2 2 1 2 1 9 8 1846500000 1984800 798430000 1046100000 12193 436 12830 52978;52979;52980;52981;52982;52983;52984;52985;52986;52987;52988;52989;52990;52991;52992;52993;52994;52995 44251;44252;44253;44254;44255;44256;44257;44258;44259;44260;44261;44262;44263;44264;44265;44266;44267;44268;44269 44256 19 2642700 242410000 158370000 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR ______________________________ SAASVYAGAGGSGSRISVSRSTSFRGGMGS R S L S R I 6 2 0 0 0 1 0 6 0 0 1 0 0 0 2 8 0 0 2 3 0 0 31 1 2853.4005 P05783 P05783 15 45 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 4.3702E-60 178.7 By MS/MS 4.5 0.5 1 1 2 46227000 0 46227000 0 12194 436 12831 52996;52997 44270 44270 1 0 12836000 0 SLGTADVHFER GTLKKAAVHYDRSGRSLGTADVHFERKADA RSGRSLGTADVHFERKADALKAMKQYNGVP R S L E R K 1 1 0 1 0 0 1 1 1 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1230.5993 Q86V81 Q86V81 145 155 ALYREF THO complex subunit 4 yes yes 2;3 6.3378E-10 171.56 By MS/MS By MS/MS By MS/MS 6 2.08 1 1 5 3 3 3 7 3 431570000 18324000 160660000 252580000 12195 1551 12832 52998;52999;53000;53001;53002;53003;53004;53005;53006;53007;53008;53009;53010 44271;44272;44273;44274;44275;44276;44277;44278 44275 8 37383000 62594000 37795000 SLGTRPPHVFAIADK PKIYSSEAIKSYQGKSLGTRPPHVFAIADK SLGTRPPHVFAIADKAFRDMKVLKMSQSII K S L D K A 2 1 0 1 0 0 0 1 1 1 1 1 0 1 2 1 1 0 0 1 0 0 15 1 1607.8784 Q9UM54 Q9UM54 119 133 MYO6 Unconventional myosin-VI yes yes 3 0.0025358 75.574 By MS/MS 2 0 1 1 9480000 0 9480000 0 12196 2198 12833 53011 44279 44279 1 0 4269000 0 SLGVDMDDKDDAHYAVQAR TAKKVQRTVLEKEMRSLGVDMDDKDDAHYA DMDDKDDAHYAVQARRSRSITRKRKREDSA R S L A R R 3 1 0 5 0 1 0 1 1 0 1 1 1 0 0 1 0 0 1 2 0 0 19 1 2104.9484 Q9BZE4 Q9BZE4 526 544 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 3;4 8.787E-05 89.261 By MS/MS 2.67 0.471 1 2 3 23029000 0 0 23029000 12197 1941 12834;12835 53012;53013;53014 44280;44281 44281 683 2 0 0 4562900 SLGYAYVNFQQPADAER PILSIRVCRDMITRRSLGYAYVNFQQPADA GYAYVNFQQPADAERALDTMNFDVIKGKPV R S L E R A 3 1 1 1 0 2 1 1 0 0 1 0 0 1 1 1 0 0 2 1 0 0 17 0 1927.9064 P11940;Q13310 P11940 51 67 PABPC1;PABPC4 Polyadenylate-binding protein 1;Polyadenylate-binding protein 4 no no 2 1.4664E-130 277.06 By MS/MS By MS/MS 4.82 3.16 1 2 2 2 1 1 2 6 5 177080000 0 77737000 99339000 12198 530;1237 12836 53015;53016;53017;53018;53019;53020;53021;53022;53023;53024;53025 44282;44283;44284;44285;44286;44287;44288;44289;44290;44291 44283 10 0 42124000 21129000 SLGYDLPMVEEGEPDPEFEAILDTVDPNR KSGRLNHQEFKSCLRSLGYDLPMVEEGEPD DPEFEAILDTVDPNRDGHVSLQEYMAFMIS R S L N R D 1 1 1 4 0 0 5 2 0 1 3 0 1 1 4 1 1 0 1 2 0 0 29 0 3246.4915 Q13813 Q13813 2354 2382 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.00011367 46.145 By MS/MS 1.5 0.5 1 1 2 6288400 0 0 6288400 12199 1268 12837 53026;53027 44292 44292 1 0 0 1389900 SLHLDNFSNR DYAPIIPANMDKKYRSLHLDNFSNRIGKHY DKKYRSLHLDNFSNRIGKHYKKVVYKQYQD R S L N R I 0 1 2 1 0 0 0 0 1 0 2 0 0 1 0 2 0 0 0 0 0 0 10 0 1201.584 CON__Q28107 CON__Q28107 377 386 yes yes 3 0.023914 60.064 By matching By matching By MS/MS 9.67 0.471 1 2 1 1 1 3073600 538410 404830 2130400 + 12200 77 12838 53028;53029;53030 44293 44293 1 302210 2048100 4659400 SLHSAGPPLLAVTAAPPAQPLAK LNIPHPSVISSPLLKSLHSAGPPLLAVTAA LLAVTAAPPAQPLAKKKGVKRKADTTTPTP K S L A K K 6 0 0 0 0 1 0 1 1 0 4 1 0 0 5 2 1 0 0 1 0 0 23 0 2206.2474 P25440 P25440 253 275 BRD2 Bromodomain-containing protein 2 yes yes 3 2.6976E-11 101.62 By MS/MS By MS/MS 2.75 0.829 2 1 1 3 1 59456000 0 21112000 38344000 12201 658 12839 53031;53032;53033;53034 44294;44295;44296 44294 3 0 9176900 8665100 SLHTLFGDELCK AKTCVADESHAGCEKSLHTLFGDELCKVAS CEKSLHTLFGDELCKVASLRETYGDMADCC K S L C K V 0 0 0 1 1 0 1 1 1 0 3 1 0 1 0 1 1 0 0 0 0 0 12 0 1418.6864 CON__P02769 CON__P02769 89 100 yes yes 2;3 0.00012095 123.42 By MS/MS By MS/MS By MS/MS 5.11 2.42 1 1 3 1 1 1 1 7 1 1 141650000 131570000 1795400 8283100 + 12202 45 12840 53035;53036;53037;53038;53039;53040;53041;53042;53043 44297;44298;44299;44300;44301;44302 44299 6 104670000 595840 1606500 SLHTLFGDK AKTCVADESAENCDKSLHTLFGDKLCTVAT AENCDKSLHTLFGDKLCTVATLRETYGEMA K S L D K L 0 0 0 1 0 0 0 1 1 0 2 1 0 1 0 1 1 0 0 0 0 0 9 0 1016.5291 CON__P02768-1;P02768 CON__P02768-1 89 97 ALB Serum albumin yes no 2 0.00018664 141.2 By MS/MS 5.5 4.03 1 1 1 1 4 385360000 385360000 0 0 + 12203 44 12841 53044;53045;53046;53047 44303;44304;44305 44304 3 241990000 0 0 SLHTLFGDKLCTVATLR AKTCVADESAENCDKSLHTLFGDKLCTVAT HTLFGDKLCTVATLRETYGEMADCCAKQEP K S L L R E 1 1 0 1 1 0 0 1 1 0 4 1 0 1 0 1 3 0 0 1 0 0 17 1 1931.0299 CON__P02768-1;P02768 CON__P02768-1 89 105 ALB Serum albumin yes no 4 3.687E-08 163.02 By MS/MS 9 0 1 1 28233000 28233000 0 0 + 12204 44 12842 53048 44306 44306 1 15848000 0 0 SLIAEVLVK LGVKRCTDQMSLQKRSLIAEVLVKILKKCS MSLQKRSLIAEVLVKILKKCSV________ R S L V K I 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 1 0 0 0 2 0 0 9 0 970.60628 O95969 O95969 75 83 SCGB1D2 Secretoglobin family 1D member 2 yes yes 2 0.0023273 104.44 By MS/MS By MS/MS 6.4 2.94 1 1 1 2 1 1 1 2 7 3 204180000 192090000 0 12084000 12205 350 12843 53049;53050;53051;53052;53053;53054;53055;53056;53057;53058 44307;44308;44309;44310;44311;44312;44313 44308 7 189630000 0 13258000 SLINDYVK SEAFPTNFRDSEAARSLINDYVKNKTQGKI RDSEAARSLINDYVKNKTQGKIEELFKYLS R S L V K N 0 0 1 1 0 0 0 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 950.5073 CON__Q9TTE1;CON__A2I7N1;CON__A2I7N0 CON__Q9TTE1 172 179 yes no 2 0.032544 77.282 By MS/MS 4 0 1 1 8196100 8196100 0 0 + 12206 100 12844 53059 44314 44314 1 6394400 0 0 SLIPSYIR VRLQLWDTAGQERFRSLIPSYIRDSTVAVV AGQERFRSLIPSYIRDSTVAVVVYDITNVN R S L I R D 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 0 0 1 0 0 0 8 0 947.54402 P20340;Q9NRW1 P20340 77 84 RAB6A;RAB6B Ras-related protein Rab-6A;Ras-related protein Rab-6B yes no 2 0.0041239 102.71 By MS/MS By MS/MS 7 0 2 1 1 6201800 0 2055700 4146100 12207 615 12845 53060;53061 44315;44316 44315 2 0 1180400 735700 SLIYKPLDGEWGTNPR EELGTSVPLTDGECRSLIYKPLDGEWGTNP LIYKPLDGEWGTNPRDEECERIVAGINQLM R S L P R D 0 1 1 1 0 0 1 2 0 1 2 1 0 0 2 1 1 1 1 0 0 0 16 1 1844.9421 Q8WWQ0 Q8WWQ0 1146 1161 PHIP PH-interacting protein yes yes 2;3 1.2757E-05 116.13 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 20431000 0 2723000 17708000 12208 1690 12846 53062;53063;53064;53065 44317;44318;44319;44320 44318 4 0 1331000 3855800 SLLALINVLNALADAK HAKGERLREGANINRSLLALINVLNALADA LLALINVLNALADAKGRKTHVPYRDSKLTR R S L A K G 4 0 2 1 0 0 0 0 0 1 5 1 0 0 0 1 0 0 0 1 0 0 16 0 1637.9716 Q86Y91 Q86Y91 280 295 KIF18B Kinesin-like protein KIF18B yes yes 2;3 3.0878E-05 149.26 By MS/MS 2.5 0.5 2 2 4 8567200 0 0 8567200 12209 1562 12847 53066;53067;53068;53069 44321;44322;44323 44321 3 0 0 1906600 SLLAWQSLR QALVTLWHQLHVDMKSLLAWQSLRRDVQLI LHVDMKSLLAWQSLRRDVQLIRSWSLATFR K S L L R R 1 1 0 0 0 1 0 0 0 0 3 0 0 0 0 2 0 1 0 0 0 0 9 0 1072.6029 Q15149 Q15149 1029 1037 PLEC Plectin yes yes 2 0.0007258 131.03 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 30722000 1635300 14155000 14932000 12210 1348 12848 53070;53071;53072;53073 44324;44325 44325 2 1635300 6918600 3232300 SLLAWQSLRRDVQLIR QALVTLWHQLHVDMKSLLAWQSLRRDVQLI LLAWQSLRRDVQLIRSWSLATFRTLKPEEQ K S L I R S 1 3 0 1 0 2 0 0 0 1 4 0 0 0 0 2 0 1 0 1 0 0 16 2 1953.1272 Q15149 Q15149 1029 1044 PLEC Plectin yes yes 2 0.014593 72.434 By MS/MS 8 0 1 1 145400000 0 0 145400000 12211 1348 12849 53074 44326 44326 0 0 0 22291000 SLLEGEGSSGGGGR LDIKIRLENEIQTYRSLLEGEGSSGGGGRG RSLLEGEGSSGGGGRGGGSFGGGYGGGSSG R S L G R G 0 1 0 0 0 0 2 6 0 0 2 0 0 0 0 3 0 0 0 0 0 0 14 0 1261.5899 P13645;CON__P13645 P13645 451 464 KRT10 Keratin, type I cytoskeletal 10 yes no 2 5.4305E-34 208.6 By MS/MS By MS/MS By MS/MS 5.27 2.78 3 3 4 3 3 3 3 3 3 2 10 10 10 8771400000 7315400000 254350000 1201600000 + 12212 56 12850 53075;53076;53077;53078;53079;53080;53081;53082;53083;53084;53085;53086;53087;53088;53089;53090;53091;53092;53093;53094;53095;53096;53097;53098;53099;53100;53101;53102;53103;53104 44327;44328;44329;44330;44331;44332;44333;44334;44335;44336;44337;44338;44339;44340;44341;44342;44343;44344;44345;44346;44347;44348;44349;44350;44351;44352;44353;44354;44355;44356;44357;44358;44359;44360;44361;44362;44363;44364;44365;44366;44367;44368 44353 42 7017500000 181630000 433320000 SLLEGQEDHYNNLSASK MDIKSRLEQEIATYRSLLEGQEDHYNNLSA LEGQEDHYNNLSASKVL_____________ R S L S K V 1 0 2 1 0 1 2 1 1 0 3 1 0 0 0 3 0 0 1 0 0 0 17 0 1903.8912 CON__P08727;P08727 CON__P08727 382 398 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 8.9218E-152 282.62 By MS/MS By MS/MS 5 1 1 2 6 2 1 2 10 372870000 0 44932000 327930000 + 12213 51 12851 53105;53106;53107;53108;53109;53110;53111;53112;53113;53114;53115;53116 44369;44370;44371;44372;44373;44374 44374 6 0 11582000 46698000 SLLENDQLLSHGGQDLSADAFHR LKDCTYGTEIISKWKSLLENDQLLSHGGQD LSHGGQDLSADAFHRLIWEVWMPFVRNIVT K S L H R L 2 1 1 3 0 2 1 2 2 0 5 0 0 1 0 3 0 0 0 0 0 0 23 0 2522.215 Q9UBB9 Q9UBB9 457 479 TFIP11 Tuftelin-interacting protein 11 yes yes 3 4.8981E-12 108.96 By MS/MS 2 0 1 1 6986600 0 0 6986600 12214 2129 12852 53117 44375 44375 1 0 0 1578800 SLLESTYQR NNGATGGQLNTQNSRSLLESTYQRKAEQLM NTQNSRSLLESTYQRKAEQLMSDENCFKLM R S L Q R K 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 2 1 0 1 0 0 0 9 0 1095.556 Q96ST3 Q96ST3 1044 1052 SIN3A Paired amphipathic helix protein Sin3a yes yes 2 0.0019465 106.04 By MS/MS 2 0 1 1 3521800 0 0 3521800 12215 1836 12853 53118 44376 44376 1 0 0 795870 SLLFVNTLER LLLYALLKLSLIRGKSLLFVNTLERSYRLR LIRGKSLLFVNTLERSYRLRLFLEQFSIPT K S L E R S 0 1 1 0 0 0 1 0 0 0 3 0 0 1 0 1 1 0 0 1 0 0 10 0 1190.6659 Q9NY93 Q9NY93 261 270 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2 0.00027683 140.14 By MS/MS 4 0 1 1 8707400 0 8707400 0 12216 2095 12854 53119 44377 44377 1 0 2889700 0 SLLGPYLVFMASTINGYEGTGR VVIDEAAAIPLPLVKSLLGPYLVFMASTIN VFMASTINGYEGTGRSLSLKLIQQLRQQSA K S L G R S 1 1 1 0 0 0 1 4 0 1 3 0 1 1 1 2 2 0 2 1 0 0 22 0 2345.1726 Q9H0A0 Q9H0A0 400 421 NAT10 N-acetyltransferase 10 yes yes 2;3 1.2418E-21 157.14 By MS/MS 2 0 2 2 11211000 0 0 11211000 12217 1959 12855 53120;53121 44378;44379 44379 2 0 0 2533500 SLLIDFFR AGDDFDVTEDYRRLKSLLIDFFRGPTVSNI EDYRRLKSLLIDFFRGPTVSNIRLAGLEYV K S L F R G 0 1 0 1 0 0 0 0 0 1 2 0 0 2 0 1 0 0 0 0 0 0 8 0 1009.5597 Q9H7B2 Q9H7B2 161 168 RPF2 Ribosome production factor 2 homolog yes yes 2 0.0012844 117.93 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 64293000 0 5361600 58931000 12218 1991 12856 53122;53123;53124 44380;44381;44382 44380 3 0 1856000 8765200 SLLKPFCAALLK IARSFRHCTASTLPKSLLKPFCAALLKHIN LPKSLLKPFCAALLKHINDSAPEVRDAAFE K S L L K H 2 0 0 0 1 0 0 0 0 0 4 2 0 1 1 1 0 0 0 0 0 0 12 1 1359.7948 Q14008 Q14008 435 446 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.030809 58.172 By MS/MS 1.5 0.5 1 1 2 4943800 0 0 4943800 12219 1279 12857 53125;53126 44383 44383 1 0 0 1072800 SLLNKPK ______________________________ ______________________________ M S L P K S 0 0 1 0 0 0 0 0 0 0 2 2 0 0 1 1 0 0 0 0 0 0 7 1 798.49634 P62316 P62316 2 8 SNRPD2 Small nuclear ribonucleoprotein Sm D2 yes yes 2 0.03787 66.994 By MS/MS 9 0 1 1 40664000 0 40664000 0 12220 1023 12858 53127 44384 44384 1 0 32562000 0 SLLQALNEVK KLQGEFQLRLRQLEKSLLQALNEVKGRILD RQLEKSLLQALNEVKGRILDDDTIITTLEN K S L V K G 1 0 1 0 0 1 1 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1113.6394 Q14204 Q14204 3748 3757 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.018345 83.948 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 12732000 0 6138700 6593200 12221 1292 12859 53128;53129;53130 44385;44386 44385 2 0 3000500 1444100 SLLQAWGLILR INRLQVVASQWTLKKSLLQAWGLILRANIL TLKKSLLQAWGLILRANILEDVSLDELKNF K S L L R A 1 1 0 0 0 1 0 1 0 1 4 0 0 0 0 1 0 1 0 0 0 0 11 0 1268.7605 Q9NU22 Q9NU22 2860 2870 MDN1 Midasin yes yes 2 0.00032848 131.41 By MS/MS 1 0 1 1 3658500 0 0 3658500 12222 2056 12860 53131 44387 44387 1 0 0 788280 SLLSAEEAAK LSKVHFTAERSSYYKSLLSAEEAAKQKKEK SSYYKSLLSAEEAAKQKKEKVWAHYEEQPV K S L A K Q 3 0 0 0 0 0 2 0 0 0 2 1 0 0 0 2 0 0 0 0 0 0 10 0 1017.5342 Q7KZF4 Q7KZF4 642 651 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0044435 99.136 By MS/MS By MS/MS 2 0 2 1 1 59223000 0 33395000 25828000 12223 1518 12861 53132;53133 44388;44389 44388 2 0 15038000 5836700 SLLSLPEKEDKK FNEMLQRDFGVRIYKSLLSLPEKEDKKEKD IYKSLLSLPEKEDKKEKDKKSKKDERKDKK K S L K K E 0 0 0 1 0 0 2 0 0 0 3 3 0 0 1 2 0 0 0 0 0 0 12 2 1385.7766 Q8IX12 Q8IX12 789 800 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3 0.016008 72.731 By matching By MS/MS 1.5 0.5 1 1 1 1 8336900 0 1300500 7036400 12224 1579 12862 53134;53135 44390 44390 1 0 635690 1590100 SLLSQMLHYDPNKR QDFSKVVPPLDEDGRSLLSQMLHYDPNKRI RSLLSQMLHYDPNKRISAKAALAHPFFQDV R S L K R I 0 1 1 1 0 1 0 0 1 0 3 1 1 0 1 2 0 0 1 0 0 0 14 1 1700.8668 P24941 P24941 261 274 CDK2 Cyclin-dependent kinase 2 yes yes 4 0.025432 50.897 By MS/MS 6 0 1 1 1845700 0 0 1845700 12225 654 12863 53136 44391 44391 1 0 0 276140 SLLTIQEVDEFLLR RVFFEQSKSFPPAAKSLLTIQEVDEFLLRL KSLLTIQEVDEFLLRLSKLTKEDEQQQALQ K S L L R L 0 1 0 1 0 1 2 0 0 1 4 0 0 1 0 1 1 0 0 1 0 0 14 0 1674.9192 P49916 P49916 370 383 LIG3 DNA ligase 3 yes yes 2 2.1402E-47 227.94 By MS/MS 2 0 1 1 2924200 0 0 2924200 12226 874 12864 53137 44392 44392 1 0 0 660820 SLLTPLNLEIDPNAQR GVPAAPSITAVTVNKSLLTPLNLEIDPNAQ LLTPLNLEIDPNAQRVKKDEKEQIKTLNNK K S L Q R V 1 1 2 1 0 1 1 0 0 1 4 0 0 0 2 1 1 0 0 0 0 0 16 0 1792.9683 CON__Q6ISB0;CON__Q9NSB2;Q9NSB2 CON__Q6ISB0 145 160 KRT84 Keratin, type II cuticular Hb4 yes no 2 0.0018912 90.614 By MS/MS 5.5 0.5 1 1 2 4168800 4168800 0 0 + 12227 92 12865 53138;53139 44393 44393 1 3629100 0 0 SLLVIPNTLAVNAAQDSTDLVAK SMGSREQLAIAEFARSLLVIPNTLAVNAAQ LAVNAAQDSTDLVAKLRAFHNEAQVNPERK R S L A K L 4 0 2 2 0 1 0 0 0 1 4 1 0 0 1 2 2 0 0 3 0 0 23 0 2352.29 P17987 P17987 444 466 TCP1 T-complex protein 1 subunit alpha yes yes 2;3 3.4713E-20 149.59 By MS/MS 4 0 2 2 24183000 0 24183000 0 12228 591 12866 53140;53141 44394;44395 44395 2 0 8025500 0 SLLVNPEGPTLMR KEDGLAQQQTQLNLRSLLVNPEGPTLMRLN LRSLLVNPEGPTLMRLNSVQSSERPLFLVH R S L M R L 0 1 1 0 0 0 1 1 0 0 3 0 1 0 2 1 1 0 0 1 0 0 13 0 1425.765 P49327 P49327 2221 2233 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.00033936 128.03 By MS/MS By MS/MS 1 0 2 1 1 8193000 0 4351200 3841800 12229 853 12867 53142;53143 44396;44397 44397 2 0 2126800 827770 SLMDHTIPEV IFEHIIKRMAPSIMKSLMDHTIPEV_____ PSIMKSLMDHTIPEV_______________ K S L E V - 0 0 0 1 0 0 1 0 1 1 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1140.5485 O00560 O00560 289 298 SDCBP Syntenin-1 yes yes 2 0.033653 77.058 By matching By MS/MS By MS/MS 6 0 4 1 1 2 62903000 10818000 7917400 44167000 12230 128 12868;12869 53144;53145;53146;53147 44398;44399;44400 44399 3 14405000 2740700 6607800 SLMIQTLEAVK FTNMMMIGGNKVLARSLMIQTLEAVKRKQF VLARSLMIQTLEAVKRKQFEKYHAASAEEQ R S L V K R 1 0 0 0 0 1 1 0 0 1 2 1 1 0 0 1 1 0 0 1 0 0 11 0 1231.6846 Q9Y2R9 Q9Y2R9 109 119 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 2 0.0055877 99.815 By MS/MS By MS/MS 7 0 2 1 1 14937000 0 4506600 10431000 12231 2248 12870 53148;53149 44401;44402 44402 2 0 2587700 1850900 SLMSADNVR HESVQWCYDNFINYRSLMSADNVRQQLSRI NFINYRSLMSADNVRQQLSRIMDRFNLPRR R S L V R Q 1 1 1 1 0 0 0 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 9 0 991.47568 O43143 O43143 653 661 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0012418 109.01 By matching By MS/MS 2.5 0.5 1 1 1 1 36944000 0 12280000 24664000 12232 186 12871 53150;53151 44403 44403 1 0 5529600 4783700 SLNILTAFQK EKNKMSDGKKEELQKSLNILTAFQKKGAEK EELQKSLNILTAFQKKGAEKEEL_______ K S L Q K K 1 0 1 0 0 1 0 0 0 1 2 1 0 1 0 1 1 0 0 0 0 0 10 0 1133.6445 P30040 P30040 244 253 ERP29 Endoplasmic reticulum resident protein 29 yes yes 2 0.0025954 105.1 By matching By MS/MS 6.33 0.471 2 1 1 2 15713000 569050 0 15144000 12233 704 12872 53152;53153;53154 44404;44405 44405 2 757700 0 2512900 SLNNQFASFIDK PEIQKVKSREREQIKSLNNQFASFIDKVRF QIKSLNNQFASFIDKVRFLEQQNQVLQTKW K S L D K V 1 0 2 1 0 1 0 0 0 1 1 1 0 2 0 2 0 0 0 0 0 0 12 0 1382.683 P04264;CON__P04264 P04264 186 197 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.6936E-18 194.6 By MS/MS By MS/MS By MS/MS 5.48 2.92 3 3 3 3 3 2 3 3 3 3 10 9 10 21125000000 14989000000 921290000 5214100000 + 12234 413 12873 53155;53156;53157;53158;53159;53160;53161;53162;53163;53164;53165;53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183 44406;44407;44408;44409;44410;44411;44412;44413;44414;44415;44416;44417;44418;44419;44420;44421;44422;44423;44424;44425;44426;44427;44428;44429;44430;44431;44432;44433;44434;44435;44436;44437;44438;44439;44440;44441;44442;44443;44444;44445;44446;44447;44448;44449;44450;44451;44452;44453;44454;44455;44456;44457;44458;44459;44460;44461;44462 44406 57 14346000000 742110000 1469100000 SLNNQFASFIDKVR PEIQKVKSREREQIKSLNNQFASFIDKVRF KSLNNQFASFIDKVRFLEQQNQVLQTKWEL K S L V R F 1 1 2 1 0 1 0 0 0 1 1 1 0 2 0 2 0 0 0 1 0 0 14 1 1637.8526 P04264;CON__P04264 P04264 186 199 KRT1 Keratin, type II cytoskeletal 1 no no 2;3 1.6683E-44 224.42 By MS/MS By MS/MS By MS/MS 4.84 2.86 6 5 3 4 3 5 2 4 3 2 19 10 8 1294600000 1027900000 196650000 70040000 + 12235 413 12874 53184;53185;53186;53187;53188;53189;53190;53191;53192;53193;53194;53195;53196;53197;53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208;53209;53210;53211;53212;53213;53214;53215;53216;53217;53218;53219;53220 44463;44464;44465;44466;44467;44468;44469;44470;44471;44472;44473;44474;44475;44476;44477;44478;44479;44480;44481;44482;44483;44484;44485;44486;44487;44488;44489;44490;44491;44492;44493;44494;44495;44496;44497;44498;44499;44500 44480 38 948540000 79066000 14974000 SLNSDISYFGVGGK ESDHSGYVRPVPVPRSLNSDISYFGVGGKQ RSLNSDISYFGVGGKQAVFFVGQSARMISK R S L G K Q 0 0 1 1 0 0 0 3 0 1 1 1 0 1 0 3 0 0 1 1 0 0 14 0 1442.7042 A6NHR9 A6NHR9 227 240 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 6.1932E-05 159.09 By MS/MS By MS/MS 1 0 2 1 1 32634000 0 14430000 18204000 12236 15 12875 53221;53222 44501;44502 44501 2 0 7053000 3922400 SLNTDVLFGLLR LDHYSAIIMDEAHERSLNTDVLFGLLREVV HERSLNTDVLFGLLREVVARRSDLKLIVTS R S L L R E 0 1 1 1 0 0 0 1 0 0 4 0 0 1 0 1 1 0 0 1 0 0 12 0 1346.7558 Q92620 Q92620 658 669 DHX38 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 yes yes 2 6.3246E-08 166.33 By MS/MS 1.5 0.5 1 1 2 6169300 0 6169300 0 12237 1713 12876 53223;53224 44503 44503 1 0 2787200 0 SLPDFTELDLQGK SAQVQQYQQFLDASRSLPDFTELDLQGKVL SRSLPDFTELDLQGKVLPEGVGPGDIKAFQ R S L G K V 0 0 0 2 0 1 1 1 0 0 3 1 0 1 1 1 1 0 0 0 0 0 13 0 1461.7351 P22670 P22670 582 594 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.0023263 107.83 By MS/MS 2 0 1 1 5337700 0 0 5337700 12238 633 12877 53225 44504 44504 1 0 0 1206200 SLPEYLENMVIK RRSPHFFQPTNQQFKSLPEYLENMVIKLAK QFKSLPEYLENMVIKLAKELPPPSEEIKTG K S L I K L 0 0 1 0 0 0 2 0 0 1 2 1 1 0 1 1 0 0 1 1 0 0 12 0 1434.7429 Q96FV9 Q96FV9 517 528 THOC1 THO complex subunit 1 yes yes 2 0.019043 85.377 By MS/MS 2.5 0.5 1 1 2 11423000 0 0 11423000 12239 1783 12878 53226;53227 44505 44505 1 0 0 2306600 SLPGQNEDLVLTGYQVDK VRAGDNKYMHLKVFKSLPGQNEDLVLTGYQ GQNEDLVLTGYQVDKNKDDELTGF______ K S L D K N 0 0 1 2 0 2 1 2 0 0 3 1 0 0 1 1 1 0 1 2 0 0 18 0 1974.9898 P01040 P01040 72 89 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2;3 8.128E-32 206.32 By MS/MS By MS/MS By MS/MS 6.33 3 2 2 1 2 2 3 2 2 3 5 16 1 7 440700000 386580000 1480100 52641000 12240 374 12879 53228;53229;53230;53231;53232;53233;53234;53235;53236;53237;53238;53239;53240;53241;53242;53243;53244;53245;53246;53247;53248;53249;53250;53251 44506;44507;44508;44509;44510;44511;44512;44513;44514;44515;44516;44517;44518;44519;44520;44521;44522;44523;44524;44525;44526;44527 44514 22 365960000 7488100 27870000 SLPLNPK ______________________________ ______________________________ M S L P K P 0 0 1 0 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 0 7 0 767.45414 P62306 P62306 2 8 SNRPF Small nuclear ribonucleoprotein F yes yes 1 0.020049 56.091 By MS/MS By MS/MS 10 0 2 1 1 93435000 2083100 0 91352000 12241 1019 12880 53252;53253 44528;44529 44529 0 3794900 0 199800000 SLPLNPKPFLNGLTGK ______________________________ LPLNPKPFLNGLTGKPVMVKLKWGMEYKGY M S L G K P 0 0 2 0 0 0 0 2 0 0 4 2 0 1 3 1 1 0 0 0 0 0 16 1 1694.9719 P62306 P62306 2 17 SNRPF Small nuclear ribonucleoprotein F yes yes 2 1.8914E-05 113.77 By MS/MS By MS/MS 9.67 0.471 1 2 1 2 17622000 0 4706400 12916000 12242 1019 12881 53254;53255;53256 44530;44531;44532 44530 3 0 23811000 16062000 SLPLNPKPFLNGLTGKPVMVK ______________________________ KPFLNGLTGKPVMVKLKWGMEYKGYLVSVD M S L V K L 0 0 2 0 0 0 0 2 0 0 4 3 1 1 4 1 1 0 0 2 0 0 21 2 2249.297 P62306 P62306 2 22 SNRPF Small nuclear ribonucleoprotein F yes yes 3 5.1482E-08 100.53 By MS/MS By MS/MS 9.75 0.433 1 3 2 2 43751000 0 20724000 23027000 12243 1019 12882;12883 53257;53258;53259;53260 44533;44534;44535 44534 487 3 0 104850000 11913000 SLPNEEIVQK PIEGNQAGDAAASARSLPNEEIVQKIEEVL AASARSLPNEEIVQKIEEVLSGVLDTELRY R S L Q K I 0 0 1 0 0 1 2 0 0 1 1 1 0 0 1 1 0 0 0 1 0 0 10 0 1155.6136 P18583 P18583 55 64 SON Protein SON yes yes 2 0.052274 72.23 By MS/MS 1 0 1 1 10351000 0 10351000 0 12244 596 12884 53261 44536 44536 1 0 5059300 0 SLPSLVPLR CEAEDSALTKLPCYKSLPSLVPLRIAALNA KLPCYKSLPSLVPLRIAALNALAACNYLPQ K S L L R I 0 1 0 0 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 1 0 0 9 0 980.60187 Q9Y4A5 Q9Y4A5 1358 1366 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.033957 75.738 By MS/MS 1 0 1 1 0 0 0 0 12245 2285 12885 53262 44537 44537 1 0 0 0 SLPTTVPESPNYR ANKLFGAPEPSTIARSLPTTVPESPNYRNT ARSLPTTVPESPNYRNTRTPRTPRTPQLKD R S L Y R N 0 1 1 0 0 0 1 0 0 0 1 0 0 0 3 2 2 0 1 1 0 0 13 0 1459.7307 Q6PKG0 Q6PKG0 766 778 LARP1 La-related protein 1 yes yes 2 0.0053139 99.568 By MS/MS 2 0 1 1 13082000 0 13082000 0 12246 1497 12886 53263 44538 44538 1 0 5890800 0 SLQATESELR RERRATLDQVATLERSLQATESELRASQEK ATLERSLQATESELRASQEKISKMKANETK R S L L R A 1 1 0 0 0 1 2 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1132.5724 Q5TZA2 Q5TZA2 1608 1617 CROCC Rootletin yes yes 2 0.0057387 96.331 By MS/MS 1 0 1 1 3432300 0 3432300 0 12247 1458 12887 53264 44539 44539 1 0 1677600 0 SLQEEHVAVAQLR SKRASFAEKTAQLERSLQEEHVAVAQLREE ERSLQEEHVAVAQLREEAERRAQQQAEAER R S L L R E 2 1 0 0 0 2 2 0 1 0 2 0 0 0 0 1 0 0 0 2 0 0 13 0 1478.7841 Q15149 Q15149 1732 1744 PLEC Plectin yes yes 2;3 1.4274E-11 181.4 By matching By MS/MS By MS/MS 1 0 4 1 2 1 65590000 2919900 33767000 28904000 12248 1348 12888 53265;53266;53267;53268 44540;44541;44542 44542 3 2919900 16505000 6227700 SLQELFLAHILSPWGAEVK VVSEDFLQDVSASTKSLQELFLAHILSPWG LFLAHILSPWGAEVKAEPVEVVAPRGKSGA K S L V K A 2 0 0 0 0 1 2 1 1 1 4 1 0 1 1 2 0 1 0 1 0 0 19 0 2137.1572 P09874 P09874 468 486 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0 346.18 By MS/MS By MS/MS 2.14 0.99 2 3 1 1 1 6 1419900000 0 5415600 1414500000 12249 492 12889 53269;53270;53271;53272;53273;53274;53275 44543;44544;44545;44546;44547;44548 44548 6 0 2438700 313900000 SLQESRPFSVDFFR AYRSGGYKKARAVFKSLQESRPFSVDFFRK KSLQESRPFSVDFFRKMIQFEKEQESCNMA K S L F R K 0 2 0 1 0 1 1 0 0 0 1 0 0 3 1 3 0 0 0 1 0 0 14 1 1713.8475 Q9NYH9 Q9NYH9 499 512 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 3 0.0050778 73.386 By MS/MS 3 0 1 1 9216700 0 0 9216700 12250 2098 12890 53276 44549 44549 1 0 0 1787600 SLQETIQSLK HLLSSWEQIPKKVQKSLQETIQSLKLTNQE KKVQKSLQETIQSLKLTNQELLRKGSSNNQ K S L L K L 0 0 0 0 0 2 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1145.6292 Q6NUQ4 Q6NUQ4 435 444 TMEM214 Transmembrane protein 214 yes yes 2 0.00022151 122.13 By MS/MS By MS/MS 3 0 2 1 1 13168000 0 5103300 8064900 12251 1481 12891 53277;53278 44550;44551 44550 2 0 2175500 1564200 SLQFELIAAHLNPSDTEEWVR STLAMIYEDQGDMEKSLQFELIAAHLNPSD IAAHLNPSDTEEWVRLAEMSLEQDNIKQAI K S L V R L 2 1 1 1 0 1 3 0 1 1 3 0 0 1 1 2 1 1 0 1 0 0 21 0 2454.2179 Q9Y5Q9 Q9Y5Q9 202 222 GTF3C3 General transcription factor 3C polypeptide 3 yes yes 3 0.015128 42.612 By matching By MS/MS 1.5 0.5 1 1 1 1 3966900 0 1352200 2614700 12252 2301 12892 53279;53280 44552 44552 0 0 660940 590880 SLQQLAEER VATFNSIKELNERWRSLQQLAEERSQLLGS LNERWRSLQQLAEERSQLLGSAHEVQRFHR R S L E R S 1 1 0 0 0 2 2 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 9 0 1072.5513 Q13813 Q13813 1217 1225 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00073282 131.22 By matching By MS/MS By matching 3.5 3.1 2 1 1 1 1 1 2 3 68443000 5606400 50298000 12539000 12253 1268 12893 53281;53282;53283;53284;53285;53286 44553;44554 44553 2 5606400 24317000 6983300 SLQSLEASLHAMESTR EKRQQSEKTFMPKQRSLQSLEASLHAMEST LQSLEASLHAMESTRESLKAELGTDLLSQL R S L T R E 2 1 0 0 0 1 2 0 1 0 3 0 1 0 0 4 1 0 0 0 0 0 16 0 1758.857 Q9UQE7 Q9UQE7 759 774 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.00071623 84.14 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 213430000 2046600 105570000 105820000 12254 2222 12894 53287;53288;53289;53290;53291;53292 44555;44556;44557 44556 3 2046600 50372000 23379000 SLQSVAEER GKPVHHGVNQLKFARSLQSVAEERAGRHCG QLKFARSLQSVAEERAGRHCGALRVLNSYW R S L E R A 1 1 0 0 0 1 2 0 0 0 1 0 0 0 0 2 0 0 0 1 0 0 9 0 1017.5091 P61313 P61313 97 105 RPL15 60S ribosomal protein L15 yes yes 2 3.7589E-07 156.51 By MS/MS By MS/MS 5.7 2.69 1 2 1 1 1 2 2 4 6 401340000 0 47601000 353740000 12255 991 12895 53293;53294;53295;53296;53297;53298;53299;53300;53301;53302 44558;44559;44560;44561;44562;44563;44564;44565;44566 44566 9 0 29540000 70588000 SLRPDPNFDALISK NKECPTCRKKLVSKRSLRPDPNFDALISKI RSLRPDPNFDALISKIYPSREEYEAHQDRV R S L S K I 1 1 1 2 0 0 0 0 0 1 2 1 0 1 2 2 0 0 0 0 0 0 14 1 1571.8308 Q06587;Q99496 Q06587 96 109 RING1;RNF2 E3 ubiquitin-protein ligase RING1;E3 ubiquitin-protein ligase RING2 no no 2;3 0.011961 95.273 By MS/MS By MS/MS 4.5 0.5 2 2 1 3 50913000 0 8728600 42184000 12256 1171;1846 12896 53303;53304;53305;53306 44567;44568;44569 44567 3 0 2250000 6544600 SLSAIYLEK RSELELTLGKLEQVRSLSAIYLEKLKTISL KLEQVRSLSAIYLEKLKTISLVIRGTQGAE R S L E K L 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 0 0 1 0 0 0 9 0 1022.5648 Q15149 Q15149 1216 1224 PLEC Plectin yes yes 2 0.062176 67.993 By MS/MS 1 0 1 1 14220000 0 0 14220000 12257 1348 12897 53307 44570 44570 1 0 0 3063800 SLSDSESDDSK NSQKAGKEKDGTKRKSLSDSESDDSKSKKK TKRKSLSDSESDDSKSKKKRDAADKPRGFA K S L S K S 0 0 0 3 0 0 1 0 0 0 1 1 0 0 0 5 0 0 0 0 0 0 11 0 1168.4732 Q13185 Q13185 93 103 CBX3 Chromobox protein homolog 3 yes yes 2 3.9567E-06 114.5 By MS/MS 7 0 1 1 0 0 0 0 12258 1228 12898 53308 44571 44571 1 0 0 0 SLSEAPEDTSTR GEEENGEVHQAREDKSLSEAPEDTSTRGLN EDKSLSEAPEDTSTRGLNQDSTDSKTLQEQ K S L T R G 1 1 0 1 0 0 2 0 0 0 1 0 0 0 1 3 2 0 0 0 0 0 12 0 1291.5892 P41214 P41214 237 248 EIF2D Eukaryotic translation initiation factor 2D yes yes 2 0.022887 82.831 By MS/MS 3 0 1 1 4822100 0 0 4822100 12259 792 12899 53309 44572 44572 1 0 0 935270 SLSELLGPYGMK LTFNAEEYSDISEMRSLSELLGPYGMKFLS EMRSLSELLGPYGMKFLSESLMWHISSQVA R S L M K F 0 0 0 0 0 0 1 2 0 0 3 1 1 0 1 2 0 0 1 0 0 0 12 0 1293.6639 Q9Y2A7 Q9Y2A7 838 849 NCKAP1 Nck-associated protein 1 yes yes 2 0.0015867 111.61 By MS/MS 2 0 1 1 1514600 0 1514600 0 12260 2240 12900 53310 44573 44573 1 0 682040 0 SLSEYNNFK ILNDARDKTGSSAQKSLSEYNNFKSMVVSG GSSAQKSLSEYNNFKSMVVSGAKGSKINIS K S L F K S 0 0 2 0 0 0 1 0 0 0 1 1 0 1 0 2 0 0 1 0 0 0 9 0 1100.5138 P24928 P24928 759 767 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.0093301 89.296 By MS/MS 1 0 1 1 3036800 0 3036800 0 12261 653 12901 53311 44574 44574 1 0 1484300 0 SLSFLFEYIGEMGK EYRVPELNVQNGVLKSLSFLFEYIGEMGKD KSLSFLFEYIGEMGKDYIYAVTPLLEDALM K S L G K D 0 0 0 0 0 0 2 2 0 1 2 1 1 2 0 2 0 0 1 0 0 0 14 0 1619.7905 O75533 O75533 1150 1163 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.00059929 141.08 By MS/MS 2 0 1 1 3863500 0 0 3863500 12262 270 12902 53312 44575 44575 1 0 0 873070 SLSFVPGNDFEMSK DSLAKRCVCVSNTIRSLSFVPGNDFEMSKH RSLSFVPGNDFEMSKHPGLLLILGKLILLH R S L S K H 0 0 1 1 0 0 1 1 0 0 1 1 1 2 1 3 0 0 0 1 0 0 14 0 1556.7181 O14497 O14497 1990 2003 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 0.011611 78.692 By MS/MS 1 0 1 1 5563400 0 0 5563400 12263 134 12903 53313 44576 44576 1 0 0 1198700 SLSLLASR PPKLAQEILVEVLEKSLSLLASRYARAHPS LVEVLEKSLSLLASRYARAHPSRKRTPQLR K S L S R Y 1 1 0 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 8 0 845.49707 Q8IV33 Q8IV33 666 673 KIAA0825 Uncharacterized protein KIAA0825 yes yes 2 0.0041239 102.71 By MS/MS By MS/MS 5.44 3.56 2 1 1 1 1 1 2 4 5 357210000 267490000 0 89714000 12264 1568 12904 53314;53315;53316;53317;53318;53319;53320;53321;53322 44577;44578;44579;44580;44581;44582;44583;44584;44585 44582 9 298790000 0 61435000 SLSLSLADSGHLPDVHGFNSYGSHR PGAVLEPVARAPSVRSLSLSLADSGHLPDV HLPDVHGFNSYGSHRTLQRLSSGFDDIDLP R S L H R T 1 1 1 2 0 0 0 3 3 0 4 0 0 1 1 6 0 0 1 1 0 0 25 0 2652.2681 Q9Y446 Q9Y446 283 307 PKP3 Plakophilin-3 yes yes 4;5 0.0033481 41.087 By MS/MS 3 0 2 2 10593000 0 0 10593000 12265 2282 12905 53323;53324 44586;44587 44587 2 0 0 2054600 SLSPEQDIK SIVTALVDKIDMCKKSLSPEQDIKFSGHVS IDMCKKSLSPEQDIKFSGHVSWVGKTSMEV K S L I K F 0 0 0 1 0 1 1 0 0 1 1 1 0 0 1 2 0 0 0 0 0 0 9 0 1015.5186 Q9Y305 Q9Y305 158 166 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.031575 76.827 By MS/MS 5 0 1 1 12995000 0 12995000 0 12266 2256 12906 53325 44588 44588 1 0 3349800 0 SLSPFAITYLDR LKVWLGIMLPVLGIKSLSPFAITYLDRLLL GIKSLSPFAITYLDRLLLMHPNLTKGFGMI K S L D R L 1 1 0 1 0 0 0 0 0 1 2 0 0 1 1 2 1 0 1 0 0 0 12 0 1381.7242 Q6NUQ4 Q6NUQ4 289 300 TMEM214 Transmembrane protein 214 yes yes 2 0.014057 88.681 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 14630000 0 2436700 12193000 12267 1481 12907 53326;53327;53328 44589;44590 44590 2 0 1038800 2227200 SLSSAINASTGNYLLESVNK ILQAQAADKIHSSFRSLSSAINASTGNYLL INASTGNYLLESVNKLFGEKSASFREEYIR R S L N K L 2 0 3 0 0 0 1 1 0 1 3 1 0 0 0 5 1 0 1 1 0 0 20 0 2067.0484 P05120 P05120 109 128 SERPINB2 Plasminogen activator inhibitor 2 yes yes 2 6.7946E-05 82.651 By MS/MS By matching 1 0 2 1 1 2648400 1015700 1632700 0 12268 426 12908 53329;53330 44591 44591 1 1015700 798050 0 SLSSSLDDTEVKK ISTTASKTETPIVSKSLSSSLDDTEVKKVM SKSLSSSLDDTEVKKVMEECKRLQGEVQRL K S L K K V 0 0 0 2 0 0 1 0 0 0 2 2 0 0 0 4 1 0 0 1 0 0 13 1 1407.7093 O95292 O95292 156 168 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 2 0.0059724 104.82 By MS/MS 6.5 0.5 1 1 2 15289000 0 0 15289000 12269 317 12909 53331;53332 44592 44592 1 0 0 2594000 SLSYSPVER SRSPRKPIDSLRDSRSLSYSPVERRRPSPQ SLRDSRSLSYSPVERRRPSPQPSPRDQQSS R S L E R R 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 3 0 0 1 1 0 0 9 0 1036.5189 Q9UQ35 Q9UQ35 2690 2698 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.00060258 116.25 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 30718000 0 2652500 28065000 12270 2219 12910 53333;53334;53335 44593;44594;44595 44594 3 0 1130800 5137100 SLTANPELIDR IEEGIPAFTCEEYVKSLTANPELIDRLACL EYVKSLTANPELIDRLACLSEEGNEIESGK K S L D R L 1 1 1 1 0 0 1 0 0 1 2 0 0 0 1 1 1 0 0 0 0 0 11 0 1227.6459 Q9Y2L1 Q9Y2L1 200 210 DIS3 Exosome complex exonuclease RRP44 yes yes 2 0.0263 80.688 By MS/MS 2 0.816 1 1 1 3 35100000 0 0 35100000 12271 2242 12911 53336;53337;53338 44596 44596 1 0 0 7363800 SLTATGGNHVTAR GVLREVTTEFTVDARSLTATGGNHVTARVL ARSLTATGGNHVTARVLNPSGAKTDTYVTD R S L A R V 2 1 1 0 0 0 0 2 1 0 1 0 0 0 0 1 3 0 0 1 0 0 13 0 1283.6582 Q14315 Q14315 1279 1291 FLNC Filamin-C yes yes 2;3 6.4029E-05 156.58 By MS/MS 1 0 2 2 7524300 0 7524300 0 12272 1298 12912 53339;53340 44597;44598 44598 2 0 3677800 0 SLTNDWEDHLAVK NPDDITQEEYGEFYKSLTNDWEDHLAVKHF YKSLTNDWEDHLAVKHFSVEGQLEFRALLF K S L V K H 1 0 1 2 0 0 1 0 1 0 2 1 0 0 0 1 1 1 0 1 0 0 13 0 1526.7365 P07900;P08238 P08238 307 319 HSP90AA1;HSP90AB1 Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-beta no no 2;3 0.000172 149.94 By MS/MS By MS/MS By MS/MS 3.17 1.14 1 2 5 2 2 1 3 8 109990000 13032000 8407500 88554000 12273 466;469 12913 53341;53342;53343;53344;53345;53346;53347;53348;53349;53350;53351;53352 44599;44600;44601;44602;44603;44604 44604 6 15036000 3672800 16691000 SLTQTFATVEVGR AVSVHSNLNSEAVMKSLTQTFATVEVGRWN MKSLTQTFATVEVGRWNNNKKSPIKASDLT K S L G R W 1 1 0 0 0 1 1 1 0 0 1 0 0 1 0 1 3 0 0 2 0 0 13 0 1407.7358 Q5QJE6 Q5QJE6 362 374 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2 0.0031841 105.46 By MS/MS 3 0.816 1 1 1 3 7227600 0 7227600 0 12274 1442 12914 53353;53354;53355 44605 44605 1 0 2880000 0 SLTTSQYLMHEVAK YYFSAHALKLSRNGKSLTTSQYLMHEVAKQ KSLTTSQYLMHEVAKQLDLNPNRFPIFAAL K S L A K Q 1 0 0 0 0 1 1 0 1 0 2 1 1 0 0 2 2 0 1 1 0 0 14 0 1606.8025 Q9NZB2 Q9NZB2 211 224 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2;3 0.00050573 119.76 By MS/MS By MS/MS 2 0 2 1 1 12261000 0 3496500 8764200 12275 2101 12915 53356;53357 44606;44607 44606 2 0 1574500 1980500 SLTYLSILR SLVELGDLDPLASLKSLTYLSILRNPVTNK PLASLKSLTYLSILRNPVTNKKHYRLYVIY K S L L R N 0 1 0 0 0 0 0 0 0 1 3 0 0 0 0 2 1 0 1 0 0 0 9 0 1064.623 P09661 P09661 114 122 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 1.6507E-11 172.15 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 100410000 0 42318000 58094000 12276 491 12916 53358;53359;53360;53361 44608;44609;44610;44611 44611 4 0 23056000 10026000 SLVALALIFAIQK QGEMREMQQLSGGQKSLVALALIFAIQKCD QKSLVALALIFAIQKCDPAPFYLFDEIDQA K S L Q K C 3 0 0 0 0 1 0 0 0 2 3 1 0 1 0 1 0 0 0 1 0 0 13 0 1385.8646 Q9UQE7 Q9UQE7 1121 1133 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00059944 119.68 By MS/MS 1.5 0.5 1 1 2 4570700 0 0 4570700 12277 2222 12917 53362;53363 44612 44612 1 0 0 1020500 SLVALLVETQMK VKAKHLAAVEERKIKSLVALLVETQMKKLE KIKSLVALLVETQMKKLEIKLRHFEELETI K S L M K K 1 0 0 0 0 1 1 0 0 0 3 1 1 0 0 1 1 0 0 2 0 0 12 0 1330.753 Q8TAQ2;Q92922 Q8TAQ2 886 897 SMARCC2;SMARCC1 SWI/SNF complex subunit SMARCC2;SWI/SNF complex subunit SMARCC1 no no 2 3.0259E-05 150.61 By MS/MS 2.5 1.12 1 1 1 1 4 23670000 0 0 23670000 12278 1653;1731 12918 53364;53365;53366;53367 44613;44614 44613 2 0 0 5149600 SLVASLAEPDFVVTDFAK GIVSQVKVPKKISFKSLVASLAEPDFVVTD ASLAEPDFVVTDFAKFSRPAQLHIGFQALH K S L A K F 3 0 0 2 0 0 1 0 0 0 2 1 0 2 1 2 1 0 0 3 0 0 18 0 1907.988 P22314 P22314 305 322 UBA1 Ubiquitin-like modifier-activating enzyme 1 yes yes 2 0.00060617 94.122 By MS/MS 1.5 0.5 1 1 2 3390000 0 3390000 0 12279 630 12919 53368;53369 44615 44615 1 0 1541100 0 SLVATFIVK HIALLAPDQFAAPLKSLVATFIVKDLLMND FAAPLKSLVATFIVKDLLMNDRLPGKKTTK K S L V K D 1 0 0 0 0 0 0 0 0 1 1 1 0 1 0 1 1 0 0 2 0 0 9 0 976.59572 Q9NTI5 Q9NTI5 787 795 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.035345 75.738 By MS/MS 1 0 1 1 17344000 0 0 17344000 12280 2053 12920 53370 44616 44616 1 0 0 3736900 SLVEIADTVPK AVNDSCYQNDDSVLKSLVEIADTVPKYLRP SVLKSLVEIADTVPKYLRPHLEATLQLSLK K S L P K Y 1 0 0 1 0 0 1 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 11 0 1170.6496 O00410 O00410 239 249 IPO5 Importin-5 yes yes 2 0.05488 72.643 By MS/MS 2 0 1 1 2694300 0 2694300 0 12281 119 12921 53371 44617 44617 1 0 1213300 0 SLVEIIEHGLVDEQQK QIAILMGCAILPHLRSLVEIIEHGLVDEQQ LVEIIEHGLVDEQQKVRTISALAIAALAEA R S L Q K V 0 0 0 1 0 2 3 1 1 2 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1835.9629 O75533 O75533 685 700 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 1.9978E-90 249.69 By MS/MS 1.5 0.5 2 2 4 75175000 0 0 75175000 12282 270 12922 53372;53373;53374;53375 44618;44619;44620;44621 44620 4 0 0 16787000 SLVFPWFSPGGSGLR DTLKRFSVRYLRPARSLVFPWFSPGGSGLR SLVFPWFSPGGSGLRGLKLLEAKCQGDGVS R S L L R G 0 1 0 0 0 0 0 3 0 0 2 0 0 2 2 3 0 1 0 1 0 0 15 0 1605.8304 Q96RR1 Q96RR1 203 217 PEO1 Twinkle protein, mitochondrial yes yes 2 0.0022266 89.548 By MS/MS 3 0 1 1 3715200 0 3715200 0 12283 1830 12923 53376 44622 44622 1 0 1583800 0 SLVGLGGTK GGGGGGFGGGGFGSRSLVGLGGTKSISISV GGFGSRSLVGLGGTKSISISVAGGGGGFGA R S L T K S 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 830.48617 CON__P35908;CON__P35908v2;P35908 CON__P35908 62 70 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 1;2 0.0024705 103.83 By MS/MS By MS/MS By MS/MS 5.62 2.98 3 2 2 2 2 3 3 1 3 3 12 7 5 6326800000 5559000000 174030000 593770000 + 12284 65;66 12924 53377;53378;53379;53380;53381;53382;53383;53384;53385;53386;53387;53388;53389;53390;53391;53392;53393;53394;53395;53396;53397;53398;53399;53400 44623;44624;44625;44626;44627;44628;44629;44630;44631;44632;44633;44634;44635;44636;44637;44638;44639;44640;44641;44642;44643;44644 44644 21 6528000000 191290000 493180000 SLVHAGVPASYLLIPAASYVLPEVSK VVDSRPWLEGRHTLRSLVHAGVPASYLLIP LLIPAASYVLPEVSKVLLGAHALLANGSVM R S L S K V 4 0 0 0 0 0 1 1 1 1 4 1 0 0 3 4 0 0 2 4 0 0 26 0 2680.484 Q9UI10 Q9UI10 375 400 EIF2B4 Translation initiation factor eIF-2B subunit delta yes yes 3 7.532E-06 68.231 By MS/MS By matching 3.67 0.471 1 2 2 1 34445000 0 29505000 4939800 12285 2160 12925 53401;53402;53403 44645;44646 44646 2 0 9886800 806830 SLVHDLFQK EKELQKLTQEETNFKSLVHDLFQKVEEAKS EETNFKSLVHDLFQKVEEAKSSLAMNRSRG K S L Q K V 0 0 0 1 0 1 0 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 9 0 1085.5869 Q9NTJ3 Q9NTJ3 574 582 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.00068512 114.5 By MS/MS 2 0 1 1 6738000 0 0 6738000 12286 2054 12926 53404 44647 44647 1 0 0 1522700 SLVIPEKFQHILR ______________________________ ______________________________ M S L L R V 0 1 0 0 0 1 1 0 1 2 2 1 0 1 1 1 0 0 0 1 0 0 13 1 1578.9246 P62269 P62269 2 14 RPS18 40S ribosomal protein S18 yes yes 2;3 5.1143E-05 130.01 By MS/MS By MS/MS 7.4 0.8 1 1 3 4 1 73419000 0 67471000 5948900 12287 1014 12927 53405;53406;53407;53408;53409 44648;44649;44650;44651;44652;44653 44651 6 0 30634000 912020 SLVNLGGSK GGGGSFGAGGGFGSRSLVNLGGSKSISISV GGFGSRSLVNLGGSKSISISVARGGGRGSG R S L S K S 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 0 1 0 0 9 0 873.49198 P04264;CON__P04264 P04264 66 74 KRT1 Keratin, type II cytoskeletal 1 yes no 2 0.00052908 133.86 By MS/MS By MS/MS By MS/MS 5.23 2.83 3 3 2 3 3 3 3 2 1 3 10 8 8 16273000000 14045000000 593630000 1634500000 + 12288 413 12928 53410;53411;53412;53413;53414;53415;53416;53417;53418;53419;53420;53421;53422;53423;53424;53425;53426;53427;53428;53429;53430;53431;53432;53433;53434;53435 44654;44655;44656;44657;44658;44659;44660;44661;44662;44663;44664;44665;44666;44667;44668;44669;44670;44671;44672;44673;44674;44675;44676;44677;44678;44679 44662 26 16322000000 761570000 604060000 SLVNLGGSKSISISVAR GGGGSFGAGGGFGSRSLVNLGGSKSISISV VNLGGSKSISISVARGGGRGSGFGGGYGGG R S L A R G 1 1 1 0 0 0 0 2 0 2 2 1 0 0 0 5 0 0 0 2 0 0 17 1 1686.9628 P04264;CON__P04264 P04264 66 82 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 6.5286E-60 229.48 By MS/MS By matching By matching 5.47 3.15 2 3 1 1 1 2 2 3 2 12 1 4 349430000 334790000 751690 13891000 + 12289 413 12929 53436;53437;53438;53439;53440;53441;53442;53443;53444;53445;53446;53447;53448;53449;53450;53451;53452 44680;44681;44682;44683;44684;44685;44686;44687;44688;44689;44690;44691 44689 12 431520000 193760 3318600 SLVNLGGSKSISISVARGGGR GGGGSFGAGGGFGSRSLVNLGGSKSISISV GSKSISISVARGGGRGSGFGGGYGGGGFGG R S L G R G 1 2 1 0 0 0 0 5 0 2 2 1 0 0 0 5 0 0 0 2 0 0 21 2 2014.1283 P04264;CON__P04264 P04264 66 86 KRT1 Keratin, type II cytoskeletal 1 yes no 3;4 3.7889E-14 126.22 By MS/MS 8.4 2.24 1 2 2 5 39779000 39779000 0 0 + 12290 413 12930 53453;53454;53455;53456;53457 44692;44693;44694 44693 3 47780000 0 0 SLVPAAELLESR EEQEQKGRLCFEGLRSLVPAAELLESRVID GLRSLVPAAELLESRVIDRELYQQLQRGER R S L S R V 2 1 0 0 0 0 2 0 0 0 3 0 0 0 1 2 0 0 0 1 0 0 12 0 1283.7085 Q15149 Q15149 3116 3127 PLEC Plectin yes yes 2 0.011563 91.855 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 42730000 0 17066000 25664000 12291 1348 12931 53458;53459;53460 44695;44696;44697 44697 3 0 8341500 5529700 SLVQEMVGSFGK INVDDFKIIYIAPMRSLVQEMVGSFGKRLA PMRSLVQEMVGSFGKRLATYGITVAELTGD R S L G K R 0 0 0 0 0 1 1 2 0 0 1 1 1 1 0 2 0 0 0 2 0 0 12 0 1280.6435 O75643 O75643 546 557 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS By MS/MS 1.6 0.8 3 1 1 1 3 1 122600000 2080500 59279000 61243000 12292 277 12932 53461;53462;53463;53464;53465 44698;44699;44700;44701;44702 44699 4 2080500 28693000 13196000 SLVSGLIR IYCSRSKADYTSHLRSLVSGLIRLFNDSSP DYTSHLRSLVSGLIRLFNDSSPVVLEESWD R S L I R L 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 2 0 0 0 1 0 0 8 0 843.5178 Q92616 Q92616 2192 2199 GCN1L1 Translational activator GCN1 yes yes 2 0.0097857 94.006 By MS/MS 1.5 0.5 1 1 2 4336400 0 4336400 0 12293 1712 12933 53466;53467 44703 44703 1 0 2080700 0 SLVSKGTLVQTK YDVEKNNSRIKLGLKSLVSKGTLVQTKGTG GLKSLVSKGTLVQTKGTGASGSFKLNKKAA K S L T K G 0 0 0 0 0 1 0 1 0 0 2 2 0 0 0 2 2 0 0 2 0 0 12 1 1259.7449 P10412;Q02539;P16401;P16402;P16403 P16403 86 97 HIST1H1E;HIST1H1A;HIST1H1B;HIST1H1D;HIST1H1C Histone H1.4;Histone H1.1;Histone H1.5;Histone H1.3;Histone H1.2 no no 2;3 2.6326E-11 180.66 By MS/MS By MS/MS 5.75 1.23 1 1 2 4 4 4 8 311070000 0 78093000 232980000 12294 509;578;577 12934 53468;53469;53470;53471;53472;53473;53474;53475;53476;53477;53478;53479 44704;44705;44706;44707;44708;44709;44710;44711;44712 44711 9 0 27865000 36390000 SLVVSQFTTFLSLIEIPLK MHALTDLRKKNPNIKSLVVSQFTTFLSLIE SQFTTFLSLIEIPLKASGFVFTRLDGSMAQ K S L L K A 0 0 0 0 0 1 1 0 0 2 4 1 0 2 1 3 2 0 0 2 0 0 19 0 2134.2289 Q14527 Q14527 854 872 HLTF Helicase-like transcription factor yes yes 2 0.073961 44.616 By MS/MS 2 0 1 1 1252300 0 0 1252300 12295 1303 12935 53480 44713 44713 1 0 0 283000 SLWQQPSVGDILR PAAVEHHKTCRSLGRSLWQQPSVGDILRLL GRSLWQQPSVGDILRLLDRDRMMQTILHFP R S L L R L 0 1 0 1 0 2 0 1 0 1 2 0 0 0 1 2 0 1 0 1 0 0 13 0 1497.794 O60287 O60287 1583 1595 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0028443 106.4 By MS/MS 1 0 1 1 3882900 0 3882900 0 12296 224 12936 53481 44714 44714 1 0 1897900 0 SLYASSPGGVYATR RTYSLGSALRPSTSRSLYASSPGGVYATRS RSLYASSPGGVYATRSSAVRLRSSVPGVRL R S L T R S 2 1 0 0 0 0 0 2 0 0 1 0 0 0 1 3 1 0 2 1 0 0 14 0 1427.7045 P08670 P08670 51 64 VIM Vimentin yes yes 2;3 1.6445E-26 184.36 By MS/MS By MS/MS By MS/MS 4.32 2.05 2 2 2 5 3 2 2 1 1 8 10 4667400000 65498000 2216100000 2385800000 12297 476 12937 53482;53483;53484;53485;53486;53487;53488;53489;53490;53491;53492;53493;53494;53495;53496;53497;53498;53499;53500 44715;44716;44717;44718;44719;44720;44721;44722;44723;44724;44725;44726;44727;44728;44729;44730;44731;44732;44733;44734;44735;44736;44737;44738;44739 44727 25 51100000 735390000 398950000 SLYDEVAAQGEVVR QNISSNSSASILESKSLYDEVAAQGEVVRK KSLYDEVAAQGEVVRKLKAEKSPKAKINEA K S L V R K 2 1 0 1 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 3 0 0 14 0 1534.7627 P07814 P07814 825 838 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.010061 80.979 By MS/MS 1 0 1 1 1979200 0 1979200 0 12298 465 12938 53501 44740 44740 1 0 967400 0 SLYGLGGSK GGLGGACGGAGFGSRSLYGLGGSKRISIGG AGFGSRSLYGLGGSKRISIGGGSCAISGGY R S L S K R 0 0 0 0 0 0 0 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 880.46543 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 60 68 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.022712 80.438 By MS/MS By matching By matching 7.44 2.5 1 1 1 1 1 1 3 7 1 1 175440000 168420000 1318600 5699700 + 12299 68;47;37 12939 53502;53503;53504;53505;53506;53507;53508;53509;53510 44741;44742;44743 44741 3 209430000 6670800 12466000 SLYGLGGSKR GGLGGACGGAGFGSRSLYGLGGSKRISIGG GFGSRSLYGLGGSKRISIGGGSCAISGGYG R S L K R I 0 1 0 0 0 0 0 3 0 0 2 1 0 0 0 2 0 0 1 0 0 0 10 1 1036.5665 P02538;CON__P02538;CON__P04259;CON__P48668;P48668 CON__P48668 60 69 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 0.0013629 113.66 By MS/MS 9.5 0.5 1 1 2 75141000 75141000 0 0 + 12300 68;47;37 12940 53511;53512 44744;44745 44744 2 73769000 0 0 SLYNLGGSK VSLAGACGVGGYGSRSLYNLGGSKRISIST GGYGSRSLYNLGGSKRISISTSGGSFRNRF R S L S K R 0 0 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 937.4869 CON__P13647;P13647 CON__P13647 64 72 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.00091072 110.41 By MS/MS By MS/MS By MS/MS 6 3.26 2 1 1 1 2 1 1 1 3 7 3 3 465680000 422800000 10327000 32560000 + 12301 58 12941 53513;53514;53515;53516;53517;53518;53519;53520;53521;53522;53523;53524;53525 44746;44747;44748;44749;44750;44751;44752;44753;44754;44755;44756;44757;44758 44752 13 466430000 11161000 33407000 SLYNLGGSKR VSLAGACGVGGYGSRSLYNLGGSKRISIST GYGSRSLYNLGGSKRISISTSGGSFRNRFG R S L K R I 0 1 1 0 0 0 0 2 0 0 2 1 0 0 0 2 0 0 1 0 0 0 10 1 1093.588 CON__P13647;P13647 CON__P13647 64 73 KRT5 Keratin, type II cytoskeletal 5 no no 2 0.0011594 115.13 By MS/MS By matching 4.75 2.73 1 1 1 1 1 1 1 1 6 2 86141000 84295000 1845800 0 + 12302 58 12942 53526;53527;53528;53529;53530;53531;53532;53533 44759;44760;44761;44762 44759 4 90313000 4893400 0 SLYNLGSNK GACGFRSGAGSFGSRSLYNLGSNKSISISV GSFGSRSLYNLGSNKSISISVAAGSSRAGG R S L N K S 0 0 2 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 1 0 0 0 9 0 994.50836 CON__Q01546;Q01546 Q01546 57 65 KRT76 Keratin, type II cytoskeletal 2 oral no no 2 0.0024705 103.83 By MS/MS 1 0 1 1 17995000 17995000 0 0 + 12303 71;1135 12943 53534 44763 44763 1 17995000 0 0 SLYPLTFIQVK VGAALDILCPSGPIKSLYPLTFIQVKQHYG GPIKSLYPLTFIQVKQHYGFVLYRTTLPQD K S L V K Q 0 0 0 0 0 1 0 0 0 1 2 1 0 1 1 1 1 0 1 1 0 0 11 0 1307.7489 P16278 P16278 400 410 GLB1 Beta-galactosidase yes yes 2 0.019277 84.615 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 15684000 0 2856800 12827000 12304 576 12944 53535;53536;53537 44764;44765;44766 44766 3 0 948080 2235000 SLYPSLEDLKVDK ______________________________ ______________________________ M S L D K V 0 0 0 2 0 0 1 0 0 0 3 2 0 0 1 2 0 0 1 1 0 0 13 1 1505.7977 O00560 O00560 2 14 SDCBP Syntenin-1 yes yes 2 0.0037326 88.596 By MS/MS 6 0 1 1 4865300 0 0 4865300 12305 128 12945 53538 44767 44767 1 0 0 727910 SLYQSAGVAPESFEYIEAHGTGTK GVTFPSGDIQEQLIRSLYQSAGVAPESFEY PESFEYIEAHGTGTKVGDPQELNGITRALC R S L T K V 3 0 0 0 0 1 3 3 1 1 1 1 0 1 1 3 2 0 2 1 0 0 24 0 2541.2023 P49327 P49327 275 298 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 0.00026973 59.943 By MS/MS By matching 1.5 0.5 1 1 1 1 6592700 0 2978900 3613800 12306 853 12946 53539;53540 44768 44768 1 0 1456000 816650 SLYSDHELR QEEMASLLQQIEIERSLYSDHELRALDENQ QIEIERSLYSDHELRALDENQRLAKKKADL R S L L R A 0 1 0 1 0 0 1 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 9 0 1118.5356 Q9H2W6 Q9H2W6 82 90 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 0.0083398 91.069 By MS/MS By MS/MS 6.33 0.943 1 2 2 1 11680000 0 4100500 7579700 12307 1977 12947 53541;53542;53543 44769;44770 44770 2 0 1819700 1345000 SLYVAEYHSEPVEDEKP QLGTEIKPIPSNIDKSLYVAEYHSEPVEDE YVAEYHSEPVEDEKP_______________ K S L K P - 1 0 0 1 0 0 4 0 1 0 1 1 0 0 2 2 0 0 2 2 0 0 17 1 1990.916 P26196 P26196 467 483 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.0038453 86.114 By MS/MS 4 0 1 1 21432000 0 0 21432000 12308 665 12948 53544 44771 44771 1 0 0 3500500 SLYYYIQQDTK DMLKIRSEFKRKYGKSLYYYIQQDTKGDYQ KYGKSLYYYIQQDTKGDYQKALLYLCGGDD K S L T K G 0 0 0 1 0 2 0 0 0 1 1 1 0 0 0 1 1 0 3 0 0 0 11 0 1420.6874 P07355;A6NMY6 P07355 314 324 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 3.6971E-07 157.96 By MS/MS By MS/MS 8.17 1.67 2 1 1 2 4 2 96984000 25488000 0 71496000 12309 459 12949 53545;53546;53547;53548;53549;53550 44772;44773;44774;44775;44776 44772 5 28318000 0 13932000 SMAASGNLGHTPFVDEL ADIINAAKKFVSGQKSMAASGNLGHTPFVD AASGNLGHTPFVDEL_______________ K S M E L - 2 0 1 1 0 0 1 2 1 0 2 0 1 1 1 2 1 0 0 1 0 0 17 0 1744.809 P22695 P22695 437 453 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 2 8.2999E-06 123.92 By MS/MS 5 0 1 1 14047000 14047000 0 0 12310 635 12950 53551 44777 44777 1 11253000 0 0 SMDLSEYIIR KEFQEKHKKEVGKLKSMDLSEYIIRGDDEE VGKLKSMDLSEYIIRGDDEEWNEVLNKAGP K S M I R G 0 1 0 1 0 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 0 10 0 1225.6013 Q9H0A0 Q9H0A0 957 966 NAT10 N-acetyltransferase 10 yes yes 2 0.00035553 138.54 By MS/MS 2 0 1 1 15437000 0 0 15437000 12311 1959 12951 53552 44778 44778 1 0 0 3488400 SMDLSEYIIRGDDEEWNEVLNK KEFQEKHKKEVGKLKSMDLSEYIIRGDDEE IIRGDDEEWNEVLNKAGPNASIISLKSDKK K S M N K A 0 1 2 3 0 0 4 1 0 2 2 1 1 0 0 2 0 1 1 1 0 0 22 1 2654.217 Q9H0A0 Q9H0A0 957 978 NAT10 N-acetyltransferase 10 yes yes 3 0.048089 30.468 By MS/MS 2 0 1 1 8746800 0 0 8746800 12312 1959 12952 53553 44779 44779 1 0 0 1976600 SMDSYLNQSYGMDNHSGGGGGSR GMDRDYGHGSYGGQRSMDSYLNQSYGMDNH SYGMDNHSGGGGGSRFGPYESYDSRSSLGG R S M S R F 0 1 2 2 0 1 0 6 1 0 1 0 2 0 0 5 0 0 2 0 0 0 23 0 2375.9495 Q5BKZ1 Q5BKZ1 48 70 ZNF326 DBIRD complex subunit ZNF326 yes yes 3 2.9279E-05 75.797 By MS/MS 3 0 1 1 9007500 0 9007500 0 12313 1434 12953 53554 44780 44780 1 0 3839900 0 SMEAEMIQLQEELAAAER EEILAQAKENEKKLKSMEAEMIQLQEELAA AEMIQLQEELAAAERAKRQAQQERDELADE K S M E R A 4 1 0 0 0 2 5 0 0 1 2 0 2 0 0 1 0 0 0 0 0 0 18 0 2047.9554 P35579 P35579 1677 1694 MYH9 Myosin-9 yes yes 2;3 1.9181E-156 286.65 By MS/MS By MS/MS 1.25 0.433 6 2 6 2 67218000 0 34344000 32874000 12314 752 12954;12955 53555;53556;53557;53558;53559;53560;53561;53562 44781;44782;44783;44784;44785;44786;44787;44788 44788 359;360 8 0 16510000 7083300 SMEDFVTWVDSSK VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK TRSMEDFVTWVDSSKIKRHVLEYNEERDDF R S M S K I 0 0 0 2 0 0 1 0 0 0 0 1 1 1 0 3 1 1 0 2 0 0 13 0 1529.6708 Q9NV31 Q9NV31 153 165 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.0025859 107.11 By matching By MS/MS 7.33 0.471 2 1 1 2 24993000 0 434430 24558000 12315 2063 12956 53563;53564;53565 44789;44790 44789 2 0 249450 4007000 SMEFAPSEGAGTQDAAKPLEVLLLEK QADYEEVKKELNILKSMEFAPSEGAGTQDA TQDAAKPLEVLLLEKNRSLQSENAALRISN K S M E K N 4 0 0 1 0 1 4 2 0 0 4 2 1 1 2 2 1 0 0 1 0 0 26 1 2730.3786 P39880 P39880 363 388 CUX1 Homeobox protein cut-like 1 no no 3 0.00075546 46.307 By MS/MS 1.5 0.5 1 1 2 7438900 0 0 7438900 12316 781 12957 53566;53567 44791 44791 1 0 0 1628000 SMEMLVEHQAHDILT KGMKDRLEFWCTDVKSMEMLVEHQAHDILT SMEMLVEHQAHDILT_______________ K S M L T - 1 0 0 1 0 1 2 0 2 1 2 0 2 0 0 1 1 0 0 1 0 0 15 0 1752.8175 Q9UNM6 Q9UNM6 362 376 PSMD13 26S proteasome non-ATPase regulatory subunit 13 yes yes 2 0.0002828 130.15 By MS/MS 5 0 1 1 6615200 6615200 0 0 12317 2208 12958 53568 44792 44792 1 5299600 0 0 SMENYYQESGR DKPDVRFVIHHSMSKSMENYYQESGRAGRD SMSKSMENYYQESGRAGRDDMKADCILYYG K S M G R A 0 1 1 0 0 1 2 1 0 0 0 0 1 0 0 2 0 0 2 0 0 0 11 0 1362.551 P46063 P46063 394 404 RECQL ATP-dependent DNA helicase Q1 yes yes 2 7.2902E-14 182.39 By MS/MS By MS/MS 3 0 3 1 2 47256000 0 4663400 42593000 12318 823 12959;12960 53569;53570;53571 44793;44794;44795 44793 403 3 0 1988000 8261000 SMEVSTQLAR DKAFKHVFGKTLICRSMEVSTQLARAFTMD TLICRSMEVSTQLARAFTMDCITLEGDQVS R S M A R A 1 1 0 0 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 1 0 0 10 0 1120.5547 Q9UQE7 Q9UQE7 635 644 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 2.4914E-07 161.02 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 98956000 0 17409000 81547000 12319 2222 12961 53572;53573;53574;53575 44796;44797;44798;44799 44798 4 0 7839300 17947000 SMGGAAIAPPTSLVEK DSDEDEDYERERRKRSMGGAAIAPPTSLVE MGGAAIAPPTSLVEKDKELPRDFPYEEDSR R S M E K D 3 0 0 0 0 0 1 2 0 1 1 1 1 0 2 2 1 0 0 1 0 0 16 0 1527.7967 Q96I25 Q96I25 169 184 RBM17 Splicing factor 45 yes yes 2 0.0059997 78.324 By matching By MS/MS 4.33 0.471 2 1 1 2 63827000 55449000 8378400 0 12320 1798 12962 53576;53577;53578 44800 44800 1 43260000 2463900 0 SMLALLLGR ARDKDQRSLDIDTAKSMLALLLGRTWPLFS DIDTAKSMLALLLGRTWPLFSVFYQYLEQS K S M G R T 1 1 0 0 0 0 0 1 0 0 4 0 1 0 0 1 0 0 0 0 0 0 9 0 972.57902 Q9BTE7 Q9BTE7 164 172 DCUN1D5 DCN1-like protein 5 yes yes 2 0.0006003 116.3 By matching By MS/MS 7 0 2 1 1 6323300 0 266800 6056500 12321 1901 12963 53579;53580 44801 44801 1 0 153200 1074700 SMLESMLNR IAESPLWYSVIPMDRSMLESMLNRILAVRE VIPMDRSMLESMLNRILAVREIYEELGRPG R S M N R I 0 1 1 0 0 0 1 0 0 0 2 0 2 0 0 2 0 0 0 0 0 0 9 0 1079.5104 Q14202 Q14202 1342 1350 ZMYM3 Zinc finger MYM-type protein 3 yes yes 2 0.0066383 94.114 By MS/MS 2 0 1 1 1556000 0 1556000 0 12322 1290 12964 53581 44802 44802 1 0 700680 0 SMLEVNYPMENGIVR EIKDLMVGDEASELRSMLEVNYPMENGIVR SMLEVNYPMENGIVRNWDDMKHLWDYTFGP R S M V R N 0 1 2 0 0 0 2 1 0 1 1 0 2 0 1 1 0 0 1 2 0 0 15 0 1750.8382 P61160 P61160 66 80 ACTR2 Actin-related protein 2 yes yes 2 2.086E-07 168.3 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 21108000 0 8803000 12305000 12323 981 12965 53582;53583;53584 44803;44804;44805 44803 3 0 2488800 1716300 SMLLSAIGK SGRRYGLIGLNGIGKSMLLSAIGKREVPIP LNGIGKSMLLSAIGKREVPIPEHIDIYHLT K S M G K R 1 0 0 0 0 0 0 1 0 1 2 1 1 0 0 2 0 0 0 0 0 0 9 0 918.52084 Q9UG63 Q9UG63 125 133 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.04397 73.248 By MS/MS 3 0 1 1 6597400 0 6597400 0 12324 2142 12966 53585 44806 44806 1 0 2812500 0 SMLMEQDPDVAVTVR LSDPENNIKKLKELRSMLMEQDPDVAVTVR SMLMEQDPDVAVTVRKLVIVSLMELFKDIT R S M V R K 1 1 0 2 0 1 1 0 0 0 1 0 2 0 1 1 1 0 0 3 0 0 15 0 1689.8066 Q8WTT2 Q8WTT2 241 255 NOC3L Nucleolar complex protein 3 homolog yes yes 2 5.4553E-05 158.4 By MS/MS 2 0 1 1 22005000 0 0 22005000 12325 1670 12967 53586 44807 44807 1 0 0 4972600 SMMMSYAAER PYRLAPRPLMLASRRSMMMSYAAERSMMSS LASRRSMMMSYAAERSMMSSYERSMMSYER R S M E R S 2 1 0 0 0 0 1 0 0 0 0 0 3 0 0 2 0 0 1 0 0 0 10 0 1175.4773 P18583 P18583 998 1007 SON Protein SON yes yes 2 0.035401 76.605 By MS/MS 1 0 1 1 5737100 0 5737100 0 12326 596 12968 53587 44808 44808 1 0 2804200 0 SMMNLQTK ILCNHQRAPPKTFEKSMMNLQTKIDAKKEQ PPKTFEKSMMNLQTKIDAKKEQLADARRDL K S M T K I 0 0 1 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 0 0 0 0 8 0 951.45177 P11387 P11387 643 650 TOP1 DNA topoisomerase 1 yes yes 2 0.032544 77.282 By MS/MS 2 0 1 1 17337000 0 0 17337000 12327 523 12969 53588 44809 44809 1 0 0 3917700 SMMSAYER MMSYERSMMSPMAERSMMSAYERSMMSAYE MSPMAERSMMSAYERSMMSAYERSMMSPMA R S M E R S 1 1 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 0 1 0 0 0 8 0 973.39974 P18583 P18583 1032 1039 SON Protein SON yes no 2 0.0018003 110.81 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 82406000 4727100 29261000 48418000 12328 596 12970 53589;53590;53591;53592;53593 44810;44811 44810 2 4727100 14197000 10405000 SMMSMGADR MSAYERSMMSPMADRSMMSMGADRSMMSSY SPMADRSMMSMGADRSMMSSYSAADRSMMS R S M D R S 1 1 0 1 0 0 0 1 0 0 0 0 3 0 0 2 0 0 0 0 0 0 9 0 984.38271 P18583 P18583 1082 1090 SON Protein SON yes yes 2 0.00046492 119.17 By MS/MS 1 0 1 1 4470800 0 4470800 0 12329 596 12971 53594 44812 44812 1 0 2185200 0 SMMSPMADR MMSAYERSMMSAYERSMMSPMADRSMMSMG MSAYERSMMSPMADRSMMSMGADRSMMSSY R S M D R S 1 1 0 1 0 0 0 0 0 0 0 0 3 0 1 2 0 0 0 0 0 0 9 0 1024.414 P18583 P18583 1073 1081 SON Protein SON yes yes 2 0.0065334 94.302 By MS/MS By MS/MS 1 0 2 1 1 15755000 0 6222800 9532500 12330 596 12972 53595;53596 44813;44814 44814 2 0 3041600 2053900 SMMSPMAER SMMSSYERSMMSYERSMMSPMAERSMMSAY MMSYERSMMSPMAERSMMSAYERSMMSAYE R S M E R S 1 1 0 0 0 0 1 0 0 0 0 0 3 0 1 2 0 0 0 0 0 0 9 0 1038.4297 P18583 P18583 1023 1031 SON Protein SON yes no 2 0.0065334 94.302 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 39949000 0 15991000 23958000 12331 596 12973 53597;53598;53599 44815;44816 44816 2 0 7755300 5162100 SMMSSYER LASRRSMMMSYAAERSMMSSYERSMMSYER MSYAAERSMMSSYERSMMSYERSMMSPMAE R S M E R S 0 1 0 0 0 0 1 0 0 0 0 0 2 0 0 3 0 0 1 0 0 0 8 0 989.39465 P18583 P18583 1008 1015 SON Protein SON yes yes 2 0.0022767 109.01 By MS/MS By MS/MS 1 0 2 1 1 13049000 0 4406700 8642600 12332 596 12974 53600;53601 44817;44818 44818 2 0 2153900 1862200 SMMSSYSAADR SPMADRSMMSMGADRSMMSSYSAADRSMMS GADRSMMSSYSAADRSMMSSYSAADRSMMS R S M D R S 2 1 0 1 0 0 0 0 0 0 0 0 2 0 0 4 0 0 1 0 0 0 11 0 1204.4853 P18583 P18583 1091 1101 SON Protein SON yes no 2 4.9936E-07 155.84 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 54674000 0 26182000 28492000 12333 596 12975 53602;53603;53604 44819;44820 44820 2 0 12711000 6139000 SMMSSYTADR AADRSMMSSYSAADRSMMSSYTADRSMMSM SAADRSMMSSYTADRSMMSMAADSYTDSYT R S M D R S 1 1 0 1 0 0 0 0 0 0 0 0 2 0 0 3 1 0 1 0 0 0 10 0 1147.4638 P18583 P18583 1113 1122 SON Protein SON yes yes 2 0.034544 76.827 By MS/MS 1 0 1 1 17224000 0 0 17224000 12334 596 12976 53605 44821 44821 1 0 0 3711200 SMMSYER MSYAAERSMMSSYERSMMSYERSMMSPMAE SMMSSYERSMMSYERSMMSPMAERSMMSAY R S M E R S 0 1 0 0 0 0 1 0 0 0 0 0 2 0 0 2 0 0 1 0 0 0 7 0 902.36262 P18583 P18583 1016 1022 SON Protein SON yes yes 2 0.039993 83.377 By MS/MS By MS/MS 1 0 2 1 1 5510800 0 2414500 3096300 12335 596 12977 53606;53607 44822;44823 44822 2 0 1180200 667150 SMNINLWSEITELLYK SLQSIRSSLLLGFRRSMNINLWSEITELLY MNINLWSEITELLYKDGRYCQEPRGPTEAV R S M Y K D 0 0 2 0 0 0 2 0 0 2 3 1 1 0 0 2 1 1 1 0 0 0 16 0 1952.9918 P42704 P42704 551 566 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 6.1966E-05 142.91 By MS/MS 2.5 0.5 1 1 2 6296200 0 0 6296200 12336 808 12978 53608;53609 44824 44824 1 0 0 1394100 SMPEQTGEK CTLAIIDPGDSDIIRSMPEQTGEK______ DSDIIRSMPEQTGEK_______________ R S M E K - 0 0 0 0 0 1 2 1 0 0 0 1 1 0 1 1 1 0 0 0 0 0 9 0 1005.4437 P62888 P62888 107 115 RPL30 60S ribosomal protein L30 yes yes 2 0.0053104 96.492 By MS/MS 8.5 0.5 1 1 2 5460900 0 5460900 0 12337 1046 12979 53610;53611 44825;44826 44826 2 0 4340700 0 SMPIRKDDEVQVVR SSPLSKELRQKYNVRSMPIRKDDEVQVVRG RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY R S M V R G 0 2 0 2 0 1 1 0 0 1 0 1 1 0 1 1 0 0 0 3 0 0 14 2 1670.8774 P61254;Q9UNX3 P61254 46 59 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 3 0.050894 49.988 By MS/MS By matching 7 0 2 1 1 10306000 0 7511600 2794200 12338 989 12980 53612;53613 44827 44827 1 0 4313200 495810 SMQDVVEDYK DLLSAEQMRQNAEVRSMQDVVEDYKSKYED NAEVRSMQDVVEDYKSKYEDEINKRTGSEN R S M Y K S 0 0 0 2 0 1 1 0 0 0 0 1 1 0 0 1 0 0 1 2 0 0 10 0 1212.5333 CON__Q7Z794;Q7Z794 CON__Q7Z794 242 251 KRT77 Keratin, type II cytoskeletal 1b yes no 2 0.0037428 101.11 By MS/MS By matching By matching 6.5 3.95 2 1 1 2 4 1 1 28832000 25026000 1159500 2646300 + 12339 95 12981 53614;53615;53616;53617;53618;53619 44828;44829;44830 44828 1 21202000 566760 5787800 SMQGFPFYDKPMR FVIFKEVSSATNALRSMQGFPFYDKPMRIQ LRSMQGFPFYDKPMRIQYAKTDSDIIAKMK R S M M R I 0 1 0 1 0 1 0 1 0 0 0 1 2 2 2 1 0 0 1 0 0 0 13 1 1602.7323 P09012 P09012 71 83 SNRPA U1 small nuclear ribonucleoprotein A yes yes 2;3 0.0013914 130.98 By MS/MS By MS/MS 6.11 0.567 1 6 2 3 6 157460000 0 58211000 99246000 12340 481 12982;12983 53620;53621;53622;53623;53624;53625;53626;53627;53628 44831;44832;44833;44834;44835;44836;44837;44838;44839 44839 196 9 0 20151000 15000000 SMQVVPLDK QEQMCNVGVSMGLTRSMQVVPLDKQITIID SMGLTRSMQVVPLDKQITIIDSPSFIVSPL R S M D K Q 0 0 0 1 0 1 0 0 0 0 1 1 1 0 1 1 0 0 0 2 0 0 9 0 1015.5372 Q9BVP2 Q9BVP2 291 299 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.055214 68.846 By MS/MS 3 0 1 1 0 0 0 0 12341 1917 12984 53629 44840 44840 1 0 0 0 SMSFQGIR IEPHTGLLLLSVQKRSMSFQGIRQPVTVTE LLSVQKRSMSFQGIRQPVTVTELVDSGILR R S M I R Q 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 2 0 0 0 0 0 0 8 0 924.44874 P15924 P15924 2207 2214 DSP Desmoplakin yes yes 2 0.023759 81.381 By MS/MS 1 0 1 1 5697500 0 5697500 0 12342 572 12985 53630 44841 44841 1 0 2784900 0 SMSGHPEAAQMVR KGPAEDMSSKLNQARSMSGHPEAAQMVRRE ARSMSGHPEAAQMVRREFQLDLDEIENDNG R S M V R R 2 1 0 0 0 1 1 1 1 0 0 0 2 0 1 2 0 0 0 1 0 0 13 0 1399.6337 Q14008 Q14008 1469 1481 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 2.006E-05 161.67 By matching By MS/MS By MS/MS 1.5 0.764 4 1 1 1 1 4 103220000 2445500 12731000 88040000 12343 1279 12986 53631;53632;53633;53634;53635;53636 44842;44843;44844 44844 3 2445500 6222500 18952000 SMTEAEQQQLIDDHFLFDKPVSPLLLASGMAR SSLDGDLAGRYYALKSMTEAEQQQLIDDHF DKPVSPLLLASGMARDWPDARGIWHNDNKT K S M A R D 3 1 0 3 0 3 2 1 1 1 5 1 2 2 2 3 1 0 0 1 0 0 32 1 3586.78 P12277 P12277 178 209 CKB Creatine kinase B-type yes yes 4 8.4573E-20 94.155 By MS/MS 5.5 0.5 1 1 2 8436300 0 0 8436300 12344 538 12987 53637;53638 44845 44845 1 0 0 1202600 SMVEDITGLR PKTKLKISYKDAINRSMVEDITGLRLLEAA DAINRSMVEDITGLRLLEAASVSSKGLPSP R S M L R L 0 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 1 0 0 1 0 0 10 0 1119.5594 P15924 P15924 2792 2801 DSP Desmoplakin yes yes 2 4.75E-05 150.05 By MS/MS 1 0 1 1 15498000 0 0 15498000 12345 572 12988 53639 44846 44846 1 0 0 3339400 SMVEEGTGLR PKTKLKISYKDALDRSMVEEGTGLRLLEAA DALDRSMVEEGTGLRLLEAAAQSTKGYYSP R S M L R L 0 1 0 0 0 0 2 2 0 0 1 0 1 0 0 1 1 0 0 1 0 0 10 0 1077.5125 Q15149 Q15149 4590 4599 PLEC Plectin yes yes 2 0.00061762 133.23 By MS/MS By MS/MS 1.67 0.943 2 1 1 2 26592000 0 10888000 15704000 12346 1348 12989 53640;53641;53642 44847;44848;44849 44848 3 0 5321800 3284300 SMVPVQVQLDVPVVK RDNNGVIGLLEPMKKSMVPVQVQLDVPVVK SMVPVQVQLDVPVVKVASGNDHLVMLTADG K S M V K V 0 0 0 1 0 2 0 0 0 0 1 1 1 0 2 1 0 0 0 6 0 0 15 0 1636.9222 P18754 P18754 162 176 RCC1 Regulator of chromosome condensation yes yes 2 0.0003443 118.48 By MS/MS By MS/MS By MS/MS 4.13 1.54 1 2 2 2 5 3 1 6 8 473110000 7075100 241570000 224460000 12347 599 12990;12991 53643;53644;53645;53646;53647;53648;53649;53650;53651;53652;53653;53654;53655;53656;53657 44850;44851;44852;44853;44854;44855;44856;44857;44858;44859;44860;44861;44862;44863 44859 263 14 5668000 64558000 33550000 SMVQFIGR AATLITHPFHVITLRSMVQFIGRESKYCGL FHVITLRSMVQFIGRESKYCGLCDSIITIY R S M G R E 0 1 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 0 0 1 0 0 8 0 936.48512 Q9Y6C9 Q9Y6C9 148 155 MTCH2 Mitochondrial carrier homolog 2 yes yes 2 0.023435 81.635 By MS/MS 6 0 1 1 11585000 0 0 11585000 12348 2311 12992 53658 44864 44864 1 0 0 1733200 SMVTEEFNGSDWEK GFGIAPHCLDEGTVRSMVTEEFNGSDWEKA RSMVTEEFNGSDWEKAMKEHKTIKNMSKE_ R S M E K A 0 0 1 1 0 0 3 1 0 0 0 1 1 1 0 2 1 1 0 1 0 0 14 0 1657.693 Q7Z7K6 Q7Z7K6 248 261 CENPV Centromere protein V yes yes 2 7.2974E-18 194.5 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 31267000 0 2884000 28383000 12349 1538 12993 53659;53660;53661 44865;44866;44867 44865 3 0 998330 4184400 SMYEEEINETR ENRCQSLTEDLEFRKSMYEEEINETRRKHE EFRKSMYEEEINETRRKHETRLVEVDSGRQ K S M T R R 0 1 1 0 0 0 4 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 11 0 1399.5926 P20700 P20700 210 220 LMNB1 Lamin-B1 yes yes 2 4.1995E-10 172.59 By MS/MS By MS/MS By MS/MS 3.36 1.43 1 2 4 1 2 1 1 2 8 289320000 13762000 19819000 255740000 12350 619 12994;12995 53662;53663;53664;53665;53666;53667;53668;53669;53670;53671;53672 44868;44869;44870;44871;44872;44873;44874 44872 268 7 15878000 8494800 47599000 SMYEEEINETRR ENRCQSLTEDLEFRKSMYEEEINETRRKHE FRKSMYEEEINETRRKHETRLVEVDSGRQI K S M R R K 0 2 1 0 0 0 4 0 0 1 0 0 1 0 0 1 1 0 1 0 0 0 12 1 1555.6937 P20700 P20700 210 221 LMNB1 Lamin-B1 yes yes 2;3 1.9239E-17 187.1 By MS/MS By MS/MS 3 1.2 2 2 6 2 2 2 12 253490000 0 12927000 240560000 12351 619 12996;12997 53673;53674;53675;53676;53677;53678;53679;53680;53681;53682;53683;53684;53685;53686 44875;44876;44877;44878;44879;44880;44881;44882 44880 268 8 0 5510900 44834000 SNAHYNLQNAFNLAEQHLGLTK HKHRPDLIDFDKLKKSNAHYNLQNAFNLAE QNAFNLAEQHLGLTKLLDPEDISVDHPDEK K S N T K L 3 0 4 0 0 2 1 1 2 0 4 1 0 1 0 1 1 0 1 0 0 0 22 0 2482.2353 Q01082 Q01082 228 249 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 2.201E-20 145.55 By MS/MS 1.5 0.5 1 1 2 20682000 0 0 20682000 12352 1128 12998 53687;53688 44883 44883 1 0 0 4481200 SNASTLESHETEEPAAK FTVAMDNLKADTSLKSNASTLESHETEEPA ASTLESHETEEPAAKKRKCPESDS______ K S N A K K 3 0 1 0 0 0 4 0 1 0 1 1 0 0 1 3 2 0 0 0 0 0 17 0 1799.8174 Q9UJA5 Q9UJA5 472 488 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 3 3.2662E-06 82.349 By MS/MS 4 0 1 1 0 0 0 0 12353 2168 12999 53689 44884 44884 1 0 0 0 SNDPVATAFAEMLK ETNTHVKCFSLAATRSNDPVATAFAEMLKV RSNDPVATAFAEMLKVNKTLKSLNVESNFI R S N L K V 3 0 1 1 0 0 1 0 0 0 1 1 1 1 1 1 1 0 0 1 0 0 14 0 1492.7232 Q9NYL9 Q9NYL9 239 252 TMOD3 Tropomodulin-3 yes yes 2 0.0015961 105.65 By MS/MS By MS/MS 5 0 2 1 1 6989900 0 4979500 2010400 12354 2099 13000 53690;53691 44885;44886 44886 2 0 1283600 280410 SNEDQSMGNWQIK EEVDEEGKFVRLRNKSNEDQSMGNWQIKRQ NKSNEDQSMGNWQIKRQNGDDPLLTYRFPP K S N I K R 0 0 2 1 0 2 1 1 0 1 0 1 1 0 0 2 0 1 0 0 0 0 13 0 1535.6675 P02545 P02545 458 470 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 4.1501E-58 236.33 By MS/MS By MS/MS By MS/MS 3.46 1.39 1 1 6 3 1 1 2 4 7 443920000 10160000 51864000 381900000 12355 387 13001;13002 53692;53693;53694;53695;53696;53697;53698;53699;53700;53701;53702;53703;53704 44887;44888;44889;44890;44891;44892;44893;44894;44895;44896;44897 44889 125 11 11722000 20604000 74249000 SNEDQSMGNWQIKR EEVDEEGKFVRLRNKSNEDQSMGNWQIKRQ KSNEDQSMGNWQIKRQNGDDPLLTYRFPPK K S N K R Q 0 1 2 1 0 2 1 1 0 1 0 1 1 0 0 2 0 1 0 0 0 0 14 1 1691.7686 P02545 P02545 458 471 LMNA Prelamin-A/C;Lamin-A/C yes yes 3 0.00069559 91.62 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 24988000 0 18949000 6038700 12356 387 13003 53705;53706;53707;53708 44898;44899;44900 44899 3 0 7235300 1171200 SNEILTAIIQGMR GYICQDIDPEQLQDKSNEILTAIIQGMRKE DKSNEILTAIIQGMRKEEPSNNVKLAATNA K S N M R K 1 1 1 0 0 1 1 1 0 3 1 0 1 0 0 1 1 0 0 0 0 0 13 0 1444.7708 Q14974 Q14974 170 182 KPNB1 Importin subunit beta-1 yes yes 2 1.8472E-24 196.27 By MS/MS By MS/MS 3 0.816 1 1 1 1 2 26035000 0 3858800 22177000 12357 1325 13004 53709;53710;53711 44901;44902 44901 2 0 1737700 4216900 SNFSNSADDIK ENNKPREKSESNKRKSNFSNSADDIKSKKK NKRKSNFSNSADDIKSKKKREQSNDIARGF K S N I K S 1 0 2 2 0 0 0 0 0 1 0 1 0 1 0 3 0 0 0 0 0 0 11 0 1196.5309 P45973 P45973 92 102 CBX5 Chromobox protein homolog 5 yes yes 2 0.00011668 140.45 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 215550000 0 10714000 204830000 12358 820 13005 53712;53713;53714 44903;44904;44905 44905 3 0 6152200 35883000 SNIDALLSR SSELQAIKTELTQIKSNIDALLSRLEQIAA ELTQIKSNIDALLSRLEQIAAEQKANPDGK K S N S R L 1 1 1 1 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 9 0 987.53491 Q9UKM9 Q9UKM9 199 207 RALY RNA-binding protein Raly yes yes 2 2.1063E-11 171.46 By MS/MS By MS/MS By MS/MS 4.88 1.05 1 2 2 3 1 4 3 307560000 23646000 148530000 135390000 12359 2181 13006 53715;53716;53717;53718;53719;53720;53721;53722 44906;44907;44908;44909;44910 44909 5 31485000 50583000 19920000 SNIHVVNEWIANDISSTK AQKFIYESDVLWKHRSNIHVVNEWIANDIS HVVNEWIANDISSTKIRRALRRGQSIRYLV R S N T K I 1 0 3 1 0 0 1 0 1 3 0 1 0 0 0 3 1 1 0 2 0 0 18 0 2026.012 Q9HAN9 Q9HAN9 208 225 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes yes 2;3 1.4208E-08 130.06 By MS/MS 6 0 2 2 10401000 0 0 10401000 12360 2002 13007 53723;53724 44911;44912 44912 2 0 0 1556200 SNLAPVILQLK AFDKLPQSTVPEMQRSNLAPVILQLKALGI EMQRSNLAPVILQLKALGIDNVLRFHFMSP R S N L K A 1 0 1 0 0 1 0 0 0 1 3 1 0 0 1 1 0 0 0 1 0 0 11 0 1194.7336 Q9H5Z1 Q9H5Z1 425 435 DHX35 Probable ATP-dependent RNA helicase DHX35 yes yes 2 0.06871 69.338 By MS/MS 3 0 1 1 3919800 0 3919800 0 12361 1985 13008 53725 44913 44913 1 0 1671000 0 SNLAYDIVQLPTGLTGIK FHGRAFSDPFVEAEKSNLAYDIVQLPTGLT AYDIVQLPTGLTGIKVTYMEEERNFTTEQV K S N I K V 1 0 1 1 0 1 0 2 0 2 3 1 0 0 1 1 2 0 1 1 0 0 18 0 1902.0462 P34932 P34932 85 102 HSPA4 Heat shock 70 kDa protein 4 yes yes 2 1.7352E-08 146.84 By matching By MS/MS By MS/MS 2.6 0.8 3 1 1 1 3 1 16271000 534480 10670000 5066400 12362 735 13009 53726;53727;53728;53729;53730 44914;44915 44914 2 643990 4527600 1144900 SNLDEDIIAEENIVSR LRRQHARASHLGLARSNLDEDIIAEENIVS NLDEDIIAEENIVSRSEFPESWLWNVEDLK R S N S R S 1 1 2 2 0 0 3 0 0 3 1 0 0 0 0 2 0 0 0 1 0 0 16 0 1815.885 P01024 P01024 749 764 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 1.2237E-12 179.46 By MS/MS 9 0 1 1 2553400 2553400 0 0 12363 371 13010 53731 44916 44916 1 1433300 0 0 SNLELFKEELK TKKPPLKKGEKEKKKSNLELFKEELKQIQE EKKKSNLELFKEELKQIQEERDERHKTKGR K S N L K Q 0 0 1 0 0 0 3 0 0 0 3 2 0 1 0 1 0 0 0 0 0 0 11 1 1348.7238 O15042 O15042 202 212 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2 0.0029818 120.65 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 14060000 0 4011400 10048000 12364 163 13011 53732;53733;53734 44917;44918 44917 2 0 1806400 2191400 SNLEPLFESYITNLR LETKWSFLQEQKCIRSNLEPLFESYITNLR SNLEPLFESYITNLRRQLEVLVSDQARLQA R S N L R R 0 1 2 0 0 0 2 0 0 1 3 0 0 1 1 2 1 0 1 0 0 0 15 0 1794.9152 CON__Q6ISB0;CON__Q9NSB2;Q9NSB2 CON__Q6ISB0 208 222 KRT84 Keratin, type II cuticular Hb4 yes no 2 0.035523 63.76 By MS/MS 4 0 1 1 4647100 0 0 4647100 + 12365 92 13012 53735 44919 44919 1 0 0 759030 SNLGSVVLQLK YKTEMQDNTYPEILRSNLGSVVLQLKKLGI EILRSNLGSVVLQLKKLGIDDLVHFDFMDP R S N L K K 0 0 1 0 0 1 0 1 0 0 3 1 0 0 0 2 0 0 0 2 0 0 11 0 1156.6816 O43143 O43143 505 515 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0013387 110.88 By matching By MS/MS By MS/MS 3.6 2.37 2 2 2 1 1 1 1 1 5 4 115770000 586200 52530000 62655000 12366 186 13013 53736;53737;53738;53739;53740;53741;53742;53743;53744;53745 44920;44921;44922;44923;44924;44925 44920 6 586200 23230000 12342000 SNLGSVVLQLKK YKTEMQDNTYPEILRSNLGSVVLQLKKLGI ILRSNLGSVVLQLKKLGIDDLVHFDFMDPP R S N K K L 0 0 1 0 0 1 0 1 0 0 3 2 0 0 0 2 0 0 0 2 0 0 12 1 1284.7765 O43143 O43143 505 516 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 3 0.045861 46.159 By MS/MS 2 0 1 1 3389200 0 3389200 0 12367 186 13014 53746 44926 44926 1 0 1526200 0 SNLHAMIK EGYQNTIVAGSLITKSNLHAMIKAEESSKQ AGSLITKSNLHAMIKAEESSKQEECTTTST K S N I K A 1 0 1 0 0 0 0 0 1 1 1 1 1 0 0 1 0 0 0 0 0 0 8 0 912.48512 O75400 O75400 234 241 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 0.062335 69.905 By matching By MS/MS 2 0 2 1 1 4552900 1222800 0 3330100 12368 258 13015 53747;53748 44927 44927 1 1473300 0 752540 SNLLWDTGVFR SYTWLCYEVKIKRGRSNLLWDTGVFRGPVL KRGRSNLLWDTGVFRGPVLPKRQSNHRQEV R S N F R G 0 1 1 1 0 0 0 1 0 0 2 0 0 1 0 1 1 1 0 1 0 0 11 0 1306.667 Q96AK3 Q96AK3 46 56 APOBEC3D DNA dC->dU-editing enzyme APOBEC-3D no no 2 1.6531E-09 166.66 By MS/MS By MS/MS 5 1.22 1 1 2 1 3 23665000 0 6098000 17567000 12369 1752 13016 53749;53750;53751;53752 44928;44929 44928 2 0 2110900 2766600 SNLMDAISFVLGEK FQRFTAIIGPNGSGKSNLMDAISFVLGEKT KSNLMDAISFVLGEKTSNLRVKTLRDLIHG K S N E K T 1 0 1 1 0 0 1 1 0 1 2 1 1 1 0 2 0 0 0 1 0 0 14 0 1522.7701 Q14683 Q14683 39 52 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2;3 0.00039598 127.37 By MS/MS By MS/MS 1.88 0.781 3 3 2 2 6 125080000 0 4774600 120310000 12370 1312 13017 53753;53754;53755;53756;53757;53758;53759;53760 44930;44931;44932;44933;44934;44935 44934 6 0 2178400 26612000 SNLNSLDEQEGVK SPGDEVWGVVWKMNKSNLNSLDEQEGVKSG NKSNLNSLDEQEGVKSGMYVVIEVKVATQE K S N V K S 0 0 2 1 0 1 2 1 0 0 2 1 0 0 0 2 0 0 0 1 0 0 13 0 1431.6842 O75223 O75223 89 101 GGCT Gamma-glutamylcyclotransferase yes yes 2 4.8534E-26 206.36 By MS/MS By matching 4.67 2.62 1 1 1 2 1 41771000 30890000 0 10881000 12371 248 13018 53761;53762;53763 44936;44937 44936 2 34486000 0 1930700 SNLVISDPIPGAKPLPVPPELAPFVGR ASNGATLPSALSASKSNLVISDPIPGAKPL KPLPVPPELAPFVGRMSAQESTPIMNGVTG K S N G R M 2 1 1 1 0 0 1 2 0 2 3 1 0 1 7 2 0 0 0 3 0 0 27 1 2779.5636 Q9UQB8 Q9UQB8 263 289 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes yes 3 5.2179E-08 72.881 By MS/MS 4 0 1 1 8960000 0 8960000 0 12372 2221 13019 53764 44938;44939 44939 2 0 2973500 0 SNMDNMFESYINNLR LETKWSLLQQQKTARSNMDNMFESYINNLR SNMDNMFESYINNLRRQLETLGQEKLKLEA R S N L R R 0 1 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 15 0 1846.7978 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 134 148 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 0 377.79 By MS/MS By MS/MS By MS/MS 4.05 1.4 1 4 10 15 6 4 3 2 16 25 1445500000 10920000 120570000 1314000000 + 12373 49 13020;13021;13022 53765;53766;53767;53768;53769;53770;53771;53772;53773;53774;53775;53776;53777;53778;53779;53780;53781;53782;53783;53784;53785;53786;53787;53788;53789;53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801;53802;53803;53804;53805;53806;53807 44940;44941;44942;44943;44944;44945;44946;44947;44948;44949;44950;44951;44952;44953;44954;44955;44956;44957;44958;44959;44960;44961;44962;44963;44964;44965;44966;44967;44968;44969;44970;44971;44972;44973;44974;44975;44976 44955 32;33 34 8549800 39292000 217630000 SNMDNMFESYINNLRR LETKWSLLQQQKTARSNMDNMFESYINNLR NMDNMFESYINNLRRQLETLGQEKLKLEAE R S N R R Q 0 2 4 1 0 0 1 0 0 1 1 0 2 1 0 2 0 0 1 0 0 0 16 1 2002.8989 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 134 149 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 3.519E-27 202.89 By matching By MS/MS By MS/MS 4.32 1.43 1 2 3 8 5 5 1 1 14 10 360370000 1594300 238530000 120250000 + 12374 49 13023;13024;13025 53808;53809;53810;53811;53812;53813;53814;53815;53816;53817;53818;53819;53820;53821;53822;53823;53824;53825;53826;53827;53828;53829;53830;53831;53832 44977;44978;44979;44980;44981;44982;44983;44984;44985;44986;44987;44988;44989;44990;44991;44992;44993;44994;44995 44979 32;33 19 1243800 77144000 20407000 SNNIINETTTR KDKEKVEEFKSIPAKSNNIINETTTRNNAL IPAKSNNIINETTTRNNALEKEKEKEEKKL K S N T R N 0 1 3 0 0 0 1 0 0 2 0 0 0 0 0 1 3 0 0 0 0 0 11 0 1261.6262 Q9NTJ3 Q9NTJ3 435 445 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.0045078 102.55 By matching By MS/MS 1.33 0.471 2 1 1 2 11489000 0 2083200 9405400 12375 2054 13026 53833;53834;53835 44996;44997 44996 2 0 1018200 2057200 SNNVEETEIHWK PSVPIEHGFRRQQSKSNNVEETEIHWKLIP QSKSNNVEETEIHWKLIPITGGNARSPEDQ K S N W K L 0 0 2 0 0 0 3 0 1 1 0 1 0 0 0 1 1 1 0 1 0 0 12 0 1484.6896 Q9UK61 Q9UK61 905 916 FAM208A Protein FAM208A yes yes 3 0.067125 38.366 By MS/MS 1 0 1 1 5722500 0 0 5722500 12376 2175 13027 53836 44998 44998 1 0 0 1233000 SNNVEMDWVLK KDRETMGHRYVEVFKSNNVEMDWVLKHTGP EVFKSNNVEMDWVLKHTGPNSPDTANDGFV K S N L K H 0 0 2 1 0 0 1 0 0 0 1 1 1 0 0 1 0 1 0 2 0 0 11 0 1333.6336 P31943 P31943 88 98 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2 8.0696E-06 119.68 By MS/MS By MS/MS By MS/MS 5.11 1.1 3 4 2 1 4 4 134460000 13445000 55415000 65596000 12377 722 13028;13029 53837;53838;53839;53840;53841;53842;53843;53844;53845 44999;45000;45001;45002;45003;45004;45005;45006 45003 327 8 10490000 15964000 10657000 SNPQVYMDIK KAETQEGEPIAKKARSNPQVYMDIKIGNKP AKKARSNPQVYMDIKIGNKPAGRIQMLLRS R S N I K I 0 0 1 1 0 1 0 0 0 1 0 1 1 0 1 1 0 0 1 1 0 0 10 0 1193.5751 Q9UNP9 Q9UNP9 138 147 PPIE Peptidyl-prolyl cis-trans isomerase E yes yes 2 0.00094101 111.61 By MS/MS By matching 6 0 2 1 1 15710000 0 6256700 9453300 12378 2209 13030 53846;53847 45007 45007 1 0 2165800 1414300 SNQQLENDLNLMDIK LDLMKMREEVITLIRSNQQLENDLNLMDIK SNQQLENDLNLMDIKIGLLVKNKITLQDVV R S N I K I 0 0 3 2 0 2 1 0 0 1 3 1 1 0 0 1 0 0 0 0 0 0 15 0 1773.8567 P46940 P46940 902 916 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 1.3458E-05 162.6 By MS/MS 2 0 1 1 12947000 0 12947000 0 12379 835 13031 53848 45008 45008 1 0 5830300 0 SNRDELELELAENR QFQMRRLKKQLADERSNRDELELELAENRK RSNRDELELELAENRKLLTEKDAQIAMMQQ R S N N R K 1 2 2 1 0 0 4 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 14 1 1686.8173 Q14980 Q14980 228 241 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.4791E-05 134.21 By MS/MS 1 0 2 2 10309000 0 0 10309000 12380 1327 13032 53849;53850 45009;45010 45010 2 0 0 2221200 SNRDELELELAENRK QFQMRRLKKQLADERSNRDELELELAENRK SNRDELELELAENRKLLTEKDAQIAMMQQR R S N R K L 1 2 2 1 0 0 4 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 15 2 1814.9123 Q14980 Q14980 228 242 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3;4 5.1416E-10 104.41 By matching By MS/MS 1.2 0.4 4 1 1 4 103350000 2407200 0 100950000 12381 1327 13033 53851;53852;53853;53854;53855 45011;45012;45013 45013 3 2407200 0 21779000 SNSFVYLEPLPR EHQDAYHSANLVFSRSNSFVYLEPLPRELP FSRSNSFVYLEPLPRELPCGKTQTVQAHYV R S N P R E 0 1 1 0 0 0 1 0 0 0 2 0 0 1 2 2 0 0 1 1 0 0 12 0 1420.7351 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 455 466 yes yes 2 2.1248E-05 152.54 By MS/MS By MS/MS 5.5 4.5 1 1 1 1 6948500 5297200 1651300 0 + 12382 28 13034 53856;53857 45014;45015 45014 2 5297200 8354200 0 SNSLISIK QKREEGWWVVIGDAKSNSLISIKRLTLQQK VVIGDAKSNSLISIKRLTLQQKAKVKLDFV K S N I K R 0 0 1 0 0 0 0 0 0 2 1 1 0 0 0 3 0 0 0 0 0 0 8 0 860.49673 O75643 O75643 2073 2080 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.001952 110.12 By MS/MS 1 0 1 1 17280000 0 17280000 0 12383 277 13035 53858 45016 45016 1 0 8446400 0 SNTAGSQSQVETEA SGDHPTDTEMKEEQKSNTAGSQSQVETEA_ KSNTAGSQSQVETEA_______________ K S N E A - 2 0 1 0 0 2 2 1 0 0 0 0 0 0 0 3 2 0 0 1 0 0 14 0 1407.6114 Q02790 Q02790 446 459 FKBP4 Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed yes yes 2 0.0004379 121.36 By MS/MS 4 0 1 1 4745700 4745700 0 0 12384 1148 13036 53859 45017 45017 1 3702500 0 0 SNTENLSQHFR KYQKAAEETNMEKKRSNTENLSQHFRKGTL EKKRSNTENLSQHFRKGTLTVLKKKWENPG R S N F R K 0 1 2 0 0 1 1 0 1 0 1 0 0 1 0 2 1 0 0 0 0 0 11 0 1331.6218 Q9UHB6 Q9UHB6 55 65 LIMA1 LIM domain and actin-binding protein 1 yes yes 2;3 5.0444E-05 144.77 By matching By MS/MS By MS/MS 2 0.632 1 3 1 1 1 3 20802000 802550 3364900 16635000 12385 2150 13037 53860;53861;53862;53863;53864 45018;45019;45020 45018 3 802550 1515300 3665500 SNTLPISLQSIR EAANGNLDFVLSFLKSNTLPISLQSIRSSL FLKSNTLPISLQSIRSSLLLGFRRSMNINL K S N I R S 0 1 1 0 0 1 0 0 0 2 2 0 0 0 1 3 1 0 0 0 0 0 12 0 1327.746 P42704 P42704 530 541 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0055678 101.93 By MS/MS By matching 2 0.816 1 1 1 2 1 107400000 0 105590000 1811900 12386 808 13038 53865;53866;53867 45021 45021 1 0 51339000 351430 SNTVVIMNMQGQIVR ILLPKNPEHFVVCNRSNTVVIMNMQGQIVR SNTVVIMNMQGQIVRSFSSGKREGGDFVCC R S N V R S 0 1 2 0 0 2 0 1 0 2 0 0 2 0 0 1 1 0 0 3 0 0 15 0 1688.8702 Q2TAY7 Q2TAY7 419 433 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2 8.2666E-48 227.94 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 32548000 0 20236000 12313000 12387 1407 13039 53868;53869;53870 45022;45023;45024 45022 3 0 6448200 2011000 SNVIDSMLFVFGYR HKRFSCIIGPNGSGKSNVIDSMLFVFGYRA KSNVIDSMLFVFGYRAQKIRSKKLSVLIHN K S N Y R A 0 1 1 1 0 0 0 1 0 1 1 0 1 2 0 2 0 0 1 2 0 0 14 0 1646.8127 Q9NTJ3 Q9NTJ3 120 133 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.0015002 106.35 By MS/MS 1.5 0.5 1 1 2 5369600 0 0 5369600 12388 2054 13040 53871;53872 45025 45025 1 0 0 1183000 SNVKPNSGELDPLYVVEVLLR GDDFGWGVVVNFSKKSNVKPNSGELDPLYV SGELDPLYVVEVLLRCSKESLKNSATEAAK K S N L R C 0 1 2 1 0 0 2 1 0 0 4 1 0 0 2 2 0 0 1 4 0 0 21 1 2340.2689 P42285 P42285 681 701 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 3 5.1006E-08 103.31 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 22927000 0 521940 22405000 12389 800 13041 53873;53874;53875 45026;45027;45028 45027 3 0 235040 5001900 SNVSDAVAQSTR QQAQEVHEKLRGWLKSNVSDAVAQSTRIIY WLKSNVSDAVAQSTRIIYGGSVTGATCKEL K S N T R I 2 1 1 1 0 1 0 0 0 0 0 0 0 0 0 3 1 0 0 2 0 0 12 0 1233.5949 P60174 P60174 232 243 TPI1 Triosephosphate isomerase yes yes 2 4.4444E-18 192.38 By MS/MS By MS/MS By MS/MS 6.12 2.93 1 1 1 3 1 1 6 1 1 76048000 45078000 8775200 22194000 12390 962 13042 53876;53877;53878;53879;53880;53881;53882;53883 45029;45030;45031;45032;45033;45034;45035 45034 7 70751000 5038800 3938200 SNYNFEKPFLWLAR FHRKKNLQYYDISAKSNYNFEKPFLWLARK KSNYNFEKPFLWLARKLIGDPNLEFVAMPA K S N A R K 1 1 2 0 0 0 1 0 0 0 2 1 0 2 1 1 0 1 1 0 0 0 14 1 1783.9046 P62826 P62826 153 166 RAN GTP-binding nuclear protein Ran yes yes 2;3 1.1876E-10 180.97 By MS/MS By MS/MS 6.56 1.26 2 3 2 1 1 1 8 401040000 0 4011300 397020000 12391 1035 13043 53884;53885;53886;53887;53888;53889;53890;53891;53892 45036;45037;45038;45039;45040;45041;45042;45043 45039 8 0 1388600 66924000 SNYNLPMHK LDELYGTWRKAASLKSNYNLPMHKMINTDL KAASLKSNYNLPMHKMINTDLSRILKSPEI K S N H K M 0 0 2 0 0 0 0 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 9 0 1102.523 P36578 P36578 275 283 RPL4 60S ribosomal protein L4 yes yes 2 0.0087301 90.37 By MS/MS 4 0 1 1 8609700 0 0 8609700 12392 762 13044 53893 45044 45044 1 0 0 1406200 SPAASSFGSPGFSGLPASLATGPVR FGKPEVTSAASFSFKSPAASSFGSPGFSGL GFSGLPASLATGPVRAPVAPAFGGGSSVAG K S P V R A 4 1 0 0 0 0 0 4 0 0 2 0 0 2 4 6 1 0 0 1 0 0 25 0 2317.1703 O15504 O15504 305 329 NUPL2 Nucleoporin-like protein 2 yes yes 3 1.3451E-08 80.702 By MS/MS 5 0 1 1 5233800 0 5233800 0 12393 184 13045 53894 45045 45045 0 0 1349100 0 SPAGLQVLNDYLADK ______________________________ SPAGLQVLNDYLADKSYIEGYVPSQADVAV K S P D K S 2 0 1 2 0 1 0 1 0 0 3 1 0 0 1 1 0 0 1 1 0 0 15 0 1602.8253 P24534 P24534 8 22 EEF1B2 Elongation factor 1-beta yes yes 2 5.3669E-08 172.99 By MS/MS By MS/MS 6.25 0.829 1 1 2 1 3 183530000 0 2238400 181300000 12394 649 13046 53895;53896;53897;53898 45046;45047;45048;45049 45047 4 0 1285300 28508000 SPAGPAATPAQAQAASTPR AQVIKPPLIFVDPNRSPAGPAATPAQAQAA PAATPAQAQAASTPRKARASESTARSSSSE R S P P R K 7 1 0 0 0 2 0 1 0 0 0 0 0 0 4 2 2 0 0 0 0 0 19 0 1748.8806 Q13428 Q13428 967 985 TCOF1 Treacle protein yes yes 2;3 1.3848E-12 169.4 By matching By matching By MS/MS 1.5 0.764 4 1 1 1 1 4 27912000 1086100 1174900 25651000 12395 1247 13047 53899;53900;53901;53902;53903;53904 45050;45051;45052;45053 45050 4 1086100 574260 5480100 SPAGSIVHELNPNFQPPK RLEDLVCDVVDRILKSPAGSIVHELNPNFQ GSIVHELNPNFQPPKRPFKRMNYSDAIVWL K S P P K R 1 0 2 0 0 1 1 1 1 1 1 1 0 1 4 2 0 0 0 1 0 0 18 0 1930.9901 O43776 O43776 368 385 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2;3 2.232E-115 269.93 By MS/MS By MS/MS 3.89 0.737 3 4 2 4 5 148130000 0 69309000 78817000 12396 211 13048 53905;53906;53907;53908;53909;53910;53911;53912;53913 45054;45055;45056;45057;45058;45059;45060;45061;45062;45063;45064;45065;45066 45058 13 0 23695000 14400000 SPAGSQQQFGYSPGQQQTHPQGSPR FGSPSPGGYPGSYSRSPAGSQQQFGYSPGQ YSPGQQQTHPQGSPRTSTPFGSGRVREKRM R S P P R T 1 1 0 0 0 7 0 4 1 0 0 0 0 1 4 4 1 0 1 0 0 0 25 0 2654.2222 Q8TAP9 Q8TAP9 93 117 MPLKIP M-phase-specific PLK1-interacting protein yes yes 3 1.3363E-16 106.99 By MS/MS 7 0 1 1 7412100 0 7412100 0 12397 1652 13049 53914 45067 45067 1 0 4256000 0 SPALQVLR NTILKCLRRFHVFARSPALQVLREMKAIGI RFHVFARSPALQVLREMKAIGIEPSLATYH R S P L R E 1 1 0 0 0 1 0 0 0 0 2 0 0 0 1 1 0 0 0 1 0 0 8 0 882.5287 Q96EY7 Q96EY7 351 358 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.023243 81.784 By MS/MS 3 0 1 1 3128200 0 3128200 0 12398 1780 13050 53915 45068 45068 1 0 1333500 0 SPAPPLLHVAALGQK NAVKVQTLSNQPLLKSPAPPLLHVAALGQK SPAPPLLHVAALGQKQGILGAQPQLIFQPH K S P Q K Q 3 0 0 0 0 1 0 1 1 0 3 1 0 0 3 1 0 0 0 1 0 0 15 0 1497.8667 Q8N163 Q8N163 124 138 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 3 0.0017673 76.728 By MS/MS 1.5 0.5 1 1 2 14384000 0 0 14384000 12399 1598 13051 53916;53917 45069 45069 1 0 0 3230200 SPAQILQWQVLSNTVPAK QFLPYPYYAKPAAVRSPAQILQWQVLSNTV QILQWQVLSNTVPAKSCQAQPTTMARHPHP R S P A K S 2 0 1 0 0 3 0 0 0 1 2 1 0 0 2 2 1 1 0 2 0 0 18 0 1979.084 CON__P02668 CON__P02668 69 86 yes yes 2;3 1.3021E-114 266.35 By MS/MS 6.4 3.2 1 1 1 1 1 5 36539000 36539000 0 0 + 12400 42 13052 53918;53919;53920;53921;53922 45070;45071;45072;45073;45074 45070 5 38540000 0 0 SPASDTYIVFGEAK SKNILFVITKPDVYKSPASDTYIVFGEAKI KSPASDTYIVFGEAKIEDLSQQAQLAAAEK K S P A K I 2 0 0 1 0 0 1 1 0 1 0 1 0 1 1 2 1 0 1 1 0 0 14 0 1483.7195 E9PAV3;Q13765 E9PAV3 1977 1990 NACA Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha yes no 2 0.0033373 95.018 By matching By MS/MS 6 0 2 1 1 109120000 0 18464000 90654000 12401 102 13053 53923;53924 45075 45075 1 0 6391600 13563000 SPASIEVVKPMEAASAILSQADAR FIVSPLNSSSALALRSPASIEVVKPMEAAS PMEAASAILSQADARQVVLKYTVPGYRNSL R S P A R Q 6 1 0 1 0 1 2 0 0 2 1 1 1 0 2 4 0 0 0 2 0 0 24 1 2440.2632 Q9BVP2 Q9BVP2 324 347 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2;3 4.2478E-43 203.04 By MS/MS By MS/MS 3.4 0.49 3 2 2 3 59583000 0 20484000 39099000 12402 1917 13054 53925;53926;53927;53928;53929 45076;45077;45078;45079 45079 4 0 7358700 7457800 SPDEVTLTSIVPTR LDTQRTISRKEKGGRSPDEVTLTSIVPTRD RSPDEVTLTSIVPTRDGTAPPPQSPGSPGT R S P T R D 0 1 0 1 0 0 1 0 0 1 1 0 0 0 2 2 3 0 0 2 0 0 14 0 1513.7988 Q9UKS6 Q9UKS6 319 332 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 yes yes 2 1.3803E-24 196.11 By matching By MS/MS By MS/MS 3 0.894 2 1 2 1 1 3 27884000 6432100 6130000 15322000 12403 2183 13055 53930;53931;53932;53933;53934 45080;45081 45081 2 7749800 2034300 2890500 SPDSATVSGYDIMK LKEQLKAATEALGEKSPDSATVSGYDIMKS KSPDSATVSGYDIMKSKSNPDFLKKDRSCV K S P M K S 1 0 0 2 0 0 0 1 0 1 0 1 1 0 1 3 1 0 1 1 0 0 14 0 1469.6708 Q6WCQ1 Q6WCQ1 977 990 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 2.3545E-11 178.67 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 11757000 0 4550400 7206300 12404 1507 13056 53935;53936;53937 45082;45083 45083 2 0 2086700 1628500 SPDSDVAATLK IVALNKIDRLYDWKKSPDSDVAATLKKQKK DWKKSPDSDVAATLKKQKKNTKDEFEERAK K S P L K K 2 0 0 2 0 0 0 0 0 0 1 1 0 0 1 2 1 0 0 1 0 0 11 0 1102.5506 O60841 O60841 767 777 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 1.2049E-05 111.06 By matching By MS/MS By MS/MS 1.5 0.5 2 2 1 2 1 28841000 14630000 6599400 7611600 12405 236 13057 53938;53939;53940;53941 45084;45085;45086 45085 3 14630000 3225700 1720100 SPDSDVAATLKK IVALNKIDRLYDWKKSPDSDVAATLKKQKK WKKSPDSDVAATLKKQKKNTKDEFEERAKA K S P K K Q 2 0 0 2 0 0 0 0 0 0 1 2 0 0 1 2 1 0 0 1 0 0 12 1 1230.6456 O60841 O60841 767 778 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.0012101 121.9 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 3048400 0 3048400 0 12406 236 13058 53942;53943 45087;45088 45087 2 0 1372800 0 SPDTILQK LRRYIKEYVTCHTCRSPDTILQKDTRLYFL VTCHTCRSPDTILQKDTRLYFLQCETCHSR R S P Q K D 0 0 0 1 0 1 0 0 0 1 1 1 0 0 1 1 1 0 0 0 0 0 8 0 900.49165 P20042 P20042 286 293 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.006677 97.798 By MS/MS 4.5 0.5 1 1 2 19802000 0 0 19802000 12407 613 13059 53944;53945 45089 45089 1 0 0 2843400 SPEEHLEEMMK LSGSPLKVKNSKNSKSPEEHLEEMMKMMSP KNSKSPEEHLEEMMKMMSPNKLHTNFHIPK K S P M K M 0 0 0 0 0 0 4 0 1 0 1 1 2 0 1 1 0 0 0 0 0 0 11 0 1358.5846 Q9UIG0 Q9UIG0 361 371 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2;3 1.2659E-05 151.22 By MS/MS 1.5 0.5 2 2 4 38800000 0 0 38800000 12408 2164 13060 53946;53947;53948;53949 45090;45091 45090 2 0 0 8441500 SPEEVMEYSAVFWER GRDDIDNIAREVEGKSPEEVMEYSAVFWER SPEEVMEYSAVFWERCNELQDIEKIMAQIE K S P E R C 1 1 0 0 0 0 4 0 0 0 0 0 1 1 1 2 0 1 1 2 0 0 15 0 1857.8244 P28370 P28370 891 905 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 8.645E-27 206.51 By matching By MS/MS 2 0 2 1 1 7780600 1088200 0 6692400 12409 693 13061 53950;53951 45092 45092 1 1311200 0 1512400 SPEGLLGVLGHMLSGK TVTNILKTMDADHSKSPEGLLGVLGHMLSG PEGLLGVLGHMLSGKSLDLLLAAAAATGKL K S P G K S 0 0 0 0 0 0 1 4 1 0 4 1 1 0 1 2 0 0 0 1 0 0 16 0 1593.8549 O75448 O75448 431 446 MED24 Mediator of RNA polymerase II transcription subunit 24 yes yes 3 0.0062736 58.671 By MS/MS 2.5 0.5 1 1 2 1314400 0 0 1314400 12410 261 13062 53952;53953 45093 45093 1 0 0 271100 SPEIAASLWQSLEYTQILQTVR VLKAELLKTLAAFGKSPEIAASLWQSLEYT LWQSLEYTQILQTVRIPSQRQAIGIEVELN K S P V R I 2 1 0 0 0 3 2 0 0 2 3 0 0 0 1 3 2 1 1 1 0 0 22 0 2532.3224 Q92621 Q92621 656 677 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 1.8596E-67 173.03 By MS/MS 1 0 2 2 3485900 0 0 3485900 12411 1714 13063 53954;53955 45094;45095 45095 1 0 0 751090 SPELQAEAK QTVTDYGKDLMEKVKSPELQAEAKSYFEKS LMEKVKSPELQAEAKSYFEKSKEQLTPLIK K S P A K S 2 0 0 0 0 1 2 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 9 0 971.49238 P02652 P02652 54 62 APOA2 Apolipoprotein A-II;Proapolipoprotein A-II;Truncated apolipoprotein A-II yes yes 2 0.00066644 114.89 By MS/MS 7.25 3.63 1 2 1 4 6331900 6331900 0 0 12412 390 13064 53956;53957;53958;53959 45096;45097;45098;45099;45100;45101 45097 6 5309300 0 0 SPEQNVPVILLK GTDPRILSIAAEVAKSPEQNVPVILLKLKE VAKSPEQNVPVILLKLKEIINITPLGSSEL K S P L K L 0 0 1 0 0 1 1 0 0 1 2 1 0 0 2 1 0 0 0 2 0 0 12 0 1335.7762 Q15051 Q15051 20 31 IQCB1 IQ calmodulin-binding motif-containing protein 1 yes yes 2 0.0040089 105.4 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 10322000 0 5487900 4834400 12413 1338 13065 53960;53961;53962 45102;45103 45102 2 0 2099300 937640 SPEQQLSATQK GGVITSDMIEMIFSKSPEQQLSATQKFRKL IFSKSPEQQLSATQKFRKLLSKEPNPPIDE K S P Q K F 1 0 0 0 0 3 1 0 0 0 1 1 0 0 1 2 1 0 0 0 0 0 11 0 1215.6095 P52294 P52294 95 105 KPNA1 Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed yes yes 2 0.0009862 114.5 By MS/MS By MS/MS 4 0 2 1 1 2877400 0 1178300 1699200 12414 904 13066 53963;53964 45104;45105 45105 2 0 391030 277530 SPEVLLGSAR PIRVYTHEVVTLWYRSPEVLLGSARYSTPV TLWYRSPEVLLGSARYSTPVDIWSIGTIFA R S P A R Y 1 1 0 0 0 0 1 1 0 0 2 0 0 0 1 2 0 0 0 1 0 0 10 0 1027.5662 P06493 P06493 171 180 CDK1 Cyclin-dependent kinase 1 yes yes 2 1.9608E-22 191.16 By MS/MS By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 53584000 6009900 15783000 31790000 12415 443 13067 53965;53966;53967;53968 45106;45107;45108 45108 3 8002200 5463600 4857900 SPEVLSGGEDGAVR RGHTDYIHCLALRERSPEVLSGGEDGAVRL RSPEVLSGGEDGAVRLWDLRTAKEVQTIEV R S P V R L 1 1 0 1 0 0 2 3 0 0 1 0 0 0 1 2 0 0 0 2 0 0 14 0 1371.663 Q86W42 Q86W42 180 193 THOC6 THO complex subunit 6 homolog yes yes 2 0.00048101 136.48 By MS/MS By MS/MS 6 0 2 1 1 24130000 0 2986500 21143000 12416 1555 13068 53969;53970 45109;45110 45110 2 0 1033800 3163300 SPFEVNVGMALGDANK LHKVTVLFAGQNIERSPFEVNVGMALGDAN PFEVNVGMALGDANKVSARGPGLEPVGNVA R S P N K V 2 0 2 1 0 0 1 2 0 0 1 1 1 1 1 1 0 0 0 2 0 0 16 0 1647.7927 Q14315 Q14315 362 377 FLNC Filamin-C yes yes 2 6.8493E-06 158.11 By MS/MS By matching 2 0.816 1 1 1 2 1 9880000 0 4414300 5465700 12417 1298 13069 53971;53972;53973 45111 45111 593 1 0 2115900 1060100 SPFEVQVGPEAGMQK RYSIAITWGGHHIPKSPFEVQVGPEAGMQK SPFEVQVGPEAGMQKVRAWGPGLHGGIVGR K S P Q K V 1 0 0 0 0 2 2 2 0 0 0 1 1 1 2 1 0 0 0 2 0 0 15 0 1602.7712 O75369 O75369 537 551 FLNB Filamin-B yes yes 2 4.2913E-18 194.48 By MS/MS 1 0 1 1 5165100 0 5165100 0 12418 254 13070 53974 45112 45112 1 0 2524600 0 SPFEVQVSPEAGVQK KYVVTITWGGYAIPRSPFEVQVSPEAGVQK SPFEVQVSPEAGVQKVRAWGPGLETGQVGK R S P Q K V 1 0 0 0 0 2 2 1 0 0 0 1 0 1 2 2 0 0 0 3 0 0 15 0 1600.8097 Q14315 Q14315 559 573 FLNC Filamin-C yes yes 2 3.4307E-25 201.66 By matching By MS/MS By MS/MS 2 1 2 2 1 2 1 43602000 11091000 21280000 11232000 12419 1298 13071 53975;53976;53977;53978 45113;45114;45115 45113 3 12796000 10262000 2420000 SPFEVYVDK THKVTVLFAGQHIAKSPFEVYVDKSQGDAS GQHIAKSPFEVYVDKSQGDASKVTAQGPGL K S P D K S 0 0 0 1 0 0 1 0 0 0 0 1 0 1 1 1 0 0 1 2 0 0 9 0 1082.5284 P21333 P21333 368 376 FLNA Filamin-A yes yes 2 0.016986 84.213 By MS/MS 2.67 1.7 1 1 1 3 17095000 0 17095000 0 12420 623 13072 53979;53980;53981 45116 45116 1 0 8131300 0 SPFNSPSPQDSPR EGGISSPVKKTEMDKSPFNSPSPQDSPRLS DKSPFNSPSPQDSPRLSSFTQHHRPVIAVH K S P P R L 0 1 1 1 0 1 0 0 0 0 0 0 0 1 4 4 0 0 0 0 0 0 13 0 1414.6477 P08651 P08651 333 345 NFIC Nuclear factor 1 C-type yes yes 2 0.00092966 115.57 By MS/MS 4 0 1 1 4090600 0 0 4090600 12421 475 13073 53982 45117 45117 1 0 0 668120 SPFSVAVSPSLDLSK PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK SPFSVAVSPSLDLSKIKVSGLGEKVDVGKD K S P S K I 1 0 0 1 0 0 0 0 0 0 2 1 0 1 2 5 0 0 0 2 0 0 15 0 1532.8086 P21333 P21333 959 973 FLNA Filamin-A yes yes 2 1.0948E-34 213.38 By MS/MS By MS/MS By matching 1 0 3 1 1 1 63277000 2490200 42647000 18140000 12422 623 13074 53983;53984;53985 45118;45119 45119 2 2490200 20845000 3908600 SPFTVGVAAPLDLSK NMQVLVTYGGDPIPKSPFTVGVAAPLDLSK SPFTVGVAAPLDLSKIKLNGLENRVEVGKD K S P S K I 2 0 0 1 0 0 0 1 0 0 2 1 0 1 2 2 1 0 0 2 0 0 15 0 1500.8188 O75369 O75369 932 946 FLNB Filamin-B yes yes 2 0.00026494 149.23 By MS/MS By matching 1.5 0.5 1 1 1 1 14336000 0 12357000 1979100 12423 254 13075 53986;53987 45120 45120 1 0 6040000 447230 SPFVVNVAPPLDLSK NMAVTVTYGGDPVPKSPFVVNVAPPLDLSK SPFVVNVAPPLDLSKIKVQGLNSKVAVGQE K S P S K I 1 0 1 1 0 0 0 0 0 0 2 1 0 1 3 2 0 0 0 3 0 0 15 0 1581.8766 Q14315 Q14315 954 968 FLNC Filamin-C yes yes 2 2.4174E-07 167.3 By MS/MS 1.5 0.5 1 1 2 32481000 0 32481000 0 12424 1298 13076 53988;53989 45121;45122;45123 45121 3 0 15745000 0 SPGAQLWLFPSAAGLHR GRSTAGKAAATQPAKSPGAQLWLFPSAAGL GAQLWLFPSAAGLHRALLRRVEVTRQLCCS K S P H R A 3 1 0 0 0 1 0 2 1 0 3 0 0 1 2 2 0 1 0 0 0 0 17 0 1806.9529 Q9UII4 Q9UII4 28 44 HERC5 E3 ISG15--protein ligase HERC5 yes yes 3 1.0779E-05 101.04 By MS/MS By MS/MS 2 0 2 1 1 7729600 0 4365900 3363700 12425 2165 13077 53990;53991 45124;45125 45125 2 0 1966000 760130 SPGHMVILDQTK ESIKKSEEKKRISSKSPGHMVILDQTKGDH SSKSPGHMVILDQTKGDHCRPSRRGRYEKI K S P T K G 0 0 0 1 0 1 0 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 12 0 1324.6809 Q9NWH9 Q9NWH9 553 564 SLTM SAFB-like transcription modulator yes yes 3 0.023317 59.227 By MS/MS 2 0 1 1 11872000 0 0 11872000 12426 2078 13078 53992 45126 45126 1 0 0 2682800 SPGLPMSDLK GPGTEDAALRMEVDRSPGLPMSDLKTHNVH MEVDRSPGLPMSDLKTHNVHVEIEQRWHQV R S P L K T 0 0 0 1 0 0 0 1 0 0 2 1 1 0 2 2 0 0 0 0 0 0 10 0 1043.5321 Q6WCQ1 Q6WCQ1 619 628 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 0.059183 70.439 By MS/MS 1.5 0.5 1 1 2 3547900 0 3547900 0 12427 1507 13079 53993;53994 45127 45127 1 0 1656000 0 SPGLYFLTAGDQGTLR AVLLPEEPVSQLGVKSPGLYFLTAGDQGTL PGLYFLTAGDQGTLRVWEAASGQCVYTQAQ K S P L R V 1 1 0 1 0 1 0 3 0 0 3 0 0 1 1 1 2 0 1 0 0 0 16 0 1694.8628 Q12788 Q12788 257 272 TBL3 Transducin beta-like protein 3 yes yes 2 4.7063E-36 215.04 By MS/MS By MS/MS 3.17 2.73 2 1 2 1 4 2 58421000 0 26507000 31914000 12428 1197 13080 53995;53996;53997;53998;53999;54000 45128;45129;45130;45131;45132 45132 5 0 11953000 6321500 SPGTQEMLR AVKALKLESENRNGRSPGTQEMLRMWYELD ENRNGRSPGTQEMLRMWYELDEESRRKYQK R S P L R M 0 1 0 0 0 1 1 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 9 0 1017.4913 O95602 O95602 1114 1122 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.00049686 118.5 By MS/MS 1 0 1 1 2713200 0 2713200 0 12429 330 13081 54001 45133 45133 1 0 1326200 0 SPHIETYLK VVVQVLDARDPMGTRSPHIETYLKKEKPWK DPMGTRSPHIETYLKKEKPWKHLIFVLNKC R S P L K K 0 0 0 0 0 0 1 0 1 1 1 1 0 0 1 1 1 0 1 0 0 0 9 0 1086.571 Q13823 Q13823 234 242 GNL2 Nucleolar GTP-binding protein 2 yes yes 2 0.00557 96.027 By MS/MS 2 0 1 1 9692100 0 0 9692100 12430 1269 13082 54002 45134 45134 1 0 0 2190200 SPHIETYLKK VVVQVLDARDPMGTRSPHIETYLKKEKPWK PMGTRSPHIETYLKKEKPWKHLIFVLNKCD R S P K K E 0 0 0 0 0 0 1 0 1 1 1 2 0 0 1 1 1 0 1 0 0 0 10 1 1214.6659 Q13823 Q13823 234 243 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 0.039078 51.252 By MS/MS By matching 2.5 0.5 1 1 1 1 4859400 0 3834700 1024700 12431 1269 13083 54003;54004 45135 45135 1 0 1726800 198750 SPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQK APRAVAPYKYASSVRSPHPAIQPLQAPQPA LTASMLAAAPPQEQKQMLGERLFPLIQTMH R S P Q K Q 7 0 0 0 0 7 2 1 2 1 3 1 1 0 8 2 1 0 0 2 0 0 38 0 3962.0473 Q13310 Q13310 531 568 PABPC4 Polyadenylate-binding protein 4 yes yes 4 9.9615E-79 145.1 By MS/MS 2.5 0.5 1 1 2 43946000 0 43946000 0 12432 1237 13084 54005;54006 45136;45137 45136 2 0 18792000 0 SPIAPEELALVHNLR INALWGRTTLKREDKSPIAPEELALVHNLR SPIAPEELALVHNLRKMMKNDWHGGAIVSA K S P L R K 2 1 1 0 0 0 2 0 1 1 3 0 0 0 2 1 0 0 0 1 0 0 15 0 1657.9152 P51398 P51398 280 294 DAP3 28S ribosomal protein S29, mitochondrial yes yes 3 0.00050069 88.282 By MS/MS 5 0 1 1 7889400 0 0 7889400 12433 892 13085 54007 45138 45138 1 0 0 1100400 SPILVATAVAAR QRDREEALHQFRSGKSPILVATAVAARGLD SGKSPILVATAVAARGLDISNVKHVINFDL K S P A R G 4 1 0 0 0 0 0 0 0 1 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1167.6976 O00571;O15523 O00571 492 503 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 1.9369E-45 219.8 By MS/MS By MS/MS 5.45 2.46 1 2 2 1 1 2 1 1 5 6 507150000 0 256270000 250870000 12434 131 13086 54008;54009;54010;54011;54012;54013;54014;54015;54016;54017;54018 45139;45140;45141;45142;45143;45144;45145;45146;45147;45148 45139 9 0 104670000 50023000 SPISVAAAAIYMASQASAEKR HIARKAVELDLVPGRSPISVAAAAIYMASQ AAAIYMASQASAEKRTQKEIGDIAGVADVT R S P K R T 7 1 0 0 0 1 1 0 0 2 0 1 1 0 1 4 0 0 1 1 0 0 21 1 2121.0888 Q00403 Q00403 249 269 GTF2B Transcription initiation factor IIB yes yes 3 0.00046227 65.954 By MS/MS By matching 6.5 0.5 1 1 1 1 1855700 0 1221000 634690 12435 1123 13087 54019;54020 45149 45149 1 0 422670 112620 SPKPLLTGLMWAQQGTTPGTPK WGTYRPHVYFGMKTRSPKPLLTGLMWAQQG GLMWAQQGTTPGTPKLRHTCEQGDGVGPYG R S P P K L 1 0 0 0 0 2 0 3 0 0 3 2 1 0 4 1 4 1 0 0 0 0 22 1 2308.2249 Q13724 Q13724 111 132 MOGS Mannosyl-oligosaccharide glucosidase yes yes 3 5.3432E-07 84.327 By MS/MS By matching 2.5 0.5 1 1 1 1 13618000 0 6935700 6682500 12436 1266 13088 54021;54022 45150 45150 1 0 3123300 1296100 SPLIESTANMDNNQSQK QKKQNLLHSEKRDKKSPLIESTANMDNNQS LIESTANMDNNQSQKTFKNKETLIIEPEKN K S P Q K T 1 0 3 1 0 2 1 0 0 1 1 1 1 0 1 3 1 0 0 0 0 0 17 0 1875.8633 O14974 O14974 299 315 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes yes 2 4.0648E-27 198.49 By MS/MS 2 0 1 1 3641600 0 3641600 0 12437 156 13089 54023 45151 45151 1 0 1639800 0 SPLKPESQLDLR NTQDEEETKKEESLKSPLKPESQLDLRVQE SLKSPLKPESQLDLRVQELIKLICNVQAME K S P L R V 0 1 0 1 0 1 1 0 0 0 3 1 0 0 2 2 0 0 0 0 0 0 12 1 1381.7565 Q9UGN5 Q9UGN5 226 237 PARP2 Poly [ADP-ribose] polymerase 2 yes yes 3 0.048273 50.914 By matching By MS/MS 2 0.816 1 1 1 2 1 20321000 0 7779400 12542000 12438 2144 13090 54024;54025;54026 45152 45152 1 0 3532100 2432600 SPLLPAVLEGLAK IVFVTYFRILKKAQRSPLLPAVLEGLAKFA QRSPLLPAVLEGLAKFAHLINVEFFDDLLV R S P A K F 2 0 0 0 0 0 1 1 0 0 4 1 0 0 2 1 0 0 0 1 0 0 13 0 1306.786 Q8WTT2 Q8WTT2 512 524 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.0039946 103.22 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 75472000 0 32235000 43237000 12439 1670 13091 54027;54028;54029;54030;54031;54032;54033 45153;45154;45155;45156;45157 45157 5 0 14431000 9242500 SPLMSEFQSQISSNPELAAIFESIQK MRAVAALLTIPEAEKSPLMSEFQSQISSNP SSNPELAAIFESIQKDSSSTNLESMDTS__ K S P Q K D 2 0 1 0 0 3 3 0 0 3 2 1 1 2 2 6 0 0 0 0 0 0 26 0 2880.4215 Q86VP6 Q86VP6 1192 1217 CAND1 Cullin-associated NEDD8-dissociated protein 1 yes yes 3 2.9576E-05 64.27 By MS/MS 2 0 1 1 3560800 0 0 3560800 12440 1554 13092 54034 45158 45158 1 0 0 804680 SPLQSVVVR AVSELSPRERSPALKSPLQSVVVRRRSPRP RSPALKSPLQSVVVRRRSPRPSPVPKPSPP K S P V R R 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 2 0 0 0 3 0 0 9 0 983.57638 Q9Y2W1 Q9Y2W1 253 261 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 3.4375E-25 151.04 By MS/MS By MS/MS By MS/MS 2.5 1.32 2 3 1 1 1 1 5 2 81357000 7053600 38449000 35855000 12441 2252 13093 54035;54036;54037;54038;54039;54040;54041;54042 45159;45160;45161;45162;45163;45164 45164 6 8498700 16972000 7725500 SPLSALAR KQHQKALPKKGVLGKSPLSALARKKARLSL KKGVLGKSPLSALARKKARLSLVIRSPSLL K S P A R K 2 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 0 0 0 0 0 0 8 0 813.47085 Q9BQG0 Q9BQG0 1290 1297 MYBBP1A Myb-binding protein 1A yes yes 2 0.00014529 143.85 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 17466000 0 6343600 11123000 12442 1885 13094 54043;54044;54045 45165;45166 45165 2 0 2856600 2435000 SPLTQEQLIPNLAMK EEHLQRVGHFDPVTRSPLTQEQLIPNLAMK SPLTQEQLIPNLAMKEVIDAFISENGWVED R S P M K E 1 0 1 0 0 2 1 0 0 1 3 1 1 0 2 1 1 0 0 0 0 0 15 0 1681.9073 Q9UNE7 Q9UNE7 273 287 STUB1 E3 ubiquitin-protein ligase CHIP yes yes 2 3.9508E-47 227.81 By MS/MS By MS/MS 6 0 2 1 1 46585000 0 15761000 30824000 12443 2204 13095 54046;54047 45167;45168 45167 2 0 5455800 4611600 SPLVAAMQHFLPVLK YQLVKNYEYKKPEERSPLVAAMQHFLPVLK SPLVAAMQHFLPVLKDRFIQLLSDQSDQSV R S P L K D 2 0 0 0 0 1 0 0 1 0 3 1 1 1 2 1 0 0 0 2 0 0 15 0 1649.9327 O95373 O95373 168 182 IPO7 Importin-7 yes yes 3 0.019812 52.101 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 3040700 0 1149500 1891200 12444 322 13096 54048;54049;54050 45169;45170 45170 2 0 517630 414300 SPLVMDVLNIQGVQR SISTEFLALMKKVSKSPLVMDVLNIQGVQR SPLVMDVLNIQGVQRSLERLADLLGKIQKA K S P Q R S 0 1 1 1 0 2 0 1 0 1 2 0 1 0 1 1 0 0 0 3 0 0 15 0 1667.9029 Q14204 Q14204 1585 1599 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.01033 58.071 By MS/MS 1 0 1 1 1527800 0 1527800 0 12445 1292 13097 54051 45171 45171 1 0 746790 0 SPNLWLK IELFYKFVPLLPGNRSPNLWLKDVLKEEGV VPLLPGNRSPNLWLKDVLKEEGVSFLINTF R S P L K D 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 1 0 1 0 0 0 0 7 0 856.48069 P78527 P78527 1203 1209 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.017136 107.67 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 16965000 1436000 4579200 10950000 12446 1089 13098 54052;54053;54054;54055 45172;45173 45172 2 1436000 2238300 2367500 SPNQNVQQAAAGALR VYQLGGICKLVDLLRSPNQNVQQAAAGALR SPNQNVQQAAAGALRNLVFRSTTNKLETRR R S P L R N 4 1 2 0 0 3 0 1 0 0 1 0 0 0 1 1 0 0 0 1 0 0 15 0 1523.7805 Q13835 Q13835 298 312 PKP1 Plakophilin-1 yes yes 2 3.0182E-89 249.5 By MS/MS By matching 6 3.38 2 1 1 1 1 1 6 1 49478000 44981000 0 4496700 12447 1270 13099 54056;54057;54058;54059;54060;54061;54062 45174;45175;45176;45177;45178;45179 45174 6 51039000 0 968880 SPNTEEIFNMLTK AELSCRYKDLRTAYRSPNTEEIFNMLTKET YRSPNTEEIFNMLTKETPETFYIGKLIICN R S P T K E 0 0 2 0 0 0 2 0 0 1 1 1 1 1 1 1 2 0 0 0 0 0 13 0 1522.7337 Q7KZ85 Q7KZ85 1143 1155 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.004629 101.47 By MS/MS 1 0 1 1 1791400 0 1791400 0 12448 1517 13100 54063 45180 45180 1 0 875600 0 SPPEALVQGR KADQEEQIHPRSRLRSPPEALVQGRYPHIK RSRLRSPPEALVQGRYPHIKDGEDLKDHST R S P G R Y 1 1 0 0 0 1 1 1 0 0 1 0 0 0 2 1 0 0 0 1 0 0 10 0 1052.5615 Q9UHB6 Q9UHB6 132 141 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 0.015839 89.698 By MS/MS 2 0 1 1 0 0 0 0 12449 2150 13101 54064 45181 45181 1 0 0 0 SPPILPTLDSLK NFSLTMMVIFFLQRRSPPILPTLDSLKTLA QRRSPPILPTLDSLKTLADAEDKCVIEGNN R S P L K T 0 0 0 1 0 0 0 0 0 1 3 1 0 0 3 2 1 0 0 0 0 0 12 0 1279.7388 Q9NVV4 Q9NVV4 392 403 MTPAP Poly(A) RNA polymerase, mitochondrial yes yes 2 0.0011251 116.77 By MS/MS By MS/MS 3.6 1.02 1 1 2 1 2 3 55152000 0 29684000 25469000 12450 2072 13102 54065;54066;54067;54068;54069 45182;45183 45182 2 0 9968200 4439000 SPPLIGSESAYESFLSADDK PDSESPIEKVLSPLRSPPLIGSESAYESFL GSESAYESFLSADDKASGRGAESPFEEKSG R S P D K A 2 0 0 2 0 0 2 1 0 1 2 1 0 1 2 5 0 0 1 0 0 0 20 0 2111.9899 P46821 P46821 1400 1419 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 3.5453E-70 228.73 By MS/MS 1 0 1 1 9805900 0 0 9805900 12451 834 13103 54070 45184 45184 1 0 0 2112800 SPPPELTDTATSTK EESMTIDKNTKIPCKSPPPELTDTATSTKR KSPPPELTDTATSTKRCPKTRPRKEVKEEL K S P T K R 1 0 0 1 0 0 1 0 0 0 1 1 0 0 3 2 4 0 0 0 0 0 14 0 1443.7093 P46013 P46013 2588 2601 MKI67 Antigen KI-67 yes yes 2 0.00051206 145.28 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 18364000 0 3919600 14444000 12452 821 13104 54071;54072;54073 45185;45186;45187 45186 3 0 1915900 3151200 SPPPGMGLNQNR RRGGGGGRGGLHDFRSPPPGMGLNQNRGPM DFRSPPPGMGLNQNRGPMGPGPGQSGPKPP R S P N R G 0 1 2 0 0 1 0 2 0 0 1 0 1 0 3 1 0 0 0 0 0 0 12 0 1266.6139 P23246 P23246 33 44 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 3.5587E-12 180.45 By MS/MS By MS/MS By MS/MS 2.45 0.988 2 4 3 2 2 4 5 194320000 18217000 64345000 111760000 12453 638 13105 54074;54075;54076;54077;54078;54079;54080;54081;54082;54083;54084 45188;45189;45190;45191;45192;45193;45194;45195;45196;45197;45198;45199;45200;45201;45202;45203 45202 16 21949000 28556000 22982000 SPPSTGSTYGSSQKEESAASGGAAYTK GSGSLSPSKKSPVGKSPPSTGSTYGSSQKE QKEESAASGGAAYTKRYLEEQKTENGKDKE K S P T K R 4 0 0 0 0 1 2 4 0 0 0 2 0 0 2 7 3 0 2 0 0 0 27 1 2605.178 Q9Y2W1 Q9Y2W1 320 346 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 3.2969E-38 132.28 By MS/MS 2 0 1 1 4171100 0 4171100 0 12454 2252 13106 54085 45204 45204 1 0 1878300 0 SPQELLCGASLISDR AEVGLSPWQVMLFRKSPQELLCGASLISDR SPQELLCGASLISDRWVLTAAHCLLYPPWD K S P D R W 1 1 0 1 1 1 1 1 0 1 3 0 0 0 1 3 0 0 0 0 0 0 15 0 1644.8141 CON__P00735;P00734 CON__P00735 388 402 F2 Prothrombin;Activation peptide fragment 1;Activation peptide fragment 2;Thrombin light chain;Thrombin heavy chain yes no 2 0.0032449 87.216 By matching By MS/MS 7 0 2 1 1 7653700 0 1075600 6578100 + 12455 31 13107 54086;54087 45205 45205 1 0 617620 1167200 SPQILVPTLFNLLSR VTLILELLQHKKKLRSPQILVPTLFNLLSR SPQILVPTLFNLLSRCLEPLPQEQGNMEYT R S P S R C 0 1 1 0 0 1 0 0 0 1 4 0 0 1 2 2 1 0 0 1 0 0 15 0 1696.9876 Q9H583 Q9H583 1222 1236 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2;3 2.2284E-17 188.29 By MS/MS By MS/MS 1.5 0.5 4 4 4 4 22478000 0 4290800 18187000 12456 1984 13108 54088;54089;54090;54091;54092;54093;54094;54095 45206;45207;45208;45209;45210;45211 45210 5 0 2038200 3933800 SPQNQYPAELMR RLMMEQRSRDPGMVRSPQNQYPAELMRRFE MVRSPQNQYPAELMRRFELYFQGPSSNKPR R S P M R R 1 1 1 0 0 2 1 0 0 0 1 0 1 0 2 1 0 0 1 0 0 0 12 0 1432.6769 P33993 P33993 121 132 MCM7 DNA replication licensing factor MCM7 yes yes 2 1.5522E-25 202.56 By MS/MS 2.67 0.471 1 2 3 21351000 0 21351000 0 12457 733 13109;13110 54096;54097;54098 45212;45213 45213 333 2 0 9179800 0 SPQPDPVDTPASTK DKPTTDEKTTKIACKSPQPDPVDTPASTKQ KSPQPDPVDTPASTKQRPKRNLRKADVEEE K S P T K Q 1 0 0 2 0 1 0 0 0 0 0 1 0 0 4 2 2 0 0 1 0 0 14 0 1438.694 P46013 P46013 2344 2357 MKI67 Antigen KI-67 yes yes 2 0.0039334 91.961 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 6796600 0 4003200 2793500 12458 821 13111 54099;54100;54101 45214;45215;45216 45214 3 0 1898500 601900 SPQPDPVGTPTIFKPQSK DKPTTHEKTTKIACRSPQPDPVGTPTIFKP PDPVGTPTIFKPQSKRSLRKADVEEESLAL R S P S K R 0 0 0 1 0 2 0 1 0 1 0 2 0 1 5 2 2 0 0 1 0 0 18 1 1923.0102 P46013 P46013 2223 2240 MKI67 Antigen KI-67 yes yes 3 0.00027326 87.125 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38989000 0 13598000 25391000 12459 821 13112 54102;54103;54104;54105;54106 45217;45218;45219;45220 45220 4 0 6344000 5463400 SPQTPELVEALAFR FSPVIIKEWAAYKGKSPQTPELVEALAFRE KSPQTPELVEALAFREWTCPNLKRLWLGKA K S P F R E 2 1 0 0 0 1 2 0 0 0 2 0 0 1 2 1 1 0 0 1 0 0 14 0 1556.8199 Q9NZB2 Q9NZB2 652 665 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 yes yes 2 0.00072648 114.86 By MS/MS By matching 2.5 0.5 1 1 1 1 6341700 0 4108500 2233200 12460 2101 13113 54107;54108 45221 45221 1 0 1850100 433130 SPQVKPASTMGMGPLGK ALAAMNAAQVKPLGKSPQVKPASTMGMGPL QVKPASTMGMGPLGKGAGPVPPGKVGPATP K S P G K G 1 0 0 0 0 1 0 3 0 0 1 2 2 0 3 2 1 0 0 1 0 0 17 1 1684.864 Q13428 Q13428 503 519 TCOF1 Treacle protein yes yes 2 2.2649E-26 200.76 By MS/MS 1.5 0.5 1 1 2 25660000 0 0 25660000 12461 1247 13114 54109;54110 45222;45223 45222 2 0 0 5641600 SPSDEYKDNLHQVSK MFFGKNKVMMVALGRSPSDEYKDNLHQVSK SPSDEYKDNLHQVSKRLRGEVGLLFTNRTK R S P S K R 0 0 1 2 0 1 1 0 1 0 1 2 0 0 1 3 0 0 1 1 0 0 15 1 1745.822 Q9UKD2 Q9UKD2 80 94 MRTO4 mRNA turnover protein 4 homolog yes yes 2;3;4 2.9792E-58 237.41 By MS/MS By MS/MS 6.7 0.64 4 5 1 4 6 273160000 0 28902000 244260000 12462 2177 13115 54111;54112;54113;54114;54115;54116;54117;54118;54119;54120 45224;45225;45226;45227;45228;45229;45230;45231;45232 45232 9 0 13256000 40424000 SPSDLHISPLAK KMMGGAGPGSSLEARSPSDLHISPLAKKLP EARSPSDLHISPLAKKLPPPPGSPLGHSPT R S P A K K 1 0 0 1 0 0 0 0 1 1 2 1 0 0 2 3 0 0 0 0 0 0 12 0 1263.6823 O95785 O95785 1127 1138 WIZ Protein Wiz yes yes 2;3 1.1408E-18 141.88 By matching By MS/MS By MS/MS 1.88 0.599 2 5 1 1 2 5 51159000 2028200 8998100 40133000 12463 340 13116 54121;54122;54123;54124;54125;54126;54127;54128 45233;45234;45235;45236;45237 45234 4 2443700 4052000 8759200 SPSDSGYSYETIGK DVGGYYYEKIERTTKSPSDSGYSYETIGKT KSPSDSGYSYETIGKTTKTPEDGDYSYEII K S P G K T 0 0 0 1 0 0 1 2 0 1 0 1 0 0 1 4 1 0 2 0 0 0 14 0 1489.6573 P46821 P46821 1915 1928 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00062528 142.1 By MS/MS 1 0 1 1 4527200 0 4527200 0 12464 834 13117 54129 45238 45238 1 0 2212800 0 SPSDSSTASTPVAEQIER LDSHRRMAPTPIPTRSPSDSSTASTPVAEQ DSSTASTPVAEQIERALDEVTSSQPPPLPP R S P E R A 2 1 0 1 0 1 2 0 0 1 0 0 0 0 2 5 2 0 0 1 0 0 18 0 1860.8701 Q16643 Q16643 337 354 DBN1 Drebrin yes yes 2 3.6178E-181 302.28 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 75646000 0 33827000 41819000 12465 1395 13118 54130;54131;54132;54133;54134;54135 45239;45240;45241;45242;45243 45240 5 0 15309000 8412200 SPSELFAQHIVTIVHHVK FRSIFQHIQSAQSQRSPSELFAQHIVTIVH ELFAQHIVTIVHHVKEHHFGSSGMTLHERF R S P V K E 1 0 0 0 0 1 1 0 3 2 1 1 0 1 1 2 1 0 0 3 0 0 18 0 2041.1109 Q9Y2W1 Q9Y2W1 622 639 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3;4 0.00022877 85.937 By MS/MS By MS/MS 2 1 2 3 1 1 5 159530000 0 6770700 152760000 12466 2252 13119 54136;54137;54138;54139;54140;54141 45244;45245;45246;45247;45248;45249;45250;45251 45246 8 0 3048900 33125000 SPSGSAFGSQENLR RGQLGTYTIASPPERSPSGSAFGSQENLRW RSPSGSAFGSQENLRWRKDMTHWRQNTEKL R S P L R W 1 1 1 0 0 1 1 2 0 0 1 0 0 1 1 4 0 0 0 0 0 0 14 0 1435.6692 Q96N67 Q96N67 1430 1443 DOCK7 Dedicator of cytokinesis protein 7 yes yes 2 7.2974E-18 194.5 By MS/MS 1 0 1 1 4926100 0 4926100 0 12467 1814 13120 54142 45252 45252 1 0 2407800 0 SPSKPLPEVTDEYKNDVK AELMEISEDKTKIRRSPSKPLPEVTDEYKN KPLPEVTDEYKNDVKNRSVYIKGFPTDATL R S P V K N 0 0 1 2 0 0 2 0 0 0 1 3 0 0 3 2 1 0 1 2 0 0 18 2 2045.0317 P05455 P05455 92 109 SSB Lupus La protein yes yes 3 1.0223E-05 100.82 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 34712000 0 13382000 21330000 12468 434 13121 54143;54144;54145 45253;45254 45253 2 0 3449400 3159500 SPSLLQSGAK SALARKKARLSLVIRSPSLLQSGAKKKAQV SLVIRSPSLLQSGAKKKAQVRKAGKP____ R S P A K K 1 0 0 0 0 1 0 1 0 0 2 1 0 0 1 3 0 0 0 0 0 0 10 0 986.53966 Q9BQG0 Q9BQG0 1308 1317 MYBBP1A Myb-binding protein 1A yes yes 2 0.044781 74.173 By MS/MS 2.5 0.5 1 1 2 5462900 0 5462900 0 12469 1885 13122 54146;54147 45255 45255 1 0 2432700 0 SPSPSSPAAVNHHSSSDISPVSNESTSSSPGK SPSAPKIPSWQIPVKSPSPSSPAAVNHHSS ISPVSNESTSSSPGKEGHSPEGSTVTYHLL K S P G K E 2 0 2 1 0 0 1 1 2 1 0 1 0 0 5 13 1 0 0 2 0 0 32 0 3120.4232 O75381 O75381 247 278 PEX14 Peroxisomal membrane protein PEX14 yes yes 4 0.00065302 36.062 By MS/MS 5 0 1 1 2015700 0 2015700 0 12470 255 13123 54148 45256 45256 1 0 519580 0 SPSSKPSLAVAVDSAPEVAVK RCPLPAADSLMHLTKSPSSKPSLAVAVDSA SLAVAVDSAPEVAVKEDLETGVHLDPAVKE K S P V K E 4 0 0 1 0 0 1 0 0 0 1 2 0 0 3 5 0 0 0 4 0 0 21 1 2038.0946 O60508 O60508 43 63 CDC40 Pre-mRNA-processing factor 17 yes yes 3 0.02149 38.724 By MS/MS 3 0 1 1 4338200 0 4338200 0 12471 228 13124 54149 45257 45257 1 0 1849400 0 SPSSLLIANLHLQ NLIFKDGVLSEWSGRSPSSLLIANLHLQ__ GRSPSSLLIANLHLQ_______________ R S P L Q - 1 0 1 0 0 1 0 0 1 1 4 0 0 0 1 3 0 0 0 0 0 0 13 0 1391.7773 Q658Y4 Q658Y4 826 838 FAM91A1 Protein FAM91A1 yes yes 2 0.00033319 128.35 By MS/MS By MS/MS By matching 2.33 0.471 2 1 1 1 1 12649000 5876300 4580700 2192300 12472 1463 13125 54150;54151;54152 45258;45259 45258 1 7080300 2062700 425210 SPSTTYLHTPTPSEDAAIPSK HCRRGLLSNHTGSPRSPSTTYLHTPTPSED LHTPTPSEDAAIPSKSRLKRLISENSVYEK R S P S K S 2 0 0 1 0 0 1 0 1 1 1 1 0 0 4 4 4 0 1 0 0 0 21 0 2199.0695 Q13111 Q13111 775 795 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3 0.00039767 66.644 By MS/MS By MS/MS 2 0 2 1 1 27832000 0 9032100 18800000 12473 1220 13126 54153;54154 45260;45261 45261 2 0 4067300 4248400 SPTLYGISHDDLK VNWLGYAYLYIRMLRSPTLYGISHDDLKGD LRSPTLYGISHDDLKGDPLLDQRRLDLVHT R S P L K G 0 0 0 2 0 0 0 1 1 1 2 1 0 0 1 2 1 0 1 0 0 0 13 0 1444.7198 O75643 O75643 932 944 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 3.9895E-13 185.18 By matching By MS/MS By MS/MS 1.29 0.452 5 2 2 3 2 108560000 4009300 41747000 62800000 12474 277 13127 54155;54156;54157;54158;54159;54160;54161 45262;45263;45264 45264 3 4009300 20312000 13603000 SPTLYGISHDDLKGDPLLDQR VNWLGYAYLYIRMLRSPTLYGISHDDLKGD ISHDDLKGDPLLDQRRLDLVHTAALMLDKN R S P Q R R 0 1 0 4 0 1 0 2 1 1 4 1 0 0 2 2 1 0 1 0 0 0 21 1 2339.1757 O75643 O75643 932 952 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3;4 3.723E-06 88.09 By MS/MS By MS/MS 1 0 2 1 1 35331000 0 4510600 30821000 12475 277 13128 54162;54163 45265;45266 45266 2 0 2204700 6640900 SPTPPLFSLPEAR ______________________________ ______________________________ M S P A R T 1 1 0 0 0 0 1 0 0 0 2 0 0 1 4 2 1 0 0 0 0 0 13 0 1410.7507 Q96FV9 Q96FV9 2 14 THOC1 THO complex subunit 1 yes yes 2 0.0073461 93.843 By MS/MS 3 0 1 1 7945600 0 7945600 0 12476 1783 13129 54164 45267 45267 1 0 3387200 0 SPTWFGIPR EFLYVEGLPEGIPFRSPTWFGIPRLERIVR EGIPFRSPTWFGIPRLERIVRGSNKIKFVV R S P P R L 0 1 0 0 0 0 0 1 0 1 0 0 0 1 2 1 1 1 0 0 0 0 9 0 1059.5502 P78347 P78347 620 628 GTF2I General transcription factor II-I yes yes 2 0.0019465 106.04 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 15352000 0 4408500 10944000 12477 1085 13130 54165;54166;54167 45268;45269;45270 45270 3 0 1879300 2122500 SPVEVAQDVLAAVGK GSRYGVMDTTTAQGRSPVEVAQDVLAAVGK SPVEVAQDVLAAVGKKKKDVILADLLPSLA R S P G K K 3 0 0 1 0 1 1 1 0 0 1 1 0 0 1 1 0 0 0 4 0 0 15 0 1481.809 Q6IAN0 Q6IAN0 268 282 DHRS7B Dehydrogenase/reductase SDR family member 7B yes yes 2 0.00029606 132.59 By MS/MS By MS/MS 6 0 2 1 1 9189500 0 983110 8206400 12478 1476 13131 54168;54169 45271;45272 45272 2 0 340320 1227800 SPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDAEKK PTEAAAAAPQDPAPKSPVGSGAPQAAAPAP ASLATAAGSEDAEKKVLATKVLGTVKWFNV K S P K K V 20 0 1 2 0 1 2 7 1 0 1 2 0 0 6 4 3 0 0 2 0 0 52 1 4506.2011 P16989 P16989 34 85 YBX3 Y-box-binding protein 3 yes yes 4 9.9774E-134 163.53 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 4 1 80053000 0 35393000 44659000 12479 581 13132 54170;54171;54172;54173;54174 45273;45274;45275 45273 3 0 11336000 7294300 SPVGVQPILNEHTFCAGMSK RHYEGSTVPEKKTPKSPVGVQPILNEHTFC QPILNEHTFCAGMSKYQEDTCYGDAGSAFA K S P S K Y 1 0 1 0 1 1 1 2 1 1 1 1 1 1 2 2 1 0 0 2 0 0 20 0 2171.0503 P00738 P00738 326 345 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes yes 3 2.0947E-11 117.84 By MS/MS 9 0 1 1 10088000 10088000 0 0 12480 364 13133 54175 45276 45276 1 5662600 0 0 SPVPSAFSDQSR APSQSLLPPAQDQPRSPVPSAFSDQSRCLI QPRSPVPSAFSDQSRCLIAQTTPVAGSQSL R S P S R C 1 1 0 1 0 1 0 0 0 0 0 0 0 1 2 4 0 0 0 1 0 0 12 0 1276.6048 Q9UQ35 Q9UQ35 2449 2460 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0013367 114.4 By MS/MS By MS/MS 3.33 2.36 2 1 1 1 1 3 3 55608000 0 8530500 47077000 12481 2219 13134 54176;54177;54178;54179;54180;54181 45277;45278;45279 45279 3 0 3963100 9601100 SPVTFLSDLR PPQFKKDLDSYLKTRSPVTFLSDLRSNLQV YLKTRSPVTFLSDLRSNLQVSNEPGNRYNL R S P L R S 0 1 0 1 0 0 0 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 10 0 1133.6081 A5YKK6 A5YKK6 2188 2197 CNOT1 CCR4-NOT transcription complex subunit 1 yes yes 2 0.036878 76.221 By MS/MS 1 0 1 1 1543900 0 1543900 0 12482 10 13135 54182 45280 45280 1 0 754640 0 SPWSNKYDPPLEDGAMPSAR DYLLCDYNRDGDSYRSPWSNKYDPPLEDGA KYDPPLEDGAMPSARLRKLEVEANNAFDQY R S P A R L 2 1 1 2 0 0 1 1 0 0 1 1 1 0 4 3 0 1 1 0 0 0 20 1 2217.0161 P47756 P47756 73 92 CAPZB F-actin-capping protein subunit beta yes yes 3 5.5375E-14 134.29 By MS/MS By matching 6 0 2 1 1 22318000 0 13045000 9272800 12483 837 13136 54183;54184 45281 45281 1 0 4515800 1387300 SPYLYPLYGLGELPQGFAR NRIKLYSESLARYGKSPYLYPLYGLGELPQ YPLYGLGELPQGFARLSAIYGGTYMLNKPI K S P A R L 1 1 0 0 0 1 1 3 0 0 4 0 0 1 3 1 0 0 3 0 0 0 19 0 2140.0993 P50395;P60028;P31150 P50395 222 240 GDI2;GDI1 Rab GDP dissociation inhibitor beta;Rab GDP dissociation inhibitor alpha yes no 2;3 1.0454E-09 155.66 By MS/MS 5 0 2 2 8388900 0 8388900 0 12484 877 13137 54185;54186 45282;45283 45282 2 0 2162400 0 SPYNYLQVAYFK AHSLSEEMELEFRKRSPYNYLQVAYFKINK RKRSPYNYLQVAYFKINKLEKAVAAAHTFF R S P F K I 1 0 1 0 0 1 0 0 0 0 1 1 0 1 1 1 0 0 3 1 0 0 12 0 1491.7398 Q32P28 Q32P28 144 155 LEPRE1 Prolyl 3-hydroxylase 1 yes yes 2 0.0012859 114.97 By MS/MS 2 0 1 1 1301000 0 1301000 0 12485 1409 13138 54187 45284 45284 1 0 585880 0 SPYQEFTDHLVK SYLTPDLWKETVFTKSPYQEFTDHLVKTHT FTKSPYQEFTDHLVKTHTRVSVQRTQAPAV K S P V K T 0 0 0 1 0 1 1 0 1 0 1 1 0 1 1 1 1 0 1 1 0 0 12 0 1462.7092 P15880 P15880 264 275 RPS2 40S ribosomal protein S2 yes yes 3 0.013741 67.118 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 272120000 0 82908000 189210000 12486 571 13139 54188;54189;54190 45285;45286;45287;45288 45288 4 0 28226000 28309000 SPYTLDSLYWSVKPASSSFGSEAK NSLVQEGSEASPIGKSPYTLDSLYWSVKPA WSVKPASSSFGSEAKAQQQEEQGSVNDVKE K S P A K A 2 0 0 1 0 0 1 1 0 0 2 2 0 1 2 7 1 1 2 1 0 0 24 1 2606.254 Q9Y4W2 Q9Y4W2 528 551 LAS1L Ribosomal biogenesis protein LAS1L yes yes 3 3.5821E-15 110.9 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 56279000 0 23579000 32701000 12487 2289 13140 54191;54192;54193;54194 45289;45290;45291;45292 45290 4 0 10376000 6594700 SQAEPLSGNKEPLADTSSNQQK GPKPAFGQQHQQQPKSQAEPLSGNKEPLAD GNKEPLADTSSNQQKNFKMQSAAFSIAADV K S Q Q K N 2 0 2 1 0 3 2 1 0 0 2 2 0 0 2 4 1 0 0 0 0 0 22 1 2328.1193 P49750 P49750 854 875 YLPM1 YLP motif-containing protein 1 yes yes 3 2.4161E-19 122.01 By MS/MS By MS/MS 1 0 2 1 1 28825000 0 11107000 17717000 12488 865 13141 54195;54196 45293;45294 45293 2 0 5429100 3817500 SQAFIEMETR EPYGKIKNYILMRMKSQAFIEMETREDAMA LMRMKSQAFIEMETREDAMAMVDHCLKKAL K S Q T R E 1 1 0 0 0 1 2 0 0 1 0 0 1 1 0 1 1 0 0 0 0 0 10 0 1210.5652 P43243 P43243 533 542 MATR3 Matrin-3 yes yes 2 1.2842E-06 153.24 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 4 1 130380000 0 36063000 94312000 12489 812 13142 54197;54198;54199;54200;54201 45295;45296;45297 45296 3 0 15736000 21313000 SQAPEKPLVISQMGSK SQNWKALQEWLLKQKSQAPEKPLVISQMGS QAPEKPLVISQMGSKKKPKIIQQNKKETSP K S Q S K K 1 0 0 0 0 2 1 1 0 1 1 2 1 0 2 3 0 0 0 1 0 0 16 1 1698.8975 Q9GZR2 Q9GZR2 82 97 REXO4 RNA exonuclease 4 yes yes 2;3 0.00047268 143.08 By matching By MS/MS 3.67 0.471 1 2 1 2 32603000 0 1040600 31563000 12490 1951 13143 54202;54203;54204 45298;45299 45299 2 0 443600 5155300 SQAPGQPGASQWGSR GKKVEVKRAEPRDSKSQAPGQPGASQWGSR SQAPGQPGASQWGSRVVPNAANGWAGQPPP K S Q S R V 2 1 0 0 0 3 0 3 0 0 0 0 0 0 2 3 0 1 0 0 0 0 15 0 1512.707 Q96EP5 Q96EP5 195 209 DAZAP1 DAZ-associated protein 1 yes yes 2 6.7926E-18 193.62 By MS/MS By MS/MS 5 1.22 1 2 2 2 1 5 3 59634000 0 36170000 23464000 12491 1776 13144 54205;54206;54207;54208;54209;54210;54211;54212 45300;45301;45302;45303;45304;45305;45306 45305 7 0 12851000 3487300 SQAPLESSLDSLGDVFLDSGRK VESLESLYFTPIPARSQAPLESSLDSLGDV SLDSLGDVFLDSGRKTRSARRRTTQIINIT R S Q R K T 1 1 0 3 0 1 1 2 0 0 4 1 0 1 1 5 0 0 0 1 0 0 22 1 2320.1547 Q14980 Q14980 1782 1803 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 2.2333E-09 91.729 By MS/MS 1 0 1 1 23849000 0 0 23849000 12492 1327 13145 54213 45307 45307 1 0 0 5138700 SQASTTVDINTQVEK SVEADKSSPGIHLERSQASTTVDINTQVEK SQASTTVDINTQVEKEVPPGSAIIHIKKHQ R S Q E K E 1 0 1 1 0 2 1 0 0 1 0 1 0 0 0 2 3 0 0 2 0 0 15 0 1619.8002 Q14676 Q14676 513 527 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 3.6849E-09 120.87 By MS/MS By MS/MS 1 0 2 1 1 4054500 0 0 4054500 12493 1310 13146 54214;54215 45308;45309 45308 2 0 0 873620 SQAWQPLVEGSENK SSIENSDSPVRSILKSQAWQPLVEGSENKG KSQAWQPLVEGSENKGMLREYGETESKRAL K S Q N K G 1 0 1 0 0 2 2 1 0 0 1 1 0 0 1 2 0 1 0 1 0 0 14 0 1571.758 O95425 O95425 928 941 SVIL Supervillin yes yes 2 0.00058749 117.95 By MS/MS By matching 1.5 0.5 1 1 1 1 8879400 0 3528700 5350700 12494 325 13147 54216;54217 45310 45310 1 0 1724800 1209200 SQDFGNLFSFPSYSQK GKSKATPEKSLHDKKSQDFGNLFSFPSYSQ QDFGNLFSFPSYSQKSEDDSAKFDSNEEDS K S Q Q K S 0 0 1 1 0 2 0 1 0 0 1 1 0 3 1 4 0 0 1 0 0 0 16 0 1850.8475 Q02880 Q02880 1441 1456 TOP2B DNA topoisomerase 2-beta yes yes 2 4.3452E-05 135.65 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 16878000 0 4648500 12230000 12495 1150 13148 54218;54219;54220 45311;45312 45312 2 0 2187800 2635100 SQDIYLR IRHNKDRKVRRKEPKSQDIYLRLLVKLYRF KVRRKEPKSQDIYLRLLVKLYRFLARRTNS K S Q L R L 0 1 0 1 0 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 7 0 893.46068 Q07020 Q07020 20 26 RPL18 60S ribosomal protein L18 yes yes 2 0.019131 104.11 By matching By MS/MS By MS/MS 6.75 0.433 1 3 1 1 2 182530000 8424400 59170000 114940000 12496 1174 13149 54221;54222;54223;54224 45313;45314;45315 45313 3 18156000 33976000 20395000 SQDLESVQEVGGSYWQR GTVQQKRRQKMQQKKSQDLESVQEVGGSYW DLESVQEVGGSYWQRVTLILELLQHKKKLR K S Q Q R V 0 1 0 1 0 3 2 2 0 0 1 0 0 0 0 3 0 1 1 2 0 0 17 0 1966.9021 Q9H583 Q9H583 1190 1206 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 1.3457E-36 208.27 By MS/MS 1 0 1 1 3266600 0 3266600 0 12497 1984 13150 54225 45316 45316 1 0 1596700 0 SQDVELWEGEVVK VDNTFAEEFTTQNQKSQDVELWEGEVVKEL QKSQDVELWEGEVVKELSVEEQIKRNRYYD K S Q V K E 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 1 0 1 0 3 0 0 13 0 1516.7409 Q9UHB6 Q9UHB6 726 738 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 0.0077191 92.792 By MS/MS 2 0 1 1 18710000 0 0 18710000 12498 2150 13151 54226 45317 45317 1 0 0 4228100 SQEEPKDTFEHDPSESIDEFNK KAEGEPQEESPLKSKSQEEPKDTFEHDPSE TFEHDPSESIDEFNKSSATSGDIWPGLSAY K S Q N K S 0 0 1 3 0 1 5 0 1 1 0 2 0 2 2 3 1 0 0 0 0 0 22 1 2607.1249 Q9NYF8 Q9NYF8 183 204 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3;4 6.5572E-07 83.204 By MS/MS 2 0 2 2 33423000 0 0 33423000 12499 2097 13152 54227;54228 45318;45319 45318 2 0 0 7552900 SQEQEVLER RVKPEEMMDERPKTRSQEQEVLERGGRFTR ERPKTRSQEQEVLERGGRFTRSQEEARKSH R S Q E R G 0 1 0 0 0 2 3 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 9 0 1116.5411 Q9UKV3 Q9UKV3 328 336 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.0025687 103.42 By MS/MS 1 0 1 1 10798000 0 0 10798000 12500 2184 13153 54229 45320 45320 1 0 0 2326500 SQEQILEILR GVQGPLNVSLSEEGKSQEQILEILRFIRRE SEEGKSQEQILEILRFIRREKEIAETRFEV K S Q L R F 0 1 0 0 0 2 2 0 0 2 2 0 0 0 0 1 0 0 0 0 0 0 10 0 1227.6823 P12270 P12270 1192 1201 TPR Nucleoprotein TPR yes yes 2 0.044417 74.267 By MS/MS 1 0 1 1 2368800 0 2368800 0 12501 536 13154 54230 45321 45321 1 0 1157800 0 SQEQLAAELAEYTAK RAKEELERQAVDQIKSQEQLAAELAEYTAK SQEQLAAELAEYTAKIALLEEARRRKEDEV K S Q A K I 4 0 0 0 0 2 3 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 15 0 1650.8101 P15311 P15311 413 427 EZR Ezrin yes yes 2 0.0019229 91.62 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 23483000 4050700 2067100 17365000 12502 569 13155 54231;54232;54233;54234 45322;45323 45323 2 4673600 881210 3267500 SQESGYYDR GPSLNPVLDYDHGSRSQESGYYDRMDYEDD YDHGSRSQESGYYDRMDYEDDRLRDGERCR R S Q D R M 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 2 0 0 2 0 0 0 9 0 1103.452 P43243 P43243 208 216 MATR3 Matrin-3 yes yes 2 0.00055626 126.41 By MS/MS By MS/MS By matching 2.33 0.471 2 1 1 1 1 22362000 1351100 15161000 5850200 12503 812 13156 54235;54236;54237 45324;45325 45325 2 1628000 6827000 1134700 SQGGEPTYNVAVGR SLYVDGDCTMDIRTKSQGGEPTYNVAVGRA KSQGGEPTYNVAVGRAGRVLVFVMGKEGVH K S Q G R A 1 1 1 0 0 1 1 3 0 0 0 0 0 0 1 1 1 0 1 2 0 0 14 0 1433.6899 P35080 P35080 92 105 PFN2 Profilin-2 yes yes 2 0.0043539 89.805 By MS/MS 9 0 1 1 1439600 0 1439600 0 12504 738 13157 54238 45326 45326 1 0 1152800 0 SQGPLEVAEAAVSQSSGLAAK AGGKEFLETVKELRKSQGPLEVAEAAVSQS VAEAAVSQSSGLAAKFVIHCHIPQWGSDKC K S Q A K F 5 0 0 0 0 2 2 2 0 0 2 1 0 0 1 4 0 0 0 2 0 0 21 0 1999.0222 Q9P0M6 Q9P0M6 251 271 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 2.0715E-14 137.73 By MS/MS By MS/MS 5.6 0.8 3 1 1 1 4 53462000 0 9760100 43702000 12505 2117 13158 54239;54240;54241;54242;54243 45327;45328;45329;45330;45331;45332;45333;45334 45329 8 0 2515900 6225700 SQHASETFHHSSNWLR PWQDPDSKEHSVSNKSQHASETFHHSSNWL QHASETFHHSSNWLRNPFKVLDKNQEPALW K S Q L R N 1 1 1 0 0 1 1 0 3 0 1 0 0 1 0 4 1 1 0 0 0 0 16 0 1922.8772 Q9UNY4 Q9UNY4 108 123 TTF2 Transcription termination factor 2 yes yes 4 0.0038129 63.682 By MS/MS 1.5 0.5 1 1 2 8125300 0 0 8125300 12506 2213 13159 54244;54245 45335 45335 1 0 0 1805300 SQHLHEVLSR KQFPFLASNYEVIMKSQHLHEVLSRADPKK EVIMKSQHLHEVLSRADPKKALHHFRAIKK K S Q S R A 0 1 0 0 0 1 1 0 2 0 2 0 0 0 0 2 0 0 0 1 0 0 10 0 1204.6313 O95602 O95602 1050 1059 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 3 0.046548 48.822 By MS/MS By matching 1.5 0.5 1 1 1 1 4551400 0 3916500 634830 12507 330 13160 54246;54247 45336 45336 1 0 1914300 143460 SQHQEDPNNTSLLTNKPALLR WACFNRYYGAISKLKSQHQEDPNNTSLLTN PNNTSLLTNKPALLRSLFTVGALCRHFDFD K S Q L R S 1 1 3 1 0 2 1 0 1 0 4 1 0 0 2 2 2 0 0 0 0 0 21 1 2375.2193 Q6KC79 Q6KC79 2122 2142 NIPBL Nipped-B-like protein yes yes 4 2.9792E-08 105.32 By MS/MS By MS/MS 1 0 2 1 1 36970000 0 7831500 29139000 12508 1480 13161 54248;54249 45337;45338 45337 2 0 3827900 6278400 SQIFSTASDNQPTVTIK MTKLIPRNTVVPTKKSQIFSTASDNQPTVT IFSTASDNQPTVTIKVYEGERPLTKDNHLL K S Q I K V 1 0 1 1 0 2 0 0 0 2 0 1 0 1 1 3 3 0 0 1 0 0 17 0 1835.9265 P11021 P11021 448 464 HSPA5 78 kDa glucose-regulated protein yes yes 2 2.1337E-48 225.79 By MS/MS By MS/MS By MS/MS 5 3.4 1 1 3 1 1 2 4 4 1 114480000 13901000 57890000 42686000 12509 516 13162 54250;54251;54252;54253;54254;54255;54256;54257;54258 45339;45340;45341;45342;45343 45341 5 16758000 29395000 8279100 SQIHDIVLVGGSTR LDPVEKALRDAKLDKSQIHDIVLVGGSTRI KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK K S Q T R I 0 1 0 1 0 1 0 2 1 2 1 0 0 0 0 2 1 0 0 2 0 0 14 0 1480.7998 P11142 P11142 329 342 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 6.297E-05 156 By MS/MS By MS/MS 4.06 2.1 1 3 5 2 2 1 2 1 10 7 710370000 0 382460000 327900000 12510 517 13163 54259;54260;54261;54262;54263;54264;54265;54266;54267;54268;54269;54270;54271;54272;54273;54274;54275 45344;45345;45346;45347;45348;45349;45350;45351;45352;45353 45345 10 0 161330000 63932000 SQILQMVGMRR GVYMGNLTAQQLDQRSQILQMVGMRRPQQG LDQRSQILQMVGMRRPQQGASGVVRVWDVK R S Q R R P 0 2 0 0 0 2 0 1 0 1 1 0 2 0 0 1 0 0 0 1 0 0 11 1 1317.7009 P07400 P07400 138 148 yes yes 2 0.014525 58.23 By MS/MS By matching By MS/MS 1.25 0.433 3 1 1 1 2 152080000 66252000 40901000 44931000 12511 461 13164 54276;54277;54278;54279 45354;45355 45354 173;174 0 66252000 19992000 9715200 SQISSVNSDVEALRR AHREEMERELEKSQRSQISSVNSDVEALRR SQISSVNSDVEALRRQYLEELQSVQRELEV R S Q R R Q 1 2 1 1 0 1 1 0 0 1 1 0 0 0 0 4 0 0 0 2 0 0 15 1 1659.854 Q6WCQ1 Q6WCQ1 793 807 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.0044525 64.04 By MS/MS 1.5 0.5 1 1 2 8473800 0 8473800 0 12512 1507 13165 54280;54281 45356;45357 45356 2 0 3815900 0 SQLDIIIHSLK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI RFSKSQLDIIIHSLKKCDISLQFFLPFSLG K S Q L K K 0 0 0 1 0 1 0 0 1 3 2 1 0 0 0 2 0 0 0 0 0 0 11 0 1265.7343 P13010 P13010 145 155 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 6.1162E-05 142.94 By matching By MS/MS By MS/MS 4.33 2.54 1 5 1 2 1 4 4 77505000 1832500 16815000 58857000 12513 542 13166 54282;54283;54284;54285;54286;54287;54288;54289;54290 45358;45359;45360;45361;45362;45363;45364 45363 7 2114300 8775900 11512000 SQLDIIIHSLKK RHIEIFTDLSSRFSKSQLDIIIHSLKKCDI FSKSQLDIIIHSLKKCDISLQFFLPFSLGK K S Q K K C 0 0 0 1 0 1 0 0 1 3 2 2 0 0 0 2 0 0 0 0 0 0 12 1 1393.8293 P13010 P13010 145 156 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 0.009509 71.888 By MS/MS 6 3 1 1 2 14254000 0 14254000 0 12514 542 13167 54291;54292 45365;45366 45365 2 0 6700800 0 SQLIDELADKFNR CNEEFTIFNRVDISRSQLIDELADKFNRLL SRSQLIDELADKFNRLLEDFLQEGEEPDED R S Q N R L 1 1 1 2 0 1 1 0 0 1 2 1 0 1 0 1 0 0 0 0 0 0 13 1 1547.7944 Q8N3U4 Q8N3U4 655 667 STAG2 Cohesin subunit SA-2 yes yes 2;3 0.00025444 160.18 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 70363000 0 4922300 65441000 12515 1603 13168 54293;54294;54295;54296;54297;54298 45367;45368;45369;45370;45371 45371 5 0 2216600 14544000 SQLIMQAEAEAASVR EAERYKLERLAEAEKSQLIMQAEAEAASVR SQLIMQAEAEAASVRMRGEAEAFAIGARAR K S Q V R M 4 1 0 0 0 2 2 0 0 1 1 0 1 0 0 2 0 0 0 1 0 0 15 0 1602.8036 O75955 O75955 303 317 FLOT1 Flotillin-1 yes yes 2 0.00032194 119.69 By MS/MS 5 0 1 1 4890200 0 0 4890200 12516 293 13169 54299 45372 45372 1 0 0 682090 SQLLAPPPPSAPPGNK SSQASPSRPSQGHSKSQLLAPPPPSAPPGN QLLAPPPPSAPPGNKTTVQQEPLESGAKNK K S Q N K T 2 0 1 0 0 1 0 1 0 0 2 1 0 0 6 2 0 0 0 0 0 0 16 0 1569.8515 P49750 P49750 242 257 YLPM1 YLP motif-containing protein 1 yes yes 2 0.039493 56.951 By MS/MS 1 0 1 1 3364900 0 3364900 0 12517 865 13170 54300 45373 45373 1 0 1644700 0 SQLLGSAHEVQR LNERWRSLQQLAEERSQLLGSAHEVQRFHR EERSQLLGSAHEVQRFHRDADETKEWIEEK R S Q Q R F 1 1 0 0 0 2 1 1 1 0 2 0 0 0 0 2 0 0 0 1 0 0 12 0 1323.6895 Q13813 Q13813 1226 1237 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 2.1822E-34 207.34 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 129140000 0 25849000 103290000 12518 1268 13171 54301;54302;54303;54304 45374;45375;45376;45377 45375 4 0 12634000 22290000 SQLLKDPQVLFAGYK FTMNKEDHTLGNIIKSQLLKDPQVLFAGYK SQLLKDPQVLFAGYKVPHPLEHKIIIRVQT K S Q Y K V 1 0 0 1 0 2 0 1 0 0 3 2 0 1 1 1 0 0 1 1 0 0 15 1 1705.9403 Q9H1A7;Q9GZM3;P52435 Q9H1A7 47 61 POLR2J3;POLR2J2;POLR2J DNA-directed RNA polymerase II subunit RPB11-b2;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-a yes no 2;3 0.0014834 101.6 By MS/MS By MS/MS 9.33 0.471 2 1 1 2 26685000 0 2310200 24374000 12519 908 13172 54305;54306;54307 45378;45379;45380 45379 3 0 11688000 7786200 SQLLSYIDR GNINICLMGDPGVAKSQLLSYIDRLAPRSQ DPGVAKSQLLSYIDRLAPRSQYTTGRGSSG K S Q D R L 0 1 0 1 0 1 0 0 0 1 2 0 0 0 0 2 0 0 1 0 0 0 9 0 1093.5768 P33993 P33993 388 396 MCM7 DNA replication licensing factor MCM7 yes yes 2 3.4288E-05 149.65 By MS/MS 3 0 1 1 10221000 0 0 10221000 12520 733 13173 54308 45381 45381 1 0 0 1982300 SQLPAEGDAGAEWAAAVLK EGTSLTASVVADVRKSQLPAEGDAGAEWAA AEGDAGAEWAAAVLKQERAHEVGAQGGPPV K S Q L K Q 6 0 0 1 0 1 2 2 0 0 2 1 0 0 1 1 0 1 0 1 0 0 19 0 1882.9425 Q14676 Q14676 598 616 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.025318 54.402 By MS/MS 1.5 0.5 1 1 2 11311000 0 0 11311000 12521 1310 13174 54309;54310 45382 45382 1 0 0 2476700 SQLQEQLAQLSR QEALEQQLPTLRHERSQLQEQLAQLSRQLS HERSQLQEQLAQLSRQLSGREQELEQARRE R S Q S R Q 1 1 0 0 0 4 1 0 0 0 3 0 0 0 0 2 0 0 0 0 0 0 12 0 1399.7419 Q5TZA2 Q5TZA2 830 841 CROCC Rootletin yes yes 2 0.0014006 113.69 By MS/MS 1 0 1 1 5595200 0 0 5595200 12522 1458 13175 54311 45383 45383 1 0 0 1205600 SQLQISNNR SEADSDKNATILELRSQLQISNNRTLELQG TILELRSQLQISNNRTLELQGLINDLQRER R S Q N R T 0 1 2 0 0 2 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 9 0 1058.5469 P15924 P15924 1754 1762 DSP Desmoplakin yes yes 2 0.0041163 98.629 By MS/MS 8.5 1.12 1 1 1 1 4 5936800 5936800 0 0 12523 572 13176 54312;54313;54314;54315 45384;45385 45385 2 7438300 0 0 SQMDGLIPGVEPR CIHSPVVNELMRGIRSQMDGLIPGVEPREM IRSQMDGLIPGVEPREMAAMCLGLAHSLSR R S Q P R E 0 1 0 1 0 1 1 2 0 1 1 0 1 0 2 1 0 0 0 1 0 0 13 0 1397.6973 Q9Y2X3 Q9Y2X3 121 133 NOP58 Nucleolar protein 58 yes yes 2 0.00041213 124.34 By MS/MS By MS/MS 3.44 0.831 1 4 3 1 4 5 197790000 0 59617000 138180000 12524 2254 13177;13178 54316;54317;54318;54319;54320;54321;54322;54323;54324 45386;45387;45388;45389;45390;45391;45392 45388 727 7 0 20653000 24089000 SQMTQEASDEAEDMK QEAQEEIMKLKDTLKSQMTQEASDEAEDMK SQMTQEASDEAEDMKEAMNRMIDELNKQVS K S Q M K E 2 0 0 2 0 2 3 0 0 0 0 1 2 0 0 2 1 0 0 0 0 0 15 0 1698.6713 Q9P0K7 Q9P0K7 617 631 RAI14 Ankycorbin yes yes 2 3.0994E-16 121.04 By MS/MS 2 0 1 1 0 0 0 0 12525 2115 13179 54325 45393 45393 1 0 0 0 SQMTQEASDEAEDMKEAMNR QEAQEEIMKLKDTLKSQMTQEASDEAEDMK EASDEAEDMKEAMNRMIDELNKQVSELSQL K S Q N R M 3 1 1 2 0 2 4 0 0 0 0 1 3 0 0 2 1 0 0 0 0 0 20 1 2299.9355 Q9P0K7 Q9P0K7 617 636 RAI14 Ankycorbin yes yes 3 0.00018849 73.315 By MS/MS 2 0 1 1 13116000 0 0 13116000 12526 2115 13180 54326 45394 45394 1 0 0 2963900 SQNFDILQSAISK VTEAVFHSLLVIPARSQNFDILQSAISKHL ARSQNFDILQSAISKHLVGLTVIPDSTAGC R S Q S K H 1 0 1 1 0 2 0 0 0 2 1 1 0 1 0 3 0 0 0 0 0 0 13 0 1449.7464 Q9NXF1 Q9NXF1 747 759 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.00028359 134.56 By matching By MS/MS By MS/MS 2 0 3 1 1 1 19963000 1161600 6984100 11818000 12527 2089 13181 54327;54328;54329 45395;45396 45395 2 1399600 3145100 2670600 SQNIVTDSSSLSAEAIR EIQGHQPRIDDIFERSQNIVTDSSSLSAEA NIVTDSSSLSAEAIRQRLADLKQLWGLLIE R S Q I R Q 2 1 1 1 0 1 1 0 0 2 1 0 0 0 0 5 1 0 0 1 0 0 17 0 1776.8854 Q01082 Q01082 1548 1564 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 1.4206E-111 270.21 By matching By MS/MS By MS/MS 1 0 3 1 1 1 75105000 1958300 42092000 31055000 12528 1128 13182 54330;54331;54332 45397;45398 45398 2 1958300 20574000 6691200 SQNTELASTASLLR LERISRLEEKVKTLKSQNTELASTASLLRE KSQNTELASTASLLREQVAQLKQKVLSHVN K S Q L R E 2 1 1 0 0 1 1 0 0 0 3 0 0 0 0 3 2 0 0 0 0 0 14 0 1489.7736 P17535 P17535 305 318 JUND Transcription factor jun-D yes yes 2 0.00039737 127.17 By matching By MS/MS 5 0.816 1 1 1 2 1 9468400 6173700 3294800 0 12529 585 13183 54333;54334;54335 45399 45399 1 4890500 1140500 0 SQNVMAAASIANIVK PLSVFGDRSTGETIRSQNVMAAASIANIVK SQNVMAAASIANIVKSSLGPVGLDKMLVDD R S Q V K S 4 0 2 0 0 1 0 0 0 2 0 1 1 0 0 2 0 0 0 2 0 0 15 0 1515.8079 P17987 P17987 19 33 TCP1 T-complex protein 1 subunit alpha yes yes 2 0.0049046 83.769 By matching By MS/MS By MS/MS 4 0 3 1 1 1 17695000 588950 12312000 4794900 12530 591 13184 54336;54337;54338 45400;45401 45400 2 459480 4085800 783160 SQPAILLLTAAR SQTFLEKHLNSSHPRSQPAILLLTAARDAE HPRSQPAILLLTAARDAEEALRCLSEQIAD R S Q A R D 3 1 0 0 0 1 0 0 0 1 3 0 0 0 1 1 1 0 0 0 0 0 12 0 1252.7503 Q5JTV8 Q5JTV8 405 416 TOR1AIP1 Torsin-1A-interacting protein 1 yes yes 2 0.061928 69.979 By matching By MS/MS 2.5 1.12 1 1 1 1 2 2 10012000 1855800 0 8156100 12531 1439 13185 54339;54340;54341;54342 45402 45402 1 2097100 0 1438400 SQPDMAIMAVNSFVK ELKKLVYLYLMNYAKSQPDMAIMAVNSFVK SQPDMAIMAVNSFVKDCEDPNPLIRALAVR K S Q V K D 2 0 1 1 0 1 0 0 0 1 0 1 2 1 1 2 0 0 0 2 0 0 15 0 1636.7953 P63010 P63010 79 93 AP2B1 AP-2 complex subunit beta yes yes 2 0.035523 63.76 By MS/MS 1.5 0.5 1 1 2 8250800 0 0 8250800 12532 1057 13186 54343;54344 45403 45403 1 0 0 1847900 SQPERDWVLNEFR MRRDGWPAMCIHGDKSQPERDWVLNEFRSG DKSQPERDWVLNEFRSGKAPILIATDVASR K S Q F R S 0 2 1 1 0 1 2 0 0 0 1 0 0 1 1 1 0 1 0 1 0 0 13 1 1674.8114 Q92841 Q92841 453 465 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 3 0.0034559 82.908 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 20603000 0 9677700 10925000 12533 1725 13187 54345;54346;54347;54348 45404;45405;45406 45406 3 0 3937300 2119000 SQPFVDHVFTFTILDNR ELLIQIFSTPRYHPKSQPFVDHVFTFTILD PFVDHVFTFTILDNRIWFRNFQIIEEDAAL K S Q N R I 0 1 1 2 0 1 0 0 1 1 1 0 0 3 1 1 2 0 0 2 0 0 17 0 2035.0163 Q8TDN6 Q8TDN6 198 214 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 2;3 1.8147E-06 122.78 By MS/MS By MS/MS 5 0 3 1 2 28174000 0 5531600 22643000 12534 1663 13188 54349;54350;54351 45407;45408;45409 45409 3 0 1425900 3158300 SQPMGLWR LNDLQFFRYNSKDRKSQPMGLWRQVEGMED YNSKDRKSQPMGLWRQVEGMEDWKQDSQLQ K S Q W R Q 0 1 0 0 0 1 0 1 0 0 1 0 1 0 1 1 0 1 0 0 0 0 8 0 973.48037 P25311 P25311 68 75 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 0.01354 89.427 By MS/MS By matching 6.62 3.24 1 1 1 1 1 1 2 7 1 153650000 151860000 0 1796400 12535 656 13189 54352;54353;54354;54355;54356;54357;54358;54359 45410;45411;45412;45413 45411 4 185410000 0 3928900 SQPVYIQYSNHR VTMVNYYTPITPHLRSQPVYIQYSNHRELK HLRSQPVYIQYSNHRELKTDNLPNQARAQA R S Q H R E 0 1 1 0 0 2 0 0 1 1 0 0 0 0 1 2 0 0 2 1 0 0 12 0 1490.7266 O95758 O95758 123 134 PTBP3 Polypyrimidine tract-binding protein 3 yes yes 2 0.0010576 117.52 By MS/MS By matching 4.67 0.471 1 2 2 1 16840000 0 11932000 4908300 12536 337 13190 54360;54361;54362 45414;45415 45414 2 0 3672500 684630 SQSSIVPEEEQAANKGEEK RQEEREKEAAEQAERSQSSIVPEEEQAANK IVPEEEQAANKGEEKKDDENIPMETEETHL R S Q E K K 2 0 1 0 0 2 5 1 0 1 0 2 0 0 1 3 0 0 0 1 0 0 19 1 2058.9706 Q969G3 Q969G3 314 332 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 3 4.8484E-05 95.365 By MS/MS 4.5 0.5 1 1 2 25138000 0 0 25138000 12537 1741 13191 54363;54364 45416;45417 45416 2 0 0 3976600 SQSVFSGNPSIWLK LKALDVADLQKELDKSQSVFSGNPSIWLKD KSQSVFSGNPSIWLKDLASYLNYKLQAPLS K S Q L K D 0 0 1 0 0 1 0 1 0 1 1 1 0 1 1 4 0 1 0 1 0 0 14 0 1548.7936 Q6NUQ4 Q6NUQ4 130 143 TMEM214 Transmembrane protein 214 yes yes 2 0.0027732 97.911 By MS/MS By MS/MS 3 0 2 1 1 12691000 0 3585600 9105800 12538 1481 13192 54365;54366 45418;45419 45418 2 0 1528500 1766100 SQVAELNDDDKDDEIVFK GPTPVCTPTFLERRKSQVAELNDDDKDDEI AELNDDDKDDEIVFKQPISCVKEEIQETQT K S Q F K Q 1 0 1 5 0 1 2 0 0 1 1 2 0 1 0 1 0 0 0 2 0 0 18 1 2078.9644 Q9BYG3 Q9BYG3 247 264 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2;3 1.5511E-07 145.61 By MS/MS 6 0 2 2 28729000 0 0 28729000 12539 1936 13193 54367;54368 45420;45421 45421 2 0 0 4298100 SQVEEELFSVR LQRLKAEATEAARQRSQVEEELFSVRVQME ARQRSQVEEELFSVRVQMEELSKLKARIEA R S Q V R V 0 1 0 0 0 1 3 0 0 0 1 0 0 1 0 2 0 0 0 2 0 0 11 0 1321.6514 Q15149 Q15149 2361 2371 PLEC Plectin yes yes 2 4.1342E-07 157.24 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 33154000 0 15091000 18063000 12540 1348 13194 54369;54370;54371 45422;45423 45422 2 0 7338600 3892000 SQVEQQQLITVEK EGKEMCVLRMTRARRSQVEQQQLITVEKAL RRSQVEQQQLITVEKALAILSQPTPSLVVD R S Q E K A 0 0 0 0 0 4 2 0 0 1 1 1 0 0 0 1 1 0 0 2 0 0 13 0 1528.8097 Q6PL18 Q6PL18 1302 1314 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.0011586 112.73 By MS/MS 1.5 0.5 1 1 2 14592000 0 0 14592000 12541 1498 13195 54372;54373 45424;45425 45424 2 0 0 3198300 SQVFSTAADGQTQVEIK FTKLINRNTTIPTKKSQVFSTAADGQTQVE VFSTAADGQTQVEIKVCQGEREMAGDNKLL K S Q I K V 2 0 0 1 0 3 1 1 0 1 0 1 0 1 0 2 2 0 0 2 0 0 17 0 1807.8952 P38646 P38646 469 485 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00085075 94.551 By MS/MS By MS/MS 3 0 2 1 1 9370800 0 4839000 4531800 12542 774 13196 54374;54375 45426;45427 45427 2 0 2062900 878960 SQVKPDSVTASQPPSK PASAMDIEFQQSVSKSQVKPDSVTASQPPS QVKPDSVTASQPPSKGPQAPAGYANVATHS K S Q S K G 1 0 0 1 0 2 0 0 0 0 0 2 0 0 3 4 1 0 0 2 0 0 16 1 1654.8526 Q96T58 Q96T58 2854 2869 SPEN Msx2-interacting protein yes yes 3 0.069474 33.872 By MS/MS 1 0 1 1 1622100 0 0 1622100 12543 1839 13197 54376 45428 45428 1 0 0 349500 SQVMDEATALQLR FRGLRKQITMEELVRSQVMDEATALQLREG VRSQVMDEATALQLREGLTSIEEVTKNLQK R S Q L R E 2 1 0 1 0 2 1 0 0 0 2 0 1 0 0 1 1 0 0 1 0 0 13 0 1460.7293 Q15149 Q15149 4037 4049 PLEC Plectin yes yes 2 6.5412E-25 202.96 By matching By MS/MS By MS/MS 1.71 0.7 3 3 1 1 3 3 27751000 1487500 13931000 12332000 12544 1348 13198;13199 54377;54378;54379;54380;54381;54382;54383 45429;45430;45431;45432;45433 45430 606 5 1792200 6662800 2655400 SQVQQLISLPMWMGLQLAR FLDHCFNSLEVDLIRSQVQQLISLPMWMGL QLISLPMWMGLQLARLELELKKTPKLRKFW R S Q A R L 1 1 0 0 0 4 0 1 0 1 4 0 2 0 1 2 0 1 0 1 0 0 19 0 2198.1704 O60306 O60306 164 182 AQR Intron-binding protein aquarius yes yes 2;3 8.5239E-05 89.468 By MS/MS 1.33 0.471 2 1 3 5161800 0 0 5161800 12545 225 13200 54384;54385;54386 45434;45435;45436 45434 3 0 0 1135900 SQYEQLAEQNR AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NNMRSQYEQLAEQNRKDAEAWFNEKSKELT R S Q N R K 1 1 1 0 0 3 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 11 0 1364.6321 P13645;CON__P13645 P13645 323 333 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 2.5847E-171 295.96 By MS/MS By MS/MS By MS/MS 5.75 2.92 5 4 5 6 6 4 5 5 6 7 24 11 18 7348600000 5520200000 192680000 1635700000 + 12546 56 13201 54387;54388;54389;54390;54391;54392;54393;54394;54395;54396;54397;54398;54399;54400;54401;54402;54403;54404;54405;54406;54407;54408;54409;54410;54411;54412;54413;54414;54415;54416;54417;54418;54419;54420;54421;54422;54423;54424;54425;54426;54427;54428;54429;54430;54431;54432;54433;54434;54435;54436;54437;54438;54439 45437;45438;45439;45440;45441;45442;45443;45444;45445;45446;45447;45448;45449;45450;45451;45452;45453;45454;45455;45456;45457;45458;45459;45460;45461;45462;45463;45464;45465;45466;45467;45468;45469;45470;45471;45472;45473;45474;45475;45476;45477;45478;45479;45480;45481;45482;45483;45484;45485;45486;45487;45488;45489;45490;45491 45438 55 4993000000 126950000 664440000 SQYEQLAEQNRK AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE NMRSQYEQLAEQNRKDAEAWFNEKSKELTT R S Q R K D 1 1 1 0 0 3 2 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 12 1 1492.727 P13645;CON__P13645 P13645 323 334 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 3.5999E-126 275.11 By MS/MS By MS/MS By MS/MS 5.6 2.96 9 7 8 8 6 8 9 7 8 10 41 15 24 21822000000 17167000000 839130000 3815700000 + 12547 56 13202 54440;54441;54442;54443;54444;54445;54446;54447;54448;54449;54450;54451;54452;54453;54454;54455;54456;54457;54458;54459;54460;54461;54462;54463;54464;54465;54466;54467;54468;54469;54470;54471;54472;54473;54474;54475;54476;54477;54478;54479;54480;54481;54482;54483;54484;54485;54486;54487;54488;54489;54490;54491;54492;54493;54494;54495;54496;54497;54498;54499;54500;54501;54502;54503;54504;54505;54506;54507;54508;54509;54510;54511;54512;54513;54514;54515;54516;54517;54518;54519 45492;45493;45494;45495;45496;45497;45498;45499;45500;45501;45502;45503;45504;45505;45506;45507;45508;45509;45510;45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524;45525;45526;45527;45528;45529;45530;45531;45532;45533;45534;45535;45536;45537;45538;45539;45540;45541;45542;45543;45544;45545;45546;45547;45548;45549;45550;45551;45552;45553;45554;45555;45556;45557;45558;45559;45560;45561;45562;45563;45564;45565;45566;45567;45568;45569;45570;45571;45572;45573;45574;45575;45576;45577;45578;45579;45580;45581 45505 90 18026000000 643680000 1659300000 SQYEQLAEQNRKDAEAWFNEK AAPGVDLTQLLNNMRSQYEQLAEQNRKDAE AEQNRKDAEAWFNEKSKELTTEIDNNIEQI R S Q E K S 3 1 2 1 0 3 4 0 0 0 1 2 0 1 0 1 0 1 1 0 0 0 21 2 2583.199 P13645;CON__P13645 P13645 323 343 KRT10 Keratin, type I cytoskeletal 10 yes no 3;4 1.7514E-23 184.7 By MS/MS 5.64 2.1 2 2 2 2 1 2 11 229510000 229510000 0 0 + 12548 56 13203 54520;54521;54522;54523;54524;54525;54526;54527;54528;54529;54530 45582;45583;45584;45585;45586;45587;45588;45589;45590;45591;45592 45586 11 171020000 0 0 SQYEVMAEQNR SAPGTDLAKILSDMRSQYEVMAEQNRKDAE SDMRSQYEVMAEQNRKDAEAWFTSRTEELN R S Q N R K 1 1 1 0 0 2 2 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 11 0 1353.5983 CON__P08727;P08727 CON__P08727 254 264 KRT19 Keratin, type I cytoskeletal 19 yes no 2 4.9184E-19 186.92 By MS/MS By MS/MS 5 1.2 1 1 3 1 1 1 6 126310000 0 10999000 115310000 + 12549 51 13204;13205 54531;54532;54533;54534;54535;54536;54537 45593;45594;45595 45594 35 3 0 2835300 16470000 SQYEVMAEQNRK SAPGTDLAKILSDMRSQYEVMAEQNRKDAE DMRSQYEVMAEQNRKDAEAWFTSRTEELNR R S Q R K D 1 1 1 0 0 2 2 0 0 0 0 1 1 0 0 1 0 0 1 1 0 0 12 1 1481.6933 CON__P08727;P08727 CON__P08727 254 265 KRT19 Keratin, type I cytoskeletal 19 yes no 2;3 6.9721E-26 205.59 By MS/MS By MS/MS 5 0 3 2 1 35742000 0 26629000 9112500 + 12550 51 13206 54538;54539;54540 45596;45597;45598 45598 3 0 6864200 1271000 SRAEAALEEESR AYHNSPAYLAYINAKSRAEAALEEESRQRQ NAKSRAEAALEEESRQRQSRMEKGEPYMSI K S R S R Q 3 2 0 0 0 0 4 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 12 1 1346.6426 Q969G3 Q969G3 147 158 SMARCE1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 yes yes 2 4.0727E-07 167.71 By MS/MS 4 0 1 1 3518300 0 0 3518300 12551 1741 13207 54541 45599 45599 1 0 0 574660 SRAEAESMYQIK IIAEVKAQYEDIANRSRAEAESMYQIKYEE ANRSRAEAESMYQIKYEELQSLAGKHGDDL R S R I K Y 2 1 0 0 0 1 2 0 0 1 0 1 1 0 0 2 0 0 1 0 0 0 12 1 1411.6766 CON__P05787;P05787 CON__P05787 274 285 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 1.5843E-44 219.33 By MS/MS By MS/MS 3.81 1.79 4 3 4 6 5 3 2 9 18 1384800000 0 274700000 1110100000 + 12552 49 13208;13209 54542;54543;54544;54545;54546;54547;54548;54549;54550;54551;54552;54553;54554;54555;54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568 45600;45601;45602;45603;45604;45605;45606;45607;45608;45609;45610;45611;45612;45613;45614;45615;45616 45612 25 17 0 88973000 181500000 SRAEAESWYQTK IIAEVKAQYEEIAQRSRAEAESWYQTKYEE AQRSRAEAESWYQTKYEELQVTAGRHGDDL R S R T K Y 2 1 0 0 0 1 2 0 0 0 0 1 0 0 0 2 1 1 1 0 0 0 12 1 1454.679 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 348 359 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2;3 3.5901E-106 267.07 By MS/MS By MS/MS 4.87 3.17 4 2 4 4 1 1 2 2 3 13 10 307290000 233590000 0 73693000 + 12553 68;37;47;69 13210 54569;54570;54571;54572;54573;54574;54575;54576;54577;54578;54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591 45617;45618;45619;45620;45621;45622;45623;45624;45625;45626;45627;45628;45629;45630;45631;45632 45628 16 201840000 0 21343000 SREDAGDNDDTEGAIGVR FARMELREHGEKKKRSREDAGDNDDTEGAI DAGDNDDTEGAIGVRNKVAGGKMKKRKGR_ R S R V R N 2 2 1 4 0 0 2 3 0 1 0 0 0 0 0 1 1 0 0 1 0 0 18 1 1875.8195 Q9H0S4 Q9H0S4 424 441 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2;3 8.8698E-33 206.63 By MS/MS 4.67 0.471 1 2 3 25683000 0 0 25683000 12554 1964 13211 54592;54593;54594 45633;45634 45633 2 0 0 3785200 SRFWYFVSQLK LYRMRIFAPNHVVAKSRFWYFVSQLKKMKK VVAKSRFWYFVSQLKKMKKSSGEIVYCGQV K S R L K K 0 1 0 0 0 1 0 0 0 0 1 1 0 2 0 2 0 1 1 1 0 0 11 1 1459.7612 Q02543 Q02543 42 52 RPL18A 60S ribosomal protein L18a yes yes 2 0.010062 111.27 By MS/MS 5.5 1.12 1 1 1 1 4 27782000 0 0 27782000 12555 1147 13212 54595;54596;54597;54598 45635 45635 1 0 0 4446300 SRGFGFVTYATVEEVDAAMNARPHK TLTDCVVMRDPNTKRSRGFGFVTYATVEEV TVEEVDAAMNARPHKVDGRVVEPKRAVSRE R S R H K V 4 2 1 1 0 0 2 2 1 0 0 1 1 2 1 1 2 0 1 3 0 0 25 2 2752.3391 P09651 P09651 54 78 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 4;5 0.00017538 59.242 By MS/MS 6 0 2 2 12815000 0 12815000 0 12556 490 13213 54599;54600 45636;45637 45637 2 0 4436000 0 SRKESYSIYVYK AVTKAQKKDGKKRKRSRKESYSIYVYKVLK RKRSRKESYSIYVYKVLKQVHPDTGISSKA R S R Y K V 0 1 0 0 0 0 1 0 0 1 0 2 0 0 0 3 0 0 3 1 0 0 12 2 1521.7827 P06899;Q16778;P33778;P23527;Q6DRA6;Q6DN03 P06899 33 44 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST2H2BD;HIST2H2BC Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Putative histone H2B type 2-D;Putative histone H2B type 2-C no no 3 0.00023561 120.87 By MS/MS By MS/MS 7.5 0.957 1 2 2 1 3 3 108060000 0 35671000 72389000 12557 451;644;1472 13214 54601;54602;54603;54604;54605;54606 45638;45639;45640;45641 45639 4 0 16714000 12353000 SRKESYSVYVYK AVTKAQKKDGRKRKRSRKESYSVYVYKVLK RKRSRKESYSVYVYKVLKQVHPDTGISSKA R S R Y K V 0 1 0 0 0 0 1 0 0 0 0 2 0 0 0 3 0 0 3 2 0 0 12 2 1507.7671 P57053;O60814 P57053 33 44 H2BFS;HIST1H2BK Histone H2B type F-S;Histone H2B type 1-K no no 3 0.0030393 94.688 By MS/MS By MS/MS 7.8 0.748 2 2 1 2 3 263710000 0 93079000 170630000 12558 953 13215 54607;54608;54609;54610;54611 45642;45643;45644;45645 45644 4 0 44634000 28700000 SRLDQELK VCRKTYVTPRRPFEKSRLDQELKLIGEYGL PRRPFEKSRLDQELKLIGEYGLRNKREVWR K S R L K L 0 1 0 1 0 1 1 0 0 0 2 1 0 0 0 1 0 0 0 0 0 0 8 1 987.53491 P46781 P46781 23 30 RPS9 40S ribosomal protein S9 yes yes 2 3.5297E-24 158.07 By MS/MS 7 0 1 1 0 0 0 0 12559 831 13216 54612 45646 45646 1 0 0 0 SRNTDEMVELR KRPAEDMEEEQAFKRSRNTDEMVELRILLQ AFKRSRNTDEMVELRILLQSKNAGAVIGKG R S R L R I 0 2 1 1 0 0 2 0 0 0 1 0 1 0 0 1 1 0 0 1 0 0 11 1 1348.6405 P61978 P61978 36 46 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 3 0.028366 61.235 By matching By MS/MS 4.33 0.471 2 1 1 2 6711600 1066600 5645000 0 12560 1002 13217 54613;54614;54615 45647 45647 1 832170 1805900 0 SRPAPSPESIKR GLARVADNAQQQYVRSRPAPSPESIKRAKE YVRSRPAPSPESIKRAKEMDLVGLGLHPLF R S R K R A 1 2 0 0 0 0 1 0 0 1 0 1 0 0 3 3 0 0 0 0 0 0 12 2 1323.7259 Q8TDD1 Q8TDD1 522 533 DDX54 ATP-dependent RNA helicase DDX54 yes yes 3 0.056674 53.448 By MS/MS 2 0 1 1 935030 0 0 935030 12561 1661 13218 54616 45648 45648 1 0 0 211300 SRPELLEYYIK STSLKAKVLETFLAKSRPELLEYYIKVILD FLAKSRPELLEYYIKVILDYNTAHNKVALS K S R I K V 0 1 0 0 0 0 2 0 0 1 2 1 0 0 1 1 0 0 2 0 0 0 11 1 1409.7555 Q14258 Q14258 448 458 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.0094104 112.13 By MS/MS By matching 3.5 0.5 1 1 1 1 9410300 0 5098500 4311700 12562 1297 13219 54617;54618 45649 45649 1 0 2173500 704250 SRPFTVAASFQSTSVK LDLKKLRRSSSLKERSRPFTVAASFQSTSV RPFTVAASFQSTSVKSPKTVSPPIRKGWSM R S R V K S 2 1 0 0 0 1 0 0 0 0 0 1 0 2 1 4 2 0 0 2 0 0 16 1 1711.8893 Q9UHB6 Q9UHB6 588 603 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 9.0495E-08 171.08 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 22808000 0 2544800 20263000 12563 2150 13220 54619;54620;54621 45650;45651;45652 45651 3 0 1084900 4256900 SRTEAESWYQTK IIAEVKAQYEEIANRSRTEAESWYQTKYEE ANRSRTEAESWYQTKYEELQQTAGRHGDDL R S R T K Y 1 1 0 0 0 1 2 0 0 0 0 1 0 0 0 2 2 1 1 0 0 0 12 1 1484.6896 CON__P13647;P13647 CON__P13647 353 364 KRT5 Keratin, type II cytoskeletal 5 no no 2;3 3.867E-11 178.49 By MS/MS By MS/MS By MS/MS 5.52 3.09 5 4 3 3 3 2 2 2 5 17 2 10 440220000 355560000 4554000 80112000 + 12564 58 13221 54622;54623;54624;54625;54626;54627;54628;54629;54630;54631;54632;54633;54634;54635;54636;54637;54638;54639;54640;54641;54642;54643;54644;54645;54646;54647;54648;54649;54650 45653;45654;45655;45656;45657;45658;45659;45660;45661;45662;45663;45664;45665;45666;45667;45668;45669;45670;45671;45672;45673;45674;45675 45667 23 333660000 4652000 31232000 SRWDETPASQMGGSTPVLTPGK DSIGETPTPGASKRKSRWDETPASQMGGST ASQMGGSTPVLTPGKTPIGTPAMNMATPTP K S R G K T 1 1 0 1 0 1 1 3 0 0 1 1 1 0 3 3 3 1 0 1 0 0 22 1 2301.1059 O75533 O75533 336 357 SF3B1 Splicing factor 3B subunit 1 yes yes 3 1.0744E-09 97.059 By MS/MS By MS/MS 2 0 3 2 1 20780000 0 12629000 8151400 12565 270 13222;13223 54651;54652;54653 45676;45677;45678 45677 104 3 0 5687000 1842100 SRYEQVDLVGK TCPQWVYKVAKKYMKSRYEQVDLVGKMTQK KYMKSRYEQVDLVGKMTQKAATTVEHLAIQ K S R G K M 0 1 0 1 0 1 1 1 0 0 1 1 0 0 0 1 0 0 1 2 0 0 11 1 1292.6725 Q9BQ39 Q9BQ39 343 353 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.0040217 119.27 By MS/MS 3 0 1 1 4796100 0 4796100 0 12566 1876 13224 54654 45679 45679 1 0 2044600 0 SSAAEPPPPPPPESAPSKPAASIASGGSNSSNK ______________________________ PAASIASGGSNSSNKGGPEGVAAQAVASAA M S S N K G 6 0 2 0 0 0 2 2 0 1 0 2 0 0 9 9 0 0 0 0 0 0 33 1 3070.4843 O60264 O60264 2 34 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 3.1003E-56 167.07 By MS/MS By MS/MS 2 0 2 1 1 31630000 0 12567000 19063000 12567 223 13225 54655;54656 45680;45681 45681 2 0 5659000 4307900 SSAIVEIFSK LRVTAKELSLVNKNKSSAIVEIFSKYQKAA VNKNKSSAIVEIFSKYQKAAEETNMEKKRS K S S S K Y 1 0 0 0 0 0 1 0 0 2 0 1 0 1 0 3 0 0 0 1 0 0 10 0 1079.5863 Q9UHB6 Q9UHB6 31 40 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 0.0077155 92.051 By MS/MS 2 0 1 1 8500200 0 0 8500200 12568 2150 13226 54657 45682 45682 1 0 0 1920900 SSALREEVQSLREEAEK LQAETASNSARAAERSSALREEVQSLREEA ALREEVQSLREEAEKQRVASENLRQELTSQ R S S E K Q 2 2 0 0 0 1 5 0 0 0 2 1 0 0 0 3 0 0 0 1 0 0 17 2 1959.9861 Q14980 Q14980 1287 1303 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 3.2651E-06 136.66 By MS/MS 1 0 1 1 22934000 0 0 22934000 12569 1327 13227 54658 45683 45683 1 0 0 4941400 SSASAPDVDDPEAFPALA RGRGGRPNRGSRTDKSSASAPDVDDPEAFP SAPDVDDPEAFPALA_______________ K S S L A - 5 0 0 3 0 0 1 0 0 0 1 0 0 1 3 3 0 0 0 1 0 0 18 0 1758.7948 Q8NC51 Q8NC51 391 408 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.00019869 98.257 By MS/MS By MS/MS 3.71 1.67 1 1 1 1 2 1 2 5 98966000 0 8875900 90090000 12570 1630 13228 54659;54660;54661;54662;54663;54664;54665 45684;45685;45686 45685 3 0 2468100 14791000 SSATSGDIWPGLSAYDNSPR TFEHDPSESIDEFNKSSATSGDIWPGLSAY GDIWPGLSAYDNSPRSPHSPSPIATPPSQS K S S P R S 2 1 1 2 0 0 0 2 0 1 1 0 0 0 2 5 1 1 1 0 0 0 20 0 2079.9498 Q9NYF8 Q9NYF8 205 224 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 8.889E-22 180.97 By MS/MS 2 0 1 1 7692000 0 0 7692000 12571 2097 13229 54666 45687 45687 1 0 0 1738200 SSAVDPEPQVK KSRKTPQKSRNRKNRSSAVDPEPQVKLEDV RKNRSSAVDPEPQVKLEDVLPLAFTRLCEP R S S V K L 1 0 0 1 0 1 1 0 0 0 0 1 0 0 2 2 0 0 0 2 0 0 11 0 1155.5772 Q5SSJ5 Q5SSJ5 248 258 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.00032711 121.64 By MS/MS 3 0 1 1 6972000 0 6972000 0 12572 1445 13230 54667 45688 45688 1 0 2972200 0 SSAVQQLLEK ITFVRKNKTLSAAFKSSAVQQLLEKNYRIH SAAFKSSAVQQLLEKNYRIHCSVHNIIIPE K S S E K N 1 0 0 0 0 2 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 10 0 1101.603 Q9UNQ2 Q9UNQ2 244 253 DIMT1 Probable dimethyladenosine transferase yes yes 2 0.026848 79.128 By MS/MS 6 0 1 1 7755200 0 0 7755200 12573 2210 13231 54668 45689 45689 1 0 0 1160300 SSAYESLMEIVK LETTDRPDGHQNNLRSSAYESLMEIVKNSA NLRSSAYESLMEIVKNSAKDCYPAVQKTTL R S S V K N 1 0 0 0 0 0 2 0 0 1 1 1 1 0 0 3 0 0 1 1 0 0 12 0 1355.6643 Q14974 Q14974 526 537 KPNB1 Importin subunit beta-1 yes yes 2 0.0055473 101.97 By MS/MS 3 0.816 1 1 1 3 17625000 0 0 17625000 12574 1325 13232 54669;54670;54671 45690;45691 45690 2 0 0 3537200 SSDAFTTQHALR VEQEAQVETSPETSRSSDAFTTQHALRQAQ TSRSSDAFTTQHALRQAQMSKELVELNKAL R S S L R Q 2 1 0 1 0 1 0 0 1 0 1 0 0 1 0 2 2 0 0 0 0 0 12 0 1332.6422 O95239 O95239 507 518 KIF4A Chromosome-associated kinesin KIF4A yes yes 3 0.0016128 96.229 By MS/MS 1.5 0.5 1 1 2 13775000 0 0 13775000 12575 314 13233 54672;54673 45692 45692 1 0 0 3042600 SSDRLDEAAQR KLSPESAEEYIEYLKSSDRLDEAAQRLATV EYLKSSDRLDEAAQRLATVVNDERFVSKAG K S S Q R L 2 2 0 2 0 1 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 11 1 1246.5902 Q9HCS7 Q9HCS7 189 199 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 3 0.0014839 98.105 By MS/MS By matching 2.5 0.5 1 1 1 1 4006800 0 1629700 2377100 12576 2014 13234 54674;54675 45693 45693 1 0 733890 461040 SSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDK ______________________________ GPGGLTSAAPAGGDKKVIATKVLGTVKWFN M S S D K K 12 0 0 2 0 2 2 10 0 0 2 2 0 0 8 6 5 0 0 0 0 0 51 1 4471.1375 P67809 P67809 2 52 YBX1 Nuclease-sensitive element-binding protein 1 yes yes 4 2.9726E-77 119.94 By MS/MS 5 0 1 1 8203200 0 8203200 0 12577 1072 13235 54676 45694 45694 1 0 2114500 0 SSEAVIWEVLR LLMVLLSIIFMNGNRSSEAVIWEVLRKLGL NGNRSSEAVIWEVLRKLGLRPGIHHSLFGD R S S L R K 1 1 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 1 0 2 0 0 11 0 1287.6823 Q9UNF1 Q9UNF1 386 396 MAGED2 Melanoma-associated antigen D2 yes yes 2 0.0023196 108.15 By MS/MS 2.5 0.5 1 1 2 7246700 0 0 7246700 12578 2206 13236 54677;54678 45695 45695 1 0 0 1500400 SSEDPNEDIVER DNKCKCARITSRIIRSSEDPNEDIVERNIR IIRSSEDPNEDIVERNIRIIVPLNNRENIS R S S E R N 0 1 1 2 0 0 3 0 0 1 0 0 0 0 1 2 0 0 0 1 0 0 12 0 1388.6056 P01591 P01591 47 58 IGJ Immunoglobulin J chain yes yes 2 0.0011021 117.02 By MS/MS 9 0 1 1 3335000 3335000 0 0 12579 376 13237 54679 45696 45696 1 1872000 0 0 SSEEIESAFR EYMAFMISRETENVKSSEEIESAFRALSSE TENVKSSEEIESAFRALSSEGKPYVTKEEL K S S F R A 1 1 0 0 0 0 3 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 10 0 1153.5251 Q13813 Q13813 2405 2414 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 1.6724E-38 208.37 By MS/MS By MS/MS 3.5 3.77 2 1 1 1 3 41066000 0 16168000 24898000 12580 1268 13238 54680;54681;54682;54683 45697;45698;45699 45697 3 0 7902900 5401200 SSEELLSALQK MTQEQIQKEYDALVKSSEELLSALQKKKQQ ALVKSSEELLSALQKKKQQEEEAERLRRIQ K S S Q K K 1 0 0 0 0 1 2 0 0 0 3 1 0 0 0 3 0 0 0 0 0 0 11 0 1203.6347 Q9UM54 Q9UM54 905 915 MYO6 Unconventional myosin-VI yes yes 2 0.00015326 138.98 By matching By MS/MS By MS/MS 1.75 0.433 1 3 2 1 1 37658000 6877100 22488000 8293400 12581 2198 13239 54684;54685;54686;54687 45700;45701 45700 2 7281100 10127000 1874100 SSELEESLLVLPFSYVPDILK ISPSAYVLEIFKGIKSSELEESLLVLPFSY SLLVLPFSYVPDILKLFNEFIQLGSDVELI K S S L K L 0 0 0 1 0 0 3 0 0 1 5 1 0 1 2 4 0 0 1 2 0 0 21 0 2377.2668 Q9UNX4 Q9UNX4 817 837 WDR3 WD repeat-containing protein 3 yes yes 2 0.00035444 75.911 By MS/MS 1.5 0.5 1 1 2 2729800 0 0 2729800 12582 2212 13240 54688;54689 45702 45702 1 0 0 611550 SSEPPPPPQPPTHQASVGLLDTPR ______________________________ PPTHQASVGLLDTPRSRERSPSPLRGNVVP M S S P R S 1 1 0 1 0 2 1 1 1 0 2 0 0 0 8 3 2 0 0 1 0 0 24 0 2504.266 Q9Y2V2 Q9Y2V2 2 25 CARHSP1 Calcium-regulated heat stable protein 1 yes yes 3 0.000229 59.943 By MS/MS 8 0 1 1 1476800 0 1476800 0 12583 2251 13241 54690 45703 45703 1 0 671900 0 SSEQILATLK ILTGGADKNVVVFDKSSEQILATLKGHTKK VVFDKSSEQILATLKGHTKKVTSVVFHPSQ K S S L K G 1 0 0 0 0 1 1 0 0 1 2 1 0 0 0 2 1 0 0 0 0 0 10 0 1088.6077 Q9UMS4 Q9UMS4 252 261 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 7.1232E-07 155.58 By MS/MS By MS/MS By MS/MS 4.45 1.44 1 2 3 2 2 1 1 5 5 366890000 9191500 188230000 169470000 12584 2199 13242 54691;54692;54693;54694;54695;54696;54697;54698;54699;54700;54701 45704;45705;45706;45707;45708;45709;45710 45706 7 7171000 63153000 28223000 SSFFSDR DAYSSFGSRSDSRGKSSFFSDRGSGSRGRF SRSDSRGKSSFFSDRGSGSRGRFDDRGRSD K S S D R G 0 1 0 1 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 0 0 0 7 0 844.37153 O00571 O00571 82 88 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2 0.0075691 124.37 By MS/MS 3 0 1 1 15721000 0 15721000 0 12585 131 13243 54702 45711 45711 1 0 6701700 0 SSFFVNGLTLGGQK NITPAEVGILVGKDRSSFFVNGLTLGGQKC RSSFFVNGLTLGGQKCSVIRDSLLQDGEFT R S S Q K C 0 0 1 0 0 1 0 3 0 0 2 1 0 2 0 2 1 0 0 1 0 0 14 0 1453.7565 CON__P02584 CON__P02584 57 70 yes yes 2 0.00037432 132.32 By MS/MS By matching By MS/MS 9.5 0.5 2 2 1 1 2 9048100 629440 401510 8017200 + 12586 38 13244 54703;54704;54705;54706 45712;45713;45714 45713 3 1146700 321510 5522000 SSFLPSYIIDVR SLAEEHEGLVGEGQRSSFLPSYIIDVRALD GQRSSFLPSYIIDVRALDEKLLNIIDLQFL R S S V R A 0 1 0 1 0 0 0 0 0 2 1 0 0 1 1 3 0 0 1 1 0 0 12 0 1395.7398 Q10570 Q10570 183 194 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.02133 83.862 By MS/MS 2 0 1 1 2606900 0 2606900 0 12587 1194 13245 54707 45715 45715 1 0 1173900 0 SSFSHYSGLK SRGKREFDRHSGSDRSSFSHYSGLKHEDKR SGSDRSSFSHYSGLKHEDKRGGSGSHNWGT R S S L K H 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 4 0 0 1 0 0 0 10 0 1111.5298 Q8NC51 Q8NC51 202 211 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein yes yes 2 0.00023599 122.44 By MS/MS 4 0 1 1 32518000 0 0 32518000 12588 1630 13246 54708 45716 45716 1 0 0 5311200 SSFSYEPYYSTSYK ______________________________ MSSFSYEPYYSTSYKRRYVETPRVHISSVR M S S Y K R 0 0 0 0 0 0 1 0 0 0 0 1 0 1 1 5 1 0 4 0 0 0 14 0 1707.7304 P07196 P07196 2 15 NEFL Neurofilament light polypeptide yes yes 2 0.0037132 84.507 By MS/MS 4 0 1 1 1542400 0 1542400 0 12589 453 13247 54709 45717 45717 1 0 511860 0 SSFYPDGGDQETAK TIAPQNAPRDESRGRSSFYPDGGDQETAKT RSSFYPDGGDQETAKTGKFLKRFTDEESRV R S S A K T 1 0 0 2 0 1 1 2 0 0 0 1 0 1 1 2 1 0 1 0 0 0 14 0 1500.6369 Q9NYF8 Q9NYF8 319 332 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.00070279 115.39 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 78090000 0 28795000 49295000 12590 2097 13248 54710;54711;54712;54713;54714;54715;54716 45718;45719;45720;45721 45718 4 0 13009000 10320000 SSFYSLTSSNISK SSDLTLSSVLWDRERSSFYSLTSSNISKWE ERSSFYSLTSSNISKWELDDSSEKHAYSWD R S S S K W 0 0 1 0 0 0 0 0 0 1 1 1 0 1 0 6 1 0 1 0 0 0 13 0 1419.6882 Q8WUM0 Q8WUM0 284 296 NUP133 Nuclear pore complex protein Nup133 yes yes 2 0.019915 78.342 By matching By MS/MS 2 0.816 1 1 1 1 2 15868000 3100900 0 12767000 12591 1675 13249 54717;54718;54719 45722 45722 1 3100900 0 2781400 SSFYVNGLTLGGQK NITPAEVGVLVGKDRSSFYVNGLTLGGQKC RSSFYVNGLTLGGQKCSVIRDSLLQDGEFS R S S Q K C 0 0 1 0 0 1 0 3 0 0 2 1 0 1 0 2 1 0 1 1 0 0 14 0 1469.7514 P07737 P07737 57 70 PFN1 Profilin-1 yes yes 2 0.0003575 148.56 By MS/MS 9 0 1 1 34806000 0 0 34806000 12592 463 13250 54720 45723 45723 1 0 0 11119000 SSGAASSAPGGGDGAEYK GESRSSSRGGGGESRSSGAASSAPGGGDGA AASSAPGGGDGAEYKTLKISELGSQLSDEA R S S Y K T 4 0 0 1 0 0 1 5 0 0 0 1 0 0 1 4 0 0 1 0 0 0 18 0 1567.675 Q96T37 Q96T37 153 170 RBM15 Putative RNA-binding protein 15 yes yes 2 0.00033304 84.468 By MS/MS 2 0 1 1 1504500 0 1504500 0 12593 1838 13251 54721 45724 45724 0 0 677490 0 SSGASVTTQPTEFK PAEVDPDTILKALFKSSGASVTTQPTEFKI KSSGASVTTQPTEFKIKL____________ K S S F K I 1 0 0 0 0 1 1 1 0 0 0 1 0 1 1 3 3 0 0 1 0 0 14 0 1438.694 Q9BY77 Q9BY77 405 418 POLDIP3 Polymerase delta-interacting protein 3 yes yes 2 0.0021801 101.39 By MS/MS 4 0.816 1 1 1 3 31893000 0 0 31893000 12594 1933 13252 54722;54723;54724 45725;45726 45726 2 0 0 5023500 SSGEIVYCGQVFEK SRFWYFVSQLKKMKKSSGEIVYCGQVFEKS KSSGEIVYCGQVFEKSPLRVKNFGIWLRYD K S S E K S 0 0 0 0 1 1 2 2 0 1 0 1 0 1 0 2 0 0 1 2 0 0 14 0 1601.7396 Q02543 Q02543 57 70 RPL18A 60S ribosomal protein L18a yes yes 2 0.0021262 101.79 By MS/MS 6.5 0.5 1 1 2 36415000 0 0 36415000 12595 1147 13253 54725;54726 45727 45727 1 0 0 6306200 SSGGSEHSTEGSVSLGDGQLNR MGRPFQKNRVKPQFRSSGGSEHSTEGSVSL STEGSVSLGDGQLNRYSSRNFPAERHNPTV R S S N R Y 0 1 1 1 0 1 2 5 1 0 2 0 0 0 0 6 1 0 0 1 0 0 22 0 2159.9679 Q71RC2 Q71RC2 381 402 LARP4 La-related protein 4 yes yes 3 2.5566E-15 120.11 By MS/MS By matching 2.5 0.5 1 1 1 1 13383000 0 7071500 6311400 12596 1514 13254 54727;54728 45728 45728 1 0 3184400 1224100 SSGHSSSELSPDAVEK LETDPSLDMKEQSTRSSGHSSSELSPDAVE SGHSSSELSPDAVEKAGMSSNQSISSPVLD R S S E K A 1 0 0 1 0 0 2 1 1 0 1 1 0 0 1 6 0 0 0 1 0 0 16 0 1615.7326 Q9UQ35 Q9UQ35 1378 1393 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 0.016596 50.053 By MS/MS 1.5 0.5 1 1 2 5148300 0 5148300 0 12597 2219 13255 54729;54730 45729 45729 1 0 2487400 0 SSGLTAVWVAR KDADSQNPDAPEGKRSSGLTAVWVARNRFA EGKRSSGLTAVWVARNRFAVLDRMHSLLIK R S S A R N 2 1 0 0 0 0 0 1 0 0 1 0 0 0 0 2 1 1 0 2 0 0 11 0 1145.6193 P53621 P53621 413 423 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.00066777 117.76 By MS/MS 2 0 1 1 5096300 0 5096300 0 12598 922 13256 54731 45730 45730 1 0 2294900 0 SSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMK ______________________________ HPATGTGAVQTEAMKQILGVIDKKLRNLEK K S S M K Q 11 0 0 0 0 2 2 7 1 0 0 1 1 0 6 7 3 0 0 1 0 0 42 0 3702.718 Q14444 Q14444 14 55 CAPRIN1 Caprin-1 yes yes 3;4 1.6304E-106 175.3 By MS/MS By MS/MS 3.56 2.06 3 3 2 1 6 3 124660000 0 71249000 53409000 12599 1301 13257 54732;54733;54734;54735;54736;54737;54738;54739;54740 45731;45732;45733;45734;45735;45736;45737;45738 45736 8 0 28869000 10936000 SSGPTSLFAVTVAPPGAR QPQQQRGAAKEAAGKSSGPTSLFAVTVAPP PTSLFAVTVAPPGARQGQQQAGGKKKAEGG K S S A R Q 3 1 0 0 0 0 0 2 0 0 1 0 0 1 3 3 2 0 0 2 0 0 18 0 1713.905 Q00839 Q00839 187 204 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 1.5297E-09 158.86 By matching By MS/MS By MS/MS 3.67 2.33 3 5 2 2 2 2 1 1 2 9 7 743030000 5836300 368890000 368300000 12600 1127 13258 54741;54742;54743;54744;54745;54746;54747;54748;54749;54750;54751;54752;54753;54754;54755;54756;54757;54758 45739;45740;45741;45742;45743;45744;45745;45746;45747;45748;45749;45750;45751;45752;45753;45754;45755;45756;45757;45758 45745 20 6678800 162940000 79764000 SSGPYGGGGQYFAK SSNFGPMKGGNFGGRSSGPYGGGGQYFAKP RSSGPYGGGGQYFAKPRNQGGYGGSSSSSS R S S A K P 1 0 0 0 0 1 0 5 0 0 0 1 0 1 1 2 0 0 2 0 0 0 14 0 1374.6204 P09651;Q32P51 P09651 337 350 HNRNPA1;HNRNPA1L2 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2 yes no 2 1.1656E-12 120.68 By MS/MS 6 0 1 1 0 0 0 0 12601 490 13259 54759 45759 45759 1 0 0 0 SSGPYGGGGQYFAKPR SSNFGPMKGGNFGGRSSGPYGGGGQYFAKP SGPYGGGGQYFAKPRNQGGYGGSSSSSSYG R S S P R N 1 1 0 0 0 1 0 5 0 0 0 1 0 1 2 2 0 0 2 0 0 0 16 1 1627.7743 P09651 P09651 337 352 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 2;3 1.9857E-73 243.77 By matching By MS/MS By MS/MS 4.79 2.63 4 3 2 5 4 4 3 2 2 1 15 13 2966600000 3216500 1341100000 1622300000 12602 490 13260 54760;54761;54762;54763;54764;54765;54766;54767;54768;54769;54770;54771;54772;54773;54774;54775;54776;54777;54778;54779;54780;54781;54782;54783;54784;54785;54786;54787;54788 45760;45761;45762;45763;45764;45765;45766;45767;45768;45769;45770;45771;45772;45773;45774;45775;45776;45777;45778;45779;45780;45781;45782;45783;45784;45785;45786;45787;45788;45789;45790 45769 31 2509500 517270000 243780000 SSGSLLNNAIK LIWLSQRQKDNGCFRSSGSLLNNAIKGGVE GCFRSSGSLLNNAIKGGVEDEVTLSAYITI R S S I K G 1 0 2 0 0 0 0 1 0 1 2 1 0 0 0 3 0 0 0 0 0 0 11 0 1102.5982 P01023 P01023 1082 1092 A2M Alpha-2-macroglobulin no no 2 7.6965E-05 142.04 By MS/MS 9.5 0.5 1 1 2 21544000 21544000 0 0 12603 370 13261 54789;54790 45791;45792 45792 2 20425000 0 0 SSGSPYGGGYGSGGGSGGYGSR QSNYGPMKGGSFGGRSSGSPYGGGYGSGGG GGYGSGGGSGGYGSRRF_____________ R S S S R R 0 1 0 0 0 0 0 11 0 0 0 0 0 0 1 6 0 0 3 0 0 0 22 0 1909.7827 P51991 P51991 355 376 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2;3 8.2996E-93 242.91 By MS/MS By MS/MS By MS/MS 4.43 1.64 1 1 2 2 4 3 1 2 7 5 342350000 13009000 137000000 192340000 12604 900 13262 54791;54792;54793;54794;54795;54796;54797;54798;54799;54800;54801;54802;54803;54804 45793;45794;45795;45796;45797;45798;45799;45800;45801;45802;45803;45804;45805;45806;45807 45799 15 13059000 42231000 27591000 SSGVPVDGFYTEEVR VGKTTLIHKASEVLKSSGVPVDGFYTEEVR SSGVPVDGFYTEEVRQGGRRIGFDVVTLSG K S S V R Q 0 1 0 1 0 0 2 2 0 0 0 0 0 1 1 2 1 0 1 3 0 0 15 0 1640.7682 Q9BSD7 Q9BSD7 28 42 NTPCR Cancer-related nucleoside-triphosphatase yes yes 2 1.9488E-11 176.78 By MS/MS 4.75 1.48 1 1 1 1 4 52254000 0 0 52254000 12605 1896 13263 54805;54806;54807;54808 45808 45808 1 0 0 9209000 SSGYPLTIEGFAYLWSGAR DTYNCDLHFKVARDRSSGYPLTIEGFAYLW PLTIEGFAYLWSGARASYGVRRGRVCFEMK R S S A R A 2 1 0 0 0 0 1 3 0 1 2 0 0 1 1 3 1 1 2 0 0 0 19 0 2074.016 Q9BUJ2 Q9BUJ2 229 247 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 2 1.0625E-08 143.25 By MS/MS 2.5 0.5 1 1 2 6119600 0 0 6119600 12606 1907 13264 54809;54810 45809 45809 1 0 0 1335000 SSHLPTEVIEKPPAVPVSFEFSDAKDENER SAGHTPYYQSPTDEKSSHLPTEVIEKPPAV PVSFEFSDAKDENERASVSPMDEPVPDSES K S S E R A 2 1 1 2 0 0 5 0 1 1 1 2 0 2 4 4 1 0 0 3 0 0 30 2 3353.6416 P46821 P46821 1345 1374 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 4;5 5.9472E-20 98.839 By MS/MS 1 0 2 2 16001000 0 0 16001000 12607 834 13265 54811;54812 45810;45811 45810 1 0 0 3447800 SSHYDELLAAEAR GLATVIRYRQDDDQRSSHYDELLAAEARAI QRSSHYDELLAAEARAIKNGKGLHSKKEVP R S S A R A 3 1 0 1 0 0 2 0 1 0 2 0 0 0 0 2 0 0 1 0 0 0 13 0 1460.6896 Q7KZF4 Q7KZF4 473 485 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 0.00033283 140.78 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 71514000 0 32725000 38789000 12608 1518 13266 54813;54814;54815;54816 45812;45813;45814 45813 3 0 14737000 8712800 SSIAGLLLK ELARREDVRHYLQGRSSIAGLLLKATNEKL HYLQGRSSIAGLLLKATNEKLSVYAALQRQ R S S L K A 1 0 0 0 0 0 0 1 0 1 3 1 0 0 0 2 0 0 0 0 0 0 9 0 900.56442 Q15149 Q15149 2833 2841 PLEC Plectin yes yes 2 0.027779 77.923 By MS/MS 1 0 1 1 11980000 0 11980000 0 12609 1348 13267 54817 45815 45815 1 0 5855800 0 SSIGTGYDLSASTFSPDGR ______________________________ TGYDLSASTFSPDGRVFQVEYAMKAVENSS M S S G R V 1 1 0 2 0 0 0 3 0 1 1 0 0 1 1 5 2 0 1 0 0 0 19 0 1916.8752 P25788 P25788 2 20 PSMA3 Proteasome subunit alpha type-3 yes yes 2 6.8271E-17 131.66 By matching By MS/MS 7 0 2 1 1 5993400 0 2380800 3612600 12610 663 13268 54818;54819 45816 45816 0 0 1367100 641020 SSILLDVKPWDDETDMAK QYESKKAKKPALVAKSSILLDVKPWDDETD LLDVKPWDDETDMAKLEECVRSIQADGLVW K S S A K L 1 0 0 4 0 0 1 0 0 1 2 2 1 0 1 2 1 1 0 1 0 0 18 1 2061.9929 P24534 P24534 140 157 EEF1B2 Elongation factor 1-beta yes yes 2;3 1.3542E-07 146.77 By MS/MS 6.33 0.471 2 1 3 34849000 0 0 34849000 12611 649 13269 54820;54821;54822 45817;45818;45819 45818 3 0 0 5355400 SSLDLSYYPTSSSTSFMSSSSSSSSWLTR AYQSITHYRPVSASRSSLDLSYYPTSSSTS SFMSSSSSSSSWLTRRAIRPENRAPGAGLG R S S T R R 0 1 0 1 0 0 0 0 0 0 3 0 1 1 1 15 3 1 2 0 0 0 29 0 3124.3819 P50402 P50402 175 203 EMD Emerin yes yes 3 6.2337E-11 79.395 By MS/MS By matching 6 0 2 1 1 8744500 0 2920400 5824000 12612 878 13270 54823;54824 45820 45820 1 0 1011000 871340 SSLGSLQTPEAVTTR ARRKTVFSPTLPAARSSLGSLQTPEAVTTR SSLGSLQTPEAVTTRKGTGLLSSDYRIING R S S T R K 1 1 0 0 0 1 1 1 0 0 2 0 0 0 1 3 3 0 0 1 0 0 15 0 1545.7999 Q7Z2W4 Q7Z2W4 386 400 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 yes yes 2 0.00097259 98.105 By MS/MS 4.5 0.5 1 1 2 3654900 0 3654900 0 12613 1528 13271 54825;54826 45821 45821 1 0 1070400 0 SSLLEKGLDGAK DPGLARQAPKPRKQRSSLLEKGLDGAKKAV KQRSSLLEKGLDGAKKAVGGLGKLGKDAVE R S S A K K 1 0 0 1 0 0 1 2 0 0 3 2 0 0 0 2 0 0 0 0 0 0 12 1 1216.6663 P81605 P81605 63 74 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 2.5725E-57 231.07 By MS/MS By matching 6.18 3.02 2 2 1 2 2 2 2 2 3 4 19 3 398740000 393330000 0 5416400 12614 1094 13272 54827;54828;54829;54830;54831;54832;54833;54834;54835;54836;54837;54838;54839;54840;54841;54842;54843;54844;54845;54846;54847;54848 45822;45823;45824;45825;45826;45827;45828;45829;45830;45831;45832;45833;45834;45835 45833 14 385460000 0 9011000 SSLLEKGLDGAKK DPGLARQAPKPRKQRSSLLEKGLDGAKKAV QRSSLLEKGLDGAKKAVGGLGKLGKDAVED R S S K K A 1 0 0 1 0 0 1 2 0 0 3 3 0 0 0 2 0 0 0 0 0 0 13 2 1344.7613 P81605 P81605 63 75 DCD Dermcidin;Survival-promoting peptide;DCD-1 yes yes 2;3 3.3808E-05 102.03 By MS/MS By matching By matching 5.88 3.35 3 1 1 1 1 1 1 2 2 3 12 3 1 417500000 412220000 3789700 1492400 12615 1094 13273 54849;54850;54851;54852;54853;54854;54855;54856;54857;54858;54859;54860;54861;54862;54863;54864 45836;45837;45838;45839;45840;45841;45842;45843;45844 45841 8 424030000 5698800 3264000 SSLLSEIQALR DLQEKSLEHLRLPDRSSLLSEIQALRAQLR LPDRSSLLSEIQALRAQLRMTHLQNQEKLQ R S S L R A 1 1 0 0 0 1 1 0 0 1 3 0 0 0 0 3 0 0 0 0 0 0 11 0 1215.6823 O95613 O95613 2515 2525 PCNT Pericentrin yes yes 2 0.0091641 92.838 By matching By MS/MS By MS/MS 1.33 0.471 2 1 1 1 1 10198000 6157000 727200 3313900 12616 331 13274 54865;54866;54867 45845;45846 45846 2 6157000 355450 748870 SSLNPILFR ADTENLLKAPTIVGKSSLNPILFRGVGMVA PTIVGKSSLNPILFRGVGMVADPDNPLVLD K S S F R G 0 1 1 0 0 0 0 0 0 1 2 0 0 1 1 2 0 0 0 0 0 0 9 0 1045.592 P39656 P39656 190 198 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes yes 2 0.00071379 113.89 By MS/MS By MS/MS 5 0 2 1 1 33989000 0 15377000 18612000 12617 779 13275 54868;54869 45847;45848 45848 2 0 3963700 2596000 SSLSSAQADFNQLAELDR LEEIKALREAHDAFRSSLSSAQADFNQLAE SSAQADFNQLAELDRQIKSFRVASNPYTWF R S S D R Q 3 1 1 2 0 2 1 0 0 0 3 0 0 1 0 4 0 0 0 0 0 0 18 0 1950.9283 Q13813 Q13813 2138 2155 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 9.0474E-115 267.67 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 58585000 0 27886000 30700000 12618 1268 13276 54870;54871;54872 45849;45850;45851 45849 3 0 13497000 6614700 SSLSVPYVIVPLK TTKRRHQQTVTIPPKSSLSVPYVIVPLKTG PKSSLSVPYVIVPLKTGLQEVEVKAAVYHH K S S L K T 0 0 0 0 0 0 0 0 0 1 2 1 0 0 2 3 0 0 1 3 0 0 13 0 1400.8279 P01024 P01024 892 904 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.0052262 99.815 By MS/MS 9.5 0.5 1 1 2 14477000 14477000 0 0 12619 371 13277 54873;54874 45852;45853 45853 2 11918000 0 0 SSMEKPVAQEPER KVEVKECRADPKDTKSSMEKPVAQEPERIE TKSSMEKPVAQEPERIEFGGNIKSSHEITE K S S E R I 1 1 0 0 0 1 3 0 0 0 0 1 1 0 2 2 0 0 0 1 0 0 13 1 1486.7086 Q96T23 Q96T23 338 350 RSF1 Remodeling and spacing factor 1 yes yes 3 0.0026856 86.405 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 17242000 0 3283500 13958000 12620 1837 13278 54875;54876;54877;54878;54879;54880 45854;45855;45856 45855 3 0 1557600 2865500 SSMTFLTR LKGMAAAGNYAWVNRSSMTFLTRQAFAKVF NYAWVNRSSMTFLTRQAFAKVFNTTPDDLD R S S T R Q 0 1 0 0 0 0 0 0 0 0 1 0 1 1 0 2 2 0 0 0 0 0 8 0 941.46405 Q9Y3I0 Q9Y3I0 322 329 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.0010681 120.92 By MS/MS By MS/MS 4 0 2 1 1 26503000 0 13778000 12726000 12621 2276 13279 54881;54882 45857;45858 45857 2 0 4572300 2078500 SSNADAEEKLDR HDPNSVVTKSAKKLRSSNADAEEKLDRSHD KLRSSNADAEEKLDRSHDKSDRGHDKSDRS R S S D R S 2 1 1 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 12 1 1333.611 O60828 O60828 94 105 PQBP1 Polyglutamine-binding protein 1 yes yes 2;3 2.922E-11 180.15 By matching By MS/MS 6.33 0.471 4 2 2 4 14792000 0 5127800 9664100 12622 234 13280 54883;54884;54885;54886;54887;54888 45859;45860 45860 2 0 1775100 1489000 SSNPMMVLQLPER MTGSWDKTLKFWDTRSSNPMMVLQLPERCY TRSSNPMMVLQLPERCYCADVIYPMAVVAT R S S E R C 0 1 1 0 0 1 1 0 0 0 2 0 2 0 2 2 0 0 0 1 0 0 13 0 1500.7429 P78406 P78406 160 172 RAE1 mRNA export factor yes yes 2 0.00032271 128.88 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 48467000 0 13731000 34735000 12623 1087 13281 54889;54890;54891 45861;45862 45862 2 0 3762000 4844900 SSPAAFINPPIGTVTPALK PRQVADAREKISLKRSSPAAFINPPIGTVT AFINPPIGTVTPALKLTKTIQVPQQKAMAP R S S L K L 3 0 1 0 0 0 0 1 0 2 1 1 0 1 4 2 2 0 0 1 0 0 19 0 1880.0407 Q9BY77 Q9BY77 126 144 POLDIP3 Polymerase delta-interacting protein 3 yes yes 2 4.2961E-06 107.65 By MS/MS By MS/MS 5.71 1.48 2 2 2 1 4 3 50156000 0 22731000 27425000 12624 1933 13282 54892;54893;54894;54895;54896;54897;54898 45863;45864;45865;45866;45867;45868 45865 4 0 8488400 4246600 SSPEVSSINQEALVLTAK RLISLPLSRIRVIMKSSPEVSSINQEALVL EVSSINQEALVLTAKATELFVQCLATYSYR K S S A K A 2 0 1 0 0 1 2 0 0 1 2 1 0 0 1 4 1 0 0 2 0 0 18 0 1871.984 Q9NRG0 Q9NRG0 30 47 CHRAC1 Chromatin accessibility complex protein 1 yes yes 2 2.9121E-08 116.51 By MS/MS By MS/MS 8.67 0.471 1 2 1 2 16652000 0 2474600 14178000 12625 2043 13283 54899;54900;54901 45869;45870;45871 45871 3 0 1981500 4529000 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR NQDKKNGAAKQSNPKSSPGQPEAGPEGAQE PAVEAEGPGSSQAPRKPEGAQARTAQSGAL K S S P R K 7 2 0 0 0 4 5 5 0 0 0 0 0 0 7 5 0 0 0 1 0 0 36 1 3483.6251 P40222 P40222 18 53 TXLNA Alpha-taxilin yes yes 3;4 1.3733E-49 122.63 By MS/MS 3 0 2 2 15706000 0 0 15706000 12626 782 13284 54902;54903 45872;45873 45872 2 0 0 3046200 SSPPVQFSLLHSK YILGEFGNLIAGDPRSSPPVQFSLLHSKFH PRSSPPVQFSLLHSKFHLCSVATRALLLST R S S S K F 0 0 0 0 0 1 0 0 1 0 2 1 0 1 2 4 0 0 0 1 0 0 13 0 1425.7616 O95782 O95782 517 529 AP2A1 AP-2 complex subunit alpha-1 yes yes 3 0.029089 53.377 By matching By MS/MS 2 0 2 1 1 8037500 2015200 0 6022300 12627 339 13285 54904;54905 45874 45874 1 2428100 0 1360900 SSPSILAVQR VQAKPPKVDGAEFWKSSPSILAVQRSAILK AEFWKSSPSILAVQRSAILKKQQQQQQQQQ K S S Q R S 1 1 0 0 0 1 0 0 0 1 1 0 0 0 1 3 0 0 0 1 0 0 10 0 1056.5928 O14646 O14646 89 98 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 0.0060141 95.909 By MS/MS 1 0 1 1 0 0 0 0 12628 141 13286 54906 45875 45875 1 0 0 0 SSPSVLIHSLGK PSLGKPGETSPPDSKSSPSVLIHSLGKSTT DSKSSPSVLIHSLGKSTTDNDVRIQQLQEI K S S G K S 0 0 0 0 0 0 0 1 1 1 2 1 0 0 1 4 0 0 0 1 0 0 12 0 1223.6874 Q9P0K7 Q9P0K7 411 422 RAI14 Ankycorbin yes yes 3 0.0052813 78.903 By MS/MS 2 0 1 1 5306400 0 0 5306400 12629 2115 13287 54907 45876 45876 1 0 0 1199100 SSPVVNDGVVR NNEDVDALMKSLQVKSSPVVNDGVVRLRGL LQVKSSPVVNDGVVRLRGLPYSCNEKDIVD K S S V R L 0 1 1 1 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 4 0 0 11 0 1127.5935 Q12849 Q12849 243 253 GRSF1 G-rich sequence factor 1 yes yes 2 1.0524E-10 126.24 By MS/MS 5 0 1 1 0 0 0 0 12630 1204 13288 54908 45877 45877 1 0 0 0 SSQQPSTPQQAPPGQPQQGTFVAHK STQPPKSAKPPAGGKSSQQPSTPQQAPPGQ APPGQPQQGTFVAHKEIKLTLLNKAADKGS K S S H K E 2 0 0 0 0 7 0 2 1 0 0 1 0 1 5 3 2 0 0 1 0 0 25 0 2630.2837 Q86VM9 Q86VM9 790 814 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 3 4.9295E-12 89.297 By MS/MS 1.5 0.5 1 1 2 15062000 0 0 15062000 12631 1553 13289 54909;54910 45878 45878 1 0 0 3344000 SSQSNYGQHGSGSSQSSGYGQHGSSSGQTTGFGQHR SGSGKSSGFGQHESRSSQSNYGQHGSGSSQ HGSSSGQTTGFGQHRSSSGQYSGFGQHGSG R S S H R S 0 1 1 0 0 6 0 9 3 0 0 0 0 1 0 11 2 0 2 0 0 0 36 0 3613.5187 CON__Q5D862;Q5D862 CON__Q5D862 994 1029 FLG2 Filaggrin-2 yes no 4;5 2.1104E-32 105.98 By MS/MS By MS/MS By MS/MS 5.26 3.09 5 2 4 4 2 2 3 2 3 4 18 2 11 123500000 77905000 2914500 42678000 + 12632 90 13290 54911;54912;54913;54914;54915;54916;54917;54918;54919;54920;54921;54922;54923;54924;54925;54926;54927;54928;54929;54930;54931;54932;54933;54934;54935;54936;54937;54938;54939;54940;54941 45879;45880;45881;45882;45883;45884;45885;45886;45887;45888;45889;45890;45891;45892;45893;45894;45895;45896;45897;45898;45899;45900;45901;45902;45903;45904;45905;45906 45888 28 77451000 3908600 18857000 SSQSSSQQFSGIGR GAGTYGASSTTSTGRSSQSSSQQFSGIGRS RSSQSSSQQFSGIGRSGQQPQPLMSQQFAQ R S S G R S 0 1 0 0 0 3 0 2 0 1 0 0 0 1 0 6 0 0 0 0 0 0 14 0 1454.675 Q92841 Q92841 671 684 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 1.287E-72 244.16 By MS/MS By MS/MS By MS/MS 3.25 2.38 2 1 3 1 1 1 5 2 175910000 10339000 83693000 81874000 12633 1725 13291 54942;54943;54944;54945;54946;54947;54948;54949 45907;45908;45909;45910;45911;45912;45913 45910 7 11929000 37657000 16044000 SSQSTDGNGTGSLVR S S V R 0 1 1 1 0 1 0 3 0 0 1 0 0 0 0 4 2 0 0 1 0 0 15 0 1464.6805 REV__Q9NQI0 yes yes 2 0.0039232 85.807 By MS/MS By MS/MS By MS/MS 2.17 1.07 4 4 2 2 3 5 4 222460000 32518000 104520000 85424000 + 12634 2342 13292 54950;54951;54952;54953;54954;54955;54956;54957;54958;54959;54960;54961 45914;45915;45916;45917;45918;45919;45920 45914 7 32905000 45617000 16721000 SSSDHHFNQTIGSASPSTAR GLSSLGGTASIGHMRSSSDHHFNQTIGSAS HFNQTIGSASPSTARSRITKYSTVQYSK__ R S S A R S 2 1 1 1 0 1 0 1 2 1 0 0 0 1 1 6 2 0 0 0 0 0 20 0 2085.9464 Q02413 Q02413 1017 1036 DSG1 Desmoglein-1 yes yes 3 0.020809 41.136 By MS/MS 5 0 1 1 2230100 2230100 0 0 12635 1146 13293 54962 45921 45921 0 1786600 0 0 SSSGLLEWESK KRPSSVKVFSGKSERSSSGLLEWESKSDAL KSERSSSGLLEWESKSDALETLGFLNHYQM R S S S K S 0 0 0 0 0 0 2 1 0 0 2 1 0 0 0 4 0 1 0 0 0 0 11 0 1221.5877 P14866 P14866 542 552 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 6.1187E-07 154.01 By MS/MS By MS/MS By MS/MS 4.33 1.56 1 2 3 2 1 1 4 4 273800000 20230000 66789000 186780000 12636 565 13294 54963;54964;54965;54966;54967;54968;54969;54970;54971 45922;45923;45924;45925;45926;45927;45928 45922 7 15783000 23555000 33635000 SSSGQSSGYTQHGSGSGHSSSYEQHGSR RHGSGSGQSSGFGHKSSSGQSSGYTQHGSG SGSGHSSSYEQHGSRSGQSSRSEQHGSSSG K S S S R S 0 1 0 0 0 3 1 6 3 0 0 0 0 0 0 11 1 0 2 0 0 0 28 0 2825.1622 CON__Q86YZ3;Q86YZ3 CON__Q86YZ3 936 963 HRNR Hornerin yes no 4;5 0.01086 30.135 By MS/MS 8.25 1.3 2 1 1 4 3096700 0 0 3096700 + 12637 96 13295 54972;54973;54974;54975 45929;45930;45931 45929 3 0 0 2033600 SSSNSGSTGFISFSGVESALSSLK ______________________________ FISFSGVESALSSLKNFQACINSGMDTASS R S S L K N 1 0 1 0 0 0 1 3 0 1 2 1 0 2 0 10 1 0 0 1 0 0 24 0 2335.1179 Q96MF7 Q96MF7 5 28 NSMCE2 E3 SUMO-protein ligase NSE2 yes yes 2 0.00012895 72.634 By MS/MS 6 0 1 1 1066300 0 0 1066300 12638 1810 13296 54976 45932 45932 1 0 0 159520 SSSPAPADIAQTVQEDLR PEPVLEETAPEDAQKSSSPAPADIAQTVQE PAPADIAQTVQEDLRTFSWASVTSKNLPPS K S S L R T 3 1 0 2 0 2 1 0 0 1 1 0 0 0 2 3 1 0 0 1 0 0 18 0 1883.9225 Q13283 Q13283 230 247 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 1.2081E-09 159.93 By MS/MS By MS/MS 3.7 1.49 1 1 2 4 2 5 5 91096000 0 32129000 58968000 12639 1236 13297 54977;54978;54979;54980;54981;54982;54983;54984;54985;54986 45933;45934;45935;45936;45937;45938;45939;45940 45934 8 0 11092000 10210000 SSSPVNVKK ______________________________ ______________________________ M S S K K L 0 0 1 0 0 0 0 0 0 0 0 2 0 0 1 3 0 0 0 2 0 0 9 1 944.5291 Q00839 Q00839 2 10 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 0.022194 51.346 By MS/MS 2 0 1 1 0 0 0 0 12640 1127 13298 54987 45941 45941 1 0 0 0 SSSQVPPILQETDK STEPSVILSKSDSDKSSSQVPPILQETDKS KSSSQVPPILQETDKSKSNTKQNSVPPSQT K S S D K S 0 0 0 1 0 2 1 0 0 1 1 1 0 0 2 3 1 0 0 1 0 0 14 0 1527.7781 Q86UE4 Q86UE4 532 545 MTDH Protein LYRIC yes yes 2 0.045445 65.395 By MS/MS 3 0 1 1 5208700 0 5208700 0 12641 1546 13299 54988 45942 45942 1 0 2220500 0 SSSSSAASDTATSTQRPLR GYAILLAVPGSSDSRSSSSSAASDTATSTQ SAASDTATSTQRPLRNLVSYLKQKQAAGVI R S S L R N 3 2 0 1 0 1 0 0 0 0 1 0 0 0 1 7 3 0 0 0 0 0 19 1 1908.9137 Q96T37 Q96T37 871 889 RBM15 Putative RNA-binding protein 15 yes yes 3 0.0027091 60.528 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 6116300 0 755940 5360300 12642 1838 13300 54989;54990;54991;54992 45943;45944;45945 45945 3 0 322260 1137300 SSSSSSQPEHSAMLVSTAASPSLIK LFISCKSSHDRCLEKSSSSSSQPEHSAMLV SAMLVSTAASPSLIKETTTGYYKDIVENIC K S S I K E 3 0 0 0 0 1 1 0 1 1 2 1 1 0 2 10 1 0 0 1 0 0 25 0 2488.2115 P42166 P42166 291 315 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 3 0.0016879 45.042 By MS/MS 3 0 1 1 14459000 0 0 14459000 12643 798 13301 54993 45946 45946 1 0 0 2804400 SSTAISSIAADGEFLHELEEK QQRLEYIARAILSAKSSTAISSIAADGEFL SIAADGEFLHELEEKMEVARIQLQIQETLQ K S S E K M 3 0 0 1 0 0 4 1 1 2 2 1 0 1 0 4 1 0 0 0 0 0 21 0 2233.075 O75694 O75694 1127 1147 NUP155 Nuclear pore complex protein Nup155 yes yes 3 4.0705E-06 86.189 By MS/MS 1.5 0.5 1 1 2 16324000 0 0 16324000 12644 281 13302 54994;54995 45947 45947 1 0 0 3664300 SSTATHPPGPAVQLNK DTPFLPKPLFFRRAKSSTATHPPGPAVQLN STATHPPGPAVQLNKTPSSSKKVTFGLNRN K S S N K T 2 0 1 0 0 1 0 1 1 0 1 1 0 0 3 2 2 0 0 1 0 0 16 0 1603.8318 Q14684 Q14684 661 676 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.04514 37.657 By MS/MS 2.5 0.5 1 1 2 15966000 0 0 15966000 12645 1313 13303 54996;54997 45948 45948 1 0 0 3272200 SSTFSDVEAHFR KPGEMPYVCQVCQFRSSTFSDVEAHFRAAH QFRSSTFSDVEAHFRAAHENTKNLLCPFCL R S S F R A 1 1 0 1 0 0 1 0 1 0 0 0 0 2 0 3 1 0 0 1 0 0 12 0 1381.6262 Q8ND82 Q8ND82 422 433 ZNF280C Zinc finger protein 280C yes yes 3 0.00092533 103.08 By MS/MS 3 0 1 1 4869600 0 0 4869600 12646 1634 13304 54998 45949 45949 1 0 0 944480 SSTGPEPPAPTPLLAER KKEKSATRPSPSPERSSTGPEPPAPTPLLA TGPEPPAPTPLLAERHGGSPQPLATTPLSQ R S S E R H 2 1 0 0 0 0 2 1 0 0 2 0 0 0 5 2 2 0 0 0 0 0 17 0 1718.8839 Q9UQ35 Q9UQ35 357 373 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0021342 86.467 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 25565000 0 9685300 15880000 12647 2219 13305 54999;55000;55001;55002 45950;45951;45952 45952 3 0 4549200 3467400 SSTPLPTISSSAENTR EKKLLKLREQGTESRSSTPLPTISSSAENT STPLPTISSSAENTRQNGSNDSDRYSDNEE R S S T R Q 1 1 1 0 0 0 1 0 0 1 1 0 0 0 2 5 3 0 0 0 0 0 16 0 1646.8111 P42166;P42167 P42166 158 173 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2 3.8349E-19 194.39 By MS/MS By MS/MS 4.22 1.87 1 1 1 2 1 2 1 3 6 311230000 0 58691000 252540000 12648 798;799 13306 55003;55004;55005;55006;55007;55008;55009;55010;55011 45953;45954;45955;45956;45957;45958;45959;45960;45961;45962;45963;45964;45965 45960 13 0 18583000 43311000 SSTPTTIFPIR MVCGGGPALTLWHLRSSTPTTIFPIRAPQK WHLRSSTPTTIFPIRAPQKHVTFYQDLILS R S S I R A 0 1 0 0 0 0 0 0 0 2 0 0 0 1 2 2 3 0 0 0 0 0 11 0 1218.6608 Q86W42 Q86W42 248 258 THOC6 THO complex subunit 6 homolog yes yes 2 0.0011476 112.84 By matching By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 44925000 1171700 6960000 36794000 12649 1555 13307 55012;55013;55014;55015 45966;45967 45967 2 1560100 2409300 5650000 SSTQLHELTPHHQSGGER EDYDKYGIRIRVKFRSSTQLHELTPHHQSG QLHELTPHHQSGGERSVSTMLYLMALQELN R S S E R S 0 1 0 0 0 2 2 2 3 0 2 0 0 0 1 3 2 0 0 0 0 0 18 0 1999.946 Q8IY18 Q8IY18 979 996 SMC5 Structural maintenance of chromosomes protein 5 yes yes 4 0.010012 48.547 By MS/MS 1.5 0.5 1 1 2 2445300 0 0 2445300 12650 1588 13308 55016;55017 45968;45969 45968 2 0 0 541870 SSVAVLTQESFAEHR ______________________________ SSVAVLTQESFAEHRSGLVPQQIKVATLNS M S S H R S 2 1 0 0 0 1 2 0 1 0 1 0 0 1 0 3 1 0 0 2 0 0 15 0 1659.8216 Q00341 Q00341 2 16 HDLBP Vigilin yes yes 2 2.161E-110 211.37 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 21343000 0 14481000 6862800 12651 1122 13309 55018;55019;55020;55021 45970;45971;45972;45973 45972 4 0 6691100 1550800 SSVINTLR KQISVGFIGYPNVGKSSVINTLRSKKVCNV GYPNVGKSSVINTLRSKKVCNVAPIAGETK K S S L R S 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 0 0 1 0 0 8 0 888.50288 Q13823 Q13823 324 331 GNL2 Nucleolar GTP-binding protein 2 yes yes 2 0.044768 74.255 By MS/MS 2 0 1 1 8018100 0 8018100 0 12652 1269 13310 55022 45974 45974 1 0 3610600 0 SSVNCPFSSQDMK RKILTTEGRNALIHKSSVNCPFSSQDMKYP HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR K S S M K Y 0 0 1 1 1 1 0 0 0 0 0 1 1 1 1 4 0 0 0 1 0 0 13 0 1485.6228 Q08211 Q08211 1025 1037 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00029885 136.49 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 20723000 0 7166600 13557000 12653 1182 13311 55023;55024;55025 45975;45976 45976 2 0 3289500 3063600 SSVTSAAAVSALAGVQDQLIEK RRNRKFKEAERLFSKSSVTSAAAVSALAGV AVSALAGVQDQLIEKREPGSGTESDTSPDF K S S E K R 5 0 0 1 0 2 1 1 0 1 2 1 0 0 0 4 1 0 0 3 0 0 22 0 2144.1325 Q9HAF1 Q9HAF1 92 113 MEAF6 Chromatin modification-related protein MEAF6 yes yes 2;3 4.3983E-24 171.67 By MS/MS By MS/MS 7 0 3 1 2 39252000 0 2164000 37088000 12654 2001 13312 55026;55027;55028 45977;45978;45979 45978 3 0 1242600 6581000 SSVVGGFVSHYLLEK SSRFGKFVEIHFNEKSSVVGGFVSHYLLEK SSVVGGFVSHYLLEKSRICVQGKEERNYHI K S S E K S 0 0 0 0 0 0 1 2 1 0 2 1 0 1 0 3 0 0 1 3 0 0 15 0 1620.8512 Q9UM54 Q9UM54 218 232 MYO6 Unconventional myosin-VI yes yes 2;3 0.00048675 110.8 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 18128000 0 8560100 9568000 12655 2198 13313 55029;55030;55031;55032 45980;45981;45982 45981 3 0 3891600 2162200 SSYYVVSGNDPAAEEPSR SNSKNVDVEFFKRVRSSYYVVSGNDPAAEE YVVSGNDPAAEEPSRAVLDALLEGKAQWGS R S S S R A 2 1 1 1 0 0 2 1 0 0 0 0 0 0 2 4 0 0 2 2 0 0 18 0 1926.8595 P46821 P46821 2382 2399 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 1.6739E-30 200.13 By matching By MS/MS 6 0 2 1 1 22270000 0 1394300 20875000 12656 834 13314 55033;55034 45983 45983 1 0 482660 3123200 STAAEVQQVLNR KHKDLLGKRYIELFRSTAAEVQQVLNRFSS LFRSTAAEVQQVLNRFSSAPLIPLPTPPII R S T N R F 2 1 1 0 0 2 1 0 0 0 1 0 0 0 0 1 1 0 0 2 0 0 12 0 1314.6892 Q6NXG1;Q9H6T0 Q6NXG1 404 415 ESRP1;ESRP2 Epithelial splicing regulatory protein 1;Epithelial splicing regulatory protein 2 yes no 2 0.00012285 138.11 By MS/MS 3 0 1 1 1975500 0 1975500 0 12657 1482 13315 55035 45984 45984 1 0 842160 0 STAGDTHLGGEDFDNR DVSILTIEDGIFEVKSTAGDTHLGGEDFDN TAGDTHLGGEDFDNRMVNHFIAEFKRKHKK K S T N R M 1 1 1 3 0 0 1 3 1 0 1 0 0 1 0 1 2 0 0 0 0 0 16 0 1690.7183 P54652;P11142 P11142 221 236 HSPA2;HSPA8 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein no no 2;3 1.2577E-60 238.07 By MS/MS By MS/MS By MS/MS 4.15 2.43 3 4 8 2 2 3 2 1 1 1 3 6 18 597190000 32330000 112970000 451890000 12658 517;930 13316 55036;55037;55038;55039;55040;55041;55042;55043;55044;55045;55046;55047;55048;55049;55050;55051;55052;55053;55054;55055;55056;55057;55058;55059;55060;55061;55062 45985;45986;45987;45988;45989;45990;45991;45992;45993;45994;45995;45996;45997;45998;45999;46000;46001;46002;46003 45996 19 37190000 48703000 93993000 STAGNFLVNPLEPK EQEQEHNGPLDNKGKSTAGNFLVNPLEPKN KSTAGNFLVNPLEPKNAEKLKVKIADLGNA K S T P K N 1 0 2 0 0 0 1 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1485.7827 Q96SB4 Q96SB4 473 486 SRPK1 SRSF protein kinase 1 yes yes 2 0.0029192 97.163 By MS/MS 3.5 0.5 1 1 2 13155000 0 13155000 0 12659 1832 13317 55063;55064 46004 46004 1 0 5485500 0 STAISLFYELSENDLNFIK TDTRKDEQERCITIKSTAISLFYELSENDL SLFYELSENDLNFIKQSKDGAGFLINLIDS K S T I K Q 1 0 2 1 0 0 2 0 0 2 3 1 0 2 0 3 1 0 1 0 0 0 19 0 2203.1049 P13639 P13639 72 90 EEF2 Elongation factor 2 yes yes 2 6.2777E-17 179.67 By MS/MS 2 0 1 1 4726300 0 0 4726300 12660 547 13318 55065 46005 46005 1 0 0 1068100 STANVLEETTVK EKMKSEEQPMDLENRSTANVLEETTVKKEK ENRSTANVLEETTVKKEKEDEKELVKLPVI R S T V K K 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 12 0 1290.6667 Q96T23 Q96T23 266 277 RSF1 Remodeling and spacing factor 1 yes yes 2 0.064599 69.276 By MS/MS 1 0 1 1 5015300 0 5015300 0 12661 1837 13319 55066 46006 46006 1 0 2451400 0 STANVLEETTVKK EKMKSEEQPMDLENRSTANVLEETTVKKEK NRSTANVLEETTVKKEKEDEKELVKLPVIV R S T K K E 1 0 1 0 0 0 2 0 0 0 1 2 0 0 0 1 3 0 0 2 0 0 13 1 1418.7617 Q96T23 Q96T23 266 278 RSF1 Remodeling and spacing factor 1 yes yes 2;3 2.4351E-05 162.38 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 43194000 0 6528000 36666000 12662 1837 13320 55067;55068;55069;55070 46007;46008;46009 46007 3 0 3190800 7930800 STAPLLDVFSSMLK DSEEQQESARAVPEKSTAPLLDVFSSMLKD KSTAPLLDVFSSMLKDTTSQHRAHLFDLNC K S T L K D 1 0 0 1 0 0 0 0 0 0 3 1 1 1 1 3 1 0 0 1 0 0 14 0 1507.7956 Q9BTC0 Q9BTC0 825 838 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0064463 86.313 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 17392000 0 2417100 14975000 12663 1900 13321 55071;55072;55073;55074;55075;55076 46010;46011;46012;46013 46012 4 0 1135000 3221300 STATTVAPAGIPATPGPVNPPPPEVSNPSKPGR ______________________________ NPPPPEVSNPSKPGRKTNQLQYMQNVVVKT M S T G R K 4 1 2 0 0 0 1 3 0 1 0 1 0 0 10 3 4 0 0 3 0 0 33 1 3160.6517 Q15059 Q15059 2 34 BRD3 Bromodomain-containing protein 3 yes yes 3 2.3331E-34 111.24 By MS/MS 2.5 0.5 1 1 2 6197800 0 6197800 0 12664 1342 13322 55077;55078 46014 46014 1 0 2761400 0 STAYEDYYYHPPPR DKKRKERQAARQASRSTAYEDYYYHPPPRM RSTAYEDYYYHPPPRMPPPIRGRGRGGGRG R S T P R M 1 1 0 1 0 0 1 0 1 0 0 0 0 0 3 1 1 0 4 0 0 0 14 0 1757.7686 O43390 O43390 428 441 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2;3 5.108E-47 201.48 By MS/MS By MS/MS By MS/MS 3.93 1.87 1 1 5 3 2 1 1 1 7 6 526810000 11422000 222650000 292740000 12665 195 13323 55079;55080;55081;55082;55083;55084;55085;55086;55087;55088;55089;55090;55091;55092 46015;46016;46017;46018;46019;46020;46021;46022;46023;46024;46025;46026;46027;46028;46029;46030;46031;46032;46033 46023 19 13178000 85351000 55755000 STDAYELK NVHHQFQKLLTEFNKSTDAYELKIANKLFG LLTEFNKSTDAYELKIANKLFGEKTYLFLQ K S T L K I 1 0 0 1 0 0 1 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 8 0 925.43928 P29508;P48594 P29508 95 102 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 0.019677 84.568 By MS/MS 9.5 0.5 1 1 2 6661400 6661400 0 0 12666 700 13324 55093;55094 46034;46035 46035 2 7315700 0 0 STDFAPIKEDFGQEK EMTSTSLYQDKQEGKSTDFAPIKEDFGQEK STDFAPIKEDFGQEKKTDDVEAMSSQPALA K S T E K K 1 0 0 2 0 1 2 1 0 1 0 2 0 2 1 1 1 0 0 0 0 0 15 1 1710.8101 P46821 P46821 1462 1476 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 1.6977E-33 209.43 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 23615000 0 5041100 18574000 12667 834 13325 55095;55096;55097 46036;46037 46037 2 0 2464000 4019900 STDTGVSLPSYEEDQGSK ______________________________ TGVSLPSYEEDQGSKLIRKAKEAPFVPVGI M S T S K L 0 0 0 2 0 1 2 2 0 0 1 1 0 0 1 4 2 0 1 1 0 0 18 0 1898.8381 Q9Y241 Q9Y241 2 19 HIGD1A HIG1 domain family member 1A, mitochondrial yes yes 2 3.6054E-10 161.48 By MS/MS 9 0 1 1 7500000 0 0 7500000 12668 2231 13326 55098 46038 46038 1 0 0 2395800 STDYGIFQINSR SGYNTRATNYNAGDRSTDYGIFQINSRYWC GDRSTDYGIFQINSRYWCNDGKTPGAVNAC R S T S R Y 0 1 1 1 0 1 0 1 0 2 0 0 0 1 0 2 1 0 1 0 0 0 12 0 1399.6732 P61626 P61626 69 80 LYZ Lysozyme C yes yes 2 1.2559E-72 241.13 By MS/MS By MS/MS By MS/MS 6.24 2.76 1 2 2 1 1 3 3 3 2 3 10 6 5 1960600000 1935000000 7972100 17686000 12669 997 13327 55099;55100;55101;55102;55103;55104;55105;55106;55107;55108;55109;55110;55111;55112;55113;55114;55115;55116;55117;55118;55119 46039;46040;46041;46042;46043;46044;46045;46046;46047;46048;46049;46050;46051;46052;46053;46054;46055;46056;46057;46058;46059 46043 21 2081500000 14799000 11066000 STEEAFEVFWR NHNMYVAGCTEVEVKSTEEAFEVFWRGQKK VEVKSTEEAFEVFWRGQKKRRIANTHLNRE K S T W R G 1 1 0 0 0 0 3 0 0 0 0 0 0 2 0 1 1 1 0 1 0 0 11 0 1399.6408 Q02241 Q02241 272 282 KIF23 Kinesin-like protein KIF23 yes yes 2 0.000328 128 By MS/MS 2 0 1 1 2562700 0 0 2562700 12670 1145 13328 55120 46060 46060 1 0 0 579120 STEEQELEK HTVPCMPPAKQKFLKSTEEQELEKSMKMQQ KQKFLKSTEEQELEKSMKMQQEVVEMRKKN K S T E K S 0 0 0 0 0 1 4 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 9 0 1091.4982 Q9ULW0 Q9ULW0 209 217 TPX2 Targeting protein for Xklp2 yes yes 2 0.0021615 105.14 By MS/MS By matching 2.5 0.5 1 1 1 1 5635900 0 2813100 2822900 12671 2193 13329 55121;55122 46061 46061 1 0 1266800 547500 STELLIR RPGTVALREIRRYQKSTELLIRKLPFQRLV REIRRYQKSTELLIRKLPFQRLVREIAQDF K S T I R K 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 0 7 0 830.48617 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 58 64 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2 4.9561E-18 189.97 By MS/MS By MS/MS By MS/MS 6.12 2.8 3 2 3 1 2 4 4 6 4 3 8 13 11 11736000000 352930000 3587400000 7795400000 12672 1114;1512 13330 55123;55124;55125;55126;55127;55128;55129;55130;55131;55132;55133;55134;55135;55136;55137;55138;55139;55140;55141;55142;55143;55144;55145;55146;55147;55148;55149;55150;55151;55152;55153;55154 46062;46063;46064;46065;46066;46067;46068;46069;46070;46071;46072;46073;46074;46075;46076;46077;46078;46079;46080;46081;46082;46083;46084;46085;46086;46087;46088;46089;46090;46091;46092;46093;46094;46095;46096;46097;46098;46099;46100;46101;46102;46103;46104;46105;46106;46107;46108;46109;46110;46111;46112;46113;46114 46083 53 348750000 2154700000 2083200000 STELLIRK RPGTVALREIRRYQKSTELLIRKLPFQRLV EIRRYQKSTELLIRKLPFQRLVREIAQDFK K S T R K L 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 0 0 0 8 1 958.58113 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 58 65 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2 0.0024537 116.3 By MS/MS By matching 7.67 0.471 1 2 2 1 30284000 0 16161000 14123000 12673 1114;1512 13331 55155;55156;55157 46115 46115 1 0 8157900 2165200 STELLIRKLPFQR RPGTVALREIRRYQKSTELLIRKLPFQRLV QKSTELLIRKLPFQRLVREIAQDFKTDLRF K S T Q R L 0 2 0 0 0 1 1 0 0 1 3 1 0 1 1 1 1 0 0 0 0 0 13 2 1599.9461 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 58 70 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 3;4 1.5554E-05 158.2 By MS/MS By MS/MS 8 0 4 2 2 59226000 0 28309000 30916000 12674 1114;1512 13332 55158;55159;55160;55161 46116;46117;46118 46116 2 0 12880000 4739800 STESLQANVQR ARTIGISVDPRRRNKSTESLQANVQRLKEY RRNKSTESLQANVQRLKEYRSKLILFPRKP K S T Q R L 1 1 1 0 0 2 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 0 11 0 1231.6157 P26373 P26373 106 116 RPL13 60S ribosomal protein L13 yes yes 2 5.9498E-90 256.03 By MS/MS By MS/MS By MS/MS 5.6 2.67 2 1 2 2 2 3 3 2 1 2 2 9 9 466890000 18762000 127570000 320560000 12675 669 13333 55162;55163;55164;55165;55166;55167;55168;55169;55170;55171;55172;55173;55174;55175;55176;55177;55178;55179;55180;55181 46119;46120;46121;46122;46123;46124;46125;46126;46127;46128;46129;46130;46131;46132;46133;46134;46135;46136;46137 46129 19 38889000 62253000 59884000 STFREESPLR DYSPPLHKNLDAREKSTFREESPLRIKMIA DAREKSTFREESPLRIKMIASDSHRPEVKL K S T L R I 0 2 0 0 0 0 2 0 0 0 1 0 0 1 1 2 1 0 0 0 0 0 10 1 1220.6149 Q9NYF8 Q9NYF8 525 534 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.00084019 101.39 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 13978000 0 4856800 9121100 12676 2097 13334 55182;55183;55184;55185 46138;46139;46140 46138 3 0 2187100 1912900 STFSTNYR ______________________________ ______________________________ R S T Y R S 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 2 2 0 1 0 0 0 8 0 974.44576 P05783 P05783 7 14 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 3.9055E-10 174.21 By MS/MS By MS/MS By MS/MS 4.92 2.49 1 1 2 2 3 1 1 1 1 1 7 5 368130000 19621000 127800000 220700000 12677 436 13335 55186;55187;55188;55189;55190;55191;55192;55193;55194;55195;55196;55197;55198 46141;46142;46143;46144;46145;46146;46147;46148;46149;46150 46145 10 15719000 46472000 32640000 STFVLDEFK AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE FAHLPKSTFVLDEFKRKYSNEDTLSVALPY K S T F K R 0 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 9 0 1084.5441 P26641 P26641 286 294 EEF1G Elongation factor 1-gamma yes yes 2 0.016181 84.743 By MS/MS 5 0 1 1 16453000 0 0 16453000 12678 674 13336 55199 46151 46151 1 0 0 2294900 STFVLDEFKR AAEPKAKDPFAHLPKSTFVLDEFKRKYSNE AHLPKSTFVLDEFKRKYSNEDTLSVALPYF K S T K R K 0 1 0 1 0 0 1 0 0 0 1 1 0 2 0 1 1 0 0 1 0 0 10 1 1240.6452 P26641 P26641 286 295 EEF1G Elongation factor 1-gamma yes yes 2;3 4.582E-62 236.21 By matching By MS/MS By MS/MS 4.8 1.08 1 3 4 1 1 1 4 5 184360000 10969000 42218000 131180000 12679 674 13337 55200;55201;55202;55203;55204;55205;55206;55207;55208;55209 46152;46153;46154;46155;46156 46152 5 12656000 11336000 18806000 STGASFIR NKFKTQLNLLLDKLRSTGASFIRCIKPNLK LLLDKLRSTGASFIRCIKPNLKMTSHHFEG R S T I R C 1 1 0 0 0 0 0 1 0 1 0 0 0 1 0 2 1 0 0 0 0 0 8 0 837.43447 Q9UM54 Q9UM54 660 667 MYO6 Unconventional myosin-VI yes yes 2 0.00043146 130.04 By MS/MS 1.5 0.5 1 1 2 3606000 0 3606000 0 12680 2198 13338 55210;55211 46157 46157 1 0 1667100 0 STGEAFVQFASK IVPNGITLTMDYQGRSTGEAFVQFASKEIA QGRSTGEAFVQFASKEIAENALGKHKERIG R S T S K E 2 0 0 0 0 1 1 1 0 0 0 1 0 2 0 2 1 0 0 1 0 0 12 0 1270.6194 P31942 P31942 56 67 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 6.8802E-12 175.93 By MS/MS By MS/MS By MS/MS 7.27 1.95 1 2 4 1 2 2 3 2 6 7 522960000 38390000 216300000 268270000 12681 721 13339 55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222;55223;55224;55225;55226 46158;46159;46160;46161;46162;46163;46164;46165;46166;46167;46168;46169;46170;46171 46162 14 51637000 104570000 74348000 STGEAFVQFASQEIAEK IVPNGITLPVDFQGRSTGEAFVQFASQEIA GEAFVQFASQEIAEKALKKHKERIGHRYIE R S T E K A 3 0 0 0 0 2 3 1 0 1 0 1 0 2 0 2 1 0 0 1 0 0 17 0 1840.8843 P31943;P55795 P31943 151 167 HNRNPH1;HNRNPH2 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2 no no 2;3 7.6418E-76 244.73 By MS/MS By MS/MS By MS/MS 4.11 1.79 2 2 2 4 4 2 2 2 7 9 825530000 35987000 132290000 657260000 12682 722;944 13340 55227;55228;55229;55230;55231;55232;55233;55234;55235;55236;55237;55238;55239;55240;55241;55242;55243;55244 46172;46173;46174;46175;46176;46177;46178;46179;46180;46181;46182;46183;46184;46185;46186;46187;46188;46189;46190;46191 46178 20 28192000 37937000 103680000 STGGAPTFNVTVTK SLLQDGEFSMDLRTKSTGGAPTFNVTVTKT KSTGGAPTFNVTVTKTDKTLVLLMGKEGVH K S T T K T 1 0 1 0 0 0 0 2 0 0 0 1 0 1 1 1 4 0 0 2 0 0 14 0 1378.7092 P07737 P07737 92 105 PFN1 Profilin-1 yes yes 2 0.0025072 99.276 By MS/MS By MS/MS 9.4 0.8 1 1 3 2 3 71506000 0 18245000 53261000 12683 463 13341 55245;55246;55247;55248;55249 46192;46193;46194;46195 46193 4 0 51134000 94082000 STGGDFGNPLRK ______________________________ ______________________________ M S T R K F 0 1 1 1 0 0 0 3 0 0 1 1 0 1 1 1 1 0 0 0 0 0 12 1 1247.6258 P20340 P20340 2 13 RAB6A Ras-related protein Rab-6A yes yes 2 0.057151 58.246 By MS/MS 7 0 1 1 3786500 0 3786500 0 12684 615 13342 55250 46196 46196 1 0 2174200 0 STGLILDSGATHTTAIPVHDGYVLQQGIVK FLCKTAVLTAFANGRSTGLILDSGATHTTA IPVHDGYVLQQGIVKSPLAGDFITMQCREL R S T V K S 2 0 0 2 0 2 0 4 2 3 3 1 0 0 1 2 4 0 1 3 0 0 30 0 3090.635 O96019 O96019 165 194 ACTL6A Actin-like protein 6A yes yes 3 3.6267E-52 161.68 By MS/MS 5 0 1 1 9712000 0 9712000 0 12685 354 13343 55251 46197 46197 1 0 2503500 0 STGNFLTLTQAIDK RANGHLLLNSEKMSKSTGNFLTLTQAIDKF KSTGNFLTLTQAIDKFSADGMRLALADAGD K S T D K F 1 0 1 1 0 1 0 1 0 1 2 1 0 1 0 1 3 0 0 0 0 0 14 0 1507.7882 Q9P2J5 Q9P2J5 720 733 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.024362 72.272 By MS/MS 2 0 1 1 4808300 0 0 4808300 12686 2124 13344 55252 46198 46198 1 0 0 1086600 STGNFLTLTQAIDKFSADGMR RANGHLLLNSEKMSKSTGNFLTLTQAIDKF TLTQAIDKFSADGMRLALADAGDTVEDANF K S T M R L 2 1 1 2 0 1 0 2 0 1 2 1 1 2 0 2 3 0 0 0 0 0 21 1 2272.1158 Q9P2J5 Q9P2J5 720 740 LARS Leucine--tRNA ligase, cytoplasmic yes yes 3 6.131E-06 84.762 By MS/MS 2 0 1 1 2489800 0 2489800 0 12687 2124 13345 55253 46199 46199 1 0 1121200 0 STGSTSSQTQPGTGWVQF QPNPATADIWGDFTKSTGSTSSQTQPGTGW STSSQTQPGTGWVQF_______________ K S T Q F - 0 0 0 0 0 3 0 3 0 0 0 0 0 1 1 4 4 1 0 1 0 0 18 0 1854.8384 Q9NVZ3 Q9NVZ3 246 263 NECAP2 Adaptin ear-binding coat-associated protein 2 yes yes 2 0.00075555 92.606 By MS/MS 6 0 1 1 3319300 3319300 0 0 12688 2074 13346 55254 46200 46200 1 4419700 0 0 STGTLLNNAIK LTWLAQKQKSNGCFRSTGTLLNNAIKGGVD GCFRSTGTLLNNAIKGGVDDEVTLSAYITI R S T I K G 1 0 2 0 0 0 0 1 0 1 2 1 0 0 0 1 2 0 0 0 0 0 11 0 1130.6295 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1086 1096 yes yes 2 0.00032845 131.22 By MS/MS By MS/MS By matching 5 2.78 1 1 1 3 1 2 4 1 38304000 15573000 16427000 6304500 + 12689 28 13347 55255;55256;55257;55258;55259;55260;55261 46201;46202;46203;46204;46205 46202 5 18829000 20862000 943230 STHEQDFYVTPETVVR YIFFKAKWETSFNLKSTHEQDFYVTPETVV THEQDFYVTPETVVRVPMMKQQDQFYYLLD K S T V R V 0 1 0 1 0 1 2 0 1 0 0 0 0 1 1 1 3 0 1 3 0 0 16 0 1906.9061 CON__Q9N2I2 CON__Q9N2I2 213 228 yes yes 3 0.0042564 63.543 By MS/MS 7 0.816 1 1 1 3 15799000 0 0 15799000 + 12690 98 13348 55262;55263;55264 46206;46207;46208 46207 3 0 0 2602600 STIGGQIMYLTGMVDKR EHVNVVFIGHVDAGKSTIGGQIMYLTGMVD IGGQIMYLTGMVDKRTLEKYEREAKEKNRE K S T K R T 0 1 0 1 0 1 0 3 0 2 1 1 2 0 0 1 2 0 1 1 0 0 17 1 1868.9488 P15170 P15170 88 104 GSPT1 Eukaryotic peptide chain release factor GTP-binding subunit ERF3A yes yes 3 0.0045366 58.98 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 8751200 0 2963600 5787500 12691 568 13349 55265;55266;55267 46209;46210 46209 2 0 1263400 1201000 STIGVEFATR LLSRFTRNEFNLESKSTIGVEFATRSIQVD NLESKSTIGVEFATRSIQVDGKTIKAQIWD K S T T R S 1 1 0 0 0 0 1 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 10 0 1079.5611 Q15907;P62491 Q15907 42 51 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 2 0.0071951 93.178 By matching By MS/MS By MS/MS 7 0 3 1 1 1 16443000 2433900 4564700 9444300 12692 1027 13350 55268;55269;55270 46211;46212 46211 2 5245600 2621100 1675800 STIIGESISR SSPNIAKEMHVGHLRSTIIGESISRLFEFA VGHLRSTIIGESISRLFEFAGYDVLRLNHV R S T S R L 0 1 0 0 0 0 1 1 0 3 0 0 0 0 0 3 1 0 0 0 0 0 10 0 1061.5717 P54136 P54136 214 223 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.00073752 114.19 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 15886000 0 6925200 8961200 12693 927 13351 55271;55272;55273 46213;46214 46214 2 0 2997700 1738000 STITSREIQTAVR RIAGEASRLAHYNKRSTITSREIQTAVRLL KRSTITSREIQTAVRLLLPGELAKHAVSEG R S T V R L 1 2 0 0 0 1 1 0 0 2 0 0 0 0 0 2 3 0 0 1 0 0 13 1 1460.7947 P06899;Q16778;P33778;P23527;P57053;O60814 P06899 88 100 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;H2BFS;HIST1H2BK Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type F-S;Histone H2B type 1-K no no 2;3 3.1763E-06 164.04 By MS/MS By MS/MS 7.73 0.617 4 6 1 5 6 141720000 0 58491000 83234000 12694 451;644;953 13352 55274;55275;55276;55277;55278;55279;55280;55281;55282;55283;55284 46215;46216;46217;46218;46219;46220;46221 46217 7 0 27989000 14176000 STITSREIQTAVRLLLPGELAK RIAGEASRLAHYNKRSTITSREIQTAVRLL IQTAVRLLLPGELAKHAVSEGTKAVTKYTS R S T A K H 2 2 0 0 0 1 2 1 0 2 4 1 0 0 1 2 3 0 0 1 0 0 22 2 2395.3799 P06899;Q16778;P33778;P23527;P57053;O60814 P06899 88 109 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;H2BFS;HIST1H2BK Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type F-S;Histone H2B type 1-K no no 3;4 0.017358 41.136 By MS/MS By MS/MS 7.25 0.829 1 1 2 2 2 37512000 0 3274000 34239000 12695 451;644;953 13353 55285;55286;55287;55288 46222;46223 46222 2 0 1421000 5320700 STITSREVQTAVR RIASEASRLAHYNKRSTITSREVQTAVRLL KRSTITSREVQTAVRLLLPGELAKHAVSEG R S T V R L 1 2 0 0 0 1 1 0 0 1 0 0 0 0 0 2 3 0 0 2 0 0 13 1 1446.7791 Q8N257 Q8N257 88 100 HIST3H2BB Histone H2B type 3-B yes yes 2 0.0040118 120.68 By MS/MS 8 0 1 1 4487600 0 4487600 0 12696 1601 13354 55289 46224 46224 1 0 2041700 0 STLEPVEK ITRARFEELCSDLFRSTLEPVEKALRDAKL LCSDLFRSTLEPVEKALRDAKLDKAQIHDL R S T E K A 0 0 0 0 0 0 2 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 8 0 901.47566 P0DMV9;P0DMV8;P17066;P48741 P0DMV9 312 319 HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 0.010304 93.374 By MS/MS 3 0 1 1 70293000 0 70293000 0 12697 501;582 13355 55290 46225 46225 1 0 29966000 0 STLFWGAR FKRFHPFCLVLRKRKSTLFWGARYVRTDYT LVLRKRKSTLFWGARYVRTDYTLLDVLEPG K S T A R Y 1 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 0 0 8 0 936.48175 Q96QA5 Q96QA5 45 52 GSDMA Gasdermin-A yes yes 2 0.00017132 141.98 By MS/MS 5 3.74 1 1 1 1 1 5 17411000 17411000 0 0 12698 1822 13356 55291;55292;55293;55294;55295 46226;46227;46228 46227 3 16747000 0 0 STLHNWMNEFKR HYRNIPGPHMVLVPKSTLHNWMNEFKRWVP VPKSTLHNWMNEFKRWVPSLRVICFVGDKD K S T K R W 0 1 2 0 0 0 1 0 1 0 1 1 1 1 0 1 1 1 0 0 0 0 12 1 1561.746 P28370 P28370 242 253 SMARCA1 Probable global transcription activator SNF2L1 yes yes 3 0.0016196 95.417 By MS/MS 1.5 0.5 1 1 2 11764000 0 0 11764000 12699 693 13357 55296;55297 46229 46229 1 0 0 2626000 STLHNWMSEFK HYRNIPGPHMVLVPKSTLHNWMSEFKRWVP LVPKSTLHNWMSEFKRWVPTLRSVCLIGDK K S T F K R 0 0 1 0 0 0 1 0 1 0 1 1 1 1 0 2 1 1 0 0 0 0 11 0 1378.634 O60264 O60264 239 249 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 0.039026 51.875 By MS/MS 1.5 0.5 1 1 2 15137000 0 0 15137000 12700 223 13358 55298;55299 46230 46230 1 0 0 3400500 STLHNWMSEFKR HYRNIPGPHMVLVPKSTLHNWMSEFKRWVP VPKSTLHNWMSEFKRWVPTLRSVCLIGDKE K S T K R W 0 1 1 0 0 0 1 0 1 0 1 1 1 1 0 2 1 1 0 0 0 0 12 1 1534.7351 O60264 O60264 239 250 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 0.0020106 105.86 By MS/MS 1.67 0.471 1 2 3 46497000 0 0 46497000 12701 223 13359 55300;55301;55302 46231;46232;46233 46232 3 0 0 10401000 STLINSLFLTDLYPER FEFTLMVVGESGLGKSTLINSLFLTDLYPE TLINSLFLTDLYPERVIPGAAEKIERTVQI K S T E R V 0 1 1 1 0 0 1 0 0 1 4 0 0 1 1 2 2 0 1 0 0 0 16 0 1880.9884 Q15019 Q15019 51 66 SEPT2 Septin-2 yes yes 2 0.0098074 72.958 By MS/MS 5 0 1 1 1315300 0 1315300 0 12702 1330 13360 55303 46234 46234 1 0 339040 0 STLINTLFK FEFNIMVVGQSGLGKSTLINTLFKSKISRK QSGLGKSTLINTLFKSKISRKSVQPTSEER K S T F K S 0 0 1 0 0 0 0 0 0 1 2 1 0 1 0 1 2 0 0 0 0 0 9 0 1035.5964 Q9UHD8 Q9UHD8 312 320 SEPT9 Septin-9 yes yes 2 0.050022 71.501 By MS/MS 3 0 1 1 1548600 0 1548600 0 12703 2153 13361 55304 46235 46235 1 0 660170 0 STLLGVLTHGELDNGR LEVRVAVVGNVDAGKSTLLGVLTHGELDNG TLLGVLTHGELDNGRGFARQKLFRHKHEIE K S T G R G 0 1 1 1 0 0 1 3 1 0 4 0 0 0 0 1 2 0 0 1 0 0 16 0 1680.8795 O00178 O00178 174 189 GTPBP1 GTP-binding protein 1 yes yes 3 0.054053 34.382 By MS/MS 3 0 1 1 6066100 0 0 6066100 12704 110 13362 55305 46236 46236 1 0 0 1176500 STLLLLLTGK MDSRICIVGPNGVGKSTLLLLLTGKLTPTH NGVGKSTLLLLLTGKLTPTHGEMRKNHRLK K S T G K L 0 0 0 0 0 0 0 1 0 0 5 1 0 0 0 1 2 0 0 0 0 0 10 0 1057.6747 Q8NE71 Q8NE71 665 674 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 4.3039E-05 150.36 By matching By MS/MS By MS/MS 3.44 1.95 1 3 2 1 1 1 1 2 6 48991000 793100 4486300 43712000 12705 1638 13363 55306;55307;55308;55309;55310;55311;55312;55313;55314 46237;46238;46239;46240;46241;46242 46239 6 955590 2000800 9063000 STLNEIYFGK ANIGRLVEDMENKIRSTLNEIYFGKTKDIV ENKIRSTLNEIYFGKTKDIVNGLRSIDAIP R S T G K T 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 1 1 0 1 0 0 0 10 0 1170.5921 P47756 P47756 226 235 CAPZB F-actin-capping protein subunit beta yes yes 2 0.0035882 101.64 By MS/MS By matching 6.5 0.5 2 2 2 2 103190000 0 72140000 31046000 12706 837 13364 55315;55316;55317;55318 46243;46244 46243 2 0 27056000 4775400 STLPDADRER IEEIEGLISAHDQFKSTLPDADREREAILA HDQFKSTLPDADREREAILAIHKEAQRIAE K S T E R E 1 2 0 2 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 10 1 1158.5629 O43707 O43707 575 584 ACTN4 Alpha-actinin-4 yes yes 2 0.038294 98.033 By MS/MS 2 0 1 1 16182000 0 16182000 0 12707 210 13365 55319 46245 46245 1 0 7286800 0 STLQTMESDIYTEVR QTSAKSREWDMEALRSTLQTMESDIYTEVR STLQTMESDIYTEVRELVSLKQEQQAFKEA R S T V R E 0 1 0 1 0 1 2 0 0 1 1 0 1 0 0 2 3 0 1 1 0 0 15 0 1771.8298 Q07065 Q07065 312 326 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 7.3388E-12 182.08 By matching By MS/MS By MS/MS 3 0 3 1 1 1 20232000 1281800 5064100 13886000 12708 1176 13366 55320;55321;55322 46246;46247 46246 2 1478900 2158800 2693300 STMMTQEQIQK KNLEISIDTLMAKIKSTMMTQEQIQKEYDA AKIKSTMMTQEQIQKEYDALVKSSEELLSA K S T Q K E 0 0 0 0 0 3 1 0 0 1 0 1 2 0 0 1 2 0 0 0 0 0 11 0 1323.6163 Q9UM54 Q9UM54 887 897 MYO6 Unconventional myosin-VI yes yes 2 0.00086737 115.71 By MS/MS By MS/MS 2 0 2 1 1 7921800 0 4280300 3641500 12709 2198 13367 55323;55324 46248;46249 46248 2 0 1927500 822900 STMQELNSR GAGGGDGGILTANEKSTMQELNSRLASYLD LTANEKSTMQELNSRLASYLDKVQALEEAN K S T S R L 0 1 1 0 0 1 1 0 0 0 1 0 1 0 0 2 1 0 0 0 0 0 9 0 1064.4921 P35527;CON__P35527 P35527 155 163 KRT9 Keratin, type I cytoskeletal 9 yes no 2 2.6023E-23 187 By MS/MS By MS/MS By MS/MS 5.26 2.92 4 5 2 3 4 4 3 2 4 3 15 10 9 4292300000 3761000000 94942000 436380000 + 12710 750 13368;13369 55325;55326;55327;55328;55329;55330;55331;55332;55333;55334;55335;55336;55337;55338;55339;55340;55341;55342;55343;55344;55345;55346;55347;55348;55349;55350;55351;55352;55353;55354;55355;55356;55357;55358 46250;46251;46252;46253;46254;46255;46256;46257;46258;46259;46260;46261;46262;46263;46264;46265;46266;46267;46268;46269;46270;46271;46272;46273;46274;46275;46276;46277;46278;46279;46280;46281;46282;46283;46284;46285;46286;46287;46288;46289;46290;46291;46292;46293;46294;46295;46296;46297 46265 342 48 4392400000 57315000 154890000 STMVDPAINLFFLK QYLKQVQQPSVAQLRSTMVDPAINLFFLKM RSTMVDPAINLFFLKMKGELEQTKDKLEQA R S T L K M 1 0 1 1 0 0 0 0 0 1 2 1 1 2 1 1 1 0 0 1 0 0 14 0 1594.8429 Q15007 Q15007 110 123 WTAP Pre-mRNA-splicing regulator WTAP yes yes 2 0.0033796 94.801 By matching By MS/MS 4.75 0.829 2 1 1 1 3 10465000 282820 10183000 0 12711 1328 13370 55359;55360;55361;55362 46298;46299 46298 2 220650 3282100 0 STNPGISIGDVAK SGFFLFCSEFRPKIKSTNPGISIGDVAKKL IKSTNPGISIGDVAKKLGEMWNNLNDSEKQ K S T A K K 1 0 1 1 0 0 0 2 0 2 0 1 0 0 1 2 1 0 0 1 0 0 13 0 1257.6565 O15347 O15347 113 125 HMGB3 High mobility group protein B3 yes yes 2 0.00027455 133.42 By MS/MS By MS/MS 7 0 2 1 1 220590000 0 78093000 142500000 12712 176 13371 55363;55364 46300;46301 46300 2 0 44841000 25285000 STPAAVGAMEDK DAQGPKQMNIPGGDRSTPAAVGAMEDKSAE GDRSTPAAVGAMEDKSAEHKRTQYSCYCCK R S T D K S 3 0 0 1 0 0 1 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 12 0 1175.5492 Q9UGI8 Q9UGI8 214 225 TES Testin yes yes 2 0.063095 69.672 By MS/MS 5 0 1 1 12253000 0 0 12253000 12713 2143 13372 55365 46302 46302 1 0 0 1709100 STPKEETVNDPEEAGHR LEETAGSTSIPKRKKSTPKEETVNDPEEAG PKEETVNDPEEAGHRSGSKKKRKFSKEEPV K S T H R S 1 1 1 1 0 0 4 1 1 0 0 1 0 0 2 1 2 0 0 1 0 0 17 1 1894.8657 O00567 O00567 537 553 NOP56 Nucleolar protein 56 yes yes 3;4 0.00076663 79.837 By MS/MS By MS/MS 3 0 4 2 2 31495000 0 6483700 25012000 12714 130 13373 55366;55367;55368;55369 46303;46304;46305;46306 46305 4 0 2764000 4851100 STPVTSAVQIPEVK TGNKAEDIKGTECVKSTPVTSAVQIPEVKQ KSTPVTSAVQIPEVKQDTVSEPVTPASLAA K S T V K Q 1 0 0 0 0 1 1 0 0 1 0 1 0 0 2 2 2 0 0 3 0 0 14 0 1454.7981 Q96KR1 Q96KR1 528 541 ZFR Zinc finger RNA-binding protein yes yes 2 0.0067357 85.885 By MS/MS 2 0 1 1 5279900 0 5279900 0 12715 1806 13374 55370 46307 46307 1 0 2377600 0 STPVTVVLPDTK TDILFTEQERGVGIKSTPVTVVLPDTKGKS GIKSTPVTVVLPDTKGKSYLFNIMDTPGHV K S T T K G 0 0 0 1 0 0 0 0 0 0 1 1 0 0 2 1 3 0 0 3 0 0 12 0 1255.7024 Q15029 Q15029 183 194 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.012302 90.685 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 57254000 0 24306000 32948000 12716 1335 13375 55371;55372;55373;55374 46308;46309;46310 46309 3 0 10945000 7171100 STQAATQVVLNVPETR GAAGRSLYFGENRLRSTQAATQVVLNVPET TQAATQVVLNVPETRVTCLESGLRVASEDS R S T T R V 2 1 1 0 0 2 1 0 0 0 1 0 0 0 1 1 3 0 0 3 0 0 16 0 1712.9057 O75439 O75439 44 59 PMPCB Mitochondrial-processing peptidase subunit beta yes yes 2 4.3606E-05 116.84 By MS/MS 5 0 1 1 2640300 0 2640300 0 12717 260 13376 55375 46311 46311 1 0 680600 0 STQAPLIIRPDSGNPLDTVLK EKIWGEDLRHLIVSRSTQAPLIIRPDSGNP IIRPDSGNPLDTVLKVLEILGKKFPVTENS R S T L K V 1 1 1 2 0 1 0 1 0 2 3 1 0 0 3 2 2 0 0 1 0 0 21 1 2234.227 P43490 P43490 303 323 NAMPT Nicotinamide phosphoribosyltransferase yes yes 3 0.00029947 67.866 By MS/MS 4 0 1 1 15426000 0 15426000 0 12718 816 13377 55376 46312 46312 1 0 5119300 0 STQQDIYAGSVQPILR QETLKYQFDAFYGERSTQQDIYAGSVQPIL TQQDIYAGSVQPILRHLLEGQNASVLAYGP R S T L R H 1 1 0 1 0 3 0 1 0 2 1 0 0 0 1 2 1 0 1 1 0 0 16 0 1774.9214 Q14807 Q14807 98 113 KIF22 Kinesin-like protein KIF22 yes yes 2 7.6527E-06 156.69 By MS/MS By MS/MS 3 0 2 1 1 11755000 0 3485900 8269000 12719 1320 13378 55377;55378 46313;46314 46314 2 0 1486100 1603800 STSESFIQHIVSLVHHVK FRSIFDHIKLPQASKSTSESFIQHIVSLVH ESFIQHIVSLVHHVKEQYFKSAAMTLNERF K S T V K E 0 0 0 0 0 1 1 0 3 2 1 1 0 1 0 4 1 0 0 3 0 0 18 0 2047.0851 Q9NYF8 Q9NYF8 600 617 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3;4 0.00098085 69.737 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 169770000 0 8220000 161550000 12720 2097 13379 55379;55380;55381;55382;55383;55384 46315;46316;46317;46318;46319;46320 46316 6 0 3701600 35799000 STSESTAALGCLVK STKGPSVFPLAPCSRSTSESTAALGCLVKD RSTSESTAALGCLVKDYFPEPVTVSWNSGA R S T V K D 2 0 0 0 1 0 1 1 0 0 2 1 0 0 0 3 2 0 0 1 0 0 14 0 1422.7024 P01859;P01861 P01859 17 30 IGHG2;IGHG4 Ig gamma-2 chain C region;Ig gamma-4 chain C region no no 2 0.00039045 128.17 By MS/MS 9.5 0.5 1 1 2 44085000 44085000 0 0 12721 382;384 13380 55385;55386 46321 46321 1 26275000 0 0 STSGGTAALGCLVK STKGPSVFPLAPSSKSTSGGTAALGCLVKD KSTSGGTAALGCLVKDYFPEPVTVSWNSGA K S T V K D 2 0 0 0 1 0 0 3 0 0 2 1 0 0 0 2 2 0 0 1 0 0 14 0 1320.6708 P0DOX5;P01857;P01860 P0DOX5 136 149 IGHG1;IGHG3 Ig gamma-1 chain C region;Ig gamma-3 chain C region no no 2 0.00040732 125.75 By MS/MS By matching 7.67 2.62 1 1 1 2 1 250220000 244560000 0 5667300 12722 381;383 13381 55387;55388;55389 46322;46323 46323 2 140300000 0 12395000 STSSFSCLSR GFSSGSAVVSGGSRRSTSSFSCLSRHGGGG GGSRRSTSSFSCLSRHGGGGGGFGGGGFGS R S T S R H 0 1 0 0 1 0 0 0 0 0 1 0 0 1 0 5 1 0 0 0 0 0 10 0 1130.5026 CON__P35908;CON__P35908v2;P35908 CON__P35908 36 45 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 7.5638E-07 155.07 By MS/MS By MS/MS 5.75 3.07 2 1 2 1 1 2 2 1 1 3 11 5 318860000 217060000 0 101800000 + 12723 65;66 13382 55390;55391;55392;55393;55394;55395;55396;55397;55398;55399;55400;55401;55402;55403;55404;55405 46324;46325;46326;46327;46328;46329;46330;46331;46332;46333 46330 10 244190000 0 43260000 STSSHGTDEMESSSYR RPRKTNFKGLSEDTRSTSSHGTDEMESSSY TSSHGTDEMESSSYRDRSPHRSSPSDTRPK R S T Y R D 0 1 0 1 0 0 2 1 1 0 0 0 1 0 0 6 2 0 1 0 0 0 16 0 1759.6955 Q8IWS0 Q8IWS0 181 196 PHF6 PHD finger protein 6 yes yes 3 3.1962E-13 176.98 By MS/MS 5 1.41 1 1 1 1 1 5 32969000 0 0 32969000 12724 1576 13383 55406;55407;55408;55409;55410 46334;46335 46334 2 0 0 4746200 STSVTTTSSASVTTTSNASGR KMIGFPSSAGSVSPRSTSVTTTSSASVTTT TSSASVTTTSNASGRRTSDVRRP_______ R S T G R R 2 1 1 0 0 0 0 1 0 0 0 0 0 0 0 7 7 0 0 2 0 0 21 0 2001.9451 CON__P13646-1;P13646 P13646 430 450 KRT13 Keratin, type I cytoskeletal 13 no no 2 3.5863E-36 198.78 By MS/MS 1 0 1 1 9282100 9282100 0 0 + 12725 57;548 13384 55411 46336 46336 1 9282100 0 0 STTSDIPHMLNQVESK YQEVQAMFDTLGIPKSTTSDIPHMLNQVES TTSDIPHMLNQVESKVKDILSKVQKNHVGK K S T S K V 0 0 1 1 0 1 1 0 1 1 1 1 1 0 1 3 2 0 0 1 0 0 16 0 1785.8567 Q52LJ0 Q52LJ0 162 177 FAM98B Protein FAM98B yes yes 3 0.0053431 60.918 By MS/MS By MS/MS 5 0 2 1 1 18408000 0 9863000 8545100 12726 1421 13385 55412;55413 46337;46338 46337 2 0 2542400 1191900 STTSTIESFAAQEK MKLVEQLKEERELLRSTTSTIESFAAQEKQ RSTTSTIESFAAQEKQMEVCEVCGAFLIVG R S T E K Q 2 0 0 0 0 1 2 0 0 1 0 1 0 1 0 3 3 0 0 0 0 0 14 0 1498.7151 O95232 O95232 174 187 LUC7L3 Luc7-like protein 3 yes yes 2 0.00048195 145.91 By matching By MS/MS By MS/MS 4 0 3 1 1 1 189110000 4350700 63945000 120820000 12727 312 13386 55414;55415;55416 46339;46340 46340 2 3394300 21221000 19733000 STTTGHLIYK THINIVVIGHVDSGKSTTTGHLIYKCGGID VDSGKSTTTGHLIYKCGGIDKRTIEKFEKE K S T Y K C 0 0 0 0 0 0 0 1 1 1 1 1 0 0 0 1 3 0 1 0 0 0 10 0 1119.5924 Q5VTE0;P68104;Q05639 Q5VTE0 21 30 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2 0.00014312 143.45 By MS/MS By MS/MS By MS/MS 5.33 2.71 2 1 1 3 3 3 2 3 4 8 6 232440000 17637000 81041000 133770000 12728 1076;1165 13387 55417;55418;55419;55420;55421;55422;55423;55424;55425;55426;55427;55428;55429;55430;55431;55432;55433;55434 46341;46342;46343;46344;46345;46346;46347;46348;46349;46350;46351;46352;46353;46354;46355 46347 15 19073000 56737000 56786000 STTYSLESPKDPVLPAR LYTVCDVAMNIIMSKSTTYSLESPKDPVLP TYSLESPKDPVLPARFFTQPDKNFSNTKNY K S T A R F 1 1 0 1 0 0 1 0 0 0 2 1 0 0 3 3 2 0 1 1 0 0 17 1 1859.9629 Q9NTI5 Q9NTI5 1080 1096 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 2.0874E-18 186.76 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 96969000 0 9914100 87055000 12729 2053 13388 55435;55436;55437;55438;55439;55440 46356;46357;46358;46359;46360 46357 5 0 4464400 18993000 STVAESVSQQILR RDHLRVNLKFLTRTRSTVAESVSQQILRQN TRSTVAESVSQQILRQNRGRKACDRPVAKT R S T L R Q 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 3 1 0 0 2 0 0 13 0 1416.7573 Q86WX3 Q86WX3 84 96 RPS19BP1 Active regulator of SIRT1 yes yes 2 4.0224E-05 159.34 By MS/MS By MS/MS 8.4 1.36 2 1 2 2 3 25314000 0 5296200 20018000 12730 1557 13389 55441;55442;55443;55444;55445 46361;46362;46363;46364 46363 4 0 11439000 6434000 STVENFGQLGR QQVLLAAKQVLLYLRSTVENFGQLGRSVGP LYLRSTVENFGQLGRSVGPPLLQLFLDLLR R S T G R S 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 1 1 0 0 1 0 0 11 0 1206.5993 O60287 O60287 937 947 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0011072 113.26 By MS/MS By MS/MS 1 0 2 1 1 13349000 0 4739000 8610500 12731 224 13390 55446;55447 46365;46366 46366 2 0 2316300 1855300 STVHEILCK ______________________________ ______________________________ M S T C K L 0 0 0 0 1 0 1 0 1 1 1 1 0 0 0 1 1 0 0 1 0 0 9 0 1085.5539 P07355;A6NMY6 P07355 2 10 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 0.00030832 128.61 By MS/MS 6 0 1 1 22021000 0 0 22021000 12732 459 13391 55448 46367 46367 1 0 0 3294500 STVLTNGEAAMQSSNSESK QEAVGNIKVTKSPQKSTVLTNGEAAMQSSN TNGEAAMQSSNSESKKKKKKKRKMVNDAEP K S T S K K 2 0 2 0 0 1 2 1 0 0 1 1 1 0 0 5 2 0 0 1 0 0 19 0 1939.8793 Q9NVP1 Q9NVP1 90 108 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 1.479E-12 169.04 By MS/MS By MS/MS 3 0 2 1 1 7926000 0 2887800 5038100 12733 2069 13392 55449;55450 46368;46369 46369 2 0 1231100 977160 STVLTPMFVETQASQGTLQTR CEFQEYTIDSDWRFRSTVLTPMFVETQASQ MFVETQASQGTLQTRTQEGSLSARWPVAGQ R S T T R T 1 1 0 0 0 3 1 1 0 0 2 0 1 1 1 2 5 0 0 2 0 0 21 0 2294.1576 P78527 P78527 2599 2619 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 3 2.4021E-14 124.35 By MS/MS 1 0 1 1 6705300 0 0 6705300 12734 1089 13393 55451 46370 46370 1 0 0 1444800 STVTLSWKPVQK NVLIKDLFHIPPSYKSTVTLSWKPVQKVEI SYKSTVTLSWKPVQKVEIGQKRASEDTTSG K S T Q K V 0 0 0 0 0 1 0 0 0 0 1 2 0 0 1 2 2 1 0 2 0 0 12 1 1372.7715 Q9BZZ5 Q9BZZ5 437 448 API5 Apoptosis inhibitor 5 yes yes 2 5.6924E-17 190.03 By MS/MS 4 0 1 1 11343000 0 11343000 0 12735 1947 13394 55452 46371 46371 1 0 3764300 0 STVVKAISGVHTVR ATINIGTIGHVAHGKSTVVKAISGVHTVRF KSTVVKAISGVHTVRFKNELERNITIKLGY K S T V R F 1 1 0 0 0 0 0 1 1 1 0 1 0 0 0 2 2 0 0 4 0 0 14 1 1452.8413 P41091;Q2VIR3 P41091 55 68 EIF2S3;EIF2S3L Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein yes no 3 0.024624 55.213 By MS/MS 4 0 1 1 2378400 0 2378400 0 12736 790 13395 55453 46372 46372 1 0 789320 0 STYEQVDLIGKK TCPHWVFNVAKKYMKSTYEQVDLIGKKTQK YMKSTYEQVDLIGKKTQKTAITVEHLAIKC K S T K K T 0 0 0 1 0 1 1 1 0 1 1 2 0 0 0 1 1 0 1 1 0 0 12 1 1379.7296 Q9NR30 Q9NR30 392 403 DDX21 Nucleolar RNA helicase 2 yes yes 2;3 0.007184 83.309 By matching By MS/MS By MS/MS 2.33 0.471 4 2 3 2 1 41207000 19168000 9645600 12393000 12737 2038 13396 55454;55455;55456;55457;55458;55459 46373;46374;46375 46374 2 22784000 4343600 2403600 STYNYSLPITVK KHGYAPSDLPVKAKRSTYNYSLPITVKKTS AKRSTYNYSLPITVKKTSSQLVTMHDLKQG R S T V K K 0 0 1 0 0 0 0 0 0 1 1 1 0 0 1 2 2 0 2 1 0 0 12 0 1384.7238 Q9Y5Q8 Q9Y5Q8 343 354 GTF3C5 General transcription factor 3C polypeptide 5 yes yes 2 0.038175 68.536 By MS/MS 4 0 1 1 0 0 0 0 12738 2300 13397 55460 46376 46376 1 0 0 0 SVAFPPFPSGR TIKNCLSAAEDKKLKSVAFPPFPSGRNCFP KKLKSVAFPPFPSGRNCFPKQTAAQVTLKA K S V G R N 1 1 0 0 0 0 0 1 0 0 0 0 0 2 3 2 0 0 0 1 0 0 11 0 1160.5978 Q9P0M6 Q9P0M6 308 318 H2AFY2 Core histone macro-H2A.2 yes yes 2 0.00047404 119.75 By MS/MS By MS/MS 4.4 0.8 1 1 3 3 2 85886000 0 29991000 55894000 12739 2117 13398 55461;55462;55463;55464;55465 46377;46378;46379;46380;46381 46380 5 0 8082300 7796300 SVAGGFVYTYK YVLVGVAKDLILNPRSVAGGFVYTYKLVNN LNPRSVAGGFVYTYKLVNNGEKLEFLHKTP R S V Y K L 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 1 1 0 2 2 0 0 11 0 1190.5972 Q15393 Q15393 919 929 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.0098069 91.584 By MS/MS By matching 2.5 1.12 1 1 1 1 3 1 25809000 0 23391000 2417500 12740 1361 13399 55466;55467;55468;55469 46382 46382 1 0 10646000 394850 SVASDVPEELDFLVPK PERKRKKTEDSSSGKSVASDVPEELDFLVP VASDVPEELDFLVPKAGFFCPICSLFYSGE K S V P K A 1 0 0 2 0 0 2 0 0 0 2 1 0 1 2 2 0 0 0 3 0 0 16 0 1743.8931 Q14966 Q14966 1910 1925 ZNF638 Zinc finger protein 638 yes yes 2 0.025657 62.466 By MS/MS 1 0 1 1 3559800 0 0 3559800 12741 1324 13400 55470 46383 46383 1 0 0 767010 SVAWNPSPAVCLVAAAVEDSVLLLNPALGDR TARCVRTVPVGGVVKSVAWNPSPAVCLVAA VEDSVLLLNPALGDRLVAGSTDQLLSAFVP K S V D R L 6 1 2 2 1 0 1 1 0 0 5 0 0 0 3 3 0 1 0 5 0 0 31 0 3203.6649 Q14137 Q14137 459 489 BOP1 Ribosome biogenesis protein BOP1 yes yes 3 0.0023947 34.821 By MS/MS 2 0 1 1 593570 0 0 593570 12742 1283 13401 55471 46384 46384 1 0 0 134130 SVDETLR GILRQITVNDLPVGRSVDETLRLVQAFQFT VNDLPVGRSVDETLRLVQAFQFTDKHGEVC R S V L R L 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 7 0 818.4134 Q06830;Q13162 Q06830 152 158 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 no no 2 0.01548 110.63 By MS/MS By matching By MS/MS 7 0 3 1 1 1 24910000 5853900 3148600 15908000 12743 1173;1227 13402 55472;55473;55474 46385;46386 46385 2 12616000 1807900 2822800 SVDETTQAMAFDGIIFQGQSLK VQINQDKNFAFLEFRSVDETTQAMAFDGII AMAFDGIIFQGQSLKIRRPHDYQPLPGMSE R S V L K I 2 0 0 2 0 3 1 2 0 2 1 1 1 2 0 2 2 0 0 1 0 0 22 0 2385.1522 P26368 P26368 204 225 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 2;3 1.8852E-148 272.72 By MS/MS By MS/MS 3.6 1.36 1 1 2 4 1 1 2 8 103180000 0 19613000 83571000 12744 668 13403 55475;55476;55477;55478;55479;55480;55481;55482;55483;55484 46387;46388;46389;46390;46391;46392 46391 6 0 6508800 14400000 SVDPTLALSVYLR EDKLECSEELGDLVKSVDPTLALSVYLRAN VKSVDPTLALSVYLRANVPNKVIQCFAETG K S V L R A 1 1 0 1 0 0 0 0 0 0 3 0 0 0 1 2 1 0 1 2 0 0 13 0 1432.7926 Q00610 Q00610 469 481 CLTC Clathrin heavy chain 1 yes yes 2 0.00070214 118.4 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 42621000 0 5038400 37582000 12745 1125 13404 55485;55486;55487;55488;55489 46393;46394;46395;46396;46397 46395 5 0 2337300 8123100 SVEDRFDQQK TRLTYEIEDEKRRRKSVEDRFDQQKNDYDQ KRRRKSVEDRFDQQKNDYDQLQKARQCEKE K S V Q K N 0 1 0 2 0 2 1 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 10 1 1250.5891 P15924 P15924 1127 1136 DSP Desmoplakin yes yes 2 0.0040358 128.52 By MS/MS 1 0 1 1 5811700 0 5811700 0 12746 572 13405 55490 46398 46398 1 0 2840700 0 SVEEEEQVWR SILAETEGMLRDLQKSVEEEEQVWRAKVGA RDLQKSVEEEEQVWRAKVGAAEEELQKSRV K S V W R A 0 1 0 0 0 1 4 0 0 0 0 0 0 0 0 1 0 1 0 2 0 0 10 0 1289.5888 Q9P2E9 Q9P2E9 1148 1157 RRBP1 Ribosome-binding protein 1 yes yes 2 1.0181E-05 152.63 By MS/MS 1.5 0.5 1 1 2 11406000 0 0 11406000 12747 2122 13406 55491;55492 46399;46400 46400 2 0 0 2510400 SVEELLEAELLK EELKKVIHEKDGKIKSVEELLEAELLKVAN KIKSVEELLEAELLKVANKEKTVQDLKQEI K S V L K V 1 0 0 0 0 0 4 0 0 0 4 1 0 0 0 1 0 0 0 1 0 0 12 0 1371.7497 Q86UP2 Q86UP2 812 823 KTN1 Kinectin yes yes 2 0.0015196 112.36 By MS/MS 1 0 1 1 5516500 0 0 5516500 12748 1549 13407 55493 46401 46401 1 0 0 1188600 SVEETLR GVIKHLSVNDLPVGRSVEETLRLVKAFQYV VNDLPVGRSVEETLRLVKAFQYVETHGEVC R S V L R L 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 1 0 0 1 0 0 7 0 832.42905 P30048 P30048 208 214 PRDX3 Thioredoxin-dependent peroxide reductase, mitochondrial yes yes 2 0.011689 117.7 By MS/MS 7 0 1 1 12218000 0 0 12218000 12749 707 13408 55494 46402 46402 1 0 0 2167900 SVEEVASEIQPFLR LIDKTTLDKLLKGKKSVEEVASEIQPFLRG KSVEEVASEIQPFLRGAGSIAGASASPKEK K S V L R G 1 1 0 0 0 1 3 0 0 1 1 0 0 1 1 2 0 0 0 2 0 0 14 0 1602.8253 P15924 P15924 2000 2013 DSP Desmoplakin yes yes 2;3 2.4794E-72 239.39 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 44612000 0 18225000 26387000 12750 572 13409 55495;55496;55497;55498;55499 46403;46404;46405;46406;46407 46403 5 0 8833700 5685500 SVELEEALPVTTAEGMAK ______________________________ LEEALPVTTAEGMAKKVTKAGGSAALSPSK M S V A K K 3 0 0 0 0 0 4 1 0 0 2 1 1 0 1 1 2 0 0 2 0 0 18 0 1873.9343 Q92522 Q92522 2 19 H1FX Histone H1x yes yes 2 1.0162E-12 171.29 By MS/MS By MS/MS 6.6 0.663 5 4 1 3 7 164120000 0 16197000 147930000 12751 1706 13410;13411;13412 55500;55501;55502;55503;55504;55505;55506;55507;55508;55509 46408;46409;46410;46411;46412;46413;46414;46415;46416;46417 46411 658 10 0 5688200 22627000 SVFALTNGIYPHK LPKIKAIPQLQGYLRSVFALTNGIYPHKLV LRSVFALTNGIYPHKLVF____________ R S V H K L 1 0 1 0 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 1 0 0 13 0 1445.7667 Q02878 Q02878 273 285 RPL6 60S ribosomal protein L6 yes yes 2;3 0.00012197 152.04 By MS/MS By MS/MS 5.25 1.53 1 1 4 4 2 7 5 366970000 0 163800000 203170000 12752 1149 13413 55510;55511;55512;55513;55514;55515;55516;55517;55518;55519;55520;55521 46418;46419;46420;46421;46422;46423;46424;46425;46426;46427;46428;46429 46427 11 0 55406000 29915000 SVFDEELTNTSK EPVRGPAKKQKQGKKSVFDEELTNTSKKAL GKKSVFDEELTNTSKKALKQYRAGPSFEER K S V S K K 0 0 1 1 0 0 2 0 0 0 1 1 0 1 0 2 2 0 0 1 0 0 12 0 1368.6409 Q96GQ7 Q96GQ7 746 757 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.00018302 133.23 By MS/MS By MS/MS 2 0 2 1 1 28229000 0 13408000 14821000 12753 1793 13414 55522;55523 46430;46431 46430 2 0 6037700 3349200 SVFEEEVR ENRCQSLQEELDFRKSVFEEEVRETRRRHE EELDFRKSVFEEEVRETRRRHERRLVEVDS K S V V R E 0 1 0 0 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 8 0 993.47673 Q03252 Q03252 224 231 LMNB2 Lamin-B2 yes yes 2 0.0013398 117.17 By matching By MS/MS By MS/MS 3 0 3 1 1 1 76775000 4357600 8374300 64043000 12754 1156 13415 55524;55525;55526 46432;46433 46433 2 5027700 3570000 12421000 SVFGKLFGAGGGK ______________________________ ______________________________ M S V G K A 1 0 0 0 0 0 0 5 0 0 1 2 0 2 0 1 0 0 0 1 0 0 13 1 1223.6663 Q9H444 Q9H444 2 14 CHMP4B Charged multivesicular body protein 4b yes yes 2 0.0058216 83 By MS/MS By matching 6 0 2 1 1 3704400 0 2323700 1380700 12755 1981 13416 55527;55528 46434 46434 1 0 804380 206570 SVGDGETVEFDVVEGEK HQTAIKKNNPRKYLRSVGDGETVEFDVVEG GDGETVEFDVVEGEKGAEAANVTGPGGVPV R S V E K G 0 0 0 2 0 0 4 3 0 0 0 1 0 1 0 1 1 0 0 4 0 0 17 0 1794.816 P16989;Q9Y2T7;P67809 P67809 102 118 YBX3;YBX2;YBX1 Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1 no no 2 6.1723E-13 161.48 By MS/MS By MS/MS 5.12 1.17 1 1 3 2 1 3 5 110010000 0 30185000 79830000 12756 1072;581 13417 55529;55530;55531;55532;55533;55534;55535;55536 46435;46436;46437;46438;46439;46440;46441 46436 7 0 8152300 12153000 SVGDVALSQIVR MLVTTPEKWDVVTRKSVGDVALSQIVRLLI TRKSVGDVALSQIVRLLILDEVHLLHEDRG K S V V R L 1 1 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 0 3 0 0 12 0 1242.6932 Q8N3C0 Q8N3C0 595 606 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00154 112.13 By MS/MS 1 0 1 1 18478000 0 18478000 0 12757 1602 13418 55537 46442 46442 1 0 9031600 0 SVGELPSTVESLQK ETQLVLYGDVEELKRSVGELPSTVESLQKV RSVGELPSTVESLQKVQEQVHTLLSQDQAQ R S V Q K V 0 0 0 0 0 1 2 1 0 0 2 1 0 0 1 3 1 0 0 2 0 0 14 0 1472.7722 Q07065 Q07065 492 505 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 2.1777E-05 162.26 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 61897000 0 28615000 33283000 12758 1176 13419 55538;55539;55540 46443;46444 46443 2 0 11537000 6455200 SVGEVMGIGR SKFLRVSTKIGSCMKSVGEVMGIGRSFEEA GSCMKSVGEVMGIGRSFEEAFQKALRMVDE K S V G R S 0 1 0 0 0 0 1 3 0 1 0 0 1 0 0 1 0 0 0 2 0 0 10 0 1003.5121 P27708 P27708 761 770 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 6.8746E-07 155.88 By MS/MS 1 0 1 1 13355000 0 13355000 0 12759 681 13420 55541 46445 46445 1 0 6527500 0 SVGFIGAGQLAFALAK ______________________________ VGFIGAGQLAFALAKGFTAAGVLAAHKIMA M S V A K G 4 0 0 0 0 1 0 3 0 1 2 1 0 2 0 1 0 0 0 1 0 0 16 0 1548.8664 P32322 P32322 2 17 PYCR1 Pyrroline-5-carboxylate reductase 1, mitochondrial yes yes 2 0.0044653 73.781 By MS/MS 6 0 1 1 449750 0 449750 0 12760 728 13421 55542 46446 46446 1 0 155690 0 SVGFIGAGQLAYALAR ______________________________ VGFIGAGQLAYALARGFTAAGILSAHKIIA M S V A R G 4 1 0 0 0 1 0 3 0 1 2 0 0 1 0 1 0 0 1 1 0 0 16 0 1592.8675 Q96C36 Q96C36 2 17 PYCR2 Pyrroline-5-carboxylate reductase 2 yes yes 2 1.4533E-09 173.71 By MS/MS By matching 6 0 2 1 1 11542000 0 11166000 376390 12761 1758 13422 55543;55544 46447;46448 46447 2 0 3865300 56313 SVGGSGGGSFGDNLVTR SGSSASSVTVTRSYRSVGGSGGGSFGDNLV GGSGGGSFGDNLVTRSYLLGNSSPRTQSPQ R S V T R S 0 1 1 1 0 0 0 6 0 0 1 0 0 1 0 3 1 0 0 2 0 0 17 0 1565.7434 P02545 P02545 628 644 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 2.9589E-14 184.34 By MS/MS By MS/MS By MS/MS 5.82 3.1 2 3 2 1 1 2 1 5 5 213100000 5830400 84797000 122470000 12762 387 13423 55545;55546;55547;55548;55549;55550;55551;55552;55553;55554;55555 46449;46450;46451;46452;46453;46454;46455;46456;46457;46458;46459;46460 46457 12 6726900 51947000 28919000 SVGMIAGGTGITPMLQVIR IRPDKKSNPIIRTVKSVGMIAGGTGITPML IAGGTGITPMLQVIRAIMKDPDDHTVCHLL K S V I R A 1 1 0 0 0 1 0 4 0 3 1 0 2 0 1 1 2 0 0 2 0 0 19 0 1900.0274 P00387 P00387 174 192 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form yes yes 2 7.9028E-06 105.17 By matching By MS/MS 6.33 0.471 2 1 1 2 11959000 319380 0 11639000 12763 358 13424 55556;55557;55558 46461 46461 1 425260 0 1813500 SVGNTIDPVILFQK QYLNKLSMKPEPLFRSVGNTIDPVILFQKM RSVGNTIDPVILFQKMGVGKLEMYVLNPVK R S V Q K M 0 0 1 1 0 1 0 1 0 2 1 1 0 1 1 1 1 0 0 2 0 0 14 0 1529.8453 P46821 P46821 401 414 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.00047888 120.36 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 34254000 710610 9259600 24284000 12764 834 13425 55559;55560;55561;55562;55563 46462;46463;46464 46462 3 710610 4375800 5279400 SVIEQGGIQTVDQLIK VSGDTVPQSILTKSRSVIEQGGIQTVDQLI VIEQGGIQTVDQLIKELPELLQRNREILDE R S V I K E 0 0 0 1 0 3 1 2 0 3 1 1 0 0 0 1 1 0 0 2 0 0 16 0 1726.9465 Q8WUM4 Q8WUM4 423 438 PDCD6IP Programmed cell death 6-interacting protein yes yes 2 9.3375E-06 155.08 By MS/MS By MS/MS 2 0 2 1 1 10238000 0 4043300 6195100 12765 1676 13426 55564;55565 46465;46466 46465 2 0 1820700 1400000 SVIPSDGPSVACVK EHEATKCQSFRDHMKSVIPSDGPSVACVKK KSVIPSDGPSVACVKKASYLDCIRAIAANE K S V V K K 1 0 0 1 1 0 0 1 0 1 0 1 0 0 2 3 0 0 0 3 0 0 14 0 1414.7126 P02787 P02787 47 60 TF Serotransferrin yes yes 2 0.017472 75.695 By MS/MS 9 0 1 1 35999000 35999000 0 0 12766 399 13427 55566 46467 46467 1 20207000 0 0 SVIYHALSQK ______________________________ ______________________________ K S V Q K E 1 0 0 0 0 1 0 0 1 1 1 1 0 0 0 2 0 0 1 1 0 0 10 0 1144.6241 O95707 O95707 3 12 POP4 Ribonuclease P protein subunit p29 yes yes 2 0.0071951 93.178 By MS/MS By MS/MS 7 0 2 1 1 7996400 0 3419400 4577000 12767 335 13428 55567;55568 46468;46469 46469 2 0 1963500 812160 SVKEDSNLTLQEK AIRDAKTPDKMKKSKSVKEDSNLTLQEKKE SKSVKEDSNLTLQEKKEKIQTGLKKLTELG K S V E K K 0 0 1 1 0 1 2 0 0 0 2 2 0 0 0 2 1 0 0 1 0 0 13 1 1489.7624 P46940 P46940 1443 1455 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 1.73E-10 179.19 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 13275000 0 8672200 4602300 12768 835 13429 55569;55570;55571 46470;46471;46472 46471 3 0 3956600 1040000 SVKPQILSVFGDIALAIGGEFKK MQLLLENLGNENVHRSVKPQILSVFGDIAL VFGDIALAIGGEFKKYLEVVLNTLQQASQA R S V K K Y 2 0 0 1 0 1 1 3 0 3 2 3 0 2 1 2 0 0 0 2 0 0 23 2 2416.373 Q14974 Q14974 708 730 KPNB1 Importin subunit beta-1 yes yes 4 0.0063744 44.258 By MS/MS 2.5 0.5 1 1 2 3762200 0 0 3762200 12769 1325 13430 55572;55573 46473;46474 46474 2 0 0 765110 SVLAETEGILQK DEMHTLLQLECEKYKSVLAETEGILQKLQR KYKSVLAETEGILQKLQRSVEQEENKWKVK K S V Q K L 1 0 0 0 0 1 2 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1286.7082 Q86UP2 Q86UP2 1141 1152 KTN1 Kinectin yes yes 2 0.00059428 123.88 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 20007000 0 3060700 16947000 12770 1549 13431 55574;55575;55576;55577 46475;46476;46477 46476 3 0 1378300 3710300 SVLELIPELNEKEEAYNSLMK LLRNSRKQGKASTVKSVLELIPELNEKEEA PELNEKEEAYNSLMKSYVSEKDVTSAKALY K S V M K S 1 0 2 0 0 0 5 0 0 1 4 2 1 0 1 2 0 0 1 1 0 0 21 1 2448.2458 P42704 P42704 1306 1326 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 3 2.7971E-14 126.22 By MS/MS 2 0 1 1 6531000 0 0 6531000 12771 808 13432 55578 46478 46478 1 0 0 1475900 SVLGDVGITEVFSDR LHLPKLSISETYDLKSVLGDVGITEVFSDR SVLGDVGITEVFSDRADLSGITKEQPLKVS K S V D R A 0 1 0 2 0 0 1 2 0 1 1 0 0 1 0 2 1 0 0 3 0 0 15 0 1592.8046 CON__P34955 CON__P34955 323 337 yes yes 2 2.9225E-89 249.83 By MS/MS By MS/MS By MS/MS 4.75 2.11 2 3 2 1 3 2 3 134820000 78652000 13946000 42225000 + 12772 64 13433 55579;55580;55581;55582;55583;55584;55585;55586 46479;46480;46481;46482;46483;46484;46485;46486 46485 8 63049000 11904000 7063600 SVLGGQDQLR RTEQLQAVLCSTMEKSVLGGQDQLRVRVTE STMEKSVLGGQDQLRVRVTELEDEVRNLRK K S V L R V 0 1 0 1 0 2 0 2 0 0 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1071.5673 Q9BV38 Q9BV38 390 399 WDR18 WD repeat-containing protein 18 yes yes 2 0.035114 76.679 By MS/MS 5 0 1 1 38191000 0 0 38191000 12773 1910 13434 55587 46487 46487 1 0 0 5327000 SVLGQLGITK LHLPKLSITGTYDLKSVLGQLGITKVFSNG TYDLKSVLGQLGITKVFSNGADLSGVTEEA K S V T K V 0 0 0 0 0 1 0 2 0 1 2 1 0 0 0 1 1 0 0 1 0 0 10 0 1014.6073 P01009 P01009 325 334 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 0.0083113 90.761 By MS/MS By matching 5.4 2.84 1 1 1 1 1 2 1 1 1 9 1 240920000 240370000 0 551490 12774 367 13435 55588;55589;55590;55591;55592;55593;55594;55595;55596;55597 46488;46489;46490;46491 46490 4 165650000 0 82508 SVLLLAYKPMEGNFEEIAR LKTKGDFILVGDLMRSVLLLAYKPMEGNFE LAYKPMEGNFEEIARDFNPNWMSAVEILDD R S V A R D 2 1 1 0 0 0 3 1 0 1 3 1 1 1 1 1 0 0 1 1 0 0 19 1 2179.1347 Q16531 Q16531 929 947 DDB1 DNA damage-binding protein 1 yes yes 2;3 1.028E-113 260.19 By matching By MS/MS By MS/MS 1.8 0.4 1 4 1 1 3 52465000 1039800 1927300 49498000 12775 1387 13436 55598;55599;55600;55601;55602 46492;46493;46494;46495 46495 4 1252800 867900 11073000 SVLNSITEEVLDHMGTFR IHVVINGFFPGISVKSVLNSITEEVLDHMG NSITEEVLDHMGTFRSILDQLDWIVNKFKE K S V F R S 0 1 1 1 0 0 2 1 1 1 2 0 1 1 0 2 2 0 0 2 0 0 18 0 2047.0044 Q13416 Q13416 350 367 ORC2 Origin recognition complex subunit 2 yes yes 3 5.6094E-09 115.87 By MS/MS 3.5 0.5 1 1 2 20080000 0 0 20080000 12776 1244 13437 55603;55604 46496 46496 1 0 0 3831100 SVLQAQSASPIFTHVYAALVAIINSK LLQENIVRGRGLLSRSVLQAQSASPIFTHV FTHVYAALVAIINSKFPQIGELILKRLILN R S V S K F 5 0 1 0 0 2 0 0 1 3 2 1 0 1 1 4 1 0 1 3 0 0 26 0 2727.496 Q9HCG8 Q9HCG8 200 225 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 3 0.00021982 53.705 By MS/MS 2 0 1 1 3964200 0 0 3964200 12777 2012 13438 55605 46497 46497 1 0 0 895820 SVMEELKR YKNDVMIRKEAYVHKSVMEELKRIIDDSEI KEAYVHKSVMEELKRIIDDSEITKEDDALW K S V K R I 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 8 1 990.51682 P61326;Q96A72 Q96A72 57 64 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2 0.054159 77.674 By matching By MS/MS 8.4 1.02 1 2 1 1 2 3 50447000 0 15640000 34807000 12778 992;1748 13439 55606;55607;55608;55609;55610 46498 46498 1 0 7306000 8845200 SVNDQPSGNLPFLKPDDIQYFDK GMTGFHMQTEDRTMKSVNDQPSGNLPFLKP NLPFLKPDDIQYFDKLLVDVDESTLSPEEQ K S V D K L 0 0 2 4 0 2 0 1 0 1 2 2 0 2 3 2 0 0 1 1 0 0 23 1 2636.2758 O75533 O75533 455 477 SF3B1 Splicing factor 3B subunit 1 yes yes 3 9.4306E-08 87.802 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 33312000 0 9075600 24237000 12779 270 13440 55611;55612;55613;55614 46499;46500;46501;46502 46501 4 0 4184800 5376600 SVNELIYK RIVEPYIAWGYPNLKSVNELIYKRGYGKIN WGYPNLKSVNELIYKRGYGKINKKRIALTD K S V Y K R 0 0 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 8 0 964.52295 P18124 P18124 149 156 RPL7 60S ribosomal protein L7 yes yes 2 0.012194 91.069 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 3 2 209490000 0 41257000 168230000 12780 594 13441 55615;55616;55617;55618;55619 46503;46504 46503 2 0 14062000 25381000 SVNELIYKR RIVEPYIAWGYPNLKSVNELIYKRGYGKIN GYPNLKSVNELIYKRGYGKINKKRIALTDN K S V K R G 0 1 1 0 0 0 1 0 0 1 1 1 0 0 0 1 0 0 1 1 0 0 9 1 1120.6241 P18124 P18124 149 157 RPL7 60S ribosomal protein L7 yes yes 2 2.9873E-17 184.49 By MS/MS By MS/MS 5.67 0.471 1 2 2 1 55069000 0 42814000 12255000 12781 594 13442 55620;55621;55622 46505;46506 46505 2 0 14671000 1833500 SVNESLNNLFITEEDYQALR LVKPYLRSVQNHNNKSVNESLNNLFITEED LNNLFITEEDYQALRTSIDAYDNFDNISLA K S V L R T 1 1 3 1 0 1 3 0 0 1 3 0 0 1 0 2 1 0 1 1 0 0 20 0 2354.139 Q00610 Q00610 1462 1481 CLTC Clathrin heavy chain 1 yes yes 2;3 2.3801E-120 260.97 By MS/MS By MS/MS 1.43 0.495 4 3 3 4 63073000 0 4429200 58644000 12782 1125 13443 55623;55624;55625;55626;55627;55628;55629 46507;46508;46509;46510;46511;46512 46512 6 0 2100600 12826000 SVNFSLTPNEIK PSPPSPLEKTPLGERSVNFSLTPNEIKVSA GERSVNFSLTPNEIKVSAEAEVAPVSPEVT R S V I K V 0 0 2 0 0 0 1 0 0 1 1 1 0 1 1 2 1 0 0 1 0 0 12 0 1347.7034 P46821 P46821 1276 1287 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.0010576 117.52 By MS/MS By MS/MS 1 0 2 1 1 23062000 0 6164200 16898000 12783 834 13444 55630;55631 46513;46514 46513 2 0 3013000 3640900 SVNGKEDAIWNLLR DCHLARVPSHAVVARSVNGKEDAIWNLLRQ RSVNGKEDAIWNLLRQAQEKFGKDKSPKFQ R S V L R Q 1 1 2 1 0 0 1 1 0 1 2 1 0 0 0 1 0 1 0 1 0 0 14 1 1613.8526 P02788 P02788 278 291 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 3 1.0404E-07 164.81 By MS/MS 6.6 2.73 1 1 1 1 1 5 24500000 24500000 0 0 12784 400 13445 55632;55633;55634;55635;55636 46515;46516;46517;46518 46516 4 19205000 0 0 SVNLLVVK DSRIEDLEEGQQVIRSVNLLVVKVLEKSDQ EGQQVIRSVNLLVVKVLEKSDQTNILSALL R S V V K V 0 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 0 3 0 0 8 0 870.55385 Q14008 Q14008 1667 1674 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.053315 72.138 By matching By MS/MS 1.33 0.471 2 1 1 2 29261000 1151100 0 28110000 12785 1279 13446 55637;55638;55639 46519 46519 1 1151100 0 6088100 SVPGTTSSPLVGDISPK NPMYIHTSVSQDFSRSVPGTTSSPLVGDIS PGTTSSPLVGDISPKSSPHEVKFQMQRKSE R S V P K S 0 0 0 1 0 0 0 2 0 1 1 1 0 0 3 4 2 0 0 2 0 0 17 0 1640.8621 Q9UQR0 Q9UQR0 576 592 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.0026051 89.013 By matching By MS/MS By MS/MS 3 0 3 1 1 1 13862000 1562800 4253300 8046000 12786 2224 13447 55640;55641;55642 46520;46521 46521 1 1803100 1813200 1560600 SVPPSASHVAPTETFTYEWTVPK NEGTYYSPNYNPQSRSVPPSASHVAPTETF VAPTETFTYEWTVPKEVGPTNADPVCLAKM R S V P K E 2 0 0 0 0 0 2 0 1 0 0 1 0 1 4 3 4 1 1 3 0 0 23 0 2530.238 P00450 P00450 501 523 CP Ceruloplasmin yes yes 3 0.04506 26.849 By MS/MS 9 0 1 1 3778200 3778200 0 0 12787 360 13448 55643 46522 46522 1 2120700 0 0 SVPSALMK ______________________________ ______________________________ M S V M K Q 1 0 0 0 0 0 0 0 0 0 1 1 1 0 1 2 0 0 0 1 0 0 8 0 831.45242 P55081 P55081 2 9 MFAP1 Microfibrillar-associated protein 1 yes yes 1 0.015374 56.721 By MS/MS 4 0 1 1 2151900 0 2151900 0 12788 937 13449 55644 46523 46523 0 0 714130 0 SVPVTVDDDDDDNDPENR HTGFCQSSGDEALSKSVPVTVDDDDDDNDP VTVDDDDDDNDPENRIAKKMLLEEIKANLS K S V N R I 0 1 2 7 0 0 1 0 0 0 0 0 0 0 2 1 1 0 0 3 0 0 18 0 2015.8192 P46100 P46100 1253 1270 ATRX Transcriptional regulator ATRX yes yes 2 1.6613E-08 147.18 By MS/MS 1 0 1 1 5237600 0 0 5237600 12789 825 13450 55645 46524 46524 1 0 0 1128500 SVQEFLTDMK DFQTVQNKCSCGSYRSVQEFLTDMKQVFTN CGSYRSVQEFLTDMKQVFTNAEVYNCRGSH R S V M K Q 0 0 0 1 0 1 1 0 0 0 1 1 1 1 0 1 1 0 0 1 0 0 10 0 1196.5747 Q9UIG0 Q9UIG0 1400 1409 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0087157 89.886 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 35577000 0 2994500 32583000 12790 2164 13451 55646;55647;55648;55649 46525;46526 46526 2 0 1348500 7047100 SVQEGENPDDGVR ______________________________ KRSVQEGENPDDGVRGSPPEDYRLGQVASS R S V V R G 0 1 1 2 0 1 2 2 0 0 0 0 0 0 1 1 0 0 0 2 0 0 13 0 1400.6168 P42696 P42696 14 26 RBM34 RNA-binding protein 34 yes yes 2 0.0023263 107.83 By MS/MS 4 0 1 1 1170900 0 0 1170900 12791 807 13452 55650 46527 46527 1 0 0 191250 SVQETVLPIK AAEAKKKAVKESSIRSVQETVLPIKKRKTR ESSIRSVQETVLPIKKRKTRETVSIEVKEV R S V I K K 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 1 1 0 0 2 0 0 10 0 1112.6441 P51608 P51608 295 304 MECP2 Methyl-CpG-binding protein 2 yes yes 2 0.034544 76.827 By MS/MS 4.5 1.12 1 1 1 1 4 13338000 0 0 13338000 12792 896 13453 55651;55652;55653;55654 46528 46528 1 0 0 2348700 SVQETVLPIKK AAEAKKKAVKESSIRSVQETVLPIKKRKTR SSIRSVQETVLPIKKRKTRETVSIEVKEVV R S V K K R 0 0 0 0 0 1 1 0 0 1 1 2 0 0 1 1 1 0 0 2 0 0 11 1 1240.7391 P51608 P51608 295 305 MECP2 Methyl-CpG-binding protein 2 yes yes 2 0.039555 82.749 By MS/MS 3 0 1 1 1842100 0 1842100 0 12793 896 13454 55655 46529 46529 1 0 785270 0 SVQNDSQAIAEVLNQLK QGSSHHITVKINELKSVQNDSQAIAEVLNQ QNDSQAIAEVLNQLKDMLANFRGSEKYCYL K S V L K D 2 0 2 1 0 3 1 0 0 1 2 1 0 0 0 2 0 0 0 2 0 0 17 0 1855.964 P15924 P15924 711 727 DSP Desmoplakin yes yes 2;3 9.0674E-37 211.22 By MS/MS By MS/MS By MS/MS 4.78 3.01 5 3 5 2 2 2 3 5 8 5 14 151870000 31695000 23908000 96264000 12794 572 13455 55656;55657;55658;55659;55660;55661;55662;55663;55664;55665;55666;55667;55668;55669;55670;55671;55672;55673;55674;55675;55676;55677;55678;55679;55680;55681;55682 46530;46531;46532;46533;46534;46535;46536;46537;46538;46539;46540;46541;46542;46543;46544;46545;46546;46547;46548;46549 46539 20 27809000 11341000 20132000 SVSDQFYR ______________________________ MSVNVNRSVSDQFYRYKMPRLIAKVEGKGN R S V Y R Y 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 2 0 0 1 1 0 0 8 0 1000.4614 P55010 P55010 8 15 EIF5 Eukaryotic translation initiation factor 5 yes yes 2 0.0025038 108.24 By MS/MS 4 0 1 1 6376300 0 0 6376300 12795 933 13456 55683 46550 46550 1 0 0 1041500 SVSHDLEQLHR GALLPYFVYVVSGVKSVSHDLEQLHRLLQV SGVKSVSHDLEQLHRLLQVARSLFRNPHLC K S V H R L 0 1 0 1 0 1 1 0 2 0 2 0 0 0 0 2 0 0 0 1 0 0 11 0 1319.6582 Q9Y6J9 Q9Y6J9 205 215 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 3 0.023682 57.164 By MS/MS 3 0 1 1 1462400 0 1462400 0 12796 2312 13457 55684 46551 46551 0 0 623410 0 SVSLTGAPESVQK CKVQISPDSGGLPERSVSLTGAPESVQKAK ERSVSLTGAPESVQKAKMMLDDIVSRGRGG R S V Q K A 1 0 0 0 0 1 1 1 0 0 1 1 0 0 1 3 1 0 0 2 0 0 13 0 1301.6827 Q92945 Q92945 191 203 KHSRP Far upstream element-binding protein 2 yes yes 2 0.00029516 136.02 By MS/MS By MS/MS 2.2 0.748 1 2 2 3 2 73963000 0 39320000 34643000 12797 1733 13458 55685;55686;55687;55688;55689 46552;46553;46554;46555 46552 4 0 17380000 6987800 SVSLVGEDERK VHRVGRTARAGRAGRSVSLVGEDERKMLKE RAGRSVSLVGEDERKMLKEIVKAAKAPVKA R S V R K M 0 1 0 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 0 2 0 0 11 1 1217.6252 Q96GQ7 Q96GQ7 563 573 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 1.1832E-07 162.88 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 22198000 0 11853000 10345000 12798 1793 13459 55690;55691 46556;46557 46556 2 0 5337600 2006400 SVSSVLSSLTPAK YLETHPRPPKPDPVKSVSSVLSSLTPAKVA VKSVSSVLSSLTPAKVAPVINNGSPTILGK K S V A K V 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 5 1 0 0 2 0 0 13 0 1274.7082 Q13330 Q13330 555 567 MTA1 Metastasis-associated protein MTA1 yes yes 2 0.00027903 145.46 By MS/MS 6 3 1 1 2 9493700 0 9493700 0 12799 1239 13460 55692;55693 46558;46559 46558 2 0 4374600 0 SVSTMLYLMALQELNR QLHELTPHHQSGGERSVSTMLYLMALQELN VSTMLYLMALQELNRCPFRVVDEINQGMDP R S V N R C 1 1 1 0 0 1 1 0 0 0 4 0 2 0 0 2 1 0 1 1 0 0 16 0 1867.9536 Q8IY18 Q8IY18 997 1012 SMC5 Structural maintenance of chromosomes protein 5 yes yes 3 0.015843 50.608 By MS/MS 2 0 1 1 612030 0 0 612030 12800 1588 13461 55694 46560 46560 1 0 0 138310 SVSVTLNPQGLDFVQYK IHSLLSGKPVQSGGRSVSVTLNPQGLDFVQ SVTLNPQGLDFVQYKLAEKFVKQGEEEVAS R S V Y K L 0 0 1 1 0 2 0 1 0 0 2 1 0 1 1 2 1 0 1 3 0 0 17 0 1893.9836 Q53GS7 Q53GS7 463 479 GLE1 Nucleoporin GLE1 yes yes 2 8.273E-06 124.12 By MS/MS 3 0 1 1 7207000 0 0 7207000 12801 1425 13462 55695 46561 46561 1 0 0 1397800 SVTCTYSPALNK SYGFRLGFLHSGTAKSVTCTYSPALNKMFC TAKSVTCTYSPALNKMFCQLAKTCPVQLWV K S V N K M 1 0 1 0 1 0 0 0 0 0 1 1 0 0 1 2 2 0 1 1 0 0 12 0 1339.6442 P04637 P04637 121 132 TP53 Cellular tumor antigen p53 yes yes 2 0.0025389 108.67 By MS/MS 4.5 0.5 1 1 2 16260000 0 0 16260000 12802 416 13463 55696;55697 46562;46563 46563 2 0 0 2414300 SVTEEDLCHHMKVVVR ______________________________ VTEEDLCHHMKVVVRVRPENTKEKAAGFHK M S V V R V 0 1 0 1 1 0 2 0 2 0 1 1 1 0 0 1 1 0 0 4 0 0 16 1 1937.9452 Q8NI77 Q8NI77 2 17 KIF18A Kinesin-like protein KIF18A yes yes 2 0.0024938 77.744 By MS/MS 5.5 0.5 1 1 2 28127000 0 0 28127000 12803 1649 13464 55698;55699 46564 46564 1 0 0 3935600 SVTEQGAELSNEER AEQAERYDDMAACMKSVTEQGAELSNEERN KSVTEQGAELSNEERNLLSVAYKNVVGARR K S V E R N 1 1 1 0 0 1 4 1 0 0 1 0 0 0 0 2 1 0 0 1 0 0 14 0 1547.7063 P63104 P63104 28 41 YWHAZ 14-3-3 protein zeta/delta yes yes 2 3.9201E-172 302.2 By MS/MS By MS/MS By MS/MS 6.33 0.745 1 2 3 1 2 3 135580000 2465100 12154000 120960000 12804 1059 13465 55700;55701;55702;55703;55704;55705 46565;46566;46567;46568;46569 46568 5 5312900 5354500 20163000 SVTTVQWENSFVSVYSK LGRAVFWDIKNRLPRSVTTVQWENSFVSVY TTVQWENSFVSVYSKDNPNLLFNMCGFECR R S V S K D 0 0 1 0 0 1 1 0 0 0 0 1 0 1 0 4 2 1 1 4 0 0 17 0 1959.9578 Q6P2Q9 Q6P2Q9 1164 1180 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 8.7467E-06 120.84 By MS/MS By MS/MS 1 0 2 1 1 12665000 0 3463600 9201100 12805 1490 13466 55706;55707 46570;46571 46570 2 0 1693000 1982500 SVVDFIQK EVYHGPHANSEVEVKSVVDFIQKHGNFKGF NSEVEVKSVVDFIQKHGNFKGFIDLHSYSQ K S V Q K H 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 2 0 0 8 0 934.51238 Q9UI42 Q9UI42 290 297 CPA4 Carboxypeptidase A4 yes yes 2 0.0034193 105.12 By MS/MS 4.17 2.11 1 1 1 1 1 1 6 30065000 30065000 0 0 12806 2162 13467 55708;55709;55710;55711;55712;55713 46572;46573 46572 2 35345000 0 0 SVVLMSHLGRPDGVPMPDK AAVPSIKFCLDNGAKSVVLMSHLGRPDGVP MSHLGRPDGVPMPDKYSLEPVAVELKSLLG K S V D K Y 0 1 0 2 0 0 0 2 1 0 2 1 2 0 3 2 0 0 0 3 0 0 19 1 2034.0391 P00558 P00558 57 75 PGK1 Phosphoglycerate kinase 1 yes yes 4 0.015923 43.534 By MS/MS 5 0 1 1 8726300 0 0 8726300 12807 363 13468 55714 46574 46574 1 0 0 1217200 SVVNSITGSSNVGDTLPTGQLSNIPWR SNILKELIKPPTILRSVVNSITGSSNVGDT GDTLPTGQLSNIPWRRAGVKYTNNEAYFDV R S V W R R 0 1 3 1 0 1 0 3 0 2 2 0 0 0 2 5 3 1 0 3 0 0 27 0 2798.4199 Q9Y2T2 Q9Y2T2 142 168 AP3M1 AP-3 complex subunit mu-1 yes yes 3 1.5931E-10 81.839 By MS/MS By MS/MS 5 0 2 1 1 9901100 0 5406700 4494400 12808 2250 13469 55715;55716 46575;46576 46575 1 0 1393700 626890 SVVSDLEADDVK KTSPKLSNKELKPQKSVVSDLEADDVKGSV PQKSVVSDLEADDVKGSVPLSSSPPATHFP K S V V K G 1 0 0 3 0 0 1 0 0 0 1 1 0 0 0 2 0 0 0 3 0 0 12 0 1275.6194 P11388 P11388 1374 1385 TOP2A DNA topoisomerase 2-alpha yes yes 2 7.6989E-06 134.68 By MS/MS By MS/MS 1.4 0.49 3 2 3 2 77560000 0 6570000 70990000 12809 524 13470 55717;55718;55719;55720;55721 46577;46578;46579;46580 46577 4 0 2978500 15296000 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK KTSPKLSNKELKPQKSVVSDLEADDVKGSV THFPDETEITNPVPKKNVTVKKTAAKSQSS K S V P K K 2 0 1 4 0 0 3 1 1 1 2 2 0 1 6 6 3 0 0 5 0 0 38 1 3960.948 P11388 P11388 1374 1411 TOP2A DNA topoisomerase 2-alpha yes yes 4 2.2039E-19 69.244 By MS/MS 1 0 1 1 12949000 0 0 12949000 12810 524 13471 55722 46581 46581 1 0 0 2790100 SVVTVIDVFYK ______________________________ DLLRSVVTVIDVFYKYTKQDGECGTLSKGE R S V Y K Y 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 1 4 0 0 11 0 1268.7016 CON__Q5D862;Q5D862 CON__Q5D862 7 17 FLG2 Filaggrin-2 yes no 2 0.0011108 113.22 By MS/MS By matching By MS/MS 4.75 2.71 2 1 2 1 1 1 1 2 1 6 1 5 60368000 30668000 1960100 27740000 + 12811 90 13472 55723;55724;55725;55726;55727;55728;55729;55730;55731;55732;55733;55734 46582;46583;46584;46585;46586;46587;46588;46589;46590;46591 46583 10 22461000 891760 5348700 SVYFKPSLTPSGEFR QRLMTPKPVSIATNRSVYFKPSLTPSGEFR SVYFKPSLTPSGEFRKTNQRIDNKCSTGYE R S V F R K 0 1 0 0 0 0 1 1 0 0 1 1 0 2 2 3 1 0 1 1 0 0 15 1 1713.8726 P49790 P49790 380 394 NUP153 Nuclear pore complex protein Nup153 yes yes 3 0.059501 40.237 By MS/MS 1 0 1 1 4859000 0 0 4859000 12812 870 13473 55735 46592 46592 1 0 0 1046900 SVYGGEFIQQLK CKKPLERLLNIWQERSVYGGEFIQQLKLSM QERSVYGGEFIQQLKLSMEDSKSPPPKATE R S V L K L 0 0 0 0 0 2 1 2 0 1 1 1 0 1 0 1 0 0 1 1 0 0 12 0 1367.7085 Q9NQG5 Q9NQG5 115 126 RPRD1B Regulation of nuclear pre-mRNA domain-containing protein 1B yes yes 2 0.0057785 101.46 By MS/MS By MS/MS 6 0 2 1 1 17584000 0 4839400 12745000 12813 2033 13474 55736;55737 46593;46594 46594 2 0 1675200 1906700 SVYWENTLHTLK DEIGEFSDNIEFYAKSVYWENTLHTLKQRQ YAKSVYWENTLHTLKQRQLTSYVGSVRPLV K S V L K Q 0 0 1 0 0 0 1 0 1 0 2 1 0 0 0 1 2 1 1 1 0 0 12 0 1489.7565 P57740 P57740 294 305 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 0.027978 73.499 By matching By matching By MS/MS 1.8 0.748 2 2 1 1 1 3 36364000 1922700 7227300 27214000 12814 956 13475 55738;55739;55740;55741;55742 46595;46596 46596 2 1922700 3532600 6109000 SWAQASVTHGAHGDGGR PAAPENTPLVPSGVKSWAQASVTHGAHGDG AQASVTHGAHGDGGRASSLLSRFSREEFPT K S W G R A 3 1 0 1 0 1 0 4 2 0 0 0 0 0 0 2 1 1 0 1 0 0 17 0 1692.7717 P48634 P48634 141 157 PRRC2A Protein PRRC2A yes yes 4 0.021869 43.454 By MS/MS 1 0 1 1 3467000 0 0 3467000 12815 844 13476 55743 46597 46597 1 0 0 747010 SWDIFFR EMYCAWLENPKSVHKSWDIFFRNTNAGAPP ENPKSVHKSWDIFFRNTNAGAPPGTAYQSP K S W F R N 0 1 0 1 0 0 0 0 0 1 0 0 0 2 0 1 0 1 0 0 0 0 7 0 969.47085 Q02218 Q02218 75 81 OGDH 2-oxoglutarate dehydrogenase, mitochondrial yes yes 2 0.011497 118.06 By MS/MS 2 0 1 1 2952700 0 0 2952700 12816 1144 13477 55744 46598 46598 1 0 0 667250 SWEEQMIEVGR QHAKEDETRYHNEMKSWEEQMIEVGRKDLL NEMKSWEEQMIEVGRKDLLRRTIKKQRKYG K S W G R K 0 1 0 0 0 1 3 1 0 1 0 0 1 0 0 1 0 1 0 1 0 0 11 0 1362.6238 Q00059 Q00059 217 227 TFAM Transcription factor A, mitochondrial yes yes 2 4.4863E-05 145.72 By MS/MS By MS/MS 6.5 0.764 1 1 4 2 4 161390000 0 4431100 156950000 12817 1120 13478;13479 55745;55746;55747;55748;55749;55750 46599;46600;46601;46602 46600 532 4 0 2544400 27486000 SWEEQMIEVGRK QHAKEDETRYHNEMKSWEEQMIEVGRKDLL EMKSWEEQMIEVGRKDLLRRTIKKQRKYGA K S W R K D 0 1 0 0 0 1 3 1 0 1 0 1 1 0 0 1 0 1 0 1 0 0 12 1 1490.7188 Q00059 Q00059 217 228 TFAM Transcription factor A, mitochondrial yes yes 2;3 0.00086023 125.97 By matching By MS/MS 6.8 0.4 1 4 2 3 46487000 0 4628100 41858000 12818 1120 13480 55751;55752;55753;55754;55755 46603;46604;46605 46605 3 0 2657500 7382400 SWFEPLVEDMQR NQMRLQAEAFQARLRSWFEPLVEDMQRQWA RLRSWFEPLVEDMQRQWAGLVEKVQLALRP R S W Q R Q 0 1 0 1 0 1 2 0 0 0 1 0 1 1 1 1 0 1 0 1 0 0 12 0 1535.7079 CON__Q03247;P02649 CON__Q03247 280 291 APOE Apolipoprotein E yes no 2;3 6.4297E-08 166.19 By MS/MS By MS/MS By MS/MS 6.71 1.58 1 2 5 1 2 3 4 1 9 239300000 18871000 3092100 217340000 + 12819 72 13481;13482 55756;55757;55758;55759;55760;55761;55762;55763;55764;55765;55766;55767;55768;55769 46606;46607;46608;46609;46610;46611;46612;46613;46614;46615;46616;46617;46618 46612 58 12 12853000 1070400 34898000 SWLFGINK ______________________________ ______________________________ M S W N K G 0 0 1 0 0 0 0 1 0 1 1 1 0 1 0 1 0 1 0 0 0 0 8 0 963.5178 Q9NVI7 Q9NVI7 2 9 ATAD3A ATPase family AAA domain-containing protein 3A yes yes 2 0.00010379 138.62 By MS/MS By MS/MS By MS/MS 2.67 0.943 1 1 3 1 1 4 1 43016000 1733700 16021000 25261000 12820 2066 13483 55770;55771;55772;55773;55774;55775 46619;46620;46621;46622 46620 4 2000300 5985200 4899500 SWLFGVNK ______________________________ ______________________________ M S W N K G 0 0 1 0 0 0 0 1 0 0 1 1 0 1 0 1 0 1 0 1 0 0 8 0 949.50215 Q5T9A4 Q5T9A4 2 9 ATAD3B ATPase family AAA domain-containing protein 3B yes yes 2 0.010118 83.614 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 2 1 7102500 380350 3714200 3008000 12821 1456 13484 55776;55777;55778;55779 46623;46624 46623 2 438840 1554500 583400 SWLLPVIR PLEIDGSEETLDFPRSWLLPVIRDHVQETR ETLDFPRSWLLPVIRDHVQETRLGFFTTYF R S W I R D 0 1 0 0 0 0 0 0 0 1 2 0 0 0 1 1 0 1 0 1 0 0 8 0 982.59639 Q5JTH9 Q5JTH9 567 574 RRP12 RRP12-like protein yes yes 2 0.00052101 128.75 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 20128000 0 10159000 9968800 12822 1438 13485 55780;55781;55782;55783;55784;55785 46625;46626;46627;46628;46629 46629 5 0 4669600 2164100 SWLSYSYQSR VRMQGQEAVLAMSSRSWLSYSYQSRFHLTP AMSSRSWLSYSYQSRFHLTPLSYETLEFAS R S W S R F 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 4 0 1 2 0 0 0 10 0 1275.5884 Q15393 Q15393 719 728 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.010545 88.37 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 1 3 30690000 530100 11669000 18492000 12823 1361 13486 55786;55787;55788;55789;55790 46630;46631 46630 2 530100 5254500 4020200 SWQDELAQQAEEGSAR ______________________________ WQDELAQQAEEGSARLREMLSVGLGFLRTE R S W A R L 3 1 0 1 0 3 3 1 0 0 1 0 0 0 0 2 0 1 0 0 0 0 16 0 1803.8024 Q86UE4 Q86UE4 5 20 MTDH Protein LYRIC yes yes 2 1.4681E-08 170.18 By MS/MS 2.5 0.5 1 1 2 9295400 0 0 9295400 12824 1546 13487 55791;55792 46632 46632 1 0 0 1885100 SWQGTADGGMMDRDHKR PRRDWGDHGRREDDRSWQGTADGGMMDRDH QGTADGGMMDRDHKRWQGGERSMSGHSGPG R S W K R W 1 2 0 3 0 1 0 3 1 0 0 1 2 0 0 1 1 1 0 0 0 0 17 2 1946.8476 Q15424 Q15424 832 848 SAFB Scaffold attachment factor B1 yes yes 4 0.065832 31.42 By MS/MS 2 0 1 1 4627000 0 4627000 0 12825 1364 13488 55793 46633 46633 0 0 2083600 0 SWSLATFR LLAWQSLRRDVQLIRSWSLATFRTLKPEEQ RDVQLIRSWSLATFRTLKPEEQRQALHSLE R S W F R T 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 1 0 0 0 0 8 0 966.49232 Q15149 Q15149 1045 1052 PLEC Plectin yes yes 2 0.00026251 134.85 By matching By MS/MS By MS/MS 1 0 3 1 1 1 20565000 1104800 9382500 10078000 12826 1348 13489 55794;55795;55796 46634;46635 46635 2 1104800 4586000 2171500 SWTDVSLLPAFDAVGQLSSGTKPNPQVYSR VPEALQFQLVSTALKSWTDVSLLPAFDAVG QLSSGTKPNPQVYSRLLTSGCQEGEHKACF K S W S R L 2 1 1 2 0 2 0 2 0 0 3 1 0 1 3 5 2 1 1 3 0 0 30 1 3219.62 Q9Y6K5 Q9Y6K5 539 568 OAS3 2-5-oligoadenylate synthase 3 yes yes 3 2.1398E-15 87.155 By MS/MS By MS/MS 2 0 2 1 1 6580200 0 3706700 2873600 12827 2314 13490 55797;55798 46636;46637 46637 2 0 1669200 649370 SWVGFSGGQHHTVCMDSEGK CFIPQNLTSFKNSTKSWVGFSGGQHHTVCM SGGQHHTVCMDSEGKAYSLGRAEYGRLGLG K S W G K A 0 0 0 1 1 1 1 4 2 0 0 1 1 1 0 3 1 1 0 2 0 0 20 0 2204.9368 P18754 P18754 295 314 RCC1 Regulator of chromosome condensation yes yes 4 0.00078152 63.998 By MS/MS 5 0 1 1 9959300 0 0 9959300 12828 599 13491 55799 46638 46638 1 0 0 1389100 SWVNQMESQTGEASK DKSLNIKTDPVDIYKSWVNQMESQTGEASK SWVNQMESQTGEASKLPYDVTPEQALAHEE K S W S K L 1 0 1 0 0 2 2 1 0 0 0 1 1 0 0 3 1 1 0 1 0 0 15 0 1680.7413 P46940 P46940 1097 1111 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 3.0375E-59 237.67 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 44788000 0 19688000 25101000 12829 835 13492 55800;55801;55802;55803;55804 46639;46640;46641 46640 3 0 8990400 5498500 SWVNQMESQTGEASKLPYDVTPEQALAHEEVK DKSLNIKTDPVDIYKSWVNQMESQTGEASK YDVTPEQALAHEEVKTRLDSSIRNMRAVTD K S W V K T 3 0 1 1 0 3 5 1 1 0 2 2 1 0 2 3 2 1 1 3 0 0 32 1 3600.7042 P46940 P46940 1097 1128 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 4 0.012065 27.112 By MS/MS 2 0 1 1 4049900 0 4049900 0 12830 835 13493 55805 46642 46642 1 0 1823700 0 SYCAEIAHNVSSK VHNVKELEVLLMCNKSYCAEIAHNVSSKNR NKSYCAEIAHNVSSKNRKAIVERAAQLAIR K S Y S K N 2 0 1 0 1 0 1 0 1 1 0 1 0 0 0 3 0 0 1 1 0 0 13 0 1464.6667 P62910 P62910 94 106 RPL32 60S ribosomal protein L32 yes yes 2;3 7.4086E-34 209.8 By matching By MS/MS 7.62 1.32 2 2 2 1 1 1 7 49118000 1268500 0 47849000 12831 1050 13494 55806;55807;55808;55809;55810;55811;55812;55813 46643;46644;46645;46646 46643 4 1689000 0 12078000 SYDYHQNWGR ______________________________ ______________________________ M S Y G R D 0 1 1 1 0 1 0 1 1 0 0 0 0 0 0 1 0 1 2 0 0 0 10 0 1324.5585 Q9H2U1 Q9H2U1 2 11 DHX36 ATP-dependent RNA helicase DHX36 yes yes 2 0.00064807 109.48 By MS/MS 2 0 1 1 4800800 0 4800800 0 12832 1976 13495 55814 46647 46647 1 0 2161900 0 SYELGLKTIMYYCR EDAARASTLANLLVRSYELGLKTIMYYCRI RSYELGLKTIMYYCRIEKAADLGVMECKAS R S Y C R I 0 1 0 0 1 0 1 1 0 1 2 1 1 0 0 1 1 0 3 0 0 0 14 1 1795.8637 Q3KSU5;P0C702;P03190 Q3KSU5 715 728 yes no 3 0.031934 51.211 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 37751000 0 12219000 25533000 12833 405 13496 55815;55816;55817 46648;46649;46650 46649 130 3 0 3322600 3561400 SYELPDGQVITIGNER EQEMATAASSSSLEKSYELPDGQVITIGNE YELPDGQVITIGNERFRCPEALFQPSFLGM K S Y E R F 0 1 1 1 0 1 2 2 0 2 1 0 0 0 1 1 1 0 1 1 0 0 16 0 1789.8846 P60709;A5A3E0;P63261;P68032;P63267;P68133;P62736;Q6S8J3;Q9BYX7;Q562R1 P60709 239 254 ACTB;POTEF;ACTG1;ACTC1;ACTG2;ACTA1;ACTA2;POTEE;POTEKP;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member F;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Beta-actin-like protein 2 no no 2;3 2.349E-128 270.67 By MS/MS By MS/MS By MS/MS 5.34 2.47 4 3 2 3 10 7 5 2 2 3 7 14 20 2935200000 22579000 858380000 2054300000 12834 966;1069;1075;1501;1430 13497 55818;55819;55820;55821;55822;55823;55824;55825;55826;55827;55828;55829;55830;55831;55832;55833;55834;55835;55836;55837;55838;55839;55840;55841;55842;55843;55844;55845;55846;55847;55848;55849;55850;55851;55852;55853;55854;55855;55856;55857;55858 46651;46652;46653;46654;46655;46656;46657;46658;46659;46660;46661;46662;46663;46664;46665;46666;46667;46668;46669;46670;46671;46672;46673;46674;46675;46676;46677;46678;46679;46680;46681;46682;46683;46684;46685;46686;46687;46688;46689;46690;46691;46692;46693;46694;46695;46696;46697;46698;46699;46700 46688 50 21032000 259220000 314300000 SYESLFIR SLPGAEDYIKDLETKSYESLFIRAVRAYNG IKDLETKSYESLFIRAVRAYNGENWRTSIT K S Y I R A 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 0 1 0 0 0 8 0 1013.5182 O75718 O75718 205 212 CRTAP Cartilage-associated protein yes yes 2 0.0044378 101.64 By MS/MS 5 0 1 1 2587900 0 2587900 0 12835 282 13498 55859 46701 46701 1 0 667070 0 SYESQIEVMAAEVAK TSYKQQLEAVNEAIKSYESQIEVMAAEVAK SYESQIEVMAAEVAKNKESVNKAQEEVTKQ K S Y A K N 3 0 0 0 0 1 3 0 0 1 0 1 1 0 0 2 0 0 1 2 0 0 15 0 1653.792 O95347 O95347 849 863 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.00029606 132.59 By MS/MS 1.5 0.5 1 1 2 14529000 0 0 14529000 12836 321 13499 55860;55861 46702;46703 46703 2 0 0 3230500 SYGRPPPDVEGMTSLK ______________________________ YGRPPPDVEGMTSLKVDNLTYRTSPDTLRR M S Y L K V 0 1 0 1 0 0 1 2 0 0 1 1 1 0 3 2 1 0 1 1 0 0 16 1 1732.8454 Q01130 Q01130 2 17 SRSF2 Serine/arginine-rich splicing factor 2 yes yes 2;3 2.3108E-48 227.63 By MS/MS By MS/MS 6.27 2.61 2 1 2 2 6 2 2 1 4 10 12 497820000 0 151230000 346590000 12837 1131 13500;13501 55862;55863;55864;55865;55866;55867;55868;55869;55870;55871;55872;55873;55874;55875;55876;55877;55878;55879;55880;55881;55882;55883 46704;46705;46706;46707;46708;46709;46710;46711;46712;46713;46714;46715;46716;46717;46718;46719;46720;46721;46722;46723;46724;46725;46726;46727;46728;46729 46708 546 26 0 76122000 71072000 SYGRPPPDVEGMTSLKVDNLTYR ______________________________ VEGMTSLKVDNLTYRTSPDTLRRVFEKYGR M S Y Y R T 0 2 1 2 0 0 1 2 0 0 2 1 1 0 3 2 2 0 2 2 0 0 23 2 2594.2799 Q01130 Q01130 2 24 SRSF2 Serine/arginine-rich splicing factor 2 yes yes 3 2.0332E-29 179.38 By MS/MS 6 0 2 2 31260000 0 31260000 0 12838 1131 13502 55884;55885 46730;46731 46730 2 0 10821000 0 SYIPGQPVTAVVQR ______________________________ MSYIPGQPVTAVVQRVEIHKLRQGENLILG M S Y Q R V 1 1 0 0 0 2 0 1 0 1 0 0 0 0 2 1 1 0 1 3 0 0 14 0 1513.8253 O14907 O14907 2 15 TAX1BP3 Tax1-binding protein 3 yes yes 2 0.0041811 83.081 By MS/MS 9 0 1 1 3073000 0 0 3073000 12839 150 13503 55886 46732 46732 1 0 0 981650 SYLEFSEDSVQVPR FRIYGETPEACRQARSYLEFSEDSVQVPRN RSYLEFSEDSVQVPRNLVGKVIGKNGKVIQ R S Y P R N 0 1 0 1 0 1 2 0 0 0 1 0 0 1 1 3 0 0 1 2 0 0 14 0 1654.7839 P51116 P51116 287 300 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 2 0.00041472 133.89 By MS/MS 3 0 1 1 8475600 0 0 8475600 12840 888 13504 55887 46733 46733 1 0 0 1643900 SYLENPAFMLLDLK VIDGATMSRFSNLWKSYLENPAFMLLDLK_ KSYLENPAFMLLDLK_______________ K S Y L K - 1 0 1 1 0 0 1 0 0 0 4 1 1 1 1 1 0 0 1 0 0 0 14 0 1652.8484 P11182 P11182 469 482 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 2 0.00051994 119.45 By MS/MS 4.5 0.5 1 1 2 30154000 0 0 30154000 12841 519 13505 55888;55889 46734 46734 1 0 0 4907600 SYLFNIMDTPGHVNFSDEVTAGLR KSTPVTVVLPDTKGKSYLFNIMDTPGHVNF PGHVNFSDEVTAGLRISDGVVLFIDAAEGV K S Y L R I 1 1 2 2 0 0 1 2 1 1 2 0 1 2 1 2 2 0 1 2 0 0 24 0 2682.2748 Q15029 Q15029 197 220 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 5.3093E-54 214.53 By MS/MS 1.67 0.471 1 2 3 51261000 0 0 51261000 12842 1335 13506 55890;55891;55892 46735;46736 46736 2 0 0 11543000 SYLHIPQDVGVNLR KTILHVKEMYDYQGRSYLHIPQDVGVNLRS RSYLHIPQDVGVNLRSTMPPEKCYLPKKQI R S Y L R S 0 1 1 1 0 1 0 1 1 1 2 0 0 0 1 1 0 0 1 2 0 0 14 0 1609.8576 O60508 O60508 253 266 CDC40 Pre-mRNA-processing factor 17 yes yes 2 0.02224 73.327 By MS/MS 3 0 1 1 10056000 0 0 10056000 12843 228 13507 55893 46737 46737 1 0 0 1950300 SYLMTNYESAPPSPQYK EVKVATQEGKEITCRSYLMTNYESAPPSPQ LMTNYESAPPSPQYKKIICMGAKENGLPLE R S Y Y K K 1 0 1 0 0 1 1 0 0 0 1 1 1 0 3 3 1 0 3 0 0 0 17 0 1974.9033 O75223 O75223 124 140 GGCT Gamma-glutamylcyclotransferase yes yes 2 6.0389E-48 221.8 By MS/MS By matching 6 3.16 1 1 1 1 1 1 1 1 2 9 1 36083000 35346000 0 736780 12844 248 13508 55894;55895;55896;55897;55898;55899;55900;55901;55902;55903 46738;46739;46740;46741;46742;46743;46744;46745 46738 7 38574000 0 1611400 SYLSGGAGAAGGGGADPGNK GGRVKKGGGKKSGKKSYLSGGAGAAGGGGA GAGAAGGGGADPGNKKWEQKQVQIKTLEGE K S Y N K K 4 0 1 1 0 0 0 8 0 0 1 1 0 0 1 2 0 0 1 0 0 0 20 0 1662.7598 P25490 P25490 184 203 YY1 Transcriptional repressor protein YY1 yes yes 2 1.9524E-07 107.61 By MS/MS 4 0 1 1 3052000 0 3052000 0 12845 659 13509 55904 46746 46746 1 0 1012800 0 SYLTPVRDEESESQR AGTVSSTTEVRERRRSYLTPVRDEESESQR SYLTPVRDEESESQRKARSRQARQSRRSTQ R S Y Q R K 0 2 0 1 0 1 3 0 0 0 1 0 0 0 1 3 1 0 1 1 0 0 15 1 1794.8384 O14974 O14974 668 682 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes yes 3 0.003539 71.98 By MS/MS 2 0 1 1 5992300 0 0 5992300 12846 156 13510 55905 46747 46747 1 0 0 1354200 SYNDELQFLEK ______________________________ ______________________________ R S Y E K I 0 0 1 1 0 1 2 0 0 0 2 1 0 1 0 1 0 0 1 0 0 0 11 0 1384.6511 Q9Y3I0 Q9Y3I0 4 14 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.007368 96.342 By matching By MS/MS 4.33 0.471 2 1 1 2 49206000 2120100 0 47086000 12847 2276 13511 55906;55907;55908 46748 46748 1 1654000 0 7572300 SYPGLLIVPQSVQDNALQR PFRISPVNRMYAICRSYPGLLIVPQSVQDN LLIVPQSVQDNALQRVSRCYRQNRFPVVCW R S Y Q R V 1 1 1 1 0 3 0 1 0 1 3 0 0 0 2 2 0 0 1 2 0 0 19 0 2097.1219 O95248 O95248 1165 1183 SBF1 Myotubularin-related protein 5 yes yes 3 0.0014653 63.918 By MS/MS 1 0 1 1 626280 0 626280 0 12848 315 13512 55909 46749 46749 1 0 306110 0 SYQFWDTQPVPK VGQGPAKTMEEASKRSYQFWDTQPVPKLGE SKRSYQFWDTQPVPKLGEVVNTHGPVEPDK R S Y P K L 0 0 0 1 0 2 0 0 0 0 0 1 0 1 2 1 1 1 1 1 0 0 12 0 1494.7143 P30419 P30419 116 127 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 yes yes 2 0.011756 91.549 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 45463000 0 20461000 25002000 12849 714 13513 55910;55911;55912 46750;46751 46750 2 0 6790400 4008200 SYQSFQTFR NLIQSTLALSDSQMKSYQSFQTFRLYREYK SDSQMKSYQSFQTFRLYREYKDHVLVKAFM K S Y F R L 0 1 0 0 0 2 0 0 0 0 0 0 0 2 0 2 1 0 1 0 0 0 9 0 1162.5407 Q12789 Q12789 1446 1454 GTF3C1 General transcription factor 3C polypeptide 1 yes yes 2 0.050058 71.491 By MS/MS 1 0 1 1 2415800 0 2415800 0 12850 1198 13514 55913 46752 46752 1 0 1180800 0 SYRDQTIVDPFSSK ______________________________ RSYRDQTIVDPFSSKHNVIVGRNGSGKSNF R S Y S K H 0 1 0 2 0 1 0 0 0 1 0 1 0 1 1 3 1 0 1 1 0 0 14 1 1641.7999 Q9UQE7 Q9UQE7 13 26 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 0.0020684 127.78 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 20992000 0 12553000 8439000 12851 2222 13515 55914;55915 46753;46754 46753 2 0 5652900 1818300 SYSCQVTHEGSTVEK SSYLSLTPEQWKSHKSYSCQVTHEGSTVEK SYSCQVTHEGSTVEKTVAPTECS_______ K S Y E K T 0 0 0 0 1 1 2 1 1 0 0 1 0 0 0 3 2 0 1 2 0 0 15 0 1710.7519 P0DOY3;P0DOY2;P0CF74;P0DOX8;P0CG04;B9A064 P0DOY3 84 98 IGLC6;IGLC1;IGLL5 Ig lambda-6 chain C region;Ig lambda-1 chain C regions;Immunoglobulin lambda-like polypeptide 5 yes no 2;3 2.8527E-18 194.98 By MS/MS 6.2 2.32 2 1 2 5 43005000 43005000 0 0 12852 498 13516 55916;55917;55918;55919;55920 46755;46756;46757;46758 46758 4 26375000 0 0 SYSLLFR VSSNEFEPSNSHMVKSYSLLFRVTRPGRRE PSNSHMVKSYSLLFRVTRPGRREFNGMING K S Y F R V 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 2 0 0 1 0 0 0 7 0 884.4756 Q15022 Q15022 247 253 SUZ12 Polycomb protein SUZ12 yes yes 2 0.0099724 120.9 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 8077500 0 3453400 4624100 12853 1333 13517 55921;55922 46759;46760 46760 2 0 1555100 896860 SYSPDGKESPSDKK NRGIDLLKKDKSRKRSYSPDGKESPSDKKS RSYSPDGKESPSDKKSKTDGSQKTESSTEG R S Y K K S 0 0 0 2 0 0 1 1 0 0 0 3 0 0 2 4 0 0 1 0 0 0 14 2 1523.7104 P43243 P43243 596 609 MATR3 Matrin-3 yes yes 3 0.02416 58.831 By MS/MS 2 0 1 1 966360 0 966360 0 12854 812 13518 55923 46761 46761 1 0 435170 0 SYSPYDMLESIR ERSVPHLQKVFDRYKSYSPYDMLESIRKEV RYKSYSPYDMLESIRKEVKGDLENAFLNLV K S Y I R K 0 1 0 1 0 0 1 0 0 1 1 0 1 0 1 3 0 0 2 0 0 0 12 0 1459.6653 P07355;A6NMY6 P07355 234 245 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 3.5798E-08 169.92 By MS/MS By MS/MS By MS/MS 6.2 1.47 2 2 1 2 1 2 76336000 2904200 0 73431000 12855 459 13519 55924;55925;55926;55927;55928 46762;46763;46764;46765;46766 46766 5 1630100 0 10848000 SYSPYDMLESIRK ERSVPHLQKVFDRYKSYSPYDMLESIRKEV YKSYSPYDMLESIRKEVKGDLENAFLNLVQ K S Y R K E 0 1 0 1 0 0 1 0 0 1 1 1 1 0 1 3 0 0 2 0 0 0 13 1 1587.7603 P07355;A6NMY6 P07355 234 246 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2;3 0.00046094 146.11 By MS/MS By MS/MS 5.5 0.764 1 1 4 3 3 25221000 0 9229000 15992000 12856 459 13520 55929;55930;55931;55932;55933;55934 46767;46768;46769;46770 46770 4 0 3179600 2355000 SYSQQLFLALK KKYGKDVGLHIKAVRSYSQQLFLALKLLKR KAVRSYSQQLFLALKLLKRCNILHADIKPD R S Y L K L 1 0 0 0 0 2 0 0 0 0 3 1 0 1 0 2 0 0 1 0 0 0 11 0 1296.7078 Q13523 Q13523 794 804 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 2 0.0087987 93.551 By MS/MS 2 0 1 1 3804300 0 3804300 0 12857 1255 13521 55935 46771 46771 1 0 1713100 0 SYSVGASGSSSR LISSLKDCLHGIEAKSYSVGASGSSSRKRH EAKSYSVGASGSSSRKRHRSRERSPSRSRE K S Y S R K 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 6 0 0 1 1 0 0 12 0 1143.5156 Q8N684 Q8N684 407 418 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 0.0016003 111.46 By MS/MS 3.5 0.5 1 1 2 2610800 0 0 2610800 12858 1610 13522 55936;55937 46772;46773 46773 2 0 0 462190 SYTIHYSDQGTDWKPYR VTQGCKSLSSEMYVKSYTIHYSDQGTDWKP TIHYSDQGTDWKPYREKSSMVDKIFEGNNN K S Y Y R E 0 1 0 2 0 1 0 1 1 1 0 1 0 0 1 2 2 1 3 0 0 0 17 1 2115.965 CON__Q28107 CON__Q28107 2139 2155 yes yes 3 0.00074476 80.361 By MS/MS 4 0 1 1 7740000 0 0 7740000 + 12859 77 13523 55938 46774 46774 1 0 0 1264200 SYTPGVGGDPAQLAQR ______________________________ YTPGVGGDPAQLAQRISSNIQKITQCSVEI M S Y Q R I 2 1 0 1 0 2 0 3 0 0 1 0 0 0 2 1 1 0 1 1 0 0 16 0 1615.7954 O15400 O15400 2 17 STX7 Syntaxin-7 yes yes 2 0.00066548 93.345 By MS/MS 6 0 1 1 2539300 0 2539300 0 12860 181 13524 55939 46775 46775 1 0 879010 0 SYTVGVMMMHR FHHKMVDNRGFMVTRSYTVGVMMMHRTGLY MVTRSYTVGVMMMHRTGLYNYYDDEKEKLQ R S Y H R T 0 1 0 0 0 0 0 1 1 0 0 0 3 0 0 1 1 0 1 2 0 0 11 0 1310.5934 P50454 P50454 229 239 SERPINH1 Serpin H1 yes yes 2;3 8.4342E-32 150.4 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 7810000 0 0 7810000 12861 879 13525 55940;55941;55942 46776;46777 46776 2 0 0 1120900 SYVTTSTR MFGGPGTASRPSSSRSYVTTSTRTYSLGSA SRPSSSRSYVTTSTRTYSLGSALRPSTSRS R S Y T R T 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 1 1 0 0 8 0 913.45051 P08670 P08670 29 36 VIM Vimentin yes yes 2 0.0002785 133.6 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 82291000 0 21532000 60759000 12862 476 13526 55943;55944;55945;55946 46778;46779;46780;46781 46781 4 0 7310500 10295000 TAAALAPASLTSAR RSAHATAPVNIAGSRTAAALAPASLTSARM RTAAALAPASLTSARMAPALSGANLTSPRV R T A A R M 6 1 0 0 0 0 0 0 0 0 2 0 0 0 1 2 2 0 0 0 0 0 14 0 1299.7147 Q9UQ35 Q9UQ35 2357 2370 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 6.9435E-12 183.33 By MS/MS By MS/MS 3.82 2.44 2 2 2 2 1 1 1 7 4 153160000 0 73053000 80108000 12863 2219 13527 55947;55948;55949;55950;55951;55952;55953;55954;55955;55956;55957 46782;46783;46784;46785;46786;46787;46788;46789;46790;46791;46792 46792 11 0 30407000 16380000 TAADELEAFLGGGAPGGR ERRRRQQRPPRSRERTAADELEAFLGGGAP DELEAFLGGGAPGGRHPGGGDYEEL_____ R T A G R H 4 1 0 1 0 0 2 5 0 0 2 0 0 1 1 0 1 0 0 0 0 0 18 0 1687.8166 Q3YEC7 Q3YEC7 702 719 RABL6 Rab-like protein 6 yes yes 2 2.1516E-08 138.45 By MS/MS 7 0 1 1 5635700 0 0 5635700 12864 1413 13528 55958 46793 46793 1 0 0 1000000 TAAENDFVTLK VEDYKKKYEDEINKRTAAENDFVTLKKDVD INKRTAAENDFVTLKKDVDNAYMIKVELQS R T A L K K 2 0 1 1 0 0 1 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1207.6085 CON__P35908;CON__P35908v2;P35908 CON__P35908 282 292 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 6.7418E-05 142.43 By MS/MS By MS/MS By MS/MS 5.12 2.75 3 2 3 3 3 3 3 2 3 8 6 11 5146000000 3250800000 117410000 1777800000 + 12865 65;66 13529 55959;55960;55961;55962;55963;55964;55965;55966;55967;55968;55969;55970;55971;55972;55973;55974;55975;55976;55977;55978;55979;55980;55981;55982;55983 46794;46795;46796;46797;46798;46799;46800;46801;46802;46803;46804;46805;46806;46807;46808;46809;46810;46811;46812;46813;46814;46815;46816;46817;46818;46819 46799 26 3458000000 106640000 863020000 TAAENDFVTLKK VEDYKKKYEDEINKRTAAENDFVTLKKDVD NKRTAAENDFVTLKKDVDNAYMIKVELQSK R T A K K D 2 0 1 1 0 0 1 0 0 0 1 2 0 1 0 0 2 0 0 1 0 0 12 1 1335.7034 CON__P35908;CON__P35908v2;P35908 CON__P35908 282 293 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 8.1556E-18 192.21 By MS/MS By MS/MS By MS/MS 5.15 2.92 6 6 5 5 5 3 6 4 3 5 20 15 13 9337500000 7127100000 370540000 1839900000 + 12866 65;66 13530 55984;55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999;56000;56001;56002;56003;56004;56005;56006;56007;56008;56009;56010;56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031 46820;46821;46822;46823;46824;46825;46826;46827;46828;46829;46830;46831;46832;46833;46834;46835;46836;46837;46838;46839;46840;46841;46842;46843;46844;46845;46846;46847;46848;46849;46850;46851;46852;46853;46854;46855;46856;46857;46858;46859;46860;46861;46862;46863;46864;46865;46866;46867;46868 46836 48 7093000000 291910000 796500000 TAAENDFVVLKK VEDFKTKYEEEINKRTAAENDFVVLKKDVD NKRTAAENDFVVLKKDVDAAYLNKVELEAK R T A K K D 2 0 1 1 0 0 1 0 0 0 1 2 0 1 0 0 1 0 0 2 0 0 12 1 1333.7242 CON__P19013;P19013 CON__P19013 309 320 KRT4 Keratin, type II cytoskeletal 4 no no 2;3 0.0014476 120.09 By MS/MS 1.5 0.5 2 2 4 77719000 77719000 0 0 + 12867 61 13531 56032;56033;56034;56035 46869;46870 46870 2 78644000 0 0 TAAENEFVGLKK VEDFKKKYEDEINKRTAAENEFVGLKKDVD NKRTAAENEFVGLKKDVDAAFMNKVELQAK R T A K K D 2 0 1 0 0 0 2 1 0 0 1 2 0 1 0 0 1 0 0 1 0 0 12 1 1305.6929 CON__Q01546;Q01546 Q01546 281 292 KRT76 Keratin, type II cytoskeletal 2 oral no no 3 0.0015481 96.067 By MS/MS By matching 1.5 0.5 1 1 1 1 11448000 6054500 0 5393800 + 12868 71;1135 13532 56036;56037 46871 46871 1 6054500 0 1218900 TAAENEFVTLK VEDLKNKYEDEINKRTAAENEFVTLKKDVD INKRTAAENEFVTLKKDVDAAYMNKVELQA R T A L K K 2 0 1 0 0 0 2 0 0 0 1 1 0 1 0 0 2 0 0 1 0 0 11 0 1221.6241 P02538;CON__P02538;CON__P04259;CON__P12035;P12035;CON__P48668;P48668;CON__P50446 CON__P48668 261 271 KRT6A;KRT3;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 6C no no 2 2.7485E-05 148.69 By MS/MS By matching By MS/MS 5.77 2.94 1 1 1 3 1 1 2 1 2 9 1 3 328620000 256210000 3048200 69363000 + 12869 68;37;47;69;54 13533 56038;56039;56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050 46872;46873;46874;46875;46876;46877;46878;46879 46877 8 228650000 1011600 27077000 TAAENEFVTLKK VEDLKNKYEDEINKRTAAENEFVTLKKDVD NKRTAAENEFVTLKKDVDAAYMNKVELQAK R T A K K D 2 0 1 0 0 0 2 0 0 0 1 2 0 1 0 0 2 0 0 1 0 0 12 1 1349.7191 P02538;CON__P02538;CON__P04259;CON__P12035;P12035;CON__P48668;P48668;CON__P50446 CON__P48668 261 272 KRT6A;KRT3;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 6C no no 2;3 1.0661E-15 141.1 By MS/MS By MS/MS By MS/MS 4.53 2.54 4 6 5 7 3 4 3 3 1 2 21 6 11 678230000 531710000 17456000 129060000 + 12870 68;37;47;69;54 13534 56051;56052;56053;56054;56055;56056;56057;56058;56059;56060;56061;56062;56063;56064;56065;56066;56067;56068;56069;56070;56071;56072;56073;56074;56075;56076;56077;56078;56079;56080;56081;56082;56083;56084;56085;56086;56087;56088 46880;46881;46882;46883;46884;46885;46886;46887;46888;46889;46890;46891;46892;46893;46894;46895;46896;46897;46898;46899;46900;46901;46902;46903;46904 46895 24 555590000 6837100 25885000 TAAFALPVLER LGKDICACAATGTGKTAAFALPVLERLIYK GTGKTAAFALPVLERLIYKPRQAPVTRVLV K T A E R L 3 1 0 0 0 0 1 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 11 0 1186.671 Q96GQ7 Q96GQ7 269 279 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 8.6084E-10 170.47 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 49010000 976540 17368000 30666000 12871 1793 13535 56089;56090;56091;56092 46905;46906;46907 46906 3 1176600 7820800 6376100 TAAFIWPMLIHIMDQK SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQ AAFIWPMLIHIMDQKELEPGDGPIAVIVCP K T A Q K E 2 0 0 1 0 1 0 0 1 3 1 1 2 1 1 0 1 1 0 0 0 0 16 0 1913.9896 Q86XP3 Q86XP3 304 319 DDX42 ATP-dependent RNA helicase DDX42 yes yes 3 0.01656 50.079 By MS/MS 2 0 1 1 1680600 0 0 1680600 12872 1559 13536 56093 46908 46908 1 0 0 379790 TAAFLLPILSQIYSDGPGEALR EKRDLMACAQTGSGKTAAFLLPILSQIYSD ILSQIYSDGPGEALRAMKENGRYGRRKQYP K T A L R A 3 1 0 1 0 1 1 2 0 2 4 0 0 1 2 2 1 0 1 0 0 0 22 0 2331.2474 O00571 O00571 231 252 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2;3 2.1888E-28 179.39 By MS/MS 2.64 1.07 2 3 3 3 11 161280000 0 0 161280000 12873 131 13537 56094;56095;56096;56097;56098;56099;56100;56101;56102;56103;56104 46909;46910;46911;46912;46913;46914;46915;46916;46917 46911 9 0 0 32095000 TAAFVLPILQK EGRDCLGCAKTGSGKTAAFVLPILQKLSED GSGKTAAFVLPILQKLSEDPYGIFCLVLTP K T A Q K L 2 0 0 0 0 1 0 0 0 1 2 1 0 1 1 0 1 0 0 1 0 0 11 0 1199.7278 Q9Y6V7 Q9Y6V7 53 63 DDX49 Probable ATP-dependent RNA helicase DDX49 yes yes 2 0.037372 76.827 By MS/MS 4.5 0.5 1 1 2 4784900 0 4784900 0 12874 2317 13538 56105;56106 46918 46918 1 0 1461500 0 TAASGIPYHSEVPVSLK CVINNQEMGFYKDAKTAASGIPYHSEVPVS ASGIPYHSEVPVSLKEAVCEVALDYKKKKH K T A L K E 2 0 0 0 0 0 1 1 1 1 1 1 0 0 2 3 1 0 1 2 0 0 17 0 1754.9203 Q01082 Q01082 2242 2258 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 9.1151E-06 147.33 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 92730000 0 21750000 70981000 12875 1128 13539 56107;56108;56109;56110 46919;46920;46921 46921 3 0 10631000 15351000 TAATLATHELR LTSQTKLHEDLCEKRTAATLATHELRAVKG CEKRTAATLATHELRAVKGPLLYCARPPQD R T A L R A 3 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 0 0 11 0 1182.6357 Q8N1G4 Q8N1G4 371 381 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 9.2233E-27 202.44 By matching By MS/MS 3.33 0.471 2 1 1 2 30756000 4538000 0 26218000 12876 1600 13540 56111;56112;56113 46922 46922 1 5235900 0 5030800 TAATSVPAYEPLDSLDR DWVPPPPPVRERSTRTAATSVPAYEPLDSL ATSVPAYEPLDSLDRRRDGWSLDRDRGDRD R T A D R R 3 1 0 2 0 0 1 0 0 0 2 0 0 0 2 2 2 0 1 1 0 0 17 0 1804.8843 Q96T37 Q96T37 600 616 RBM15 Putative RNA-binding protein 15 yes yes 2 7.9782E-06 126.34 By MS/MS By MS/MS 2 0 2 1 1 19919000 0 5063900 14855000 12877 1838 13541 56114;56115 46923;46924 46924 2 0 2280300 3357000 TAAYAIPMLQLLLHR EGKDLLARARTGSGKTAAYAIPMLQLLLHR TAAYAIPMLQLLLHRKATGPVVEQAVRGLV K T A H R K 3 1 0 0 0 1 0 0 1 1 4 0 1 0 1 0 1 0 1 0 0 0 15 0 1709.9651 Q9NY93 Q9NY93 58 72 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2;3 2.6291E-07 166.66 By MS/MS By MS/MS 3.67 0.471 2 4 2 4 37837000 0 11840000 25997000 12878 2095 13542 56116;56117;56118;56119;56120;56121 46925;46926;46927;46928 46927 4 0 3929400 4512000 TADEVPLK KMILEIMHKEAKDTKTADEVPLKILAHNNF KEAKDTKTADEVPLKILAHNNFVGRLIGKE K T A L K I 1 0 0 1 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 8 0 871.4651 Q9NZI8 Q9NZI8 273 280 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 0.0056944 98.997 By MS/MS 3 0 1 1 13340000 0 13340000 0 12879 2104 13543 56122 46929 46929 1 0 5687000 0 TADVTSLFGGEDTSR SVKKLKRAVNLPRSKTADVTSLFGGEDTSR TADVTSLFGGEDTSRSSTRGSLNPENPVQV K T A S R S 1 1 0 2 0 0 1 2 0 0 1 0 0 1 0 2 3 0 0 1 0 0 15 0 1554.7162 O00443 O00443 614 628 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.012483 74.392 By MS/MS 1 0 1 1 3743200 0 0 3743200 12880 122 13544 56123 46930 46930 1 0 0 806530 TAEDDETPVDLNK LQLLTFSAMCQNLARTAEDDETPVDLNKHL ARTAEDDETPVDLNKHLYQIEKPCKEAMTR R T A N K H 1 0 1 3 0 0 2 0 0 0 1 1 0 0 1 0 2 0 0 1 0 0 13 0 1445.6522 O00443 O00443 520 532 PIK3C2A Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha yes yes 2 0.017167 80.706 By MS/MS 1 0 1 1 6810500 0 0 6810500 12881 122 13545 56124 46931 46931 1 0 0 1467400 TAEEENPEHVEIQK AEIYEQEYIKLNQQKTAEEENPEHVEIQKM KTAEEENPEHVEIQKMMDSLFLKLDALSNF K T A Q K M 1 0 1 0 0 1 5 0 1 1 0 1 0 0 1 0 1 0 0 1 0 0 14 0 1651.7689 O00566 O00566 485 498 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 3 0.071038 33.842 By matching By MS/MS 3.5 1.12 1 1 1 1 1 3 20445000 0 3771700 16674000 12882 129 13546 56125;56126;56127;56128 46932 46932 1 0 1698500 2945500 TAEEVAALIR VWAGQKRLGQLAKWKTAEEVAALIRSLPVE LAKWKTAEEVAALIRSLPVEEQPKQIIVTR K T A I R S 3 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 0 1071.5924 Q6P2Q9 Q6P2Q9 1841 1850 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 4.5457E-49 171.53 By matching By MS/MS By MS/MS 1.2 0.4 4 1 1 3 1 45344000 2302300 5057600 37984000 12883 1490 13547 56129;56130;56131;56132;56133 46933;46934;46935;46936 46933 4 2302300 2277500 8184200 TAENATSGETLEENEAGD ASRKTQKKKKKKASKTAENATSGETLEENE NATSGETLEENEAGD_______________ K T A G D - 3 0 2 1 0 0 5 2 0 0 1 0 0 0 0 1 3 0 0 0 0 0 18 0 1836.7497 Q9UQ80 Q9UQ80 377 394 PA2G4 Proliferation-associated protein 2G4 yes yes 2 1.8956E-16 178.15 By MS/MS By MS/MS By MS/MS 5 0 3 1 1 1 168590000 59073000 20491000 89026000 12884 2220 13548 56134;56135;56136 46937;46938;46939;46940 46937 4 47325000 5282000 12418000 TAESQTPTPSATSFFSGK SEESSHYSTEKESEKTAESQTPTPSATSFF SQTPTPSATSFFSGKSPVTTLLECMHKLGN K T A G K S 2 0 0 0 0 1 1 1 0 0 0 1 0 2 2 4 4 0 0 0 0 0 18 0 1842.8636 P55265 P55265 596 613 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 2.4442E-16 176.08 By matching By MS/MS By MS/MS 3.33 1.15 3 2 2 2 1 4 4 94483000 3879700 34962000 55641000 12885 941 13549 56137;56138;56139;56140;56141;56142;56143;56144;56145 46941;46942;46943;46944;46945;46946;46947 46943 6 4674600 13813000 11413000 TAETGYIQR HAMGGREGLIDTAVKTAETGYIQRRLIKSM IDTAVKTAETGYIQRRLIKSMESVMVKYDA K T A Q R R 1 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 9 0 1037.5142 P24928 P24928 854 862 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.032784 76.478 By MS/MS 1 0 1 1 1374400 0 1374400 0 12886 653 13550 56146 46948 46948 1 0 671790 0 TAFQEALDAAGDK ______________________________ SKTAFQEALDAAGDKLVVVDFSATWCGPCK K T A D K L 4 0 0 2 0 1 1 1 0 0 1 1 0 1 0 0 1 0 0 0 0 0 13 0 1335.6307 P10599 P10599 9 21 TXN Thioredoxin yes yes 2 0.0018179 109.24 By MS/MS By MS/MS By MS/MS 6.83 3.34 2 1 2 2 2 3 6 1 5 258120000 95360000 15634000 147120000 12887 512 13551 56147;56148;56149;56150;56151;56152;56153;56154;56155;56156;56157;56158 46949;46950;46951;46952;46953;46954;46955;46956;46957;46958;46959;46960 46952 11 90124000 79093000 68067000 TAGEEEMIK FIRCNEAGDIEAKSKTAGEEEMIKIRSCAE IEAKSKTAGEEEMIKIRSCAERETKKKDDI K T A I K I 1 0 0 0 0 0 3 1 0 1 0 1 1 0 0 0 1 0 0 0 0 0 9 0 1006.4641 Q14331 Q14331 171 179 FRG1 Protein FRG1 yes yes 2 0.055875 69.812 By matching By MS/MS 6 0 2 1 1 11450000 1256200 0 10194000 12888 1300 13552 56159;56160 46961 46961 1 1672700 0 1525100 TAGPLESSETEEASQLK QTSACRLQEELEKLRTAGPLESSETEEASQ GPLESSETEEASQLKERLEKEKKLTSDLGR R T A L K E 2 0 0 0 0 1 4 1 0 0 2 1 0 0 1 3 2 0 0 0 0 0 17 0 1775.8425 Q9P2E9 Q9P2E9 1334 1350 RRBP1 Ribosome-binding protein 1 yes yes 2 5.8549E-06 150.14 By MS/MS 1.67 0.471 1 2 3 26583000 0 0 26583000 12889 2122 13553 56161;56162;56163 46962;46963 46962 2 0 0 5911600 TAGTLFGEGFR LKAAEHRQTVLESIRTAGTLFGEGFRAFVT ESIRTAGTLFGEGFRAFVTDWDKVTATVAG R T A F R A 1 1 0 0 0 0 1 3 0 0 1 0 0 2 0 0 2 0 0 0 0 0 11 0 1154.572 Q5T9A4;Q9NVI7 Q9NVI7 276 286 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 4.8452E-10 172.28 By MS/MS By MS/MS By MS/MS 3.17 0.687 1 3 2 1 3 2 110970000 7794500 34611000 68568000 12890 2066;1456 13554 56164;56165;56166;56167;56168;56169 46964;46965;46966;46967;46968 46966 5 8993100 13388000 13179000 TAGWNIPMGLLYNK DNLKGKKSCHTAVGRTAGWNIPMGLLYNKI RTAGWNIPMGLLYNKINHCRFDEFFSEGCA R T A N K I 1 0 2 0 0 0 0 2 0 1 2 1 1 0 1 0 1 1 1 0 0 0 14 0 1576.8072 P02787 P02787 476 489 TF Serotransferrin yes yes 2 4.7106E-07 164.43 By MS/MS 5.57 3.33 1 1 1 1 1 1 1 7 53167000 53167000 0 0 12891 399 13555 56170;56171;56172;56173;56174;56175;56176 46969;46970;46971;46972;46973;46974;46975 46973 7 41285000 0 0 TAGWNIPMGLLYSK NNLKDKKSCHTAVDRTAGWNIPMGLLYSKI RTAGWNIPMGLLYSKINNCKFDEFFSAGCA R T A S K I 1 0 1 0 0 0 0 2 0 1 2 1 1 0 1 1 1 1 1 0 0 0 14 0 1549.7963 CON__Q29443;CON__Q0IIK2 CON__Q29443 461 474 yes no 2 0.0011752 108.72 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 24052000 8640400 15412000 0 + 12892 74 13556 56177;56178;56179;56180 46976;46977;46978;46979 46976 4 9993200 5945400 0 TAGWNVPIGTLR NELQGLKSCHTGLRRTAGWNVPIGTLRPFL LRRTAGWNVPIGTLRPFLNWTGPPEPIEAA R T A L R P 1 1 1 0 0 0 0 2 0 1 1 0 0 0 1 0 2 1 0 1 0 0 12 0 1283.6986 P02788 P02788 141 152 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 7.3577E-08 164.97 By MS/MS By matching 5.5 2.87 1 1 1 1 1 1 1 1 1 1 9 1 39201000 33014000 6186500 0 12893 400 13557 56181;56182;56183;56184;56185;56186;56187;56188;56189;56190 46980;46981;46982;46983;46984;46985 46985 6 43406000 4953900 0 TAGYPNVNIHNFTTSWR KKSAKDALLLWCQMKTAGYPNVNIHNFTTS GYPNVNIHNFTTSWRDGMAFNALIHKHRPD K T A W R D 1 1 3 0 0 0 0 1 1 1 0 0 0 1 1 1 3 1 1 1 0 0 17 0 1976.9493 Q01082 Q01082 187 203 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3 7.8816E-06 104.2 By MS/MS By MS/MS 1 0 2 1 1 32906000 0 14210000 18696000 12894 1128 13558 56191;56192 46986;46987 46987 2 0 6945700 4028300 TAIHEVMEQGR VVCIDEFDKMSDMDRTAIHEVMEQGRVTIA DMDRTAIHEVMEQGRVTIAKAGIHARLNAR R T A G R V 1 1 0 0 0 1 2 1 1 1 0 0 1 0 0 0 1 0 0 1 0 0 11 0 1269.6136 P25205 P25205 420 430 MCM3 DNA replication licensing factor MCM3 yes yes 2;3 1.7272E-15 132.01 By MS/MS 2.75 0.829 2 1 1 4 15652000 0 0 15652000 12895 655 13559 56193;56194;56195;56196 46988;46989 46988 2 0 0 3092200 TAITVEHLAIK STYEQVDLIGKKTQKTAITVEHLAIKCHWT KTQKTAITVEHLAIKCHWTQRAAVIGDVIR K T A I K C 2 0 0 0 0 0 1 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1194.6972 Q9NR30 Q9NR30 407 417 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.00032712 128.27 By MS/MS By MS/MS 2.5 0.5 2 2 2 2 80364000 0 20266000 60098000 12896 2038 13560 56197;56198;56199;56200 46990;46991;46992 46991 3 0 8899500 12827000 TALAATNPAVR GFSGLNVKAFISNVKTALAATNPAVRTAAI SNVKTALAATNPAVRTAAITLLGVMYLYVG K T A V R T 4 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 2 0 0 1 0 0 11 0 1083.6037 Q14008 Q14008 762 772 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00025214 135 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 65863000 0 19938000 45924000 12897 1279 13561 56201;56202;56203;56204 46993;46994;46995;46996 46995 3 0 9526800 9963000 TALALAIAQELGSK AGRAVLLAGPPGTGKTALALAIAQELGSKV KTALALAIAQELGSKVPFCPMVGSEVYSTE K T A S K V 4 0 0 0 0 1 1 1 0 1 3 1 0 0 0 1 1 0 0 0 0 0 14 0 1384.7926 Q9Y265 Q9Y265 77 90 RUVBL1 RuvB-like 1 yes yes 2;3 6.7925E-25 201.46 By matching By MS/MS By MS/MS 4.38 1.49 1 1 3 1 1 1 1 1 6 67106000 510060 8771300 57825000 12898 2234 13562 56205;56206;56207;56208;56209;56210;56211;56212 46997;46998;46999;47000;47001 46997 4 614560 2910900 9497400 TALEMVQAAGTDR KISGLKTSMAEGERKTALEMVQAAGTDRHC RKTALEMVQAAGTDRHCVTFVLHEEDHTLG K T A D R H 3 1 0 1 0 1 1 1 0 0 1 0 1 0 0 0 2 0 0 1 0 0 13 0 1361.6609 P0DPB6 P0DPB6 25 37 yes yes 2 7.5593E-13 185.08 By matching By MS/MS 7.75 0.829 2 1 1 1 3 14950000 1256400 0 13693000 12899 506 13563 56213;56214;56215;56216 47002 47002 1 2707900 0 3187800 TALFEEISR QGAVESIAMKNPKERTALFEEISRSGELAQ KNPKERTALFEEISRSGELAQEYDKRKKEM R T A S R S 1 1 0 0 0 0 2 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 9 0 1064.5502 Q14683 Q14683 152 160 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 1.5824E-23 190.51 By matching By MS/MS By MS/MS 1.83 0.687 2 3 1 1 2 3 119140000 3156700 27888000 88098000 12900 1312 13564 56217;56218;56219;56220;56221;56222 47003;47004;47005;47006;47007 47006 5 3803400 12847000 19329000 TALIHDGLAR GGVMDVNTALQEVLKTALIHDGLARGIREA QEVLKTALIHDGLARGIREAAKALDKRQAH K T A A R G 2 1 0 1 0 0 0 1 1 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1065.5931 P25398 P25398 24 33 RPS12 40S ribosomal protein S12 yes yes 2 0.0022158 106.42 By MS/MS By MS/MS By MS/MS 9.4 0.49 3 2 1 2 2 174550000 13534000 67148000 93865000 12901 657 13565 56223;56224;56225;56226;56227 47008;47009;47010 47010 3 7596800 69779000 40733000 TALILGGDR TLKFTKELGKFTGLKTALILGGDRMEDQFA KFTGLKTALILGGDRMEDQFAALHENPDII K T A D R M 1 1 0 1 0 0 0 2 0 1 2 0 0 0 0 0 1 0 0 0 0 0 9 0 914.51853 Q8TDD1 Q8TDD1 197 205 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.062094 68.016 By matching By MS/MS 1.5 0.5 1 1 1 1 4834700 1297100 3537700 0 12902 1661 13566 56228;56229 47011 47011 1 1297100 1593100 0 TALINSTGEEVAMR VWKAQNTWGCGNSLRTALINSTGEEVAMRK RTALINSTGEEVAMRKLVRSVTVVEDDEDE R T A M R K 2 1 1 0 0 0 2 1 0 1 1 0 1 0 0 1 2 0 0 1 0 0 14 0 1490.7399 P02545 P02545 528 541 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 2.6421E-72 238.73 By MS/MS By MS/MS By MS/MS 5.12 2.91 2 3 5 2 2 2 1 2 3 2 1 12 11 1107600000 29611000 288190000 789840000 12903 387 13567;13568 56230;56231;56232;56233;56234;56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245;56246;56247;56248;56249;56250;56251;56252;56253 47012;47013;47014;47015;47016;47017;47018;47019;47020;47021;47022;47023;47024;47025;47026;47027;47028;47029;47030;47031;47032 47024 126 21 34164000 149310000 207540000 TALLDAAGVASLLTTAEVVVTEIPKEEK NMVEKGIIDPTKVVRTALLDAAGVASLLTT TTAEVVVTEIPKEEKDPGMGAMGGMGGGMG R T A E K D 5 0 0 1 0 0 4 1 0 1 4 2 0 0 1 1 4 0 0 4 0 0 28 1 2867.5743 P10809 P10809 527 554 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 3;4 1.3662E-06 61.732 By MS/MS 3.67 0.471 1 2 3 5101200 0 0 5101200 12904 515 13569 56254;56255;56256 47033;47034;47035 47034 3 0 0 854670 TALLPSDSVFAEER NSDLEKKGAEIINPKTALLPSDSVFAEERN KTALLPSDSVFAEERNLKGILEESPSEAED K T A E R N 2 1 0 1 0 0 2 0 0 0 2 0 0 1 1 2 1 0 0 1 0 0 14 0 1533.7675 Q14966 Q14966 1221 1234 ZNF638 Zinc finger protein 638 yes yes 2 0.0014804 106.49 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 21340000 2769100 4868900 13702000 12905 1324 13570 56257;56258;56259;56260 47036;47037;47038 47037 3 2769100 2379800 2988400 TALLSLFGIPLWYHSQSPR ASVISTRCSETYETKTALLSLFGIPLWYHS SLFGIPLWYHSQSPRVILQPDVHPGNCWAF K T A P R V 1 1 0 0 0 1 0 1 1 1 4 0 0 1 2 3 1 1 1 0 0 0 19 0 2185.1684 Q9UH99 Q9UH99 571 589 SUN2 SUN domain-containing protein 2 yes yes 3 0.00013453 78.674 By MS/MS 3 0.816 1 1 1 3 20186000 0 0 20186000 12906 2148 13571 56261;56262;56263 47039 47039 1 0 0 3919900 TALNLFFK THSNLQPVHMILVLRTALNLFFKLKNFKTA HMILVLRTALNLFFKLKNFKTAATFARRLL R T A F K L 1 0 1 0 0 0 0 0 0 0 2 1 0 2 0 0 1 0 0 0 0 0 8 0 952.5382 P53621 P53621 1107 1114 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.066331 68.915 By matching By MS/MS By MS/MS 2.6 0.8 3 1 1 1 3 1 9616600 763580 5973000 2879900 12907 922 13572 56264;56265;56266;56267;56268 47040;47041 47041 2 920020 2606500 650810 TALPAQSAATLPAR ESSPIPSPTSDRKAKTALPAQSAATLPART KTALPAQSAATLPARTQETPSAQMEGFLNR K T A A R T 5 1 0 0 0 1 0 0 0 0 2 0 0 0 2 1 2 0 0 0 0 0 14 0 1366.7569 Q01082 Q01082 2178 2191 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00016528 152.64 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 112130000 0 40982000 71144000 12908 1128 13573 56269;56270;56271 47042;47043 47042 2 0 19930000 15329000 TALSAVDMTQR VHPGASMVINEDGSRTALSAVDMTQREAVA DGSRTALSAVDMTQREAVAKQLLTPATGAP R T A Q R E 2 1 0 1 0 1 0 0 0 0 1 0 1 0 0 1 2 0 0 1 0 0 11 0 1191.5918 O95602 O95602 505 515 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.00032812 128.86 By MS/MS 1 0 1 1 9810400 0 9810400 0 12909 330 13574 56272 47044 47044 1 0 4795200 0 TALVANTSNMPVAAR LTMEVDGKVESIMKRTALVANTSNMPVAAR TALVANTSNMPVAAREASIYTGITLSEYFR R T A A R E 4 1 2 0 0 0 0 0 0 0 1 0 1 0 1 1 2 0 0 2 0 0 15 0 1514.7875 P38606 P38606 309 323 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 4.201E-51 166.69 By MS/MS 3.5 0.5 1 1 2 4690700 0 4690700 0 12910 773 13575 56273;56274 47045;47046 47045 2 0 1556700 0 TALYVTPLDR ERFVVTAPPARNRSKTALYVTPLDRVTEFG RNRSKTALYVTPLDRVTEFGGELHEDGGKL K T A D R V 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 1 0 0 10 0 1147.6237 Q9UFW8 Q9UFW8 17 26 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 2 0.0064959 94.692 By MS/MS By MS/MS 7.4 1.02 1 2 1 1 1 4 34106000 0 10660000 23446000 12911 2141 13576 56275;56276;56277;56278;56279 47047;47048 47047 2 0 6120900 4207600 TAMEVEAPSKPAR RRKLLQQIRLAQKEKTAMEVEAPSKPARTS EKTAMEVEAPSKPARTSEPQLKRQKKTKAP K T A A R T 3 1 0 0 0 0 2 0 0 0 0 1 1 0 2 1 1 0 0 1 0 0 13 1 1385.6973 E9PRG8 E9PRG8 84 96 C11orf98 Uncharacterized protein C11orf98 yes yes 2 1.9741E-11 117.67 By MS/MS 7 0 1 1 0 0 0 0 12912 103 13577 56280 47049 47049 1 0 0 0 TAMNVNEIFMAIAK YADDNSLLFMETSAKTAMNVNEIFMAIAKK KTAMNVNEIFMAIAKKLPKNEPQNATGAPG K T A A K K 3 0 2 0 0 0 1 0 0 2 0 1 2 1 0 0 1 0 0 1 0 0 14 0 1551.7789 P51148 P51148 167 180 RAB5C Ras-related protein Rab-5C yes yes 2 0.054173 62.408 By MS/MS 7 0 1 1 11447000 0 0 11447000 12913 889 13578 56281 47050 47050 0 0 0 2031200 TAMSLIER HQVMVFVHARNATVRTAMSLIERAKNCGHI ARNATVRTAMSLIERAKNCGHIPFFFPTQG R T A E R A 1 1 0 0 0 0 1 0 0 1 1 0 1 0 0 1 1 0 0 0 0 0 8 0 919.4797 Q8N3C0 Q8N3C0 731 738 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.025101 95.531 By MS/MS 1 0 1 1 0 0 0 0 12914 1602 13579 56282 47051 47051 1 0 0 0 TANDMIHAENMR ALTSELANARDESKKTANDMIHAENMRLGR SKKTANDMIHAENMRLGRDKYKTLRQIRQG K T A M R L 2 1 2 1 0 0 1 0 1 1 0 0 2 0 0 0 1 0 0 0 0 0 12 0 1401.6129 P26038 P26038 539 550 MSN Moesin yes yes 2;3 0.00014272 136.5 By MS/MS 3 0 2 2 15470000 0 15470000 0 12915 664 13580 56283;56284 47052;47053 47053 2 0 6594900 0 TANKDHLVTAYNHLFETK LAEHKLLGNIKNVAKTANKDHLVTAYNHLF KDHLVTAYNHLFETKRFKGTESISKVSEQV K T A T K R 2 0 2 1 0 0 1 0 2 0 2 2 0 1 0 0 3 0 1 1 0 0 18 1 2101.0593 Q00688 Q00688 53 70 FKBP3 Peptidyl-prolyl cis-trans isomerase FKBP3 yes yes 3;4 0.0018066 66.76 By matching By MS/MS 6.4 0.49 3 2 1 4 90926000 0 7169500 83756000 12916 1126 13581 56285;56286;56287;56288;56289 47054;47055 47055 2 0 2481800 13496000 TAPLLLSYYLIK GTGQLFQAQQDLLHRTAPLLLSYYLIKWGS LHRTAPLLLSYYLIKWGSECLATDVPLDTL R T A I K W 1 0 0 0 0 0 0 0 0 1 4 1 0 0 1 1 1 0 2 0 0 0 12 0 1393.8221 Q12769 Q12769 766 777 NUP160 Nuclear pore complex protein Nup160 yes yes 2 0.058138 70.977 By MS/MS 2 0.816 1 1 1 3 7238800 0 0 7238800 12917 1196 13582 56290;56291;56292 47056 47056 1 0 0 1530800 TAPTSTIAPGVVMASSPALPTQPAEEAAR VVQAASGDVQTYQIRTAPTSTIAPGVVMAS SSPALPTQPAEEAARKREVRLMKNREAARE R T A A R K 7 1 0 0 0 1 2 1 0 1 1 0 1 0 5 3 4 0 0 2 0 0 29 0 2820.4328 P16220 P16220 256 284 CREB1 Cyclic AMP-responsive element-binding protein 1 yes yes 3 4.5957E-07 62.284 By MS/MS By MS/MS 6 0.894 2 1 2 3 2 19781000 0 9924500 9856100 12918 575 13583 56293;56294;56295;56296;56297 47057;47058;47059 47057 3 0 3091500 1560400 TAQAIEPYITNFFNQVLMLGK LNKQAYDLAKALLKRTAQAIEPYITNFFNQ PYITNFFNQVLMLGKTSISDLSEHVFDLIL R T A G K T 2 0 2 0 0 2 1 1 0 2 2 1 1 2 1 0 2 0 1 1 0 0 21 0 2397.2403 Q9NTI5 Q9NTI5 225 245 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 0.002324 58.752 By MS/MS 1.33 0.471 2 1 3 11457000 0 0 11457000 12919 2053 13584 56298;56299;56300 47060;47061 47060 2 0 0 2547600 TAQEVETYR FEKNFYQEHPDLARRTAQEVETYRRSKEIT PDLARRTAQEVETYRRSKEITVRGHNCPKP R T A Y R R 1 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 9 0 1095.5197 P17844 P17844 69 77 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 0.00052504 135.71 By MS/MS 3.5 0.5 1 1 2 12545000 0 12545000 0 12920 588 13585 56301;56302 47062;47063 47062 2 0 5196300 0 TAQEVETYRR FEKNFYQEHPDLARRTAQEVETYRRSKEIT DLARRTAQEVETYRRSKEITVRGHNCPKPV R T A R R S 1 2 0 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 10 1 1251.6208 P17844 P17844 69 78 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2;3 0.00078823 105.2 By MS/MS By MS/MS 3.43 0.495 4 3 4 3 17746000 0 6984200 10761000 12921 588 13586 56303;56304;56305;56306;56307;56308;56309 47064;47065;47066;47067;47068 47064 5 0 2803500 2070900 TAQNFLSIFLK DQDVVITNSYETAMRTAQNFLSIFLKKCGS TAMRTAQNFLSIFLKKCGSKQGEEDYRPLF R T A L K K 1 0 1 0 0 1 0 0 0 1 2 1 0 2 0 1 1 0 0 0 0 0 11 0 1280.7129 Q6KC79 Q6KC79 1537 1547 NIPBL Nipped-B-like protein yes yes 2 0.0070871 96.89 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 18497000 0 2316800 16180000 12922 1480 13587 56310;56311;56312;56313 47069;47070;47071 47069 2 0 1132400 3471100 TARPNITDNKDGTITVR QKGELTGEVRMPSGKTARPNITDNKDGTIT RPNITDNKDGTITVRYAPTEKGLHQMGIKY K T A V R Y 1 2 2 2 0 0 0 1 0 2 0 1 0 0 1 0 4 0 0 1 0 0 17 2 1870.9861 Q14315 Q14315 1809 1825 FLNC Filamin-C yes yes 4 0.00011695 97.095 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 24354000 0 18075000 6278700 12923 1298 13588 56314;56315;56316 47072;47073 47072 2 0 8719000 1352800 TASALFAGFR GAGIAAAMERASERRTASALFAGFRALGLF ASERRTASALFAGFRALGLFSNDIPHVVRF R T A F R A 3 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 1 0 0 0 0 0 10 0 1039.5451 Q8NI36 Q8NI36 65 74 WDR36 WD repeat-containing protein 36 yes yes 2 3.3525E-16 175.38 By MS/MS 1 0 1 1 4516900 0 0 4516900 12924 1648 13589 56317 47074 47074 1 0 0 973250 TASMLWLLQQEMVTWR KIVSRATPGLQKFSKTASMLWLLQQEMVTW ASMLWLLQQEMVTWRLLASLYRDRIQSALE K T A W R L 1 1 0 0 0 2 1 0 0 0 3 0 2 0 0 1 2 2 0 1 0 0 16 0 1991.9961 P57740 P57740 205 220 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3 1.4712E-109 269.72 By MS/MS 1.67 0.471 1 2 3 10799000 0 0 10799000 12925 956 13590 56318;56319;56320 47075;47076 47075 2 0 0 2435500 TASNVEEAFINTAK FAREHGLIFMETSAKTASNVEEAFINTAKE KTASNVEEAFINTAKEIYEKIQEGVFDINN K T A A K E 3 0 2 0 0 0 2 0 0 1 0 1 0 1 0 1 2 0 0 1 0 0 14 0 1493.7362 P61019 P61019 152 165 RAB2A Ras-related protein Rab-2A yes yes 2 0.00058759 140.63 By MS/MS 7 0 1 1 7507300 0 0 7507300 12926 975 13591 56321 47077 47077 1 0 0 1332100 TASPLEHILQTLFGK AASTAASSTASSASKTASPLEHILQTLFGK TASPLEHILQTLFGKKKSFDPSAREPPGST K T A G K K 1 0 0 0 0 1 1 1 1 1 3 1 0 1 1 1 2 0 0 0 0 0 15 0 1653.909 Q9BTC0 Q9BTC0 1310 1324 DIDO1 Death-inducer obliterator 1 yes yes 3 0.043778 41.542 By MS/MS 1.5 0.5 1 1 2 3462200 0 0 3462200 12927 1900 13592 56322;56323 47078 47078 1 0 0 760910 TASVFLLEK WSCDGRRLASGSFDKTASVFLLEKDRLVKE SGSFDKTASVFLLEKDRLVKENNYRGHGDS K T A E K D 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 9 0 1006.5699 Q96J01 Q96J01 78 86 THOC3 THO complex subunit 3 yes yes 2 0.062176 67.993 By matching By MS/MS 4.5 1.12 1 1 1 1 2 2 16147000 5122600 0 11025000 12928 1800 13593 56324;56325;56326;56327 47079 47079 1 5107700 0 1589600 TASVLSKDDVAPESGDTTVK EKQKERKKKRQQARKTASVLSKDDVAPESG SKDDVAPESGDTTVKKPESKKEQTPEHGKK K T A V K K 2 0 0 3 0 0 1 1 0 0 1 2 0 0 1 3 3 0 0 3 0 0 20 1 2019.0008 O76021 O76021 312 331 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2;3 1.2561E-20 177.39 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 3 2 68260000 0 27456000 40804000 12929 295 13594 56328;56329;56330;56331;56332 47080;47081;47082 47081 3 0 10855000 7914000 TATDEAYKDPSNLQGK RDSDELKSWVNEKMKTATDEAYKDPSNLQG ATDEAYKDPSNLQGKVQKHQAFEAELSANQ K T A G K V 2 0 1 2 0 1 1 1 0 0 1 2 0 0 1 1 2 0 1 0 0 0 16 1 1736.8217 Q13813 Q13813 595 610 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 8.297E-128 276.47 By MS/MS By MS/MS 1 0 4 2 2 86378000 0 34512000 51866000 12930 1268 13595 56333;56334;56335;56336 47083;47084;47085;47086 47086 4 0 16869000 11175000 TATESFASDPILYRPVAVALDTK HGTHEYHAETIKNVRTATESFASDPILYRP DPILYRPVAVALDTKGPEIRTGLIKGSGTA R T A T K G 4 1 0 2 0 0 1 0 0 1 2 1 0 1 2 2 3 0 1 2 0 0 23 1 2464.285 P14618 P14618 93 115 PKM Pyruvate kinase PKM yes yes 3 1.0767E-19 124.08 By MS/MS By MS/MS 4.5 2.5 1 1 1 2 1 1 1 1 7 58700000 0 10189000 48511000 12931 559 13596 56337;56338;56339;56340;56341;56342;56343;56344 47087;47088;47089;47090;47091 47087 5 0 3381400 9188600 TATGAISAVFGR RGLSVDSAQEVKRFRTATGAISAVFGRSQS RFRTATGAISAVFGRSQSLPGADSLLAKPI R T A G R S 3 1 0 0 0 0 0 2 0 1 0 0 0 1 0 1 2 0 0 1 0 0 12 0 1149.6142 Q9Y4A5 Q9Y4A5 2063 2074 TRRAP Transformation/transcription domain-associated protein yes yes 2 0.04709 73.887 By MS/MS 1 0 1 1 1478500 0 1478500 0 12932 2285 13597 56345 47092 47092 1 0 722670 0 TATLRPYLSAVR ______________________________ ______________________________ M T A V R A 2 2 0 0 0 0 0 0 0 0 2 0 0 0 1 1 2 0 1 1 0 0 12 1 1346.767 P59998 P59998 2 13 ARPC4 Actin-related protein 2/3 complex subunit 4 yes yes 2 2.6661E-08 165.63 By MS/MS By MS/MS 7.86 1.25 1 2 2 1 1 4 3 106770000 0 57437000 49332000 12933 960 13598 56346;56347;56348;56349;56350;56351;56352 47093;47094;47095;47096;47097 47095 5 0 28683000 10010000 TATPQQAQEVHEK VVLAYEPVWAIGTGKTATPQQAQEVHEKLR GKTATPQQAQEVHEKLRGWLKSNVSDAVAQ K T A E K L 2 0 0 0 0 3 2 0 1 0 0 1 0 0 1 0 2 0 0 1 0 0 13 0 1465.7161 P60174 P60174 213 225 TPI1 Triosephosphate isomerase yes yes 2;3 0.0003757 108.59 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 20636000 0 2012800 18624000 12934 962 13599 56353;56354;56355;56356 47098;47099;47100;47101 47100 4 0 1155700 3263700 TATVGGAMMGSTHIYDMSTVMSR GSETPQLFTVLPEKRTATVGGAMMGSTHIY MGSTHIYDMSTVMSRKGPAPELQGVEVALA R T A S R K 2 1 0 1 0 0 0 3 1 1 0 0 4 0 0 3 4 0 1 2 0 0 23 0 2403.0691 Q13435 Q13435 792 814 SF3B2 Splicing factor 3B subunit 2 yes yes 3 6.0058E-12 108.59 By MS/MS By matching 2.67 0.471 1 2 2 1 15777000 0 13309000 2468600 12935 1248 13600 56357;56358;56359 47102;47103 47103 2 0 5853500 478800 TAVAPIER AKDFLAGGVAAAISKTAVAPIERVKLLLQV VAAAISKTAVAPIERVKLLLQVQHASKQIT K T A E R V 2 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 8 0 855.48142 P05141;Q9H0C2;P12235;P12236 P05141 24 31 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.0044503 101.6 By matching By MS/MS 6 0 2 1 1 44432000 0 10813000 33619000 12936 427;533;534 13601 56360;56361 47104 47104 1 0 3743000 5029800 TAVAPSAVNLADPR RTPAAAAAMNLASPRTAVAPSAVNLADPRT RTAVAPSAVNLADPRTPTAPAVNLAGARTP R T A P R T 4 1 1 1 0 0 0 0 0 0 1 0 0 0 2 1 1 0 0 2 0 0 14 0 1380.7361 Q9UQ35 Q9UQ35 2275 2288 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0018993 103.44 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 4 1 57285000 0 36115000 21170000 12937 2219 13602 56362;56363;56364;56365;56366 47105;47106;47107 47106 3 0 16523000 4561400 TAVCDIPPR KNSSYFVEWIPNNVKTAVCDIPPRGLKMSA IPNNVKTAVCDIPPRGLKMSATFIGNSTAI K T A P R G 1 1 0 1 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 1 0 0 9 0 1027.5121 P07437;A6NNZ2;P68371;Q13885;Q9BVA1;P04350;Q3ZCM7 P68371 351 359 TUBB;TUBB4B;TUBB2A;TUBB2B;TUBB4A;TUBB8 Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4A chain;Tubulin beta-8 chain no no 2 0.0070215 93.429 By matching By MS/MS 4.5 0.5 1 1 1 1 11101000 0 1280100 9821200 12938 1079;462;1274;414;1415 13603 56367;56368 47108 47108 1 0 424830 1369900 TAVDSLVAYSVK KASVSQVEADLKMLRTAVDSLVAYSVKIET MLRTAVDSLVAYSVKIETNENNLESAKGLL R T A V K I 2 0 0 1 0 0 0 0 0 0 1 1 0 0 0 2 1 0 1 3 0 0 12 0 1251.6711 Q07065 Q07065 555 566 CKAP4 Cytoskeleton-associated protein 4 yes yes 2 0.00059875 123.79 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 48178000 0 24267000 23912000 12939 1176 13604 56369;56370;56371 47109;47110;47111 47109 2 0 9929800 4637800 TAVETAVLLLR LGIWEPLAVKLQTYKTAVETAVLLLRIDDI QTYKTAVETAVLLLRIDDIVSGHKKKGDDQ K T A L R I 2 1 0 0 0 0 1 0 0 0 3 0 0 0 0 0 2 0 0 2 0 0 11 0 1184.7129 P49368 P49368 508 518 CCT3 T-complex protein 1 subunit gamma yes yes 2 5.2042E-05 144.5 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 30905000 2633600 18376000 9895100 12940 854 13605 56372;56373;56374;56375 47112;47113;47114 47112 3 2054700 6098400 1771000 TAVHAGNINFK ______________________________ ______________________________ M T A F K W 2 0 2 0 0 0 0 1 1 1 0 1 0 1 0 0 1 0 0 1 0 0 11 0 1170.6146 P35221 P35221 2 12 CTNNA1 Catenin alpha-1 yes yes 2 0.0007527 100.57 By MS/MS 2 0 1 1 0 0 0 0 12941 739 13606 56376 47115 47115 1 0 0 0 TAVISIGNQLLHLK FFEFSKEVDEKSSLKTAVISIGNQLLHLKE KTAVISIGNQLLHLKETDTATLRASLAQFE K T A L K E 1 0 1 0 0 1 0 1 1 2 3 1 0 0 0 1 1 0 0 1 0 0 14 0 1505.893 Q8WXH0 Q8WXH0 5006 5019 SYNE2 Nesprin-2 yes yes 3 0.00036767 102.66 By MS/MS 1 0 1 1 3560400 0 0 3560400 12942 1696 13607 56377 47116 47116 1 0 0 767150 TAVLTAFANGR LMFEHYNIPAFFLCKTAVLTAFANGRSTGL FLCKTAVLTAFANGRSTGLILDSGATHTTA K T A G R S 3 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1119.6037 O96019;O94805 O96019 154 164 ACTL6A;ACTL6B Actin-like protein 6A;Actin-like protein 6B yes no 2 2.0873E-09 164.57 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 23824000 0 11027000 12798000 12943 354 13608 56378;56379;56380;56381 47117;47118 47118 2 0 3346200 1785000 TAVSGIRPENLK YDKYVKPTEPVTDYRTAVSGIRPENLKQGE DYRTAVSGIRPENLKQGEELEVVQKEVAEM R T A L K Q 1 1 1 0 0 0 1 1 0 1 1 1 0 0 1 1 1 0 0 1 0 0 12 1 1283.7197 Q9GZR2 Q9GZR2 291 302 REXO4 RNA exonuclease 4 yes yes 2 0.0055814 121.29 By MS/MS By MS/MS 4 0 2 1 1 23984000 0 5684300 18300000 12944 1951 13609 56382;56383 47119;47120 47120 2 0 1886400 2989000 TAVTGSLSENDPLR PLDQKLKYQIDKLIKTAVTGSLSENDPLRF KTAVTGSLSENDPLRFKPHPSNMMSKLSSE K T A L R F 1 1 1 1 0 0 1 1 0 0 2 0 0 0 1 2 2 0 0 1 0 0 14 0 1458.7314 Q8NEJ9 Q8NEJ9 116 129 NGDN Neuroguidin yes yes 2 2.2044E-17 191.55 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 27279000 0 5962500 21317000 12945 1639 13610 56384;56385;56386 47121;47122;47123 47123 2 0 2064000 3134900 TAVTTVPSMGIGLVK GGVAWIGGKSLEVTKTAVTTVPSMGIGLVK TAVTTVPSMGIGLVKGGVSAVAGGVTAVGS K T A V K G 1 0 0 0 0 0 0 2 0 1 1 1 1 0 1 1 3 0 0 3 0 0 15 0 1472.8273 Q8WUH6 Q8WUH6 70 84 TMEM263 Transmembrane protein 263 yes yes 2 0.0038054 72.152 By MS/MS 8 0 1 1 0 0 0 0 12946 1673 13611 56387 47124 47124 1 0 0 0 TAVVVGTITDDVR SRMIRKMKLPGRENKTAVVVGTITDDVRVQ NKTAVVVGTITDDVRVQEVPKLKVCALRVT K T A V R V 1 1 0 2 0 0 0 1 0 1 0 0 0 0 0 0 3 0 0 4 0 0 13 0 1344.7249 Q07020 Q07020 79 91 RPL18 60S ribosomal protein L18 yes yes 2 6.0324E-45 222.3 By MS/MS By MS/MS By MS/MS 7.36 1.15 2 6 1 1 1 1 4 6 466310000 8084200 105750000 352480000 12947 1174 13612 56388;56389;56390;56391;56392;56393;56394;56395;56396;56397;56398 47125;47126;47127;47128;47129;47130;47131;47132;47133;47134;47135 47128 11 17423000 59521000 66635000 TAWNPLGEAAPPGELYR DVANIISGSGRPRRRTAWNPLGEAAPPGEL WNPLGEAAPPGELYRRTLDSDEERPRPAPP R T A Y R R 3 1 1 0 0 0 2 2 0 0 2 0 0 0 3 0 1 1 1 0 0 0 17 0 1840.9108 Q9BW71 Q9BW71 509 525 HIRIP3 HIRA-interacting protein 3 yes yes 2 1.0156E-05 146.43 By MS/MS 5 2 1 1 2 11688000 0 0 11688000 12948 1921 13613 56399;56400 47136;47137 47136 2 0 0 2187200 TAWSALWLAVVAPGK QILRRIGAVGQAVSRTAWSALWLAVVAPGK TAWSALWLAVVAPGKAASGVFWWLGIGWYQ R T A G K A 4 0 0 0 0 0 0 1 0 0 2 1 0 0 1 1 1 2 0 2 0 0 15 0 1568.8715 O94901 O94901 267 281 SUN1 SUN domain-containing protein 1 yes yes 2 0.011056 75.566 By MS/MS 2 0 1 1 4220100 0 0 4220100 12949 303 13614 56401 47138 47138 1 0 0 953650 TAWVFDDK LEYTKDEQLESLFQRTAWVFDDKYKRPGYG LESLFQRTAWVFDDKYKRPGYGAYDAFKHA R T A D K Y 1 0 0 2 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 0 8 0 980.46035 P05198 P05198 134 141 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.016776 86.833 By MS/MS 5.5 0.5 1 1 2 26067000 0 0 26067000 12950 428 13615 56402;56403 47139 47139 1 0 0 3866500 TAWVFDDKYK LEYTKDEQLESLFQRTAWVFDDKYKRPGYG SLFQRTAWVFDDKYKRPGYGAYDAFKHAVS R T A Y K R 1 0 0 2 0 0 0 0 0 0 0 2 0 1 0 0 1 1 1 1 0 0 10 1 1271.6186 P05198 P05198 134 143 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2;3 0.054262 90.629 By matching By MS/MS 5.75 0.433 1 3 2 2 79275000 0 9410100 69865000 12951 428 13616 56404;56405;56406;56407 47140;47141 47140 2 0 3134600 10453000 TAYLLYYR KVINQYQVVKPTAERTAYLLYYRRVDLL__ VKPTAERTAYLLYYRRVDLL__________ R T A Y R R 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 3 0 0 0 8 0 1061.5546 Q14694 Q14694 786 793 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes yes 2 0.0015557 114.19 By MS/MS 2 0 1 1 2126300 0 2126300 0 12952 1316 13617 56408 47142 47142 1 0 957520 0 TCPLLLR EEIKKEPEKPIDREKTCPLLLRVFTTNNGR EKPIDREKTCPLLLRVFTTNNGRHHRMDEF K T C L R V 0 1 0 0 1 0 0 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 7 0 871.49496 O00422 O00422 25 31 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2 0.048413 77.72 By matching By MS/MS 7 0 2 1 1 25794000 0 4656400 21138000 12953 120 13618 56409;56410 47143 47143 1 0 2673800 3750800 TCPVQLWVDSTPPPGTR TYSPALNKMFCQLAKTCPVQLWVDSTPPPG PVQLWVDSTPPPGTRVRAMAIYKQSQHMTE K T C T R V 0 1 0 1 1 1 0 1 0 0 1 0 0 0 4 1 3 1 0 2 0 0 17 0 1909.9356 P04637 P04637 140 156 TP53 Cellular tumor antigen p53 yes yes 2 1.4643E-13 180.61 By MS/MS 5 0 1 1 5774500 0 0 5774500 12954 416 13619 56411 47144 47144 1 0 0 805430 TCTTVAFTQVNSEDK IIKGKARLGRLVHRKTCTTVAFTQVNSEDK TCTTVAFTQVNSEDKGALAKLVEAIRTNYN K T C D K G 1 0 1 1 1 1 1 0 0 0 0 1 0 1 0 1 4 0 0 2 0 0 15 0 1699.7723 P62424 P62424 198 212 RPL7A 60S ribosomal protein L7a yes yes 2 7.9644E-46 224.58 By MS/MS 6 0 1 1 21572000 0 0 21572000 12955 1026 13620 56412 47145 47145 1 0 0 3227400 TCVADESAENCDK EDHVKLVNEVTEFAKTCVADESAENCDKSL AKTCVADESAENCDKSLHTLFGDKLCTVAT K T C D K S 2 0 1 2 2 0 2 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 13 0 1497.5712 CON__P02768-1;P02768 CON__P02768-1 76 88 ALB Serum albumin yes no 2 1.3466E-45 226.71 By MS/MS 9 0 1 1 29655000 29655000 0 0 + 12956 44 13621 56413 47146;47147;47148;47149 47146 4 16645000 0 0 TDAASKPFAEVR VISGQEVVREIENQKTDAASKPFAEVRILS NQKTDAASKPFAEVRILSCGELIPKSKVKK K T D V R I 3 1 0 1 0 0 1 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 12 1 1290.6568 Q13427 Q13427 159 170 PPIG Peptidyl-prolyl cis-trans isomerase G yes yes 2 3.1642E-06 115.18 By MS/MS 2 0 1 1 0 0 0 0 12957 1246 13622 56414 47150 47150 1 0 0 0 TDAAVSFAK ______________________________ ______________________________ M T D A K D 3 0 0 1 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 0 0 9 0 908.46035 P05141 P05141 2 10 SLC25A5 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed yes yes 2 0.011397 79.893 By MS/MS By matching 6 0 2 1 1 44210000 0 13882000 30328000 12958 427 13623 56415;56416 47151 47151 1 0 4805600 4537400 TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK GGFKNFGGHRDYGPRTDADSESDNSDNNTI LGEGVSTDQVGEFFKQIGIIKTNKKTGKPM R T D F K Q 1 0 3 5 0 2 3 4 0 1 1 1 0 3 0 4 3 0 0 3 0 0 34 0 3621.5867 Q92804 Q92804 222 255 TAF15 TATA-binding protein-associated factor 2N yes yes 3 9.6258E-07 46.54 By MS/MS 2 0 1 1 1062200 0 0 1062200 12959 1723 13624 56417 47152 47152 1 0 0 240030 TDAVEALTALNHYQIR PSAKTLSGLLEWECKTDAVEALTALNHYQI DAVEALTALNHYQIRVPNGSNPYTLKLCFS K T D I R V 3 1 1 1 0 1 1 0 1 1 2 0 0 0 0 0 2 0 1 1 0 0 16 0 1813.9323 Q8WVV9 Q8WVV9 507 522 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes yes 2;3 5.7662E-05 143.79 By MS/MS 4 0 2 2 8721200 0 8721200 0 12960 1685 13625 56418;56419 47153;47154 47154 2 0 2894300 0 TDDIPVWDQEFLK DDPPPPEDDENKEKRTDDIPVWDQEFLKVD KRTDDIPVWDQEFLKVDQGTLFELILAANY R T D L K V 0 0 0 3 0 1 1 0 0 1 1 1 0 1 1 0 1 1 0 1 0 0 13 0 1604.7722 P63208 P63208 82 94 SKP1 S-phase kinase-associated protein 1 yes yes 2 0.066617 65.5 By MS/MS 7 0 1 1 4976000 0 0 4976000 12961 1065 13626 56420 47155 47155 1 0 0 882950 TDEEGKDVPDHAVLEMK ICPTDEDLKDRTIKRTDEEGKDVPDHAVLE EEGKDVPDHAVLEMKANFTLPDVGDFLDEV R T D M K A 1 0 0 3 0 0 3 1 1 0 1 2 1 0 1 0 1 0 0 2 0 0 17 1 1911.8884 Q9BUJ2 Q9BUJ2 546 562 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 3 0.0010794 76.526 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 31972000 0 4373800 27599000 12962 1907 13627 56421;56422;56423 47156;47157 47157 2 0 1969600 6029700 TDEGIAYR ADVTRRLSEDYGVLKTDEGIAYRGLFIIDG EDYGVLKTDEGIAYRGLFIIDGKGVLRQIT K T D Y R G 1 1 0 1 0 0 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 8 0 923.43486 P32119 P32119 120 127 PRDX2 Peroxiredoxin-2 yes yes 2 1.4151E-10 134.44 By MS/MS By matching 7.67 0.943 2 1 2 1 13807000 4323500 0 9483400 12963 727 13628 56424;56425;56426 47158;47159 47159 2 9318000 0 1682800 TDGALLVNAMFFKPHWDEK TTDGKLPEVTKDVERTDGALLVNAMFFKPH LLVNAMFFKPHWDEKFHHKMVDNRGFMVTR R T D E K F 2 0 1 2 0 0 1 1 1 0 2 2 1 2 1 0 1 1 0 1 0 0 19 1 2218.0881 P50454 P50454 195 213 SERPINH1 Serpin H1 yes yes 4 0.00036168 73.928 By MS/MS 4.5 0.5 1 1 2 5474400 0 0 5474400 12964 879 13629 56427;56428 47160 47160 1 0 0 799560 TDGDDTETVPSEQSHASGK PGNKGRGQRGNTESKTDGDDTETVPSEQSH DTETVPSEQSHASGKLRKKKKKQKNKKSST K T D G K L 1 0 0 3 0 1 2 2 1 0 0 1 0 0 1 3 3 0 0 1 0 0 19 0 1959.8294 Q9BQ70 Q9BQ70 106 124 TCF25 Transcription factor 25 yes yes 3 0.00012024 81.854 By MS/MS 3 0 1 1 4016200 0 0 4016200 12965 1880 13630 56429 47161 47161 1 0 0 778960 TDITYPAGFMDVISIDK KICMQRFIKIDGKVRTDITYPAGFMDVISI ITYPAGFMDVISIDKTGENFRLIYDTKGRF R T D D K T 1 0 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 1 0 0 17 0 1884.9179 P62701 P62701 78 94 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 7.4836E-06 130.07 By MS/MS By MS/MS 6.29 0.881 1 4 1 1 2 5 231780000 0 19956000 211820000 12966 1029 13631;13632 56430;56431;56432;56433;56434;56435;56436 47162;47163;47164;47165;47166;47167;47168 47162 490 7 0 6908100 32752000 TDITYPAGFMDVISIDKTGENFR KICMQRFIKIDGKVRTDITYPAGFMDVISI FMDVISIDKTGENFRLIYDTKGRFAVHRIT R T D F R L 1 1 1 3 0 0 1 2 0 3 0 1 1 2 1 1 3 0 1 1 0 0 23 1 2589.2421 P62701 P62701 78 100 RPS4X 40S ribosomal protein S4, X isoform yes yes 3 1.3538E-05 77.576 By MS/MS 6 0 1 1 2965800 0 2965800 0 12967 1029 13633 56437 47169 47169 1 0 1026700 0 TDLEKDIISDTSGDFR QELQEINRVYKEMYKTDLEKDIISDTSGDF DLEKDIISDTSGDFRKLMVALAKGRRAEDG K T D F R K 0 1 0 4 0 0 1 1 0 2 1 1 0 1 0 2 2 0 0 0 0 0 16 1 1810.8585 P07355;A6NMY6 P07355 153 168 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2;3 1.7884E-05 145.17 By MS/MS 5.67 0.471 1 2 3 23696000 0 0 23696000 12968 459 13634 56438;56439;56440 47170;47171 47171 2 0 0 3498900 TDLEKDIISDTSGDFRK QELQEINRVYKEMYKTDLEKDIISDTSGDF LEKDIISDTSGDFRKLMVALAKGRRAEDGS K T D R K L 0 1 0 4 0 0 1 1 0 2 1 2 0 1 0 2 2 0 0 0 0 0 17 2 1938.9535 P07355;A6NMY6 P07355 153 169 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2;3 8.1174E-06 107.57 By MS/MS By MS/MS 5.75 0.433 1 3 1 3 42909000 0 7079500 35829000 12969 459 13635 56441;56442;56443;56444 47172;47173;47174 47172 2 0 2450700 5319300 TDLEMQIEGLKEELAYLK INGLRRVLDELTLARTDLEMQIEGLKEELA EMQIEGLKEELAYLKKNHEEEISTLRGQVG R T D L K K 1 0 0 1 0 1 4 1 0 1 4 2 1 0 0 0 1 0 1 0 0 0 18 1 2122.0868 CON__P08727;P08727 CON__P08727 198 215 KRT19 Keratin, type I cytoskeletal 19 yes no 3 3.729E-07 79.837 By MS/MS 5 0 1 1 0 0 0 0 + 12970 51 13636 56445 47175 47175 36 1 0 0 0 TDLEMQIEGLKEELAYLKK INGLRRVLDELTLARTDLEMQIEGLKEELA MQIEGLKEELAYLKKNHEEEISTLRGQVGG R T D K K N 1 0 0 1 0 1 4 1 0 1 4 3 1 0 0 0 1 0 1 0 0 0 19 2 2250.1817 CON__P08727;P08727 CON__P08727 198 216 KRT19 Keratin, type I cytoskeletal 19 yes no 3;4 0.0003469 75.97 By MS/MS 4.75 1.09 1 2 1 4 29613000 0 0 29613000 + 12971 51 13637 56446;56447;56448;56449 47176;47177 47176 2 0 0 4229800 TDLEMQIEGLKEELAYLR VNGLRRVLDELTLARTDLEMQIEGLKEELA EMQIEGLKEELAYLRKNHEEEMLALRGQTG R T D L R K 1 1 0 1 0 1 4 1 0 1 4 1 1 0 0 0 1 0 1 0 0 0 18 1 2150.0929 CON__P08779;P08779 CON__P08779 235 252 KRT16 Keratin, type I cytoskeletal 16 yes no 3 5.8546E-09 143.14 By MS/MS By MS/MS 4.5 2.99 1 1 1 1 1 1 2 4 32236000 1476500 0 30759000 + 12972 53 13638 56450;56451;56452;56453;56454;56455 47178;47179;47180;47181 47180 4 1149800 0 5543200 TDLLLEPYNK HIFYYLLSGAGEHLKTDLLLEPYNKYRFLS GEHLKTDLLLEPYNKYRFLSNGHVTIPGQQ K T D N K Y 0 0 1 1 0 0 1 0 0 0 3 1 0 0 1 0 1 0 1 0 0 0 10 0 1204.634 P35579 P35579 290 299 MYH9 Myosin-9 yes yes 2 0.0006342 132.9 By matching By MS/MS By MS/MS 1.8 0.98 3 2 1 2 2 281960000 3198500 237760000 41000000 12973 752 13639 56456;56457;56458;56459;56460 47182;47183;47184;47185 47182 4 3198500 115890000 8714500 TDMIQALGGVEGILEHTLFK HQRHDGKLWNLNNYRTDMIQALGGVEGILE ALGGVEGILEHTLFKGTYFPTWEGLFWEKA R T D F K G 1 0 0 1 0 1 2 3 1 2 3 1 1 1 0 0 2 0 0 1 0 0 20 0 2171.1296 Q6P2Q9 Q6P2Q9 1472 1491 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 3.1863E-13 138.87 By MS/MS 1.25 0.433 3 1 4 49367000 0 0 49367000 12974 1490 13640;13641 56461;56462;56463;56464 47186;47187;47188;47189 47188 644 4 0 0 10824000 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK YGGGSEGGRAPKRLKTDNAGDQHGGGGGGG AGGGGGGENYDDPHKTPASPVVHIRGLIDG K T D H K T 4 0 2 4 0 1 1 17 2 0 0 1 0 0 1 0 1 0 1 0 0 0 35 0 2980.1953 P14866 P14866 63 97 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 4 4.889E-11 58.429 By MS/MS By MS/MS 4.43 1.59 1 1 2 1 1 1 2 5 122430000 0 4428200 118010000 12975 565 13642 56465;56466;56467;56468;56469;56470;56471 47190;47191;47192;47193;47194;47195;47196 47195 7 0 1698900 21916000 TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIR YGGGSEGGRAPKRLKTDNAGDQHGGGGGGG DDPHKTPASPVVHIRGLIDGVVEADLVEAL K T D I R G 5 1 2 4 0 1 1 17 3 1 0 1 0 0 3 1 2 0 1 2 0 0 45 1 4037.7985 P14866 P14866 63 107 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 5 8.2536E-12 49.322 By MS/MS 3 0.816 1 1 1 3 14786000 0 14786000 0 12976 565 13643 56472;56473;56474 47197 47197 1 0 5815900 0 TDPSILGGMIVR KSFLSQGQVLKLEAKTDPSILGGMIVRIGE EAKTDPSILGGMIVRIGEKYVDMSVKTKIQ K T D V R I 0 1 0 1 0 0 0 2 0 2 1 0 1 0 1 1 1 0 0 1 0 0 12 0 1257.6751 P48047 P48047 177 188 ATP5O ATP synthase subunit O, mitochondrial yes yes 2 2.9717E-24 146.69 By MS/MS By MS/MS 7 0 3 1 2 8427700 0 7224400 1203300 12977 841 13644 56475;56476;56477 47198;47199 47199 2 0 4148300 213510 TDPTTLTDEEINR SDIQIRRLKRLGIEKTDPTTLTDEEINRFA EKTDPTTLTDEEINRFARLDIDPETITWQR K T D N R F 0 1 1 2 0 0 2 0 0 1 1 0 0 0 1 0 4 0 0 0 0 0 13 0 1503.7053 P11586 P11586 505 517 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.029005 75.416 By MS/MS 2 0 1 1 2824700 0 2824700 0 12978 528 13645 56478 47200 47200 1 0 1272000 0 TDQVIQSLIALVNDPQPEHPLR CLPVISAENWKPATKTDQVIQSLIALVNDP LIALVNDPQPEHPLRADLAEEYSNDRKKFC K T D L R A 1 1 1 2 0 3 1 0 1 2 3 0 0 0 3 1 1 0 0 2 0 0 22 0 2482.318 A0A1B0GUS4;P68036 A0A1B0GUS4 101 122 UBE2L3 Ubiquitin-conjugating enzyme E2 L3 yes no 3 1.129E-15 120.75 By matching By MS/MS 8 0 2 1 1 6534900 273240 0 6261700 12979 7 13646 56479;56480 47201 47201 1 234580 0 959980 TDRGGDSIGETPTPGASK RDTPGHGSGWAETPRTDRGGDSIGETPTPG GGDSIGETPTPGASKRKSRWDETPASQMGG R T D S K R 1 1 0 2 0 0 1 4 0 1 0 1 0 0 2 2 3 0 0 0 0 0 18 1 1744.8228 O75533 O75533 316 333 SF3B1 Splicing factor 3B subunit 1 yes yes 3 0.0010985 71.073 By MS/MS 2 0 1 1 5056000 0 5056000 0 12980 270 13647 56481 47202 47202 1 0 2276800 0 TDRYTIHSQLEHLQSK ______________________________ DRYTIHSQLEHLQSKYIGTGHADTTKWEWL M T D S K Y 0 1 0 1 0 2 1 0 2 1 2 1 0 0 0 2 2 0 1 0 0 0 16 1 1954.9861 Q9BWJ5 Q9BWJ5 2 17 SF3B5 Splicing factor 3B subunit 5 yes yes 3 1.8107E-05 103.5 By MS/MS 10 0 1 1 7132700 0 7132700 0 12981 1925 13648 56482 47203 47203 1 0 36086000 0 TDSDIIAK GFPFYDKPMRIQYAKTDSDIIAKMKGTFVE MRIQYAKTDSDIIAKMKGTFVERDRKREKR K T D A K M 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 0 0 0 8 0 861.44436 P09012 P09012 89 96 SNRPA U1 small nuclear ribonucleoprotein A yes yes 2 0.010451 93.195 By MS/MS By MS/MS 6 0 2 1 1 50017000 0 12033000 37985000 12982 481 13649 56483;56484 47204;47205 47204 2 0 4165300 5682900 TDSEIYEDAVELQQFFIK EHMFEVLERARRMNRTDSEIYEDAVELQQF EIYEDAVELQQFFIKIRDELCKNGEILLSP R T D I K I 1 0 0 2 0 2 3 0 0 2 1 1 0 2 0 1 1 0 1 1 0 0 18 0 2174.0419 Q86U86 Q86U86 857 874 PBRM1 Protein polybromo-1 yes yes 2 2.6163E-08 117.79 By MS/MS 2 0 1 1 5937700 0 0 5937700 12983 1545 13650 56485 47206 47206 1 0 0 1341800 TDSQLQGQVLFR LWTNMAISSVAEFRRTDSQLQGQVLFRHLA FRRTDSQLQGQVLFRHLAGLAELLPESRRQ R T D F R H 0 1 0 1 0 3 0 1 0 0 2 0 0 1 0 1 1 0 0 1 0 0 12 0 1390.7205 Q9NU22 Q9NU22 3130 3141 MDN1 Midasin yes yes 2 0.001542 112.11 By MS/MS 1 0 1 1 2532900 0 2532900 0 12984 2056 13651 56486 47207 47207 1 0 1238100 0 TDTESELDLISR RMFGIPVVVAVNAFKTDTESELDLISRLSR AFKTDTESELDLISRLSREHGAFDAVKCTH K T D S R L 0 1 0 2 0 0 2 0 0 1 2 0 0 0 0 2 2 0 0 0 0 0 12 0 1377.6624 P11586 P11586 761 772 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.011307 94.66 By MS/MS 2 0 1 1 8912300 0 0 8912300 12985 528 13652 56487 47208 47208 0 0 0 2014000 TDTLEDLFPTTK DALIDSMSLAKKDEKTDTLEDLFPTTKIPN DEKTDTLEDLFPTTKIPNPRFQRLFQCLLH K T D T K I 0 0 0 2 0 0 1 0 0 0 2 1 0 1 1 0 4 0 0 0 0 0 12 0 1379.682 P13010 P13010 470 481 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0017657 110.39 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 40103000 0 4362400 35740000 12986 542 13653 56488;56489;56490 47209;47210 47209 2 0 1859700 7158500 TDTYVTDNGDGTYR GNHVTARVLNPSGAKTDTYVTDNGDGTYRV KTDTYVTDNGDGTYRVQYTAYEEGVHLVEV K T D Y R V 0 1 1 3 0 0 0 2 0 0 0 0 0 0 0 0 4 0 2 1 0 0 14 0 1576.6641 Q14315 Q14315 1300 1313 FLNC Filamin-C yes yes 2 9.8984E-25 199.09 By MS/MS 1 0 1 1 7000300 0 7000300 0 12987 1298 13654 56491 47211 47211 1 0 3421600 0 TDVAVQIISNIYHNFPEQR QPGLTMVVGPPGTGKTDVAVQIISNIYHNF VQIISNIYHNFPEQRTLIVTHSNQALNQLF K T D Q R T 1 1 2 1 0 2 1 0 1 3 0 0 0 1 1 1 1 0 1 2 0 0 19 0 2243.1335 O60306 O60306 830 848 AQR Intron-binding protein aquarius yes yes 3 1.3551E-09 122.57 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 14397000 0 5228300 9169000 12988 225 13655 56492;56493;56494 47212;47213;47214 47214 3 0 2354400 2002500 TDYNASVSVPDSSGPER GAVIGKGGKNIKALRTDYNASVSVPDSSGP YNASVSVPDSSGPERILSISADIETIGEIL R T D E R I 1 1 1 2 0 0 1 1 0 0 0 0 0 0 2 4 1 0 1 2 0 0 17 0 1779.7911 P61978 P61978 70 86 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2;3 1.0184E-110 267.37 By MS/MS By MS/MS By MS/MS 3.88 1.87 2 2 3 4 1 2 2 1 6 9 732790000 41054000 98998000 592730000 12989 1002 13656 56495;56496;56497;56498;56499;56500;56501;56502;56503;56504;56505;56506;56507;56508;56509;56510 47215;47216;47217;47218;47219;47220;47221;47222;47223;47224;47225;47226;47227;47228;47229 47228 15 32029000 36178000 99368000 TDYNEPGTIPSAAR KAHNSVNKMGDRDLRTDYNEPGTIPSAARG RTDYNEPGTIPSAARGLDDTVSIASRSREV R T D A R G 2 1 1 1 0 0 1 1 0 1 0 0 0 0 2 1 2 0 1 0 0 0 14 0 1490.7001 Q96T58 Q96T58 76 89 SPEN Msx2-interacting protein yes yes 2 0.044394 61.419 By MS/MS 1 0 1 1 0 0 0 0 12990 1839 13657 56511 47230 47230 1 0 0 0 TDYTLSIANR SCYFGQLLSKLDRIKTDYTLSIANRLYGEQ LDRIKTDYTLSIANRLYGEQEFPICQEYLD K T D N R L 1 1 1 1 0 0 0 0 0 1 1 0 0 0 0 1 2 0 1 0 0 0 10 0 1152.5775 Q96P63 Q96P63 108 117 SERPINB12 Serpin B12 yes yes 2 2.4826E-30 205.36 By MS/MS By MS/MS 6.22 3.26 1 1 1 1 1 1 1 2 8 1 74360000 70877000 0 3482300 12991 1816 13658 56512;56513;56514;56515;56516;56517;56518;56519;56520 47231;47232;47233;47234;47235;47236;47237 47231 6 82952000 0 7616200 TEADAEKTFEEK SKDGKSKGIAYIEFKTEADAEKTFEEKQGT EFKTEADAEKTFEEKQGTEIDGRSISLYYT K T E E K Q 2 0 0 1 0 0 4 0 0 0 0 2 0 1 0 0 2 0 0 0 0 0 12 1 1396.6358 P19338 P19338 438 449 NCL Nucleolin yes yes 2;3 9.5874E-34 211.64 By MS/MS By matching 3.4 1.5 2 1 1 1 3 2 38025000 0 15189000 22836000 12992 604 13659 56521;56522;56523;56524;56525 47238;47239 47239 2 0 6819700 3434100 TEAESWYQTK AEVKAQYEEIANRSRTEAESWYQTKYEELQ ANRSRTEAESWYQTKYEELQQTAGRHGDDL R T E T K Y 1 0 0 0 0 1 2 0 0 0 0 1 0 0 0 1 2 1 1 0 0 0 10 0 1241.5564 CON__P13647;P13647 CON__P13647 355 364 KRT5 Keratin, type II cytoskeletal 5 no no 2 1.2646E-16 181.55 By MS/MS By MS/MS By MS/MS 5.29 3.3 3 1 3 1 2 1 1 2 3 9 4 4 481970000 413140000 7302100 61522000 + 12993 58 13660 56526;56527;56528;56529;56530;56531;56532;56533;56534;56535;56536;56537;56538;56539;56540;56541;56542 47240;47241;47242;47243;47244;47245;47246;47247;47248;47249;47250;47251;47252;47253;47254;47255;47256 47245 17 377620000 3216700 44766000 TEAESWYQTKYEELQQTAGR AEVKAQYEEIANRSRTEAESWYQTKYEELQ WYQTKYEELQQTAGRHGDDLRNTKHEISEM R T E G R H 2 1 0 0 0 3 4 1 0 0 1 1 0 0 0 1 3 1 2 0 0 0 20 1 2417.1135 CON__P13647;P13647 CON__P13647 355 374 KRT5 Keratin, type II cytoskeletal 5 no no 3 3.777E-15 159.26 By MS/MS By matching 9.5 0.5 1 1 1 1 12614000 11128000 1485700 0 + 12994 58 13661 56543;56544 47257 47257 1 6246300 7516300 0 TEALTQAFR TAIAGSEIFSLEMSKTEALTQAFRRSIGVR SLEMSKTEALTQAFRRSIGVRIKEETEIIE K T E F R R 2 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 2 0 0 0 0 0 9 0 1035.5349 Q9Y230 Q9Y230 116 124 RUVBL2 RuvB-like 2 yes yes 2 7.4516E-05 145.34 By MS/MS 4.5 0.5 1 1 2 28518000 0 0 28518000 12995 2228 13662 56545;56546 47258 47258 1 0 0 4400200 TEAVASSLYDILAR TGWLDHWGQPHSTIKTEAVASSLYDILARG KTEAVASSLYDILARGASVNLYMFIGGTNF K T E A R G 3 1 0 1 0 0 1 0 0 1 2 0 0 0 0 2 1 0 1 1 0 0 14 0 1507.7882 P16278 P16278 286 299 GLB1 Beta-galactosidase yes yes 2 4.5863E-05 160.36 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 11305000 0 3933500 7371100 12996 576 13663 56547;56548 47259;47260 47260 2 0 1305400 1429600 TEDFIIDTLELR RSFLGLTCLMQISTRTEDFIIDTLELRSDM STRTEDFIIDTLELRSDMYILNESLTDPAI R T E L R S 0 1 0 2 0 0 2 0 0 2 2 0 0 1 0 0 2 0 0 0 0 0 12 0 1463.7508 Q01780 Q01780 335 346 EXOSC10 Exosome component 10 yes yes 2 0.0066909 99.568 By MS/MS 2 0 1 1 9429400 0 0 9429400 12997 1138 13664 56549 47261 47261 1 0 0 2130900 TEDIHLFQQQVK QPQLKLKETPEPVTKTEDIHLFQQQVKEDK VTKTEDIHLFQQQVKEDKKAEKVDFRRLGE K T E V K E 0 0 0 1 0 3 1 0 1 1 1 1 0 1 0 0 1 0 0 1 0 0 12 0 1484.7623 Q5JPI3 Q5JPI3 117 128 C3orf38 Uncharacterized protein C3orf38 yes yes 2 2.5897E-58 232.75 By MS/MS 6 0 1 1 8031800 0 0 8031800 12998 1437 13665 56550 47262 47262 1 0 0 1201600 TEDPDLPAFYFDPLINPISHR VHLTWYHTPNVVFIKTEDPDLPAFYFDPLI PAFYFDPLINPISHRHSVKSQEPLPDDDEE K T E H R H 1 1 1 3 0 0 1 0 1 2 2 0 0 2 4 1 1 0 1 0 0 0 21 0 2456.2012 Q6P2Q9 Q6P2Q9 342 362 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 3.8372E-36 198.23 By MS/MS By MS/MS 1.8 1.17 3 1 1 2 3 78323000 0 5055500 73268000 12999 1490 13666 56551;56552;56553;56554;56555 47263;47264;47265 47264 3 0 2400300 15575000 TEDSLMPEEEFLR PPPPMEDEPTSKKLKTEDSLMPEEEFLRRN LKTEDSLMPEEEFLRRNKGPVSIKVQVPNM K T E L R R 0 1 0 1 0 0 4 0 0 0 2 0 1 1 1 1 1 0 0 0 0 0 13 0 1594.7185 Q15459 Q15459 687 699 SF3A1 Splicing factor 3A subunit 1 yes yes 2 1.038E-11 182.46 By MS/MS 2 0 1 1 8008300 0 0 8008300 13000 1369 13667 56556 47266 47266 1 0 0 1809700 TEDTIFLR VQEIQATFFYFTPNKTEDTIFLREYQTRQD FYFTPNKTEDTIFLREYQTRQDQCIYNTTY K T E L R E 0 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 0 0 0 8 0 993.51311 P02763;P19652 P02763 74 81 ORM1;ORM2 Alpha-1-acid glycoprotein 1;Alpha-1-acid glycoprotein 2 no no 2 6.693E-20 186.67 By MS/MS 9 0 1 1 64420000 64420000 0 0 13001 394;611 13668 56557 47267 47267 1 36159000 0 0 TEEADLLQTK TAEKYRQLKQQWEMKTEEADLLQTKLQQSS QWEMKTEEADLLQTKLQQSSYHKQQEELDA K T E T K L 1 0 0 1 0 1 2 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 10 0 1146.5768 O95347 O95347 723 732 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.066944 77.192 By matching By MS/MS 1.5 0.5 1 1 1 1 7461400 0 2026800 5434600 13002 321 13669 56558;56559 47268 47268 0 0 990650 1228100 TEEALQLYNQIIK IIHGQMAYILQLQGRTEEALQLYNQIIKLK GRTEEALQLYNQIIKLKPTDVGLLAVIANN R T E I K L 1 0 1 0 0 2 2 0 0 2 2 1 0 0 0 0 1 0 1 0 0 0 13 0 1561.8352 O76094 O76094 242 254 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.00010248 152.86 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 15169000 0 2938600 12231000 13003 296 13670 56560;56561;56562 47269;47270 47270 2 0 1252700 2301000 TEEARPSPAPGPGTPTGTPTR VETSRALAAGADSPKTEEARPSPAPGPGTP SPAPGPGTPTGTPTRTPSRTAPGALTAKPP K T E T R T 2 2 0 0 0 0 2 3 0 0 0 0 0 0 6 1 5 0 0 0 0 0 21 1 2076.0236 Q4KMP7 Q4KMP7 135 155 TBC1D10B TBC1 domain family member 10B yes yes 3 5.9721E-08 102.07 By MS/MS 2 0 1 1 2298100 0 0 2298100 13004 1419 13671 56563 47271 47271 1 0 0 519330 TEEELQAILEAK GVGEGKVMFHSFVSKTEEELQAILEAKEKK VSKTEEELQAILEAKEKKLRLKAQRQAQQA K T E A K E 2 0 0 0 0 1 4 0 0 1 2 1 0 0 0 0 1 0 0 0 0 0 12 0 1372.7086 Q9NQ55 Q9NQ55 304 315 PPAN Suppressor of SWI4 1 homolog yes yes 2 0.0066909 99.568 By matching By MS/MS 3.33 0.471 2 1 1 2 15480000 3269800 0 12210000 13005 2032 13672 56564;56565;56566 47272 47272 1 3772600 0 2127900 TEEGPTLSYGR PENLPQILLQLKRRRTEEGPTLSYGRDGRS KRRRTEEGPTLSYGRDGRSATREPPYRVPR R T E G R D 0 1 0 0 0 0 2 2 0 0 1 0 0 0 1 1 2 0 1 0 0 0 11 0 1208.5673 P43243 P43243 150 160 MATR3 Matrin-3 yes yes 2 5.9079E-07 154.35 By MS/MS By MS/MS By MS/MS 2.33 0.943 1 3 1 1 1 2 3 103700000 9709200 44712000 49280000 13006 812 13673 56567;56568;56569;56570;56571;56572 47273;47274;47275;47276 47275 4 11698000 20349000 10269000 TEELEEESFPER EGLVYAPPGKEKQRKTEELEEESFPERSKK QRKTEELEEESFPERSKKEDRGKRSEGGHR K T E E R S 0 1 0 0 0 0 6 0 0 0 1 0 0 1 1 1 1 0 0 0 0 0 12 0 1493.6522 Q9Y2W1 Q9Y2W1 487 498 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 1.2855E-17 185.61 By MS/MS 1.5 0.5 1 1 2 15737000 0 0 15737000 13007 2252 13674 56573;56574 47277;47278 47278 2 0 0 3495000 TEELNKEVASNSELVQSSR AEKNRRDAETWFLSKTEELNKEVASNSELV NKEVASNSELVQSSRSEVTELRRVLQGLEI K T E S R S 1 1 2 0 0 1 4 0 0 0 2 1 0 0 0 4 1 0 0 2 0 0 19 1 2119.0393 CON__P08779;P08779 CON__P08779 312 330 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 2.1785E-179 295.3 By MS/MS By matching By MS/MS 4.68 2.34 2 1 2 5 4 2 1 1 1 10 2 7 277820000 197720000 5440900 74660000 + 13008 53 13675 56575;56576;56577;56578;56579;56580;56581;56582;56583;56584;56585;56586;56587;56588;56589;56590;56591;56592;56593 47279;47280;47281;47282;47283;47284;47285;47286;47287;47288;47289;47290 47289 12 161800000 1539800 14412000 TEEQGIPR DYHRGLLVDRPSETKTEEQGIPRPLHPPPP DRPSETKTEEQGIPRPLHPPPPPPVQPPQH K T E P R P 0 1 0 0 0 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 0 0 8 0 928.46141 Q9UKV3 Q9UKV3 1108 1115 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.0017838 111.04 By MS/MS 3 0 1 1 5544500 0 0 5544500 13009 2184 13676 56594 47291 47291 1 0 0 1075400 TEEQGIPRPLHPPPPPPVQPPQHPR DYHRGLLVDRPSETKTEEQGIPRPLHPPPP HPPPPPPVQPPQHPRAEQREQERAVREQWA K T E P R A 0 2 0 0 0 3 2 1 2 1 1 0 0 0 11 0 1 0 0 1 0 0 25 1 2797.4776 Q9UKV3 Q9UKV3 1108 1132 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 4;5 1.7467E-05 67.979 By MS/MS By MS/MS 2.56 1.17 2 2 4 1 4 5 149920000 0 34119000 115800000 13010 2184 13677 56595;56596;56597;56598;56599;56600;56601;56602;56603 47292;47293;47294;47295;47296;47297 47295 6 0 14920000 23552000 TEESPASDEAGEK QETKEDLPAENGETKTEESPASDEAGEKEA TKTEESPASDEAGEKEAKSD__________ K T E E K E 2 0 0 1 0 0 4 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 13 0 1348.563 P05114 P05114 83 95 HMGN1 Non-histone chromosomal protein HMG-14 yes yes 2 0.0039946 103.22 By MS/MS By MS/MS 7.5 0.957 1 2 2 1 2 4 13559000 0 3133300 10426000 13011 425 13678 56604;56605;56606;56607;56608;56609 47298;47299;47300;47301;47302 47298 5 0 1568900 1737000 TEESPASDEAGEKEAK QETKEDLPAENGETKTEESPASDEAGEKEA EESPASDEAGEKEAKSD_____________ K T E A K S 3 0 0 1 0 0 5 1 0 0 0 2 0 0 1 2 1 0 0 0 0 0 16 1 1676.7377 P05114 P05114 83 98 HMGN1 Non-histone chromosomal protein HMG-14 yes yes 3 0.013604 54.281 By MS/MS By matching 7.67 0.471 1 2 2 1 2067100 0 1432300 634770 13012 425 13679 56610;56611;56612 47303;47304 47304 2 0 727130 97316 TEGDGVYTLNDKK EHSVRYQCKNYYKLRTEGDGVYTLNDKKQW LRTEGDGVYTLNDKKQWINKAVGDKLPECE R T E K K Q 0 0 1 2 0 0 1 2 0 0 1 2 0 0 0 0 2 0 1 1 0 0 13 1 1438.694 P00738;P00739 P00738 60 72 HP;HPR Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain;Haptoglobin-related protein yes no 3 0.030075 52.101 By MS/MS 9 0 1 1 7317900 7317900 0 0 13013 364 13680 56613 47305 47305 1 4107600 0 0 TEGDGVYTLNNEK EHSVRYQCKNYYKLRTEGDGVYTLNNEKQW LRTEGDGVYTLNNEKQWINKAVGDKLPECE R T E E K Q 0 0 2 1 0 0 2 2 0 0 1 1 0 0 0 0 2 0 1 1 0 0 13 0 1438.6576 P00738 P00738 119 131 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes yes 2 3.2553E-17 190.57 By MS/MS 9 0 1 1 18087000 18087000 0 0 13014 364 13681 56614 47306 47306 1 10152000 0 0 TEGDIFAIVSK YNTIETFNELFDAHKTEGDIFAIVSKAEEF DAHKTEGDIFAIVSKAEEFDQIKVREEEIE K T E S K A 1 0 0 1 0 0 1 1 0 2 0 1 0 1 0 1 1 0 0 1 0 0 11 0 1178.6183 Q8N3C0 Q8N3C0 1007 1017 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.029752 78.759 By MS/MS By matching 2 0.816 1 1 1 2 1 14156000 0 6540500 7615800 13015 1602 13682 56615;56616;56617 47307 47307 1 0 3110100 1477100 TEGLSVLSQAMAVIK IAPPRYVMTTTTLERTEGLSVLSQAMAVIK TEGLSVLSQAMAVIKEKIEEKRGVFNVQME R T E I K E 2 0 0 0 0 1 1 1 0 1 2 1 1 0 0 2 1 0 0 2 0 0 15 0 1545.8436 P05198 P05198 245 259 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2;3 1.2875E-17 191.53 By MS/MS By MS/MS By MS/MS 5.5 1.95 1 1 1 1 2 9 2 1 4 5 9 321320000 2762300 112880000 205670000 13016 428 13683;13684 56618;56619;56620;56621;56622;56623;56624;56625;56626;56627;56628;56629;56630;56631;56632;56633;56634;56635 47308;47309;47310;47311;47312;47313;47314;47315;47316;47317;47318;47319;47320;47321 47310 152 14 3053000 40021000 31213000 TEGTAHSSNTSDVDFTGASSAK ISENPTLDLPCSIGRTEGTAHSSNTSDVDF SNTSDVDFTGASSAKETTSSSISRHYGLSD R T E A K E 3 0 1 2 0 0 1 2 1 0 0 1 0 1 0 5 4 0 0 1 0 0 22 0 2168.9458 Q9Y483 Q9Y483 442 463 MTF2 Metal-response element-binding transcription factor 2 yes yes 3 4.7342E-11 101.89 By MS/MS By MS/MS 3 0 2 1 1 11386000 0 2204300 9181300 13017 2283 13685 56636;56637 47322;47323 47323 2 0 939710 1780700 TEHPFTVEEFVLPK QGSYKVVVQKKSGGRTEHPFTVEEFVLPKF RTEHPFTVEEFVLPKFEVQVTVPKIITILE R T E P K F 0 0 0 0 0 0 3 0 1 0 1 1 0 2 2 0 2 0 0 2 0 0 14 0 1671.8508 P01023 P01023 215 228 A2M Alpha-2-macroglobulin yes yes 3 0.00021844 108.59 By MS/MS 9 0 1 1 12564000 12564000 0 0 13018 370 13686 56638 47324 47324 1 7052000 0 0 TEIIILATR EDGYSGVEVRVTPTRTEIIILATRTQNVLG RVTPTRTEIIILATRTQNVLGEKGRRIREL R T E T R T 1 1 0 0 0 0 1 0 0 3 1 0 0 0 0 0 2 0 0 0 0 0 9 0 1028.623 P23396 P23396 46 54 RPS3 40S ribosomal protein S3 yes yes 2 9.9006E-32 199.29 By MS/MS By MS/MS By MS/MS 6.5 0.957 1 2 2 1 1 2 3 80202000 5166100 27202000 47834000 13019 641 13687 56639;56640;56641;56642;56643;56644 47325;47326;47327;47328;47329 47329 5 11134000 9226100 7255300 TEILPPFFK KQCCGTDGVEANYIKTEILPPFFKHFWQHR EANYIKTEILPPFFKHFWQHRMALDRRNYR K T E F K H 0 0 0 0 0 0 1 0 0 1 1 1 0 2 2 0 1 0 0 0 0 0 9 0 1090.6063 O75533 O75533 808 816 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.030774 77.058 By matching By MS/MS By MS/MS 1.83 0.687 2 3 1 1 2 3 62308000 2403600 18395000 41509000 13020 270 13688 56645;56646;56647;56648;56649;56650 47330;47331;47332;47333 47331 4 2896100 8400900 9185500 TEIMSPLYQDEAPK QQKQQLPQTPPSCLKTEIMSPLYQDEAPKG KTEIMSPLYQDEAPKGTEASSGTEAATGLE K T E P K G 1 0 0 1 0 1 2 0 0 1 1 1 1 0 2 1 1 0 1 0 0 0 14 0 1620.7705 Q8IY81 Q8IY81 580 593 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 0.00029148 149.96 By MS/MS By MS/MS 2.8 1.47 1 2 1 1 1 4 52307000 0 11979000 40328000 13021 1590 13689 56651;56652;56653;56654;56655 47334;47335;47336 47335 3 0 5394500 7858100 TEINLVSFR GEEDEEGQKVTIHDKTEINLVSFRRTIYLA VTIHDKTEINLVSFRRTIYLAIQSSLDFEE K T E F R R 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 9 0 1077.5819 Q9HCG8 Q9HCG8 448 456 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 2 0.00022136 140.63 By MS/MS 2 0 1 1 7440000 0 0 7440000 13022 2012 13690 56656 47337 47337 1 0 0 1681300 TEISDKITSELVSK EPDDGSNDVVDLLPRTEISDKITSELVSKI RTEISDKITSELVSKIGDKNWKIRKEGLDE R T E S K I 0 0 0 1 0 0 2 0 0 2 1 2 0 0 0 3 2 0 0 1 0 0 14 1 1548.8247 Q14008 Q14008 855 868 CKAP5 Cytoskeleton-associated protein 5 yes yes 2;3 1.5949E-33 214 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 48488000 0 14339000 34150000 13023 1279 13691 56657;56658;56659;56660;56661 47338;47339;47340;47341 47340 4 0 6820400 7358100 TEISEMNR QSLAGKHGDDLRRTKTEISEMNRNISRLQA DDLRRTKTEISEMNRNISRLQAEIEGLKGQ K T E N R N 0 1 1 0 0 0 2 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 8 0 978.44404 CON__P05787;P05787;CON__Q9H552 CON__P05787 305 312 KRT8 Keratin, type II cytoskeletal 8 yes no 2 3.7161E-09 170.73 By matching By MS/MS By MS/MS 3.73 1.86 2 1 2 2 2 1 1 1 5 5 255790000 3144900 24886000 227760000 + 13024 49 13692 56662;56663;56664;56665;56666;56667;56668;56669;56670;56671;56672 47342;47343;47344;47345;47346;47347;47348;47349;47350 47343 9 3144900 8010100 38490000 TEISIVDMFGAPYTVDR T E D R 1 1 0 2 0 0 1 1 0 2 0 0 1 1 1 1 2 0 1 2 0 0 17 0 1912.9241 REV__P22090 yes yes 2 0.032391 57.348 By MS/MS 1 0 1 1 49620000 0 49620000 0 + 13025 2328 13693 56673 47351 47351 746 1 0 24253000 0 TEITELRR NREVATNTEALQSSRTEITELRRSVQNLEI EALQSSRTEITELRRSVQNLEIELQSQLSM R T E R R S 0 2 0 0 0 0 2 0 0 1 1 0 0 0 0 0 2 0 0 0 0 0 8 1 1016.5615 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;CON__Q6IFX2;CON__P08730-1 CON__Q6IFX2 308 315 KRT13 Keratin, type I cytoskeletal 13 no no 2 2.1691E-13 178.87 By MS/MS 1 0 1 1 44719000 44719000 0 0 + 13026 91;57;548;52 13694 56674 47352 47352 1 44719000 0 0 TEIVFTGEKEQLAQAVAR ETGTRINIPPPSVNRTEIVFTGEKEQLAQA VFTGEKEQLAQAVARIKKIYEEKKKKTTTI R T E A R I 3 1 0 0 0 2 3 1 0 1 1 1 0 1 0 0 2 0 0 2 0 0 18 1 1989.0531 Q00341 Q00341 266 283 HDLBP Vigilin yes yes 3 3.6398E-07 110.12 By MS/MS 2 0 1 1 5407700 0 5407700 0 13027 1122 13695 56675 47353 47353 1 0 2435200 0 TELAEPIAIRPTSETVMYPAYAK ADFAPEVAWVTRSGKTELAEPIAIRPTSET IRPTSETVMYPAYAKWVQSHRDLPIKLNQW K T E A K W 4 1 0 0 0 0 3 0 0 2 1 1 1 0 3 1 3 0 2 1 0 0 23 1 2550.304 P07814 P07814 1110 1132 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 3 0.00065964 61.862 By MS/MS 1.5 0.5 1 1 2 11881000 0 0 11881000 13028 465 13696 56676;56677 47354 47354 1 0 0 2605400 TELEDTLDSTAAQQELR EKQKRDLGEELEALKTELEDTLDSTAAQQE LEDTLDSTAAQQELRSKREQEVNILKKTLE K T E L R S 2 1 0 2 0 2 3 0 0 0 3 0 0 0 0 1 3 0 0 0 0 0 17 0 1918.912 P35579 P35579 1146 1162 MYH9 Myosin-9 yes yes 2;3 0 350.72 By MS/MS 1 0 2 2 50288000 0 50288000 0 13029 752 13697 56678;56679 47355;47356 47355 2 0 24580000 0 TELEDTLDTTAAQQELR EKQKRDLSEELEALKTELEDTLDTTAAQQE LEDTLDTTAAQQELRTKREQEVAELKKALE K T E L R T 2 1 0 2 0 2 3 0 0 0 3 0 0 0 0 0 4 0 0 0 0 0 17 0 1932.9276 P35580 P35580 1153 1169 MYH10 Myosin-10 yes yes 2 3.0428E-110 260.81 By MS/MS 1 0 2 2 12411000 0 12411000 0 13030 753 13698 56680;56681 47357;47358 47357 2 0 6066300 0 TELGLDLGLEPK ARLREMLSVGLGFLRTELGLDLGLEPKRYP FLRTELGLDLGLEPKRYPGWVILVGTGALG R T E P K R 0 0 0 1 0 0 2 2 0 0 4 1 0 0 1 0 1 0 0 0 0 0 12 0 1283.6973 Q86UE4 Q86UE4 34 45 MTDH Protein LYRIC yes yes 2 0.038523 76.143 By MS/MS By MS/MS 3 0 2 1 1 10842000 0 1927300 8915000 13031 1546 13699 56682;56683 47359;47360 47359 2 0 821590 1729100 TELHGQLISVEK SSSTEVSRCIAHLHRTELHGQLISVEKVKG LHRTELHGQLISVEKVKGDPSKKEMKKEND R T E E K V 0 0 0 0 0 1 2 1 1 1 2 1 0 0 0 1 1 0 0 1 0 0 12 0 1352.73 Q9NWH9 Q9NWH9 448 459 SLTM SAFB-like transcription modulator yes yes 2;3 0.0048915 93.839 By MS/MS 1.5 0.5 1 1 2 39003000 0 0 39003000 13032 2078 13700 56684;56685 47361;47362 47362 1 0 0 8730000 TELRPGETLNVNFLLR TVGNSNNYLHLSVLRTELRPGETLNVNFLL ELRPGETLNVNFLLRMDRAHEAKIRYYTYL R T E L R M 0 2 2 0 0 0 2 1 0 0 4 0 0 1 1 0 2 0 0 1 0 0 16 1 1871.0265 P01024 P01024 463 478 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 3.3993E-13 178.23 By MS/MS 9 0 1 1 5957000 5957000 0 0 13033 371 13701 56686 47363 47363 1 3343700 0 0 TELSQSDMFDQR VNVAGLVLAGSADFKTELSQSDMFDQRLQS DFKTELSQSDMFDQRLQSKVLKLVDISYGG K T E Q R L 0 1 0 2 0 2 1 0 0 0 1 0 1 1 0 2 1 0 0 0 0 0 12 0 1455.63 P62495 P62495 234 245 ETF1 Eukaryotic peptide chain release factor subunit 1 yes yes 2 8.6432E-16 128.03 By MS/MS 5 0 1 1 0 0 0 0 13034 1028 13702 56687 47364 47364 1 0 0 0 TEMDWVLK ESMGHRYIEVFKSHRTEMDWVLKHSGPNSA EVFKSHRTEMDWVLKHSGPNSADSANDGFV R T E L K H 0 0 0 1 0 0 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 8 0 1020.495 P52597 P52597 91 98 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2 0.045284 74.127 By matching By MS/MS By MS/MS 4.67 1.76 2 2 2 1 2 1 5 3 127600000 2227400 34424000 90949000 13035 910 13703 56688;56689;56690;56691;56692;56693;56694;56695;56696 47365;47366;47367;47368 47365 4 2683800 9901000 13533000 TEMEDLMSSK MEQKAELERLNKQFRTEMEDLMSSKDDVGK NKQFRTEMEDLMSSKDDVGKSVHELEKSKR R T E S K D 0 0 0 1 0 0 2 0 0 0 1 1 2 0 0 2 1 0 0 0 0 0 10 0 1169.4944 P35579 P35579 1504 1513 MYH9 Myosin-9 yes yes 2 0.019213 83.456 By MS/MS By matching 1.5 0.5 1 1 1 1 77759000 0 75851000 1908100 13036 752 13704 56697;56698 47369 47369 1 0 37075000 431190 TEMEDLMSSKDDVGK MEQKAELERLNKQFRTEMEDLMSSKDDVGK TEMEDLMSSKDDVGKSVHELEKSKRALEQQ R T E G K S 0 0 0 3 0 0 2 1 0 0 1 2 2 0 0 2 1 0 0 1 0 0 15 1 1683.7332 P35579 P35579 1504 1518 MYH9 Myosin-9 yes yes 2;3 3.2331E-72 243.11 By MS/MS By MS/MS 1.3 0.458 7 3 8 2 253110000 0 222910000 30206000 13037 752 13705;13706;13707 56699;56700;56701;56702;56703;56704;56705;56706;56707;56708 47370;47371;47372;47373;47374;47375;47376;47377;47378 47376 361;362 9 0 108790000 6538000 TEMENEFVLIK VEDFKNKYEDEINKRTEMENEFVLIKKDVD INKRTEMENEFVLIKKDVDEAYMNKVELES R T E I K K 0 0 1 0 0 0 3 0 0 1 1 1 1 1 0 0 1 0 0 1 0 0 11 0 1351.6694 CON__P05787;P05787;CON__H-INV:HIT000016045 CON__P05787 187 197 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00036488 128.6 By MS/MS By MS/MS By MS/MS 3.08 1.21 2 2 3 5 1 1 6 6 1278700000 28776000 118630000 1131300000 + 13038 49 13708;13709 56709;56710;56711;56712;56713;56714;56715;56716;56717;56718;56719;56720;56721 47379;47380;47381;47382;47383;47384;47385;47386;47387;47388;47389;47390;47391 47391 34 13 22450000 38270000 188820000 TEMENEFVLIKK VEDFKNKYEDEINKRTEMENEFVLIKKDVD NKRTEMENEFVLIKKDVDEAYMNKVELESR R T E K K D 0 0 1 0 0 0 3 0 0 1 1 2 1 1 0 0 1 0 0 1 0 0 12 1 1479.7643 CON__P05787;P05787;CON__H-INV:HIT000016045 CON__P05787 187 198 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 0.00022395 137.69 By MS/MS By MS/MS 4.9 0.943 4 4 1 1 4 6 251330000 0 72217000 179110000 + 13039 49 13710 56722;56723;56724;56725;56726;56727;56728;56729;56730;56731 47392;47393;47394;47395;47396;47397;47398;47399 47397 8 0 22547000 28637000 TEMPCQALVR ACMEEFQKAVELMDRTEMPCQALVRMLAKK ELMDRTEMPCQALVRMLAKKPGWKETNFQV R T E V R M 1 1 0 0 1 1 1 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 10 0 1203.574 Q14008 Q14008 633 642 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.0089882 89.296 By MS/MS 1 0 1 1 20016000 0 0 20016000 13040 1279 13711 56732 47400 47400 1 0 0 4312700 TEMQDNTYPEILR RPGKCFRLYTEKAYKTEMQDNTYPEILRSN YKTEMQDNTYPEILRSNLGSVVLQLKKLGI K T E L R S 0 1 1 1 0 1 2 0 0 1 1 0 1 0 1 0 2 0 1 0 0 0 13 0 1608.7454 O43143 O43143 492 504 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 1.9175E-11 180.07 By matching By MS/MS By MS/MS 3 1.15 3 1 1 1 1 1 4 45519000 10029000 4319900 31170000 13041 186 13712 56733;56734;56735;56736;56737;56738 47401;47402;47403;47404;47405 47403 5 12084000 1945300 5961700 TEMSEVLTEILR LTDKVTDLLGGLFSKTEMSEVLTEILRVDP FSKTEMSEVLTEILRVDPAFDKDRFLKQCE K T E L R V 0 1 0 0 0 0 3 0 0 1 2 0 1 0 0 1 2 0 0 1 0 0 12 0 1419.7279 O43615 O43615 294 305 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 2 0.010021 94.297 By MS/MS 5 0 1 1 2078700 2078700 0 0 13042 203 13713 56739 47406 47406 1 1665300 0 0 TEMVTISDASQR VLPQIICCSEPPVVKTEMVTISDASQRTEI VVKTEMVTISDASQRTEISTKEVPIVQTET K T E Q R T 1 1 0 1 0 1 1 0 0 1 0 0 1 0 0 2 2 0 0 1 0 0 12 0 1336.6293 O43491 O43491 875 886 EPB41L2 Band 4.1-like protein 2 yes yes 2 0.017909 81.865 By MS/MS 2 0 1 1 0 0 0 0 13043 199 13714 56740 47407 47407 1 0 0 0 TENSTSAPAAKPK ______________________________ ______________________________ M T E P K R 3 0 1 0 0 0 1 0 0 0 0 2 0 0 2 2 2 0 0 0 0 0 13 1 1300.6623 P07305 P07305 2 14 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0052025 84.658 By MS/MS 6 0 1 1 1538600 0 1538600 0 13044 457 13715 56741 47408 47408 1 0 532600 0 TEPATGFIDGDLIESFLDISRPK KIEHSFWRSFHTERKTEPATGFIDGDLIES DGDLIESFLDISRPKMQEVVANLQYDDGSG K T E P K M 1 1 0 3 0 0 2 2 0 3 2 1 0 2 2 2 2 0 0 0 0 0 23 1 2520.2748 Q16531 Q16531 1082 1104 DDB1 DNA damage-binding protein 1 yes yes 3 0.011121 58.627 By MS/MS 2 0.816 1 1 1 3 8839400 0 0 8839400 13045 1387 13716 56742;56743;56744 47409 47409 0 0 0 1898100 TEPTAQQNLALQLAEK MASLDQPTQTVVMHRTEPTAQQNLALQLAE EPTAQQNLALQLAEKLGSLVENNERVFDHK R T E E K L 3 0 1 0 0 3 2 0 0 0 3 1 0 0 1 0 2 0 0 0 0 0 16 0 1753.921 Q99613;B5ME19 Q99613 847 862 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein yes no 2 3.2939E-05 131.26 By MS/MS 2 0 1 1 4106100 0 4106100 0 13046 21 13717 56745 47410 47410 1 0 1849000 0 TEQCLVALLHK VYNCRGSHVLSCMVKTEQCLVALLHKHLPG CMVKTEQCLVALLHKHLPGHPYVRRKRKKF K T E H K H 1 0 0 0 1 1 1 0 1 0 3 1 0 0 0 0 1 0 0 1 0 0 11 0 1310.7017 Q9UIG0 Q9UIG0 1432 1442 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.025177 51.841 By MS/MS 1 0 1 1 0 0 0 0 13047 2164 13718 56746 47411 47411 1 0 0 0 TEQEEDEELLSESR EKQSLISAGDYRHRRTEQEEDEELLSESRK RTEQEEDEELLSESRKTSNVCIRFEVSPSY R T E S R K 0 1 0 1 0 1 6 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 14 0 1692.7326 P28370 P28370 149 162 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 0.0002379 151.1 By MS/MS 2 0 1 1 12283000 0 0 12283000 13048 693 13719 56747 47412 47412 1 0 0 2775800 TEQEEDEELLTESSK EKQNLLSVGDYRHRRTEQEEDEELLTESSK TEQEEDEELLTESSKATNVCTRFEDSPSYV R T E S K A 0 0 0 1 0 1 6 0 0 0 2 1 0 0 0 2 2 0 0 0 0 0 15 0 1765.7741 O60264 O60264 146 160 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 9.0842E-35 214.04 By MS/MS 1.5 0.5 1 1 2 39416000 0 0 39416000 13049 223 13720 56748;56749 47413;47414 47414 2 0 0 8826600 TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR FQDNHEDGPTAKKLKTEQGGAHFSVSSLAE SVTSVGSVNPAENFRVLVKQKKASFEEASN K T E F R V 3 1 2 0 0 1 3 4 1 0 1 0 0 2 1 6 2 0 0 4 0 0 31 0 3120.4748 P13010 P13010 569 599 XRCC5 X-ray repair cross-complementing protein 5 yes yes 3 4.8771E-75 198.28 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 27069000 0 9087500 17981000 13050 542 13721 56750;56751;56752 47415;47416;47417 47417 3 0 3985100 3487500 TEQMTLR ______________________________ ______________________________ M T E L R G 0 1 0 0 0 1 1 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 7 0 877.43275 P63244 P63244 2 8 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 6.9477E-23 154.11 By MS/MS 6 0 1 1 0 0 0 0 13051 1068 13722 56753 47418 47418 1 0 0 0 TERPDWQNVMLYVTAIYK SVGIKSTLDINEMVRTERPDWQNVMLYVTA PDWQNVMLYVTAIYKYFET___________ R T E Y K Y 1 1 1 1 0 1 1 0 0 1 1 1 1 0 1 0 2 1 2 2 0 0 18 1 2226.1143 Q69YQ0 Q69YQ0 1096 1113 SPECC1L Cytospin-A yes yes 3 2.8325E-05 99.021 By MS/MS 2 0 1 1 1289500 0 0 1289500 13052 1469 13723 56754 47419 47419 1 0 0 291400 TESSPSEASQHSMQSPQK QPPGTSVPIVKNIAKTESSPSEASQHSMQS SPSEASQHSMQSPQKTTLILPTQQVRRSSR K T E Q K T 1 0 0 0 0 3 2 0 1 0 0 1 1 0 2 6 1 0 0 0 0 0 18 0 1944.8483 Q9UQR0 Q9UQR0 253 270 SCML2 Sex comb on midleg-like protein 2 yes yes 3 0.010297 49.463 By MS/MS 3 0 1 1 2916200 0 0 2916200 13053 2224 13724 56755 47420 47420 1 0 0 565600 TESSSAQQVAVSR QLNSTKKPPKKANEKTESSSAQQVAVSRLS EKTESSSAQQVAVSRLSASSSSSDSSSSSS K T E S R L 2 1 0 0 0 2 1 0 0 0 0 0 0 0 0 4 1 0 0 2 0 0 13 0 1348.6583 P25440 P25440 761 773 BRD2 Bromodomain-containing protein 2 yes yes 2 0.00071217 118.28 By MS/MS 2 0 1 1 1301900 0 0 1301900 13054 658 13725 56756 47421 47421 1 0 0 294200 TETDSVGTPQSNGGMR WNSDSTLNSRQLEPRTETDSVGTPQSNGGM ETDSVGTPQSNGGMRLHDFVSKTVIKPESC R T E M R L 0 1 1 1 0 1 1 3 0 0 0 0 1 0 1 2 3 0 0 1 0 0 16 0 1635.7159 Q9H0H5 Q9H0H5 270 285 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 0.00011968 101.71 By MS/MS 3 0 1 1 1732800 0 0 1732800 13055 1963 13726 56757 47422 47422 1 0 0 336090 TETQNALKEEEER GRKKIRKILKDDKLRTETQNALKEEEERRK LRTETQNALKEEEERRKRIAEREREREKLR R T E E R R 1 1 1 0 0 1 5 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 13 1 1575.7376 P46100 P46100 1491 1503 ATRX Transcriptional regulator ATRX yes yes 2 4.5395E-16 186.24 By MS/MS 1 0 1 1 3633700 0 0 3633700 13056 825 13727 56758 47423 47423 1 0 0 782930 TEVLMENFR CPMVGSEVYSTEIKKTEVLMENFRRAIGLR STEIKKTEVLMENFRRAIGLRIKETKEVYE K T E F R R 0 1 1 0 0 0 2 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 9 0 1137.5488 Q9Y265 Q9Y265 109 117 RUVBL1 RuvB-like 1 yes yes 2 0.00030389 110.12 By MS/MS 4 0 1 1 0 0 0 0 13057 2234 13728 56759 47424 47424 1 0 0 0 TEVNGFDPLFNAITGLNGSGK IKSIILEGFKSYAQRTEVNGFDPLFNAITG DPLFNAITGLNGSGKSNILDSICFLLGISN R T E G K S 1 0 3 1 0 0 1 4 0 1 2 1 0 2 1 1 2 0 0 1 0 0 21 0 2150.0644 O95347 O95347 18 38 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 6.5751E-14 150.05 By MS/MS 2 0 1 1 2284600 0 2284600 0 13058 321 13729 56760 47425 47425 1 0 1028800 0 TEVSSNHVLIYLDK KPTVKMLERSNHVSRTEVSSNHVLIYLDKV RTEVSSNHVLIYLDKVSNQTLSLFFTVLQD R T E D K V 0 0 1 1 0 0 1 0 1 1 2 1 0 0 0 2 1 0 1 2 0 0 14 0 1616.841 P01023 P01023 1408 1421 A2M Alpha-2-macroglobulin yes yes 2 0.00043846 121.28 By MS/MS 9 0 1 1 2786700 2786700 0 0 13059 370 13730 56761 47426 47426 1 1564200 0 0 TEWETAAPAVAETPDIK ______________________________ WETAAPAVAETPDIKLFGKWSTDDVQINDI M T E I K L 4 0 0 1 0 0 3 0 0 1 0 1 0 0 2 0 3 1 0 1 0 0 17 0 1827.8891 P46782 P46782 2 18 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 3.8193E-06 138.42 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 260420000 0 17476000 242950000 13060 832 13731 56762;56763;56764 47427;47428;47429 47428 3 0 9894900 43110000 TEYMAFPKPFESSSSIGAEKPR PSEQQQPLAQNSSGKTEYMAFPKPFESSSS KPFESSSSIGAEKPRNKKLPEEEVESSRTP K T E P R N 2 1 0 0 0 0 3 1 0 1 0 2 1 2 3 4 1 0 1 0 0 0 22 2 2458.1839 Q15154 Q15154 1174 1195 PCM1 Pericentriolar material 1 protein yes yes 3 3.184E-19 122.3 By MS/MS 1.5 0.5 1 1 2 10585000 0 0 10585000 13061 1349 13732 56765;56766 47430 47430 1 0 0 2324100 TFANSSYLAQHIR SHTETKPHKCPHCSKTFANSSYLAQHIRIH SKTFANSSYLAQHIRIHSGAKPYSCNFCEK K T F I R I 2 1 1 0 0 1 0 0 1 1 1 0 0 1 0 2 1 0 1 0 0 0 13 0 1506.7579 Q8TF68 Q8TF68 264 276 ZNF384 Zinc finger protein 384 yes yes 2;3 5.7429E-05 157.34 By MS/MS By MS/MS 4 0.756 2 3 2 2 5 69342000 0 12634000 56708000 13062 1669 13733 56767;56768;56769;56770;56771;56772;56773 47431;47432;47433;47434;47435 47434 5 0 4192700 9707500 TFAPEEISAMVLTK TKPYIQVDIGGGQTKTFAPEEISAMVLTKM KTFAPEEISAMVLTKMKETAEAYLGKKVTH K T F T K M 2 0 0 0 0 0 2 0 0 1 1 1 1 1 1 1 2 0 0 1 0 0 14 0 1535.7905 P11021 P11021 139 152 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.00042857 122.7 By matching By MS/MS By MS/MS 2.8 0.4 1 4 1 2 2 59686000 3624600 14383000 41678000 13063 516 13734 56774;56775;56776;56777;56778 47436;47437;47438;47439 47436 4 4181900 6131600 8205400 TFAQDGQHQVLSMNR HFHIMEAMLYALLNKTFAQDGQHQVLSMNR TFAQDGQHQVLSMNRNAVGKHFELMIGDSR K T F N R N 1 1 1 1 0 3 0 1 1 0 1 0 1 1 0 1 1 0 0 1 0 0 15 0 1730.8159 Q96QE5 Q96QE5 264 278 TEFM Transcription elongation factor, mitochondrial yes yes 3 0.0025633 73.156 By MS/MS By matching 6 0 2 1 1 13795000 0 2915100 10880000 13064 1826 13735 56779;56780 47440 47440 1 0 1009100 1627800 TFAQGLAVAGDVVSK RKLKLQVTRAFVAARTFAQGLAVAGDVVSK TFAQGLAVAGDVVSKVSVVNPTAQCTHALL R T F S K V 3 0 0 1 0 1 0 2 0 0 1 1 0 1 0 1 1 0 0 3 0 0 15 0 1461.7827 O75487 O75487 220 234 GPC4 Glypican-4;Secreted glypican-4 yes yes 2 0.010094 76.357 By matching By MS/MS 6 0 2 1 1 15039000 1403800 0 13636000 13065 265 13736 56781;56782 47441 47441 1 1869100 0 2040000 TFATYGYALDPSLDNHQVSAK EPAHINDFMFEQQRRTFATYGYALDPSLDN YALDPSLDNHQVSAKYIGSVEEAEKNQGLT R T F A K Y 3 0 1 2 0 1 0 1 1 0 2 1 0 1 1 2 2 0 2 1 0 0 21 0 2297.0964 O60508 O60508 131 151 CDC40 Pre-mRNA-processing factor 17 yes yes 3 3.8683E-06 86.539 By MS/MS 3.5 0.5 1 1 2 17118000 0 17118000 0 13066 228 13737 56783;56784 47442 47442 1 0 6876800 0 TFDPYIIIR LDLIEGSMTVCTTKKTFDPYIIIRARDLIK VCTTKKTFDPYIIIRARDLIKLLARSVSFE K T F I R A 0 1 0 1 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 0 9 0 1136.623 Q13601 Q13601 107 115 KRR1 KRR1 small subunit processome component homolog yes yes 2 2.9513E-05 150.17 By matching By MS/MS By MS/MS 3.86 1.55 1 2 1 2 1 2 2 3 39165000 3024700 12862000 23278000 13067 1261 13738 56785;56786;56787;56788;56789;56790;56791 47443;47444;47445 47445 3 3227300 3576500 3386200 TFDQLTPDESKER FQYDHEAFLGKEDSKTFDQLTPDESKERLG SKTFDQLTPDESKERLGKIVDRIDNDGDGF K T F E R L 0 1 0 2 0 1 2 0 0 0 1 1 0 1 1 1 2 0 0 0 0 0 13 1 1564.7369 Q15293 Q15293 71 83 RCN1 Reticulocalbin-1 yes yes 2;3 0.0013914 112.13 By MS/MS 5.5 0.5 2 2 4 110480000 0 0 110480000 13068 1354 13739 56792;56793;56794;56795 47446;47447 47447 2 0 0 15705000 TFDYKIPYTTVLR YDIRIYPTFLHLHGKTFDYKIPYTTVLRLF GKTFDYKIPYTTVLRLFLLPHKDQRQMFFV K T F L R L 0 1 0 1 0 0 0 0 0 1 1 1 0 1 1 0 3 0 2 1 0 0 13 1 1615.861 Q08945 Q08945 229 241 SSRP1 FACT complex subunit SSRP1 yes yes 3 0.054371 46.408 By MS/MS 2.5 0.5 1 1 2 5307300 0 5307300 0 13069 1186 13740 56796;56797 47448 47448 1 0 2335500 0 TFEEKQGTEIDGR GIAYIEFKTEADAEKTFEEKQGTEIDGRSI EKTFEEKQGTEIDGRSISLYYTGEKGQNQD K T F G R S 0 1 0 1 0 1 3 2 0 1 0 1 0 1 0 0 2 0 0 0 0 0 13 1 1508.7107 P19338 P19338 445 457 NCL Nucleolin yes yes 3 0.0085918 72.705 By MS/MS 2 0 1 1 5322700 0 5322700 0 13070 604 13741 56798 47449 47449 1 0 2396900 0 TFEEYLDEYYR AAVGQEKPVFEPGDKTFEEYLDEYYRLDYE PGDKTFEEYLDEYYRLDYEDIIDDLPCRFK K T F Y R L 0 1 0 1 0 0 3 0 0 0 1 0 0 1 0 0 1 0 3 0 0 0 11 0 1526.6565 Q8N9T8 Q8N9T8 499 509 KRI1 Protein KRI1 homolog yes yes 2 2.2378E-19 191.85 By MS/MS 2 0 1 1 5738200 0 0 5738200 13071 1619 13742 56799 47450 47450 1 0 0 1296700 TFEGHDASVLK GTIKLWALQDFSCLKTFEGHDASVLKVAFV SCLKTFEGHDASVLKVAFVSRGTQLLSSGS K T F L K V 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1202.5932 Q12788 Q12788 558 568 TBL3 Transducin beta-like protein 3 yes yes 2 0.025272 81.263 By MS/MS 3 0 1 1 7470400 0 0 7470400 13072 1197 13743 56800 47451 47451 1 0 0 1448900 TFEGNLTTKPINGAIFIFNPR WFVDDTNVYRVTIHKTFEGNLTTKPINGAI TTKPINGAIFIFNPRTGQLFLKIIHTSVWA K T F P R T 1 1 3 0 0 0 1 2 0 3 1 1 0 3 2 0 3 0 0 0 0 0 21 1 2349.2481 Q6P2Q9 Q6P2Q9 1793 1813 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.022981 56.936 By MS/MS 1 0 1 1 7286800 0 0 7286800 13073 1490 13744 56801 47452 47452 0 0 0 1570100 TFEISEPVITPSQR GIIALSYRDWEEIVKTFEISEPVITPSQRQ KTFEISEPVITPSQRQQKPSA_________ K T F Q R Q 0 1 0 0 0 1 2 0 0 2 0 0 0 1 2 2 2 0 0 1 0 0 14 0 1602.8253 Q9NXX6 Q9NXX6 366 379 NSMCE4A Non-structural maintenance of chromosomes element 4 homolog A yes yes 2 0.0012945 107.85 By MS/MS 5 0 1 1 3633000 0 3633000 0 13074 2092 13745 56802 47453 47453 1 0 936480 0 TFFEELAVEDK DKVVKKGKKDKKIKKTFFEELAVEDKQAGE KIKKTFFEELAVEDKQAGEEEKVLKEKEQQ K T F D K Q 1 0 0 1 0 0 3 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 11 0 1326.6343 Q8NE71 Q8NE71 40 50 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 0.0021162 108.67 By MS/MS 2 0 1 1 19268000 0 0 19268000 13075 1638 13746 56803 47454 47454 1 0 0 4354200 TFGVSPLR CSAPCSTSYCCLAPRTFGVSPLRRWIQRPQ YCCLAPRTFGVSPLRRWIQRPQNCNTGSSG R T F L R R 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 8 0 875.4865 Q5T750 Q5T750 177 184 XP32 Skin-specific protein 32 yes yes 2 0.00020546 139.31 By MS/MS By matching By MS/MS 4.92 3.25 3 1 2 1 2 1 1 2 6 1 6 96426000 65508000 1286000 29632000 13076 1454 13747 56804;56805;56806;56807;56808;56809;56810;56811;56812;56813;56814;56815;56816 47455;47456;47457;47458;47459;47460 47459 6 68868000 628570 13461000 TFHIFYQLLSGAGEHLK LLEKSRAVRQAKDERTFHIFYQLLSGAGEH HIFYQLLSGAGEHLKSDLLLEGFNNYRFLS R T F L K S 1 0 0 0 0 1 1 2 2 1 3 1 0 2 0 1 1 0 1 0 0 0 17 0 1960.0207 P35580 P35580 280 296 MYH10 Myosin-10 yes yes 3;4 0.00092186 75.018 By MS/MS 1 0 2 2 14726000 0 0 14726000 13077 753 13748 56817;56818 47461;47462 47461 2 0 0 3173000 TFITQQGIK LDFGYPQNSETGALKTFITQQGIKSQHQTK ETGALKTFITQQGIKSQHQTKEEQSQITSQ K T F I K S 0 0 0 0 0 2 0 1 0 2 0 1 0 1 0 0 2 0 0 0 0 0 9 0 1034.576 Q96CW1 Q96CW1 131 139 AP2M1 AP-2 complex subunit mu yes yes 2 0.0093301 89.296 By MS/MS 4 0 1 1 10487000 0 0 10487000 13078 1762 13749 56819 47463 47463 1 0 0 1712800 TFLALINQVFPAEEDSKK GPDSLTIEPLNQKGKTFLALINQVFPAEED ALINQVFPAEEDSKKDVEDNCSLMYLNEAT K T F K K D 2 0 1 1 0 1 2 0 0 1 2 2 0 2 1 1 1 0 0 1 0 0 18 1 2049.0783 Q9UM54 Q9UM54 40 57 MYO6 Unconventional myosin-VI yes yes 3 0.045005 32.627 By MS/MS 2 0 1 1 3668800 0 0 3668800 13079 2198 13750 56820 47464 47464 1 0 0 829070 TFLAQHASL LVPDSVKKELLQRIRTFLAQHASL______ LLQRIRTFLAQHASL_______________ R T F S L - 2 0 0 0 0 1 0 0 1 0 2 0 0 1 0 1 1 0 0 0 0 0 9 0 986.51853 Q9NPA8 Q9NPA8 93 101 ENY2 Transcription and mRNA export factor ENY2 yes yes 2 0.0071517 93.195 By MS/MS 10 0 1 1 36132000 0 36132000 0 13080 2024 13751 56821 47465 47465 1 0 182800000 0 TFLFSATMTK TEVDKILKVIPRDRKTFLFSATMTKKVQKL PRDRKTFLFSATMTKKVQKLQRAALKNPVK K T F T K K 1 0 0 0 0 0 0 0 0 0 1 1 1 2 0 1 3 0 0 0 0 0 10 0 1145.5791 Q9H0S4 Q9H0S4 201 210 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.0035874 101.65 By MS/MS 5 0 1 1 5812700 0 5812700 0 13081 1964 13752 56822 47466 47466 1 0 1498300 0 TFLQTVSSEK RVQFCPFEKNVESTRTFLQTVSSEKVRSTN VESTRTFLQTVSSEKVRSTNLNCSVIADVR R T F E K V 0 0 0 0 0 1 1 0 0 0 1 1 0 1 0 2 2 0 0 1 0 0 10 0 1138.587 Q96EL3 Q96EL3 32 41 MRPL53 39S ribosomal protein L53, mitochondrial yes yes 2 0.0014824 108.98 By MS/MS 9.5 0.5 1 1 2 6211300 0 6211300 0 13082 1774 13753 56823;56824 47467 47467 1 0 20226000 0 TFLVGER VRRILGLLDAYLKTRTFLVGERVTLADITV LDAYLKTRTFLVGERVTLADITVVCTLLWL R T F E R V 0 1 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 7 0 820.4443 P26641 P26641 150 156 EEF1G Elongation factor 1-gamma yes yes 2 0.031954 90.986 By MS/MS By MS/MS 7 2.24 1 2 1 1 1 2 3 5 75440000 0 9295200 66145000 13083 674 13754 56825;56826;56827;56828;56829;56830;56831;56832 47468;47469;47470;47471 47470 4 0 8429200 19876000 TFNEPGSPIVK SSLMWEVRYIEHNTRTFNEPGSPIVKSAKF HNTRTFNEPGSPIVKSAKFVTDLLLHFIKD R T F V K S 0 0 1 0 0 0 1 1 0 1 0 1 0 1 2 1 1 0 0 1 0 0 11 0 1187.6186 Q8WWQ0 Q8WWQ0 1237 1247 PHIP PH-interacting protein yes yes 2 0.0065358 97.965 By MS/MS 1 0 1 1 11732000 0 0 11732000 13084 1690 13755 56833 47472 47472 1 0 0 2527800 TFNLPLLMLGGGGYTIR NLTVKGHAKCVEVVKTFNLPLLMLGGGGYT NLPLLMLGGGGYTIRNVARCWTYETAVALD K T F I R N 0 1 1 0 0 0 0 4 0 1 4 0 1 1 1 0 2 0 1 0 0 0 17 0 1821.9811 Q92769 Q92769 291 307 HDAC2 Histone deacetylase 2 yes yes 2;3 4.2913E-09 167.32 By MS/MS By MS/MS 3.86 0.639 2 4 1 3 4 35538000 0 9188200 26350000 13085 1721 13756;13757 56834;56835;56836;56837;56838;56839;56840 47473;47474;47475;47476;47477;47478 47474 659 6 0 2930500 4601500 TFNPGAGLPTDK KRGAQLAKDIARRSKTFNPGAGLPTDKKKG RSKTFNPGAGLPTDKKKGGPSPGDVEAIKN K T F D K K 1 0 1 1 0 0 0 2 0 0 1 1 0 1 2 0 2 0 0 0 0 0 12 0 1216.6088 P09661 P09661 180 191 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 0.021298 83.883 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 87485000 0 37179000 50306000 13086 491 13758 56841;56842;56843;56844 47479;47480 47479 2 0 20173000 8419600 TFNPGAGLPTDKK KRGAQLAKDIARRSKTFNPGAGLPTDKKKG SKTFNPGAGLPTDKKKGGPSPGDVEAIKNA K T F K K K 1 0 1 1 0 0 0 2 0 0 1 2 0 1 2 0 2 0 0 0 0 0 13 1 1344.7038 P09661 P09661 180 192 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2;3 0.0012457 118.28 By MS/MS By MS/MS 7 0 3 1 2 32864000 0 10092000 22771000 13087 491 13759 56845;56846;56847 47481;47482 47481 2 0 5795000 4040600 TFNQVEIKPEMIGHYLGEFSITYKPVK LPEMVGSMVGVYNGKTFNQVEIKPEMIGHY GHYLGEFSITYKPVKHGRPGIGATHSSRFI K T F V K H 0 0 1 0 0 1 3 2 1 3 1 3 1 2 2 1 2 0 2 2 0 0 27 2 3167.6365 P62841 P62841 101 127 RPS15 40S ribosomal protein S15 yes yes 3;4;5 2.301E-26 114.57 By MS/MS 8 0 3 3 146070000 0 0 146070000 13088 1037 13760 56848;56849;56850 47483;47484;47485;47486;47487 47487 5 0 0 22394000 TFNTSTGGLLLPSDTK KLYRETNEPVKTKTRTFNTSTGGLLLPSDT FNTSTGGLLLPSDTKRSQIYGSRQIILEKE R T F T K R 0 0 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 16 0 1650.8465 P12956 P12956 302 317 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 5.733E-05 143.86 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 124590000 4186000 47368000 73040000 13089 541 13761 56851;56852;56853;56854 47488;47489;47490 47488 3 4829700 20193000 14059000 TFNTSTGGLLLPSDTKR KLYRETNEPVKTKTRTFNTSTGGLLLPSDT NTSTGGLLLPSDTKRSQIYGSRQIILEKEE R T F K R S 0 1 1 1 0 0 0 2 0 0 3 1 0 1 1 2 4 0 0 0 0 0 17 1 1806.9476 P12956 P12956 302 318 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3 7.3409E-92 252.14 By MS/MS By MS/MS 3.62 0.857 5 1 2 4 4 303140000 0 153260000 149880000 13090 541 13762 56855;56856;56857;56858;56859;56860;56861;56862 47491;47492;47493;47494;47495;47496;47497 47491 7 0 64613000 28695000 TFPVLLR EGGQGAPPMYQLYKRTFPVLLRLACDVDQV PMYQLYKRTFPVLLRLACDVDQVTRQLYEP R T F L R L 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 7 0 844.51707 P78527 P78527 965 971 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.03565 87.627 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 20801000 1410600 4044200 15346000 13091 1089 13763 56863;56864;56865;56866 47498;47499 47498 2 1410600 1976700 3321800 TFQGHTNEVNAIK MCIHVCKLGQDRPIKTFQGHTNEVNAIKWD IKTFQGHTNEVNAIKWDPTGNLLASCSDDM K T F I K W 1 0 2 0 0 1 1 1 1 1 0 1 0 1 0 0 2 0 0 1 0 0 13 0 1457.7263 Q9BZK7;Q9BQ87;O60907 Q9BZK7 344 356 TBL1XR1;TBL1Y;TBL1X F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1Y;F-box-like/WD repeat-containing protein TBL1X yes no 3 0.06872 37.013 By MS/MS 4 0 1 1 6476100 0 0 6476100 13092 1945 13764 56867 47500 47500 1 0 0 1057800 TFSEILNR DLEVRSLETCMYDHKTFSEILNRVQKAVDD TCMYDHKTFSEILNRVQKAVDDLNLHSYSN K T F N R V 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 1 1 0 0 0 0 0 8 0 978.51345 Q14204 Q14204 873 880 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0010881 120.65 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 5758100 922880 3481200 1354000 13093 1292 13765 56868;56869;56870 47501 47501 1 922880 1701600 305980 TFSFAIPLIEK SGKDLIAQARTGTGKTFSFAIPLIEKLHGE GTGKTFSFAIPLIEKLHGELQDRKRGRAPQ K T F E K L 1 0 0 0 0 0 1 0 0 2 1 1 0 2 1 1 1 0 0 0 0 0 11 0 1264.7067 Q9NR30 Q9NR30 237 247 DDX21 Nucleolar RNA helicase 2 yes yes 2 0.0039218 104.05 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 120540000 0 47531000 73014000 13094 2038 13766 56871;56872;56873;56874 47502;47503;47504 47502 3 0 21404000 15168000 TFSFAIPLIER EGKDLIAQARTGTGKTFSFAIPLIERLQRN GTGKTFSFAIPLIERLQRNQETIKKSRSPK K T F E R L 1 1 0 0 0 0 1 0 0 2 1 0 0 2 1 1 1 0 0 0 0 0 11 0 1292.7129 Q9BQ39 Q9BQ39 188 198 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.00094014 114.97 By matching By MS/MS By MS/MS 2.6 0.49 2 3 1 2 2 33048000 936990 13960000 18151000 13095 1876 13767 56875;56876;56877;56878;56879 47505;47506;47507;47508 47508 4 1081100 6160600 3592500 TFSHELSDFGLESTAGEIPVVAIR LDAGHKLNFAVASRKTFSHELSDFGLESTA GLESTAGEIPVVAIRTAKGEKFVMQEEFSR K T F I R T 2 1 0 1 0 0 3 2 1 2 2 0 0 2 1 3 2 0 0 2 0 0 24 0 2574.2966 P30101 P30101 306 329 PDIA3 Protein disulfide-isomerase A3 yes yes 3 2.6695E-22 153.19 By MS/MS 3.5 0.5 1 1 2 26125000 0 0 26125000 13096 711 13768 56880;56881 47509 47509 1 0 0 4380000 TFSQSSHLVQHR THTGERPNACADCGKTFSQSSHLVQHRRIH CGKTFSQSSHLVQHRRIHTGEKPYACLECG K T F H R R 0 1 0 0 0 2 0 0 2 0 1 0 0 1 0 3 1 0 0 1 0 0 12 0 1425.7113 Q6DD87 Q6DD87 102 113 ZNF787 Zinc finger protein 787 yes yes 3 0.029725 55.261 By MS/MS 5 0 1 1 2163100 0 2163100 0 13097 1470 13769 56882 47510 47510 1 0 557580 0 TFSVWYVPEVTGTHK HQEEAKVTANNDKNRTFSVWYVPEVTGTHK TFSVWYVPEVTGTHKVTVLFAGQHIAKSPF R T F H K V 0 0 0 0 0 0 1 1 1 0 0 1 0 1 1 1 3 1 1 3 0 0 15 0 1749.8726 P21333 P21333 341 355 FLNA Filamin-A yes yes 3 0.00091086 83.633 By matching By MS/MS 1 0 2 1 1 13594000 543760 0 13050000 13098 623 13770 56883;56884 47511 47511 1 543760 0 2811900 TFSWASVTSK PAPADIAQTVQEDLRTFSWASVTSKNLPPS QEDLRTFSWASVTSKNLPPSGAVPVTGIPP R T F S K N 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 3 2 1 0 1 0 0 10 0 1112.5502 Q13283 Q13283 248 257 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2 0.00054205 134.77 By MS/MS 5 1 1 1 2 85146000 0 85146000 0 13099 1236 13771 56885;56886 47512;47513 47512 2 0 28358000 0 TFTDHVMLFTQTK REGDREAIVAALLTRTFTDHVMLFTQTKKQ TRTFTDHVMLFTQTKKQAHRMHILLGLMGL R T F T K K 0 0 0 1 0 1 0 0 1 0 1 1 1 2 0 0 4 0 0 1 0 0 13 0 1567.7705 Q96GQ7 Q96GQ7 461 473 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2;3 5.9809E-45 222.34 By MS/MS 2.33 0.471 2 1 3 25108000 0 0 25108000 13100 1793 13772 56887;56888;56889 47514;47515;47516 47515 3 0 0 5673900 TFTTQETITNAETAK ATLNPESSLFIIASKTFTTQETITNAETAK TFTTQETITNAETAKEWFLLSAKDPSAVAK K T F A K E 2 0 1 0 0 1 2 0 0 1 0 1 0 1 0 0 6 0 0 0 0 0 15 0 1654.805 CON__Q3ZBD7;P06744 CON__Q3ZBD7 212 226 GPI Glucose-6-phosphate isomerase yes no 2 0.00039014 116.01 By MS/MS 4 0 1 1 14287000 0 0 14287000 + 13101 87 13773 56890 47517 47517 1 0 0 2333600 TFVAQMTVFDK ELPARRKRNREDGEKTFVAQMTVFDKNRRL DGEKTFVAQMTVFDKNRRLQLLDGEYEVAM K T F D K N 1 0 0 1 0 1 0 0 0 0 0 1 1 2 0 0 2 0 0 2 0 0 11 0 1285.6377 Q15022 Q15022 294 304 SUZ12 Polycomb protein SUZ12 yes yes 2 0.028709 81.865 By MS/MS 2 0 1 1 0 0 0 0 13102 1333 13774 56891 47518 47518 1 0 0 0 TFVNITPAEVGILVGK GYKDSPSVWAAVPGKTFVNITPAEVGILVG FVNITPAEVGILVGKDRSSFFVNGLTLGGQ K T F G K D 1 0 1 0 0 0 1 2 0 2 1 1 0 1 1 0 2 0 0 3 0 0 16 0 1656.9451 CON__P02584 CON__P02584 39 54 yes yes 2 0.0057125 78.903 By MS/MS By MS/MS 9.5 0.5 2 2 2 2 12925000 3103500 0 9821500 + 13103 38 13775 56892;56893;56894;56895 47519;47520 47519 2 2394800 0 3483700 TFVNITPAEVGVLVGK GYKDSPSVWAAVPGKTFVNITPAEVGVLVG FVNITPAEVGVLVGKDRSSFYVNGLTLGGQ K T F G K D 1 0 1 0 0 0 1 2 0 1 1 1 0 1 1 0 2 0 0 4 0 0 16 0 1642.9294 P07737 P07737 39 54 PFN1 Profilin-1 yes yes 2 2.7987E-17 113.24 By MS/MS By MS/MS 8.67 0.471 1 2 1 2 70682000 16754000 0 53928000 13104 463 13776 56896;56897;56898 47521;47522;47523 47522 3 9404200 0 17227000 TFVQELER HNYTQDRLQRLFHERTFVQELERYKEENIE QRLFHERTFVQELERYKEENIELAFDDLEP R T F E R Y 0 1 0 0 0 1 2 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 8 0 1020.524 Q92614 Q92614 827 834 MYO18A Unconventional myosin-XVIIIa yes yes 2 0.0061359 98.458 By MS/MS 1 0 1 1 4495300 0 4495300 0 13105 1710 13777 56899 47524 47524 1 0 2197200 0 TFYEDEMASHLDSK MVERIQFVCSLCKYRTFYEDEMASHLDSKF RTFYEDEMASHLDSKFHKEHFKYVGTKLPK R T F S K F 1 0 0 2 0 0 2 0 1 0 1 1 1 1 0 2 1 0 1 0 0 0 14 0 1671.7087 Q9ULX6 Q9ULX6 398 411 AKAP8L A-kinase anchor protein 8-like yes yes 2 0.006041 86.911 By MS/MS 2 0 1 1 4097100 0 0 4097100 13106 2195 13778 56900 47525 47525 1 0 0 925870 TGAAPIIDVVR TLVSEQTRVNAAKNKTGAAPIIDVVRSGYY AKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ K T G V R S 2 1 0 1 0 0 0 1 0 2 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1110.6397 P46776 P46776 95 105 RPL27A 60S ribosomal protein L27a yes yes 2 4.4191E-05 145.84 By MS/MS By MS/MS 5.73 2.77 1 1 1 1 2 2 1 1 1 8 3 671060000 0 346420000 324640000 13107 827 13779 56901;56902;56903;56904;56905;56906;56907;56908;56909;56910;56911 47526;47527;47528;47529;47530;47531 47526 6 0 193500000 100040000 TGADTTAAGPLFQQRPYPSPGAVLR RGTWSTGLPKRNEAKTGADTTAAGPLFQQR LFQQRPYPSPGAVLRANAEASRTKQQD___ K T G L R A 4 2 0 1 0 2 0 3 0 0 2 0 0 1 4 1 3 0 1 1 0 0 25 1 2570.3241 O60828 O60828 229 253 PQBP1 Polyglutamine-binding protein 1 yes yes 3 8.3113E-20 115.55 By MS/MS By MS/MS 6 0 2 1 1 19909000 0 10114000 9795100 13108 234 13780 56912;56913 47532;47533;47534 47533 3 0 3501200 1465400 TGAFALPILNALLETPQR QGRDIIGLAETGSGKTGAFALPILNALLET FALPILNALLETPQRLFALVLTPTRELAFQ K T G Q R L 3 1 1 0 0 1 1 1 0 1 4 0 0 1 2 0 2 0 0 0 0 0 18 0 1924.0782 Q9H0S4 Q9H0S4 75 92 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2;3 5.0043E-09 117.3 By MS/MS By MS/MS By MS/MS 3.8 0.872 1 2 5 2 1 5 4 32925000 878660 15347000 16699000 13109 1964 13781 56914;56915;56916;56917;56918;56919;56920;56921;56922;56923 47535;47536;47537;47538;47539;47540;47541;47542 47542 8 685510 4165900 2787300 TGAFSIPVIQIVYETLK GGGDVLMAAETGSGKTGAFSIPVIQIVYET AFSIPVIQIVYETLKDQQEGKKGKTTIKTG K T G L K D 1 0 0 0 0 1 1 1 0 3 1 1 0 1 1 1 2 0 1 2 0 0 17 0 1878.0503 Q92499 Q92499 53 69 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2;3 0.0010482 93.206 By MS/MS 2.8 0.748 2 2 1 5 37630000 0 0 37630000 13110 1705 13782 56924;56925;56926;56927;56928 47543;47544;47545 47545 3 0 0 7639000 TGAFSIPVIQIVYETLKDQQEGK GGGDVLMAAETGSGKTGAFSIPVIQIVYET IQIVYETLKDQQEGKKGKTTIKTGASVLNK K T G G K K 1 0 0 1 0 3 2 2 0 3 1 2 0 1 1 1 2 0 1 2 0 0 23 1 2563.3534 Q92499 Q92499 53 75 DDX1 ATP-dependent RNA helicase DDX1 yes yes 3 0.00029087 66.137 By MS/MS 2.5 0.5 1 1 2 17868000 0 0 17868000 13111 1705 13783 56929;56930 47546 47546 1 0 0 3658800 TGAIVDVPVGEELLGR FGNDKLIKEGDIVKRTGAIVDVPVGEELLG GAIVDVPVGEELLGRVVDALGNAIDGKGPI R T G G R V 1 1 0 1 0 0 2 3 0 1 2 0 0 0 1 0 1 0 0 3 0 0 16 0 1623.8832 P25705 P25705 134 149 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 1.9392E-12 176.05 By MS/MS By MS/MS By MS/MS 4 0 3 1 1 1 29004000 3026600 7102100 18875000 13112 661 13784 56931;56932;56933 47547;47548;47549 47549 3 2361300 2356900 3082900 TGAPQYGSYGTAPVNLNIK DDDEDDVHVTIGDIKTGAPQYGSYGTAPVN QYGSYGTAPVNLNIKTGGRVYGTTGTKVKG K T G I K T 2 0 2 0 0 1 0 3 0 1 1 1 0 0 2 1 2 0 2 1 0 0 19 0 1949.9847 Q6UN15 Q6UN15 105 123 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 yes yes 2 1.0319E-51 217.91 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 2 1 51108000 22050000 15709000 13349000 13113 1503 13785 56934;56935;56936;56937 47550;47551;47552 47552 3 25440000 6322800 2589000 TGAQELLR AAYLWVGTGASEAEKTGAQELLRVLRAQPV GASEAEKTGAQELLRVLRAQPVQVAEGSEP K T G L R V 1 1 0 0 0 1 1 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 886.48723 P06396 P06396 616 623 GSN Gelsolin yes yes 2 0.0056944 98.997 By MS/MS 9.5 0.5 1 1 2 4644700 4644700 0 0 13114 440 13786 56938;56939 47553 47553 1 6187000 0 0 TGDTGMLPANYVEAI VQQIDDGWMYGTVERTGDTGMLPANYVEAI TGDTGMLPANYVEAI_______________ R T G A I - 2 0 1 1 0 0 1 2 0 1 1 0 1 0 1 0 2 0 1 1 0 0 15 0 1550.7287 Q14847 Q14847 247 261 LASP1 LIM and SH3 domain protein 1 yes yes 2 0.00058009 106.2 By MS/MS By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 24127000 4110000 2135100 17882000 13115 1322 13787 56940;56941;56942;56943 47554;47555;47556 47556 3 5472600 739090 2731900 TGEAIVDAALSALR FGSNKNRPEDYQGGRTGEAIVDAALSALRQ RTGEAIVDAALSALRQLVKDRLGGRSGGYS R T G L R Q 4 1 0 1 0 0 1 1 0 1 2 0 0 0 0 1 1 0 0 1 0 0 14 0 1385.7514 Q15084 Q15084 119 132 PDIA6 Protein disulfide-isomerase A6 yes yes 2 0.00065064 116.55 By MS/MS By MS/MS By MS/MS 4.2 0.748 1 2 2 1 3 1 6886100 2561500 2442700 1881800 13116 1344 13788 56944;56945;56946;56947;56948 47557;47558;47559 47559 3 2052100 692370 307370 TGEEIFGTIGMRPNAK WKQTVFYMEDYLTVKTGEEIFGTIGMRPNA GEEIFGTIGMRPNAKNNRDLDFTIDLDFKG K T G A K N 1 1 1 0 0 0 2 3 0 2 0 1 1 1 1 0 2 0 0 0 0 0 16 1 1719.8614 Q99873 Q99873 327 342 PRMT1 Protein arginine N-methyltransferase 1 yes yes 3 0.00047712 89.624 By MS/MS 6 0 1 1 3941600 0 3941600 0 13117 1868 13789 56949 47560 47560 1 0 1364500 0 TGEMSGPVFTDSGIHIILR GQMQKPFEDASFALRTGEMSGPVFTDSGIH SGPVFTDSGIHIILRTE_____________ R T G L R T 0 1 0 1 0 0 1 3 1 3 1 0 1 1 1 2 2 0 0 1 0 0 19 0 2029.0303 Q13526 Q13526 143 161 PIN1 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 yes yes 2;3 1.5535E-12 168.76 By matching By MS/MS By MS/MS 8 0 4 1 1 2 25890000 949720 3805800 21134000 13118 1256 13790 56950;56951;56952;56953 47561;47562;47563 47563 3 815360 1731500 3240100 TGENVEDAFLEAAK FAEENGLLFLEASAKTGENVEDAFLEAAKK KTGENVEDAFLEAAKKIYQNIQDGSLDLNA K T G A K K 3 0 1 1 0 0 3 1 0 0 1 1 0 1 0 0 1 0 0 1 0 0 14 0 1492.7046 P61106 P61106 157 170 RAB14 Ras-related protein Rab-14 yes yes 2 0.0012945 107.85 By MS/MS 7 0 1 1 10097000 0 0 10097000 13119 979 13791 56954 47564 47564 1 0 0 1791700 TGFINLDKPSNPSSHEVVAWIR CGSNPLKREIGDYIRTGFINLDKPSNPSSH KPSNPSSHEVVAWIRRILRVEKTGHSGTLD R T G I R R 1 1 2 1 0 0 1 1 1 2 1 1 0 1 2 3 1 1 0 2 0 0 22 1 2466.2656 O60832 O60832 89 110 DKC1 H/ACA ribonucleoprotein complex subunit 4 yes yes 2;3;4 3.6309E-77 236.43 By matching By MS/MS By MS/MS 3.56 0.497 4 5 1 3 5 182140000 2931300 43636000 135570000 13120 235 13792 56955;56956;56957;56958;56959;56960;56961;56962;56963 47565;47566;47567;47568;47569;47570;47571 47570 7 3382100 14888000 23143000 TGFQAVTGK QCETCHSRCSVASIKTGFQAVTGKRAQLRA SVASIKTGFQAVTGKRAQLRAKAN______ K T G G K R 1 0 0 0 0 1 0 2 0 0 0 1 0 1 0 0 2 0 0 1 0 0 9 0 907.47633 P20042 P20042 316 324 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 yes yes 2 0.0032004 100.76 By MS/MS By MS/MS 4.25 0.829 1 1 2 1 3 33830000 0 9247300 24583000 13121 613 13793 56964;56965;56966;56967 47572;47573 47572 2 0 2383700 3646300 TGGAFSNALSSLNVLRPGEIPDAAFIHAAR DEMDMESEKEEEKPKTGGAFSNALSSLNVL RPGEIPDAAFIHAARKKRQMARELGDFTPH K T G A R K 6 2 2 1 0 0 1 3 1 2 3 0 0 2 2 3 1 0 0 1 0 0 30 1 3051.589 Q9Y5B6 Q9Y5B6 200 229 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 4 1.614E-33 118.75 By MS/MS 2 0 1 1 6262200 0 0 6262200 13122 2295 13794 56968 47574 47574 1 0 0 1415100 TGGEHVYFAK LDDTQASRKKMEELKTGGEHVYFAKFLTSE MEELKTGGEHVYFAKFLTSEKLMDLQLSDS K T G A K F 1 0 0 0 0 0 1 2 1 0 0 1 0 1 0 0 1 0 1 1 0 0 10 0 1107.5349 Q96FV9 Q96FV9 291 300 THOC1 THO complex subunit 1 yes yes 2 0.0028953 104.06 By MS/MS 3 0 1 1 2762000 0 0 2762000 13123 1783 13795 56969 47575 47575 1 0 0 535700 TGGLEIDSDFGGFR IVAAVGLEPNVELAKTGGLEIDSDFGGFRV KTGGLEIDSDFGGFRVNAELQARSNIWVAG K T G F R V 0 1 0 2 0 0 1 4 0 1 1 0 0 2 0 1 1 0 0 0 0 0 14 0 1469.6787 O95831 O95831 409 422 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.014267 77.288 By MS/MS 3 0 1 1 3436700 0 0 3436700 13124 345 13796 56970 47576 47576 1 0 0 666550 TGGPAYGPSSDVSTASETESEKR RTYGGSYGGRGRGRRTGGPAYGPSSDVSTA SSDVSTASETESEKREEPNRAGPGDRDPPT R T G K R E 2 1 0 1 0 0 3 3 0 0 0 1 0 0 2 5 3 0 1 1 0 0 23 1 2312.0404 P51116 P51116 438 460 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 3 1.7623E-11 104.41 By matching By MS/MS 2.75 0.829 2 1 1 1 3 14156000 0 2069900 12086000 13125 888 13797 56971;56972;56973;56974 47577;47578 47578 2 0 932110 2388500 TGGPAYGPSSDVSTASETESEKREEPNR RTYGGSYGGRGRGRRTGGPAYGPSSDVSTA TASETESEKREEPNRAGPGDRDPPTRGEES R T G N R A 2 2 1 1 0 0 5 3 0 0 0 1 0 0 3 5 3 0 1 1 0 0 28 2 2937.3224 P51116 P51116 438 465 FXR2 Fragile X mental retardation syndrome-related protein 2 yes yes 4 7.0401E-22 109.97 By MS/MS 2 0 1 1 5110600 0 5110600 0 13126 888 13798 56975 47579 47579 1 0 2301400 0 TGGYLTESGYVNLQR AIDRLVNIYKNVVHKTGGYLTESGYVNLQR TGGYLTESGYVNLQRVQMIMLAVGEVEDSI K T G Q R V 0 1 1 0 0 1 1 3 0 0 2 0 0 0 0 1 2 0 2 1 0 0 15 0 1656.8107 Q9H0D6 Q9H0D6 374 388 XRN2 5-3 exoribonuclease 2 yes yes 2 0.0020265 90.913 By MS/MS 1.5 0.5 1 1 2 20346000 0 20346000 0 13127 1960 13799 56976;56977 47580 47580 1 0 9838500 0 TGIDLGTTGR ASSASSFLDSDELERTGIDLGTTGRLQLMA DELERTGIDLGTTGRLQLMARLAEGTGLQI R T G G R L 0 1 0 1 0 0 0 3 0 1 1 0 0 0 0 0 3 0 0 0 0 0 10 0 989.51417 Q14498 Q14498 347 356 RBM39 RNA-binding protein 39 yes yes 2 0.00095297 111.46 By MS/MS 4 0.816 1 1 1 3 9588000 0 9588000 0 13128 1302 13800 56978;56979;56980 47581;47582;47583 47583 3 0 2471500 0 TGIDQLVVTPISQAQAK VVDPGFVKQKVYNSKTGIDQLVVTPISQAQ IDQLVVTPISQAQAKQRAGRAGRTGPGKCY K T G A K Q 2 0 0 1 0 3 0 1 0 2 1 1 0 0 1 1 2 0 0 2 0 0 17 0 1767.9731 Q14562 Q14562 869 885 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 2.1204E-06 153.81 By matching By MS/MS By MS/MS 2 0 3 1 1 1 16957000 1523300 8657100 6776300 13129 1304 13801 56981;56982;56983 47584;47585 47584 2 1835400 3898400 1531300 TGISDVFAK FVGNLNFNKSAPELKTGISDVFAKNDLAVV SAPELKTGISDVFAKNDLAVVDVRIGMTRK K T G A K N 1 0 0 1 0 0 0 1 0 1 0 1 0 1 0 1 1 0 0 1 0 0 9 0 936.49165 P19338 P19338 325 333 NCL Nucleolin yes yes 1;2 0.0005603 135.79 By MS/MS By MS/MS 4.31 3.15 2 3 2 2 1 1 2 8 5 701310000 0 281420000 419890000 13130 604 13802 56984;56985;56986;56987;56988;56989;56990;56991;56992;56993;56994;56995;56996 47586;47587;47588;47589;47590;47591;47592;47593;47594;47595;47596 47590 11 0 119500000 86687000 TGISEEAAIEENKR NVGNEASFHGQERTKTGISEEAAIEENKRN KTGISEEAAIEENKRNDDSEADTAKLNAKE K T G K R N 2 1 1 0 0 0 4 1 0 2 0 1 0 0 0 1 1 0 0 0 0 0 14 1 1545.7635 Q5UIP0 Q5UIP0 1935 1948 RIF1 Telomere-associated protein RIF1 yes yes 2;3 0.018925 79.86 By MS/MS 1.33 0.471 2 1 3 12262000 0 0 12262000 13131 1460 13803 56997;56998;56999 47597;47598 47597 2 0 0 2677900 TGIVDISILTTGMSATSR RLHREALKQSATDPRTGIVDISILTTGMSA VDISILTTGMSATSRKRKEELAEALKKLIL R T G S R K 1 1 0 1 0 0 0 2 0 3 1 0 1 0 0 3 4 0 0 1 0 0 18 0 1821.9506 P33991 P33991 778 795 MCM4 DNA replication licensing factor MCM4 yes yes 2 0.00025462 97.69 By MS/MS 2.5 0.5 1 1 2 3328700 0 0 3328700 13132 731 13804 57000;57001 47599 47599 1 0 0 711670 TGKPLPFGTLGVHK HSMILDSEVLLIDNKTGKPLPFGTLGVHKK KTGKPLPFGTLGVHKKAAFQDANVCLFVFD K T G H K K 0 0 0 0 0 0 0 3 1 0 2 2 0 1 2 0 2 0 0 1 0 0 14 1 1450.8296 P49916 P49916 568 581 LIG3 DNA ligase 3 yes yes 3 0.024125 55.414 By MS/MS 2 0 1 1 13647000 0 0 13647000 13133 874 13805 57002 47600 47600 1 0 0 3083900 TGKPMINLYTDK GEFFKQIGIIKTNKKTGKPMINLYTDKDTG NKKTGKPMINLYTDKDTGKPKGEATVSFDD K T G D K D 0 0 1 1 0 0 0 1 0 1 1 2 1 0 1 0 2 0 1 0 0 0 12 1 1379.7119 Q92804 Q92804 266 277 TAF15 TATA-binding protein-associated factor 2N yes yes 3 0.0030362 89.231 By MS/MS By matching 3.5 0.5 1 1 1 1 17980000 0 14701000 3279600 13134 1723 13806 57003;57004 47601 47601 1 0 6266900 535670 TGLAVTVGQAK EDSSSSEESDSEEEKTGLAVTVGQAKSVGK EEEKTGLAVTVGQAKSVGKGLQVKAASVPV K T G A K S 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 0 2 0 0 2 0 0 11 0 1043.5975 Q13428 Q13428 706 716 TCOF1 Treacle protein yes yes 2 0.0090244 93.111 By MS/MS 1.5 0.5 1 1 2 26883000 0 0 26883000 13135 1247 13807 57005;57006 47602 47602 1 0 0 5885400 TGLFSATQTQEVENLVR ASINTILEFLPKQRRTGLFSATQTQEVENL LFSATQTQEVENLVRAGLRNPVRVSVKEKG R T G V R A 1 1 1 0 0 2 2 1 0 0 2 0 0 1 0 1 3 0 0 2 0 0 17 0 1891.964 Q8NHQ9 Q8NHQ9 198 214 DDX55 ATP-dependent RNA helicase DDX55 yes yes 2 1.0764E-05 111.79 By MS/MS 3 0 1 1 912150 0 912150 0 13136 1646 13808 57007 47603 47603 1 0 388850 0 TGLIDYNQLALTAR TSIFFESMPYKLNPKTGLIDYNQLALTARL KTGLIDYNQLALTARLFRPRLIIAGTSAYA K T G A R L 2 1 1 1 0 1 0 1 0 1 3 0 0 0 0 0 2 0 1 0 0 0 14 0 1547.8308 P34897 P34897 201 214 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 2 0.00042081 145.55 By matching By MS/MS By MS/MS 4.89 1.2 1 3 2 2 1 1 4 4 196560000 3949200 73852000 118760000 13137 734 13809 57008;57009;57010;57011;57012;57013;57014;57015;57016 47604;47605;47606;47607;47608;47609;47610;47611 47605 8 3081100 23639000 18820000 TGLLSGLDIMEVNPSLGK LTYREGLYITEEIYKTGLLSGLDIMEVNPS LSGLDIMEVNPSLGKTPEEVTRTVNTAVAI K T G G K T 0 0 1 1 0 0 1 3 0 1 4 1 1 0 1 2 1 0 0 1 0 0 18 0 1842.9761 P05089 P05089 267 284 ARG1 Arginase-1 yes yes 2 2.7272E-09 154.86 By MS/MS By matching By MS/MS 5.55 2.84 1 1 1 1 2 1 1 2 1 7 1 3 33782000 18270000 1762400 13750000 13138 422 13810;13811 57017;57018;57019;57020;57021;57022;57023;57024;57025;57026;57027 47612;47613;47614;47615;47616;47617;47618 47616 149 7 14554000 454300 2809900 TGLQEVEVK PKSSLSVPYVIVPLKTGLQEVEVKAAVYHH VIVPLKTGLQEVEVKAAVYHHFISDGVRKS K T G V K A 0 0 0 0 0 1 2 1 0 0 1 1 0 0 0 0 1 0 0 2 0 0 9 0 1001.5393 P01024 P01024 905 913 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.00066643 114.89 By MS/MS 9.5 0.5 1 1 2 12540000 12540000 0 0 13139 371 13812 57028;57029 47619 47619 1 8029500 0 0 TGLSSEQTVNVLAQILK PMTTKDLLKKFQTKKTGLSSEQTVNVLAQI LSSEQTVNVLAQILKRLNPERKMINDKMHF K T G L K R 1 0 1 0 0 2 1 1 0 1 3 1 0 0 0 2 2 0 0 2 0 0 17 0 1799.9993 P35269 P35269 482 498 GTF2F1 General transcription factor IIF subunit 1 yes yes 2 0.0035798 78.548 By MS/MS 3 0 1 1 5691500 0 0 5691500 13140 748 13813 57030 47620 47620 1 0 0 1103900 TGLTPLMEAASGGYAEVGR SLLLDRKANVEHRAKTGLTPLMEAASGGYA PLMEAASGGYAEVGRVLLDKGADVNAPPVP K T G G R V 3 1 0 0 0 0 2 4 0 0 2 0 1 0 1 1 2 0 1 1 0 0 19 0 1878.9146 O75179;Q8IWZ3 O75179 1284 1302 ANKRD17;ANKHD1 Ankyrin repeat domain-containing protein 17;Ankyrin repeat and KH domain-containing protein 1 yes no 2 8.1487E-06 105 By MS/MS By matching 1.5 0.5 1 1 1 1 4246300 0 1836100 2410200 13141 246 13814 57031;57032 47621 47621 1 0 897470 544660 TGLYNYYDDEKEK MVTRSYTVGVMMMHRTGLYNYYDDEKEKLQ HRTGLYNYYDDEKEKLQIVEMPLAHKLSSL R T G E K L 0 0 1 2 0 0 2 1 0 0 1 2 0 0 0 0 1 0 3 0 0 0 13 1 1636.7257 P50454 P50454 240 252 SERPINH1 Serpin H1 yes yes 2;3 0.0060302 111.86 By MS/MS 5 0 2 2 19239000 0 0 19239000 13142 879 13815 57033;57034 47622;47623 47623 2 0 0 2683500 TGNFISTSTSLPR SDDESEEDEDDLLQRTGNFISTSTSLPRGI QRTGNFISTSTSLPRGILKMKNCQHANAER R T G P R G 0 1 1 0 0 0 0 1 0 1 1 0 0 1 1 3 3 0 0 0 0 0 13 0 1379.7045 Q9Y5J1 Q9Y5J1 221 233 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 0.00032379 139.64 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 4 1 81373000 0 37335000 44038000 13143 2297 13816 57035;57036;57037;57038;57039 47624;47625;47626 47626 3 0 13310000 8541300 TGNFQVTELGR ALMLDKNNLVKYDKKTGNFQVTELGRIASH YDKKTGNFQVTELGRIASHYYITNDTVQTY K T G G R I 0 1 1 0 0 1 1 2 0 0 1 0 0 1 0 0 2 0 0 1 0 0 11 0 1220.6149 O75643 O75643 976 986 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 6.5039E-06 152.27 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 119160000 7066900 53023000 59072000 13144 277 13817 57040;57041;57042;57043 47627;47628 47627 2 7066900 25757000 12728000 TGPNLHGLFGR KCSQCHTVEKGGKHKTGPNLHGLFGRKTGQ GKHKTGPNLHGLFGRKTGQAPGYSYTAANK K T G G R K 0 1 1 0 0 0 0 3 1 0 2 0 0 1 1 0 1 0 0 0 0 0 11 0 1167.6149 P99999;CON__P62894 P99999 29 39 CYCS Cytochrome c yes no 2 0.002729 107.1 By MS/MS By MS/MS 8.67 0.471 1 2 1 2 18269000 0 1784300 16484000 13145 1119 13818 57044;57045;57046 47629;47630 47630 2 0 1428800 4827100 TGQAPGYSYTAANK KHKTGPNLHGLFGRKTGQAPGYSYTAANKN KTGQAPGYSYTAANKNKGIIWGEDTLMEYL K T G N K N 3 0 1 0 0 1 0 2 0 0 0 1 0 0 1 1 2 0 2 0 0 0 14 0 1427.6681 P99999 P99999 41 54 CYCS Cytochrome c yes yes 2 0.010257 80.69 By MS/MS 9 0 1 1 3608400 0 0 3608400 13146 1119 13819 57047 47631 47631 1 0 0 1152700 TGQLFLK TTKPINGAIFIFNPRTGQLFLKIIHTSVWA AIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ R T G L K I 0 0 0 0 0 1 0 1 0 0 2 1 0 1 0 0 1 0 0 0 0 0 7 0 805.46979 Q6P2Q9 Q6P2Q9 1814 1820 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.071548 72.138 By MS/MS 1 0 1 1 15164000 0 0 15164000 13147 1490 13820 57048 47632 47632 1 0 0 3267400 TGQPMIHIYLDKETGKPK ADFFKQCGVVKMNKRTGQPMIHIYLDKETG PMIHIYLDKETGKPKGDATVSYEDPPTAKA R T G P K G 0 0 0 1 0 1 1 2 1 2 1 3 1 0 2 0 2 0 1 0 0 0 18 2 2055.0823 Q01844 Q01844 393 410 EWSR1 RNA-binding protein EWS yes yes 4;5 0.00029118 87.16 By MS/MS By matching 3.67 1.11 1 2 1 2 5 1 81329000 0 71922000 9406900 13148 1141 13821 57049;57050;57051;57052;57053;57054 47633;47634;47635;47636;47637 47633 5 0 25633000 1312100 TGQPMINLYTDR ADYFKQIGIIKTNKKTGQPMINLYTDRETG NKKTGQPMINLYTDRETGKLKGEATVSFDD K T G D R E 0 1 1 1 0 1 0 1 0 1 1 0 1 0 1 0 2 0 1 0 0 0 12 0 1407.6816 P35637 P35637 317 328 FUS RNA-binding protein FUS yes yes 2 6.6038E-05 142.94 By matching By MS/MS By MS/MS 3.58 1.19 2 5 2 2 1 1 5 6 271540000 11378000 97797000 162370000 13149 756 13822;13823 57055;57056;57057;57058;57059;57060;57061;57062;57063;57064;57065;57066 47638;47639;47640;47641;47642;47643;47644;47645;47646;47647;47648;47649 47646 12 13128000 36069000 30373000 TGQPMINLYTDRETGK ADYFKQIGIIKTNKKTGQPMINLYTDRETG GQPMINLYTDRETGKLKGEATVSFDDPPSA K T G G K L 0 1 1 1 0 1 1 2 0 1 1 1 1 0 1 0 3 0 1 0 0 0 16 1 1822.8883 P35637 P35637 317 332 FUS RNA-binding protein FUS yes yes 3 1.0972E-05 114.27 By MS/MS 4 2 1 1 1 1 1 1 1 7 57312000 0 57312000 0 13150 756 13824 57067;57068;57069;57070;57071;57072;57073 47650;47651;47652;47653 47653 4 0 21730000 0 TGSAVAPVHPPNR RLLLLESVSGLLQPRTGSAVAPVHPPNRSA PRTGSAVAPVHPPNRSAPHLPGLMCLLRLH R T G N R S 2 1 1 0 0 0 0 1 1 0 0 0 0 0 3 1 1 0 0 2 0 0 13 0 1301.684 Q8IZL8 Q8IZL8 49 61 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 0.016137 56.205 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 18837000 0 0 18837000 13151 1596 13825 57074;57075;57076 47654;47655;47656 47654 3 0 0 4121200 TGSENDFVVLKK VEDYKSKYEDEINKRTGSENDFVVLKKDVD NKRTGSENDFVVLKKDVDAAYVSKVDLESR R T G K K D 0 0 1 1 0 0 1 1 0 0 1 2 0 1 0 1 1 0 0 2 0 0 12 1 1335.7034 CON__Q7Z794;Q7Z794 CON__Q7Z794 262 273 KRT77 Keratin, type II cytoskeletal 1b yes no 3 0.071017 34.768 By MS/MS 9 0.816 1 1 1 3 14593000 14593000 0 0 + 13152 95 13826 57077;57078;57079 47657 47657 1 13978000 0 0 TGSETPQAPMSGVGPVSGGPGGFGR PQGPPSQMGSPMGSRTGSETPQAPMSGVGP SGVGPVSGGPGGFGRGSQGGNFEGPNKRRR R T G G R G 1 1 0 0 0 1 1 8 0 0 0 0 1 1 4 3 2 0 0 2 0 0 25 0 2286.0699 Q8WXF1 Q8WXF1 483 507 PSPC1 Paraspeckle component 1 yes yes 2;3 1.4021E-37 183.76 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 16753000 0 0 16753000 13153 1695 13827 57080;57081;57082 47658;47659;47660 47659 3 0 0 3249400 TGSGLNSFYDQR LQPALLVHWAECLQKTGSGLNSFYDQREYI LQKTGSGLNSFYDQREYIGRSVHYWKKVLP K T G Q R E 0 1 1 1 0 1 0 2 0 0 1 0 0 1 0 2 1 0 1 0 0 0 12 0 1343.6106 P49792 P49792 585 596 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.0339E-05 157.78 By MS/MS 1.5 0.5 1 1 2 20832000 0 0 20832000 13154 871 13828 57083;57084 47661 47661 1 0 0 4566500 TGSQYDIQDAIDK TGSDGSTRVVLVDRKTGSQYDIQDAIDKGL RKTGSQYDIQDAIDKGLVDRKFFDQYRSGS K T G D K G 1 0 0 3 0 2 0 1 0 2 0 1 0 0 0 1 1 0 1 0 0 0 13 0 1452.6733 P15924 P15924 2524 2536 DSP Desmoplakin yes yes 2 0.00030294 137.01 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 30783000 0 9979700 20803000 13155 572 13829 57085;57086;57087 47662;47663 47663 2 0 4877900 4502100 TGTAEMSSILEER IAARNFHASNTHLQKTGTAEMSSILEERIL QKTGTAEMSSILEERILGADTSVDLEETGR K T G E R I 1 1 0 0 0 0 3 1 0 1 1 0 1 0 0 2 2 0 0 0 0 0 13 0 1422.6661 P25705 P25705 46 58 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.014923 83.045 By matching By MS/MS 4 0 2 1 1 5202200 2142500 3059800 0 13156 661 13830 57088;57089 47664 47664 1 1671500 1015400 0 TGTAYTFFTPNNIK EDYIHRIGRTARSTKTGTAYTFFTPNNIKQ KTGTAYTFFTPNNIKQVSDLISVLREANQA K T G I K Q 1 0 2 0 0 0 0 1 0 1 0 1 0 2 1 0 4 0 1 0 0 0 14 0 1573.7777 P17844 P17844 438 451 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 4.3884E-34 210.27 By MS/MS By MS/MS By MS/MS 3.6 1.91 1 2 3 2 2 1 4 5 301000000 11402000 171210000 118390000 13157 588 13831 57090;57091;57092;57093;57094;57095;57096;57097;57098;57099 47665;47666;47667;47668;47669;47670;47671 47668 7 13156000 63524000 22454000 TGTITTFEHAHNMR GNIVGLVGVDQFLVKTGTITTFEHAHNMRV KTGTITTFEHAHNMRVMKFSVSPVVRVAVE K T G M R V 1 1 1 0 0 0 1 1 2 1 0 0 1 1 0 0 4 0 0 0 0 0 14 0 1614.7573 P13639 P13639 482 495 EEF2 Elongation factor 2 yes yes 2;3;4 9.0897E-05 123.79 By matching By MS/MS By MS/MS 2.86 1.85 3 6 1 1 1 1 1 2 2 10 103650000 2116800 21936000 79598000 13158 547 13832 57100;57101;57102;57103;57104;57105;57106;57107;57108;57109;57110;57111;57112;57113 47672;47673;47674;47675;47676;47677;47678 47675 6 2391300 9878300 16373000 TGTLQPWNSDSTLNSR STIETVPYWTRSRRKTGTLQPWNSDSTLNS GTLQPWNSDSTLNSRQLEPRTETDSVGTPQ K T G S R Q 0 1 2 1 0 1 0 1 0 0 2 0 0 0 1 3 3 1 0 0 0 0 16 0 1775.8438 Q9H0H5 Q9H0H5 249 264 RACGAP1 Rac GTPase-activating protein 1 yes yes 2 2.0874E-18 187.44 By matching By MS/MS By MS/MS 2.5 0.5 2 2 1 1 2 23991000 2782900 9400100 11808000 13159 1963 13833 57114;57115;57116;57117 47679;47680 47680 2 3353000 4007300 2347400 TGTLVEEAFWIDK VRPFTLGQLKELLGRTGTLVEEAFWIDKIK GRTGTLVEEAFWIDKIKSHCFVTYSTVEEA R T G D K I 1 0 0 1 0 0 2 1 0 1 1 1 0 1 0 0 2 1 0 1 0 0 13 0 1507.7559 Q9UKV3 Q9UKV3 1035 1047 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 0.002932 106.16 By MS/MS 1.5 0.5 1 1 2 24526000 0 0 24526000 13160 2184 13834 57118;57119 47681;47682 47682 2 0 0 5399000 TGTLVEEAFWIDKIK VRPFTLGQLKELLGRTGTLVEEAFWIDKIK TGTLVEEAFWIDKIKSHCFVTYSTVEEAVA R T G I K S 1 0 0 1 0 0 2 1 0 2 1 2 0 1 0 0 2 1 0 1 0 0 15 1 1748.9349 Q9UKV3 Q9UKV3 1035 1049 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 0.046786 43.791 By MS/MS 2.5 0.5 1 1 2 1535000 0 1535000 0 13161 2184 13835 57120;57121 47683 47683 1 0 681560 0 TGTVSLEVR VFEDVVLHQATILPKTGTVSLEVRLLEASR ATILPKTGTVSLEVRLLEASRAFEVSENGN K T G V R L 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 1 2 0 0 2 0 0 9 0 960.52401 P49327 P49327 928 936 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.026994 78.149 By MS/MS 1 0 1 1 4034400 0 4034400 0 13162 853 13836 57122 47684 47684 1 0 1971900 0 TGVAVNKPAEFTVDAK FHPDRVKARGPGLEKTGVAVNKPAEFTVDA GVAVNKPAEFTVDAKHGGKAPLRVQVQDNE K T G A K H 3 0 1 1 0 0 1 1 0 0 0 2 0 1 1 0 2 0 0 3 0 0 16 1 1645.8675 P21333 P21333 685 700 FLNA Filamin-A yes yes 2;3 6.0399E-46 223.36 By MS/MS By MS/MS 1.67 0.745 3 2 1 3 3 78192000 0 40424000 37768000 13163 623 13837 57123;57124;57125;57126;57127;57128 47685;47686;47687 47687 3 0 19597000 8127900 TGVELGKPTHFTVNAK HDASKVKAEGPGLSRTGVELGKPTHFTVNA GVELGKPTHFTVNAKAAGKGKLDVQFSGLT R T G A K A 1 0 1 0 0 0 1 2 1 0 1 2 0 1 1 0 3 0 0 2 0 0 16 1 1697.9101 P21333 P21333 885 900 FLNA Filamin-A yes yes 3;4 9.3976E-06 118.47 By MS/MS By MS/MS 1.33 0.471 4 2 2 4 123320000 0 50048000 73270000 13164 623 13838 57129;57130;57131;57132;57133;57134 47688;47689;47690;47691 47688 4 0 24463000 15884000 TGVEVGKPTHFTVLTK HDASKVKAEGPGLNRTGVEVGKPTHFTVLT GVEVGKPTHFTVLTKGAGKAKLDVQFAGTA R T G T K G 0 0 0 0 0 0 1 2 1 0 1 2 0 1 1 0 4 0 0 3 0 0 16 1 1712.9461 Q14315 Q14315 880 895 FLNC Filamin-C yes yes 3 0.0070094 60.307 By MS/MS 1 0 1 1 9739900 0 9739900 0 13165 1298 13839 57135 47692 47692 1 0 4760700 0 TGVHHYSGNNIELGTACGK ALRKSEIEYYAMLAKTGVHHYSGNNIELGT HYSGNNIELGTACGKYYRVCTLAIIDPGDS K T G G K Y 1 0 2 0 1 0 1 4 2 1 1 1 0 0 0 1 2 0 1 1 0 0 19 0 2013.9327 P62888 P62888 69 87 RPL30 60S ribosomal protein L30 yes yes 3 1.049E-06 106.67 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 34179000 11620000 0 22559000 13166 1046 13840 57136;57137;57138;57139 47693;47694 47694 2 7170600 0 5313100 TGYTLDVTTGQR TKGPDEAKIKALLERTGYTLDVTTGQRKYG LERTGYTLDVTTGQRKYGGPPPDSVYSGVQ R T G Q R K 0 1 0 1 0 1 0 2 0 0 1 0 0 0 0 0 4 0 1 1 0 0 12 0 1310.6466 O43390;O60506 O43390 134 145 HNRNPR;SYNCRIP Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q no no 2 1.0376E-106 262.63 By MS/MS By MS/MS By MS/MS 4.69 2.57 2 1 3 3 1 2 2 1 1 2 9 5 676130000 46964000 360750000 268420000 13167 195;227 13841 57140;57141;57142;57143;57144;57145;57146;57147;57148;57149;57150;57151;57152;57153;57154;57155 47695;47696;47697;47698;47699;47700;47701;47702;47703;47704;47705;47706;47707;47708;47709;47710;47711 47708 17 47619000 148620000 50872000 THEAQIQEMR QEVNILKKTLEEEAKTHEAQIQEMRQKHSQ EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K T H M R Q 1 1 0 0 0 2 2 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 10 0 1241.5823 P35579 P35579 1182 1191 MYH9 Myosin-9 yes yes 2;3 9.0369E-06 135.43 By MS/MS By MS/MS 1.38 0.484 5 3 5 3 143550000 0 126160000 17392000 13168 752 13842;13843 57156;57157;57158;57159;57160;57161;57162;57163 47712;47713;47714;47715;47716;47717;47718 47718 363 6 0 61459000 3759900 THEDIEAQIR ______________________________ AKIAKTHEDIEAQIREIQGKKAALDEAQGV K T H I R E 1 1 0 1 0 1 2 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 10 0 1210.5942 O75533 O75533 7 16 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 2.6345E-05 108.81 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 6510100 0 0 6510100 13169 270 13844 57164;57165;57166 47719;47720;47721 47720 2 0 0 1471100 THFDYQFGYR RGRGRGRGRGRGGTRTHFDYQFGYRKFDGV RGGTRTHFDYQFGYRKFDGVEGPRTPKYMN R T H Y R K 0 1 0 1 0 1 0 1 1 0 0 0 0 2 0 0 1 0 2 0 0 0 10 0 1332.5887 Q6PKG0 Q6PKG0 357 366 LARP1 La-related protein 1 yes yes 2 2.6618E-05 151.5 By MS/MS 2 0 1 1 4273100 0 4273100 0 13170 1497 13845 57167 47722 47722 1 0 1924200 0 THHNDTELIR ESASLVASGKAELIKTHHNDTELIRKLREE AELIKTHHNDTELIRKLREEGKVIEPLKDF K T H I R K 0 1 1 1 0 0 1 0 2 1 1 0 0 0 0 0 2 0 0 0 0 0 10 0 1234.6054 P49915 P49915 390 399 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 3 0.029808 56.404 By MS/MS By MS/MS 3 0 2 1 1 3707900 0 754920 2953000 13171 873 13846 57168;57169 47723;47724 47723 2 0 321820 572740 THIDTVINALK MCTLASSEFSHEAVKTHIDTVINALKTERD EAVKTHIDTVINALKTERDVSVRQRAADLL K T H L K T 1 0 1 1 0 0 0 0 1 2 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1223.6874 O95782 O95782 368 378 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.048084 74.267 By matching By MS/MS 1.5 0.5 1 1 1 1 19259000 0 421860 18837000 13172 339 13847 57170;57171 47725 47725 1 0 206200 4256700 THINIVVIGHVDSGK ______________________________ THINIVVIGHVDSGKSTTTGHLIYKCGGID K T H G K S 0 0 1 1 0 0 0 2 2 3 0 1 0 0 0 1 1 0 0 3 0 0 15 0 1587.8733 Q5VTE0;P68104;Q05639 Q5VTE0 6 20 EEF1A1P5;EEF1A1;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 2 no no 2;3 0.0097047 67.93 By matching By MS/MS By MS/MS 5.33 1.8 3 1 1 1 1 3 2 30019000 6322500 14798000 8898600 13173 1076;1165 13848 57172;57173;57174;57175;57176;57177 47726;47727;47728 47726 3 4932700 4197300 1979000 THLAPYSDELR EEMRDRARAHVDALRTHLAPYSDELRQRLA DALRTHLAPYSDELRQRLAARLEALKENGG R T H L R Q 1 1 0 1 0 0 1 0 1 0 2 0 0 0 1 1 1 0 1 0 0 0 11 0 1300.6412 P02647 P02647 185 195 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 0.00032712 121.73 By MS/MS By matching 5.5 2.36 1 2 1 1 1 3 3 51958000 27975000 0 23983000 13174 389 13849 57178;57179;57180;57181;57182;57183 47729;47730 47730 2 35102000 0 3835700 THLPEVFLSK NTKVMDKYTFELSRRTHLPEVFLSKVLEPT ELSRRTHLPEVFLSKVLEPTLKSLGECCDV R T H S K V 0 0 0 0 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 1 0 0 10 0 1169.6445 P02774 P02774 354 363 GC Vitamin D-binding protein yes yes 2 0.017332 84.522 By MS/MS 9.5 0.5 1 1 2 6344100 6344100 0 0 13175 397 13850 57184;57185 47731 47731 1 4534300 0 0 THLSLSHNPEQK YTKQGFGNLPICMAKTHLSLSHNPEQKGVP MAKTHLSLSHNPEQKGVPTGFILPIRDIRA K T H Q K G 0 0 1 0 0 1 1 0 2 0 2 1 0 0 1 2 1 0 0 0 0 0 12 0 1389.7001 P11586 P11586 867 878 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 3 0.058214 42.061 By matching By MS/MS 1.5 0.5 1 1 1 1 2165200 0 888830 1276400 13176 528 13851 57186;57187 47732 47732 1 0 434450 288440 THMLTNAILVQQIIK VGQLLRLLLQHAPLRTHMLTNAILVQQIIK THMLTNAILVQQIIKNITTLKSGSVQEQWL R T H I K N 1 0 1 0 0 2 0 0 1 3 2 1 1 0 0 0 2 0 0 1 0 0 15 0 1721.9862 Q9NXF1 Q9NXF1 875 889 TEX10 Testis-expressed sequence 10 protein yes yes 3 0.00046324 88.706 By MS/MS 2 0 1 1 5297900 0 0 5297900 13177 2089 13852 57188 47733 47733 1 0 0 1197200 THMVVANTMEDFQK DIQVTLFTRASEDLKTHMVVANTMEDFQKI KTHMVVANTMEDFQKILDSGKIVQIPFCGE K T H Q K I 1 0 1 1 0 1 1 0 1 0 0 1 2 1 0 0 2 0 0 2 0 0 14 0 1649.7542 P07814 P07814 1422 1435 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.05248 62.799 By MS/MS 1 0 1 1 3984700 0 0 3984700 13178 465 13853 57189 47734 47734 0 0 0 858560 THNDIIHNENMR TLSSELSQARDENKRTHNDIIHNENMRQGR NKRTHNDIIHNENMRQGRDKYKTLRQIRQG R T H M R Q 0 1 3 1 0 0 1 0 2 2 0 0 1 0 0 0 1 0 0 0 0 0 12 0 1492.6841 P15311 P15311 548 559 EZR Ezrin yes yes 3 0.039057 50.659 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 13452000 0 3913200 9538700 13179 569 13854 57190;57191;57192 47735;47736 47735 2 0 1668200 1808600 THNEHLAGVLK QRRKKPASQKKRRFKTHNEHLAGVLKDYSD RRFKTHNEHLAGVLKDYSDITSSK______ K T H L K D 1 0 1 0 0 0 1 1 2 0 2 1 0 0 0 0 1 0 0 1 0 0 11 0 1217.6517 P29084 P29084 272 282 GTF2E2 Transcription initiation factor IIE subunit beta yes yes 3 0.033073 54.772 By matching By MS/MS 6 0 2 1 1 5470900 0 1132000 4338900 13180 697 13855 57193;57194 47737 47737 1 0 391850 649150 THNGESVSYLFSHVPL QVIDISMILAEAIRRTHNGESVSYLFSHVP HNGESVSYLFSHVPL_______________ R T H P L - 0 0 1 0 0 0 1 1 2 0 2 0 0 1 1 3 1 0 1 2 0 0 16 0 1785.8686 P60891;P21108;P11908 P60891 303 318 PRPS1;PRPS1L1;PRPS2 Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2 yes no 3 1.5846E-05 106.19 By MS/MS By MS/MS 6.33 0.471 2 1 2 1 15479000 9948500 5530800 0 13181 529 13856 57195;57196;57197 47738;47739 47738 2 13665000 1914600 0 THNLEPYFESFINNLR QTKWELLQQVDTSTRTHNLEPYFESFINNL HNLEPYFESFINNLRRRVDQLKSDQSRLDS R T H L R R 0 1 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 16 0 1992.9694 P04264;CON__P04264 P04264 224 239 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3;4 5.9902E-284 335.45 By MS/MS By MS/MS By MS/MS 4.76 2.43 4 5 5 6 6 4 3 5 3 10 6 25 3633500000 825060000 74378000 2734000000 + 13182 413 13857 57198;57199;57200;57201;57202;57203;57204;57205;57206;57207;57208;57209;57210;57211;57212;57213;57214;57215;57216;57217;57218;57219;57220;57221;57222;57223;57224;57225;57226;57227;57228;57229;57230;57231;57232;57233;57234;57235;57236;57237;57238 47740;47741;47742;47743;47744;47745;47746;47747;47748;47749;47750;47751;47752;47753;47754;47755;47756;47757;47758;47759;47760;47761;47762;47763;47764;47765;47766;47767;47768;47769;47770;47771;47772;47773;47774;47775;47776;47777;47778;47779;47780;47781;47782;47783;47784;47785;47786;47787;47788;47789;47790;47791;47792;47793;47794;47795;47796;47797;47798;47799;47800;47801;47802;47803;47804;47805;47806;47807;47808;47809;47810;47811;47812;47813 47742 74 667810000 30114000 507610000 THNLEPYFESFINNLRR QTKWELLQQVDTSTRTHNLEPYFESFINNL NLEPYFESFINNLRRRVDQLKSDQSRLDSE R T H R R R 0 2 3 0 0 0 2 0 1 1 2 0 0 2 1 1 1 0 1 0 0 0 17 1 2149.0705 P04264;CON__P04264 P04264 224 240 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3;4 2.1166E-37 209.13 By MS/MS By MS/MS By MS/MS 4.82 2.55 3 3 1 2 4 4 3 2 7 6 9 280070000 140390000 30318000 109370000 + 13183 413 13858 57239;57240;57241;57242;57243;57244;57245;57246;57247;57248;57249;57250;57251;57252;57253;57254;57255;57256;57257;57258;57259;57260 47814;47815;47816;47817;47818;47819;47820;47821;47822;47823;47824;47825;47826;47827;47828;47829;47830;47831;47832;47833;47834;47835;47836;47837;47838 47819 25 115110000 12145000 22324000 THNVHVEIEQR MEVDRSPGLPMSDLKTHNVHVEIEQRWHQV SDLKTHNVHVEIEQRWHQVETTPLREEKQV K T H Q R W 0 1 1 0 0 1 2 0 2 1 0 0 0 0 0 0 1 0 0 2 0 0 11 0 1360.6848 Q6WCQ1 Q6WCQ1 629 639 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.00081811 102.66 By MS/MS 2.5 1.12 1 1 1 1 4 24322000 0 0 24322000 13184 1507 13859 57261;57262;57263;57264 47839;47840 47840 2 0 0 5289900 THPVEIFYTPEPER QIYFDNCPLLTIPGRTHPVEIFYTPEPERD RTHPVEIFYTPEPERDYLEAAIRTVIQIHM R T H E R D 0 1 0 0 0 0 3 0 1 1 0 0 0 1 3 0 2 0 1 1 0 0 14 0 1713.8362 O43143 O43143 316 329 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2;3 0.00081743 89.26 By MS/MS 2 0 2 2 14148000 0 0 14148000 13185 186 13860 57265;57266 47841;47842 47841 2 0 0 3197200 THSDQFLVAFK MLVGIGDKIRGILYRTHSDQFLVAFKEVGR ILYRTHSDQFLVAFKEVGRKPPTFGDASVI R T H F K E 1 0 0 1 0 1 0 0 1 0 1 1 0 2 0 1 1 0 0 1 0 0 11 0 1291.6561 P36542 P36542 144 154 ATP5C1 ATP synthase subunit gamma, mitochondrial yes yes 2;3 4.2619E-05 146.11 By MS/MS By MS/MS 6.2 0.4 4 1 2 3 26940000 0 6892600 20048000 13186 760 13861 57267;57268;57269;57270;57271 47843;47844;47845 47844 3 0 2386000 3092100 THSVPATPTSTPVPNPEAESSSK NEPPGRELTKEDLFKTHSVPATPTSTPVPN TSTPVPNPEAESSSKEGELDARDLEMSKKV K T H S K E 2 0 1 0 0 0 2 0 1 0 0 1 0 0 5 5 4 0 0 2 0 0 23 0 2320.1183 Q96FF9 Q96FF9 105 127 CDCA5 Sororin yes yes 3 5.0759E-10 96.848 By MS/MS 7 0 1 1 6364400 0 0 6364400 13187 1782 13862 57272 47846 47846 1 0 0 1129300 THTCPPCPAPELLGGPSVFLFPPKPK NTKVDKKVEPKSCDKTHTCPPCPAPELLGG LLGGPSVFLFPPKPKDTLMISRTPEVTCVV K T H P K D 1 0 0 0 2 0 1 2 1 0 3 2 0 2 8 1 2 0 0 1 0 0 26 1 2843.4503 P0DOX5;P01857 P0DOX5 225 250 IGHG1 Ig gamma-1 chain C region yes no 4 1.3331E-12 93.966 By MS/MS 9 0 1 1 14039000 14039000 0 0 13188 381 13863 57273 47847 47847 1 7880400 0 0 THTMTGSPGEGGLLPR KNGLLFTYGVTGSGKTHTMTGSPGEGGLLP HTMTGSPGEGGLLPRCLDMIFNSIGSFQAK K T H P R C 0 1 0 0 0 0 1 4 1 0 2 0 1 0 2 1 3 0 0 0 0 0 16 0 1609.7882 Q02241 Q02241 119 134 KIF23 Kinesin-like protein KIF23 yes yes 3 1.4596E-05 107.11 By MS/MS 2 0 1 1 5509900 0 0 5509900 13189 1145 13864 57274 47848 47848 1 0 0 1245100 THTQGQAFSLSVFHHWQIVPGDPLDK FIPAIDSFGFETDLRTHTQGQAFSLSVFHH VFHHWQIVPGDPLDKSIVIRPLEPQPAPHL R T H D K S 1 0 0 2 0 3 0 2 3 1 2 1 0 2 2 2 2 1 0 2 0 0 26 0 2944.462 Q15029 Q15029 889 914 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 4 1.8489E-05 65.801 By MS/MS 2 0 1 1 30668000 0 0 30668000 13190 1335 13865 57275 47849 47849 1 0 0 6930300 THVTHHPLSDHEATLR LENGKETLQRAEPPKTHVTHHPLSDHEATL HVTHHPLSDHEATLRCWALGFYPAEITLTW K T H L R C 1 1 0 1 0 0 1 0 4 0 2 0 0 0 1 1 3 0 0 1 0 0 16 0 1849.9183 P10321 P10321 211 226 HLA-C HLA class I histocompatibility antigen, Cw-7 alpha chain yes yes 4 0.0060286 57.788 By MS/MS 5 0 1 1 2141700 0 0 2141700 13191 508 13866 57276 47850 47850 1 0 0 298720 THYIVGYNLPSYEYLYNLGDQYALK EMEIRPRFPLFGGWKTHYIVGYNLPSYEYL SYEYLYNLGDQYALKMRFVDHVFDEQVIDS K T H L K M 1 0 2 1 0 1 1 2 1 1 4 1 0 0 1 1 1 0 6 1 0 0 25 0 2996.4596 P04843 P04843 328 352 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 3 0.0033243 41.763 By MS/MS 1 0 1 1 3072700 0 0 3072700 13192 419 13867 57277 47851 47851 1 0 0 662060 THYYAVAVVK RPVAAEVYGTERQPRTHYYAVAVVKKGGSF ERQPRTHYYAVAVVKKGGSFQLNELQGLKS R T H V K K 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 2 3 0 0 10 0 1149.6182 P02788 P02788 109 118 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 2.0108E-05 150.24 By MS/MS 5.78 2.9 1 1 1 1 1 1 1 1 1 9 266390000 266390000 0 0 13193 400 13868 57278;57279;57280;57281;57282;57283;57284;57285;57286 47852;47853;47854;47855;47856;47857;47858;47859;47860;47861 47859 10 345530000 0 0 THYYAVAVVKK RPVAAEVYGTERQPRTHYYAVAVVKKGGSF RQPRTHYYAVAVVKKGGSFQLNELQGLKSC R T H K K G 2 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 2 3 0 0 11 1 1277.7132 P02788 P02788 109 119 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 3 0.016809 64.906 By MS/MS 10 0 1 1 6569000 6569000 0 0 13194 400 13869 57287 47862 47862 1 11967000 0 0 TIAATPIQTLPQSQSTPK QPSITLTSQPATPTRTIAATPIQTLPQSQS ATPIQTLPQSQSTPKRIDTPSLEEPSDLEE R T I P K R 2 0 0 0 0 3 0 0 0 2 1 1 0 0 3 2 4 0 0 0 0 0 18 0 1881.0207 P14859 P14859 255 272 POU2F1 POU domain, class 2, transcription factor 1 yes yes 2 1.6726E-08 138.42 By MS/MS By MS/MS 3 0.707 1 2 1 2 2 32676000 0 10062000 22614000 13195 564 13870 57288;57289;57290;57291 47863;47864;47865 47863 3 0 3743400 4538200 TIAECLADELINAAK LLCTGAREAAFRNIKTIAECLADELINAAK TIAECLADELINAAKGSSNSYAIKKKDELE K T I A K G 4 0 1 1 1 0 2 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 15 0 1630.8236 P46782 P46782 168 182 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2;3 0.0015339 79.693 By MS/MS By MS/MS 7.5 0.764 4 1 1 2 4 60237000 0 622920 59614000 13196 832 13871 57292;57293;57294;57295;57296;57297 47866;47867 47867 2 0 357690 10660000 TIAFLLPMFR SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ TGSGKTIAFLLPMFRHIMDQRSLEEGEGPI K T I F R H 1 1 0 0 0 0 0 0 0 1 2 0 1 2 1 0 1 0 0 0 0 0 10 0 1207.6787 Q7L014 Q7L014 423 432 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 2.9202E-22 188.81 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 16256000 0 5438400 10817000 13197 1520 13872 57298;57299;57300;57301 47868;47869;47870 47870 3 0 2449000 2277600 TIAPIIGR EKLLHLAKLMPTQWRTIAPIIGRTAAQCLE LMPTQWRTIAPIIGRTAAQCLEHYEFLLDK R T I G R T 1 1 0 0 0 0 0 1 0 3 0 0 0 0 1 0 1 0 0 0 0 0 8 0 839.52289 Q99459 Q99459 84 91 CDC5L Cell division cycle 5-like protein yes yes 2 0.061611 78.616 By MS/MS 2 0 1 1 7108600 0 0 7108600 13198 1843 13873 57302 47871 47871 0 0 0 1606400 TIAPQNAPR NSPIHHIPSRRSPAKTIAPQNAPRDESRGR RRSPAKTIAPQNAPRDESRGRSSFYPDGGD K T I P R D 2 1 1 0 0 1 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 9 0 966.52468 Q9NYF8 Q9NYF8 304 312 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2 0.00098941 105.12 By matching By MS/MS By MS/MS 2.29 1.03 2 2 2 1 1 2 4 11954000 783920 5566300 5604200 13199 2097 13874 57303;57304;57305;57306;57307;57308;57309 47872;47873;47874;47875;47876 47875 5 783920 2488900 1222100 TIAPTGHLHTVEFHQQR ESGTGSGSVSHAIIRTIAPTGHLHTVEFHQ APTGHLHTVEFHQQRAEKAREEFQEHRVGR R T I Q R A 1 1 0 0 0 2 1 1 3 1 1 0 0 1 1 0 3 0 0 1 0 0 17 0 1971.0075 Q96FX7 Q96FX7 124 140 TRMT61A tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A yes yes 4 3.706E-06 108.34 By MS/MS By MS/MS 6 0 2 1 1 20841000 0 7222700 13619000 13200 1785 13875 57310;57311 47877;47878 47877 2 0 2500200 2037500 TIAQDYGVLK GLGPMNIPLVSDPKRTIAQDYGVLKADEGI SDPKRTIAQDYGVLKADEGISFRGLFIIDD R T I L K A 1 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1106.5972 Q06830 Q06830 111 120 PRDX1 Peroxiredoxin-1 yes yes 2 0.0075363 92.439 By matching By MS/MS By MS/MS 7 0 3 1 1 1 245250000 24593000 52718000 167940000 13201 1173 13876 57312;57313;57314 47879;47880 47880 2 53003000 30271000 29800000 TIAQGNLSNTDVQAAK TAAGDVIKAAYNQVKTIAQGNLSNTDVQAA IAQGNLSNTDVQAAKNKLKAGYLMSVESSE K T I A K N 3 0 2 1 0 2 0 1 0 1 1 1 0 0 0 1 2 0 0 1 0 0 16 0 1629.8322 P22695 P22695 360 375 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 2 4.1509E-05 134.98 By MS/MS 5.5 0.5 1 1 2 26442000 0 26442000 0 13202 635 13877 57315;57316 47881 47881 1 0 8839700 0 TICSHVQNMIK VDKWWGNRKELATIRTICSHVQNMIKGVTL ATIRTICSHVQNMIKGVTLGFRYKMRSVYA R T I I K G 0 0 1 0 1 1 0 0 1 2 0 1 1 0 0 1 1 0 0 1 0 0 11 0 1329.6533 Q5IFJ7;P32969 Q5IFJ7 72 82 RPL9 60S ribosomal protein L9 yes no 2 1.5985E-13 178.94 By matching By MS/MS 7 0 3 1 2 115390000 0 8358100 107030000 13203 729 13878;13879 57317;57318;57319 47882;47883 47883 331 2 0 4799300 18992000 TIDDLKNQILNLTTDNANILLQIDNAR NSHQGEPRDYSKYYKTIDDLKNQILNLTTD TTDNANILLQIDNARLAADDFRLKYENEVA K T I A R L 2 1 5 4 0 2 0 0 0 4 5 1 0 0 0 0 3 0 0 0 0 0 27 1 3051.62 P13645;CON__P13645 P13645 202 228 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3;4 0 420.53 By MS/MS By MS/MS By MS/MS 3.14 2.53 5 3 1 2 1 1 1 4 2 8 227550000 3845700 1592400 222120000 + 13204 56 13880 57320;57321;57322;57323;57324;57325;57326;57327;57328;57329;57330;57331;57332;57333 47884;47885;47886;47887;47888;47889;47890;47891;47892;47893;47894 47889 11 3053400 778320 48129000 TIDNADSSTLHAVTFLR GRINLFRADHKEAVRTIDNADSSTLHAVTF DNADSSTLHAVTFLRTPEILTVNSIGQLKI R T I L R T 2 1 1 2 0 0 0 0 1 1 2 0 0 1 0 2 3 0 0 1 0 0 17 0 1859.9377 Q8NFH3 Q8NFH3 166 182 NUP43 Nucleoporin Nup43 yes yes 3 0.0011732 73.464 By MS/MS 5 0 1 1 14594000 0 0 14594000 13205 1641 13881 57334 47895 47895 1 0 0 2035600 TIEDAIAVLSVAEEAADRHPER NVNRRVLEEGSVEARTIEDAIAVLSVAEEA VLSVAEEAADRHPERRMRAAFTAFEEAQLP R T I E R R 5 2 0 2 0 0 4 0 1 2 1 0 0 0 1 1 1 0 0 2 0 0 22 1 2391.203 Q96CT7 Q96CT7 146 167 CCDC124 Coiled-coil domain-containing protein 124 yes yes 3;4 2.2339E-20 145.52 By matching By MS/MS 6 0 3 1 2 18174000 0 1906000 16268000 13206 1761 13882 57335;57336;57337 47896;47897 47896 2 0 659800 2433900 TIEELQNK RQAPGPARDYSQYYRTIEELQNKILTATVD DYSQYYRTIEELQNKILTATVDNANILLQI R T I N K I 0 0 1 0 0 1 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 0 973.50803 Q04695;CON__Q04695 Q04695 137 144 KRT17 Keratin, type I cytoskeletal 17 yes no 2 0.002741 107.43 By MS/MS By MS/MS By MS/MS 5.58 1.75 2 1 3 3 1 1 1 4 2 6 183610000 16669000 40744000 126200000 + 13207 73 13883 57338;57339;57340;57341;57342;57343;57344;57345;57346;57347;57348;57349 47898;47899;47900;47901;47902;47903;47904;47905 47905 8 13437000 10672000 19352000 TIEELRDK QSPASPERDYSPYYKTIEELRDKILTATIE DYSPYYKTIEELRDKILTATIENNRVILEI K T I D K I 0 1 0 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 0 0 0 8 1 1002.5346 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 158 165 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.022165 107 By MS/MS 1 0 1 1 10085000 10085000 0 0 + 13208 57;548 13884 57350 47906 47906 1 10085000 0 0 TIESILEPVAQQISHLVIMHEEGEVDGK ______________________________ SHLVIMHEEGEVDGKAIPDLTAPVAAVQAA R T I G K A 1 0 0 1 0 2 5 2 2 4 2 1 1 0 1 2 1 0 0 3 0 0 28 0 3100.5751 P18206 P18206 8 35 VCL Vinculin yes yes 4 1.0511E-10 80.847 By MS/MS 2 0 1 1 1917300 0 0 1917300 13209 595 13885 57351 47907 47907 1 0 0 433280 TIEVLQLQDQGSK SLSIKVEESYAMPTKTIEVLQLQDQGSKML TKTIEVLQLQDQGSKMLLDSVLTTHERVVQ K T I S K M 0 0 0 1 0 3 1 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 13 0 1457.7726 Q96GC5 Q96GC5 131 143 MRPL48 39S ribosomal protein L48, mitochondrial yes yes 2 5.8184E-18 127.83 By MS/MS 8 0 1 1 0 0 0 0 13210 1789 13886 57352 47908 47908 1 0 0 0 TIFFKDDGNYK DFFKSAMPEGYVQERTIFFKDDGNYKTRAE VQERTIFFKDDGNYKTRAEVKFEGDTLVNR R T I Y K T 0 0 1 2 0 0 0 1 0 1 0 2 0 2 0 0 1 0 1 0 0 0 11 1 1346.6507 CON__Q9U6Y5 CON__Q9U6Y5 97 107 yes yes 2;3 9.8236E-26 200.86 By MS/MS By MS/MS 5.29 0.958 3 6 3 2 9 5 561460000 0 330700000 230750000 + 13211 101 13887 57353;57354;57355;57356;57357;57358;57359;57360;57361;57362;57363;57364;57365;57366 47909;47910;47911;47912;47913;47914;47915;47916;47917;47918;47919;47920 47913 12 0 94345000 33772000 TIFSYFK EADRMIDMGFEGDIRTIFSYFKGQRQTLLF MGFEGDIRTIFSYFKGQRQTLLFSATMPKK R T I F K G 0 0 0 0 0 0 0 0 0 1 0 1 0 2 0 1 1 0 1 0 0 0 7 0 904.46945 Q9UJV9 Q9UJV9 360 366 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.06211 74.415 By matching By MS/MS By matching 3.33 0.471 2 1 1 1 1 8161000 1651400 3558600 2951000 13212 2171 13888 57367;57368;57369 47921 47921 1 1905300 1517000 482000 TIFTGHTAVVEDVSWHLLHESLFGSVADDQK DISAVPKEGKVVDAKTIFTGHTAVVEDVSW LLHESLFGSVADDQKLMIWDTRSNNTSKPS K T I Q K L 2 0 0 3 0 1 2 2 3 1 3 1 0 2 0 3 3 1 0 4 0 0 31 0 3437.6892 Q09028 Q09028 221 251 RBBP4 Histone-binding protein RBBP4 yes yes 4;5 2.9815E-48 136.49 By MS/MS 4.67 0.471 1 2 3 31137000 0 0 31137000 13213 1188 13889 57370;57371;57372 47922;47923 47922 2 0 0 4894800 TIGGGDDSFNTFFSETGAGK LEHGIQPDGQMPSDKTIGGGDDSFNTFFSE DDSFNTFFSETGAGKHVPRAVFVDLEPTVI K T I G K H 1 0 1 2 0 0 1 5 0 1 0 1 0 3 0 2 3 0 0 0 0 0 20 0 2006.8858 P68363;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 41 60 TUBA1B;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3 8.9801E-141 275.82 By MS/MS By MS/MS By MS/MS 4.6 1.94 2 2 4 7 6 4 4 1 2 10 18 2790200000 55895000 446990000 2287400000 13214 1077;1515;1883 13890 57373;57374;57375;57376;57377;57378;57379;57380;57381;57382;57383;57384;57385;57386;57387;57388;57389;57390;57391;57392;57393;57394;57395;57396;57397;57398;57399;57400;57401;57402 47924;47925;47926;47927;47928;47929;47930;47931;47932;47933;47934;47935;47936;47937;47938;47939;47940;47941;47942;47943;47944;47945;47946;47947;47948;47949;47950;47951;47952 47924 29 43729000 156410000 366130000 TIGIIGAPFSK ______________________________ AKSRTIGIIGAPFSKGQPRGGVEEGPTVLR R T I S K G 1 0 0 0 0 0 0 2 0 3 0 1 0 1 1 1 1 0 0 0 0 0 11 0 1102.6386 P05089 P05089 7 17 ARG1 Arginase-1 yes yes 2 0.0018224 109.42 By MS/MS By matching By matching 5 3.07 1 2 1 1 1 1 4 1 2 40001000 35913000 602450 3485800 13215 422 13891 57403;57404;57405;57406;57407;57408;57409 47953;47954;47955;47956 47954 3 30677000 256830 5903900 TIGISVDPR LEELRVAGIHKKVARTIGISVDPRRRNKST HKKVARTIGISVDPRRRNKSTESLQANVQR R T I P R R 0 1 0 1 0 0 0 1 0 2 0 0 0 0 1 1 1 0 0 1 0 0 9 0 956.5291 P26373 P26373 93 101 RPL13 60S ribosomal protein L13 yes yes 2 0.04397 73.248 By MS/MS By matching 6.67 0.471 1 2 2 1 289710000 0 141280000 148430000 13216 669 13892 57410;57411;57412 47957 47957 1 0 64217000 26338000 TIGTGLVTNTLAMTEEEK ILEKGQRFTLRDGNRTIGTGLVTNTLAMTE TGLVTNTLAMTEEEKNIKWG__________ R T I E K N 1 0 1 0 0 0 3 2 0 1 2 1 1 0 0 0 5 0 0 1 0 0 18 0 1906.9558 P49411 P49411 430 447 TUFM Elongation factor Tu, mitochondrial yes yes 2 1.4518E-08 129.37 By MS/MS By MS/MS 5 0 2 1 1 17394000 0 3536800 13857000 13217 856 13893 57413;57414 47958;47959 47959 2 0 911680 1932800 TIHLSSIRPPR NADAIVVKLNSGDYKTIHLSSIRPPRLEGE GDYKTIHLSSIRPPRLEGENTQDKNKKLRP K T I P R L 0 2 0 0 0 0 0 0 1 2 1 0 0 0 2 2 1 0 0 0 0 0 11 1 1275.7412 Q7KZF4 Q7KZF4 367 377 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 0.0022097 91.937 By MS/MS By MS/MS 2 0 2 1 1 41447000 0 6819400 34628000 13218 1518 13894 57415;57416 47960;47961;47962 47962 3 0 3070900 7825200 TIIFVETK LIQLMEEIMAEKENKTIIFVETKRRCDDLT MAEKENKTIIFVETKRRCDDLTRRMRRDGW K T I T K R 0 0 0 0 0 0 1 0 0 2 0 1 0 1 0 0 2 0 0 1 0 0 8 0 949.54843 Q92841 Q92841 421 428 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 0.0062661 98.299 By matching By MS/MS By MS/MS 2.83 0.687 2 3 1 1 2 3 112780000 4072000 33339000 75369000 13219 1725 13895 57417;57418;57419;57420;57421;57422 47963;47964;47965;47966;47967 47967 5 4698200 14260000 14557000 TIIQNPTDQQK MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE DGEKTIIQNPTDQQKKDHEKAEFEVHEVYA K T I Q K K 0 0 1 1 0 3 0 0 0 2 0 1 0 0 1 0 2 0 0 0 0 0 11 0 1284.6674 Q9UQ80 Q9UQ80 200 210 PA2G4 Proliferation-associated protein 2G4 yes yes 2 5.9079E-07 154.35 By MS/MS By MS/MS By MS/MS 4.67 1.25 2 2 3 1 1 1 4 4 197220000 6249500 85476000 105490000 13220 2220 13896 57423;57424;57425;57426;57427;57428;57429;57430;57431 47968;47969;47970;47971;47972;47973;47974;47975;47976;47977 47970 10 5006600 23266000 15523000 TIIQNPTDQQKK MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE GEKTIIQNPTDQQKKDHEKAEFEVHEVYAV K T I K K D 0 0 1 1 0 3 0 0 0 2 0 2 0 0 1 0 2 0 0 0 0 0 12 1 1412.7623 Q9UQ80 Q9UQ80 200 211 PA2G4 Proliferation-associated protein 2G4 yes yes 2 0.01161 99.653 By MS/MS 5 0 1 1 2544800 0 2544800 0 13221 2220 13897 57432 47978 47978 1 0 655960 0 TIISYIDEQFER TPGYGDAINCRDCFKTIISYIDEQFERYLH CFKTIISYIDEQFERYLHDESGLNRRHIID K T I E R Y 0 1 0 1 0 1 2 0 0 3 0 0 0 1 0 1 1 0 1 0 0 0 12 0 1512.746 Q15019 Q15019 117 128 SEPT2 Septin-2 yes yes 2 0.00037873 128.27 By matching By MS/MS 4.33 0.471 2 1 1 2 6462700 1367600 0 5095100 13222 1330 13898 57433;57434;57435 47979 47979 1 1067000 0 779150 TILEEEITPTIQK QKTIEKKEAKLKEIKTILEEEITPTIQKLK IKTILEEEITPTIQKLKEERSSYLEYQKVM K T I Q K L 0 0 0 0 0 1 3 0 0 3 1 1 0 0 1 0 3 0 0 0 0 0 13 0 1513.8239 O95347 O95347 197 209 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.002607 107.06 By matching By MS/MS 1.33 0.471 2 1 1 2 26627000 0 1008900 25618000 13223 321 13899 57436;57437;57438 47980;47981 47981 2 0 493130 5713000 TILLNTK KFDVPGDENAEMDARTILLNTKRLIVDVIR ENAEMDARTILLNTKRLIVDVIRFQPGETL R T I T K R 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 2 0 0 0 0 0 7 0 801.496 P46940 P46940 1383 1389 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.065422 73.616 By MS/MS 2 0 1 1 4379700 0 4379700 0 13224 835 13900 57439 47982 47982 1 0 1972200 0 TILMMGR TPGKKEDLYLKPIQRTILMMGRYVEPIEDV LYLKPIQRTILMMGRYVEPIEDVPCGNIVG R T I G R Y 0 1 0 0 0 0 0 1 0 1 1 0 2 0 0 0 1 0 0 0 0 0 7 0 820.42992 P13639 P13639 450 456 EEF2 Elongation factor 2 yes yes 2 0.019765 102.98 By matching By MS/MS By MS/MS 2.43 0.904 1 3 2 1 2 3 2 28016000 9282000 9289500 9445000 13225 547 13901 57440;57441;57442;57443;57444;57445;57446 47983;47984;47985 47983 3 10797000 3977600 1958000 TILQGNYIQYSGDPLQDFTLMR KLSVHFHPSVALFAKTILQGNYIQYSGDPL IQYSGDPLQDFTLMRFLDRFVYRNPKPHKG K T I M R F 0 1 1 2 0 3 0 2 0 2 3 0 1 1 1 1 2 0 2 0 0 0 22 0 2572.2632 Q03701 Q03701 733 754 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 2 6.0413E-30 185.12 By MS/MS 1.5 0.5 1 1 2 2737900 0 0 2737900 13226 1157 13902 57447;57448 47986 47986 1 0 0 611050 TILQHLSEAWR ILDMMPEGIKQNKARTILQHLSEAWRCWKA NKARTILQHLSEAWRCWKANIPWKVPGLPT R T I W R C 1 1 0 0 0 1 1 0 1 1 2 0 0 0 0 1 1 1 0 0 0 0 11 0 1352.7201 Q6P2Q9 Q6P2Q9 708 718 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 1.0115E-05 143.96 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 24019000 0 3663200 20356000 13227 1490 13903 57449;57450;57451 47987;47988 47987 2 0 1790500 4417600 TILSNQTVDIPENVDITLK ______________________________ NQTVDIPENVDITLKGRTVIVKGPRGTLRR K T I L K G 0 0 2 2 0 1 1 0 0 3 2 1 0 0 1 1 3 0 0 2 0 0 19 0 2112.1314 Q5IFJ7;P32969 Q5IFJ7 3 21 RPL9 60S ribosomal protein L9 yes no 3 0.007627 49.718 By MS/MS 7 0 1 1 15160000 0 0 15160000 13228 729 13904 57452 47989 47989 1 0 0 2690000 TIMEQFNPSLR SRSEEMHRLTENVYKTIMEQFNPSLRNFIA NVYKTIMEQFNPSLRNFIAMGKNYEKALAG K T I L R N 0 1 1 0 0 1 1 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 11 0 1334.6653 Q9UQB8 Q9UQB8 19 29 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 yes yes 2 0.0012636 111.65 By matching By MS/MS By MS/MS 4 0 3 1 1 1 20379000 1788300 8119700 10471000 13229 2221 13905 57453;57454;57455 47990;47991 47990 2 1395200 2694600 1710200 TINEVENQILTR HIRVGWEQLLTTIARTINEVENQILTRDAK IARTINEVENQILTRDAKGISQEQMQEFRA R T I T R D 0 1 2 0 0 1 2 0 0 2 1 0 0 0 0 0 2 0 0 1 0 0 12 0 1428.7573 O43707;P12814 O43707 746 757 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2 7.6054E-26 204.64 By MS/MS By MS/MS 3 1.73 2 2 1 1 1 1 5 3 264520000 0 177000000 87517000 13230 210;540 13906 57456;57457;57458;57459;57460;57461;57462;57463 47992;47993;47994;47995;47996;47997 47993 6 0 79169000 19125000 TINLYPLTNYTFGTK GNKYIQQTKPLTLERTINLYPLTNYTFGTK TINLYPLTNYTFGTKEPLYEKDSSVAARFQ R T I T K E 0 0 2 0 0 0 0 1 0 1 2 1 0 1 1 0 4 0 2 0 0 0 15 0 1744.9036 O43809 O43809 36 50 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2;3 4.2437E-05 159.64 By MS/MS By MS/MS By MS/MS 7.11 0.875 2 5 1 1 1 4 4 181870000 1409100 35389000 145070000 13231 213 13907 57464;57465;57466;57467;57468;57469;57470;57471;57472 47998;47999;48000;48001;48002;48003;48004;48005;48006 48000 9 3037000 19691000 25780000 TINSDISIPEYK YADSGCKLLEDMVEKTINSDISIPEYKELL VEKTINSDISIPEYKELLQEFIDSDAAAEA K T I Y K E 0 0 1 1 0 0 1 0 0 3 0 1 0 0 1 2 1 0 1 0 0 0 12 0 1378.698 O75556 O75556 32 43 SCGB2A1 Mammaglobin-B yes yes 2 0.00089516 119.34 By MS/MS By matching 8 1.73 1 1 1 1 2 2 7 1 90919000 89949000 969650 0 13232 272 13908 57473;57474;57475;57476;57477;57478;57479;57480 48007;48008;48009;48010;48011;48012 48011 5 82123000 4905600 0 TIPELSVRPSELEDGHTALNTHSVSPMEK KTFKYLPISHPRFVRTIPELSVRPSELEDG GHTALNTHSVSPMEKIKQYQAGQTVTCFLK R T I E K I 1 1 1 1 0 0 4 1 2 1 3 1 1 0 3 4 3 0 0 2 0 0 29 1 3173.5663 Q14690 Q14690 1114 1142 PDCD11 Protein RRP5 homolog yes yes 4;5 8.849E-09 74.516 By MS/MS 1 0 2 2 39526000 0 0 39526000 13233 1314 13909 57481;57482 48013;48014 48013 2 0 0 8516500 TIPLTDNTVIEEHLGK RELILKRGQAKVKNKTIPLTDNTVIEEHLG IPLTDNTVIEEHLGKFGVICLEDLIHEIAF K T I G K F 0 0 1 1 0 0 2 1 1 2 2 1 0 0 1 0 3 0 0 1 0 0 16 0 1778.9414 Q6DKI1 Q6DKI1 173 188 RPL7L1 60S ribosomal protein L7-like 1 yes yes 3 0.0014572 75.574 By MS/MS 6 0 1 1 64070000 0 0 64070000 13234 1471 13910 57483 48015 48015 1 0 0 9585500 TIPSWATLSASQLAR DEKDQSKEKEKKVKKTIPSWATLSASQLAR TIPSWATLSASQLARAQKQTPMASSPRPKM K T I A R A 3 1 0 0 0 1 0 0 0 1 2 0 0 0 1 3 2 1 0 0 0 0 15 0 1600.8573 Q5SSJ5 Q5SSJ5 132 146 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2;3 3.1719E-25 202.03 By MS/MS By MS/MS By MS/MS 3.79 1.97 1 2 5 3 2 1 1 5 8 257270000 3501200 64180000 189590000 13235 1445 13911 57484;57485;57486;57487;57488;57489;57490;57491;57492;57493;57494;57495;57496;57497 48016;48017;48018;48019;48020;48021;48022;48023;48024;48025;48026;48027 48025 12 4039600 26516000 36332000 TIPWLEDR DYEKLASDLLEWIRRTIPWLEDRVPQKTIQ LLEWIRRTIPWLEDRVPQKTIQEMQQKLED R T I D R V 0 1 0 1 0 0 1 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 8 0 1028.5291 O43707 O43707 312 319 ACTN4 Alpha-actinin-4 yes yes 2 0.014595 100.19 By MS/MS 2 0 1 1 0 0 0 0 13236 210 13912 57498 48028 48028 1 0 0 0 TIPWLEDRVPQK DYEKLASDLLEWIRRTIPWLEDRVPQKTIQ IRRTIPWLEDRVPQKTIQEMQQKLEDFRDY R T I Q K T 0 1 0 1 0 1 1 0 0 1 1 1 0 0 2 0 1 1 0 1 0 0 12 1 1480.8038 O43707 O43707 312 323 ACTN4 Alpha-actinin-4 yes yes 2;3 1.0305E-06 163.91 By MS/MS By MS/MS 2 0.632 1 3 1 4 1 55706000 0 47583000 8122900 13237 210 13913 57499;57500;57501;57502;57503 48029;48030;48031;48032 48031 4 0 21445000 1835600 TIPWLENR DYEKLASDLLEWIRRTIPWLENRVPENTMH LLEWIRRTIPWLENRVPENTMHAMQQKLED R T I N R V 0 1 1 0 0 0 1 0 0 1 1 0 0 0 1 0 1 1 0 0 0 0 8 0 1027.5451 P12814;P35609 P12814 293 300 ACTN1;ACTN2 Alpha-actinin-1;Alpha-actinin-2 yes no 2 0.066848 68.787 By MS/MS 2.5 0.5 1 1 2 3131800 0 3131800 0 13238 540 13914 57504;57505 48033 48033 1 0 1394400 0 TIQFVDWCPTGFK PKDVNAAIATIKTKRTIQFVDWCPTGFKVG KRTIQFVDWCPTGFKVGINYQPPTVVPGGD R T I F K V 0 0 0 1 1 1 0 1 0 1 0 1 0 2 1 0 2 1 0 1 0 0 13 0 1597.7599 Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 Q71U36 340 352 TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2 0.0004168 124.1 By matching By MS/MS 4.38 1.49 1 1 3 1 1 1 3 5 235830000 0 22604000 213230000 13239 1515;1883 13915 57506;57507;57508;57509;57510;57511;57512;57513 48034;48035;48036;48037 48036 4 0 7707500 33336000 TIQGHLQSENFK TKLCQIFSDLNATYRTIQGHLQSENFKQRV TYRTIQGHLQSENFKQRVMTCFRAWEDWAI R T I F K Q 0 0 1 0 0 2 1 1 1 1 1 1 0 1 0 1 1 0 0 0 0 0 12 0 1400.7048 O15042 O15042 636 647 U2SURP U2 snRNP-associated SURP motif-containing protein yes yes 2;3 1.0183E-17 187.76 By matching By MS/MS 1.75 0.433 1 3 1 3 36162000 2528800 0 33633000 13240 163 13916 57514;57515;57516;57517 48038;48039;48040 48040 3 3046900 0 7600500 TIQQLETVLGEPLQSYF LMEDECEEVEHQCQKTIQQLETVLGEPLQS QQLETVLGEPLQSYF_______________ K T I Y F - 0 0 0 0 0 3 2 1 0 1 3 0 0 1 1 1 2 0 1 1 0 0 17 0 1965.0095 Q9H583 Q9H583 2128 2144 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2;3 0.0010886 74.296 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 48663000 0 1965200 46698000 13241 1984 13917 57518;57519;57520;57521 48041;48042;48043 48043 3 0 960560 10066000 TIQRPVTMGDEGGLRR FLKLKPFIDREWWHRTIQRPVTMGDEGGLR IQRPVTMGDEGGLRRLQSLIKNITLRRTKT R T I R R L 0 3 0 1 0 1 1 3 0 1 1 0 1 0 1 0 2 0 0 1 0 0 16 2 1784.9315 Q14527 Q14527 617 632 HLTF Helicase-like transcription factor yes yes 4 0.020198 51.147 By MS/MS 2 0 1 1 4974300 0 0 4974300 13242 1303 13918 57522 48044 48044 1 0 0 1124100 TIQTIALITYLMEHK NNLNGILADEMGLGKTIQTIALITYLMEHK TIQTIALITYLMEHKRINGPFLIIVPLSTL K T I H K R 1 0 0 0 0 1 1 0 1 3 2 1 1 0 0 0 3 0 1 0 0 0 15 0 1773.9699 P51531;P51532 P51532 786 800 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2;3 3.2092E-07 164.9 By MS/MS 1.33 0.471 2 1 3 11482000 0 0 11482000 13243 894;893 13919 57523;57524;57525 48045;48046;48047 48046 3 0 0 2480700 TIQTIALITYLMEHKR NNLNGILADEMGLGKTIQTIALITYLMEHK IQTIALITYLMEHKRINGPFLIIVPLSTLS K T I K R I 1 1 0 0 0 1 1 0 1 3 2 1 1 0 0 0 3 0 1 0 0 0 16 1 1930.071 P51531;P51532 P51532 786 801 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 4 1.8649E-05 102.64 By MS/MS 1.5 0.5 1 1 2 3808000 0 0 3808000 13244 894;893 13920 57526;57527 48048 48048 1 0 0 834890 TIQTPIGSTWNTQR RVLPYPFTHHWQFERTIQTPIGSTWNTQRA RTIQTPIGSTWNTQRAFQKLTTPKVVTKPG R T I Q R A 0 1 1 0 0 2 0 1 0 2 0 0 0 0 1 1 4 1 0 0 0 0 14 0 1601.8162 Q9BVJ6;Q5TAP6 Q9BVJ6 698 711 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 2 4.8E-58 233.54 By MS/MS By MS/MS 2.67 0.943 2 1 2 1 21209000 0 10910000 10299000 13245 1915 13921 57528;57529;57530 48049;48050;48051 48051 3 0 4558700 2327300 TIRPMDMETIEASVMK VLSKEGVECEVINMRTIRPMDMETIEASVM IRPMDMETIEASVMKTNHLVTVEGGWPQFG R T I M K T 1 1 0 1 0 0 2 0 0 2 0 1 3 0 1 1 2 0 0 1 0 0 16 1 1850.894 P11177 P11177 270 285 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 3 0.0067704 60.768 By matching By MS/MS 5.5 0.5 1 1 1 1 5740100 562870 0 5177200 13246 518 13922 57531;57532 48052 48052 1 450930 0 774570 TIRYPDPLIK VGTKGIPHLVTHDARTIRYPDPLIKVNDTI THDARTIRYPDPLIKVNDTIQIDLETGKIT R T I I K V 0 1 0 1 0 0 0 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 10 1 1214.7023 P62701;Q8TD47 P62701 146 155 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2;3 0.0029747 137.95 By MS/MS By matching 5.88 0.927 1 1 4 2 6 2 58992000 0 56396000 2596200 13247 1029 13923 57533;57534;57535;57536;57537;57538;57539;57540 48053;48054;48055;48056;48057 48055 5 0 21454000 388420 TISALAIAALAEAATPYGIESFDSVLKPLWK EIIEHGLVDEQQKVRTISALAIAALAEAAT YGIESFDSVLKPLWKGIRQHRGKGLAAFLK R T I W K G 7 0 0 1 0 0 2 1 0 3 4 2 0 1 2 3 2 1 1 1 0 0 31 1 3245.7588 O75533 O75533 703 733 SF3B1 Splicing factor 3B subunit 1 yes yes 3;4 4.1755E-12 68.942 By MS/MS 2 0 2 2 9333400 0 0 9333400 13248 270 13924 57541;57542 48058;48059 48059 2 0 0 2109200 TISHVIIGLK LTPCETENPMGGYGKTISHVIIGLKTAKGT GGYGKTISHVIIGLKTAKGTKQLKLDPSIF K T I L K T 0 0 0 0 0 0 0 1 1 3 1 1 0 0 0 1 1 0 0 1 0 0 10 0 1079.6703 Q9Y265 Q9Y265 153 162 RUVBL1 RuvB-like 1 yes yes 2 0.00022398 122.19 By MS/MS 4 0.816 1 1 1 3 77150000 0 0 77150000 13249 2234 13925 57543;57544;57545 48060;48061 48060 2 0 0 12487000 TISLVIR EQVRSLSAIYLEKLKTISLVIRGTQGAEEV AIYLEKLKTISLVIRGTQGAEEVLRAHEEQ K T I I R G 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 7 0 800.51199 Q15149 Q15149 1227 1233 PLEC Plectin yes yes 2 0.011521 118.01 By matching By MS/MS By MS/MS 1 0 3 1 1 1 21696000 951170 7034000 13711000 13250 1348 13926 57546;57547;57548 48062;48063 48062 2 951170 3438100 2954300 TISQEFLTPGK RRNMVVDDDSPEMYKTISQEFLTPGKLEIN EMYKTISQEFLTPGKLEINFEELLKQKMEE K T I G K L 0 0 0 0 0 1 1 1 0 1 1 1 0 1 1 1 2 0 0 0 0 0 11 0 1219.6449 Q0ZGT2 Q0ZGT2 363 373 NEXN Nexilin yes yes 2 0.025272 81.263 By MS/MS 3 0 1 1 2687700 0 2687700 0 13251 1192 13927 57549 48064 48064 1 0 1145800 0 TITLEVEPSDTIENVK ______________________________ ITLEVEPSDTIENVKAKIQDKEGIPPDQQR K T I V K A 0 0 1 1 0 0 3 0 0 2 1 1 0 0 1 1 3 0 0 2 0 0 16 0 1786.92 P62987;P62979;P0CG47;P0CG48 P62987 12 27 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2;3 4.2327E-75 248.41 By MS/MS By MS/MS By MS/MS 6.08 2.74 3 2 3 2 3 5 7 3 3 5 12 9 15 3543200000 504260000 293900000 2745100000 13252 500 13928 57550;57551;57552;57553;57554;57555;57556;57557;57558;57559;57560;57561;57562;57563;57564;57565;57566;57567;57568;57569;57570;57571;57572;57573;57574;57575;57576;57577;57578;57579;57580;57581;57582;57583;57584;57585 48065;48066;48067;48068;48069;48070;48071;48072;48073;48074;48075;48076;48077;48078;48079;48080;48081;48082;48083;48084;48085;48086;48087;48088;48089;48090;48091;48092;48093;48094;48095;48096;48097;48098;48099;48100;48101;48102 48082 38 518570000 405650000 570060000 TITLEVEPSDTIENVKAK ______________________________ LEVEPSDTIENVKAKIQDKEGIPPDQQRLI K T I A K I 1 0 1 1 0 0 3 0 0 2 1 2 0 0 1 1 3 0 0 2 0 0 18 1 1986.0521 P62987;P62979;P0CG47;P0CG48 P62987 12 29 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 3 0.00010195 95.767 By MS/MS By MS/MS 7 0 2 1 1 14269000 0 2677900 11591000 13253 500 13929 57586;57587 48103;48104 48104 2 0 1537700 2056700 TITSSYYR IKLQIWDTAGQERFRTITSSYYRGAHGIIV AGQERFRTITSSYYRGAHGIIVVYDVTDQE R T I Y R G 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2 2 0 2 0 0 0 8 0 989.48181 P62820;Q9H0U4 P62820 75 82 RAB1A;RAB1B Ras-related protein Rab-1A;Ras-related protein Rab-1B yes no 2 0.0013398 117.17 By matching By MS/MS By MS/MS 8.5 1.5 2 2 1 1 2 21769000 1207100 3947600 16614000 13254 1034 13930 57588;57589;57590;57591 48105;48106;48107 48107 3 2199000 2266700 20144000 TITYQAVPSEVPNEEPK QVSWQPFLDGIFPAKTITYQAVPSEVPNEE TYQAVPSEVPNEEPKVATAYRPPALRNKPI K T I P K V 1 0 1 0 0 1 3 0 0 1 0 1 0 0 3 1 2 0 1 2 0 0 17 0 1900.9418 Q9BY44 Q9BY44 425 441 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 2 6.382E-05 100.04 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 9859800 0 4253900 5606000 13255 1932 13931 57592;57593;57594 48108;48109 48108 2 0 1634500 1087300 TIVEELLADSEFRR ADFYHSRIPKKQRKRTIVEELLADSEFRRY RTIVEELLADSEFRRYNRRKYSEIMAEKAA R T I R R Y 1 2 0 1 0 0 3 0 0 1 2 0 0 1 0 1 1 0 0 1 0 0 14 1 1676.8733 Q5QJE6 Q5QJE6 713 726 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 3 7.1101E-05 125.53 By MS/MS 4 1.41 1 1 1 1 1 5 9594700 0 0 9594700 13256 1442 13932 57595;57596;57597;57598;57599 48110 48110 1 0 0 1760900 TIVEEVQDGK LTQYKKEPVTTRQVRTIVEEVQDGKVISSR TRQVRTIVEEVQDGKVISSREQVHQTTR__ R T I G K V 0 0 0 1 0 1 2 1 0 1 0 1 0 0 0 0 1 0 0 2 0 0 10 0 1116.5663 Q04695;CON__Q04695;CON__Q6IFX2 Q04695 410 419 KRT17 Keratin, type I cytoskeletal 17 no no 2 0.00019622 128.38 By MS/MS By MS/MS By MS/MS 4.17 1.52 1 1 1 3 5 1 2 3 7 751510000 10430000 10210000 730870000 + 13257 73;91 13933 57600;57601;57602;57603;57604;57605;57606;57607;57608;57609;57610;57611 48111;48112;48113;48114;48115;48116;48117;48118;48119;48120 48120 9 8274000 3462600 106130000 TIVFVETK LIRLMEEIMSEKENKTIVFVETKRRCDELT MSEKENKTIVFVETKRRCDELTRKMRRDGW K T I T K R 0 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 2 0 0 2 0 0 8 0 935.53278 P17844 P17844 344 351 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 0.021284 83.313 By matching By MS/MS By MS/MS 3.17 1.07 2 2 1 1 1 2 3 86155000 5302700 19662000 61190000 13258 588 13934 57612;57613;57614;57615;57616;57617 48121;48122 48121 2 6389000 8425600 11366000 TIVITSHPGQIVK ALCGFQKPISTLDNRTIVITSHPGQIVKHG NRTIVITSHPGQIVKHGDIKCVLNEGMPIY R T I V K H 0 0 0 0 0 1 0 1 1 3 0 1 0 0 1 1 2 0 0 2 0 0 13 0 1391.8136 P31689 P31689 284 296 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2;3 4.5146E-17 188.49 By MS/MS By MS/MS 5.17 1.34 1 3 4 2 1 1 4 8 275440000 0 62292000 213150000 13259 720 13935 57618;57619;57620;57621;57622;57623;57624;57625;57626;57627;57628;57629 48123;48124;48125;48126;48127;48128 48125 6 0 16560000 31086000 TIVQLENEIYQIK SNWVSLVSKNYEIERTIVQLENEIYQIKQQ ERTIVQLENEIYQIKQQHGEANKENIRQDF R T I I K Q 0 0 1 0 0 2 2 0 0 3 1 1 0 0 0 0 1 0 1 1 0 0 13 0 1589.8665 O75934 O75934 198 210 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2;3 4.4943E-05 158.79 By MS/MS By MS/MS 6.75 0.433 1 3 1 3 96134000 0 15001000 81133000 13260 290 13936 57630;57631;57632;57633 48129;48130;48131;48132 48129 4 0 8613500 13949000 TIVQLENEIYQIKQQHGEANKENIR SNWVSLVSKNYEIERTIVQLENEIYQIKQQ QIKQQHGEANKENIRQDF____________ R T I I R Q 1 1 3 0 0 4 4 1 1 4 1 2 0 0 0 0 1 0 1 1 0 0 25 2 2994.5523 O75934 O75934 198 222 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 6 0.067477 18.403 By MS/MS 3 0 1 1 2445700 0 2445700 0 13261 290 13937 57634 48133 48133 0 0 1042600 0 TIVTDVFQGSMR NALHSALGGTKKKKKTIVTDVFQGSMRIFT KKKTIVTDVFQGSMRIFTKKLPHPDLPAEE K T I M R I 0 1 0 1 0 1 0 1 0 1 0 0 1 1 0 1 2 0 0 2 0 0 12 0 1352.6758 Q53GS9 Q53GS9 343 354 USP39 U4/U6.U5 tri-snRNP-associated protein 2 yes yes 2 6.5916E-08 165.98 By MS/MS 3 0 2 2 48521000 0 0 48521000 13262 1426 13938;13939 57635;57636 48134;48135 48134 631 1 0 0 9410700 TIVYWGIGR LLEYLEKQRNRIGCRTIVYWGIGRNRYQLE NRIGCRTIVYWGIGRNRYQLEIPENFTTRN R T I G R N 0 1 0 0 0 0 0 2 0 2 0 0 0 0 0 0 1 1 1 1 0 0 9 0 1063.5815 P52701 P52701 966 974 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.050572 71.342 By MS/MS 1.5 0.5 1 1 2 5852500 0 0 5852500 13263 911 13940 57637;57638 48136 48136 1 0 0 1302700 TIYPLADLLAR NQITLVEDVLAKLCKTIYPLADLLARPLPE KLCKTIYPLADLLARPLPEGVDPLKLEIYL K T I A R P 2 1 0 1 0 0 0 0 0 1 3 0 0 0 1 0 1 0 1 0 0 0 11 0 1244.7129 O95425 O95425 2155 2165 SVIL Supervillin yes yes 2 0.0087484 93.649 By MS/MS 2 0.816 1 1 1 3 7756200 0 0 7756200 13264 325 13941 57639;57640;57641 48137 48137 1 0 0 1656600 TIYTPGSTVLYR LVSLQSGYLFIQTDKTIYTPGSTVLYRIFT TDKTIYTPGSTVLYRIFTVNHKLLPVGRTV K T I Y R I 0 1 0 0 0 0 0 1 0 1 1 0 0 0 1 1 3 0 2 1 0 0 12 0 1369.7242 P01024 P01024 137 148 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 no no 2 0.003749 105.98 By MS/MS By matching 4.5 2.69 1 1 1 1 3 1 29035000 25905000 3129600 0 + 13265 371 13942 57642;57643;57644;57645 48138;48139 48138 2 20894000 1038600 0 TKDGLEVAVLPHNIR AINIGQLVDVKVLEKTKDGLEVAVLPHNIR TKDGLEVAVLPHNIRAFLPTSHLSDHVANG K T K I R A 1 1 1 1 0 0 1 1 1 1 2 1 0 0 1 0 1 0 0 2 0 0 15 1 1660.9261 Q14690 Q14690 647 661 PDCD11 Protein RRP5 homolog yes yes 3 0.028689 50.324 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 23367000 0 6096300 17271000 13266 1314 13943 57646;57647;57648 48140;48141 48141 2 0 2979800 3742900 TKDGVVEITGK SLDVNHFAPDELTVKTKDGVVEITGKHEER LTVKTKDGVVEITGKHEERQDEHGYISRCF K T K G K H 0 0 0 1 0 0 1 2 0 1 0 2 0 0 0 0 2 0 0 2 0 0 11 1 1145.6292 P04792 P04792 113 123 HSPB1 Heat shock protein beta-1 yes yes 2 0.0065554 115.91 By matching By MS/MS 7 0 2 1 1 19408000 0 1306100 18102000 13267 417 13944 57649;57650 48142 48142 1 0 749980 3212100 TKDHTLVQTIAR QNLKFIDPFCKIAAKTKDHTLVQTIARGVF AAKTKDHTLVQTIARGVFEAIVDQSPFVPE K T K A R G 1 1 0 1 0 1 0 0 1 1 1 1 0 0 0 0 3 0 0 1 0 0 12 1 1381.7678 Q14684 Q14684 203 214 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3 0.0045397 84.892 By matching By MS/MS 2.5 0.5 1 1 1 1 15469000 0 5825100 9644400 13268 1313 13945 57651;57652 48143 48143 1 0 2623100 1870500 TKDIEDVFYK NDCRIYVGNLPPDIRTKDIEDVFYKYGAIR PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG R T K Y K Y 0 0 0 2 0 0 1 0 0 1 0 2 0 1 0 0 1 0 1 1 0 0 10 1 1256.6289 Q07955 Q07955 29 38 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2;3 0.007841 101.38 By MS/MS By MS/MS 6 0.577 1 4 1 3 3 267670000 0 43380000 224290000 13269 1179 13946 57653;57654;57655;57656;57657;57658 48144;48145 48144 2 0 14965000 33610000 TKDSLVLNNITR QNLKFIDPFCRIAARTKDSLVLNNITRGIF AARTKDSLVLNNITRGIFETIVEQAPLAIE R T K T R G 0 1 2 1 0 0 0 0 0 1 2 1 0 0 0 1 2 0 0 1 0 0 12 1 1372.7674 P56182 P56182 204 215 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2;3 0.0002574 149.96 By matching By MS/MS By MS/MS 4.17 0.687 1 3 2 1 3 2 71187000 4249500 41961000 24977000 13270 948 13947 57659;57660;57661;57662;57663;57664 48146;48147;48148 48148 3 4903000 13769000 3966600 TKDVEILHLR AALEAKVKDLLTLAKTKDVEILHLRNELRD LTLAKTKDVEILHLRNELRDMRAQLGINED K T K L R N 0 1 0 1 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 1 0 0 10 1 1222.7034 Q69YQ0 Q69YQ0 194 203 SPECC1L Cytospin-A yes yes 3 0.035636 57.019 By MS/MS 2 0 1 1 8564900 0 0 8564900 13271 1469 13948 57665 48149 48149 1 0 0 1935500 TKEAVLLLK ELPLVVEDKVEGYKKTKEAVLLLKKLKAWN VEGYKKTKEAVLLLKKLKAWNDIKKVYASQ K T K L K K 1 0 0 0 0 0 1 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 9 1 1013.6485 P36578 P36578 164 172 RPL4 60S ribosomal protein L4 yes yes 2 0.00071813 143.37 By MS/MS By matching 3.8 1.17 1 1 1 2 4 1 45593000 0 32871000 12722000 13272 762 13949 57666;57667;57668;57669;57670 48150;48151 48151 2 0 9594800 1774500 TKEEVNEWFTK SKRLRGEVGLLFTNRTKEEVNEWFTKYTEM FTNRTKEEVNEWFTKYTEMDYARAGNKAAF R T K T K Y 0 0 1 0 0 0 3 0 0 0 0 2 0 1 0 0 2 1 0 1 0 0 11 1 1409.6827 Q9UKD2 Q9UKD2 108 118 MRTO4 mRNA turnover protein 4 homolog yes yes 2;3 0.0027273 103.69 By matching By MS/MS 6.33 0.471 4 2 2 4 91929000 0 4396000 87533000 13273 2177 13950 57671;57672;57673;57674;57675;57676 48152;48153;48154;48155 48155 4 0 1521800 13767000 TKEGVLYVGSK AAEKTKQGVAEAAGKTKEGVLYVGSKTKEG AAGKTKEGVLYVGSKTKEGVVHGVATVAEK K T K S K T 0 0 0 0 0 0 1 2 0 0 1 2 0 0 0 1 1 0 1 2 0 0 11 1 1179.6499 P37840 P37840 33 43 SNCA Alpha-synuclein no no 2 0.0020831 134.3 By MS/MS By MS/MS By MS/MS 7.12 2.47 1 1 2 2 2 3 3 3 7 6 4 6615700000 2492000000 1386800000 2736900000 13274 769 13951 57677;57678;57679;57680;57681;57682;57683;57684;57685;57686;57687;57688;57689;57690;57691;57692;57693 48156;48157;48158;48159;48160;48161;48162;48163;48164;48165;48166;48167;48168;48169;48170 48166 15 3248000000 5825500000 745070000 TKEGVLYVGSKTK AAEKTKQGVAEAAGKTKEGVLYVGSKTKEG GKTKEGVLYVGSKTKEGVVHGVATVAEKTK K T K T K E 0 0 0 0 0 0 1 2 0 0 1 3 0 0 0 1 2 0 1 2 0 0 13 2 1408.7926 P37840 P37840 33 45 SNCA Alpha-synuclein yes yes 3 0.049265 53.403 By MS/MS By MS/MS By matching 9.6 0.49 2 3 2 2 1 23762000 4870400 6779200 12113000 13275 769 13952 57694;57695;57696;57697;57698 48171;48172 48171 2 7451400 28704000 26492000 TKEGVVHGVATVAEK AAGKTKEGVLYVGSKTKEGVVHGVATVAEK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG K T K E K T 2 0 0 0 0 0 2 2 1 0 0 2 0 0 0 0 2 0 0 4 0 0 15 1 1523.8308 P37840 P37840 44 58 SNCA Alpha-synuclein yes yes 2;3 1.2292E-72 246.96 By MS/MS By MS/MS By MS/MS 6.91 2.9 4 3 3 4 3 4 6 7 11 13 14 16 28 47151000000 857430000 5700600000 40593000000 13276 769 13953 57699;57700;57701;57702;57703;57704;57705;57706;57707;57708;57709;57710;57711;57712;57713;57714;57715;57716;57717;57718;57719;57720;57721;57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734;57735;57736;57737;57738;57739;57740;57741;57742;57743;57744;57745;57746;57747;57748;57749;57750;57751;57752;57753;57754;57755;57756 48173;48174;48175;48176;48177;48178;48179;48180;48181;48182;48183;48184;48185;48186;48187;48188;48189;48190;48191;48192;48193;48194;48195;48196;48197;48198;48199;48200;48201;48202;48203;48204;48205;48206;48207;48208;48209;48210;48211;48212;48213;48214;48215;48216;48217;48218;48219;48220;48221;48222;48223;48224;48225;48226;48227;48228;48229;48230;48231;48232;48233;48234;48235;48236;48237;48238;48239;48240;48241;48242;48243;48244;48245;48246;48247;48248;48249;48250;48251;48252 48247 80 872920000 24554000000 36501000000 TKEGVVHGVATVAEKTK AAGKTKEGVLYVGSKTKEGVVHGVATVAEK EGVVHGVATVAEKTKEQVTNVGGAVVTGVT K T K T K E 2 0 0 0 0 0 2 2 1 0 0 3 0 0 0 0 3 0 0 4 0 0 17 2 1752.9734 P37840 P37840 44 60 SNCA Alpha-synuclein yes yes 3;4 0.00021432 94.387 By MS/MS By MS/MS 8.88 1.05 1 2 2 3 4 4 127080000 0 14111000 112970000 13277 769 13954 57757;57758;57759;57760;57761;57762;57763;57764 48253;48254;48255;48256;48257;48258;48259;48260;48261;48262 48260 9 0 54951000 56689000 TKENDAHLVEVNLNNIK DEPPNPTNVEESLKRTKENDAHLVEVNLNN ENDAHLVEVNLNNIKNIPIPTLKDFAKALE R T K I K N 1 0 4 1 0 0 2 0 1 1 2 2 0 0 0 0 1 0 0 2 0 0 17 1 1950.0171 Q9NYL9 Q9NYL9 193 209 TMOD3 Tropomodulin-3 yes yes 3 2.3923E-06 113.33 By MS/MS 5.5 0.5 1 1 2 12854000 0 12854000 0 13278 2099 13955 57765;57766 48263;48264 48263 2 0 3631500 0 TKENILEEFSK VANNRLFVGSIPKNKTKENILEEFSKVTEG PKNKTKENILEEFSKVTEGLVDVILYHQPD K T K S K V 0 0 1 0 0 0 3 0 0 1 1 2 0 1 0 1 1 0 0 0 0 0 11 1 1336.6874 O43390 O43390 258 268 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 3 0.0024607 89.805 By MS/MS By MS/MS 3 1.29 1 1 2 1 1 4 2 54023000 0 15933000 38090000 13279 195 13956 57767;57768;57769;57770;57771;57772 48265;48266 48266 2 0 6472800 7247100 TKEQILEEFSK VANNRLFVGSIPKSKTKEQILEEFSKVTEG PKSKTKEQILEEFSKVTEGLTDVILYHQPD K T K S K V 0 0 0 0 0 1 3 0 0 1 1 2 0 1 0 1 1 0 0 0 0 0 11 1 1350.7031 O60506 O60506 255 265 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2;3 0.00083812 140.78 By MS/MS By matching 3.57 1.29 2 1 3 1 5 2 35916000 0 23221000 12695000 13280 227 13957 57773;57774;57775;57776;57777;57778;57779 48267;48268;48269 48268 3 0 8842300 1969200 TKEQVTNVGGAVVTGVTAVAQK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG VGGAVVTGVTAVAQKTVEGAGSIAAATGFV K T K Q K T 3 0 1 0 0 2 1 3 0 0 0 2 0 0 0 0 4 0 0 6 0 0 22 1 2156.1801 P37840 P37840 59 80 SNCA Alpha-synuclein yes yes 2;3;4 0 496.42 By MS/MS By MS/MS By MS/MS 7.48 2.79 8 3 3 5 6 8 9 15 21 36 23 45 46 52129000000 8323800000 10496000000 33309000000 13281 769 13958 57780;57781;57782;57783;57784;57785;57786;57787;57788;57789;57790;57791;57792;57793;57794;57795;57796;57797;57798;57799;57800;57801;57802;57803;57804;57805;57806;57807;57808;57809;57810;57811;57812;57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823;57824;57825;57826;57827;57828;57829;57830;57831;57832;57833;57834;57835;57836;57837;57838;57839;57840;57841;57842;57843;57844;57845;57846;57847;57848;57849;57850;57851;57852;57853;57854;57855;57856;57857;57858;57859;57860;57861;57862;57863;57864;57865;57866;57867;57868;57869;57870;57871;57872;57873;57874;57875;57876;57877;57878;57879;57880;57881;57882;57883;57884;57885;57886;57887;57888;57889;57890;57891;57892;57893 48270;48271;48272;48273;48274;48275;48276;48277;48278;48279;48280;48281;48282;48283;48284;48285;48286;48287;48288;48289;48290;48291;48292;48293;48294;48295;48296;48297;48298;48299;48300;48301;48302;48303;48304;48305;48306;48307;48308;48309;48310;48311;48312;48313;48314;48315;48316;48317;48318;48319;48320;48321;48322;48323;48324;48325;48326;48327;48328;48329;48330;48331;48332;48333;48334;48335;48336;48337;48338;48339;48340;48341;48342;48343;48344;48345;48346;48347;48348;48349;48350;48351;48352;48353;48354;48355;48356;48357;48358;48359;48360;48361;48362;48363;48364;48365;48366;48367;48368;48369;48370;48371;48372;48373;48374;48375;48376;48377;48378;48379;48380;48381;48382;48383;48384;48385;48386;48387;48388;48389;48390;48391;48392;48393;48394;48395;48396;48397;48398;48399;48400;48401;48402;48403;48404;48405;48406;48407;48408;48409;48410;48411;48412;48413;48414;48415;48416;48417;48418;48419;48420;48421;48422;48423;48424;48425;48426;48427;48428;48429;48430;48431;48432;48433;48434;48435;48436;48437;48438;48439;48440;48441;48442;48443;48444;48445;48446;48447;48448;48449;48450;48451;48452;48453;48454;48455;48456;48457;48458;48459;48460;48461;48462 48277 191 14508000000 40384000000 29754000000 TKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVK TKEGVVHGVATVAEKTKEQVTNVGGAVVTG VEGAGSIAAATGFVKKDQLGKNEEGAPQEG K T K V K K 7 0 1 0 0 2 2 6 0 1 0 3 0 1 0 1 6 0 0 8 0 0 38 2 3615.9472 P37840 P37840 59 96 SNCA Alpha-synuclein yes yes 3 7.9692E-06 44.915 By MS/MS 8 0 1 1 5332900 0 0 5332900 13282 769 13959 57894 48463 48463 1 0 0 817580 TKFETEQALR LLQIDNARLAADDFRTKFETEQALRLSVEA ADDFRTKFETEQALRLSVEADINGLRRVLD R T K L R L 1 1 0 0 0 1 2 0 0 0 1 1 0 1 0 0 2 0 0 0 0 0 10 1 1221.6354 Q04695;CON__Q04695;CON__P08727;P08727 Q04695 171 180 KRT17;KRT19 Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 2;3 4.5155E-05 136.57 By MS/MS By MS/MS By MS/MS 4.29 1.99 3 2 2 6 5 3 2 1 11 4 9 884840000 94058000 146700000 644090000 + 13283 73;51 13960 57895;57896;57897;57898;57899;57900;57901;57902;57903;57904;57905;57906;57907;57908;57909;57910;57911;57912;57913;57914;57915;57916;57917;57918 48464;48465;48466;48467;48468;48469;48470;48471;48472;48473;48474;48475;48476;48477;48478;48479;48480 48472 17 96278000 38492000 93435000 TKGDFILVGDLMR TECNHYNNIMALYLKTKGDFILVGDLMRSV LKTKGDFILVGDLMRSVLLLAYKPMEGNFE K T K M R S 0 1 0 2 0 0 0 2 0 1 2 1 1 1 0 0 1 0 0 1 0 0 13 1 1463.7806 Q16531 Q16531 916 928 DDB1 DNA damage-binding protein 1 yes yes 3 0.009181 71.879 By MS/MS 2 0 1 1 2791700 0 2791700 0 13284 1387 13961 57919 48481 48481 1 0 1257200 0 TKLQNKEHVIEALR TVARVHIGQVIMSIRTKLQNKEHVIEALRR RTKLQNKEHVIEALRRAKFKFPGRQKIHIS R T K L R R 1 1 1 0 0 1 2 0 1 1 2 2 0 0 0 0 1 0 0 1 0 0 14 2 1677.9526 P27635 P27635 140 153 RPL10 60S ribosomal protein L10 yes yes 4 0.0040006 76.262 By MS/MS 7 0 1 1 3776600 0 3776600 0 13285 678 13962 57920 48482 48482 1 0 2168600 0 TKPHLFYIPGR WNEHNAKIIKYIRTKTKPHLFYIPGRMCPA IRTKTKPHLFYIPGRMCPATQKLIEESQRK K T K G R M 0 1 0 0 0 0 0 1 1 1 1 1 0 1 2 0 1 0 1 0 0 0 11 1 1327.7401 Q9H307 Q9H307 237 247 PNN Pinin yes yes 3 0.0068572 78.692 By MS/MS By MS/MS 2.75 1.56 2 2 2 1 1 3 5 122210000 0 27156000 95057000 13286 1978 13963 57921;57922;57923;57924;57925;57926;57927;57928 48483;48484;48485;48486;48487 48486 5 0 12065000 20610000 TKPIVKPQTSPEYGQGINPISR PLPAVERVKPRIKKKTKPIVKPQTSPEYGQ QTSPEYGQGINPISRLAQIQQAKKEKEPEY K T K S R L 0 1 1 0 0 2 1 2 0 3 0 2 0 0 4 2 2 0 1 1 0 0 22 2 2409.3016 O95793 O95793 269 290 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 3;4 8.7546E-20 129.84 By MS/MS By MS/MS 4.7 1 1 4 2 3 7 3 173640000 0 87385000 86251000 13287 341 13964 57929;57930;57931;57932;57933;57934;57935;57936;57937;57938 48488;48489;48490;48491;48492 48488 5 0 28813000 14038000 TKPPLDHNASATDYK TVASTVAPMYAGDLRTKPPLDHNASATDYK TKPPLDHNASATDYKFSSSIENSDSPVRSI R T K Y K F 2 0 1 2 0 0 0 0 1 0 1 2 0 0 2 1 2 0 1 0 0 0 15 1 1656.8107 O95425 O95425 896 910 SVIL Supervillin yes yes 3 0.029309 50.04 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 9626400 0 2909400 6717000 13288 325 13965 57939;57940;57941 48493;48494 48494 2 0 1381300 1447300 TKPYIQVDIGGGQTK QQDIKFLPFKVVEKKTKPYIQVDIGGGQTK TKPYIQVDIGGGQTKTFAPEEISAMVLTKM K T K T K T 0 0 0 1 0 2 0 3 0 2 0 2 0 0 1 0 2 0 1 1 0 0 15 1 1603.857 P11021 P11021 124 138 HSPA5 78 kDa glucose-regulated protein yes yes 2;3 0.0023914 133.16 By MS/MS By MS/MS 3 0.632 1 3 1 4 1 63328000 0 43748000 19580000 13289 516 13966 57942;57943;57944;57945;57946 48495;48496;48497 48496 3 0 18609000 3797600 TKQDEVNAAWQR AKLIQEQHPEEELIKTKQDEVNAAWQRLKG LIKTKQDEVNAAWQRLKGLALQRQGKLFGA K T K Q R L 2 1 1 1 0 2 1 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 12 1 1444.7059 Q13813 Q13813 228 239 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 4.6775E-11 177.06 By MS/MS By MS/MS 1.2 0.4 4 1 3 2 58391000 0 27751000 30639000 13290 1268 13967 57947;57948;57949;57950;57951 48498;48499;48500;48501 48498 4 0 13466000 6601700 TKTEISEMNR ELQSLAGKHGDDLRRTKTEISEMNRNISRL DDLRRTKTEISEMNRNISRLQAEIEGLKGQ R T K N R N 0 1 1 0 0 0 2 0 0 1 0 1 1 0 0 1 2 0 0 0 0 0 10 1 1207.5867 CON__P05787;P05787;CON__Q9H552 CON__P05787 303 312 KRT8 Keratin, type II cytoskeletal 8 yes no 2;3 8.4789E-38 211.45 By MS/MS By MS/MS 4.32 1.78 1 2 4 4 2 3 3 10 9 326760000 0 55820000 270940000 + 13291 49 13968 57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963;57964;57965;57966;57967;57968;57969;57970 48502;48503;48504;48505;48506;48507;48508;48509;48510;48511;48512;48513;48514;48515;48516;48517;48518;48519;48520;48521 48518 20 0 20509000 46391000 TKVENGEGTIPVESSDIVPTWDGIR RHYPVFENPKQGKLRTKVENGEGTIPVESS PVESSDIVPTWDGIRLGERLRTMSCSDKIL R T K I R L 0 1 1 2 0 0 3 3 0 3 0 1 0 0 2 2 3 1 0 3 0 0 25 1 2698.345 P55265 P55265 1002 1026 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 3 4.1853E-16 101.59 By MS/MS 2 0 1 1 3394200 0 3394200 0 13292 941 13969 57971 48522 48522 1 0 1528400 0 TKVEPYSLTAQQSSLIR GGPSRAGSPRRTSKKTKVEPYSLTAQQSSL VEPYSLTAQQSSLIREDKSNAKLWNEVLAS K T K I R E 1 1 0 0 0 2 1 0 0 1 2 1 0 0 1 3 2 0 1 1 0 0 17 1 1920.0316 Q96T88 Q96T88 669 685 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 3 5.2066E-06 108.25 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 11721000 0 4987500 6733900 13293 1841 13970 57972;57973 48523;48524 48523 2 0 2245900 1306100 TKYEHELALR ILQIDNARLAADDFRTKYEHELALRQTVEA ADDFRTKYEHELALRQTVEADVNGLRRVLD R T K L R Q 1 1 0 0 0 0 2 0 1 0 2 1 0 0 0 0 1 0 1 0 0 0 10 1 1258.667 CON__P08779;P08779 CON__P08779 204 213 KRT16 Keratin, type I cytoskeletal 16 yes no 2;3 2.6188E-05 145.46 By MS/MS By MS/MS By MS/MS 5.57 2.79 2 2 2 3 3 2 2 2 3 2 10 3 10 1292800000 574420000 18012000 700410000 + 13294 53 13971 57974;57975;57976;57977;57978;57979;57980;57981;57982;57983;57984;57985;57986;57987;57988;57989;57990;57991;57992;57993;57994;57995;57996 48525;48526;48527;48528;48529;48530;48531;48532;48533;48534;48535;48536;48537;48538 48531 14 514190000 5183900 537770000 TKYETELNLR LLQIDNARLAADDFRTKYETELNLRMSVEA ADDFRTKYETELNLRMSVEADINGLRRVLD R T K L R M 0 1 1 0 0 0 2 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 10 1 1265.6616 CON__P02533;P02533;CON__Q6IFX2 CON__P02533 202 211 KRT14 Keratin, type I cytoskeletal 14 no no 2;3 4.0622E-38 191.85 By MS/MS By MS/MS 4.5 2.68 2 4 4 3 3 1 2 2 1 15 7 767980000 627550000 0 140430000 + 13295 35;91 13972 57997;57998;57999;58000;58001;58002;58003;58004;58005;58006;58007;58008;58009;58010;58011;58012;58013;58014;58015;58016;58017;58018 48539;48540;48541;48542;48543;48544;48545;48546;48547;48548;48549;48550;48551;48552 48547 14 570870000 0 23279000 TKYPTQSGKPPLLVSAPSK LRHLLSQPLFTESQKTKYPTQSGKPPLLVS TQSGKPPLLVSAPSKSESALSCLSKQKKKK K T K S K S 1 0 0 0 0 1 0 1 0 0 2 3 0 0 4 3 2 0 1 1 0 0 19 2 1998.115 Q9GZR7 Q9GZR7 807 825 DDX24 ATP-dependent RNA helicase DDX24 yes yes 3;4 0.0015718 66.536 By MS/MS 2 0 2 2 26573000 0 0 26573000 13296 1952 13973 58019;58020 48553;48554 48554 2 0 0 6005000 TLAESALQLLYTAK TLSHPQQMALLDQTKTLAESALQLLYTAKE KTLAESALQLLYTAKEAGGNPKQAAHTQEA K T L A K E 3 0 0 0 0 1 1 0 0 0 4 1 0 0 0 1 2 0 1 0 0 0 14 0 1520.845 Q9Y490 Q9Y490 1767 1780 TLN1 Talin-1 yes yes 2 0.00044664 121.08 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 9001200 123820 2389300 6488100 13297 2284 13974 58021;58022;58023;58024 48555;48556;48557 48555 3 123820 1132000 1398000 TLAFLIPAVELIVK EGRDLLAAAKTGSGKTLAFLIPAVELIVKL KTLAFLIPAVELIVKLRFMPRNGTGVLILS K T L V K L 2 0 0 0 0 0 1 0 0 2 3 1 0 1 1 0 1 0 0 2 0 0 14 0 1525.9484 Q9NVP1 Q9NVP1 230 243 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2;3 0.0012257 108.35 By MS/MS By MS/MS 2.71 1.03 1 2 2 2 2 5 42122000 0 901030 41221000 13298 2069 13975 58025;58026;58027;58028;58029;58030;58031 48558;48559;48560;48561;48562;48563;48564 48562 7 0 358730 8038600 TLAFLVPVLEALYR QGKDVLGAAKTGSGKTLAFLVPVLEALYRL KTLAFLVPVLEALYRLQWTSTDGLGVLIIS K T L Y R L 2 1 0 0 0 0 1 0 0 0 4 0 0 1 1 0 1 0 1 2 0 0 14 0 1603.9338 Q13206 Q13206 120 133 DDX10 Probable ATP-dependent RNA helicase DDX10 yes yes 2;3 0.00014037 113.99 By MS/MS 3 0.816 2 2 2 6 10533000 0 0 10533000 13299 1230 13976 58032;58033;58034;58035;58036;58037 48565;48566 48565 2 0 0 2317300 TLAFSIPILMQLK HGRELLASAPTGSGKTLAFSIPILMQLKQP GKTLAFSIPILMQLKQPANKGFRALIISPT K T L L K Q 1 0 0 0 0 1 0 0 0 2 3 1 1 1 1 1 1 0 0 0 0 0 13 0 1473.8629 Q9Y2R4 Q9Y2R4 216 228 DDX52 Probable ATP-dependent RNA helicase DDX52 yes yes 2 0.0064591 96.342 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 28155000 0 1144200 27011000 13300 2246 13977 58038;58039;58040 48567;48568 48568 2 0 379720 5171000 TLAFVIPVVQALLSR RPSDLCVSAPTGSGKTLAFVIPVVQALLSR TLAFVIPVVQALLSRVVCHIRALVVLPTKE K T L S R V 2 1 0 0 0 1 0 0 0 1 3 0 0 1 1 1 1 0 0 3 0 0 15 0 1625.9869 Q8N8A6 Q8N8A6 263 277 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2;3 0.022938 57.836 By MS/MS 3.33 0.471 2 1 3 3388000 0 0 3388000 13301 1615 13978 58041;58042;58043 48569;48570 48570 2 0 0 640940 TLAGGPMISIYDAETEQLR SFQDRGPEEQLRAARTLAGGPMISIYDAET GPMISIYDAETEQLRIGPYSWTPFPHVDFW R T L L R I 2 1 0 1 0 1 2 2 0 2 2 0 1 0 1 1 2 0 1 0 0 0 19 0 2064.0198 Q96AB6 Q96AB6 208 226 NTAN1 Protein N-terminal asparagine amidohydrolase yes yes 2 0.0033884 68.44 By MS/MS By MS/MS 2.8 0.748 2 2 1 2 3 13932000 5914500 8017300 0 13302 1749 13979 58044;58045;58046;58047;58048 48571;48572;48573 48571 3 6946800 3371300 0 TLAGLPLLVAYK EAAQGVKILGKDLEKTLAGLPLLVAYKEDE LEKTLAGLPLLVAYKEDEIPVLKDELIHEL K T L Y K E 2 0 0 0 0 0 0 1 0 0 4 1 0 0 1 0 1 0 1 1 0 0 12 0 1257.7697 O60841 O60841 941 952 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.028947 78.816 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 10785000 0 1213700 9571700 13303 236 13980 58049;58050;58051 48574;48575;48576 48575 3 0 593260 2113900 TLAGLPLLVAYKEDEIPVLK EAAQGVKILGKDLEKTLAGLPLLVAYKEDE PLLVAYKEDEIPVLKDELIHELKQTLNAIK K T L L K D 2 0 0 1 0 0 2 1 0 1 5 2 0 0 2 0 1 0 1 2 0 0 20 1 2181.2661 O60841 O60841 941 960 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.0020922 58.49 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 10583000 0 1674100 8909100 13304 236 13981 58052;58053;58054 48577;48578 48578 2 0 753880 1933100 TLAGLPLLVAYKEDEIPVLKDELIHELK EAAQGVKILGKDLEKTLAGLPLLVAYKEDE DEIPVLKDELIHELKQTLNAIKLEEKGVYV K T L L K Q 2 0 0 2 0 0 4 1 1 2 7 3 0 0 2 0 1 0 1 2 0 0 28 2 3158.7843 O60841 O60841 941 968 EIF5B Eukaryotic translation initiation factor 5B yes yes 4;5 5.8353E-07 65.765 By MS/MS 1.5 0.5 2 2 4 24357000 0 0 24357000 13305 236 13982 58055;58056;58057;58058 48579;48580;48581;48582;48583 48581 5 0 0 5437600 TLAGLVVQLLQFQEDAFGK KHYKKYVHADAPTNKTLAGLVVQLLQFQED LVVQLLQFQEDAFGKHVTNPAFTKLPAKCF K T L G K H 2 0 0 1 0 3 1 2 0 0 4 1 0 2 0 0 1 0 0 2 0 0 19 0 2076.1255 Q92922 Q92922 76 94 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 2;3 8.7257E-09 137.84 By MS/MS 2 0 2 2 2332800 0 0 2332800 13306 1731 13983 58059;58060 48584;48585 48585 2 0 0 527160 TLALQQQLQAVR ARERLEQELALEERRTLALQQQLQAVRQAL ERRTLALQQQLQAVRQALTASFASLPVPGT R T L V R Q 2 1 0 0 0 4 0 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 12 0 1367.7885 Q9P0W2 Q9P0W2 245 256 HMG20B SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related yes yes 2 4.8443E-08 168.27 By MS/MS By MS/MS 6 0 2 1 1 10108000 0 3454700 6653600 13307 2118 13984 58061;58062 48586;48587 48587 2 0 1195900 995450 TLASAGGPDNLVLLNPEK YYIHNLVVACEIQVRTLASAGGPDNLVLLN SAGGPDNLVLLNPEKYKAKSRSPGSPVGEG R T L E K Y 2 0 2 1 0 0 1 2 0 0 4 1 0 0 2 1 1 0 0 1 0 0 18 0 1807.968 P35611 P35611 331 348 ADD1 Alpha-adducin yes yes 2 1.4336E-08 129.77 By matching By MS/MS 2.33 0.471 2 1 1 2 12410000 0 1222900 11187000 13308 755 13985 58063;58064;58065 48588;48589 48588 2 0 550700 2339800 TLATDILMGVLK LERYGVIILDEAHERTLATDILMGVLKEVV HERTLATDILMGVLKEVVRQRSDLKVIVMS R T L L K E 1 0 0 1 0 0 0 1 0 1 3 1 1 0 0 0 2 0 0 1 0 0 12 0 1273.7316 O43143 O43143 266 277 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0015867 111.61 By MS/MS By MS/MS By MS/MS 3.59 1.91 2 3 4 4 2 1 1 1 10 6 197990000 2927600 111610000 83450000 13309 186 13986;13987 58066;58067;58068;58069;58070;58071;58072;58073;58074;58075;58076;58077;58078;58079;58080;58081;58082 48590;48591;48592;48593;48594;48595;48596;48597;48598;48599;48600;48601;48602;48603;48604 48594 79 15 2284100 48080000 16060000 TLATLSENNMEAK AEWQPGETLRGTAERTLATLSENNMEAKFL ERTLATLSENNMEAKFLGNAPCGHYTFKFP R T L A K F 2 0 2 0 0 0 2 0 0 0 2 1 1 0 0 1 2 0 0 0 0 0 13 0 1420.6868 Q9H2W6 Q9H2W6 191 203 MRPL46 39S ribosomal protein L46, mitochondrial yes yes 2 7.5593E-13 185.08 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 35255000 0 8109100 27146000 13310 1977 13988 58083;58084;58085 48605;48606;48607 48605 3 0 4656300 4483300 TLAVSGLGVVGR STECTLILTEGDSAKTLAVSGLGVVGRDKY SAKTLAVSGLGVVGRDKYGVFPLRGKILNV K T L G R D 1 1 0 0 0 0 0 3 0 0 2 0 0 0 0 1 1 0 0 3 0 0 12 0 1127.6663 P11388 P11388 467 478 TOP2A DNA topoisomerase 2-alpha yes yes 2 5.3053E-05 145.72 By MS/MS By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 240260000 11066000 28064000 201130000 13311 524 13989 58086;58087;58088;58089 48608;48609;48610;48611 48609 4 11066000 13717000 43734000 TLAYLLPAIVHINHQPYLER SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ LPAIVHINHQPYLERGDGPICLVLAPTREL K T L E R G 2 1 1 0 0 1 1 0 2 2 4 0 0 0 2 0 1 0 2 1 0 0 20 0 2360.3005 Q92841 Q92841 222 241 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2;3;4 4.7384E-23 184.03 By MS/MS By MS/MS 3.56 1.54 1 3 5 3 2 1 1 4 12 366040000 0 48609000 317430000 13312 1725 13990 58090;58091;58092;58093;58094;58095;58096;58097;58098;58099;58100;58101;58102;58103;58104;58105 48612;48613;48614;48615;48616;48617;48618;48619;48620;48621;48622;48623;48624;48625;48626;48627;48628;48629 48619 16 0 20283000 61281000 TLDDDVFMPLYPK NTQVYLKALLLRMRRTLDDDVFMPLYPKNV RRTLDDDVFMPLYPKNVLENKNSGPYLFFQ R T L P K N 0 0 0 3 0 0 0 0 0 0 2 1 1 1 2 0 1 0 1 1 0 0 13 0 1552.7483 Q9Y5B6 Q9Y5B6 743 755 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 0.015206 82.749 By MS/MS 2 0 1 1 3381600 0 0 3381600 13313 2295 13991 58106 48630 48630 1 0 0 764170 TLDELGIHLTK ILAQVVGDVDTSLPRTLDELGIHLTKEELK SLPRTLDELGIHLTKEELKLNIRPLLRLVC R T L T K E 0 0 0 1 0 0 1 1 1 1 3 1 0 0 0 0 2 0 0 0 0 0 11 0 1238.6871 Q15029 Q15029 395 405 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 3 0.033322 54.65 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 37503000 0 3670500 33832000 13314 1335 13992 58107;58108;58109;58110 48631;48632;48633 48632 3 0 1652900 7318800 TLDELSQGTTTVK VSARDLFRAQLISRKTLDELSQGTTTVKEV RKTLDELSQGTTTVKEVAEMDSVKRSLEGG K T L V K E 0 0 0 1 0 1 1 1 0 0 2 1 0 0 0 1 4 0 0 1 0 0 13 0 1391.7144 P58107 P58107 1543 1555 EPPK1 Epiplakin yes yes 2 0.00030053 130.01 By MS/MS 1 0 1 1 7762200 0 7762200 0 13315 958 13993 58111 48634 48634 1 0 3794100 0 TLDGIFSEQVAMGYSHSLVIAR GDHKPKSSTAAQEVKTLDGIFSEQVAMGYS EQVAMGYSHSLVIARDESETEKEKIKKLPE K T L A R D 2 1 0 1 0 1 1 2 1 2 2 0 1 1 0 3 1 0 1 2 0 0 22 0 2393.2049 Q9P258 Q9P258 480 501 RCC2 Protein RCC2 yes yes 3 1.5331E-19 124.2 By MS/MS 3.5 0.5 1 1 2 18474000 0 0 18474000 13316 2120 13994 58112;58113 48635;48636 48636 2 0 0 3182600 TLDLPIYVTR HIKYAVTTGDHGIIRTLDLPIYVTRVKGNN HGIIRTLDLPIYVTRVKGNNVYCLDRECRP R T L T R V 0 1 0 1 0 0 0 0 0 1 2 0 0 0 1 0 2 0 1 1 0 0 10 0 1189.6707 P53621 P53621 563 572 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.020643 82.645 By MS/MS 1.5 0.5 1 1 2 12246000 0 12246000 0 13317 922 13995 58114;58115 48637 48637 1 0 5564200 0 TLDVVLEEHLK QFLPLIRLLESKYPRTLDVVLEEHLKEIAD KYPRTLDVVLEEHLKEIADLKKQELFHQFV R T L L K E 0 0 0 1 0 0 2 0 1 0 3 1 0 0 0 0 1 0 0 2 0 0 11 0 1294.7133 Q9H583 Q9H583 439 449 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2;3 0.0063905 98.249 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 28873000 0 1588600 27284000 13318 1984 13996 58116;58117;58118;58119 48638;48639;48640 48640 3 0 776460 5900700 TLEEEAKTHEAQIQEMR ELRSKREQEVNILKKTLEEEAKTHEAQIQE EEEAKTHEAQIQEMRQKHSQAVEELAEQLE K T L M R Q 2 1 0 0 0 2 5 0 1 1 1 1 1 0 0 0 2 0 0 0 0 0 17 1 2041.9739 P35579 P35579 1175 1191 MYH9 Myosin-9 yes yes 3;4 1.8141E-06 126.91 By MS/MS 1.4 0.49 3 2 5 61434000 0 61434000 0 13319 752 13997;13998 58120;58121;58122;58123;58124 48641;48642;48643 48642 363 3 0 29890000 0 TLEEILLER DATDKVNKVGEIHVKTLEEILLERASQKRG GEIHVKTLEEILLERASQKRGELQTKLKTE K T L E R A 0 1 0 0 0 0 3 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1114.6234 O75152 O75152 360 368 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 0.00037781 138.1 By MS/MS 2 0 1 1 11672000 0 0 11672000 13320 244 13999 58125 48644 48644 1 0 0 2637600 TLEEKEQEEAR REQSRFYGDLMEKRRTLEEKEQEEARLRKL EKRRTLEEKEQEEARLRKLRKKEAKQRWDD R T L A R L 1 1 0 0 0 1 5 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 11 1 1360.647 Q9BUQ8 Q9BUQ8 329 339 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2;3 0.0010882 111.06 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 11834000 0 6591400 5242300 13321 1909 14000 58126;58127;58128;58129 48645;48646;48647;48648 48645 4 0 2968200 1036000 TLEELDPESR EYPEWLFEMNLGPPKTLEELDPESREYWRR LGPPKTLEELDPESREYWRRLRKQNIWRHN K T L S R E 0 1 0 1 0 0 3 0 0 0 2 0 0 0 1 1 1 0 0 0 0 0 10 0 1187.567 Q6P161 Q6P161 106 115 MRPL54 39S ribosomal protein L54, mitochondrial yes yes 2 0.0064959 94.692 By MS/MS 9 0 1 1 5285700 0 0 5285700 13322 1485 14001 58130 48649 48649 1 0 0 1688500 TLEFPFVNGSAEIMSLVLAESSPGR NEEDTDTPLFIGKVRTLEFPFVNGSAEIMS AEIMSLVLAESSPGRDSTEYFIVFEPRLPL R T L G R D 2 1 1 0 0 0 3 2 0 1 3 0 1 2 2 4 1 0 0 2 0 0 25 0 2650.3313 A6NHR9 A6NHR9 1560 1584 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.00010147 60.991 By MS/MS 1 0 1 1 2309200 0 0 2309200 13323 15 14002 58131 48650 48650 1 0 0 497550 TLEGELHDLR NSKEAALSTALSEKRTLEGELHDLRGQVAK LSEKRTLEGELHDLRGQVAKLEAALGEAKK R T L L R G 0 1 0 1 0 0 2 1 1 0 3 0 0 0 0 0 1 0 0 0 0 0 10 0 1181.6041 P02545 P02545 157 166 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 0.00040444 118.41 By MS/MS 4 1 1 1 2 212830000 0 0 212830000 13324 387 14003 58132;58133 48651;48652 48651 2 0 0 38326000 TLEGELHDLRGQVAK NSKEAALSTALSEKRTLEGELHDLRGQVAK TLEGELHDLRGQVAKLEAALGEAKKQLQDE R T L A K L 1 1 0 1 0 1 2 2 1 0 3 1 0 0 0 0 1 0 0 1 0 0 15 1 1664.8846 P02545 P02545 157 171 LMNA Prelamin-A/C;Lamin-A/C yes yes 3;4 0.0037166 71.344 By MS/MS 3.2 0.748 1 2 2 5 24557000 0 24557000 0 13325 387 14004 58134;58135;58136;58137;58138 48653;48654;48655;48656 48656 4 0 9311100 0 TLELQGLINDLQR TILELRSQLQISNNRTLELQGLINDLQRER NRTLELQGLINDLQRERENLRQEIEKFQKQ R T L Q R E 0 1 1 1 0 2 1 1 0 1 4 0 0 0 0 0 1 0 0 0 0 0 13 0 1511.8308 P15924 P15924 1763 1775 DSP Desmoplakin yes yes 2;3 5.8197E-89 258.15 By MS/MS By MS/MS By MS/MS 3.71 2.54 5 2 2 2 2 1 1 1 1 6 3 8 76455000 35287000 6836800 34331000 13326 572 14005 58139;58140;58141;58142;58143;58144;58145;58146;58147;58148;58149;58150;58151;58152;58153;58154;58155 48657;48658;48659;48660;48661;48662;48663;48664;48665;48666;48667;48668;48669;48670 48658 13 30450000 3341700 7056300 TLENLLASIR AGDSAKMRRYDRGLKTLENLLASIRKGNAI DRGLKTLENLLASIRKGNAIDEADIPPPVA K T L I R K 1 1 1 0 0 0 1 0 0 1 3 0 0 0 0 1 1 0 0 0 0 0 10 0 1128.6503 Q6P1N0 Q6P1N0 172 181 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 0.00067191 132.13 By MS/MS By MS/MS 2 0 2 1 1 7526000 0 2838700 4687200 13327 1488 14006 58156;58157 48671;48672 48671 2 0 1278300 1059200 TLENQSHETLER ETLKSLGEEIQESLKTLENQSHETLERENQ SLKTLENQSHETLERENQECPRSLEEDLET K T L E R E 0 1 1 0 0 1 3 0 1 0 2 0 0 0 0 1 2 0 0 0 0 0 12 0 1455.6954 P48681 P48681 559 570 NES Nestin yes yes 3 0.0031042 86.772 By MS/MS 1 0 1 1 5540200 0 0 5540200 13328 846 14007 58158 48673 48673 1 0 0 1193700 TLESQAVETEK AFFVHDAEIVSSLGKTLESQAVETEKVLDI SLGKTLESQAVETEKVLDIIYQPQAIFRVR K T L E K V 1 0 0 0 0 1 3 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 11 0 1233.6089 Q9NVX2 Q9NVX2 76 86 NLE1 Notchless protein homolog 1 yes yes 2 5.1451E-10 123.88 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 13641000 0 4783500 8857100 13329 2073 14008 58159;58160;58161;58162 48674;48675;48676 48675 3 0 1317800 1235400 TLESQLTPQAVER ISMLVVVPHKLSGMKTLESQLTPQAVERWQ MKTLESQLTPQAVERWQRSMTNRTREVLLP K T L E R W 1 1 0 0 0 2 2 0 0 0 2 0 0 0 1 1 2 0 0 1 0 0 13 0 1470.7678 CON__ENSEMBL:ENSBTAP00000018574 CON__ENSEMBL:ENSBTAP00000018574 365 377 yes yes 2 1.6187E-11 180.88 By MS/MS By MS/MS 8 0 2 1 1 3357000 3357000 0 0 + 13330 27 14009 58163;58164 48677;48678 48677 2 2882100 0 0 TLESSIQGLR CTTGIDGAMTIWDFKTLESSIQGLRIM___ IWDFKTLESSIQGLRIM_____________ K T L L R I 0 1 0 0 0 1 1 1 0 1 2 0 0 0 0 2 1 0 0 0 0 0 10 0 1102.5982 Q92747 Q92747 359 368 ARPC1A Actin-related protein 2/3 complex subunit 1A yes yes 2 0.0035882 101.64 By MS/MS By matching 6 0.816 1 1 1 2 1 20114000 0 18563000 1550800 13331 1719 14010 58165;58166;58167 48679;48680 48679 2 0 5277900 275190 TLESTWEKPQELK EYKTADGKTYYYNNRTLESTWEKPQELKEK NRTLESTWEKPQELKEKEKLEEKIKEPIKE R T L L K E 0 0 0 0 0 1 3 0 0 0 2 2 0 0 1 1 2 1 0 0 0 0 13 1 1587.8144 O14776 O14776 452 464 TCERG1 Transcription elongation regulator 1 yes yes 2 0.0036028 121.61 By MS/MS 1.5 0.5 1 1 2 17420000 0 0 17420000 13332 145 14011 58168;58169 48681 48681 1 0 0 3825500 TLETLIR SMSSDTARTSPVTARTLETLIRLATAHAKA RTSPVTARTLETLIRLATAHAKARMSKTVD R T L I R L 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 7 0 844.50182 P25205 P25205 617 623 MCM3 DNA replication licensing factor MCM3 yes yes 2 0.042119 81.297 By matching By MS/MS By MS/MS 2 0.816 2 2 2 1 2 3 23102000 2735700 4905500 15461000 13333 655 14012 58170;58171;58172;58173;58174;58175 48682;48683;48684 48683 3 2735700 2167000 3306100 TLETVPLER ______________________________ ______________________________ K T L E R K 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 9 0 1056.5815 P22626 P22626 4 12 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2 2.1198E-16 175.44 By MS/MS By MS/MS By MS/MS 5.36 1.92 2 2 2 3 1 1 2 5 4 850790000 39761000 290940000 520100000 13334 632 14013 58176;58177;58178;58179;58180;58181;58182;58183;58184;58185;58186 48685;48686;48687;48688;48689;48690;48691;48692;48693;48694;48695;48696 48686 12 52314000 138330000 76405000 TLFATEDALEVR EYKMGRTKIFIRFPKTLFATEDALEVRRQS FPKTLFATEDALEVRRQSLATKIQAAWRGF K T L V R R 2 1 0 1 0 0 2 0 0 0 2 0 0 1 0 0 2 0 0 1 0 0 12 0 1363.6983 O00159 O00159 722 733 MYO1C Unconventional myosin-Ic yes yes 2 0.010803 93.058 By MS/MS 2 0 1 1 10867000 0 0 10867000 13335 106 14014 58187 48697 48697 1 0 0 2455800 TLFGVLYEVYSSSAGPAVR QLMKEDPELAKSFIKTLFGVLYEVYSSSAG VLYEVYSSSAGPAVRHKCLRAILRIIYFAD K T L V R H 2 1 0 0 0 0 1 2 0 0 2 0 0 1 1 3 1 0 2 3 0 0 19 0 2015.0364 Q14669 Q14669 837 855 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.00012594 80.585 By MS/MS 1 0 1 1 1138400 0 0 1138400 13336 1308 14015 58188 48698 48698 1 0 0 245290 TLFILFR WENFVVLGRSKSSLKTLFILFRNETVDVED GRSKSSLKTLFILFRNETVDVEDIVTWLKR K T L F R N 0 1 0 0 0 0 0 0 0 1 2 0 0 2 0 0 1 0 0 0 0 0 7 0 908.54837 Q9NUD5 Q9NUD5 254 260 ZCCHC3 Zinc finger CCHC domain-containing protein 3 yes yes 2 0.015533 110.54 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 4347700 0 2186400 2161300 13337 2057 14016 58189;58190;58191 48699;48700 48700 2 0 563580 312300 TLFLELIR KGNDKGDESQSQSVRTLFLELIRARRPLVL SQSQSVRTLFLELIRARRPLVLHNGLIDLV R T L I R A 0 1 0 0 0 0 1 0 0 1 3 0 0 1 0 0 1 0 0 0 0 0 8 0 1003.6066 Q96GM8 Q96GM8 175 182 TOE1 Target of EGR1 protein 1 yes yes 2 0.00043146 130.04 By matching By MS/MS 3 0.816 1 1 1 1 2 5682400 343060 0 5339300 13338 1792 14017 58192;58193;58194 48701 48701 1 413350 0 932370 TLFPLIEAK AEVTTKSQIPLSKIKTLFPLIEAKKKDQVT PLSKIKTLFPLIEAKKKDQVTAQEIFQDNH K T L A K K 1 0 0 0 0 0 1 0 0 1 2 1 0 1 1 0 1 0 0 0 0 0 9 0 1030.6063 P13010 P13010 535 543 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.0083398 91.069 By MS/MS By MS/MS 4 1.73 2 2 1 1 1 1 2 6 184280000 0 68381000 115900000 13339 542 14018 58195;58196;58197;58198;58199;58200;58201;58202 48702;48703;48704;48705;48706 48702 5 0 29633000 22606000 TLFSNIVLSGGSTLFK VLVFAIQKSDMDLRRTLFSNIVLSGGSTLF LFSNIVLSGGSTLFKGFGDRLLSEVKKLAP R T L F K G 0 0 1 0 0 0 0 2 0 1 3 1 0 2 0 3 2 0 0 1 0 0 16 0 1682.9243 P61163 P61163 293 308 ACTR1A Alpha-centractin yes yes 2 3.355E-08 164.48 By MS/MS 5 0 1 1 3989000 0 3989000 0 13340 982 14019 58203 48707 48707 1 0 1028200 0 TLFSVINNGHNQK FELEDSNEIFTQLYRTLFSVINNGHNQKVH YRTLFSVINNGHNQKVHMHMVDLMSSIICE R T L Q K V 0 0 3 0 0 1 0 1 1 1 1 1 0 1 0 1 1 0 0 1 0 0 13 0 1470.7579 Q9NTI5 Q9NTI5 160 172 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 3 0.00030911 109.6 By MS/MS 1 0 1 1 20727000 0 0 20727000 13341 2053 14020 58204 48708 48708 1 0 0 4466000 TLFTLEELR DVAYGKTKIFIRTPRTLFTLEELRAQMLIR FIRTPRTLFTLEELRAQMLIRIVLFLQKVW R T L L R A 0 1 0 0 0 0 2 0 0 0 3 0 0 1 0 0 2 0 0 0 0 0 9 0 1120.6128 O94832 O94832 686 694 MYO1D Unconventional myosin-Id yes yes 2 4.5901E-08 163.04 By MS/MS 2 0 1 1 6675300 0 0 6675300 13342 299 14021 58205 48709 48709 1 0 0 1508500 TLGDFAAEYAK VTGKGQDGIGSKAEKTLGDFAAEYAKSNRS KAEKTLGDFAAEYAKSNRSTCKGCMEKIEK K T L A K S 3 0 0 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 11 0 1184.5714 P09874 P09874 109 119 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2 0.0098069 91.584 By MS/MS By MS/MS 3.55 1.92 2 2 2 1 2 1 1 5 6 949400000 0 273010000 676390000 13343 492 14022 58206;58207;58208;58209;58210;58211;58212;58213;58214;58215;58216 48710;48711;48712;48713;48714;48715;48716;48717;48718 48716 7 0 119250000 144410000 TLGDTGFMPPDK ITHLVIRPNGRVALRTLGDTGFMPPDKITR ALRTLGDTGFMPPDKITRS___________ R T L D K I 0 0 0 2 0 0 0 2 0 0 1 1 1 1 2 0 2 0 0 0 0 0 12 0 1277.5962 Q96HS1 Q96HS1 274 285 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.050203 73.067 By matching By MS/MS 6 0 2 1 1 26358000 0 2939300 23418000 13344 1796 14023 58217;58218 48719;48720 48720 2 0 1017500 3503600 TLGEDDPWLDDTAAWIER AKEKRLLNQKLGKIKTLGEDDPWLDDTAAW EDDPWLDDTAAWIERSRQLQKEKDLAEKRA K T L E R S 2 1 0 4 0 0 2 1 0 1 2 0 0 0 1 0 2 2 0 0 0 0 18 0 2101.9593 O43290 O43290 189 206 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 2.0567E-64 228.62 By MS/MS 2 0 1 1 1845200 0 0 1845200 13345 193 14024 58219 48721 48721 1 0 0 416970 TLGEIPTYGLAGNR RKGAIVFNATSEFCRTLGEIPTYGLAGNRE RTLGEIPTYGLAGNREEQEELMDFERDEER R T L N R E 1 1 1 0 0 0 1 3 0 1 2 0 0 0 1 0 2 0 1 0 0 0 14 0 1460.7623 O43290 O43290 562 575 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 2 0.0016134 105.52 By MS/MS 2 0 1 1 6062600 0 0 6062600 13346 193 14025 58220 48722 48722 1 0 0 1370000 TLGFNLESGWGSGR DQLKKHGFKLGPAPKTLGFNLESGWGSGRA KTLGFNLESGWGSGRAGPSYSMPVHAAVQM K T L G R A 0 1 1 0 0 0 1 4 0 0 2 0 0 1 0 2 1 1 0 0 0 0 14 0 1479.7106 Q14527 Q14527 177 190 HLTF Helicase-like transcription factor yes yes 2 0.0032627 95.401 By MS/MS By matching 2.5 0.5 1 1 1 1 5614800 0 2352800 3262000 13347 1303 14026 58221;58222 48723 48723 1 0 1059500 632670 TLGILGLGR KWERKKFMGTELNGKTLGILGLGRIGREVA TELNGKTLGILGLGRIGREVATRMQSFGMK K T L G R I 0 1 0 0 0 0 0 3 0 1 3 0 0 0 0 0 1 0 0 0 0 0 9 0 898.56 O43175 O43175 147 155 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 6.4832E-06 152.63 By MS/MS By MS/MS 4.6 1.2 1 2 2 3 2 40156000 0 18951000 21205000 13348 190 14027 58223;58224;58225;58226;58227 48724;48725 48724 2 0 6363400 3445000 TLGTPDEVVWPGVTSMPDYKPSFPK FPGDSEIDQLFRIFRTLGTPDEVVWPGVTS PGVTSMPDYKPSFPKWARQDFSKVVPPLDE R T L P K W 0 0 0 2 0 0 1 2 0 0 1 2 1 1 5 2 3 1 1 3 0 0 25 1 2747.3517 P24941 P24941 218 242 CDK2 Cyclin-dependent kinase 2 yes yes 3 0.0047932 40.756 By matching By MS/MS 6 0 2 1 1 12254000 0 3061300 9192900 13349 654 14028 58228;58229 48726 48726 1 0 1059700 1375400 TLGVDLVALATR ECNVRVSRSFPFVSKTLGVDLVALATRVIM VSKTLGVDLVALATRVIMGEEVEPVGLMTG K T L T R V 2 1 0 1 0 0 0 1 0 0 3 0 0 0 0 0 2 0 0 2 0 0 12 0 1227.7187 P27708 P27708 1229 1240 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.0010576 117.52 By matching By MS/MS By MS/MS 1 0 3 1 1 1 25655000 396640 15197000 10062000 13350 681 14029 58230;58231;58232 48727;48728 48728 2 396640 7427900 2168000 TLHLQTGNLLNWGR GTDSRAAKALLARARTLHLQTGNLLNWGRL RTLHLQTGNLLNWGRLRKKCPSTHSEELHD R T L G R L 0 1 2 0 0 1 0 2 1 0 4 0 0 0 0 0 2 1 0 0 0 0 14 0 1621.8689 P48507 P48507 17 30 GCLM Glutamate--cysteine ligase regulatory subunit yes yes 3 0.0012877 85.457 By MS/MS By matching 6 0 2 1 1 2733800 0 1830500 903320 13351 843 14030 58233;58234 48729 48729 1 0 633670 135150 TLHPDLGTDKDKEQWK VPVWSGMNVAGVSLKTLHPDLGTDKDKEQW LHPDLGTDKDKEQWKEVHKQVVESAYEVIK K T L W K E 0 0 0 3 0 1 1 1 1 0 2 3 0 0 1 0 2 1 0 0 0 0 16 2 1909.9534 P00338 P00338 213 228 LDHA L-lactate dehydrogenase A chain yes yes 2;4 7.4536E-28 132.14 By matching By MS/MS 6 0 3 1 2 37545000 0 1674800 35870000 13352 356 14031 58235;58236;58237 48730;48731 48731 2 0 579760 5366600 TLHTDILFGLIK LASYSVVMVDEAHERTLHTDILFGLIKDVA HERTLHTDILFGLIKDVARFRPELKVLVAS R T L I K D 0 0 0 1 0 0 0 1 1 2 3 1 0 1 0 0 2 0 0 0 0 0 12 0 1369.7969 O60231 O60231 526 537 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 3 0.0078822 74.962 By MS/MS 2 0.816 1 1 1 3 4195000 0 0 4195000 13353 221 14032 58238;58239;58240 48732 48732 1 0 0 926160 TLIDDDNPPVSFVK GLCRIWDTASGQCLKTLIDDDNPPVSFVKF KTLIDDDNPPVSFVKFSPNGKYILAATLDN K T L V K F 0 0 1 3 0 0 0 0 0 1 1 1 0 1 2 1 1 0 0 2 0 0 14 0 1558.7879 P61964 P61964 208 221 WDR5 WD repeat-containing protein 5 yes yes 2 0.0016408 105.32 By matching By MS/MS 6 0.707 1 2 1 1 3 24490000 0 4128800 20361000 13354 1001 14033 58241;58242;58243;58244 48733;48734 48733 2 0 1429200 2979700 TLIEAGLPQK EPMDTSSVTHTEHYKTLIEAGLPQKVAERL TEHYKTLIEAGLPQKVAERLDEIFQTGLVA K T L Q K V 1 0 0 0 0 1 1 1 0 1 2 1 0 0 1 0 1 0 0 0 0 0 10 0 1068.6179 O43390 O43390 32 41 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.0027861 104.44 By MS/MS By MS/MS 4.25 2.77 1 2 1 3 1 174740000 0 118780000 55958000 13355 195 14034 58245;58246;58247;58248 48735;48736;48737;48738 48738 4 0 53145000 10853000 TLIGFLR EDIDKKHLVLLRDGRTLIGFLRSIDQFANL LVLLRDGRTLIGFLRSIDQFANLVLHQTVE R T L L R S 0 1 0 0 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 0 0 0 7 0 818.50142 O15116 O15116 27 33 LSM1 U6 snRNA-associated Sm-like protein LSm1 yes yes 2 0.021281 100.27 By MS/MS 8 0 1 1 1670600 0 1670600 0 13356 165 14035 58249 48739 48739 1 0 760060 0 TLINAEDPPMVVVR IQAFIRANKARDDYKTLINAEDPPMVVVRK KTLINAEDPPMVVVRKFVHLLDQSDQDFQE K T L V R K 1 1 1 1 0 0 1 0 0 1 1 0 1 0 2 0 1 0 0 3 0 0 14 0 1552.8283 P46940 P46940 857 870 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.00036493 131.83 By MS/MS By MS/MS 1.6 0.49 2 3 3 2 41543000 0 27906000 13637000 13357 835 14036;14037 58250;58251;58252;58253;58254 48740;48741;48742;48743;48744 48741 412 5 0 12674000 3028200 TLITFAGMIPYR RVIEDRDSQLRSQARTLITFAGMIPYRTSG QARTLITFAGMIPYRTSGDTNARLVQMEVL R T L Y R T 1 1 0 0 0 0 0 1 0 2 1 0 1 1 1 0 2 0 1 0 0 0 12 0 1381.7428 Q8N1F7 Q8N1F7 791 802 NUP93 Nuclear pore complex protein Nup93 yes yes 2 6.2926E-33 151.44 By matching By MS/MS 1.75 0.829 2 1 1 1 3 7620000 359210 0 7260800 13358 1599 14038 58255;58256;58257;58258 48745;48746 48746 2 359210 0 1608200 TLIVEPHVIPNR RKDADVEDEDTEEAKTLIVEPHVIPNRGPY EAKTLIVEPHVIPNRGPYPYNQPKRNTIQF K T L N R G 0 1 1 0 0 0 1 0 1 2 1 0 0 0 2 0 1 0 0 2 0 0 12 0 1386.7983 O60306 O60306 776 787 AQR Intron-binding protein aquarius yes yes 3 0.035837 52.247 By MS/MS 1 0 1 1 13216000 0 0 13216000 13359 225 14039 58259 48747 48747 1 0 0 2847700 TLIVTHSNQALNQLFEK VQIISNIYHNFPEQRTLIVTHSNQALNQLF IVTHSNQALNQLFEKIMALDIDERHLLRLG R T L E K I 1 0 2 0 0 2 1 0 1 1 3 1 0 1 0 1 2 0 0 1 0 0 17 0 1955.0476 O60306 O60306 849 865 AQR Intron-binding protein aquarius yes yes 2;3 1.5677E-06 122.01 By MS/MS By MS/MS 2 0.632 1 3 1 3 2 42749000 0 15426000 27323000 13360 225 14040 58260;58261;58262;58263;58264 48748;48749;48750 48748 3 0 6984800 6174600 TLLADQGEIR EDCFFYSLVFDPVQKTLLADQGEIRVGCKY DPVQKTLLADQGEIRVGCKYQAEIPDRLVE K T L I R V 1 1 0 1 0 1 1 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 10 0 1114.5982 O94776 O94776 139 148 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.0081608 91.087 By matching By MS/MS 2.67 0.471 1 2 2 1 47027000 42080000 4947300 0 13361 298 14041 58265;58266;58267 48751 48751 1 50112000 2109000 0 TLLAHAIAGELDLPILK PPRGVLLHGPPGCGKTLLAHAIAGELDLPI LAHAIAGELDLPILKVAAPEIVSGVSGESE K T L L K V 3 0 0 1 0 0 1 1 1 2 5 1 0 0 1 0 1 0 0 0 0 0 17 0 1787.0557 O15381 O15381 312 328 NVL Nuclear valosin-containing protein-like yes yes 3 0.00030703 88.992 By matching By MS/MS 2.5 0.5 1 1 1 1 3750400 0 841050 2909300 13362 180 14042 58268;58269 48752 48752 1 0 378740 564270 TLLAILR REAWASKDATYTSARTLLAILRLSTALARL DATYTSARTLLAILRLSTALARLRMVDVVE R T L L R L 1 1 0 0 0 0 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 0 7 0 798.53272 P33993 P33993 605 611 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.0023965 133.99 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 11254000 0 5751800 5502500 13363 733 14043 58270;58271;58272 48753;48754 48754 2 0 2463800 1067200 TLLCLSLTGPHK GQALRATVVGPDSSKTLLCLSLTGPHKLEE SSKTLLCLSLTGPHKLEEGEVAMGRVVKVT K T L H K L 0 0 0 0 1 0 0 1 1 0 4 1 0 0 1 1 2 0 0 0 0 0 12 0 1338.733 Q14690 Q14690 1215 1226 PDCD11 Protein RRP5 homolog yes yes 3 0.022014 60.301 By MS/MS 1 0 1 1 3687200 0 0 3687200 13364 1314 14044 58273 48755 48755 1 0 0 794480 TLLDIDNTR DLKDQIVDLTVGNNKTLLDIDNTRMTLDDF TVGNNKTLLDIDNTRMTLDDFRIKFEMEQN K T L T R M 0 1 1 2 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 9 0 1059.556 P35527;CON__P35527 P35527 225 233 KRT9 Keratin, type I cytoskeletal 9 yes no 2 1.7078E-17 184.49 By MS/MS By MS/MS By MS/MS 5.41 2.8 3 3 3 5 3 3 3 3 3 3 11 10 11 8505500000 6089700000 320000000 2095900000 + 13365 750 14045 58274;58275;58276;58277;58278;58279;58280;58281;58282;58283;58284;58285;58286;58287;58288;58289;58290;58291;58292;58293;58294;58295;58296;58297;58298;58299;58300;58301;58302;58303;58304;58305 48756;48757;48758;48759;48760;48761;48762;48763;48764;48765;48766;48767;48768;48769;48770;48771;48772;48773;48774;48775;48776;48777;48778;48779;48780;48781;48782;48783;48784;48785;48786;48787;48788;48789;48790;48791;48792;48793;48794;48795;48796;48797;48798;48799;48800;48801;48802;48803;48804;48805 48764 50 5765000000 257300000 565080000 TLLDQHGQYPIWMNQR KDDMKMETDIKRNKKTLLDQHGQYPIWMNQ LLDQHGQYPIWMNQRQRKRLKAKREKRKGK K T L Q R Q 0 1 1 1 0 3 0 1 1 1 2 0 1 0 1 0 1 1 1 0 0 0 16 0 1998.9734 Q9BRT6 Q9BRT6 85 100 LLPH Protein LLP homolog yes yes 3 1.2409E-05 108.71 By MS/MS By MS/MS 7 0 2 1 1 28394000 0 7118500 21276000 13366 1892 14046 58306;58307 48806;48807 48806 2 0 4087500 3775300 TLLDSLR PGALFVQSHLEDLKKTLLDSLRSTSSPAKR SHLEDLKKTLLDSLRSTSSPAKRPRLKCLL K T L L R S 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 1 1 0 0 0 0 0 7 0 816.47052 Q5JTH9 Q5JTH9 820 826 RRP12 RRP12-like protein yes yes 2 0.016333 109.11 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 9359900 0 6755500 2604400 13367 1438 14047 58308;58309;58310 48808;48809;48810 48809 3 0 3104100 588540 TLLEALEQR PATAPSTTEVPPPPRTLLEALEQRMERYQV VPPPPRTLLEALEQRMERYQVAAAQAKSKG R T L Q R M 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 9 0 1071.5924 Q6P1N0 Q6P1N0 347 355 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 0.0041163 98.629 By MS/MS 2 0 1 1 4259100 0 0 4259100 13368 1488 14048 58311 48811 48811 1 0 0 962480 TLLEEEYFR LIPGSQFWDASKTLRTLLEEEYFREKLSDG ASKTLRTLLEEEYFREKLSDGIGVMLPQVL R T L F R E 0 1 0 0 0 0 3 0 0 0 2 0 0 1 0 0 1 0 1 0 0 0 9 0 1198.587 P52701 P52701 636 644 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.00056269 117.1 By MS/MS 2 0.816 1 1 1 3 18284000 0 0 18284000 13369 911 14049 58312;58313;58314 48812 48812 1 0 0 3868100 TLLEGEESR MNTKLALDLEIATYRTLLEGEESRMSGECA EIATYRTLLEGEESRMSGECAPNVSVSVST R T L S R M 0 1 0 0 0 0 3 1 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1032.5088 P04264;CON__P04264 P04264 484 492 KRT1 Keratin, type II cytoskeletal 1 no no 2 1.9815E-16 176.09 By MS/MS By MS/MS By MS/MS 5.5 2.85 3 2 2 3 3 3 3 2 2 3 11 6 9 12050000000 8573000000 347290000 3130100000 + 13370 413 14050 58315;58316;58317;58318;58319;58320;58321;58322;58323;58324;58325;58326;58327;58328;58329;58330;58331;58332;58333;58334;58335;58336;58337;58338;58339;58340 48813;48814;48815;48816;48817;48818;48819;48820;48821;48822;48823;48824;48825;48826;48827;48828;48829;48830;48831;48832;48833;48834;48835;48836;48837;48838;48839;48840;48841;48842;48843;48844;48845 48842 33 7921400000 213390000 777460000 TLLENTAITIGR LHQLVEIINRPNTPKTLLENTAITIGRLGY TPKTLLENTAITIGRLGYVCPQEVAPMLQQ K T L G R L 1 1 1 0 0 0 1 1 0 2 2 0 0 0 0 0 3 0 0 0 0 0 12 0 1300.7351 Q92973 Q92973 774 785 TNPO1 Transportin-1 yes yes 2 0.00082761 120.09 By MS/MS 2 0 1 1 1879700 0 1879700 0 13371 1734 14051 58341 48846 48846 1 0 846460 0 TLLIKTVETR TNLDSLPLVDTHSKRTLLIKTVETRDGQVI THSKRTLLIKTVETRDGQVINETSQHHDDL R T L T R D 0 1 0 0 0 0 1 0 0 1 2 1 0 0 0 0 3 0 0 1 0 0 10 1 1172.7129 P08670 P08670 441 450 VIM Vimentin yes yes 2 0.003761 127.76 By MS/MS 4 0 1 1 12609000 0 12609000 0 13372 476 14052 58342 48847 48847 1 0 4184500 0 TLLIVSHDQGFLDDVCTDIIHLDAQR NAVIWLNNYLQGWRKTLLIVSHDQGFLDDV LDDVCTDIIHLDAQRLHYYRGNYMTFKKMY K T L Q R L 1 1 0 5 1 2 0 1 2 3 4 0 0 1 0 1 2 0 0 2 0 0 26 0 2993.4917 Q8NE71 Q8NE71 500 525 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 3;4 1.7232E-08 82.476 By MS/MS 2 0 2 2 4202300 0 0 4202300 13373 1638 14053 58343;58344 48848;48849 48848 2 0 0 949640 TLLLCGYPNVGK RQHLSRLPTIDPNTRTLLLCGYPNVGKSSF NTRTLLLCGYPNVGKSSFINKVTRADVDVQ R T L G K S 0 0 1 0 1 0 0 2 0 0 3 1 0 0 1 0 1 0 1 1 0 0 12 0 1333.7064 Q9BZE4 Q9BZE4 170 181 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.020194 84.615 By MS/MS 3 0 1 1 8989500 0 0 8989500 13374 1941 14054 58345 48850 48850 1 0 0 1743500 TLLLSLLATEIER TNRGSQLHKYYMKRRTLLLSLLATEIERLI RRTLLLSLLATEIERLITWYNPLSAPELEL R T L E R L 1 1 0 0 0 0 2 0 0 1 5 0 0 0 0 1 2 0 0 0 0 0 13 0 1470.8657 P42356 P42356 1490 1502 PI4KA Phosphatidylinositol 4-kinase alpha yes yes 2 0.00047215 121.29 By MS/MS 1 0 1 1 732140 0 0 732140 13375 801 14055 58346 48851 48851 1 0 0 157750 TLLPHDPTADVFVTPAEEKPIEIQWVKPEPK QQVKDVQKLRKKEPKTLLPHDPTADVFVTP EEKPIEIQWVKPEPKVDLKARKKRIYKRQR K T L P K V 2 0 0 2 0 1 4 0 1 2 2 3 0 1 6 0 3 1 0 3 0 0 31 2 3523.8603 Q8TDN6 Q8TDN6 296 326 BRIX1 Ribosome biogenesis protein BRX1 homolog yes yes 3;4;5 1.721E-20 99.446 By MS/MS By MS/MS 5.38 0.857 1 4 2 1 2 6 110430000 0 10951000 99483000 13376 1663 14056 58347;58348;58349;58350;58351;58352;58353;58354 48852;48853;48854;48855 48854 4 0 2949500 14135000 TLLPVPSFEDVSIPEKPK LSDSWALLPASAGVKTLLPVPSFEDVSIPE PVPSFEDVSIPEKPKLRFIERAPLVPKVRR K T L P K L 0 0 0 1 0 0 2 0 0 1 2 2 0 1 4 2 1 0 0 2 0 0 18 1 1995.0928 Q9NX20 Q9NX20 32 49 MRPL16 39S ribosomal protein L16, mitochondrial yes yes 3 0.0011112 70.942 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 24012000 0 3270700 20741000 13377 2083 14057 58355;58356;58357 48856;48857;48858;48859 48856 4 0 1878100 3585900 TLLTGDGGGEATGSPLAQGK QELNNRLAAEITRLRTLLTGDGGGEATGSP DGGGEATGSPLAQGKDAYELEVLLRVKESE R T L G K D 2 0 0 1 0 1 1 6 0 0 3 1 0 0 1 1 3 0 0 0 0 0 20 0 1828.9167 Q6WCQ1 Q6WCQ1 878 897 MPRIP Myosin phosphatase Rho-interacting protein yes yes 2 3.7152E-57 221.63 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 12936000 0 6144800 6791500 13378 1507 14058 58358;58359;58360 48860;48861 48860 2 0 2827800 1534700 TLLVADPR ASKKEIKDILIQYDRTLLVADPRRCESKKF ILIQYDRTLLVADPRRCESKKFGGPGARAR R T L P R R 1 1 0 1 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 1 0 0 8 0 883.51272 P62249 P62249 118 125 RPS16 40S ribosomal protein S16 yes yes 2 0.026661 79.116 By matching By MS/MS 7.67 0.471 1 2 2 1 183020000 0 98705000 84320000 13379 1010 14059 58361;58362;58363 48862 48862 1 0 46268000 12927000 TLLVNNNR EIRKLDGFPLLRRLKTLLVNNNRICRIGEG PLLRRLKTLLVNNNRICRIGEGLDQALPCL K T L N R I 0 1 3 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 0 8 0 942.52468 P09661 P09661 68 75 SNRPA1 U2 small nuclear ribonucleoprotein A yes yes 2 8.1945E-06 154.11 By MS/MS By matching 7.33 0.471 2 1 1 2 46360000 0 20081000 26279000 13380 491 14060 58364;58365;58366 48863 48863 1 0 11531000 4325200 TLLVYDMNLR RMLSTLSQCEFSMGKTLLVYDMNLREMENY FSMGKTLLVYDMNLREMENYEKIYKEIECS K T L L R E 0 1 1 1 0 0 0 0 0 0 3 0 1 0 0 0 1 0 1 1 0 0 10 0 1236.6536 Q6I9Y2 Q6I9Y2 67 76 THOC7 THO complex subunit 7 homolog yes yes 2 0.0002131 121.96 By MS/MS By MS/MS 7 0 2 1 1 18558000 0 2862400 15696000 13381 1474 14061 58367;58368 48864;48865 48865 2 0 1643600 2785100 TLLYNPFPPTNESDVIR MFCIIDKSLPLPNDKTLLYNPFPPTNESDV LYNPFPPTNESDVIRRRTAHAFKISKIYKP K T L I R R 0 1 2 1 0 0 1 0 0 1 2 0 0 1 3 1 2 0 1 1 0 0 17 0 1975.0051 Q969X6 Q969X6 618 634 CIRH1A Cirhin yes yes 2 1.3381E-06 157.56 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 40398000 0 12922000 27476000 13382 1746 14062 58369;58370;58371 48866;48867;48868 48868 3 0 5542300 5329100 TLMAQSIYGGR RQNISPDKIPWSALKTLMAQSIYGGRVDNE SALKTLMAQSIYGGRVDNEFDQRLLNTFLE K T L G R V 1 1 0 0 0 1 0 2 0 1 1 0 1 0 0 1 1 0 1 0 0 0 11 0 1195.6019 Q14204 Q14204 4245 4255 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00048674 119.62 By MS/MS 1 0 1 1 7349100 0 7349100 0 13383 1292 14063 58372 48869 48869 1 0 3592100 0 TLMIQLLR LMETMKQPFLPGEVKTLMIQLLRGVKHLHD FLPGEVKTLMIQLLRGVKHLHDNWILHRDL K T L L R G 0 1 0 0 0 1 0 0 0 1 3 0 1 0 0 0 1 0 0 0 0 0 8 0 986.59467 P21127;Q9UQ88 P21127 541 548 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 8.1945E-06 154.11 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 18627000 0 1573400 17054000 13384 620 14064 58373;58374;58375;58376 48870;48871;48872;48873 48872 4 0 708520 3723400 TLMNLGGLAVAR TVDLWEGKNMACVQRTLMNLGGLAVARDDG VQRTLMNLGGLAVARDDGLFSGDPNWFPKK R T L A R D 2 1 1 0 0 0 0 2 0 0 3 0 1 0 0 0 1 0 0 1 0 0 12 0 1214.6805 P37802 P37802 128 139 TAGLN2 Transgelin-2 yes yes 2 3.8025E-05 148.94 By MS/MS By MS/MS By MS/MS 8.14 1.12 3 1 2 1 1 2 4 92182000 10231000 25151000 56799000 13385 768 14065 58377;58378;58379;58380;58381;58382;58383 48874;48875;48876;48877;48878;48879 48877 6 22050000 14723000 15018000 TLMNTIMQLR TDGSEKDKKGKGGTKTLMNTIMQLRKICNH KGGTKTLMNTIMQLRKICNHPYMFQHIEES K T L L R K 0 1 1 0 0 1 0 0 0 1 2 0 2 0 0 0 2 0 0 0 0 0 10 0 1219.6417 P51531;P51532 P51532 1034 1043 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2 2.8581E-16 176.84 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44145000 0 12631000 31514000 13386 894;893 14066 58384;58385;58386;58387 48880;48881;48882;48883 48882 4 0 6003800 6864800 TLMVDPSQEVQENYNFLLQLQEELLK AMGIRFKSYCSNLVRTLMVDPSQEVQENYN ENYNFLLQLQEELLKELRHGVKICDVYNAV R T L L K E 0 0 2 1 0 4 4 0 0 0 6 1 1 1 1 1 1 0 1 2 0 0 26 0 3120.5689 Q9Y5B9 Q9Y5B9 289 314 SUPT16H FACT complex subunit SPT16 yes yes 3 0.0025025 40.756 By MS/MS 1.5 0.5 1 1 2 30190000 0 0 30190000 13387 2296 14067 58388;58389 48884;48885 48884 2 0 0 6797800 TLNDELEIIEGMK KKVGRKGVITVKDGKTLNDELEIIEGMKFD GKTLNDELEIIEGMKFDRGYISPYFINTSK K T L M K F 0 0 1 1 0 0 3 1 0 2 2 1 1 0 0 0 1 0 0 0 0 0 13 0 1503.7491 P10809 P10809 206 218 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.00027751 133.79 By MS/MS By matching By MS/MS 3.83 1.21 1 1 3 1 1 1 4 55520000 11211000 1872600 42436000 13388 515 14068 58390;58391;58392;58393;58394;58395 48886;48887;48888;48889 48888 4 8746600 621450 7511000 TLNDMRQEYEQLIAK VNVEINVAPGKDLTKTLNDMRQEYEQLIAK TLNDMRQEYEQLIAKNRKDIENQYETQITQ K T L A K N 1 1 1 1 0 2 2 0 0 1 2 1 1 0 0 0 1 0 1 0 0 0 15 1 1850.9196 P35527;CON__P35527 P35527 322 336 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 4.9327E-24 197.38 By MS/MS By MS/MS By MS/MS 5.43 3.3 13 4 4 6 4 2 6 7 6 9 32 8 21 2824100000 2250500000 53997000 519590000 + 13389 750 14069;14070 58396;58397;58398;58399;58400;58401;58402;58403;58404;58405;58406;58407;58408;58409;58410;58411;58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430;58431;58432;58433;58434;58435;58436;58437;58438;58439;58440;58441;58442;58443;58444;58445;58446;58447;58448;58449;58450;58451;58452;58453;58454;58455;58456 48890;48891;48892;48893;48894;48895;48896;48897;48898;48899;48900;48901;48902;48903;48904;48905;48906;48907;48908;48909;48910;48911;48912;48913;48914;48915;48916;48917;48918;48919;48920;48921;48922;48923;48924;48925;48926;48927;48928;48929;48930;48931;48932;48933;48934 48907 343 45 1922800000 54818000 121250000 TLNEWDSR VMTGANGEVSFINIKTLNEWDSRHCNGVDW VSFINIKTLNEWDSRHCNGVDWRQKLDSQR K T L S R H 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 8 0 1019.4672 O15371 O15371 395 402 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 2 0.021422 83.206 By MS/MS 3 0 1 1 4640600 0 0 4640600 13390 178 14071 58457 48935 48935 1 0 0 900050 TLNGGSDAQDGNQPQHNGESNEDSKDNHEASTK KGPNKKLEKEQTGSKTLNGGSDAQDGNQPQ ESNEDSKDNHEASTKKKPSSEERETEISLK K T L T K K 2 0 5 4 0 3 3 4 2 0 1 2 0 0 1 4 2 0 0 0 0 0 33 1 3480.4646 O75475 O75475 477 509 PSIP1 PC4 and SFRS1-interacting protein yes yes 5 8.2041E-07 51.9 By MS/MS 3 0 1 1 4188000 0 0 4188000 13391 262 14072 58458 48936 48936 1 0 0 812270 TLNHQYDYTFDWTMLK PDYMYLRQLFRILFRTLNHQYDYTFDWTML LNHQYDYTFDWTMLKQKAAQQAASSSGQGQ R T L L K Q 0 0 1 2 0 1 0 0 1 0 2 1 1 1 0 0 3 1 2 0 0 0 16 0 2074.9459 P48729;Q8N752 P48729 287 302 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 3 0.00088751 81.428 By matching By MS/MS 6 0 2 1 1 8830400 0 2700100 6130300 13392 847 14073 58459;58460 48937 48937 1 0 934680 917150 TLNNKFASFIDK PEIQNVKAQEREQIKTLNNKFASFIDKVRF QIKTLNNKFASFIDKVRFLEQQNQVLQTKW K T L D K V 1 0 2 1 0 0 0 0 0 1 1 2 0 2 0 1 1 0 0 0 0 0 12 1 1396.7351 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__Q9H552;CON__Q9DCV7;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 190 201 KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT84;KRT76;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 2;3 0.00010102 156.14 By MS/MS By matching By matching 4.58 3.2 3 2 1 1 1 1 1 1 1 10 1 1 56352000 47328000 1237200 7787200 + 13393 65;66;49;68;37;47;58;69;71;1135;54;86;92 14074 58461;58462;58463;58464;58465;58466;58467;58468;58469;58470;58471;58472 48938;48939;48940 48939 3 47012000 604730 1759700 TLNNKFASFIDKVR PEIQNVKAQEREQIKTLNNKFASFIDKVRF KTLNNKFASFIDKVRFLEQQNQVLQTKWEL K T L V R F 1 1 2 1 0 0 0 0 0 1 1 2 0 2 0 1 1 0 0 1 0 0 14 2 1651.9046 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__Q9DCV7;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;Q01546;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 190 203 KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT84;KRT76;KRT2 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal no no 3;4 0.00024283 113.65 By MS/MS 7.5 2.18 1 1 1 1 2 2 8 64025000 64025000 0 0 + 13394 65;66;49;68;37;47;58;69;71;1135;54;86;92 14075 58473;58474;58475;58476;58477;58478;58479;58480 48941;48942;48943;48944;48945 48944 5 55705000 0 0 TLNNQFASFIDK PQFQVVRTQETQEIRTLNNQFASFIDKVRF EIRTLNNQFASFIDKVRFLEQQNKVLETKW R T L D K V 1 0 2 1 0 1 0 0 0 1 1 1 0 2 0 1 1 0 0 0 0 0 12 0 1396.6987 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 117 128 KRT78 Keratin, type II cytoskeletal 78 yes no 2 2.3445E-05 152.07 By MS/MS By MS/MS By MS/MS 4.79 3.05 2 2 2 2 1 1 1 1 2 8 1 5 122430000 93237000 1406900 27788000 + 13395 94 14076 58481;58482;58483;58484;58485;58486;58487;58488;58489;58490;58491;58492;58493;58494 48946;48947;48948;48949;48950;48951;48952;48953;48954;48955;48956;48957 48952 11 84569000 687650 8793900 TLNQPDSQLQLTTGNGLFLSEGLK IPEAQIHEGFQELLRTLNQPDSQLQLTTGN QLTTGNGLFLSEGLKLVDKFLEDVKKLYHS R T L L K L 0 0 2 1 0 3 1 3 0 0 6 1 0 1 1 2 3 0 0 0 0 0 24 0 2573.3337 P01009 P01009 126 149 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2;3 1.7957E-24 164.93 By MS/MS 9 0 2 2 14699000 14699000 0 0 13396 367 14077 58495;58496 48958;48959 48959 2 8250600 0 0 TLNVESNFISGAGILR AYALAEMLKENKVLKTLNVESNFISGAGIL LNVESNFISGAGILRLVEALPYNTSLVEMK K T L L R L 1 1 2 0 0 0 1 2 0 2 2 0 0 1 0 2 1 0 0 1 0 0 16 0 1689.905 P28289 P28289 256 271 TMOD1 Tropomodulin-1 yes yes 2 3.4616E-05 132.59 By MS/MS 5 0 1 1 4921000 0 0 4921000 13397 689 14078 58497 48960 48960 1 0 0 686400 TLPAHSDPVSAVHFNR ESVRIWDVKTGKCLKTLPAHSDPVSAVHFN LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR K T L N R D 2 1 1 1 0 0 0 0 2 0 1 0 0 1 2 2 1 0 0 2 0 0 16 0 1746.8802 P61964 P61964 166 181 WDR5 WD repeat-containing protein 5 yes yes 3;4 0.00010058 97.417 By MS/MS By MS/MS 5.4 0.49 3 2 2 3 91958000 0 12321000 79637000 13398 1001 14079 58498;58499;58500;58501;58502 48961;48962;48963;48964 48962 4 0 4036600 11271000 TLPDEVLTK IVRERAIKFLSTKLKTLPDEVLTKEVEELI LSTKLKTLPDEVLTKEVEELILTESKKVLE K T L T K E 0 0 0 1 0 0 1 0 0 0 2 1 0 0 1 0 2 0 0 1 0 0 9 0 1014.5597 Q9BZZ5 Q9BZZ5 161 169 API5 Apoptosis inhibitor 5 yes yes 2 0.023126 80.165 By matching By MS/MS 3.67 0.471 1 2 1 2 29756000 3311400 0 26445000 13399 1947 14080 58503;58504;58505 48965;48966 48966 2 2583500 0 4785400 TLPETLDPAEYNISPETR ______________________________ ETLDPAEYNISPETRRAQAERLAIRAQLKR R T L T R R 1 1 1 1 0 0 3 0 0 1 2 0 0 0 3 1 3 0 1 0 0 0 18 0 2044.9953 O95168 O95168 13 30 NDUFB4 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 yes yes 2 0.0053608 69.716 By MS/MS 9 0 1 1 2046200 0 0 2046200 13400 311 14081 58506 48967 48967 1 0 0 653660 TLPHGAGHLAFSQR KIFDLRGTYQPLSTRTLPHGAGHLAFSQRG RTLPHGAGHLAFSQRGLLVAGMGDVVNIWA R T L Q R G 2 1 0 0 0 1 0 2 2 0 2 0 0 1 1 1 1 0 0 0 0 0 14 0 1490.7742 O15213 O15213 399 412 WDR46 WD repeat-containing protein 46 yes yes 2;3 0.00074784 91.207 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 50401000 0 18995000 31406000 13401 173 14082 58507;58508;58509;58510 48968;48969;48970 48968 3 0 8097500 5918500 TLPLFYGSIVR DGKIYKAGQLVKTIKTLPLFYGSIVRFFLY KTIKTLPLFYGSIVRFFLYGDHDGEVYATG K T L V R F 0 1 0 0 0 0 0 1 0 1 2 0 0 1 1 1 1 0 1 1 0 0 11 0 1264.718 A6NHR9 A6NHR9 620 630 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.00351 105.1 By matching By matching By MS/MS 1.33 0.471 2 1 1 1 1 11783000 604530 8767000 2411700 13402 15 14083 58511;58512;58513 48971 48971 1 604530 4285200 544990 TLPLTGSTFHDQIAMLSHR RTMLLLSRSPEAQPKTLPLTGSTFHDQIAM TGSTFHDQIAMLSHRCFNTLTNSFQPSLLG K T L H R C 1 1 0 1 0 1 0 1 2 1 3 0 1 1 1 2 3 0 0 0 0 0 19 0 2124.0786 P55265 P55265 832 850 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 1.2457E-09 154.07 By MS/MS 2 0 1 1 5192900 0 0 5192900 13403 941 14084 58514 48972 48972 1 0 0 1173500 TLPPATSTEPSVILSK SDPAEVLVKNSQPIKTLPPATSTEPSVILS LPPATSTEPSVILSKSDSDKSSSQVPPILQ K T L S K S 1 0 0 0 0 0 1 0 0 1 2 1 0 0 3 3 3 0 0 1 0 0 16 0 1639.9033 Q86UE4 Q86UE4 511 526 MTDH Protein LYRIC yes yes 2 4.8818E-05 113.65 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 23510000 0 12853000 10656000 13404 1546 14085 58515;58516;58517 48973;48974;48975;48976;48977 48973 4 0 5263100 2066800 TLPQAEALDR KNLTQYSWLLDGFPRTLPQAEALDRAYQID DGFPRTLPQAEALDRAYQIDTVINLNVPFE R T L D R A 2 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 1 0 0 0 0 0 10 0 1112.5826 Q9UIJ7 Q9UIJ7 95 104 AK3 GTP:AMP phosphotransferase AK3, mitochondrial yes yes 2 0.0049526 98.033 By MS/MS 7 0 1 1 3238700 0 0 3238700 13405 2166 14086 58518 48978 48978 1 0 0 574690 TLQAAAFLDFLWHNMK ALLPYTERHFQRLSRTLQAAAFLDFLWHNM LQAAAFLDFLWHNMKLPVPAAAPTPWETHK R T L M K L 3 0 1 1 0 1 0 0 1 0 3 1 1 2 0 0 1 1 0 0 0 0 16 0 1904.9607 Q12788 Q12788 774 789 TBL3 Transducin beta-like protein 3 yes yes 2;3 0.0015559 74.816 By MS/MS 2.6 1.02 1 1 2 1 5 11559000 0 0 11559000 13406 1197 14087 58519;58520;58521;58522;58523 48979;48980;48981 48979 3 0 0 2296000 TLQAGLSSNHVSHGEVLR SHTCQCFCLRDASFKTLQAGLSSNHVSHGE AGLSSNHVSHGEVLRKVERGSRIVTVVPQD K T L L R K 1 1 1 0 0 1 1 2 2 0 3 0 0 0 0 3 1 0 0 2 0 0 18 0 1903.9864 O95163 O95163 672 689 IKBKAP Elongator complex protein 1 yes yes 3 0.0004385 76.713 By MS/MS 2 0 1 1 4430200 0 0 4430200 13407 310 14088 58524 48982 48982 1 0 0 1001100 TLQALEFHTVPFQLLAR NLSLYWSHEALFQKKTLQALEFHTVPFQLL QALEFHTVPFQLLARYKGLNLTEDTYKPRI K T L A R Y 2 1 0 0 0 2 1 0 1 0 4 0 0 2 1 0 2 0 0 1 0 0 17 0 1983.0942 Q08380 Q08380 377 393 LGALS3BP Galectin-3-binding protein yes yes 3 0.0010402 74.772 By MS/MS 3 0 1 1 2106400 0 2106400 0 13408 1183 14089 58525 48983 48983 1 0 897950 0 TLQALQIPAAK IGLINEALDEGDAQKTLQALQIPAAKLEGV DAQKTLQALQIPAAKLEGVLAEVAQHYQDT K T L A K L 3 0 0 0 0 2 0 0 0 1 2 1 0 0 1 0 1 0 0 0 0 0 11 0 1152.6867 P46940 P46940 557 567 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.0072008 96.668 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 18892000 5692600 6686000 6513300 13409 835 14090 58526;58527;58528;58529;58530 48984;48985;48986 48985 3 5692600 3159400 1370700 TLQEEVMEAMGIK SVEDALERTYVPCLKTLQEEVMEAMGIKET LKTLQEEVMEAMGIKETRKYKKVYWY____ K T L I K E 1 0 0 0 0 1 3 1 0 1 1 1 2 0 0 0 1 0 0 1 0 0 13 0 1477.7157 Q96A35 Q96A35 193 205 MRPL24 39S ribosomal protein L24, mitochondrial yes yes 2 0.05337 67.726 By MS/MS 6.5 0.5 1 1 2 5492600 0 0 5492600 13410 1747 14091 58531;58532 48987 48987 1 0 0 919540 TLQELSIDGLLNR LLGNFLQWYGIFSNKTLQELSIDGLLNRYI NKTLQELSIDGLLNRYILMAFQNSEYGDDS K T L N R Y 0 1 1 1 0 1 1 1 0 1 4 0 0 0 0 1 1 0 0 0 0 0 13 0 1470.8042 Q9Y5B6 Q9Y5B6 794 806 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 3.0033E-12 122.98 By MS/MS 2 0 1 1 0 0 0 0 13411 2295 14092 58533 48988 48988 1 0 0 0 TLQEQLEK ______________________________ ______________________________ R T L E K A 0 0 0 0 0 2 2 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 8 0 987.52368 Q9H307 Q9H307 7 14 PNN Pinin yes yes 2 0.0044377 101.64 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 36318000 0 22686000 13632000 13412 1978 14093 58534;58535;58536;58537;58538 48989;48990;48991;48992 48989 4 0 10115000 3035200 TLQEQLENGPNTQLAR REHVKEVQQLQGKIRTLQEQLENGPNTQLA LQEQLENGPNTQLARLQQENSILRDALNQA R T L A R L 1 1 2 0 0 3 2 1 0 0 3 0 0 0 1 0 2 0 0 0 0 0 16 0 1810.9173 Q9P2E9 Q9P2E9 782 797 RRBP1 Ribosome-binding protein 1 yes yes 2 5.9032E-91 256.95 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 18207000 0 2771800 15436000 13413 2122 14094 58539;58540;58541 48993;48994 48994 2 0 1248200 3404700 TLQEVTEMDSVK ILGPETLRDLAQGTKTLQEVTEMDSVKRYL GTKTLQEVTEMDSVKRYLEGTSCIAGVLVP K T L V K R 0 0 0 1 0 1 2 0 0 0 1 1 1 0 0 1 2 0 0 2 0 0 12 0 1378.665 P58107 P58107 2742 2753 EPPK1 Epiplakin yes no 2 0.00069182 121.9 By MS/MS 1 0 1 1 26391000 0 26391000 0 13414 958 14095 58542 48995 48995 1 0 12900000 0 TLQEVTEMDSVKR ILGPETLRDLAQGTKTLQEVTEMDSVKRYL TKTLQEVTEMDSVKRYLEGTSCIAGVLVPA K T L K R Y 0 1 0 1 0 1 2 0 0 0 1 1 1 0 0 1 2 0 0 2 0 0 13 1 1534.7661 P58107 P58107 2742 2754 EPPK1 Epiplakin yes no 2;3 6.4563E-07 165.11 By MS/MS By MS/MS 1.4 0.663 7 2 1 4 6 272300000 0 97207000 175100000 13415 958 14096;14097 58543;58544;58545;58546;58547;58548;58549;58550;58551;58552 48996;48997;48998;48999;49000;49001;49002;49003 49002 459 8 0 47513000 37808000 TLQEVTQLSQEAQR CFIAGADINMLAACKTLQEVTQLSQEAQRI KTLQEVTQLSQEAQRIVEKLEKSTKPIVAA K T L Q R I 1 1 0 0 0 4 2 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 14 0 1629.8322 P40939 P40939 112 125 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2 2.5872E-34 213.16 By MS/MS 3 0 1 1 6024000 0 6024000 0 13416 789 14098 58553 49004 49004 1 0 2568000 0 TLQHGLYYASR TRHYDQDYYRDPRERTLQHGLYYASRSRSP PRERTLQHGLYYASRSRSPNRFDAHDPRYE R T L S R S 1 1 0 0 0 1 0 1 1 0 2 0 0 0 0 1 1 0 2 0 0 0 11 0 1307.6622 Q96T58 Q96T58 177 187 SPEN Msx2-interacting protein yes yes 3 0.016214 66.023 By MS/MS 2 0 1 1 3209600 0 0 3209600 13417 1839 14099 58554 49005 49005 1 0 0 725310 TLQIFNIEMK IMNPASKVIALKAGKTLQIFNIEMKSKMKA LKAGKTLQIFNIEMKSKMKAHTMTDDVTFW K T L M K S 0 0 1 0 0 1 1 0 0 2 1 1 1 1 0 0 1 0 0 0 0 0 10 0 1235.6584 Q00610;P53675 Q00610 87 96 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.00044539 117.89 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 56777000 0 3449100 53327000 13418 1125 14100 58555;58556;58557;58558 49006;49007 49007 2 0 1685900 11567000 TLQLDNNFEVK SSVKLWDLRKLKNFKTLQLDNNFEVKSLIF KNFKTLQLDNNFEVKSLIFDQSGTYLALGG K T L V K S 0 0 2 1 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 11 0 1319.6721 Q9UMS4 Q9UMS4 429 439 PRPF19 Pre-mRNA-processing factor 19 yes yes 2 1.1484E-09 169.09 By MS/MS By MS/MS 2.83 1.07 1 1 2 2 3 3 253310000 0 100990000 152310000 13419 2199 14101 58559;58560;58561;58562;58563;58564 49008;49009;49010;49011;49012;49013 49009 6 0 34006000 26009000 TLQLWLDNPK GPQQTQKVFLFIRNRTLQLWLDNPKIQLTF FIRNRTLQLWLDNPKIQLTFEATLQQLEAP R T L P K I 0 0 1 1 0 1 0 0 0 0 3 1 0 0 1 0 1 1 0 0 0 0 10 0 1226.6659 O60341 O60341 217 226 KDM1A Lysine-specific histone demethylase 1A yes yes 2 0.00021066 141.48 By MS/MS 2.5 0.5 1 1 2 31281000 0 0 31281000 13420 226 14102 58565;58566 49014 49014 1 0 0 6318300 TLQQNAESR KAIKLLEHSKGAGSKTLQQNAESRFN____ KGAGSKTLQQNAESRFN_____________ K T L S R F 1 1 1 0 0 2 1 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 9 0 1045.5152 O95816 O95816 201 209 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.0070215 93.429 By MS/MS By MS/MS 7 0 2 1 1 1464700 0 788240 676500 13421 342 14103 58567;58568 49015;49016 49015 2 0 452610 120040 TLQQNAESRFN KAIKLLEHSKGAGSKTLQQNAESRFN____ AGSKTLQQNAESRFN_______________ K T L F N - 1 1 2 0 0 2 1 0 0 0 1 0 0 1 0 1 1 0 0 0 0 0 11 1 1306.6266 O95816 O95816 201 211 BAG2 BAG family molecular chaperone regulator 2 yes yes 2 0.0023081 133.13 By MS/MS 7 0 1 1 2153400 0 2153400 0 13422 342 14104 58569 49017 49017 1 0 1236500 0 TLQTIALLGYLK NGVNGILADEMGLGKTLQTIALLGYLKHYR LGKTLQTIALLGYLKHYRNIPGPHMVLVPK K T L L K H 1 0 0 0 0 1 0 1 0 1 4 1 0 0 0 0 2 0 1 0 0 0 12 0 1332.8017 P28370 P28370 215 226 SMARCA1 Probable global transcription activator SNF2L1 yes yes 2 9.0348E-05 140.75 By matching By MS/MS By MS/MS 2 0.632 1 3 1 1 1 3 45349000 935080 9738300 34676000 13423 693 14105 58570;58571;58572;58573;58574 49018;49019;49020 49018 2 1126700 4385300 7743700 TLQTISLLGYMK NGINGILADEMGLGKTLQTISLLGYMKHYR LGKTLQTISLLGYMKHYRNIPGPHMVLVPK K T L M K H 0 0 0 0 0 1 0 1 0 1 3 1 1 0 0 1 2 0 1 0 0 0 12 0 1366.753 O60264 O60264 212 223 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 1.426E-05 155.42 By MS/MS By MS/MS By MS/MS 1.78 0.629 3 5 1 1 3 5 116450000 4749500 30750000 80948000 13424 223 14106;14107 58575;58576;58577;58578;58579;58580;58581;58582;58583 49021;49022;49023;49024;49025;49026;49027;49028 49024 92 8 5722600 13952000 18032000 TLQYLSQGNVVFK ______________________________ RRTLQYLSQGNVVFKDSVKVMTVNYNTHGE R T L F K D 0 0 1 0 0 2 0 1 0 0 2 1 0 1 0 1 1 0 1 2 0 0 13 0 1495.8035 P82663 P82663 12 24 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 2 0.0017517 109.42 By MS/MS By MS/MS 7 0 2 1 1 14500000 0 2943900 11556000 13425 1097 14108 58584;58585 49029;49030 49030 2 0 1690400 2050500 TLSADASVNTLPVVVSR ENRLSSLIIGPSKERTLSADASVNTLPVVV SADASVNTLPVVVSREPSVPASCAVSATYE R T L S R E 2 1 1 1 0 0 0 0 0 0 2 0 0 0 1 3 2 0 0 4 0 0 17 0 1727.9418 Q92615 Q92615 566 582 LARP4B La-related protein 4B yes yes 2 1.1164E-05 137.62 By matching By MS/MS 2 0 2 1 1 8635700 4771700 3864100 0 13426 1711 14109 58586;58587 49031 49031 1 5749300 1740000 0 TLSDDLDEAAKEFQEK QMVAAKDVVMEPTMKTLSDDLDEAAKEFQE LSDDLDEAAKEFQEKHKKEVGKLKSMDLSE K T L E K H 2 0 0 3 0 1 3 0 0 0 2 2 0 1 0 1 1 0 0 0 0 0 16 1 1837.8582 Q9H0A0 Q9H0A0 932 947 NAT10 N-acetyltransferase 10 yes yes 3 0.0056 63.025 By MS/MS 2 0 1 1 11244000 0 0 11244000 13427 1959 14110 58588 49032 49032 1 0 0 2541000 TLSDYNIQK QQRLIFAGKQLEDGRTLSDYNIQKESTLHL QLEDGRTLSDYNIQKESTLHLVLRLRGGII R T L Q K E 0 0 1 1 0 1 0 0 0 1 1 1 0 0 0 1 1 0 1 0 0 0 9 0 1080.5451 P62987;P62979;P0CG47;P0CG48 P62987 55 63 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2 9.9681E-05 142.64 By MS/MS By MS/MS By MS/MS 5.83 2.7 2 3 3 3 3 2 2 2 3 7 8 8 5213600000 866000000 1393300000 2954300000 13428 500 14111 58589;58590;58591;58592;58593;58594;58595;58596;58597;58598;58599;58600;58601;58602;58603;58604;58605;58606;58607;58608;58609;58610;58611 49033;49034;49035;49036;49037;49038;49039;49040;49041;49042;49043;49044;49045;49046;49047;49048;49049;49050;49051;49052;49053;49054;49055;49056;49057;49058 49036 26 1044100000 1649200000 1135000000 TLSDYNIQKESTLHLVLR QQRLIFAGKQLEDGRTLSDYNIQKESTLHL DYNIQKESTLHLVLRLRGGIIEPSLRQLAQ R T L L R L 0 1 1 1 0 1 1 0 1 1 4 1 0 0 0 2 2 0 1 1 0 0 18 1 2129.1481 P62987;P62979;P0CG47;P0CG48 P62987 55 72 UBA52;RPS27A;UBB;UBC Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40;Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-B;Ubiquitin;Polyubiquitin-C;Ubiquitin yes no 2;3;4 1.0676E-15 180.09 By MS/MS By MS/MS By MS/MS 7.56 1.07 7 1 1 4 2 3 97654000 8210600 10560000 78884000 13429 500 14112 58612;58613;58614;58615;58616;58617;58618;58619;58620 49059;49060;49061;49062;49063;49064 49064 6 11868000 6063600 13997000 TLSEETR LKSEQIRAQAEERRKTLSEETRQHQARAQY AQAEERRKTLSEETRQHQARAQYQDKLARQ K T L T R Q 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 1 2 0 0 0 0 0 7 0 834.40831 Q5T9A4;Q9NVI7 Q9NVI7 166 172 ATAD3B;ATAD3A ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A no no 2 0.0028263 138.85 By MS/MS 3 0 1 1 3442000 0 0 3442000 13430 2066;1456 14113 58621 49065;49066;49067;49068 49066 4 0 0 667590 TLSFSSDNIAVLSAAADSIK RTSRITIGGHRSDVRTLSFSSDNIAVLSAA SDNIAVLSAAADSIKIWNRSTLQCIRTMTC R T L I K I 4 0 1 2 0 0 0 0 0 2 2 1 0 1 0 5 1 0 0 1 0 0 20 0 2009.0317 Q9UNX4 Q9UNX4 420 439 WDR3 WD repeat-containing protein 3 yes yes 2 1.0129E-27 186.95 By MS/MS 2 0 1 1 6877700 0 6877700 0 13431 2212 14114 58622 49069 49069 1 0 3097100 0 TLSSPSNRPSGETSVPPPPAVGR SRMSPKAQRPLRGAKTLSSPSNRPSGETSV PSGETSVPPPPAVGRMYPPRSPKSAAPAPI K T L G R M 1 2 1 0 0 0 1 2 0 0 1 0 0 0 6 5 2 0 0 2 0 0 23 1 2289.1713 Q8WWM7 Q8WWM7 421 443 ATXN2L Ataxin-2-like protein yes yes 3 2.5027E-11 103.95 By MS/MS 2 0 1 1 4597800 0 4597800 0 13432 1689 14115 58623 49070 49070 1 0 2070400 0 TLSYLLPAIVHINHQPFLER SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ LPAIVHINHQPFLERGDGPICLVLAPTREL K T L E R G 1 1 1 0 0 1 1 0 2 2 4 0 0 1 2 1 1 0 1 1 0 0 20 0 2360.3005 P17844 P17844 145 164 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 3;4 9.1418E-08 102.98 By MS/MS By MS/MS 3.43 0.495 4 3 3 4 217760000 0 30635000 187130000 13433 588 14116 58624;58625;58626;58627;58628;58629;58630 49071;49072;49073;49074;49075;49076;49077 49075 7 0 12467000 35203000 TLSYLLPLLQR RGRHVVCAAETGSGKTLSYLLPLLQRLLGQ GSGKTLSYLLPLLQRLLGQPSLDSLPIPAP K T L Q R L 0 1 0 0 0 1 0 0 0 0 5 0 0 0 1 1 1 0 1 0 0 0 11 0 1315.7864 Q9NUL7 Q9NUL7 179 189 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 2 0.022156 83.005 By MS/MS 4 0 1 1 3895600 0 3895600 0 13434 2061 14117 58631 49078 49078 1 0 1292800 0 TLTAIAVILTNFHDGRPLPIER NVHGGILADDMGLGKTLTAIAVILTNFHDG ILTNFHDGRPLPIERVKKNLLKKEYNVNDD K T L E R V 2 2 1 1 0 0 1 1 1 3 3 0 0 1 2 0 3 0 0 1 0 0 22 1 2446.3696 Q14527 Q14527 301 322 HLTF Helicase-like transcription factor yes yes 4 1.6312E-21 155.11 By MS/MS 2 0 1 1 1413200 0 0 1413200 13435 1303 14118 58632 49079 49079 1 0 0 319350 TLTDEDEADQGGWLAAFWK TPNDLTGEHSCIMLKTLTDEDEADQGGWLA EDEADQGGWLAAFWKDFRRRFLALLSYQFS K T L W K D 3 0 0 3 0 1 2 2 0 0 2 1 0 1 0 0 2 2 0 0 0 0 19 0 2151.9749 Q9H0A0 Q9H0A0 751 769 NAT10 N-acetyltransferase 10 yes yes 2 8.0721E-13 171.57 By MS/MS 2 0 1 1 3238900 0 0 3238900 13436 1959 14119 58633 49080 49080 1 0 0 731930 TLTDELAALQITGVK LAYCSSKFAAVGFHKTLTDELAALQITGVK TLTDELAALQITGVKTTCLCPNFVNTGFIK K T L V K T 2 0 0 1 0 1 1 1 0 1 3 1 0 0 0 0 3 0 0 1 0 0 15 0 1571.877 Q8NBQ5 Q8NBQ5 198 212 HSD17B11 Estradiol 17-beta-dehydrogenase 11 yes yes 2 0.00028835 125.28 By MS/MS 6.5 0.5 1 1 2 7320200 0 0 7320200 13437 1627 14120 58634;58635 49081 49081 1 0 0 1112800 TLTDEVNSPDSDRR DDKNPVSRRKKISAKTLTDEVNSPDSDRRD KTLTDEVNSPDSDRRDKKGGNYKKRKRSPS K T L R R D 0 2 1 3 0 0 1 0 0 0 1 0 0 0 1 2 2 0 0 1 0 0 14 1 1603.7438 Q8TAQ2 Q8TAQ2 276 289 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 3 0.0010189 87.18 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 12234000 0 3371200 8863100 13438 1653 14121 58636;58637;58638 49082;49083 49083 2 0 1518100 1930100 TLTELILDAQEHVK KLKWVEISNEVRKFRTLTELILDAQEHVKN RTLTELILDAQEHVKNPYKGKKLKKHPDFP R T L V K N 1 0 0 1 0 1 2 0 1 1 3 1 0 0 0 0 2 0 0 1 0 0 14 0 1608.8723 P17480 P17480 84 97 UBTF Nucleolar transcription factor 1 yes yes 2;3 0.00031375 147.91 By MS/MS By MS/MS 3.54 1.95 2 3 3 2 2 1 2 11 158500000 0 5458200 153040000 13439 584 14122 58639;58640;58641;58642;58643;58644;58645;58646;58647;58648;58649;58650;58651 49084;49085;49086;49087;49088;49089;49090;49091;49092;49093;49094;49095 49084 12 0 2416600 31787000 TLTELILDAQEHVKNPYK KLKWVEISNEVRKFRTLTELILDAQEHVKN ELILDAQEHVKNPYKGKKLKKHPDFPKKPL R T L Y K G 1 0 1 1 0 1 2 0 1 1 3 2 0 0 1 0 2 0 1 1 0 0 18 1 2111.1263 P17480 P17480 84 101 UBTF Nucleolar transcription factor 1 yes yes 3 0.00013731 94.203 By MS/MS 2 0 1 1 4574400 0 4574400 0 13440 584 14123 58652 49096 49096 1 0 2059900 0 TLTLVDTGIGMTK GKELKIDIIPNPQERTLTLVDTGIGMTKAD ERTLTLVDTGIGMTKADLINNLGTIAKSGT R T L T K A 0 0 0 1 0 0 0 2 0 1 2 1 1 0 0 0 4 0 0 1 0 0 13 0 1348.7272 P08238 P08238 83 95 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2 1.3475E-07 166.97 By matching By MS/MS By MS/MS 5.42 2.83 1 4 4 1 1 4 4 2 3 3 12 9 189100000 15237000 79221000 94645000 13441 469 14124 58653;58654;58655;58656;58657;58658;58659;58660;58661;58662;58663;58664;58665;58666;58667;58668;58669;58670;58671;58672;58673;58674;58675;58676 49097;49098;49099;49100;49101;49102;49103;49104;49105;49106;49107;49108;49109;49110;49111;49112;49113;49114;49115;49116 49112 20 14213000 46258000 33409000 TLTPDQWAR CLAEELPHIHAFEQKTLTPDQWARERQK__ HAFEQKTLTPDQWARERQK___________ K T L A R E 1 1 0 1 0 1 0 0 0 0 1 0 0 0 1 0 2 1 0 0 0 0 9 0 1086.5458 Q9H3K6 Q9H3K6 74 82 BOLA2 BolA-like protein 2 yes yes 2 0.018513 83.206 By matching By MS/MS 10 0 2 1 1 6788800 0 2290700 4498100 13442 1979 14125 58677;58678 49117 49117 1 0 11589000 9837800 TLTTVQGIADDYDK EDYIHIRIQQRNGRKTLTTVQGIADDYDKK KTLTTVQGIADDYDKKKLVKAFKKKFACNG K T L D K K 1 0 0 3 0 1 0 1 0 1 1 1 0 0 0 0 3 0 1 1 0 0 14 0 1538.7464 P41567;O60739 P41567 43 56 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 2 0.060655 61.235 By MS/MS 9 0 1 1 7325100 0 0 7325100 13443 797 14126 58679 49118 49118 0 0 0 2340000 TLTTVQGIADDYDKK EDYIHIRIQQRNGRKTLTTVQGIADDYDKK TLTTVQGIADDYDKKKLVKAFKKKFACNGT K T L K K K 1 0 0 3 0 1 0 1 0 1 1 2 0 0 0 0 3 0 1 1 0 0 15 1 1666.8414 P41567;O60739 P41567 43 57 EIF1;EIF1B Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b yes no 3 0.0011238 80.534 By MS/MS 9 0 1 1 6328600 0 0 6328600 13444 797 14127 58680 49119 49119 1 0 0 2021600 TLVAVERPLDDIIAQLPPPIK KIYKPLLFMDLLDERTLVAVERPLDDIIAQ RPLDDIIAQLPPPIKKKKFGT_________ R T L I K K 2 1 0 2 0 1 1 0 0 3 3 1 0 0 4 0 1 0 0 2 0 0 21 1 2297.3359 Q969X6 Q969X6 660 680 CIRH1A Cirhin yes yes 3 0.0052019 49.973 By MS/MS 3 0 1 1 5411400 0 0 5411400 13445 1746 14128 58681 49120 49120 1 0 0 1049500 TLVEDLFADK YGFAIHHAGMTRVDRTLVEDLFADKHIQVL TRVDRTLVEDLFADKHIQVLVSTATLAWGV R T L D K H 1 0 0 2 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 10 0 1149.5918 O75643 O75643 795 804 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.0041296 99.815 By MS/MS 1 0 1 1 24570000 0 0 24570000 13446 277 14129 58682 49121 49121 1 0 0 5294000 TLVLLDNLNVR LLLPLLGAVCASGPRTLVLLDNLNVRETHS SGPRTLVLLDNLNVRETHSLFFRSLKDRGF R T L V R E 0 1 2 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 2 0 0 11 0 1268.7452 P39656 P39656 47 57 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes yes 2 1.2666E-07 161.92 By MS/MS By MS/MS 5 0 2 1 1 19848000 0 5888700 13960000 13447 779 14130 58683;58684 49122;49123 49123 2 0 1517900 1947100 TLVLSNLSYSATEETLQEVFEK DYRGGKNSTWSGESKTLVLSNLSYSATEET SYSATEETLQEVFEKATFIKVPQNQNGKSK K T L E K A 1 0 1 0 0 1 4 0 0 0 4 1 0 1 0 3 3 0 1 2 0 0 22 0 2500.2585 P19338 P19338 487 508 NCL Nucleolin yes yes 2;3 1.7498E-170 281.93 By matching By MS/MS 2.3 1.1 3 3 2 2 1 9 457070000 0 429440 456640000 13448 604 14131 58685;58686;58687;58688;58689;58690;58691;58692;58693;58694 49124;49125;49126;49127;49128;49129;49130 49128 7 0 209900 95470000 TLVSTVGSMVFNEGEAQR PGPPDADGPLYLPYKTLVSTVGSMVFNEGE STVGSMVFNEGEAQRLIEILSEKAGIIQDT K T L Q R L 1 1 1 0 0 1 2 2 0 0 1 0 1 1 0 2 2 0 0 3 0 0 18 0 1923.936 Q9P2E9 Q9P2E9 652 669 RRBP1 Ribosome-binding protein 1 yes yes 2;3 4.1827E-12 167.98 By MS/MS 1.5 0.5 2 2 4 32716000 0 0 32716000 13449 2122 14132 58695;58696;58697;58698 49131;49132;49133 49133 3 0 0 7227200 TLVTQNSGVEALIHAILR TGTLSNLTCNNSKNKTLVTQNSGVEALIHA TQNSGVEALIHAILRAGDKDDITEPAVCAL K T L L R A 2 1 1 0 0 1 1 1 1 2 3 0 0 0 0 1 2 0 0 2 0 0 18 0 1934.0949 P14923 P14923 427 444 JUP Junction plakoglobin yes yes 2;3 3.0475E-15 137.52 By MS/MS By MS/MS By MS/MS 4.62 2.2 1 1 2 4 3 1 1 4 3 6 83324000 14481000 2149000 66694000 13450 567 14133 58699;58700;58701;58702;58703;58704;58705;58706;58707;58708;58709;58710;58711 49134;49135;49136;49137;49138;49139;49140;49141;49142;49143;49144 49144 10 11247000 842520 12859000 TLYGFGG VTAMDVVYALKRQGRTLYGFGG________ YALKRQGRTLYGFGG_______________ R T L G G - 0 0 0 0 0 0 0 3 0 0 1 0 0 1 0 0 1 0 1 0 0 0 7 0 713.33844 P62805 P62805 97 103 HIST1H4A Histone H4 yes yes 1 0.045183 126.25 By MS/MS 9 0 1 1 12189000000 12189000000 0 0 13451 1033 14134 58712 49145 49145 1 6841500000 0 0 TLYISDSDKR MQQLNLEGKNYCTAKTLYISDSDKRKHFML YCTAKTLYISDSDKRKHFMLSVKMFYGNSD K T L K R K 0 1 0 2 0 0 0 0 0 1 1 1 0 0 0 2 1 0 1 0 0 0 10 1 1196.6037 Q06330 Q06330 127 136 RBPJ Recombining binding protein suppressor of hairless yes yes 2 0.020698 87.639 By MS/MS 3.5 0.5 1 1 2 4208600 0 0 4208600 13452 1170 14135 58713;58714 49146;49147 49147 2 0 0 755420 TLYNNQPIDFLKK LYTVEYLSNMVGGRKTLYNNQPIDFLKKMV RKTLYNNQPIDFLKKMVAASIKDGEAVWFG K T L K K M 0 0 2 1 0 1 0 0 0 1 2 2 0 1 1 0 1 0 1 0 0 0 13 1 1592.8562 Q13867 Q13867 298 310 BLMH Bleomycin hydrolase yes yes 3 0.017304 59.976 By MS/MS 9.5 0.5 1 1 2 6334000 6334000 0 0 13453 1272 14136 58715;58716 49148 49148 1 5804900 0 0 TLYTDIAIGLLK LTKYSVIMLDEAHERTLYTDIAIGLLKKIQ HERTLYTDIAIGLLKKIQKKRGDLRLIVAS R T L L K K 1 0 0 1 0 0 0 1 0 2 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1319.7701 Q9H5Z1 Q9H5Z1 182 193 DHX35 Probable ATP-dependent RNA helicase DHX35 yes yes 2 0.01716 86.624 By MS/MS 3 0 1 1 1498300 0 0 1498300 13454 1985 14137 58717 49149 49149 1 0 0 290590 TLYTLVTK EAARDVCSHFDLNKKTLYTLVTKRDSKGVY HFDLNKKTLYTLVTKRDSKGVYDVRQAYVQ K T L T K R 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 3 0 1 1 0 0 8 0 937.54843 O60287 O60287 178 185 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.051917 72.485 By MS/MS 1 0 1 1 4339100 0 0 4339100 13455 224 14138 58718 49150 49150 1 0 0 934920 TLYVGNLSR ______________________________ DDGQPRTLYVGNLSRDVTEVLILQLFSQIG R T L S R D 0 1 1 0 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 1 0 0 9 0 1021.5556 Q01085 Q01085 10 18 TIAL1 Nucleolysin TIAR no no 2 0.00040123 122.19 By MS/MS 5 0 1 1 18802000 0 18802000 0 13456 1129 14139 58719 49151 49151 1 0 4846600 0 TMATMGDTLASR MVLSNLNNNMDVESRTMATMGDTLASRGLL ESRTMATMGDTLASRGLLDAAHFCYLMAQA R T M S R G 2 1 0 1 0 0 0 1 0 0 1 0 2 0 0 1 3 0 0 0 0 0 12 0 1253.5744 O15027 O15027 1722 1733 SEC16A Protein transport protein Sec16A yes yes 2 0.0020163 109.83 By matching By MS/MS 1.33 0.471 2 1 1 2 21763000 0 4102600 17660000 13457 161 14140 58720;58721;58722 49152;49153 49153 2 0 2005300 3855800 TMDKSELVQK ______________________________ ______________________________ M T M Q K A 0 0 0 1 0 1 1 0 0 0 1 2 1 0 0 1 1 0 0 1 0 0 10 1 1177.6013 P31946 P31946 2 11 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2 0.030888 66.568 By MS/MS 7 0 1 1 1694000 0 1694000 0 13458 724 14141 58723 49154 49154 1 0 972710 0 TMFENVTR ______________________________ ______________________________ M T M T R A 0 1 1 0 0 0 1 0 0 0 0 0 1 1 0 0 2 0 0 1 0 0 8 0 996.46987 Q96QA5 Q96QA5 2 9 GSDMA Gasdermin-A yes yes 2 0.023643 73.248 By MS/MS 1 0 1 1 5942500 5942500 0 0 13459 1822 14142 58724 49155 49155 1 5942500 0 0 TMIISPER PKIADREDEYKKHRRTMIISPERLDPFADG EYKKHRRTMIISPERLDPFADGGKTPDPKM R T M E R L 0 1 0 0 0 0 1 0 0 2 0 0 1 0 1 1 1 0 0 0 0 0 8 0 945.49535 O75533 O75533 125 132 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.02996 77.923 By MS/MS 2 0 1 1 4898100 0 4898100 0 13460 270 14143 58725 49156 49156 1 0 2205700 0 TMIQSPSGVILQEAADVHAR YTSGLETLLNIPIKRTMIQSPSGVILQEAA PSGVILQEAADVHARYIELLTRSGDYYRFL R T M A R Y 3 1 0 1 0 2 1 1 1 2 1 0 1 0 1 2 1 0 0 2 0 0 20 0 2122.0841 P15924 P15924 983 1002 DSP Desmoplakin yes yes 3 4.7967E-14 141.97 By MS/MS By MS/MS By MS/MS 4.07 3.22 5 2 1 1 1 1 1 1 1 10 2 2 186540000 94203000 24064000 68276000 13461 572 14144;14145 58726;58727;58728;58729;58730;58731;58732;58733;58734;58735;58736;58737;58738;58739 49157;49158;49159;49160;49161;49162;49163;49164;49165;49166;49167 49161 257 10 92416000 11467000 14711000 TMLTELLR VTTISMARCTLTLLKTMLTELLRGGSFEFK CTLTLLKTMLTELLRGGSFEFKDMRVPSAL K T M L R G 0 1 0 0 0 0 1 0 0 0 3 0 1 0 0 0 2 0 0 0 0 0 8 0 975.5423 Q69YN4 Q69YN4 1015 1022 KIAA1429 Protein virilizer homolog yes yes 2 0.00066657 126.67 By MS/MS By MS/MS 1 0 2 1 1 3927800 0 0 3927800 13462 1468 14146 58740;58741 49168;49169 49169 2 0 0 846320 TMLYTPQEMK HGIPLDLLDRVMIIRTMLYTPQEMKQIIKI VMIIRTMLYTPQEMKQIIKIRAQTEGINIS R T M M K Q 0 0 0 0 0 1 1 0 0 0 1 1 2 0 1 0 2 0 1 0 0 0 10 0 1240.5832 Q9Y265 Q9Y265 363 372 RUVBL1 RuvB-like 1 yes yes 2 0.0021652 106.6 By MS/MS 4 0 1 1 27095000 0 0 27095000 13463 2234 14147 58742 49170 49170 1 0 0 4425500 TMNNFLDR DSPMFIINRNTGEIRTMNNFLDREQYGQYA RNTGEIRTMNNFLDREQYGQYALAVRGSDR R T M D R E 0 1 2 1 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 0 0 8 0 1009.4651 Q02413 Q02413 220 227 DSG1 Desmoglein-1 yes yes 2 0.0013975 116.37 By MS/MS 4.86 3.18 1 1 1 1 1 1 1 7 23928000 23928000 0 0 13464 1146 14148 58743;58744;58745;58746;58747;58748;58749 49171;49172;49173;49174;49175 49173 5 22209000 0 0 TMNNFLDREQYGQYALAVR DSPMFIINRNTGEIRTMNNFLDREQYGQYA FLDREQYGQYALAVRGSDRDGGADGMSAEC R T M V R G 2 2 2 1 0 2 1 1 0 0 2 0 1 1 0 0 1 0 2 1 0 0 19 1 2288.1008 Q02413 Q02413 220 238 DSG1 Desmoglein-1 yes yes 3 7.4897E-181 294.14 By MS/MS 7 2.35 1 2 1 4 43075000 43075000 0 0 13465 1146 14149;14150 58750;58751;58752;58753 49176;49177;49178;49179 49178 550 3 34165000 0 0 TMPILSPGNTQTLTELELK PASAGICRIMGDLMRTMPILSPGNTQTLTE LSPGNTQTLTELELKWQHWHEECERYLQDS R T M L K W 0 0 1 0 0 1 2 1 0 1 4 1 1 0 2 1 4 0 0 0 0 0 19 0 2085.1028 Q9BW27 Q9BW27 239 257 NUP85 Nuclear pore complex protein Nup85 yes yes 2 1.1903E-08 116.96 By MS/MS 3 0 1 1 9144000 0 0 9144000 13466 1920 14151 58754 49180 49180 1 0 0 1773500 TMQALEIELQSQLSMK ELVQSGKSEISELRRTMQALEIELQSQLSM MQALEIELQSQLSMKASLEGNLAETENRYC R T M M K A 1 0 0 0 0 3 2 0 0 1 3 1 2 0 0 2 1 0 0 0 0 0 16 0 1848.9325 Q04695;CON__Q04695 Q04695 306 321 KRT17 Keratin, type I cytoskeletal 17 no no 2;3 1.3791E-21 131.32 By MS/MS By MS/MS 4.45 0.656 1 4 6 1 10 54872000 0 2038600 52833000 + 13467 73 14152;14153 58755;58756;58757;58758;58759;58760;58761;58762;58763;58764;58765 49181;49182;49183;49184;49185;49186;49187;49188;49189 49189 59 9 0 525500 7841000 TMQALPYSTVGNSNNYLHLSVLR RTKKQELSEAEQATRTMQALPYSTVGNSNN TVGNSNNYLHLSVLRTELRPGETLNVNFLL R T M L R T 1 1 3 0 0 1 0 1 1 0 4 0 1 0 1 3 2 0 2 2 0 0 23 0 2577.301 P01024 P01024 440 462 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 7.2289E-20 125.45 By MS/MS 9 0 1 1 7954400 7954400 0 0 13468 371 14154 58766 49190 49190 1 4464900 0 0 TMQDSVEDFK DTLGNDKGRLQSELKTMQDSVEDFKTKYEE QSELKTMQDSVEDFKTKYEEEINKRTAAEN K T M F K T 0 0 0 2 0 1 1 0 0 0 0 1 1 1 0 1 1 0 0 1 0 0 10 0 1198.5176 CON__P19013;P19013 CON__P19013 289 298 KRT4 Keratin, type II cytoskeletal 4 yes no 2 0.0072262 93.111 By MS/MS 1 0 1 1 13835000 13835000 0 0 + 13469 61 14155 58767 49191 49191 1 13835000 0 0 TMQNLEIELQSQLSMK ELVQSGKSEISELRRTMQNLEIELQSQLSM MQNLEIELQSQLSMKASLENSLEETKGRYC R T M M K A 0 0 1 0 0 3 2 0 0 1 3 1 2 0 0 2 1 0 0 0 0 0 16 0 1891.9383 CON__P02533;P02533 CON__P02533 337 352 KRT14 Keratin, type I cytoskeletal 14 yes no 2;3 4.7324E-05 114.56 By MS/MS By MS/MS 6.5 2.99 1 1 1 1 1 1 5 1 13941000 9914100 0 4027300 + 13470 35 14156;14157 58768;58769;58770;58771;58772;58773 49192;49193;49194 49194 12 3 7743000 0 867750 TMQNTSDLDTAR RALMGSPQLVAAVVRTMQNTSDLDTARCTT VVRTMQNTSDLDTARCTTSILHNLSHHREG R T M A R C 1 1 1 2 0 1 0 0 0 0 1 0 1 0 0 1 3 0 0 0 0 0 12 0 1351.6038 P14923 P14923 192 203 JUP Junction plakoglobin yes yes 2 2.3029E-12 182.16 By MS/MS By MS/MS 4.93 2.76 2 1 2 2 1 2 1 1 1 1 10 4 107750000 83405000 0 24342000 13471 567 14158 58774;58775;58776;58777;58778;58779;58780;58781;58782;58783;58784;58785;58786;58787 49195;49196;49197;49198;49199;49200;49201;49202;49203;49204;49205;49206;49207 49202 13 84418000 0 4609600 TMQTLLSLVR GKNVLIVEDIIDTGKTMQTLLSLVRQYNPK IDTGKTMQTLLSLVRQYNPKMVKVASLLVK K T M V R Q 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 1 2 0 0 1 0 0 10 0 1160.6587 P00492 P00492 142 151 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2 0.017332 84.522 By MS/MS 7 0 1 1 2038900 0 2038900 0 13472 361 14159 58788 49208 49208 1 0 1170800 0 TMTLFSALR EHKPLVLCGPPGSGKTMTLFSALRALPDME PPGSGKTMTLFSALRALPDMEVVGLNFSSA K T M L R A 1 1 0 0 0 0 0 0 0 0 2 0 1 1 0 1 2 0 0 0 0 0 9 0 1038.5532 Q14204 Q14204 2602 2610 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0016493 107.29 By MS/MS 1 0 1 1 3209900 0 3209900 0 13473 1292 14160 58789 49209 49209 1 0 1569000 0 TNAAAMNMGRPFQK NGSFVNGFNSPGSYKTNAAAMNMGRPFQKN KTNAAAMNMGRPFQKNRVKPQFRSSGGSEH K T N Q K N 3 1 2 0 0 1 0 1 0 0 0 1 2 1 1 0 1 0 0 0 0 0 14 1 1535.7337 Q71RC2 Q71RC2 359 372 LARP4 La-related protein 4 yes yes 2 3.2257E-08 113.69 By MS/MS 2 0 1 1 0 0 0 0 13474 1514 14161 58790 49210 49210 1 0 0 0 TNAENEFVTIK VEDYRNKYEDEINKRTNAENEFVTIKKDVD INKRTNAENEFVTIKKDVDGAYMTKVDLQA R T N I K K 1 0 2 0 0 0 2 0 0 1 0 1 0 1 0 0 2 0 0 1 0 0 11 0 1264.6299 P04264;CON__P04264 P04264 278 288 KRT1 Keratin, type II cytoskeletal 1 yes no 2 4.348E-19 187.97 By MS/MS By MS/MS By MS/MS 5.41 3 4 4 3 3 4 3 3 2 4 4 14 11 9 12135000000 8405700000 439390000 3290100000 + 13475 413 14162 58791;58792;58793;58794;58795;58796;58797;58798;58799;58800;58801;58802;58803;58804;58805;58806;58807;58808;58809;58810;58811;58812;58813;58814;58815;58816;58817;58818;58819;58820;58821;58822;58823;58824 49211;49212;49213;49214;49215;49216;49217;49218;49219;49220;49221;49222;49223;49224;49225;49226;49227;49228;49229;49230;49231;49232;49233;49234;49235;49236;49237;49238;49239;49240;49241;49242;49243;49244;49245;49246;49247;49248;49249;49250;49251;49252;49253;49254 49220 44 8434600000 305620000 1295300000 TNAENEFVTIKK VEDYRNKYEDEINKRTNAENEFVTIKKDVD NKRTNAENEFVTIKKDVDGAYMTKVDLQAK R T N K K D 1 0 2 0 0 0 2 0 0 1 0 2 0 1 0 0 2 0 0 1 0 0 12 1 1392.7249 P04264;CON__P04264 P04264 278 289 KRT1 Keratin, type II cytoskeletal 1 yes no 2;3 1.4758E-17 189.17 By MS/MS By MS/MS By MS/MS 6.09 2.96 7 5 3 6 7 7 7 7 8 11 33 17 18 17959000000 14690000000 755200000 2514800000 + 13476 413 14163 58825;58826;58827;58828;58829;58830;58831;58832;58833;58834;58835;58836;58837;58838;58839;58840;58841;58842;58843;58844;58845;58846;58847;58848;58849;58850;58851;58852;58853;58854;58855;58856;58857;58858;58859;58860;58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871;58872;58873;58874;58875;58876;58877;58878;58879;58880;58881;58882;58883;58884;58885;58886;58887;58888;58889;58890;58891;58892 49255;49256;49257;49258;49259;49260;49261;49262;49263;49264;49265;49266;49267;49268;49269;49270;49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282;49283;49284;49285;49286;49287;49288;49289;49290;49291;49292;49293;49294;49295;49296;49297;49298;49299;49300;49301;49302;49303;49304;49305;49306;49307;49308;49309;49310;49311 49270 56 15039000000 672100000 1020900000 TNAENEFVTIKKDVDGAYMTK VEDYRNKYEDEINKRTNAENEFVTIKKDVD FVTIKKDVDGAYMTKVDLQAKLDNLQQEID R T N T K V 2 0 2 2 0 0 2 1 0 1 0 3 1 1 0 0 3 0 1 2 0 0 21 2 2373.1522 P04264;CON__P04264 P04264 278 298 KRT1 Keratin, type II cytoskeletal 1 yes no 3 1.813E-07 99.686 By MS/MS 8.5 0.5 1 1 2 9935600 9935600 0 0 + 13477 413 14164 58893;58894 49312;49313 49313 2 6758300 0 0 TNEGVIEFR RQAGEVTYADAHKERTNEGVIEFRSYSDMK DAHKERTNEGVIEFRSYSDMKRALDKLDGT R T N F R S 0 1 1 0 0 0 2 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 9 0 1063.5298 Q13247 Q13247 146 154 SRSF6 Serine/arginine-rich splicing factor 6 yes yes 2 8.0486E-06 152.47 By matching By MS/MS By MS/MS 5.67 0.745 3 2 1 1 2 3 62504000 1947300 32844000 27713000 13478 1234 14165 58895;58896;58897;58898;58899;58900 49314;49315;49316 49315 3 1560100 8605500 4022100 TNEKVELQELNDR FSLADAINTEFKNTRTNEKVELQELNDRFA TRTNEKVELQELNDRFANYIDKVRFLEQQN R T N D R F 0 1 2 1 0 1 3 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 1 1586.79 P08670;P17661 P08670 101 113 VIM;DES Vimentin;Desmin yes no 2;3 3.541E-27 204.09 By MS/MS By MS/MS 3.11 1.49 3 4 4 3 3 1 8 10 1048700000 0 106660000 942000000 13479 476 14166 58901;58902;58903;58904;58905;58906;58907;58908;58909;58910;58911;58912;58913;58914;58915;58916;58917;58918 49317;49318;49319;49320;49321;49322;49323;49324;49325;49326;49327;49328;49329;49330;49331;49332;49333;49334;49335 49324 19 0 39371000 148470000 TNETYGKLEAVQYK IQEIVDKVKPQLEEKTNETYGKLEAVQYKT KTNETYGKLEAVQYKTQVVAGTNYYIKVRA K T N Y K T 1 0 1 0 0 1 2 1 0 0 1 2 0 0 0 0 2 0 2 1 0 0 14 1 1642.8203 P01040 P01040 31 44 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2;3 2.4358E-125 271.32 By MS/MS By matching 5.91 3.03 2 2 2 2 2 2 2 2 2 4 20 2 294920000 292550000 0 2370300 13480 374 14167 58919;58920;58921;58922;58923;58924;58925;58926;58927;58928;58929;58930;58931;58932;58933;58934;58935;58936;58937;58938;58939;58940 49336;49337;49338;49339;49340;49341;49342;49343;49344;49345;49346;49347;49348;49349;49350;49351 49343 16 352380000 0 5184100 TNFISSHTEKPVR LGEERGPVLEVIVSRTNFISSHTEKPVRIV SRTNFISSHTEKPVRIVGLSTALANARDLA R T N V R I 0 1 1 0 0 0 1 0 1 1 0 1 0 1 1 2 2 0 0 1 0 0 13 1 1514.7841 Q8N3C0 Q8N3C0 1473 1485 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.0025149 87.18 By MS/MS By MS/MS 1 0 2 1 1 27482000 0 19389000 8092500 13481 1602 14168 58941;58942 49352;49353 49352 2 0 9477100 1743700 TNGKEPELLEPIPYEFMA LKRQPAPPREAHFVRTNGKEPELLEPIPYE KEPELLEPIPYEFMA_______________ R T N M A - 1 0 1 0 0 0 4 1 0 1 2 1 1 1 3 0 1 0 1 0 0 0 18 1 2077.0078 P46778 P46778 143 160 RPL21 60S ribosomal protein L21 yes yes 2 0.0014229 99.732 By matching By matching By MS/MS 6 1.15 1 1 1 3 2 1 3 85794000 4351900 765040 80677000 13482 829 14169;14170 58943;58944;58945;58946;58947;58948 49354;49355 49355 407 2 3408500 439290 14172000 TNHIYVSSDDIK EWRVRAISAANLHLRTNHIYVSSDDIKETG HLRTNHIYVSSDDIKETGYTYILPKNVLKK R T N I K E 0 0 1 2 0 0 0 0 1 2 0 1 0 0 0 2 1 0 1 1 0 0 12 0 1390.6729 Q6P2Q9 Q6P2Q9 2087 2098 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 6.1214E-05 143.97 By MS/MS By MS/MS 1 0 4 2 2 66440000 0 18663000 47777000 13483 1490 14171 58949;58950;58951;58952 49356;49357;49358;49359 49359 4 0 9122300 10294000 TNIDESAMPPPPPQGVK EEPSRLQESVMEASRTNIDESAMPPPPPQG IDESAMPPPPPQGVKRKAGQIDPEPVMPPQ R T N V K R 1 0 1 1 0 1 1 1 0 1 0 1 1 0 5 1 1 0 0 1 0 0 17 0 1776.8716 O60216 O60216 461 477 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 0.00072609 95.401 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 25521000 0 4793400 20728000 13484 219 14172 58953;58954;58955 49360;49361;49362 49360 3 0 2158500 4608200 TNIIPVLEDAR SHRAGRDLVNVAKKRTNIIPVLEDARHPLK AKKRTNIIPVLEDARHPLKYRMLIGMVDVI R T N A R H 1 1 1 1 0 0 1 0 0 2 1 0 0 0 1 0 1 0 0 1 0 0 11 0 1239.6823 A6NHQ2 A6NHQ2 220 230 FBLL1 rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1 yes yes 2 1.5857E-05 122.26 By MS/MS By MS/MS 5.25 0.829 1 1 2 1 3 338280000 0 37370000 300910000 13485 14 14173 58956;58957;58958;58959 49363;49364;49365;49366;49367 49364 5 0 12936000 44088000 TNKDEKDILR PCSGTGVISKDPAVKTNKDEKDILRCAHLQ DPAVKTNKDEKDILRCAHLQKELLLSAIDS K T N L R C 0 1 1 2 0 0 1 0 0 1 1 2 0 0 0 0 1 0 0 0 0 0 10 2 1230.6568 P46087 P46087 477 486 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 0.012434 75.416 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 12478000 0 5818300 6659400 13486 824 14174 58960;58961 49368;49369 49368 2 0 2620100 1291600 TNLASTVLSLK YRDEMLTTNVPEIQRTNLASTVLSLKAMGI EIQRTNLASTVLSLKAMGINDLLSFDFMDA R T N L K A 1 0 1 0 0 0 0 0 0 0 3 1 0 0 0 2 2 0 0 1 0 0 11 0 1145.6656 Q14562 Q14562 923 933 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 0.05557 72.478 By MS/MS 2 0 1 1 8381500 0 8381500 0 13487 1304 14175 58962 49370 49370 1 0 3774300 0 TNLDESDVQPVK GGVGFDINCGVRLLRTNLDESDVQPVKEQL LLRTNLDESDVQPVKEQLAQAMFDHIPVGV R T N V K E 0 0 1 2 0 1 1 0 0 0 1 1 0 0 1 1 1 0 0 2 0 0 12 0 1343.6569 Q9Y3I0 Q9Y3I0 129 140 RTCB tRNA-splicing ligase RtcB homolog yes yes 2 0.051674 69.346 By MS/MS By MS/MS 4 0 2 1 1 19978000 0 2120400 17857000 13488 2276 14176 58963;58964 49371;49372 49372 1 0 703700 2916700 TNLDESDVQPVKEQLAQAMFDHIPVGVGSK GGVGFDINCGVRLLRTNLDESDVQPVKEQL AQAMFDHIPVGVGSKGVIPMNAKDLEEALE R T N S K G 2 0 1 3 0 3 2 2 1 1 2 2 1 1 2 2 1 0 0 4 0 0 30 1 3251.6132 Q9Y3I0 Q9Y3I0 129 158 RTCB tRNA-splicing ligase RtcB homolog yes yes 3;4 5.2257E-15 84.152 By matching By MS/MS 3.25 0.829 1 1 2 1 3 39529000 0 1913300 37616000 13489 2276 14177 58965;58966;58967;58968 49373;49374 49374 2 0 861580 6247600 TNLIVNYLPQNMTQDEFK NGPLLGTNGATDDSKTNLIVNYLPQNMTQD IVNYLPQNMTQDEFKSLFGSIGDIESCKLV K T N F K S 0 0 3 1 0 2 1 0 0 1 2 1 1 1 1 0 2 0 1 1 0 0 18 0 2167.062 Q14576 Q14576 39 56 ELAVL3 ELAV-like protein 3 yes yes 3 0.00036193 84.14 By MS/MS By MS/MS 6 0 2 1 1 21514000 0 4488600 17026000 13490 1307 14178 58969;58970 49375;49376 49376 594 2 0 1553800 2547200 TNLIVNYLPQNMTQDELR YEDHMAEDCRGDIGRTNLIVNYLPQNMTQD IVNYLPQNMTQDELRSLFSSIGEVESAKLI R T N L R S 0 1 3 1 0 2 1 0 0 1 3 0 1 0 1 0 2 0 1 1 0 0 18 0 2161.0838 Q15717 Q15717 20 37 ELAVL1 ELAV-like protein 1 yes yes 2;3 1.7026E-114 265.03 By matching By MS/MS By MS/MS 6.1 0.539 1 7 2 1 3 6 243490000 1276000 92304000 149910000 13491 1380 14179;14180 58971;58972;58973;58974;58975;58976;58977;58978;58979;58980 49377;49378;49379;49380;49381;49382;49383;49384;49385;49386 49382 625 10 1699000 31952000 22406000 TNLLLQAHLSR PHKLNNPKFNDPHVKTNLLLQAHLSRMQLS PHVKTNLLLQAHLSRMQLSAELQSDTEEIL K T N S R M 1 1 1 0 0 1 0 0 1 0 4 0 0 0 0 1 1 0 0 0 0 0 11 0 1264.7252 O75643 O75643 1891 1901 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 9.1179E-06 151.83 By matching By MS/MS By MS/MS 1.25 0.433 6 2 2 2 4 117620000 4199500 24498000 88922000 13492 277 14181 58981;58982;58983;58984;58985;58986;58987;58988 49387;49388;49389;49390 49387 4 4199500 11974000 19210000 TNMQTMYEQSEWGWK GLEPATVDWAFDLTKTNMQTMYEQSEWGWK TNMQTMYEQSEWGWKDREKREEMTDDRAWY K T N W K D 0 0 1 0 0 2 2 1 0 0 0 1 2 0 0 1 2 2 1 0 0 0 15 0 1917.8026 Q86UY6 Q86UY6 79 93 NAA40 N-alpha-acetyltransferase 40 yes yes 2 0.00046787 144.1 By MS/MS 6.5 0.5 1 1 2 15777000 0 0 15777000 13493 1550 14182 58989;58990 49391 49391 1 0 0 2712900 TNPEIQSTLR RMAEAELVQEGKARKTNPEIQSTLRKRLYL GKARKTNPEIQSTLRKRLYLQ_________ K T N L R K 0 1 1 0 0 1 1 0 0 1 1 0 0 0 1 1 2 0 0 0 0 0 10 0 1157.6041 P31944 P31944 227 236 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 0.00035248 119.07 By MS/MS By MS/MS 5.7 3.1 1 1 1 1 1 1 1 1 2 9 1 166430000 162500000 0 3931900 13494 723 14183 58991;58992;58993;58994;58995;58996;58997;58998;58999;59000 49392;49393;49394;49395;49396;49397;49398;49399;49400;49401 49398 10 185430000 0 8599500 TNPSQLNAVEFLWDPAK LDLDIPMSVGIIDTRTNPSQLNAVEFLWDP PSQLNAVEFLWDPAKRTSAFIQVHCISTEF R T N A K R 2 0 2 1 0 1 1 0 0 0 2 1 0 1 2 1 1 1 0 1 0 0 17 0 1928.9632 Q9NZI7 Q9NZI7 162 178 UBP1 Upstream-binding protein 1 yes yes 2 0.00036519 97.86 By matching By MS/MS 4 0 2 1 1 7952200 3242200 0 4710100 13495 2103 14184 59001;59002 49402 49402 1 2529500 0 769310 TNPSQLNAVEFLWDPAKR LDLDIPMSVGIIDTRTNPSQLNAVEFLWDP SQLNAVEFLWDPAKRTSAFIQVHCISTEFT R T N K R T 2 1 2 1 0 1 1 0 0 0 2 1 0 1 2 1 1 1 0 1 0 0 18 1 2085.0643 Q9NZI7 Q9NZI7 162 179 UBP1 Upstream-binding protein 1 yes yes 3 0.00017635 89.982 By MS/MS 4 0 1 1 4208400 0 4208400 0 13496 2103 14185 59003 49403 49403 1 0 1396600 0 TNQELQEINR LGTDEDSLIEIICSRTNQELQEINRVYKEM IICSRTNQELQEINRVYKEMYKTDLEKDII R T N N R V 0 1 2 0 0 2 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 10 0 1243.6157 P07355;A6NMY6 P07355 136 145 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 2.5789E-49 219.51 By MS/MS By MS/MS By MS/MS 5.92 2.87 2 1 2 3 1 1 1 2 8 1 4 197630000 64742000 16598000 116290000 13497 459 14186 59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014;59015;59016 49404;49405;49406;49407;49408;49409;49410;49411;49412 49405 9 68116000 5745700 20585000 TNRPPLSLSR STFNQVVLKRLFMSRTNRPPLSLSRMIRKM LFMSRTNRPPLSLSRMIRKMKLPGRENKTA R T N S R M 0 2 1 0 0 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 0 0 10 1 1139.6411 Q07020 Q07020 56 65 RPL18 60S ribosomal protein L18 yes yes 2 3.4883E-16 183.95 By MS/MS By MS/MS 6.2 0.748 1 2 2 3 2 382410000 0 131780000 250630000 13498 1174 14187 59017;59018;59019;59020;59021 49413;49414;49415 49415 3 0 74383000 43654000 TNSILFYGR FHCNHPFLFFIRQNKTNSILFYGRFSSP__ FIRQNKTNSILFYGRFSSP___________ K T N G R F 0 1 1 0 0 0 0 1 0 1 1 0 0 1 0 1 1 0 1 0 0 0 9 0 1069.5556 P29508;P48594 P29508 378 386 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 0.0005485 117.4 By MS/MS 7 2 1 1 1 1 1 1 1 7 51978000 51978000 0 0 13499 700 14188 59022;59023;59024;59025;59026;59027;59028 49416;49417;49418;49419 49418 4 56566000 0 0 TNSTFNQVVLK YLRLLVKLYRFLARRTNSTFNQVVLKRLFM LARRTNSTFNQVVLKRLFMSRTNRPPLSLS R T N L K R 0 0 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 11 0 1249.6667 Q07020 Q07020 39 49 RPL18 60S ribosomal protein L18 yes yes 2 0.0003282 129.42 By MS/MS By MS/MS By MS/MS 6.75 1.71 1 1 1 3 1 1 1 4 3 639410000 0 181080000 458330000 13500 1174 14189 59029;59030;59031;59032;59033;59034;59035;59036 49420;49421;49422 49421 3 0 100410000 99666000 TNSTFNQVVLKR YLRLLVKLYRFLARRTNSTFNQVVLKRLFM ARRTNSTFNQVVLKRLFMSRTNRPPLSLSR R T N K R L 0 1 2 0 0 1 0 0 0 0 1 1 0 1 0 1 2 0 0 2 0 0 12 1 1405.7678 Q07020 Q07020 39 50 RPL18 60S ribosomal protein L18 yes yes 2;3 5.9216E-08 170.18 By MS/MS By MS/MS 7 0 4 2 2 189150000 0 158000000 31142000 13501 1174 14190 59037;59038;59039;59040 49423;49424;49425;49426;49427;49428 49428 6 0 90726000 5526000 TNTPVKEDWNVR PELLTHSTTEVTQPRTNTPVKEDWNVRITK QPRTNTPVKEDWNVRITKLRKQVEEIFNLK R T N V R I 0 1 2 1 0 0 1 0 0 0 0 1 0 0 1 0 2 1 0 2 0 0 12 1 1457.7263 P78347 P78347 556 567 GTF2I General transcription factor II-I yes yes 3 0.070717 42.789 By MS/MS 2 0.816 1 1 1 3 13755000 0 0 13755000 13502 1085 14191 59041;59042;59043 49429 49429 1 0 0 2936000 TNVALMCMLR TDENLLLCAPTGAGKTNVALMCMLREIGKH TGAGKTNVALMCMLREIGKHINMDGTINVD K T N L R E 1 1 1 0 1 0 0 0 0 0 2 0 2 0 0 0 1 0 0 1 0 0 10 0 1207.5876 O75643 O75643 510 519 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 9.8388E-11 164.77 By MS/MS 1 0 1 1 5472700 0 0 5472700 13503 277 14192 59044 49430 49430 1 0 0 1179200 TNVANFPGHSGPITSIAFSENGYYLATAADDSSVK GTMDSQIKIWDLKERTNVANFPGHSGPITS NGYYLATAADDSSVKLWDLRKLKNFKTLQL R T N V K L 5 0 3 2 0 0 1 3 1 2 1 1 0 2 2 5 3 0 2 2 0 0 35 0 3600.7009 Q9UMS4 Q9UMS4 383 417 PRPF19 Pre-mRNA-processing factor 19 yes yes 3 2.6961E-49 122.37 By MS/MS 4 0 1 1 22681000 0 0 22681000 13504 2199 14193 59045 49431;49432 49431 2 0 0 3704600 TNVFAPDYIAGVSPFVENDISSR QRFPQLRLSQKARQKTNVFAPDYIAGVSPF IAGVSPFVENDISSRSATLQVRDSTLGAGR K T N S R S 2 1 2 2 0 0 1 1 0 2 0 0 0 2 2 3 1 0 1 3 0 0 23 0 2497.2125 Q9ULX3 Q9ULX3 359 381 NOB1 RNA-binding protein NOB1 yes yes 2 1.2241E-10 103.13 By MS/MS 6 0 1 1 1742800 0 0 1742800 13505 2194 14194 59046 49433 49433 1 0 0 260740 TNVNGGAIALGHPLGGSGSR QYLAVERSLDLDISKTNVNGGAIALGHPLG GAIALGHPLGGSGSRITAHLVHELRRRGGK K T N S R I 2 1 2 0 0 0 0 6 1 1 2 0 0 0 1 2 1 0 0 1 0 0 20 0 1833.9446 P42765 P42765 341 360 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 3 0.0034738 53.909 By MS/MS 5 0 1 1 4755300 0 4755300 0 13506 809 14195 59047 49434 49434 1 0 1225800 0 TNVVTMPTAHPR EDVIPATQCLTPGIRTNVVTMPTAHPRIAP GIRTNVVTMPTAHPRIAPKASMAGASSSKE R T N P R I 1 1 1 0 0 0 0 0 1 0 0 0 1 0 2 0 3 0 0 2 0 0 12 0 1322.6765 Q13428 Q13428 1019 1030 TCOF1 Treacle protein yes yes 2;3 0.001477 112.83 By matching By MS/MS 1.6 0.8 3 1 1 1 4 40339000 631700 0 39707000 13507 1247 14196 59048;59049;59050;59051;59052 49435;49436 49435 2 631700 0 8536400 TNYDIVVR KKKKELKQSRQLSDKTNYDIVVRAKQMWEI SRQLSDKTNYDIVVRAKQMWEILRRKDCDK K T N V R A 0 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 2 0 0 8 0 978.51345 Q15397 Q15397 130 137 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.016148 87.323 By matching By MS/MS By MS/MS 3.25 0.433 3 1 1 1 2 29694000 2204500 8719900 18769000 13508 1362 14197 59053;59054;59055;59056 49437;49438 49437 2 2543500 3717300 3553400 TNYNDRYDEIR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG EAIRTNYNDRYDEIRRHWGGNVLGPKSVAR R T N I R R 0 2 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 11 1 1457.6535 P62424 P62424 224 234 RPL7A 60S ribosomal protein L7a yes yes 2;3 0.00068098 131.52 By MS/MS By MS/MS 4.8 2.04 1 1 1 1 4 2 4 6 316420000 0 45173000 271250000 13509 1026 14198 59057;59058;59059;59060;59061;59062;59063;59064;59065;59066 49439;49440;49441;49442;49443 49440 5 0 16076000 41202000 TNYNDRYDEIRR SEDKGALAKLVEAIRTNYNDRYDEIRRHWG AIRTNYNDRYDEIRRHWGGNVLGPKSVARI R T N R R H 0 3 2 2 0 0 1 0 0 1 0 0 0 0 0 0 1 0 2 0 0 0 12 2 1613.7546 P62424 P62424 224 235 RPL7A 60S ribosomal protein L7a yes yes 3;4 0.00021816 119.39 By matching By MS/MS By MS/MS 5.71 1.28 1 1 3 2 2 3 2 177790000 10379000 123210000 44195000 13510 1026 14199 59067;59068;59069;59070;59071;59072;59073 49444;49445;49446 49445 3 11200000 42819000 6757300 TPAAAAAMNLASPR RTPAIPTAVNLADSRTPAAAAAMNLASPRT RTPAAAAAMNLASPRTAVAPSAVNLADPRT R T P P R T 6 1 1 0 0 0 0 0 0 0 1 0 1 0 2 1 1 0 0 0 0 0 14 0 1340.6871 Q9UQ35 Q9UQ35 2261 2274 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 6.0306E-59 238.01 By MS/MS By MS/MS 1.8 0.98 3 2 3 2 53962000 0 21339000 32623000 13511 2219 14200;14201 59074;59075;59076;59077;59078 49447;49448;49449;49450;49451;49452;49453 49452 712 7 0 10144000 6799200 TPAALAALSLTGSGTPPTAANYPSSSR PRTPTAPAVNLAGARTPAALAALSLTGSGT SGTPPTAANYPSSSRTPQAPASANLVGPRS R T P S R T 6 1 1 0 0 0 0 2 0 0 3 0 0 0 4 5 4 0 1 0 0 0 27 0 2558.2976 Q9UQ35 Q9UQ35 2302 2328 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 3 1.2466E-26 115.11 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 4 1 33734000 0 24697000 9037300 13512 2219 14202 59079;59080;59081;59082;59083 49454;49455;49456;49457;49458;49459 49457 6 0 10941000 1752800 TPAAPASPAAVPSEGSGGSTTGWR CSGVARARARNAAPRTPAAPASPAAVPSEG AVPSEGSGGSTTGWRAREEQPPSVAEGYAS R T P W R A 5 1 0 0 0 0 1 4 0 0 0 0 0 0 4 4 3 1 0 1 0 0 24 0 2211.0556 P07199 P07199 150 173 CENPB Major centromere autoantigen B yes yes 2 8.8029E-94 243.83 By MS/MS 3 0 1 1 8782800 0 0 8782800 13513 455 14203 59084 49460 49460 1 0 0 1703500 TPAEASSTGQTGPQSAL ESGPPPESMPKMPPRTPAEASSTGQTGPQS AEASSTGQTGPQSAL_______________ R T P A L - 3 0 0 0 0 2 1 2 0 0 1 0 0 0 2 3 3 0 0 0 0 0 17 0 1601.7533 Q9Y676 Q9Y676 242 258 MRPS18B 28S ribosomal protein S18b, mitochondrial yes yes 2 9.8233E-06 116.01 By MS/MS By MS/MS By matching 6 0 3 1 1 1 17455000 4821300 5737200 6896500 13514 2307 14204 59085;59086;59087 49461;49462 49461 2 6419600 1986000 1031800 TPAFAESVTEGDVR FRTTAVCKDDLVTVKTPAFAESVTEGDVRW KTPAFAESVTEGDVRWEKAVGDTVAEDEVV K T P V R W 2 1 0 1 0 0 2 1 0 0 0 0 0 1 1 1 2 0 0 2 0 0 14 0 1477.7049 P36957 P36957 75 88 DLST Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial yes yes 2 3.5724E-26 206.36 By MS/MS 4 0.816 1 1 1 3 23159000 0 0 23159000 13515 765 14205 59088;59089;59090 49463 49463 1 0 0 3676200 TPAILYTYSGLR PPPVRQEPSPKPNNKTPAILYTYSGLRNRR NNKTPAILYTYSGLRNRRAAVYVGSFSWWT K T P L R N 1 1 0 0 0 0 0 1 0 1 2 0 0 0 1 1 2 0 2 0 0 0 12 0 1353.7293 Q8N684 Q8N684 67 78 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 yes yes 2 4.4656E-73 246.41 By matching By MS/MS By MS/MS 3.86 1.55 2 1 2 2 1 3 3 101040000 2645900 43589000 54809000 13516 1610 14206 59091;59092;59093;59094;59095;59096;59097 49464;49465;49466;49467;49468 49467 5 3188000 14950000 9100800 TPAIPTAVNLADSR IPAASAAAMNLASARTPAIPTAVNLADSRT RTPAIPTAVNLADSRTPAAAAAMNLASPRT R T P S R T 3 1 1 1 0 0 0 0 0 1 1 0 0 0 2 1 2 0 0 1 0 0 14 0 1424.7623 Q9UQ35 Q9UQ35 2247 2260 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.00037879 142.07 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 1 3 84488000 4068000 26859000 53560000 13517 2219 14207 59098;59099;59100;59101;59102 49469;49470 49469 2 4068000 13129000 11201000 TPALISDYKEYHTDTTVK YKEQVLEPMLNGTDKTPALISDYKEYHTDT LISDYKEYHTDTTVKFVVKMTEEKLAQAEA K T P V K F 1 0 0 2 0 0 1 0 1 1 1 2 0 0 1 1 4 0 2 1 0 0 18 1 2081.0317 Q02880 Q02880 971 988 TOP2B DNA topoisomerase 2-beta yes yes 3 3.7235E-09 134.21 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 25537000 0 7383800 18153000 13518 1150 14208 59103;59104;59105 49471;49472;49473 49471 3 0 3484900 3911400 TPALVFEHVNNTDFK NIITLADIVKDPVSRTPALVFEHVNNTDFK TPALVFEHVNNTDFKQLYQTLTDYDIRFYM R T P F K Q 1 0 2 1 0 0 1 0 1 0 1 1 0 2 1 0 2 0 0 2 0 0 15 0 1730.8628 P68400;Q8NEV1 P68400 108 122 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2;3 4.8492E-18 194.29 By matching By MS/MS 5.25 0.433 3 1 1 3 78517000 0 2761400 75755000 13519 1080 14209 59106;59107;59108;59109 49474;49475;49476 49475 3 0 711810 10673000 TPALVNAAVTYSKPR ______________________________ TPALVNAAVTYSKPRLATFWYYAKVELVPP K T P P R L 3 1 1 0 0 0 0 0 0 0 1 1 0 0 2 1 2 0 1 2 0 0 15 1 1586.878 O75964 O75964 12 26 ATP5L ATP synthase subunit g, mitochondrial yes yes 3 0.0001113 110.9 By MS/MS By MS/MS 10 0 2 1 1 13765000 0 4911800 8853500 13520 294 14210 59110;59111 49477;49478 49477 2 0 24850000 19363000 TPANEKVEIQK ESEDEIPQLVPIGKKTPANEKVEIQKHATG IGKKTPANEKVEIQKHATGKKSPAKSPNPS K T P Q K H 1 0 1 0 0 1 2 0 0 1 0 2 0 0 1 0 1 0 0 1 0 0 11 1 1255.6772 O76021 O76021 375 385 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 3 0.024172 63.727 By MS/MS 2.67 1.25 1 1 1 3 9415500 0 0 9415500 13521 295 14211 59112;59113;59114 49479 49479 1 0 0 1814300 TPAQFDADELR ALTGHLEEVVLALLKTPAQFDADELRAAMK ALLKTPAQFDADELRAAMKGLGTDEDTLIE K T P L R A 2 1 0 2 0 1 1 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 11 0 1261.5939 P04083 P04083 114 124 ANXA1 Annexin A1 yes yes 2 0.00032842 130.98 By MS/MS By MS/MS 3.5 2.5 1 1 1 1 16509000 9647400 6862000 0 13522 410 14212 59115;59116 49480;49481 49480 2 9647400 2375400 0 TPAQYDASELK ALSGHLETVILGLLKTPAQYDASELKASMK GLLKTPAQYDASELKASMKGLGTDEDSLIE K T P L K A 2 0 0 1 0 1 1 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 11 0 1221.5877 P07355;A6NMY6 P07355 105 115 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 2.5702E-19 191.24 By MS/MS By MS/MS By MS/MS 6 2.7 1 1 1 1 1 3 2 1 1 2 9 1 4 217750000 72204000 21419000 124120000 13523 459 14213 59117;59118;59119;59120;59121;59122;59123;59124;59125;59126;59127;59128;59129;59130 49482;49483;49484;49485;49486;49487;49488;49489;49490;49491;49492;49493;49494 49491 11 82645000 7414600 23958000 TPASINATPANINLADLTR DPVPGITPSSSSRTRTPASINATPANINLA INATPANINLADLTRAVNALPQNMTSQMFS R T P T R A 4 1 3 1 0 0 0 0 0 2 2 0 0 0 2 1 3 0 0 0 0 0 19 0 1952.0327 Q7KZ85 Q7KZ85 1532 1550 SUPT6H Transcription elongation factor SPT6 yes yes 2 2.7233E-24 144.8 By MS/MS 1 0 1 1 3066600 0 0 3066600 13524 1517 14214 59131 49495 49495 0 0 0 660750 TPASPVVHIR AGGGGGGENYDDPHKTPASPVVHIRGLIDG DDPHKTPASPVVHIRGLIDGVVEADLVEAL K T P I R G 1 1 0 0 0 0 0 0 1 1 0 0 0 0 2 1 1 0 0 2 0 0 10 0 1075.6138 P14866 P14866 98 107 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 1.2943E-37 205.7 By MS/MS By MS/MS By MS/MS 3.6 0.49 2 3 1 2 2 69078000 9850900 35414000 23813000 13525 565 14215 59132;59133;59134;59135;59136 49496;49497;49498;49499 49499 4 7685400 12368000 3889400 TPASTPVSGTPQASPMIER IKVPEKIMNMIEEIKTPASTPVSGTPQASP TPVSGTPQASPMIERSNVVRKDYDTLSKCS K T P E R S 2 1 0 0 0 1 1 1 0 1 0 0 1 0 4 3 3 0 0 1 0 0 19 0 1925.9517 Q9UHR4 Q9UHR4 248 266 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 yes yes 2 7.489E-17 178.58 By MS/MS 6 0 1 1 7870700 0 0 7870700 13526 2154 14216 59137 49500 49500 1 0 0 1177500 TPATAPVPAR SPSVPKRPKLPAPTRTPATAPVPARAQGAV PAPTRTPATAPVPARAQGAVTGKPRGEGTE R T P A R A 3 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 2 0 0 1 0 0 10 0 979.54508 P18887 P18887 281 290 XRCC1 DNA repair protein XRCC1 yes yes 2 0.010545 88.37 By matching By MS/MS 3 0.816 1 1 1 1 2 8140700 0 742680 7398000 13527 603 14217 59138;59139;59140 49501 49501 1 0 334440 1397900 TPEEGGYSYDISEK EDGDYSYEIIEKTTRTPEEGGYSYDISEKT RTPEEGGYSYDISEKTTSPPEVSGYSYEKT R T P E K T 0 0 0 1 0 0 3 2 0 1 0 1 0 0 1 2 1 0 2 0 0 0 14 0 1573.6784 P46821 P46821 1949 1962 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.016346 76.255 By MS/MS 1 0 1 1 2518900 0 2518900 0 13528 834 14218 59141 49502 49502 1 0 1231200 0 TPEEVIEYSAVFWER GRDDIENIAREVEGKTPEEVIEYSAVFWER TPEEVIEYSAVFWERCNELQDIEKIMAQIE K T P E R C 1 1 0 0 0 0 4 0 0 1 0 0 0 1 1 1 1 1 1 2 0 0 15 0 1853.8836 O60264 O60264 876 890 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 3 0.00015574 98.943 By matching By MS/MS 1.5 0.5 1 1 1 1 3810000 0 500930 3309100 13529 223 14219 59142;59143 49503 49503 1 0 244850 747780 TPEILTVNSIGQLK DNADSSTLHAVTFLRTPEILTVNSIGQLKI RTPEILTVNSIGQLKIWDFRQQGNEPSQIL R T P L K I 0 0 1 0 0 1 1 1 0 2 2 1 0 0 1 1 2 0 0 1 0 0 14 0 1511.8559 Q8NFH3 Q8NFH3 183 196 NUP43 Nucleoporin Nup43 yes yes 2 5.9846E-89 255.7 By MS/MS 5 0 1 1 17415000 0 0 17415000 13530 1641 14220 59144 49504 49504 1 0 0 2429100 TPEITVSIIK SKALDRVLDPTCTIKTPEITVSIIKELNRR TCTIKTPEITVSIIKELNRRGVLANALAGR K T P I K E 0 0 0 0 0 0 1 0 0 3 0 1 0 0 1 1 2 0 0 1 0 0 10 0 1099.6489 Q8TED0 Q8TED0 389 398 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.00049537 135.71 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 51435000 0 27430000 24005000 13531 1665 14221 59145;59146;59147 49505;49506 49506 2 0 9103200 3972900 TPEIVAPQSAHAAFNK ACKAYRDLAFEKGIKTPEIVAPQSAHAAFN PEIVAPQSAHAAFNKAASYFGMKIVRVPLT K T P N K A 4 0 1 0 0 1 1 0 1 1 0 1 0 1 2 1 1 0 0 1 0 0 16 0 1679.8631 O95470 O95470 232 247 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 2 2.4547E-08 167.2 By MS/MS 4 0 1 1 15835000 0 0 15835000 13532 328 14222 59148 49507 49507 1 0 0 2586300 TPEPVVPTAPELQPSTSTDQPVTSEPTYQATR TSQATRGRKNRSSVKTPEPVVPTAPELQPS TDQPVTSEPTYQATRGRKNRSSVKTPEPVV K T P T R G 2 1 0 1 0 3 3 0 0 0 1 0 0 0 7 3 7 0 1 3 0 0 32 0 3423.6682 Q14676 Q14676 1239 1270 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 1.8102E-48 136.14 By MS/MS By matching 1.5 0.5 1 1 1 1 8429800 0 4057500 4372400 13533 1310 14223 59149;59150 49508 49508 1 0 1983200 988070 TPEPVVPTAPEPHPTTSTDQPVTPK TSRATRCRTNRSSVKTPEPVVPTAPEPHPT EPHPTTSTDQPVTPKLTSRATRRKTNRSSV K T P P K L 1 0 0 1 0 1 2 0 1 0 0 1 0 0 8 1 6 0 0 3 0 0 25 0 2622.3177 Q14676 Q14676 1608 1632 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 4.158E-25 126.04 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 88926000 0 24223000 64703000 13534 1310 14224 59151;59152;59153;59154;59155;59156 49509;49510;49511;49512;49513 49509 5 0 11269000 13926000 TPEQVAEEEYLLQELR HERRRKEQLERLYNRTPEQVAEEEYLLQEL PEQVAEEEYLLQELRKIEARKKEREKRSQD R T P L R K 1 1 0 0 0 2 5 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 16 0 1945.9633 Q9NPF5 Q9NPF5 237 252 DMAP1 DNA methyltransferase 1-associated protein 1 yes yes 2 3.6214E-27 205.96 By MS/MS 4 0 1 1 9641400 0 0 9641400 13535 2027 14225 59157 49514 49514 1 0 0 1574800 TPESIVPIAPELQPSTSR TSRATRGRTNRSSVKTPESIVPIAPELQPS SIVPIAPELQPSTSRNQLVTPEPTSRATRC K T P S R N 1 1 0 0 0 1 2 0 0 2 1 0 0 0 4 3 2 0 0 1 0 0 18 0 1921.0157 Q14676 Q14676 1567 1584 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 2.8635E-17 184.21 By MS/MS 1 0 1 1 10885000 0 0 10885000 13536 1310 14226 59158 49515 49515 1 0 0 2345200 TPESKPTILVK NMGWADAMAKVLNKKTPESKPTILVKNKKL LNKKTPESKPTILVKNKKLEKEKEKLKQER K T P V K N 0 0 0 0 0 0 1 0 0 1 1 2 0 0 2 1 2 0 0 1 0 0 11 1 1211.7125 Q9Y3B9 Q9Y3B9 104 114 RRP15 RRP15-like protein yes yes 3 0.023942 63.864 By MS/MS 5 0 1 1 5815100 0 0 5815100 13537 2267 14227 59159 49516 49516 1 0 0 811110 TPETLLPFAEAEAFLK GFSTNGPSGDKSLSRTPETLLPFAEAEAFL PETLLPFAEAEAFLKKAVVQSPQVTEVL__ R T P L K K 3 0 0 0 0 0 3 0 0 0 3 1 0 2 2 0 2 0 0 0 0 0 16 0 1775.9346 Q3KQU3 Q3KQU3 813 828 MAP7D1 MAP7 domain-containing protein 1 yes yes 2 0.010246 72.34 By MS/MS 2 0 1 1 1014700 0 1014700 0 13538 1411 14228 59160 49517 49517 1 0 456930 0 TPETLLPFAEAEAFLKK GFSTNGPSGDKSLSRTPETLLPFAEAEAFL ETLLPFAEAEAFLKKAVVQSPQVTEVL___ R T P K K A 3 0 0 0 0 0 3 0 0 0 3 2 0 2 2 0 2 0 0 0 0 0 17 1 1904.0295 Q3KQU3 Q3KQU3 813 829 MAP7D1 MAP7 domain-containing protein 1 yes yes 3 2.5366E-05 73.279 By MS/MS 2 0 1 1 0 0 0 0 13539 1411 14229 59161 49518 49518 1 0 0 0 TPETLVPTAPK TSRATRGRKNRSSGKTPETLVPTAPKLEPS SSGKTPETLVPTAPKLEPSTSTDQPVTPEP K T P P K L 1 0 0 0 0 0 1 0 0 0 1 1 0 0 3 0 3 0 0 1 0 0 11 0 1152.639 Q14676 Q14676 1403 1413 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 7.2902E-14 182.39 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 1 3 40929000 2106100 9403000 29420000 13540 1310 14230 59162;59163;59164;59165;59166 49519;49520;49521;49522;49523 49520 5 2106100 4596100 6337700 TPETVVPTALELQPSTSTDRPVTSEPTSQATR TSQVTRGRKSRSSVKTPETVVPTALELQPS TDRPVTSEPTSQATRGRKNRSSVKTPEPVV K T P T R G 2 2 0 1 0 2 3 0 0 0 2 0 0 0 5 4 8 0 0 3 0 0 32 1 3395.7056 Q14676 Q14676 1198 1229 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3;4 1.6699E-55 171.22 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 24429000 0 8215200 16214000 13541 1310 14231 59167;59168;59169 49524;49525 49524 2 0 4015500 3565900 TPETVVPTAPELQASASTDQPVTSEPTSR TSQATRGRTDRSSVKTPETVVPTAPELQAS SASTDQPVTSEPTSRTTRGRKNRSSVKTPE K T P S R T 3 1 0 1 0 2 3 0 0 0 1 0 0 0 5 4 6 0 0 3 0 0 29 0 2995.4622 Q14676 Q14676 1485 1513 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 7.6735E-39 136.53 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 20892000 0 5310100 15582000 13542 1310 14232 59170;59171;59172 49526;49527 49527 2 0 2595500 3407200 TPETVVPTAPELQISTSTDQPVTPKPTSR TSRTTRSRTNMSSVKTPETVVPTAPELQIS STSTDQPVTPKPTSRTTRSRTNMSSVKNPE K T P S R T 1 1 0 1 0 2 2 0 0 1 1 1 0 0 6 3 7 0 0 3 0 0 29 1 3076.5928 Q14676 Q14676 1321 1349 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 1.7217E-98 229.76 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 44167000 0 20670000 23496000 13543 1310 14233 59173;59174;59175;59176 49528;49529;49530 49530 3 0 9808900 5157800 TPETVVPTAPELQPSTSTDQPVTPEPTSQATR TSQATRGRTNRSSVKTPETVVPTAPELQPS TDQPVTPEPTSQATRGRTDRSSVKTPETVV K T P T R G 2 1 0 1 0 3 3 0 0 0 1 0 0 0 7 3 8 0 0 3 0 0 32 0 3361.6525 Q14676 Q14676 1444 1475 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 2.2398E-41 126.88 By MS/MS 1.5 0.5 1 1 2 8141300 0 8141300 0 13544 1310 14234 59177;59178 49531 49531 1 0 3876800 0 TPEVDDEALEK SAEPEQSLACQCLVRTPEVDDEALEKFDKA CLVRTPEVDDEALEKFDKALKALPMHIRLS R T P E K F 1 0 0 2 0 0 3 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 11 0 1244.5772 CON__P02754 CON__P02754 125 135 yes yes 2 2.0032E-09 164.97 By MS/MS 5 4 1 1 2 29927000 29927000 0 0 + 13545 43 14235 59179;59180 49532;49533 49533 2 26713000 0 0 TPEVDDEALEKFDK SAEPEQSLACQCLVRTPEVDDEALEKFDKA RTPEVDDEALEKFDKALKALPMHIRLSFNP R T P D K A 1 0 0 3 0 0 3 0 0 0 1 2 0 1 1 0 1 0 0 1 0 0 14 1 1634.7675 CON__P02754 CON__P02754 125 138 yes yes 2;3 1.2547E-71 242.82 By MS/MS By matching By matching 2.33 1.37 2 2 1 1 4 1 1 32923000 23362000 5007700 4553900 + 13546 43 14236 59181;59182;59183;59184;59185;59186 49534;49535;49536 49535 3 22685000 2255000 883230 TPEVTCVVVDVSHEDPEVK FLFPPKPKDTLMISRTPEVTCVVVDVSHED TCVVVDVSHEDPEVKFNWYVDGVEVHNAKT R T P V K F 0 0 0 2 1 0 3 0 1 0 0 1 0 0 2 1 2 0 0 6 0 0 19 0 2138.0201 P0DOX5;P01857 P0DOX5 258 276 IGHG1 Ig gamma-1 chain C region yes no 3 6.5481E-07 108.14 By MS/MS 6.5 2.5 1 1 2 40845000 40845000 0 0 13547 381 14237 59187;59188 49537;49538 49537 2 24534000 0 0 TPEYLHIDQR LRTGDKATVHFRFIKTPEYLHIDQRLVFRE FRFIKTPEYLHIDQRLVFREGRTKAVGTIT K T P Q R L 0 1 0 1 0 1 1 0 1 1 1 0 0 0 1 0 1 0 1 0 0 0 10 0 1270.6306 O00178 O00178 547 556 GTPBP1 GTP-binding protein 1 yes yes 3 0.025911 58.676 By MS/MS 2.5 0.5 1 1 2 11787000 0 0 11787000 13548 110 14238 59189;59190 49539 49539 1 0 0 2352600 TPFGAYGGLLK ______________________________ AAKRTPFGAYGGLLKDFTATDLSEFAAKAA R T P L K D 1 0 0 0 0 0 0 3 0 0 2 1 0 1 1 0 1 0 1 0 0 0 11 0 1122.6073 P42765 P42765 15 25 ACAA2 3-ketoacyl-CoA thiolase, mitochondrial yes yes 2 0.040414 76.1 By MS/MS 5 0 1 1 11540000 0 11540000 0 13549 809 14239 59191 49540 49540 1 0 2974600 0 TPFLLSGTSYK AKPNIRNVVVVDGVRTPFLLSGTSYKDLMP DGVRTPFLLSGTSYKDLMPHDLARAALTGL R T P Y K D 0 0 0 0 0 0 0 1 0 0 2 1 0 1 1 2 2 0 1 0 0 0 11 0 1212.639 P55084 P55084 62 72 HADHB Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase yes yes 2 0.017144 85.807 By MS/MS 4 0 1 1 24687000 0 0 24687000 13550 938 14240 59192 49541 49541 1 0 0 4032200 TPGPGAQSALR ALHIKLRATGGNRTKTPGPGAQSALRALAR NRTKTPGPGAQSALRALARSGMKIGRIEDV K T P L R A 2 1 0 0 0 1 0 2 0 0 1 0 0 0 2 1 1 0 0 0 0 0 11 0 1053.5567 P62263 P62263 107 117 RPS14 40S ribosomal protein S14 yes yes 2 0.00012829 139.98 By matching By MS/MS By MS/MS 7.6 1.36 1 2 1 1 1 2 2 45881000 1322400 24144000 20415000 13551 1012 14241 59193;59194;59195;59196;59197 49542;49543;49544 49543 3 1760800 12376000 13981000 TPHPVLTPVAANQAK PSTAMGSSVPYSTAKTPHPVLTPVAANQAK TPHPVLTPVAANQAKQGSLINSLKPSGPTP K T P A K Q 3 0 1 0 0 1 0 0 1 0 1 1 0 0 3 0 2 0 0 2 0 0 15 0 1542.8518 P35658 P35658 1150 1164 NUP214 Nuclear pore complex protein Nup214 yes yes 3 0.0089157 60.178 By MS/MS 1 0 1 1 14254000 0 0 14254000 13552 757 14242 59198 49545 49545 1 0 0 3071200 TPHVLVLGSGVYR LYLTYWGTTHDLTFRTPHVLVLGSGVYRIG FRTPHVLVLGSGVYRIGSSVEFDWCAVGCI R T P Y R I 0 1 0 0 0 0 0 2 1 0 2 0 0 0 1 1 1 0 1 3 0 0 13 0 1396.7827 P27708 P27708 932 944 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 3 0.0013514 93.766 By MS/MS 1 0 1 1 10630000 0 10630000 0 13553 681 14243 59199 49546 49546 1 0 5195800 0 TPIGSFLGSLSLLPATK SKPTLKEVVIVSATRTPIGSFLGSLSLLPA IGSFLGSLSLLPATKLGSIAIQGAIEKAGI R T P T K L 1 0 0 0 0 0 0 2 0 1 4 1 0 1 2 3 2 0 0 0 0 0 17 0 1700.9713 P24752 P24752 50 66 ACAT1 Acetyl-CoA acetyltransferase, mitochondrial yes yes 2 1.642E-05 109.51 By MS/MS 5.5 0.5 1 1 2 3570900 0 3570900 0 13554 651 14244 59200;59201 49547 49547 1 0 951330 0 TPIGTPAMNMATPTPGHIMSMTPEQLQAWR ASQMGGSTPVLTPGKTPIGTPAMNMATPTP GHIMSMTPEQLQAWRWEREIDERNRPLSDE K T P W R W 3 1 1 0 0 2 1 2 1 2 1 0 4 0 5 1 5 1 0 0 0 0 30 0 3264.5552 O75533 O75533 358 387 SF3B1 Splicing factor 3B subunit 1 yes yes 3 1.4773E-50 150.26 By MS/MS By MS/MS 1.8 0.4 1 4 3 2 46639000 0 26622000 20017000 13555 270 14245;14246 59202;59203;59204;59205;59206 49548;49549;49550;49551 49551 105;106 4 0 11988000 4472900 TPIIIIPAATTSLITMLNAK VSQARPPPNQKKGSRTPIIIIPAATTSLIT IPAATTSLITMLNAKDLLQDLKFVPSDEKK R T P A K D 3 0 1 0 0 0 0 0 0 5 2 1 1 0 2 1 4 0 0 0 0 0 20 0 2081.217 Q6P1J9 Q6P1J9 359 378 CDC73 Parafibromin yes yes 2;3 2.8152E-07 106.29 By MS/MS By MS/MS 3.6 0.49 2 3 1 4 11776000 0 916060 10860000 13556 1486 14247 59207;59208;59209;59210;59211 49552;49553;49554 49554 3 0 304010 2040100 TPIPLLLR SLQPKGYTLATTQVKTPIPLLLRGQLREYQ LATTQVKTPIPLLLRGQLREYQHIGLDWLV K T P L R G 0 1 0 0 0 0 0 0 0 1 3 0 0 0 2 0 1 0 0 0 0 0 8 0 921.60114 Q6ZRS2 Q6ZRS2 608 615 SRCAP Helicase SRCAP yes yes 2 0.0069438 97.473 By MS/MS By MS/MS 1 0 2 1 1 5016300 0 1598500 3417900 13557 1509 14248 59212;59213 49555;49556 49555 2 0 781310 736430 TPIQVLHEYGMK GTFSLGKMITAKPGKTPIQVLHEYGMKTKN PGKTPIQVLHEYGMKTKNIPVYECERSDVQ K T P M K T 0 0 0 0 0 1 1 1 1 1 1 1 1 0 1 0 1 0 1 1 0 0 12 0 1414.7279 O75569 O75569 34 45 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A yes yes 3 0.010021 71.888 By MS/MS By MS/MS 6 0 2 1 1 18988000 0 5455700 13532000 13558 273 14249 59214;59215 49557;49558 49558 2 0 1888600 2024600 TPISLLQEYGTR GLPSIEQMLAANPGKTPISLLQEYGTRIGK PGKTPISLLQEYGTRIGKTPVYDLLKAEGQ K T P T R I 0 1 0 0 0 1 1 1 0 1 2 0 0 0 1 1 2 0 1 0 0 0 12 0 1376.73 Q15633 Q15633 30 41 TARBP2 RISC-loading complex subunit TARBP2 yes yes 2 9.3651E-05 140.49 By MS/MS 5 0 1 1 5904000 0 5904000 0 13559 1375 14250 59216 49559 49559 1 0 1521900 0 TPIVGQPSIPGGPVR ASVESSSGEAFHVGKTPIVGQPSIPGGPVR TPIVGQPSIPGGPVRLCPGRIRYFKI____ K T P V R L 0 1 0 0 0 1 0 3 0 2 0 0 0 0 4 1 1 0 0 2 0 0 15 0 1473.8304 CON__P12763 CON__P12763 334 348 yes yes 2;3 2.6667E-89 250.72 By MS/MS By MS/MS By MS/MS 5.07 2.81 3 3 3 4 3 2 3 2 1 3 10 9 8 5134300000 2700200000 1482800000 951240000 + 13560 55 14251 59217;59218;59219;59220;59221;59222;59223;59224;59225;59226;59227;59228;59229;59230;59231;59232;59233;59234;59235;59236;59237;59238;59239;59240;59241;59242;59243 49560;49561;49562;49563;49564;49565;49566;49567;49568;49569;49570;49571;49572;49573;49574;49575;49576;49577;49578;49579;49580;49581;49582;49583;49584;49585;49586;49587;49588;49589;49590;49591;49592;49593;49594;49595;49596;49597;49598;49599 49565 38 2695300000 3469500000 613500000 TPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQSK TSRATRRKTNRSSVKTPKPVEPAASDLEPF QSVTPEAIAQGGQSKTLRSSTVRAMPVPTT K T P S K T 4 0 0 2 0 3 3 2 0 1 1 2 0 1 6 3 4 0 0 2 0 0 34 1 3492.726 Q14676 Q14676 1649 1682 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 3 2.4427E-25 92.589 By MS/MS By matching 1.5 0.5 1 1 1 1 8508700 0 4706300 3802300 13561 1310 14252 59244;59245 49600 49600 1 0 2300400 859250 TPLALAGSPTPK AKGLGHPPSSPLLKKTPLALAGSPTPKNPE LKKTPLALAGSPTPKNPEDKSPQLSLSPRP K T P P K N 2 0 0 0 0 0 0 1 0 0 2 1 0 0 3 1 2 0 0 0 0 0 12 0 1151.655 O95785 O95785 989 1000 WIZ Protein Wiz yes yes 2 8.937E-33 148.32 By MS/MS 2 0 1 1 0 0 0 0 13562 340 14253 59246 49601 49601 1 0 0 0 TPLENLVLQAK RLEKMVPFQVPEILRTPLENLVLQAKIHMP EILRTPLENLVLQAKIHMPEKTAVEFLSKA R T P A K I 1 0 1 0 0 1 1 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 11 0 1224.7078 Q7L2E3 Q7L2E3 814 824 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 3.3544E-36 215.14 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 42912000 0 14319000 28593000 13563 1522 14254 59247;59248;59249;59250 49602;49603;49604;49605;49606 49606 5 0 6447800 6301800 TPLEPPPIVVVVMGPPK QDLKTKKHHIPVVDRTPLEPPPIVVVVMGP LEPPPIVVVVMGPPKVGKSTLIQCLIRNFT R T P P K V 0 0 0 0 0 0 1 1 0 1 1 1 1 0 6 0 1 0 0 4 0 0 17 0 1769.0161 Q14692 Q14692 76 92 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 2 0.0085064 69.672 By MS/MS 5 0 1 1 897880 0 897880 0 13564 1315 14255 59251 49607 49607 1 0 231450 0 TPLEQEIFNLLHK AIAPIEHVLSGWKARTPLEQEIFNLLHKNK ARTPLEQEIFNLLHKNKQPVTDPLLTPVEK R T P H K N 0 0 1 0 0 1 2 0 1 1 3 1 0 1 1 0 1 0 0 0 0 0 13 0 1580.8562 Q9BVJ6;Q5TAP6 Q9BVJ6 182 194 UTP14A;UTP14C U3 small nucleolar RNA-associated protein 14 homolog A;U3 small nucleolar RNA-associated protein 14 homolog C yes no 3 0.00012187 118.87 By MS/MS By MS/MS 3.62 2 1 2 2 1 1 1 4 4 40865000 0 21029000 19836000 13565 1915 14256 59252;59253;59254;59255;59256;59257;59258;59259 49608;49609;49610;49611;49612;49613 49608 6 0 9351300 4266600 TPLFDQIIDMLR CNALETLLIHRDLLRTPLFDQIIDMLRVEQ LLRTPLFDQIIDMLRVEQVKIHAGPKFASY R T P L R V 0 1 0 2 0 1 0 0 0 2 2 0 1 1 1 0 1 0 0 0 0 0 12 0 1460.7697 P54886 P54886 627 638 ALDH18A1 Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase yes yes 2 0.009771 94.692 By MS/MS 3 0 1 1 1015700 0 0 1015700 13566 932 14257 59260 49614 49614 1 0 0 197000 TPLGDTTHTCPR HKPSNTKVDKRVELKTPLGDTTHTCPRCPE ELKTPLGDTTHTCPRCPEPKSCDTPPPCPR K T P P R C 0 1 0 1 1 0 0 1 1 0 1 0 0 0 2 0 4 0 0 0 0 0 12 0 1354.6299 P01860 P01860 102 113 IGHG3 Ig gamma-3 chain C region yes yes 3 0.0022533 90.697 By MS/MS 9 0 1 1 3323100 3323100 0 0 13567 383 14258 59261 49615 49615 1 1865300 0 0 TPLHEIALSIK RFERLETHMTPEMFRTPLHEIALSIKLLRL EMFRTPLHEIALSIKLLRLGGIGQFLAKAI R T P I K L 1 0 0 0 0 0 1 0 1 2 2 1 0 0 1 1 1 0 0 0 0 0 11 0 1220.7129 Q08211 Q08211 796 806 DHX9 ATP-dependent RNA helicase A yes yes 2;3 3.2778E-20 195.36 By MS/MS By MS/MS By MS/MS 2.4 1.2 4 5 3 2 1 1 5 9 386120000 4694200 84509000 296920000 13568 1182 14259 59262;59263;59264;59265;59266;59267;59268;59269;59270;59271;59272;59273;59274;59275;59276 49616;49617;49618;49619;49620;49621;49622;49623;49624;49625;49626;49627 49625 12 5655900 38421000 64770000 TPLMEAAENNHLEAVK VQAGANIDTCSEDQRTPLMEAAENNHLEAV PLMEAAENNHLEAVKYLIKAGALVDPKDAE R T P V K Y 3 0 2 0 0 0 3 0 1 0 2 1 1 0 1 0 1 0 0 1 0 0 16 0 1765.8669 Q9H9B1 Q9H9B1 808 823 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes yes 2 3.9575E-17 112.02 By MS/MS 1 0 1 1 0 0 0 0 13569 1998 14260 59277 49628 49628 1 0 0 0 TPLMEAVVNNHLEVAR LQAGANINAVDKQQRTPLMEAVVNNHLEVA PLMEAVVNNHLEVARYMVQRGGCVYSKEED R T P A R Y 2 1 2 0 0 0 2 0 1 0 2 0 1 0 1 0 1 0 0 3 0 0 16 0 1791.9302 Q96KQ7 Q96KQ7 720 735 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes yes 3 0.0019506 71.781 By MS/MS 1 0 1 1 3604700 0 0 3604700 13570 1805 14261 59278 49629 49629 1 0 0 776680 TPLSEAEFEEIMNR RGDYGPPGREMDTARTPLSEAEFEEIMNRN RTPLSEAEFEEIMNRNRAISSSAISRAVSD R T P N R N 1 1 1 0 0 0 4 0 0 1 1 0 1 1 1 1 1 0 0 0 0 0 14 0 1664.7716 Q16630 Q16630 407 420 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes yes 2 7.8029E-223 319.79 By MS/MS 2.5 0.5 1 1 2 19291000 0 0 19291000 13571 1393 14262 59279;59280 49630 49630 1 0 0 3865800 TPLTATLSK HGKTFTCTAAYPESKTPLTATLSKSGNTFR AYPESKTPLTATLSKSGNTFRPEVHLLPPP K T P S K S 1 0 0 0 0 0 0 0 0 0 2 1 0 0 1 1 3 0 0 0 0 0 9 0 930.5386 P01876 P01876 213 221 IGHA1 Ig alpha-1 chain C region yes yes 2 0.00067848 114.64 By MS/MS By matching By matching 7.57 1.59 1 1 1 2 1 1 5 1 1 156160000 114600000 7919200 33642000 13572 386 14263 59281;59282;59283;59284;59285;59286;59287 49631;49632 49632 2 143040000 3603000 5157700 TPLTQDPASITDNLLQLPAR LQTPTSTPAPGSATRTPLTQDPASITDNLL DPASITDNLLQLPARRKASDFF________ R T P A R R 2 1 1 2 0 2 0 0 0 1 4 0 0 0 3 1 3 0 0 0 0 0 20 0 2163.1535 Q96DF8 Q96DF8 450 469 DGCR14 Protein DGCR14 yes yes 3 2.9052E-11 116.51 By MS/MS 4 0 1 1 2735200 0 2735200 0 13573 1765 14264 59288 49633 49633 1 0 907720 0 TPMMSVPVLNTK PRLREILMVASANIKTPMMSVPVLNTKKAL NIKTPMMSVPVLNTKKALKRVKSLKKQLTR K T P T K K 0 0 1 0 0 0 0 0 0 0 1 1 2 0 2 1 2 0 0 2 0 0 12 0 1316.6832 O95602 O95602 1261 1272 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.026798 80.24 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 10107000 2765200 2689100 4653200 13574 330 14265 59289;59290;59291 49634 49634 1 2765200 1314400 1051500 TPMSVLQQAGGSMMDGPGPR RCRSPGMLEPLGSSRTPMSVLQQAGGSMMD LQQAGGSMMDGPGPRIPDHQRTSVPENHAQ R T P P R I 1 1 0 1 0 2 0 4 0 0 1 0 3 0 3 2 1 0 0 1 0 0 20 0 2015.9227 Q9UQ35 Q9UQ35 2144 2163 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2;3 6.3489E-36 200.16 By MS/MS By MS/MS 1.8 0.748 2 2 1 3 2 11763000 0 4953600 6809200 13575 2219 14266 59292;59293;59294;59295;59296 49635;49636 49635 2 0 2299800 1498300 TPMYGSQTPLQDGSR PMYGSQTPMYGSGSRTPMYGSQTPLQDGSR TPMYGSQTPLQDGSRTPHYGSQTPLHDGSR R T P S R T 0 1 0 1 0 2 0 2 0 0 1 0 1 0 2 2 2 0 1 0 0 0 15 0 1636.7515 O00267 O00267 784 798 SUPT5H Transcription elongation factor SPT5 yes yes 2 0.015398 98.105 By MS/MS 2 0 1 1 2162600 0 2162600 0 13576 115 14267 59297 49637 49637 0 0 973870 0 TPNPANQYQFDK DSVLSCLYPGDHGKKTPNPANQYQFDKVGI GKKTPNPANQYQFDKVGILTLSDYVLELGH K T P D K V 1 0 2 1 0 2 0 0 0 0 0 1 0 1 2 0 1 0 1 0 0 0 12 0 1421.6575 Q13769 Q13769 413 424 THOC5 THO complex subunit 5 homolog yes yes 2 7.0812E-10 117.14 By MS/MS 3 0 1 1 0 0 0 0 13577 1267 14268 59298 49638 49638 1 0 0 0 TPPLITDYR YKEQVLEPMLNGTEKTPPLITDYREYHTDT LNGTEKTPPLITDYREYHTDTTVKFVVKMT K T P Y R E 0 1 0 1 0 0 0 0 0 1 1 0 0 0 2 0 2 0 1 0 0 0 9 0 1074.571 P11388 P11388 950 958 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.0479E-41 210.1 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 190120000 5180000 24096000 160840000 13578 524 14269 59299;59300;59301;59302;59303;59304 49639;49640;49641;49642;49643 49641 5 5180000 11441000 34762000 TPPLITDYREYHTDTTVK YKEQVLEPMLNGTEKTPPLITDYREYHTDT LITDYREYHTDTTVKFVVKMTEEKLAEAER K T P V K F 0 1 0 2 0 0 1 0 1 1 1 1 0 0 2 0 5 0 2 1 0 0 18 1 2149.0691 P11388 P11388 950 967 TOP2A DNA topoisomerase 2-alpha yes yes 4 0.021304 42.639 By MS/MS 1.5 0.5 1 1 2 14681000 0 14681000 0 13579 524 14270 59305;59306 49644;49645 49645 2 0 6802400 0 TPPPVLIFAEK KEEAKMVYLLECLQKTPPPVLIFAEKKADV CLQKTPPPVLIFAEKKADVDAIHEYLLLKG K T P E K K 1 0 0 0 0 0 1 0 0 1 1 1 0 1 3 0 1 0 0 1 0 0 11 0 1210.6962 Q9UJV9 Q9UJV9 431 441 DDX41 Probable ATP-dependent RNA helicase DDX41 yes yes 2 0.02232 82.914 By MS/MS 3 0 1 1 18927000 0 0 18927000 13580 2171 14271 59307 49646 49646 1 0 0 3670900 TPPQLEALQELHPYMEGAQLR ELQNRRAGPATSPPKTPPQLEALQELHPYM ALQELHPYMEGAQLREVTLALLSLPETHLV K T P L R E 2 1 0 0 0 3 3 1 1 0 4 0 1 0 3 0 1 0 1 0 0 0 21 0 2420.2158 O60287 O60287 1101 1121 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 3 2.3563E-14 124.86 By MS/MS 1 0 1 1 12915000 0 0 12915000 13581 224 14272 59308 49647 49647 1 0 0 2782800 TPQAPASANLVGPR SGTPPTAANYPSSSRTPQAPASANLVGPRS RTPQAPASANLVGPRSAHATAPVNIAGSRT R T P P R S 3 1 1 0 0 1 0 1 0 0 1 0 0 0 3 1 1 0 0 1 0 0 14 0 1377.7365 Q9UQ35 Q9UQ35 2329 2342 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.00026802 150.46 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 91736000 0 19842000 71894000 13582 2219 14273 59309;59310;59311;59312 49648;49649;49650;49651 49648 3 0 9698600 14876000 TPQEAITDGLEIVVSPR PLSKTWELSLYELQRTPQEAITDGLEIVVS QEAITDGLEIVVSPRSLHSELMCPICLDML R T P P R S 1 1 0 1 0 1 2 1 0 2 1 0 0 0 2 1 2 0 0 2 0 0 17 0 1823.9629 Q99496 Q99496 27 43 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 2 5.7984E-05 101.2 By MS/MS 5 0 1 1 8326300 0 0 8326300 13583 1846 14274 59313 49652 49652 1 0 0 1161400 TPQGAVPAYLLDR KMHEKRNTKQKNDEKTPQGAVPAYLLDREG EKTPQGAVPAYLLDREGQSRAKVLSNMIKQ K T P D R E 2 1 0 1 0 1 0 1 0 0 2 0 0 0 2 0 1 0 1 1 0 0 13 0 1399.746 O95478 O95478 81 93 NSA2 Ribosome biogenesis protein NSA2 homolog yes yes 2 0.00012351 151.98 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 2 3 123460000 0 22030000 101430000 13584 329 14275 59314;59315;59316;59317;59318 49653;49654;49655 49653 3 0 7371000 15419000 TPQQLWYTHEK LIQNAKKSDIPEKPKTPQQLWYTHEKKVYL EKPKTPQQLWYTHEKKVYLKVRPDATTKEV K T P E K K 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 2 1 1 0 0 0 11 0 1429.699 P17480 P17480 201 211 UBTF Nucleolar transcription factor 1 yes yes 2;3 0.00032761 125.17 By MS/MS By MS/MS 3 1.41 1 3 2 2 1 3 6 161070000 0 24845000 136220000 13585 584 14276 59319;59320;59321;59322;59323;59324;59325;59326;59327 49656;49657;49658;49659;49660;49661;49662 49659 7 0 10851000 28083000 TPQQTSASQQMLNFPDK VLADTPSGLVPLQPKTPQQTSASQQMLNFP QQTSASQQMLNFPDKGKEKPTDMQNFGLRT K T P D K G 1 0 1 1 0 4 0 0 0 0 1 1 1 1 2 2 2 0 0 0 0 0 17 0 1919.9047 Q8TAQ2 Q8TAQ2 548 564 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 2 1.3935E-05 141.65 By matching By MS/MS 1.5 0.5 1 1 1 1 6574700 0 1559500 5015300 13586 1653 14277 59328;59329 49663 49663 1 0 762240 1133300 TPQVIGVMQSQNSSAGNR LIQLTSQNSSPNQQRTPQVIGVMQSQNSSA VIGVMQSQNSSAGNRGPRPLEQVTCYKCGE R T P N R G 1 1 2 0 0 3 0 2 0 1 0 0 1 0 1 3 1 0 0 2 0 0 18 0 1872.9112 O95639 O95639 218 235 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 yes yes 2 1.5241E-22 188.4 By MS/MS By matching 7 0 2 1 1 5948100 0 2797300 3150700 13587 333 14278 59330;59331 49664 49664 1 0 1606200 559080 TPSAAYLWVGTGASEAEK PKAGALNSNDAFVLKTPSAAYLWVGTGASE AAYLWVGTGASEAEKTGAQELLRVLRAQPV K T P E K T 4 0 0 0 0 0 2 2 0 0 1 1 0 0 1 2 2 1 1 1 0 0 18 0 1836.8894 P06396 P06396 598 615 GSN Gelsolin yes yes 2 5.0546E-12 166.6 By MS/MS 3 0 1 1 2361300 0 2361300 0 13588 440 14279 59332 49665 49665 1 0 1006600 0 TPSLTVFLLGQSAR VPRLKELINISKKPKTPSLTVFLLGQSARD KTPSLTVFLLGQSARDAERAKDILCRLEHT K T P A R D 1 1 0 0 0 1 0 1 0 0 3 0 0 1 1 2 2 0 0 1 0 0 14 0 1488.83 P24928 P24928 1136 1149 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.00046846 137.17 By MS/MS By MS/MS 1 0 2 1 1 6272800 0 1436200 4836700 13589 653 14280 59333;59334 49666;49667 49667 2 0 701980 1042100 TPSNEMTPVTIDLVK SDAKSQKTDNTVPFKTPSNEMTPVTIDLVK TPSNEMTPVTIDLVKKQLKDRLDSMKELHK K T P V K K 0 0 1 1 0 0 1 0 0 1 1 1 1 0 2 1 3 0 0 2 0 0 15 0 1643.844 Q9Y5B6 Q9Y5B6 378 392 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 2 5.2673E-05 158.59 By MS/MS By MS/MS 2 0 2 1 1 9000700 0 2159400 6841300 13590 2295 14281 59335;59336 49668;49669 49669 2 0 972390 1546000 TPSNGAEGLTPR QVVQTPNTVLSTPFRTPSNGAEGLTPRSGT PFRTPSNGAEGLTPRSGTTPKPVINSTPGR R T P P R S 1 1 1 0 0 0 1 2 0 0 1 0 0 0 2 1 2 0 0 0 0 0 12 0 1198.5942 Q99459 Q99459 415 426 CDC5L Cell division cycle 5-like protein yes yes 2 0.00097857 118.4 By MS/MS 2.5 0.5 1 1 2 4860500 0 4860500 0 13591 1843 14282 59337;59338 49670 49670 1 0 2149600 0 TPSPKEEDEEPESPPEK GKVGRPTASKASKEKTPSPKEEDEEPESPP SPKEEDEEPESPPEKKTSTSPPPEKSGDEG K T P E K K 0 0 0 1 0 0 6 0 0 0 0 2 0 0 5 2 1 0 0 0 0 0 17 1 1923.8585 Q9H1E3 Q9H1E3 202 218 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 3 0.0004099 88.385 By MS/MS 5.5 0.5 1 1 2 11049000 0 0 11049000 13592 1968 14283 59339;59340 49671;49672 49671 2 0 0 1583200 TPSPKEEDEEPESPPEKK GKVGRPTASKASKEKTPSPKEEDEEPESPP PKEEDEEPESPPEKKTSTSPPPEKSGDEGS K T P K K T 0 0 0 1 0 0 6 0 0 0 0 3 0 0 5 2 1 0 0 0 0 0 18 2 2051.9535 Q9H1E3 Q9H1E3 202 219 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 4 0.016741 46.663 By matching By MS/MS 5.67 0.471 1 2 1 2 11758000 0 1911300 9847100 13593 1968 14284 59341;59342;59343 49673;49674 49674 2 0 661610 1396500 TPSPLILDQNYINTK VINVFHHLRQLRGKRTPSPLILDQNYINTK TPSPLILDQNYINTKNQVIKAERRVLKELG R T P T K N 0 0 2 1 0 1 0 0 0 2 2 1 0 0 2 1 2 0 1 0 0 0 15 0 1715.9094 Q9UK58 Q9UK58 164 178 CCNL1 Cyclin-L1 yes yes 2 2.893E-08 94.547 By MS/MS 4 0 1 1 0 0 0 0 13594 2174 14285 59344 49675 49675 1 0 0 0 TPSSDVLVFDYTK RARYMPQNPCIIATKTPSSDVLVFDYTKHP TKTPSSDVLVFDYTKHPSKPDPSGECNPDL K T P T K H 0 0 0 2 0 0 0 0 0 0 1 1 0 1 1 2 2 0 1 2 0 0 13 0 1470.7242 Q09028;Q16576 Q09028 144 156 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 4.4286E-72 240.82 By MS/MS By MS/MS 5.43 1.18 2 2 1 2 3 4 360610000 0 141050000 219570000 13595 1188;1390 14286 59345;59346;59347;59348;59349;59350;59351 49676;49677;49678;49679;49680;49681;49682 49676 7 0 39863000 33349000 TPTAPAVNLAGAR RTAVAPSAVNLADPRTPTAPAVNLAGARTP PRTPTAPAVNLAGARTPAALAALSLTGSGT R T P A R T 4 1 1 0 0 0 0 1 0 0 1 0 0 0 2 0 2 0 0 1 0 0 13 0 1237.6779 Q9UQ35 Q9UQ35 2289 2301 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 6.0786E-18 135.55 By matching By MS/MS By MS/MS 3.5 2.4 3 2 2 2 1 1 1 2 6 4 123930000 5916200 67500000 50510000 13596 2219 14287 59352;59353;59354;59355;59356;59357;59358;59359;59360;59361;59362;59363 49683;49684;49685;49686;49687;49688;49689;49690 49690 8 6471200 30364000 10113000 TPTGEGLLDSPSK LCKNPCAMFAAGEIKTPTGEGLLDSPSKTM IKTPTGEGLLDSPSKTMSIKERLALLKKSG K T P S K T 0 0 0 1 0 0 1 2 0 0 2 1 0 0 2 2 2 0 0 0 0 0 13 0 1300.6511 O95425 O95425 1111 1123 SVIL Supervillin yes yes 2 1.8619E-07 169.82 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 37360000 2874600 19138000 15347000 13597 325 14288 59364;59365;59366;59367 49691;49692 49691 2 2874600 9354400 3343800 TPTPSTPGDTQPNTPAPVPPAEDGIK EENKKMSQPGSPSPKTPTPSTPGDTQPNTP PNTPAPVPPAEDGIKIEENSLKEEESIEGE K T P I K I 2 0 1 2 0 1 1 2 0 1 0 1 0 0 8 1 5 0 0 1 0 0 26 0 2584.2657 Q14839 Q14839 1540 1565 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 2.0437E-12 90.694 By MS/MS 1 0 1 1 6060400 0 6060400 0 13598 1321 14289 59368 49693 49693 1 0 2962200 0 TPTPVHYRPHGAK SRLPGHYLRSLEEERTPTPVHYRPHGAKFK ERTPTPVHYRPHGAKFKINPKNGQRERVED R T P A K F 1 1 0 0 0 0 0 1 2 0 0 1 0 0 3 0 2 0 1 1 0 0 13 1 1459.7684 Q13084 Q13084 37 49 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 3 0.048734 48.568 By MS/MS 6 0 1 1 605580 0 0 605580 13599 1218 14290 59369 49694 49694 1 0 0 90601 TPTQLEGATR CASCWIYWKKYGGLKTPTQLEGATRGTTEP YGGLKTPTQLEGATRGTTEPHSRGHLSRPE K T P T R G 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 3 0 0 0 0 0 10 0 1072.5513 O94776 O94776 406 415 MTA2 Metastasis-associated protein MTA2 yes yes 2 0.00056436 129.42 By MS/MS 2.5 0.5 1 1 2 5428400 0 0 5428400 13600 298 14291 59370;59371 49695 49695 1 0 0 1083200 TPTSSPASSPLVAK VAFDPEQKPLHGVLKTPTSSPASSPLVAKK KTPTSSPASSPLVAKKPLTTTPRRRPRAMD K T P A K K 2 0 0 0 0 0 0 0 0 0 1 1 0 0 3 4 2 0 0 1 0 0 14 0 1341.714 Q14684 Q14684 728 741 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.0006101 117.45 By MS/MS 4.5 2.5 1 1 2 8071700 0 8071700 0 13601 1313 14292 59372;59373 49696;49697 49697 2 0 4132700 0 TPVEEVPAAIAPFQGR YKLVNNGEKLEFLHKTPVEEVPAAIAPFQG PVEEVPAAIAPFQGRVLIGVGKLLRVYDLG K T P G R V 3 1 0 0 0 1 2 1 0 1 0 0 0 1 3 0 1 0 0 2 0 0 16 0 1680.8835 Q15393 Q15393 943 958 SF3B3 Splicing factor 3B subunit 3 yes yes 2;3 3.7645E-26 199.68 By matching By MS/MS By MS/MS 2.56 1.26 2 3 2 1 1 1 4 4 89318000 1200300 41477000 46641000 13602 1361 14293 59374;59375;59376;59377;59378;59379;59380;59381;59382 49698;49699;49700;49701;49702;49703;49704 49698 7 1200300 17980000 9756700 TPVEPEVAIHR ______________________________ DTGKTPVEPEVAIHRIRITLTSRNVKSLEK K T P H R I 1 1 0 0 0 0 2 0 1 1 0 0 0 0 2 0 1 0 0 2 0 0 11 0 1246.667 P60866 P60866 9 19 RPS20 40S ribosomal protein S20 yes yes 2;3 1.341E-26 200.54 By MS/MS By MS/MS By MS/MS 8.5 1.07 4 5 5 4 2 8 8 519680000 15834000 204620000 299220000 13603 968 14294 59383;59384;59385;59386;59387;59388;59389;59390;59391;59392;59393;59394;59395;59396;59397;59398;59399;59400 49705;49706;49707;49708;49709;49710;49711;49712;49713;49714;49715;49716;49717;49718;49719;49720;49721 49710 17 11278000 137240000 105060000 TPVEVPVGGFK EELYSELQARETFEKTPVEVPVGGFKGRTV TFEKTPVEVPVGGFKGRTVTVWELISSEYF K T P F K G 0 0 0 0 0 0 1 2 0 0 0 1 0 1 2 0 1 0 0 3 0 0 11 0 1128.6179 Q15149 Q15149 3374 3384 PLEC Plectin yes yes 2 0.0013387 110.88 By MS/MS 1 0 1 1 25890000 0 25890000 0 13604 1348 14295 59401 49722 49722 1 0 12655000 0 TPVMNSEAK NCWAPKVETAITKVRTPVMNSEAKVLVPGI AITKVRTPVMNSEAKVLVPGIPGHHAAIKP R T P A K V 1 0 1 0 0 0 1 0 0 0 0 1 1 0 1 1 1 0 0 1 0 0 9 0 975.46953 Q15061 Q15061 394 402 WDR43 WD repeat-containing protein 43 yes yes 2 0.0033758 100.02 By MS/MS 3 0 1 1 3657200 0 0 3657200 13605 1343 14296 59402 49723 49723 1 0 0 709310 TPVPSDIDISR KPGKWMIQYNNLNLKTPVPSDIDISRSCKP LNLKTPVPSDIDISRSCKPKPIGKLAREIG K T P S R S 0 1 0 2 0 0 0 0 0 2 0 0 0 0 2 2 1 0 0 1 0 0 11 0 1198.6194 P11586 P11586 314 324 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.03506 77.379 By matching By MS/MS 2 0 2 1 1 17806000 11881000 0 5925200 13606 528 14297 59403;59404 49724 49724 1 14315000 0 1339000 TPVQMMYLR KLNGLYPFRVNSAQRTPVQMMYLREKLNIG VNSAQRTPVQMMYLREKLNIGYIEDLKAQI R T P L R E 0 1 0 0 0 1 0 0 0 0 1 0 2 0 1 0 1 0 1 1 0 0 9 0 1137.5675 P05120 P05120 230 238 SERPINB2 Plasminogen activator inhibitor 2 yes yes 2 0.01301 86.833 By MS/MS By matching 2.25 0.829 1 1 2 3 1 14205000 12547000 0 1657100 13607 426 14298 59405;59406;59407;59408 49725 49725 1 14054000 0 321400 TPVSEDMLGR DAKKTSCEFTGDILRTPVSEDMLGRVFNGS GDILRTPVSEDMLGRVFNGSGKPIDRGPVV R T P G R V 0 1 0 1 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 10 0 1103.5281 P21281;P15313 P21281 121 130 ATP6V1B2;ATP6V1B1 V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform yes no 2 0.017332 84.522 By MS/MS 4 0 1 1 7320200 0 0 7320200 13608 621 14299 59409 49726 49726 1 0 0 1195600 TPVTQVNEVTGTLR LQKDVEDFLSPLLGKTPVTQVNEVTGTLRI KTPVTQVNEVTGTLRIKGYFDQELKAWLLE K T P L R I 0 1 1 0 0 1 1 1 0 0 1 0 0 0 1 0 4 0 0 3 0 0 14 0 1513.81 Q13405 Q13405 135 148 MRPL49 39S ribosomal protein L49, mitochondrial yes yes 2 5.884E-34 207.88 By MS/MS By MS/MS 8.4 1.02 1 2 1 1 2 3 33765000 0 14755000 19010000 13609 1243 14300 59410;59411;59412;59413;59414 49727;49728;49729;49730 49729 4 0 7096000 7925100 TPVVQNAASIVQPSPAHVGQQGLSK KLRQSQLQKENVVQKTPVVQNAASIVQPSP VQPSPAHVGQQGLSKLPSRPGAQGVEPQNL K T P S K L 3 0 1 0 0 4 0 2 1 1 1 1 0 0 3 3 1 0 0 4 0 0 25 0 2512.3398 Q8WXI9 Q8WXI9 200 224 GATAD2B Transcriptional repressor p66-beta yes yes 3 6.5516E-06 74.287 By MS/MS 3.5 0.5 1 1 2 10530000 0 10530000 0 13610 1697 14301 59415;59416 49731 49731 1 0 4193600 0 TPWLYEQEGEVEKPFIK PRNKKLPEEEVESSRTPWLYEQEGEVEKPF WLYEQEGEVEKPFIKTGFSVSVEKSTSSNR R T P I K T 0 0 0 0 0 1 4 1 0 1 1 2 0 1 2 0 1 1 1 1 0 0 17 1 2092.0517 Q15154 Q15154 1209 1225 PCM1 Pericentriolar material 1 protein yes yes 3 3.0643E-06 140.8 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 22732000 0 2699400 20033000 13611 1349 14302 59417;59418;59419 49732;49733 49733 2 0 1265800 4316300 TPYTDVNIVTIR LYANVRPCVSIEGYKTPYTDVNIVTIRENT GYKTPYTDVNIVTIRENTEGEYSGIEHVIV K T P I R E 0 1 1 1 0 0 0 0 0 2 0 0 0 0 1 0 3 0 1 2 0 0 12 0 1390.7456 P50213 P50213 135 146 IDH3A Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial yes yes 2 0.00070612 121.61 By MS/MS By MS/MS 6 0 2 1 1 14281000 0 4959900 9321200 13612 876 14303 59420;59421 49734;49735 49735 2 0 1716900 1394500 TQASSSFQDSSQPAGK KGADSELSTVPSVTKTQASSSFQDSSQPAG QASSSFQDSSQPAGKAEGIREPKVTGKLKQ K T Q G K A 2 0 0 1 0 3 0 1 0 0 0 1 0 1 1 5 1 0 0 0 0 0 16 0 1624.7329 P46087 P46087 670 685 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 3.279E-05 131.69 By MS/MS By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 11736000 1963600 4804500 4968200 13613 824 14304 59422;59423;59424;59425 49736;49737;49738 49737 3 2365900 2163500 1046100 TQDPSSPGTTPPQAR SSPGPRPVEGTPASRTQDPSSPGTTPPQAR TQDPSSPGTTPPQARQAPAPTVIRDPPSIT R T Q A R Q 1 1 0 1 0 2 0 1 0 0 0 0 0 0 4 2 3 0 0 0 0 0 15 0 1538.7325 Q13112 Q13112 424 438 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 0.0058175 71.241 By MS/MS 3 0 1 1 0 0 0 0 13614 1221 14305 59426 49739 49739 1 0 0 0 TQEELTPFFK KGSELQTQAKAYFEKTQEELTPFFKKAGTD AYFEKTQEELTPFFKKAGTDLLNFLSSFID K T Q F K K 0 0 0 0 0 1 2 0 0 0 1 1 0 2 1 0 2 0 0 0 0 0 10 0 1238.6183 CON__P81644 CON__P81644 68 77 yes yes 2 0.0021652 106.6 By matching By MS/MS By MS/MS 10 0 3 1 1 1 63158000 7045700 13666000 42447000 + 13615 70 14306 59427;59428;59429 49740;49741 49741 2 12836000 69137000 92835000 TQEELTPFFKK KGSELQTQAKAYFEKTQEELTPFFKKAGTD YFEKTQEELTPFFKKAGTDLLNFLSSFIDP K T Q K K A 0 0 0 0 0 1 2 0 0 0 1 2 0 2 1 0 2 0 0 0 0 0 11 1 1366.7133 CON__P81644 CON__P81644 68 78 yes yes 2;3 0.0096253 87.806 By MS/MS By matching 10 0 3 2 1 26287000 23201000 0 3086000 + 13616 70 14307 59430;59431;59432 49742;49743 49743 2 42267000 0 6749500 TQEQLALEMAELTAR EAKEALLQASRDQKKTQEQLALEMAELTAR TQEQLALEMAELTARISQLEMARQKKESEA K T Q A R I 3 1 0 0 0 2 3 0 0 0 3 0 1 0 0 0 2 0 0 0 0 0 15 0 1702.856 P26038 P26038 413 427 MSN Moesin yes yes 3 0.020406 51.76 By MS/MS 3 0 1 1 1936800 0 0 1936800 13617 664 14308 59433 49744 49744 1 0 0 375640 TQETPSAQMEGFLNR KTALPAQSAATLPARTQETPSAQMEGFLNR TQETPSAQMEGFLNRKHEWEAHNKKASSRS R T Q N R K 1 1 1 0 0 2 2 1 0 0 1 0 1 1 1 1 2 0 0 0 0 0 15 0 1707.7886 Q01082 Q01082 2192 2206 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 4.5189E-12 111.94 By MS/MS 1 0 2 2 12816000 0 12816000 0 13618 1128 14309;14310 59434;59435 49745;49746 49745 543 1 0 6264100 0 TQFLPPNLLALFAPR ______________________________ TQFLPPNLLALFAPRDPIPYLPPLEKLPHE M T Q P R D 2 1 1 0 0 1 0 0 0 0 4 0 0 2 3 0 1 0 0 0 0 0 15 0 1696.9665 P08621 P08621 2 16 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.00027671 106.62 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 1 4 22998000 0 7833700 15164000 13619 474 14311 59436;59437;59438;59439;59440 49747;49748;49749;49750;49751;49752;49753 49747 7 0 2599700 2907800 TQGFLALFSGDTGEIK VHTVSLHEIDVINSRTQGFLALFSGDTGEI QGFLALFSGDTGEIKSEVREQINAKVAEWR R T Q I K S 1 0 0 1 0 1 1 3 0 1 2 1 0 2 0 1 2 0 0 0 0 0 16 0 1682.8516 Q9Y230 Q9Y230 254 269 RUVBL2 RuvB-like 2 yes yes 2 4.414E-05 116.51 By MS/MS By MS/MS By MS/MS 4.25 0.433 3 1 1 2 1 31905000 2176500 5678400 24050000 13620 2228 14312 59441;59442;59443;59444 49754;49755;49756;49757 49754 4 1698000 1696100 3928100 TQIEQTNEER NKEIKNALKEVKQIKTQIEQTNEERKLLLS VKQIKTQIEQTNEERKLLLSSLEEAKKKKE K T Q E R K 0 1 1 0 0 2 3 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 10 0 1246.579 CON__P17697 CON__P17697 52 61 yes yes 2 5.9235E-12 174.02 By MS/MS 6 0 1 1 7650500 0 0 7650500 + 13621 60 14313 59445 49758 49758 1 0 0 1144600 TQIIQDFLR KLCAMVADNPSYNTKTQIIQDFLRKGSAGD PSYNTKTQIIQDFLRKGSAGDGFHGDVYLT K T Q L R K 0 1 0 1 0 2 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 0 9 0 1132.6241 P49916 P49916 283 291 LIG3 DNA ligase 3 yes yes 2 0.0071701 93.162 By MS/MS 2 0 1 1 9877900 0 9877900 0 13622 874 14314 59446 49759 49759 1 0 4448100 0 TQILAASYELHK LNEAWADLLELIDTRTQILAASYELHKFYH DTRTQILAASYELHKFYHDAKEIFGRIQDK R T Q H K F 2 0 0 0 0 1 1 0 1 1 2 1 0 0 0 1 1 0 1 0 0 0 12 0 1372.7351 Q01082 Q01082 1798 1809 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 0.00011622 138.65 By MS/MS By MS/MS 1.33 0.471 4 2 2 4 124750000 0 35466000 89283000 13623 1128 14315 59447;59448;59449;59450;59451;59452 49760;49761;49762;49763 49763 4 0 17335000 19283000 TQIVTEIISEIR LVERLLHIIIDDNKRTQIVTEIISEIRAPI NKRTQIVTEIISEIRAPIVTVGVNNDPADV R T Q I R A 0 1 0 0 0 1 2 0 0 4 0 0 0 0 0 1 2 0 0 1 0 0 12 0 1400.7875 Q9BPX3 Q9BPX3 459 470 NCAPG Condensin complex subunit 3 yes yes 2 1.8623E-05 153.1 By MS/MS 2 0 1 1 10186000 0 0 10186000 13624 1873 14316 59453 49764 49764 1 0 0 2301800 TQLEELEDELQATEDAK EKSKRALEQQVEEMKTQLEELEDELQATED LEELEDELQATEDAKLRLEVNLQAMKAQFE K T Q A K L 2 0 0 2 0 2 5 0 0 0 3 1 0 0 0 0 2 0 0 0 0 0 17 0 1960.9113 P35579;P35580 P35579 1539 1555 MYH9;MYH10 Myosin-9;Myosin-10 no no 2;3 3.2936E-92 253.83 By MS/MS By MS/MS 1.43 0.495 4 3 3 4 110410000 0 47497000 62918000 13625 752;753 14317 59454;59455;59456;59457;59458;59459;59460 49765;49766;49767;49768;49769;49770 49765 6 0 23105000 13690000 TQLEWTEAILEDEQTQR SPEAPPAEQDPVQLKTQLEWTEAILEDEQT LEWTEAILEDEQTQRQKLTAEFEEAQTSAC K T Q Q R Q 1 1 0 1 0 3 4 0 0 1 2 0 0 0 0 0 3 1 0 0 0 0 17 0 2088.9964 Q9P2E9 Q9P2E9 1292 1308 RRBP1 Ribosome-binding protein 1 yes yes 2 1.0269E-05 136.33 By MS/MS 1.5 0.5 1 1 2 6381800 0 0 6381800 13626 2122 14318 59461;59462 49771 49771 1 0 0 1417000 TQLLQDVQDENK LEAMLKERESDLSSKTQLLQDVQDENKLFK SSKTQLLQDVQDENKLFKSQIEQLKQQNYQ K T Q N K L 0 0 1 2 0 3 1 0 0 0 2 1 0 0 0 0 1 0 0 1 0 0 12 0 1429.7049 Q86UP2 Q86UP2 960 971 KTN1 Kinectin yes yes 2 3.2273E-05 150.18 By MS/MS 2 0 1 1 27911000 0 0 27911000 13627 1549 14319 59463 49772 49772 1 0 0 6307300 TQLQLDER GGIEICITFPTEYVKTQLQLDERSHPPRYR FPTEYVKTQLQLDERSHPPRYRGIGDCVRQ K T Q E R S 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 8 0 1001.5142 P53007 P53007 51 58 SLC25A1 Tricarboxylate transport protein, mitochondrial yes yes 2 4.3497E-05 150.88 By MS/MS 6 0 1 1 27631000 0 0 27631000 13628 918 14320 59464 49773 49773 1 0 0 4133800 TQLSLLPR PMLLPQTYGARGKGRTQLSLLPRALQRPSA GARGKGRTQLSLLPRALQRPSAAAPQAENG R T Q P R A 0 1 0 0 0 1 0 0 0 0 3 0 0 0 1 1 1 0 0 0 0 0 8 0 926.55492 Q15020 Q15020 911 918 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 2 0.041319 75.109 By MS/MS By matching 2.5 0.5 1 1 1 1 39301000 0 2896800 36405000 13629 1331 14321 59465;59466 49774 49774 1 0 1304500 7060800 TQLYEYLQNR ILHLCTQVIEISEYRTQLYEYLQNRMMAIA ISEYRTQLYEYLQNRMMAIAPNVTVMVGEL R T Q N R M 0 1 1 0 0 2 1 0 0 0 2 0 0 0 0 0 1 0 2 0 0 0 10 0 1326.6568 Q9Y2X3 Q9Y2X3 269 278 NOP58 Nucleolar protein 58 yes yes 2;3 3.4381E-16 175.12 By MS/MS By MS/MS 4 1 3 3 1 1 2 6 299810000 0 85130000 214680000 13630 2254 14322 59467;59468;59469;59470;59471;59472;59473;59474 49775;49776;49777;49778;49779;49780;49781 49777 7 0 28998000 36171000 TQMAEVLPSPR QVGLPGKGGKAKGKKTQMAEVLPSPRGQRV KGKKTQMAEVLPSPRGQRVIPRITIEMKAE K T Q P R G 1 1 0 0 0 1 1 0 0 0 1 0 1 0 2 1 1 0 0 1 0 0 11 0 1227.6282 P11388 P11388 1205 1215 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.4987E-05 147.41 By MS/MS 1.5 0.5 1 1 2 54634000 0 0 54634000 13631 524 14323 59475;59476 49782;49783;49784 49782 3 0 0 11871000 TQMLDQEELLASTR DEEINQQSQLVEKLKTQMLDQEELLASTRR KTQMLDQEELLASTRRDQDNMQAELNRLQA K T Q T R R 1 1 0 1 0 2 2 0 0 0 3 0 1 0 0 1 2 0 0 0 0 0 14 0 1633.7981 P33176 P33176 451 464 KIF5B Kinesin-1 heavy chain yes yes 2 0.0022946 100.56 By MS/MS 2 0 1 1 3776800 0 0 3776800 13632 730 14324 59477 49785 49785 1 0 0 853480 TQNVLGEK RVTPTRTEIIILATRTQNVLGEKGRRIREL IIILATRTQNVLGEKGRRIRELTAVVQKRF R T Q E K G 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 0 1 0 0 1 0 0 8 0 887.47125 P23396 P23396 55 62 RPS3 40S ribosomal protein S3 yes yes 2 0.0055805 99.136 By MS/MS By MS/MS 6 0 2 1 1 31180000 0 21602000 9578000 13633 641 14325 59478;59479 49786;49787 49787 2 0 7477800 1433000 TQPAVATAATAAEK GGSLESDGCPKEPAKTQPAVATAATAAEKY KTQPAVATAATAAEKYKHRGEGERKDIVSS K T Q E K Y 6 0 0 0 0 1 1 0 0 0 0 1 0 0 1 0 3 0 0 1 0 0 14 0 1328.6936 P51608 P51608 436 449 MECP2 Methyl-CpG-binding protein 2 yes yes 2 0.0019411 103.14 By matching By MS/MS 3.33 0.471 2 1 1 2 45924000 0 7255100 38669000 13634 896 14326 59480;59481;59482 49788;49789 49788 2 0 3092800 7431600 TQPDGTSVPGEPASPISQR CEEGTPLSITSKLPRTQPDGTSVPGEPASP GTSVPGEPASPISQRLPPKVESLESLYFTP R T Q Q R L 1 1 0 1 0 2 1 2 0 1 0 0 0 0 4 3 2 0 0 1 0 0 19 0 1922.9334 Q14980 Q14980 1744 1762 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 1.5141E-09 153.09 By MS/MS By MS/MS 1 0 2 1 1 20410000 0 5643000 14767000 13635 1327 14327 59483;59484 49790;49791 49791 2 0 2758200 3181800 TQPMTAQAASYR AYRAQPSASLGVGYRTQPMTAQAASYRAQP GYRTQPMTAQAASYRAQPSVSLGAPYRGQL R T Q Y R A 3 1 0 0 0 2 0 0 0 0 0 0 1 0 1 1 2 0 1 0 0 0 12 0 1323.6241 Q96PK6 Q96PK6 263 274 RBM14 RNA-binding protein 14 yes yes 2 7.6099E-05 141.91 By matching By MS/MS By MS/MS 3.57 1.5 1 3 1 1 1 1 3 3 108290000 5427600 13796000 89064000 13636 1818 14328 59485;59486;59487;59488;59489;59490;59491 49792;49793;49794;49795;49796 49792 4 6262200 4923900 17297000 TQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAK ISRQPLGATSGASLKTQPSSQPLQSGQVLP TPSAPPTSQQELQAKILSLFNSGTVTANSS K T Q A K I 3 0 0 0 0 7 1 1 0 0 3 1 0 0 7 6 4 0 0 1 0 0 34 0 3485.7638 Q9HCD5 Q9HCD5 401 434 NCOA5 Nuclear receptor coactivator 5 yes yes 3 3.4193E-16 67.899 By MS/MS 3.5 0.5 1 1 2 9170900 0 9170900 0 13637 2010 14329 59492;59493 49797 49797 1 0 3476600 0 TQQAAQANITLQEQIEAIHK EEKVTWDGHSGSMARTQQAAQANITLQEQI QANITLQEQIEAIHKAKGLVPEDDTKEKIG R T Q H K A 4 0 1 0 0 5 2 0 1 3 1 1 0 0 0 0 2 0 0 0 0 0 20 0 2234.1655 Q15459 Q15459 512 531 SF3A1 Splicing factor 3A subunit 1 yes yes 3 1.2013E-07 100.59 By matching By MS/MS 2 0 2 1 1 18003000 3180000 0 14823000 13638 1369 14330 59494;59495 49798 49798 1 3831600 0 3349800 TQQMLHGLQR SGGDQDQEERRWNKRTQQMLHGLQRALAKT RWNKRTQQMLHGLQRALAKTGAESISLLEL R T Q Q R A 0 1 0 0 0 3 0 1 1 0 2 0 1 0 0 0 1 0 0 0 0 0 10 0 1210.6241 O60216 O60216 560 569 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2;3 4.3039E-05 150.36 By matching By MS/MS By MS/MS 2.92 1.32 2 3 3 2 2 1 5 6 81116000 6460000 19240000 55416000 13639 219 14331 59496;59497;59498;59499;59500;59501;59502;59503;59504;59505;59506;59507 49799;49800;49801;49802;49803 49801 5 6460000 8374100 11028000 TQRPADVIFATVR MSKDSLLGDKGQTARTQRPADVIFATVREL ARTQRPADVIFATVRELVSGGRSVRFSEAE R T Q V R E 2 2 0 1 0 1 0 0 0 1 0 0 0 1 1 0 2 0 0 2 0 0 13 1 1472.81 P33993 P33993 654 666 MCM7 DNA replication licensing factor MCM7 yes yes 3 0.0015639 95.345 By MS/MS By MS/MS 6.25 3.27 2 1 1 2 2 16437000 0 15980000 456930 13640 733 14332 59508;59509;59510;59511 49804;49805;49806 49804 3 0 7948100 999340 TQSSASLAASYAAQQHPQAAASYR AYGAQPSATLAAPYRTQSSASLAASYAAQQ SYAAQQHPQAAASYRGQPGNAYDGAGQPSA R T Q Y R G 8 1 0 0 0 4 0 0 1 0 1 0 0 0 1 5 1 0 2 0 0 0 24 0 2464.1731 Q96PK6 Q96PK6 518 541 RBM14 RNA-binding protein 14 yes yes 2;3;4 0 367.28 By MS/MS By MS/MS By MS/MS 3.29 1.58 2 4 1 1 1 5 196670000 14049000 4831600 177790000 13641 1818 14333 59512;59513;59514;59515;59516;59517;59518 49807;49808;49809;49810;49811;49812;49813 49812 7 16209000 2774300 35145000 TQSSLVPALTDFVR KGKIEEDSEVLMMIKTQSSLVPALTDFVRS KTQSSLVPALTDFVRSVHPYEVAEVIALPV K T Q V R S 1 1 0 1 0 1 0 0 0 0 2 0 0 1 1 2 2 0 0 2 0 0 14 0 1532.8199 O60888 O60888 125 138 CUTA Protein CutA yes yes 2 0.00084974 112.13 By MS/MS By MS/MS 8.67 0.471 1 2 2 1 7161100 3788700 0 3372400 13642 240 14334 59519;59520;59521 49814;49815 49815 2 2390600 0 1077300 TQTAIASEDMPNTLTEAEK QFLRDLDDFQSWLSRTQTAIASEDMPNTLT IASEDMPNTLTEAEKLLTQHENIKNEIDNY R T Q E K L 3 0 1 1 0 1 3 0 0 1 1 1 1 0 1 1 4 0 0 0 0 0 19 0 2048.9572 Q01082 Q01082 1081 1099 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 1.2867E-156 283.45 By matching By MS/MS By MS/MS 1.17 0.373 5 1 1 2 3 70731000 831980 31699000 38200000 13643 1128 14335;14336 59522;59523;59524;59525;59526;59527 49816;49817;49818;49819 49818 544 4 831980 15494000 8264300 TQTAVASEEGPATLPEAEALLAQHAALR DFLRSLDDFQAWLGRTQTAVASEEGPATLP LPEAEALLAQHAALRGEVERAQSEYSRLRA R T Q L R G 8 1 0 0 0 2 4 1 1 0 4 0 0 0 2 1 3 0 0 1 0 0 28 0 2844.4618 O15020 O15020 1084 1111 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 3 8.3543E-27 114.83 By MS/MS 1 0 1 1 5304200 0 5304200 0 13644 160 14337 59528 49820 49820 1 0 2592600 0 TQTILFYGR FNANHPFLFFIRHNKTQTILFYGRVCSP__ FIRHNKTQTILFYGRVCSP___________ K T Q G R V 0 1 0 0 0 1 0 1 0 1 1 0 0 1 0 0 2 0 1 0 0 0 9 0 1097.5869 Q96P63 Q96P63 393 401 SERPINB12 Serpin B12 yes yes 2 0.00044759 123.45 By MS/MS By matching 3.33 2.75 2 1 1 1 1 3 3 79055000 53321000 0 25734000 13645 1816 14338 59529;59530;59531;59532;59533;59534 49821;49822;49823 49823 3 43049000 0 4621000 TQTPPVSPAPQPTEER QEEARRKLEEQARAKTQTPPVSPAPQPTEE QTPPVSPAPQPTEERLPSSPVYEDAASFKA K T Q E R L 1 1 0 0 0 2 2 0 0 0 0 0 0 0 5 1 3 0 0 1 0 0 16 0 1733.8584 Q14247 Q14247 399 414 CTTN Src substrate cortactin yes yes 2 0.0094466 73.466 By MS/MS By MS/MS 3 0 2 1 1 6123700 0 1742200 4381600 13646 1295 14339 59535;59536 49824;49825 49824 2 0 742680 849810 TQTSDPAMLPTMIGLLAEAGVR PEVPLRRDLPLLLFRTQTSDPAMLPTMIGL MLPTMIGLLAEAGVRLLSYQTSLVSDGETW R T Q V R L 3 1 0 1 0 1 1 2 0 1 3 0 2 0 2 1 3 0 0 1 0 0 22 0 2271.1603 O43175 O43175 470 491 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2;3 2.1047E-21 161.84 By MS/MS By MS/MS 3.71 0.452 2 5 3 4 35324000 0 13645000 21679000 13647 190 14340;14341 59537;59538;59539;59540;59541;59542;59543 49826;49827;49828;49829;49830;49831 49827 81 6 0 4528400 3633200 TQVAGGQLSFK MASEDIAKLAETLAKTQVAGGQLSFKGKSL TLAKTQVAGGQLSFKGKSLKLNTAEDAKDV K T Q F K G 1 0 0 0 0 2 0 2 0 0 1 1 0 1 0 1 1 0 0 1 0 0 11 0 1134.6033 P46060 P46060 16 26 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.05557 72.478 By matching By MS/MS 3 0 2 1 1 11209000 1716200 0 9493200 13648 822 14342 59544;59545 49832 49832 1 1980100 0 1841200 TQVDTQAQQLR RELQQRLGPYAEELRTQVDTQAQQLRRQLT EELRTQVDTQAQQLRRQLTPYVERMEKVMR R T Q L R R 1 1 0 1 0 4 0 0 0 0 1 0 0 0 0 0 2 0 0 1 0 0 11 0 1286.6579 CON__Q32PJ2 CON__Q32PJ2 144 154 yes yes 2 7.0421E-47 223.88 By MS/MS By MS/MS 7.22 1.87 2 2 2 1 2 5 4 101980000 66983000 0 34995000 + 13649 81 14343 59546;59547;59548;59549;59550;59551;59552;59553;59554 49833;49834;49835;49836;49837;49838;49839 49839 7 95070000 0 15933000 TQVEASEESALNHLQNPGDAAEGR RSKLWEMDNMLIQIKTQVEASEESALNHLQ ALNHLQNPGDAAEGRAAKRCEKAEEKAKEI K T Q G R A 4 1 2 1 0 2 4 2 1 0 2 0 0 0 1 2 1 0 0 1 0 0 24 0 2522.1633 Q9Y605 Q9Y605 69 92 MRFAP1 MORF4 family-associated protein 1 yes yes 3 7.5655E-11 97.974 By MS/MS 8.5 0.5 1 1 2 8810300 0 0 8810300 13650 2305 14344 59555;59556 49840 49840 1 0 0 1952100 TQVELVADPETR GRGPLTQVTDRKCSRTQVELVADPETRTVA CSRTQVELVADPETRTVAVKQLGVNPSTTG R T Q T R T 1 1 0 1 0 1 2 0 0 0 1 0 0 0 1 0 2 0 0 2 0 0 12 0 1356.6885 Q96T60 Q96T60 49 60 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2 0.00011006 139.15 By matching By MS/MS 3.33 0.471 2 1 1 2 34289000 2333800 0 31955000 13651 1840 14345 59557;59558;59559 49841 49841 1 2692700 0 5616900 TQVVAGTNYYIK KTNETYGKLEAVQYKTQVVAGTNYYIKVRA QYKTQVVAGTNYYIKVRAGDNKYMHLKVFK K T Q I K V 1 0 1 0 0 1 0 1 0 1 0 1 0 0 0 0 2 0 2 2 0 0 12 0 1355.7085 P01040 P01040 45 56 CSTA Cystatin-A;Cystatin-A, N-terminally processed yes yes 2 6.3147E-08 166.34 By MS/MS By MS/MS By MS/MS 6.16 2.76 2 1 1 1 1 3 3 3 2 2 10 3 6 1435300000 1301700000 14179000 119470000 13652 374 14346 59560;59561;59562;59563;59564;59565;59566;59567;59568;59569;59570;59571;59572;59573;59574;59575;59576;59577;59578 49842;49843;49844;49845;49846;49847;49848;49849;49850;49851;49852;49853;49854;49855;49856;49857;49858;49859;49860 49844 17 1596400000 6784200 92117000 TQYEEIAQR NNRCLDLGSIIAEVRTQYEEIAQRSKSEAE IIAEVRTQYEEIAQRSKSEAEALYQTKLGE R T Q Q R S 1 1 0 0 0 2 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1136.5462 CON__Q01546 CON__Q01546 359 367 yes yes 2 6.6122E-11 164.72 By MS/MS By matching 1 0 2 1 1 14586000 12582000 0 2003700 + 13653 71 14347 59579;59580 49861 49861 1 12582000 0 431740 TRDELDQFLDK VGYDLDGRRIYKPLRTRDELDQFLDKMDDP KPLRTRDELDQFLDKMDDPDYWRTVQDPMT R T R D K M 0 1 0 3 0 1 1 0 0 0 2 1 0 1 0 0 1 0 0 0 0 0 11 1 1378.6729 Q14137 Q14137 165 175 BOP1 Ribosome biogenesis protein BOP1 yes yes 3 0.0066145 79.283 By MS/MS 2.5 0.5 1 1 2 6565400 0 0 6565400 13654 1283 14348 59581;59582 49862 49862 1 0 0 1412900 TRLELEENQMK KKLKYYTGNYDQYVKTRLELEENQMKRFHW QYVKTRLELEENQMKRFHWEQDQIAHMKNY K T R M K R 0 1 1 0 0 1 3 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 11 1 1389.6922 Q9UG63 Q9UG63 316 326 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.0088792 112.83 By MS/MS 3 0 1 1 5199600 0 0 5199600 13655 2142 14349 59583 49863 49863 1 0 0 1008500 TRLEQEIATYR MEQQNQEYKILLDVKTRLEQEIATYRRLLE LDVKTRLEQEIATYRRLLEGEDAHLSSSQF K T R Y R R 1 2 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 11 1 1378.7205 CON__P02533;P02533;CON__A2A4G1;CON__Q61782;CON__Q9D312;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;Q04695;CON__Q04695;CON__Q6IFX2;CON__P08730-1 CON__P02533 406 416 KRT14;KRT16;KRT13;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13;Keratin, type I cytoskeletal 17 no no 2;3 2.62E-170 293.88 By MS/MS By MS/MS By MS/MS 4.89 2.87 7 5 4 5 5 5 3 4 2 4 17 8 19 3200300000 1334200000 150550000 1715500000 + 13656 35;73;53;91;57;548;52 14350 59584;59585;59586;59587;59588;59589;59590;59591;59592;59593;59594;59595;59596;59597;59598;59599;59600;59601;59602;59603;59604;59605;59606;59607;59608;59609;59610;59611;59612;59613;59614;59615;59616;59617;59618;59619;59620;59621;59622;59623;59624;59625;59626;59627 49864;49865;49866;49867;49868;49869;49870;49871;49872;49873;49874;49875;49876;49877;49878;49879;49880;49881;49882;49883;49884;49885;49886;49887;49888;49889;49890;49891;49892;49893;49894;49895;49896;49897;49898;49899;49900;49901;49902;49903;49904;49905 49889 42 1173900000 50443000 327540000 TRLEQEIATYRR MEQQNQEYKILLDVKTRLEQEIATYRRLLE DVKTRLEQEIATYRRLLEGEDAHLSSSQFS K T R R R L 1 3 0 0 0 1 2 0 0 1 1 0 0 0 0 0 2 0 1 0 0 0 12 2 1534.8216 CON__P02533;P02533;CON__Q61782;CON__Q9D312;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;Q04695;CON__Q04695;CON__Q6IFX2 CON__P02533 406 417 KRT14;KRT16;KRT17 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17 no no 3 0.0010816 106.58 By MS/MS By matching 4.86 2.59 1 1 2 1 1 1 5 2 48342000 41170000 7172400 0 + 13657 35;73;53;91 14351 59628;59629;59630;59631;59632;59633;59634 49906;49907;49908 49908 3 34539000 1967600 0 TSALENYINR ______________________________ ______________________________ M T S N R T 1 1 2 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1179.5884 O95777 O95777 2 11 LSM8 U6 snRNA-associated Sm-like protein LSm8 yes yes 2 8.8107E-30 197.3 By MS/MS By MS/MS 9.5 0.5 2 2 2 2 36571000 0 9946000 26625000 13658 338 14352 59635;59636;59637;59638 49909;49910;49911;49912 49911 4 0 48278000 10141000 TSALTQGLER ______________________________ ______________________________ M T S E R I 1 1 0 0 0 1 1 1 0 0 2 0 0 0 0 1 2 0 0 0 0 0 10 0 1074.5669 Q0VGL1 Q0VGL1 2 11 LAMTOR4 Ragulator complex protein LAMTOR4;Ragulator complex protein LAMTOR4, N-terminally processed yes yes 2 0.00013467 140.11 By MS/MS By MS/MS 10 0 2 1 1 14038000 0 9645500 4392600 13659 1191 14353 59639;59640 49913;49914 49913 2 0 48798000 9607000 TSAQVVLDGLVDK LHIVALIAQKGNFSKTSAQVVLDGLVDKIG SKTSAQVVLDGLVDKIGDVKCGNNAKEAMT K T S D K I 1 0 0 2 0 1 0 1 0 0 2 1 0 0 0 1 1 0 0 3 0 0 13 0 1343.7296 Q14008 Q14008 677 689 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00041125 124.39 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 85377000 0 20262000 65116000 13660 1279 14354 59641;59642;59643;59644;59645 49915;49916;49917;49918 49916 4 0 9696100 14149000 TSAQVVLDGLVDKIGDVK LHIVALIAQKGNFSKTSAQVVLDGLVDKIG QVVLDGLVDKIGDVKCGNNAKEAMTAIAEA K T S V K C 1 0 0 3 0 1 0 2 0 1 2 2 0 0 0 1 1 0 0 4 0 0 18 1 1856.0255 Q14008 Q14008 677 694 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 8.656E-05 96.447 By MS/MS 1.5 0.5 1 1 2 6385700 0 0 6385700 13661 1279 14355 59646;59647 49919 49919 1 0 0 1393300 TSASIILR ICDDELILIKNTKARTSASIILRGANDFMC IKNTKARTSASIILRGANDFMCDEMERSLH R T S L R G 1 1 0 0 0 0 0 0 0 2 1 0 0 0 0 2 1 0 0 0 0 0 8 0 859.51272 P17987 P17987 371 378 TCP1 T-complex protein 1 subunit alpha yes yes 2 0.0013851 116.54 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 18689000 0 9821800 8866800 13662 591 14356 59648;59649;59650;59651 49920;49921;49922 49922 3 0 3292200 1552000 TSDLIVLGLPWK TDASSAVKVKRAVQKTSDLIVLGLPWKTTE VQKTSDLIVLGLPWKTTEQDLKEYFSTFGE K T S W K T 0 0 0 1 0 0 0 1 0 1 3 1 0 0 1 1 1 1 0 1 0 0 12 0 1340.7704 Q13148 Q13148 103 114 TARDBP TAR DNA-binding protein 43 yes yes 2 8.7112E-06 158.76 By MS/MS By MS/MS By MS/MS 4.36 1.72 1 1 1 2 3 2 1 1 3 7 66913000 3228000 22131000 41554000 13663 1224 14357 59652;59653;59654;59655;59656;59657;59658;59659;59660;59661;59662 49923;49924;49925;49926;49927;49928;49929 49923 7 2586100 6389600 6508800 TSDQIHFFFAK KQLMEVFKFDTISEKTSDQIHFFFAKLNCR ISEKTSDQIHFFFAKLNCRLYRKANKSSEL K T S A K L 1 0 0 1 0 1 0 0 1 1 0 1 0 3 0 1 1 0 0 0 0 0 11 0 1339.6561 CON__P41361;P01008 CON__P41361 148 158 SERPINC1 Antithrombin-III no no 2;3 2.6322E-06 115.06 By MS/MS 3 0 2 2 15224000 0 0 15224000 + 13664 67;366 14358 59663;59664 49930;49931 49931 2 0 0 2952600 TSEDVPQINPSTSLPLIGSPPVTSSQVMLSK PSTSKVNSVTPKKPKTSEDVPQINPSTSLP IGSPPVTSSQVMLSKGTNTSSPYDAGADYL K T S S K G 0 0 1 1 0 2 1 1 0 2 3 1 1 0 5 7 3 0 0 3 0 0 31 0 3208.6537 Q8ND82 Q8ND82 191 221 ZNF280C Zinc finger protein 280C yes yes 3 0.021199 23.983 By MS/MS 3 0 1 1 1465300 0 1465300 0 13665 1634 14359 59665 49932 49932 1 0 624660 0 TSESGELHGLTTEEEFVEGIYK RKAADDTWEPFASGKTSESGELHGLTTEEE HGLTTEEEFVEGIYKVEIDTKSYWKALGIS K T S Y K V 0 0 0 0 0 0 6 3 1 1 2 1 0 1 0 2 3 0 1 1 0 0 22 0 2454.1438 P02766;Q5U7I5 P02766 69 90 TTR Transthyretin no no 3 6.9823E-22 160.13 By MS/MS 9 0 1 1 8727800 8727800 0 0 13666 396;1459 14360 59666 49933 49933 1 4899000 0 0 TSESVLSVEHGQPVESVLLFPSGGLLVSAGGR ITGSYDHTVKMFDARTSESVLSVEHGQPVE LLFPSGGLLVSAGGRYVKVWDMLKGGQLLV R T S G R Y 1 1 0 0 0 1 3 5 1 0 5 0 0 1 2 6 1 0 0 5 0 0 32 0 3207.6776 Q8TED0 Q8TED0 196 227 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 3 1.6921E-33 113.65 By MS/MS By MS/MS 4 0 2 1 1 13072000 0 3071300 10000000 13667 1665 14361 59667;59668 49934;49935 49935 2 0 1019300 1633400 TSEVIEDEKQFYSK ______________________________ MTSEVIEDEKQFYSKAKTYWKQIPPTVDGM M T S S K A 0 0 0 1 0 1 3 0 0 1 0 2 0 1 0 2 1 0 1 1 0 0 14 1 1701.8097 Q9BV86 Q9BV86 2 15 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed yes yes 2 0.0017705 69.721 By MS/MS 7 0 1 1 5899800 0 0 5899800 13668 1912 14362 59669 49936 49936 0 0 0 1046900 TSEVPYAGINIGPVHK ASTLGSLEALLEFLKTSEVPYAGINIGPVH SEVPYAGINIGPVHKKDVMKASVMLEHDPQ K T S H K K 1 0 1 0 0 0 1 2 1 2 0 1 0 0 2 1 1 0 1 2 0 0 16 0 1680.8835 O60841 O60841 1000 1015 EIF5B Eukaryotic translation initiation factor 5B yes yes 2;3 3.3664E-05 146.11 By matching By matching By MS/MS 1.33 0.471 4 2 1 1 4 141230000 7074400 1578800 132580000 13669 236 14363 59670;59671;59672;59673;59674;59675 49937;49938;49939;49940 49940 4 7074400 771680 29262000 TSFFLGEVGNAAK GLYEDCSSCFQAMGKTSFFLGEVGNAAKMM GKTSFFLGEVGNAAKMMLIVNMVQGSFMAT K T S A K M 2 0 1 0 0 0 1 2 0 0 1 1 0 2 0 1 1 0 0 1 0 0 13 0 1339.6772 Q49A26 Q49A26 423 435 GLYR1 Putative oxidoreductase GLYR1 yes yes 2 0.00022476 147.73 By MS/MS By MS/MS 3.43 1.76 1 1 2 2 1 2 5 54288000 0 15880000 38408000 13670 1417 14364 59676;59677;59678;59679;59680;59681;59682 49941;49942;49943;49944 49943 4 0 5384600 7240100 TSFFLVR LIRLDVDTKLNEQLKTSFFLVREDTKAAVL TKLNEQLKTSFFLVREDTKAAVLLHLLHNV K T S V R E 0 1 0 0 0 0 0 0 0 0 1 0 0 2 0 1 1 0 0 1 0 0 7 0 868.48069 Q8TDD1 Q8TDD1 313 319 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 0.014914 111.69 By matching By MS/MS By MS/MS 2 0 3 1 1 1 4812300 714390 0 4097900 13671 1661 14365 59683;59684;59685 49945;49946 49946 2 860760 0 926050 TSFFQALGITTK EVTVPAQNTGLGPEKTSFFQALGITTKISR PEKTSFFQALGITTKISRGTIEILSDVQLI K T S T K I 1 0 0 0 0 1 0 1 0 1 1 1 0 2 0 1 3 0 0 0 0 0 12 0 1312.7027 P05388;Q8NHW5 P05388 135 146 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like yes no 2 1.6222E-05 154.24 By MS/MS By MS/MS By MS/MS 5.44 1.26 1 1 2 3 2 1 5 3 780430000 16023000 338380000 426030000 13672 432 14366 59686;59687;59688;59689;59690;59691;59692;59693;59694 49947;49948;49949;49950;49951;49952;49953;49954;49955;49956 49950 10 21335000 117310000 63720000 TSFTPVGDVFELNFMNVK EHAKSVASRATVLQKTSFTPVGDVFELNFM TPVGDVFELNFMNVKFSSGYYDFLVEVEGD K T S V K F 0 0 2 1 0 0 1 1 0 0 1 1 1 3 1 1 2 0 0 3 0 0 18 0 2043.9976 P04844 P04844 323 340 RPN2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 yes yes 2 0.00013518 98.902 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 9461700 0 2413900 7047800 13673 420 14367 59695;59696;59697 49957;49958 49957 2 0 801080 1206400 TSFTSVSR RSFSTASAITPSVSRTSFTSVSRSGGGGGG ITPSVSRTSFTSVSRSGGGGGGGFGRVSLA R T S S R S 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 3 2 0 0 1 0 0 8 0 883.43995 CON__P13647;P13647 CON__P13647 30 37 KRT5 Keratin, type II cytoskeletal 5 no no 2 1.893E-06 161.68 By MS/MS By matching 6.17 3.02 1 1 1 1 1 1 1 1 2 2 11 1 224940000 217120000 0 7815000 + 13674 58 14368 59698;59699;59700;59701;59702;59703;59704;59705;59706;59707;59708;59709 49959;49960;49961;49962;49963;49964;49965;49966 49963 8 255100000 0 17092000 TSGSVYITLK EQFLTELTRLFQKCRTSGSVYITLKKYDGR FQKCRTSGSVYITLKKYDGRTKPIPKKGTV R T S L K K 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 2 2 0 1 1 0 0 10 0 1067.5863 P37108 P37108 22 31 SRP14 Signal recognition particle 14 kDa protein yes yes 2 0.0035874 101.65 By MS/MS By MS/MS 8 0 2 1 1 95261000 0 86288000 8973600 13675 766 14369 59710;59711 49967;49968 49967 2 0 39258000 1375700 TSGVPSGFNFTAPPVLGK NKASSTSLTSTQPTKTSGVPSGFNFTAPPV VPSGFNFTAPPVLGKHTEPPVTSSATTTSV K T S G K H 1 0 1 0 0 0 0 3 0 0 1 1 0 2 3 2 2 0 0 2 0 0 18 0 1774.9254 P35658 P35658 1365 1382 NUP214 Nuclear pore complex protein Nup214 yes yes 2 0.006016 68.171 By MS/MS 1 0 1 1 4164500 0 0 4164500 13676 757 14370 59712 49969 49969 1 0 0 897310 TSIAIDTIINQK RGQRELIIGDRQTGKTSIAIDTIINQKRFN TGKTSIAIDTIINQKRFNDGSDEKKKLYCI K T S Q K R 1 0 1 1 0 1 0 0 0 4 0 1 0 0 0 1 2 0 0 0 0 0 12 0 1315.7347 P25705 P25705 219 230 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.00013315 137.28 By MS/MS 4 0 1 1 16813000 0 16813000 0 13677 661 14371 59713 49970 49970 1 0 5579500 0 TSIIEAQYLR IDYSQMDELALLSLRTSIIEAQYLRYHDIE LLSLRTSIIEAQYLRYHDIEPGAVVKGTVL R T S L R Y 1 1 0 0 0 1 1 0 0 2 1 0 0 0 0 1 1 0 1 0 0 0 10 0 1192.6452 Q14690 Q14690 437 446 PDCD11 Protein RRP5 homolog yes yes 2 4.9194E-05 149.94 By MS/MS 1 0 1 1 12668000 0 12668000 0 13678 1314 14372 59714 49971 49971 1 0 6191700 0 TSILAAANPISGHYDR ISITKAGVKATLNARTSILAAANPISGHYD SILAAANPISGHYDRSKSLKQNINLSAPIM R T S D R S 3 1 1 1 0 0 0 1 1 2 1 0 0 0 1 2 1 0 1 0 0 0 16 0 1684.8533 Q14566 Q14566 497 512 MCM6 DNA replication licensing factor MCM6 yes yes 2 0.0082961 75.088 By MS/MS 2 0 1 1 3112900 0 0 3112900 13679 1305 14373 59715 49972 49972 1 0 0 703470 TSILAVSDVSSSKPSIK NKGVGQANKPDETSKTSILAVSDVSSSKPS ILAVSDVSSSKPSIKAVIVSSPKAKATVSK K T S I K A 1 0 0 1 0 0 0 0 0 2 1 2 0 0 1 6 1 0 0 2 0 0 17 1 1717.9462 Q14966 Q14966 1379 1395 ZNF638 Zinc finger protein 638 yes yes 3 0.020698 46.663 By MS/MS 1 0 1 1 11144000 0 0 11144000 13680 1324 14374 59716 49973 49973 1 0 0 2401100 TSISIPKPGQDGEIVITGQHR GKRGDTRKKIEMETKTSISIPKPGQDGEIV KPGQDGEIVITGQHRNGVISARTRIDVLLD K T S H R N 0 1 0 1 0 2 1 3 1 4 0 1 0 0 2 2 2 0 0 1 0 0 21 1 2232.1862 Q8N9N2 Q8N9N2 118 138 ASCC1 Activating signal cointegrator 1 complex subunit 1 yes yes 4 0.0049662 47.808 By MS/MS 5 0 1 1 4826300 0 4826300 0 13681 1617 14375 59717 49974 49974 1 0 1244100 0 TSLALDESLFR KGFAYIEFSDKESVRTSLALDESLFRGRQI ESVRTSLALDESLFRGRQIKVIPKRTNRPG R T S F R G 1 1 0 1 0 0 1 0 0 0 3 0 0 1 0 2 1 0 0 0 0 0 11 0 1250.6507 Q86U42 Q86U42 228 238 PABPN1 Polyadenylate-binding protein 2 yes yes 2 1.7724E-107 263.55 By MS/MS By MS/MS 4.33 1.6 1 1 1 2 1 2 4 72817000 0 30650000 42167000 13682 1544 14376 59718;59719;59720;59721;59722;59723 49975;49976;49977 49975 3 0 9053200 6210000 TSLAQQLQR ______________________________ ______________________________ M T S Q R L 1 1 0 0 0 3 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 9 0 1043.5724 Q9H583 Q9H583 2 10 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 4.1491E-09 163.77 By MS/MS 1.5 0.5 1 1 2 14392000 0 14392000 0 13683 1984 14377 59724;59725 49978 49978 1 0 6955900 0 TSLGNVVLLLK YQHELEETTVPEIQRTSLGNVVLLLKSLGI EIQRTSLGNVVLLLKSLGIHDLMHFDFLDP R T S L K S 0 0 1 0 0 0 0 1 0 0 4 1 0 0 0 1 1 0 0 2 0 0 11 0 1155.7227 O60231 O60231 758 768 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 2 0.0093684 92.439 By MS/MS By MS/MS 2 0 2 1 1 7676700 0 2029600 5647100 13684 221 14378 59726;59727 49979;49980 49980 2 0 913970 1276100 TSLPWQGLK DDMESLGYVLMYFNRTSLPWQGLKAATKKQ LMYFNRTSLPWQGLKAATKKQKYEKISEKK R T S L K A 0 0 0 0 0 1 0 1 0 0 2 1 0 0 1 1 1 1 0 0 0 0 9 0 1028.5655 P48729 P48729 217 225 CSNK1A1 Casein kinase I isoform alpha yes yes 2 0.050572 71.342 By MS/MS 6 0 1 1 8770800 0 8770800 0 13685 847 14379 59728 49981 49981 1 0 3036100 0 TSLVQLLAHLTGHTLK MSWMVILVGPASVGKTSLVQLLAHLTGHTL SLVQLLAHLTGHTLKIMAMNSAMDTTELLG K T S L K I 1 0 0 0 0 1 0 1 2 0 5 1 0 0 0 1 3 0 0 1 0 0 16 0 1731.0043 Q9NU22 Q9NU22 2073 2088 MDN1 Midasin yes yes 3 0.0044559 63.062 By MS/MS 1 0 1 1 2778300 0 0 2778300 13686 2056 14380 59729 49982 49982 1 0 0 598630 TSMASLFSFTSPAVK ______________________________ TSMASLFSFTSPAVKRLLGWKQGDEEEKWA M T S V K R 2 0 0 0 0 0 0 0 0 0 1 1 1 2 1 4 2 0 0 1 0 0 15 0 1572.7858 Q99717 Q99717 2 16 SMAD5 Mothers against decapentaplegic homolog 5 yes yes 2 0.016873 63.944 By MS/MS 7.5 0.5 1 1 2 982440 0 982440 0 13687 1860 14381 59730;59731 49983 49983 1 0 527590 0 TSNEVQYDQR RDISEVIALGVPNPRTSNEVQYDQRLFNQS VPNPRTSNEVQYDQRLFNQSKGMDSGFAGG R T S Q R L 0 1 1 1 0 2 1 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 10 0 1238.5527 Q13573 Q13573 401 410 SNW1 SNW domain-containing protein 1 yes yes 2 8.9325E-17 182.65 By MS/MS By MS/MS 3 0 2 1 1 12260000 0 4197200 8062700 13688 1259 14382 59732;59733 49984;49985 49985 2 0 1789300 1563800 TSNLLLSHAGILK VKHLHDNWILHRDLKTSNLLLSHAGILKVG LKTSNLLLSHAGILKVGDFGLAREYGSPLK K T S L K V 1 0 1 0 0 0 0 1 1 1 4 1 0 0 0 2 1 0 0 0 0 0 13 0 1365.798 P21127;Q9UQ88 P21127 565 577 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A yes no 2 0.00029743 130.16 By MS/MS 2 0.816 1 1 1 3 30939000 0 0 30939000 13689 620 14383 59734;59735;59736 49986;49987 49986 2 0 0 6739200 TSPEMDIQNPDDGAR AERIEINRNEKKPMKTSPEMDIQNPDDGAR TSPEMDIQNPDDGARKPIPRDKVTENKRCL K T S A R K 1 1 1 3 0 1 1 1 0 1 0 0 1 0 2 1 1 0 0 0 0 0 15 0 1644.705 P46013 P46013 3127 3141 MKI67 Antigen KI-67 yes yes 2 0.00047647 140.39 By MS/MS 3.33 2.62 1 1 1 3 12078000 0 0 12078000 13690 821 14384 59737;59738;59739 49988;49989;49990 49990 2 0 0 2506300 TSPVTASDPAGPSYAAATLQASSAASSASPVSR NSLRPGALFFSRINKTSPVTASDPAGPSYA LQASSAASSASPVSRAIGSTSKPQESPKGK K T S S R A 9 1 0 1 0 1 0 1 0 0 1 0 0 0 4 9 3 0 1 2 0 0 33 0 3062.4793 P18887 P18887 198 230 XRCC1 DNA repair protein XRCC1 yes yes 3 2.0038E-49 136.27 By MS/MS 3 0 1 1 6022900 0 6022900 0 13691 603 14385 59740 49991 49991 1 0 2567600 0 TSQDFLFSQLQYLPFSNK CACSDTSGPTMRYLRTSQDFLFSQLQYLPF DFLFSQLQYLPFSNKEYEISMLNQMSWLMK R T S N K E 0 0 1 1 0 3 0 0 0 0 3 1 0 3 1 3 1 0 1 0 0 0 18 0 2162.0684 Q92621 Q92621 1086 1103 NUP205 Nuclear pore complex protein Nup205 yes yes 2 1.4482E-16 179.83 By MS/MS 1 0 1 1 9635000 0 0 9635000 13692 1714 14386 59741 49992 49992 1 0 0 2076000 TSQLNVGTSTDVSLK GSPFTAKITGDDSMRTSQLNVGTSTDVSLK TSQLNVGTSTDVSLKITESDLSQLTASIRA R T S L K I 0 0 1 1 0 1 0 1 0 0 2 1 0 0 0 3 3 0 0 2 0 0 15 0 1548.7995 Q14315 Q14315 1954 1968 FLNC Filamin-C yes yes 2 6.4277E-25 197.31 By MS/MS By matching 1.67 0.471 1 2 2 1 12743000 0 8802600 3940200 13693 1298 14387 59742;59743;59744 49993;49994 49993 2 0 4302600 890410 TSQNSELNNMQDLVEDYK IDSLKRYLDGLTAERTSQNSELNNMQDLVE NSELNNMQDLVEDYKKKYEDEINKRTAAEN R T S Y K K 0 0 3 2 0 2 2 0 0 0 2 1 1 0 0 2 1 0 1 1 0 0 18 0 2126.9426 CON__P35908;CON__P35908v2;P35908 CON__P35908 254 271 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 1.9568E-291 337.22 By MS/MS By MS/MS By MS/MS 5.27 3.03 6 2 2 4 4 3 3 1 5 3 21 1 11 547490000 438410000 1452400 107620000 + 13694 65;66 14388;14389 59745;59746;59747;59748;59749;59750;59751;59752;59753;59754;59755;59756;59757;59758;59759;59760;59761;59762;59763;59764;59765;59766;59767;59768;59769;59770;59771;59772;59773;59774;59775;59776;59777 49995;49996;49997;49998;49999;50000;50001;50002;50003;50004;50005;50006;50007;50008;50009;50010;50011;50012;50013;50014;50015;50016;50017;50018;50019;50020 50000 52 25 366050000 709900 22161000 TSQNSELNNMQDLVEDYKK IDSLKRYLDGLTAERTSQNSELNNMQDLVE SELNNMQDLVEDYKKKYEDEINKRTAAEND R T S K K K 0 0 3 2 0 2 2 0 0 0 2 2 1 0 0 2 1 0 1 1 0 0 19 1 2255.0376 CON__P35908;CON__P35908v2;P35908 CON__P35908 254 272 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 0 399.27 By MS/MS By MS/MS By MS/MS 5.31 2.94 7 5 6 5 5 6 6 3 5 6 23 9 22 3949400000 1897000000 139610000 1912800000 + 13695 65;66 14390;14391 59778;59779;59780;59781;59782;59783;59784;59785;59786;59787;59788;59789;59790;59791;59792;59793;59794;59795;59796;59797;59798;59799;59800;59801;59802;59803;59804;59805;59806;59807;59808;59809;59810;59811;59812;59813;59814;59815;59816;59817;59818;59819;59820;59821;59822;59823;59824;59825;59826;59827;59828;59829;59830;59831 50021;50022;50023;50024;50025;50026;50027;50028;50029;50030;50031;50032;50033;50034;50035;50036;50037;50038;50039;50040;50041;50042;50043;50044;50045;50046;50047;50048;50049;50050;50051;50052;50053;50054;50055;50056;50057;50058;50059;50060;50061;50062;50063;50064;50065;50066;50067;50068;50069;50070;50071;50072;50073;50074;50075;50076;50077 50042 52 57 2074600000 64036000 423710000 TSQNSELNNMQDLVEDYKKK IDSLKRYLDGLTAERTSQNSELNNMQDLVE ELNNMQDLVEDYKKKYEDEINKRTAAENDF R T S K K Y 0 0 3 2 0 2 2 0 0 0 2 3 1 0 0 2 1 0 1 1 0 0 20 2 2383.1326 CON__P35908;CON__P35908v2;P35908 CON__P35908 254 273 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 3;4 6.3679E-14 132.13 By MS/MS 7.8 3.43 1 2 2 5 34528000 34528000 0 0 + 13696 65;66 14392 59832;59833;59834;59835;59836 50078;50079;50080;50081 50080 4 27416000 0 0 TSQTSLTASINK FQDSEFSSSQGEDEKTSQTSLTASINKLES DEKTSQTSLTASINKLESTARPSESSEEFL K T S N K L 1 0 1 0 0 1 0 0 0 1 1 1 0 0 0 3 3 0 0 0 0 0 12 0 1249.6514 Q9Y6X4 Q9Y6X4 357 368 FAM169A Soluble lamin-associated protein of 75 kDa yes yes 2 0.058138 70.977 By MS/MS 2 0 1 1 3203400 0 0 3203400 13697 2319 14393 59837 50082 50082 1 0 0 723900 TSREEIFSQNR QAQMKELWREVEETRTSREEIFSQNRESEK EETRTSREEIFSQNRESEKRLKGLEAEVLR R T S N R E 0 2 1 0 0 1 2 0 0 1 0 0 0 1 0 2 1 0 0 0 0 0 11 1 1365.6637 Q7Z406 Q7Z406 1683 1693 MYH14 Myosin-14 yes yes 3 0.016564 68.515 By MS/MS 1 0 1 1 4467000 0 4467000 0 13698 1531 14394 59838 50083 50083 1 0 2183400 0 TSSAETPTIPLGSAVEAIK HQLWLSVEALKYSMKTSSAETPTIPLGSAV ETPTIPLGSAVEAIKANCSDNEFTQALTAA K T S I K A 3 0 0 0 0 0 2 1 0 2 1 1 0 0 2 3 3 0 0 1 0 0 19 0 1870.9888 Q16891 Q16891 582 600 IMMT MICOS complex subunit MIC60 yes yes 2 0.00062982 82.925 By MS/MS 2.5 0.5 1 1 2 20227000 0 0 20227000 13699 1403 14395 59839;59840 50084;50085 50085 2 0 0 4063800 TSSAQVEGGVHSLHSYEK VRAMMYSGELKFEKRTSSAQVEGGVHSLHS AQVEGGVHSLHSYEKRLF____________ R T S E K R 1 0 0 0 0 1 2 2 2 0 1 1 0 0 0 4 1 0 1 2 0 0 18 0 1914.9072 P12268 P12268 494 511 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 3 2.8299E-09 127.32 By MS/MS 4 0 1 1 9242700 0 9242700 0 13700 535 14396 59841 50086 50086 1 0 3067300 0 TSSLAPVVGTTTTTPSPSAIK GSPDTKPSRLASKTKTSSLAPVVGTTTTTP VVGTTTTTPSPSAIKAAAKSAALQVTKQIT K T S I K A 2 0 0 0 0 0 0 1 0 1 1 1 0 0 3 4 6 0 0 2 0 0 21 0 2015.0787 Q92733 Q92733 226 246 PRCC Proline-rich protein PRCC yes yes 2 3.0674E-07 100.54 By MS/MS 4 0 1 1 2150800 0 2150800 0 13701 1717 14397 59842 50087 50087 1 0 713770 0 TSSLDPNDQVAMGR DDFYHQLLRELIERKTSSLDPNDQVAMGRQ KTSSLDPNDQVAMGRQWLAIQKLRSKIHKK K T S G R Q 1 1 1 2 0 1 0 1 0 0 1 0 1 0 1 2 1 0 0 1 0 0 14 0 1489.6831 Q9NY61 Q9NY61 476 489 AATF Protein AATF yes yes 2 0.00057263 118.28 By MS/MS 3 0 1 1 8969500 0 0 8969500 13702 2094 14398 59843 50088 50088 1 0 0 1739700 TSSLPNHSEPDHDTDAGLER VLSEIKRLGDHLAEKTSSLPNHSEPDHDTD NHSEPDHDTDAGLERTNPEYENEVEASMDM K T S E R T 1 1 1 3 0 0 2 1 2 0 2 0 0 0 2 3 2 0 0 0 0 0 20 0 2176.9621 Q69YN4 Q69YN4 577 596 KIAA1429 Protein virilizer homolog yes yes 4 0.002082 56.327 By MS/MS 1 0 1 1 9264000 0 0 9264000 13703 1468 14399 59844 50089 50089 1 0 0 1996100 TSSSFAAAMAR KGKVMASMFYEVSTRTSSSFAAAMARLGGA VSTRTSSSFAAAMARLGGAVLSFSEATSSV R T S A R L 4 1 0 0 0 0 0 0 0 0 0 0 1 1 0 3 1 0 0 0 0 0 11 0 1098.5128 P27708 P27708 1976 1986 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.02047 83.948 By MS/MS 1 0 1 1 7243500 0 7243500 0 13704 681 14400 59845 50090 50090 1 0 3540500 0 TSTLESVAFPDWFIASSK EPVKPFLFYRAKTGRTSTLESVAFPDWFIA LESVAFPDWFIASSKRDQPIILTSELGKSY R T S S K R 2 0 0 1 0 0 1 0 0 1 1 1 0 2 1 4 2 1 0 1 0 0 18 0 1984.9782 Q9NZH8 Q9NZH8 127 144 IL36G Interleukin-36 gamma yes yes 2 0.037548 53.754 By MS/MS 9 0 1 1 1311300 1311300 0 0 13705 2102 14401 59846 50091 50091 1 736060 0 0 TSVLAAANPIESQWNPK LSIAKAGIICQLNARTSVLAAANPIESQWN VLAAANPIESQWNPKKTTIENIQLPHTLLS R T S P K K 3 0 2 0 0 1 1 0 0 1 1 1 0 0 2 2 1 1 0 1 0 0 17 0 1824.937 P33991 P33991 611 627 MCM4 DNA replication licensing factor MCM4 yes yes 2 1.5875E-06 156.36 By matching By MS/MS By MS/MS 2 0.707 1 2 1 1 1 2 24058000 2534400 4488200 17035000 13706 731 14402 59847;59848;59849;59850 50092;50093 50092 2 2534400 2021100 3716400 TSVQFQNFSPTVVHPGDLQTQLAVQTK FRQNLGRMYLFYGNKTSVQFQNFSPTVVHP VHPGDLQTQLAVQTKRVAAQVDGGAQVQQV K T S T K R 1 0 1 1 0 5 0 1 1 0 2 1 0 2 2 2 4 0 0 4 0 0 27 0 2969.5247 O95782 O95782 784 810 AP2A1 AP-2 complex subunit alpha-1 yes yes 3 1.6713E-15 98.565 By MS/MS 2 0 1 1 8335000 0 8335000 0 13707 339 14403 59851 50094 50094 1 0 3753400 0 TSVSLAVSR SLITTLAQKNPEEFKTSVSLAVSRLSRIVT NPEEFKTSVSLAVSRLSRIVTSASTDLQDY K T S S R L 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 3 1 0 0 2 0 0 9 0 918.51345 O94973 O94973 224 232 AP2A2 AP-2 complex subunit alpha-2 yes yes 2 0.028532 85.666 By MS/MS 2 0 1 1 0 0 0 0 13708 306 14404 59852 50095 50095 1 0 0 0 TSVSMNTDNLMR WLVSIKIAFDKKAQKTSVSMNTDNLMRIFT AQKTSVSMNTDNLMRIFTMGIDLTKPFEYL K T S M R I 0 1 2 1 0 0 0 0 0 0 1 0 2 0 0 2 2 0 0 1 0 0 12 0 1367.6173 Q9H9Y6 Q9H9Y6 407 418 POLR1B DNA-directed RNA polymerase I subunit RPA2 yes yes 2 4.3578E-05 147.75 By MS/MS By MS/MS 2 0 2 1 1 8591300 0 4070300 4521000 13709 2000 14405 59853;59854 50096;50097 50096 2 0 1832900 1021600 TSVTDFLR KAEGYAEGDLTLYHRTSVTDFLRAANPVDF DLTLYHRTSVTDFLRAANPVDFLSKASEIM R T S L R A 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 8 0 937.4869 Q8IY81 Q8IY81 252 259 FTSJ3 pre-rRNA processing protein FTSJ3 yes yes 2 6.5176E-10 173.93 By MS/MS By MS/MS 2 0 2 1 1 22274000 0 12802000 9471800 13710 1590 14406 59855;59856 50098;50099 50099 2 0 5765000 2140400 TSYAQHQQVR FCVGFTKKRNNQIRKTSYAQHQQVRQIRKK NQIRKTSYAQHQQVRQIRKKMMEIMTREVQ K T S V R Q 1 1 0 0 0 3 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 0 10 0 1216.5949 P61247 P61247 153 162 RPS3A 40S ribosomal protein S3a yes yes 3 0.010131 71.451 By MS/MS 6 0.816 1 1 1 3 8778000 0 8778000 0 13711 988 14407 59857;59858;59859 50100;50101 50100 2 0 3100300 0 TSYEEFTHK FNMCGFECRILPKCRTSYEEFTHKDGVWNL ILPKCRTSYEEFTHKDGVWNLQNEVTKERT R T S H K D 0 0 0 0 0 0 2 0 1 0 0 1 0 1 0 1 2 0 1 0 0 0 9 0 1140.5088 Q6P2Q9 Q6P2Q9 1202 1210 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00056558 128.69 By MS/MS By MS/MS 1 0 2 1 1 29700000 0 14404000 15296000 13712 1490 14408 59860;59861 50102;50103 50103 2 0 7040400 3295800 TSYMAQLMK EHERILDMCCAPGGKTSYMAQLMKNTGVIL CAPGGKTSYMAQLMKNTGVILANDANAERL K T S M K N 1 0 0 0 0 1 0 0 0 0 1 1 2 0 0 1 1 0 1 0 0 0 9 0 1071.5093 P46087 P46087 399 407 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 2 0.013069 86.794 By MS/MS 2 0.816 1 1 1 3 31307000 0 0 31307000 13713 824 14409 59862;59863;59864 50104 50104 1 0 0 6743400 TTAARPTFEPAR ______________________________ ______________________________ M T T A R G 3 2 0 0 0 0 1 0 0 0 0 0 0 1 2 0 3 0 0 0 0 0 12 1 1316.6837 Q9P013 Q9P013 2 13 CWC15 Spliceosome-associated protein CWC15 homolog yes yes 2 0.014749 76.302 By MS/MS By matching 6 0 2 1 1 29164000 0 17594000 11570000 13714 2109 14410 59865;59866 50105 50105 1 0 6090400 1731000 TTAEDGVPAPPLLDPIVQQFGQFSK REPPGSTAGLPQEPKTTAEDGVPAPPLLDP PLLDPIVQQFGQFSKDKALEEEEDDRPYDP K T T S K D 2 0 0 2 0 3 1 2 0 1 2 1 0 2 4 1 2 0 0 2 0 0 25 0 2654.3592 Q9BTC0 Q9BTC0 1348 1372 DIDO1 Death-inducer obliterator 1 yes yes 3 0.0094623 34.715 By MS/MS 1 0 1 1 1757000 0 1757000 0 13715 1900 14411 59867 50106 50106 1 0 858800 0 TTAENEFVMLK VEDFKNKYEDEINKRTTAENEFVMLKKDVD INKRTTAENEFVMLKKDVDAAYMNKVELEA R T T L K K 1 0 1 0 0 0 2 0 0 0 1 1 1 1 0 0 2 0 0 1 0 0 11 0 1281.6275 CON__P13647;P13647 CON__P13647 266 276 KRT5 Keratin, type II cytoskeletal 5 no no 2 4.0498E-08 163.32 By MS/MS By MS/MS By MS/MS 5.5 3.13 4 2 3 3 3 2 2 2 2 5 14 3 11 579660000 407070000 10889000 161710000 + 13716 58 14412;14413 59868;59869;59870;59871;59872;59873;59874;59875;59876;59877;59878;59879;59880;59881;59882;59883;59884;59885;59886;59887;59888;59889;59890;59891;59892;59893;59894;59895 50107;50108;50109;50110;50111;50112;50113;50114;50115;50116;50117;50118;50119;50120;50121;50122;50123;50124;50125;50126;50127;50128;50129;50130;50131;50132 50115 47 26 382700000 4600600 82589000 TTAENEFVMLKK VEDFKNKYEDEINKRTTAENEFVMLKKDVD NKRTTAENEFVMLKKDVDAAYMNKVELEAK R T T K K D 1 0 1 0 0 0 2 0 0 0 1 2 1 1 0 0 2 0 0 1 0 0 12 1 1409.7225 CON__P13647;P13647 CON__P13647 266 277 KRT5 Keratin, type II cytoskeletal 5 no no 2;3 2.3167E-17 185.29 By MS/MS By matching By matching 5.89 2.86 2 2 3 3 3 3 2 3 3 4 25 2 1 393420000 388940000 3151100 1332500 + 13717 58 14414;14415 59896;59897;59898;59899;59900;59901;59902;59903;59904;59905;59906;59907;59908;59909;59910;59911;59912;59913;59914;59915;59916;59917;59918;59919;59920;59921;59922;59923 50133;50134;50135;50136;50137;50138;50139;50140;50141;50142;50143;50144;50145;50146;50147 50143 47 14 388530000 8192400 2914200 TTASSELSEKPAESVTSK KSAEKISTQRHEVIRTTASSELSEKPAESV SSELSEKPAESVTSKKTGPLSAQPSVEKEN R T T S K K 2 0 0 0 0 0 3 0 0 0 1 2 0 0 1 5 3 0 0 1 0 0 18 1 1850.9109 Q71F23 Q71F23 167 184 CENPU Centromere protein U yes yes 3 7.7848E-15 98.062 By MS/MS 4 0 1 1 0 0 0 0 13718 1513 14416 59924 50148 50148 1 0 0 0 TTDGYLLR VKKWQTMIEAHVDVKTTDGYLLRLFCVGFT EAHVDVKTTDGYLLRLFCVGFTKKRNNQIR K T T L R L 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 8 0 937.4869 P61247 P61247 129 136 RPS3A 40S ribosomal protein S3a yes yes 2 8.2102E-06 154.09 By MS/MS By MS/MS 4.2 1.94 1 1 1 2 3 2 185170000 0 74277000 110890000 13719 988 14417 59925;59926;59927;59928;59929 50149;50150;50151 50151 3 0 25976000 16525000 TTDLLTDWEK LQMKIVQEDRAVESRTTDLLTDWEKTKPVT AVESRTTDLLTDWEKTKPVTGNLRPEEALQ R T T E K T 0 0 0 2 0 0 1 0 0 0 2 1 0 0 0 0 3 1 0 0 0 0 10 0 1220.5925 Q14204 Q14204 1254 1263 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.0085417 90.263 By MS/MS 1 0 1 1 4564700 0 4564700 0 13720 1292 14418 59930 50152 50152 1 0 2231200 0 TTDMAPSKETEMALAK ERPPAQALEIMMGLKTTDMAPSKETEMALA TDMAPSKETEMALAKDMALATKTEVALAKD K T T A K D 3 0 0 1 0 0 2 0 0 0 1 2 2 0 1 1 3 0 0 0 0 0 16 1 1722.8168 P27816 P27816 247 262 MAP4 Microtubule-associated protein 4 yes yes 3 0.0040872 65.943 By MS/MS 1.5 0.5 1 1 2 26091000 0 0 26091000 13721 683 14419 59931;59932 50153 50153 1 0 0 5680300 TTDTASVQNEAK PTANKKCDLISIPKKTTDTASVQNEAKLDE PKKTTDTASVQNEAKLDEILKEIKSIKDTI K T T A K L 2 0 1 1 0 1 1 0 0 0 0 1 0 0 0 1 3 0 0 1 0 0 12 0 1263.5943 Q9ULV4 Q9ULV4 429 440 CORO1C Coronin-1C yes yes 2 1.426E-05 155.42 By MS/MS 5 0 1 1 2955100 0 2955100 0 13722 2192 14420 59933 50154 50154 1 0 761740 0 TTEMETIYDLGTK PATGTGSKVGKLTLKTTEMETIYDLGTKMI LKTTEMETIYDLGTKMIESLTKDKVQAGDV K T T T K M 0 0 0 1 0 0 2 1 0 1 1 1 1 0 0 0 4 0 1 0 0 0 13 0 1500.7018 Q9Y230 Q9Y230 165 177 RUVBL2 RuvB-like 2 yes yes 2 0.00039487 125.22 By MS/MS 4.5 0.5 1 1 2 30905000 0 0 30905000 13723 2228 14421 59934;59935 50155;50156 50156 2 0 0 4790100 TTEPGVTGLLLAVEGPAAK SEKLQVGQGVSLTLKTTEPGVTGLLLAVEG GVTGLLLAVEGPAAKRTMRPTQKDSETVDE K T T A K R 3 0 0 0 0 0 2 3 0 0 3 1 0 0 2 0 3 0 0 2 0 0 19 0 1823.004 Q14690 Q14690 982 1000 PDCD11 Protein RRP5 homolog yes yes 2;3 7.9481E-06 105.14 By MS/MS By MS/MS 1.43 0.495 4 3 3 4 35383000 0 12235000 23148000 13724 1314 14422 59936;59937;59938;59939;59940;59941;59942 50157;50158;50159;50160;50161;50162;50163 50162 7 0 5872200 5068200 TTESHMDWEK CMKNNLPSNDSSKFKTTESHMDWEKVAFKD SSKFKTTESHMDWEKVAFKDFSGDMCKLKW K T T E K V 0 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 2 1 0 0 0 0 10 0 1262.5238 P17480 P17480 48 57 UBTF Nucleolar transcription factor 1 yes yes 2;3 6.7246E-05 148.69 By matching By MS/MS 3 1.1 2 2 1 2 3 40920000 0 8020700 32900000 13725 584 14423 59943;59944;59945;59946;59947 50164;50165;50166 50165 3 0 3611800 6215900 TTETQVLVASAQK SIVEQRLEALEEKIRTTETQVLVASAQKKL IRTTETQVLVASAQKKLLEERLKLVSELWD R T T Q K K 2 0 0 0 0 2 1 0 0 0 1 1 0 0 0 1 3 0 0 2 0 0 13 0 1374.7355 P12081 P12081 406 418 HARS Histidine--tRNA ligase, cytoplasmic yes yes 2 3.1405E-05 160.36 By MS/MS 4 0 1 1 6909900 0 6909900 0 13726 532 14424 59948 50167 50167 1 0 2293100 0 TTEVGSVSEVKK ______________________________ ______________________________ M T T K K D 0 0 0 0 0 0 2 1 0 0 0 2 0 0 0 2 2 0 0 3 0 0 12 1 1262.6718 O43491 O43491 2 13 EPB41L2 Band 4.1-like protein 2 yes yes 2 0.0067255 87.568 By MS/MS By matching 2.5 0.5 1 1 1 1 7226000 0 4389300 2836700 13727 199 14425 59949;59950 50168 50168 1 0 1976600 550180 TTFQENTQSISVR SLSIAGVGLDSSNLKTTFQENTQSISVRGI LKTTFQENTQSISVRGIKFIPGPPGNKDLC K T T V R G 0 1 1 0 0 2 1 0 0 1 0 0 0 1 0 2 3 0 0 1 0 0 13 0 1509.7423 A6NHR9 A6NHR9 1208 1220 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 1.7332E-57 228.98 By MS/MS By MS/MS 1 0 2 1 1 58332000 0 16875000 41458000 13728 15 14426 59951;59952 50169;50170 50169 2 0 8248200 8932700 TTGAFWQTWK ARAIYSFCSQICDPRTTGAFWQTWKDFEVR ICDPRTTGAFWQTWKDFEVRHGNEDTIKEM R T T W K D 1 0 0 0 0 1 0 1 0 0 0 1 0 1 0 0 3 2 0 0 0 0 10 0 1224.5928 Q9HCS7 Q9HCS7 699 708 XAB2 Pre-mRNA-splicing factor SYF1 yes yes 2 9.6166E-05 146.69 By MS/MS 2.5 0.5 1 1 2 6798900 0 6798900 0 13729 2014 14427 59953;59954 50171 50171 1 0 2999500 0 TTGEVVSGVVSK EAALVYVENAHVAGKTTGEVVSGVVSKVFN AGKTTGEVVSGVVSKVFNQPKAKAKELGIE K T T S K V 0 0 0 0 0 0 1 2 0 0 0 1 0 0 0 2 2 0 0 4 0 0 12 0 1161.6241 Q14008 Q14008 85 96 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 9.0031E-05 140.78 By matching By MS/MS By MS/MS 1.8 1.17 3 1 1 1 2 2 112210000 2739900 22251000 87220000 13730 1279 14428 59955;59956;59957;59958;59959 50172;50173;50174 50172 3 2739900 10491000 18880000 TTGFGMIYDSLDYAK VIFVFGFRTHFGGGKTTGFGMIYDSLDYAK TTGFGMIYDSLDYAKKNEPKHRLARHGLYE K T T A K K 1 0 0 2 0 0 0 2 0 1 1 1 1 1 0 1 2 0 2 0 0 0 15 0 1680.7705 P62847 P62847 69 83 RPS24 40S ribosomal protein S24 yes yes 2 0.00028234 130.56 By MS/MS By MS/MS 8 1.21 1 3 4 1 2 5 6 378100000 0 47324000 330780000 13731 1038 14429;14430 59960;59961;59962;59963;59964;59965;59966;59967;59968;59969;59970 50175;50176;50177;50178;50179;50180;50181;50182;50183 50176 499 9 0 23455000 57899000 TTGIVMDSGDGVTHTVPIYEGYALPHAILR YVAIQAVLSLYASGRTTGIVMDSGDGVTHT VPIYEGYALPHAILRLDLAGRDLTDYLMKI R T T L R L 2 1 0 2 0 0 1 4 2 3 2 0 1 0 2 1 4 0 2 3 0 0 30 0 3182.607 P60709;P63261 P60709 148 177 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3;4;5 0 438.28 By MS/MS By MS/MS By MS/MS 5.06 1.84 1 6 9 12 21 14 6 5 4 3 33 42 9330500000 38749000 4767500000 4524300000 13732 966;1069 14431;14432 59971;59972;59973;59974;59975;59976;59977;59978;59979;59980;59981;59982;59983;59984;59985;59986;59987;59988;59989;59990;59991;59992;59993;59994;59995;59996;59997;59998;59999;60000;60001;60002;60003;60004;60005;60006;60007;60008;60009;60010;60011;60012;60013;60014;60015;60016;60017;60018;60019;60020;60021;60022;60023;60024;60025;60026;60027;60028;60029;60030;60031;60032;60033;60034;60035;60036;60037;60038;60039;60040;60041;60042;60043;60044;60045;60046;60047;60048 50184;50185;50186;50187;50188;50189;50190;50191;50192;50193;50194;50195;50196;50197;50198;50199;50200;50201;50202;50203;50204;50205;50206;50207;50208;50209;50210;50211;50212;50213;50214;50215;50216;50217;50218;50219;50220;50221;50222;50223;50224;50225;50226;50227;50228;50229;50230;50231;50232;50233;50234;50235;50236;50237;50238;50239;50240;50241;50242;50243;50244;50245;50246;50247;50248;50249;50250;50251;50252;50253;50254;50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265;50266;50267;50268;50269;50270;50271;50272;50273;50274;50275 50232 467 92 29176000 1330200000 677420000 TTGMGAIYGMAQTTVDR IRESVTQIMKNPKAKTTGMGAIYGMAQTTV GMGAIYGMAQTTVDRNMVAELSSVFLDSLY K T T D R N 2 1 0 1 0 1 0 3 0 1 0 0 2 0 0 0 4 0 1 1 0 0 17 0 1771.8233 O95470 O95470 519 535 SGPL1 Sphingosine-1-phosphate lyase 1 yes yes 2 1.4573E-05 142.57 By MS/MS 3.5 0.5 1 1 2 12404000 0 0 12404000 13733 328 14433 60049;60050 50276 50276 1 0 0 2103600 TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR FISMQAVLSLYATGRTTGVVLDSGDGVTHA VPIYEGFAMPHSIMRIDIAGRDVSRFLRLY R T T M R I 2 1 0 2 0 0 1 4 2 2 1 0 2 1 2 2 3 0 1 4 0 0 30 0 3156.5372 P61163;P42025 P61163 153 182 ACTR1A;ACTR1B Alpha-centractin;Beta-centractin yes no 4 0.0041841 33.289 By MS/MS 5 0 1 1 3584800 0 3584800 0 13734 982 14434 60051 50277 50277 1 0 924040 0 TTHFVEGGDAGNR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED KKTTHFVEGGDAGNREDQINRLIRRMN___ K T T N R E 1 1 1 1 0 0 1 3 1 0 0 0 0 1 0 0 2 0 0 1 0 0 13 0 1359.6167 P18124 P18124 224 236 RPL7 60S ribosomal protein L7 yes yes 2;3 0.00046804 121.5 By MS/MS By MS/MS 5.8 0.4 1 4 3 2 28296000 0 11836000 16459000 13735 594 14435 60052;60053;60054;60055;60056 50278;50279 50279 2 0 4039900 2462500 TTHFVEGGDAGNREDQINR WPFKLSSPRGGMKKKTTHFVEGGDAGNRED VEGGDAGNREDQINRLIRRMN_________ K T T N R L 1 2 2 2 0 1 2 3 1 1 0 0 0 1 0 0 2 0 0 1 0 0 19 1 2114.973 P18124 P18124 224 242 RPL7 60S ribosomal protein L7 yes yes 2;3;4 6.6315E-65 237.65 By MS/MS By MS/MS 4.63 1.9 2 2 1 2 3 7 2 6 13 1169600000 0 217790000 951850000 13736 594 14436 60057;60058;60059;60060;60061;60062;60063;60064;60065;60066;60067;60068;60069;60070;60071;60072;60073;60074;60075 50280;50281;50282;50283;50284;50285;50286;50287;50288;50289;50290;50291;50292;50293;50294;50295;50296 50295 17 0 75581000 145510000 TTHLAGALSPGEAWPFESV PVSDWGEEVELNSPRTTHLAGALSPGEAWP AGALSPGEAWPFESV_______________ R T T S V - 3 0 0 0 0 0 2 2 1 0 2 0 0 1 2 2 2 1 0 1 0 0 19 0 1968.9581 Q9Y3X0 Q9Y3X0 513 531 CCDC9 Coiled-coil domain-containing protein 9 yes yes 2 1.086E-08 143 By MS/MS By MS/MS 3 0 2 1 1 11308000 7365000 3943200 0 13737 2279 14437 60076;60077 50297;50298 50297 2 8497600 1681000 0 TTIEKPVWLGFLGPIIK YKKALYLQYTDETFRTTIEKPVWLGFLGPI IEKPVWLGFLGPIIKAETGDKVYVHLKNLA R T T I K A 0 0 0 0 0 0 1 2 0 3 2 2 0 1 2 0 2 1 0 1 0 0 17 1 1911.1234 P00450 P00450 82 98 CP Ceruloplasmin yes yes 3 0.026814 44.567 By MS/MS 9 0 1 1 761810 761810 0 0 13738 360 14438 60078 50299 50299 1 427610 0 0 TTIHEMFLSTLDPK SSTSLLKMAPSAEERTTIHEMFLSTLDPKT RTTIHEMFLSTLDPKTISFRSRVLPSNAVW R T T P K T 0 0 0 1 0 0 1 0 1 1 2 1 1 1 1 1 3 0 0 0 0 0 14 0 1631.8229 Q9Y305 Q9Y305 259 272 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2;3 0.00079149 113.42 By MS/MS By MS/MS 5.43 0.495 4 3 3 4 60551000 0 17295000 43256000 13739 2256 14439;14440 60079;60080;60081;60082;60083;60084;60085 50300;50301;50302;50303 50301 4 0 4637400 6140400 TTIHQLTMQKEEDTSGYR ISLKNQFETEINITKTTIHQLTMQKEEDTS HQLTMQKEEDTSGYRAQIDNLTRENRSLSE K T T Y R A 0 1 0 1 0 2 2 1 1 1 1 1 1 0 0 1 4 0 1 0 0 0 18 1 2137.011 P15924 P15924 1375 1392 DSP Desmoplakin yes yes 3;4 6.5106E-10 154.49 By MS/MS By MS/MS 1 0 3 1 2 23277000 0 4546700 18730000 13740 572 14441 60086;60087;60088 50304;50305;50306 50305 3 0 2222400 4035700 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR NSQGEEVAQRSTVFKTTIPEEEEEEEEAAG VVVEEELFHQQGTPRASNRSCAIM______ K T T P R A 2 1 0 0 0 2 11 2 1 1 1 0 0 1 2 0 3 0 0 3 0 0 30 0 3410.5638 P20700 P20700 548 577 LMNB1 Lamin-B1 yes yes 3;4 7.8562E-48 132.78 By MS/MS By MS/MS 3 1.2 1 1 3 1 1 1 6 193490000 0 811360 192680000 13741 619 14442 60089;60090;60091;60092;60093;60094;60095 50307;50308;50309;50310;50311;50312;50313 50308 7 0 345880 38543000 TTISVAHLLAAR LAKVYQPKRSVLSPKTTISVAHLLAARQDL SPKTTISVAHLLAARQDLSKILRTSSGSIR K T T A R Q 3 1 0 0 0 0 0 0 1 1 2 0 0 0 0 1 2 0 0 1 0 0 12 0 1251.7299 Q8NCA5 Q8NCA5 261 272 FAM98A Protein FAM98A yes yes 2 0.021821 75.294 By MS/MS 4 0 1 1 0 0 0 0 13742 1632 14443 60096 50314 50314 1 0 0 0 TTITMAHLLAAR IARIYQPKRYALSPKTTITMAHLLAAREDL SPKTTITMAHLLAAREDLSKIIRTSSGTSR K T T A R E 3 1 0 0 0 0 0 0 1 1 2 0 1 0 0 0 3 0 0 0 0 0 12 0 1297.7176 Q52LJ0 Q52LJ0 264 275 FAM98B Protein FAM98B yes yes 3 0.050506 45.257 By MS/MS 4.5 0.5 1 1 2 10249000 0 0 10249000 13743 1421 14444 60097;60098 50315 50315 1 0 0 1470000 TTLILPTQQVR SPSEASQHSMQSPQKTTLILPTQQVRRSSR SPQKTTLILPTQQVRRSSRIKPPGPTAVPK K T T V R R 0 1 0 0 0 2 0 0 0 1 2 0 0 0 1 0 3 0 0 1 0 0 11 0 1268.7452 Q9UQR0 Q9UQR0 271 281 SCML2 Sex comb on midleg-like protein 2 yes yes 2 0.0003277 125.82 By matching By MS/MS By MS/MS 3.67 2.21 1 2 2 2 1 1 2 3 4 56067000 3044800 23941000 29081000 13744 2224 14445 60099;60100;60101;60102;60103;60104;60105;60106;60107 50316;50317;50318;50319 50316 4 3325600 10607000 5561500 TTLQVDTLNAELAAER EEQSNMELLNDRFRKTTLQVDTLNAELAAE TLQVDTLNAELAAERSAAQKSDNARQQLER K T T E R S 3 1 1 1 0 1 2 0 0 0 3 0 0 0 0 0 3 0 0 1 0 0 16 0 1743.9003 P35580 P35580 1762 1777 MYH10 Myosin-10 yes yes 2;3 1.6034E-46 218.5 By MS/MS By MS/MS 1.25 0.433 3 1 3 1 56952000 0 39351000 17601000 13745 753 14446 60108;60109;60110;60111 50320;50321;50322;50323 50320 4 0 19124000 3792500 TTLVIMER IVKNSAKDCYPAVQKTTLVIMERLQQVLQM CYPAVQKTTLVIMERLQQVLQMESHIQSTS K T T E R L 0 1 0 0 0 0 1 0 0 1 1 0 1 0 0 0 2 0 0 1 0 0 8 0 961.52665 Q14974 Q14974 550 557 KPNB1 Importin subunit beta-1 yes yes 2 0.0010186 121.62 By MS/MS 3 0.816 1 1 1 3 14817000 0 0 14817000 13746 1325 14447 60112;60113;60114 50324;50325 50325 2 0 0 2997700 TTNAGPLHPYWPQHLR ______________________________ TNAGPLHPYWPQHLRLDNFVPNDRPTWHIL M T T L R L 1 1 1 0 0 1 0 1 2 0 2 0 0 0 3 0 2 1 1 0 0 0 16 0 1886.954 Q15125 Q15125 2 17 EBP 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase yes yes 3 0.0040236 62.377 By MS/MS 7 0 1 1 3288800 0 3288800 0 13747 1347 14448 60115 50326 50326 1 0 1888400 0 TTNFAGILSQGLR FKQLHNRRLLWHGSRTTNFAGILSQGLRIA SRTTNFAGILSQGLRIAPPEAPVTGYMFGK R T T L R I 1 1 1 0 0 1 0 2 0 1 2 0 0 1 0 1 2 0 0 0 0 0 13 0 1376.7412 P09874 P09874 866 878 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 4.9034E-148 290.51 By MS/MS By MS/MS By MS/MS 3.45 1.92 4 5 3 3 3 2 2 2 9 11 1087400000 44985000 370150000 672310000 13748 492 14449 60116;60117;60118;60119;60120;60121;60122;60123;60124;60125;60126;60127;60128;60129;60130;60131;60132;60133;60134;60135;60136;60137 50327;50328;50329;50330;50331;50332;50333;50334;50335;50336;50337;50338;50339;50340;50341;50342;50343;50344;50345;50346;50347 50340 21 53782000 162130000 141950000 TTNNIPLLQQILLTLQHLPLTVDHLK VGGYKLLNNWLTYSKTTNNIPLLQQILLTL LLTLQHLPLTVDHLKQNNTAKLVKQLSKSS K T T L K Q 0 0 2 1 0 3 0 0 2 2 8 1 0 0 2 0 4 0 0 1 0 0 26 0 2975.7172 Q96QC0 Q96QC0 84 109 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 4 0.00011219 55.994 By MS/MS 2 0 1 1 6616500 0 0 6616500 13749 1823 14450 60138 50348 50348 1 0 0 1495200 TTNVLGAVNKPLSSAGK LPPEMKSFFTPGKPKTTNVLGAVNKPLSSA NVLGAVNKPLSSAGKQSQTKSSRMETVSNA K T T G K Q 2 0 2 0 0 0 0 2 0 0 2 2 0 0 1 2 2 0 0 2 0 0 17 1 1655.9206 Q9NTI5 Q9NTI5 1127 1143 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 7.8193E-14 184.96 By MS/MS By MS/MS 1.83 0.687 2 3 1 2 4 252790000 0 18105000 234680000 13750 2053 14451 60139;60140;60141;60142;60143;60144 50349;50350;50351;50352;50353 50351 5 0 8152900 50794000 TTPDVIFVFGFR VPKTEIREKLAKMYKTTPDVIFVFGFRTHF MYKTTPDVIFVFGFRTHFGGGKTTGFGMIY K T T F R T 0 1 0 1 0 0 0 1 0 1 0 0 0 3 1 0 2 0 0 2 0 0 12 0 1397.7343 P62847 P62847 50 61 RPS24 40S ribosomal protein S24 yes yes 2 0.00022448 131.41 By MS/MS By MS/MS By MS/MS 8.25 0.433 3 1 1 1 2 103350000 2131000 2060600 99158000 13751 1038 14452 60145;60146;60147;60148 50354;50355;50356;50357;50358 50357 5 1829500 937510 15202000 TTPPMLDSDGSFFLYSK SVEWESNGQPENNYKTTPPMLDSDGSFFLY PPMLDSDGSFFLYSKLTVDKSRWQQGNVFS K T T S K L 0 0 0 2 0 0 0 1 0 0 2 1 1 2 2 3 2 0 1 0 0 0 17 0 1904.8866 P01859 P01859 272 288 IGHG2 Ig gamma-2 chain C region yes yes 2 0.00082487 94.728 By MS/MS 6.5 3.04 1 1 1 1 4 39691000 39691000 0 0 13752 382 14453 60149;60150;60151;60152 50359;50360 50359 2 29159000 0 0 TTPPVLDSDGSFFLYSK AVEWESNGQPENNYKTTPPVLDSDGSFFLY PPVLDSDGSFFLYSKLTVDKSRWQQGNVFS K T T S K L 0 0 0 2 0 0 0 1 0 0 2 1 0 2 2 3 2 0 1 1 0 0 17 0 1872.9145 P0DOX5;P01857 P0DOX5 395 411 IGHG1 Ig gamma-1 chain C region yes no 2 3.8278E-05 105.14 By MS/MS 5.29 3.37 1 1 1 1 1 1 1 7 190110000 190110000 0 0 13753 381 14454 60153;60154;60155;60156;60157;60158;60159 50361;50362;50363;50364;50365;50366 50363 6 138190000 0 0 TTPPVLDSDGSFFLYSR AVEWESNGQPENNYKTTPPVLDSDGSFFLY PPVLDSDGSFFLYSRLTVDKSRWQEGNVFS K T T S R L 0 1 0 2 0 0 0 1 0 0 2 0 0 2 2 3 2 0 1 1 0 0 17 0 1900.9207 P01861 P01861 273 289 IGHG4 Ig gamma-4 chain C region yes yes 2 9.1001E-06 119.25 By MS/MS 9 0 1 1 10671000 10671000 0 0 13754 384 14455 60160 50367 50367 1 5989500 0 0 TTPSATSLPQTVVMTSPVTLTSQTTK VVQTASGDMQTYQIRTTPSATSLPQTVVMT VVMTSPVTLTSQTTKTDDPQLKREIRLMKN R T T T K T 1 0 0 0 0 2 0 0 0 0 2 1 1 0 3 4 9 0 0 3 0 0 26 0 2676.3892 P18846 P18846 183 208 ATF1 Cyclic AMP-dependent transcription factor ATF-1 yes yes 2;3 9.8756E-16 100.35 By MS/MS By MS/MS 6.5 0.5 3 3 2 4 49921000 0 16556000 33365000 13755 601 14456 60161;60162;60163;60164;60165;60166 50368;50369;50370;50371 50371 4 0 7509900 5261200 TTPSVVAFTADGER EGKQAKVLENAEGARTTPSVVAFTADGERL RTTPSVVAFTADGERLVGMPAKRQAVTNPN R T T E R L 2 1 0 1 0 0 1 1 0 0 0 0 0 1 1 1 3 0 0 2 0 0 14 0 1449.71 P38646 P38646 86 99 HSPA9 Stress-70 protein, mitochondrial yes yes 2 0.00072009 115 By MS/MS 3 0 1 1 16449000 0 16449000 0 13756 774 14457 60167 50372 50372 1 0 7012400 0 TTPSYVAFTDTER QHGKVEIIANDQGNRTTPSYVAFTDTERLI NRTTPSYVAFTDTERLIGDAAKNQVAMNPT R T T E R L 1 1 0 1 0 0 1 0 0 0 0 0 0 1 1 1 4 0 1 1 0 0 13 0 1486.694 P54652;P11142;P0DMV9;P0DMV8;P17066;P48741 P11142 37 49 HSPA2;HSPA8;HSPA1B;HSPA1A;HSPA6;HSPA7 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 no no 2 2.3214E-17 192.12 By MS/MS By MS/MS By MS/MS 5.1 2.93 3 2 3 1 3 2 2 1 2 2 3 8 10 1015400000 71022000 325150000 619200000 13757 517;501;930;582 14458 60168;60169;60170;60171;60172;60173;60174;60175;60176;60177;60178;60179;60180;60181;60182;60183;60184;60185;60186;60187;60188 50373;50374;50375;50376;50377;50378;50379;50380;50381;50382;50383;50384;50385;50386;50387;50388;50389;50390;50391;50392;50393 50385 21 81097000 258600000 213170000 TTQIINITMTK VFLDSGRKTRSARRRTTQIINITMTKKLDV ARRRTTQIINITMTKKLDVEEPDSANSSFY R T T T K K 0 0 1 0 0 1 0 0 0 3 0 1 1 0 0 0 4 0 0 0 0 0 11 0 1262.6904 Q14980 Q14980 1811 1821 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0012681 111.61 By matching By MS/MS 2.33 1.89 2 1 1 2 38975000 2483100 0 36491000 13758 1327 14459 60189;60190;60191 50394;50395 50394 2 2483100 0 7557600 TTQIPQYLYEGGISR NLDNAVLIGETGSGKTTQIPQYLYEGGISR TTQIPQYLYEGGISRQGIIAVTQPRRVAAI K T T S R Q 0 1 0 0 0 2 1 2 0 2 1 0 0 0 1 1 2 0 2 0 0 0 15 0 1724.8733 Q9H6R0 Q9H6R0 104 118 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 2 0.00046836 111.79 By MS/MS 3 0 1 1 6744800 0 6744800 0 13759 1987 14460 60192 50396 50396 1 0 2875300 0 TTQITQYLAEAGYTSR DNQILIVIGETGSGKTTQITQYLAEAGYTS TQITQYLAEAGYTSRGKIGCTQPRRVAAMS K T T S R G 2 1 0 0 0 2 1 1 0 1 1 0 0 0 0 1 4 0 2 0 0 0 16 0 1801.8846 Q14562 Q14562 595 610 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 3.7666E-05 120.47 By MS/MS 1.5 0.5 1 1 2 6766000 0 6766000 0 13760 1304 14461 60193;60194 50397 50397 1 0 3090200 0 TTQQIDLQGPGPWGFR ______________________________ TQQIDLQGPGPWGFRLVGGKDFEQPLAISR M T T F R L 0 1 0 1 0 3 0 3 0 1 1 0 0 1 2 0 2 1 0 0 0 0 16 0 1799.8955 O00151 O00151 2 17 PDLIM1 PDZ and LIM domain protein 1 yes yes 2 8.3017E-19 188.96 By matching By MS/MS 5.5 0.5 1 1 1 1 13625000 633680 12991000 0 13761 105 14462 60195;60196 50398;50399 50399 2 507660 4497000 0 TTQVPQFILDDFIQNDR QNSVVIIRGATGCGKTTQVPQFILDDFIQN QVPQFILDDFIQNDRAAECNIVVTQPRRIS K T T D R A 0 1 1 3 0 3 0 0 0 2 1 0 0 2 1 0 2 0 0 1 0 0 17 0 2049.0167 Q08211 Q08211 418 434 DHX9 ATP-dependent RNA helicase A yes yes 2;3 9.7401E-61 228.07 By MS/MS By MS/MS 2 0.913 4 5 2 1 6 6 138540000 0 31511000 107030000 13762 1182 14463 60197;60198;60199;60200;60201;60202;60203;60204;60205;60206;60207;60208 50400;50401;50402;50403;50404;50405;50406;50407;50408;50409;50410;50411 50408 11 0 14317000 22646000 TTQVTQFILDNYIER NHQVTVISGETGCGKTTQVTQFILDNYIER TTQVTQFILDNYIERGKGSACRIVCTQPRR K T T E R G 0 1 1 1 0 2 1 0 0 2 1 0 0 1 0 0 3 0 1 1 0 0 15 0 1839.9367 Q9H2U1 Q9H2U1 237 251 DHX36 ATP-dependent RNA helicase DHX36 yes yes 3 0.0053577 65.477 By MS/MS 2 0 1 1 2917300 0 0 2917300 13763 1976 14464 60209 50412 50412 1 0 0 659260 TTSGALFPSLVPGSR ______________________________ TTSGALFPSLVPGSRGASNKYLVEFRAGKM M T T S R G 1 1 0 0 0 0 0 2 0 0 2 0 0 1 2 3 2 0 0 1 0 0 15 0 1488.7936 Q16186 Q16186 2 16 ADRM1 Proteasomal ubiquitin receptor ADRM1 yes yes 2 0.0035578 78.692 By MS/MS By matching 5.5 0.5 1 1 1 1 2379400 0 1138300 1241200 13764 1384 14465 60210;60211 50413 50413 1 0 293410 185690 TTSGYAGGLSSAYGGLTSPGLSYSLGSSFGSGAGSSSFSR SRLESGMQNMSIHTKTTSGYAGGLSSAYGG GSSFGSGAGSSSFSRTSSSRAVVVKKIETR K T T S R T 3 1 0 0 0 0 0 10 0 0 4 0 0 2 1 13 3 0 3 0 0 0 40 0 3724.7129 CON__P05787;P05787 CON__P05787 415 454 KRT8 Keratin, type II cytoskeletal 8 yes no 3 1.7216E-125 212.1 By MS/MS By MS/MS 4 0.632 1 3 1 1 4 146580000 0 29940000 116640000 + 13765 49 14466 60212;60213;60214;60215;60216 50414;50415;50416;50417;50418;50419;50420;50421;50422 50417 9 0 9936000 18938000 TTSNDIVEIFTVLGIEAVR SLMRVLSEKDVDPVRTTSNDIVEIFTVLGI DIVEIFTVLGIEAVRKALERELYHVISFDG R T T V R K 1 1 1 1 0 0 2 1 0 3 1 0 0 1 0 1 3 0 0 3 0 0 19 0 2076.1103 P24928 P24928 1357 1375 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2;3 0.0013398 76.262 By MS/MS 1 0 2 2 1391000 0 0 1391000 13766 653 14467 60217;60218 50423;50424 50423 2 0 0 299710 TTSPPEVSGYSYEK RTPEEGGYSYDISEKTTSPPEVSGYSYEKT KTTSPPEVSGYSYEKTERSRRLLDDISNGY K T T E K T 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 3 2 0 2 1 0 0 14 0 1543.7042 P46821 P46821 1963 1976 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2 0.063887 61.641 By MS/MS 1 0 1 1 2622700 0 2622700 0 13767 834 14468 60219 50425 50425 1 0 1281900 0 TTSSQWQSPPVVVILK TVTQKTDPKMLSKKRTTSSQWQSPPVVVIL TSSQWQSPPVVVILKDMESFATKVLQDFII R T T L K D 0 0 0 0 0 2 0 0 0 1 1 1 0 0 2 3 2 1 0 3 0 0 16 0 1768.9723 Q9UBD5 Q9UBD5 205 220 ORC3 Origin recognition complex subunit 3 yes yes 2 0.0049969 80.979 By MS/MS By MS/MS 3 0 2 1 1 11890000 0 3577100 8312500 13768 2130 14469 60220;60221 50426;50427 50426 2 0 1524900 1612200 TTTAAAVASTGPSSR PASRSGSKSTQTVAKTTTAAAVASTGPSSR TTTAAAVASTGPSSRSPSTLLPKKPTAIKT K T T S R S 4 1 0 0 0 0 0 1 0 0 0 0 0 0 1 3 4 0 0 1 0 0 15 0 1376.6896 P27816 P27816 810 824 MAP4 Microtubule-associated protein 4 yes yes 2 9.4769E-51 184.44 By MS/MS By MS/MS 2.57 1.18 2 1 2 2 3 4 20391000 0 6016700 14374000 13769 683 14470 60222;60223;60224;60225;60226;60227;60228 50428;50429;50430;50431;50432;50433 50430 6 0 2447700 2839300 TTTIYEEDKR KKNKTLEYKIEILEKTTTIYEEDKRNLQQE EILEKTTTIYEEDKRNLQQELETQNQKLQR K T T K R N 0 1 0 1 0 0 2 0 0 1 0 1 0 0 0 0 3 0 1 0 0 0 10 1 1254.6092 Q02241 Q02241 578 587 KIF23 Kinesin-like protein KIF23 yes yes 3 0.067458 38.402 By MS/MS By matching 2.5 0.5 1 1 1 1 4142400 0 2419700 1722700 13770 1145 14471 60229;60230 50434 50434 1 0 1089600 334120 TTTLSGTAPAAGVVPSR DLSRPKSTSTSSMKKTTTLSGTAPAAGVVP TLSGTAPAAGVVPSRVKATPMPSRPSTTPF K T T S R V 3 1 0 0 0 0 0 2 0 0 1 0 0 0 2 2 4 0 0 2 0 0 17 0 1584.8471 P27816 P27816 872 888 MAP4 Microtubule-associated protein 4 yes yes 2 3.3146E-09 168.98 By MS/MS By MS/MS 3.73 1.6 1 2 2 2 2 2 5 6 171310000 0 60819000 110490000 13771 683 14472 60231;60232;60233;60234;60235;60236;60237;60238;60239;60240;60241 50435;50436;50437;50438;50439;50440;50441;50442;50443 50442 9 0 22624000 22064000 TTTVNIGSISTADGSALVK KENCRPDGRELGEFRTTTVNIGSISTADGS NIGSISTADGSALVKLGNTTVICGVKAEFA R T T V K L 2 0 1 1 0 0 0 2 0 2 1 1 0 0 0 3 4 0 0 2 0 0 19 0 1833.9684 Q96B26 Q96B26 34 52 EXOSC8 Exosome complex component RRP43 yes yes 2 6.7406E-09 134.06 By MS/MS By MS/MS 6 0 2 1 1 24567000 0 9943300 14623000 13772 1754 14473 60242;60243 50444;50445 50444 2 0 3442000 2187800 TTVISAVGTIVK LPAVVTVTTSASGSKTTVISAVGTIVKKAK GSKTTVISAVGTIVKKAKQ___________ K T T V K K 1 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 3 0 0 3 0 0 12 0 1187.7125 Q9UHR5 Q9UHR5 293 304 SAP30BP SAP30-binding protein yes yes 2 0.0049715 103.26 By MS/MS 5 0 1 1 10319000 0 0 10319000 13773 2155 14474 60244 50446 50446 1 0 0 1439300 TTVPQLLASVQR EEQRRGLLEDVQEGRTTVPQLLASVQRWVQ EGRTTVPQLLASVQRWVQETKLLAQARVMV R T T Q R W 1 1 0 0 0 2 0 0 0 0 2 0 0 0 1 1 2 0 0 2 0 0 12 0 1311.751 P58107 P58107 1170 1181 EPPK1 Epiplakin yes yes 2;3 0.022014 68.525 By MS/MS 1 0 2 2 9904300 0 9904300 0 13774 958 14475 60245;60246 50447;50448 50448 2 0 4841100 0 TTVQQEPLESGAK QLLAPPPPSAPPGNKTTVQQEPLESGAKNK NKTTVQQEPLESGAKNKSTEQQQAAPEPDP K T T A K N 1 0 0 0 0 2 2 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 13 0 1386.6991 P49750 P49750 258 270 YLPM1 YLP motif-containing protein 1 yes yes 2 0.00032903 140.3 By MS/MS By MS/MS 1 0 2 1 1 8352900 0 2856700 5496200 13775 865 14476 60247;60248 50449;50450 50449 2 0 1396300 1184200 TTYLVLDEADR RLIDFLECGKTNLRRTTYLVLDEADRMLDM NLRRTTYLVLDEADRMLDMGFEPQIRKIVD R T T D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 2 0 1 1 0 0 11 0 1294.6405 P17844 P17844 242 252 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 3.6971E-07 157.96 By MS/MS 2.5 1.12 1 1 1 1 4 82584000 0 0 82584000 13776 588 14477 60249;60250;60251;60252 50451;50452 50452 2 0 0 15711000 TVAAELAIFR TDCNVLLGAPTGSGKTVAAELAIFRVFNKY TGSGKTVAAELAIFRVFNKYPTSKAVYIAP K T V F R V 3 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 10 0 1089.6182 Q8N3C0 Q8N3C0 1356 1365 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 2 0.00093988 104.06 By MS/MS 1 0 1 1 0 0 0 0 13777 1602 14478 60253 50453 50453 1 0 0 0 TVAAPSVFIFPPSDEQLK ______________________________ APSVFIFPPSDEQLKSGTASVVCLLNNFYP R T V L K S 2 0 0 1 0 1 1 0 0 1 1 1 0 2 3 2 1 0 0 2 0 0 18 0 1945.0197 P01834 P01834 2 19 IGKC Ig kappa chain C region yes yes 2;3 6.3761E-17 182.89 By MS/MS By matching 5.35 3.38 3 2 2 1 1 1 1 1 2 3 14 3 142360000 137810000 0 4547800 13778 380 14479 60254;60255;60256;60257;60258;60259;60260;60261;60262;60263;60264;60265;60266;60267;60268;60269;60270 50454;50455;50456;50457;50458;50459;50460;50461;50462;50463;50464;50465;50466;50467;50468;50469;50470;50471;50472;50473;50474;50475;50476;50477;50478;50479;50480;50481;50482;50483 50466 29 124360000 0 971100 TVAGGAWTYNTTSAVTVK KRRAVGIWHCGSCMKTVAGGAWTYNTTSAV GGAWTYNTTSAVTVKSAIRRLKELKDQ___ K T V V K S 3 0 1 0 0 0 0 2 0 0 0 1 0 0 0 1 5 1 1 3 0 0 18 0 1825.921 P61513 P61513 63 80 RPL37A 60S ribosomal protein L37a yes yes 2 6.5946E-33 154.47 By MS/MS By MS/MS By MS/MS 9.2 0.748 1 2 2 1 2 2 36962000 2382900 17130000 17449000 13779 995 14480 60271;60272;60273;60274;60275 50484;50485;50486;50487 50486 3 1337600 56086000 11859000 TVAGQDAVIVLLGTR HVVVGDVLQAADVDKTVAGQDAVIVLLGTR TVAGQDAVIVLLGTRNDLSPTTVMSEGARN K T V T R N 2 1 0 1 0 1 0 2 0 1 2 0 0 0 0 0 2 0 0 3 0 0 15 0 1511.8671 P30043 P30043 64 78 BLVRB Flavin reductase (NADPH) yes yes 2 0.00040174 137.16 By matching By MS/MS 7 0 2 1 1 9262600 520070 0 8742500 13780 706 14481 60276;60277 50488 50488 1 1120900 0 1551300 TVAHSPTALISGGTDTHLVFRPLMEK WVRTKPFQHHTHDVRTVAHSPTALISGGTD GGTDTHLVFRPLMEKVEVKNYDAALRKITF R T V E K V 2 1 0 1 0 0 1 2 2 1 3 1 1 1 2 2 4 0 0 2 0 0 26 1 2777.4534 Q969X6 Q969X6 292 317 CIRH1A Cirhin yes yes 3;5 3.6381E-06 73.981 By MS/MS By MS/MS 3 0 3 1 2 19367000 0 4184900 15183000 13781 1746 14482 60278;60279;60280 50489;50490;50491 50490 2 0 1784000 2944700 TVALDGTLFQK EDARRIAFGGHQRHKTVALDGTLFQKSGVI QRHKTVALDGTLFQKSGVISGGASDLKAKA K T V Q K S 1 0 0 1 0 1 0 1 0 0 2 1 0 1 0 0 2 0 0 1 0 0 11 0 1191.6499 Q14683 Q14683 638 648 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.00010685 140.84 By matching By MS/MS 1.67 0.471 1 2 1 2 81490000 2434800 0 79055000 13782 1312 14483 60281;60282;60283 50492;50493 50492 2 2933600 0 17446000 TVALWDLR NPYSEFILATGSADKTVALWDLRNLKLKLH ATGSADKTVALWDLRNLKLKLHSFESHKDE K T V L R N 1 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 1 1 0 1 0 0 8 0 972.53927 Q09028;Q16576 Q09028 297 304 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 9.2203E-05 147.52 By MS/MS By MS/MS By MS/MS 3.82 1.4 1 1 2 3 3 1 3 4 4 166440000 14075000 36652000 115720000 13783 1188;1390 14484 60284;60285;60286;60287;60288;60289;60290;60291;60292;60293;60294 50494;50495;50496;50497;50498;50499;50500;50501;50502;50503;50504 50502 11 11525000 10373000 18065000 TVANLLSGK AGKTGNSMPHPATGKTVANLLSGKSPRKSA HPATGKTVANLLSGKSPRKSAEPSANTTLV K T V G K S 1 0 1 0 0 0 0 1 0 0 2 1 0 0 0 1 1 0 0 1 0 0 9 0 901.52328 Q13428 Q13428 147 155 TCOF1 Treacle protein yes yes 2 0.013257 86.67 By MS/MS 1.5 0.5 1 1 2 108640000 0 0 108640000 13784 1247 14485 60295;60296 50505;50506 50505 2 0 0 24210000 TVAQSQQLETNSQR DAGNSDRVVIQEMLKTVAQSQQLETNSQRD KTVAQSQQLETNSQRDFKVVLLTEVDKLTK K T V Q R D 1 1 1 0 0 4 1 0 0 0 1 0 0 0 0 2 2 0 0 1 0 0 14 0 1588.7805 P40938 P40938 114 127 RFC3 Replication factor C subunit 3 yes yes 2 1.5359E-11 180.97 By MS/MS 6 0 1 1 3263100 0 3263100 0 13785 788 14486 60297 50507 50507 1 0 1129600 0 TVASSLGQIPMQR QAHVSGFKHKNQSPKTVASSLGQIPMQRQP PKTVASSLGQIPMQRQPIQKDSTTLED___ K T V Q R Q 1 1 0 0 0 2 0 1 0 1 1 0 1 0 1 2 1 0 0 1 0 0 13 0 1386.7289 Q9UL40 Q9UL40 270 282 ZNF346 Zinc finger protein 346 yes yes 2 1.0606E-11 182.4 By MS/MS By MS/MS 6 0 2 1 1 29455000 0 14272000 15183000 13786 2187 14487 60298;60299 50508;50509 50508 2 0 4940400 2271600 TVASTAMNSQSSR ALDTVSCLEQGNNSRTVASTAMNSQSSRSH SRTVASTAMNSQSSRSHAIFTISLEQRKKS R T V S R S 2 1 1 0 0 1 0 0 0 0 0 0 1 0 0 4 2 0 0 1 0 0 13 0 1338.6198 O95239;Q2VIQ3 O95239 199 211 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 2.5789E-08 114.83 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 3011100 0 0 3011100 13787 314 14488 60300;60301;60302 50510;50511;50512 50510 3 0 0 662950 TVATLSILGTR ALRTLVGICSEHQSRTVATLSILGTRRVVS HQSRTVATLSILGTRRVVSILGVESQAVSL R T V T R R 1 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 3 0 0 1 0 0 11 0 1130.6659 Q9H3U1 Q9H3U1 230 240 UNC45A Protein unc-45 homolog A yes yes 2 0.00032792 127.4 By MS/MS 2 0 1 1 3618200 0 3618200 0 13788 1980 14489 60303 50513 50513 1 0 1629300 0 TVATPLNQVANPNSAIFGGAR EEERAQRPRLQLKPRTVATPLNQVANPNSA NQVANPNSAIFGGARPREEVVQKEQE____ R T V A R P 4 1 3 0 0 1 0 2 0 1 1 0 0 1 2 1 2 0 0 2 0 0 21 0 2097.0967 Q15056 Q15056 217 237 EIF4H Eukaryotic translation initiation factor 4H yes yes 2;3 2.3054E-46 214.48 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 44475000 0 9677600 34797000 13789 1340 14490 60304;60305;60306;60307;60308 50514;50515;50516;50517;50518 50517 5 0 5556900 5999300 TVATPLNQVANPNSAIFGGARPR EEERAQRPRLQLKPRTVATPLNQVANPNSA VANPNSAIFGGARPREEVVQKEQE______ R T V P R E 4 2 3 0 0 1 0 2 0 1 1 0 0 1 3 1 2 0 0 2 0 0 23 1 2350.2506 Q15056 Q15056 217 239 EIF4H Eukaryotic translation initiation factor 4H yes yes 3 1.7494E-07 86.546 By MS/MS 7 0 1 1 42047000 0 42047000 0 13790 1340 14491 60309 50519 50519 1 0 24144000 0 TVAVIGGISR IEEETIKFGKPLGIRTVAVIGGISREDQGF PLGIRTVAVIGGISREDQGFRLRMGCEIVI R T V S R E 1 1 0 0 0 0 0 2 0 2 0 0 0 0 0 1 1 0 0 2 0 0 10 0 971.57638 Q9BUQ8 Q9BUQ8 499 508 DDX23 Probable ATP-dependent RNA helicase DDX23 yes yes 2 0.013413 90.657 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 32664000 0 4852500 27811000 13791 1909 14492 60310;60311;60312 50520;50521 50520 1 0 2185100 6137000 TVAVWDSETGER YNTDGSMLFSASTDKTVAVWDSETGERVKR TDKTVAVWDSETGERVKRLKGHTSFVNSCY K T V E R V 1 1 0 1 0 0 2 1 0 0 0 0 0 0 0 1 2 1 0 2 0 0 12 0 1348.6259 Q96DI7 Q96DI7 132 143 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2 4.5919E-18 192.26 By MS/MS 5 0 1 1 30433000 0 0 30433000 13792 1767 14493 60313 50522 50522 1 0 0 4244900 TVDFTQDSNYLLTGGQDK SGDELMTLAHKHIVKTVDFTQDSNYLLTGG FTQDSNYLLTGGQDKLLRIYDLNKPEAEPK K T V D K L 0 0 1 3 0 2 0 2 0 0 2 1 0 1 0 1 3 0 1 1 0 0 18 0 2000.9327 Q9Y3F4 Q9Y3F4 105 122 STRAP Serine-threonine kinase receptor-associated protein yes yes 2 2.5595E-09 155.42 By MS/MS 5 0 1 1 8450500 0 0 8450500 13793 2275 14494 60314 50523 50523 1 0 0 1178700 TVDLSSHLAK ASSEAPPLINEDVKRTVDLSSHLAKVTAEV EDVKRTVDLSSHLAKVTAEVVLAHLGGGST R T V A K V 1 0 0 1 0 0 0 0 1 0 2 1 0 0 0 2 1 0 0 1 0 0 10 0 1069.5768 P04843 P04843 39 48 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2 0.013543 86.67 By MS/MS 3 0 1 1 3531600 0 3531600 0 13794 419 14495 60315 50524 50524 1 0 1505500 0 TVDNFVALATGEK VGRVIFGLFGKTVPKTVDNFVALATGEKGF PKTVDNFVALATGEKGFGYKNSKFHRVIKD K T V E K G 2 0 1 1 0 0 1 1 0 0 1 1 0 1 0 0 2 0 0 2 0 0 13 0 1363.6983 P23284 P23284 72 84 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 6.4029E-05 156.58 By matching By MS/MS By MS/MS 7.88 1.05 4 2 1 1 1 2 5 546700000 3315100 113470000 429920000 13795 640 14496 60316;60317;60318;60319;60320;60321;60322;60323 50525;50526;50527;50528;50529;50530 50528 6 2846100 65153000 88398000 TVEAPLVTEEK LESAPSALEKTTGDKTVEAPLVTEEKTVEP TGDKTVEAPLVTEEKTVEPATVSEEAKPAS K T V E K T 1 0 0 0 0 0 3 0 0 0 1 1 0 0 1 0 2 0 0 2 0 0 11 0 1214.6394 Q96T58 Q96T58 1662 1672 SPEN Msx2-interacting protein yes yes 2 0.042886 75.509 By MS/MS 1 0 1 1 7121900 0 0 7121900 13796 1839 14497 60324 50531 50531 1 0 0 1534500 TVEDLDGLIQQIYR EYVTNKTKKTEELRKTVEDLDGLIQQIYRD KTVEDLDGLIQQIYRDQDLTQEIAMEHFVK K T V Y R D 0 1 0 2 0 2 1 1 0 2 2 0 0 0 0 0 1 0 1 1 0 0 14 0 1661.8625 Q9ULX6 Q9ULX6 449 462 AKAP8L A-kinase anchor protein 8-like yes yes 3 0.022546 53.754 By matching By MS/MS 2.5 0.5 1 1 1 1 3266700 0 460340 2806400 13797 2195 14498 60325;60326 50532 50532 1 0 207300 544300 TVEEVTVER AVSTPVKHADDHTPKTVEEVTVERNEKQTP DDHTPKTVEEVTVERNEKQTPSLPEPKPVY K T V E R N 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 3 0 0 9 0 1060.5401 Q07157 Q07157 366 374 TJP1 Tight junction protein ZO-1 yes yes 2 0.00299 101.64 By MS/MS 1 0 1 1 7854300 0 0 7854300 13798 1177 14499 60327 50533 50533 1 0 0 1692300 TVEGAGSIAAATGFVK VGGAVVTGVTAVAQKTVEGAGSIAAATGFV VEGAGSIAAATGFVKKDQLGKNEEGAPQEG K T V V K K 4 0 0 0 0 0 1 3 0 1 0 1 0 1 0 1 2 0 0 2 0 0 16 0 1477.7777 P37840 P37840 81 96 SNCA Alpha-synuclein yes yes 2;3 1.0257E-27 190.46 By MS/MS By MS/MS By MS/MS 8.07 2.31 6 3 5 5 9 5 7 34 57 52 23 41 119 52642000000 14477000000 9179900000 28986000000 13799 769 14500 60328;60329;60330;60331;60332;60333;60334;60335;60336;60337;60338;60339;60340;60341;60342;60343;60344;60345;60346;60347;60348;60349;60350;60351;60352;60353;60354;60355;60356;60357;60358;60359;60360;60361;60362;60363;60364;60365;60366;60367;60368;60369;60370;60371;60372;60373;60374;60375;60376;60377;60378;60379;60380;60381;60382;60383;60384;60385;60386;60387;60388;60389;60390;60391;60392;60393;60394;60395;60396;60397;60398;60399;60400;60401;60402;60403;60404;60405;60406;60407;60408;60409;60410;60411;60412;60413;60414;60415;60416;60417;60418;60419;60420;60421;60422;60423;60424;60425;60426;60427;60428;60429;60430;60431;60432;60433;60434;60435;60436;60437;60438;60439;60440;60441;60442;60443;60444;60445;60446;60447;60448;60449;60450;60451;60452;60453;60454;60455;60456;60457;60458;60459;60460;60461;60462;60463;60464;60465;60466;60467;60468;60469;60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481;60482;60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497;60498;60499;60500;60501;60502;60503;60504;60505;60506;60507;60508;60509;60510 50534;50535;50536;50537;50538;50539;50540;50541;50542;50543;50544;50545;50546;50547;50548;50549;50550;50551;50552;50553;50554;50555;50556;50557;50558;50559;50560;50561;50562;50563;50564;50565;50566;50567;50568;50569;50570;50571;50572;50573;50574;50575;50576;50577;50578;50579;50580;50581;50582;50583;50584;50585;50586;50587;50588;50589;50590;50591;50592;50593;50594;50595;50596;50597;50598;50599;50600;50601;50602;50603;50604;50605;50606;50607;50608;50609;50610;50611;50612;50613;50614;50615;50616;50617;50618;50619;50620;50621;50622;50623;50624;50625;50626;50627;50628;50629;50630;50631;50632;50633;50634;50635;50636;50637;50638;50639;50640;50641;50642;50643;50644;50645;50646;50647;50648;50649;50650;50651;50652;50653;50654;50655;50656;50657;50658;50659;50660;50661;50662;50663;50664;50665;50666;50667;50668;50669;50670;50671;50672;50673;50674;50675;50676;50677;50678;50679;50680;50681;50682;50683;50684;50685;50686;50687;50688;50689;50690;50691;50692;50693;50694;50695;50696;50697;50698;50699;50700;50701;50702;50703;50704;50705;50706;50707;50708;50709;50710;50711;50712;50713;50714;50715;50716;50717;50718;50719;50720;50721;50722;50723;50724;50725;50726;50727;50728;50729;50730;50731;50732;50733;50734;50735;50736;50737;50738;50739;50740;50741;50742;50743;50744;50745;50746;50747;50748;50749;50750;50751;50752;50753;50754;50755;50756;50757;50758;50759;50760;50761;50762;50763;50764;50765;50766;50767;50768;50769;50770;50771;50772;50773;50774;50775;50776;50777;50778;50779;50780;50781;50782;50783;50784;50785;50786;50787;50788;50789;50790;50791;50792;50793;50794;50795;50796;50797;50798;50799;50800;50801;50802;50803;50804;50805;50806;50807;50808;50809;50810;50811;50812;50813;50814;50815;50816;50817;50818;50819;50820;50821;50822;50823;50824;50825;50826;50827;50828;50829;50830;50831;50832;50833;50834;50835;50836;50837;50838;50839;50840;50841;50842;50843;50844;50845;50846 50595 310 16296000000 23441000000 23710000000 TVEGAGSIAAATGFVKK VGGAVVTGVTAVAQKTVEGAGSIAAATGFV EGAGSIAAATGFVKKDQLGKNEEGAPQEGI K T V K K D 4 0 0 0 0 0 1 3 0 1 0 2 0 1 0 1 2 0 0 2 0 0 17 1 1605.8726 P37840 P37840 81 97 SNCA Alpha-synuclein yes yes 2;3 1.0572E-75 245.69 By MS/MS By MS/MS By MS/MS 7.11 2.56 4 1 1 4 5 6 9 8 8 14 16 16 10750000000 4156900000 2163200000 4429600000 13800 769 14501 60511;60512;60513;60514;60515;60516;60517;60518;60519;60520;60521;60522;60523;60524;60525;60526;60527;60528;60529;60530;60531;60532;60533;60534;60535;60536;60537;60538;60539;60540;60541;60542;60543;60544;60545;60546;60547;60548;60549;60550;60551;60552;60553;60554;60555;60556 50847;50848;50849;50850;50851;50852;50853;50854;50855;50856;50857;50858;50859;50860;50861;50862;50863;50864;50865;50866;50867;50868;50869;50870;50871;50872;50873;50874;50875;50876;50877;50878;50879;50880;50881;50882;50883;50884;50885;50886;50887;50888;50889;50890;50891;50892;50893;50894;50895;50896;50897;50898;50899;50900;50901;50902;50903;50904;50905;50906;50907;50908;50909;50910;50911;50912;50913;50914;50915;50916;50917;50918 50858 70 5613900000 8363300000 2041100000 TVEGAGSIAAATGFVKKDQLGK VGGAVVTGVTAVAQKTVEGAGSIAAATGFV IAAATGFVKKDQLGKNEEGAPQEGILEDMP K T V G K N 4 0 0 1 0 1 1 4 0 1 1 3 0 1 0 1 2 0 0 2 0 0 22 2 2147.1586 P37840 P37840 81 102 SNCA Alpha-synuclein yes yes 3;4 5.2184E-15 119.87 By MS/MS By MS/MS By MS/MS 9.33 0.745 2 4 6 5 2 5 147800000 53772000 19575000 74451000 13801 769 14502 60557;60558;60559;60560;60561;60562;60563;60564;60565;60566;60567;60568 50919;50920;50921;50922;50923;50924;50925;50926;50927;50928 50922 10 70076000 99033000 37117000 TVEGVLIVHEHR FQRMREEFDKIGMRRTVEGVLIVHEHRLPH MRRTVEGVLIVHEHRLPHVLLLQLGTTFFK R T V H R L 0 1 0 0 0 0 2 1 2 1 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1387.7572 O43809 O43809 79 90 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2;3 3.9486E-25 196.27 By matching By MS/MS By MS/MS 7.2 0.4 4 1 1 1 3 81732000 2584800 12631000 66517000 13802 213 14503 60569;60570;60571;60572;60573 50929;50930;50931 50931 3 5570800 7252600 11774000 TVELPLNKEEIER LATVKKQLSRVKSKKTVELPLNKEEIERIH KKTVELPLNKEEIERIHREVAFNKTAQVLS K T V E R I 0 1 1 0 0 0 4 0 0 1 2 1 0 0 1 0 1 0 0 1 0 0 13 1 1568.841 Q9BVJ6 Q9BVJ6 115 127 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 3 0.010723 69.716 By MS/MS 2 0 1 1 8036000 0 0 8036000 13803 1915 14504 60574 50932 50932 1 0 0 1816000 TVENIKDPLFR NWLHLIPQTLSHLKRTVENIKDPLFRFFER HLKRTVENIKDPLFRFFEREVKMGAKLLQD R T V F R F 0 1 1 1 0 0 1 0 0 1 1 1 0 1 1 0 1 0 0 1 0 0 11 1 1330.7245 Q14204 Q14204 4401 4411 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0071237 78.342 By MS/MS 1 0 1 1 3089800 0 3089800 0 13804 1292 14505 60575 50933 50933 1 0 1510200 0 TVEQTATTTNK TFADKEKKKEKKKAKTVEQTATTTNKKPGQ KKAKTVEQTATTTNKKPGQGTPNSANTQGN K T V N K K 1 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 5 0 0 1 0 0 11 0 1192.5935 P08579 P08579 112 122 SNRPB2 U2 small nuclear ribonucleoprotein B yes yes 2 0.070573 68.893 By MS/MS 7 0 1 1 662140 0 662140 0 13805 473 14506 60576 50934 50934 1 0 380210 0 TVESEAASYLDQISR NFGVSIQEETVAELRTVESEAASYLDQISR TVESEAASYLDQISRYYITRAKLVSKIAKY R T V S R Y 2 1 0 1 0 1 2 0 0 1 1 0 0 0 0 3 1 0 1 1 0 0 15 0 1667.8002 P61289 P61289 167 181 PSME3 Proteasome activator complex subunit 3 yes yes 2 0.0005602 107.18 By MS/MS 6 0 1 1 4256600 0 0 4256600 13806 990 14507 60577 50935 50935 1 0 0 636830 TVESGLEVAAAPSVTPQAGTALLAPFPTQR VSVGALLPDATSSHRTVESGLEVAAAPSVT PQAGTALLAPFPTQRVCSNPPCETHETGTT R T V Q R V 6 1 0 0 0 2 2 2 0 0 3 0 0 1 4 2 4 0 0 3 0 0 30 0 2978.5713 P51610 P51610 1386 1415 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes yes 3 1.8616E-06 55.783 By MS/MS 2 0 1 1 2204100 0 2204100 0 13807 897 14508 60578 50936 50936 1 0 992520 0 TVETRDGQVINETSQHHDDLE LPLVDTHSKRTLLIKTVETRDGQVINETSQ GQVINETSQHHDDLE_______________ K T V L E - 0 1 1 3 0 2 3 1 2 1 1 0 0 0 0 1 3 0 0 2 0 0 21 1 2422.0997 P08670 P08670 446 466 VIM Vimentin yes yes 3;4 7.2243E-06 83.251 By MS/MS 4 0 2 2 39263000 0 0 39263000 13808 476 14509 60579;60580 50937;50938 50937 2 0 0 6412900 TVEVAEGEAVR KNRKKLSEKPKPNGRTVEVAEGEAVRTPQS PNGRTVEVAEGEAVRTPQSVTAKQPPEIDK R T V V R T 2 1 0 0 0 0 3 1 0 0 0 0 0 0 0 0 1 0 0 3 0 0 11 0 1158.5881 Q86UE4 Q86UE4 132 142 MTDH Protein LYRIC yes yes 2 5.1855E-10 123.86 By matching By MS/MS 5.5 1.5 1 2 1 1 3 19114000 0 3753300 15361000 13809 1546 14510 60581;60582;60583;60584 50939;50940 50939 2 0 1299300 2450800 TVFAEHISDECK IVGYVETPRGLRTFKTVFAEHISDECKRRF TFKTVFAEHISDECKRRFYKNWHKSKKKAF K T V C K R 1 0 0 1 1 0 2 0 1 1 0 1 0 1 0 1 1 0 0 1 0 0 12 0 1434.6449 P39023 P39023 104 115 RPL3 60S ribosomal protein L3 yes yes 3 0.024427 58.313 By MS/MS 5 0 1 1 25757000 0 0 25757000 13810 778 14511 60585 50941 50941 1 0 0 3592700 TVFDEAIR VKYLECSALTQRGLKTVFDEAIRAVLCPPP LTQRGLKTVFDEAIRAVLCPPPVKKRKRKC K T V I R A 1 1 0 1 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 1 0 0 8 0 949.4869 P63000;P60763;P15153 P63000 167 174 RAC1;RAC3;RAC2 Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 3;Ras-related C3 botulinum toxin substrate 2 yes no 2 0.010876 92.677 By MS/MS By MS/MS 7 0 2 1 1 18956000 0 3167200 15789000 13811 1056 14512 60586;60587 50942;50943 50943 2 0 1818600 2801600 TVFRPPLDIYDVLIR LEKQLMDPRGPGDIRTVFRPPLDIYDVLIR TVFRPPLDIYDVLIRLSPRHIPRHRQAVDS R T V I R L 0 2 0 2 0 0 0 0 0 2 2 0 0 1 2 0 1 0 1 2 0 0 15 1 1816.0247 Q9H6R4 Q9H6R4 999 1013 NOL6 Nucleolar protein 6 yes yes 2;3 0.00024531 141.37 By MS/MS By MS/MS 2 0.632 1 3 1 1 4 40969000 0 8011000 32958000 13812 1988 14513 60588;60589;60590;60591;60592 50944;50945;50946;50947 50944 4 0 3607500 7323100 TVGALQVLGTEAQSSLLK LLAALECYNTFIGERTVGALQVLGTEAQSS ALQVLGTEAQSSLLKAVAFFLESIAMHDII R T V L K A 2 0 0 0 0 2 1 2 0 0 4 1 0 0 0 2 2 0 0 2 0 0 18 0 1814.0149 P78527 P78527 1275 1292 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 4.716E-52 226.04 By matching By MS/MS By MS/MS 1 0 5 1 2 2 46046000 1102400 13635000 31309000 13813 1089 14514 60593;60594;60595;60596;60597 50948;50949;50950;50951;50952 50948 5 1102400 6664700 6745900 TVGFGTNNSEHITYLEHNPYEK LLHHPYEPSGNKKGKTVGFGTNNSEHITYL NSEHITYLEHNPYEKFSKEELKKAQDVLVQ K T V E K F 0 0 3 0 0 0 3 2 2 1 1 1 0 1 1 1 3 0 2 1 0 0 22 0 2549.1823 Q99459 Q99459 602 623 CDC5L Cell division cycle 5-like protein yes yes 3;4 4.158E-05 76.186 By MS/MS By MS/MS 2.6 0.8 3 1 1 2 3 50641000 0 16066000 34575000 13814 1843 14515 60598;60599;60600;60601;60602 50953;50954;50955 50953 3 0 7234800 6834100 TVGMLSNMIAFYDMAR QNGYTPYDRFCPFYKTVGMLSNMIAFYDMA VGMLSNMIAFYDMARRAVETTAQSDNKITW K T V A R R 2 1 1 1 0 0 0 1 0 1 1 0 3 1 0 1 1 0 1 1 0 0 16 0 1818.8467 P38606 P38606 537 552 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 2 5.2928E-05 138.94 By MS/MS 3 0 1 1 3641600 0 0 3641600 13815 773 14516 60603 50956 50956 1 0 0 706290 TVGPYGETFNK ELSSRLDQQVEDFRRTVGPYGETFNKAMVQ DFRRTVGPYGETFNKAMVQQLDTLRQKLGP R T V N K A 0 0 1 0 0 0 1 2 0 0 0 1 0 1 1 0 2 0 1 1 0 0 11 0 1211.5823 CON__Q32PJ2 CON__Q32PJ2 306 316 yes yes 2 0.0056708 99.653 By MS/MS By MS/MS 6.4 1.02 1 2 1 1 3 2 105730000 64005000 0 41730000 + 13816 81 14517 60604;60605;60606;60607;60608 50957;50958;50959 50959 3 97038000 0 5976100 TVGQLYK TALPGAFKTRKGMFRTVGQLYKEQLAKLMA KTRKGMFRTVGQLYKEQLAKLMATLRNTNP R T V Y K E 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 807.44905 P35579;P35580;Q7Z406 P35579 645 651 MYH9;MYH10;MYH14 Myosin-9;Myosin-10;Myosin-14 no no 2 0.060859 74.717 By MS/MS 1 0 1 1 67037000 0 67037000 0 13817 752;753;1531 14518 60609 50960 50960 1 0 32767000 0 TVGVEPAADGK KARNSFRYNGLIHRKTVGVEPAADGKGVVV IHRKTVGVEPAADGKGVVVVIKRRSGQRKP K T V G K G 2 0 0 1 0 0 1 2 0 0 0 1 0 0 1 0 1 0 0 2 0 0 11 0 1042.5295 P46779 P46779 48 58 RPL28 60S ribosomal protein L28 yes yes 2 0.015193 86.898 By MS/MS By MS/MS 7 0.707 1 2 1 1 3 49030000 0 2886400 46144000 13818 830 14519 60610;60611;60612;60613 50961;50962 50961 1 0 1657400 7915300 TVIAQHHVAPR CVYELHVWLLAADRRTVIAQHHVAPRTSGR ADRRTVIAQHHVAPRTSGRGPPGRWVQVSH R T V P R T 2 1 0 0 0 1 0 0 2 1 0 0 0 0 1 0 1 0 0 2 0 0 11 0 1227.6836 Q6ZVX7 Q6ZVX7 207 217 NCCRP1 F-box only protein 50 yes yes 3 0.044317 49.3 By MS/MS 10 0 1 1 486150 0 0 486150 13819 1510 14520 60614 50963 50963 1 0 0 1063300 TVIGSVLLR LKEGSTAQLIINTEKTVIGSVLLRELKPVL IINTEKTVIGSVLLRELKPVLSQG______ K T V L R E 0 1 0 0 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 2 0 0 9 0 956.60187 O00203 O00203 1077 1085 AP3B1 AP-3 complex subunit beta-1 yes yes 2 0.00069791 130.27 By matching By MS/MS 3.67 1.49 2 1 1 1 1 1 5 20477000 1194600 0 19282000 13820 111 14521 60615;60616;60617;60618;60619;60620 50964 50964 1 1439300 0 3854200 TVIIEQSWGSPK LLADAVAVTMGPKGRTVIIEQSWGSPKVTK KGRTVIIEQSWGSPKVTKDGVTVAKSIDLK R T V P K V 0 0 0 0 0 1 1 1 0 2 0 1 0 0 1 2 1 1 0 1 0 0 12 0 1343.7085 P10809 P10809 61 72 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 3.9221E-06 161.63 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 58679000 0 24646000 34034000 13821 515 14522 60621;60622;60623 50965;50966;50967 50967 3 0 8179000 5927700 TVIIHDRPDITHPR ESDRREVRGERDERRTVIIHDRPDITHPRH RTVIIHDRPDITHPRHPREAGPNPSRPTSW R T V P R H 0 2 0 2 0 0 0 0 2 3 0 0 0 0 2 0 2 0 0 1 0 0 14 1 1668.906 Q9NWH9 Q9NWH9 855 868 SLTM SAFB-like transcription modulator yes yes 4 0.0085855 65.219 By MS/MS 1.5 0.5 1 1 2 42388000 0 0 42388000 13822 2078 14523 60624;60625 50968 50968 1 0 0 9394300 TVILEIPELLSPVEHYLK IIPAVNSHIQSDLLRTVILEIPELLSPVEH LEIPELLSPVEHYLKILNEQAAKVGDKTEL R T V L K I 0 0 0 0 0 0 3 0 1 2 4 1 0 0 2 1 1 0 1 2 0 0 18 0 2092.182 P20585 P20585 670 687 MSH3 DNA mismatch repair protein Msh3 yes yes 3 0.00025569 82.922 By MS/MS 2 0 1 1 2610000 0 0 2610000 13823 616 14524 60626 50969 50969 1 0 0 589800 TVINFTMPNTIK ATDVAARGLDIEGVKTVINFTMPNTIKHYV GVKTVINFTMPNTIKHYVHRVGRTARAGRA K T V I K H 0 0 2 0 0 0 0 0 0 2 0 1 1 1 1 0 3 0 0 1 0 0 12 0 1377.7326 Q96GQ7 Q96GQ7 534 545 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 3.2616E-05 150.1 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 49209000 0 14702000 34507000 13824 1793 14525 60627;60628;60629 50970;50971;50972 50970 3 0 6620500 7344000 TVIPGMPTVIPPGLTR KRKRSRWNQDTMEQKTVIPGMPTVIPPGLT VIPGMPTVIPPGLTREQERAYIVQLQIEDL K T V T R E 0 1 0 0 0 0 0 2 0 2 1 0 1 0 4 0 3 0 0 2 0 0 16 0 1647.9382 Q15637 Q15637 31 46 SF1 Splicing factor 1 yes yes 2 7.9191E-05 107.17 By matching By MS/MS By MS/MS 4 1.15 3 1 1 1 1 3 2 34552000 885010 17527000 16140000 13825 1376 14526 60630;60631;60632;60633;60634;60635 50973;50974;50975;50976;50977;50978 50973 6 1021100 6837100 2913400 TVITEEFKVPDK DDGVGNQLGALVHQRTVITEEFKVPDKMVG HQRTVITEEFKVPDKMVGFIIGRGGEQISR R T V D K M 0 0 0 1 0 0 2 0 0 1 0 2 0 1 1 0 2 0 0 2 0 0 12 1 1404.75 Q96I24 Q96I24 76 87 FUBP3 Far upstream element-binding protein 3 yes yes 2;3 0.012849 110.18 By MS/MS By MS/MS 3.67 0.471 1 2 2 1 46765000 0 23943000 22821000 13826 1797 14527 60636;60637;60638 50979;50980;50981 50979 3 0 7946000 4426200 TVITPDPNLSIDQVGVPR VRGNLMGKRVDFSARTVITPDPNLSIDQVG TPDPNLSIDQVGVPRSIAANMTFAEIVTPF R T V P R S 0 1 1 2 0 1 0 1 0 2 1 0 0 0 3 1 2 0 0 3 0 0 18 0 1920.0316 P24928 P24928 365 382 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 6.713E-23 192.63 By MS/MS By MS/MS 1 0 2 1 1 14425000 0 6698600 7726500 13827 653 14528 60639;60640 50982;50983 50982 2 0 3274200 1664800 TVLAAAYGEK LWILLILLFEQYVTKTVLAAAYGEKDAILE QYVTKTVLAAAYGEKDAILEADTEFWFSVC K T V E K D 3 0 0 0 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 10 0 1021.5444 Q9H583 Q9H583 1427 1436 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.060489 70.1 By MS/MS By matching 1.5 0.5 1 1 1 1 12222000 0 10279000 1942200 13828 1984 14529 60641;60642 50984 50984 1 0 5024400 438900 TVLDLIVEDLQSTSEDKEK QLCDLASPTALLIMRTVLDLIVEDLQSTSE LIVEDLQSTSEDKEKQYTSQTTRLLALLDA R T V E K Q 0 0 0 3 0 1 3 0 0 1 3 2 0 0 0 2 2 0 0 2 0 0 19 1 2161.1002 Q69YN4 Q69YN4 1198 1216 KIAA1429 Protein virilizer homolog yes yes 3 1.0216E-10 160.43 By MS/MS 1 0 1 1 6949900 0 0 6949900 13829 1468 14530 60643 50985 50985 1 0 0 1497500 TVLDPVTGDLSDTR FLYLNIGLQNGVLLRTVLDPVTGDLSDTRT RTVLDPVTGDLSDTRTRYLGSRPVKLFRVR R T V T R T 0 1 0 3 0 0 0 1 0 0 2 0 0 0 1 1 3 0 0 2 0 0 14 0 1487.7468 Q15393 Q15393 677 690 SF3B3 Splicing factor 3B subunit 3 yes yes 2 0.00020534 151.79 By matching By MS/MS By matching 1.5 0.5 2 2 1 2 1 60372000 2250300 34077000 24045000 13830 1361 14531 60644;60645;60646;60647 50986;50987 50987 2 2250300 15666000 5433600 TVLDQQQTPSR QVRRDYLKEAVTTLKTVLDQQQTPSRLAVT TTLKTVLDQQQTPSRLAVTRVIQALAMKGD K T V S R L 0 1 0 1 0 3 0 0 0 0 1 0 0 0 1 1 2 0 0 1 0 0 11 0 1271.647 P42704 P42704 1129 1139 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 5.0444E-05 144.77 By matching By MS/MS 2 0 2 1 1 6108400 3457700 2650700 0 13831 808 14532 60648;60649 50988 50988 1 4166100 1193700 0 TVLEHYALEDDPLAAFK AFLKTIALNGVEDVRTVLEHYALEDDPLAA LEHYALEDDPLAAFKQRQSRLEQEEQQRLA R T V F K Q 3 0 0 2 0 0 2 0 1 0 3 1 0 1 1 0 1 0 1 1 0 0 17 0 1930.9676 Q3ZCQ8 Q3ZCQ8 296 312 TIMM50 Mitochondrial import inner membrane translocase subunit TIM50 yes yes 2;3 0.0015454 69.805 By matching By MS/MS 6 0 3 1 2 9034600 0 484140 8550500 13832 1416 14533 60650;60651;60652 50989;50990 50989 2 0 167590 1279200 TVLELQYVLDK REQLMREEAEQKRLKTVLELQYVLDKLGDD KRLKTVLELQYVLDKLGDDEVRTDLKQGLN K T V D K L 0 0 0 1 0 1 1 0 0 0 3 1 0 0 0 0 1 0 1 2 0 0 11 0 1319.7337 Q14444 Q14444 148 158 CAPRIN1 Caprin-1 yes yes 2 0.0011567 112.75 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 2 4 46930000 0 5690000 41240000 13833 1301 14534 60653;60654;60655;60656;60657;60658 50991;50992;50993;50994;50995 50995 5 0 2507300 8299200 TVLELQYVLDKLGDDEVR REQLMREEAEQKRLKTVLELQYVLDKLGDD ELQYVLDKLGDDEVRTDLKQGLNGVPILSE K T V V R T 0 1 0 3 0 1 2 1 0 0 4 1 0 0 0 0 1 0 1 3 0 0 18 1 2104.1052 Q14444 Q14444 148 165 CAPRIN1 Caprin-1 yes yes 3 4.2786E-10 157.74 By MS/MS 1.5 0.5 1 1 2 4235200 0 0 4235200 13834 1301 14535 60659;60660 50996;50997 50997 2 0 0 921540 TVLELVTQYR QGGKDSQFNMAEGFRTVLELVTQYRQLCIY AEGFRTVLELVTQYRQLCIYWTINYNAKDK R T V Y R Q 0 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 2 0 1 2 0 0 10 0 1220.6765 Q9Y6K5 Q9Y6K5 997 1006 OAS3 2-5-oligoadenylate synthase 3 yes yes 2 3.6253E-06 153.08 By MS/MS 2 0 1 1 6948900 0 0 6948900 13835 2314 14536 60661 50998 50998 1 0 0 1570300 TVLEQVLPI EFEVIFPERIPQTSRTVLEQVLPI______ IPQTSRTVLEQVLPI_______________ R T V P I - 0 0 0 0 0 1 1 0 0 1 2 0 0 0 1 0 1 0 0 2 0 0 9 0 1010.6012 P25685 P25685 332 340 DNAJB1 DnaJ homolog subfamily B member 1 yes yes 2 0.0064748 94.407 By MS/MS By MS/MS By MS/MS 5.75 0.968 1 2 3 2 2 3 3 58542000 11896000 20453000 26193000 13836 660 14537 60662;60663;60664;60665;60666;60667;60668;60669 50999;51000;51001;51002;51003;51004 50999 6 11416000 8764900 4353700 TVLGEYNLFSR AAEAEPPAVSETTERTVLGEYNLFSRKIEE TTERTVLGEYNLFSRKIEEILKQKNVSYVS R T V S R K 0 1 1 0 0 0 1 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 11 0 1297.6667 Q9UK61 Q9UK61 1020 1030 FAM208A Protein FAM208A yes yes 2 0.00029851 133.13 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 16696000 0 7625500 9070100 13837 2175 14538 60670;60671;60672;60673 51005;51006;51007 51006 3 0 3527400 1995900 TVLGQQILGQLDSSSLALPSEAK ______________________________ GQLDSSSLALPSEAKLKLAGSSGRGGQTVK R T V A K L 2 0 0 1 0 3 1 2 0 1 5 1 0 0 1 4 1 0 0 1 0 0 23 0 2354.2693 Q99959 Q99959 15 37 PKP2 Plakophilin-2 yes yes 2;3 7.5849E-20 144.33 By MS/MS By MS/MS 2.17 0.687 1 3 2 2 4 29346000 0 3510200 25836000 13838 1870 14539 60674;60675;60676;60677;60678;60679 51008;51009;51010;51011 51011 4 0 1580700 5129600 TVLGTPEVLLGALPGAGGTQR VAISCQYRIATKDRKTVLGTPEVLLGALPG EVLLGALPGAGGTQRLPKMVGVPAALDMML K T V Q R L 2 1 0 0 0 1 1 5 0 0 4 0 0 0 2 0 3 0 0 2 0 0 21 0 2006.116 P40939 P40939 167 187 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2;3 5.6988E-07 97.49 By MS/MS By MS/MS 2.75 0.433 1 3 3 1 38075000 0 18505000 19569000 13839 789 14540 60680;60681;60682;60683 51012;51013;51014;51015;51016 51016 5 0 7908000 3795500 TVLHTGSAPSSSTPFNKEELSAILK VLDHLVIQRMDTTGKTVLHTGSAPSSSTPF SSTPFNKEELSAILKFGAEELFKEPEGEEQ K T V L K F 2 0 1 0 0 0 2 1 1 1 3 2 0 1 2 5 3 0 0 1 0 0 25 1 2613.365 O14646 O14646 946 970 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 3 1.8311E-05 68.97 By MS/MS 1 0 1 1 10479000 0 0 10479000 13840 141 14541 60684 51017 51017 1 0 0 2257800 TVLIMELINNVAK KGGKIGLFGGAGVGKTVLIMELINNVAKAH GKTVLIMELINNVAKAHGGYSVFAGVGERT K T V A K A 1 0 2 0 0 0 1 0 0 2 2 1 1 0 0 0 1 0 0 2 0 0 13 0 1456.8323 P06576 P06576 213 225 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 8.6591E-05 153.97 By matching By MS/MS By MS/MS 4.83 0.898 3 1 2 1 3 2 17197000 2667900 4043300 10486000 13841 444 14542 60685;60686;60687;60688;60689;60690 51018;51019;51020 51020 3 2081400 1208300 1699300 TVLMLADQMISR LEDLFNFCSRRFTMKTVLMLADQMISRIEY TMKTVLMLADQMISRIEYVHTKNFIHRDIK K T V S R I 1 1 0 1 0 1 0 0 0 1 2 0 2 0 0 1 1 0 0 1 0 0 12 0 1376.7156 P48729;Q8N752 P48729 112 123 CSNK1A1;CSNK1A1L Casein kinase I isoform alpha;Casein kinase I isoform alpha-like yes no 2 2.0744E-34 207.83 By matching By MS/MS By MS/MS 6 0 3 1 1 1 28691000 592480 13106000 14992000 13842 847 14543 60691;60692;60693 51021;51022 51021 2 788890 4536800 2243000 TVLQEIK LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT EFGDFDIKTVLQEIKRGKRMKCTLCSQPGA K T V I K R 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 7 0 829.49092 Q8IWS0 Q8IWS0 267 273 PHF6 PHD finger protein 6 yes yes 2 0.024818 97.068 By MS/MS 5.5 0.5 1 1 2 30104000 0 0 30104000 13843 1576 14544 60694;60695 51023 51023 1 0 0 4246500 TVLQEIKR LTTTSRAEFGDFDIKTVLQEIKRGKRMKCT FGDFDIKTVLQEIKRGKRMKCTLCSQPGAT K T V K R G 0 1 0 0 0 1 1 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 8 1 985.59203 Q8IWS0 Q8IWS0 267 274 PHF6 PHD finger protein 6 yes yes 2 0.040751 104.21 By MS/MS 5 0 1 1 7919300 0 0 7919300 13844 1576 14545 60696 51024 51024 0 0 0 1104600 TVLQLSLR LQKIYEANAKRFSRKTVLQLSLRILDILEY AKRFSRKTVLQLSLRILDILEYIHEHEYVH K T V L R I 0 1 0 0 0 1 0 0 0 0 3 0 0 0 0 1 1 0 0 1 0 0 8 0 928.57057 Q99986 Q99986 153 160 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2 3.2842E-10 174.27 By MS/MS By MS/MS 4.25 0.829 1 1 2 3 1 44589000 0 11513000 33077000 13845 1871 14546 60697;60698;60699;60700 51025;51026 51026 2 0 3104800 4613600 TVLQRPLSLIQGPPGTGK QGLPDLNHSQVYAVKTVLQRPLSLIQGPPG QRPLSLIQGPPGTGKTVTSATIVYHLARQG K T V G K T 0 1 0 0 0 2 0 3 0 1 3 1 0 0 3 1 2 0 0 1 0 0 18 1 1861.0785 Q92900 Q92900 492 509 UPF1 Regulator of nonsense transcripts 1 yes yes 3 7.1836E-09 115.57 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 17611000 0 9240700 8370400 13846 1729 14547 60701;60702;60703 51027;51028 51027 2 0 4193200 1891600 TVLQYRPVHIDPISR FKTLKDYNTALSLHKTVLQYRPVHIDPISR TVLQYRPVHIDPISRKQMLKFIARYEKKRS K T V S R K 0 2 0 1 0 1 0 0 1 2 1 0 0 0 2 1 1 0 1 2 0 0 15 1 1792.9948 Q8IXT5 Q8IXT5 346 360 RBM12B RNA-binding protein 12B yes yes 4 0.017593 53.491 By MS/MS By MS/MS 2 0 2 1 1 24573000 0 8288600 16285000 13847 1587 14548 60704;60705 51029;51030 51030 2 0 3732400 3680000 TVLVNADGEEVAMR VWKGQSSWGTGESFRTVLVNADGEEVAMRT RTVLVNADGEEVAMRTVKKSSVMRENENGE R T V M R T 2 1 1 1 0 0 2 1 0 0 1 0 1 0 0 0 1 0 0 3 0 0 14 0 1502.7399 Q03252 Q03252 562 575 LMNB2 Lamin-B2 yes yes 2 2.6421E-72 238.73 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 1 4 152500000 0 22969000 129530000 13848 1156 14549 60706;60707;60708;60709;60710 51031;51032;51033 51033 3 0 9791800 25590000 TVMENFVAFVDK ELLKHKPKATEEQLKTVMENFVAFVDKCCA QLKTVMENFVAFVDKCCAADDKEACFAVEG K T V D K C 1 0 1 1 0 0 1 0 0 0 0 1 1 2 0 0 1 0 0 3 0 0 12 0 1398.6853 CON__P02769 CON__P02769 569 580 yes yes 2 0.00050658 126.71 By MS/MS By MS/MS By MS/MS 5.78 2.56 1 2 5 7 2 5 2 5 4 3 20 6 10 498020000 406350000 40361000 51305000 + 13849 45 14550;14551 60711;60712;60713;60714;60715;60716;60717;60718;60719;60720;60721;60722;60723;60724;60725;60726;60727;60728;60729;60730;60731;60732;60733;60734;60735;60736;60737;60738;60739;60740;60741;60742;60743;60744;60745;60746 51034;51035;51036;51037;51038;51039;51040;51041;51042;51043;51044;51045;51046;51047;51048;51049;51050;51051;51052;51053;51054;51055;51056;51057 51036 22 24 353630000 13824000 12320000 TVMVNIENPEGIPVK YRIFTVNHKLLPVGRTVMVNIENPEGIPVK TVMVNIENPEGIPVKQDSLSSQNQLGVLPL R T V V K Q 0 0 2 0 0 0 2 1 0 2 0 1 1 0 2 0 1 0 0 3 0 0 15 0 1638.8651 P01024 P01024 162 176 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.019605 68.536 By MS/MS 9.5 0.5 1 1 2 10803000 10803000 0 0 13850 371 14552 60747;60748 51058 51058 1 8813100 0 0 TVMVQEGNVESAYR ______________________________ RTVMVQEGNVESAYRTLNRILTMDGLIEDI R T V Y R T 1 1 1 0 0 1 2 1 0 0 0 0 1 0 0 1 1 0 1 3 0 0 14 0 1581.7457 P82921 P82921 11 24 MRPS21 28S ribosomal protein S21, mitochondrial yes yes 2 2.068E-72 241.03 By MS/MS By MS/MS 9.33 0.471 2 1 1 2 25856000 0 3201500 22654000 13851 1101 14553;14554 60749;60750;60751 51059;51060;51061 51060 2 0 16197000 7236800 TVNELQNLSSAEVVVPR VPSFAAGRVIGKGGKTVNELQNLSSAEVVV NELQNLSSAEVVVPRDQTPDENDQVVVKIT K T V P R D 1 1 2 0 0 1 2 0 0 0 2 0 0 0 1 2 1 0 0 4 0 0 17 0 1853.9847 O00425 O00425 509 525 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 5.4701E-92 249.75 By MS/MS By MS/MS 4 1.73 3 1 3 1 68026000 0 43220000 24807000 13852 121 14555 60752;60753;60754;60755 51062;51063;51064;51065;51066 51066 5 0 19060000 4811300 TVNELQNLTAAEVVVPR VPASAAGRVIGKGGKTVNELQNLTAAEVVV NELQNLTAAEVVVPRDQTPDENDQVIVKII K T V P R D 2 1 2 0 0 1 2 0 0 0 2 0 0 0 1 0 2 0 0 4 0 0 17 0 1852.0054 Q9NZI8 Q9NZI8 509 525 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2;3 7.6418E-132 281.12 By MS/MS By MS/MS By MS/MS 4.48 2.38 2 2 6 2 2 1 4 2 2 13 6 370510000 7681700 221280000 141560000 13853 2104 14556 60756;60757;60758;60759;60760;60761;60762;60763;60764;60765;60766;60767;60768;60769;60770;60771;60772;60773;60774;60775;60776 51067;51068;51069;51070;51071;51072;51073;51074;51075;51076;51077;51078;51079;51080;51081;51082;51083;51084;51085;51086;51087;51088;51089 51071 22 8862900 100880000 27009000 TVNELQNLTSAEVIVPR VPSSTAGRVIGKGGKTVNELQNLTSAEVIV NELQNLTSAEVIVPRDQTPDENEEVIVRII K T V P R D 1 1 2 0 0 1 2 0 0 1 2 0 0 0 1 1 2 0 0 3 0 0 17 0 1882.016 Q9Y6M1 Q9Y6M1 531 547 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 yes yes 2;3 9.2511E-111 267.67 By MS/MS By MS/MS 3.62 1.41 1 4 2 1 6 2 99090000 0 61943000 37147000 13854 2315 14557 60777;60778;60779;60780;60781;60782;60783;60784 51090;51091;51092;51093;51094;51095;51096 51090 7 0 23960000 7204800 TVNMDYLSLLR DLALHMSLRTYSSKRTVNMDYLSLLRDALV SSKRTVNMDYLSLLRDALVQPLTSQGVDGV R T V L R D 0 1 1 1 0 0 0 0 0 0 3 0 1 0 0 1 1 0 1 1 0 0 11 0 1323.6857 P35251 P35251 993 1003 RFC1 Replication factor C subunit 1 yes yes 2 3.8613E-59 230.06 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 10623000 0 913670 9709000 13855 746 14558 60785;60786;60787 51097;51098;51099 51099 2 0 446590 2194100 TVNTFSQSVSSLFGEDNVR GARGRGGAEKNSYRRTVNTFSQSVSSLFGE FSQSVSSLFGEDNVRAAQKFLARLTERFVL R T V V R A 0 1 2 1 0 1 1 1 0 0 1 0 0 2 0 4 2 0 0 3 0 0 19 0 2085.9967 Q8WY22 Q8WY22 49 67 BRI3BP BRI3-binding protein yes yes 2;3 1.4938E-65 236.92 By matching By MS/MS 7.75 0.433 1 3 1 3 25777000 0 707970 25069000 13856 1699 14559 60788;60789;60790;60791 51100;51101 51100 2 0 322100 3916600 TVPEELVKPEELSK DKATVLTTERKKRGKTVPEELVKPEELSKY KTVPEELVKPEELSKYRQVASHVGLHSASI K T V S K Y 0 0 0 0 0 0 4 0 0 0 2 2 0 0 2 1 1 0 0 2 0 0 14 1 1596.8611 Q9UMS4 Q9UMS4 193 206 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3 4.4059E-33 208.17 By MS/MS By MS/MS 3 1.28 2 2 2 4 1 4 7 228790000 0 26365000 202430000 13857 2199 14560 60792;60793;60794;60795;60796;60797;60798;60799;60800;60801;60802 51102;51103;51104;51105;51106;51107;51108;51109;51110 51109 9 0 9640000 34132000 TVPLYESPR LTIGTIDEIQKLHIRTVPLYESPRKICYQE QKLHIRTVPLYESPRKICYQEVSQCFGVLS R T V P R K 0 1 0 0 0 0 1 0 0 0 1 0 0 0 2 1 1 0 1 1 0 0 9 0 1060.5553 Q16531 Q16531 714 722 DDB1 DNA damage-binding protein 1 yes yes 2 0.0083422 91.064 By MS/MS By matching 2.5 0.5 1 1 1 1 14438000 0 8965700 5471800 13858 1387 14561 60803;60804 51111 51111 1 0 4037400 1061300 TVPVEAVTSK STFEDVTQVSSAYQKTVPVEAVTSKTSNIR SAYQKTVPVEAVTSKTSNIRANFENLAKEK K T V S K T 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 1 2 0 0 3 0 0 10 0 1029.5706 Q14247 Q14247 337 346 CTTN Src substrate cortactin yes yes 2 0.050681 72.643 By MS/MS 3 0 1 1 3956800 0 3956800 0 13859 1295 14562 60805 51112 51112 1 0 1686800 0 TVPVFESVEAAVLLPEEPVSQLGVK KICIIWDLQSCQATRTVPVFESVEAAVLLP AVLLPEEPVSQLGVKSPGLYFLTAGDQGTL R T V V K S 2 0 0 0 0 1 4 1 0 0 3 1 0 1 3 2 1 0 0 6 0 0 25 0 2636.4313 Q12788 Q12788 232 256 TBL3 Transducin beta-like protein 3 yes yes 3 0.064691 18.403 By MS/MS By matching 2.5 0.5 1 1 1 1 3402300 0 658870 2743500 13860 1197 14563 60806;60807 51113 51113 1 0 296700 532100 TVPVSSNDTPPSALQEAAPLTSSMDPLPVFLYPPVQR PGTKVTIRASRGQPRTVPVSSNDTPPSALQ SMDPLPVFLYPPVQRSIQKRAVRKMSVMGR R T V Q R S 3 1 1 2 0 2 1 0 0 0 4 0 1 1 8 5 3 0 1 4 0 0 37 0 3920.987 Q7Z3K3 Q7Z3K3 699 735 POGZ Pogo transposable element with ZNF domain yes yes 3;4 8.1732E-09 53.819 By MS/MS 2 0 2 2 2285400 0 2285400 0 13861 1530 14564 60808;60809 51114;51115 51114 2 0 1029100 0 TVQDALESLVAR PFFTLQLDIQSDKIRTVQDALESLVARESV KIRTVQDALESLVARESVQGYTTKTKQEVE R T V A R E 2 1 0 1 0 1 1 0 0 0 2 0 0 0 0 1 1 0 0 2 0 0 12 0 1300.6987 Q14694 Q14694 642 653 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes yes 2 0.0011251 116.77 By MS/MS 2 0 1 1 6296000 0 6296000 0 13862 1316 14565 60810 51116 51116 1 0 2835200 0 TVQIAAVVDVIR DDNPKTFYWDFYTNRTVQIAAVVDVIRELG TNRTVQIAAVVDVIRELGICPDDAAVIPIK R T V I R E 2 1 0 1 0 1 0 0 0 2 0 0 0 0 0 0 1 0 0 4 0 0 12 0 1282.7609 P12273 P12273 107 118 PIP Prolactin-inducible protein yes yes 2;3 0.00039124 128.01 By MS/MS By MS/MS By MS/MS 6.57 3.04 2 1 1 1 1 4 2 2 11 1 2 194640000 185800000 3498100 5346700 13863 537 14566 60811;60812;60813;60814;60815;60816;60817;60818;60819;60820;60821;60822;60823;60824 51117;51118;51119;51120;51121;51122;51123;51124;51125;51126;51127;51128;51129;51130;51131;51132 51119 16 188140000 1591500 986930 TVQLTSSELESTLETLK DAHLLVESKNLDFQKTVQLTSSELESTLET QLTSSELESTLETLKAENQPIRDVLKQLIL K T V L K A 0 0 0 0 0 1 3 0 0 0 4 1 0 0 0 3 4 0 0 1 0 0 17 0 1877.9834 P42704 P42704 656 672 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 1.4045E-27 203.82 By matching By MS/MS By MS/MS 2 0 3 1 1 1 22803000 2332500 6531500 13939000 13864 808 14567 60825;60826;60827 51133;51134 51134 2 2810400 2941200 3150000 TVQPVAMGPDGLPVDASSVSNNYIQTLGR TETTVKKVVKTVTTRTVQPVAMGPDGLPVD DASSVSNNYIQTLGRDFRKNGNGGPGPYVG R T V G R D 2 1 2 2 0 2 0 3 0 1 2 0 1 0 3 3 2 0 1 4 0 0 29 0 2985.4866 O60716 O60716 152 180 CTNND1 Catenin delta-1 yes yes 3 2.104E-27 117.73 By MS/MS 1.5 0.5 1 1 2 3697300 0 3697300 0 13865 230 14568 60828;60829 51135 51135 1 0 1694900 0 TVQSLEIDLDSMR AEVGAAETTLTELRRTVQSLEIDLDSMRNL RRTVQSLEIDLDSMRNLKASLENSLREVEA R T V M R N 0 1 0 2 0 1 1 0 0 1 2 0 1 0 0 2 1 0 0 1 0 0 13 0 1505.7396 P05783;CON__H-INV:HIT000015463 P05783 302 314 KRT18 Keratin, type I cytoskeletal 18 yes no 2 7.5364E-46 227.27 By MS/MS By MS/MS By MS/MS 3.87 1.75 2 2 2 2 5 1 1 1 6 8 692610000 19630000 187010000 485960000 13866 436 14569;14570 60830;60831;60832;60833;60834;60835;60836;60837;60838;60839;60840;60841;60842;60843;60844 51136;51137;51138;51139;51140;51141;51142;51143;51144;51145;51146;51147;51148;51149;51150;51151;51152;51153 51149 158 18 15726000 49873000 72705000 TVQSNSPISALAPTGK ENKQFKEEDGLRMRKTVQSNSPISALAPTG VQSNSPISALAPTGKEEGLSTRLLALVVLF K T V G K E 2 0 1 0 0 1 0 1 0 1 1 1 0 0 2 3 2 0 0 1 0 0 16 0 1569.8362 O95292 O95292 201 216 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 2 9.4086E-06 155.02 By MS/MS By MS/MS 7.5 1.5 1 2 1 1 3 21385000 0 3810500 17574000 13867 317 14571 60845;60846;60847;60848 51154;51155;51156;51157 51154 3 0 2188000 7773900 TVQTAVFLYSLYK QGTDTILADEMGLGKTVQTAVFLYSLYKEG GKTVQTAVFLYSLYKEGHSKGPFLVSAPLS K T V Y K E 1 0 0 0 0 1 0 0 0 0 2 1 0 1 0 1 2 0 2 2 0 0 13 0 1531.8286 Q14839 Q14839 758 770 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.0049595 100.55 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 12082000 0 5795500 6286500 13868 1321 14572 60849;60850 51158;51159 51158 2 0 2832800 1420600 TVQVVPHITDAIQEWVMR QYVINKERKGDYLGKTVQVVPHITDAIQEW VVPHITDAIQEWVMRQALIPVDEDGLEPQV K T V M R Q 1 1 0 1 0 2 1 0 1 2 0 0 1 0 1 0 2 1 0 4 0 0 18 0 2121.1041 P17812 P17812 110 127 CTPS1 CTP synthase 1 yes yes 3 0.0035008 59.434 By MS/MS 3 0 1 1 491270 0 491270 0 13869 587 14573 60851 51160 51160 1 0 209430 0 TVSGVNGPLVILDHVK AVSRNYLSQPRLTYKTVSGVNGPLVILDHV VSGVNGPLVILDHVKFPRYAEIVHLTLPDG K T V V K F 0 0 1 1 0 0 0 2 1 1 2 1 0 0 1 1 1 0 0 4 0 0 16 0 1646.9356 P21281 P21281 49 64 ATP6V1B2 V-type proton ATPase subunit B, brain isoform yes yes 3 0.033865 41.871 By MS/MS 4 0 1 1 4887200 0 4887200 0 13870 621 14574 60852 51161 51161 1 0 1621900 0 TVSLGAGAK FKVDNDENEHQLSLRTVSLGAGAKDELHIV HQLSLRTVSLGAGAKDELHIVEAEAMNYEG R T V A K D 2 0 0 0 0 0 0 2 0 0 1 1 0 0 0 1 1 0 0 1 0 0 9 0 802.45487 P06748 P06748 46 54 NPM1 Nucleophosmin yes yes 2 0.0041756 98.523 By MS/MS By MS/MS By MS/MS 6.5 0.5 3 3 2 2 2 87439000 5994800 36348000 45096000 13871 449 14575 60853;60854;60855;60856;60857;60858 51162;51163;51164;51165;51166 51165 5 8481700 14562000 7367500 TVSLGAGAKDELHIVEAEAMNYEGSPIK FKVDNDENEHQLSLRTVSLGAGAKDELHIV IVEAEAMNYEGSPIKVTLATLKMSVQPTVS R T V I K V 4 0 1 1 0 0 4 3 1 2 2 2 1 0 1 2 1 0 1 2 0 0 28 1 2928.4539 P06748 P06748 46 73 NPM1 Nucleophosmin yes yes 2;3;4 0 362.24 By MS/MS By MS/MS 6.2 1.03 1 3 10 3 3 4 16 1084900000 0 159170000 925720000 13872 449 14576;14577 60859;60860;60861;60862;60863;60864;60865;60866;60867;60868;60869;60870;60871;60872;60873;60874;60875;60876;60877;60878 51167;51168;51169;51170;51171;51172;51173;51174;51175;51176;51177;51178;51179;51180;51181;51182;51183;51184;51185;51186;51187;51188;51189 51185 164 23 0 55099000 138740000 TVSLLDENNVSSYLSK SRSQGCSEQVLTVLKTVSLLDENNVSSYLS VSLLDENNVSSYLSKNILAFRDQNILLGTT K T V S K N 0 0 2 1 0 0 1 0 0 0 3 1 0 0 0 4 1 0 1 2 0 0 16 0 1767.8891 P78527 P78527 3303 3318 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 2.2974E-18 186.58 By MS/MS By matching 2 0.816 1 1 1 2 1 19417000 0 10158000 9259100 13873 1089 14578 60879;60880;60881 51190 51190 1 0 4842700 1795800 TVSPDRLELEAAQK ______________________________ KTVSPDRLELEAAQKFLERAAVENLPTFLV K T V Q K F 2 1 0 1 0 1 2 0 0 0 2 1 0 0 1 1 1 0 0 1 0 0 14 1 1555.8206 Q14974 Q14974 10 23 KPNB1 Importin subunit beta-1 yes yes 2;3 0.0067794 111.52 By MS/MS By MS/MS 2.4 0.49 3 2 1 4 46041000 0 9979500 36062000 13874 1325 14579 60882;60883;60884;60885;60886 51191;51192;51193;51194 51194 4 0 4493900 7402300 TVSQIISLQTLK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY GIKTVSQIISLQTLKKEYKSYEAKLRLLSS K T V L K K 0 0 0 0 0 2 0 0 0 2 2 1 0 0 0 2 2 0 0 1 0 0 12 0 1329.7868 O76021 O76021 125 136 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 4.9125E-35 215.06 By MS/MS By MS/MS By MS/MS 5.38 2.31 1 2 3 1 2 2 1 1 1 6 6 462680000 9439700 218720000 234530000 13875 295 14580 60887;60888;60889;60890;60891;60892;60893;60894;60895;60896;60897;60898;60899 51195;51196;51197;51198;51199;51200;51201;51202;51203;51204 51201 9 7364600 76678000 45841000 TVSQIISLQTLKK TEQFYRKLLNKHGIKTVSQIISLQTLKKEY IKTVSQIISLQTLKKEYKSYEAKLRLLSSF K T V K K E 0 0 0 0 0 2 0 0 0 2 2 2 0 0 0 2 2 0 0 1 0 0 13 1 1457.8817 O76021 O76021 125 137 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2;3 0.00057711 128.51 By MS/MS By MS/MS 3.67 0.745 3 2 1 5 1 63849000 0 54511000 9338100 13876 295 14581 60900;60901;60902;60903;60904;60905 51205;51206;51207;51208;51209 51209 5 0 20077000 1811100 TVSSSVIEQLFFVR PTRFGKLLLRLPSLRTVSSSVIEQLFFVRL RTVSSSVIEQLFFVRLVGKTPIETLIRDML R T V V R L 0 1 0 0 0 1 1 0 0 1 1 0 0 2 0 3 1 0 0 3 0 0 14 0 1610.8668 P24468;P10589 P24468 372 385 NR2F2;NR2F1 COUP transcription factor 2;COUP transcription factor 1 yes no 2 0.00050352 145.46 By MS/MS 5 0 1 1 6280900 0 6280900 0 13877 648 14582 60906 51210 51210 1 0 1619000 0 TVSVGLTLLR VQIGKGPTNNTCVVRTVSVGLTLLRVWDAE TCVVRTVSVGLTLLRVWDAEHPGLSDFMPL R T V L R V 0 1 0 0 0 0 0 1 0 0 3 0 0 0 0 1 2 0 0 2 0 0 10 0 1057.6495 Q8TEM1 Q8TEM1 1448 1457 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 5.3298E-05 149.65 By MS/MS 1 0 1 1 4690400 0 0 4690400 13878 1666 14583 60907 51211 51211 1 0 0 1010600 TVSVSEAIKK AEKAITGFDDPFSGKTVSVSEAIKKNLIDR PFSGKTVSVSEAIKKNLIDRETGMRLLEAQ K T V K K N 1 0 0 0 0 0 1 0 0 1 0 2 0 0 0 2 1 0 0 2 0 0 10 1 1060.6128 P15924 P15924 2104 2113 DSP Desmoplakin yes yes 2 0.0032977 107.57 By MS/MS By MS/MS 1 0 2 1 1 19755000 0 6178200 13577000 13879 572 14584 60908;60909 51212;51213 51213 2 0 3019800 2925400 TVTAAGAENIQQK QATQGNISSDRGKKRTVTAAGAENIQQKTD KRTVTAAGAENIQQKTDEKVDESGPPAPSK R T V Q K T 3 0 1 0 0 2 1 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 13 0 1329.6888 Q29RF7 Q29RF7 1240 1252 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.00070214 118.4 By MS/MS 1.5 0.5 1 1 2 5507700 0 0 5507700 13880 1405 14585 60910;60911 51214 51214 1 0 0 1209900 TVTAMDVVYALK VIRDAVTYTEHAKRKTVTAMDVVYALKRQG KRKTVTAMDVVYALKRQGRTLYGFGG____ K T V L K R 2 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 12 0 1309.6952 P62805 P62805 81 92 HIST1H4A Histone H4 yes yes 2;3 0.00018958 134.25 By MS/MS By MS/MS By MS/MS 7.51 2.51 5 2 5 2 4 5 8 16 35 14 10 29 57 28980000000 601800000 4804800000 23573000000 13881 1033 14586;14587 60912;60913;60914;60915;60916;60917;60918;60919;60920;60921;60922;60923;60924;60925;60926;60927;60928;60929;60930;60931;60932;60933;60934;60935;60936;60937;60938;60939;60940;60941;60942;60943;60944;60945;60946;60947;60948;60949;60950;60951;60952;60953;60954;60955;60956;60957;60958;60959;60960;60961;60962;60963;60964;60965;60966;60967;60968;60969;60970;60971;60972;60973;60974;60975;60976;60977;60978;60979;60980;60981;60982;60983;60984;60985;60986;60987;60988;60989;60990;60991;60992;60993;60994;60995;60996;60997;60998;60999;61000;61001;61002;61003;61004;61005;61006;61007 51215;51216;51217;51218;51219;51220;51221;51222;51223;51224;51225;51226;51227;51228;51229;51230;51231;51232;51233;51234;51235;51236;51237;51238;51239;51240;51241;51242;51243;51244;51245;51246;51247;51248;51249;51250;51251;51252;51253;51254;51255;51256;51257;51258;51259;51260;51261;51262;51263;51264;51265;51266;51267;51268;51269;51270;51271;51272;51273;51274;51275;51276;51277;51278;51279;51280;51281;51282;51283;51284;51285;51286;51287;51288;51289;51290;51291;51292;51293;51294;51295;51296;51297;51298;51299;51300;51301;51302;51303;51304;51305;51306;51307;51308;51309;51310;51311;51312;51313;51314;51315;51316;51317;51318;51319;51320;51321;51322;51323;51324;51325;51326;51327;51328;51329;51330;51331;51332;51333;51334;51335;51336;51337;51338;51339;51340;51341;51342;51343;51344;51345;51346;51347;51348;51349;51350;51351;51352;51353;51354;51355;51356;51357;51358;51359;51360;51361;51362;51363;51364;51365;51366;51367;51368;51369 51225 492 154 373070000 6897100000 10050000000 TVTAMDVVYALKR VIRDAVTYTEHAKRKTVTAMDVVYALKRQG RKTVTAMDVVYALKRQGRTLYGFGG_____ K T V K R Q 2 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 1 3 0 0 13 1 1465.7963 P62805 P62805 81 93 HIST1H4A Histone H4 yes yes 2;3 5.1165E-195 304.05 By matching By MS/MS By MS/MS 7.53 2.62 4 2 2 1 2 4 4 12 19 12 2 34 26 9231500000 4043800 2278100000 6949300000 13882 1033 14588;14589 61008;61009;61010;61011;61012;61013;61014;61015;61016;61017;61018;61019;61020;61021;61022;61023;61024;61025;61026;61027;61028;61029;61030;61031;61032;61033;61034;61035;61036;61037;61038;61039;61040;61041;61042;61043;61044;61045;61046;61047;61048;61049;61050;61051;61052;61053;61054;61055;61056;61057;61058;61059;61060;61061;61062;61063;61064;61065;61066;61067;61068;61069 51370;51371;51372;51373;51374;51375;51376;51377;51378;51379;51380;51381;51382;51383;51384;51385;51386;51387;51388;51389;51390;51391;51392;51393;51394;51395;51396;51397;51398;51399;51400;51401;51402;51403;51404;51405;51406;51407;51408;51409;51410;51411;51412;51413;51414;51415;51416;51417;51418;51419;51420;51421;51422;51423;51424;51425;51426;51427;51428;51429;51430;51431;51432;51433;51434;51435;51436;51437;51438 51414 492 67 4552000 4084100000 2107800000 TVTAMDVVYALKRQGR VIRDAVTYTEHAKRKTVTAMDVVYALKRQG VTAMDVVYALKRQGRTLYGFGG________ K T V G R T 2 2 0 1 0 1 0 1 0 0 1 1 1 0 0 0 2 0 1 3 0 0 16 2 1806.9774 P62805 P62805 81 96 HIST1H4A Histone H4 yes yes 2;3;4 2.3667E-89 258.92 By MS/MS 8.8 0.4 1 4 5 51073000 0 0 51073000 13883 1033 14590;14591 61070;61071;61072;61073;61074 51439;51440;51441;51442 51442 492 4 0 0 15993000 TVTLGGDVFDPHGTLSGGAR DNAKKVAFDKRIMTRTVTLGGDVFDPHGTL GDVFDPHGTLSGGARSQAASILTKFQELKD R T V A R S 1 1 0 2 0 0 0 5 1 0 2 0 0 1 1 1 3 0 0 2 0 0 20 0 1955.9701 O95347 O95347 649 668 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 4.5832E-14 127.32 By matching By MS/MS 1.5 0.5 1 1 1 1 25018000 0 1115500 23903000 13884 321 14592 61075;61076 51443 51443 1 0 545230 5401500 TVTLPENEDELESTNR APGVRVSGDDVIIGKTVTLPENEDELESTN VTLPENEDELESTNRRYTKRDCSTFLRTSE K T V N R R 0 1 2 1 0 0 4 0 0 0 2 0 0 0 1 1 3 0 0 1 0 0 16 0 1845.8592 P30876 P30876 870 885 POLR2B DNA-directed RNA polymerase II subunit RPB2 yes yes 2 4.0743E-05 147.24 By MS/MS 2 0 1 1 9401700 0 0 9401700 13885 715 14593 61077 51444 51444 1 0 0 2124600 TVTLVEAIK RPAPYIIFGPPGTGKTVTLVEAIKQVVKHL PPGTGKTVTLVEAIKQVVKHLPKAHILACA K T V I K Q 1 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 2 0 0 2 0 0 9 0 972.58555 Q9HCE1 Q9HCE1 531 539 MOV10 Putative helicase MOV-10 yes yes 2 0.023813 79.713 By MS/MS 3 0.816 1 1 1 3 6528200 0 6528200 0 13886 2011 14594 61078;61079;61080 51445 51445 1 0 2844100 0 TVTNAVVTVPAYFNDSQR VLTKMKEIAEAYLGKTVTNAVVTVPAYFND NAVVTVPAYFNDSQRQATKDAGTIAGLNVL K T V Q R Q 2 1 2 1 0 1 0 0 0 0 0 0 0 1 1 1 3 0 1 4 0 0 18 0 1980.9905 P11142 P11142 138 155 HSPA8 Heat shock cognate 71 kDa protein yes yes 2;3 8.971E-180 292.8 By MS/MS By MS/MS By MS/MS 4.14 2.3 3 3 5 3 3 4 1 1 13 8 683850000 13324000 323240000 347280000 13887 517 14595 61081;61082;61083;61084;61085;61086;61087;61088;61089;61090;61091;61092;61093;61094;61095;61096;61097;61098;61099;61100;61101;61102 51446;51447;51448;51449;51450;51451;51452;51453;51454;51455;51456;51457;51458;51459;51460;51461;51462;51463;51464;51465;51466;51467;51468;51469;51470;51471;51472 51453 26 15373000 138350000 66947000 TVTQVVPAEGQENGQR NGDDGTHDKGLKICRTVTQVVPAEGQENGQ VTQVVPAEGQENGQREEEEEEKEPEAEPPV R T V Q R E 1 1 1 0 0 3 2 2 0 0 0 0 0 0 1 0 2 0 0 3 0 0 16 0 1711.8489 Q9UKV3 Q9UKV3 920 935 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 8.289E-05 106.67 By MS/MS 3 0 1 1 1273500 0 1273500 0 13888 2184 14596 61103 51473 51473 1 0 542900 0 TVTSATIVYHLAR QRPLSLIQGPPGTGKTVTSATIVYHLARQG GKTVTSATIVYHLARQGNGPVLVCAPSNIA K T V A R Q 2 1 0 0 0 0 0 0 1 1 1 0 0 0 0 1 3 0 1 2 0 0 13 0 1430.7882 Q92900 Q92900 510 522 UPF1 Regulator of nonsense transcripts 1 yes yes 2;3 0.016055 81.865 By MS/MS 2 0 2 2 19545000 0 0 19545000 13889 1729 14597 61104;61105 51474;51475 51474 2 0 0 4416700 TVTSFYNQSAIDAAAEKPSVR ATDTHHVEMARERSKTVTSFYNQSAIDAAA NQSAIDAAAEKPSVRLTPTMMLYAGRSQDG K T V V R L 4 1 1 1 0 1 1 0 0 1 0 1 0 1 1 3 2 0 1 2 0 0 21 1 2254.123 O14874 O14874 49 69 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial yes yes 3 2.6524E-14 127.5 By MS/MS By MS/MS 5 0 2 1 1 28790000 0 10855000 17935000 13890 148 14598 61106;61107 51476;51477 51476 1 0 2798000 2501700 TVVEALFQR EESVFAVTAVNASEKTVVEALFQRDSLVRQ VNASEKTVVEALFQRDSLVRQSQLVVDWLE K T V Q R D 1 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 2 0 0 9 0 1061.5869 P57740 P57740 251 259 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.00030487 139.28 By matching By MS/MS 2.33 0.471 2 1 1 2 18172000 2357300 0 15814000 13891 956 14599 61108;61109;61110 51478;51479 51478 2 2840200 0 3497800 TVVLPPIVASR DTTCIKLKIDSEIKKTVVLPPIVASRGQSE EIKKTVVLPPIVASRGQSEEPAGKTKSMQE K T V S R G 1 1 0 0 0 0 0 0 0 1 1 0 0 0 2 1 1 0 0 3 0 0 11 0 1150.7074 O75152 O75152 443 453 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 0.024804 81.525 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 25977000 0 8022800 17954000 13892 244 14600 61111;61112;61113;61114;61115;61116 51480;51481;51482 51481 3 0 3562300 3774700 TVVNKDVFRDPALK HLMPTRYSVDIPLDKTVVNKDVFRDPALKR KTVVNKDVFRDPALKRKARREAKVKFEERY K T V L K R 1 1 1 2 0 0 0 0 0 0 1 2 0 1 1 0 1 0 0 3 0 0 14 2 1600.8937 P61353 P61353 94 107 RPL27 60S ribosomal protein L27 yes yes 3;4 0.0071884 72.891 By MS/MS By matching 7.75 0.433 1 3 3 1 13619000 0 9720400 3898800 13893 993 14601 61117;61118;61119;61120 51483;51484 51484 2 0 4626500 597730 TVVQPSVGAAAGPVVPPCPGR LGSPSGEVSHPRKTRTVVQPSVGAAAGPVV VGAAAGPVVPPCPGRIRHFKV_________ R T V G R I 3 1 0 0 1 1 0 3 0 0 0 0 0 0 5 1 1 0 0 5 0 0 21 0 2015.0622 P02765 P02765 341 361 AHSG Alpha-2-HS-glycoprotein;Alpha-2-HS-glycoprotein chain A;Alpha-2-HS-glycoprotein chain B yes yes 2 1.4045E-13 122.45 By MS/MS 9 0 1 1 1969500 1969500 0 0 13894 395 14602 61121 51485 51485 1 1105500 0 0 TVVSGSCAAHSLLITTEGK WGPHRYGCLAGVRVRTVVSGSCAAHSLLIT GSCAAHSLLITTEGKLWSWGRNEKGQLGHG R T V G K L 2 0 0 0 1 0 1 2 1 1 2 1 0 0 0 3 3 0 0 2 0 0 19 0 1929.983 Q9P258 Q9P258 152 170 RCC2 Protein RCC2 yes yes 2 1.531E-08 113.53 By MS/MS 4 0 1 1 10153000 0 0 10153000 13895 2120 14603 61122 51486 51486 1 0 0 1658300 TVVSHSLTTLGLEVAK FQNIPGSELMSSFAKTVVSHSLTTLGLEVA VVSHSLTTLGLEVAKQSQHDKIDASELSFP K T V A K Q 1 0 0 0 0 0 1 1 1 0 3 1 0 0 0 2 3 0 0 3 0 0 16 0 1653.9301 P42166 P42166 463 478 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2;3 1.3532E-59 232.42 By MS/MS 2.86 1.25 1 2 2 1 1 7 75605000 0 0 75605000 13896 798 14604 61123;61124;61125;61126;61127;61128;61129 51487;51488 51487 2 0 0 14753000 TVVYGITTGFGK VQKSREVIDSIIKEKTVVYGITTGFGKFAR KEKTVVYGITTGFGKFARTVIPINKLQELQ K T V G K F 0 0 0 0 0 0 0 3 0 1 0 1 0 1 0 0 3 0 1 2 0 0 12 0 1241.6656 P42357 P42357 161 172 HAL Histidine ammonia-lyase yes yes 2 0.0092144 95.573 By MS/MS By matching 1 0 2 1 1 8137900 6053000 2084900 0 13897 802 14605 61130;61131 51489 51489 1 6053000 1019100 0 TVYLFDR ASVGTEEDGGGVGHRTVYLFDRREKESELG DGGGVGHRTVYLFDRREKESELGDRPLQVG R T V D R R 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 7 0 912.47052 A6NHR9 A6NHR9 27 33 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.055398 76.035 By MS/MS 2 0.816 1 1 1 3 3921400 0 3921400 0 13898 15 14606 61132;61133;61134 51490 51490 1 0 1837700 0 TVYSHLFDHVVNR LKVEQANNARDALAKTVYSHLFDHVVNRVN AKTVYSHLFDHVVNRVNQCFPFETSSYFIG K T V N R V 0 1 1 1 0 0 0 0 2 0 1 0 0 1 0 1 1 0 1 3 0 0 13 0 1585.8001 Q9UM54 Q9UM54 426 438 MYO6 Unconventional myosin-VI yes yes 3 0.0032145 80.318 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 20794000 0 10464000 10330000 13899 2198 14607 61135;61136;61137 51491;51492 51492 2 0 4751300 2334300 TVYSILR PEEAIKCEDKFTKSKTVYSILRHVAEVLEY EDKFTKSKTVYSILRHVAEVLEYTKDEQLE K T V L R H 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 1 0 1 1 0 0 7 0 850.49125 P05198 P05198 107 113 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.0029208 139.92 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 118960000 0 52869000 66087000 13900 428 14608 61138;61139;61140;61141 51493;51494;51495 51494 3 0 18302000 9879700 TVYTGIDHHWK GYGDEEEPLHTILGKTVYTGIDHHWKEAVF ILGKTVYTGIDHHWKEAVFATCGQQVDIWD K T V W K E 0 0 0 1 0 0 0 1 2 1 0 1 0 0 0 0 2 1 1 1 0 0 11 0 1355.6622 Q9NV06 Q9NV06 157 167 DCAF13 DDB1- and CUL4-associated factor 13 yes yes 3 0.028454 57.019 By MS/MS By MS/MS 6.5 1.5 1 1 1 1 13498000 5142900 0 8355000 13901 2062 14609 61142;61143 51496;51497 51497 2 4415400 0 1165400 TWEGWEPWM KCLMDQATDPNILGRTWEGWEPWM______ PNILGRTWEGWEPWM_______________ R T W W M - 0 0 0 0 0 0 2 1 0 0 0 0 1 0 1 0 1 3 0 0 0 0 9 0 1220.4961 P78527 P78527 4120 4128 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 1 0.0024518 103.29 By MS/MS 1 0 1 1 860970 0 0 860970 13902 1089 14610 61144 51498 51498 0 0 0 185510 TWELSLYELHR ______________________________ NASKTWELSLYELHRTPQEAIMDGTEIAVS K T W H R T 0 1 0 0 0 0 2 0 1 0 3 0 0 0 0 1 1 1 1 0 0 0 11 0 1445.7303 Q06587 Q06587 13 23 RING1 E3 ubiquitin-protein ligase RING1 yes yes 2;3 0.004546 81.525 By MS/MS 4 0 2 2 14067000 0 0 14067000 13903 1171 14611 61145;61146 51499;51500 51499 2 0 0 2297700 TWFQEYMNSK SQVVNRAQHQLGEFKTWFQEYMNSKDRRLS LGEFKTWFQEYMNSKDRRLSPATENKLRLH K T W S K D 0 0 1 0 0 1 1 0 0 0 0 1 1 1 0 1 1 1 1 0 0 0 10 0 1332.5809 Q8N1F7 Q8N1F7 350 359 NUP93 Nuclear pore complex protein Nup93 yes yes 2 0.0018511 107.69 By MS/MS 3 0 1 1 4246300 0 0 4246300 13904 1599 14612 61147 51501 51501 1 0 0 823580 TWIPEVHDQK EPSQSTAAKVPKKAKTWIPEVHDQKADVSA PKKAKTWIPEVHDQKADVSAWKDLFVPRPV K T W Q K A 0 0 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 10 0 1251.6248 Q9GZR7 Q9GZR7 179 188 DDX24 ATP-dependent RNA helicase DDX24 yes yes 3 0.0050734 78.655 By MS/MS 2 0 1 1 6852000 0 0 6852000 13905 1952 14613 61148 51502 51502 1 0 0 1548400 TWKPTLVILR CGTDRNAYVWTLKGRTWKPTLVILRINRAA TLKGRTWKPTLVILRINRAARCVRWAPNEN R T W L R I 0 1 0 0 0 0 0 0 0 1 2 1 0 0 1 0 2 1 0 1 0 0 10 1 1225.7547 O15143 O15143 85 94 ARPC1B Actin-related protein 2/3 complex subunit 1B yes yes 3 0.00020243 112.36 By MS/MS By matching 6 0 2 1 1 4776300 0 3288100 1488300 13906 168 14614 61149;61150 51503 51503 1 0 1138200 222660 TWNDPSVQQDIK NPENTVFDAKRLIGRTWNDPSVQQDIKFLP IGRTWNDPSVQQDIKFLPFKVVEKKTKPYI R T W I K F 0 0 1 2 0 2 0 0 0 1 0 1 0 0 1 1 1 1 0 1 0 0 12 0 1429.6838 P11021 P11021 102 113 HSPA5 78 kDa glucose-regulated protein yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 55042000 0 11747000 43295000 13907 516 14615 61151;61152;61153 51504;51505 51505 2 0 5007700 8270700 TWTTADFR FGFGNGMKQMRRTWKTWTTADFRTKKKKRK QMRRTWKTWTTADFRTKKKKRKQGGSPDEP K T W F R T 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 3 1 0 0 0 0 8 0 996.46649 Q9ULX6 Q9ULX6 265 272 AKAP8L A-kinase anchor protein 8-like yes yes 2 0.0045431 101.28 By MS/MS 2 0.816 1 1 1 3 21766000 0 0 21766000 13908 2195 14616 61154;61155;61156 51506 51506 1 0 0 4376100 TWVPTSLQSLIDMAK VIYIDRGVVFVQGEKTWVPTSLQSLIDMAK TWVPTSLQSLIDMAK_______________ K T W A K - 1 0 0 1 0 1 0 0 0 1 2 1 1 0 1 2 2 1 0 1 0 0 15 0 1688.8807 Q9UBB9 Q9UBB9 823 837 TFIP11 Tuftelin-interacting protein 11 yes yes 2 0.034571 82.362 By MS/MS 2 0 1 1 1869500 0 0 1869500 13909 2129 14617 61157 51507 51507 0 0 0 422460 TWYPVSIPAFYNPVTSLLKPVGEK SFEDKLLMSDIVFMRTWYPVSIPAFYNPVT FYNPVTSLLKPVGEKDTWSGMRTTGQLRLA R T W E K D 1 0 1 0 0 0 1 1 0 1 2 2 0 1 4 2 2 1 2 3 0 0 24 1 2705.4469 Q14692 Q14692 1100 1123 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 4.7722E-06 77.649 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 13638000 0 724630 12914000 13910 1315 14618 61158;61159;61160 51508;51509;51510 51509 3 0 326310 2578500 TYAICGAIR AEVDKVTGRFNGQFKTYAICGAIRRMGESD FNGQFKTYAICGAIRRMGESDDSILRLAKA K T Y I R R 2 1 0 0 1 0 0 1 0 2 0 0 0 0 0 0 1 0 1 0 0 0 9 0 1023.5172 P63220 P63220 52 60 RPS21 40S ribosomal protein S21 yes yes 2 0.0033353 100.19 By MS/MS By MS/MS 10 0 2 1 1 37126000 0 10087000 27039000 13911 1066 14619 61161;61162 51511;51512 51511 2 0 51032000 59137000 TYALFIGDTVLVDEDGPATVLTSVK FSDLTNKEGKKPEEKTYALFIGDTVLVDED LVDEDGPATVLTSVKKKVKNVGIFLKNEDE K T Y V K K 2 0 0 3 0 0 1 2 0 1 3 1 0 1 1 1 4 0 1 4 0 0 25 0 2623.3633 Q9Y5B9 Q9Y5B9 398 422 SUPT16H FACT complex subunit SPT16 yes yes 2;3 3.8687E-25 129.93 By MS/MS 1.67 0.471 1 2 3 15007000 0 0 15007000 13912 2296 14620 61163;61164;61165 51513;51514 51514 2 0 0 3358500 TYDPSGDSTLPTCSK ALAKTEKYEHKSEVKTYDPSGDSTLPTCSK TYDPSGDSTLPTCSKKRKIEQVDKEDEITE K T Y S K K 0 0 0 2 1 0 0 1 0 0 1 1 0 0 2 3 3 0 1 0 0 0 15 0 1627.7036 Q9Y2X3 Q9Y2X3 427 441 NOP58 Nucleolar protein 58 yes yes 2 0.00028429 128.85 By MS/MS 3.5 0.5 1 1 2 9945300 0 0 9945300 13913 2254 14621 61166;61167 51515;51516 51515 2 0 0 1819600 TYEEGLKHEANNPQLK AAALEFLNRFEEAKRTYEEGLKHEANNPQL YEEGLKHEANNPQLKEGLQNMEARLAERKF R T Y L K E 1 0 2 0 0 1 3 1 1 0 2 2 0 0 1 0 1 0 1 0 0 0 16 1 1869.9221 P31948 P31948 94 109 STIP1 Stress-induced-phosphoprotein 1 yes yes 3 0.068365 34.191 By MS/MS 3 0 1 1 11816000 0 0 11816000 13914 726 14622 61168 51517 51517 1 0 0 2291700 TYEIWHR SLWQNEERAATVTKKTYEIWHRRHDYWLLA RAATVTKKTYEIWHRRHDYWLLAGIINHGY K T Y H R R 0 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 1 1 0 0 0 7 0 1003.4876 Q14839 Q14839 1725 1731 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.0062434 126.24 By MS/MS 1.5 0.5 1 1 2 21555000 0 0 21555000 13915 1321 14623 61169;61170 51518 51518 1 0 0 4702600 TYETTLEK RHPDYSVVLLLRLAKTYETTLEKCCAAADP LLLRLAKTYETTLEKCCAAADPHECYAKVF K T Y E K C 0 0 0 0 0 0 2 0 0 0 1 1 0 0 0 0 3 0 1 0 0 0 8 0 983.48114 CON__P02768-1;P02768 CON__P02768-1 376 383 ALB Serum albumin yes no 2 0.0013239 117.39 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 777560000 777560000 0 0 + 13916 44 14624 61171;61172;61173;61174;61175;61176;61177;61178;61179;61180 51519;51520;51521;51522;51523 51519 5 599020000 0 0 TYFPHFDLSHGSAQVK AEALERMFLSFPTTKTYFPHFDLSHGSAQV YFPHFDLSHGSAQVKGHGAKVAAALTKAVE K T Y V K G 1 0 0 1 0 1 0 1 2 0 1 1 0 2 1 2 1 0 1 1 0 0 16 0 1832.8846 P69905;CON__P01966 CON__P01966 42 57 HBA1 Hemoglobin subunit alpha no no 2;3;4 1.9168E-35 208.08 By MS/MS By MS/MS By MS/MS 7.38 2.65 3 1 1 1 5 6 4 9 9 16 7 16 4017900000 803640000 148320000 3066000000 + 13917 34;1082 14625 61181;61182;61183;61184;61185;61186;61187;61188;61189;61190;61191;61192;61193;61194;61195;61196;61197;61198;61199;61200;61201;61202;61203;61204;61205;61206;61207;61208;61209;61210;61211;61212;61213;61214;61215;61216;61217;61218;61219 51524;51525;51526;51527;51528;51529;51530;51531;51532;51533;51534;51535;51536;51537;51538;51539;51540;51541;51542;51543;51544;51545;51546;51547;51548;51549;51550;51551;51552;51553;51554;51555;51556;51557;51558;51559;51560;51561;51562;51563;51564 51533 41 739420000 379490000 1004200000 TYFYQLWYDQDYAR GGMDPESLLEGDDGKTYFYQLWYDQDYARF KTYFYQLWYDQDYARFESPPKTQPTEDNKF K T Y A R F 1 1 0 2 0 2 0 0 0 0 1 0 0 1 0 0 1 1 4 0 0 0 14 0 1930.8526 P26358 P26358 862 875 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00039715 147.72 By MS/MS 1.5 0.5 1 1 2 7223200 0 0 7223200 13918 667 14626 61220;61221 51565 51565 1 0 0 1607200 TYGEPESAGPSR GYNDDYYEESYFTTRTYGEPESAGPSRAVR TTRTYGEPESAGPSRAVRQSVTSFPDADAF R T Y S R A 1 1 0 0 0 0 2 2 0 0 0 0 0 0 2 2 1 0 1 0 0 0 12 0 1249.5575 P50402 P50402 104 115 EMD Emerin yes yes 2 9.8348E-18 188.04 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 42124000 0 7761100 34363000 13919 878 14627 61222;61223;61224 51566;51567;51568 51567 3 0 2686600 5252700 TYGESMLYLDGQR FTFMSEKEVPLVFPKTYGESMLYLDGQRHF PKTYGESMLYLDGQRHFNSMSGPATLRKDY K T Y Q R H 0 1 0 1 0 1 1 2 0 0 2 0 1 0 0 1 1 0 2 0 0 0 13 0 1531.6977 Q9Y305 Q9Y305 408 420 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 6.4422E-17 185.29 By MS/MS 4.5 0.5 1 1 2 62656000 0 0 62656000 13920 2256 14628 61225;61226 51569 51569 1 0 0 9138900 TYGHLYMQNSELFK LLENAEKSLNDMFVKTYGHLYMQNSELFKD KTYGHLYMQNSELFKDLFVELKRYYVVGNV K T Y F K D 0 0 1 0 0 1 1 1 1 0 2 1 1 1 0 1 1 0 2 0 0 0 14 0 1729.8134 O75487 O75487 127 140 GPC4 Glypican-4;Secreted glypican-4 yes yes 3 0.013027 60.178 By MS/MS 6 0 1 1 5560100 0 0 5560100 13921 265 14629 61227 51570 51570 1 0 0 831850 TYIQLLIR LGLQTKEEVSIEVLKTYIQLLIREKHTNLI VSIEVLKTYIQLLIREKHTNLIAFYTCHLP K T Y I R E 0 1 0 0 0 1 0 0 0 2 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1018.6175 P57740 P57740 575 582 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.00021438 138.62 By MS/MS 2.5 0.5 1 1 2 5332300 0 0 5332300 13922 956 14630 61228;61229 51571 51571 1 0 0 1164800 TYLFLQEYLDAIKK DAYELKIANKLFGEKTYLFLQEYLDAIKKF KTYLFLQEYLDAIKKFYQTSVESVDFANAP K T Y K K F 1 0 0 1 0 1 1 0 0 1 3 2 0 1 0 0 1 0 2 0 0 0 14 1 1743.9447 P29508 P29508 112 125 SERPINB3 Serpin B3 yes yes 3 0.007143 66.285 By MS/MS 8.5 0.5 1 1 2 4492900 4492900 0 0 13923 700 14631 61230;61231 51572 51572 1 3436700 0 0 TYLISSIPLQGAFNYK VLAVQTELKECMVVKTYLISSIPLQGAFNY YLISSIPLQGAFNYKYTACLCDDNPKTFYW K T Y Y K Y 1 0 1 0 0 1 0 1 0 2 2 1 0 1 1 2 1 0 2 0 0 0 16 0 1813.9614 P12273 P12273 70 85 PIP Prolactin-inducible protein yes yes 2;3 9.5246E-47 222.34 By MS/MS By MS/MS By MS/MS 5.68 2.92 3 3 2 2 2 4 3 3 3 3 19 3 6 746480000 694730000 6188800 45567000 13924 537 14632 61232;61233;61234;61235;61236;61237;61238;61239;61240;61241;61242;61243;61244;61245;61246;61247;61248;61249;61250;61251;61252;61253;61254;61255;61256;61257;61258;61259 51573;51574;51575;51576;51577;51578;51579;51580;51581;51582;51583;51584;51585;51586;51587;51588;51589;51590;51591;51592;51593;51594 51576 22 673500000 2766700 12168000 TYLTITDTQLVNSLLEK GDTPAPRRAVLETIRTYLTITDTQLVNSLL LTITDTQLVNSLLEKASEKVLDPASSDFTR R T Y E K A 0 0 1 1 0 1 1 0 0 1 4 1 0 0 0 1 4 0 1 1 0 0 17 0 1951.0514 Q5JTH9 Q5JTH9 719 735 RRP12 RRP12-like protein yes yes 2 4.7163E-09 166.6 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 6205900 0 2793700 3412100 13925 1438 14633 61260;61261;61262;61263 51595;51596;51597;51598 51596 4 0 1287900 751320 TYMDVMR FADGGKTPDPKMNARTYMDVMREQHLTKEE PDPKMNARTYMDVMREQHLTKEEREIRQQL R T Y M R E 0 1 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 1 0 0 7 0 914.39901 O75533 O75533 151 157 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.031954 90.986 By matching By MS/MS By MS/MS 2 0 3 1 1 1 13520000 1610900 5711200 6197900 13926 270 14634 61264;61265;61266 51599;51600 51599 2 1941000 2571800 1400600 TYMLAFDVNDEK GQEHFAHLLILRDTKTYMLAFDVNDEKNWG DTKTYMLAFDVNDEKNWGLSVYADKPETTK K T Y E K N 1 0 1 2 0 0 1 0 0 0 1 1 1 1 0 0 1 0 1 1 0 0 12 0 1444.6544 P02763 P02763 127 138 ORM1 Alpha-1-acid glycoprotein 1 yes yes 2 0.017583 86.344 By MS/MS 9 0 1 1 4484400 4484400 0 0 13927 394 14635 61267 51601 51601 1 2517100 0 0 TYNASITLQQQLK HLQDLMEGLTAKVFRTYNASITLQQQLKEL FRTYNASITLQQQLKELTAPDENIPAKILS R T Y L K E 1 0 1 0 0 3 0 0 0 1 2 1 0 0 0 1 2 0 1 0 0 0 13 0 1506.8042 P11387 P11387 591 603 TOP1 DNA topoisomerase 1 yes yes 2;3 8.4249E-05 154.24 By MS/MS By MS/MS By MS/MS 1.86 0.639 2 4 1 1 2 4 161690000 7077200 30926000 123690000 13928 523 14636 61268;61269;61270;61271;61272;61273;61274 51602;51603;51604;51605;51606;51607;51608 51603 7 8527200 13994000 26398000 TYNEPGSQVFK HAMAKDIDLLAKNAKTYNEPGSQVFKDANS KNAKTYNEPGSQVFKDANSIKKIFYMKKAE K T Y F K D 0 0 1 0 0 1 1 1 0 0 0 1 0 1 1 1 1 0 1 1 0 0 11 0 1268.6037 Q86U86 Q86U86 261 271 PBRM1 Protein polybromo-1 yes yes 2 0.042886 75.509 By MS/MS 1 0 1 1 14771000 0 0 14771000 13929 1545 14637 61275 51609 51609 1 0 0 3182700 TYQELLVNQNPIAQPLASR PDGPEAQAEACSGERTYQELLVNQNPIAQP LLVNQNPIAQPLASRRLTRKLYKCIKKAVK R T Y S R R 2 1 2 0 0 3 1 0 0 1 3 0 0 0 2 1 1 0 1 1 0 0 19 0 2154.1433 Q9NX24 Q9NX24 23 41 NHP2 H/ACA ribonucleoprotein complex subunit 2 yes yes 2;3 7.4749E-158 291.51 By MS/MS By MS/MS 7.5 0.5 4 4 4 4 165210000 0 52843000 112370000 13930 2084 14638 61276;61277;61278;61279;61280;61281;61282;61283 51610;51611;51612;51613;51614;51615;51616;51617 51615 8 0 29089000 19147000 TYQGSYGFR PAPSWPLSSSVPSQKTYQGSYGFRLGFLHS SVPSQKTYQGSYGFRLGFLHSGTAKSVTCT K T Y F R L 0 1 0 0 0 1 0 2 0 0 0 0 0 1 0 1 1 0 2 0 0 0 9 0 1077.488 P04637 P04637 102 110 TP53 Cellular tumor antigen p53 yes yes 2 9.9681E-05 142.64 By matching By MS/MS By MS/MS 4.43 0.904 1 3 2 1 1 2 4 120990000 5316200 33609000 82064000 13931 416 14639 61284;61285;61286;61287;61288;61289;61290 51618;51619;51620;51621 51620 4 4147600 9186200 12697000 TYSFLTAVQGGSFILSSSGSQLIR EDTYTEAFVDSGGDKTYSFLTAVQGGSFIL GGSFILSSSGSQLIRLIPESSGKIHQHILP K T Y I R L 1 1 0 0 0 2 0 3 0 2 3 0 0 2 0 6 2 0 1 1 0 0 24 0 2518.3068 Q8WUM0 Q8WUM0 208 231 NUP133 Nuclear pore complex protein Nup133 yes yes 3 0.00078303 53.355 By MS/MS 2 0 1 1 1164200 0 0 1164200 13932 1675 14640 61291 51622 51622 1 0 0 263090 TYSLGSALR SRPSSSRSYVTTSTRTYSLGSALRPSTSRS VTTSTRTYSLGSALRPSTSRSLYASSPGGV R T Y L R P 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 2 1 0 1 0 0 0 9 0 966.51345 P08670 P08670 37 45 VIM Vimentin yes yes 2 0.00038883 121.85 By matching By MS/MS By MS/MS 3.8 0.748 2 2 1 1 1 3 89704000 2842600 17316000 69545000 13933 476 14641 61292;61293;61294;61295;61296 51623;51624;51625 51624 3 3279700 5746700 11176000 TYSLGSALRPSTSR SRPSSSRSYVTTSTRTYSLGSALRPSTSRS RTYSLGSALRPSTSRSLYASSPGGVYATRS R T Y S R S 1 2 0 0 0 0 0 1 0 0 2 0 0 0 1 4 2 0 1 0 0 0 14 1 1494.7791 P08670 P08670 37 50 VIM Vimentin yes yes 2;3 1.1275E-07 163.99 By matching By MS/MS By MS/MS 4.82 2.4 5 4 5 11 6 5 6 3 2 2 3 19 27 6286300000 479090000 2142900000 3664300000 13934 476 14642 61297;61298;61299;61300;61301;61302;61303;61304;61305;61306;61307;61308;61309;61310;61311;61312;61313;61314;61315;61316;61317;61318;61319;61320;61321;61322;61323;61324;61325;61326;61327;61328;61329;61330;61331;61332;61333;61334;61335;61336;61337;61338;61339;61340;61341;61342;61343;61344;61345 51626;51627;51628;51629;51630;51631;51632;51633;51634;51635;51636;51637;51638;51639;51640;51641;51642;51643;51644;51645;51646;51647;51648;51649;51650;51651;51652;51653;51654;51655;51656;51657;51658;51659;51660;51661;51662;51663;51664;51665;51666;51667;51668;51669;51670;51671;51672 51644 47 386790000 714470000 681390000 TYSYLTPDLWK TLGNFAKATFDAISKTYSYLTPDLWKETVF AISKTYSYLTPDLWKETVFTKSPYQEFTDH K T Y W K E 0 0 0 1 0 0 0 0 0 0 2 1 0 0 1 1 2 1 2 0 0 0 11 0 1385.6867 P15880 P15880 247 257 RPS2 40S ribosomal protein S2 yes yes 2 6.1266E-05 142.92 By MS/MS By MS/MS By MS/MS 5.36 1.72 1 1 1 2 3 2 1 1 6 4 388400000 5066200 104300000 279030000 13935 571 14643 61346;61347;61348;61349;61350;61351;61352;61353;61354;61355;61356 51673;51674;51675;51676;51677;51678;51679;51680 51676 8 6745700 36611000 41896000 TYSYLTPDLWKETVFTK TLGNFAKATFDAISKTYSYLTPDLWKETVF SYLTPDLWKETVFTKSPYQEFTDHLVKTHT K T Y T K S 0 0 0 1 0 0 1 0 0 0 2 2 0 1 1 1 4 1 2 1 0 0 17 1 2091.0565 P15880 P15880 247 263 RPS2 40S ribosomal protein S2 yes yes 3 0.01129 53.779 By MS/MS 6 0 1 1 3697800 0 3697800 0 13936 571 14644 61357 51681 51681 1 0 1280000 0 TYTQLVR TPEKWDIITRKGGERTYTQLVRLIILDEIH ITRKGGERTYTQLVRLIILDEIHLLHDDRG R T Y V R L 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 2 0 1 1 0 0 7 0 879.48142 O75643 O75643 604 610 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.017096 107.74 By matching By MS/MS By MS/MS 1 0 3 1 1 1 62173000 2530300 31956000 27687000 13937 277 14645 61358;61359;61360 51682;51683 51682 2 2530300 15620000 5965500 TYVPALEQSADGHK NAQSQQYLYWDGERRTYVPALEQSADGHKE RTYVPALEQSADGHKETGAPSKEGKEKKEK R T Y H K E 2 0 0 1 0 1 1 1 1 0 1 1 0 0 1 1 1 0 1 1 0 0 14 0 1514.7365 P98175 P98175 614 627 RBM10 RNA-binding protein 10 yes yes 3 0.00070317 92.457 By MS/MS 2 0 1 1 8758200 0 0 8758200 13938 1117 14646 61361 51684 51684 1 0 0 1979200 TYVVTGNMGSNDK VLNVIEGPVFRPGSKTYVVTGNMGSNDKVG SKTYVVTGNMGSNDKVGDFVATDLDTGRPS K T Y D K V 0 0 2 1 0 0 0 2 0 0 0 1 1 0 0 1 2 0 1 2 0 0 13 0 1384.6293 Q02413 Q02413 391 403 DSG1 Desmoglein-1 yes yes 2 4.5898E-18 154.24 By MS/MS By MS/MS 5.91 3.03 1 1 1 1 1 1 1 1 1 2 10 1 48717000 46749000 0 1968500 13939 1146 14647 61362;61363;61364;61365;61366;61367;61368;61369;61370;61371;61372 51685;51686;51687;51688;51689;51690;51691;51692;51693;51694 51689 10 49361000 0 4305200 TYYMSGGLQPVPIVFR FSMQAIDQVINSAAKTYYMSGGLQPVPIVF YYMSGGLQPVPIVFRGPNGASAGVAAQHSQ K T Y F R G 0 1 0 0 0 1 0 2 0 1 1 0 1 1 2 1 1 0 2 2 0 0 16 0 1826.9389 P11177 P11177 130 145 PDHB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial yes yes 2 3.1454E-08 165.11 By matching By MS/MS By MS/MS 6 0 3 1 1 1 20476000 1027500 4206700 15242000 13940 518 14648 61373;61374;61375 51695;51696 51695 2 1368100 1456200 2280300 TYYYNTETK GAKSMWTEHKSPDGRTYYYNTETKQSTWEK KSPDGRTYYYNTETKQSTWEKPDDLKTPAE R T Y T K Q 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 3 0 3 0 0 0 9 0 1181.5241 O75400 O75400 156 164 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 5.7317E-05 147.19 By matching By MS/MS 2 0 2 1 1 4876000 2246500 2629500 0 13941 258 14649 61376;61377 51697 51697 1 2706700 1184100 0 VAAAGAFAQTLR THAMVNIPEEMLRVKVAAAGAFAQTLRRYT RVKVAAAGAFAQTLRRYTSLNHLAQAARAV K V A L R R 5 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 1 0 0 1 0 0 12 0 1174.6459 P22670 P22670 738 749 RFX1 MHC class II regulatory factor RFX1 yes yes 2 0.024128 82.008 By MS/MS 2 0 1 1 4415700 0 0 4415700 13942 633 14650 61378 51698 51698 1 0 0 997870 VAAAVPVIISR ARIKKIMQTDEEIGKVAAAVPVIISRALEL EIGKVAAAVPVIISRALELFLESLLKKACQ K V A S R A 3 1 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 3 0 0 11 0 1094.6812 Q14919 Q14919 30 40 DRAP1 Dr1-associated corepressor yes yes 2 0.00032823 129.63 By MS/MS 6.75 1.48 1 1 1 1 4 112810000 0 0 112810000 13943 1323 14651 61379;61380;61381;61382 51699;51700;51701 51700 3 0 0 19882000 VAAEDWK PSQGTTTFAVTSILRVAAEDWKKGDTFSCM FAVTSILRVAAEDWKKGDTFSCMVGHEALP R V A W K K 2 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 7 0 817.39702 P01876;P0DOX2;P01877 P01876 300 306 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region no no 2 0.055398 76.035 By MS/MS 9.5 0.5 1 1 2 16457000 16457000 0 0 13944 386;503 14652 61383;61384 51702 51702 1 16022000 0 0 VAAENQYGRGPFVETPK HFAKHLNEGNQYLFRVAAENQYGRGPFVET AENQYGRGPFVETPKPIKALDPLHPPGPPK R V A P K P 2 1 1 0 0 1 2 2 0 0 0 1 0 1 2 0 1 0 1 2 0 0 17 1 1861.9323 Q8WZ42 Q8WZ42 18310 18326 TTN Titin yes yes 2 0.0046739 96.229 By MS/MS 5 0 1 1 4127700 4127700 0 0 13945 1703 14653 61385 51703 51703 1 3306800 0 0 VAAETQSPSLFGSTK QHGNSGRNSESESNKVAAETQSPSLFGSTK VAAETQSPSLFGSTKLQQESTFLFHGNKTE K V A T K L 2 0 0 0 0 1 1 1 0 0 1 1 0 1 1 3 2 0 0 1 0 0 15 0 1521.7675 Q9UKX7 Q9UKX7 215 229 NUP50 Nuclear pore complex protein Nup50 yes yes 2 0.00028826 125.36 By MS/MS By matching 4.5 0.5 1 1 1 1 33561000 0 7079500 26481000 13946 2185 14654 61386;61387 51704 51704 1 0 2349400 3693700 VAAGAFQGLR PDLRYLFLNGNKLARVAAGAFQGLRQLDML NKLARVAAGAFQGLRQLDMLDLSNNSLASV R V A L R Q 3 1 0 0 0 1 0 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 10 0 988.54541 P02750 P02750 251 260 LRG1 Leucine-rich alpha-2-glycoprotein yes yes 2 0.00014161 143.56 By MS/MS 9.5 0.5 1 1 2 10036000 10036000 0 0 13947 393 14655 61388;61389 51705 51705 1 7316800 0 0 VAAGLQIK LSRVLANPGNSQVARVAAGLQIKNSLTSKD GNSQVARVAAGLQIKNSLTSKDPDIKAQYQ R V A I K N 2 0 0 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 798.49634 Q14974 Q14974 55 62 KPNB1 Importin subunit beta-1 yes yes 2 0.025152 80.294 By matching By MS/MS By MS/MS 2.33 0.471 2 1 1 1 1 20727000 3703400 5546900 11477000 13948 1325 14656 61390;61391;61392 51706;51707 51707 2 4462200 2497900 2226000 VAAHASLNPALFSMK LVPEEVIKKETDSLKVAAHASLNPALFSMK VAAHASLNPALFSMKMELAGSNTTASSPAR K V A M K M 4 0 1 0 0 0 0 0 1 0 2 1 1 1 1 2 0 0 0 1 0 0 15 0 1555.8181 Q9UIF9 Q9UIF9 1158 1172 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A yes yes 3 0.011982 56.599 By MS/MS 1 0 1 1 7428500 0 0 7428500 13949 2163 14657 61393 51708 51708 1 0 0 1600600 VAAIEALNDGELQK AEITEEVMDQANDKKVAAIEALNDGELQKA KVAAIEALNDGELQKAIDLFTDAIKLNPRL K V A Q K A 3 0 1 1 0 1 2 1 0 1 2 1 0 0 0 0 0 0 0 1 0 0 14 0 1469.7726 Q8IZP2;P50502 Q8IZP2 115 128 ST13P4;ST13 Putative protein FAM10A4;Hsc70-interacting protein yes no 2 0.00041472 133.89 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 27106000 0 4599800 22506000 13950 880 14658 61394;61395;61396 51709;51710 51710 2 0 1185700 3250800 VAALFPALRPGGFQAHYR EAAAGPGPCERLLSRVAALFPALRPGGFQA LFPALRPGGFQAHYRDEDGDLVAFSSDEEL R V A Y R D 4 2 0 0 0 1 0 2 1 0 2 0 0 2 2 0 0 0 1 1 0 0 18 1 1970.0639 Q13501 Q13501 51 68 SQSTM1 Sequestosome-1 yes yes 4 0.054317 39.531 By MS/MS 4 0 1 1 5608000 0 5608000 0 13951 1253 14659 61397 51711 51711 0 0 1861100 0 VAALQNLVK QVVCEATQCPDTRVRVAALQNLVKIMSLYY PDTRVRVAALQNLVKIMSLYYQYMETYMGP R V A V K I 2 0 1 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 954.58622 Q14974 Q14974 235 243 KPNB1 Importin subunit beta-1 yes yes 2 0.028639 77.674 By matching By matching By MS/MS 9.67 0.471 1 2 1 1 1 4843200 730490 717730 3395000 13952 1325 14660 61398;61399;61400 51712 51712 1 410030 3631100 7425200 VAAMSVAQR LPGPKRGVACTQPRRVAAMSVAQRVADEMD CTQPRRVAAMSVAQRVADEMDVMLGQEVGY R V A Q R V 3 1 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 0 9 0 931.49094 O43143 O43143 196 204 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.0012418 109.01 By matching By MS/MS 2.5 0.5 1 1 1 1 11066000 0 4615400 6450700 13953 186 14661 61401;61402 51713 51713 1 0 2078400 1251100 VAAPDVVVPTLDTVR PWQAKVPQIEVETHKVAAPDVVVPTLDTVR VAAPDVVVPTLDTVRHEALLYTWLAEHKPL K V A V R H 2 1 0 2 0 0 0 0 0 0 1 0 0 0 2 0 2 0 0 5 0 0 15 0 1550.8668 Q14204 Q14204 2562 2576 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.00028429 128.85 By MS/MS 1 0 1 1 6718800 0 6718800 0 13954 1292 14662 61403 51714 51714 1 0 3284100 0 VAAPEIVSGVSGESEQK LAHAIAGELDLPILKVAAPEIVSGVSGESE APEIVSGVSGESEQKLRELFEQAVSNAPCI K V A Q K L 2 0 0 0 0 1 3 2 0 1 0 1 0 0 1 3 0 0 0 3 0 0 17 0 1685.8472 O15381 O15381 329 345 NVL Nuclear valosin-containing protein-like yes yes 2 0.0011106 92.781 By MS/MS By matching 2.5 0.5 1 1 1 1 8256800 0 2672300 5584500 13955 180 14663 61404;61405 51715 51715 1 0 1203400 1083100 VAAPVGPVGPTPTVLPMGAPVPRPR QDMGQIGVRTPLGPRVAAPVGPVGPTPTVL TPTVLPMGAPVPRPRGPPPPPGDENREMDD R V A P R G 3 2 0 0 0 0 0 3 0 0 1 0 1 0 8 0 2 0 0 5 0 0 25 1 2432.3726 Q13435 Q13435 223 247 SF3B2 Splicing factor 3B subunit 2 yes yes 3 7.6518E-06 74.579 By MS/MS 2 0 1 1 5419700 0 5419700 0 13956 1248 14664 61406 51716 51716 1 0 2440600 0 VAASTFSSDSK MKTKELIGSMKINGRVAASTFSSDSKKVYA INGRVAASTFSSDSKKVYASSGDGEVYVWD R V A S K K 2 0 0 1 0 0 0 0 0 0 0 1 0 1 0 4 1 0 0 1 0 0 11 0 1098.5193 Q9Y5J1 Q9Y5J1 385 395 UTP18 U3 small nucleolar RNA-associated protein 18 homolog yes yes 2 1.2087E-09 168.8 By MS/MS 3 0 1 1 15002000 0 0 15002000 13957 2297 14665 61407 51717 51717 1 0 0 2909700 VAASVLNPYVK EKELLRVAQILKEPKVAASVLNPYVKRSIK KEPKVAASVLNPYVKRSIKVKSLNDITAKE K V A V K R 2 0 1 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 1 3 0 0 11 0 1159.6601 P48047 P48047 74 84 ATP5O ATP synthase subunit O, mitochondrial yes yes 2 0.0024969 107.69 By matching By MS/MS By MS/MS 7 0 3 1 1 1 28618000 1056800 15329000 12232000 13958 841 14666 61408;61409;61410 51718;51719 51718 2 2277700 8802300 2170500 VAAYDKLEK LQKDLEGLSQRHEEKVAAYDKLEKTKTRLQ QRHEEKVAAYDKLEKTKTRLQQELDDLLVD K V A E K T 2 0 0 1 0 0 1 0 0 0 1 2 0 0 0 0 0 0 1 1 0 0 9 1 1035.5601 P35579 P35579 1405 1413 MYH9 Myosin-9 yes yes 2 0.00293 121.58 By MS/MS 1.5 0.5 1 1 2 52446000 0 52446000 0 13959 752 14667 61411;61412 51720 51720 1 0 25448000 0 VADALTNAVAHVDDMPNALSALSDLHAHK DLSHGSAQVKGHGKKVADALTNAVAHVDDM MPNALSALSDLHAHKLRVDPVNFKLLSHCL K V A H K L 7 0 2 4 0 0 0 0 3 0 4 1 1 0 1 2 1 0 0 3 0 0 29 0 2995.4822 P69905 P69905 63 91 HBA1 Hemoglobin subunit alpha yes yes 4 2.8188E-05 50.857 By MS/MS 8.5 0.5 1 1 2 16845000 16845000 0 0 13960 1082 14668 61413;61414 51721;51722 51721 2 10177000 0 0 VADGGGAGGTFQPYLDTLR ______________________________ GGAGGTFQPYLDTLRQELQQTDPTLLSVVV R V A L R Q 2 1 0 2 0 1 0 5 0 0 2 0 0 1 1 0 2 0 1 1 0 0 19 0 1893.9221 Q9Y5M8 Q9Y5M8 9 27 SRPRB Signal recognition particle receptor subunit beta yes yes 2 6.5046E-06 106.13 By MS/MS 7 0 1 1 1506400 0 1506400 0 13961 2299 14669 61415 51723 51723 1 0 864990 0 VADISGDTQK NGKGLHSKKEVPIHRVADISGDTQKAKQFL VPIHRVADISGDTQKAKQFLPFLQRAGRSE R V A Q K A 1 0 0 2 0 1 0 1 0 1 0 1 0 0 0 1 1 0 0 1 0 0 10 0 1032.5088 Q7KZF4 Q7KZF4 504 513 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.0041356 99.802 By MS/MS By matching 2.5 0.5 1 1 1 1 5958500 0 4079800 1878800 13962 1518 14670 61416;61417 51724 51724 1 0 1837200 364390 VADLTEQYNEQYGAVR EGHWSKECPIDRSGRVADLTEQYNEQYGAV ADLTEQYNEQYGAVRTPYTMSYGDSLYYNN R V A V R T 2 1 1 1 0 2 2 1 0 0 1 0 0 0 0 0 1 0 2 2 0 0 16 0 1854.8748 Q9BWF3 Q9BWF3 183 198 RBM4 RNA-binding protein 4 yes yes 2 3.5986E-74 241.54 By matching By MS/MS By MS/MS 5.5 0.957 1 2 2 1 1 2 3 63129000 6662400 8800900 47666000 13963 1924 14671 61418;61419;61420;61421;61422;61423 51725;51726;51727;51728 51727 4 5197900 2753400 7086000 VADNAQQQYVR QSTLEASLELRGLARVADNAQQQYVRSRPA GLARVADNAQQQYVRSRPAPSPESIKRAKE R V A V R S 2 1 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 11 0 1290.6317 Q8TDD1 Q8TDD1 511 521 DDX54 ATP-dependent RNA helicase DDX54 yes yes 2 8.9967E-05 141.52 By MS/MS 2 0 1 1 3684800 0 3684800 0 13964 1661 14672 61424 51729 51729 1 0 1659300 0 VADNLAIQLAAVTEDKYEILQSVDDAAIVIK VLLCKEKPTTALLDKVADNLAIQLAAVTED YEILQSVDDAAIVIKNTKEPPLSLTIHLTS K V A I K N 6 0 1 4 0 2 2 0 0 4 3 2 0 0 0 1 1 0 1 4 0 0 31 1 3327.7814 Q12906 Q12906 128 158 ILF3 Interleukin enhancer-binding factor 3 yes yes 3;4 3.5762E-20 98.883 By MS/MS 2.33 0.471 2 1 3 34406000 0 0 34406000 13965 1211 14673 61425;61426;61427 51730;51731;51732;51733 51730 4 0 0 7751800 VADNSFDAK PFRRVREEEIEVDSRVADNSFDAKRGAAGD IEVDSRVADNSFDAKRGAAGDWGERANQVL R V A A K R 2 0 1 2 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 965.44543 Q14978 Q14978 639 647 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 2 0.0025346 103.56 By matching By MS/MS 2.5 0.5 1 1 1 1 14369000 0 1953500 12415000 13966 1326 14674 61428;61429 51734 51734 1 0 879680 2408000 VADWTGATYQDKR DMPYQPFSKGDRLGKVADWTGATYQDKRYT GKVADWTGATYQDKRYTNKYSSQFGGGSQY K V A K R Y 2 1 0 2 0 1 0 1 0 0 0 1 0 0 0 0 2 1 1 1 0 0 13 1 1509.7212 O15371 O15371 42 54 EIF3D Eukaryotic translation initiation factor 3 subunit D yes yes 2 0.011368 96.229 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 6464000 0 2891200 3572800 13967 178 14675 61430;61431 51735;51736 51736 2 0 959480 692950 VAEAALQIFK TFESLLACLKMDDEKVAEAALQIFKNTGSK MDDEKVAEAALQIFKNTGSKIEEDFPHIRS K V A F K N 3 0 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 0 0 1 0 0 10 0 1088.623 Q9NTI5 Q9NTI5 684 693 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2 0.0035882 101.64 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 56440000 0 8681300 47758000 13968 2053 14676 61432;61433;61434;61435 51737;51738;51739;51740 51739 4 0 4043500 10521000 VAEDLESEGLMAEEVQAVQQQEVYGMMPR KDLKANESRLKDINKVAEDLESEGLMAEEV VQAVQQQEVYGMMPRDETDSKTASPWKSAR K V A P R D 3 1 0 1 0 4 6 2 0 0 2 0 3 0 1 1 0 0 1 4 0 0 29 0 3265.4941 Q13813 Q13813 1153 1181 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 7.6593E-39 137.41 By MS/MS 1 0 1 1 9387000 0 0 9387000 13969 1268 14677 61436 51741 51741 1 0 0 2022600 VAEEEETSVK KAKIKVKVEEEEEEKVAEEEETSVKKKKKR EEEEKVAEEEETSVKKKKKRGKKKHIKEEP K V A V K K 1 0 0 0 0 0 4 0 0 0 0 1 0 0 0 1 1 0 0 2 0 0 10 0 1119.5295 Q9Y2X3 Q9Y2X3 476 485 NOP58 Nucleolar protein 58 yes yes 2 0.00061823 115.7 By MS/MS 4.67 1.7 1 1 1 3 7255400 0 0 7255400 13970 2254 14678 61437;61438;61439 51742;51743;51744 51742 3 0 0 1372500 VAEELALEQAK GAYGASVSDEELKRRVAEELALEQAKKESE LKRRVAEELALEQAKKESEDQKRLKQAKEL R V A A K K 3 0 0 0 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 11 0 1199.6398 Q9NX63 Q9NX63 66 76 CHCHD3 MICOS complex subunit MIC19 yes yes 2 0.00027084 134.25 By matching By matching By MS/MS 6.67 0.471 1 2 1 1 1 36237000 9875600 1719400 24642000 13971 2087 14679 61440;61441;61442 51745 51745 1 13149000 987270 4372600 VAEETIKDYFEAR LVYDLLKNHLETLSRVAEETIKDYFEARLA SRVAEETIKDYFEARLALLEPVFPIACHRL R V A A R L 2 1 0 1 0 0 3 0 0 1 0 1 0 1 0 0 1 0 1 1 0 0 13 1 1569.7675 Q99549 Q99549 729 741 MPHOSPH8 M-phase phosphoprotein 8 yes yes 2;3 0.0021064 131.43 By MS/MS 2 0 2 2 12959000 0 0 12959000 13972 1849 14680 61443;61444 51746;51747 51746 2 0 0 2928500 VAEITELILK LKDQVLRCSKIAGVKVAEITELILKALEND IAGVKVAEITELILKALENDQKVRKEGGKF K V A L K A 1 0 0 0 0 0 2 0 0 2 2 1 0 0 0 0 1 0 0 1 0 0 10 0 1127.6802 Q06265 Q06265 258 267 EXOSC9 Exosome complex component RRP45 yes yes 2 0.045505 73.985 By MS/MS 4 0.816 1 1 1 3 12176000 0 0 12176000 13973 1169 14681 61445;61446;61447 51748;51749 51748 2 0 0 2100900 VAEQAANDLR DDVGKSVHELERACRVAEQAANDLRAQVTE ERACRVAEQAANDLRAQVTELEDELTAAED R V A L R A 3 1 1 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 1085.5465 Q7Z406 Q7Z406 1553 1562 MYH14 Myosin-14 yes yes 2 0.0002425 140.83 By MS/MS 1 0 1 1 5316800 0 5316800 0 13974 1531 14682 61448 51750 51750 1 0 2598800 0 VAESTQVLELPFK SVLMMYQESKFRYRRVAESTQVLELPFKGD RRVAESTQVLELPFKGDDITMVLILPKLEK R V A F K G 1 0 0 0 0 1 2 0 0 0 2 1 0 1 1 1 1 0 0 2 0 0 13 0 1459.7922 CON__P41361 CON__P41361 296 308 yes yes 2 4.8905E-08 113.63 By MS/MS 7.33 3.09 1 1 1 3 8331000 0 0 8331000 + 13975 67 14683 61449;61450;61451 51751;51752 51751 2 0 0 12370000 VAFDPEQKPLHGVLK KTDKSILVSPTGPSRVAFDPEQKPLHGVLK VAFDPEQKPLHGVLKTPTSSPASSPLVAKK R V A L K T 1 0 0 1 0 1 1 1 1 0 2 2 0 1 2 0 0 0 0 2 0 0 15 1 1676.925 Q14684 Q14684 713 727 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 3;4 0.041315 44.436 By MS/MS 2.5 0.957 1 2 2 1 6 60343000 0 0 60343000 13976 1313 14684 61452;61453;61454;61455;61456;61457 51753;51754;51755;51756 51755 4 0 0 12295000 VAFHPARPFLLVASQR RSQSPFRRSHGQVQRVAFHPARPFLLVASQ AFHPARPFLLVASQRSVRLYHLLRQELTKK R V A Q R S 3 2 0 0 0 1 0 0 1 0 2 0 0 2 2 1 0 0 0 2 0 0 16 1 1808.021 Q14137 Q14137 585 600 BOP1 Ribosome biogenesis protein BOP1 yes yes 4 0.00030308 91.969 By MS/MS 2 0 1 1 6588000 0 6588000 0 13977 1283 14685 61458 51757 51757 1 0 2966700 0 VAFITGGGTGLGK PLQKAMLPPNSFQGKVAFITGGGTGLGKGM GKVAFITGGGTGLGKGMTTLLSSLGAQCVI K V A G K G 1 0 0 0 0 0 0 5 0 1 1 1 0 1 0 0 2 0 0 1 0 0 13 0 1176.6503 Q16698 Q16698 61 73 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes yes 2 0.0046557 101.39 By MS/MS By MS/MS 6 0 2 1 1 19638000 0 8646300 10992000 13978 1398 14686 61459;61460 51758;51759 51758 2 0 2993000 1644500 VAFVNFR VKISHLSGSGSGDERVAFVNFRRPEDARAA GSGSGDERVAFVNFRRPEDARAAKHARGRL R V A F R R 1 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 851.46537 Q96T37 Q96T37 217 223 RBM15 Putative RNA-binding protein 15 yes yes 2 0.0016565 148.12 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 18558000 0 3887500 14670000 13979 1838 14687 61461;61462;61463;61464 51760;51761 51760 2 0 1750600 3105700 VAGDCLDEK WLDLKDNPLDPVLAKVAGDCLDEKQCKQCA DPVLAKVAGDCLDEKQCKQCANKVLQHMKA K V A E K Q 1 0 0 2 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1005.4437 Q96AG4 Q96AG4 127 135 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2 0.00069532 114.28 By MS/MS 6 0 1 1 7001200 0 0 7001200 13980 1751 14688 61465 51762 51762 1 0 0 1047400 VAGEDMLVWR FLASNESRIQTESHRVAGEDMLVWRWTKPS TESHRVAGEDMLVWRWTKPSSFSDSER___ R V A W R W 1 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 1 0 2 0 0 10 0 1174.5805 Q8NC56 Q8NC56 482 491 LEMD2 LEM domain-containing protein 2 yes yes 2 0.00011152 145.63 By matching By MS/MS By MS/MS 4.6 0.8 3 1 1 1 1 3 61200000 2167700 7007000 52025000 13981 1631 14689 61466;61467;61468;61469;61470 51763;51764 51763 2 1691200 2325400 8343000 VAGHPNIVINNAAGNFISPTER RDPDMVQNTVSELIKVAGHPNIVINNAAGN VINNAAGNFISPTERLSPNAWKTITDIVLN K V A E R L 3 1 4 0 0 0 1 2 1 3 0 0 0 1 2 1 1 0 0 2 0 0 22 0 2290.1818 Q16698 Q16698 134 155 DECR1 2,4-dienoyl-CoA reductase, mitochondrial yes yes 3 1.5557E-19 124.08 By MS/MS By matching 6 0 2 1 1 27237000 0 16165000 11072000 13982 1398 14690 61471;61472 51765 51765 1 0 5595600 1656500 VAGHSLGYGFVNYVTAK SSIGEVESAKLIRDKVAGHSLGYGFVNYVT GHSLGYGFVNYVTAKDAERAINTLNGLRLQ K V A A K D 2 0 1 0 0 0 0 3 1 0 1 1 0 1 0 1 1 0 2 3 0 0 17 0 1781.9101 Q15717 Q15717 56 72 ELAVL1 ELAV-like protein 1 yes yes 2;3 3.8004E-28 205.87 By MS/MS By MS/MS 5.5 0.764 1 1 4 3 3 231400000 0 104410000 126990000 13983 1380 14691 61473;61474;61475;61476;61477;61478 51766;51767;51768;51769;51770 51766 5 0 36094000 18922000 VAGIESHSELQISR ECEKARQELQEAKEKVAGIESHSELQISRQ KVAGIESHSELQISRQQNELAELHANLARA K V A S R Q 1 1 0 0 0 1 2 1 1 2 1 0 0 0 0 3 0 0 0 1 0 0 14 0 1524.7896 Q14980 Q14980 856 869 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 2.2379E-73 248.42 By MS/MS 1 0 1 1 26670000 0 0 26670000 13984 1327 14692 61479 51771 51771 1 0 0 5746400 VAGLGTPSFAPYEANVDFEIR RLVAPARRLLEQGIRVAGLGTPSFAPYEAN PSFAPYEANVDFEIRFMVDTDIVGCNWLEL R V A I R F 3 1 1 1 0 0 2 2 0 1 1 0 0 2 2 1 1 0 1 2 0 0 21 0 2252.1113 P28340 P28340 233 253 POLD1 DNA polymerase delta catalytic subunit yes yes 2 1.6301E-10 110.77 By MS/MS 2 0 1 1 2574900 0 0 2574900 13985 691 14693 61480 51772 51772 1 0 0 581870 VAGPNGYAILLAVPGSSDSR RLDQPKLDEVTRRIKVAGPNGYAILLAVPG GYAILLAVPGSSDSRSSSSSAASDTATSTQ K V A S R S 3 1 1 1 0 0 0 3 0 1 2 0 0 0 2 3 0 0 1 2 0 0 20 0 1943.0112 Q96T37 Q96T37 851 870 RBM15 Putative RNA-binding protein 15 yes yes 2 0.00074177 73.887 By MS/MS 2 0 1 1 2208900 0 2208900 0 13986 1838 14694 61481 51773 51773 1 0 994710 0 VAGQDGSVVQFK TEEVKTENNNHINLKVAGQDGSVVQFKIKR NLKVAGQDGSVVQFKIKRQTPLSKLMKAYC K V A F K I 1 0 0 1 0 2 0 2 0 0 0 1 0 1 0 1 0 0 0 3 0 0 12 0 1233.6354 Q6EEV6;P61956;P55854 Q6EEV6 22 33 SUMO4;SUMO2;SUMO3 Small ubiquitin-related modifier 4;Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3 yes no 2 5.665E-06 160.59 By MS/MS By MS/MS By matching 8.25 0.433 3 1 1 1 2 29205000 0 6247700 22958000 13987 946 14695 61482;61483;61484;61485 51774;51775 51775 2 0 2842500 4236600 VAGSVTELIQAAEAMK PSPELKQQLTGHSKRVAGSVTELIQAAEAM AGSVTELIQAAEAMKGTEWVDPEDPTVIAE R V A M K G 4 0 0 0 0 1 2 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 16 0 1616.8444 Q9Y490 Q9Y490 2276 2291 TLN1 Talin-1 yes yes 2 1.1382E-08 94.191 By MS/MS By MS/MS 1 0 2 1 1 0 0 0 0 13988 2284 14696 61486;61487 51776;51777 51777 2 0 0 0 VAGVVAPTLPR KLIDSWMGKGAAKLRVAGVVAPTLPREDLE AKLRVAGVVAPTLPREDLEKIIAHFLIQQY R V A P R E 2 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 0 0 3 0 0 11 0 1078.6499 P46063 P46063 529 539 RECQL ATP-dependent DNA helicase Q1 yes yes 2 2.46E-13 175.51 By MS/MS By MS/MS 4.8 1.83 2 1 2 2 3 76624000 0 23169000 53455000 13989 823 14697 61488;61489;61490;61491;61492 51778;51779;51780;51781;51782 51779 5 0 9986200 10271000 VAHPIRPKPPSATSIPAILK INNQPLSEEQLIDIKVAHPIRPKPPSATSI RPKPPSATSIPAILKALQDEWDAVMLHSFT K V A L K A 3 1 0 0 0 0 0 0 1 3 1 2 0 0 5 2 1 0 0 1 0 0 20 2 2092.2521 Q9UMS4 Q9UMS4 57 76 PRPF19 Pre-mRNA-processing factor 19 yes yes 3;4;5 1.957E-11 119.38 By MS/MS By MS/MS 4.62 1.22 1 4 1 1 1 4 4 374540000 0 256810000 117730000 13990 2199 14698 61493;61494;61495;61496;61497;61498;61499;61500 51783;51784;51785;51786;51787;51788;51789 51784 7 0 85020000 19398000 VAHSDKPGSTSTASFR EENRHLRDEGLRLRKVAHSDKPGSTSTASF AHSDKPGSTSTASFRDNVTSPLPSLLVVIA K V A F R D 2 1 0 1 0 0 0 1 1 0 0 1 0 1 1 4 2 0 0 1 0 0 16 1 1646.8012 Q9P0L0 Q9P0L0 206 221 VAPA Vesicle-associated membrane protein-associated protein A yes yes 3 1.9847E-05 106.19 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 10962000 0 2055200 8907100 13991 2116 14699 61501;61502;61503;61504 51790;51791;51792;51793 51792 4 0 804540 1391300 VAHSFNCTPIEGMLSHQLK KPGNQNTQVTEAWNKVAHSFNCTPIEGMLS FNCTPIEGMLSHQLKQHVIDGEKTIIQNPT K V A L K Q 1 0 1 0 1 1 1 1 2 1 2 1 1 1 1 2 1 0 0 1 0 0 19 0 2168.0507 Q9UQ80 Q9UQ80 173 191 PA2G4 Proliferation-associated protein 2G4 yes yes 4 0.011941 44.816 By MS/MS 5 0 1 1 22537000 0 0 22537000 13992 2220 14700 61505 51794 51794 1 0 0 3143600 VAIAENLLDVIK SQKVDTLPYVPEPIKVAIAENLLDVIKDTR PIKVAIAENLLDVIKDTRSKEITSDTMEQS K V A I K D 2 0 1 1 0 0 1 0 0 2 2 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 Q8WYP5 Q8WYP5 1666 1677 AHCTF1 Protein ELYS yes yes 2 0.067067 68.626 By MS/MS 2 0.816 1 1 1 3 6687000 0 0 6687000 13993 1702 14701 61506;61507;61508 51795 51795 1 0 0 1426900 VAIDNTNPDAASR RCVTTCETALKQGKRVAIDNTNPDAASRAR KRVAIDNTNPDAASRARYVQCARAAGVPCR R V A S R A 3 1 2 2 0 0 0 0 0 1 0 0 0 0 1 1 1 0 0 1 0 0 13 0 1342.6477 Q96T60 Q96T60 419 431 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2 0.00047083 121.36 By MS/MS By MS/MS 3.25 0.829 1 1 2 2 2 20459000 0 7713200 12746000 13994 1840 14702 61509;61510;61511;61512 51796;51797 51797 2 0 3067000 2247500 VAIHYINPPNPAK QNKPTGFALGSIEGRVAIHYINPPNPAKDN GRVAIHYINPPNPAKDNFTFKCHRSNGTNT R V A A K D 2 0 2 0 0 0 0 0 1 2 0 1 0 0 3 0 0 0 1 1 0 0 13 0 1432.7827 P78406 P78406 240 252 RAE1 mRNA export factor yes yes 2;3 0.0018213 108.3 By MS/MS By MS/MS 5 0 3 1 2 49466000 0 5037300 44429000 13995 1087 14703 61513;61514;61515 51798;51799;51800;51801 51800 4 0 1298500 6197000 VALEDDGFR ISEAAKEPAKAKVQKVALEDDGFRLFFTSV KAKVQKVALEDDGFRLFFTSVPGGREKEES K V A F R L 1 1 0 2 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1020.4876 Q96C57 Q96C57 115 123 C12orf43 Uncharacterized protein C12orf43 yes yes 2 0.00040447 120.46 By matching By MS/MS 6 0 2 1 1 12900000 7412200 0 5487700 13996 1759 14704 61516;61517 51802 51802 1 9869400 0 821010 VALLDVFR SQKVELSESRLKAFKVALLDVFREAHAQSI SRLKAFKVALLDVFREAHAQSIGMNRLTES K V A F R E 1 1 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 2 0 0 8 0 931.5491 P25205 P25205 749 756 MCM3 DNA replication licensing factor MCM3 yes yes 2 4.8888E-06 158.08 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 12430000 0 3068600 9361100 13997 655 14705 61518;61519;61520;61521 51803;51804;51805 51805 3 0 1381800 1953200 VALQDLQTNSK QVTRAVLGDDPQLMKVALQDLQTNSKIGAL QLMKVALQDLQTNSKIGALLPYFVYVVSGV K V A S K I 1 0 1 1 0 2 0 0 0 0 2 1 0 0 0 1 1 0 0 1 0 0 11 0 1215.6459 Q9Y6J9 Q9Y6J9 178 188 TAF6L TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L yes yes 2 0.003954 102.06 By MS/MS By MS/MS 3 0 2 1 1 4565300 0 0 4565300 13998 2312 14706 61522;61523 51806;51807 51806 2 0 0 885460 VALSSETEVALAR ANDIISSTEISSAEKVALSSETEVALARDM EKVALSSETEVALARDMTLPPETNVILTKD K V A A R D 3 1 0 0 0 0 2 0 0 0 2 0 0 0 0 2 1 0 0 2 0 0 13 0 1344.7249 P27816 P27816 436 448 MAP4 Microtubule-associated protein 4 yes yes 2 5.3968E-05 157.75 By MS/MS 1.5 0.5 1 1 2 39916000 0 0 39916000 13999 683 14707 61524;61525 51808;51809 51809 2 0 0 8794000 VALTGLTVAEYFR LVYGQMNEPPGARARVALTGLTVAEYFRDQ ARVALTGLTVAEYFRDQEGQDVLLFIDNIF R V A F R D 2 1 0 0 0 0 1 1 0 0 2 0 0 1 0 0 2 0 1 2 0 0 13 0 1438.782 P06576 P06576 282 294 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 2.0496E-35 180.07 By MS/MS By MS/MS By MS/MS 5.12 1.36 1 2 2 1 2 1 2 5 16214000 3114500 2009600 11090000 14000 444 14708 61526;61527;61528;61529;61530;61531;61532;61533 51810;51811;51812;51813;51814;51815 51814 6 2429900 549060 1819200 VALVYGQMNEPPGAR MIESGVINLKDATSKVALVYGQMNEPPGAR VALVYGQMNEPPGARARVALTGLTVAEYFR K V A A R A 2 1 1 0 0 1 1 2 0 0 1 0 1 0 2 0 0 0 1 2 0 0 15 0 1600.8032 P06576 P06576 265 279 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 0.0003481 118.28 By matching By MS/MS By MS/MS 3.67 0.471 1 2 1 1 1 26788000 12347000 3313600 11128000 14001 444 14709 61534;61535;61536 51816;51817 51816 2 14246000 1099700 1817500 VAMFLTDSNNIK YGLPPTAGWGMGIDRVAMFLTDSNNIKEVL IDRVAMFLTDSNNIKEVLLFPAMKPEDKKE R V A I K E 1 0 2 1 0 0 0 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 12 0 1351.6806 Q15046 Q15046 554 565 KARS Lysine--tRNA ligase yes yes 2 0.00095098 118.71 By MS/MS 3 0 1 1 5250600 0 5250600 0 14002 1336 14710 61537 51818 51818 1 0 2238300 0 VAMVNGVSMDNVEHAFAVQQLR LKGGPAEGQLQENDRVAMVNGVSMDNVEHA SMDNVEHAFAVQQLRKSGKNAKITIRRKKK R V A L R K 3 1 2 1 0 2 1 1 1 0 1 0 2 1 0 1 0 0 0 5 0 0 22 0 2414.1835 Q07157 Q07157 75 96 TJP1 Tight junction protein ZO-1 yes yes 3 0.00016307 69.081 By MS/MS 1 0 1 1 4694800 0 0 4694800 14003 1177 14711 61538 51819 51819 1 0 0 1011600 VANFSNMDEDDIELEPER PGPLTVGDELLSQFKVANFSNMDEDDIELE FSNMDEDDIELEPERNSKNWEEIIPEDQRR K V A E R N 1 1 2 3 0 0 4 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 18 0 2121.9161 O14646 O14646 1021 1038 CHD1 Chromodomain-helicase-DNA-binding protein 1 yes yes 2 3.11E-10 162.93 By MS/MS 1 0 1 1 3543300 0 0 3543300 14004 141 14712 61539 51820 51820 1 0 0 763450 VANPSGNLTETYVQDR ARALTQTGGPHVKARVANPSGNLTETYVQD ANPSGNLTETYVQDRGDGMYKVEYTPYEEG R V A D R G 1 1 2 1 0 1 1 1 0 0 1 0 0 0 1 1 2 0 1 2 0 0 16 0 1762.8486 P21333 P21333 1297 1312 FLNA Filamin-A yes yes 2 2.1795E-26 202.61 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 88359000 0 42210000 46149000 14005 623 14713 61540;61541;61542;61543;61544 51821;51822;51823 51823 3 0 20478000 9836400 VANTSTQTMGPR RPASSQVPRVMSTQRVANTSTQTMGPRPAA TQRVANTSTQTMGPRPAAAAAAATPAVRTV R V A P R P 1 1 1 0 0 1 0 1 0 0 0 0 1 0 1 1 3 0 0 1 0 0 12 0 1261.6085 P11940 P11940 482 493 PABPC1 Polyadenylate-binding protein 1 yes yes 2 6.4176E-11 125.97 By MS/MS 3 0 1 1 0 0 0 0 14006 530 14714 61545 51824 51824 1 0 0 0 VANTSTQTMGPRPAAAAAAATPAVR RPASSQVPRVMSTQRVANTSTQTMGPRPAA PRPAAAAAAATPAVRTVPQYKYAAGVRNPQ R V A V R T 9 2 1 0 0 1 0 1 0 0 0 0 1 0 3 1 4 0 0 2 0 0 25 1 2380.2281 P11940 P11940 482 506 PABPC1 Polyadenylate-binding protein 1 yes yes 3 6.0864E-30 157.88 By MS/MS 3 0 2 2 11886000 0 11886000 0 14007 530 14715;14716 61546;61547 51825;51826 51826 234 2 0 5067100 0 VANVELYYR TDAWKEGQFKDIITKVANVELYYRAIQFYL KDIITKVANVELYYRAIQFYLEFKPLLLND K V A Y R A 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 9 0 1125.5819 Q00610 Q00610 1398 1406 CLTC Clathrin heavy chain 1 yes yes 2 2.6724E-18 162.5 By MS/MS By MS/MS 3.29 2.91 2 2 1 1 1 3 4 169120000 0 52359000 116760000 14008 1125 14717 61548;61549;61550;61551;61552;61553;61554 51827;51828;51829;51830;51831;51832;51833 51832 7 0 24650000 30634000 VANVPNTSLLVNIPQPTPASLK VQIQGQRIIQQGLIRVANVPNTSLLVNIPQ SLLVNIPQPTPASLKGTTATSAQANSTPTS R V A L K G 2 0 3 0 0 1 0 0 0 1 3 1 0 0 4 2 2 0 0 3 0 0 22 0 2272.2791 Q86YP4 Q86YP4 294 315 GATAD2A Transcriptional repressor p66-alpha yes yes 2 2.1271E-06 84.753 By MS/MS 3 0 1 1 1036400 0 1036400 0 14009 1563 14718 61555 51834 51834 1 0 441820 0 VANVSAAEDSVSQR SMIQQLATYCARDVRVANVSAAEDSVSQRA RVANVSAAEDSVSQRAVLMEKPDVVVGTPS R V A Q R A 3 1 1 1 0 1 1 0 0 0 0 0 0 0 0 3 0 0 0 3 0 0 14 0 1431.6954 Q9NY93 Q9NY93 115 128 DDX56 Probable ATP-dependent RNA helicase DDX56 yes yes 2 7.1407E-05 158.34 By MS/MS 4 0 1 1 19893000 0 19893000 0 14010 2095 14719 61556 51835 51835 1 0 6601700 0 VANVSLLALYK HAVGDIPGVRFKVVKVANVSLLALYKGKKE KVVKVANVSLLALYKGKKERPRS_______ K V A Y K G 2 0 1 0 0 0 0 0 0 0 3 1 0 0 0 1 0 0 1 2 0 0 11 0 1189.7071 P62266 P62266 125 135 RPS23 40S ribosomal protein S23 yes yes 2 0.00043772 120.12 By MS/MS By MS/MS By MS/MS 7.14 2.07 1 1 1 2 2 3 2 2 1 8 5 721080000 6832200 193840000 520410000 14011 1013 14720 61557;61558;61559;61560;61561;61562;61563;61564;61565;61566;61567;61568;61569;61570 51836;51837;51838;51839;51840;51841;51842;51843;51844;51845;51846;51847;51848;51849 51840 14 5865700 113350000 115410000 VAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR GRITKKDIDSFVPSKVAPAPAAVVPPTGPG VPTGVFTDIPISNIRRVIAQRLMQSKQTIP K V A I R R 5 1 1 1 0 0 0 3 0 3 0 0 1 1 8 1 3 0 0 5 0 0 33 0 3208.7318 P10515 P10515 397 429 DLAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial yes yes 3 1.6469E-05 46.149 By MS/MS 3.5 0.5 1 1 2 3647700 0 3647700 0 14012 510 14721 61571;61572 51850 51850 1 0 1381000 0 VAPAPAVVK ______________________________ KAKGKKVAPAPAVVKKQEAKKVVNPLFEKR K V A V K K 3 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 3 0 0 9 0 850.52764 P62424 P62424 12 20 RPL7A 60S ribosomal protein L7a yes yes 2 0.006556 94.262 By MS/MS By MS/MS 6 0 2 1 1 64060000 0 38250000 25810000 14013 1026 14722 61573;61574 51851;51852 51851 2 0 13241000 3861400 VAPAQPSEEGPGR SSDTEQQSPTSGGGKVAPAQPSEEGPGRKD GKVAPAQPSEEGPGRKDENKVDGMNAPKGQ K V A G R K 2 1 0 0 0 1 2 2 0 0 0 0 0 0 3 1 0 0 0 1 0 0 13 0 1293.6313 P23588 P23588 512 524 EIF4B Eukaryotic translation initiation factor 4B yes yes 2 0.0011244 113.15 By MS/MS 3 0 1 1 5358500 0 0 5358500 14014 646 14723 61575 51853 51853 1 0 0 1039300 VAPDEHPILLTEAPLNPK DMEKIWYHTFYNELRVAPDEHPILLTEAPL DEHPILLTEAPLNPKINREKMTQIMFEAFN R V A P K I 2 0 1 1 0 0 2 0 1 1 3 1 0 0 4 0 1 0 0 1 0 0 18 0 1953.0571 Q562R1 Q562R1 97 114 ACTBL2 Beta-actin-like protein 2 yes yes 3 0.011805 47.568 By MS/MS 9 0 1 1 34237000 0 0 34237000 14015 1430 14724 61576 51854 51854 1 0 0 10937000 VAPEEHPILLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPILLTEAPL EEHPILLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 1 3 1 0 0 4 0 1 0 0 1 0 0 18 0 1967.0728 P0CG38;P0CG39;Q6S8J3;Q9BYX7 Q6S8J3 796 813 POTEI;POTEJ;POTEE;POTEKP POTE ankyrin domain family member I;POTE ankyrin domain family member J;POTE ankyrin domain family member E;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed no no 2;3 3.5452E-08 113.77 By matching By MS/MS By MS/MS 4.67 1.25 1 1 1 2 12 4 1 13 7 358780000 1457000 231490000 125840000 14016 1501;499 14725 61577;61578;61579;61580;61581;61582;61583;61584;61585;61586;61587;61588;61589;61590;61591;61592;61593;61594;61595;61596;61597 51855;51856;51857;51858;51859;51860;51861;51862;51863;51864;51865;51866;51867;51868 51857 14 1167200 64893000 17569000 VAPEEHPTLLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPTLLTEAPL EEHPTLLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 0 3 1 0 0 4 0 2 0 0 1 0 0 18 0 1955.0364 P68032;P63267;P68133;P62736 P68032 98 115 ACTC1;ACTG2;ACTA1;ACTA2 Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle yes no 3 0.0020903 64.454 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 37477000 0 24661000 12816000 14017 1075 14726 61598;61599;61600 51869;51870 51870 2 0 6666700 1787600 VAPEEHPVLLTEAPLNPK DMEKIWHHTFYNELRVAPEEHPVLLTEAPL EEHPVLLTEAPLNPKANREKMTQIMFETFN R V A P K A 2 0 1 0 0 0 3 0 1 0 3 1 0 0 4 0 1 0 0 2 0 0 18 0 1953.0571 P60709;P63261 P60709 96 113 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3;4 1.4245E-114 265.95 By MS/MS By MS/MS By MS/MS 5.24 2.58 3 4 3 5 5 5 4 4 1 3 4 15 18 7236800000 132600000 4340800000 2763400000 14018 966;1069 14727 61601;61602;61603;61604;61605;61606;61607;61608;61609;61610;61611;61612;61613;61614;61615;61616;61617;61618;61619;61620;61621;61622;61623;61624;61625;61626;61627;61628;61629;61630;61631;61632;61633;61634;61635;61636;61637 51871;51872;51873;51874;51875;51876;51877;51878;51879;51880;51881;51882;51883;51884;51885;51886;51887;51888;51889;51890;51891;51892;51893;51894;51895;51896;51897;51898;51899;51900;51901;51902;51903;51904;51905;51906;51907;51908;51909;51910;51911;51912;51913;51914;51915;51916;51917;51918;51919;51920;51921;51922;51923;51924;51925;51926;51927 51914 57 117590000 1357300000 476920000 VAPEEHPVLLTEAPLNPKANR DMEKIWHHTFYNELRVAPEEHPVLLTEAPL PVLLTEAPLNPKANREKMTQIMFETFNTPA R V A N R E 3 1 2 0 0 0 3 0 1 0 3 1 0 0 4 0 1 0 0 2 0 0 21 1 2294.2383 P60709;P63261 P60709 96 116 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 3 9.4734E-06 80.142 By MS/MS 5 0 1 1 5147200 0 5147200 0 14019 966;1069 14728 61638 51928 51928 1 0 1326800 0 VAPLFLVR KKLNTSTKNVPGKMKVAPLFLVRKAQKAAD NVPGKMKVAPLFLVRKAQKAADPVPSFDES K V A V R K 1 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 0 2 0 0 8 0 913.57492 Q96QE3 Q96QE3 794 801 ATAD5 ATPase family AAA domain-containing protein 5 yes yes 2 0.0013014 117.7 By MS/MS 1 0 1 1 2464100 0 0 2464100 14020 1825 14729 61639 51929 51929 1 0 0 530930 VAPLGEEFR FQKKWHEEVEIYRQKVAPLGEEFREGARQK EIYRQKVAPLGEEFREGARQKVQELQDKLS K V A F R E 1 1 0 0 0 0 2 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 9 0 1016.5291 CON__P15497 CON__P15497 142 150 yes yes 2 1.2588E-23 191.63 By MS/MS By MS/MS By MS/MS 8.25 1.3 1 3 3 2 3 4 3 5 1176600000 375040000 52912000 748680000 + 14021 59 14730 61640;61641;61642;61643;61644;61645;61646;61647;61648;61649;61650;61651 51930;51931;51932;51933;51934;51935;51936;51937;51938;51939;51940;51941;51942;51943;51944;51945;51946 51941 17 628990000 125330000 303120000 VAPLGEEFREGAR FQKKWHEEVEIYRQKVAPLGEEFREGARQK QKVAPLGEEFREGARQKVQELQDKLSPLAQ K V A A R Q 2 2 0 0 0 0 3 2 0 0 1 0 0 1 1 0 0 0 0 1 0 0 13 1 1429.7314 CON__P15497 CON__P15497 142 154 yes yes 3 0.0013176 98.368 By MS/MS 8.5 1.5 1 1 2 20433000 20433000 0 0 + 14022 59 14731 61652;61653 51947;51948 51947 2 42843000 0 0 VAPQNDSFGTQLPPMHQQQSR QKRPLEDGDQPDAKKVAPQNDSFGTQLPPM SFGTQLPPMHQQQSRSVMTEEYKVPDGMVG K V A S R S 1 1 1 1 0 5 0 1 1 0 1 0 1 1 3 2 1 0 0 1 0 0 21 0 2365.1233 Q96AE4 Q96AE4 78 98 FUBP1 Far upstream element-binding protein 1 yes yes 3 0.013517 41.136 By MS/MS 3 0 1 1 3780900 0 3780900 0 14023 1750 14732 61654 51949 51949 1 0 1611800 0 VAQAQAQHELEIK VVAELKQEDQRCTERVAQAQAQHELEIKKL ERVAQAQAQHELEIKKLKELMSATEKARRE R V A I K K 3 0 0 0 0 3 2 0 1 1 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1463.7732 Q9UPN4 Q9UPN4 666 678 CEP131 Centrosomal protein of 131 kDa yes yes 2;3 0.00079482 117.25 By MS/MS 2 0 2 2 13104000 0 0 13104000 14024 2215 14733 61655;61656 51950;51951 51951 2 0 0 2961300 VAQEKDQLQEQLQALK LQLRSEQQKATEKERVAQEKDQLQEQLQAL AQEKDQLQEQLQALKESLKVTKGSLEEEKR R V A L K E 2 0 0 1 0 5 2 0 0 0 3 2 0 0 0 0 0 0 0 1 0 0 16 1 1868.0003 Q14980 Q14980 693 708 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 2.4746E-73 242.4 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 120350000 0 20539000 99807000 14025 1327 14734 61657;61658;61659;61660;61661 51952;51953;51954;51955 51955 4 0 10039000 21535000 VAQIQNAGLGEFR AEKWRRQIIGEISKKVAQIQNAGLGEFRIR KKVAQIQNAGLGEFRIRDLNDEINKLLREK K V A F R I 2 1 1 0 0 2 1 2 0 1 1 0 0 1 0 0 0 0 0 1 0 0 13 0 1401.7365 Q9ULR0 Q9ULR0 57 69 ISY1 Pre-mRNA-splicing factor ISY1 homolog yes yes 2 1.9568E-07 169.58 By MS/MS By matching 6 0 2 1 1 47593000 0 23870000 23722000 14026 2189 14735 61662;61663 51956 51956 1 0 8263100 3549100 VAQLEQVYIR NCQMSNITVTYRDGRVAQLEQVYIRGSKIR YRDGRVAQLEQVYIRGSKIRFLILPDMLKN R V A I R G 1 1 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 0 1 2 0 0 10 0 1217.6768 P62318 P62318 55 64 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2 2.5789E-49 219.51 By MS/MS By MS/MS By MS/MS 8.88 0.781 3 3 2 3 2 3 900630000 78160000 369610000 452860000 14027 1024 14736 61664;61665;61666;61667;61668;61669;61670;61671 51957;51958;51959;51960;51961;51962;51963;51964;51965;51966 51958 10 53071000 242190000 142840000 VAQLLER RHGERDVEVERWRERVAQLLERWQAVLAQT EVERWRERVAQLLERWQAVLAQTDVRQREL R V A E R W 1 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 827.4865 Q15149 Q15149 1318 1324 PLEC Plectin yes yes 2 0.0024362 134.44 By matching By MS/MS By MS/MS 1 0 3 1 1 1 28911000 2752800 17289000 8869900 14028 1348 14737 61672;61673;61674 51967;51968 51967 1 2752800 8450400 1911100 VAQMPQEEVELLPPAPK IVLMAQALEKIFLQKVAQMPQEEVELLPPA QMPQEEVELLPPAPKGKGRKPAAGAQSAGT K V A P K G 2 0 0 0 0 2 3 0 0 0 2 1 1 0 4 0 0 0 0 2 0 0 17 0 1874.9812 Q15059 Q15059 137 153 BRD3 Bromodomain-containing protein 3 yes yes 2 7.8415E-06 127.37 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 2 3 39985000 0 9118900 30866000 14029 1342 14738 61675;61676;61677;61678;61679 51969;51970 51969 2 0 4155600 6591800 VAQNLVGPDNVHVALSLVEYKPELQK LNKISARCIAPETLRVAQNLVGPDNVHVAL HVALSLVEYKPELQKAMEFVFGTTFVCDNM R V A Q K A 2 0 2 1 0 2 2 1 1 0 4 2 0 0 2 1 0 0 1 5 0 0 26 1 2859.5494 O95347 O95347 593 618 SMC2 Structural maintenance of chromosomes protein 2 yes yes 4 0.019266 29.603 By MS/MS 1.5 0.5 1 1 2 20461000 0 0 20461000 14030 321 14739 61680;61681 51971 51971 1 0 0 4581500 VAQPTITDNKDGTVTVR KKGEITGEVRMPSGKVAQPTITDNKDGTVT QPTITDNKDGTVTVRYAPSEAGLHEMDIRY K V A V R Y 1 1 1 2 0 1 0 1 0 1 0 1 0 0 1 0 4 0 0 3 0 0 17 1 1813.9534 P21333 P21333 1815 1831 FLNA Filamin-A yes yes 2;3 2.963E-06 144.05 By MS/MS By MS/MS 1.2 0.4 4 1 1 4 130480000 0 66783000 63699000 14031 623 14740 61682;61683;61684;61685;61686 51972;51973;51974;51975 51974 4 0 32643000 13776000 VAQYVVR DTELQGMNEYLSSFKVAQYVVREEEMGEEE NEYLSSFKVAQYVVREEEMGEEEEVEREII K V A V R E 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 7 0 833.47594 Q14839;Q12873;Q8TDI0 Q14839 1282 1288 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.025289 96.666 By MS/MS 1 0 1 1 6135600 0 6135600 0 14032 1321;1662;1205 14741 61687 51976 51976 1 0 2999000 0 VARPLPAEEPER KDQDEKRRRVTSRERVARPLPAEEPERAKS RERVARPLPAEEPERAKSGTRTEKEEERDE R V A E R A 2 2 0 0 0 0 3 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 12 1 1362.7256 P26358 P26358 213 224 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.0021379 95.417 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 41136000 0 16253000 24884000 14033 667 14742 61688;61689;61690 51977;51978 51978 2 0 7664500 5361600 VASAGSAISNASGER VCGTSWTYNPAAVSKVASAGSAISNASGER VASAGSAISNASGERLSQLLKKLFETQESG K V A E R L 4 1 1 0 0 0 1 2 0 1 0 0 0 0 0 4 0 0 0 1 0 0 15 0 1375.6692 Q86YT6 Q86YT6 400 414 MIB1 E3 ubiquitin-protein ligase MIB1 yes yes 2 0.001172 96.745 By MS/MS 2 0 1 1 1926300 0 0 1926300 14034 1564 14743 61691 51979 51979 1 0 0 435300 VASIETGLAAAAAK PSVPRQDRPVREGTRVASIETGLAAAAAKL RVASIETGLAAAAAKLSQQEEQKSKKKKSA R V A A K L 6 0 0 0 0 0 1 1 0 1 1 1 0 0 0 1 1 0 0 1 0 0 14 0 1271.7085 O75151;Q9UPP1 O75151 927 940 PHF2;PHF8 Lysine-specific demethylase PHF2;Histone lysine demethylase PHF8 yes no 2 0.0034157 94.616 By MS/MS 2 0.816 1 1 1 3 22362000 0 0 22362000 14035 243 14744 61692;61693;61694 51980 51980 1 0 0 4818000 VASLDYLGTVAAR LVHQFSNKSTEMALRVASLDYLGTVAARLR LRVASLDYLGTVAARLRKDAVTSKMDQGSI R V A A R L 3 1 0 1 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 2 0 0 13 0 1334.7194 Q6KC79 Q6KC79 1607 1619 NIPBL Nipped-B-like protein yes yes 2 2.1542E-11 179.42 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 36847000 1244500 14494000 21109000 14036 1480 14745 61695;61696;61697;61698 51981;51982 51982 2 1244500 7084300 4576200 VASLEESEGNKQDLK VQKRSQKEINDMKAKVASLEESEGNKQDLK VASLEESEGNKQDLKALKEAVKEIQTSAKS K V A L K A 1 0 1 1 0 1 3 1 0 0 2 2 0 0 0 2 0 0 0 1 0 0 15 1 1645.8159 Q07065 Q07065 273 287 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 2.0542E-16 186.81 By MS/MS By MS/MS 3.14 0.639 1 4 2 3 4 53831000 0 13611000 40219000 14037 1176 14746 61699;61700;61701;61702;61703;61704;61705 51983;51984;51985;51986 51984 4 0 5849300 7712100 VASMAPVTAEGFQER AHYKTDWHRYNLRRKVASMAPVTAEGFQER VASMAPVTAEGFQERVRAQRAVAEEESKGS K V A E R V 3 1 0 0 0 1 2 1 0 0 0 0 1 1 1 1 1 0 0 2 0 0 15 0 1591.7664 Q969S3 Q969S3 36 50 ZNF622 Zinc finger protein 622 yes yes 2 0.00050109 110.08 By matching By MS/MS 3.33 0.471 2 1 1 2 25311000 14942000 0 10369000 14038 1745 14747 61706;61707;61708 51987 51987 1 17240000 0 1793100 VASNPYTWFTMEALEETWR FNQLAELDRQIKSFRVASNPYTWFTMEALE PYTWFTMEALEETWRNLQKIIKERELELQK R V A W R N 2 1 1 0 0 0 3 0 0 0 1 0 1 1 1 1 3 2 1 1 0 0 19 0 2330.0678 Q13813 Q13813 2162 2180 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 1.2656E-09 134.37 By MS/MS 1.5 0.5 2 2 4 14056000 0 0 14056000 14039 1268 14748 61709;61710;61711;61712 51988;51989;51990 51990 3 0 0 3155200 VASSSSGNNFLSGSPASPMGDILQTPQFQMR SHQAKREIRFLELQKVASSSSGNNFLSGSP SPMGDILQTPQFQMRRLKKQLADERSNRDE K V A M R R 2 1 2 1 0 3 0 3 0 1 2 0 2 2 3 7 1 0 0 1 0 0 31 0 3210.5074 Q14980 Q14980 187 217 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 3 1.6895E-50 147.85 By MS/MS By MS/MS 1 0 2 1 1 29968000 0 15567000 14401000 14040 1327 14749 61713;61714 51991;51992 51992 2 0 7609000 3102900 VASTLTEEGGGGGGGGGSVAPKPPR PGSQALQVVPDLSKKVASTLTEEGGGGGGG GGGGGGGSVAPKPPRGRKKKRMLESGLPEM K V A P R G 2 1 0 0 0 0 2 9 0 0 1 1 0 0 3 2 2 0 0 2 0 0 25 1 2194.0978 Q8TF68 Q8TF68 168 192 ZNF384 Zinc finger protein 384 yes yes 3 1.0578E-28 132.1 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 27411000 0 11003000 16408000 14041 1669 14750 61715;61716;61717;61718 51993;51994;51995 51993 2 0 3929900 2954600 VASVFANADKGDDEKNTDNSEDSR SVRFVPRDVPLPVVRVASVFANADKGDDEK KGDDEKNTDNSEDSRAEDNFNLEKEKEDVP R V A S R A 3 1 3 5 0 0 2 1 0 0 0 2 0 1 0 3 1 0 0 2 0 0 24 2 2583.1321 Q86U86 Q86U86 1097 1120 PBRM1 Protein polybromo-1 yes yes 3 1.2091E-29 176.84 By MS/MS 1 0 1 1 4100700 0 0 4100700 14042 1545 14751 61719 51996 51996 1 0 0 883550 VASVSQNAIVSAAGNIAR IQVYDLGQDGQGMSRVASVSQNAIVSAAGN VSQNAIVSAAGNIARTIDRSVFKPIVQIAV R V A A R T 5 1 2 0 0 1 0 1 0 2 0 0 0 0 0 3 0 0 0 3 0 0 18 0 1726.9326 O75694 O75694 315 332 NUP155 Nuclear pore complex protein Nup155 yes yes 2 1.2957E-09 159.64 By MS/MS 2 0 1 1 7911300 0 0 7911300 14043 281 14752 61720 51997 51997 1 0 0 1787800 VATLNSEEESDPPTYK SFAEHRSGLVPQQIKVATLNSEEESDPPTY ATLNSEEESDPPTYKDAFPPLPEKAACLES K V A Y K D 1 0 1 1 0 0 3 0 0 0 1 1 0 0 2 2 2 0 1 1 0 0 16 0 1778.821 Q00341 Q00341 26 41 HDLBP Vigilin yes yes 2 1.8934E-07 113.24 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 5257700 0 5257700 0 14044 1122 14753 61721;61722;61723 51998;51999 51999 2 0 2446700 0 VATSSLDQTVK PITDLHCGFGGPLARVATSSLDQTVKLWEV PLARVATSSLDQTVKLWEVSSGELLLSVLF R V A V K L 1 0 0 1 0 1 0 0 0 0 1 1 0 0 0 2 2 0 0 2 0 0 11 0 1147.6085 Q9BV38 Q9BV38 189 199 WDR18 WD repeat-containing protein 18 yes yes 2 0.0055877 99.815 By MS/MS 5 0 1 1 19435000 0 0 19435000 14045 1910 14754 61724 52000 52000 1 0 0 2710800 VATVSLPR IMLIKLSSPATLNSRVATVSLPRSCAAAGT PATLNSRVATVSLPRSCAAAGTECLISGWG R V A P R S 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 8 0 841.50215 CON__P00761 CON__P00761 108 115 yes yes 2 6.4967E-05 149.4 By MS/MS By MS/MS By MS/MS 5.7 3.18 5 5 4 4 4 3 3 3 5 8 15 17 12 152630000000 78465000000 33475000000 40688000000 + 14046 32 14755 61725;61726;61727;61728;61729;61730;61731;61732;61733;61734;61735;61736;61737;61738;61739;61740;61741;61742;61743;61744;61745;61746;61747;61748;61749;61750;61751;61752;61753;61754;61755;61756;61757;61758;61759;61760;61761;61762;61763;61764;61765;61766;61767;61768 52001;52002;52003;52004;52005;52006;52007;52008;52009;52010;52011;52012;52013;52014;52015;52016;52017;52018;52019;52020;52021;52022;52023;52024;52025;52026;52027;52028;52029;52030;52031;52032;52033;52034;52035;52036;52037;52038;52039;52040;52041;52042;52043;52044;52045;52046;52047;52048;52049;52050;52051;52052;52053;52054;52055;52056;52057;52058;52059;52060;52061;52062;52063;52064;52065;52066;52067;52068;52069;52070;52071;52072;52073;52074;52075;52076;52077;52078;52079;52080;52081;52082;52083;52084;52085;52086;52087;52088;52089;52090;52091;52092;52093;52094;52095;52096;52097;52098;52099;52100;52101;52102;52103;52104;52105;52106;52107;52108;52109;52110;52111;52112;52113;52114;52115;52116;52117;52118;52119;52120;52121;52122;52123;52124;52125;52126;52127;52128;52129;52130;52131;52132;52133;52134;52135;52136;52137;52138;52139;52140;52141;52142;52143;52144;52145;52146;52147;52148;52149;52150;52151;52152 52143 152 98323000000 55054000000 30650000000 VATWFNQPAR GMVLKPHFHKDWQRRVATWFNQPARKIRRR DWQRRVATWFNQPARKIRRRKARQAKARRI R V A A R K 2 1 1 0 0 1 0 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 10 0 1188.604 P26373 P26373 22 31 RPL13 60S ribosomal protein L13 yes yes 2 2.4002E-22 190.08 By MS/MS By MS/MS By MS/MS 5.27 2.49 1 1 1 1 1 2 3 1 1 7 3 706380000 14045000 252480000 439860000 14047 669 14756 61769;61770;61771;61772;61773;61774;61775;61776;61777;61778;61779 52153;52154;52155;52156;52157;52158;52159;52160;52161;52162;52163;52164;52165 52163 13 30270000 119300000 90602000 VATWFNQPARK GMVLKPHFHKDWQRRVATWFNQPARKIRRR WQRRVATWFNQPARKIRRRKARQAKARRIA R V A R K I 2 1 1 0 0 1 0 0 0 0 0 1 0 1 1 0 1 1 0 1 0 0 11 1 1316.699 P26373 P26373 22 32 RPL13 60S ribosomal protein L13 yes yes 2;3 0.030452 79.713 By MS/MS 6.5 0.5 2 2 4 19915000 0 19915000 0 14048 669 14757 61780;61781;61782;61783 52166;52167;52168 52168 3 0 8430900 0 VAVAIPNRPPDAVLTDTTSLNQAALYR GSGGFGGKRTSDKVKVAVAIPNRPPDAVLT VLTDTTSLNQAALYRLSGDWNPLHIDPNFA K V A Y R L 5 2 2 2 0 1 0 0 0 1 3 0 0 0 3 1 3 0 1 3 0 0 27 1 2865.5349 P51659 P51659 480 506 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 3 2.6026E-38 144.76 By MS/MS 3 0 1 1 8583900 0 8583900 0 14049 898 14758 61784 52169 52169 1 0 3659300 0 VAVEEVDEEGK ESRSSFSQHARTSGRVAVEEVDEEGKFVRL TSGRVAVEEVDEEGKFVRLRNKSNEDQSMG R V A G K F 1 0 0 1 0 0 4 1 0 0 0 1 0 0 0 0 0 0 0 3 0 0 11 0 1202.5667 P02545 P02545 440 450 LMNA Prelamin-A/C;Lamin-A/C yes yes 2 1.8246E-09 165.83 By MS/MS By MS/MS 3.6 1.8 1 2 3 1 1 1 1 3 7 348050000 0 26005000 322050000 14050 387 14759 61785;61786;61787;61788;61789;61790;61791;61792;61793;61794 52170;52171;52172;52173;52174;52175;52176;52177 52173 7 0 10888000 61868000 VAVEEVDEEGKFVR ESRSSFSQHARTSGRVAVEEVDEEGKFVRL RVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ R V A V R L 1 1 0 1 0 0 4 1 0 0 0 1 0 1 0 0 0 0 0 4 0 0 14 1 1604.8046 P02545 P02545 440 453 LMNA Prelamin-A/C;Lamin-A/C yes yes 2;3 1.9737E-16 190.86 By MS/MS By MS/MS 3.4 0.49 3 2 1 4 192140000 0 5736100 186400000 14051 387 14760 61795;61796;61797;61798;61799 52178;52179;52180 52180 3 0 2445300 35616000 VAVEYLDPSPEVQK FPNKQGYVLSSIEGRVAVEYLDPSPEVQKK RVAVEYLDPSPEVQKKKYAFKCHRLKENNI R V A Q K K 1 0 0 1 0 1 2 0 0 0 1 1 0 0 2 1 0 0 1 3 0 0 14 0 1572.8035 O43684 O43684 203 216 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 0.00037762 130.01 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 46661000 0 7633100 39028000 14052 209 14761 61800;61801;61802 52181;52182;52183 52181 3 0 2642300 5606100 VAVFFGGLSIK SKEYERFSKYMPNVKVAVFFGGLSIKKDEE PNVKVAVFFGGLSIKKDEEVLKKNCPHIVV K V A I K K 1 0 0 0 0 0 0 2 0 1 1 1 0 2 0 1 0 0 0 2 0 0 11 0 1136.6594 Q13838 Q13838 145 155 DDX39B Spliceosome RNA helicase DDX39B yes yes 2 0.0040577 103.7 By MS/MS 3 1.41 1 1 1 1 1 5 38462000 0 0 38462000 14053 1271 14762 61803;61804;61805;61806;61807 52184;52185 52184 2 0 0 5792300 VAVGELTDEDVK ATVILANHVAKKDNKVAVGELTDEDVKMIT DNKVAVGELTDEDVKMITSLSKDQQIGEKI K V A V K M 1 0 0 2 0 0 2 1 0 0 1 1 0 0 0 0 1 0 0 3 0 0 12 0 1273.6402 P49736 P49736 451 462 MCM2 DNA replication licensing factor MCM2 yes yes 2 0.0080249 97.456 By MS/MS 2 0 1 1 7337200 0 7337200 0 14054 864 14763 61808 52186 52186 1 0 3304100 0 VAVGQEQAFSVNTR PLDLSKIKVQGLNSKVAVGQEQAFSVNTRG KVAVGQEQAFSVNTRGAGGQGQLDVRMTSP K V A T R G 2 1 1 0 0 2 1 1 0 0 0 0 0 1 0 1 1 0 0 3 0 0 14 0 1504.7634 Q14315 Q14315 978 991 FLNC Filamin-C yes yes 2 1.6459E-11 180.66 By MS/MS 1.5 0.5 1 1 2 19155000 0 19155000 0 14055 1298 14764 61809;61810 52187 52187 1 0 9257200 0 VAVLENQNK CRRKKKEYVKCLENRVAVLENQNKTLIEEL KCLENRVAVLENQNKTLIEELKALKDLYCH R V A N K T 1 0 2 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1013.5506 P16220;P18846 P16220 315 323 CREB1;ATF1 Cyclic AMP-responsive element-binding protein 1;Cyclic AMP-dependent transcription factor ATF-1 no no 2 0.0054438 96.253 By MS/MS By matching 6.5 0.5 1 1 1 1 6743900 0 5096500 1647300 14056 575;601 14765 61811;61812 52188 52188 1 0 1764200 292310 VAVLGASGGIGQPLSLLLK ALRRSFSTSAQNNAKVAVLGASGGIGQPLS GASGGIGQPLSLLLKNSPLVSRLTLYDIAH K V A L K N 2 0 0 0 0 1 0 4 0 1 5 1 0 0 1 2 0 0 0 2 0 0 19 0 1792.0822 P40926 P40926 27 45 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 0.0001584 96.591 By MS/MS By MS/MS By MS/MS 6.8 1.17 3 1 1 1 1 3 23613000 1100800 4229700 18282000 14057 786 14766 61813;61814;61815;61816;61817 52189;52190;52191 52191 3 1465800 1464200 2775200 VAVLQALASTVNR GIEEVVIPKKKTWDKVAVLQALASTVNRDT DKVAVLQALASTVNRDTTAVPYVFQDDPYL K V A N R D 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 1 1 0 0 3 0 0 13 0 1340.7776 Q96EY7 Q96EY7 68 80 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.00030163 136.84 By MS/MS By MS/MS 3 0 2 1 1 10773000 0 3955300 6818000 14058 1780 14767 61818;61819 52192;52193 52192 2 0 1686200 1322400 VAVVAGYGDVGK IDGIKRATDVMIAGKVAVVAGYGDVGKGCA AGKVAVVAGYGDVGKGCAQALRGFGARVII K V A G K G 2 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 0 0 1 4 0 0 12 0 1133.6081 P23526 P23526 215 226 AHCY Adenosylhomocysteinase yes yes 2 0.016143 87.298 By MS/MS By MS/MS By MS/MS 4.67 0.943 1 1 3 1 1 1 4 32530000 9645600 4075300 18809000 14059 643 14768 61820;61821;61822;61823;61824;61825 52194;52195;52196 52196 3 7727400 1050500 2790300 VAVVGNVDAGK LVRKRVGDNDFLEVRVAVVGNVDAGKSTLL LEVRVAVVGNVDAGKSTLLGVLTHGELDNG R V A G K S 2 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 4 0 0 11 0 1027.5662 O00178 O00178 163 173 GTPBP1 GTP-binding protein 1 yes yes 2 0.070573 68.893 By matching By MS/MS By MS/MS 3 0 3 1 1 1 30204000 4981100 8932300 16291000 14060 110 14769 61826;61827;61828 52197;52198 52197 2 5747000 3807900 3159600 VAVVNQIAR RFESLEPEMNNQASRVAVVNQIARQLMHSG NNQASRVAVVNQIARQLMHSGHPSEKEIKA R V A A R Q 2 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 3 0 0 9 0 968.57671 Q01082 Q01082 905 913 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00054733 135.35 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 107720000 3467400 47260000 56989000 14061 1128 14770 61829;61830;61831 52199;52200;52201 52201 2 3467400 23100000 12279000 VAVWPVLR SLNRLLLVPCPPLRRVAVWPVLRERAGAPG PCPPLRRVAVWPVLRERAGAPGARNTAAVL R V A L R E 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 3 0 0 8 0 938.57017 Q9BVQ7 Q9BVQ7 110 117 SPATA5L1 Spermatogenesis-associated protein 5-like protein 1 yes yes 2 0.0039561 103.29 By MS/MS 3 0 1 1 3608300 0 3608300 0 14062 1918 14771 61832 52202 52202 1 0 1538200 0 VAYEGSDSEKGEGAEPLK SHSPVKRPRKAQRLRVAYEGSDSEKGEGAE EGSDSEKGEGAEPLKVPVWEPQDWQQQLVN R V A L K V 2 0 0 1 0 0 4 3 0 0 1 2 0 0 1 2 0 0 1 1 0 0 18 1 1864.8691 P78549 P78549 66 83 NTHL1 Endonuclease III-like protein 1 yes yes 3 0.0054472 56.936 By MS/MS 6 0 1 1 10754000 0 0 10754000 14063 1090 14772 61833 52203 52203 1 0 0 1609000 VAYIPDEMAAQQNPLQQPR LDKLNGFQLENFTLKVAYIPDEMAAQQNPL PDEMAAQQNPLQQPRGRRGLGQRGSSRQGS K V A P R G 3 1 1 1 0 4 1 0 0 1 1 0 1 0 3 0 0 0 1 1 0 0 19 0 2168.0684 O00425 O00425 151 169 IGF2BP3 Insulin-like growth factor 2 mRNA-binding protein 3 yes yes 2;3 6.8254E-52 221.32 By MS/MS By MS/MS 3.12 1.27 1 1 4 2 6 2 64431000 0 32489000 31943000 14064 121 14773 61834;61835;61836;61837;61838;61839;61840;61841 52204;52205;52206;52207;52208;52209 52208 6 0 12379000 6195300 VAYVSFGPHAGK ______________________________ VGRVAYVSFGPHAGKLVAIVDVIDQNRALV R V A G K L 2 0 0 0 0 0 0 2 1 0 0 1 0 1 1 1 0 0 1 2 0 0 12 0 1231.635 P50914 P50914 12 23 RPL14 60S ribosomal protein L14 yes yes 2;3 0.00048694 126.07 By MS/MS By MS/MS 6 2.28 1 1 1 2 3 1 1 8 2 496500000 0 287050000 209450000 14065 884 14774 61842;61843;61844;61845;61846;61847;61848;61849;61850;61851 52210;52211;52212;52213;52214;52215 52213 6 0 199340000 37093000 VCNYVNWIQQTIAAN GYGCAQKNKPGVYTKVCNYVNWIQQTIAAN VCNYVNWIQQTIAAN_______________ K V C A N - 2 0 3 0 1 2 0 0 0 2 0 0 0 0 0 0 1 1 1 2 0 0 15 0 1792.8567 CON__P00761 CON__P00761 217 231 yes yes 2 1.0053E-11 170.72 By MS/MS By MS/MS By MS/MS 4.65 2.55 3 2 3 2 2 2 2 3 1 7 8 5 220300000 55899000 111240000 53167000 + 14066 32 14775 61852;61853;61854;61855;61856;61857;61858;61859;61860;61861;61862;61863;61864;61865;61866;61867;61868;61869;61870;61871 52216;52217;52218;52219;52220;52221;52222;52223;52224;52225;52226;52227;52228;52229;52230;52231;52232;52233 52222 18 47292000 41405000 9619100 VCSQYAAYGEK LQLKHLSLLTTLSNRVCSQYAAYGEKKSRL LSNRVCSQYAAYGEKKSRLSNLIKLAQKVP R V C E K K 2 0 0 0 1 1 1 1 0 0 0 1 0 0 0 1 0 0 2 1 0 0 11 0 1274.5601 P02774 P02774 219 229 GC Vitamin D-binding protein yes yes 2 0.007762 95.573 By MS/MS 9 0 1 1 7310100 7310100 0 0 14067 397 14776 61872 52234 52234 1 4103200 0 0 VCTLAIIDPGDSDIIR GNNIELGTACGKYYRVCTLAIIDPGDSDII CTLAIIDPGDSDIIRSMPEQTGEK______ R V C I R S 1 1 0 3 1 0 0 1 0 4 1 0 0 0 1 1 1 0 0 1 0 0 16 0 1756.9029 P62888 P62888 91 106 RPL30 60S ribosomal protein L30 yes yes 2 1.509E-12 178.1 By MS/MS By MS/MS 8.5 0.5 2 2 2 2 48499000 6602000 0 41897000 14068 1046 14777 61873;61874;61875;61876 52235;52236;52237 52236 3 4288000 0 8148800 VDAEWWAETLRPYQSPFMDR QRYDPVWMTVTRKCRVDAEWWAETLRPYQS WAETLRPYQSPFMDREKKEDLEFQAKHMDQ R V D D R E 2 2 0 2 0 1 2 0 0 0 1 0 1 1 2 1 1 2 1 1 0 0 20 1 2496.1532 Q01831 Q01831 598 617 XPC DNA repair protein complementing XP-C cells yes yes 3 1.206E-07 102.57 By MS/MS 2 0 1 1 2267900 0 0 2267900 14069 1140 14778 61877 52238 52238 1 0 0 512500 VDALMDEINFMK DVDAAYMNKVELEAKVDALMDEINFMKMFF EAKVDALMDEINFMKMFFDAELSQMQTHVS K V D M K M 1 0 1 2 0 0 1 0 0 1 1 1 2 1 0 0 0 0 0 1 0 0 12 0 1424.668 CON__P13647;P13647 CON__P13647 293 304 KRT5 Keratin, type II cytoskeletal 5 no no 2 2.2976E-25 200.6 By MS/MS By MS/MS By MS/MS 5.07 3.05 7 4 5 5 4 4 2 3 4 5 25 5 13 521860000 385430000 9031000 127390000 + 14070 58 14779;14780;14781 61878;61879;61880;61881;61882;61883;61884;61885;61886;61887;61888;61889;61890;61891;61892;61893;61894;61895;61896;61897;61898;61899;61900;61901;61902;61903;61904;61905;61906;61907;61908;61909;61910;61911;61912;61913;61914;61915;61916;61917;61918;61919;61920 52239;52240;52241;52242;52243;52244;52245;52246;52247;52248;52249;52250;52251;52252;52253;52254;52255;52256;52257;52258;52259;52260;52261;52262;52263;52264 52257 48;49 26 329600000 6085500 29843000 VDALNDEIR GTDLLSQLSLEDQKRVDALNDEIRQLQQEN LEDQKRVDALNDEIRQLQQENRQLLNERIK R V D I R Q 1 1 1 2 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1043.5247 Q9UQE7 Q9UQE7 797 805 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.00066644 114.89 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 35684000 0 16392000 19292000 14071 2222 14782 61921;61922;61923 52265;52266;52267 52267 3 0 7569000 4156800 VDATAETDLAK AKELSKRSPPIPLAKVDATAETDLAKRFDV PLAKVDATAETDLAKRFDVSGYPTLKIFRK K V D A K R 3 0 0 2 0 0 1 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 11 0 1132.5612 P13667 P13667 235 245 PDIA4 Protein disulfide-isomerase A4 yes yes 2 0.040234 76.143 By MS/MS 3 0 1 1 11720000 0 0 11720000 14072 549 14783 61924 52268 52268 1 0 0 2273100 VDATEESDLAQQYGVR AGKLKAEGSEIRLAKVDATEESDLAQQYGV DATEESDLAQQYGVRGYPTIKFFRNGDTAS K V D V R G 2 1 0 2 0 2 2 1 0 0 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1779.8275 P07237 P07237 82 97 P4HB Protein disulfide-isomerase yes yes 2 5.486E-150 283.44 By MS/MS 4 0 1 1 10590000 0 0 10590000 14073 456 14784 61925 52269 52269 1 0 0 1729800 VDAVIPPYPR FSEDKYYRVNLRTRRVDAVIPPYPRSIAQY LRTRRVDAVIPPYPRSIAQYWLGCPVPGQA R V D P R S 1 1 0 1 0 0 0 0 0 1 0 0 0 0 3 0 0 0 1 2 0 0 10 0 1125.6182 CON__Q3ZBS7 CON__Q3ZBS7 460 469 yes yes 2 0.00052607 128.69 By MS/MS By MS/MS 8.67 1.37 1 1 2 2 4 2 250710000 107330000 0 143380000 + 14074 88 14785 61926;61927;61928;61929;61930;61931 52270;52271;52272;52273;52274;52275;52276;52277;52278;52279 52274 10 148680000 0 188610000 VDAYHLQLQNLLYEVMHLQK RLKKGRDQTHEAKQKVDAYHLQLQNLLYEV LQLQNLLYEVMHLQKEITKCLEFKSKHEEI K V D Q K E 1 0 1 1 0 3 1 0 2 0 5 1 1 0 0 0 0 0 2 2 0 0 20 0 2454.273 Q13769 Q13769 123 142 THOC5 THO complex subunit 5 homolog yes yes 4 0.065858 24.679 By MS/MS 2.5 0.5 1 1 2 16699000 0 0 16699000 14075 1267 14786 61932;61933 52280 52280 1 0 0 3265800 VDDDLGTIESLEEAK QVLALQSQLADTKKKVDDDLGTIESLEEAK VDDDLGTIESLEEAKKKLLKDAEALSQRLE K V D A K K 1 0 0 3 0 0 3 1 0 1 2 1 0 0 0 1 1 0 0 1 0 0 15 0 1632.773 P35580 P35580 1380 1394 MYH10 Myosin-10 yes yes 2 0.00028234 130.56 By MS/MS By MS/MS 1 0 2 1 1 13151000 0 4419400 8731300 14076 753 14787 61934;61935 52281;52282 52281 2 0 2160200 1881300 VDDEPMDVDKGPGSTK REEEKKRHSYFEKPKVDDEPMDVDKGPGST DDEPMDVDKGPGSTKELIKSINEKFAGSAG K V D T K E 0 0 0 4 0 0 1 2 0 0 0 2 1 0 2 1 1 0 0 2 0 0 16 1 1688.7563 Q13123 Q13123 389 404 IK Protein Red yes yes 3 0.042454 41.86 By MS/MS 3 0 1 1 10286000 0 0 10286000 14077 1222 14788 61936 52283 52283 1 0 0 1995000 VDDYSQEWAAQTEK PDIYFASVSETFETKVDDYSQEWAAQTEKS KVDDYSQEWAAQTEKSYEKSELSLDRLRTL K V D E K S 2 0 0 2 0 2 2 0 0 0 0 1 0 0 0 1 1 1 1 1 0 0 14 0 1668.7267 O95602 O95602 1167 1180 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 0.036233 66.56 By MS/MS 1 0 1 1 4491900 0 0 4491900 14078 330 14789 61937 52284 52284 0 0 0 967860 VDEAVAVLQAHHAK ELLHMLESPESLRSKVDEAVAVLQAHHAKK KVDEAVAVLQAHHAKKEAAQKVGAVAAATS K V D A K K 4 0 0 1 0 1 1 0 2 0 1 1 0 0 0 0 0 0 0 3 0 0 14 0 1486.7892 Q13310 Q13310 616 629 PABPC4 Polyadenylate-binding protein 4 yes yes 2;3 0.00084606 89.013 By MS/MS 3 0 2 2 13500000 0 13500000 0 14079 1237 14790 61938;61939 52285;52286 52285 2 0 5755100 0 VDEAVAVLQAHQAK ELLHMLESPESLRSKVDEAVAVLQAHQAKE KVDEAVAVLQAHQAKEAAQKAVNSATGVPT K V D A K E 4 0 0 1 0 2 1 0 1 0 1 1 0 0 0 0 0 0 0 3 0 0 14 0 1477.7889 P11940;Q9H361 P11940 607 620 PABPC1;PABPC3 Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 yes no 2;3 3.4896E-17 188.99 By MS/MS By MS/MS 3 0 4 2 2 97328000 0 75214000 22114000 14080 530 14791 61940;61941;61942;61943 52287;52288;52289;52290 52288 4 0 32064000 4289100 VDEEQMK IQGFRYGSDIVPFSKVDEEQMKYKSEGKCF SDIVPFSKVDEEQMKYKSEGKCFSVLGFCK K V D M K Y 0 0 0 1 0 1 2 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 7 0 877.38513 P13010 P13010 326 332 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.044859 78.616 By MS/MS 3 0 1 1 2113800 0 0 2113800 14081 542 14792 61944 52291;52292 52292 2 0 0 409980 VDEFPLCGHMVSDEYEQLSSEALEAAR DAKIRIFDLGRKKAKVDEFPLCGHMVSDEY DEYEQLSSEALEAARICANKYMVKSCGKDG K V D A R I 3 1 0 2 1 1 5 1 1 0 3 0 1 1 1 3 0 0 1 2 0 0 27 0 3081.3696 P27635 P27635 43 69 RPL10 60S ribosomal protein L10 yes yes 3 1.1293E-10 83.992 By MS/MS 7 0 1 1 3549400 0 0 3549400 14082 678 14793 61945 52293 52293 1 0 0 629820 VDEIFGQLR FNAPVYLENKEQIGKVDEIFGQLRDFYFSV KEQIGKVDEIFGQLRDFYFSVKLSENMKAS K V D L R D 0 1 0 1 0 1 1 1 0 1 1 0 0 1 0 0 0 0 0 1 0 0 9 0 1075.5662 Q9NY12 Q9NY12 113 121 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2 0.00046492 119.17 By MS/MS By MS/MS 7 0 2 1 1 94871000 0 9945400 84925000 14083 2093 14794 61946;61947 52294;52295 52294 2 0 5710700 15069000 VDELEAALR AEQRGELALKDAQAKVDELEAALRMAKQNL KDAQAKVDELEAALRMAKQNLARLLCEYQE K V D L R M 2 1 0 1 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1014.5346 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 376 384 KRT78 Keratin, type II cytoskeletal 78 yes no 2 9.3836E-07 130.27 By MS/MS By MS/MS 5.57 3.42 2 1 1 1 1 1 5 2 39527000 32887000 0 6640200 + 14084 94 14795 61948;61949;61950;61951;61952;61953;61954 52296;52297;52298;52299;52300;52301 52298 6 26828000 0 6319900 VDELQQQVK AITLAERKYSDEKKRVDELQQQVKLYKLNL SDEKKRVDELQQQVKLYKLNLESSKQELID R V D V K L 0 0 0 1 0 3 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 0 1085.5717 Q8TBA6 Q8TBA6 407 415 GOLGA5 Golgin subfamily A member 5 yes yes 2 0.0033353 100.19 By MS/MS By MS/MS By matching 7 0 3 1 1 1 134310000 34880000 12835000 86595000 14085 1656 14796 61955;61956;61957 52302;52303 52302 2 75174000 7369900 15366000 VDENHSEFTLYESR DMMRRAARALLALAKVDENHSEFTLYESRL KVDENHSEFTLYESRLLDISVSPLMNSLVS K V D S R L 0 1 1 1 0 0 3 0 1 0 1 0 0 1 0 2 1 0 1 1 0 0 14 0 1724.7642 O14497 O14497 2244 2257 ARID1A AT-rich interactive domain-containing protein 1A yes yes 2 1.1956E-18 129.34 By MS/MS 1 0 1 1 0 0 0 0 14086 134 14797 61958 52304 52304 1 0 0 0 VDEVGGEALGR AEEKAAVTSLFAKVKVDEVGGEALGRLLVV AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V D G R L 1 1 0 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 2 0 0 11 0 1100.5462 CON__Q3SX09;CON__P02070 CON__Q3SX09 75 85 yes no 2 4.9504E-10 172.23 By MS/MS By MS/MS 8.83 1.07 1 1 2 2 2 4 342140000 54476000 0 287660000 + 14087 82 14798 61959;61960;61961;61962;61963;61964 52305;52306;52307;52308;52309;52310 52310 6 40503000 0 182530000 VDEVPDGAVKPPTNK LIFAKMKGYPHWPARVDEVPDGAVKPPTNK VDEVPDGAVKPPTNKLPIFFFGTHETAFLG R V D N K L 1 0 1 2 0 0 1 1 0 0 0 2 0 0 3 0 1 0 0 3 0 0 15 1 1564.8097 O75475 O75475 25 39 PSIP1 PC4 and SFRS1-interacting protein yes yes 2;3 0.00015581 101.36 By MS/MS By MS/MS 3.87 1.75 2 1 4 2 3 2 1 3 12 330990000 0 29590000 301400000 14088 262 14799 61965;61966;61967;61968;61969;61970;61971;61972;61973;61974;61975;61976;61977;61978;61979 52311;52312;52313;52314;52315;52316;52317;52318;52319;52320;52321;52322;52323 52312 13 0 9834900 51433000 VDFPQDQLTALTGR AGKTIIPLISQCTPKVDFPQDQLTALTGRI KVDFPQDQLTALTGRIQEAGTEVVKAKAGA K V D G R I 1 1 0 2 0 2 0 1 0 0 2 0 0 1 1 0 2 0 0 1 0 0 14 0 1559.7944 P40926 P40926 216 229 MDH2 Malate dehydrogenase, mitochondrial yes yes 2 0.024328 72.289 By MS/MS 6 0 1 1 5468200 0 0 5468200 14089 786 14800 61980 52324 52324 1 0 0 818100 VDFPSSVR ALHDILTEIHLFVHRVDFPSSVRIHLLTKM IHLFVHRVDFPSSVRIHLLTKMADIEYRLS R V D V R I 0 1 0 1 0 0 0 0 0 0 0 0 0 1 1 2 0 0 0 2 0 0 8 0 905.46068 P40937 P40937 291 298 RFC5 Replication factor C subunit 5 yes yes 2 0.0036854 104.21 By matching By matching By MS/MS 4.5 1.66 1 1 2 1 2 1 13551000 1570000 4870800 7110400 14090 787 14801 61981;61982;61983;61984 52325 52325 1 1891700 1672300 1063800 VDFPTAIGMVVER SYTVRAGYAGEDCPKVDFPTAIGMVVERDD PKVDFPTAIGMVVERDDGSTLMEIDGDKGK K V D E R D 1 1 0 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0 0 3 0 0 13 0 1432.7384 O96019 O96019 35 47 ACTL6A Actin-like protein 6A yes yes 2 0.00027177 133.07 By MS/MS 4.5 0.5 1 1 2 25795000 0 0 25795000 14091 354 14802 61985;61986 52326;52327;52328 52327 3 0 0 3768000 VDFSITK KERANGMELDGRRIRVDFSITKRPHTPTPG ELDGRRIRVDFSITKRPHTPTPGIYMGRPT R V D T K R 0 0 0 1 0 0 0 0 0 1 0 1 0 1 0 1 1 0 0 1 0 0 7 0 808.43307 P62995 P62995 191 197 TRA2B Transformer-2 protein homolog beta yes yes 2 0.03385 89.369 By matching By MS/MS 4.83 1.34 1 2 1 1 1 2 4 91413000 3272600 0 88141000 14092 1055 14803 61987;61988;61989;61990;61991;61992 52329;52330;52331 52329 3 3245100 0 13255000 VDFSPQPPYNYAVTASSR YKTPVQIKEFGAVSKVDFSPQPPYNYAVTA SPQPPYNYAVTASSRIHIYGRYSQEPIKTF K V D S R I 2 1 1 1 0 1 0 0 0 0 0 0 0 1 3 3 1 0 2 2 0 0 18 0 1997.9483 Q8TED0 Q8TED0 44 61 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2;3 2.2129E-30 198.03 By MS/MS By MS/MS 4 0 3 2 1 32173000 0 17685000 14489000 14093 1665 14804 61993;61994;61995 52332;52333;52334;52335 52335 4 0 5868800 2366500 VDFTNHLEDTRR YIECAEKLYDAKVERVDFTNHLEDTRRNIN VERVDFTNHLEDTRRNINKWVENETHGKIK R V D R R N 0 2 1 2 0 0 1 0 1 0 1 0 0 1 0 0 2 0 0 1 0 0 12 1 1501.7274 O75635 O75635 129 140 SERPINB7 Serpin B7 yes yes 3 0.0015481 96.067 By MS/MS 8.5 0.5 1 1 2 5891700 5891700 0 0 14094 276 14805 61996;61997 52336 52336 1 3989900 0 0 VDGIAWSPETR GIQYKTLRTFHHGVRVDGIAWSPETRLDSL HGVRVDGIAWSPETRLDSLPPVIKFCTSAA R V D T R L 1 1 0 1 0 0 1 1 0 1 0 0 0 0 1 1 1 1 0 1 0 0 11 0 1229.6041 Q8NFH4 Q8NFH4 75 85 NUP37 Nucleoporin Nup37 yes yes 2 0.029856 81.099 By MS/MS 6 0 1 1 0 0 0 0 14095 1642 14806 61998 52337 52337 1 0 0 0 VDGSVNAYAINVSQK KLMGFASFDSTKGKKVDGSVNAYAINVSQK VDGSVNAYAINVSQKRKYRQYMNRKGGFNR K V D Q K R 2 0 2 1 0 1 0 1 0 1 0 1 0 0 0 2 0 0 1 3 0 0 15 0 1563.7893 Q8WVK2 Q8WVK2 120 134 SNRNP27 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein yes yes 2 0.0011872 96.64 By matching By MS/MS 7 0 2 1 1 10808000 0 1710800 9096700 14096 1682 14807 61999;62000 52338 52338 1 0 982370 1614200 VDHHVFISNR DGLQCVLCVGLQFGKVDHHVFISNRNKAIL LQFGKVDHHVFISNRNKAILQLDSPESAQS K V D N R N 0 1 1 1 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 2 0 0 10 0 1222.6207 Q14966 Q14966 1034 1043 ZNF638 Zinc finger protein 638 yes yes 3 0.0033901 83.862 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 11403000 0 3361300 8042000 14097 1324 14808 62001;62002;62003 52339;52340 52340 2 0 1614900 1732800 VDIDAPDVDVHGPDWHLK DVTVPKLEGELKGPKVDIDAPDVDVHGPDW DAPDVDVHGPDWHLKMPKMKMPKFSVPGFK K V D L K M 1 0 0 5 0 0 0 1 2 1 1 1 0 0 2 0 0 1 0 3 0 0 18 0 2026.9749 Q09666 Q09666 731 748 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 4 0.04473 32.121 By MS/MS 1.5 0.5 1 1 2 12199000 0 0 12199000 14098 1190 14809 62004;62005 52341 52341 1 0 0 2661400 VDIETPNLEGTLTGPR QGDVKGPQVALKGSRVDIETPNLEGTLTGP DIETPNLEGTLTGPRLGSPSGKTGTCRISM R V D P R L 0 1 1 1 0 0 2 2 0 1 2 0 0 0 2 0 3 0 0 1 0 0 16 0 1710.8788 Q09666 Q09666 541 556 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.0047455 81.709 By MS/MS 1 0 1 1 3670700 0 3670700 0 14099 1190 14810 62006 52342 52342 1 0 1794200 0 VDIGDTIIYLVH DLMSKKIHLTENGIRVDIGDTIIYLVH___ GIRVDIGDTIIYLVH_______________ R V D V H - 0 0 0 2 0 0 0 1 1 3 1 0 0 0 0 0 1 0 1 2 0 0 12 0 1356.7289 Q9P2J5 Q9P2J5 1165 1176 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.035048 77.058 By MS/MS 2 0 1 1 1908600 0 1908600 0 14100 2124 14811 62007 52343 52343 1 0 859480 0 VDILYNNIK AHVNGFRFTSVRGDKVDILYNNIKHALFQP SVRGDKVDILYNNIKHALFQPCDGEMIIVL K V D I K H 0 0 2 1 0 0 0 0 0 2 1 1 0 0 0 0 0 0 1 1 0 0 9 0 1090.6023 Q9Y5B9 Q9Y5B9 697 705 SUPT16H FACT complex subunit SPT16 yes yes 2 0.013069 86.794 By MS/MS 1.5 0.5 1 1 2 20702000 0 0 20702000 14101 2296 14812 62008;62009 52344;52345 52344 2 0 0 4556200 VDIRPQLLK SLIRKYVSQYYPKLRVDIRPQLLKNALQRA YYPKLRVDIRPQLLKNALQRAVERGQLEQI R V D L K N 0 1 0 1 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 1 0 0 9 1 1080.6655 Q5SSJ5 Q5SSJ5 294 302 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.071077 89.542 By MS/MS 3 0 1 1 27597000 0 27597000 0 14102 1445 14813 62010 52346 52346 1 0 11765000 0 VDKAAAAAAALQAK RRNTILRQARNHKLRVDKAAAAAAALQAKS RVDKAAAAAAALQAKSDEKAAVAGKKPVVG R V D A K S 8 0 0 1 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 14 1 1297.7354 P36578 P36578 351 364 RPL4 60S ribosomal protein L4 yes yes 2;3 0.012126 95.094 By MS/MS 4.5 0.5 2 2 4 17540000 0 17540000 0 14103 762 14814 62011;62012;62013;62014 52347;52348 52347 2 0 5005600 0 VDKLDASESLR AMPYFIQVMKEYLTKVDKLDASESLRKEEE YLTKVDKLDASESLRKEEEQATETQPIVYG K V D L R K 1 1 0 2 0 0 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 11 1 1231.6408 Q00610 Q00610 1610 1620 CLTC Clathrin heavy chain 1 yes yes 3 0.0050135 83.182 By MS/MS By MS/MS 2 1.1 2 2 1 2 3 88601000 0 30542000 58059000 14104 1125 14815 62015;62016;62017;62018;62019 52349;52350;52351;52352 52352 4 0 14326000 12540000 VDKLDASESLRK AMPYFIQVMKEYLTKVDKLDASESLRKEEE LTKVDKLDASESLRKEEEQATETQPIVYGQ K V D R K E 1 1 0 2 0 0 1 0 0 0 2 2 0 0 0 2 0 0 0 1 0 0 12 2 1359.7358 Q00610 Q00610 1610 1621 CLTC Clathrin heavy chain 1 yes yes 3 0.0077993 81.377 By MS/MS 1.5 0.5 1 1 2 6244900 0 0 6244900 14105 1125 14816 62020;62021 52353 52353 1 0 0 1352400 VDLHLPR KLMEWTSLQNMRETRVDLHLPRFKVEESYD LQNMRETRVDLHLPRFKVEESYDLKDTLRT R V D P R F 0 1 0 1 0 0 0 0 1 0 2 0 0 0 1 0 0 0 0 1 0 0 7 0 848.48684 P29508 P29508 280 286 SERPINB3 Serpin B3 yes yes 2 0.036428 86.866 By MS/MS 9 0 1 1 11569000 11569000 0 0 14106 700 14817 62022 52354 52354 1 6493800 0 0 VDLLNQEIEFLK DVDNAYMIKVELQSKVDLLNQEIEFLKVLY QSKVDLLNQEIEFLKVLYDAEISQIHQSVT K V D L K V 0 0 1 1 0 1 2 0 0 1 3 1 0 1 0 0 0 0 0 1 0 0 12 0 1459.7922 CON__P35908;CON__P35908v2;P35908 CON__P35908 309 320 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 3.1309E-35 215.87 By MS/MS By MS/MS By MS/MS 5.52 2.87 3 3 3 2 3 3 3 4 2 3 11 8 10 5898100000 3323800000 104320000 2469900000 + 14107 65;66 14818 62023;62024;62025;62026;62027;62028;62029;62030;62031;62032;62033;62034;62035;62036;62037;62038;62039;62040;62041;62042;62043;62044;62045;62046;62047;62048;62049;62050;62051 52355;52356;52357;52358;52359;52360;52361;52362;52363;52364;52365;52366;52367;52368;52369;52370;52371;52372;52373;52374;52375;52376;52377;52378;52379;52380;52381;52382;52383;52384;52385;52386;52387;52388;52389;52390;52391;52392;52393;52394;52395;52396;52397;52398;52399 52362 45 2841700000 59845000 466050000 VDLNEEETILIIR FEQWFNAPFAMTGEKVDLNEEETILIIRRL EKVDLNEEETILIIRRLHKVLRPFLLRRLK K V D I R R 0 1 1 1 0 0 3 0 0 3 2 0 0 0 0 0 1 0 0 1 0 0 13 0 1555.8457 P51531;P51532 P51532 954 966 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2 0.00012197 152.04 By MS/MS 2 0.816 1 1 1 3 14469000 0 0 14469000 14108 894;893 14819 62052;62053;62054 52400 52400 1 0 0 3134500 VDLQSLPTR VENEKINAEKSSKQKVDLQSLPTRAYLDQT KSSKQKVDLQSLPTRAYLDQTVVPILLQGL K V D T R A 0 1 0 1 0 1 0 0 0 0 2 0 0 0 1 1 1 0 0 1 0 0 9 0 1027.5662 Q9C005 Q9C005 46 54 DPY30 Protein dpy-30 homolog yes yes 2 1.5446E-05 127.02 By MS/MS By MS/MS 8.8 0.748 2 2 1 2 3 30294000 0 11625000 18669000 14109 1948 14820 62055;62056;62057;62058;62059 52401;52402;52403;52404 52401 3 0 8052100 8706200 VDLSFSPSQSLPASHAHLR GDSAKYDVENCLANKVDLSFSPSQSLPASH FSPSQSLPASHAHLRVTAAPQSVCALRAVD K V D L R V 2 1 0 1 0 1 0 0 2 0 3 0 0 1 2 5 0 0 0 1 0 0 19 0 2048.0439 P01023 P01023 568 586 A2M Alpha-2-macroglobulin yes yes 4 0.0011601 64.83 By MS/MS 9 0 1 1 7672600 7672600 0 0 14110 370 14821 62060 52405 52405 1 4306700 0 0 VDLVDENFTELR KEVLKSEETSKNQIKVDLVDENFTELRGEI QIKVDLVDENFTELRGEIAGPPDTPYEGGR K V D L R G 0 1 1 2 0 0 2 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1448.7147 P61086 P61086 29 40 UBE2K Ubiquitin-conjugating enzyme E2 K yes yes 2 0.0011728 116.23 By MS/MS 7 0 1 1 2078900 0 0 2078900 14111 977 14822 62061 52406 52406 1 0 0 368900 VDLVLLGK LQVARVLAKLAEKEKVDLVLLGKQAIDDDC KLAEKEKVDLVLLGKQAIDDDCNQTGQMTA K V D G K Q 0 0 0 1 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 2 0 0 8 0 855.54295 P38117 P38117 117 124 ETFB Electron transfer flavoprotein subunit beta yes yes 2 0.061956 69.998 By MS/MS 7 0 1 1 1334600 0 1334600 0 14112 770 14823 62062 52407 52407 1 0 766320 0 VDMKEEPLAVSK TSRSSKQRLKIPLVKVDMKEEPLAVSKLTR LVKVDMKEEPLAVSKLTRTSGETTQTHTEP K V D S K L 1 0 0 1 0 0 2 0 0 0 1 2 1 0 1 1 0 0 0 2 0 0 12 1 1344.6959 P46013 P46013 2489 2500 MKI67 Antigen KI-67 yes yes 2;3 0.0031984 127.56 By MS/MS By MS/MS 1.6 0.8 3 1 1 1 4 42399000 0 3445900 38953000 14113 821 14824 62063;62064;62065;62066;62067 52408;52409;52410 52410 2 0 1684300 8383400 VDMMDLPR ______________________________ ______________________________ M V D P R S 0 1 0 2 0 0 0 0 0 0 1 0 2 0 1 0 0 0 0 1 0 0 8 0 975.45177 P35244 P35244 2 9 RPA3 Replication protein A 14 kDa subunit yes yes 2 0.018548 75.854 By MS/MS 9 0 1 1 7313300 0 0 7313300 14114 743 14825 62068 52411 52411 1 0 0 2336200 VDNALQSGNSQESVTEQDSK LLNNFYPREAKVQWKVDNALQSGNSQESVT QSGNSQESVTEQDSKDSTYSLSSTLTLSKA K V D S K D 1 0 2 2 0 3 2 1 0 0 1 1 0 0 0 4 1 0 0 2 0 0 20 0 2134.9614 P01834;P0DOX7 P01834 43 62 IGKC Ig kappa chain C region no no 2;3 9.3571E-121 266.85 By MS/MS 5.53 2.9 2 2 2 2 2 1 2 2 15 195450000 195450000 0 0 14115 380;504 14826 62069;62070;62071;62072;62073;62074;62075;62076;62077;62078;62079;62080;62081;62082;62083 52412;52413;52414;52415;52416;52417;52418;52419;52420;52421 52418 10 156060000 0 0 VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSK LLNNFYPREAKVQWKVDNALQSGNSQESVT KDSTYSLSSTLTLSKADYEKHKVYACEVTH K V D S K A 1 0 2 3 0 3 2 1 0 0 4 2 0 0 0 9 4 0 1 2 0 0 34 1 3618.7021 P01834;P0DOX7 P01834 43 76 IGKC Ig kappa chain C region no no 3 1.469E-68 170.44 By MS/MS 9 0 1 1 15853000 15853000 0 0 14116 380;504 14827 62084 52422;52423;52424 52423 3 8898600 0 0 VDNAYWLWTFQGR TGRYVVTSVSWWSHKVDNAYWLWTFQGRLL HKVDNAYWLWTFQGRLLQKNNKDRFCQLLW K V D G R L 1 1 1 1 0 1 0 1 0 0 1 0 0 1 0 0 1 2 1 1 0 0 13 0 1654.7892 P55884 P55884 677 689 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 0.00079482 117.25 By MS/MS 2.5 0.5 1 1 2 7495200 0 0 7495200 14117 947 14828 62085;62086 52425 52425 1 0 0 1639100 VDNDENEHQLSLR LFGCELKADKDYHFKVDNDENEHQLSLRTV FKVDNDENEHQLSLRTVSLGAGAKDELHIV K V D L R T 0 1 2 2 0 1 2 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 13 0 1567.7227 P06748 P06748 33 45 NPM1 Nucleophosmin yes yes 2;3 9.0566E-89 257.13 By MS/MS By MS/MS By MS/MS 5.79 1.71 1 1 3 5 7 3 2 2 1 5 18 4353700000 4231800 47638000 4301800000 14118 449 14829 62087;62088;62089;62090;62091;62092;62093;62094;62095;62096;62097;62098;62099;62100;62101;62102;62103;62104;62105;62106;62107;62108;62109;62110 52426;52427;52428;52429;52430;52431;52432;52433;52434;52435;52436;52437;52438;52439;52440;52441;52442;52443;52444;52445;52446;52447;52448;52449;52450 52440 25 5634700 16721000 646890000 VDNEFLNMLLDK FTIKFLKHSALKTPRVDNEFLNMLLDKGAV TPRVDNEFLNMLLDKGAVKTKNCFFEIIKP R V D D K G 0 0 2 2 0 0 1 0 0 0 3 1 1 1 0 0 0 0 0 1 0 0 12 0 1449.7174 Q8IX01 Q8IX01 398 409 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 2 2.2223E-10 123.8 By MS/MS 2 0 1 1 0 0 0 0 14119 1578 14830 62111 52451 52451 1 0 0 0 VDNIQAGELTEGIWR LSRQGIIFKNSKTGKVDNIQAGELTEGIWR VDNIQAGELTEGIWRRVALGHGLKLLTKNG K V D W R R 1 1 1 1 0 1 2 2 0 2 1 0 0 0 0 0 1 1 0 1 0 0 15 0 1699.8529 Q08945 Q08945 40 54 SSRP1 FACT complex subunit SSRP1 yes yes 2 2.3859E-34 208.74 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 118430000 0 9155300 109270000 14120 1186 14831 62112;62113;62114;62115;62116;62117;62118 52452;52453;52454;52455;52456;52457 52456 6 0 4053700 21818000 VDNLTYR YGRPPPDVEGMTSLKVDNLTYRTSPDTLRR VEGMTSLKVDNLTYRTSPDTLRRVFEKYGR K V D Y R T 0 1 1 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 7 0 879.44503 Q01130;Q9BRL6 Q01130 18 24 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 2 0.002381 133.81 By MS/MS By matching 6 0 2 1 1 33061000 0 19332000 13729000 14121 1131 14832 62119;62120 52458 52458 1 0 6692100 2054000 VDNMIIQSISLLDQLDK GHSYSRAKVKFNVNRVDNMIIQSISLLDQL NMIIQSISLLDQLDKDINTFSMRVREWYGY R V D D K D 0 0 1 3 0 2 0 0 0 3 3 1 1 0 0 2 0 0 0 1 0 0 17 0 1944.0238 O00567 O00567 164 180 NOP56 Nucleolar protein 56 yes yes 2;3 1.0326E-05 113.76 By MS/MS 2.83 1.07 1 1 2 2 6 24317000 0 0 24317000 14122 130 14833 62121;62122;62123;62124;62125;62126 52459;52460;52461;52462 52459 4 0 0 4540900 VDNMIIQSISLLDQLDKDINTFSMR GHSYSRAKVKFNVNRVDNMIIQSISLLDQL LLDQLDKDINTFSMRVREWYGYHFPELVKI R V D M R V 0 1 2 4 0 2 0 0 0 4 3 1 2 1 0 3 1 0 0 1 0 0 25 1 2908.4674 O00567 O00567 164 188 NOP56 Nucleolar protein 56 yes yes 3 1.9441E-05 68.375 By MS/MS 2 0 1 1 596440 0 0 596440 14123 130 14834 62127 52463 52463 1 0 0 134780 VDPALFPPVPLFTAVPSR GLVLPDIGVEGSEQKVDPALFPPVPLFTAV ALFPPVPLFTAVPSRSFFPRGFLWDEGFHQ K V D S R S 2 1 0 1 0 0 0 0 0 0 2 0 0 2 5 1 1 0 0 3 0 0 18 0 1922.0666 Q13724 Q13724 424 441 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2;3 0.00017868 90.379 By MS/MS By MS/MS 2.75 0.968 1 2 3 2 7 1 20128000 0 18017000 2110500 14124 1266 14835 62128;62129;62130;62131;62132;62133;62134;62135 52464;52465;52466;52467;52468 52466 5 0 7853100 409330 VDPEIQNVK EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ QPLNVKVDPEIQNVKAQEREQIKTLNNKFA K V D V K A 0 0 1 1 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 9 0 1040.5502 CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5 CON__P35908 173 181 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.00038883 130.22 By MS/MS By MS/MS By MS/MS 4.42 2.52 3 4 3 3 3 3 2 1 1 1 9 8 7 6383800000 5140500000 143150000 1100100000 + 14125 65;66;86 14836 62136;62137;62138;62139;62140;62141;62142;62143;62144;62145;62146;62147;62148;62149;62150;62151;62152;62153;62154;62155;62156;62157;62158;62159 52469;52470;52471;52472;52473;52474;52475;52476;52477;52478;52479;52480;52481;52482;52483;52484;52485;52486;52487 52477 19 5210300000 113550000 200230000 VDPEIQNVKAQER EVSVNQSLLQPLNVKVDPEIQNVKAQEREQ VKVDPEIQNVKAQEREQIKTLNNKFASFID K V D E R E 1 1 1 1 0 2 2 0 0 1 0 1 0 0 1 0 0 0 0 2 0 0 13 1 1524.7896 CON__P35908;CON__P35908v2;P35908 CON__P35908 173 185 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 0.0036102 74.76 By MS/MS 9 0 1 1 0 0 0 0 + 14126 65;66 14837 62160 52488 52488 1 0 0 0 VDPSQPIDLTQLVNGR PLSLNRLQYLIDLGRVDPSQPIDLTQLVNG DPSQPIDLTQLVNGRGVTIQPLKRDYGVQL R V D G R G 0 1 1 2 0 2 0 1 0 1 2 0 0 0 2 1 1 0 0 2 0 0 16 0 1750.9214 Q9P015 Q9P015 110 125 MRPL15 39S ribosomal protein L15, mitochondrial yes yes 2 4.6474E-05 136.7 By MS/MS By MS/MS 6 0 2 1 1 8918600 0 2410900 6507700 14127 2110 14838 62161;62162 52489;52490 52489 2 0 834580 973620 VDPTVENEETFMNR STSETPQPPRKKRARVDPTVENEETFMNRV RVDPTVENEETFMNRVEVKVKIPEELKPWL R V D N R V 0 1 2 1 0 0 3 0 0 0 0 0 1 1 1 0 2 0 0 2 0 0 14 0 1679.7461 Q9UBU8 Q9UBU8 179 192 MORF4L1 Mortality factor 4-like protein 1 yes yes 2 0.00037606 130.23 By MS/MS 5 0 1 1 8935100 0 0 8935100 14128 2135 14839 62163 52491 52491 1 0 0 1246300 VDPVNFK GALSELSDLHAHKLRVDPVNFKLLSHSLLV DLHAHKLRVDPVNFKLLSHSLLVTLASHLP R V D F K L 0 0 1 1 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 2 0 0 7 0 817.4334 P69905;P02008;CON__P01966 CON__P01966 94 100 HBA1;HBZ Hemoglobin subunit alpha;Hemoglobin subunit zeta no no 2 0.017096 107.74 By MS/MS By MS/MS By MS/MS 8.62 1.41 1 1 1 2 3 3 3 2 1362900000 779910000 77137000 505900000 + 14129 34;1082 14840 62164;62165;62166;62167;62168;62169;62170;62171 52492;52493;52494;52495;52496;52497;52498;52499;52500;52501 52500 10 1003800000 333400000 932720000 VDQIQEIVTGNPTVIK LRLFKTALQEEIKSKVDQIQEIVTGNPTVI DQIQEIVTGNPTVIKMVVSFNRGARGQNAL K V D I K M 0 0 1 1 0 2 1 1 0 3 0 1 0 0 1 0 2 0 0 3 0 0 16 0 1752.9622 P46940 P46940 1038 1053 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2;3 5.7821E-05 143.76 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 39175000 0 31510000 7665300 14130 835 14841 62172;62173;62174;62175 52502;52503;52504;52505 52503 4 0 14297000 1732200 VDQMEGGAAGPSASVR NLRELTTLLQKLQARVDQMEGGAAGPSASV DQMEGGAAGPSASVRDAVGQPPRETDFMAF R V D V R D 3 1 0 1 0 1 1 3 0 0 0 0 1 0 1 2 0 0 0 2 0 0 16 0 1530.7097 O94901 O94901 424 439 SUN1 SUN domain-containing protein 1 yes yes 2 4.3335E-05 82.543 By MS/MS 1 0 1 1 0 0 0 0 14131 303 14842 62176 52506 52506 1 0 0 0 VDREQLVQK ______________________________ ______________________________ M V D Q K A 0 1 0 1 0 2 1 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 9 1 1113.6142 P61981 P61981 2 10 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 0.021982 69.628 By MS/MS 6.5 0.5 1 1 2 25456000 0 25456000 0 14132 1003 14843 62177;62178 52507 52507 1 0 13501000 0 VDSLLENLEK DLQAIKKELTQIKQKVDSLLENLEKIEKEQ QIKQKVDSLLENLEKIEKEQSKQAVEMKND K V D E K I 0 0 1 1 0 0 2 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 10 0 1158.6132 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 207 216 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2 0.00077275 113.74 By matching By MS/MS 5 1 2 2 2 2 98260000 0 24761000 73500000 14133 467 14844 62179;62180;62181;62182 52508;52509 52509 2 0 8550700 11118000 VDSLLHGTFSAK PKSFLSGLYEFPLNKVDSLLHGTFSAKMLS LNKVDSLLHGTFSAKMLSSEPKDSALVEES K V D A K M 1 0 0 1 0 0 0 1 1 0 2 1 0 1 0 2 1 0 0 1 0 0 12 0 1273.6667 Q9UJA5 Q9UJA5 262 273 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2 1.4523E-05 155.26 By MS/MS 4 0 1 1 19593000 0 19593000 0 14134 2168 14845 62183 52510 52510 1 0 6502100 0 VDSLNDEINFLK DVDAAYLNKVELEAKVDSLNDEINFLKVLY EAKVDSLNDEINFLKVLYDAELSQMQTHVS K V D L K V 0 0 2 2 0 0 1 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1405.7089 CON__P19013;P19013 CON__P19013 336 347 KRT4 Keratin, type II cytoskeletal 4 yes no 2 4.6264E-85 196.88 By MS/MS 1 0 1 1 0 0 0 0 + 14135 61 14846 62184 52511 52511 1 0 0 0 VDSQASITQDSDSIK RPALMVSIDLHQAGRVDSQASITQDSDSIK VDSQASITQDSDSIKKPEEIKQCNDAPVSV R V D I K K 1 0 0 3 0 2 0 0 0 2 0 1 0 0 0 4 1 0 0 1 0 0 15 0 1592.753 Q6KC79 Q6KC79 551 565 NIPBL Nipped-B-like protein yes yes 2 0.00057889 106.26 By MS/MS 1 0 1 1 9562700 0 0 9562700 14136 1480 14847 62185 52512 52512 1 0 0 2060400 VDSVPDVSPAPSPAGIPHGSQTIGNHFQR QMYYQQQPVSTSVVRVDSVPDVSPAPSPAG GIPHGSQTIGNHFQRTPVANQSSNLTATQM R V D Q R T 2 1 1 2 0 2 0 3 2 2 0 0 0 1 5 4 1 0 0 3 0 0 29 0 2966.4635 Q68CP9 Q68CP9 624 652 ARID2 AT-rich interactive domain-containing protein 2 yes yes 4 0.0018047 35.678 By MS/MS 1.5 0.5 1 1 2 14739000 0 0 14739000 14137 1467 14848 62186;62187 52513 52513 1 0 0 3253700 VDTLTGEVNFLK DVDAAYVSKVDLESRVDTLTGEVNFLKYLF ESRVDTLTGEVNFLKYLFLTELSQVQTHIS R V D L K Y 0 0 1 1 0 0 1 1 0 0 2 1 0 1 0 0 2 0 0 2 0 0 12 0 1334.7082 CON__Q7Z794;Q7Z794 CON__Q7Z794 289 300 KRT77 Keratin, type II cytoskeletal 1b yes no 2 1.1875E-12 183.67 By MS/MS By MS/MS 6.09 3.12 2 1 1 1 2 1 1 2 8 3 86032000 77071000 0 8961100 + 14138 95 14849 62188;62189;62190;62191;62192;62193;62194;62195;62196;62197;62198 52514;52515;52516;52517;52518;52519 52516 6 76839000 0 3682500 VDTMIVQAISLLDDLDK AHSLSRYRLKFSADKVDTMIVQAISLLDDL TMIVQAISLLDDLDKELNNYIMRCREWYGW K V D D K E 1 0 0 4 0 1 0 0 0 2 3 1 1 0 0 1 1 0 0 2 0 0 17 0 1887.9863 Q9Y2X3 Q9Y2X3 158 174 NOP58 Nucleolar protein 58 yes yes 2 0.0036144 78.486 By MS/MS 3.5 0.5 1 1 2 1787500 0 0 1787500 14139 2254 14850 62199;62200 52520 52520 1 0 0 303930 VDTVNHLADELINSGHSDAATIAEWK FREFARDTGNIGQERVDTVNHLADELINSG INSGHSDAATIAEWKDGLNEAWADLLELID R V D W K D 4 0 2 3 0 0 2 1 2 2 2 1 0 0 0 2 2 1 0 2 0 0 26 0 2805.357 Q01082 Q01082 1755 1780 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 3;4 6.7482E-120 252.11 By MS/MS 1.33 0.471 2 1 3 42437000 0 0 42437000 14140 1128 14851 62201;62202;62203 52521;52522 52522 2 0 0 9161300 VDVADQAQDKDRDDR ALSLNEESLGNRRIRVDVADQAQDKDRDDR VDVADQAQDKDRDDRSFGRDRNRDSDKTDT R V D D R S 2 2 0 6 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 15 2 1744.7976 P23588 P23588 168 182 EIF4B Eukaryotic translation initiation factor 4B yes yes 3 0.012645 62.357 By MS/MS By MS/MS 4 1.22 2 1 1 1 3 8221400 0 3285000 4936500 14141 646 14852 62204;62205;62206;62207 52523;52524 52524 2 0 1400400 889100 VDVDVPDVNIEGPDAK DVNLPKADLDVSGPKVDVDVPDVNIEGPDA DVDVPDVNIEGPDAKLKGPKFKMPEMNIKA K V D A K L 1 0 1 4 0 0 1 1 0 1 0 1 0 0 2 0 0 0 0 4 0 0 16 0 1680.8206 Q09666 Q09666 3186 3201 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 3.4278E-05 127.37 By MS/MS 1 0 1 1 8454300 0 0 8454300 14142 1190 14853 62208 52525 52525 1 0 0 1821600 VDVEALENSAGATYIR ALSKHLPSSDSMSLKVDVEALENSAGATYI DVEALENSAGATYIRKKGGKVTGDSQPKEQ K V D I R K 3 1 1 1 0 0 2 1 0 1 1 0 0 0 0 1 1 0 1 2 0 0 16 0 1706.8475 O76094 O76094 516 531 SRP72 Signal recognition particle subunit SRP72 yes yes 2 1.5647E-06 162.49 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 23420000 0 3071400 20349000 14143 296 14854 62209;62210;62211 52526;52527 52527 2 0 1309300 4191100 VDVEVPDVSLEGPEGK DVNLPKADIDVSGPKVDVEVPDVSLEGPEG DVEVPDVSLEGPEGKLKGPKFKMPEMHFKA K V D G K L 0 0 0 2 0 0 3 2 0 0 1 1 0 0 2 1 0 0 0 4 0 0 16 0 1667.8254 Q09666 Q09666 1290 1305 AHNAK Neuroblast differentiation-associated protein AHNAK yes no 2 4.3303E-05 135.6 By MS/MS 1.5 0.5 1 1 2 6458500 0 6458500 0 14144 1190 14855 62212;62213 52528 52528 1 0 3100500 0 VDVFTNLGYR APECKVLTAAGNSCRVDVFTNLGYRAFSLS GNSCRVDVFTNLGYRAFSLSF_________ R V D Y R A 0 1 1 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 1 2 0 0 10 0 1182.6033 Q86W42 Q86W42 326 335 THOC6 THO complex subunit 6 homolog yes yes 2 1.3494E-38 210.1 By MS/MS By MS/MS 4.57 1.5 1 1 1 1 3 2 5 70289000 0 7775700 62513000 14145 1555 14856 62214;62215;62216;62217;62218;62219;62220 52529;52530;52531 52529 3 0 2791600 9703400 VDVGKDQEFTVK SLDLSKIKVSGLGEKVDVGKDQEFTVKSKG GEKVDVGKDQEFTVKSKGAGGQGKVASKIV K V D V K S 0 0 0 2 0 1 1 1 0 0 0 2 0 1 0 0 1 0 0 3 0 0 12 1 1363.6983 P21333 P21333 983 994 FLNA Filamin-A yes yes 2;3 0.00039434 146.16 By MS/MS By matching 1.8 0.748 2 2 1 3 2 49570000 0 45667000 3902300 14146 623 14857 62221;62222;62223;62224;62225 52532;52533 52532 2 0 22265000 831420 VDVSAPDVEAHGPEWNLK EGKVKVPEVDVRGPKVDVSAPDVEAHGPEW SAPDVEAHGPEWNLKMPKMKMPTFSTPGAK K V D L K M 2 0 1 2 0 0 2 1 1 0 1 1 0 0 2 1 0 1 0 3 0 0 18 0 1961.9483 Q09666 Q09666 610 627 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 3 0.014647 45.608 By MS/MS 1 0 1 1 3423200 0 3423200 0 14147 1190 14858 62226 52534 52534 1 0 1673200 0 VDVYIQVDSR V D S R 0 1 0 2 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 3 0 0 10 0 1192.6088 REV__P09913 yes yes 2 0.0066758 94.302 By MS/MS By matching 6 0 3 2 1 172540000 150710000 0 21834000 + 14148 2327 14859 62227;62228;62229 52535 52535 1 200670000 0 3266500 VDWLTEK LTITQAVIFCNTKRKVDWLTEKMREANFTV IFCNTKRKVDWLTEKMREANFTVSSMHGDM K V D E K M 0 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 1 1 0 1 0 0 7 0 889.45453 P38919;P60842;Q14240 P38919 290 296 EIF4A3;EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.018415 105.39 By MS/MS 5 0 1 1 2769300 0 2769300 0 14149 775;967;1294 14860 62230 52536 52536 1 0 713840 0 VDYKADEWLMK LKDKADFCIIHYAGKVDYKADEWLMKNMDP YAGKVDYKADEWLMKNMDPLNDNIATLLHQ K V D M K N 1 0 0 2 0 0 1 0 0 0 1 2 1 0 0 0 0 1 1 1 0 0 11 1 1396.6697 P35579;P35580 P35579 577 587 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 0.0021004 92.866 By MS/MS 2 0.816 1 1 1 3 41372000 0 41372000 0 14150 752;753 14861 62231;62232;62233 52537;52538 52537 2 0 20091000 0 VDYSGGFEPFSVLR LGNSHQPEKPLVRLRVDYSGGFEPFSVLRF RVDYSGGFEPFSVLRFSQKFVDRVANPKDI R V D L R F 0 1 0 1 0 0 1 2 0 0 1 0 0 2 1 2 0 0 1 2 0 0 14 0 1571.762 P49959 P49959 367 380 MRE11A Double-strand break repair protein MRE11A yes yes 2 0.0019002 103.43 By MS/MS 3 0 1 1 17073000 0 0 17073000 14151 875 14862 62234 52539 52539 1 0 0 3311300 VDYYEVLGVQR ______________________________ ______________________________ M V D Q R H 0 1 0 1 0 1 1 1 0 0 1 0 0 0 0 0 0 0 2 3 0 0 11 0 1339.6772 O75190 O75190 2 12 DNAJB6 DnaJ homolog subfamily B member 6 yes yes 2 0.048479 74.173 By MS/MS 7 0 1 1 2625100 0 2625100 0 14152 247 14863 62235 52540 52540 1 0 1507300 0 VEAAEIVEGEDSAYSVR SSQDMTAQVTSPSGKVEAAEIVEGEDSAYS AAEIVEGEDSAYSVRFVPQEMGPHTVAVKY K V E V R F 3 1 0 1 0 0 4 1 0 1 0 0 0 0 0 2 0 0 1 3 0 0 17 0 1822.8585 Q14315 Q14315 2261 2277 FLNC Filamin-C yes yes 2 4.7905E-09 166.48 By MS/MS 1 0 1 1 4738800 0 4738800 0 14153 1298 14864 62236 52541 52541 1 0 2316300 0 VEADRPGK ______________________________ ______________________________ M V E G K L 1 1 0 1 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 8 1 870.45593 P38159;O75526;Q96E39 P38159 2 9 RBMX;RBMXL2;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2;RNA binding motif protein, X-linked-like-1 no no 2 0.0063338 87.181 By MS/MS By MS/MS 4.67 0.471 1 2 2 1 9402600 0 370230 9032400 14154 771;1772 14865 62237;62238;62239 52542;52543 52542 2 0 122860 1259900 VEAEGQLQQLR VQTLRGEVADLELQRVEAEGQLQQLREVLR ELQRVEAEGQLQQLREVLRQRQEGEAAALN R V E L R E 1 1 0 0 0 3 2 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 11 0 1269.6677 Q5TZA2 Q5TZA2 1806 1816 CROCC Rootletin yes yes 2 1.481E-35 207.73 By MS/MS 1 0 1 1 8698000 0 0 8698000 14155 1458 14866 62240 52544 52544 1 0 0 1874100 VEAGDVIYIEANSGAVK LKLDPSIFESLQKERVEAGDVIYIEANSGA AGDVIYIEANSGAVKRQGRCDTYATEFDLE R V E V K R 3 0 1 1 0 0 2 2 0 2 0 1 0 0 0 1 0 0 1 3 0 0 17 0 1733.8836 Q9Y265 Q9Y265 185 201 RUVBL1 RuvB-like 1 yes yes 2 9.1534E-06 119.01 By MS/MS 4 0 1 1 10662000 0 0 10662000 14156 2234 14867 62241 52545 52545 1 0 0 1741400 VEAKFINYVK AKMQASIEKGGSLPKVEAKFINYVKNCFRM GSLPKVEAKFINYVKNCFRMTDQEAIQDLW K V E V K N 1 0 1 0 0 0 1 0 0 1 0 2 0 1 0 0 0 0 1 2 0 0 10 1 1209.6758 P06748 P06748 264 273 NPM1 Nucleophosmin yes yes 3 0.02415 63.283 By MS/MS By matching 6 0 2 1 1 10135000 0 3940400 6194400 14157 449 14868 62242;62243 52546 52546 1 0 1364000 926750 VEAKPEVQSQPPR SGIPPHVKAPVSQPRVEAKPEVQSQPPRVR PRVEAKPEVQSQPPRVREQRPRERPGFPPR R V E P R V 1 1 0 0 0 2 2 0 0 0 0 1 0 0 3 1 0 0 0 2 0 0 13 1 1463.7732 Q9UN86 Q9UN86 278 290 G3BP2 Ras GTPase-activating protein-binding protein 2 yes yes 3 0.0081864 73.273 By MS/MS By MS/MS 3.8 0.748 2 2 1 2 3 31995000 0 7889600 24106000 14158 2203 14869 62244;62245;62246;62247;62248 52547;52548;52549 52548 3 0 2843400 4353200 VEALPEQVAPESR YTMYSMMNVGQTAEKVEALPEQVAPESRNR EKVEALPEQVAPESRNRIRVRQDLASLPAE K V E S R N 2 1 0 0 0 1 3 0 0 0 1 0 0 0 2 1 0 0 0 2 0 0 13 0 1423.7307 Q96RE7 Q96RE7 319 331 NACC1 Nucleus accumbens-associated protein 1 yes yes 2 0.00030284 129.89 By MS/MS 6 0 1 1 8549400 0 0 8549400 14159 1829 14870 62249 52550 52550 1 0 0 1279100 VEALTKEELEFEVPFR MRHKLKTAFKNFIEKVEALTKEELEFEVPF EALTKEELEFEVPFRDLGFNGAPYRSTCLL K V E F R D 1 1 0 0 0 0 5 0 0 0 2 1 0 2 1 0 1 0 0 2 0 0 16 1 1934.9989 Q9Y5B9 Q9Y5B9 787 802 SUPT16H FACT complex subunit SPT16 yes yes 2;3 3.3842E-25 198.55 By MS/MS 1.5 0.5 2 2 4 54762000 0 0 54762000 14160 2296 14871 62250;62251;62252;62253 52551;52552;52553;52554 52552 4 0 0 12190000 VEAQLQELQVK VLLQGKGDSEHKRKKVEAQLQELQVKFNEG KRKKVEAQLQELQVKFNEGERVRTELADKV K V E V K F 1 0 0 0 0 3 2 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 11 0 1283.7085 P35579 P35579 1250 1260 MYH9 Myosin-9 yes yes 2 2.8501E-07 159.34 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 148930000 0 126680000 22253000 14161 752 14872 62254;62255;62256 52555;52556 52555 2 0 61917000 4817900 VEDMAELTCLNEASVLHNLK NKDDIQKMNPPKFSKVEDMAELTCLNEASV ELTCLNEASVLHNLKERYYSGLIYTYSGLF K V E L K E 2 0 2 1 1 0 3 0 1 0 4 1 1 0 0 1 1 0 0 2 0 0 20 0 2285.1032 P35579;P35580 P35579 83 102 MYH9;MYH10 Myosin-9;Myosin-10 no no 3 3.2321E-11 115.98 By MS/MS By MS/MS 1 0 3 2 1 34639000 0 13537000 21101000 14162 752;753 14873;14874 62257;62258;62259 52557;52558;52559 52558 364 3 0 6616800 4546600 VEDSTMPIRR IVGAQLIHADKLGEKVEDSTMPIRRTVNST KLGEKVEDSTMPIRRTVNSTRETPPKSKLA K V E R R T 0 2 0 1 0 0 1 0 0 1 0 0 1 0 1 1 1 0 0 1 0 0 10 1 1202.6078 Q5SSJ5 Q5SSJ5 34 43 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.039495 81.548 By MS/MS 3 0 1 1 3627300 0 0 3627300 14163 1445 14875 62260 52560 52560 1 0 0 703530 VEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQR EEEEKEVTPESGPPKVEEADGGLQINVDEE AGEMEQDAQAPDLQRVHKRIQDIVGILRDF K V E Q R V 4 1 1 4 0 4 6 3 0 1 3 0 1 1 4 0 0 0 0 3 0 0 36 0 3905.8265 P46087 P46087 203 238 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase yes yes 3 7.2337E-08 53.728 By MS/MS 2 0 1 1 1050900 0 0 1050900 14164 824 14876 62261 52561 52561 1 0 0 237490 VEEAEGHTEVTEAEGSQGTAEADGPGASSGDEDASGR SVSEMEATGAQGPSRVEEAEGHTEVTEAEG DGPGASSGDEDASGRAASPESASSTPESLQ R V E G R A 6 1 0 3 0 1 8 7 1 0 0 0 0 0 1 4 3 0 0 2 0 0 37 0 3588.4844 Q96BT3 Q96BT3 358 394 CENPT Centromere protein T yes yes 7 0.071313 0.27587 By MS/MS 1 0 1 1 2458500 2458500 0 0 14165 1756 14877 62262 52562 52562 0 2458500 0 0 VEEAEPEEFVVEK TLQKMGKKQNGKSKKVEEAEPEEFVVEKVL KKVEEAEPEEFVVEKVLDRRVVNGKVEYFL K V E E K V 1 0 0 0 0 0 6 0 0 0 0 1 0 1 1 0 0 0 0 3 0 0 13 0 1532.7246 Q13185 Q13185 22 34 CBX3 Chromobox protein homolog 3 yes yes 2 0.00033532 141.1 By matching By MS/MS 7.33 0.471 2 1 1 2 94726000 0 4405200 90321000 14166 1228 14878 62263;62264;62265 52563;52564;52565 52563 3 0 2529500 15905000 VEEAIVAR TQLLINQLWQLPTERVEEAIVARLPEPTTR WQLPTERVEEAIVARLPEPTTRLPREKPLP R V E A R L 2 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 8 0 885.49198 Q15050 Q15050 84 91 RRS1 Ribosome biogenesis regulatory protein homolog yes yes 2 0.0088981 102.71 By MS/MS By MS/MS 5 0 2 1 1 0 0 0 0 14167 1337 14879 62266;62267 52566;52567 52566 2 0 0 0 VEEAQGMMK DVLLQQIEELGSEGKVEEAQGMMKLVEQLK LGSEGKVEEAQGMMKLVEQLKEERELLRST K V E M K L 1 0 0 0 0 1 2 1 0 0 0 1 2 0 0 0 0 0 0 1 0 0 9 0 1021.4573 O95232 O95232 152 160 LUC7L3 Luc7-like protein 3 yes yes 2 0.0293 85.212 By MS/MS 4 0 1 1 0 0 0 0 14168 312 14880 62268 52568 52568 1 0 0 0 VEEEEERNQILQNEK KKQELEEILHDLESRVEEEEERNQILQNEK VEEEEERNQILQNEKKKMQAHIQDLEEQLD R V E E K K 0 1 2 0 0 2 6 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 15 1 1885.9017 P35580 P35580 931 945 MYH10 Myosin-10 yes yes 2;3 7.5496E-05 159.08 By MS/MS By MS/MS 1 0 3 2 1 24116000 0 13737000 10379000 14169 753 14881 62269;62270;62271 52569;52570;52571 52569 3 0 6714300 2236300 VEEEEERNQILQNEKK KKQELEEILHDLESRVEEEEERNQILQNEK EEEEERNQILQNEKKKMQAHIQDLEEQLDE R V E K K K 0 1 2 0 0 2 6 0 0 1 1 2 0 0 0 0 0 0 0 1 0 0 16 2 2013.9967 P35580 P35580 931 946 MYH10 Myosin-10 yes yes 3;4 0.015253 55.66 By MS/MS 1 0 2 2 5590100 0 5590100 0 14170 753 14882 62272;62273 52572;52573 52572 2 0 2732300 0 VEEIAASK GARHRARAHSIQIMKVEEIAASKCRRPAVK HSIQIMKVEEIAASKCRRPAVKQFHDSKIK K V E S K C 2 0 0 0 0 0 2 0 0 1 0 1 0 0 0 1 0 0 0 1 0 0 8 0 845.44945 Q02543 Q02543 129 136 RPL18A 60S ribosomal protein L18a yes yes 2 0.011827 91.516 By MS/MS 7 0 1 1 17242000 0 0 17242000 14171 1147 14883 62274 52574 52574 1 0 0 3059500 VEEITMR DDIDVAQQFSLNQSRVEEITMREEVGNISI QFSLNQSRVEEITMREEVGNISILQENDFG R V E M R E 0 1 0 0 0 0 2 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 7 0 876.4375 O60216 O60216 140 146 RAD21 Double-strand-break repair protein rad21 homolog yes yes 2 0.012186 108.24 By MS/MS 2 0 1 1 0 0 0 0 14172 219 14884 62275 52575 52575 1 0 0 0 VEEQEPELTSTPNFVVEVIK PPTFDGEEEPSQGQKVEEQEPELTSTPNFV PELTSTPNFVVEVIKNDDGKKALVLDCHYP K V E I K N 0 0 1 0 0 1 5 0 0 1 1 1 0 1 2 1 2 0 0 4 0 0 20 0 2286.1631 Q07021 Q07021 155 174 C1QBP Complement component 1 Q subcomponent-binding protein, mitochondrial yes yes 2;3 3.1456E-07 105.79 By MS/MS By MS/MS 6.86 0.639 2 4 1 3 4 79954000 0 3555500 76398000 14173 1175 14885 62276;62277;62278;62279;62280;62281;62282 52576;52577;52578;52579;52580 52579 5 0 1802100 12942000 VEEQGNQMR RLDKIRQQLEEVHAKVEEQGNQMRLQAEAF EEVHAKVEEQGNQMRLQAEAFQARLRSWFE K V E M R L 0 1 1 0 0 2 2 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 9 0 1089.4873 CON__Q03247 CON__Q03247 260 268 yes yes 2 0.00038259 120.92 By MS/MS 6 0 1 1 2085500 0 2085500 0 + 14174 72 14886 62283 52581 52581 1 0 721930 0 VEESGEHVILGTGELYLDCVMHDLR GLRKVNKSYPSLTTKVEESGEHVILGTGEL GTGELYLDCVMHDLRKMYSEIDIKVADPVV K V E L R K 0 1 0 2 1 0 4 3 2 1 4 0 1 0 0 1 1 0 1 3 0 0 25 0 2870.3579 Q15029 Q15029 621 645 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 4 8.3673E-06 72.532 By MS/MS 2 0 1 1 1154300 0 0 1154300 14175 1335 14887 62284 52582 52582 1 0 0 260850 VEFATLQEALAHALTEK AELEMRLQNALNEQRVEFATLQEALAHALT FATLQEALAHALTEKEGKDQELAKLRGLEA R V E E K E 4 0 0 0 0 1 3 0 1 0 3 1 0 1 0 0 2 0 0 1 0 0 17 0 1869.9836 Q14980 Q14980 1043 1059 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 1.9778E-09 171.26 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 131060000 0 3557900 127500000 14176 1327 14888 62285;62286;62287;62288 52583;52584;52585;52586;52587 52586 5 0 1739100 27476000 VEFMDDTSR VLGRTGSQGQCTQVRVEFMDDTSRSIIRNV QCTQVRVEFMDDTSRSIIRNVKGPVREGDV R V E S R S 0 1 0 2 0 0 1 0 0 0 0 0 1 1 0 1 1 0 0 1 0 0 9 0 1098.4652 P62857 P62857 32 40 RPS28 40S ribosomal protein S28 yes yes 2 6.2814E-32 201.97 By matching By MS/MS By MS/MS 9.33 0.745 1 2 3 1 1 4 145880000 571660 30238000 115070000 14177 1041 14889;14890 62289;62290;62291;62292;62293;62294 52588;52589;52590;52591;52592 52591 500 5 490790 152980000 212600000 VEFTFPDFVTEGAR FEANTYQETYKRISRVEFTFPDFVTEGARD RVEFTFPDFVTEGARDLISRLLKHNPSQRP R V E A R D 1 1 0 1 0 0 2 1 0 0 0 0 0 3 1 0 2 0 0 2 0 0 14 0 1613.7726 O14965 O14965 344 357 AURKA Aurora kinase A yes yes 2 0.0076887 84.479 By MS/MS 4.5 0.5 1 1 2 4628800 0 0 4628800 14178 155 14891 62295;62296 52593 52593 1 0 0 679530 VEGELEEMER AKDEELLKVKEKQTKVEGELEEMERKHQQL EKQTKVEGELEEMERKHQQLLEEKNILAEQ K V E E R K 0 1 0 0 0 0 5 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 10 0 1219.5391 P35580 P35580 871 880 MYH10 Myosin-10 yes yes 2 5.2324E-05 149.72 By MS/MS By MS/MS 1.25 0.433 3 1 2 2 44960000 0 11789000 33171000 14179 753 14892;14893 62297;62298;62299;62300 52594;52595;52596 52595 3 0 5762100 7162800 VEGIVHPTTAEIDLK LSLTQSDISHIGSMRVEGIVHPTTAEIDLK VEGIVHPTTAEIDLKEDIGKALEKAGGKEF R V E L K E 1 0 0 1 0 0 2 1 1 2 1 1 0 0 1 0 2 0 0 2 0 0 15 0 1620.8723 Q9P0M6 Q9P0M6 212 226 H2AFY2 Core histone macro-H2A.2 yes yes 2;3 6.2337E-93 198.97 By MS/MS 5 0 2 2 84290000 0 0 84290000 14180 2117 14894 62301;62302 52597;52598 52598 2 0 0 11757000 VEGIVHPTTAEIDLKEDIGK LSLTQSDISHIGSMRVEGIVHPTTAEIDLK HPTTAEIDLKEDIGKALEKAGGKEFLETVK R V E G K A 1 0 0 2 0 0 3 2 1 3 1 2 0 0 1 0 2 0 0 2 0 0 20 1 2163.1423 Q9P0M6 Q9P0M6 212 231 H2AFY2 Core histone macro-H2A.2 yes yes 2;3;4 4.165E-101 252.46 By MS/MS By MS/MS 4.67 0.471 2 4 1 5 119740000 0 9363800 110380000 14181 2117 14895 62303;62304;62305;62306;62307;62308 52599;52600;52601;52602;52603;52604;52605;52606 52606 8 0 2413700 15878000 VEGTEPTTAFNLFVGNLNFNK EMAKQKAAPEAKKQKVEGTEPTTAFNLFVG TTAFNLFVGNLNFNKSAPELKTGISDVFAK K V E N K S 1 0 4 0 0 0 2 2 0 0 2 1 0 3 1 0 3 0 0 2 0 0 21 0 2311.1485 P19338 P19338 298 318 NCL Nucleolin yes yes 2;3 8.845E-121 262.92 By MS/MS By MS/MS 2.17 1.07 4 4 2 2 8 4 194420000 0 102040000 92381000 14182 604 14896 62309;62310;62311;62312;62313;62314;62315;62316;62317;62318;62319;62320 52607;52608;52609;52610;52611;52612;52613;52614;52615;52616;52617;52618;52619;52620;52621 52620 15 0 41713000 20671000 VEHINLHPELDGQEYVVEFDFLGK EEGETADTVGCCSLRVEHINLHPELDGQEY LDGQEYVVEFDFLGKDSIRYYNKVPVEKRV R V E G K D 0 0 1 2 0 1 4 2 2 1 3 1 0 2 1 0 0 0 1 3 0 0 24 0 2826.3865 P11387 P11387 509 532 TOP1 DNA topoisomerase 1 yes yes 3;4 2.3375E-21 136.56 By matching By MS/MS 2 0 3 1 2 129930000 2416100 0 127520000 14183 523 14897 62321;62322;62323 52622;52623;52624 52623 3 2911100 0 28816000 VEHNQSYSQAGITETEWTSGSSK LKGRAKTPVTLKQRRVEHNQSYSQAGITET QAGITETEWTSGSSKGGPLQALTRESTRGS R V E S K G 1 0 1 0 0 2 3 2 1 1 0 1 0 0 0 5 3 1 1 1 0 0 23 0 2525.1306 P42167 P42167 217 239 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 3 7.6636E-30 183.25 By MS/MS 4 0 1 1 32450000 0 0 32450000 14184 799 14898 62324 52625 52625 1 0 0 5300100 VEIAGPGFINVHLR ENITKHLPDNECIEKVEIAGPGFINVHLRK KVEIAGPGFINVHLRKDFVSEQLTSLLVNG K V E L R K 1 1 1 0 0 0 1 2 1 2 1 0 0 1 1 0 0 0 0 2 0 0 14 0 1520.8463 P54136 P54136 154 167 RARS Arginine--tRNA ligase, cytoplasmic yes yes 3 7.2336E-05 127.56 By MS/MS By MS/MS 3 0 2 1 1 10078000 0 3765700 6311900 14185 927 14899 62325;62326 52626;52627 52627 2 0 1605300 1224200 VEILANDQGNR LGTTYSCVGVFQQGRVEILANDQGNRTTPS QQGRVEILANDQGNRTTPSYVAFTDTERLV R V E N R T 1 1 2 1 0 1 1 1 0 1 1 0 0 0 0 0 0 0 0 1 0 0 11 0 1227.6208 P17066;P48741 P17066 28 38 HSPA6;HSPA7 Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7 yes no 2 1.3029E-112 217.36 By matching By MS/MS By MS/MS 5.17 3.13 2 2 3 3 1 1 1 2 3 3 5 10 419900000 6489400 332370000 81036000 14186 582 14900 62327;62328;62329;62330;62331;62332;62333;62334;62335;62336;62337;62338;62339;62340;62341;62342;62343;62344 52628;52629;52630;52631;52632;52633;52634;52635;52636;52637;52638;52639;52640;52641;52642;52643 52637 16 6696500 178660000 60064000 VEIMPPPPKPK YLEKQTGAILPPSPKVEIMPPPPKPKDMTV PSPKVEIMPPPPKPKDMTVPILVSKPPVFT K V E P K D 0 0 0 0 0 0 1 0 0 1 0 2 1 0 5 0 0 0 0 1 0 0 11 1 1231.6999 P11182 P11182 223 233 DBT Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial yes yes 3 0.056949 48.741 By MS/MS 5 0 1 1 3231100 0 3231100 0 14187 519 14901 62345 52644 52644 1 0 832870 0 VELAQLQEEWNEHNAK ERRAKQTELRLLEQKVELAQLQEEWNEHNA ELAQLQEEWNEHNAKIIKYIRTKTKPHLFY K V E A K I 2 0 2 0 0 2 4 0 1 0 2 1 0 0 0 0 0 1 0 1 0 0 16 0 1936.9279 Q9H307 Q9H307 213 228 PNN Pinin yes yes 2;3 1.9764E-59 229.54 By MS/MS By MS/MS 2 0.756 2 3 2 1 6 144400000 0 7618900 136780000 14188 1978 14902 62346;62347;62348;62349;62350;62351;62352 52645;52646;52647;52648 52647 4 0 3430900 30297000 VELDNMPLR GFIRLETRTLAEIAKVELDNMPLRGKQLRV LAEIAKVELDNMPLRGKQLRVRFACHSASL K V E L R G 0 1 1 1 0 0 1 0 0 0 2 0 1 0 1 0 0 0 0 1 0 0 9 0 1085.5539 Q15233 Q15233 127 135 NONO Non-POU domain-containing octamer-binding protein yes yes 2 2.001E-25 186.94 By MS/MS By MS/MS By MS/MS 3.94 1.83 2 2 3 4 2 2 2 1 7 9 1008200000 44488000 356170000 607550000 14189 1351 14903 62353;62354;62355;62356;62357;62358;62359;62360;62361;62362;62363;62364;62365;62366;62367;62368;62369 52649;52650;52651;52652;52653;52654;52655;52656;52657;52658;52659;52660;52661;52662;52663;52664;52665;52666;52667 52660 19 34709000 120380000 100810000 VELQELNDR DAINTEFKNTRTNEKVELQELNDRFANYID TRTNEKVELQELNDRFANYIDKVRFLEQQN K V E D R F 0 1 1 1 0 1 2 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 9 0 1114.5619 P08670;P17661 P08670 105 113 VIM;DES Vimentin;Desmin yes no 2 1.0076E-41 210.37 By MS/MS By MS/MS By MS/MS 4.33 2.94 4 2 2 3 2 1 1 1 2 2 8 8 2069300000 40838000 156210000 1872200000 14190 476 14904 62370;62371;62372;62373;62374;62375;62376;62377;62378;62379;62380;62381;62382;62383;62384;62385;62386;62387 52668;52669;52670;52671;52672;52673;52674;52675;52676;52677;52678;52679;52680 52670 13 33584000 218540000 304200000 VELSNGEK VRELDGRTLCGCRVRVELSNGEKRSRNRGP LCGCRVRVELSNGEKRSRNRGPPPSWGRRP R V E E K R 0 0 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 8 0 874.43961 P84103 P84103 78 85 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 0.00023275 137.18 By MS/MS 7 0 1 1 2919500 0 0 2919500 14191 1113 14905 62388 52681;52682;52683;52684;52685;52686 52683 6 0 0 518050 VELSPMQK DVFKNMPSKTELIVRVELSPMQKKYYKYIL KTELIVRVELSPMQKKYYKYILTRNFEALN R V E Q K K 0 0 0 0 0 1 1 0 0 0 1 1 1 0 1 1 0 0 0 1 0 0 8 0 930.48445 Q14839;Q12873 Q14839 976 983 CHD4;CHD3 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3 no no 2 0.0015912 113.7 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 26668000 0 11452000 15216000 14192 1321;1205 14906 62389;62390;62391 52687;52688 52687 2 0 5531100 3278500 VELSTGMPR VRGLDGKVICGSRVRVELSTGMPRRSRFDR CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V E P R R 0 1 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 1 0 0 9 0 988.50117 Q16629 Q16629 79 87 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2 2.4792E-07 159.04 By MS/MS By MS/MS 7.2 1.47 2 2 1 3 2 159290000 0 52245000 107040000 14193 1392 14907 62392;62393;62394;62395;62396 52689;52690;52691;52692 52692 4 0 19393000 16350000 VELTITPDFQWDEK ELSVHLQPITRSTLKVELTITPDFQWDEKV KVELTITPDFQWDEKVHGSSEAFWILVEDV K V E E K V 0 0 0 2 0 1 2 0 0 1 1 1 0 1 1 0 2 1 0 1 0 0 14 0 1719.8356 O75643 O75643 1200 1213 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00037054 148.28 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 40869000 0 4320700 36549000 14194 277 14908 62397;62398;62399 52693;52694 52694 2 0 2111900 7922600 VELVPPTPAEIPR TYSKPRLATFWYYAKVELVPPTPAEIPRAI AKVELVPPTPAEIPRAIQSLKKIVNSAQTG K V E P R A 1 1 0 0 0 0 2 0 0 1 1 0 0 0 4 0 1 0 0 2 0 0 13 0 1416.7977 O75964 O75964 36 48 ATP5L ATP synthase subunit g, mitochondrial yes yes 2 0.0081602 91.549 By MS/MS By MS/MS 10 0 2 1 1 14049000 0 5523000 8526100 14195 294 14909 62400;62401 52695;52696;52697 52696 3 0 27942000 18647000 VEMLDNLLDIEVAYSLLR KKPPLLNNADSVQAKVEMLDNLLDIEVAYS LDNLLDIEVAYSLLRGGSDDSSKDPIDVNY K V E L R G 1 1 1 2 0 0 2 0 0 1 5 0 1 0 0 1 0 0 1 2 0 0 18 0 2105.1078 P09874 P09874 762 779 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 2.8755E-67 238.63 By MS/MS 1.8 0.4 1 4 5 65755000 0 0 65755000 14196 492 14910;14911 62402;62403;62404;62405;62406 52698;52699;52700;52701 52700 213 4 0 0 14854000 VEMLETER EAATLAANNTQLQARVEMLETERGQQEAKL NTQLQARVEMLETERGQQEAKLLAERGHFE R V E E R G 0 1 0 0 0 0 3 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 8 0 1005.4801 Q14980 Q14980 436 443 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.00025081 135.77 By MS/MS 1 0 1 1 30448000 0 0 30448000 14197 1327 14912 62407 52702 52702 1 0 0 6560400 VEMYSGSDDDDDFNKLPK LEDKDSKSKKTAKPKVEMYSGSDDDDDFNK YSGSDDDDDFNKLPKKAKGKAQKSNKKWDG K V E P K K 0 0 1 5 0 0 1 1 0 0 1 2 1 1 1 2 0 0 1 1 0 0 18 1 2073.8837 O60841 O60841 131 148 EIF5B Eukaryotic translation initiation factor 5B yes yes 3 0.0013577 68.41 By MS/MS 1.5 0.5 1 1 2 21450000 0 0 21450000 14198 236 14913 62408;62409 52703;52704 52704 2 0 0 4749700 VENMVDQLLR DTPLIYKAVPSWFVRVENMVDQLLRNNDLC SWFVRVENMVDQLLRNNDLCYWVPELVREK R V E L R N 0 1 1 1 0 1 1 0 0 0 2 0 1 0 0 0 0 0 0 2 0 0 10 0 1215.6282 P41252 P41252 419 428 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 2 0.00027892 123.35 By MS/MS By matching 2.5 0.5 1 1 1 1 6548400 0 4534300 2014100 14199 796 14914 62410;62411 52705 52705 1 0 2041800 390640 VEPAVSSVVNSIQVLTSK SSPKDKKKKEKKVAKVEPAVSSVVNSIQVL AVSSVVNSIQVLTSKAAILETAPKEVPMVV K V E S K A 1 0 1 0 0 1 1 0 0 1 1 1 0 0 1 4 1 0 0 5 0 0 18 0 1856.0255 Q9P2E9 Q9P2E9 149 166 RRBP1 Ribosome-binding protein 1 yes yes 2 3.3202E-08 114.74 By MS/MS By MS/MS 2.33 0.943 1 2 1 2 8379700 0 1181700 7198000 14200 2122 14915 62412;62413;62414 52706;52707;52708 52706 3 0 503760 1468600 VEPGLGADNSVVR ASKIVGPSGAAVPCKVEPGLGADNSVVRFL CKVEPGLGADNSVVRFLPREEGPYEVEVTY K V E V R F 1 1 1 1 0 0 1 2 0 0 1 0 0 0 1 1 0 0 0 3 0 0 13 0 1311.6783 P21333 P21333 1020 1032 FLNA Filamin-A yes yes 2 0.0020951 108.47 By MS/MS By MS/MS 1 0 2 1 1 47406000 0 28118000 19288000 14201 623 14916 62415;62416 52709;52710;52711 52711 3 0 13744000 4155900 VEPLRAELQEGAR FQKKWQEEMELYRQKVEPLRAELQEGARQK QKVEPLRAELQEGARQKLHELQEKLSPLGE K V E A R Q 2 2 0 0 0 1 3 1 0 0 2 0 0 0 1 0 0 0 0 1 0 0 13 1 1466.7841 P02647 P02647 143 155 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 3 0.00019008 116.84 By MS/MS 9 0 1 1 10034000 10034000 0 0 14202 389 14917 62417 52712 52712 1 5632300 0 0 VEPSDNGPLFTELK NSSESVGSDAPCVVKVEPSDNGPLFTELKF KVEPSDNGPLFTELKFYQRAAKPEQIQKWI K V E L K F 0 0 1 1 0 0 2 1 0 0 2 1 0 1 2 1 1 0 0 1 0 0 14 0 1544.7722 Q99986 Q99986 72 85 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2 0.00041352 147.37 By MS/MS By MS/MS 5.4 1.02 1 2 1 1 1 4 70436000 0 6667000 63769000 14203 1871 14918 62418;62419;62420;62421;62422 52713;52714;52715;52716 52713 4 0 1718500 9264400 VEPVGDVVSTR GKPLKISRRVLRAPKVEPVGDVVSTRDPVK RAPKVEPVGDVVSTRDPVKSQSKSNTSLPP K V E T R D 0 1 0 1 0 0 1 1 0 0 0 0 0 0 1 1 1 0 0 4 0 0 11 0 1156.6088 P46013 P46013 2968 2978 MKI67 Antigen KI-67 yes yes 2 0.0090244 93.111 By MS/MS By MS/MS 1 0 2 1 1 20699000 0 7788900 12910000 14204 821 14919 62423;62424 52717;52718 52717 2 0 3807100 2781800 VEPVGDVVSTRDPVK GKPLKISRRVLRAPKVEPVGDVVSTRDPVK VEPVGDVVSTRDPVKSQSKSNTSLPPLPFK K V E V K S 0 1 0 2 0 0 1 1 0 0 0 1 0 0 2 1 1 0 0 5 0 0 15 1 1595.8519 P46013 P46013 2968 2982 MKI67 Antigen KI-67 yes yes 3 0.0082203 63.682 By MS/MS 1.5 0.5 1 1 2 7158300 0 7158300 0 14205 821 14920 62425;62426 52719 52719 1 0 3368000 0 VEPVGNAPLLALVHK VFFSSPLPGEEPIGRVEPVGNAPLLALVHK VEPVGNAPLLALVHKMNNCLSQMEQFPVKV R V E H K M 2 0 1 0 0 0 1 1 1 0 3 1 0 0 2 0 0 0 0 3 0 0 15 0 1555.9086 Q14669 Q14669 1207 1221 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 3 0.0034656 69.108 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 8734200 0 2466200 6268000 14206 1308 14921 62427;62428;62429 52720;52721 52721 2 0 1205500 1370700 VEPYSLTAQQSSLIR PSRAGSPRRTSKKTKVEPYSLTAQQSSLIR VEPYSLTAQQSSLIREDKSNAKLWNEVLAS K V E I R E 1 1 0 0 0 2 1 0 0 1 2 0 0 0 1 3 1 0 1 1 0 0 15 0 1690.889 Q96T88 Q96T88 671 685 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 1.0216E-17 192.44 By matching By MS/MS By MS/MS 2.33 0.943 1 3 1 1 2 1 3 33146000 3974000 5111400 24061000 14207 1841 14922 62430;62431;62432;62433;62434;62435 52722;52723;52724 52723 3 4506800 2301700 4792700 VEQATKPSFER ARDMNGKSLDGKAIKVEQATKPSFERGRHG KAIKVEQATKPSFERGRHGPPPPPRSRGPP K V E E R G 1 1 0 0 0 1 2 0 0 0 0 1 0 1 1 1 1 0 0 1 0 0 11 1 1290.6568 Q96E39 Q96E39 81 91 RBMXL1 RNA binding motif protein, X-linked-like-1 yes yes 3 0.014438 70.728 By MS/MS By MS/MS 5.75 0.829 2 1 1 3 1 14801000 0 5854900 8946300 14208 1772 14923 62436;62437;62438;62439 52725;52726 52726 2 0 1736200 1247800 VEQATKPSFESGR ARDMNGKSLDGKAIKVEQATKPSFESGRRG IKVEQATKPSFESGRRGPPPPPRSRGPPRG K V E G R R 1 1 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 13 1 1434.7103 P38159 P38159 81 93 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes yes 2;3 5.5982E-33 209.97 By matching By MS/MS By MS/MS 4.83 2.32 4 1 2 2 4 4 4 3 2 9 13 655280000 12449000 152090000 490730000 14209 771 14924 62440;62441;62442;62443;62444;62445;62446;62447;62448;62449;62450;62451;62452;62453;62454;62455;62456;62457;62458;62459;62460;62461;62462;62463 52727;52728;52729;52730;52731;52732;52733;52734;52735;52736;52737;52738;52739;52740;52741;52742;52743;52744;52745 52728 19 12449000 49329000 74597000 VEQATKPSFESGRR ARDMNGKSLDGKAIKVEQATKPSFESGRRG KVEQATKPSFESGRRGPPPPPRSRGPPRGL K V E R R G 1 2 0 0 0 1 2 1 0 0 0 1 0 1 1 2 1 0 0 1 0 0 14 2 1590.8114 P38159 P38159 81 94 RBMX RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed yes yes 3 0.026294 57.434 By MS/MS 6 0.816 1 1 1 3 5424100 0 5424100 0 14210 771 14925 62464;62465;62466 52746;52747;52748 52747 3 0 1902900 0 VEQFLTIAR LSLRRSGRQPKRTERVEQFLTIARRRGRRS PKRTERVEQFLTIARRRGRRSMPVSLEDSG R V E A R R 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 0 9 0 1075.6026 Q9BTC0 Q9BTC0 74 82 DIDO1 Death-inducer obliterator 1 yes yes 2 0.0004762 124.23 By matching By MS/MS By matching 2.67 1.49 2 1 1 1 1 1 2 3 34973000 2125100 8001600 24846000 14211 1900 14926 62467;62468;62469;62470;62471;62472 52749;52750 52750 2 2125100 3780000 5145200 VEQIAAIAQELNELDYYDSHNVNTR KHEAFESDLAAHQDRVEQIAAIAQELNELD LNELDYYDSHNVNTRCQKICDQWDALGSLT R V E T R C 3 1 3 2 0 2 3 0 1 2 2 0 0 0 0 1 1 0 2 2 0 0 25 0 2904.389 O43707 O43707 470 494 ACTN4 Alpha-actinin-4 yes yes 3;4 8.4455E-74 217.94 By MS/MS By MS/MS 1.75 0.433 1 3 1 3 77007000 0 5028300 71979000 14212 210 14927 62473;62474;62475;62476 52751;52752;52753 52751 3 0 2264300 16231000 VEQLGAEGNVEESQK RVHELNEEIGKLLAKVEQLGAEGNVEESQK VEQLGAEGNVEESQKVMDEVEKARAKKREA K V E Q K V 1 0 1 0 0 2 4 2 0 0 1 1 0 0 0 1 0 0 0 2 0 0 15 0 1615.7689 Q9Y383 Q9Y383 140 154 LUC7L2 Putative RNA-binding protein Luc7-like 2 yes yes 2 4.433E-05 159.44 By MS/MS By MS/MS 3.83 1.77 1 1 1 2 1 1 5 117870000 0 2876700 114990000 14213 2259 14928 62477;62478;62479;62480;62481;62482 52754;52755;52756;52757;52758 52757 5 0 741520 17247000 VEQVLSLEPQHELK ______________________________ KVEQVLSLEPQHELKFRGPFTDVVTTNLKL K V E L K F 0 0 0 0 0 2 3 0 1 0 3 1 0 0 1 1 0 0 0 2 0 0 14 0 1647.8832 O95292 O95292 4 17 VAPB Vesicle-associated membrane protein-associated protein B/C yes yes 2;3 0.0035438 93.959 By matching By MS/MS 7 0.632 1 3 1 1 4 52024000 0 2774200 49250000 14214 317 14929 62483;62484;62485;62486;62487 52759;52760;52761 52760 3 0 1593000 8364200 VESHFDLELR GRHSKGVAKTVTKQRVESHFDLELRAAVMH VTKQRVESHFDLELRAAVMHDILDMMPEGI R V E L R A 0 1 0 1 0 0 2 0 1 0 2 0 0 1 0 1 0 0 0 1 0 0 10 0 1243.6197 Q6P2Q9 Q6P2Q9 677 686 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3 0.070537 38.634 By matching By MS/MS 1 0 2 1 1 10986000 1781300 0 9204500 14215 1490 14930 62488;62489 52762 52762 1 1781300 0 1983300 VESLESLYFTPIPAR PGEPASPISQRLPPKVESLESLYFTPIPAR VESLESLYFTPIPARSQAPLESSLDSLGDV K V E A R S 1 1 0 0 0 0 2 0 0 1 2 0 0 1 2 2 1 0 1 1 0 0 15 0 1720.9036 Q14980 Q14980 1767 1781 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 2.8947E-17 185.99 By MS/MS By MS/MS 1 0 3 2 1 29336000 0 9637400 19698000 14216 1327 14931 62490;62491;62492 52763;52764;52765 52765 3 0 4710600 4244300 VESLLVTAISK DPGFAKQKVYNPRIRVESLLVTAISKASAQ PRIRVESLLVTAISKASAQQRAGRAGRTRP R V E S K A 1 0 0 0 0 0 1 0 0 1 2 1 0 0 0 2 1 0 0 2 0 0 11 0 1158.686 O43143 O43143 453 463 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.040234 76.143 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 16012000 0 2627600 13385000 14217 186 14932 62493;62494;62495;62496 52766;52767 52766 2 0 1120100 2575200 VESLQEEIAFLK DVDNASLARLDLERKVESLQEEIAFLKKLH ERKVESLQEEIAFLKKLHEEEIQELQAQIQ K V E L K K 1 0 0 0 0 1 3 0 0 1 2 1 0 1 0 1 0 0 0 1 0 0 12 0 1404.75 P08670 P08670 224 235 VIM Vimentin yes yes 2 8.6526E-08 163.94 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 1 5 282600000 0 10993000 271610000 14218 476 14933 62497;62498;62499;62500;62501;62502 52768;52769;52770;52771;52772 52768 5 0 3648100 43502000 VESLQEEIAFLKK DVDNASLARLDLERKVESLQEEIAFLKKLH RKVESLQEEIAFLKKLHEEEIQELQAQIQE K V E K K L 1 0 0 0 0 1 3 0 0 1 2 2 0 1 0 1 0 0 0 1 0 0 13 1 1532.845 P08670 P08670 224 236 VIM Vimentin yes yes 2;3 0.0023749 104.22 By MS/MS 4 0 2 2 41893000 0 0 41893000 14219 476 14934 62503;62504 52773;52774 52773 2 0 0 6842500 VESLWPIFR KMREAETEPHEGKRKVESLWPIFRIHHQKT HEGKRKVESLWPIFRIHHQKTRYIFDLFYK K V E F R I 0 1 0 0 0 0 1 0 0 1 1 0 0 1 1 1 0 1 0 1 0 0 9 0 1145.6233 P41223 P41223 43 51 BUD31 Protein BUD31 homolog yes yes 2 9.1033E-07 135.84 By matching By MS/MS 7.67 0.471 1 2 1 2 16535000 0 2277900 14257000 14220 793 14935 62505;62506;62507 52775;52776 52776 1 0 1036400 2253200 VESPVLPPVLVPR SKQKEVCINPYHYKRVESPVLPPVLVPRHN KRVESPVLPPVLVPRHNEFNPQHSLLVQFR R V E P R H 0 1 0 0 0 0 1 0 0 0 2 0 0 0 4 1 0 0 0 4 0 0 13 0 1400.8391 Q99717;Q15797 Q99717 131 143 SMAD5;SMAD1 Mothers against decapentaplegic homolog 5;Mothers against decapentaplegic homolog 1 yes no 2 0.012768 85.29 By MS/MS By matching 7 0 2 1 1 4916900 0 2712300 2204600 14221 1860 14936 62508;62509 52777 52777 1 0 1557400 391200 VESVEPSENEASK VKHVIADQEVMETNRVESVEPSENEASKEL NRVESVEPSENEASKELEPEMEFEIEPDKE R V E S K E 1 0 1 0 0 0 4 0 0 0 0 1 0 0 1 3 0 0 0 2 0 0 13 0 1403.6416 Q9H307 Q9H307 411 423 PNN Pinin yes yes 2 0.00034338 127.83 By MS/MS By matching 2.67 0.471 1 2 2 1 9628900 0 3319300 6309600 14222 1978 14937 62510;62511;62512 52778;52779 52778 2 0 1494700 1223800 VETFSGVYK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NNVEHKVETFSGVYKKLTGKDVNFEFPEFQ K V E Y K K 0 0 0 0 0 0 1 1 0 0 0 1 0 1 0 1 1 0 1 2 0 0 9 0 1028.5179 P62081 P62081 170 178 RPS7 40S ribosomal protein S7 yes yes 2 0.00048519 118.74 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 412750000 0 107000000 305740000 14223 1005 14938 62513;62514;62515 52780;52781;52782 52780 3 0 61441000 54070000 VETFSGVYKK KVHLDKAQQNNVEHKVETFSGVYKKLTGKD NVEHKVETFSGVYKKLTGKDVNFEFPEFQL K V E K K L 0 0 0 0 0 0 1 1 0 0 0 2 0 1 0 1 1 0 1 2 0 0 10 1 1156.6128 P62081 P62081 170 179 RPS7 40S ribosomal protein S7 yes yes 2 0.00036807 120.87 By MS/MS By MS/MS 7 0 2 1 1 37354000 0 18398000 18956000 14224 1005 14939 62516;62517 52783;52784 52783 2 0 10564000 3363600 VETGVLKPGMVVTFAPVNVTTEVK DVYKIGGIGTVPVGRVETGVLKPGMVVTFA MVVTFAPVNVTTEVKSVEMHHEALSEALPG R V E V K S 1 0 1 0 0 0 2 2 0 0 1 2 1 1 2 0 4 0 0 7 0 0 24 1 2514.3767 Q5VTE0;P68104 Q5VTE0 267 290 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 2;3;4 5.9792E-35 191.64 By matching By MS/MS By MS/MS 4.48 1.47 1 2 2 7 7 4 2 1 10 14 1197800000 753690 469050000 728000000 14225 1076 14940;14941 62518;62519;62520;62521;62522;62523;62524;62525;62526;62527;62528;62529;62530;62531;62532;62533;62534;62535;62536;62537;62538;62539;62540;62541;62542 52785;52786;52787;52788;52789;52790;52791;52792;52793;52794;52795;52796;52797;52798;52799;52800;52801;52802;52803;52804;52805;52806;52807;52808 52798 518 23 753690 133760000 113050000 VETPVLPPVLVPR MKKDEVCVNPYHYQRVETPVLPPVLVPRHT QRVETPVLPPVLVPRHTEIPAEFPPLDDYS R V E P R H 0 1 0 0 0 0 1 0 0 0 2 0 0 0 4 0 1 0 0 4 0 0 13 0 1414.8548 P84022;Q15796;O15198 P84022 130 142 SMAD3;SMAD2;SMAD9 Mothers against decapentaplegic homolog 3;Mothers against decapentaplegic homolog 2;Mothers against decapentaplegic homolog 9 yes no 2 0.0039821 103.26 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 19245000 0 5230400 14014000 14226 172 14942 62543;62544;62545;62546 52809;52810;52811 52809 3 0 1551000 2189800 VETQTEELKQNESR RLVETKSSENKLETKVETQTEELKQNESRT KVETQTEELKQNESRTTECKQNESTIVEPK K V E S R T 0 1 1 0 0 2 4 0 0 0 1 1 0 0 0 1 2 0 0 1 0 0 14 1 1689.817 Q6KC79 Q6KC79 644 657 NIPBL Nipped-B-like protein yes yes 3 0.00097578 90.334 By MS/MS 1 0 1 1 3801900 0 0 3801900 14227 1480 14943 62547 52812 52812 1 0 0 819170 VETSEHFR TRESTRGSRRTPRKRVETSEHFRIDGPVIS RRTPRKRVETSEHFRIDGPVISESTPIAET R V E F R I 0 1 0 0 0 0 2 0 1 0 0 0 0 1 0 1 1 0 0 1 0 0 8 0 1003.4723 P42167 P42167 262 269 TMPO Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin yes yes 2 0.016148 87.323 By MS/MS 3.5 0.5 1 1 2 2038800 0 0 2038800 14228 799 14944 62548;62549 52813;52814 52814 2 0 0 333010 VETYLNENLR QLLNERIKLEGIITRVETYLNENLRKRLDQ GIITRVETYLNENLRKRLDQVEQELNELRE R V E L R K 0 1 2 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 1 0 0 10 0 1249.6303 Q9UQE7 Q9UQE7 828 837 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 4.3499E-76 193.75 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 47033000 1653600 0 45379000 14229 2222 14945 62550;62551;62552;62553 52815;52816;52817 52815 3 1992300 0 10255000 VETYLNENLRK QLLNERIKLEGIITRVETYLNENLRKRLDQ IITRVETYLNENLRKRLDQVEQELNELRET R V E R K R 0 1 2 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 1 1 0 0 11 1 1377.7252 Q9UQE7 Q9UQE7 828 838 SMC3 Structural maintenance of chromosomes protein 3 yes yes 3 0.0014578 94.363 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 23771000 0 13491000 10280000 14230 2222 14946 62554;62555;62556 52818;52819 52818 2 0 6156000 2323100 VETYNDESR QNANFRSFIFRVRVKVETYNDESRIKATVM FRVRVKVETYNDESRIKATVMDVKPVDYRE K V E S R I 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 9 0 1111.4782 P27694 P27694 578 586 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.00035022 138.54 By MS/MS 3 0 1 1 5217000 0 0 5217000 14231 679 14947 62557 52820 52820 1 0 0 1011800 VEVEEDGQLK RKITTKRIVENGQERVEVEEDGQLKSLTIN NGQERVEVEEDGQLKSLTINGVADDDALAE R V E L K S 0 0 0 1 0 1 3 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 10 0 1144.5612 O75190;Q8NHS0;P25686 O75190 216 225 DNAJB6;DNAJB8;DNAJB2 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 8;DnaJ homolog subfamily B member 2 yes no 2 0.0012709 109.71 By matching By MS/MS 5.5 1.12 1 1 1 1 1 3 20689000 0 1148200 19541000 14232 247 14948 62558;62559;62560;62561 52821 52821 1 0 381050 3213600 VEVERDNLAEDIMR ELRRQVDQLTNDKARVEVERDNLAEDIMRL RVEVERDNLAEDIMRLREKLQEEMLQREEA R V E M R L 1 2 1 2 0 0 3 0 0 1 1 0 1 0 0 0 0 0 0 2 0 0 14 1 1687.8199 P08670 P08670 171 184 VIM Vimentin yes yes 2;3 1.589E-125 274.8 By MS/MS By MS/MS 3.62 1.39 2 1 1 5 4 4 9 346250000 0 29685000 316560000 14233 476 14949;14950 62562;62563;62564;62565;62566;62567;62568;62569;62570;62571;62572;62573;62574 52822;52823;52824;52825;52826;52827;52828;52829;52830;52831 52826 184 10 0 9820000 49715000 VEVETSGIGDSLLNVK TRHLTKRLPTKSSQKVEVETSGIGDSLLNV EVETSGIGDSLLNVKCAAQTLEKRGKAKPK K V E V K C 0 0 1 1 0 0 2 2 0 1 2 1 0 0 0 2 1 0 0 3 0 0 16 0 1658.8727 O75152 O75152 620 635 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes yes 2 0.0037818 93.011 By MS/MS By MS/MS 2 0 2 1 1 7679800 0 1988800 5690900 14234 244 14951 62575;62576 52832;52833 52832 1 0 895600 1286000 VEVKEELLAVGK TATSSKRRPRTRAQKVEVKEELLAVGKLTQ AQKVEVKEELLAVGKLTQTSGETTHTDKEP K V E G K L 1 0 0 0 0 0 3 1 0 0 2 2 0 0 0 0 0 0 0 3 0 0 12 1 1312.7602 P46013 P46013 2849 2860 MKI67 Antigen KI-67 yes yes 3 0.012552 71.888 By matching By MS/MS 1.33 0.471 2 1 1 2 19858000 0 1917100 17941000 14235 821 14952 62577;62578;62579 52834;52835 52835 2 0 937060 3937700 VEVLNSDAVLPSR VPLYDQWEDVMKGMKVEVLNSDAVLPSRVY MKVEVLNSDAVLPSRVYWIASVIQTAGYRV K V E S R V 1 1 1 1 0 0 1 0 0 0 2 0 0 0 1 2 0 0 0 3 0 0 13 0 1397.7514 Q969R5 Q969R5 216 228 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 yes yes 2 0.0034249 104.79 By matching By MS/MS 2 0.816 1 1 1 1 2 12576000 0 2028100 10548000 14236 1744 14953 62580;62581;62582 52836 52836 1 0 991290 2153300 VEVNTNSGEIIHK QPSKLVKRGPGRKPKVEVNTNSGEIIHKKR PKVEVNTNSGEIIHKKRGRKPKKLQYAKPE K V E H K K 0 0 2 0 0 0 2 1 1 2 0 1 0 0 0 1 1 0 0 2 0 0 13 0 1438.7416 Q8WWQ0 Q8WWQ0 1645 1657 PHIP PH-interacting protein yes yes 3 0.010444 67.118 By MS/MS 1 0 1 1 17454000 0 0 17454000 14237 1690 14954 62583 52837 52837 1 0 0 3760600 VEVNTNSGEIIHKK QPSKLVKRGPGRKPKVEVNTNSGEIIHKKR KVEVNTNSGEIIHKKRGRKPKKLQYAKPED K V E K K R 0 0 2 0 0 0 2 1 1 2 0 2 0 0 0 1 1 0 0 2 0 0 14 1 1566.8366 Q8WWQ0 Q8WWQ0 1645 1658 PHIP PH-interacting protein yes yes 3 0.0013384 84.468 By MS/MS 1 0 1 1 5920500 0 0 5920500 14238 1690 14955 62584 52838 52838 1 0 0 1275700 VEVSEDEPASK ACTEPREPPGLIFNKVEVSEDEPASKAQRR IFNKVEVSEDEPASKAQRRKEKRQRVKGNL K V E S K A 1 0 0 1 0 0 3 0 0 0 0 1 0 0 1 2 0 0 0 2 0 0 11 0 1188.551 O75683 O75683 203 213 SURF6 Surfeit locus protein 6 yes yes 2 1.9371E-05 150.08 By MS/MS By MS/MS 5.33 0.471 2 1 1 2 17346000 0 3845000 13501000 14239 279 14956 62585;62586;62587 52839;52840 52840 2 0 991130 1902300 VEVTEFEDIK LLGEEDEEALHYLTRVEVTEFEDIKSGYRI HYLTRVEVTEFEDIKSGYRIDFYFDENPYF R V E I K S 0 0 0 1 0 0 3 0 0 1 0 1 0 1 0 0 1 0 0 2 0 0 10 0 1207.5972 Q01105;P0DME0 Q01105 123 132 SET;SETSIP Protein SET;Protein SETSIP yes no 2 0.0004495 117.84 By MS/MS 4.17 2.11 1 1 1 1 1 1 6 185600000 0 0 185600000 14240 1130 14957 62588;62589;62590;62591;62592;62593 52841;52842;52843 52841 3 0 0 28604000 VEYLDDR LAPPQHLIRVEGNLRVEYLDDRNTFRHSVV IRVEGNLRVEYLDDRNTFRHSVVVPYEPPE R V E D R N 0 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 908.42396 P04637 P04637 203 209 TP53 Cellular tumor antigen p53 yes yes 2 0.0028445 131.04 By MS/MS 4.5 1.12 1 1 1 1 4 70621000 0 0 70621000 14241 416 14958 62594;62595;62596;62597 52844 52844 1 0 0 10330000 VEYLDDRNTFR LAPPQHLIRVEGNLRVEYLDDRNTFRHSVV GNLRVEYLDDRNTFRHSVVVPYEPPEVGSD R V E F R H 0 2 1 2 0 0 1 0 0 0 1 0 0 1 0 0 1 0 1 1 0 0 11 1 1426.6841 P04637 P04637 203 213 TP53 Cellular tumor antigen p53 yes yes 2;3 3.3211E-08 161.62 By MS/MS By MS/MS 3.44 1.71 2 1 1 2 2 1 3 6 70395000 0 10965000 59430000 14242 416 14959 62598;62599;62600;62601;62602;62603;62604;62605;62606 52845;52846;52847;52848;52849 52849 4 0 3203800 9403700 VEYSEEELK KRKHDNEGSGSKRPKVEYSEEELKTHISKG GSKRPKVEYSEEELKTHISKGTLGKFTVPM K V E L K T 0 0 0 0 0 0 4 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 9 0 1124.5237 P12956 P12956 557 565 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2 0.0025346 103.56 By MS/MS 3 0 1 1 9105200 0 9105200 0 14243 541 14960 62607 52850 52850 1 0 3881500 0 VEYSEEELKTHISK KRKHDNEGSGSKRPKVEYSEEELKTHISKG KVEYSEEELKTHISKGTLGKFTVPMLKEAC K V E S K G 0 0 0 0 0 0 4 0 1 1 1 2 0 0 0 2 1 0 1 1 0 0 14 1 1690.8414 P12956 P12956 557 570 XRCC6 X-ray repair cross-complementing protein 6 yes yes 3;4 0.005246 73.022 By MS/MS 3 0 2 2 22822000 0 22822000 0 14244 541 14961 62608;62609 52851;52852 52852 2 0 9729100 0 VFAEYPGSSAQLR GFMDFICSLVTKSVKVFAEYPGSSAQLRVL VKVFAEYPGSSAQLRVLLAFYASTIVSALV K V F L R V 2 1 0 0 0 1 1 1 0 0 1 0 0 1 1 2 0 0 1 1 0 0 13 0 1423.7096 Q9H583 Q9H583 202 214 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00046605 121.6 By MS/MS By matching 1.5 0.5 1 1 1 1 19812000 0 13955000 5856900 14245 1984 14962 62610;62611 52853 52853 1 0 6820900 1323500 VFAIPPSFASIFLTK NASSMCVPDQDTAIRVFAIPPSFASIFLTK VFAIPPSFASIFLTKSTKLTCLVTDLTTYD R V F T K S 2 0 0 0 0 0 0 0 0 2 1 1 0 3 2 2 1 0 0 1 0 0 15 0 1636.9229 P01871;P0DOX6 P01871 224 238 IGHM Ig mu chain C region yes no 2 0.0056739 82.171 By MS/MS 3.5 0.5 1 1 2 3063500 3063500 0 0 14246 385 14963 62612;62613 52854 52854 1 2720800 0 0 VFANNADQQLVK NWALPVMYAVALDLRVFANNADQQLVKKGK DLRVFANNADQQLVKKGKSKVGDMLEKAAE R V F V K K 2 0 2 1 0 2 0 0 0 0 1 1 0 1 0 0 0 0 0 2 0 0 12 0 1345.699 Q5JVF3 Q5JVF3 117 128 PCID2 PCI domain-containing protein 2 yes yes 2 0.0020909 109.66 By MS/MS 5 0 1 1 18575000 0 0 18575000 14247 1441 14964 62614 52855 52855 1 0 0 2590900 VFASELNAGIIK WDSLRSGPASTFNDRVFASELNAGIIKTDQ NDRVFASELNAGIIKTDQNYEKMMFKEALK R V F I K T 2 0 1 0 0 0 1 1 0 2 1 1 0 1 0 1 0 0 0 1 0 0 12 0 1260.7078 Q9P2J5 Q9P2J5 796 807 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.037299 76.465 By MS/MS 2 0 1 1 3916600 0 3916600 0 14248 2124 14965 62615 52856 52856 1 0 1763700 0 VFDAIMNFK LPRTFCQLILDPIFKVFDAIMNFKKEETAK LDPIFKVFDAIMNFKKEETAKLIEKLDIKL K V F F K K 1 0 1 1 0 0 0 0 0 1 0 1 1 2 0 0 0 0 0 1 0 0 9 0 1083.5423 P13639 P13639 300 308 EEF2 Elongation factor 2 yes yes 2 0.00039395 124.83 By MS/MS By matching By MS/MS 2.6 0.8 3 1 1 1 1 3 23909000 2471000 3813800 17624000 14249 547 14966 62616;62617;62618;62619;62620 52857;52858;52859 52857 3 2977300 1717400 3545800 VFDEFKPLVEEPQNLIK EKCCAAADPHECYAKVFDEFKPLVEEPQNL DEFKPLVEEPQNLIKQNCELFEQLGEYKFQ K V F I K Q 0 0 1 1 0 1 3 0 0 1 2 2 0 2 2 0 0 0 0 2 0 0 17 1 2044.0881 CON__P02768-1;P02768 CON__P02768-1 397 413 ALB Serum albumin yes no 2;3 4.0937E-47 222.56 By MS/MS 5.35 2.76 2 1 2 2 2 2 1 2 2 1 17 1639500000 1639500000 0 0 + 14250 44 14967 62621;62622;62623;62624;62625;62626;62627;62628;62629;62630;62631;62632;62633;62634;62635;62636;62637 52860;52861;52862;52863;52864;52865;52866;52867;52868;52869;52870;52871;52872;52873;52874;52875 52866 16 1191500000 0 0 VFDGIPPPYDK PHKTKRGQAALDRLKVFDGIPPPYDKKKRM DRLKVFDGIPPPYDKKKRMVVPAALKVVRL K V F D K K 0 0 0 2 0 0 0 1 0 1 0 1 0 1 3 0 0 0 1 1 0 0 11 0 1246.6234 P40429;Q6NVV1 P40429 104 114 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.011349 89.047 By matching By MS/MS 7.33 0.471 2 1 1 2 57357000 0 7368600 49989000 14251 784 14968 62638;62639;62640 52876 52876 1 0 4231100 8825700 VFDKDGNGYISAAELR MKDTDSEEEIREAFRVFDKDGNGYISAAEL FDKDGNGYISAAELRHVMTNLGEKLTDEEV R V F L R H 2 1 1 2 0 0 1 2 0 1 1 1 0 1 0 1 0 0 1 1 0 0 16 1 1753.8635 P0DP25;P0DP24;P0DP23 P0DP25 92 107 yes no 2;3 1.0128E-07 170.66 By MS/MS By MS/MS 8 0.632 1 3 1 1 4 104630000 0 3378200 101250000 14252 505 14969 62641;62642;62643;62644;62645 52877;52878;52879;52880 52879 4 0 1536900 16400000 VFDKEGNGTVMGAELR NKDQATYEDFVEGLRVFDKEGNGTVMGAEL FDKEGNGTVMGAELRHVLATLGEKMKEEEV R V F L R H 1 1 1 1 0 0 2 3 0 0 1 1 1 1 0 0 1 0 0 2 0 0 16 1 1721.8407 P05976;P08590 P05976 138 153 MYL1;MYL3 Myosin light chain 1/3, skeletal muscle isoform;Myosin light chain 3 yes no 2;3 2.7523E-05 131.32 By MS/MS By MS/MS 8.71 0.7 3 3 1 3 4 60855000 0 12422000 48433000 14253 437 14970 62646;62647;62648;62649;62650;62651;62652 52881;52882;52883;52884;52885;52886 52884 6 0 16842000 12626000 VFDMLNR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI IIVGTPGRVFDMLNRRYLSPKYIKMFVLDE R V F N R R 0 1 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 7 0 893.44292 P60842;Q14240 P60842 162 168 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.0030653 141.55 By MS/MS By MS/MS 5 0 2 1 1 33798000 0 8877000 24921000 14254 967;1294 14971 62653;62654 52887;52888 52888 2 0 2288200 3476000 VFDMLNRR LQMEAPHIIVGTPGRVFDMLNRRYLSPKYI IVGTPGRVFDMLNRRYLSPKYIKMFVLDEA R V F R R Y 0 2 1 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 8 1 1049.544 P60842;Q14240 P60842 162 169 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.0059809 105.12 By MS/MS 5 0 1 1 9114700 0 9114700 0 14255 967;1294 14972 62655 52889 52889 1 0 2349500 0 VFDPVPVGVTK ILPLHSQIPREEQRKVFDPVPVGVTKVILS EQRKVFDPVPVGVTKVILSTNIAETSITIN K V F T K V 0 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 1 0 0 4 0 0 11 0 1156.6492 Q08211 Q08211 698 708 DHX9 ATP-dependent RNA helicase A yes yes 2 0.0093176 92.538 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 3 2 156590000 0 45942000 110650000 14256 1182 14973 62656;62657;62658;62659;62660 52890;52891;52892 52892 3 0 20359000 24574000 VFDVIIR GTRDYSPRQMAVREKVFDVIIRCFKRHGAE RQMAVREKVFDVIIRCFKRHGAEVIDTPVF K V F I R C 0 1 0 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 2 0 0 7 0 860.51199 P12081 P12081 76 82 HARS Histidine--tRNA ligase, cytoplasmic yes yes 2 0.019593 103.29 By MS/MS 4 0 1 1 2599600 0 0 2599600 14257 532 14974 62661 52893 52893 1 0 0 424600 VFEDESGKHWSK QKELEHMVRKILNLRVFEDESGKHWSKSVM NLRVFEDESGKHWSKSVMDKQYEILCVSQF R V F S K S 0 0 0 1 0 0 2 1 1 0 0 2 0 1 0 2 0 1 0 1 0 0 12 1 1447.6732 Q8TEA8 Q8TEA8 54 65 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 yes yes 3 0.017462 66.953 By matching By MS/MS 7 0 2 1 1 6612200 0 800780 5811400 14258 1664 14975 62662;62663 52894 52894 1 0 459810 1031200 VFEISPFEPWITR LPFPLPLFAYRWVARVFEISPFEPWITRDK ARVFEISPFEPWITRDKVERMHITDMKLPH R V F T R D 0 1 0 0 0 0 2 0 0 2 0 0 0 2 2 1 1 1 0 1 0 0 13 0 1619.8348 Q16795 Q16795 304 316 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2 0.00031279 138.25 By matching By MS/MS 6 0 2 1 1 18188000 0 1743200 16445000 14259 1400 14976 62664;62665 52895 52895 1 0 603440 2460300 VFEVNASNLEK KKIEKEIQQKWDTERVFEVNASNLEKQTSK DTERVFEVNASNLEKQTSKGKYFVTFPYPY R V F E K Q 1 0 2 0 0 0 2 0 0 0 1 1 0 1 0 1 0 0 0 2 0 0 11 0 1248.635 Q9P2J5 Q9P2J5 29 39 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 0.00078902 116.52 By MS/MS 2 0 1 1 5020600 0 5020600 0 14260 2124 14977 62666 52896 52896 1 0 2260800 0 VFEVSLADLQNDEVAFR RTQGTKIASDGLKGRVFEVSLADLQNDEVA EVSLADLQNDEVAFRKFKLITEDVQGKNCL R V F F R K 2 1 1 2 0 1 2 0 0 0 2 0 0 2 0 1 0 0 0 3 0 0 17 0 1950.9687 P61247 P61247 66 82 RPS3A 40S ribosomal protein S3a yes yes 2;3 1.8527E-92 256.52 By MS/MS By MS/MS 6 0 4 2 2 30388000 0 4993700 25394000 14261 988 14978 62667;62668;62669;62670 52897;52898;52899 52897 2 0 1728700 3799300 VFEVSLADLQNDEVAFRK RTQGTKIASDGLKGRVFEVSLADLQNDEVA VSLADLQNDEVAFRKFKLITEDVQGKNCLT R V F R K F 2 1 1 2 0 1 2 0 0 0 2 1 0 2 0 1 0 0 0 3 0 0 18 1 2079.0637 P61247 P61247 66 83 RPS3A 40S ribosomal protein S3a yes yes 3 3.1553E-10 157.91 By MS/MS By MS/MS 6 0 2 1 1 31525000 0 16632000 14892000 14262 988 14979 62671;62672 52900;52901 52900 2 0 5757600 2228000 VFFDLMR NYVETSAKTRANVDKVFFDLMREIRARKME KTRANVDKVFFDLMREIRARKMEDSKEKNG K V F M R E 0 1 0 1 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 1 0 0 7 0 926.46841 P11233;P11234 P11233 167 173 RALA;RALB Ras-related protein Ral-A;Ras-related protein Ral-B yes no 2 0.011689 117.7 By matching By MS/MS 7 0 2 1 1 16741000 0 1324100 15417000 14263 521 14980 62673;62674 52902 52902 1 0 760310 2735700 VFFYNPTTR IPGTPWCVVWTGDERVFFYNPTTRLSMWDR WTGDERVFFYNPTTRLSMWDRPDDLIGRAD R V F T R L 0 1 1 0 0 0 0 0 0 0 0 0 0 2 1 0 2 0 1 1 0 0 9 0 1143.5713 O14776 O14776 544 552 TCERG1 Transcription elongation regulator 1 yes yes 2 0.00098008 110.12 By MS/MS 2 0 1 1 6889400 0 6889400 0 14264 145 14981 62675 52903 52903 1 0 3102400 0 VFGAAPLENVVR IVLCISPSKPNPVFKVFGAAPLENVVRKYK VFKVFGAAPLENVVRKYKSMILEDLESALA K V F V R K 2 1 1 0 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 3 0 0 12 0 1270.7034 Q16656 Q16656 146 157 NRF1 Nuclear respiratory factor 1 yes yes 2 0.0076537 98.044 By MS/MS By MS/MS 4 0.707 1 2 1 1 3 32351000 0 5277900 27073000 14265 1396 14982 62676;62677;62678;62679 52904;52905 52905 2 0 1751600 4502700 VFGAPNVVEDEIDQYLSK GPSSEMETSVPPGFKVFGAPNVVEDEIDQY APNVVEDEIDQYLSKQDGKIYRSRDPQLCR K V F S K Q 1 0 1 2 0 1 2 1 0 1 1 1 0 1 1 1 0 0 1 3 0 0 18 0 2021.9946 Q8TAT6 Q8TAT6 99 116 NPLOC4 Nuclear protein localization protein 4 homolog yes yes 2 0.0014572 81.647 By MS/MS 3 0 1 1 3146300 0 0 3146300 14266 1654 14983 62680 52906 52906 1 0 0 610240 VFGFPVHYTDVSNMSR MNEKEDILWCTEMERVFGFPVHYTDVSNMS FGFPVHYTDVSNMSRLARQRLLGRSWSVPV R V F S R L 0 1 1 1 0 0 0 1 1 0 0 0 1 2 1 2 1 0 1 3 0 0 16 0 1854.8723 Q9Y6K1 Q9Y6K1 867 882 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes yes 3 0.019309 48.053 By MS/MS 2 0 1 1 3848600 0 3848600 0 14267 2313 14984 62681 52907 52907 1 0 1733100 0 VFGNEIK SAEDLEKALELTGLKVFGNEIKLEKPKGKD ALELTGLKVFGNEIKLEKPKGKDSKKERDA K V F I K L 0 0 1 0 0 0 1 1 0 1 0 1 0 1 0 0 0 0 0 1 0 0 7 0 805.4334 P19338 P19338 371 377 NCL Nucleolin yes yes 2 0.052087 76.833 By MS/MS By matching 3 1.41 1 1 1 1 1 3 2 106340000 0 79194000 27144000 14268 604 14985 62682;62683;62684;62685;62686 52908 52908 1 0 34755000 4326800 VFGNEIKLEKPK SAEDLEKALELTGLKVFGNEIKLEKPKGKD GLKVFGNEIKLEKPKGKDSKKERDARTLLA K V F P K G 0 0 1 0 0 0 2 1 0 1 1 3 0 1 1 0 0 0 0 1 0 0 12 2 1400.8028 P19338 P19338 371 382 NCL Nucleolin yes yes 3 0.0077738 81.431 By MS/MS 3 0.816 1 1 1 3 16181000 0 16181000 0 14269 604 14986 62687;62688;62689 52909 52909 1 0 6752200 0 VFGPTIVAHAVPNPDPVTMLQDIK AQSPHTKMDVANLAKVFGPTIVAHAVPNPD AVPNPDPVTMLQDIKRQPKVVERLLSLPLE K V F I K R 2 0 1 2 0 1 0 1 1 2 1 1 1 1 4 0 2 0 0 4 0 0 24 0 2558.3567 Q9H0H5 Q9H0H5 499 522 RACGAP1 Rac GTPase-activating protein 1 yes yes 3 0.00037803 56.95 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 11789000 0 5377200 6412000 14270 1963 14987 62690;62691;62692 52910;52911 52911 2 0 2193800 1243600 VFGPTIVAHAVPNPDPVTMLQDIKR AQSPHTKMDVANLAKVFGPTIVAHAVPNPD VPNPDPVTMLQDIKRQPKVVERLLSLPLEY K V F K R Q 2 1 1 2 0 1 0 1 1 2 1 1 1 1 4 0 2 0 0 4 0 0 25 1 2714.4578 Q9H0H5 Q9H0H5 499 523 RACGAP1 Rac GTPase-activating protein 1 yes yes 4 0.005333 36.576 By MS/MS 3 0 1 1 4338200 0 4338200 0 14271 1963 14988 62693 52912 52912 1 0 1849400 0 VFGWVHR VKIGALEGYRGQRVKVFGWVHRLRRQGKNL GYRGQRVKVFGWVHRLRRQGKNLMFLVLRD K V F H R L 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 2 0 0 7 0 899.47661 O43776 O43776 130 136 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 2 0.0029874 143.22 By MS/MS By MS/MS 3.25 0.829 1 1 2 3 1 27989000 0 23479000 4509600 14272 211 14989 62694;62695;62696;62697 52913;52914;52915 52914 2 0 8152100 736570 VFHGADSDIEWLQK MYILNESLTDPAIVKVFHGADSDIEWLQKD KVFHGADSDIEWLQKDFGLYVVNMFDTHQA K V F Q K D 1 0 0 2 0 1 1 1 1 1 1 1 0 1 0 1 0 1 0 1 0 0 14 0 1643.7944 Q01780 Q01780 364 377 EXOSC10 Exosome component 10 yes yes 2 0.00016271 152.69 By MS/MS 2 0 1 1 6136300 0 0 6136300 14273 1138 14990 62698 52916 52916 1 0 0 1386700 VFIDQINR PSAQGRQKESGSKWKVFIDQINRSLENYEP ESGSKWKVFIDQINRSLENYEPCSSQNCSC K V F N R S 0 1 1 1 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 8 0 1003.5451 Q8NBL1 Q8NBL1 34 41 POGLUT1 Protein O-glucosyltransferase 1 yes yes 2 0.0010414 121.29 By MS/MS 5 0 1 1 6493800 0 0 6493800 14274 1625 14991 62699 52917 52917 1 0 0 905770 VFIELVDAR V F A R 1 1 0 1 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1060.5917 REV__Q81999 yes yes 2 0.0023814 104.21 By MS/MS 9 0 1 1 18699000 0 0 18699000 + 14275 2337 14992 62700 52918 52918 1 0 0 5973200 VFIGNLNTALVK SNVTNKNDPKSINSRVFIGNLNTALVKKSD NSRVFIGNLNTALVKKSDVETIFSKYGRVA R V F V K K 1 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 2 0 0 12 0 1287.7551 Q9UKM9 Q9UKM9 23 34 RALY RNA-binding protein Raly yes yes 2 9.4133E-05 140.45 By MS/MS By MS/MS By MS/MS 5.85 2.44 1 1 1 2 3 2 1 1 1 1 9 3 676960000 32236000 284220000 360510000 14276 2181 14993 62701;62702;62703;62704;62705;62706;62707;62708;62709;62710;62711;62712;62713 52919;52920;52921;52922;52923;52924;52925;52926 52922 8 42923000 113290000 53626000 VFIGNLNTALVKK SNVTNKNDPKSINSRVFIGNLNTALVKKSD SRVFIGNLNTALVKKSDVETIFSKYGRVAG R V F K K S 1 0 2 0 0 0 0 1 0 1 2 2 0 1 0 0 1 0 0 2 0 0 13 1 1415.85 Q9UKM9 Q9UKM9 23 35 RALY RNA-binding protein Raly yes yes 3 0.0001736 114.72 By MS/MS 6 0 1 1 7726800 0 7726800 0 14277 2181 14994 62714 52927 52927 1 0 2674800 0 VFIGNLNTLVVK SNVTNKTDPRSMNSRVFIGNLNTLVVKKSD NSRVFIGNLNTLVVKKSDVEAIFSKYGKIV R V F V K K 0 0 2 0 0 0 0 1 0 1 2 1 0 1 0 0 1 0 0 3 0 0 12 0 1315.7864 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 18 29 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2;3 5.7499E-05 144.77 By MS/MS By MS/MS By MS/MS 5.3 2.51 2 2 2 2 4 4 2 2 2 1 3 9 11 2480200000 132190000 1093100000 1254900000 14278 467 14995 62715;62716;62717;62718;62719;62720;62721;62722;62723;62724;62725;62726;62727;62728;62729;62730;62731;62732;62733;62734;62735;62736;62737 52928;52929;52930;52931;52932;52933;52934;52935;52936;52937;52938;52939;52940;52941;52942;52943;52944;52945;52946;52947;52948;52949;52950;52951;52952;52953;52954 52940 27 166150000 378420000 212070000 VFIGNLNTLVVKK SNVTNKTDPRSMNSRVFIGNLNTLVVKKSD SRVFIGNLNTLVVKKSDVEAIFSKYGKIVG R V F K K S 0 0 2 0 0 0 0 1 0 1 2 2 0 1 0 0 1 0 0 3 0 0 13 1 1443.8813 P07910;P0DMR1;O60812;B7ZW38;B2RXH8 P07910 18 30 HNRNPC;HNRNPCL4;HNRNPCL1;HNRNPCL3;HNRNPCL2 Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 4;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2 yes no 2;3 0.00087367 105.98 By MS/MS By MS/MS 5.33 0.745 1 2 3 4 2 82422000 0 67711000 14711000 14279 467 14996 62738;62739;62740;62741;62742;62743 52955;52956;52957 52956 2 0 23198000 2128700 VFIPHGLIMDR DLFCIPNHYAEDLERVFIPHGLIMDRTERL DLERVFIPHGLIMDRTERLARDVMKEMGGH R V F D R T 0 1 0 1 0 0 0 1 1 2 1 0 1 1 1 0 0 0 0 1 0 0 11 0 1296.7013 P00492 P00492 35 45 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 3 0.059561 42.243 By matching By MS/MS 7 0 2 1 1 7762500 0 560380 7202200 14280 361 14997 62744;62745 52958 52958 1 0 321770 1278000 VFISNIPYDMK KNSGAGEKKGPNRNRVFISNIPYDMKWQAI NRNRVFISNIPYDMKWQAIKDLMREKVGEV R V F M K W 0 0 1 1 0 0 0 0 0 2 0 1 1 1 1 1 0 0 1 1 0 0 11 0 1325.669 Q9P2K5 Q9P2K5 102 112 MYEF2 Myelin expression factor 2 yes yes 2 0.0059118 94.692 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 8530000 0 8530000 0 14281 2125 14998 62746;62747;62748 52959;52960;52961 52961 3 0 2830800 0 VFLDFFTYAPPK MAQKEAVIKHSLVHKVFLDFFTYAPPKLRS VHKVFLDFFTYAPPKLRSEMIEAIREAVVY K V F P K L 1 0 0 1 0 0 0 0 0 0 1 1 0 3 2 0 1 0 1 1 0 0 12 0 1443.7438 Q15397 Q15397 331 342 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 0.0075243 98.249 By MS/MS By MS/MS 3.75 0.829 2 1 1 1 3 47458000 0 6835000 40623000 14282 1362 14999 62749;62750;62751;62752 52962;52963;52964;52965;52966 52962 5 0 2913800 7668300 VFLDVLMK FEVLKRNGWEESRIKVFLDVLMKEVLCPES WEESRIKVFLDVLMKEVLCPESQSPNGVRF K V F M K E 0 0 0 1 0 0 0 0 0 0 2 1 1 1 0 0 0 0 0 2 0 0 8 0 963.54633 Q14684 Q14684 144 151 RRP1B Ribosomal RNA processing protein 1 homolog B yes yes 2 0.033452 77.058 By MS/MS 2.5 0.5 1 1 2 11290000 0 0 11290000 14283 1313 15000 62753;62754 52967 52967 1 0 0 2271400 VFLEELMAPVASIWLSQDMHR LVLISNQFKNYERQKVFLEELMAPVASIWL MAPVASIWLSQDMHRVLSDVDAFIAYVGTD K V F H R V 2 1 0 1 0 1 2 0 1 1 3 0 2 1 1 2 0 1 0 2 0 0 21 0 2471.2341 Q9HAV4 Q9HAV4 667 687 XPO5 Exportin-5 yes yes 3 0.0015206 57.989 By MS/MS 2 0 1 1 1414100 0 0 1414100 14284 2004 15001 62755 52968 52968 1 0 0 319560 VFLENVIR RISGLIYEETRGVLKVFLENVIRDAVTYTE ETRGVLKVFLENVIRDAVTYTEHAKRKTVT K V F I R D 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 8 0 988.57057 P62805 P62805 61 68 HIST1H4A Histone H4 yes yes 2 7.9172E-22 195.85 By MS/MS By MS/MS By MS/MS 7.67 2.56 3 2 2 1 2 3 3 7 25 9 8 9 40 25667000000 646340000 8617500000 16403000000 14285 1033 15002 62756;62757;62758;62759;62760;62761;62762;62763;62764;62765;62766;62767;62768;62769;62770;62771;62772;62773;62774;62775;62776;62777;62778;62779;62780;62781;62782;62783;62784;62785;62786;62787;62788;62789;62790;62791;62792;62793;62794;62795;62796;62797;62798;62799;62800;62801;62802;62803;62804;62805;62806;62807;62808;62809;62810;62811;62812 52969;52970;52971;52972;52973;52974;52975;52976;52977;52978;52979;52980;52981;52982;52983;52984;52985;52986;52987;52988;52989;52990;52991;52992;52993;52994;52995;52996;52997;52998;52999;53000;53001;53002;53003;53004;53005;53006;53007;53008;53009;53010;53011;53012;53013;53014;53015;53016;53017;53018;53019;53020;53021;53022;53023;53024;53025;53026;53027;53028;53029;53030;53031;53032;53033;53034;53035;53036;53037;53038;53039;53040;53041;53042;53043;53044;53045;53046;53047;53048;53049;53050;53051;53052;53053;53054;53055;53056;53057;53058;53059;53060;53061;53062;53063;53064 53013 95 495820000 16771000000 8794400000 VFLENVIRDAVTYTEHAK RISGLIYEETRGVLKVFLENVIRDAVTYTE ENVIRDAVTYTEHAKRKTVTAMDVVYALKR K V F A K R 2 1 1 1 0 0 2 0 1 1 1 1 0 1 0 0 2 0 1 3 0 0 18 1 2104.0953 P62805 P62805 61 78 HIST1H4A Histone H4 yes yes 2;3;4 1.2034E-50 221.59 By MS/MS 8.36 0.643 1 5 5 11 493080000 0 0 493080000 14286 1033 15003 62813;62814;62815;62816;62817;62818;62819;62820;62821;62822;62823 53065;53066;53067;53068;53069;53070;53071;53072;53073;53074 53067 10 0 0 139810000 VFLGNVETFIK KLRINLNLIYDHNPKVFLGNVETFIKQIDS HNPKVFLGNVETFIKQIDSVNHINLFFTEL K V F I K Q 0 0 1 0 0 0 1 1 0 1 1 1 0 2 0 0 1 0 0 2 0 0 11 0 1265.702 O95163 O95163 762 772 IKBKAP Elongator complex protein 1 yes yes 2 0.014549 87.258 By MS/MS 2 0 1 1 1919500 0 1919500 0 14287 310 15004 62824 53075 53075 1 0 864360 0 VFLHLADIYAK TKVFERAVQYNEPLKVFLHLADIYAKSEKF EPLKVFLHLADIYAKSEKFQEAGELYNRML K V F A K S 2 0 0 1 0 0 0 0 1 1 2 1 0 1 0 0 0 0 1 1 0 0 11 0 1288.718 Q14690 Q14690 1693 1703 PDCD11 Protein RRP5 homolog yes yes 2;3 0.0003272 122.28 By MS/MS By MS/MS 1.6 0.8 3 1 1 1 4 33309000 0 3024300 30285000 14288 1314 15005 62825;62826;62827;62828;62829 53076;53077;53078 53078 3 0 1478200 6537400 VFLWGSFR SAGDSHTAALTDDGRVFLWGSFRDNNGVIG ALTDDGRVFLWGSFRDNNGVIGLLEPMKKS R V F F R D 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 1 0 1 0 1 0 0 8 0 1010.5338 P18754 P18754 140 147 RCC1 Regulator of chromosome condensation yes yes 2 3.9396E-20 190.49 By MS/MS By MS/MS By MS/MS 3.56 1.34 1 1 2 2 3 1 3 5 245690000 8087900 52450000 185150000 14289 599 15006 62830;62831;62832;62833;62834;62835;62836;62837;62838 53079;53080;53081;53082;53083;53084;53085;53086;53087;53088;53089 53083 11 6479500 14052000 27901000 VFMAHQDLR RFINHHCEPNLVPVRVFMAHQDLRFPRIAF NLVPVRVFMAHQDLRFPRIAFFSTRLIEAG R V F L R F 1 1 0 1 0 1 0 0 1 0 1 0 1 1 0 0 0 0 0 1 0 0 9 0 1115.5546 Q9H9B1 Q9H9B1 1212 1220 EHMT1 Histone-lysine N-methyltransferase EHMT1 yes yes 2 0.057963 68.224 By MS/MS 2 0 1 1 0 0 0 0 14290 1998 15007 62839 53090 53090 1 0 0 0 VFNELLVLLPDTAK YYKSCRDLLGENFQKVFNELLVLLPDTAKQ KVFNELLVLLPDTAKQQELLSAHTDFCNRE K V F A K Q 1 0 1 1 0 0 1 0 0 0 4 1 0 1 1 0 1 0 0 2 0 0 14 0 1570.897 Q86UK7 Q86UK7 810 823 ZNF598 Zinc finger protein 598 yes yes 2 0.0083032 83.573 By MS/MS 2 0 1 1 6067300 0 6067300 0 14291 1548 15008 62840 53091 53091 1 0 2732200 0 VFNIYTDATPLR LVVLPTKELAQQVSKVFNIYTDATPLRVSL VSKVFNIYTDATPLRVSLVTGQKSLAKEQE K V F L R V 1 1 1 1 0 0 0 0 0 1 1 0 0 1 1 0 2 0 1 1 0 0 12 0 1408.7351 Q8N8A6 Q8N8A6 300 311 DDX51 ATP-dependent RNA helicase DDX51 yes yes 2 0.0055081 102.06 By MS/MS By matching 3 0.816 1 1 1 2 1 21169000 0 6887100 14282000 14292 1615 15009 62841;62842;62843 53092 53092 1 0 2999400 2332800 VFNPYTEFK DLNQGIGEPQSPSRRVFNPYTEFKEFSRKQ QSPSRRVFNPYTEFKEFSRKQIKDMEKMFK R V F F K E 0 0 1 0 0 0 1 0 0 0 0 1 0 2 1 0 1 0 1 1 0 0 9 0 1143.5601 Q96C19 Q96C19 79 87 EFHD2 EF-hand domain-containing protein D2 yes yes 2 0.0071701 93.162 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 18429000 0 9524800 8904400 14293 1757 15010 62844;62845;62846;62847 53093;53094 53093 2 0 3813600 1559900 VFNTTPDDLDLHVIYDVSHNIAK NRSSMTFLTRQAFAKVFNTTPDDLDLHVIY LDLHVIYDVSHNIAKVEQHVVDGKERTLLV K V F A K V 1 0 2 4 0 0 0 0 2 2 2 1 0 1 1 1 2 0 1 3 0 0 23 0 2625.3075 Q9Y3I0 Q9Y3I0 335 357 RTCB tRNA-splicing ligase RtcB homolog yes yes 3;4 0.0047693 44.258 By MS/MS 4 0 2 2 63443000 0 0 63443000 14294 2276 15011 62848;62849 53095;53096 53096 2 0 0 10362000 VFNVFCLYGNVEK LMVYGLDQSKMNCDRVFNVFCLYGNVEKVK DRVFNVFCLYGNVEKVKFMKSKPGAAMVEM R V F E K V 0 0 2 0 1 0 1 1 0 0 1 1 0 2 0 0 0 0 1 3 0 0 13 0 1587.7755 P14866 P14866 399 411 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 0.00031646 138.71 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 31118000 0 4966900 26151000 14295 565 15012 62850;62851 53097;53098 53098 2 0 1648300 5072000 VFPGSTTEDYNLIVIER LDLDLTADSQPPVFKVFPGSTTEDYNLIVI PGSTTEDYNLIVIERGAAAAATGQPGTAPA K V F E R G 0 1 1 1 0 0 2 1 0 2 1 0 0 1 1 1 2 0 1 2 0 0 17 0 1951.9891 Q13263 Q13263 508 524 TRIM28 Transcription intermediary factor 1-beta yes yes 2 5.5866E-20 194.06 By matching By MS/MS 2.75 0.829 2 1 1 1 3 20251000 0 1538500 18713000 14296 1235 15013 62852;62853;62854;62855 53099;53100;53101;53102 53100 4 0 692810 3936400 VFQAMWLSFLK LWDTWKVAHLKEHRRVFQAMWLSFLKHKLP EHRRVFQAMWLSFLKHKLPLSLYKKVLLIV R V F L K H 1 0 0 0 0 1 0 0 0 0 2 1 1 2 0 1 0 1 0 1 0 0 11 0 1368.7264 Q9BVI4 Q9BVI4 251 261 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.00032712 121.73 By MS/MS 4 0 1 1 12226000 0 0 12226000 14297 1914 15014 62856 53103 53103 1 0 0 1997000 VFQFLNAK IYPGHGRRYARTDGKVFQFLNAKCESAFLS YARTDGKVFQFLNAKCESAFLSKRNPRQIN K V F A K C 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 1 0 0 8 0 965.53345 P83731 P83731 28 35 RPL24 60S ribosomal protein L24 yes yes 2 0.012262 90.986 By matching By MS/MS 7 2.31 1 1 1 1 2 2 4 433220000 0 11637000 421580000 14298 1106 15015 62857;62858;62859;62860;62861;62862 53104;53105 53105 2 0 43592000 111440000 VFQGTDEQLNDLYHNHQR QMEKDNSELEEKMEKVFQGTDEQLNDLYHN GTDEQLNDLYHNHQRTVREKERKLVDCHRE K V F Q R T 0 1 2 2 0 3 1 1 2 0 2 0 0 1 0 0 1 0 1 1 0 0 18 0 2213.025 Q92878 Q92878 296 313 RAD50 DNA repair protein RAD50 yes yes 4 0.0014181 66.335 By MS/MS 1.5 0.5 1 1 2 29248000 0 0 29248000 14299 1726 15016 62863;62864 53106 53106 1 0 0 6498400 VFQNEVLGTLQR EPDSRGGSPQMDDIKVFQNEVLGTLQRGKE DIKVFQNEVLGTLQRGKEENISCDNLVLEI K V F Q R G 0 1 1 0 0 2 1 1 0 0 2 0 0 1 0 0 1 0 0 2 0 0 12 0 1402.7569 Q13144 Q13144 552 563 EIF2B5 Translation initiation factor eIF-2B subunit epsilon yes yes 2 0.0009419 118.81 By MS/MS By MS/MS 3 0 2 1 1 13173000 0 3065200 10108000 14300 1223 15017 62865;62866 53107;53108 53108 2 0 1306700 1960500 VFQPFFVELTMPYSVIR SRDTGLGLSPTASLRVFQPFFVELTMPYSV QPFFVELTMPYSVIRGEAFTLKATVLNYLP R V F I R G 0 1 0 0 0 1 1 0 0 1 1 0 1 3 2 1 1 0 1 3 0 0 17 0 2072.0805 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 793 809 yes yes 2 0.0066943 72.937 By MS/MS 8 0 1 1 321930 321930 0 0 + 14301 28 15018 62867 53109 53109 1 276380 0 0 VFQTEAELQEVISDLQSK QLTDENQSCCPVCQRVFQTEAELQEVISDL TEAELQEVISDLQSKLRLAPDKLKSTESEL R V F S K L 1 0 0 1 0 3 3 0 0 1 2 1 0 1 0 2 1 0 0 2 0 0 18 0 2063.0423 Q92878 Q92878 687 704 RAD50 DNA repair protein RAD50 yes yes 3 3.1791E-10 158.17 By matching By MS/MS 1.33 0.471 2 1 1 2 9813400 0 358300 9455100 14302 1726 15019 62868;62869;62870 53110;53111 53111 2 0 175130 2052400 VFSATLGLVDIVK SGLEHSAHVLEKGGKVFSATLGLVDIVKGT GKVFSATLGLVDIVKGTNSYYKLQLLEDDK K V F V K G 1 0 0 1 0 0 0 1 0 1 2 1 0 1 0 1 1 0 0 3 0 0 13 0 1360.7966 P09874 P09874 552 564 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 0.00024906 138.22 By MS/MS By MS/MS By MS/MS 2.18 0.936 3 4 3 1 1 3 7 460280000 8959500 61213000 390110000 14303 492 15020 62871;62872;62873;62874;62875;62876;62877;62878;62879;62880;62881 53112;53113;53114;53115;53116;53117;53118;53119;53120;53121;53122;53123 53123 12 10795000 27649000 86524000 VFSDEVQQQAQLSTIR VHPNYHKEPFLQQLKVFSDEVQQQAQLSTI FSDEVQQQAQLSTIRSFLKLYTTMPVAKLA K V F I R S 1 1 0 1 0 4 1 0 0 1 1 0 0 1 0 2 1 0 0 2 0 0 16 0 1847.9377 Q9Y262 Q9Y262 446 461 EIF3L Eukaryotic translation initiation factor 3 subunit L yes yes 2 9.6481E-27 204.85 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 11183000 0 7625300 3557400 14304 2233 15021 62882;62883 53124;53125 53124 2 0 2530600 689970 VFSDIIYTVASCTENEASR QQKTPNFSTLLCYDRVFSDIIYTVASCTEN IIYTVASCTENEASRYGRFLCCMLETVTRW R V F S R Y 2 1 1 1 1 0 2 0 0 2 0 0 0 1 0 3 2 0 1 2 0 0 19 0 2160.9997 Q8NI27 Q8NI27 1020 1038 THOC2 THO complex subunit 2 yes yes 3 0.0012775 64.83 By MS/MS 1 0 1 1 1628000 0 0 1628000 14305 1647 15022 62884 53126 53126 1 0 0 350770 VFSGLVSTGLK MVPTSDKGRFYAFGRVFSGLVSTGLKVRIM AFGRVFSGLVSTGLKVRIMGPNYTPGKKED R V F L K V 0 0 0 0 0 0 0 2 0 0 2 1 0 1 0 2 1 0 0 2 0 0 11 0 1106.6336 P13639 P13639 416 426 EEF2 Elongation factor 2 yes yes 2 0.0009862 114.5 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 3 1 71421000 0 46146000 25275000 14306 547 15023 62885;62886;62887;62888 53127;53128;53129 53127 2 0 19782000 4902200 VFSIGPVFR PQLYKQMCICADFEKVFSIGPVFRAEDSNT CADFEKVFSIGPVFRAEDSNTHRHLTEFVG K V F F R A 0 1 0 0 0 0 0 1 0 1 0 0 0 2 1 1 0 0 0 2 0 0 9 0 1020.5757 P14868 P14868 265 273 DARS Aspartate--tRNA ligase, cytoplasmic yes yes 2 3.0608E-23 185.42 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 12789000 0 5835800 6953600 14307 566 15024 62889;62890;62891 53130;53131 53130 2 0 1936700 1164000 VFSLSSEFK NQLLKPTLSEIELFRVFSLSSEFKNITVRE EIELFRVFSLSSEFKNITVREEEKLELQKL R V F F K N 0 0 0 0 0 0 1 0 0 0 1 1 0 2 0 3 0 0 0 1 0 0 9 0 1042.5335 O75643 O75643 1017 1025 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 5.1382E-07 153.78 By matching By MS/MS By MS/MS 1.5 0.5 2 2 1 1 2 100290000 2608900 45885000 51800000 14308 277 15025 62892;62893;62894;62895 53132;53133;53134 53132 3 3143400 22428000 11208000 VFSNGADLSGVTEEAPLK TYDLKSVLGQLGITKVFSNGADLSGVTEEA NGADLSGVTEEAPLKLSKAVHKAVLTIDEK K V F L K L 2 0 1 1 0 0 2 2 0 0 2 1 0 1 1 2 1 0 0 2 0 0 18 0 1832.9156 P01009 P01009 335 352 SERPINA1 Alpha-1-antitrypsin;Short peptide from AAT yes yes 2 5.1935E-12 166.38 By MS/MS 5.33 3.2 1 1 1 1 1 1 6 107580000 107580000 0 0 14309 367 15026 62896;62897;62898;62899;62900;62901 53135;53136;53137;53138;53139 53138 5 77034000 0 0 VFSWGFGGYGR ACGANHTLVLDSQKRVFSWGFGGYGRLGHA SQKRVFSWGFGGYGRLGHAEQKDEMVPRLV R V F G R L 0 1 0 0 0 0 0 4 0 0 0 0 0 2 0 1 0 1 1 1 0 0 11 0 1231.5774 Q9P258 Q9P258 351 361 RCC2 Protein RCC2 yes yes 2 3.1006E-19 190.26 By matching By MS/MS By MS/MS 4.25 1.71 1 1 3 1 1 1 1 1 6 98063000 2027200 24469000 71567000 14310 2120 15027 62902;62903;62904;62905;62906;62907;62908;62909 53140;53141;53142;53143;53144;53145 53143 5 1581600 8120300 12361000 VFTEANLVSVGSK SAANKTIIYLDREKRVFTEANLVSVGSKKL KRVFTEANLVSVGSKKLRESVLRMSFEFHQ R V F S K K 1 0 1 0 0 0 1 1 0 0 1 1 0 1 0 2 1 0 0 3 0 0 13 0 1349.7191 Q9NU22 Q9NU22 2644 2656 MDN1 Midasin yes yes 2 0.06075 66.486 By MS/MS 1 0 1 1 2333600 0 2333600 0 14311 2056 15028 62910 53146 53146 1 0 1140600 0 VFTKPVDPDEVPDYVTVIK LRNVTHRLAIDKRFRVFTKPVDPDEVPDYV PVDPDEVPDYVTVIKQPMDLSSVISKIDLH R V F I K Q 0 0 0 3 0 0 1 0 0 1 0 2 0 1 3 0 2 0 1 5 0 0 19 1 2160.1354 Q6PL18 Q6PL18 1008 1026 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 3 0.0090108 50.397 By MS/MS 1.5 0.5 1 1 2 23773000 0 0 23773000 14312 1498 15029 62911;62912 53147;53148 53147 2 0 0 5238100 VFTMQDLLQLIK SLSVFFPESGLAKEKVFTMQDLLQLIKINP KEKVFTMQDLLQLIKINPTSSLYKSLVSGS K V F I K I 0 0 0 1 0 2 0 0 0 1 3 1 1 1 0 0 1 0 0 1 0 0 12 0 1447.8109 O75665 O75665 105 116 OFD1 Oral-facial-digital syndrome 1 protein yes yes 2 0.00026146 130.66 By MS/MS 2 0.816 1 1 1 3 3215500 0 0 3215500 14313 278 15030 62913;62914;62915 53149 53149 1 0 0 669180 VFTTQELVQAFTHAPATLEADR TLKETFLTSPEELYRVFTTQELVQAFTHAP VQAFTHAPATLEADRGGKFHMVDGNVSGEF R V F D R G 4 1 0 1 0 2 2 0 1 0 2 0 0 2 1 0 4 0 0 2 0 0 22 0 2444.2336 O95433 O95433 225 246 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 yes yes 3 3.7323E-11 103.73 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 7521700 0 3066400 4455300 14314 326 15031 62916;62917;62918 53150;53151;53152 53152 3 0 855530 621430 VFVGGLSPDTSEEQIK PKRAKALKGKEPPKKVFVGGLSPDTSEEQI FVGGLSPDTSEEQIKEYFGAFGEIENIELP K V F I K E 0 0 0 1 0 1 2 2 0 1 1 1 0 1 1 2 1 0 0 2 0 0 16 0 1704.857 O14979 O14979 235 250 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 1.7578E-05 151.98 By MS/MS By MS/MS By MS/MS 4.45 1.78 1 1 1 2 2 3 1 2 3 6 330630000 5410400 27541000 297680000 14315 157 15032 62919;62920;62921;62922;62923;62924;62925;62926;62927;62928;62929 53153;53154;53155;53156;53157;53158;53159 53153 7 6785300 9015800 44901000 VFVNPSLR PRQRALRQMEPFPLRVFVNPSLRVLDSRLV MEPFPLRVFVNPSLRVLDSRLVTFPEGCES R V F L R V 0 1 1 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 8 0 930.5287 Q9HBH1 Q9HBH1 152 159 PDF Peptide deformylase, mitochondrial yes yes 2 0.0042463 102.3 By MS/MS 7 0 1 1 4378500 0 4378500 0 14316 2007 15033 62930 53160 53160 1 0 2514200 0 VFYYLVQDLK SLIDVNQSKDPEGLRVFYYLVQDLKCLVFS PEGLRVFYYLVQDLKCLVFSLIGLHFKIKP R V F L K C 0 0 0 1 0 1 0 0 0 0 2 1 0 1 0 0 0 0 2 2 0 0 10 0 1286.6911 P61326;Q96A72 Q96A72 123 132 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 2 0.0061218 95.502 By MS/MS By MS/MS 8 0 2 1 1 23157000 0 2394100 20763000 14317 992;1748 15034 62931;62932 53161;53162 53162 2 0 1089200 3183200 VGAEELTADQNLK VKSHFIEIFLEELTKVGAEELTADQNLKFI TKVGAEELTADQNLKFIDPFCRIAARTKDS K V G L K F 2 0 1 1 0 1 2 1 0 0 2 1 0 0 0 0 1 0 0 1 0 0 13 0 1386.6991 P56182 P56182 180 192 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2 3.803E-25 204.5 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 72984000 0 16211000 56773000 14318 948 15035 62933;62934;62935 53163;53164;53165 53165 3 0 5379900 9486600 VGAGAPVYLAAVLEYLTAEILELAGNAAR GRVHRLLRKGNYAERVGAGAPVYLAAVLEY YLTAEILELAGNAARDNKKTRIIPRHLQLA R V G A R D 8 1 1 0 0 0 3 3 0 1 5 0 0 0 1 0 1 0 2 3 0 0 29 0 2914.5804 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;P16104;Q8IUE6;Q93077;Q7L7L0;P04908 Q99878 44 72 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;H2AFX;HIST2H2AB;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2AX;Histone H2A type 2-B;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3;4 6.9763E-39 143.48 By MS/MS By MS/MS 5.08 2.88 3 3 3 3 3 1 2 3 2 2 1 24 256980000 0 452220 256520000 14319 497;1740;574;1566 15036 62936;62937;62938;62939;62940;62941;62942;62943;62944;62945;62946;62947;62948;62949;62950;62951;62952;62953;62954;62955;62956;62957;62958;62959;62960 53166;53167;53168;53169;53170;53171;53172;53173;53174;53175;53176;53177;53178;53179;53180;53181;53182;53183;53184;53185 53183 20 0 205740 55130000 VGAGAPVYMAAVLEYLTAEILELAGNAAR GRVHRLLRKGNYAERVGAGAPVYMAAVLEY YLTAEILELAGNAARDNKKTRIIPRHLQLA R V G A R D 8 1 1 0 0 0 3 3 0 1 4 0 1 0 1 0 1 0 2 3 0 0 29 0 2932.5368 Q16777;Q6FI13 Q6FI13 44 72 HIST2H2AC;HIST2H2AA3 Histone H2A type 2-C;Histone H2A type 2-A no no 2;3;4 7.7098E-39 134.28 By MS/MS By MS/MS 5.64 2.94 2 1 1 1 2 1 4 1 1 1 13 133560000 0 261910 133300000 14320 1399;1473 15037;15038 62961;62962;62963;62964;62965;62966;62967;62968;62969;62970;62971;62972;62973;62974 53186;53187;53188;53189;53190;53191;53192;53193;53194;53195;53196;53197 53194 626 12 0 119160 24543000 VGAHAGEYGAEALER LSPADKTNVKAAWGKVGAHAGEYGAEALER VGAHAGEYGAEALERMFLSFPTTKTYFPHF K V G E R M 4 1 0 0 0 0 3 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 15 0 1528.727 P69905 P69905 18 32 HBA1 Hemoglobin subunit alpha yes yes 2;3 3.0736E-25 202.18 By MS/MS By MS/MS 6.4 2.85 2 1 2 3 1 2 3 3 3 17 3 414850000 407870000 0 6979400 14321 1082 15039 62975;62976;62977;62978;62979;62980;62981;62982;62983;62984;62985;62986;62987;62988;62989;62990;62991;62992;62993;62994 53198;53199;53200;53201;53202;53203;53204;53205;53206;53207;53208;53209;53210;53211;53212 53209 14 324050000 0 2881600 VGATAAVYSAAILEYLTAEVLELAGNASK RIHRHLKTRTTSHGRVGATAAVYSAAILEY YLTAEVLELAGNASKDLKVKRITPRHLQLA R V G S K D 8 0 1 0 0 0 3 2 0 1 4 1 0 0 0 2 2 0 2 3 0 0 29 0 2894.5277 Q71UI9;P0C0S5 Q71UI9 47 75 H2AFV;H2AFZ Histone H2A.V;Histone H2A.Z yes no 3 8.085E-07 57.803 By MS/MS 8 0 1 1 12478000 0 0 12478000 14322 496 15040 62995 53213 53213 1 0 0 1913100 VGDFGLAR LKTSNLLLSHAGILKVGDFGLAREYGSPLK SHAGILKVGDFGLAREYGSPLKAYTPVVVT K V G A R E 1 1 0 1 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 1 0 0 8 0 833.43955 P21127;Q9UQ88;Q13882 P21127 578 585 CDK11B;CDK11A;PTK6 Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A;Protein-tyrosine kinase 6 yes no 2 0.0017337 111.73 By MS/MS 2 0 1 1 7888200 0 0 7888200 14323 620 15041 62996 53214 53214 1 0 0 1782600 VGDFVATDLDTGRPSTTVR SKTYVVTGNMGSNDKVGDFVATDLDTGRPS VATDLDTGRPSTTVRYVMGNNPADLLAVDS K V G V R Y 1 2 0 3 0 0 0 2 0 0 1 0 0 1 1 1 4 0 0 3 0 0 19 1 2006.0069 Q02413 Q02413 404 422 DSG1 Desmoglein-1 yes yes 3 1.1982E-09 149.09 By MS/MS By MS/MS 5.6 2.98 2 1 1 2 1 2 2 2 2 7 8 202190000 115180000 0 87006000 14324 1146 15042 62997;62998;62999;63000;63001;63002;63003;63004;63005;63006;63007;63008;63009;63010;63011 53215;53216;53217;53218;53219;53220;53221;53222;53223;53224;53225 53218 11 111070000 0 27323000 VGDGVYLPPEAFTFNIK RVLYYSATKNGILYRVGDGVYLPPEAFTFN DGVYLPPEAFTFNIKLSSPVKRPRKEPVDE R V G I K L 1 0 1 1 0 0 1 2 0 1 1 1 0 2 2 0 1 0 1 2 0 0 17 0 1865.9564 P26358 P26358 935 951 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.0042402 77.358 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 24783000 0 8060500 16722000 14325 667 15043 63012;63013;63014;63015 53226;53227;53228;53229 53227 4 0 3703600 3667800 VGDTSLDPNDFDFTVTGR KAFRSKVELIAYFEKVGDTSLDPNDFDFTV TSLDPNDFDFTVTGRGSPSRREQKPPKKPK K V G G R G 0 1 1 4 0 0 0 2 0 0 1 0 0 2 1 1 3 0 0 2 0 0 18 0 1954.8909 P51608 P51608 145 162 MECP2 Methyl-CpG-binding protein 2 yes yes 2 1.3807E-16 180.09 By MS/MS 3.5 0.5 1 1 2 21084000 0 0 21084000 14326 896 15044 63016;63017 53230 53230 1 0 0 3787800 VGDVYIPR TSPDTLRRVFEKYGRVGDVYIPRDRYTKES VFEKYGRVGDVYIPRDRYTKESRGFAFVRF R V G P R D 0 1 0 1 0 0 0 1 0 1 0 0 0 0 1 0 0 0 1 2 0 0 8 0 917.49707 Q01130;Q9BRL6 Q01130 40 47 SRSF2;SRSF8 Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8 yes no 2 0.00082653 124.37 By MS/MS By MS/MS By MS/MS 6.5 2.92 1 1 3 1 2 1 4 3 232680000 26038000 72890000 133760000 14327 1131 15045 63018;63019;63020;63021;63022;63023;63024;63025 53231;53232;53233;53234;53235;53236;53237 53236 6 34669000 41865000 40716000 VGDYVYFENSSSNPYLIR ______________________________ YVYFENSSSNPYLIRRIEELNKTANGNVEA R V G I R R 0 1 2 1 0 0 1 1 0 1 1 0 0 1 1 3 0 0 3 2 0 0 18 0 2122.0007 Q13330;Q9BTC8 Q13330 8 25 MTA1;MTA3 Metastasis-associated protein MTA1;Metastasis-associated protein MTA3 yes no 2 2.4529E-16 176.05 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 14409000 0 1124900 13284000 14328 1239 15046 63026;63027;63028 53238;53239 53239 2 0 479560 2473200 VGDYVYFENSSSNPYLVR ______________________________ YVYFENSSSNPYLVRRIEELNKTANGNVEA R V G V R R 0 1 2 1 0 0 1 1 0 0 1 0 0 1 1 3 0 0 3 3 0 0 18 0 2107.9851 O94776 O94776 8 25 MTA2 Metastasis-associated protein MTA2 yes yes 2 9.4836E-23 191.26 By MS/MS 3 0 1 1 11881000 0 0 11881000 14329 298 15047 63029 53240 53240 1 0 0 2304400 VGEAAHALGNTGHEIGR RQVPGFGVADALGNRVGEAAHALGNTGHEI EAAHALGNTGHEIGRQAEDVIRHGADAVRG R V G G R Q 3 1 1 0 0 0 2 4 2 1 1 0 0 0 0 0 1 0 0 1 0 0 17 0 1687.839 CON__A3EZ82;Q6E0U4 CON__A3EZ82 99 115 DMKN Dermokine yes no 3;4 8.0859E-28 197.79 By MS/MS 6.55 1.88 1 1 1 2 2 2 2 11 109040000 109040000 0 0 + 14330 24 15048 63030;63031;63032;63033;63034;63035;63036;63037;63038;63039;63040 53241;53242;53243;53244 53244 4 97561000 0 0 VGEFSGANK VKCMPTFQFFKKGQKVGEFSGANKEKLEAT FKKGQKVGEFSGANKEKLEATINELV____ K V G N K E 1 0 1 0 0 0 1 2 0 0 0 1 0 1 0 1 0 0 0 1 0 0 9 0 907.43995 P10599 P10599 86 94 TXN Thioredoxin yes yes 2 0.00040447 135.77 By MS/MS 5.67 3.09 1 2 2 1 1 1 1 9 38887000 38887000 0 0 14331 512 15049 63041;63042;63043;63044;63045;63046;63047;63048;63049 53245;53246;53247;53248;53249;53250;53251;53252;53253 53247 9 50976000 0 0 VGEIFSAAGAAFTK ______________________________ KVGEIFSAAGAAFTKLGELTMQLHPVADSS K V G T K L 4 0 0 0 0 0 1 2 0 1 0 1 0 2 0 1 1 0 0 1 0 0 14 0 1367.7085 Q8IXM2 Q8IXM2 8 21 BAP18 Chromatin complexes subunit BAP18 yes yes 2 0.0033373 95.018 By MS/MS By MS/MS 7.5 0.5 2 2 2 2 45757000 0 12705000 33052000 14332 1583 15050 63050;63051;63052;63053 53254;53255;53256;53257 53257 4 0 6957200 5723400 VGELMDQNAFSLTQK HVFVIAELVNVLQERVGELMDQNAFSLTQK VGELMDQNAFSLTQK_______________ R V G Q K - 1 0 1 1 0 2 1 1 0 0 2 1 1 1 0 1 1 0 0 1 0 0 15 0 1679.8189 Q6ZYL4 Q6ZYL4 57 71 GTF2H5 General transcription factor IIH subunit 5 yes yes 2 0.00046219 112.13 By matching By MS/MS 10 0 2 1 1 11204000 0 3246500 7957200 14333 1511 15051 63054;63055 53258 53258 1 0 16425000 17403000 VGENADSQIK SSRQSIQKYIKSHYKVGENADSQIKLSIKR KSHYKVGENADSQIKLSIKRLVTTGVLKQT K V G I K L 1 0 1 1 0 1 1 1 0 1 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1059.5197 P07305 P07305 60 69 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2 0.0020499 107 By MS/MS By MS/MS 6 0 2 1 1 15704000 0 5590400 10113000 14334 457 15052 63056;63057 53259;53260 53260 2 0 1935200 1513100 VGEPVALSEEER PMAHPPNLGPPPPLRVGEPVALSEEERLKL PLRVGEPVALSEEERLKLAQQQAALLMQQE R V G E R L 1 1 0 0 0 0 4 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1313.6463 Q13435 Q13435 135 146 SF3B2 Splicing factor 3B subunit 2 yes yes 2 0.0061858 100.55 By MS/MS By MS/MS 2 0.707 1 2 1 3 1 36175000 0 8456000 27719000 14335 1248 15053 63058;63059;63060;63061 53261;53262;53263 53262 3 0 3744600 6264000 VGEPVALSEEERLK PMAHPPNLGPPPPLRVGEPVALSEEERLKL RVGEPVALSEEERLKLAQQQAALLMQQEER R V G L K L 1 1 0 0 0 0 4 1 0 0 2 1 0 0 1 1 0 0 0 2 0 0 14 1 1554.8253 Q13435 Q13435 135 148 SF3B2 Splicing factor 3B subunit 2 yes yes 2;3 0.0033137 122.7 By MS/MS 2 0 2 2 19719000 0 19719000 0 14336 1248 15054 63062;63063 53264;53265 53265 2 0 8879700 0 VGEQAQVVIIDMNDPSNPIR TLTMESDKFICIREKVGEQAQVVIIDMNDP QVVIIDMNDPSNPIRRPISADSAIMNPASK K V G I R R 1 1 2 2 0 2 1 1 0 3 0 0 1 0 2 1 0 0 0 3 0 0 20 0 2194.1052 Q00610 Q00610 44 63 CLTC Clathrin heavy chain 1 yes yes 2 1.5906E-140 271.56 By MS/MS 1.5 0.5 1 1 2 11483000 0 0 11483000 14337 1125 15055 63064;63065 53266 53266 1 0 0 2521500 VGEQPTLQLK YLGIQNPEMCLYCEKVGEQPTLQLKEQKIM LYCEKVGEQPTLQLKEQKIMDLYGQPEPVK K V G L K E 0 0 0 0 0 2 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 0 10 0 1111.6237 Q9NZH8 Q9NZH8 91 100 IL36G Interleukin-36 gamma yes yes 2 0.002475 105.52 By MS/MS 2 0.816 1 1 1 3 16364000 16364000 0 0 14338 2102 15056 63066;63067;63068 53267 53267 1 17529000 0 0 VGEVTYVELLMDAEGK FDVKWQSLKDLVKEKVGEVTYVELLMDAEG GEVTYVELLMDAEGKSRGCAVVEFKMEESM K V G G K S 1 0 0 1 0 0 3 2 0 0 2 1 1 0 0 0 1 0 1 3 0 0 16 0 1751.8652 P52272 P52272 95 110 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2;3 1.8638E-08 168.98 By MS/MS By MS/MS By MS/MS 3 1.06 2 2 7 4 1 2 5 9 138800000 4130100 14248000 120430000 14339 902 15057;15058 63069;63070;63071;63072;63073;63074;63075;63076;63077;63078;63079;63080;63081;63082;63083;63084 53268;53269;53270;53271;53272;53273;53274;53275;53276;53277;53278;53279;53280 53274 443 12 4765200 5250400 22589000 VGFAEAAR FIGRYYTVFDRDNNRVGFAEAARL______ FDRDNNRVGFAEAARL______________ R V G A R L 3 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 8 0 819.4239 P07339 P07339 404 411 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2 0.001671 112.59 By MS/MS 9.5 0.5 1 1 2 14635000 14635000 0 0 14340 458 15059 63085;63086 53281 53281 1 17437000 0 0 VGFQYQGIMQK LQAAAAHWQQHQQHRVGFQYQGIMQKHTQL QQHRVGFQYQGIMQKHTQLQQILQQYQQII R V G Q K H 0 0 0 0 0 3 0 2 0 1 0 1 1 1 0 0 0 0 1 1 0 0 11 0 1297.6489 P49750 P49750 398 408 YLPM1 YLP motif-containing protein 1 yes yes 2 0.00032832 130.27 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 25744000 1982200 4871800 18890000 14341 865 15060 63087;63088;63089;63090 53282;53283 53282 2 1982200 2381300 4104000 VGFYESDVMGR PQLQQYEMHGPEGLRVGFYESDVMGRGHAR EGLRVGFYESDVMGRGHARLVHVEEPHTET R V G G R G 0 1 0 1 0 0 1 2 0 0 0 0 1 1 0 1 0 0 1 2 0 0 11 0 1258.5652 P01023 P01023 705 715 A2M Alpha-2-macroglobulin yes yes 2 2.098E-07 160.56 By MS/MS By matching 9.5 0.5 1 1 1 1 18020000 17539000 0 481180 14342 370 15061 63091;63092 53284 53284 1 9844700 0 1052400 VGGFPNFLSNAFVSTAK VLGLVRVPLYTQKDRVGGFPNFLSNAFVST GFPNFLSNAFVSTAKCQLLFALKVLNMMPE R V G A K C 2 0 2 0 0 0 0 2 0 0 1 1 0 3 1 2 1 0 0 2 0 0 17 0 1754.8992 Q9BRJ7 Q9BRJ7 154 170 NUDT16L1 Protein syndesmos yes yes 2 0.0045899 85.536 By MS/MS By MS/MS 7 0 2 1 1 69961000 0 7893900 62067000 14343 1890 15062 63093;63094 53285;53286 53286 2 0 4532700 11013000 VGGHAAEYGAEALER LSAADKGNVKAAWGKVGGHAAEYGAEALER VGGHAAEYGAEALERMFLSFPTTKTYFPHF K V G E R M 4 1 0 0 0 0 3 3 1 0 1 0 0 0 0 0 0 0 1 1 0 0 15 0 1528.727 CON__P01966 CON__P01966 18 32 yes yes 2;3 5.3933E-73 241.31 By MS/MS By MS/MS By MS/MS 6.96 3.01 3 1 1 1 1 2 3 3 6 6 7 5 15 4112500000 1339200000 88148000 2685200000 + 14344 34 15063 63095;63096;63097;63098;63099;63100;63101;63102;63103;63104;63105;63106;63107;63108;63109;63110;63111;63112;63113;63114;63115;63116;63117;63118;63119;63120;63121 53287;53288;53289;53290;53291;53292;53293;53294;53295;53296;53297;53298;53299;53300;53301;53302;53303;53304;53305;53306;53307;53308;53309;53310;53311;53312;53313;53314 53308 27 802780000 301210000 1012000000 VGGMHETVLTVTGK KLDRLETFLRRLNNKVGGMHETVLTVTGKS KVGGMHETVLTVTGKSVKEVMKPDDDETFA K V G G K S 0 0 0 0 0 0 1 3 1 0 1 1 1 0 0 0 3 0 0 3 0 0 14 0 1427.7442 O95425 O95425 1281 1294 SVIL Supervillin yes yes 2 0.00041253 133.81 By MS/MS 1 0 1 1 7357300 0 0 7357300 14345 325 15064 63122 53315 53315 1 0 0 1585200 VGGNIEVLGFNAR LRNDKDKPLPPLLARVGGNIEVLGFNARQR ARVGGNIEVLGFNARQRKAFLNAIMRYGMP R V G A R Q 1 1 2 0 0 0 1 3 0 1 1 0 0 1 0 0 0 0 0 2 0 0 13 0 1344.715 Q14839;Q8TDI0 Q14839 1407 1419 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 6.2527E-17 185.61 By MS/MS By MS/MS By MS/MS 1.86 0.833 3 2 2 1 3 3 93713000 4119100 36908000 52686000 14346 1321;1662 15065 63123;63124;63125;63126;63127;63128;63129 53316;53317;53318;53319;53320;53321;53322 53320 7 4119100 17646000 11325000 VGGSDEEASGIPSR EAHRKKSLEGMKKARVGGSDEEASGIPSRT RVGGSDEEASGIPSRTASLELGEDDDEQED R V G S R T 1 1 0 1 0 0 2 3 0 1 0 0 0 0 1 3 0 0 0 1 0 0 14 0 1359.6266 Q9NQ55 Q9NQ55 356 369 PPAN Suppressor of SWI4 1 homolog yes yes 2 9.1994E-05 156.71 By MS/MS 3.5 0.5 1 1 2 8272700 0 0 8272700 14347 2032 15066 63130;63131 53323 53323 1 0 0 1456500 VGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPR VPQQIEVARQLIDEKVGGTNLGAPGAFGQS SQPPAPPHQNTFPPRSSGCFPNMAAKVNGN K V G P R S 3 1 2 0 0 3 0 5 1 0 1 0 0 3 8 2 2 0 0 1 0 0 32 0 3227.5901 Q96I24 Q96I24 425 456 FUBP3 Far upstream element-binding protein 3 yes yes 3;4 2.4731E-27 110.4 By MS/MS 3.57 0.495 3 4 7 85907000 0 85907000 0 14348 1797 15067 63132;63133;63134;63135;63136;63137;63138 53324;53325;53326;53327;53328;53329;53330;53331;53332;53333 53326 10 0 30144000 0 VGGTSDVEVNEK NERLAKLSDGVAVLKVGGTSDVEVNEKKDR VLKVGGTSDVEVNEKKDRVTDALNATRAAV K V G E K K 0 0 1 1 0 0 2 2 0 0 0 1 0 0 0 1 1 0 0 3 0 0 12 0 1232.5885 P10809 P10809 406 417 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 1.9609E-45 219.7 By MS/MS 3.5 0.5 1 1 2 38310000 0 0 38310000 14349 515 15068 63139;63140 53334;53335 53335 2 0 0 6944600 VGGVGPADTHEPLRPEAEPGELER WAEFRPIQQALAQERVGGVGPADTHEPLRP HEPLRPEAEPGELERERARRREERRKRFGM R V G E R E 2 2 0 1 0 0 5 4 1 0 2 0 0 0 4 0 1 0 0 2 0 0 24 1 2511.2354 Q6WCQ1 Q6WCQ1 560 583 MPRIP Myosin phosphatase Rho-interacting protein yes yes 4 3.4262E-10 90.534 By MS/MS 1.5 0.5 1 1 2 51361000 0 0 51361000 14350 1507 15069 63141;63142 53336 53336 1 0 0 11472000 VGGVGVPAAPSITAVTVNK SGIGYGFGGPGFGYRVGGVGVPAAPSITAV GVPAAPSITAVTVNKSLLTPLNLEIDPNAQ R V G N K S 3 0 1 0 0 0 0 3 0 1 0 1 0 0 2 1 2 0 0 5 0 0 19 0 1735.9832 CON__Q6ISB0;CON__Q9NSB2;Q9NSB2 CON__Q6ISB0 126 144 KRT84 Keratin, type II cuticular Hb4 yes no 2 0.0021727 73.082 By MS/MS By MS/MS 6 2 1 1 1 1 8588900 0 1998500 6590400 + 14351 92 15070 63143;63144 53337;53338 53337 2 0 909250 1076400 VGGYILGEFGNLIAGDPR FEALQAPACHENLVKVGGYILGEFGNLIAG YILGEFGNLIAGDPRSSPLIQFHLLHSKFH K V G P R S 1 1 1 1 0 0 1 5 0 2 2 0 0 1 1 0 0 0 1 1 0 0 18 0 1846.9577 O94973;O95782 O94973 498 515 AP2A2;AP2A1 AP-2 complex subunit alpha-2;AP-2 complex subunit alpha-1 no no 2;3 0.013495 63.091 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 6752000 0 1421600 5330400 14352 306;339 15071 63145;63146;63147 53339;53340;53341 53341 3 0 640170 1064600 VGHSELVGEIIR TACDMAGAAMYELVRVGHSELVGEIIRLEG LVRVGHSELVGEIIRLEGDMATIQVYEETS R V G I R L 0 1 0 0 0 0 2 2 1 2 1 0 0 0 0 1 0 0 0 2 0 0 12 0 1307.7197 P38606 P38606 45 56 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 3 0.0064202 77.062 By MS/MS 3 0 1 1 8179300 0 0 8179300 14353 773 15072 63148 53342 53342 1 0 0 1586400 VGIIAWHPTAR PLTEPVVVLEGHTKRVGIIAWHPTARNVLL HTKRVGIIAWHPTARNVLLSAGCDNVVLIW R V G A R N 2 1 0 0 0 0 0 1 1 2 0 0 0 0 1 0 1 1 0 1 0 0 11 0 1219.6826 Q9BR76 Q9BR76 135 145 CORO1B Coronin-1B yes yes 3 0.0039324 83.397 By MS/MS By MS/MS 4.83 1.34 1 2 1 1 1 2 4 28514000 0 7394500 21119000 14354 1887 15073 63149;63150;63151;63152;63153;63154 53343;53344 53344 2 0 2502500 3405300 VGILLDEASGVNK KFDLLVDANDVILERVGILLDEASGVNKNQ ERVGILLDEASGVNKNQQPVLPAGLQVPKT R V G N K N 1 0 1 1 0 0 1 2 0 1 2 1 0 0 0 1 0 0 0 2 0 0 13 0 1313.7191 Q01780 Q01780 124 136 EXOSC10 Exosome component 10 yes yes 2 0.00037181 126.39 By MS/MS 2 0 1 1 7597100 0 7597100 0 14355 1138 15074 63155 53345 53345 1 0 3421100 0 VGINYQPPTVVPGGDLAK KRSIQFVDWCPTGFKVGINYQPPTVVPGGD NYQPPTVVPGGDLAKVQRAVCMLSNTTAIA K V G A K V 1 0 1 1 0 1 0 3 0 1 1 1 0 0 3 0 1 0 1 3 0 0 18 0 1823.9781 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 353 370 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 2;3 1.3925E-08 130.69 By MS/MS By MS/MS By MS/MS 5.36 2.53 1 2 2 5 3 2 1 2 3 1 1 11 10 7678300000 46862000 3402000000 4229500000 14356 1077;1515;1883;1078 15075 63156;63157;63158;63159;63160;63161;63162;63163;63164;63165;63166;63167;63168;63169;63170;63171;63172;63173;63174;63175;63176;63177 53346;53347;53348;53349;53350;53351;53352;53353;53354;53355;53356;53357;53358;53359;53360;53361;53362;53363;53364;53365;53366;53367;53368;53369;53370;53371;53372;53373;53374;53375;53376;53377;53378;53379;53380;53381;53382;53383;53384;53385;53386 53352 41 36561000 1047600000 768310000 VGINYQPPTVVPGGDLAKVQR KRSIQFVDWCPTGFKVGINYQPPTVVPGGD PPTVVPGGDLAKVQRAVCMLSNTTAIAEAW K V G Q R A 1 1 1 1 0 2 0 3 0 1 1 1 0 0 3 0 1 0 1 4 0 0 21 1 2207.2063 P68363;P68366;Q71U36;P0DPH8;P0DPH7;Q6PEY2;Q9BQE3 P68363 353 373 TUBA1B;TUBA4A;TUBA1A;TUBA3E;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-3E chain;Tubulin alpha-1C chain no no 3 0.00021454 70.917 By MS/MS By matching 4.67 0.471 1 2 2 1 32719000 0 25682000 7036600 14357 1077;1515;1883;1078 15076 63178;63179;63180 53387;53388 53388 2 0 7437400 981480 VGIQELGPR IFFRFHRYIFRSEKKVGIQELGPRFTLKLR FRSEKKVGIQELGPRFTLKLRSLQKGTFDS K V G P R F 0 1 0 0 0 1 1 2 0 1 1 0 0 0 1 0 0 0 0 1 0 0 9 0 967.54508 Q9H9Y2 Q9H9Y2 303 311 RPF1 Ribosome production factor 1 yes yes 2 0.00055135 126.28 By MS/MS 5 0 1 1 6044500 0 6044500 0 14358 1999 15077 63181 53389 53389 1 0 1558100 0 VGIQQGLLSQSTR GRLNARPGVGGVRSRVGIQQGLLSQSTRTA SRVGIQQGLLSQSTRTATFQQRFDARQKIG R V G T R T 0 1 0 0 0 3 0 2 0 1 2 0 0 0 0 2 1 0 0 1 0 0 13 0 1385.7627 Q9BY77 Q9BY77 34 46 POLDIP3 Polymerase delta-interacting protein 3 yes yes 2 0.00030053 141.08 By MS/MS By MS/MS 7 2.12 1 2 2 1 2 4 4 75491000 0 35378000 40112000 14359 1933 15078 63182;63183;63184;63185;63186;63187;63188;63189 53390;53391;53392;53393;53394;53395;53396 53391 6 0 26056000 10568000 VGIVAWHPTAR SLTEPVVILEGHSKRVGIVAWHPTARNVLL HSKRVGIVAWHPTARNVLLSAGCDNAIIIW R V G A R N 2 1 0 0 0 0 0 1 1 1 0 0 0 0 1 0 1 1 0 2 0 0 11 0 1205.6669 Q9ULV4 Q9ULV4 133 143 CORO1C Coronin-1C yes yes 2;3 0.00032808 128.57 By matching By MS/MS By MS/MS 4.13 2.33 2 2 2 4 1 2 1 1 3 5 7 281050000 11315000 38655000 231080000 14360 2192 15079 63190;63191;63192;63193;63194;63195;63196;63197;63198;63199;63200;63201;63202;63203;63204 53397;53398;53399;53400;53401;53402;53403;53404;53405 53403 9 13275000 13849000 39502000 VGLIHMLTHLAEALHQAR GFVVEVWNQLLSQKRVGLIHMLTHLAEALH IHMLTHLAEALHQARLLALLVIPPAITPGT R V G A R L 3 1 0 0 0 1 1 1 3 1 4 0 1 0 0 0 1 0 0 1 0 0 18 0 2009.0993 Q9BWS9 Q9BWS9 203 220 CHID1 Chitinase domain-containing protein 1 yes yes 3;4 2.3729E-06 106.35 By MS/MS 4.67 0.471 1 2 3 11995000 0 0 11995000 14361 1926 15080 63205;63206;63207 53406;53407;53408 53406 2 0 0 1680600 VGLNFSPGQSFPASQAHLR GDSARYEIEHCLANKVGLNFSPGQSFPASQ FSPGQSFPASQAHLRVTASPQSLCALRAVD K V G L R V 2 1 1 0 0 2 0 2 1 0 2 0 0 2 2 3 0 0 0 1 0 0 19 0 2012.0228 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 568 586 yes yes 3 1.7781E-09 144.25 By MS/MS By MS/MS By MS/MS 4.27 3.57 2 3 3 3 4 3 4 99029000 50082000 27719000 21228000 + 14362 28 15081 63208;63209;63210;63211;63212;63213;63214;63215;63216;63217;63218 53409;53410;53411;53412;53413;53414;53415;53416;53417 53411 9 61903000 43956000 11347000 VGLPLLSPEFLLTGVLK ITCPQDFPHCSIPLRVGLPLLSPEFLLTGV LPLLSPEFLLTGVLKQEAKPEAFVLSPLEM R V G L K Q 0 0 0 0 0 0 1 2 0 0 6 1 0 1 2 1 1 0 0 2 0 0 17 0 1795.0859 Q14676 Q14676 2055 2071 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2;3 0.012286 66.393 By MS/MS By MS/MS 2.25 1.56 3 3 1 1 2 6 48466000 0 2847000 45619000 14363 1310 15082 63219;63220;63221;63222;63223;63224;63225;63226 53418;53419;53420;53421;53422;53423 53423 6 0 1310500 9774600 VGLQVVAVK VDGEALSTLVLNRLKVGLQVVAVKAPGFGD VLNRLKVGLQVVAVKAPGFGDNRKNQLKDM K V G V K A 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 4 0 0 9 0 911.5804 P10809 P10809 293 301 HSPD1 60 kDa heat shock protein, mitochondrial yes yes 2 0.0006003 133.81 By MS/MS By MS/MS By MS/MS 3.67 0.471 1 2 1 1 1 40897000 7823700 20361000 12713000 14364 515 15083 63227;63228;63229 53424;53425;53426 53425 3 6103900 6757200 2465600 VGLTNYAAAYCTGLLLAR VCAAYAHELPKYGVKVGLTNYAAAYCTGLL TNYAAAYCTGLLLARRLLNRFGMDKIYEGQ K V G A R R 4 1 1 0 1 0 0 2 0 0 4 0 0 0 0 0 2 0 2 1 0 0 18 0 1926.0033 P46777 P46777 90 107 RPL5 60S ribosomal protein L5 yes yes 2;3 6.4487E-09 143.31 By MS/MS By MS/MS 6.14 0.833 1 5 1 3 4 92003000 0 13055000 78948000 14365 828 15084 63230;63231;63232;63233;63234;63235;63236 53427;53428;53429;53430 53430 4 0 4335300 11858000 VGMVETNSQDRPVDDVK TIFGRVCQGIGMVNRVGMVETNSQDRPVDD MVETNSQDRPVDDVKIIKAYPSG_______ R V G V K I 0 1 1 3 0 1 1 1 0 0 0 1 1 0 1 1 1 0 0 4 0 0 17 1 1887.8996 Q9Y3C6 Q9Y3C6 142 158 PPIL1 Peptidyl-prolyl cis-trans isomerase-like 1 yes yes 2;3 4.044E-26 196.15 By MS/MS By MS/MS 7.75 0.433 1 3 1 3 40461000 0 2560100 37901000 14366 2269 15085 63237;63238;63239;63240 53431;53432;53433 53432 3 0 1164800 5913500 VGNALWR SAASLWGPYKDIWHKVGNALWRRQPEAVHL PYKDIWHKVGNALWRRQPEAVHLLDKILKK K V G W R R 1 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 0 7 0 814.44497 Q92621 Q92621 24 30 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.0035752 130.01 By MS/MS 1 0 1 1 7927200 0 0 7927200 14367 1714 15086 63241 53434 53434 1 0 0 1708000 VGNIIDTMITDAFLK FHTRNSLHRRAYQHKVGNIIDTMITDAFLK VGNIIDTMITDAFLKADDYIEITGAGGKKY K V G L K A 1 0 1 2 0 0 0 1 0 3 1 1 1 1 0 0 2 0 0 1 0 0 15 0 1649.8698 Q9Y3Z3 Q9Y3Z3 378 392 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 yes yes 2 0.00038036 116.54 By MS/MS 3 0 1 1 6761600 0 0 6761600 14368 2281 15087 63242 53435 53435 1 0 0 1311400 VGNLGLATSFFNER SDIEEYVHRIGRTGRVGNLGLATSFFNERN RVGNLGLATSFFNERNINITKDLLDLLVEA R V G E R N 1 1 2 0 0 0 1 2 0 0 2 0 0 2 0 1 1 0 0 1 0 0 14 0 1523.7732 O00571 O00571 535 548 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2;3 7.7418E-58 230.41 By MS/MS By MS/MS By MS/MS 3.5 1.83 4 2 5 3 2 3 1 3 9 8 606480000 25566000 204660000 376260000 14369 131 15088 63243;63244;63245;63246;63247;63248;63249;63250;63251;63252;63253;63254;63255;63256;63257;63258;63259;63260;63261;63262 53436;53437;53438;53439;53440;53441;53442;53443;53444;53445;53446;53447;53448;53449;53450;53451 53447 16 27702000 83314000 71508000 VGPDVVTDPAFLVTR HLQAAVAFVEQGHVRVGPDVVTDPAFLVTR VGPDVVTDPAFLVTRSMEDFVTWVDSSKIK R V G T R S 1 1 0 2 0 0 0 1 0 0 1 0 0 1 2 0 2 0 0 4 0 0 15 0 1584.8512 Q9NV31 Q9NV31 138 152 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 yes yes 2 0.0024811 88.803 By MS/MS By MS/MS 7.33 0.471 2 1 1 2 115760000 0 23832000 91924000 14370 2063 15089 63263;63264;63265 53452;53453;53454 53453 3 0 13684000 15683000 VGPEELPVVGQLLR PRVLRLMLQSLRVNRVGPEELPVVGQLLRL RVGPEELPVVGQLLRLLLQHAPLRTHMLTN R V G L R L 0 1 0 0 0 1 2 2 0 0 3 0 0 0 2 0 0 0 0 3 0 0 14 0 1504.8613 Q9NXF1 Q9NXF1 852 865 TEX10 Testis-expressed sequence 10 protein yes yes 2 0.0020884 102.06 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 11691000 0 6697600 4993000 14371 2089 15090 63266;63267 53455;53456;53457 53455 3 0 3016000 968410 VGPNATYNFSQSLNANDLANSRPK NKSEMAFKAQNATTKVGPNATYNFSQSLNA SQSLNANDLANSRPKTPFKAWNDTTKAPTA K V G P K T 3 1 5 1 0 1 0 1 0 0 2 1 0 1 2 3 1 0 1 1 0 0 24 1 2577.2572 Q9Y5V3 Q9Y5V3 155 178 MAGED1 Melanoma-associated antigen D1 yes yes 3 1.7692E-12 108.5 By MS/MS 2.5 0.5 1 1 2 6720600 0 6720600 0 14372 2303 15091 63268;63269 53458 53458 1 0 2975200 0 VGQALELPLR EPHSMEFAPCQVEARVGQALELPLRISGLM QVEARVGQALELPLRISGLMPGGASEVVTL R V G L R I 1 1 0 0 0 1 1 1 0 0 3 0 0 0 1 0 0 0 0 1 0 0 10 0 1094.6448 Q8TEM1 Q8TEM1 549 558 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.00059047 116.05 By MS/MS 1 0 1 1 9979000 0 0 9979000 14373 1666 15092 63270 53459 53459 1 0 0 2150100 VGQDPVLR LVLERSLNRVHLLGRVGQDPVLRQVEGKNP RVHLLGRVGQDPVLRQVEGKNPVTIFSLAT R V G L R Q 0 1 0 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 2 0 0 8 0 882.49232 Q04837 Q04837 39 46 SSBP1 Single-stranded DNA-binding protein, mitochondrial yes yes 2 0.0002785 133.6 By MS/MS 9 0 1 1 5352100 0 5352100 0 14374 1161 15093 63271 53460 53460 1 0 4285700 0 VGQEIEVRPGIVSK KGGVAGGSILKGVLKVGQEIEVRPGIVSKD KVGQEIEVRPGIVSKDSEGKLMCKPIFSKI K V G S K D 0 1 0 0 0 1 2 2 0 2 0 1 0 0 1 1 0 0 0 3 0 0 14 1 1509.8515 P41091 P41091 290 303 EIF2S3 Eukaryotic translation initiation factor 2 subunit 3 yes yes 2;3 4.4218E-24 202.27 By MS/MS By MS/MS 4.56 1.42 1 4 4 4 3 2 8 10 845710000 0 302750000 542960000 14375 790 15094 63272;63273;63274;63275;63276;63277;63278;63279;63280;63281;63282;63283;63284;63285;63286;63287;63288;63289 53461;53462;53463;53464;53465;53466;53467;53468;53469;53470;53471;53472 53465 11 0 96445000 85724000 VGQETFYDVYR FVLGGTMEWIMIKVRVGQETFYDVYRRKAS IKVRVGQETFYDVYRRKASERQYQRRLEDE R V G Y R R 0 1 0 1 0 1 1 1 0 0 0 0 0 1 0 0 1 0 2 2 0 0 11 0 1375.6408 Q8WVI0 Q8WVI0 45 55 SMIM4 Small integral membrane protein 4 yes yes 2 7.2902E-14 182.39 By MS/MS By MS/MS 10 0 2 1 1 34198000 0 7705600 26492000 14376 1681 15095 63290;63291 53473;53474 53474 2 0 38984000 57941000 VGQLSEGAIAAIMQK ______________________________ VGQLSEGAIAAIMQKGDTNIKPILQVINIR M V G Q K G 3 0 0 0 0 2 1 2 0 2 1 1 1 0 0 1 0 0 0 1 0 0 15 0 1514.8127 P27694 P27694 2 16 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 0.002139 90.146 By MS/MS 3 0 1 1 4206100 0 4206100 0 14377 679 15096 63292 53475 53475 1 0 1793100 0 VGQTAFDVADEDILGYLEELQK RILVDNLCDMEMVNKVGQTAFDVADEDILG VADEDILGYLEELQKKQNLLHSEKRDKKSP K V G Q K K 2 0 0 3 0 2 3 2 0 1 3 1 0 1 0 0 1 0 1 2 0 0 22 0 2452.201 O14974 O14974 264 285 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes yes 2;3 1.5126E-20 148.2 By MS/MS 2 0 2 2 20162000 0 0 20162000 14378 156 15097 63293;63294 53476;53477 53476 2 0 0 4556300 VGQTIER GMGFGLERMAAPIDRVGQTIERMGSGVERM RMAAPIDRVGQTIERMGSGVERMGPAIERM R V G E R M 0 1 0 0 0 1 1 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 7 0 801.43447 P52272 P52272 504 510 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 2 1.004E-11 175.75 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 14606000 0 5931300 8674700 14379 902 15098 63295;63296;63297 53478;53479;53480;53481 53478 4 0 2528500 1672200 VGRPSNIGQAQPIIDQLAEEAR LEQMNSVMLGGRNIKVGRPSNIGQAQPIID GQAQPIIDQLAEEARAFNRIYVASVHQDLS K V G A R A 3 2 1 1 0 3 2 2 0 3 1 0 0 0 2 1 0 0 0 1 0 0 22 1 2361.2401 Q9UHX1 Q9UHX1 202 223 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 3 5.1778E-12 109.83 By MS/MS By MS/MS 4 0 2 1 1 21200000 0 12210000 8990100 14380 2158 15099 63298;63299 53482;53483 53482 2 0 4052200 1468400 VGSAADIPINISETDLSLLTATVVPPSGR ARVTGDDSMRMSHLKVGSAADIPINISETD DLSLLTATVVPPSGREEPCLLKRLRNGHVG K V G G R E 3 1 1 2 0 0 1 2 0 3 3 0 0 0 3 4 3 0 0 3 0 0 29 0 2892.5444 P21333 P21333 1965 1993 FLNA Filamin-A yes yes 3 1.2447E-08 72.791 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 21249000 0 5261300 15988000 14381 623 15100 63300;63301;63302;63303 53484;53485;53486 53485 3 0 2571600 3452300 VGSEVPGTVISFVTHPWDVSLVQK PTLQDYIHRAGRVGRVGSEVPGTVISFVTH ISFVTHPWDVSLVQKIELAARRRRSLPGLA R V G Q K I 0 0 0 1 0 1 1 2 1 1 1 1 0 1 2 3 2 1 0 6 0 0 24 0 2580.3588 Q9NUL7 Q9NUL7 491 514 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 3 0.0050224 41.482 By MS/MS 4 0 1 1 2356700 0 2356700 0 14382 2061 15101 63304 53487 53487 1 0 782110 0 VGSHITGGDIYGIVSENSLIK SRDIKWDFTPCKNLRVGSHITGGDIYGIVS GGDIYGIVSENSLIKHKIMLPPRNRGTVTY R V G I K H 0 0 1 1 0 0 1 4 1 4 1 1 0 0 0 3 1 0 1 2 0 0 21 0 2158.127 P38606 P38606 143 163 ATP6V1A V-type proton ATPase catalytic subunit A yes yes 3 0.0014752 58.339 By matching By MS/MS By MS/MS 3 0 3 1 1 1 12335000 1709500 3207500 7417600 14383 773 15102 63305;63306;63307 53488;53489 53488 2 1972400 1367400 1438700 VGSLDNVGHLPAGGAVK IESQKLNFKEKAQAKVGSLDNVGHLPAGGA SLDNVGHLPAGGAVKTEGGGSEAPLCPGPP K V G V K T 2 0 1 1 0 0 0 4 1 0 2 1 0 0 1 1 0 0 0 3 0 0 17 0 1589.8526 P27816 P27816 1071 1087 MAP4 Microtubule-associated protein 4 yes yes 2;3 8.8256E-06 147.58 By matching By MS/MS By MS/MS 3.29 1.87 3 3 2 2 2 1 1 1 5 8 329530000 7789000 58898000 262840000 14384 683 15103 63308;63309;63310;63311;63312;63313;63314;63315;63316;63317;63318;63319;63320;63321 53490;53491;53492;53493;53494;53495;53496 53495 7 7789000 22486000 54335000 VGSPERPLSDLGLISYR MLIDFSYLLSKVEEKVGSPERPLSDLGLIS SPERPLSDLGLISYRSYWKEVLLRYLHNFQ K V G Y R S 0 2 0 1 0 0 1 2 0 1 3 0 0 0 2 3 0 0 1 1 0 0 17 1 1857.9949 O95251 O95251 504 520 KAT7 Histone acetyltransferase KAT7 yes yes 2;3 3.466E-47 223.39 By MS/MS By MS/MS 3.25 0.433 3 1 1 3 52688000 0 9319600 43369000 14385 316 15104 63322;63323;63324;63325 53497;53498;53499 53499 3 0 3972900 7943100 VGSTSENITQK ARDFLDEYIFLAVGRVGSTSENITQKVVWV AVGRVGSTSENITQKVVWVEESDKRSFLLD R V G Q K V 0 0 1 0 0 1 1 1 0 1 0 1 0 0 0 2 2 0 0 1 0 0 11 0 1162.583 O00571;O15523 O00571 408 418 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.0064901 98.055 By MS/MS 3.5 0.5 1 1 2 6280200 0 6280200 0 14386 131 15105 63326;63327 53500 53500 1 0 2655500 0 VGSVEEFQGQER LDRELRGLDDIKDLKVGSVEEFQGQERSVI DLKVGSVEEFQGQERSVILISTVRSSQSFV K V G E R S 0 1 0 0 0 2 3 2 0 0 0 0 0 1 0 1 0 0 0 2 0 0 12 0 1363.6368 Q9HCE1 Q9HCE1 862 873 MOV10 Putative helicase MOV-10 yes yes 2 3.626E-12 180.36 By MS/MS 2.5 0.5 1 1 2 7457600 0 7457600 0 14387 2011 15106 63328;63329 53501 53501 1 0 3302800 0 VGTAQLALVAR LGAHALLANGSVMSRVGTAQLALVARAHNV VMSRVGTAQLALVARAHNVPVLVCCETYKF R V G A R A 3 1 0 0 0 1 0 1 0 0 2 0 0 0 0 0 1 0 0 2 0 0 11 0 1097.6557 Q9UI10 Q9UI10 418 428 EIF2B4 Translation initiation factor eIF-2B subunit delta yes yes 2 0.026718 80.455 By MS/MS By MS/MS 4 0 2 1 1 11381000 0 6193200 5187300 14388 2160 15107 63330;63331 53502;53503 53502 1 0 2055300 847260 VGTSFSIPVVSDVR IKNPVSDHFPVGCMKVGTSFSIPVVSDVRE KVGTSFSIPVVSDVRELVPSSDPIVFVVGA K V G V R E 0 1 0 1 0 0 0 1 0 1 0 0 0 1 1 3 1 0 0 4 0 0 14 0 1461.7827 Q92979 Q92979 174 187 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 0.0001551 152.85 By MS/MS By MS/MS 7.8 1.47 1 2 1 1 1 4 104740000 0 33751000 70985000 14389 1736 15108 63332;63333;63334;63335;63336 53504;53505;53506;53507;53508 53504 5 0 19380000 14990000 VGTVIGSNKLEQMPSKEDAIEHFMK DDKENRYWIFRSWGRVGTVIGSNKLEQMPS EQMPSKEDAIEHFMKLYEEKTGNAWHSKNF R V G M K L 1 0 1 1 0 1 3 2 1 2 1 3 2 1 1 2 1 0 0 2 0 0 25 2 2787.3935 P09874 P09874 592 616 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 4;5 1.0413E-37 180.66 By MS/MS By MS/MS 1.75 0.433 2 6 4 4 179700000 0 90257000 89444000 14390 492 15109;15110 63337;63338;63339;63340;63341;63342;63343;63344 53509;53510;53511;53512;53513;53514 53511 207;208 6 0 40644000 20019000 VGVEVPDVNIEGPEGK DVNLPKADVDISGPKVGVEVPDVNIEGPEG GVEVPDVNIEGPEGKLKGPKFKMPEMNIKA K V G G K L 0 0 1 1 0 0 3 3 0 1 0 1 0 0 2 0 0 0 0 4 0 0 16 0 1636.8308 Q09666 Q09666 913 928 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.026538 83.137 By MS/MS 1 0 1 1 2475100 0 2475100 0 14391 1190 15111 63345 53515 53515 0 0 1209800 0 VGVIGFPNVGK KLLGGFQETCSKAIRVGVIGFPNVGKSSII KAIRVGVIGFPNVGKSSIINSLKQEQMCNV R V G G K S 0 0 1 0 0 0 0 3 0 1 0 1 0 1 1 0 0 0 0 3 0 0 11 0 1085.6233 Q9BVP2 Q9BVP2 257 267 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.0026527 107.29 By matching By MS/MS By MS/MS 3 0 3 1 1 1 40333000 2363200 14756000 23214000 14392 1917 15112 63346;63347;63348 53516;53517 53517 2 2726600 6290400 4502400 VGVKEELLAVGK TPTHTKQQLKASLGKVGVKEELLAVGKFTR LGKVGVKEELLAVGKFTRTSGETTHTHREP K V G G K F 1 0 0 0 0 0 2 2 0 0 2 2 0 0 0 0 0 0 0 3 0 0 12 1 1240.7391 P46013 P46013 1032 1043 MKI67 Antigen KI-67 yes no 3 0.01031 74.46 By MS/MS 2 0.816 1 1 1 3 22215000 0 0 22215000 14393 821 15113 63349;63350;63351 53518;53519 53519 2 0 0 4784900 VGVKEEVLPVGK TPTSSKQRLKISLGKVGVKEEVLPVGKLTQ LGKVGVKEEVLPVGKLTQTSGKTTQTHRET K V G G K L 0 0 0 0 0 0 2 2 0 0 1 2 0 0 1 0 0 0 0 4 0 0 12 1 1252.7391 P46013 P46013 2006 2017 MKI67 Antigen KI-67 yes yes 3 0.021115 64.55 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 46728000 0 11953000 34775000 14394 821 15114 63352;63353;63354;63355;63356;63357 53520;53521;53522;53523 53520 4 0 5723700 7352600 VGVNGFGR ______________________________ ______________________________ K V G G R I 0 1 1 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 2 0 0 8 0 804.42424 P04406 P04406 6 13 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 0.00063662 127.1 By MS/MS By matching 5.25 2.49 1 1 2 3 1 28485000 26985000 1499500 0 14395 415 15115 63358;63359;63360;63361 53524;53525;53526 53525 3 40713000 861040 0 VGVTALQQAPAVDVVAIGLMSGQVIIHNIK NVKSNKLLYTFPGWKVGVTALQQAPAVDVV AIGLMSGQVIIHNIKFNETLMKFRQDWGPI K V G I K F 4 0 1 1 0 3 0 3 1 4 2 1 1 0 1 1 1 0 0 6 0 0 30 0 3040.7107 Q8NI36 Q8NI36 248 277 WDR36 WD repeat-containing protein 36 yes yes 3 4.5445E-12 69.782 By MS/MS 2 0.816 1 1 1 3 10997000 0 0 10997000 14396 1648 15116 63362;63363;63364 53527;53528 53527 2 0 0 2384700 VGWEQLLTTIAR IFDNKHTNYTMEHIRVGWEQLLTTIARTIN HIRVGWEQLLTTIARTINEVENQILTRDAK R V G A R T 1 1 0 0 0 1 1 1 0 1 2 0 0 0 0 0 2 1 0 1 0 0 12 0 1385.7667 O43707;P12814 O43707 734 745 ACTN4;ACTN1 Alpha-actinin-4;Alpha-actinin-1 no no 2;3 6.533E-12 176.41 By matching By MS/MS By MS/MS 3.15 1.79 2 4 3 1 1 1 1 1 7 5 386420000 296240 349070000 37051000 14397 210;540 15117 63365;63366;63367;63368;63369;63370;63371;63372;63373;63374;63375;63376;63377 53529;53530;53531;53532;53533;53534;53535;53536;53537;53538;53539 53537 11 356940 155700000 7512300 VGWSVDFSRPQLGEDEFSYGFDGR NLPMKEGCTEVSLLRVGWSVDFSRPQLGED PQLGEDEFSYGFDGRGLKAENGQFEEFGQT R V G G R G 0 2 0 3 0 1 2 4 0 0 1 0 0 3 1 3 0 1 1 2 0 0 24 1 2749.2409 Q1KMD3 Q1KMD3 316 339 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 3 1.2162E-11 99.838 By MS/MS 2 0 1 1 26354000 0 0 26354000 14398 1404 15118 63378 53540 53540 1 0 0 5955400 VGYELKDEIER LAARVDSFHESTEGKVGYELKDEIERKFDK TEGKVGYELKDEIERKFDKWQEPPPVKQVK K V G E R K 0 1 0 1 0 0 3 1 0 1 1 1 0 0 0 0 0 0 1 1 0 0 11 1 1349.6827 Q8WWY3 Q8WWY3 316 326 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 2;3 0.01853 94.309 By MS/MS 4.33 0.471 2 1 3 21118000 0 0 21118000 14399 1691 15119 63379;63380;63381 53541;53542 53541 2 0 0 3354300 VGYTPDWIFLLR AETGQVQKIVLYAKKVGYTPDWIFLLRNVM AKKVGYTPDWIFLLRNVMRISPDQGQQFAQ K V G L R N 0 1 0 1 0 0 0 1 0 1 2 0 0 1 1 0 1 1 1 1 0 0 12 0 1478.7922 Q00610;P53675 Q00610 508 519 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 8.1716E-18 189.38 By MS/MS By MS/MS 1.67 0.745 3 2 1 2 4 116430000 0 8341900 108090000 14400 1125 15120 63382;63383;63384;63385;63386;63387 53543;53544;53545;53546;53547;53548 53547 6 0 3792800 23078000 VHELNEEIGK TQEEISAEVAAKAERVHELNEEIGKLLAKV AKAERVHELNEEIGKLLAKVEQLGAEGNVE R V H G K L 0 0 1 0 0 0 3 1 1 1 1 1 0 0 0 0 0 0 0 1 0 0 10 0 1166.5932 Q9NQ29;Q9Y383 Q9Y383 126 135 LUC7L;LUC7L2 Putative RNA-binding protein Luc7-like 1;Putative RNA-binding protein Luc7-like 2 no no 2 0.00010856 145.84 By matching By MS/MS By MS/MS 4.8 0.748 2 2 1 1 1 3 89346000 1364100 6559400 81422000 14401 2259;2030 15121 63388;63389;63390;63391;63392 53549;53550;53551 53551 3 1064300 1690800 11657000 VHFEESSKLEDLLR FYRDIISIAEDEDLRVHFEESSKLEDLLRK RVHFEESSKLEDLLRKVRAKETRKRALSRL R V H L R K 0 1 0 1 0 0 3 0 1 0 3 1 0 1 0 2 0 0 0 1 0 0 14 1 1700.8733 P12956 P12956 231 244 XRCC6 X-ray repair cross-complementing protein 6 yes yes 2;3;4 3.6233E-44 220.25 By MS/MS 2.75 0.433 1 3 4 34915000 0 0 34915000 14402 541 15122 63393;63394;63395;63396 53552;53553;53554 53553 3 0 0 6831600 VHGPGIQSGTTNKPNK FQVPVTEGCDPSRVRVHGPGIQSGTTNKPN HGPGIQSGTTNKPNKFTVETRGAGTGGLGL R V H N K F 0 0 2 0 0 1 0 3 1 1 0 2 0 0 2 1 2 0 0 1 0 0 16 1 1633.8536 P21333 P21333 1360 1375 FLNA Filamin-A yes yes 4 0.065333 30.584 By MS/MS By matching 1.5 0.5 1 1 1 1 3939400 0 3839700 99679 14403 623 15123 63397;63398 53555 53555 1 0 1876800 22526 VHIDIGADGR ENDIANFFSPLNPIRVHIDIGADGRATGEA LNPIRVHIDIGADGRATGEADVEFVTHEDA R V H G R A 1 1 0 2 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 1 0 0 10 0 1051.5411 P31942 P31942 223 232 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2 6.7639E-07 156.01 By matching By MS/MS By MS/MS 5.36 1.77 1 1 2 4 3 3 3 5 423570000 21219000 118170000 284180000 14404 721 15124 63399;63400;63401;63402;63403;63404;63405;63406;63407;63408;63409 53556;53557;53558;53559;53560;53561;53562;53563 53561 8 27275000 42303000 42428000 VHIEIGPDGR ENDIYNFFSPLNPVRVHIEIGPDGRVTGEA LNPVRVHIEIGPDGRVTGEADVEFATHEDA R V H G R V 0 1 0 1 0 0 1 2 1 2 0 0 0 0 1 0 0 0 0 1 0 0 10 0 1091.5724 P31943;P55795;P52597 P31943 317 326 HNRNPH1;HNRNPH2;HNRNPF Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed no no 2 3.2545E-28 154.49 By MS/MS By MS/MS 4.1 1.58 1 1 1 2 3 2 7 3 187330000 0 71775000 115550000 14405 722;910;944 15125 63410;63411;63412;63413;63414;63415;63416;63417;63418;63419 53564;53565;53566;53567;53568;53569;53570;53571 53567 8 0 24775000 18556000 VHIGQVIMSIR GMRGAFGKPQGTVARVHIGQVIMSIRTKLQ TVARVHIGQVIMSIRTKLQNKEHVIEALRR R V H I R T 0 1 0 0 0 1 0 1 1 3 0 0 1 0 0 1 0 0 0 2 0 0 11 0 1251.7122 P27635;Q96L21 P27635 129 139 RPL10;RPL10L 60S ribosomal protein L10;60S ribosomal protein L10-like yes no 2;3 8.8842E-23 169.09 By MS/MS By MS/MS By MS/MS 6.58 0.64 1 3 8 1 6 5 450310000 4105300 142490000 303710000 14406 678 15126;15127 63420;63421;63422;63423;63424;63425;63426;63427;63428;63429;63430;63431 53572;53573;53574;53575;53576;53577;53578;53579;53580;53581;53582 53576 310 11 8847800 80968000 53630000 VHILDTESFETTFGPK PMSLLHDRIRPHNLKVHILDTESFETTFGP HILDTESFETTFGPKSQRKRPNLFASDMQS K V H P K S 0 0 0 1 0 0 2 1 1 1 1 1 0 2 1 1 3 0 0 1 0 0 16 0 1819.8992 Q13823 Q13823 132 147 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 6.1016E-06 130.24 By MS/MS By MS/MS 2 0 2 1 1 11848000 0 4516300 7332100 14407 1269 15128 63432;63433 53583;53584 53583 2 0 2033800 1656900 VHILYVGSMPLK IVTCKVSSINSRFAKVHILYVGSMPLKNSF FAKVHILYVGSMPLKNSFRGTIRKEDVRAT K V H L K N 0 0 0 0 0 0 0 1 1 1 2 1 1 0 1 1 0 0 1 2 0 0 12 0 1355.7635 Q9Y3B2 Q9Y3B2 85 96 EXOSC1 Exosome complex component CSL4 yes yes 3 0.019458 62.408 By matching By MS/MS 7 0 2 1 1 7700000 0 1441300 6258600 14408 2264 15129 63434;63435 53585 53585 1 0 827620 1110600 VHLDLWVK EHYKKLAEEQQKQYKVHLDLWVKSLSPQDR EQQKQYKVHLDLWVKSLSPQDRAAYKEYIS K V H V K S 0 0 0 1 0 0 0 0 1 0 2 1 0 0 0 0 0 1 0 2 0 0 8 0 1008.5757 P17480 P17480 628 635 UBTF Nucleolar transcription factor 1 yes yes 2 0.013648 89.296 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 21376000 0 5163600 16212000 14409 584 15130 63436;63437 53586;53587 53586 2 0 2325300 3144400 VHLENMGSHDIVDGNHR LENVDKALQFLKEQRVHLENMGSHDIVDGN LENMGSHDIVDGNHRLTLGLIWTIILRFQI R V H H R L 0 1 2 2 0 0 1 2 3 1 1 0 1 0 0 1 0 0 0 2 0 0 17 0 1928.8911 Q01082;P11277;O15020 Q01082 128 144 SPTBN1;SPTB;SPTBN2 Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2 no no 3;4 2.4932E-06 109.79 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 87310000 0 21674000 65636000 14410 1128;160 15131;15132 63438;63439;63440;63441;63442 53588;53589;53590;53591 53590 74 4 0 10594000 14196000 VHLSTGELGIIDSAFGQSGK LFKKETNIQLFVGLKVHLSTGELGIIDSAF GELGIIDSAFGQSGKFKIHIPGGLSPESKK K V H G K F 1 0 0 1 0 1 1 4 1 2 2 1 0 1 0 3 1 0 0 1 0 0 20 0 2015.0324 P57772 P57772 508 527 EEFSEC Selenocysteine-specific elongation factor yes yes 3 0.0025961 55.707 By MS/MS 3 0 1 1 3159400 0 3159400 0 14411 957 15133 63443 53592 53592 1 0 1346800 0 VHLVGIDIFTGK VEMSTSKTGKHGHAKVHLVGIDIFTGKKYE HAKVHLVGIDIFTGKKYEDICPSTHNMDVP K V H G K K 0 0 0 1 0 0 0 2 1 2 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1297.7394 P63241;Q6IS14;Q9GZV4 P63241 56 67 EIF5A;EIF5AL1;EIF5A2 Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like;Eukaryotic translation initiation factor 5A-2 yes no 2;3 8.6544E-06 158.79 By MS/MS By MS/MS By MS/MS 8 0.667 2 5 2 2 2 5 118270000 11246000 8716800 98309000 14412 1067 15134 63444;63445;63446;63447;63448;63449;63450;63451;63452 53593;53594;53595;53596;53597;53598;53599;53600 53593 8 9654700 4019700 16314000 VHMFEAHSDYIR DDMQIRVFNYNTLERVHMFEAHSDYIRCIA LERVHMFEAHSDYIRCIAVHPTQPFILTSS R V H I R C 1 1 0 1 0 0 1 0 2 1 0 0 1 1 0 1 0 0 1 1 0 0 12 0 1503.6929 P35606 P35606 92 103 COPB2 Coatomer subunit beta yes yes 3 0.063834 39.73 By MS/MS 2 0 1 1 1736700 0 1736700 0 14413 754 15135 63453 53601 53601 1 0 782060 0 VHMWEQTVK QLDFEKNQLKEDQDKVHMWEQTVKKDENEI KEDQDKVHMWEQTVKKDENEIEKLKKEEQR K V H V K K 0 0 0 0 0 1 1 0 1 0 0 1 1 0 0 0 1 1 0 2 0 0 9 0 1156.5699 Q14683 Q14683 835 843 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0034612 99.802 By MS/MS 1.5 0.5 1 1 2 15437000 0 0 15437000 14414 1312 15136 63454;63455 53602 53602 1 0 0 3407000 VHNLITDFLALMPMK VVSEYFYQEEFYIRRVHNLITDFLALMPMK VHNLITDFLALMPMKVKQLRNRADEDARMI R V H M K V 1 0 1 1 0 0 0 0 1 1 3 1 2 1 1 0 1 0 0 1 0 0 15 0 1741.9259 Q92621 Q92621 392 406 NUP205 Nuclear pore complex protein Nup205 yes yes 3 0.0020494 75.462 By MS/MS 1.5 0.5 1 1 2 9286800 0 0 9286800 14415 1714 15137 63456;63457 53603;53604 53603 2 0 0 2014700 VHPETYEWAR GDSTDSYIEVLDGSRVHPETYEWARKMAVD LDGSRVHPETYEWARKMAVDALEYDESAED R V H A R K 1 1 0 0 0 0 2 0 1 0 0 0 0 0 1 0 1 1 1 1 0 0 10 0 1286.6044 Q7KZ85 Q7KZ85 1058 1067 SUPT6H Transcription elongation factor SPT6 yes yes 2 0.0083596 90.657 By MS/MS 1 0 1 1 7612400 0 0 7612400 14416 1517 15138 63458 53605 53605 1 0 0 1640200 VHSEVASLQEK SSQVCFTQNNYIQVRVHSEVASLQEKQHTT IQVRVHSEVASLQEKQHTTTNVFHFTFMSE R V H E K Q 1 0 0 0 0 1 2 0 1 0 1 1 0 0 0 2 0 0 0 2 0 0 11 0 1225.6303 Q9Y305 Q9Y305 373 383 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2;3 1.7725E-59 234.71 By MS/MS By MS/MS 4.57 0.495 3 4 3 4 62365000 0 23087000 39278000 14417 2256 15139 63459;63460;63461;63462;63463;63464;63465 53606;53607;53608;53609;53610;53611 53607 6 0 6000400 5593200 VHSFPTLK IAKMDSTANEVEAVKVHSFPTLKFFPASAD NEVEAVKVHSFPTLKFFPASADRTVIDYNG K V H L K F 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 0 0 1 0 0 8 0 927.5178 P07237 P07237 437 444 P4HB Protein disulfide-isomerase yes yes 2 0.025403 80.098 By MS/MS 4 0 1 1 3709400 0 3709400 0 14418 456 15140 63466 53612 53612 1 0 1231000 0 VHTECCHGDLLECADDR AEFAEVSKLVTDLTKVHTECCHGDLLECAD TECCHGDLLECADDRADLAKYICENQDSIS K V H D R A 1 1 0 3 3 0 2 1 2 0 2 0 0 0 0 0 1 0 0 1 0 0 17 0 2085.8303 CON__P02768-1;P02768 CON__P02768-1 265 281 ALB Serum albumin yes no 3 2.5708E-14 180.81 By MS/MS 6 2.16 1 1 1 3 44968000 44968000 0 0 + 14419 44 15141 63467;63468;63469 53613;53614 53614 2 27169000 0 0 VHTECCHGDLLECADDRADLAK AEFAEVSKLVTDLTKVHTECCHGDLLECAD GDLLECADDRADLAKYICENQDSISSKLKE K V H A K Y 3 1 0 4 3 0 2 1 2 0 3 1 0 0 0 0 1 0 0 1 0 0 22 1 2584.1105 CON__P02768-1;P02768 CON__P02768-1 265 286 ALB Serum albumin yes no 3;4;5 1.8077E-93 243.23 By MS/MS 7.2 2.23 1 1 3 5 141860000 141860000 0 0 + 14420 44 15142 63470;63471;63472;63473;63474 53615;53616;53617;53618 53617 4 83425000 0 0 VHTVMTLEQQDMVCYTAQTLVR GSVGITDPCESGNFRVHTVMTLEQQDMVCY EQQDMVCYTAQTLVRILSHGGFRKILGQEG R V H V R I 1 1 0 1 1 3 1 0 1 0 2 0 2 0 0 0 4 0 1 4 0 0 22 0 2622.2604 Q12905 Q12905 298 319 ILF2 Interleukin enhancer-binding factor 2 yes yes 3 3.963E-11 103.31 By MS/MS 5 0 1 1 3992200 0 0 3992200 14421 1210 15143 63475 53619 53619 1 0 0 556840 VHTVVDRPQQPMTHR PARSSTPLHSPSPIRVHTVVDRPQQPMTHR VHTVVDRPQQPMTHRETAPVSQPENKPESK R V H H R E 0 2 0 1 0 2 0 0 2 0 0 0 1 0 2 0 2 0 0 3 0 0 15 1 1799.9213 O95817 O95817 295 309 BAG3 BAG family molecular chaperone regulator 3 yes yes 4 0.033335 45.33 By MS/MS 3.5 0.5 1 1 2 3840000 0 3840000 0 14422 343 15144 63476;63477 53620 53620 1 0 1607100 0 VHVIFNYK NIMFGPDICGPGTKKVHVIFNYKGKNVLIN CGPGTKKVHVIFNYKGKNVLINKDIRCKDD K V H Y K G 0 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 2 0 0 8 0 1018.56 P27797 P27797 144 151 CALR Calreticulin yes yes 2 0.00098128 122.15 By MS/MS 4 0 1 1 12043000 0 0 12043000 14423 682 15145 63478 53621 53621 1 0 0 1967100 VIAGLYQR RILELSGSSSEDSEKVIAGLYQRAFQHLSE SSEDSEKVIAGLYQRAFQHLSEAVQAAEEE K V I Q R A 1 1 0 0 0 1 0 1 0 1 1 0 0 0 0 0 0 0 1 1 0 0 8 0 918.5287 P78527 P78527 3373 3380 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0039561 103.29 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 12433000 0 10281000 2152000 14424 1089 15146 63479;63480;63481 53622;53623 53622 2 0 5025000 486310 VIAINVDDPDAANYNDINDVKR LGILAMIDEGETDWKVIAINVDDPDAANYN DPDAANYNDINDVKRLKPGYLEATVDWFRR K V I K R L 3 1 4 5 0 0 0 0 0 3 0 1 0 0 1 0 0 0 1 3 0 0 22 1 2443.1979 Q15181 Q15181 156 177 PPA1 Inorganic pyrophosphatase yes yes 3 9.7007E-12 108.71 By MS/MS 6 0 1 1 6463900 0 0 6463900 14425 1350 15147 63482 53624 53624 1 0 0 967060 VIAPSSSLPTSLTIHHPR MPDLRDGSNVIVTERVIAPSSSLPTSLTIH PSSSLPTSLTIHHPRESSNVVVTERVIQPT R V I P R E 1 1 0 0 0 0 0 0 2 2 2 0 0 0 3 4 2 0 0 1 0 0 18 0 1912.053 Q02413 Q02413 898 915 DSG1 Desmoglein-1 yes yes 3 3.026E-09 134.44 By MS/MS By MS/MS 7.67 1.97 1 2 2 1 4 2 23596000 15660000 0 7936600 14426 1146 15148 63483;63484;63485;63486;63487;63488 53625;53626;53627 53625 2 19440000 0 1963900 VIAQQVQLQQQQEQVR QVRSLEAHMYPEKLKVIAQQVQLQQQQEQV IAQQVQLQQQQEQVRLLHQEKLEREQQQLR K V I V R L 1 1 0 0 0 8 1 0 0 1 1 0 0 0 0 0 0 0 0 3 0 0 16 0 1922.0334 Q01664 Q01664 190 205 TFAP4 Transcription factor AP-4 yes yes 2;3 1.4859E-173 297.2 By MS/MS By MS/MS 5.25 0.433 3 1 3 1 22099000 0 11960000 10139000 14427 1137 15149 63489;63490;63491;63492 53628;53629;53630 53628 3 0 3192000 1414200 VIDDTNITR AMRQSVENDIHGLRKVIDDTNITRLQLETE IHGLRKVIDDTNITRLQLETEIEALKEELL K V I T R L 0 1 1 2 0 0 0 0 0 2 0 0 0 0 0 0 2 0 0 1 0 0 9 0 1045.5404 P05783 P05783 188 196 KRT18 Keratin, type I cytoskeletal 18 yes yes 2 4.3382E-42 214.32 By matching By MS/MS By MS/MS 4 2.49 1 2 1 2 2 1 4 3 2 1945800000 746530000 359160000 840100000 14428 436 15150 63493;63494;63495;63496;63497;63498;63499;63500;63501 53631;53632;53633;53634 53633 4 809100000 96925000 178600000 VIDFDENTALDDAEEESFR DTVTWDEYNIQMYDRVIDFDENTALDDAEE DENTALDDAEEESFRKLHLKDKKRFEKANQ R V I F R K 2 1 1 4 0 0 4 0 0 1 1 0 0 2 0 1 1 0 0 1 0 0 19 0 2213.9601 Q14257 Q14257 130 148 RCN2 Reticulocalbin-2 yes yes 2 5.9998E-08 113.54 By MS/MS 5 0 1 1 7765200 0 0 7765200 14429 1296 15151 63502 53635 53635 0 0 0 1083100 VIDFDENTALDDAEEESFRK DTVTWDEYNIQMYDRVIDFDENTALDDAEE ENTALDDAEEESFRKLHLKDKKRFEKANQD R V I R K L 2 1 1 4 0 0 4 0 0 1 1 1 0 2 0 1 1 0 0 1 0 0 20 1 2342.055 Q14257 Q14257 130 149 RCN2 Reticulocalbin-2 yes yes 3 3.315E-06 92.474 By MS/MS 5 0 1 1 25460000 0 0 25460000 14430 1296 15152 63503 53636 53636 1 0 0 3551200 VIDLPGGGAAFVMEHLK ALRSTGLVRVPRPMKVIDLPGGGAAFVMEH DLPGGGAAFVMEHLKMKSLSSQASKLGEQM K V I L K M 2 0 0 1 0 0 1 3 1 1 2 1 1 1 1 0 0 0 0 2 0 0 17 0 1752.9233 Q9H479 Q9H479 76 92 FN3K Fructosamine-3-kinase yes yes 3 0.0057706 56.851 By MS/MS 6 0 1 1 4185000 0 0 4185000 14431 1982 15153 63504 53637 53637 1 0 0 626120 VIDPATATSVDLR YSSLLSPMSVNAVMKVIDPATATSVDLRDI MKVIDPATATSVDLRDIKIVKKLGGTIDDC K V I L R D 2 1 0 2 0 0 0 0 0 1 1 0 0 0 1 1 2 0 0 2 0 0 13 0 1356.7249 P50991 P50991 194 206 CCT4 T-complex protein 1 subunit delta yes yes 2 0.00039487 125.22 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 50298000 0 18282000 32015000 14432 886 15154 63505;63506;63507 53638;53639 53638 2 0 6067200 5442300 VIDRELYQQLQR GLRSLVPAAELLESRVIDRELYQQLQRGER ESRVIDRELYQQLQRGERSVRDVAEVDTVR R V I Q R G 0 2 0 1 0 3 1 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 12 1 1559.842 Q15149 Q15149 3128 3139 PLEC Plectin yes yes 2;3 6.2984E-72 244.01 By MS/MS 1.75 0.829 2 1 1 4 27541000 0 27541000 0 14433 1348 15155 63508;63509;63510;63511 53640;53641 53641 2 0 13261000 0 VIDSSDVVVQVLDAR YKKGQSKRIWGELYKVIDSSDVVVQVLDAR VIDSSDVVVQVLDARDPMGTRSPHIETYLK K V I A R D 1 1 0 3 0 1 0 0 0 1 1 0 0 0 0 2 0 0 0 5 0 0 15 0 1613.8625 Q13823 Q13823 213 227 GNL2 Nucleolar GTP-binding protein 2 yes yes 2;3 0.00028373 147.71 By MS/MS By MS/MS 2 0.632 1 3 1 2 3 19336000 0 4422300 14913000 14434 1269 15156 63512;63513;63514;63515;63516 53642;53643;53644;53645 53644 4 0 1991400 3262400 VIEASDVVLEVLDAR GKQNSKKLYCQELKKVIEASDVVLEVLDAR VIEASDVVLEVLDARDPLGCRCPQVEEAIV K V I A R D 2 1 0 2 0 0 2 0 0 1 2 0 0 0 0 1 0 0 0 4 0 0 15 0 1626.8829 Q9BVP2 Q9BVP2 137 151 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 3 0.0010886 81.619 By MS/MS 3 0 1 1 2300500 0 0 2300500 14435 1917 15157 63517 53646 53646 1 0 0 446190 VIEDGPEPRPNLR VRGCEIQGMLDDKGRVIEDGPEPRPNLRGE GRVIEDGPEPRPNLRGESRTFRVFLDPNQY R V I L R G 0 2 1 1 0 0 2 1 0 1 1 0 0 0 3 0 0 0 0 1 0 0 13 1 1490.7841 O60306 O60306 607 619 AQR Intron-binding protein aquarius yes yes 3 0.011633 68.44 By MS/MS 2 0 1 1 5881400 0 5881400 0 14436 225 15158 63518 53647 53647 1 0 2648500 0 VIEEEWQQVDR DASELSFPFHESILKVIEEEWQQVDRQLPS SILKVIEEEWQQVDRQLPSLACKYPVSSRE K V I D R Q 0 1 0 1 0 2 3 0 0 1 0 0 0 0 0 0 0 1 0 2 0 0 11 0 1429.6838 P42166 P42166 501 511 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin yes yes 2 2.5918E-05 148.96 By MS/MS 3 0 1 1 7953700 0 0 7953700 14437 798 15159 63519 53648 53648 1 0 0 1542600 VIEEQLEPAVEK VIEPQYFGLAYLFRKVIEEQLEPAVEKISI FRKVIEEQLEPAVEKISIMAERLANQFAIY K V I E K I 1 0 0 0 0 1 4 0 0 1 1 1 0 0 1 0 0 0 0 2 0 0 12 0 1382.7293 P42704 P42704 1225 1236 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2 0.0050049 103.18 By MS/MS By matching 3.5 1.12 1 1 1 1 3 1 66006000 0 12918000 53089000 14438 808 15160 63520;63521;63522;63523 53649 53649 1 0 5046100 7404900 VIEETEER AGALGLPDLVAVLTRVIEETEERLSKVSFR LVAVLTRVIEETEERLSKVSFRGLRRQVSA R V I E R L 0 1 0 0 0 0 4 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 8 0 1003.4822 P58107 P58107 2697 2704 EPPK1 Epiplakin yes no 2 0.0056944 98.997 By MS/MS By MS/MS 2.5 1.12 1 1 1 1 2 2 19985000 0 16463000 3522200 14439 958 15161 63524;63525;63526;63527 53650;53651;53652 53652 3 0 7625900 670300 VIEGINR GALSGWAASDDPIEKVIEGINRGLSNAERE ASDDPIEKVIEGINRGLSNAEREVGKALDG K V I N R G 0 1 1 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 7 0 799.4552 Q6UWP8 Q6UWP8 32 38 SBSN Suprabasin yes yes 2 0.019765 102.98 By MS/MS By matching 6.71 3.45 1 1 1 1 1 2 6 1 33327000 32626000 0 701160 14440 1504 15162 63528;63529;63530;63531;63532;63533;63534 53653;53654;53655 53655 3 42048000 0 1533500 VIEHIMEDLDTNADK KDLQNFLKKENKNEKVIEHIMEDLDTNADK VIEHIMEDLDTNADKQLSFEEFIMLMARLT K V I D K Q 1 0 1 3 0 0 2 0 1 2 1 1 1 0 0 0 1 0 0 1 0 0 15 0 1741.8193 P06702 P06702 58 72 S100A9 Protein S100-A9 yes yes 2 4.6065E-73 242.48 By MS/MS By MS/MS 4 3.32 2 1 1 3 1 18109000 13119000 0 4990100 14441 445 15163 63535;63536;63537;63538 53656;53657;53658 53657 2 8879800 0 1075200 VIEPQYFGLAYLFR AAIENIENMLTSENKVIEPQYFGLAYLFRK KVIEPQYFGLAYLFRKVIEEQLEPAVEKIS K V I F R K 1 1 0 0 0 1 1 1 0 1 2 0 0 2 1 0 0 0 2 1 0 0 14 0 1714.9083 P42704 P42704 1210 1223 LRPPRC Leucine-rich PPR motif-containing protein, mitochondrial yes yes 2;3 1.4821E-34 214.93 By MS/MS By MS/MS 2.14 0.99 2 3 1 1 4 3 28063000 0 2558000 25505000 14442 808 15164 63539;63540;63541;63542;63543;63544;63545 53659;53660;53661;53662 53662 4 0 1153500 5649700 VIESTQDLGNDLAGVMALQR LECNETKSWIREKTKVIESTQDLGNDLAGV QDLGNDLAGVMALQRKLTGMERDLVAIEAK K V I Q R K 2 1 1 2 0 2 1 2 0 1 3 0 1 0 0 1 1 0 0 2 0 0 20 0 2129.0787 Q01082 Q01082 977 996 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2;3 1.5676E-120 264.28 By MS/MS By MS/MS 1.29 0.452 5 2 3 4 73618000 0 21649000 51969000 14443 1128 15165;15166 63546;63547;63548;63549;63550;63551;63552 53663;53664;53665;53666;53667 53667 545 5 0 10582000 11265000 VIESTQGLGNDLAGVLALQR LECTETQAWMREKTKVIESTQGLGNDLAGV QGLGNDLAGVLALQRKLAGTERDLEAIAAR K V I Q R K 2 1 1 1 0 2 1 3 0 1 4 0 0 0 0 1 1 0 0 2 0 0 20 0 2053.1168 O15020 O15020 980 999 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 1.0652E-27 186.49 By MS/MS 1 0 1 1 1791700 0 1791700 0 14444 160 15167 63553 53668 53668 1 0 875770 0 VIFLENYR GDVVNHDPAVGDRLRVIFLENYRVSLAEKV AVGDRLRVIFLENYRVSLAEKVIPAADLSE R V I Y R V 0 1 1 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 1 1 0 0 8 0 1052.5655 P11217;P11216;P06737 P11217 643 650 PYGM;PYGB;PYGL Glycogen phosphorylase, muscle form;Glycogen phosphorylase, brain form;Glycogen phosphorylase, liver form yes no 2 0.0036154 104.45 By matching By MS/MS By matching 2.25 1.09 1 2 1 2 1 1 6944900 2327200 2512300 2105300 14445 520 15168 63554;63555;63556;63557 53669 53669 1 2634500 1131300 343870 VIFPTGDSK EREFERMREDREVLRVIFPTGDSKVVLPCN DREVLRVIFPTGDSKVVLPCNLLRMIWNAQ R V I S K V 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 1 1 0 0 1 0 0 9 0 962.5073 P24928 P24928 968 976 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.072128 66.692 By MS/MS 1 0 1 1 3719300 0 3719300 0 14446 653 15169 63558 53670 53670 1 0 1817900 0 VIFTSPIK CAEYAIALALREKQRVIFTSPIKALSNQKY ALREKQRVIFTSPIKALSNQKYREMYEEFQ R V I I K A 0 0 0 0 0 0 0 0 0 2 0 1 0 1 1 1 1 0 0 1 0 0 8 0 903.54295 P42285 P42285 185 192 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.070103 67.981 By MS/MS 2 0 1 1 9154500 0 0 9154500 14447 800 15170 63559 53671 53671 1 0 0 2068700 VIGENLVIVK V I V K 0 0 1 0 0 0 1 1 0 2 1 1 0 0 0 0 0 0 0 3 0 0 10 0 1082.6699 REV__O75976 yes yes 2 0.00060047 133.58 By MS/MS By MS/MS 9.43 0.728 1 2 4 3 4 436350000 0 18196000 418150000 + 14448 2324 15171 63560;63561;63562;63563;63564;63565;63566 53672;53673;53674;53675 53675 4 0 89426000 367260000 VIGGDDLSTLTGK RLKSYCNDQSTGDIKVIGGDDLSTLTGKNV IKVIGGDDLSTLTGKNVLIVEDIIDTGKTM K V I G K N 0 0 0 2 0 0 0 3 0 1 2 1 0 0 0 1 2 0 0 1 0 0 13 0 1274.6718 P00492 P00492 116 128 HPRT1 Hypoxanthine-guanine phosphoribosyltransferase yes yes 2 0.016905 80.979 By MS/MS 7 0 1 1 4933700 0 4933700 0 14449 361 15172 63567 53676 53676 1 0 2833000 0 VIGLSSDLQQVGGASAR IGVDLIMKTCFSPNRVIGLSSDLQQVGGAS GLSSDLQQVGGASARIQDALSTVLQYAEDV R V I A R I 2 1 0 1 0 2 0 3 0 1 2 0 0 0 0 3 0 0 0 2 0 0 17 0 1656.8795 O00303 O00303 262 278 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 2.3354E-13 177.83 By MS/MS 5 0 1 1 19259000 0 19259000 0 14450 118 15173 63568 53677 53677 1 0 4964200 0 VIGMHYFSPVDK LPISEIAAVSKRPEKVIGMHYFSPVDKMQL PEKVIGMHYFSPVDKMQLLEIITTEKTSKD K V I D K M 0 0 0 1 0 0 0 1 1 1 0 1 1 1 1 1 0 0 1 2 0 0 12 0 1391.6908 P40939 P40939 494 505 HADHA Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase yes yes 2;3 0.0046914 103.88 By matching By MS/MS By MS/MS 3 0 4 1 1 2 46755000 2943900 5939300 37872000 14451 789 15174 63569;63570;63571;63572 53678;53679;53680 53680 3 3396600 2531900 7345400 VIGNQSLVNELAFTAR VGLAADVGTLQRLPKVIGNQSLVNELAFTA IGNQSLVNELAFTARKMMADEALGSGLVSR K V I A R K 2 1 2 0 0 1 1 1 0 1 2 0 0 1 0 1 1 0 0 2 0 0 16 0 1730.9315 Q13011 Q13011 215 230 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial yes yes 2 1.1802E-12 179.67 By MS/MS By MS/MS 6 0 2 1 1 16663000 0 9885300 6777800 14452 1215 15175 63573;63574 53681;53682 53681 2 0 3421900 1014000 VIGQDSSEIHFK EDLGDKKEGEYIKLKVIGQDSSEIHFKVKM KLKVIGQDSSEIHFKVKMTTHLKKLKESYC K V I F K V 0 0 0 1 0 1 1 1 1 2 0 1 0 1 0 2 0 0 0 1 0 0 12 0 1358.683 P63165;G2XKQ0 P63165 26 37 SUMO1 Small ubiquitin-related modifier 1;Small ubiquitin-related modifier yes no 3 0.052053 44.616 By MS/MS By matching 4 0.816 1 1 1 1 2 9345000 0 2876600 6468300 14453 1061 15176 63575;63576;63577 53683 53683 1 0 1226300 946020 VIGTLLGTVDK SIVDSYERRNEGAARVIGTLLGTVDKHSVE GAARVIGTLLGTVDKHSVEVTNCFSVPHNE R V I D K H 0 0 0 1 0 0 0 2 0 1 2 1 0 0 0 0 2 0 0 2 0 0 11 0 1114.6598 O00303 O00303 116 126 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.00094014 114.97 By MS/MS 4.5 0.5 1 1 2 12058000 0 0 12058000 14454 118 15177 63578;63579 53684 53684 1 0 0 1728700 VIHDNFGIVEGLMTTVHAITATQK SNASCTTNCLAPLAKVIHDNFGIVEGLMTT EGLMTTVHAITATQKTVDGPSGKLWRDGRG K V I Q K T 2 0 1 1 0 1 1 2 2 3 1 1 1 1 0 0 4 0 0 3 0 0 24 0 2594.3527 P04406 P04406 163 186 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 3;4 2.3297E-11 99.387 By MS/MS By MS/MS By MS/MS 5.71 2.05 1 4 1 1 1 3 3 38792000 1067300 27801000 9923900 14455 415 15178;15179 63580;63581;63582;63583;63584;63585;63586 53685;53686;53687;53688;53689 53686 147 5 916340 9623700 1764200 VIHLSLAPK IKHGSQKDVRDIFERVIHLSLAPKRMKFFF RDIFERVIHLSLAPKRMKFFFKRYLDYEKQ R V I P K R 1 0 0 0 0 0 0 0 1 1 2 1 0 0 1 1 0 0 0 1 0 0 9 0 976.60695 Q14690 Q14690 1821 1829 PDCD11 Protein RRP5 homolog yes yes 2 0.0039464 98.933 By MS/MS 1 0 1 1 17079000 0 0 17079000 14456 1314 15180 63587 53690 53690 1 0 0 3679800 VIHLSNLPHSGYSDSAVLK GKPDQKFDQKQELGRVIHLSNLPHSGYSDS SNLPHSGYSDSAVLKLAEPYGKIKNYILMR R V I L K L 1 0 1 1 0 0 0 1 2 1 3 1 0 0 1 4 0 0 1 2 0 0 19 0 2036.0691 P43243 P43243 497 515 MATR3 Matrin-3 yes yes 2;3;4 6.4052E-17 179.55 By MS/MS By MS/MS 3.48 2.2 5 4 5 3 1 2 2 1 11 12 1169100000 0 312210000 856890000 14457 812 15181 63588;63589;63590;63591;63592;63593;63594;63595;63596;63597;63598;63599;63600;63601;63602;63603;63604;63605;63606;63607;63608;63609;63610 53691;53692;53693;53694;53695;53696;53697;53698;53699;53700;53701;53702;53703;53704;53705;53706;53707 53703 17 0 132820000 186920000 VIHVVTSEMDNYEPGVYTEK GLDRTAGAIRGRAARVIHVVTSEMDNYEPG TSEMDNYEPGVYTEKVLEATKLLSNTVMPR R V I E K V 0 0 1 1 0 0 3 1 1 1 0 1 1 0 1 1 2 0 2 4 0 0 20 0 2309.0886 P35221 P35221 552 571 CTNNA1 Catenin alpha-1 yes yes 3 2.4205E-06 94.845 By MS/MS 2 0 1 1 11155000 0 0 11155000 14458 739 15182 63611 53708 53708 1 0 0 2520700 VIIIGSGVSGLAAAR IYKRIKPLPTKKTGKVIIIGSGVSGLAAAR VIIIGSGVSGLAAARQLQSFGMDVTLLEAR K V I A R Q 3 1 0 0 0 0 0 3 0 3 1 0 0 0 0 2 0 0 0 2 0 0 15 0 1382.8245 O60341 O60341 281 295 KDM1A Lysine-specific histone demethylase 1A yes yes 2 0.0019679 91.313 By MS/MS 2 0 1 1 7749500 0 0 7749500 14459 226 15183 63612 53709 53709 1 0 0 1751200 VIILGDSGVGK ______________________________ VLLKVIILGDSGVGKTSLMNQYVNKKFSNQ K V I G K T 0 0 0 1 0 0 0 3 0 2 1 1 0 0 0 1 0 0 0 2 0 0 11 0 1056.6179 P51149 P51149 11 21 RAB7A Ras-related protein Rab-7a yes yes 2 0.0027077 107.15 By MS/MS By MS/MS 7 0 2 1 1 26673000 0 8074200 18599000 14460 890 15184 63613;63614 53710;53711 53710 2 0 4636300 3300200 VIISAPSADAPMFVMGVNHEK TMEKAGAHLQGGAKRVIISAPSADAPMFVM SADAPMFVMGVNHEKYDNSLKIISNASCTT R V I E K Y 3 0 1 1 0 0 1 1 1 2 0 1 2 1 2 2 0 0 0 3 0 0 21 0 2212.102 P04406 P04406 119 139 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2;3 4.7532E-15 161.04 By MS/MS By MS/MS By MS/MS 5.35 2.93 3 2 2 4 3 1 2 7 4 6 392990000 57756000 41386000 293850000 14461 415 15185;15186 63615;63616;63617;63618;63619;63620;63621;63622;63623;63624;63625;63626;63627;63628;63629;63630;63631 53712;53713;53714;53715;53716;53717;53718;53719;53720;53721 53720 148 10 77676000 16356000 47295000 VIISAPSADAPMFVMGVNHEKYDNSLK TMEKAGAHLQGGAKRVIISAPSADAPMFVM FVMGVNHEKYDNSLKIISNASCTTNCLAPL R V I L K I 3 0 2 2 0 0 1 1 1 2 1 2 2 1 2 3 0 0 1 3 0 0 27 1 2932.4463 P04406 P04406 119 145 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 4 4.2137E-08 72.881 By MS/MS 6 0 1 1 4430000 0 4430000 0 14462 415 15187 63632 53722 53722 1 0 1533500 0 VIIYQEK GEVTEECGKFGAVNRVIIYQEKQGEEEDAE GKFGAVNRVIIYQEKQGEEEDAEIIVKIFV R V I E K Q 0 0 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 1 1 0 0 7 0 891.50657 Q9UHX1 Q9UHX1 496 502 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 0.042119 81.297 By matching By MS/MS 2.5 0.5 1 1 1 1 14012000 2433800 0 11578000 14463 2158 15188 63633;63634 53723 53723 1 2932500 0 2245600 VIKDFMIQGGDFTR TGEKGFGYKNSKFHRVIKDFMIQGGDFTRG RVIKDFMIQGGDFTRGDGTGGKSIYGERFP R V I T R G 0 1 0 2 0 1 0 2 0 2 0 1 1 2 0 0 1 0 0 1 0 0 14 1 1625.8236 P23284 P23284 96 109 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2;3 0.002442 108.56 By MS/MS By MS/MS 7.2 0.4 4 1 2 3 170350000 0 79885000 90469000 14464 640 15189 63635;63636;63637;63638;63639 53724;53725;53726 53724 3 0 45870000 15980000 VILDYNTAHNK FLAKSRPELLEYYIKVILDYNTAHNKVALS YYIKVILDYNTAHNKVALSECYTVASVAEM K V I N K V 1 0 2 1 0 0 0 0 1 1 1 1 0 0 0 0 1 0 1 1 0 0 11 0 1286.6619 Q14258 Q14258 459 469 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2;3 5.8149E-06 113.71 By MS/MS By MS/MS 3.4 0.49 3 2 4 1 16068000 0 16068000 0 14465 1297 15190 63640;63641;63642;63643;63644 53727;53728;53729;53730;53731 53731 5 0 6661800 0 VILEIDNAR ELRDKILTATIENNRVILEIDNARLAADDF TIENNRVILEIDNARLAADDFRLKYENELA R V I A R L 1 1 1 1 0 0 1 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 9 0 1041.5819 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550 P13646 176 184 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.0041163 98.629 By MS/MS By MS/MS 2.5 1.5 1 1 1 1 115220000 115220000 0 0 + 14466 57;548 15191 63645;63646 53732;53733 53732 2 115220000 0 0 VILKNSQGEEVAQR IWKNQNSWGTGEDVKVILKNSQGEEVAQRS KVILKNSQGEEVAQRSTVFKTTIPEEEEEE K V I Q R S 1 1 1 0 0 2 2 1 0 1 1 1 0 0 0 1 0 0 0 2 0 0 14 1 1569.8475 P20700 P20700 529 542 LMNB1 Lamin-B1 yes yes 3 0.029172 53.377 By MS/MS 3 0 1 1 5057100 0 0 5057100 14467 619 15192 63647 53734 53734 1 0 0 980840 VILMLLDNLDPNFQSDQQSK PRQLYLSVKQGELQKVILMLLDNLDPNFQS LDNLDPNFQSDQQSKRTPLHAAAQKGSVEI K V I S K R 0 0 2 3 0 3 0 0 0 1 4 1 1 1 1 2 0 0 0 1 0 0 20 0 2317.1624 Q96KQ7 Q96KQ7 666 685 EHMT2 Histone-lysine N-methyltransferase EHMT2 yes yes 2;3 1.03E-21 180.28 By MS/MS 2 0 2 2 1707500 0 0 1707500 14468 1805 15193 63648;63649 53735;53736 53735 2 0 0 385860 VILTSPLIR SIIIRNTKEPTLTLKVILTSPLIRDELEKK PTLTLKVILTSPLIRDELEKKDGENVSMKD K V I I R D 0 1 0 0 0 0 0 0 0 2 2 0 0 0 1 1 1 0 0 1 0 0 9 0 1010.6488 Q96SI9 Q96SI9 162 170 STRBP Spermatid perinuclear RNA-binding protein yes yes 2 0.037524 75.109 By MS/MS 3 0 1 1 974190 0 974190 0 14469 1834 15194 63650 53737 53737 1 0 415300 0 VIMGEEVEPVGLMTGSGVVGVK VSKTLGVDLVALATRVIMGEEVEPVGLMTG EPVGLMTGSGVVGVKVPQFSFSRLAGADVV R V I V K V 0 0 0 0 0 0 3 5 0 1 1 1 2 0 1 1 1 0 0 6 0 0 22 0 2186.1327 P27708 P27708 1241 1262 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 4.8632E-20 150.59 By MS/MS 1.5 0.5 1 1 2 8675700 0 8675700 0 14470 681 15195 63651;63652 53738 53738 1 0 4198800 0 VINDGLFYYEQDLWAEK GNHTSRAKMSAELAKVINDGLFYYEQDLWA NDGLFYYEQDLWAEKFEPEYSQIKQEVENF K V I E K F 1 0 1 2 0 1 2 1 0 1 2 1 0 1 0 0 0 1 2 1 0 0 17 0 2101.9997 Q6PKG0 Q6PKG0 678 694 LARP1 La-related protein 1 yes yes 2 0.0019066 87.719 By MS/MS 2 0 1 1 4704200 0 0 4704200 14471 1497 15196 63653 53739 53739 1 0 0 1063100 VINEEYK MADKEAAFDDAVEERVINEEYKIWKKNTPF FDDAVEERVINEEYKIWKKNTPFLYDLVMT R V I Y K I 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 7 0 893.44945 Q09028;Q16576 Q09028 16 22 RBBP4;RBBP7 Histone-binding protein RBBP4;Histone-binding protein RBBP7 no no 2 0.015134 111.28 By MS/MS 4 0.816 1 1 1 3 22702000 0 22702000 0 14472 1188;1390 15197 63654;63655;63656 53740 53740 1 0 6032800 0 VINEPTAAALAYGLDK ATKDAGQISGLNVLRVINEPTAAALAYGLD INEPTAAALAYGLDKSEDKVIAVYDLGGGT R V I D K S 4 0 1 1 0 0 1 1 0 1 2 1 0 0 1 0 1 0 1 1 0 0 16 0 1644.8723 P38646 P38646 219 234 HSPA9 Stress-70 protein, mitochondrial yes yes 2 3.4401E-05 141.32 By matching By MS/MS By MS/MS 4.88 3.1 2 2 1 1 2 2 1 5 61415000 3091700 17873000 40451000 14473 774 15198 63657;63658;63659;63660;63661;63662;63663;63664 53741;53742;53743 53741 3 3892000 7619200 9227300 VINLNDNTFTEK ITALAQAFAVNPLLRVINLNDNTFTEKGAV LLRVINLNDNTFTEKGAVAMAETLKTLRQV R V I E K G 0 0 3 1 0 0 1 0 0 1 1 1 0 1 0 0 2 0 0 1 0 0 12 0 1406.7042 P46060 P46060 240 251 RANGAP1 Ran GTPase-activating protein 1 yes yes 2 0.00040353 127.76 By MS/MS By matching 4 0.816 1 1 1 2 1 20198000 0 9986100 10212000 14474 822 15199 63665;63666;63667 53744;53745 53744 2 0 3827500 1424400 VINQILTEMDGMSTK ARGGNIGDGGGAADRVINQILTEMDGMSTK VINQILTEMDGMSTKKNVFIIGATNRPDII R V I T K K 0 0 1 1 0 1 1 1 0 2 1 1 2 0 0 1 2 0 0 1 0 0 15 0 1678.827 P55072 P55072 600 614 VCP Transitional endoplasmic reticulum ATPase yes yes 2 0.0013689 95.401 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 25206000 2206200 4199400 18800000 14475 936 15200 63668;63669;63670;63671 53746;53747 53746 2 2658100 1891100 3859700 VINQYQVVKPTAER IGLNGWLRIDDQTVKVINQYQVVKPTAERT KVINQYQVVKPTAERTAYLLYYRRVDLL__ K V I E R T 1 1 1 0 0 2 1 0 0 1 0 1 0 0 1 0 1 0 1 3 0 0 14 1 1643.8995 Q14694 Q14694 772 785 USP10 Ubiquitin carboxyl-terminal hydrolase 10 yes yes 3 0.024723 55.173 By MS/MS 1.5 0.5 1 1 2 7075500 0 0 7075500 14476 1316 15201 63672;63673 53748 53748 1 0 0 1584600 VIPELNGK NIIPASTGAAKAVGKVIPELNGKLTGMAFR AAKAVGKVIPELNGKLTGMAFRVPTANVSV K V I G K L 0 0 1 0 0 0 1 1 0 1 1 1 0 0 1 0 0 0 0 1 0 0 8 0 868.50182 P04406 P04406 220 227 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 0.0045644 101.21 By MS/MS By matching 5.91 3.03 1 1 1 1 1 1 1 1 1 2 10 1 197320000 194900000 0 2420500 14477 415 15202 63674;63675;63676;63677;63678;63679;63680;63681;63682;63683;63684 53749;53750;53751;53752;53753 53749 5 225390000 0 5293800 VIQAQTAFSANPANPAILSEASAPIPHDGNLYPR ______________________________ EASAPIPHDGNLYPRLYPELSQYMGLSLNE K V I P R L 7 1 3 1 0 2 1 1 1 3 2 0 0 1 5 3 1 0 1 1 0 0 34 0 3529.7954 O00560 O00560 15 48 SDCBP Syntenin-1 yes yes 3;4 1.67E-31 101.88 By MS/MS By MS/MS 6 0 4 2 2 29704000 0 10245000 19459000 14478 128 15203 63685;63686;63687;63688 53754;53755;53756;53757 53754 4 0 3546400 2911300 VIQCFAETGQVQK TLALSVYLRANVPNKVIQCFAETGQVQKIV NKVIQCFAETGQVQKIVLYAKKVGYTPDWI K V I Q K I 1 0 0 0 1 3 1 1 0 1 0 1 0 1 0 0 1 0 0 2 0 0 13 0 1506.7501 Q00610 Q00610 488 500 CLTC Clathrin heavy chain 1 yes yes 2 5.458E-17 186.92 By MS/MS 2 0.816 1 1 1 3 44185000 0 0 44185000 14479 1125 15204 63689;63690;63691 53758;53759 53758 2 0 0 9522300 VIQEGLEGLVLK KRVTKALDLADMITRVIQEGLEGLVLKDVK ITRVIQEGLEGLVLKDVKGTYEPGKRHWLK R V I L K D 0 0 0 0 0 1 2 2 0 1 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1296.7653 P49916 P49916 649 660 LIG3 DNA ligase 3 yes yes 2 6.128E-05 143.96 By MS/MS By MS/MS 2.2 0.748 1 2 2 2 3 58226000 0 14374000 43852000 14480 874 15205 63692;63693;63694;63695;63696 53760;53761;53762;53763 53760 4 0 6426000 9534300 VIQEIVDK VPRNLVGKVIGKNGKVIQEIVDKSGVVRVR VIGKNGKVIQEIVDKSGVVRVRIEGDNENK K V I D K S 0 0 0 1 0 1 1 0 0 2 0 1 0 0 0 0 0 0 0 2 0 0 8 0 942.5386 P51116;P51114 P51114 303 310 FXR2;FXR1 Fragile X mental retardation syndrome-related protein 2;Fragile X mental retardation syndrome-related protein 1 no no 2 0.0027804 107.29 By MS/MS 3 0.816 1 1 1 3 52679000 0 0 52679000 14481 887;888 15206 63697;63698;63699 53764 53764 1 0 0 10154000 VIQIATSSSTAK RALTQFPLPKNLLAKVIQIATSSSTAKNLM LAKVIQIATSSSTAKNLMQFHTVGTKTKLS K V I A K N 2 0 0 0 0 1 0 0 0 2 0 1 0 0 0 3 2 0 0 1 0 0 12 0 1204.6663 Q7L2E3 Q7L2E3 252 263 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.00016518 134.68 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 28667000 0 8811100 19856000 14482 1522 15207 63700;63701;63702 53765;53766 53765 2 0 3967800 4406500 VIQIVINR IRIAGDYVSEEVWYRVIQIVINRDDVQGYA SEEVWYRVIQIVINRDDVQGYAAKTVFEAL R V I N R D 0 1 1 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 2 0 0 8 0 953.6022 O94973 O94973 464 471 AP2A2 AP-2 complex subunit alpha-2 yes yes 2 0.0002213 138.07 By MS/MS 2.5 0.5 1 1 2 9285300 0 0 9285300 14483 306 15208 63703;63704 53767 53767 1 0 0 2035300 VIQVSPFLLALSGNSR LTLLGSYKGKKCAFRVIQVSPFLLALSGNS IQVSPFLLALSGNSRELVLD__________ R V I S R E 1 1 1 0 0 1 0 1 0 1 3 0 0 1 1 3 0 0 0 2 0 0 16 0 1699.9621 O95059 O95059 104 119 RPP14 Ribonuclease P protein subunit p14 yes yes 2 1.179E-08 171.05 By MS/MS By MS/MS 9.5 0.5 1 1 1 1 7865600 0 1208800 6656800 14484 307 15209 63705;63706 53768;53769 53769 2 0 6115500 2126500 VIQYLAHVASSHK CTGESGAGKTENTKKVIQYLAHVASSHKGR KKVIQYLAHVASSHKGRKDHNIPGELERQL K V I H K G 2 0 0 0 0 1 0 0 2 1 1 1 0 0 0 2 0 0 1 2 0 0 13 0 1451.7885 P35580 P35580 191 203 MYH10 Myosin-10 yes yes 2;3 2.6776E-17 191.53 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 145660000 0 45508000 100150000 14485 753 15210 63707;63708;63709;63710 53770;53771;53772 53771 3 0 22243000 21633000 VIQYLAHVASSPK CTGESGAGKTENTKKVIQYLAHVASSPKGR KKVIQYLAHVASSPKGRKEPGVPGELERQL K V I P K G 2 0 0 0 0 1 0 0 1 1 1 1 0 0 1 2 0 0 1 2 0 0 13 0 1411.7823 Q7Z406 Q7Z406 211 223 MYH14 Myosin-14 yes yes 2 0.008244 91.313 By MS/MS 1 0 1 1 5510400 0 5510400 0 14486 1531 15211 63711 53773 53773 1 0 2693400 0 VIQYLAYVASSHK CTGESGAGKTENTKKVIQYLAYVASSHKSK KKVIQYLAYVASSHKSKKDQGELERQLLQA K V I H K S 2 0 0 0 0 1 0 0 1 1 1 1 0 0 0 2 0 0 2 2 0 0 13 0 1477.7929 P35579 P35579 187 199 MYH9 Myosin-9 yes yes 2;3 9.7279E-12 182.64 By matching By MS/MS By MS/MS 2 1 5 3 3 1 1 6 5 290900000 1029700 175800000 114060000 14487 752 15212 63712;63713;63714;63715;63716;63717;63718;63719;63720;63721;63722;63723 53774;53775;53776;53777;53778;53779;53780;53781;53782;53783 53776 10 1029700 85049000 24493000 VISALSEQANQR KEGVSINKSLLTLGKVISALSEQANQRSVF LGKVISALSEQANQRSVFIPYRESVLTWLL K V I Q R S 2 1 1 0 0 2 1 0 0 1 1 0 0 0 0 2 0 0 0 1 0 0 12 0 1314.6892 Q15058 Q15058 636 647 KIF14 Kinesin-like protein KIF14 yes yes 2 0.00018417 133.13 By MS/MS 1 0 1 1 3814700 0 0 3814700 14488 1341 15213 63724 53784 53784 1 0 0 821930 VISELNGK LDSVGIEADDDRLNKVISELNGKNIEDVIA DDDRLNKVISELNGKNIEDVIAQGIGKLAS K V I G K N 0 0 1 0 0 0 1 1 0 1 1 1 0 0 0 1 0 0 0 1 0 0 8 0 858.48108 P05387 P05387 42 49 RPLP2 60S acidic ribosomal protein P2 yes yes 2 8.2102E-06 154.09 By MS/MS By MS/MS By MS/MS 8.83 0.687 2 3 1 2 3 1 136300000 6363100 72411000 57522000 14489 431 15214 63725;63726;63727;63728;63729;63730 53785;53786;53787;53788 53788 4 3702200 64950000 18375000 VISESPPDQWEAR EKLYRPPPVLDALGRVISESPPDQWEARCG GRVISESPPDQWEARCGLALALNKLSQYLD R V I A R C 1 1 0 1 0 1 2 0 0 1 0 0 0 0 2 2 0 1 0 1 0 0 13 0 1512.7209 Q92616 Q92616 1222 1234 GCN1L1 Translational activator GCN1 yes yes 2 0.00031728 129.16 By MS/MS 1 0 1 1 2709100 0 2709100 0 14490 1712 15215 63731 53789 53789 1 0 1324200 0 VISGVLQLGNIVFK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK RVISGVLQLGNIVFKKERNTDQASMPDNTA R V I F K K 0 0 1 0 0 1 0 2 0 2 2 1 0 1 0 1 0 0 0 3 0 0 14 0 1485.8919 P35579 P35579 342 355 MYH9 Myosin-9 yes yes 2;3 2.7433E-11 177.57 By MS/MS By MS/MS 2.3 1.35 4 2 2 1 1 7 3 268090000 0 191680000 76408000 14491 752 15216 63732;63733;63734;63735;63736;63737;63738;63739;63740;63741 53790;53791;53792;53793;53794;53795;53796;53797;53798;53799;53800;53801 53791 12 0 89531000 16370000 VISGVLQLGNIVFKK RIMGIPEEEQMGLLRVISGVLQLGNIVFKK VISGVLQLGNIVFKKERNTDQASMPDNTAA R V I K K E 0 0 1 0 0 1 0 2 0 2 2 2 0 1 0 1 0 0 0 3 0 0 15 1 1613.9869 P35579 P35579 342 356 MYH9 Myosin-9 yes yes 2;3 0.00060759 141.1 By MS/MS By MS/MS 2.43 1.5 3 1 1 1 1 6 1 39978000 0 34341000 5637300 14492 752 15217 63742;63743;63744;63745;63746;63747;63748 53802;53803;53804;53805;53806;53807;53808 53802 7 0 16025000 1214700 VITDIAGVIPAEK QSATRLTGGKEITEKVITDIAGVIPAEKID EKVITDIAGVIPAEKIDGVFAACQSGSFDK K V I E K I 2 0 0 1 0 0 1 1 0 3 0 1 0 0 1 0 1 0 0 2 0 0 13 0 1324.7602 P35249 P35249 261 273 RFC4 Replication factor C subunit 4 yes yes 2 0.00051179 120.77 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 31300000 0 9100800 22199000 14493 744 15218 63749;63750;63751 53809;53810 53809 2 0 3150400 3344700 VITEEEK PVMPVRNVYKKEKARVITEEEKNFKAFASL VYKKEKARVITEEEKNFKAFASLRMARANA R V I E K N 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 7 0 846.43346 P26373 P26373 168 174 RPL13 60S ribosomal protein L13 yes yes 2 0.024818 97.068 By MS/MS 6.29 1.03 2 2 2 1 7 3471600 0 3471600 0 14494 669 15219 63752;63753;63754;63755;63756;63757;63758 53811;53812 53812 2 0 1324800 0 VITEEEKNFK PVMPVRNVYKKEKARVITEEEKNFKAFASL KEKARVITEEEKNFKAFASLRMARANARLF R V I F K A 0 0 1 0 0 0 3 0 0 1 0 2 0 1 0 0 1 0 0 1 0 0 10 1 1235.6398 P26373 P26373 168 177 RPL13 60S ribosomal protein L13 yes yes 2;3 2.1442E-06 160.69 By MS/MS By MS/MS 6.5 0.5 3 3 3 3 65136000 0 40141000 24996000 14495 669 15220 63759;63760;63761;63762;63763;63764 53813;53814;53815;53816 53814 4 0 15078000 4217000 VITEYLNAQESAK GLVMVEVRKEKQFQKVITEYLNAQESAKSA QKVITEYLNAQESAKSARLNLWRYGDFRAD K V I A K S 2 0 1 0 0 1 2 0 0 1 1 1 0 0 0 1 1 0 1 1 0 0 13 0 1464.746 Q7KZF4 Q7KZF4 874 886 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 5.5173E-72 238.73 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 97935000 2779100 36309000 58847000 14496 1518 15221 63765;63766;63767;63768;63769 53817;53818;53819;53820 53818 4 2779100 16453000 13237000 VITFANQDDYISFR ILRYLFPVPKDDSHRVITFANQDDYISFRH RVITFANQDDYISFRHHVYKKTDHRNVELT R V I F R H 1 1 1 2 0 1 0 0 0 2 0 0 0 2 0 1 1 0 1 1 0 0 14 0 1687.8206 Q96G21 Q96G21 217 230 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 yes yes 2 0.00029148 149.96 By matching By MS/MS 6 0.707 1 2 1 1 3 33137000 0 4975100 28161000 14497 1787 15222 63770;63771;63772;63773 53821;53822 53822 2 0 1722200 4269500 VITIMQNPR LTKRAGELTEDEVERVITIMQNPRQYKIPD EDEVERVITIMQNPRQYKIPDWFLNRQKDV R V I P R Q 0 1 1 0 0 1 0 0 0 2 0 0 1 0 1 0 1 0 0 1 0 0 9 0 1070.5906 P62269 P62269 67 75 RPS18 40S ribosomal protein S18 yes yes 2 4.2633E-07 155.51 By MS/MS By MS/MS 7.86 1.46 1 3 1 2 5 2 453540000 0 378610000 74932000 14498 1014 15223;15224 63774;63775;63776;63777;63778;63779;63780 53823;53824;53825;53826;53827;53828 53825 484 6 0 209570000 57792000 VITMFVQR NSIPGIESPFEQAKKVITMFVQRQVFAENK PFEQAKKVITMFVQRQVFAENKDEIALVLF K V I Q R Q 0 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 1 0 0 2 0 0 8 0 992.54772 P13010 P13010 37 44 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 2.1792E-14 184.16 By matching By MS/MS By MS/MS 5.22 3.19 1 4 1 1 2 1 6 2 104310000 6403200 79497000 18406000 14499 542 15225;15226 63781;63782;63783;63784;63785;63786;63787;63788;63789 53829;53830;53831;53832;53833;53834 53830 243 6 7387900 48710000 12693000 VITNFNSAHDTDR GTLNTALRSLGIPSRVITNFNSAHDTDRNL SRVITNFNSAHDTDRNLSVDVYYDPMGNPL R V I D R N 1 1 2 2 0 0 0 0 1 1 0 0 0 1 0 1 2 0 0 1 0 0 13 0 1488.6957 Q08188 Q08188 293 305 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2;3 1.1651E-07 171.62 By MS/MS By MS/MS 5.48 3.01 3 1 3 3 3 1 2 1 3 3 14 9 169430000 118540000 0 50891000 14500 1181 15227 63790;63791;63792;63793;63794;63795;63796;63797;63798;63799;63800;63801;63802;63803;63804;63805;63806;63807;63808;63809;63810;63811;63812 53835;53836;53837;53838;53839;53840;53841;53842;53843;53844;53845;53846;53847;53848 53836 14 121550000 0 25640000 VITNQYNNPAGLYSSENISNFNNALESK AMPFTASPASSTTARVITNQYNNPAGLYSS SSENISNFNNALESKTAASGVEANSRPLDH R V I S K T 2 0 7 0 0 1 2 1 0 2 2 1 0 1 1 4 1 0 2 1 0 0 28 0 3100.4738 O00151 O00151 139 166 PDLIM1 PDZ and LIM domain protein 1 yes yes 3 7.1438E-40 153.82 By MS/MS 6 0.816 1 1 1 3 18321000 0 18321000 0 14501 105 15228 63813;63814;63815 53849 53849 1 0 6427700 0 VITPEDLLFLMR LLQQAAEVSQLRGARVITPEDLLFLMRKDK GARVITPEDLLFLMRKDKKKLRRLLKYMFI R V I M R K 0 1 0 1 0 0 1 0 0 1 3 0 1 1 1 0 1 0 0 1 0 0 12 0 1445.7952 O75486 O75486 77 88 SUPT3H Transcription initiation protein SPT3 homolog yes yes 2 1.119E-06 163.32 By matching By MS/MS 6 0 2 1 1 1224100 0 461820 762280 14502 264 15229 63816;63817 53850;53851 53850 2 0 159870 114050 VIVAVGDR LHPIQTSFQEATASKVIVAVGDRSSNLRGE QEATASKVIVAVGDRSSNLRGECTPTQREV K V I D R S 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 3 0 0 8 0 827.4865 Q8TEM1 Q8TEM1 1577 1584 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.022107 82.671 By MS/MS 1 0 1 1 4878400 0 0 4878400 14503 1666 15230 63818 53852 53852 1 0 0 1051100 VIVDFSSPNIAK LVNGVQLPALGENKKVIVDFSSPNIAKEMH NKKVIVDFSSPNIAKEMHVGHLRSTIIGES K V I A K E 1 0 1 1 0 0 0 0 0 2 0 1 0 1 1 2 0 0 0 2 0 0 12 0 1288.7027 P54136 P54136 194 205 RARS Arginine--tRNA ligase, cytoplasmic yes yes 2 0.049237 62.303 By MS/MS 3 0 1 1 5957600 0 5957600 0 14504 927 15231 63819 53853 53853 0 0 2539700 0 VIVGGSSEYK MVYSEEGAEDRTFARVIVGGSSEYKINNKV RTFARVIVGGSSEYKINNKVVQLHEYSEEL R V I Y K I 0 0 0 0 0 0 1 2 0 1 0 1 0 0 0 2 0 0 1 2 0 0 10 0 1037.5393 Q14683 Q14683 97 106 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.0018853 107.57 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 49460000 0 12828000 36632000 14505 1312 15232 63820;63821;63822;63823 53854;53855;53856;53857 53856 4 0 5957700 8018500 VIVMSATLDAGK MGVLKEVVRQRSDLKVIVMSATLDAGKFQI DLKVIVMSATLDAGKFQIYFDNCPLLTIPG K V I G K F 2 0 0 1 0 0 0 1 0 1 1 1 1 0 0 1 1 0 0 2 0 0 12 0 1203.6533 O43143 O43143 288 299 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 yes yes 2 0.046044 74.162 By MS/MS By matching 2.5 0.5 1 1 1 1 28486000 0 2801800 25684000 14506 186 15233 63824;63825 53858 53858 1 0 1261700 4981500 VKADRDESSPYAAMLAAQDVAQR LSGKETICRVTGGMKVKADRDESSPYAAML SPYAAMLAAQDVAQRCKELGITALHIKLRA K V K Q R C 6 2 0 3 0 2 1 0 0 0 1 1 1 0 1 2 0 0 1 2 0 0 23 2 2491.2125 P62263 P62263 62 84 RPS14 40S ribosomal protein S14 yes yes 3;4 2.449E-20 140.2 By MS/MS 8 0 2 2 48358000 0 0 48358000 14507 1012 15234 63826;63827 53859;53860 53860 2 0 0 7413700 VKAFLADPSAFVAAAPVAAATTAAPAAAAAPAK ALSVETDYTFPLAEKVKAFLADPSAFVAAA AATTAAPAAAAAPAKVEAKEESEESDEDMG K V K A K V 17 0 0 1 0 0 0 0 0 0 1 2 0 2 4 1 2 0 0 3 0 0 33 1 2978.6229 P05388 P05388 265 297 RPLP0 60S acidic ribosomal protein P0 yes yes 3 1.3465E-13 73.317 By MS/MS 6 0 1 1 3411300 0 3411300 0 14508 432 15235 63828 53861 53861 1 0 1180900 0 VKDAQQVEPEGQEKPSPATVR KPGPIGKERSLKNRKVKDAQQVEPEGQEKP VEPEGQEKPSPATVRSTDPVTTKETKAVSE K V K V R S 2 1 0 1 0 3 3 1 0 0 0 2 0 0 3 1 1 0 0 3 0 0 21 2 2292.171 Q9Y520 Q9Y520 2128 2148 PRRC2C Protein PRRC2C yes yes 4 0.023041 38.67 By MS/MS 1 0 1 1 2965100 0 0 2965100 14509 2293 15236 63829 53862 53862 1 0 0 638890 VKDAVEQQGEVK ANPHAEISTKVPASKVKDAVEQQGEVKKNK ASKVKDAVEQQGEVKKNKRERKEERQKKRK K V K V K K 1 0 0 1 0 2 2 1 0 0 0 2 0 0 0 0 0 0 0 3 0 0 12 1 1328.6936 Q9NX58 Q9NX58 174 185 LYAR Cell growth-regulating nucleolar protein yes yes 3 0.022003 63.966 By MS/MS 5 0 1 1 2378600 0 2378600 0 14510 2086 15237 63830 53863 53863 1 0 613130 0 VKDFATVYVEAIK RHFWQQDDPQSSWDRVKDFATVYVEAIKDS DRVKDFATVYVEAIKDSGRDYVAQFEASAL R V K I K D 2 0 0 1 0 0 1 0 0 1 0 2 0 1 0 0 1 0 1 3 0 0 13 1 1481.813 CON__P15497 CON__P15497 34 46 yes yes 2;3 2.7643E-11 184.31 By MS/MS By MS/MS By MS/MS 7.64 1.49 1 1 4 2 1 2 7 2 2 271890000 140410000 5794300 125680000 + 14511 59 15238 63831;63832;63833;63834;63835;63836;63837;63838;63839;63840;63841 53864;53865;53866;53867;53868;53869;53870 53865 7 267150000 9666100 21842000 VKDFATVYVEAIKDSGR RHFWQQDDPQSSWDRVKDFATVYVEAIKDS DFATVYVEAIKDSGRDYVAQFEASALGKQL R V K G R D 2 1 0 2 0 0 1 1 0 1 0 2 0 1 0 1 1 0 1 3 0 0 17 2 1896.9945 CON__P15497 CON__P15497 34 50 yes yes 3;4 0.00019192 96.143 By MS/MS By matching 7.83 1.07 3 2 1 5 1 51739000 47695000 0 4043500 + 14512 59 15239 63842;63843;63844;63845;63846;63847 53871;53872;53873;53874;53875 53874 5 95857000 0 717490 VKDILQNVFK SPAAWNKEDFPWSGKVKDILQNVFKLEKFR PWSGKVKDILQNVFKLEKFRPLQLETINVT K V K F K L 0 0 1 1 0 1 0 0 0 1 1 2 0 1 0 0 0 0 0 2 0 0 10 1 1202.7023 P46063 P46063 79 88 RECQL ATP-dependent DNA helicase Q1 yes yes 2;3 0.0033038 113.18 By MS/MS By MS/MS 2.5 0.764 1 1 4 2 4 85698000 0 16216000 69482000 14513 823 15240 63848;63849;63850;63851;63852;63853 53876;53877;53878;53879 53876 4 0 6912900 13563000 VKDLATVYVDVLK HFWQQDEPPQSPWDRVKDLATVYVDVLKDS DRVKDLATVYVDVLKDSGRDYVSQFEGSAL R V K L K D 1 0 0 2 0 0 0 0 0 0 2 2 0 0 0 0 1 0 1 4 0 0 13 1 1461.8443 P02647 P02647 35 47 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 1.8042E-06 168.61 By MS/MS 9.5 0.5 2 2 4 84254000 84254000 0 0 14514 389 15241 63854;63855;63856;63857 53880;53881 53880 2 51496000 0 0 VKDLESLFHR SAKKREGELTVAQGRVKDLESLFHRSEVEL VAQGRVKDLESLFHRSEVELAAALSDKRGL R V K H R S 0 1 0 1 0 0 1 0 1 0 2 1 0 1 0 1 0 0 0 1 0 0 10 1 1242.6721 Q03252 Q03252 149 158 LMNB2 Lamin-B2 yes yes 2;3 1.2956E-10 172.94 By MS/MS By MS/MS 4 0.816 2 2 2 2 4 65157000 0 8617000 56540000 14515 1156 15242 63858;63859;63860;63861;63862;63863 53882;53883;53884;53885 53883 4 0 3452800 9574700 VKDMAAPGTSSVPAPTAGNAEK DIDEQIESMFNSKKRVKDMAAPGTSSVPAP GTSSVPAPTAGNAEKLEIAKRLALRINAQK R V K E K L 5 0 1 1 0 0 1 2 0 0 0 2 1 0 3 2 2 0 0 2 0 0 22 1 2098.0365 Q7L014 Q7L014 827 848 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 3 0.0041246 48.597 By MS/MS 2 0 1 1 3998600 0 3998600 0 14516 1520 15243 63864 53886 53886 1 0 1800600 0 VKEDENVPFLLVGNK ESFAATADFREQILRVKEDENVPFLLVGNK VKEDENVPFLLVGNKSDLEDKRQVSVEEAK R V K N K S 0 0 2 1 0 0 2 1 0 0 2 2 0 1 1 0 0 0 0 3 0 0 15 1 1699.9145 P11233 P11233 114 128 RALA Ras-related protein Ral-A yes yes 2 0.00099293 152.67 By MS/MS 6.5 0.5 1 1 2 9237200 0 0 9237200 14517 521 15244 63865;63866 53887 53887 1 0 0 1600500 VKEGMNIVEAMER AKTEWLDGKHVVFGKVKEGMNIVEAMERFG GKVKEGMNIVEAMERFGSRNGKTSKKITIA K V K E R F 1 1 1 0 0 0 3 1 0 1 0 1 2 0 0 0 0 0 0 2 0 0 13 1 1504.7378 P62937 P62937 132 144 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2;3 0.0038012 121.02 By matching By MS/MS 8.25 0.433 3 1 1 3 38561000 986020 0 37575000 14518 1053 15245 63867;63868;63869;63870 53888;53889;53890;53891 53890 4 846530 0 6126000 VKELQAEQEDR LAANLDRAKAGLLERVKELQAEQEDRALRS LLERVKELQAEQEDRALRSFKLSVTVDPKY R V K D R A 1 1 0 1 0 2 3 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1343.6681 Q00341 Q00341 1038 1048 HDLBP Vigilin yes yes 3 0.012937 72.29 By MS/MS 2 0 1 1 5555600 0 5555600 0 14519 1122 15246 63871 53892 53892 1 0 2501700 0 VKEPSVQEATSTSDILK EKKEKTPELPEPSVKVKEPSVQEATSTSDI EPSVQEATSTSDILKVPKPEPIPEPKEPSP K V K L K V 1 0 0 1 0 1 2 0 0 1 1 2 0 0 1 3 2 0 0 2 0 0 17 1 1830.9575 Q8IYB3 Q8IYB3 230 246 SRRM1 Serine/arginine repetitive matrix protein 1 yes yes 2;3 4.462E-08 164.81 By MS/MS 1.33 0.471 2 1 3 26968000 0 0 26968000 14520 1591 15247 63872;63873;63874 53893;53894;53895 53894 3 0 0 5890900 VKETQEDKLEGGAAK EMQPTELVSKEREEKVKETQEDKLEGGAAK VKETQEDKLEGGAAKRETKEVQTNELKAEK K V K A K R 2 0 0 1 0 1 3 2 0 0 1 3 0 0 0 0 1 0 0 1 0 0 15 2 1601.8261 O43491 O43491 177 191 EPB41L2 Band 4.1-like protein 2 yes yes 3 0.012071 62.861 By MS/MS By matching 2.5 0.5 1 1 1 1 3596800 0 1555700 2041100 14521 199 15248 63875;63876 53896 53896 1 0 700540 395890 VKGGGHVAQIYAIR LLGKERFAGVDIRVRVKGGGHVAQIYAIRQ RVKGGGHVAQIYAIRQSISKALVAYYQKYV R V K I R Q 2 1 0 0 0 1 0 3 1 2 0 1 0 0 0 0 0 0 1 2 0 0 14 1 1467.831 P62249 P62249 72 85 RPS16 40S ribosomal protein S16 yes yes 3 0.020351 56.938 By MS/MS By matching 8 0 2 1 1 31503000 0 17204000 14299000 14522 1010 15249 63877;63878 53897 53897 1 0 7827400 2192100 VKLEAEIATYR GQRQAQEYEALLNIKVKLEAEIATYRRLLE LNIKVKLEAEIATYRRLLEDGEDFNLGDAL K V K Y R R 2 1 0 0 0 0 2 0 0 1 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1291.7136 CON__P05784;P05783 P05783 371 381 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 1.2867E-06 161.27 By MS/MS By MS/MS 4.2 1.6 1 1 3 4 1 3 7 645110000 0 216620000 428480000 + 14523 436;48 15250 63879;63880;63881;63882;63883;63884;63885;63886;63887;63888 53898;53899;53900;53901;53902;53903;53904;53905;53906;53907;53908;53909;53910;53911 53910 14 0 56805000 64067000 VKLESPTVSTLTPSSPGK EKISPAALKKTLLDRVKLESPTVSTLTPSS ESPTVSTLTPSSPGKLLTRSLALGGKKD__ R V K G K L 0 0 0 0 0 0 1 1 0 0 2 2 0 0 3 4 3 0 0 2 0 0 18 1 1826.9989 Q96C36 Q96C36 290 307 PYCR2 Pyrroline-5-carboxylate reductase 2 yes yes 2 2.3756E-07 115.82 By MS/MS 6 0 1 1 5368900 0 0 5368900 14524 1758 15251 63889 53912 53912 1 0 0 803240 VKLQEMEGTVK ENARQQLERQNKELKVKLQEMEGTVKSKYK KELKVKLQEMEGTVKSKYKASITALEAKIA K V K V K S 0 0 0 0 0 1 2 1 0 0 1 2 1 0 0 0 1 0 0 2 0 0 11 1 1260.6748 P35579 P35579 1792 1802 MYH9 Myosin-9 yes yes 2;3 0.0014765 137.46 By matching By MS/MS By MS/MS 1.25 0.433 6 2 1 4 3 126900000 745240 107900000 18252000 14525 752 15252;15253 63890;63891;63892;63893;63894;63895;63896;63897 53913;53914;53915;53916;53917;53918 53915 365 6 745240 52628000 3935800 VKNFGIWLR EIVYCGQVFEKSPLRVKNFGIWLRYDSRSG EKSPLRVKNFGIWLRYDSRSGTHNMYREYR R V K L R Y 0 1 1 0 0 0 0 1 0 1 1 1 0 1 0 0 0 1 0 1 0 0 9 1 1131.6553 Q02543 Q02543 75 83 RPL18A 60S ribosomal protein L18a yes yes 2 0.045981 95.352 By MS/MS By matching 7 0 2 1 1 6436700 0 4738400 1698300 14526 1147 15254 63898;63899 53919 53919 1 0 2720800 301350 VKPAPDETSFSEALLK HIPFDFYLCEMAFPRVKPAPDETSFSEALL KPAPDETSFSEALLKRNQDLAPNSAEQASI R V K L K R 2 0 0 1 0 0 2 0 0 0 2 2 0 1 2 2 1 0 0 1 0 0 16 1 1730.9091 Q12905 Q12905 44 59 ILF2 Interleukin enhancer-binding factor 2 yes yes 2;3 1.0972E-05 114.27 By MS/MS By MS/MS 5.27 1.05 3 4 2 2 4 7 473500000 0 112020000 361490000 14527 1210 15255 63900;63901;63902;63903;63904;63905;63906;63907;63908;63909;63910 53920;53921;53922;53923;53924;53925;53926;53927 53921 8 0 29678000 51715000 VKPAPDETSFSEALLKR HIPFDFYLCEMAFPRVKPAPDETSFSEALL PAPDETSFSEALLKRNQDLAPNSAEQASIL R V K K R N 2 1 0 1 0 0 2 0 0 0 2 2 0 1 2 2 1 0 0 1 0 0 17 2 1887.0102 Q12905 Q12905 44 60 ILF2 Interleukin enhancer-binding factor 2 yes yes 3;4 4.251E-36 137.79 By MS/MS By MS/MS 5 0 3 2 1 33475000 0 20500000 12976000 14528 1210 15256 63911;63912;63913 53928;53929;53930 53929 3 0 5284200 1809900 VKPDVVQDKETER IKQRDKRLEWEMMCRVKPDVVQDKETERNL CRVKPDVVQDKETERNLQRIATRGVVQLFN R V K E R N 0 1 0 2 0 1 2 0 0 0 0 2 0 0 1 0 1 0 0 3 0 0 13 2 1541.8049 Q9Y3B9 Q9Y3B9 148 160 RRP15 RRP15-like protein yes yes 3 0.0036719 86.291 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 11229000 0 2625300 8604000 14529 2267 15257 63914;63915;63916;63917 53931;53932;53933 53933 3 0 843120 1225800 VKPEEMMDERPK PILKEFKEEGEEIPRVKPEEMMDERPKTRS IPRVKPEEMMDERPKTRSQEQEVLERGGRF R V K P K T 0 1 0 1 0 0 3 0 0 0 0 2 2 0 2 0 0 0 0 1 0 0 12 2 1487.7112 Q9UKV3 Q9UKV3 314 325 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 3 0.035685 61.11 By MS/MS 1 0 1 1 26772000 0 0 26772000 14530 2184 15258 63918 53934 53934 1 0 0 5768500 VKPFMTGAAEQIK MKSIKGKLEEQRPERVKPFMTGAAEQIKHI ERVKPFMTGAAEQIKHILANFKNYQFFIGE R V K I K H 2 0 0 0 0 1 1 1 0 1 0 2 1 1 1 0 1 0 0 1 0 0 13 1 1418.7592 P13693;Q56UQ5 P13693 111 123 TPT1 Translationally-controlled tumor protein;TPT1-like protein yes no 3 0.0084589 72.891 By MS/MS By MS/MS 7 0 2 1 1 29024000 0 11153000 17871000 14531 550 15259 63919;63920 53935;53936 53935 2 0 6404100 3171000 VKPLLQVSR YLKLRNWQWWRLFTKVKPLLQVSRQEEEMM WRLFTKVKPLLQVSRQEEEMMAKEEELVKV K V K S R Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 1 0 0 0 2 0 0 9 1 1038.655 P35579 P35579 834 842 MYH9 Myosin-9 yes yes 2 0.019102 103.83 By MS/MS 1 0 1 1 36549000 0 0 36549000 14532 752 15260 63921 53937 53937 1 0 0 7875100 VKPLLQVTR YLKLRHWQWWRVFTKVKPLLQVTRQEEELQ WRVFTKVKPLLQVTRQEEELQAKDEELLKV K V K T R Q 0 1 0 0 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 2 0 0 9 1 1052.6706 P35580;Q7Z406 P35580 841 849 MYH10;MYH14 Myosin-10;Myosin-14 no no 2 0.0035373 123.72 By MS/MS 1.5 0.5 1 1 2 31435000 0 31435000 0 14533 753;1531 15261 63922;63923 53938 53938 1 0 15299000 0 VKPLQDQNELFGK YLEMLLEYLQDYTDRVKPLQDQNELFGKIQ DRVKPLQDQNELFGKIQAEFEKKWENGTFP R V K G K I 0 0 1 1 0 2 1 1 0 0 2 2 0 1 1 0 0 0 0 1 0 0 13 1 1514.8093 Q12874 Q12874 200 212 SF3A3 Splicing factor 3A subunit 3 yes yes 2;3 0.026042 104.95 By MS/MS 4.17 1.07 2 2 1 1 6 94015000 0 0 94015000 14534 1206 15262 63924;63925;63926;63927;63928;63929 53939;53940 53939 2 0 0 15963000 VKPYIIDLGSGNGTFLNNK RLVEYTRADGTVGRRVKPYIIDLGSGNGTF IIDLGSGNGTFLNNKRIEPQRYYELKEKDV R V K N K R 0 0 3 1 0 0 0 3 0 2 2 2 0 1 1 1 1 0 1 1 0 0 19 1 2049.0895 Q8TAD8 Q8TAD8 324 342 SNIP1 Smad nuclear-interacting protein 1 yes yes 3 0.0018444 63.883 By MS/MS 4.5 0.5 1 1 2 6180800 0 6180800 0 14535 1650 15263 63930;63931 53941;53942 53942 2 0 1842600 0 VKSPELQAEAK YFQTVTDYGKDLMEKVKSPELQAEAKSYFE LMEKVKSPELQAEAKSYFEKSKEQLTPLIK K V K A K S 2 0 0 0 0 1 2 0 0 0 1 2 0 0 1 1 0 0 0 1 0 0 11 1 1198.6558 P02652 P02652 52 62 APOA2 Apolipoprotein A-II;Proapolipoprotein A-II;Truncated apolipoprotein A-II yes yes 3 0.013324 71.888 By MS/MS 9 0 1 1 2155700 2155700 0 0 14536 390 15264 63932 53943 53943 1 1210000 0 0 VKVDEVGGEALGR LSAEEKAAVTSLFAKVKVDEVGGEALGRLL AKVKVDEVGGEALGRLLVVYPWTQRFFESF K V K G R L 1 1 0 1 0 0 2 3 0 0 1 1 0 0 0 0 0 0 0 3 0 0 13 1 1327.7096 CON__Q3SX09;CON__P02070 CON__Q3SX09 73 85 yes no 2;3 1.5242E-11 143.97 By MS/MS By MS/MS By MS/MS 8.16 2.06 1 1 1 2 3 5 6 8 2 9 2097400000 340950000 93241000 1663200000 + 14537 82 15265 63933;63934;63935;63936;63937;63938;63939;63940;63941;63942;63943;63944;63945;63946;63947;63948;63949;63950;63951 53944;53945;53946;53947;53948;53949;53950;53951;53952;53953;53954;53955;53956;53957;53958 53945 15 213080000 471720000 786460000 VKVEEEEEEKVAEEEETSVK EDEITEKKAKKAKIKVKVEEEEEEKVAEEE EEEEKVAEEEETSVKKKKKRGKKKHIKEEP K V K V K K 1 0 0 0 0 0 10 0 0 0 0 3 0 0 0 1 1 0 0 4 0 0 20 2 2348.1119 Q9Y2X3 Q9Y2X3 466 485 NOP58 Nucleolar protein 58 yes yes 3 0.0026464 59.242 By MS/MS 3 0.816 1 1 1 3 26607000 0 0 26607000 14538 2254 15266 63952;63953;63954 53959 53959 1 0 0 4778900 VKVEPAVDTSR TMKYGGELVPHFPARVKVEPAVDTSRIKVF FPARVKVEPAVDTSRIKVFGPGIEGKDVFR R V K S R I 1 1 0 1 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 3 0 0 11 1 1199.651 O75369 O75369 1220 1230 FLNB Filamin-B yes yes 3 0.06133 47.039 By MS/MS 1 0 1 1 2923700 0 2923700 0 14539 254 15267 63955 53960 53960 1 0 1429100 0 VKVEPIPAIGHATLGTASR PKAEAQENGDHREVKVKVEPIPAIGHATLG PIPAIGHATLGTASRIIQTAQTTPVQTVTI K V K S R I 3 1 0 0 0 0 1 2 1 2 1 1 0 0 2 1 2 0 0 2 0 0 19 1 1916.0843 Q01167 Q01167 526 544 FOXK2 Forkhead box protein K2 yes yes 3 0.041377 35.421 By MS/MS 3 0 1 1 2761900 0 2761900 0 14540 1132 15268 63956 53961 53961 1 0 1177400 0 VKVETYNDESR VFQNANFRSFIFRVRVKVETYNDESRIKAT FRVRVKVETYNDESRIKATVMDVKPVDYRE R V K S R I 0 1 1 1 0 0 2 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 11 1 1338.6416 P27694 P27694 576 586 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2;3 1.2801E-18 192.92 By MS/MS 3 0 2 2 11406000 0 0 11406000 14541 679 15269 63957;63958 53962;53963 53962 2 0 0 2212200 VKYETELAMR VLQIDNARLAADDFRVKYETELAMRQSVEN ADDFRVKYETELAMRQSVENDIHGLRKVID R V K M R Q 1 1 0 0 0 0 2 0 0 0 1 1 1 0 0 0 1 0 1 1 0 0 10 1 1238.6329 CON__P05784;P05783 P05783 166 175 KRT18 Keratin, type I cytoskeletal 18 no no 2;3 4.7556E-05 138.1 By matching By MS/MS By MS/MS 4.06 1.43 1 1 4 4 5 1 1 1 6 10 2043800000 2431000 500890000 1540500000 + 14542 436;48 15270;15271 63959;63960;63961;63962;63963;63964;63965;63966;63967;63968;63969;63970;63971;63972;63973;63974;63975 53964;53965;53966;53967;53968;53969;53970;53971;53972;53973;53974;53975;53976;53977 53971 14 2804800 133750000 226180000 VLAALQER SNTEKLTDQVMQNPRVLAALQERLDNVPHT QVMQNPRVLAALQERLDNVPHTPSSYIETL R V L E R L 2 1 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 8 0 898.52362 Q99733 Q99733 37 44 NAP1L4 Nucleosome assembly protein 1-like 4 yes yes 2 0.00020546 139.31 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 45084000 0 6329900 38754000 14543 1862 15272 63976;63977;63978;63979 53978;53979;53980 53979 3 0 2100700 5997600 VLADPSDDTK DVAYRRGYFDEEMNRVLADPSDDTKGFFDP EEMNRVLADPSDDTKGFFDPNTHENLTYLQ R V L T K G 1 0 0 3 0 0 0 0 0 0 1 1 0 0 1 1 1 0 0 1 0 0 10 0 1059.5084 P58107;Q15149 Q15149 2979 2988 EPPK1;PLEC Epiplakin;Plectin no no 2 0.020459 82.749 By MS/MS By matching 2.75 1.48 1 1 1 1 2 2 42377000 0 32436000 9940300 14544 1348;958 15273 63980;63981;63982;63983 53981;53982 53981 2 0 15295000 1810400 VLAEDEELYGDFEDLETGDVHK CFVTGKWEDDKDAAKVLAEDEELYGDFEDL LYGDFEDLETGDVHKGKSGPNTQNEDIEKE K V L H K G 1 0 0 4 0 0 5 2 1 0 3 1 0 1 0 0 1 0 1 2 0 0 22 0 2522.1337 Q14692 Q14692 772 793 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 2.0779E-20 136.58 By MS/MS 2 0 1 1 9936400 0 0 9936400 14545 1315 15274 63984 53983 53983 1 0 0 2245400 VLAFLSSVAGDALTR PYLVPKLTTPPVNTRVLAFLSSVAGDALTR VLAFLSSVAGDALTRHLGVILPAVMLALKE R V L T R H 3 1 0 1 0 0 0 1 0 0 3 0 0 1 0 2 1 0 0 2 0 0 15 0 1518.8406 Q92616 Q92616 2093 2107 GCN1L1 Translational activator GCN1 yes yes 2 0.00028234 130.56 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 5224400 0 1924800 3299700 14546 1712 15275 63985;63986;63987 53984;53985 53985 2 0 916590 710970 VLAFLVLSR KRMVIVWSTGEESLRVLAFLVLSRVCRHKK GEESLRVLAFLVLSRVCRHKKDTFLGPVLK R V L S R V 1 1 0 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 2 0 0 9 0 1016.6383 Q9Y3T9 Q9Y3T9 311 319 NOC2L Nucleolar complex protein 2 homolog yes yes 2 6.9345E-32 201.49 By MS/MS 2 0.816 1 1 1 3 14732000 0 0 14732000 14547 2277 15276 63988;63989;63990 53986;53987;53988 53988 3 0 0 3004700 VLAGDKNFITAEELR TTDTDTADQVIASFKVLAGDKNFITAEELR VLAGDKNFITAEELRRELPPDQAEYCIARM K V L L R R 2 1 1 1 0 0 2 1 0 1 2 1 0 1 0 0 1 0 0 1 0 0 15 1 1674.8941 O43707 O43707 854 868 ACTN4 Alpha-actinin-4 yes yes 2;3 1.7262E-10 175.54 By MS/MS By MS/MS 2.25 0.433 3 1 2 2 64131000 0 27295000 36836000 14548 210 15277 63991;63992;63993;63994 53989;53990;53991 53991 3 0 12220000 8324300 VLAGDKNFITAEELRR TTDTDTADQVIASFKVLAGDKNFITAEELR LAGDKNFITAEELRRELPPDQAEYCIARMA K V L R R E 2 2 1 1 0 0 2 1 0 1 2 1 0 1 0 0 1 0 0 1 0 0 16 2 1830.9952 O43707 O43707 854 869 ACTN4 Alpha-actinin-4 yes yes 4 3.3155E-19 190.44 By MS/MS 2 0 1 1 38774000 0 38774000 0 14549 210 15278 63995 53992 53992 1 0 17461000 0 VLAGETLSVNDPPDVLDR TIHLTSPVVREEMEKVLAGETLSVNDPPDV GETLSVNDPPDVLDRQKCLAALASLRHAKW K V L D R Q 1 1 1 3 0 0 1 1 0 0 3 0 0 0 2 1 1 0 0 3 0 0 18 0 1908.9793 Q12906 Q12906 183 200 ILF3 Interleukin enhancer-binding factor 3 yes yes 2;3 2.9165E-79 239.19 By MS/MS By MS/MS 2 0.775 3 4 3 4 6 226230000 0 56354000 169870000 14550 1211 15279 63996;63997;63998;63999;64000;64001;64002;64003;64004;64005 53993;53994;53995;53996;53997;53998;53999;54000;54001 53994 9 0 25438000 37187000 VLAGQTLDINMAGEPK NERHARAAVLGENGRVLAGQTLDINMAGEP LAGQTLDINMAGEPKPDRPKGLKRAASAIY R V L P K P 2 0 1 1 0 1 1 2 0 1 2 1 1 0 1 0 1 0 0 1 0 0 16 0 1655.8553 Q9UKM9 Q9UKM9 79 94 RALY RNA-binding protein Raly yes yes 2 4.4957E-05 116.01 By MS/MS By matching 6.33 0.471 2 1 1 2 7264000 0 3615800 3648200 14551 2181 15280 64006;64007;64008 54002 54002 1 0 1251700 587010 VLAGQTLDINMAGEPKPDRPK NERHARAAVLGENGRVLAGQTLDINMAGEP LDINMAGEPKPDRPKGLKRAASAIYSGYIF R V L P K G 2 1 1 2 0 1 1 2 0 1 2 2 1 0 3 0 1 0 0 1 0 0 21 2 2249.1838 Q9UKM9 Q9UKM9 79 99 RALY RNA-binding protein Raly yes yes 2;3;4 3.7868E-161 287.42 By matching By MS/MS By MS/MS 5.42 1.14 1 3 5 8 1 1 1 9 9 485060000 6656600 261030000 217370000 14552 2181 15281;15282 64009;64010;64011;64012;64013;64014;64015;64016;64017;64018;64019;64020;64021;64022;64023;64024;64025;64026;64027 54003;54004;54005;54006;54007;54008;54009;54010;54011;54012;54013;54014;54015;54016;54017 54014 704 15 5193300 88728000 32322000 VLAIAQNFV PIPTSLRKREGEYSKVLAIAQNFV______ EGEYSKVLAIAQNFV_______________ K V L F V - 2 0 1 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 2 0 0 9 0 973.55967 Q6P1L8 Q6P1L8 137 145 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 2 0.022804 80.377 By MS/MS 9 0 1 1 14945000 14945000 0 0 14553 1487 15283 64028 54018 54018 1 8388600 0 0 VLALELFEQITK LEQWIEKRRGEKLDKVLALELFEQITKGVD LDKVLALELFEQITKGVDYIHSKKLIHRDL K V L T K G 1 0 0 0 0 1 2 0 0 1 3 1 0 1 0 0 1 0 0 1 0 0 12 0 1402.8072 P19525 P19525 389 400 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00010661 139.43 By MS/MS 3 0 1 1 9255800 0 0 9255800 14554 609 15284 64029 54019 54019 1 0 0 1795200 VLALPEPSPAAPTLR GLGKGVARLSAEAEKVLALPEPSPAAPTLR VLALPEPSPAAPTLRSELELTLGKLEQVRS K V L L R S 3 1 0 0 0 0 1 0 0 0 3 0 0 0 4 1 1 0 0 1 0 0 15 0 1530.877 Q15149 Q15149 1187 1201 PLEC Plectin yes yes 2 6.2069E-06 163.34 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 2 1 64377000 1384100 39189000 23804000 14555 1348 15285 64030;64031;64032;64033 54020;54021;54022 54020 3 1384100 19105000 5128900 VLALSVETDYTFPLAEK TVASVPHSIINGYKRVLALSVETDYTFPLA ALSVETDYTFPLAEKVKAFLADPSAFVAAA R V L E K V 2 0 0 1 0 0 2 0 0 0 3 1 0 1 1 1 2 0 1 2 0 0 17 0 1894.9928 P05388 P05388 248 264 RPLP0 60S acidic ribosomal protein P0 yes yes 2 1.1713E-05 138.42 By MS/MS 6 0 1 1 13770000 0 13770000 0 14556 432 15286 64034 54023 54023 1 0 4766700 0 VLAMSGDPNYLHR EKFGKEWAHATIIPKVLAMSGDPNYLHRMT PKVLAMSGDPNYLHRMTTLFCINVLSEVCG K V L H R M 1 1 1 1 0 0 0 1 1 0 2 0 1 0 1 1 0 0 1 1 0 0 13 0 1471.7242 P30153 P30153 486 498 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform yes yes 3 0.0022104 86.028 By matching By MS/MS By MS/MS 4 0 3 1 1 1 28681000 1793200 10661000 16227000 14557 712 15287 64035;64036;64037 54024;54025 54024 2 1399000 3538000 2650400 VLANNSLSFEK GSFKEALNVINTHTKVLANNSLSFEKAYCE THTKVLANNSLSFEKAYCEYRLNRIENALK K V L E K A 1 0 2 0 0 0 1 0 0 0 2 1 0 1 0 2 0 0 0 1 0 0 11 0 1220.6401 O76094 O76094 74 84 SRP72 Signal recognition particle subunit SRP72 yes yes 2 0.0077877 95.523 By MS/MS 3 0 1 1 23103000 0 0 23103000 14558 296 15288 64038 54026 54026 1 0 0 4480800 VLANPGNSQVAR AAVENLPTFLVELSRVLANPGNSQVARVAA LSRVLANPGNSQVARVAAGLQIKNSLTSKD R V L A R V 2 1 2 0 0 1 0 1 0 0 1 0 0 0 1 1 0 0 0 2 0 0 12 0 1224.6575 Q14974 Q14974 43 54 KPNB1 Importin subunit beta-1 yes yes 2 4.5206E-05 147.4 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 14286000 0 6118400 8167100 14559 1325 15289 64039;64040 54027;54028 54028 2 0 2755200 1584000 VLAPILPDNFSTPTGSR PRDSPAFPDSPWRERVLAPILPDNFSTPTG APILPDNFSTPTGSRTDSQSVRHSPIAPSS R V L S R T 1 1 1 1 0 0 0 1 0 1 2 0 0 1 3 2 2 0 0 1 0 0 17 0 1783.9468 Q9NQS7 Q9NQS7 281 297 INCENP Inner centromere protein yes yes 2 8.8057E-06 138.42 By matching By MS/MS By MS/MS 3.25 1.39 1 2 1 2 2 3 3 2 36321000 8177500 13874000 14270000 14560 2034 15290 64041;64042;64043;64044;64045;64046;64047;64048 54029;54030;54031;54032 54031 4 8001700 5308600 2793000 VLAQNSGFDLQETLVK LGVQAFADALLIIPKVLAQNSGFDLQETLV LAQNSGFDLQETLVKIQAEHSESGQLVGVD K V L V K I 1 0 1 1 0 2 1 1 0 0 3 1 0 1 0 1 1 0 0 2 0 0 16 0 1760.9309 P40227 P40227 450 465 CCT6A T-complex protein 1 subunit zeta yes yes 2 5.548E-26 196.38 By MS/MS 4 0 1 1 20906000 0 20906000 0 14561 783 15291 64049 54033 54033 1 0 6937800 0 VLAQYYTVTDEHHR QAPDNEITIKKLRKKVLAQYYTVTDEHHRS KVLAQYYTVTDEHHRSEEELLVIFNKKISK K V L H R S 1 1 0 1 0 1 1 0 2 0 1 0 0 0 0 0 2 0 2 2 0 0 14 0 1730.8376 Q9NX58 Q9NX58 336 349 LYAR Cell growth-regulating nucleolar protein yes yes 2;3;4 2.3984E-11 178.54 By MS/MS By MS/MS 4.57 0.495 3 4 2 5 118240000 0 16383000 101850000 14562 2086 15292 64050;64051;64052;64053;64054;64055;64056 54034;54035;54036;54037 54037 4 0 4515100 14580000 VLASLIIR DTALDMRGRCSAGQKVLASLIIRLALAETF RCSAGQKVLASLIIRLALAETFCLNCGIIA K V L I R L 1 1 0 0 0 0 0 0 0 2 2 0 0 0 0 1 0 0 0 1 0 0 8 0 883.58549 Q92878 Q92878 1207 1214 RAD50 DNA repair protein RAD50 yes yes 2 4.6427E-06 158.38 By MS/MS 1.5 0.5 1 1 2 11551000 0 0 11551000 14563 1726 15293 64057;64058 54038;54039 54039 2 0 0 2550600 VLATVTKPVGGDK YSAAKSKVEKKKKEKVLATVTKPVGGDKNG EKVLATVTKPVGGDKNGGTRVVKLRKMPRY K V L D K N 1 0 0 1 0 0 0 2 0 0 1 2 0 0 1 0 2 0 0 3 0 0 13 1 1283.7449 Q02878 Q02878 88 100 RPL6 60S ribosomal protein L6 yes yes 2;3 0.00093796 152.07 By matching By MS/MS By MS/MS 4.28 2.47 5 2 3 3 4 4 2 1 1 1 9 15 680390000 1804100 311890000 366700000 14564 1149 15294 64059;64060;64061;64062;64063;64064;64065;64066;64067;64068;64069;64070;64071;64072;64073;64074;64075;64076;64077;64078;64079;64080;64081;64082;64083 54040;54041;54042;54043;54044;54045;54046;54047;54048;54049;54050;54051;54052;54053;54054;54055;54056;54057 54052 18 1804100 104800000 66366000 VLAVNQENEHLMEDYEK SGAQKAETAANRICKVLAVNQENEHLMEDY AVNQENEHLMEDYEKLASDLLEWIRRTIPW K V L E K L 1 0 2 1 0 1 4 0 1 0 2 1 1 0 0 0 0 0 1 2 0 0 17 0 2059.9521 O43707 O43707 284 300 ACTN4 Alpha-actinin-4 yes yes 2;3 7.8894E-76 244.58 By MS/MS By MS/MS 2.29 0.881 1 4 1 1 3 4 184880000 0 41143000 143740000 14565 210 15295;15296 64084;64085;64086;64087;64088;64089;64090 54058;54059;54060;54061 54060 89 4 0 18603000 32183000 VLAVNQENEQLMEDYEK SGAQKAETAANRICKVLAVNQENEQLMEDY AVNQENEQLMEDYEKLASDLLEWIRRTIPW K V L E K L 1 0 2 1 0 2 4 0 0 0 2 1 1 0 0 0 0 0 1 2 0 0 17 0 2050.9517 P12814 P12814 265 281 ACTN1 Alpha-actinin-1 yes yes 2 8.3822E-61 229.54 By MS/MS By MS/MS 2 0 2 1 1 17421000 0 5083100 12337000 14566 540 15297 64091;64092 54062;54063 54063 2 0 2289000 2788000 VLDAIIQEK EEAKSSLAMNRSRGKVLDAIIQEKKSGRIP NRSRGKVLDAIIQEKKSGRIPGIYGRLGDL K V L E K K 1 0 0 1 0 1 1 0 0 2 1 1 0 0 0 0 0 0 0 1 0 0 9 0 1027.5914 Q9NTJ3 Q9NTJ3 599 607 SMC4 Structural maintenance of chromosomes protein 4 yes yes 2 0.0007631 112.84 By MS/MS By MS/MS 2 0 2 1 1 9422400 0 3613600 5808800 14567 2054 15298 64093;64094 54064;54065 54065 2 0 1627200 1312700 VLDALVFHFLGFR FLRLLLDKKYALPYRVLDALVFHFLGFRTE YRVLDALVFHFLGFRTEKRELPVLWHQCLL R V L F R T 1 1 0 1 0 0 0 1 1 0 3 0 0 3 0 0 0 0 0 2 0 0 13 0 1532.8504 Q13895 Q13895 356 368 BYSL Bystin yes yes 3 0.00067578 104.07 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 3189600 0 508430 2681100 14568 1276 15299 64095;64096;64097 54066;54067 54067 2 0 131060 451320 VLDELTLAR NLRMSVEADINGLRRVLDELTLARADLEMQ INGLRRVLDELTLARADLEMQIESLKEELA R V L A R A 1 1 0 1 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 9 0 1028.5866 CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;Q04695;CON__Q04695;CON__Q6IFX2;CON__P08727;P08727 CON__P02533 224 232 KRT14;KRT16;KRT17;KRT19 Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 19 no no 1;2 1.0463E-31 198.87 By MS/MS By MS/MS By MS/MS 6.58 2.43 2 2 3 3 6 2 3 3 9 3 12 2350100000 1065600000 229190000 1055300000 + 14569 35;73;53;51;91 15300 64098;64099;64100;64101;64102;64103;64104;64105;64106;64107;64108;64109;64110;64111;64112;64113;64114;64115;64116;64117;64118;64119;64120;64121 54068;54069;54070;54071;54072;54073;54074;54075;54076;54077;54078;54079;54080;54081;54082;54083;54084;54085;54086;54087 54081 20 945240000 63910000 208320000 VLDELTLSK ALRQSVEADINGLRRVLDELTLSKTDLEMQ INGLRRVLDELTLSKTDLEMQIESLNEELA R V L S K T 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 1 1 0 0 1 0 0 9 0 1016.5754 CON__P13646-1;P13646;CON__ENSEMBL:ENSP00000377550;CON__P02535-1 P13646 214 222 KRT13 Keratin, type I cytoskeletal 13 no no 2 0.00063974 128.69 By MS/MS 1 0 1 1 62659000 62659000 0 0 + 14570 57;548;36 15301 64122 54088 54088 1 62659000 0 0 VLDELTLTK ALRQSVEADINGLRRVLDELTLTKADLEMQ INGLRRVLDELTLTKADLEMQIESLTEELA R V L T K A 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 2 0 0 1 0 0 9 0 1030.591 P13645;CON__P13645 P13645 258 266 KRT10 Keratin, type I cytoskeletal 10 yes no 2 9.627E-05 143.01 By MS/MS By MS/MS By MS/MS 5.5 2.87 3 3 3 3 3 3 3 3 3 3 10 10 10 18352000000 12766000000 1010800000 4574500000 + 14571 56 15302 64123;64124;64125;64126;64127;64128;64129;64130;64131;64132;64133;64134;64135;64136;64137;64138;64139;64140;64141;64142;64143;64144;64145;64146;64147;64148;64149;64150;64151;64152 54089;54090;54091;54092;54093;54094;54095;54096;54097;54098;54099;54100;54101;54102;54103;54104;54105;54106;54107;54108;54109;54110;54111;54112;54113;54114;54115;54116;54117;54118;54119;54120;54121;54122;54123;54124;54125;54126;54127;54128;54129;54130;54131 54097 43 12516000000 934990000 1893500000 VLDETAR GIKALYESELADARRVLDETARERARLQIE SELADARRVLDETARERARLQIEIGKLRAE R V L A R E 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 7 0 802.41848 Q03252 Q03252 106 112 LMNB2 Lamin-B2 yes yes 2 0.021058 100.67 By matching By MS/MS 2.5 0.5 1 1 1 1 17904000 2218200 0 15686000 14572 1156 15303 64153;64154 54132 54132 1 2672700 0 3042300 VLDFEHFLPMLQTVAK LKVLGNPKSDEMNVKVLDFEHFLPMLQTVA LDFEHFLPMLQTVAKNKDQGTYEDYVEGLR K V L A K N 1 0 0 1 0 1 1 0 1 0 3 1 1 2 1 0 1 0 0 2 0 0 16 0 1886.9964 P60660 P60660 64 79 MYL6 Myosin light polypeptide 6 yes yes 2;3 0.0017881 92.112 By MS/MS By matching By MS/MS 8.56 0.497 4 5 1 1 7 72681000 1289700 3321000 68070000 14573 965 15304;15305 64155;64156;64157;64158;64159;64160;64161;64162;64163 54133;54134;54135;54136;54137;54138;54139 54138 462 7 723910 1511000 15331000 VLDIIYQPQAIFR SLGKTLESQAVETEKVLDIIYQPQAIFRVR EKVLDIIYQPQAIFRVRAVTRCTSSLEGHS K V L F R V 1 1 0 1 0 2 0 0 0 3 1 0 0 1 1 0 0 0 1 1 0 0 13 0 1574.8821 Q9NVX2 Q9NVX2 87 99 NLE1 Notchless protein homolog 1 yes yes 2 6.6631E-12 183.47 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 31890000 0 13314000 18575000 14574 2073 15306 64164;64165;64166;64167 54140;54141;54142;54143 54142 4 0 4013700 2880400 VLDILEDYCMWR KEQGSRVLIFSQMTRVLDILEDYCMWRNYE MTRVLDILEDYCMWRNYEYCRLDGQTPHDE R V L W R N 0 1 0 2 1 0 1 0 0 1 2 0 1 0 0 0 0 1 1 1 0 0 12 0 1611.7425 O60264 O60264 511 522 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2 0.0001707 134.23 By MS/MS 2 0 1 1 3546600 0 0 3546600 14575 223 15307 64168 54144 54144 1 0 0 801450 VLDILLEQYPALITGR AMTHITEGIQEDSLKVLDILLEQYPALITG LDILLEQYPALITGRSSILLKNFVELISHQ K V L G R S 1 1 0 1 0 1 1 1 0 2 4 0 0 0 1 0 1 0 1 1 0 0 16 0 1813.0349 Q9NXF1 Q9NXF1 163 178 TEX10 Testis-expressed sequence 10 protein yes yes 2 1.2382E-46 220.66 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 17859000 0 5071100 12788000 14576 2089 15308 64169;64170;64171;64172 54145;54146 54145 2 0 2283600 2522600 VLDINDNEPVFTQDVFVGSVEELSAAHTLVMK ARGNNVEKPLELRIKVLDINDNEPVFTQDV GSVEELSAAHTLVMKINATDADEPNTLNSK K V L M K I 2 0 2 3 0 1 3 1 1 1 3 1 1 2 1 2 2 0 0 6 0 0 32 0 3515.7494 Q14126 Q14126 149 180 DSG2 Desmoglein-2 yes yes 3 0.00061588 37.579 By MS/MS 2 0 1 1 5829100 0 0 5829100 14577 1282 15309 64173 54147 54147 1 0 0 1317300 VLDLDLFR ______________________________ ______________________________ M V L F R V 0 1 0 2 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 1 0 0 8 0 989.55458 P49591 P49591 2 9 SARS Serine--tRNA ligase, cytoplasmic yes yes 2 0.00038082 130.77 By MS/MS 4 0 1 1 2092000 0 0 2092000 14578 859 15310 64174 54148 54148 1 0 0 341700 VLDLLDPASGDLVIR ALSVTMSYLEIYQEKVLDLLDPASGDLVIR VLDLLDPASGDLVIREDCRGNILIPGLSQK K V L I R E 1 1 0 3 0 0 0 1 0 1 4 0 0 0 1 1 0 0 0 2 0 0 15 0 1594.893 Q14807 Q14807 184 198 KIF22 Kinesin-like protein KIF22 yes yes 2 0.00029623 121.08 By matching By MS/MS 2.5 0.5 1 1 1 1 13039000 0 1828500 11210000 14579 1320 15311 64175;64176 54149 54149 1 0 823410 2174300 VLDLVEVLVTK KLQKEKALRRDFQIRVLDLVEVLVTKQPEN FQIRVLDLVEVLVTKQPENALVLELLEPLL R V L T K Q 0 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 1 0 0 4 0 0 11 0 1226.7486 Q9BQG0 Q9BQG0 828 838 MYBBP1A Myb-binding protein 1A yes yes 2 0.00032778 126.39 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 57565000 0 5470500 52095000 14580 1885 15312 64177;64178;64179;64180;64181 54150;54151;54152 54152 3 0 2524300 11532000 VLDMPTQELGLPAYR SLQMEILTELGLHFRVLDMPTQELGLPAYR VLDMPTQELGLPAYRKFDIEAWMPGRGRFG R V L Y R K 1 1 0 1 0 1 1 1 0 0 3 0 1 0 2 0 1 0 1 1 0 0 15 0 1701.876 Q9NP81 Q9NP81 388 402 SARS2 Serine--tRNA ligase, mitochondrial yes yes 2 0.0092365 77.062 By MS/MS 4 0 1 1 5738800 0 5738800 0 14581 2021 15313 64182 54153 54153 1 0 1904500 0 VLDNAIETEK SKMKALAVEGKRIGKVLDNAIETEKMIEKY KRIGKVLDNAIETEKMIEKYESLASDLLEW K V L E K M 1 0 1 1 0 0 2 0 0 1 1 1 0 0 0 0 1 0 0 1 0 0 10 0 1130.5819 Q01082 Q01082 293 302 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 8.4369E-05 147.51 By matching By MS/MS By MS/MS 1 0 3 1 1 1 62912000 2282100 33655000 26975000 14582 1128 15314 64183;64184;64185 54154;54155 54154 2 2282100 16450000 5812200 VLDPASSDFTR DTQLVNSLLEKASEKVLDPASSDFTRLSVL ASEKVLDPASSDFTRLSVLDLVVALAPCAD K V L T R L 1 1 0 2 0 0 0 0 0 0 1 0 0 1 1 2 1 0 0 1 0 0 11 0 1206.5881 Q5JTH9 Q5JTH9 740 750 RRP12 RRP12-like protein yes yes 2 0.00095088 114.86 By matching By MS/MS By MS/MS 1.75 0.433 1 3 2 1 1 36895000 20096000 10162000 6636500 14583 1438 15315 64186;64187;64188;64189 54156;54157 54156 2 20762000 4576200 1499700 VLDPFTIKPLDR LAAAELLKKEKINIRVLDPFTIKPLDRKLI NIRVLDPFTIKPLDRKLILDSARATKGRIL R V L D R K 0 1 0 2 0 0 0 0 0 1 2 1 0 1 2 0 1 0 0 1 0 0 12 1 1412.8028 P29401 P29401 531 542 TKT Transketolase yes yes 3 0.0040474 86.313 By MS/MS By MS/MS 3 0 2 1 1 15202000 0 1747100 13454000 14584 699 15316 64190;64191 54158;54159 54159 2 0 744780 2609500 VLDPNTVFALVNYISFK YVEKGSHGKIVELVKVLDPNTVFALVNYIS DPNTVFALVNYISFKGKWEKPFEMKHTTER K V L F K G 1 0 2 1 0 0 0 0 0 1 2 1 0 2 1 1 1 0 1 3 0 0 17 0 1939.0455 CON__P34955 CON__P34955 197 213 yes yes 2;3 4.4717E-05 103.85 By MS/MS By MS/MS By MS/MS 3.67 1.74 2 2 2 5 3 1 4 1 10 52248000 4914200 774300 46559000 + 14585 64 15317 64192;64193;64194;64195;64196;64197;64198;64199;64200;64201;64202;64203;64204;64205;64206 54160;54161;54162;54163;54164;54165;54166;54167;54168;54169 54160 10 3842600 256960 8838600 VLDQYIFELSR KLPMNKDVCDEGNTKVLDQYIFELSRKTQI GNTKVLDQYIFELSRKTQIPEVFLTKILES K V L S R K 0 1 0 1 0 1 1 0 0 1 2 0 0 1 0 1 0 0 1 1 0 0 11 0 1381.7242 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 341 351 yes no 2 5.9467E-14 182.92 By MS/MS By MS/MS By MS/MS 4 0 3 1 1 1 33405000 17739000 6027400 9638500 + 14586 26 15318 64207;64208;64209 54170;54171;54172 54170 3 13839000 2000300 1574300 VLDSFCEGLK DAILGNPKVKAHGKKVLDSFCEGLKQLDDL AHGKKVLDSFCEGLKQLDDLKGAFASLSEL K V L L K Q 0 0 0 1 1 0 1 1 0 0 2 1 0 1 0 1 0 0 0 1 0 0 10 0 1166.5642 CON__Q3SX09 CON__Q3SX09 122 131 yes yes 2 1.2566E-05 152.47 By MS/MS By MS/MS 8.8 0.748 2 2 1 2 3 212520000 52090000 0 160430000 + 14587 82 15319 64210;64211;64212;64213;64214 54173;54174;54175;54176 54174 4 29752000 0 260640000 VLDTKWTLLQEQGTK ASFIDKVRFLEQQNKVLDTKWTLLQEQGTK VLDTKWTLLQEQGTKTVRQNLEPLFEQYIN K V L T K T 0 0 0 1 0 2 1 1 0 0 3 2 0 0 0 0 3 1 0 1 0 0 15 1 1758.9516 CON__P04259;CON__P13647;P13647;CON__P48668;P48668 CON__P48668 190 204 KRT5;KRT6C Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 3 4.797E-06 161.84 By MS/MS 9 0 1 1 10911000 10911000 0 0 + 14588 68;58;47 15320 64215 54177 54177 1 6124700 0 0 VLEAAAQAAR LLEMDARLHEDHLERVLEAAAQAARDVHTL DHLERVLEAAAQAARDVHTLLDRVVRQHVR R V L A R D 5 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 10 0 998.55089 Q9NPD3 Q9NPD3 213 222 EXOSC4 Exosome complex component RRP41 yes yes 2 0.0019656 107.29 By MS/MS 7 0 1 1 12631000 0 12631000 0 14589 2025 15321 64216 54178 54178 1 0 7252900 0 VLEALLPLK ICFFVQQFTDMEHNRVLEALLPLKGLEERV DMEHNRVLEALLPLKGLEERVAAAVDLIIK R V L L K G 1 0 0 0 0 0 1 0 0 0 4 1 0 0 1 0 0 0 0 1 0 0 9 0 994.64267 P49327 P49327 2383 2391 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.052039 70.919 By MS/MS 1 0 1 1 3102300 0 0 3102300 14590 853 15322 64217 54179 54179 1 0 0 668430 VLEDEEGSK AVKAALFNTRIPRVRVLEDEEGSKDIELSD RIPRVRVLEDEEGSKDIELSDDPYDCIRLS R V L S K D 0 0 0 1 0 0 3 1 0 0 1 1 0 0 0 1 0 0 0 1 0 0 9 0 1004.4662 Q15024 Q15024 170 178 EXOSC7 Exosome complex component RRP42 yes yes 2 0.0085699 90.657 By MS/MS 6 0 1 1 885650 0 0 885650 14591 1334 15323 64218 54180;54181;54182 54182 3 0 0 132500 VLEDGKQQVQVVGLQER SGKVFDLLNRKTKLRVLEDGKQQVQVVGLQ EDGKQQVQVVGLQEREVKCVEDVLKLIDIG R V L E R E 0 1 0 1 0 4 2 2 0 0 2 1 0 0 0 0 0 0 0 4 0 0 17 1 1924.0378 O00139 O00139 386 402 KIF2A Kinesin-like protein KIF2A yes yes 3 2.1703E-06 117.67 By MS/MS 2 0 1 1 6023500 0 6023500 0 14592 104 15324 64219 54183 54183 1 0 2712500 0 VLEDSDLKK LNMDLFRSTMKPVQKVLEDSDLKKSDIDEI MKPVQKVLEDSDLKKSDIDEIVLVGGSTRI K V L K K S 0 0 0 2 0 0 1 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 9 1 1045.5655 P11021 P11021 345 353 HSPA5 78 kDa glucose-regulated protein yes yes 2 0.034382 82.452 By MS/MS 3 0 1 1 8277800 0 0 8277800 14593 516 15325 64220 54184 54184 1 0 0 1605500 VLEDVTGEEFVLFMK LTKEVEELILTESKKVLEDVTGEEFVLFMK VLEDVTGEEFVLFMKILSGLKSLQTVSGRQ K V L M K I 0 0 0 1 0 0 3 1 0 0 2 1 1 2 0 0 1 0 0 3 0 0 15 0 1754.8801 Q9BZZ5 Q9BZZ5 182 196 API5 Apoptosis inhibitor 5 yes yes 2 0.014599 72.652 By MS/MS 4 0 1 1 7633400 0 0 7633400 14594 1947 15326 64221 54185 54185 1 0 0 1246800 VLEEANQAINPK FFTPGNLKQARELIKVLEEANQAINPKLMQ LIKVLEEANQAINPKLMQLVDHRGGGGGGG K V L P K L 2 0 2 0 0 1 2 0 0 1 1 1 0 0 1 0 0 0 0 1 0 0 12 0 1324.6987 Q92841 Q92841 536 547 DDX17 Probable ATP-dependent RNA helicase DDX17 yes yes 2 9.7673E-19 195.17 By MS/MS By MS/MS By MS/MS 3.77 2.19 2 2 3 2 1 2 1 1 6 6 655470000 17281000 244770000 393420000 14595 1725 15327 64222;64223;64224;64225;64226;64227;64228;64229;64230;64231;64232;64233;64234 54186;54187;54188;54189;54190;54191;54192;54193;54194;54195;54196;54197;54198 54189 11 19939000 101470000 75511000 VLEEGSVEAR KSHLEVPLEENVNRRVLEEGSVEARTIEDA NVNRRVLEEGSVEARTIEDAIAVLSVAEEA R V L A R T 1 1 0 0 0 0 3 1 0 0 1 0 0 0 0 1 0 0 0 2 0 0 10 0 1087.551 Q96CT7 Q96CT7 136 145 CCDC124 Coiled-coil domain-containing protein 124 yes yes 2 0.00026954 120.12 By MS/MS By MS/MS 6 0.707 1 2 1 2 2 102230000 0 18209000 84018000 14596 1761 15328 64235;64236;64237;64238 54199;54200 54200 2 0 6216500 12808000 VLEENQEHYHIVQK LEKVFEELQATDKKRVLEENQEHYHIVQKF RVLEENQEHYHIVQKFLILGDIDGLMDEFS R V L Q K F 0 0 1 0 0 2 3 0 2 1 1 1 0 0 0 0 0 0 1 2 0 0 14 0 1764.8795 P57740 P57740 504 517 NUP107 Nuclear pore complex protein Nup107 yes yes 2;3;4 0.017148 70.977 By MS/MS 2 0 3 3 31439000 0 0 31439000 14597 956 15329 64239;64240;64241 54201;54202;54203 54203 1 0 0 7104500 VLEGMEVVR VKTAWLDGKHVVFGKVLEGMEVVRKVESTK HVVFGKVLEGMEVVRKVESTKTDSRDKPLK K V L V R K 0 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 0 0 3 0 0 9 0 1030.5481 P23284 P23284 172 180 PPIB Peptidyl-prolyl cis-trans isomerase B yes yes 2 0.00040447 120.46 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 373410000 0 100110000 273300000 14598 640 15330 64242;64243;64244;64245 54204;54205;54206;54207 54206 4 0 57022000 48272000 VLEGNEQFINAAK YKTRIQVRLGEHNIKVLEGNEQFINAAKII IKVLEGNEQFINAAKIIRHPKYNRDTLDND K V L A K I 2 0 2 0 0 1 2 1 0 1 1 1 0 1 0 0 0 0 0 1 0 0 13 0 1431.7358 P35030 P35030 137 149 PRSS3 Trypsin-3 yes yes 2 1.2894E-17 193.82 By MS/MS By MS/MS 5.64 2.84 1 2 1 1 2 1 1 2 2 1 5 9 167860000 14983000 152880000 0 14599 737 15331 64246;64247;64248;64249;64250;64251;64252;64253;64254;64255;64256;64257;64258;64259 54208;54209;54210;54211;54212;54213;54214;54215;54216;54217;54218;54219 54219 11 11763000 442590000 0 VLEIPYK YTSFHFASLEDVQAKVLEIPYKGKDLSMIV SLEDVQAKVLEIPYKGKDLSMIVLLPNEID K V L Y K G 0 0 0 0 0 0 1 0 0 1 1 1 0 0 1 0 0 0 1 1 0 0 7 0 860.50076 P29508;P48594 P29508 231 237 SERPINB3;SERPINB4 Serpin B3;Serpin B4 yes no 2 0.037224 86.086 By MS/MS 9.5 0.5 1 1 2 9825600 9825600 0 0 14600 700 15332 64260;64261 54220 54220 1 6149500 0 0 VLELAQLLDQIWR RGDGNVLIAVDTAGRVLELAQLLDQIWRTK GRVLELAQLLDQIWRTKDAGLGVYSLALLN R V L W R T 1 1 0 1 0 2 1 0 0 1 4 0 0 0 0 0 0 1 0 1 0 0 13 0 1595.9035 Q9P2I0 Q9P2I0 243 255 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 yes yes 2;3 0.00019701 121.83 By MS/MS 2.5 0.5 2 2 4 9454200 0 0 9454200 14601 2123 15333 64262;64263;64264;64265 54221;54222;54223 54221 3 0 0 2107700 VLELDPALAPVVSR AAVWNAQEAQADFAKVLELDPALAPVVSRE KVLELDPALAPVVSRELQALEARIRQKDEE K V L S R E 2 1 0 1 0 0 1 0 0 0 3 0 0 0 2 1 0 0 0 3 0 0 14 0 1477.8504 O00170 O00170 291 304 AIP AH receptor-interacting protein yes yes 2 0.0013558 107.4 By MS/MS 6 0 1 1 7176300 0 0 7176300 14602 109 15334 64266 54224 54224 1 0 0 1073600 VLELKEHK GFGFVLFKDAASVDKVLELKEHKLDGKLID DAASVDKVLELKEHKLDGKLIDPKRAKALK K V L H K L 0 0 0 0 0 0 2 0 1 0 2 2 0 0 0 0 0 0 0 1 0 0 8 1 994.58113 O14979 O14979 205 212 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 2 0.0636 95.909 By MS/MS 6 0 1 1 1497100 0 1497100 0 14603 157 15335 64267 54225 54225 1 0 518240 0 VLELKEHKLDGK GFGFVLFKDAASVDKVLELKEHKLDGKLID VDKVLELKEHKLDGKLIDPKRAKALKGKEP K V L G K L 0 0 0 1 0 0 2 1 1 0 3 3 0 0 0 0 0 0 0 1 0 0 12 2 1407.8086 O14979 O14979 205 216 HNRNPDL Heterogeneous nuclear ribonucleoprotein D-like yes yes 3 0.0010102 107.09 By MS/MS 6 0 1 1 10770000 0 10770000 0 14604 157 15336 64268 54226 54226 1 0 3728300 0 VLELVSITANK VDLRPKGLDGARAERVLELVSITANKNTCP RAERVLELVSITANKNTCPGDRSAITPGGL R V L N K N 1 0 1 0 0 0 1 0 0 1 2 1 0 0 0 1 1 0 0 2 0 0 11 0 1185.6969 P34897 P34897 399 409 SHMT2 Serine hydroxymethyltransferase, mitochondrial yes yes 1;2 0.00014613 117.53 By matching By MS/MS By MS/MS 4.25 0.433 3 1 1 2 1 61075000 2677500 50501000 7896400 14605 734 15337 64269;64270;64271;64272 54227;54228;54229 54229 2 2088900 15883000 1289700 VLENAEGAR TTNSCVAVMEGKQAKVLENAEGARTTPSVV EGKQAKVLENAEGARTTPSVVAFTADGERL K V L A R T 2 1 1 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 9 0 957.48796 P38646 P38646 77 85 HSPA9 Stress-70 protein, mitochondrial yes yes 2 8.3814E-35 162.5 By MS/MS By MS/MS 3 0 2 1 1 7601600 0 7601600 0 14606 774 15338 64273;64274 54230;54231 54231 2 0 3240600 0 VLENIELNKK LRLHSLLGDYYQAIKVLENIELNKKSMYSR YQAIKVLENIELNKKSMYSRVPECQVTTYY K V L K K S 0 0 2 0 0 0 2 0 0 1 2 2 0 0 0 0 0 0 0 1 0 0 10 1 1198.6921 Q9Y262 Q9Y262 293 302 EIF3L Eukaryotic translation initiation factor 3 subunit L yes yes 3 0.015267 65.5 By MS/MS 4 0 1 1 5978800 0 5978800 0 14607 2233 15339 64275 54232 54232 1 0 1984100 0 VLEPFLLR DHGKGRENGYQSLHKVLEPFLLRRVKKDVE GYQSLHKVLEPFLLRRVKKDVEKSLPAKVE K V L L R R 0 1 0 0 0 0 1 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 8 0 985.59605 O14647 O14647 692 699 CHD2 Chromodomain-helicase-DNA-binding protein 2 yes yes 2 0.00025613 135.35 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 13905000 487580 3851900 9565900 14608 142 15340 64276;64277;64278;64279 54233;54234 54234 2 487580 1882700 2081500 VLEPTLK ELSRRTHLPEVFLSKVLEPTLKSLGECCDV LPEVFLSKVLEPTLKSLGECCDVEDSTTCF K V L L K S 0 0 0 0 0 0 1 0 0 0 2 1 0 0 1 0 1 0 0 1 0 0 7 0 798.48511 P02774 P02774 364 370 GC Vitamin D-binding protein yes yes 2 0.03524 88.029 By MS/MS 9.5 0.5 1 1 2 17710000 17710000 0 0 14609 397 15341 64280;64281 54235 54235 1 15374000 0 0 VLEQLEDLDSR SCARLAEMRQKEIPRVLEQLEDLDSRVLYY EIPRVLEQLEDLDSRVLYYSATKNGILYRV R V L S R V 0 1 0 2 0 1 2 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 11 0 1315.662 P26358 P26358 910 920 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 0.00030495 132.88 By MS/MS 1.5 0.5 1 1 2 34358000 0 0 34358000 14610 667 15342 64282;64283 54236;54237 54236 2 0 0 7541500 VLEQLIVAHFPMQSR FFTSLTGGSLEELRRVLEQLIVAHFPMQSR VLEQLIVAHFPMQSREFPPGTPRFNNYVDC R V L S R E 1 1 0 0 0 2 1 0 1 1 2 0 1 1 1 1 0 0 0 2 0 0 15 0 1766.9502 P78527 P78527 1713 1727 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2;3 0.00010362 153.38 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 28649000 0 1659100 26990000 14611 1089 15343 64284;64285;64286;64287 54238;54239;54240 54240 3 0 810930 5835400 VLEQLTGQTPVFSK ICVGESGDRLTRAAKVLEQLTGQTPVFSKA KVLEQLTGQTPVFSKARYTVRSFGIRRNEK K V L S K A 0 0 0 0 0 2 1 1 0 0 2 1 0 1 1 1 2 0 0 2 0 0 14 0 1545.8403 P62913 P62913 39 52 RPL11 60S ribosomal protein L11 yes yes 2;3 3.6792E-25 203.83 By MS/MS By MS/MS By MS/MS 7.6 1.28 2 4 1 2 1 1 5 4 763420000 16643000 42357000 704420000 14612 1051 15344 64288;64289;64290;64291;64292;64293;64294;64295;64296;64297 54241;54242;54243;54244;54245;54246;54247;54248;54249 54249 9 35870000 61314000 126700000 VLEQPVVVQSVGTDGR SALAQARLLYGNDAKVLEQPVVVQSVGTDG LEQPVVVQSVGTDGRVFHFLVFQLNTTDLD K V L G R V 0 1 0 1 0 2 1 2 0 0 1 0 0 0 1 1 1 0 0 5 0 0 16 0 1681.8999 Q9BZE1 Q9BZE1 335 350 MRPL37 39S ribosomal protein L37, mitochondrial yes yes 2 9.4086E-06 155.02 By MS/MS 5 0 1 1 8177200 0 0 8177200 14613 1940 15345 64298 54250 54250 1 0 0 1140600 VLESLDR HLEKQVRLLNIRLNRVLESLDRSKDK____ LLNIRLNRVLESLDRSKDK___________ R V L D R S 0 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 1 0 0 7 0 830.44978 Q8WY22 Q8WY22 241 247 BRI3BP BRI3-binding protein yes no 2 0.042971 80.462 By MS/MS 7.5 0.5 1 1 2 5881000 0 0 5881000 14614 1699 15346 64299;64300 54251 54251 1 0 0 945150 VLETAEDIQER ______________________________ SGVKVLETAEDIQERRQQVLDRYHRFKELS K V L E R R 1 1 0 1 0 1 3 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1301.6463 Q13813 Q13813 8 18 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 6.3378E-10 171.56 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 94645000 0 35448000 59197000 14615 1268 15347 64301;64302;64303 54252;54253;54254 54253 3 0 17326000 12838000 VLETAEEIQER EQFPKETVVESSGPKVLETAEEIQERRQEV SGPKVLETAEEIQERRQEVLTRYQSFKERV K V L E R R 1 1 0 0 0 1 4 0 0 1 1 0 0 0 0 0 1 0 0 1 0 0 11 0 1315.662 P02549 P02549 17 27 SPTA1 Spectrin alpha chain, erythrocytic 1 yes yes 2 0.0040577 103.7 By MS/MS 1 0 1 1 3991800 0 3991800 0 14616 388 15348 64304 54255 54255 1 0 1951100 0 VLETFLAK KATSSHPNSTSLKAKVLETFLAKSRPELLE STSLKAKVLETFLAKSRPELLEYYIKVILD K V L A K S 1 0 0 0 0 0 1 0 0 0 2 1 0 1 0 0 1 0 0 1 0 0 8 0 919.53787 Q14258 Q14258 440 447 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 yes yes 2 0.023243 81.784 By MS/MS 3 0 1 1 16034000 0 16034000 0 14617 1297 15349 64305 54256 54256 1 0 6835400 0 VLETPQEIHTVSSEAVSLLEEVITPR LQMYYEGRFPCLEEKVLETPQEIHTVSSEA SSEAVSLLEEVITPRKDLPPLLLKLNERPA K V L P R K 1 1 0 0 0 1 5 0 1 2 3 0 0 0 2 3 3 0 0 4 0 0 26 0 2875.5179 Q9H0A0 Q9H0A0 663 688 NAT10 N-acetyltransferase 10 yes yes 3;4 1.7774E-33 170.53 By MS/MS 2.5 0.5 2 2 4 74120000 0 0 74120000 14618 1959 15350 64306;64307;64308;64309 54257;54258;54259 54258 3 0 0 16715000 VLEVGALQAVYELER TCPRAVIHLLLCQLRVLEVGALQAVYELER VLEVGALQAVYELERILNRFLEENPDPSAS R V L E R I 2 1 0 0 0 1 3 1 0 0 3 0 0 0 0 0 0 0 1 3 0 0 15 0 1687.9145 O95602 O95602 126 140 POLR1A DNA-directed RNA polymerase I subunit RPA1 yes yes 2 9.8089E-05 153.95 By MS/MS 1 0 1 1 4457200 0 0 4457200 14619 330 15351 64310 54260 54260 1 0 0 960380 VLEVQPEKLELIMDEMK TFQLYKSADHRTLDKVLEVQPEKLELIMDE EVQPEKLELIMDEMKQILTPMAQKEAVIKH K V L M K Q 0 0 0 1 0 1 4 0 0 1 3 2 2 0 1 0 0 0 0 2 0 0 17 1 2043.0632 Q15397 Q15397 294 310 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 3 0.0013029 74.772 By MS/MS By MS/MS 3 0 2 1 1 9109500 0 2283200 6826300 14620 1362 15352 64311;64312 54261;54262 54261 2 0 973310 1324000 VLFASQEIPASPFR TVKYVPPAAGRYTIKVLFASQEIPASPFRV KVLFASQEIPASPFRVKVDPSHDASKVKAE K V L F R V 2 1 0 0 0 1 1 0 0 1 1 0 0 2 2 2 0 0 0 1 0 0 14 0 1560.83 O75369 O75369 823 836 FLNB Filamin-B yes yes 2 8.57E-58 229.53 By MS/MS By MS/MS 4.6 4.03 2 1 1 1 3 2 13131000 3858000 9273100 0 14621 254 15353 64313;64314;64315;64316;64317 54263;54264;54265;54266;54267 54266 5 3501600 4469400 0 VLFDPFELDTSVTPGR ATTTEGLLIYSLDTRVLFDPFELDTSVTPG LFDPFELDTSVTPGRVREALRQQDFTRAIL R V L G R V 0 1 0 2 0 0 1 1 0 0 2 0 0 2 2 1 2 0 0 2 0 0 16 0 1791.9043 Q15269 Q15269 734 749 PWP2 Periodic tryptophan protein 2 homolog yes yes 2;3 1.0685E-12 180.2 By MS/MS By MS/MS 1.5 0.5 3 3 2 4 18825000 0 7693100 11132000 14622 1352 15354 64318;64319;64320;64321;64322;64323 54268;54269;54270;54271 54269 4 0 3493200 2409700 VLFLDHPK KGRILVGHALHNDLKVLFLDHPKKKIRDTQ ALHNDLKVLFLDHPKKKIRDTQKYKPFKSQ K V L P K K 0 0 0 1 0 0 0 0 1 0 2 1 0 1 1 0 0 0 0 1 0 0 8 0 967.5491 Q9GZR2 Q9GZR2 334 341 REXO4 RNA exonuclease 4 yes yes 2 0.014073 88.942 By matching By MS/MS By MS/MS 4 0 3 1 1 1 26266000 4116800 7609700 14539000 14623 1951 15355 64324;64325;64326 54272;54273 54273 2 3211800 2525400 2374800 VLFPGNSTQYNILEGLEK LIVWHPANPAEKIIRVLFPGNSTQYNILEG PGNSTQYNILEGLEKLKHLDFLKQPLATQK R V L E K L 0 0 2 0 0 1 2 2 0 1 3 1 0 1 1 1 1 0 1 1 0 0 18 0 2021.047 P46821 P46821 487 504 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 yes yes 2;3 1.6139E-09 158.58 By MS/MS By MS/MS 1.6 0.8 3 1 1 1 4 42560000 0 1771300 40789000 14624 834 15356 64327;64328;64329;64330;64331 54274;54275;54276 54275 3 0 865770 8828200 VLFRPSDTANSSNQDALSSNTSLK LRNHPSFYVFNHRGRVLFRPSDTANSSNQD NSSNQDALSSNTSLKLRKLESLRR______ R V L L K L 2 1 3 2 0 1 0 0 0 0 3 1 0 1 1 6 2 0 0 1 0 0 24 1 2551.2514 Q8N4V1 Q8N4V1 99 122 MMGT1 Membrane magnesium transporter 1 yes yes 3 0.0048535 43.156 By MS/MS 9 0 1 1 7361900 0 0 7361900 14625 1605 15357 64332 54277 54277 1 0 0 2351700 VLFSQAQVYELER DNAERPRARRRRKPRVLFSQAQVYELERRF PRVLFSQAQVYELERRFKQQRYLSAPERDQ R V L E R R 1 1 0 0 0 2 2 0 0 0 2 0 0 1 0 1 0 0 1 2 0 0 13 0 1580.8199 P52952;Q9H2Z4;P43699 P52952 143 155 NKX2-5;NKX2-4;NKX2-1 Homeobox protein Nkx-2.5;Homeobox protein Nkx-2.4;Homeobox protein Nkx-2.1 yes no 2 3.8652E-07 164.66 By MS/MS 6 0 1 1 5508700 0 0 5508700 14626 817 15358 64333 54278 54278 1 0 0 824170 VLFSSNGGVVK HLSNIPPSVSEEDLKVLFSSNGGVVKGFKF EDLKVLFSSNGGVVKGFKFFQKDRKMALIQ K V L V K G 0 0 1 0 0 0 0 2 0 0 1 1 0 1 0 2 0 0 0 3 0 0 11 0 1105.6132 P26599 P26599 472 482 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2 0.00017508 138.1 By MS/MS By MS/MS By MS/MS 4.36 1.82 1 1 1 3 2 1 2 1 5 5 557200000 17852000 334890000 204450000 14627 671 15359 64334;64335;64336;64337;64338;64339;64340;64341;64342;64343;64344 54279;54280;54281;54282;54283;54284;54285;54286 54285 8 13927000 113380000 34618000 VLFTCFK SIPSMVDGLKPGQRKVLFTCFKRNDKREVK GLKPGQRKVLFTCFKRNDKREVKVAQLAGS K V L F K R 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 1 0 0 1 0 0 7 0 913.47316 P11388;Q02880 P11388 729 735 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.042032 81.381 By MS/MS 1 0 1 1 14353000 0 0 14353000 14628 524;1150 15360 64345 54287 54287 1 0 0 3092600 VLFTGVVDAR SLRRTKLNQESTAPKVLFTGVVDARGERAV STAPKVLFTGVVDARGERAVLALGGSLAGS K V L A R G 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 3 0 0 10 0 1075.6026 Q14676 Q14676 1895 1904 MDC1 Mediator of DNA damage checkpoint protein 1 yes yes 2 0.017169 84.615 By MS/MS 2 1 1 1 2 24077000 0 0 24077000 14629 1310 15361 64346;64347 54288;54289 54289 2 0 0 5089100 VLFTSLADNK KERLQQILNFQNDLKVLFTSLADNKYIILQ QNDLKVLFTSLADNKYIILQKLANVFEQPV K V L N K Y 1 0 1 1 0 0 0 0 0 0 2 1 0 1 0 1 1 0 0 1 0 0 10 0 1106.5972 Q8NF91 Q8NF91 6495 6504 SYNE1 Nesprin-1 yes yes 2 0.044956 74.127 By MS/MS By matching 4.2 2.48 1 1 1 2 4 1 240040000 0 236380000 3661200 14630 1640 15362 64348;64349;64350;64351;64352 54290 54290 1 0 80205000 649660 VLGAFSDGLAHLDNLK DAVMGNPKVKAHGKKVLGAFSDGLAHLDNL LGAFSDGLAHLDNLKGTFATLSELHCDKLH K V L L K G 2 0 1 2 0 0 0 2 1 0 4 1 0 1 0 1 0 0 0 1 0 0 16 0 1668.8835 P68871;P02042 P68871 68 83 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 2;3 6.9427E-13 181.98 By MS/MS By matching 6.31 2.66 1 1 1 1 1 3 2 2 2 2 15 1 144300000 143120000 1186700 0 14631 1081 15363 64353;64354;64355;64356;64357;64358;64359;64360;64361;64362;64363;64364;64365;64366;64367;64368 54291;54292;54293;54294;54295;54296;54297;54298;54299;54300;54301 54299 11 113860000 410800 0 VLGEAMTGISQNAK MSYFGCLDSVMENSKVLGEAMTGISQNAKN KVLGEAMTGISQNAKNGNLPEFGDAISTAS K V L A K N 2 0 1 0 0 1 1 2 0 1 1 1 1 0 0 1 1 0 0 1 0 0 14 0 1417.7235 Q9Y490 Q9Y490 1402 1415 TLN1 Talin-1 yes yes 2 0.00042289 123.51 By MS/MS By MS/MS 1 0 2 1 1 7336500 0 2453100 4883400 14632 2284 15364 64369;64370 54302;54303 54303 2 0 1199100 1052200 VLGELWPLFGGR LICGPNGCGKSSLFRVLGELWPLFGGRLTK LFRVLGELWPLFGGRLTKPERGKLFYVPQR R V L G R L 0 1 0 0 0 0 1 3 0 0 3 0 0 1 1 0 0 1 0 1 0 0 12 0 1342.7398 P28288 P28288 485 496 ABCD3 ATP-binding cassette sub-family D member 3 yes yes 2 0.00026146 130.66 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 12663000 0 3346300 9316800 14633 688 15365 64371;64372;64373 54304;54305 54305 2 0 1182300 1807000 VLGENAIAVR PFAQSFDIYLTQILRVLGENAIAVRTKAMK TQILRVLGENAIAVRTKAMKCLSEVVAVDP R V L V R T 2 1 1 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 2 0 0 10 0 1040.5978 Q6KC79 Q6KC79 1780 1789 NIPBL Nipped-B-like protein yes yes 2 0.0019656 107.29 By MS/MS 1 0 1 1 24202000 0 0 24202000 14634 1480 15366 64374 54306 54306 1 0 0 5214800 VLGIQVDTDGSGR GRDRVGVGIRSSYIRVLGIQVDTDGSGRSF IRVLGIQVDTDGSGRSFAGAVSPQEEEEFR R V L G R S 0 1 0 2 0 1 0 3 0 1 1 0 0 0 0 1 1 0 0 2 0 0 13 0 1315.6732 P33992 P33992 296 308 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.0025387 107.24 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 13852000 0 2558100 11294000 14635 732 15367 64375;64376;64377 54307;54308 54307 2 0 1152000 2289200 VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK ERLLRRTQTKRSVYRVLGKPEPAAQPVPES EPEILPQAPANAHLKDLDEEIFDDDDFYHQ R V L L K D 5 0 1 0 0 2 4 2 1 1 4 2 0 0 8 1 0 0 0 2 0 0 33 1 3393.8296 Q9NY61 Q9NY61 419 451 AATF Protein AATF yes yes 4 0.0001304 43.15 By MS/MS By MS/MS 3 0 2 1 1 31300000 0 8634000 22666000 14636 2094 15368 64378;64379 54309;54310 54309 2 0 3680700 4396100 VLGLGLGCLR FVDRRFWSLEDGLNRVLGLGLGCLRLTEAD DGLNRVLGLGLGCLRLTEADYLSSHLTEGP R V L L R L 0 1 0 0 1 0 0 3 0 0 4 0 0 0 0 0 0 0 0 1 0 0 10 0 1056.6114 Q9BRJ7 Q9BRJ7 81 90 NUDT16L1 Protein syndesmos yes yes 2 4.5542E-11 170.06 By MS/MS 7 0 1 1 6846800 0 0 6846800 14637 1890 15369 64380 54311 54311 1 0 0 1214900 VLGLSQGSVSDMLSR KLAKNGICQRIFGEKVLGLSQGSVSDMLSR VLGLSQGSVSDMLSRPKPWSKLTQKGREPF K V L S R P 0 1 0 1 0 1 0 2 0 0 3 0 1 0 0 4 0 0 0 2 0 0 15 0 1547.7977 O14529;P39880 P39880 970 984 CUX2;CUX1 Homeobox protein cut-like 2;Homeobox protein cut-like 1 no no 2 0.0012321 96.334 By MS/MS 2 0 1 1 4050700 0 4050700 0 14638 781;135 15370 64381 54312 54312 1 0 1824100 0 VLGLVLLR IKPKNSKQAEREEKRVLGLVLLRGENLVSM AEREEKRVLGLVLLRGENLVSMTVEGPPPK R V L L R G 0 1 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 2 0 0 8 0 881.60622 P14678;P63162 P14678 66 73 SNRPB;SNRPN Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N yes no 2 8.1106E-09 166.13 By MS/MS By MS/MS By MS/MS 5.33 2.6 2 1 2 2 2 2 3 2 1 1 1 8 9 345260000 10464000 106600000 228190000 14639 563 15371 64382;64383;64384;64385;64386;64387;64388;64389;64390;64391;64392;64393;64394;64395;64396;64397;64398;64399 54313;54314;54315;54316;54317;54318;54319;54320;54321;54322;54323;54324;54325;54326;54327;54328;54329;54330;54331 54327 19 22553000 55652000 38748000 VLGMDPLPQMSQR AQFALRLLAFRQIHKVLGMDPLPQMSQRFN HKVLGMDPLPQMSQRFNIHNNRKRRRDSDG K V L Q R F 0 1 0 1 0 2 0 1 0 0 2 0 2 0 2 1 0 0 0 1 0 0 13 0 1470.7323 Q96KR1 Q96KR1 1029 1041 ZFR Zinc finger RNA-binding protein yes yes 2 0.0061494 97.214 By MS/MS 2 0 1 1 5251700 0 5251700 0 14640 1806 15372 64400 54332 54332 1 0 2364900 0 VLGMDPLPSK AQHALRLAAFGQLHKVLGMDPLPSKMPKKP GQLHKVLGMDPLPSKMPKKPKNENPVDYTV K V L S K M 0 0 0 1 0 0 0 1 0 0 2 1 1 0 2 1 0 0 0 1 0 0 10 0 1055.5685 Q12906 Q12906 333 342 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 0.002475 105.52 By MS/MS By MS/MS 3.4 2.87 1 2 1 1 3 2 228070000 0 156620000 71454000 14641 1211 15373 64401;64402;64403;64404;64405 54333;54334;54335;54336;54337 54337 5 0 72045000 15984000 VLGQPHHELDSK GFGFVTFADPASVDKVLGQPHHELDSKTID VDKVLGQPHHELDSKTIDPKVAFPRRAQPK K V L S K T 0 0 0 1 0 1 1 1 2 0 2 1 0 0 1 1 0 0 0 1 0 0 12 0 1358.6943 Q96DH6 Q96DH6 78 89 MSI2 RNA-binding protein Musashi homolog 2 yes yes 3 0.0034152 78.548 By MS/MS 6 0 1 1 0 0 0 0 14642 1766 15374 64406 54338 54338 1 0 0 0 VLGQSSSKPAAAATGPPPGNTSSTQK GQLKSPSLSQSQASRVLGQSSSKPAAAATG AATGPPPGNTSSTQKWKICTICNELFPENV R V L Q K W 4 0 1 0 0 2 0 3 0 0 1 2 0 0 4 5 3 0 0 1 0 0 26 1 2438.2401 Q9H2P0 Q9H2P0 420 445 ADNP Activity-dependent neuroprotector homeobox protein yes yes 3 0.00017615 55.588 By MS/MS 2 0 1 1 2793100 0 2793100 0 14643 1975 15375 64407 54339 54339 1 0 1257800 0 VLGTPVETIELTEDRR VELTKAGVLARYGVRVLGTPVETIELTEDR LGTPVETIELTEDRRAFAARMAEIGEHVAP R V L R R A 0 2 0 1 0 0 3 1 0 1 2 0 0 0 1 0 3 0 0 2 0 0 16 1 1826.9738 P27708 P27708 501 516 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 3 6.2015E-06 123.36 By MS/MS 1 0 1 1 9790200 0 0 9790200 14644 681 15376 64408 54340 54340 1 0 0 2109500 VLGTSPEAIDSAENR LPNNMAMALHRQQCRVLGTSPEAIDSAENR VLGTSPEAIDSAENRFKFSRLLDTIGISQP R V L N R F 2 1 1 1 0 0 2 1 0 1 1 0 0 0 1 2 1 0 0 1 0 0 15 0 1557.7635 P27708 P27708 1034 1048 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.00051511 109.39 By MS/MS 1.5 0.5 1 1 2 24735000 0 24735000 0 14645 681 15377 64409;64410 54341;54342 54341 2 0 11993000 0 VLGVPIIVQASQAEK DVSSVPLAIGLTGQRVLGVPIIVQASQAEK VLGVPIIVQASQAEKNRAAAMANNLQKGSA R V L E K N 2 0 0 0 0 2 1 1 0 2 1 1 0 0 1 1 0 0 0 3 0 0 15 0 1550.9032 Q14498 Q14498 218 232 RBM39 RNA-binding protein 39 yes yes 2;3 0.0002809 131.83 By MS/MS By MS/MS 4.23 1.62 1 1 2 3 3 2 1 7 6 167150000 0 75947000 91202000 14646 1302 15378 64411;64412;64413;64414;64415;64416;64417;64418;64419;64420;64421;64422;64423 54343;54344;54345;54346;54347;54348;54349;54350;54351 54347 9 0 24130000 14440000 VLHALFLFQEPR YQMVPPYEYQTAKSRVLHALFLFQEPRSIV KSRVLHALFLFQEPRSIVTSQKGSTNAAPQ R V L P R S 1 1 0 0 0 1 1 0 1 0 3 0 0 2 1 0 0 0 0 1 0 0 12 0 1468.8191 Q9UK61 Q9UK61 489 500 FAM208A Protein FAM208A yes yes 3 0.0050721 79.659 By MS/MS 2 0.816 1 1 1 3 6539000 0 0 6539000 14647 2175 15379 64424;64425;64426 54352;54353 54352 2 0 0 1411900 VLHALQEAAPEVVQPTTVQSSTIPSLLR LSSKGSFADLGLEPRVLHALQEAAPEVVQP QPTTVQSSTIPSLLRGRHVVCAAETGSGKT R V L L R G 3 1 0 0 0 3 2 0 1 1 4 0 0 0 3 3 3 0 0 4 0 0 28 0 2983.6342 Q9NUL7 Q9NUL7 137 164 DDX28 Probable ATP-dependent RNA helicase DDX28 yes yes 3 1.6604E-38 139.73 By MS/MS 4 0 1 1 4513100 0 4513100 0 14648 2061 15380 64427 54354 54354 1 0 1497700 0 VLHEAEGHIVTCETNTGEVYR ______________________________ GHIVTCETNTGEVYRGKLIEAEDNMNCQMS K V L Y R G 1 1 1 0 1 0 4 2 2 1 1 0 0 0 0 0 3 0 1 3 0 0 21 0 2413.1332 P62318 P62318 9 29 SNRPD3 Small nuclear ribonucleoprotein Sm D3 yes yes 2;3;4 1.1752E-46 209.45 By MS/MS By MS/MS 8.5 0.5 3 3 1 5 90392000 6756400 0 83635000 14649 1024 15381 64428;64429;64430;64431;64432;64433 54355;54356;54357;54358;54359 54357 5 3792400 0 17599000 VLHIPEFYVGSILR LKFQIERKDMLERRKVLHIPEFYVGSILRV KVLHIPEFYVGSILRVTTADPYASGKISQF K V L L R V 0 1 0 0 0 0 1 1 1 2 2 0 0 1 1 1 0 0 1 2 0 0 14 0 1641.9243 P49406 P49406 105 118 MRPL19 39S ribosomal protein L19, mitochondrial yes yes 3 0.0034211 75.102 By MS/MS 6 0 1 1 3902000 0 0 3902000 14650 855 15382 64434 54360 54360 1 0 0 583780 VLHNAQEVEKEPGQR EAFKASRNLQDVVERVLHNAQEVEKEPGQR VLHNAQEVEKEPGQRRALSVQASLMTPVQP R V L Q R R 1 1 1 0 0 2 3 1 1 0 1 1 0 0 1 0 0 0 0 2 0 0 15 1 1732.8856 P49916 P49916 454 468 LIG3 DNA ligase 3 yes yes 3;4 9.9594E-05 113.65 By MS/MS By MS/MS 2.45 0.988 2 4 3 2 3 8 31775000 0 7999200 23776000 14651 874 15383 64435;64436;64437;64438;64439;64440;64441;64442;64443;64444;64445 54361;54362;54363;54364;54365;54366;54367 54366 5 0 3575300 4973000 VLHVSENPVPLTVR GEEQDVGDAGRLLLRVLHVSENPVPLTVRV RVLHVSENPVPLTVRVSPEVRDVRPYIVGA R V L V R V 0 1 1 0 0 0 1 0 1 0 2 0 0 0 2 1 1 0 0 4 0 0 14 0 1558.8831 Q8N1G4 Q8N1G4 311 324 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2;3 0.00010137 155.97 By MS/MS By MS/MS 3 0 4 2 2 93120000 0 41310000 51810000 14652 1600 15384 64446;64447;64448;64449 54368;54369;54370;54371 54369 4 0 17610000 10049000 VLIDLIQR ELLRHDFVRRDRPLRVLIDLIQRTKDAVRE RRDRPLRVLIDLIQRTKDAVRELDNLQYRK R V L Q R T 0 1 0 1 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 1 0 0 8 0 968.60187 Q9H2K8 Q9H2K8 285 292 TAOK3 Serine/threonine-protein kinase TAO3 yes yes 2 0.0034193 105.12 By matching By MS/MS 1.5 0.5 1 1 1 1 6896100 3094900 0 3801200 14653 1974 15385 64450;64451 54372 54372 1 3094900 0 858990 VLIDSVLR FQAPVKIAVIFKQLRVLIDSVLRKKLENPK VIFKQLRVLIDSVLRKKLENPKMSLENDKI R V L L R K 0 1 0 1 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 2 0 0 8 0 913.55967 Q7Z478 Q7Z478 1334 1341 DHX29 ATP-dependent RNA helicase DHX29 yes yes 2 0.0061689 98.418 By MS/MS 2 0 1 1 2116700 0 2116700 0 14654 1532 15386 64452 54373 54373 1 0 953160 0 VLIEGSINSVR LLLQPVTISRNEKEKVLIEGSINSVRVSIA EKEKVLIEGSINSVRVSIAVKQADEIEKIL K V L V R V 0 1 1 0 0 0 1 1 0 2 1 0 0 0 0 2 0 0 0 2 0 0 11 0 1185.6717 P59998 P59998 61 71 ARPC4 Actin-related protein 2/3 complex subunit 4 yes yes 2 0.001351 110.76 By MS/MS By MS/MS 7.67 0.471 1 2 1 2 33084000 0 9188200 23896000 14655 960 15387 64453;64454;64455 54374;54375;54376 54376 3 0 4180300 3869500 VLIFSQMTK LLQKMLKNLKEGGHRVLIFSQMTKMLDLLE KEGGHRVLIFSQMTKMLDLLEDFLEHEGYK R V L T K M 0 0 0 0 0 1 0 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 9 0 1065.5893 Q14839;Q12873;Q8TDI0 Q14839 1069 1077 CHD4;CHD3;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.00060258 116.25 By matching By matching By MS/MS 1.25 0.433 3 1 1 1 2 70328000 1916500 16469000 51943000 14656 1321;1662;1205 15388 64456;64457;64458;64459 54377;54378 54378 2 1916500 8049700 11288000 VLIFSQMTR VLDKLLPKLKEQGSRVLIFSQMTRVLDILE KEQGSRVLIFSQMTRVLDILEDYCMWRNYE R V L T R V 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 1 1 0 0 1 0 0 9 0 1093.5954 O60264;P28370 O60264 502 510 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 4.1399E-07 155.75 By MS/MS By MS/MS 2 0.816 2 2 2 3 3 151220000 0 42177000 109050000 14657 223;693 15389 64460;64461;64462;64463;64464;64465 54379;54380;54381;54382;54383;54384 54382 6 0 19028000 24155000 VLIFSQMVR LLDKLLIRLRERGNRVLIFSQMVRMLDILA RERGNRVLIFSQMVRMLDILAEYLKYRQFP R V L V R M 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 1 0 0 0 2 0 0 9 0 1091.6161 O14647;Q8TD26;O14646;Q9HCK8;Q3L8U1;Q9P2D1 O14646 807 815 CHD2;CHD6;CHD1;CHD8;CHD9;CHD7 Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 8;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 7 no no 2 4.8709E-07 154.31 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 48113000 1357400 8636700 38119000 14658 141;142;2013 15390 64466;64467;64468;64469 54385;54386;54387 54386 3 1357400 4221500 8334300 VLIFTQMTR TLAVLLRQLKAEGHRVLIFTQMTRMLDVLE KAEGHRVLIFTQMTRMLDVLEQFLTYHGHL R V L T R M 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 2 0 0 1 0 0 9 0 1107.6111 Q6ZRS2 Q6ZRS2 2062 2070 SRCAP Helicase SRCAP yes yes 2 0.00072238 113.71 By MS/MS 1 0 1 1 3624300 0 0 3624300 14659 1509 15391 64470 54388 54388 1 0 0 780920 VLIGENEK SKKQGKQEAADAALRVLIGENEKAERMGFT AADAALRVLIGENEKAERMGFTEVTPVTGA R V L E K A 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 8 0 900.49165 P55265 P55265 791 798 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 0.044768 74.255 By matching By MS/MS 2.5 0.5 1 1 1 1 31398000 0 7606200 23792000 14660 941 15392 64471;64472 54389 54389 1 0 3425200 4614500 VLIGENEKAER SKKQGKQEAADAALRVLIGENEKAERMGFT AALRVLIGENEKAERMGFTEVTPVTGASLR R V L E R M 1 1 1 0 0 0 3 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 11 1 1256.6725 P55265 P55265 791 801 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 3 7.512E-05 122.51 By MS/MS 3 0.816 1 1 1 3 16025000 0 16025000 0 14661 941 15393 64473;64474;64475 54390 54390 1 0 7126100 0 VLIPVFALGR DFLKKVHETVERGGKVLIPVFALGRAQELC ERGGKVLIPVFALGRAQELCILLETFWERM K V L G R A 1 1 0 0 0 0 0 1 0 1 2 0 0 1 1 0 0 0 0 2 0 0 10 0 1083.6805 Q5TA45 Q5TA45 235 244 CPSF3L Integrator complex subunit 11 yes yes 2 0.0050612 97.798 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 4882700 0 2073900 2808800 14662 1457 15394 64476;64477;64478 54391;54392 54391 2 0 738380 544780 VLIQVGYEPLPPTIGR GSGLTILSQPLMYVKVLIQVGYEPLPPTIG LIQVGYEPLPPTIGRNIFGRQVCQLPGLFS K V L G R N 0 1 0 0 0 1 1 2 0 2 2 0 0 0 3 0 1 0 1 2 0 0 16 0 1750.9982 Q9Y6C9 Q9Y6C9 26 41 MTCH2 Mitochondrial carrier homolog 2 yes yes 2 4.2931E-05 117.25 By MS/MS 6 0 1 1 3947600 0 0 3947600 14663 2311 15395 64479 54393 54393 1 0 0 590610 VLISNLLDLLTEVGVSGQGR GKEGAIIVDPARELKVLISNLLDLLTEVGV LLDLLTEVGVSGQGRDNALTLLIKAVPRKS K V L G R D 0 1 1 1 0 1 1 3 0 1 5 0 0 0 0 2 1 0 0 3 0 0 20 0 2082.1685 Q9H3U1 Q9H3U1 293 312 UNC45A Protein unc-45 homolog A yes yes 3 0.00010221 75.215 By MS/MS 2.5 0.5 1 1 2 3446500 0 0 3446500 14664 1980 15396 64480;64481 54394 54394 1 0 0 770330 VLISSLQDCLHGIESK SLIKQSKVSADDRCKVLISSLQDCLHGIES LISSLQDCLHGIESKSYGSGSRRERSRERD K V L S K S 0 0 0 1 1 1 1 1 1 2 3 1 0 0 0 3 0 0 0 1 0 0 16 0 1797.9295 Q16630 Q16630 468 483 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 yes yes 2 0.004795 81.565 By MS/MS 3 0 1 1 3400100 0 0 3400100 14665 1393 15397 64482 54395 54395 1 0 0 659460 VLISTDVWAR ERESIMKEFRSGASRVLISTDVWARGLDVP SGASRVLISTDVWARGLDVPQVSLIINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 1 1 1 0 2 0 0 10 0 1158.6397 P38919 P38919 330 339 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 2 0.00029612 123.72 By matching By MS/MS By MS/MS 5.56 1.26 2 3 2 1 1 1 3 5 262280000 14867000 104280000 143140000 14666 775 15398 64483;64484;64485;64486;64487;64488;64489;64490;64491 54396;54397;54398;54399;54400;54401;54402;54403 54400 8 11910000 27563000 21042000 VLITTDLLAR ERDVIMREFRSGSSRVLITTDLLARGIDVQ SGSSRVLITTDLLARGIDVQQVSLVINYDL R V L A R G 1 1 0 1 0 0 0 0 0 1 3 0 0 0 0 0 2 0 0 1 0 0 10 0 1113.6758 P60842;Q14240 P60842 325 334 EIF4A1;EIF4A2 Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed no no 2 0.00030848 123.98 By MS/MS By MS/MS By MS/MS 6.62 2.02 2 3 2 2 1 1 2 2 4 7 388680000 15325000 194920000 178440000 14667 967;1294 15399 64492;64493;64494;64495;64496;64497;64498;64499;64500;64501;64502;64503;64504 54404;54405;54406;54407;54408;54409;54410;54411;54412;54413 54412 10 12256000 78455000 44838000 VLITTLITAGR GEYVFPAKKKLQEYRVLITTLITAGRLVSA QEYRVLITTLITAGRLVSAQFPIDHFTHIF R V L G R L 1 1 0 0 0 0 0 1 0 2 2 0 0 0 0 0 3 0 0 1 0 0 11 0 1156.718 Q9HCE1 Q9HCE1 618 628 MOV10 Putative helicase MOV-10 yes yes 2 0.0010715 113.62 By matching By MS/MS By matching 2.33 0.471 2 1 1 1 1 6186900 523810 4215500 1447500 14668 2011 15400 64505;64506;64507 54414 54414 1 631130 1898300 280750 VLKPIQLTDPGK PGGGGEVVFSCPVRKVLKPIQLTDPGKIKR VRKVLKPIQLTDPGKIKRIRGMAYSVRVSP K V L G K I 0 0 0 1 0 1 0 1 0 1 2 2 0 0 2 0 1 0 0 1 0 0 12 1 1307.7813 Q9Y2P8 Q9Y2P8 176 187 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 3 0.0028224 90.697 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 26169000 0 4087900 22082000 14669 2243 15401 64508;64509;64510;64511 54415;54416;54417 54415 3 0 1415100 3228300 VLKQVHPDTGISSK RKRSRKESYSIYVYKVLKQVHPDTGISSKA KVLKQVHPDTGISSKAMGIMNSFVNDIFER K V L S K A 0 0 0 1 0 1 0 1 1 1 1 2 0 0 1 2 1 0 0 2 0 0 14 1 1507.8358 P06899;Q16778;P33778;P23527;Q96A08;P57053;O60814;Q8N257 P06899 45 58 HIST1H2BJ;HIST2H2BE;HIST1H2BB;HIST1H2BO;HIST1H2BA;H2BFS;HIST1H2BK;HIST3H2BB Histone H2B type 1-J;Histone H2B type 2-E;Histone H2B type 1-B;Histone H2B type 1-O;Histone H2B type 1-A;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 3-B no no 2;3 0.00011404 138.99 By MS/MS By MS/MS 7.36 1.54 1 1 1 4 4 2 1 4 10 563520000 0 57870000 505650000 14670 451;644;953;1601 15402 64512;64513;64514;64515;64516;64517;64518;64519;64520;64521;64522;64523;64524;64525 54418;54419;54420;54421;54422;54423;54424;54425;54426;54427 54425 10 0 29460000 87812000 VLLASSFVPIYAGLK NHLVSTFSSREDLIKVLLASSFVPIYAGLK VLLASSFVPIYAGLKLVEYKGQKWVDGGLT K V L L K L 2 0 0 0 0 0 0 1 0 1 3 1 0 1 1 2 0 0 1 2 0 0 15 0 1576.9229 P41247 P41247 138 152 PNPLA4 Patatin-like phospholipase domain-containing protein 4 yes yes 2 0.0046643 84.268 By MS/MS 7 0 1 1 1209900 0 0 1209900 14671 795 15403 64526 54428 54428 1 0 0 214690 VLLATLSIPITPER RKNLTQDEMQRMSTRVLLATLSIPITPERT RVLLATLSIPITPERTDIARLLDMDGIIVE R V L E R T 1 1 0 0 0 0 1 0 0 2 3 0 0 0 2 1 2 0 0 1 0 0 14 0 1521.913 Q14152 Q14152 322 335 EIF3A Eukaryotic translation initiation factor 3 subunit A yes yes 2 0.00051634 143.96 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 9214000 0 3404200 5809800 14672 1286 15404 64527;64528;64529;64530 54429;54430;54431 54429 3 0 1568000 1276000 VLLDGVQNPR IPIEDGSGEVVLSRKVLLDGVQNPRAEDLV VLSRKVLLDGVQNPRAEDLVGKSLYVSATV K V L P R A 0 1 1 1 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 10 0 1109.6193 P01024 P01024 306 315 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.00020879 141.52 By MS/MS 9.5 0.5 1 1 2 14203000 14203000 0 0 14673 371 15405 64531;64532 54432;54433 54432 2 12231000 0 0 VLLDIFTGVR GEKRKAADETLCQTKVLLDIFTGVRLYLPP LCQTKVLLDIFTGVRLYLPPSTPDFSRLRR K V L V R L 0 1 0 1 0 0 0 1 0 1 2 0 0 1 0 0 1 0 0 2 0 0 10 0 1131.6652 P49916 P49916 933 942 LIG3 DNA ligase 3 yes yes 2 2.327E-22 190.26 By MS/MS 3.75 3.11 1 1 1 1 4 16879000 0 0 16879000 14674 874 15406 64533;64534;64535;64536 54434;54435;54436;54437 54435 4 0 0 3964500 VLLDNVENK TLDSFMQHDVQELCRVLLDNVENKMKGTCV VQELCRVLLDNVENKMKGTCVEGTIPKLFR R V L N K M 0 0 2 1 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 2 0 0 9 0 1042.5659 Q93009 Q93009 302 310 USP7 Ubiquitin carboxyl-terminal hydrolase 7 yes yes 2 0.02234 80.684 By MS/MS 2 0 1 1 5545300 0 5545300 0 14675 1738 15407 64537 54438 54438 1 0 2497100 0 VLLESEQFLTELTR ______________________________ MVLLESEQFLTELTRLFQKCRTSGSVYITL M V L T R L 0 1 0 0 0 1 3 0 0 0 4 0 0 1 0 1 2 0 0 1 0 0 14 0 1676.8985 P37108 P37108 2 15 SRP14 Signal recognition particle 14 kDa protein yes yes 2 1.3318E-24 196.48 By matching By MS/MS By MS/MS 8 0.632 1 3 1 1 2 2 126760000 4753000 12801000 109210000 14676 766 15408 64538;64539;64540;64541;64542 54439;54440;54441;54442 54441 4 4080600 5906000 17073000 VLLGETGK RAYQKQPTIFQNKKRVLLGETGKEKLPRYY IFQNKKRVLLGETGKEKLPRYYKNIGLGFK R V L G K E 0 0 0 0 0 0 1 2 0 0 2 1 0 0 0 0 1 0 0 1 0 0 8 0 815.47527 P62280 P62280 23 30 RPS11 40S ribosomal protein S11 yes yes 2 0.0013404 117.16 By MS/MS By MS/MS By MS/MS 6.67 0.943 1 1 3 1 1 3 2 252200000 10833000 52468000 188900000 14677 1017 15409 64543;64544;64545;64546;64547;64548 54443;54444;54445 54445 3 23348000 29802000 33400000 VLLGETGKEK RAYQKQPTIFQNKKRVLLGETGKEKLPRYY QNKKRVLLGETGKEKLPRYYKNIGLGFKTP R V L E K L 0 0 0 0 0 0 2 2 0 0 2 2 0 0 0 0 1 0 0 1 0 0 10 1 1072.6128 P62280 P62280 23 32 RPS11 40S ribosomal protein S11 yes yes 2 0.053951 93.649 By matching By MS/MS 7 0 2 1 1 42339000 0 10783000 31556000 14678 1017 15410 64549;64550 54446 54446 1 0 6191400 5599500 VLLGETGKEKLPR RAYQKQPTIFQNKKRVLLGETGKEKLPRYY KRVLLGETGKEKLPRYYKNIGLGFKTPKEA R V L P R Y 0 1 0 0 0 0 2 2 0 0 3 2 0 0 1 0 1 0 0 1 0 0 13 2 1438.8508 P62280 P62280 23 35 RPS11 40S ribosomal protein S11 yes yes 3 0.0027495 89.629 By MS/MS 7 0 1 1 6716500 0 6716500 0 14679 1017 15411 64551 54447 54447 1 0 3856700 0 VLLGPLSPYTIEFLR LALLLMTLGQQDVSKVLLGPLSPYTIEFLR VLLGPLSPYTIEFLRHLKSFFQIMFKIETK K V L L R H 0 1 0 0 0 0 1 1 0 1 4 0 0 1 2 1 1 0 1 1 0 0 15 0 1716.9814 Q9Y2P8 Q9Y2P8 315 329 RCL1 RNA 3-terminal phosphate cyclase-like protein yes yes 2 0.00028933 124.42 By MS/MS By matching 6.5 0.5 1 1 1 1 2589700 0 2110400 479250 14680 2243 15412 64552;64553 54448 54448 1 0 730550 85039 VLLGVGDPK LRLLLETHLPSKKKKVLLGVGDPKIGAAIQ PSKKKKVLLGVGDPKIGAAIQEELGYNCQT K V L P K I 0 0 0 1 0 0 0 2 0 0 2 1 0 0 1 0 0 0 0 2 0 0 9 0 896.53312 O00567 O00567 91 99 NOP56 Nucleolar protein 56 yes yes 2 0.040324 74.301 By matching By MS/MS By matching 3.33 0.471 2 1 1 1 1 47778000 4453900 34544000 8780100 14681 130 15413 64554;64555;64556 54449 54449 1 5138800 14726000 1434100 VLLLSSPGLEELYR AEPITADSDPAYSSKVLLLSSPGLEELYRC KVLLLSSPGLEELYRCCMLFVDDMAEPRET K V L Y R C 0 1 0 0 0 0 2 1 0 0 5 0 0 0 1 2 0 0 1 1 0 0 14 0 1587.8872 Q8N163 Q8N163 310 323 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 0.00041101 125.22 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 18961000 0 2079800 16881000 14682 1598 15414 64557;64558;64559;64560 54450;54451 54450 2 0 936560 3718600 VLLPEGGITAIVEFLEPLEAR AQLQETFGHFGSLGRVLLPEGGITAIVEFL GITAIVEFLEPLEARKAFRHLAYSKFHHVP R V L A R K 2 1 0 0 0 0 4 2 0 2 4 0 0 1 2 0 1 0 0 2 0 0 21 0 2265.262 Q9Y4C8 Q9Y4C8 616 636 RBM19 Probable RNA-binding protein 19 yes yes 3 0.00087484 62.966 By MS/MS 2 0 1 1 965530 0 0 965530 14683 2286 15415 64561 54452 54452 1 0 0 218190 VLLPEYGGTK KGGEIQPVSVKVGDKVLLPEYGGTKVVLDD KVGDKVLLPEYGGTKVVLDDKDYFLFRDGD K V L T K V 0 0 0 0 0 0 1 2 0 0 2 1 0 0 1 0 1 0 1 1 0 0 10 0 1075.5914 P61604 P61604 71 80 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 2 0.036878 76.221 By matching By MS/MS 10 0 2 1 1 17477000 6681800 0 10796000 14684 996 15416 64562;64563 54453 54453 1 12173000 0 23611000 VLLPFTR AAGPSAAAAKLNIPKVLLPFTRATRVNFTL AAKLNIPKVLLPFTRATRVNFTLEASEGCY K V L T R A 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 0 1 0 0 1 0 0 7 0 844.51707 Q8TEM1 Q8TEM1 33 39 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0072048 124.89 By MS/MS 1 0 1 1 8469700 0 0 8469700 14685 1666 15417 64564 54454 54454 1 0 0 1824900 VLLQASQDENFGNTTPR AEVTRTARKQSAQKRVLLQASQDENFGNTT LQASQDENFGNTTPRNQVIPRTPSSFRQPF R V L P R N 1 1 2 1 0 2 1 1 0 0 2 0 0 1 1 1 2 0 0 1 0 0 17 0 1888.9279 P57740 P57740 32 48 NUP107 Nuclear pore complex protein Nup107 yes yes 2 2.9085E-111 269.72 By MS/MS 2 0 1 1 11218000 0 0 11218000 14686 956 15418 64565 54455 54455 1 0 0 2535000 VLLQEEGTR EKAIKEKEYEIERLRVLLQEEGTRKREYEN EIERLRVLLQEEGTRKREYENELAKVRNHY R V L T R K 0 1 0 0 0 1 2 1 0 0 2 0 0 0 0 0 1 0 0 1 0 0 9 0 1043.5611 P15924 P15924 1176 1184 DSP Desmoplakin yes yes 2 5.4204E-05 147.52 By MS/MS By MS/MS 1 0 2 1 1 55272000 0 25496000 29776000 14687 572 15419 64566;64567 54456;54457 54457 2 0 12462000 6415700 VLLSALER LLSEEVELYGETKAKVLLSALERLKHRPDG YGETKAKVLLSALERLKHRPDGKYVVVTGI K V L E R L 1 1 0 0 0 0 1 0 0 0 3 0 0 0 0 1 0 0 0 1 0 0 8 0 899.54402 P11586 P11586 355 362 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 0.0036394 104.37 By matching By MS/MS 2.33 0.471 2 1 1 2 7944300 935680 0 7008600 14688 528 15420 64568;64569;64570 54458 54458 1 1127400 0 1522300 VLLTTQGVDMISK TQTPSWLGLPNNAERVLLTTQGVDMISKML ERVLLTTQGVDMISKMLKMQMLEDEDDLAY R V L S K M 0 0 0 1 0 1 0 1 0 1 2 1 1 0 0 1 2 0 0 2 0 0 13 0 1403.7694 Q14204 Q14204 4330 4342 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.022093 77.64 By MS/MS By MS/MS 1 0 2 1 1 11542000 0 6264600 5277300 14689 1292 15421 64571;64572 54459;54460 54460 2 0 3062000 1137100 VLLVLELQGLQK GPDSLTVHLIHEVTKVLLVLELQGLQKNMT VTKVLLVLELQGLQKNMTRFRIDELEPRRP K V L Q K N 0 0 0 0 0 2 1 1 0 0 5 1 0 0 0 0 0 0 0 2 0 0 12 0 1351.8439 Q14697 Q14697 85 96 GANAB Neutral alpha-glucosidase AB yes yes 2 9.4136E-05 113.18 By MS/MS 2 0 1 1 3571500 0 0 3571500 14690 1317 15422 64573 54461 54461 0 0 0 807090 VLLYLLSPR ISSLPSIVNDKYGRKVLLYLLSPRDPAHTV DKYGRKVLLYLLSPRDPAHTVREIIEVLQK K V L P R D 0 1 0 0 0 0 0 0 0 0 4 0 0 0 1 1 0 0 1 1 0 0 9 0 1072.6645 Q15397 Q15397 441 449 KIAA0020 Pumilio domain-containing protein KIAA0020 yes yes 2 7.4516E-05 145.34 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 20977000 0 4804600 16172000 14691 1362 15423 64574;64575;64576 54462;54463 54463 2 0 2055600 3136600 VLMTQQPR DKYSRHRITIKKRFKVLMTQQPRPVL____ TIKKRFKVLMTQQPRPVL____________ K V L P R P 0 1 0 0 0 2 0 0 0 0 1 0 1 0 1 0 1 0 0 1 0 0 8 0 971.52224 Q9NPE3 Q9NPE3 54 61 NOP10 H/ACA ribonucleoprotein complex subunit 3 yes yes 2 8.2102E-06 154.09 By MS/MS 9.5 0.5 1 1 2 30988000 0 0 30988000 14692 2026 15424 64577;64578 54464;54465 54465 1 0 0 63535000 VLNEAVGALMYHTITLTR VAFCDAQSTQEIHEKVLNEAVGALMYHTIT EAVGALMYHTITLTREDLEKFKALRIIVRI K V L T R E 2 1 1 0 0 0 1 1 1 1 3 0 1 0 0 0 3 0 1 2 0 0 18 0 2001.0717 Q13363 Q13363 66 83 CTBP1 C-terminal-binding protein 1 yes yes 3 1.1031E-05 99.663 By MS/MS 5 0 1 1 3903700 0 0 3903700 14693 1241 15425 64579 54466 54466 1 0 0 544500 VLNEAVGAMMYHTITLTR VAFCDAQSTQEIHEKVLNEAVGAMMYHTIT EAVGAMMYHTITLTREDLEKFKALRVIVRI K V L T R E 2 1 1 0 0 0 1 1 1 1 2 0 2 0 0 0 3 0 1 2 0 0 18 0 2019.0282 P56545 P56545 72 89 CTBP2 C-terminal-binding protein 2 yes yes 3 0.00093436 70.335 By MS/MS 5 0 1 1 7168800 0 0 7168800 14694 952 15426 64580 54467 54467 1 0 0 999910 VLNELTQLK KAEDALSEMKSQYSKVLNELTQLKQLVDAQ KSQYSKVLNELTQLKQLVDAQKENSVSITE K V L L K Q 0 0 1 0 0 1 1 0 0 0 3 1 0 0 0 0 1 0 0 1 0 0 9 0 1056.6179 Q9P0K7 Q9P0K7 709 717 RAI14 Ankycorbin yes yes 2 0.00080524 111.95 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 1 3 28799000 945740 8827000 19026000 14695 2115 15427 64581;64582;64583;64584;64585 54468;54469 54469 2 945740 3974900 4197100 VLNGYSLQHK DEAHRLKNNQSKFFRVLNGYSLQHKLLLTG SKFFRVLNGYSLQHKLLLTGTPLQNNLEEL R V L H K L 0 0 1 0 0 1 0 1 1 0 2 1 0 0 0 1 0 0 1 1 0 0 10 0 1157.6193 Q14839 Q14839 888 897 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00042276 126.41 By MS/MS By MS/MS 1 0 2 1 1 14985000 0 4459600 10525000 14696 1321 15428 64586;64587 54470;54471 54471 2 0 2179800 2267900 VLNILEK AMGIMDKLSTDKTVKVLNILEKNIQDGSKL LSTDKTVKVLNILEKNIQDGSKLSTLLNHN K V L E K N 0 0 1 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 0 1 0 0 7 0 827.51165 Q6KC79 Q6KC79 1265 1271 NIPBL Nipped-B-like protein yes yes 2 0.038064 85.265 By matching By MS/MS By MS/MS 1 0 3 1 1 1 17825000 701760 5105300 12018000 14697 1480 15429 64588;64589;64590 54472;54473 54473 2 701760 2495400 2589400 VLNLGQALER NILIVLTKILPWYPKVLNLGQALERRVHKI PWYPKVLNLGQALERRVHKICQEEKEKRPD K V L E R R 1 1 1 0 0 1 1 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 10 0 1111.635 Q8NI27 Q8NI27 1137 1146 THOC2 THO complex subunit 2 yes yes 2 0.00037934 138.06 By matching By MS/MS 1 0 2 1 1 26629000 2311500 0 24317000 14698 1647 15430 64591;64592 54474 54474 1 2311500 0 5239500 VLNLIQSWADAFR TILPKNNPPTIVHDKVLNLIQSWADAFRSS DKVLNLIQSWADAFRSSPDLTGVVTIYEDL K V L F R S 2 1 1 1 0 1 0 0 0 1 2 0 0 1 0 1 0 1 0 1 0 0 13 0 1531.8147 O60784 O60784 117 129 TOM1 Target of Myb protein 1 yes yes 2 4.4943E-05 158.79 By MS/MS 4 0 1 1 3006000 0 0 3006000 14699 233 15431 64593 54475 54475 1 0 0 490980 VLNLPPNTIMEYK SDQATTARIRDTLRRVLNLPPNTIMEYKTH RRVLNLPPNTIMEYKTHTDSIKMPGRLGPQ R V L Y K T 0 0 2 0 0 0 1 0 0 1 2 1 1 0 2 0 1 0 1 1 0 0 13 0 1530.8116 O60573 O60573 203 215 EIF4E2 Eukaryotic translation initiation factor 4E type 2 yes yes 2 0.014966 83 By MS/MS 6 0 1 1 3023200 0 0 3023200 14700 229 15432 64594 54476 54476 1 0 0 452310 VLNLYTPVNEFEER ICSMCNALTTAQIVKVLNLYTPVNEFEERV KVLNLYTPVNEFEERVSVSFIRTIQMRLRD K V L E R V 0 1 2 0 0 0 3 0 0 0 2 0 0 1 1 0 1 0 1 2 0 0 14 0 1721.8625 Q9Y4I1 Q9Y4I1 1782 1795 MYO5A Unconventional myosin-Va yes yes 2 0.032246 68.355 By MS/MS 1 0 1 1 1662600 0 1662600 0 14701 2287 15433 64595 54477 54477 1 0 812630 0 VLNMKPPEILSMIEEAAGTR VNNPHFLIMQGRITKVLNMKPPEILSMIEE PPEILSMIEEAAGTRMYEYKKIAAQKTIEK K V L T R M 2 1 1 0 0 0 3 1 0 2 2 1 2 0 2 1 1 0 0 1 0 0 20 1 2198.1439 O95347 O95347 153 172 SMC2 Structural maintenance of chromosomes protein 2 yes yes 3 3.3224E-14 149.94 By MS/MS By MS/MS 2 0 2 1 1 4466700 0 1181500 3285200 14702 321 15434 64596;64597 54478;54479 54479 2 0 532030 742390 VLNMMPEEK AFVSTAKCQLLFALKVLNMMPEEKLVEALA LLFALKVLNMMPEEKLVEALAAATEKQKKA K V L E K L 0 0 1 0 0 0 2 0 0 0 1 1 2 0 1 0 0 0 0 1 0 0 9 0 1089.5199 Q9BRJ7 Q9BRJ7 179 187 NUDT16L1 Protein syndesmos yes yes 2 0.023045 80.219 By MS/MS By matching 7 0 2 1 1 13479000 0 2730900 10749000 14703 1890 15435 64598;64599 54480 54480 1 0 1568100 1907300 VLNQELR CIQANYSLMENGKIKVLNQELRADGTVNQI LMENGKIKVLNQELRADGTVNQIEGEATPV K V L L R A 0 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 7 0 870.49232 P05090 P05090 76 82 APOD Apolipoprotein D yes yes 2 0.015134 111.28 By MS/MS By matching 5.67 2.75 1 1 1 1 1 1 1 2 8 1 78897000 78670000 0 227180 14704 423 15436 64600;64601;64602;64603;64604;64605;64606;64607;64608 54481;54482;54483;54484 54484 4 85238000 0 72572 VLNSYWVGEDSTYK SVAEERAGRHCGALRVLNSYWVGEDSTYKF RVLNSYWVGEDSTYKFFEVILIDPFHKAIR R V L Y K F 0 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 1 1 2 2 0 0 14 0 1659.7781 P61313 P61313 115 128 RPL15 60S ribosomal protein L15 yes yes 2 1.2823E-11 181.68 By matching By MS/MS By MS/MS 6.31 2.49 1 1 1 1 2 3 2 2 1 4 8 423350000 2095300 24298000 396950000 14705 991 15437 64609;64610;64611;64612;64613;64614;64615;64616;64617;64618;64619;64620;64621 54485;54486;54487;54488;54489;54490;54491;54492;54493 54487 9 4515900 16745000 78169000 VLNTNIDGR ______________________________ FQHILRVLNTNIDGRRKIAFAITAIKGVGR R V L G R R 0 1 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 9 0 1000.5302 P62269 P62269 15 23 RPS18 40S ribosomal protein S18 yes yes 2 4.1399E-07 155.75 By MS/MS By MS/MS 7.5 0.957 1 2 2 1 3 3 181070000 0 76501000 104570000 14706 1014 15438 64622;64623;64624;64625;64626;64627 54494;54495;54496;54497;54498;54499 54495 6 0 35681000 17893000 VLNTNIDGRR ______________________________ QHILRVLNTNIDGRRKIAFAITAIKGVGRR R V L R R K 0 2 2 1 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 10 1 1156.6313 P62269 P62269 15 24 RPS18 40S ribosomal protein S18 yes yes 2 0.0004758 137.06 By MS/MS 7 0.816 1 1 1 3 9394800 0 9394800 0 14707 1014 15439 64628;64629;64630 54500;54501 54501 2 0 4601600 0 VLNVTNLEFSDTR LKEFVDYYYSTNRKRVLNVTNLEFSDTRMS KRVLNVTNLEFSDTRMSSFVEPPDIVKKLS R V L T R M 0 1 2 1 0 0 1 0 0 0 2 0 0 1 0 1 2 0 0 2 0 0 13 0 1506.7678 O75151 O75151 189 201 PHF2 Lysine-specific demethylase PHF2 yes yes 2 1.24E-24 199.68 By matching By MS/MS 1.5 0.5 1 1 1 1 17857000 0 1152200 16705000 14708 243 15440 64631;64632 54502 54502 1 0 563180 3775000 VLPAQATEYAFAFIQVPQDDDAR PSTRLGTLSPAFSTRVLPAQATEYAFAFIQ YAFAFIQVPQDDDARTDAVDSVVRDIQNTQ R V L A R T 5 1 0 3 0 3 1 0 0 1 1 0 0 2 2 0 1 0 1 2 0 0 23 0 2564.2547 Q7KZF4 Q7KZF4 788 810 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2;3 4.9884E-20 133.71 By MS/MS 2 0 2 2 3801100 0 0 3801100 14709 1518 15441 64633;64634 54503;54504 54504 2 0 0 858970 VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR PSTRLGTLSPAFSTRVLPAQATEYAFAFIQ QDDDARTDAVDSVVRDIQNTQCLLNVEHLS R V L V R D 6 2 0 5 0 3 1 0 0 1 1 0 0 2 2 1 2 0 1 5 0 0 32 1 3506.7318 Q7KZF4 Q7KZF4 788 819 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3;4 2.4767E-55 169.57 By MS/MS 2 0 2 2 11496000 0 0 11496000 14710 1518 15442 64635;64636 54505;54506 54506 2 0 0 2597900 VLPGMHHPIQMKPADSEK RKAALEAQNALHNMKVLPGMHHPIQMKPAD GMHHPIQMKPADSEKNNAVEDRKLFIGMIS K V L E K N 1 0 0 1 0 1 1 1 2 1 1 2 2 0 3 1 0 0 0 1 0 0 18 1 2014.0128 Q92879 Q92879 84 101 CELF1 CUGBP Elav-like family member 1 yes yes 4 0.0008389 73.279 By MS/MS 4 0 2 2 14668000 0 14668000 0 14711 1727 15443;15444 64637;64638 54507;54508 54507 661 2 0 4867700 0 VLPLEALVTDAGEVTEAGK HGLLEELKTVLSSHKVLPLEALVTDAGEVT EALVTDAGEVTEAGKAYVPPRVLQEALCVI K V L G K A 3 0 0 1 0 0 3 2 0 0 3 1 0 0 1 0 2 0 0 3 0 0 19 0 1911.0201 Q92616 Q92616 617 635 GCN1L1 Translational activator GCN1 yes yes 3 0.0064991 51.487 By MS/MS 1 0 1 1 895890 0 895890 0 14712 1712 15445 64639 54509 54509 1 0 437900 0 VLPMYAGLPSFEQMK QARALARTGMKRHLRVLPMYAGLPSFEQMK VLPMYAGLPSFEQMKVFERVSRSVRKVIVA R V L M K V 1 0 0 0 0 1 1 1 0 0 2 1 2 1 2 1 0 0 1 1 0 0 15 0 1709.8521 Q9H5Z1 Q9H5Z1 312 326 DHX35 Probable ATP-dependent RNA helicase DHX35 yes yes 2 0.0063868 80.69 By MS/MS By MS/MS 3 0 2 1 1 11540000 0 3274600 8265300 14713 1985 15446 64640;64641 54510;54511 54510 2 0 1396000 1603100 VLPPPAGYVPIR LSDEELDAMFPEGYKVLPPPAGYVPIRTPA GYKVLPPPAGYVPIRTPARKLTATPTPLGG K V L I R T 1 1 0 0 0 0 0 1 0 1 1 0 0 0 4 0 0 0 1 2 0 0 12 0 1277.7496 O75533 O75533 414 425 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.0011009 117.04 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 28439000 0 8316900 20123000 14714 270 15447 64642;64643;64644 54512;54513;54514;54515;54516;54517 54517 6 0 3745200 4484100 VLPQLISTITASVQNPALR SMNAMGSLSVLSPDRVLPQLISTITASVQN LISTITASVQNPALRLVTREEFAIMQTPAG R V L L R L 2 1 1 0 0 2 0 0 0 2 3 0 0 0 2 2 2 0 0 2 0 0 19 0 2020.1681 Q92616 Q92616 738 756 GCN1L1 Translational activator GCN1 yes yes 3 0.0079423 49.224 By MS/MS 1 0 1 1 880750 0 880750 0 14715 1712 15448 64645 54518 54518 1 0 430500 0 VLPSFWIPSLTPEAK QPGPSVGPPSKDKDKVLPSFWIPSLTPEAK VLPSFWIPSLTPEAKATKLEKPSRTVTCPM K V L A K A 1 0 0 0 0 0 1 0 0 1 2 1 0 1 3 2 1 1 0 1 0 0 15 0 1683.9236 Q9Y314 Q9Y314 158 172 NOSIP Nitric oxide synthase-interacting protein yes yes 2 0.0072659 78.864 By MS/MS 6 0 1 1 27792000 0 0 27792000 14716 2257 15449 64646 54519 54519 1 0 0 4158000 VLPSITTEILK LPRIFTSIGEDYDERVLPSITTEILKSVVA YDERVLPSITTEILKSVVARFDAGELITQR R V L L K S 0 0 0 0 0 0 1 0 0 2 2 1 0 0 1 1 2 0 0 1 0 0 11 0 1212.7329 P35232 P35232 118 128 PHB Prohibitin yes yes 2 0.055031 72.607 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 41835000 0 8655600 33179000 14717 740 15450 64647;64648;64649;64650 54520;54521;54522 54520 3 0 3423600 5069300 VLPSIVNEVLK LPSMYQRLGLDYEERVLPSIVNEVLKSVVA YEERVLPSIVNEVLKSVVAKFNASQLITQR R V L L K S 0 0 1 0 0 0 1 0 0 1 2 1 0 0 1 1 0 0 0 3 0 0 11 0 1209.7333 Q99623 Q99623 132 142 PHB2 Prohibitin-2 yes yes 2 0.013568 87.806 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 33931000 0 6618100 27313000 14718 1855 15451 64651;64652;64653 54523;54524;54525 54523 3 0 2291000 4124500 VLPSNAVWMENSK FLSTLDPKTISFRSRVLPSNAVWMENSKLK SRVLPSNAVWMENSKLKSLEICHPQERNIF R V L S K L 1 0 2 0 0 0 1 0 0 0 1 1 1 0 1 2 0 1 0 2 0 0 13 0 1473.7286 Q9Y305 Q9Y305 280 292 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 1.0728E-07 171.85 By MS/MS By MS/MS 4.33 0.745 1 2 3 4 2 113760000 0 55015000 58749000 14719 2256 15452;15453 64654;64655;64656;64657;64658;64659 54526;54527;54528;54529;54530;54531;54532 54528 731 7 0 14844000 8719000 VLPVPQKAVPYPQR VMFPPQSVLSLSQSKVLPVPQKAVPYPQRD KVLPVPQKAVPYPQRDMPIQAFLLYQEPVL K V L Q R D 1 1 0 0 0 2 0 0 0 0 1 1 0 0 4 0 0 0 1 3 0 0 14 1 1590.9246 CON__P02666 CON__P02666 170 183 yes yes 3 0.012276 63.76 By MS/MS 1 0 1 1 6443100 6443100 0 0 + 14720 41 15454 64660 54533 54533 1 6443100 0 0 VLPYPFTHHWQFER INEKRNIHAAAHQVRVLPYPFTHHWQFERT RVLPYPFTHHWQFERTIQTPIGSTWNTQRA R V L E R T 0 1 0 0 0 1 1 0 2 0 1 0 0 2 2 0 1 1 1 1 0 0 14 0 1855.9158 Q9BVJ6 Q9BVJ6 684 697 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 3;4 0.0029166 75.669 By MS/MS 2 0 2 2 12205000 0 0 12205000 14721 1915 15455 64661;64662 54534;54535 54534 1 0 0 2758200 VLQALEGLK MPSHFSRGSKSVARRVLQALEGLKMVEKDQ KSVARRVLQALEGLKMVEKDQDGGRKLTPQ R V L L K M 1 0 0 0 0 1 1 1 0 0 3 1 0 0 0 0 0 0 0 1 0 0 9 0 969.58588 P39019 P39019 103 111 RPS19 40S ribosomal protein S19 yes yes 2 0.0075741 92.439 By MS/MS By MS/MS By MS/MS 8.38 1.11 2 3 1 2 1 3 4 403430000 6855100 301460000 95111000 14722 777 15456 64663;64664;64665;64666;64667;64668;64669;64670 54536;54537;54538;54539;54540;54541 54536 6 5885400 155740000 20197000 VLQALGSEPIQYAVPVVK LFISTRLGTDEISPRVLQALGSEPIQYAVP ALGSEPIQYAVPVVKYDRKGYKPRSRQLLL R V L V K Y 2 0 0 0 0 2 1 1 0 1 2 1 0 0 2 1 0 0 1 4 0 0 18 0 1910.0877 O00159 O00159 910 927 MYO1C Unconventional myosin-Ic yes yes 2;3 0.00071563 93.011 By MS/MS By MS/MS 1.75 0.433 1 3 3 1 38348000 0 17611000 20737000 14723 106 15457 64671;64672;64673;64674 54542;54543;54544 54544 3 0 7969300 4686100 VLQAPPPDVGNGEVPK PLLDLPELPFPELERVLQAPPPDVGNGEVP LQAPPPDVGNGEVPKELVELHLKLMRKIGK R V L P K E 1 0 1 1 0 1 1 2 0 0 1 1 0 0 4 0 0 0 0 3 0 0 16 0 1615.857 Q96T23 Q96T23 50 65 RSF1 Remodeling and spacing factor 1 yes yes 2 0.00098573 95.401 By MS/MS By MS/MS 1 0 2 1 1 15689000 0 4243500 11445000 14724 1837 15458 64675;64676 54545;54546;54547 54546 3 0 2074100 2466000 VLQATVVAVGSGSK VTKGGIMLPEKSQGKVLQATVVAVGSGSKG KVLQATVVAVGSGSKGKGGEIQPVSVKVGD K V L S K G 2 0 0 0 0 1 0 2 0 0 1 1 0 0 0 2 1 0 0 4 0 0 14 0 1314.7507 P61604 P61604 41 54 HSPE1 10 kDa heat shock protein, mitochondrial yes yes 2 0.00037374 142.1 By MS/MS By MS/MS By MS/MS 9.75 0.433 1 3 1 1 2 34047000 11848000 7000900 15198000 14725 996 15459 64677;64678;64679;64680 54548;54549;54550;54551 54548 4 21585000 35419000 12879000 VLQDLVMDILR LDRLIELKEHPAHERVLQDLVMDILRVLST AHERVLQDLVMDILRVLSTPDLEVRKKTLQ R V L L R V 0 1 0 2 0 1 0 0 0 1 3 0 1 0 0 0 0 0 0 2 0 0 11 0 1313.7377 P53618 P53618 317 327 COPB1 Coatomer subunit beta yes yes 2 1.4544E-13 179.51 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 2831200 0 495330 2335900 14726 921 15460 64681;64682;64683 54552;54553;54554 54553 3 0 223050 482130 VLQDLVPDDR ELASAELAKEWPKRKVLQDLVPDDRKLKYT WPKRKVLQDLVPDDRKLKYTRPGLPTFSQE K V L D R K 0 1 0 3 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 10 0 1168.6088 Q96ME7 Q96ME7 367 376 ZNF512 Zinc finger protein 512 yes yes 2 0.040131 75.378 By matching By MS/MS 3.5 0.5 1 1 1 1 14808000 0 5024900 9782600 14727 1809 15461 64684;64685 54555 54555 1 0 2142100 1597800 VLQDMGLPTGAEGR SGPSKKTAKLHVAVKVLQDMGLPTGAEGRD KVLQDMGLPTGAEGRDSSKGEDSAEETEAK K V L G R D 1 1 0 1 0 1 1 3 0 0 2 0 1 0 1 0 1 0 0 1 0 0 14 0 1442.7188 Q12906 Q12906 461 474 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 7.9746E-05 157.68 By MS/MS By MS/MS By MS/MS 3.31 1.31 1 4 4 4 2 1 1 9 6 489950000 12021000 260960000 216970000 14728 1211 15462;15463 64686;64687;64688;64689;64690;64691;64692;64693;64694;64695;64696;64697;64698;64699;64700;64701 54556;54557;54558;54559;54560;54561;54562;54563;54564;54565;54566;54567;54568 54559 574 13 13869000 110350000 45057000 VLQFLVDQFLTTNIAR EAEDYPYGPVENKIKVLQFLVDQFLTTNIA LQFLVDQFLTTNIAREELMSEGVIQYDDHC K V L A R E 1 1 1 1 0 2 0 0 0 1 3 0 0 2 0 0 2 0 0 2 0 0 16 0 1877.0411 Q12830 Q12830 363 378 BPTF Nucleosome-remodeling factor subunit BPTF yes yes 2 9.5717E-19 192.05 By MS/MS 1 0 1 1 3943600 0 0 3943600 14729 1203 15464 64702 54569 54569 1 0 0 849710 VLQGVNGEMVLSQLLPMAEQLLEK CVYSCPSYIAKDLMKVLQGVNGEMVLSQLL VLSQLLPMAEQLLEKIQKEPTAVLKDEAMV K V L E K I 1 0 1 0 0 3 3 2 0 0 6 1 2 0 1 1 0 0 0 3 0 0 24 0 2638.4074 Q9H583 Q9H583 1021 1044 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 3 0.00031054 58.516 By MS/MS 1.67 0.471 1 2 3 5647600 0 0 5647600 14730 1984 15465 64703;64704;64705 54570;54571 54571 2 0 0 1248500 VLQHILNPAFLYSFEK VDFNDPNFGDELKAKVLQHILNPAFLYSFE LQHILNPAFLYSFEKGEGEQLLGPPNPEGD K V L E K G 1 0 1 0 0 1 1 0 1 1 3 1 0 2 1 1 0 0 1 1 0 0 16 0 1918.0353 Q9Y4A5 Q9Y4A5 1772 1787 TRRAP Transformation/transcription domain-associated protein yes yes 2;3 0.00012829 100.55 By MS/MS 1 0 2 2 5973000 0 0 5973000 14731 2285 15466 64706;64707 54572;54573 54573 2 0 0 1287000 VLQLMLR KDFTKQKYPEHAIHKVLQLMLRRGEIQHRM YPEHAIHKVLQLMLRRGEIQHRMQRKVLYR K V L L R R 0 1 0 0 0 1 0 0 0 0 3 0 1 0 0 0 0 0 0 1 0 0 7 0 871.53134 P33992 P33992 711 717 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.0027852 138.38 By MS/MS 6 3 1 1 2 11756000 0 11756000 0 14732 732 15467 64708;64709 54574;54575 54574 2 0 5895600 0 VLQPHPVTPSDTETR PFAWKKKALIIIWAKVLQPHPVTPSDTETR VLQPHPVTPSDTETRWQEDLFFSVGNMIPT K V L T R W 0 1 0 1 0 1 1 0 1 0 1 0 0 0 3 1 3 0 0 2 0 0 15 0 1675.8529 P57678 P57678 77 91 GEMIN4 Gem-associated protein 4 yes yes 3 0.0023223 72.175 By MS/MS 2 0 1 1 2169700 0 0 2169700 14733 955 15468 64710 54576 54576 0 0 0 490300 VLQQFADNDVSR PILHGLCTFGFSARRVLQQFADNDVSRFKA ARRVLQQFADNDVSRFKAIKARFAKPVYPG R V L S R F 1 1 1 2 0 2 0 0 0 0 1 0 0 1 0 1 0 0 0 2 0 0 12 0 1390.6841 P51659 P51659 544 555 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 yes yes 2 0.00016311 134.84 By MS/MS 3 0 1 1 6533400 0 0 6533400 14734 898 15469 64711 54577 54577 1 0 0 1267200 VLQQTLNYINQGVSHALTWK KVLYQYKEKQYMAPRVLQQTLNYINQGVSH LNYINQGVSHALTWKNLKPHIQGIIQDVIF R V L W K N 1 0 2 0 0 3 0 1 1 1 3 1 0 0 0 1 2 1 1 2 0 0 20 0 2312.2277 O95373 O95373 321 340 IPO7 Importin-7 yes yes 3 0.00196 57.009 By MS/MS 2.5 0.5 1 1 2 9270700 0 0 9270700 14735 322 15470 64712;64713 54578 54578 1 0 0 2047700 VLQSALAAIR PNLRKLDPELHLDIKVLQSALAAIRHARWF HLDIKVLQSALAAIRHARWFEENASQSTVK K V L I R H 3 1 0 0 0 1 0 0 0 1 2 0 0 0 0 1 0 0 0 1 0 0 10 0 1040.6342 Q12905 Q12905 197 206 ILF2 Interleukin enhancer-binding factor 2 yes yes 2 4.2498E-05 150.4 By MS/MS By MS/MS By MS/MS 5.91 1.78 1 1 3 2 3 1 2 4 5 825640000 37819000 436750000 351080000 14736 1210 15471 64714;64715;64716;64717;64718;64719;64720;64721;64722;64723;64724 54579;54580;54581;54582;54583;54584;54585;54586;54587;54588;54589;54590;54591 54587 13 33591000 123180000 55579000 VLQSFTVDSSK VKIAGPGLGSGVRARVLQSFTVDSSKAGLA VRARVLQSFTVDSSKAGLAPLEVRVLGPRG R V L S K A 0 0 0 1 0 1 0 0 0 0 1 1 0 1 0 3 1 0 0 2 0 0 11 0 1209.6241 O75369 O75369 1439 1449 FLNB Filamin-B yes yes 2 0.0019091 98.044 By matching By MS/MS 1 0 2 1 1 10794000 2969500 0 7824000 14737 254 15472 64725;64726 54592 54592 0 2969500 0 1685800 VLRDNIQGITK GGKGLGKGGAKRHRKVLRDNIQGITKPAIR RHRKVLRDNIQGITKPAIRRLARRGGVKRI K V L T K P 0 1 1 1 0 1 0 1 0 2 1 1 0 0 0 0 1 0 0 1 0 0 11 1 1255.7248 P62805 P62805 22 32 HIST1H4A Histone H4 yes yes 3 0.029621 60.49 By MS/MS 9 0 1 1 6279000 0 0 6279000 14738 1033 15473 64727 54593 54593 1 0 0 2005800 VLRDNIQGITKPAIR GGKGLGKGGAKRHRKVLRDNIQGITKPAIR VLRDNIQGITKPAIRRLARRGGVKRISGLI K V L I R R 1 2 1 1 0 1 0 1 0 3 1 1 0 0 1 0 1 0 0 1 0 0 15 2 1692.9999 P62805 P62805 22 36 HIST1H4A Histone H4 yes yes 3;4 0.0002585 99.069 By MS/MS By MS/MS 8.86 0.639 2 4 1 3 4 76343000 0 16950000 59393000 14739 1033 15474 64728;64729;64730;64731;64732;64733;64734 54594;54595;54596;54597;54598;54599 54599 6 0 13169000 20540000 VLRPFLLR LNEEETILIIRRLHKVLRPFLLRRLKKEVE IIRRLHKVLRPFLLRRLKKEVEAQLPEKVE K V L L R R 0 2 0 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 0 1 0 0 8 1 1012.6546 P51531;P51532;Q6ZRS2 P51532 971 978 SMARCA2;SMARCA4;SRCAP Probable global transcription activator SNF2L2;Transcription activator BRG1;Helicase SRCAP no no 2 0.0060073 125.08 By MS/MS 1 0 1 1 16911000 0 0 16911000 14740 894;893;1509 15475 64735 54600 54600 1 0 0 3643800 VLRPQVTAVAQQNQGEVPEPQDMK KFRRQHEQLRAVIVRVLRPQVTAVAQQNQG AQQNQGEVPEPQDMKVAEVLFDAADANAIE R V L M K V 2 1 1 1 0 5 2 1 0 0 1 1 1 0 3 0 1 0 0 4 0 0 24 1 2661.3544 Q14204 Q14204 483 506 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 3 0.0013437 50.783 By MS/MS 1 0 1 1 4630400 0 4630400 0 14741 1292 15476 64736 54601 54601 1 0 2263300 0 VLSALQAVQGLLVAQGR PWKDKNCTSRLDAHKVLSALQAVQGLLVAQ SALQAVQGLLVAQGRADSQAQLLLSTVVGV K V L G R A 3 1 0 0 0 3 0 2 0 0 4 0 0 0 0 1 0 0 0 3 0 0 17 0 1722.0152 P01019 P01019 180 196 AGT Angiotensinogen;Angiotensin-1;Angiotensin-2;Angiotensin-3;Angiotensin-4;Angiotensin 1-9;Angiotensin 1-7;Angiotensin 1-5;Angiotensin 1-4 yes yes 2 4.9244E-27 196.76 By MS/MS By matching 9.25 0.829 1 1 2 3 1 2038200 1983200 0 55002 14742 369 15477 64737;64738;64739;64740 54602 54602 1 1689500 0 120290 VLSAPPHFHFGQTNR FKALIAAQYSGAQVRVLSAPPHFHFGQTNR VLSAPPHFHFGQTNRTPEFLRKFPAGKVPA R V L N R T 1 1 1 0 0 1 0 1 2 0 1 0 0 2 2 1 1 0 0 1 0 0 15 0 1706.8641 P26641 P26641 31 45 EEF1G Elongation factor 1-gamma yes yes 2;3;4 2.8872E-17 186.02 By MS/MS By MS/MS 4.86 1.64 1 1 4 5 1 1 1 5 9 406260000 0 42367000 363900000 14743 674 15478 64741;64742;64743;64744;64745;64746;64747;64748;64749;64750;64751;64752;64753;64754 54603;54604;54605;54606;54607;54608;54609;54610;54611;54612 54610 9 0 11731000 55205000 VLSFIPPDGNFR SFHPCIRFKRWESERVLSFIPPDGNFRLIS SERVLSFIPPDGNFRLISYRVSSQNLVAIP R V L F R L 0 1 1 1 0 0 0 1 0 1 1 0 0 2 2 1 0 0 0 1 0 0 12 0 1360.7139 Q9Y2T2 Q9Y2T2 247 258 AP3M1 AP-3 complex subunit mu-1 yes yes 2 4.6165E-05 147.2 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 27573000 0 3505500 24067000 14744 2250 15479 64755;64756;64757;64758 54613;54614 54614 2 0 903610 3438300 VLSGTIHAGQPVK MYSTDDGVQFHAFGRVLSGTIHAGQPVKVL GRVLSGTIHAGQPVKVLGENYTLEDEEDSQ R V L V K V 1 0 0 0 0 1 0 2 1 1 1 1 0 0 1 1 1 0 0 2 0 0 13 0 1305.7405 Q15029 Q15029 496 508 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 0.00026201 146.17 By MS/MS By MS/MS 2.4 1.02 2 4 2 2 4 6 153100000 0 37510000 115590000 14745 1335 15480 64759;64760;64761;64762;64763;64764;64765;64766;64767;64768 54615;54616;54617;54618;54619 54619 5 0 16916000 24800000 VLSIGDGIAR ILGADTSVDLEETGRVLSIGDGIARVHGLR EETGRVLSIGDGIARVHGLRNVQAEEMVEF R V L A R V 1 1 0 1 0 0 0 2 0 2 1 0 0 0 0 1 0 0 0 1 0 0 10 0 999.57129 P25705 P25705 74 83 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.0012709 109.71 By MS/MS By MS/MS By MS/MS 4.25 0.433 3 1 1 1 2 52611000 4402300 26037000 22172000 14746 661 15481 64769;64770;64771;64772 54620;54621;54622 54621 3 3434600 8640700 3587700 VLSLAQEQVGGSPEK LSRGSSTWLTAFVLKVLSLAQEQVGGSPEK VLSLAQEQVGGSPEKLQETSNWLLSQQQAD K V L E K L 1 0 0 0 0 2 2 2 0 0 2 1 0 0 1 2 0 0 0 2 0 0 15 0 1540.8097 P0C0L5;P0C0L4 P0C0L5 1085 1099 C4B;C4A Complement C4-B;Complement C4 beta chain;Complement C4-B alpha chain;C4a anaphylatoxin;C4b-B;C4d-B;Complement C4 gamma chain;Complement C4-A;Complement C4 beta chain;Complement C4-A alpha chain;C4a anaphylatoxin;C4b-A;C4d-A;Complement C4 gamma chain yes no 2 0.00033756 134.38 By MS/MS 9 0 1 1 6935100 6935100 0 0 14747 495 15482 64773 54623 54623 1 3892700 0 0 VLSLFDGIATGLLVLK KVYPPVPAEKRKPIRVLSLFDGIATGLLVL LSLFDGIATGLLVLKDLGIQVDRYIASEVC R V L L K D 1 0 0 1 0 0 0 2 0 1 5 1 0 1 0 1 1 0 0 2 0 0 16 0 1658.0018 Q9Y6K1 Q9Y6K1 636 651 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes yes 2 3.3965E-05 128.28 By MS/MS 2 0.816 1 1 1 3 12821000 0 0 12821000 14748 2313 15483 64774;64775;64776 54624 54624 1 0 0 2856700 VLSLQEEIAK RLQLSEEEAKVATGRVLSLQEEIAKLRKDL VATGRVLSLQEEIAKLRKDLEQTRSEKKCI R V L A K L 1 0 0 0 0 1 2 0 0 1 2 1 0 0 0 1 0 0 0 1 0 0 10 0 1128.639 Q9Y4I1 Q9Y4I1 985 994 MYO5A Unconventional myosin-Va yes yes 2 0.004698 93.598 By MS/MS 1 0 1 1 1790400 0 1790400 0 14749 2287 15484 64777 54625 54625 0 0 875120 0 VLSMAPGLTSVEIIPFR PETKKDLYEPTHGGKVLSMAPGLTSVEIIP SMAPGLTSVEIIPFRVAAYNKAKKAMDFYD K V L F R V 1 1 0 0 0 0 1 1 0 2 2 0 1 1 2 2 1 0 0 2 0 0 17 0 1829.0121 O95340 O95340 535 551 PAPSS2 Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase yes yes 2 0.0041078 77.597 By MS/MS 3 0 1 1 1422500 0 1422500 0 14750 320 15485 64778 54626 54626 1 0 606410 0 VLSNRPIMFR NFGFVVFDDSEPVQKVLSNRPIMFRGEVRL EPVQKVLSNRPIMFRGEVRLNVEEKKTRAA K V L F R G 0 2 1 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 1 0 0 10 1 1231.6859 Q13283 Q13283 394 403 G3BP1 Ras GTPase-activating protein-binding protein 1 yes yes 2;3 2.556E-15 175.51 By MS/MS By MS/MS 4.55 2.15 2 1 5 5 1 3 3 1 1 14 8 502560000 0 271340000 231210000 14751 1236 15486;15487 64779;64780;64781;64782;64783;64784;64785;64786;64787;64788;64789;64790;64791;64792;64793;64794;64795;64796;64797;64798;64799;64800 54627;54628;54629;54630;54631;54632;54633;54634;54635;54636;54637;54638;54639;54640;54641 54638 578 15 0 99892000 40796000 VLSPQDQDVQDNPR SMRRAPLMWELIHKKVLSPQDQDVQDNPRG KVLSPQDQDVQDNPRGRSAKLRAAIKL___ K V L P R G 0 1 1 3 0 3 0 0 0 0 1 0 0 0 2 1 0 0 0 2 0 0 14 0 1609.7696 A6NJ78 A6NJ78 382 395 METTL15 Probable methyltransferase-like protein 15 yes yes 2 2.7433E-11 177.57 By MS/MS 5 0 1 1 4627600 0 0 4627600 14752 16 15488 64801 54642 54642 1 0 0 645460 VLSRPNAQELPSMYQR PTGSKDLQMVNISLRVLSRPNAQELPSMYQ LSRPNAQELPSMYQRLGLDYEERVLPSIVN R V L Q R L 1 2 1 0 0 2 1 0 0 0 2 0 1 0 2 2 0 0 1 1 0 0 16 1 1887.9625 Q99623 Q99623 108 123 PHB2 Prohibitin-2 yes yes 2;3 1.964E-59 237.48 By MS/MS 6 0 2 2 47173000 0 0 47173000 14753 1855 15489 64802;64803 54643;54644 54643 2 0 0 7057600 VLSSIEQK VAYKNVVGGQRAAWRVLSSIEQKSNEEGSE GQRAAWRVLSSIEQKSNEEGSEEKGPEVRE R V L Q K S 0 0 0 0 0 1 1 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 8 0 902.5073 P31947 P31947 61 68 SFN 14-3-3 protein sigma yes yes 2 0.0053842 99.375 By MS/MS By MS/MS By matching 7.33 0.943 1 3 1 1 1 3 2 45950000 9412900 17303000 19234000 14754 725 15490 64804;64805;64806;64807;64808;64809 54645;54646 54646 2 20287000 9026200 3425200 VLSSIRVPIIVPIMMLAIK ALKDPNQLIRASALRVLSSIRVPIIVPIMM IRVPIIVPIMMLAIKEASADLSPYVRKNAA R V L I K E 1 1 0 0 0 0 0 0 0 5 2 1 2 0 2 2 0 0 0 3 0 0 19 1 2092.288 O00203;Q13367 O00203 138 156 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 3 0.0019534 63.46 By MS/MS 2 0 1 1 4403100 0 0 4403100 14755 111 15491 64810 54647 54647 1 0 0 995020 VLSSLQTIQGLLVAQGGASSQAR PGEGQGCTSRLDGHKVLSSLQTIQGLLVAQ QGLLVAQGGASSQARLLLSTVVGLFTAPGL K V L A R L 3 1 0 0 0 4 0 3 0 1 4 0 0 0 0 4 1 0 0 2 0 0 23 0 2283.2547 CON__Q3SZH5 CON__Q3SZH5 170 192 yes yes 3 9.918E-10 93.73 By MS/MS 4 0 1 1 2435300 0 2435300 0 + 14756 84 15492 64811 54648 54648 1 0 808180 0 VLSTAGPSEALQPLVYPLAQVIIGCIK VYNWQYVHCLFLWCRVLSTAGPSEALQPLV PLVYPLAQVIIGCIKLIPTARFYPLRMHCI R V L I K L 3 0 0 0 1 2 1 2 0 3 4 1 0 0 3 2 1 0 1 3 0 0 27 0 2836.5772 Q9Y3T9 Q9Y3T9 418 444 NOC2L Nucleolar complex protein 2 homolog yes yes 3 4.7733E-05 53.747 By MS/MS 2.5 0.5 1 1 2 3450700 0 0 3450700 14757 2277 15493 64812;64813 54649 54649 1 0 0 690870 VLSVCPSNKPAIVEAGGMQALGK YSYEKLLWTTSRVLKVLSVCPSNKPAIVEA KPAIVEAGGMQALGKHLTSNSPRLVQNCLW K V L G K H 3 0 1 0 1 1 1 3 0 1 2 2 1 0 2 2 0 0 0 3 0 0 23 1 2325.2185 P14923 P14923 337 359 JUP Junction plakoglobin yes yes 3 0.010016 40.81 By MS/MS 9.5 0.5 1 1 2 4572300 4572300 0 0 14758 567 15494 64814;64815 54650 54650 1 4482700 0 0 VLSVPESTPFTAVLK SFKITLTSDPRLPYKVLSVPESTPFTAVLK VLSVPESTPFTAVLKFAAEEFKVPAATSAI K V L L K F 1 0 0 0 0 0 1 0 0 0 2 1 0 1 2 2 2 0 0 3 0 0 15 0 1586.892 P61960 P61960 20 34 UFM1 Ubiquitin-fold modifier 1 yes yes 2 0.0056739 82.171 By MS/MS By MS/MS 10 0 2 1 1 7504000 0 3507400 3996600 14759 999 15495 64816;64817 54651;54652 54652 2 0 17745000 8741000 VLTANSNPSSPSAAK KEGADKRKRSRVTDKVLTANSNPSSPSAAK VLTANSNPSSPSAAKRRRT___________ K V L A K R 3 0 2 0 0 0 0 0 0 0 1 1 0 0 2 4 1 0 0 1 0 0 15 0 1442.7365 Q9NV56 Q9NV56 186 200 MRGBP MRG/MORF4L-binding protein yes yes 2 0.005582 82.362 By MS/MS 6 0 1 1 2500800 0 0 2500800 14760 2064 15496 64818 54653 54653 1 0 0 374140 VLTEIIASR YELKHALKGAGTNEKVLTEIIASRTPEELR AGTNEKVLTEIIASRTPEELRAIKQVYEEE K V L S R T 1 1 0 0 0 0 1 0 0 2 1 0 0 0 0 1 1 0 0 1 0 0 9 0 1000.5917 P08758 P08758 109 117 ANXA5 Annexin A5 yes yes 2 2.8788E-05 150.24 By MS/MS By MS/MS By MS/MS 6.25 0.433 3 1 1 1 2 42084000 10045000 5313000 26726000 14761 479 15497 64819;64820;64821;64822 54654;54655;54656 54656 3 13375000 1839200 4062800 VLTELLEQER PWPLNEAQVQASVVKVLTELLEQERKKVVD ASVVKVLTELLEQERKKVVDTTKESSRKGW K V L E R K 0 1 0 0 0 1 3 0 0 0 3 0 0 0 0 0 1 0 0 1 0 0 10 0 1228.6663 Q13428 Q13428 1318 1327 TCOF1 Treacle protein yes yes 2 1.2976E-38 210.37 By matching By MS/MS 3 1.58 1 1 1 1 1 3 28145000 0 1717400 26428000 14762 1247 15498 64823;64824;64825;64826 54657;54658;54659 54658 3 0 839460 4914100 VLTFDLTK LIGVYPEQGDCVISKVLTFDLTKYPDANPN GDCVISKVLTFDLTKYPDANPNPNEQ____ K V L T K Y 0 0 0 1 0 0 0 0 0 0 2 1 0 1 0 0 2 0 0 1 0 0 8 0 935.53278 Q14683 Q14683 1215 1222 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 0.040902 75.213 By MS/MS 2 0.816 1 1 1 3 38210000 0 0 38210000 14763 1312 15499 64827;64828;64829 54660 54660 1 0 0 8402400 VLTFDLTKYPDANPNPNEQ LIGVYPEQGDCVISKVLTFDLTKYPDANPN DLTKYPDANPNPNEQ_______________ K V L E Q - 1 0 3 2 0 1 1 0 0 0 2 1 0 1 3 0 2 0 1 1 0 0 19 1 2175.0484 Q14683 Q14683 1215 1233 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 4.8446E-51 221.86 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 26380000 0 6011800 20368000 14764 1312 15500 64830;64831;64832 54661;54662 54661 2 0 2707200 4504400 VLTISTLR PAGEFKWNGSVHGSKVLTISTLRLTITQLE GSVHGSKVLTISTLRLTITQLENNIPSSFL K V L L R L 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 1 2 0 0 1 0 0 8 0 901.55967 Q12830 Q12830 900 907 BPTF Nucleosome-remodeling factor subunit BPTF yes yes 2 0.0016872 112.37 By MS/MS 1 0 1 1 7362600 0 0 7362600 14765 1203 15501 64833 54663 54663 1 0 0 1586400 VLTLVSQIDVNNEFEK TRFTDELMEQGLTYKVLTLVSQIDVNNEFE LTLVSQIDVNNEFEKLQRERGLGSEKHRKE K V L E K L 0 0 2 1 0 1 2 0 0 1 2 1 0 1 0 1 1 0 0 3 0 0 16 0 1846.9676 Q92621 Q92621 186 201 NUP205 Nuclear pore complex protein Nup205 yes yes 2 5.67E-05 140.24 By MS/MS 1.5 0.5 1 1 2 6353900 0 0 6353900 14766 1714 15502 64834;64835 54664 54664 1 0 0 1387700 VLTPEEQLADKLR QEEIKKRLEEPEEPKVLTPEEQLADKLRLK PKVLTPEEQLADKLRLKKLQEESDLELAKE K V L L R L 1 1 0 1 0 1 2 0 0 0 3 1 0 0 1 0 1 0 0 1 0 0 13 1 1510.8355 O75822 O75822 107 119 EIF3J Eukaryotic translation initiation factor 3 subunit J yes yes 3 0.00071501 105.65 By MS/MS 6 0 1 1 2675500 0 2675500 0 14767 285 15503 64836 54665 54665 1 0 926160 0 VLTPELYAELR DEFPDLSAHNNHMAKVLTPELYAELRAKST HMAKVLTPELYAELRAKSTPSGFTLDDVIQ K V L L R A 1 1 0 0 0 0 2 0 0 0 3 0 0 0 1 0 1 0 1 1 0 0 11 0 1302.7184 P12277 P12277 33 43 CKB Creatine kinase B-type yes yes 2 0.00027084 134.25 By MS/MS By MS/MS By MS/MS 5.83 0.898 3 1 2 1 3 2 29837000 4699700 5994700 19142000 14768 538 15504 64837;64838;64839;64840;64841;64842 54666;54667;54668 54666 3 3765000 1744200 2776600 VLTPTQVK LHVTYAGAAVDELGKVLTPTQVKNRPTSIS AVDELGKVLTPTQVKNRPTSISWDGLDSGK K V L V K N 0 0 0 0 0 1 0 0 0 0 1 1 0 0 1 0 2 0 0 2 0 0 8 0 884.53312 P30086 P30086 40 47 PEBP1 Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide yes yes 2 0.035693 83.753 By MS/MS 10 0 1 1 0 0 0 0 14769 710 15505 64843 54669 54669 1 0 0 0 VLTSGIFETK QADYVPSDQDLLRCRVLTSGIFETKFQVDK LLRCRVLTSGIFETKFQVDKVNFHMFDVGG R V L T K F 0 0 0 0 0 0 1 1 0 1 1 1 0 1 0 1 2 0 0 1 0 0 10 0 1093.6019 P63092;Q5JWF2 P63092 202 211 GNAS Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas yes no 2 0.0069776 93.649 By matching By MS/MS 5 0.816 1 1 1 1 2 15682000 794760 0 14887000 14770 1058 15506 64844;64845;64846 54670 54670 1 620050 0 2092800 VLTVINQTQK SKLSKIRVVRKSIARVLTVINQTQKENLRK KSIARVLTVINQTQKENLRKFYKGKKYKPL R V L Q K E 0 0 1 0 0 2 0 0 0 1 1 1 0 0 0 0 2 0 0 2 0 0 10 0 1142.6659 P42766 P42766 57 66 RPL35 60S ribosomal protein L35 yes yes 2 2.4826E-30 205.36 By MS/MS By MS/MS By MS/MS 7.23 2.19 1 1 1 1 3 2 1 3 2 6 5 605780000 3988700 298000000 303790000 14771 810 15507 64847;64848;64849;64850;64851;64852;64853;64854;64855;64856;64857;64858;64859 54671;54672;54673;54674;54675;54676;54677;54678;54679 54674 8 7239600 288790000 271400000 VLTVINQTQKENLR SKLSKIRVVRKSIARVLTVINQTQKENLRK RVLTVINQTQKENLRKFYKGKKYKPLDLRP R V L L R K 0 1 2 0 0 2 1 0 0 1 2 1 0 0 0 0 2 0 0 2 0 0 14 1 1654.9366 P42766 P42766 57 70 RPL35 60S ribosomal protein L35 yes yes 2;3 5.1848E-88 255.19 By MS/MS By MS/MS 7.73 1.14 2 2 5 1 1 9 2 89588000 0 81951000 7637300 14772 810 15508 64860;64861;64862;64863;64864;64865;64866;64867;64868;64869;64870 54680;54681;54682;54683;54684;54685;54686;54687;54688 54685 9 0 45816000 1170900 VLTWDVGK LTPTQGSYTFDPVTKVLTWDVGKITPQKLP TFDPVTKVLTWDVGKITPQKLPSLKGLVNL K V L G K I 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 1 0 2 0 0 8 0 916.50182 Q9Y2T2 Q9Y2T2 338 345 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.0014636 115.46 By MS/MS By MS/MS 5 0 2 1 1 19096000 0 3368400 15727000 14773 2250 15509 64871;64872 54689;54690 54690 2 0 868280 2193700 VLVAEVNALQGMAAIGQR NLRGQTVCNVKLLHRVLVAEVNALQGMAAI AEVNALQGMAAIGQRPLLMEEISTVLQYVV R V L Q R P 4 1 1 0 0 2 1 2 0 1 2 0 1 0 0 0 0 0 0 3 0 0 18 0 1839.0037 Q92621 Q92621 1235 1252 NUP205 Nuclear pore complex protein Nup205 yes yes 3 3.2067E-06 105.39 By MS/MS 1 0 1 1 4649400 0 0 4649400 14774 1714 15510 64873 54691 54691 1 0 0 1001800 VLVAGDTMDSVK GSREMAEAFAGEIPKVLVAGDTMDSVKQSA IPKVLVAGDTMDSVKQSAALCLLRLYRTSP K V L V K Q 1 0 0 2 0 0 0 1 0 0 1 1 1 0 0 1 1 0 0 3 0 0 12 0 1233.6275 O94973 O94973 154 165 AP2A2 AP-2 complex subunit alpha-2 yes yes 2 0.043074 74.944 By matching By MS/MS By MS/MS 2 0.632 1 3 1 2 1 2 36047000 14257000 7213300 14577000 14775 306 15511 64874;64875;64876;64877;64878 54692;54693 54692 2 15779000 3248200 3259400 VLVASATMDTAR FGLIKDVARFRPELKVLVASATMDTARFST ELKVLVASATMDTARFSTFFDDAPVFRIPG K V L A R F 3 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 2 0 0 2 0 0 12 0 1233.6387 O60231 O60231 548 559 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 2 6.5845E-05 142.98 By matching By MS/MS 2 0 2 1 1 12432000 3212100 0 9219800 14776 221 15512 64879;64880 54694 54694 1 3870200 0 2083500 VLVATNVAAR QREITLKGFREGSFKVLVATNVAARGLDIP EGSFKVLVATNVAARGLDIPEVDLVIQSSP K V L A R G 3 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 3 0 0 10 0 1012.6029 Q9BQ39 Q9BQ39 441 450 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.00021517 141.39 By MS/MS By MS/MS 3.8 2.64 2 2 1 3 2 52295000 0 18174000 34121000 14777 1876 15513 64881;64882;64883;64884;64885 54695;54696;54697;54698 54695 3 0 8575300 6791100 VLVDQTTGLSR VEDMFSRFGRIINSRVLVDQTTGLSRGVAF INSRVLVDQTTGLSRGVAFIRFDKRSEAEE R V L S R G 0 1 0 1 0 1 0 1 0 0 2 0 0 0 0 1 2 0 0 2 0 0 11 0 1187.651 Q15717 Q15717 137 147 ELAVL1 ELAV-like protein 1 yes yes 2 1.3799E-13 179.8 By MS/MS By MS/MS 5 1.73 1 1 1 1 2 2 6 2 530290000 0 324030000 206260000 14778 1380 15514 64886;64887;64888;64889;64890;64891;64892;64893 54699;54700;54701;54702;54703;54704;54705;54706;54707 54701 9 0 113890000 31040000 VLVDSLVEDDR QQQWLLYLSNSGYLKVLVDSLVEDDRTLQS GYLKVLVDSLVEDDRTLQSLLTPQPPLLKA K V L D R T 0 1 0 3 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 3 0 0 11 0 1258.6405 Q92621 Q92621 1524 1534 NUP205 Nuclear pore complex protein Nup205 yes yes 2 6.4781E-06 152.28 By MS/MS 1 0 1 1 21430000 0 0 21430000 14779 1714 15515 64894 54708 54708 1 0 0 4617300 VLVDSSFGQPTTQGEAR WRLVFLVKNFPVGQRVLVDSSFGQPTTQGE VDSSFGQPTTQGEARREEATRQGELPLVKE R V L A R R 1 1 0 1 0 2 1 2 0 0 1 0 0 1 1 2 2 0 0 2 0 0 17 0 1790.8799 Q10570 Q10570 817 833 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 2.1514E-27 202.32 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 23948000 0 14016000 9931900 14780 1194 15516 64895;64896;64897;64898 54709;54710;54711 54710 3 0 6533600 2175800 VLVDVER SAYKHADGKKIDGRRVLVDVERGRTVKGWR GKKIDGRRVLVDVERGRTVKGWRPRRLGGG R V L E R G 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 7 0 828.47052 P08621 P08621 174 180 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.0027579 138.07 By MS/MS By MS/MS 4.5 1.12 2 2 2 2 4 4 137610000 0 45004000 92606000 14781 474 15517 64899;64900;64901;64902;64903;64904;64905;64906 54712;54713;54714;54715;54716 54715 5 0 14888000 15658000 VLVEATYNPNMPFK QLSAVKGKTPQVGDRVLVEATYNPNMPFKW RVLVEATYNPNMPFKWNAQRIQTLPNQNQS R V L F K W 1 0 2 0 0 0 1 0 0 0 1 1 1 1 2 0 1 0 1 2 0 0 14 0 1621.8174 Q8IX12 Q8IX12 186 199 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2 0.00037479 139.39 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 21386000 0 6176300 15209000 14782 1579 15518 64907;64908;64909 54717;54718;54719 54717 3 0 2781300 3386500 VLVEGPLNNLR QPLWNHLLNYYKEQKVLVEGPLNNLRESLM KEQKVLVEGPLNNLRESLMQFSKPRKLVNT K V L L R E 0 1 2 0 0 0 1 1 0 0 3 0 0 0 1 0 0 0 0 2 0 0 11 0 1222.7034 Q92900 Q92900 908 918 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0032064 93.551 By MS/MS By MS/MS 2 0 2 1 1 17613000 0 10828000 6785300 14783 1729 15519 64910;64911 54720;54721 54720 0 0 4875900 1533300 VLVFNPEEPDGGFPGLK LDSQRRPVVQVVDERVLVFNPEEPDGGFPG VFNPEEPDGGFPGLKWGGTHDGPKKKGKDL R V L L K W 0 0 1 1 0 0 2 3 0 0 2 1 0 2 3 0 0 0 0 2 0 0 17 0 1813.9251 Q86Y91 Q86Y91 37 53 KIF18B Kinesin-like protein KIF18B yes yes 2 2.4724E-05 107.85 By MS/MS 2 0 1 1 5581600 0 0 5581600 14784 1562 15520 64912 54722 54722 1 0 0 1261300 VLVHRPHGPELDADPYDPGEEDPAQSR LPFICNLLRRHPACRVLVHRPHGPELDADP ADPYDPGEEDPAQSRALESSLWELQALQRH R V L S R A 2 2 0 4 0 1 3 2 2 0 2 0 0 0 5 1 0 0 1 2 0 0 27 1 2995.406 Q9BVI4 Q9BVI4 403 429 NOC4L Nucleolar complex protein 4 homolog yes yes 4 4.518E-15 96.317 By MS/MS 4 0 1 1 25103000 0 0 25103000 14785 1914 15521 64913 54723 54723 1 0 0 4100100 VLVIGATNRPDSLDPALR LTCMDDLNNVAATARVLVIGATNRPDSLDP IGATNRPDSLDPALRRAGRFDREICLGIPD R V L L R R 2 2 1 2 0 0 0 1 0 1 3 0 0 0 2 1 1 0 0 2 0 0 18 1 1906.0636 O15381 O15381 404 421 NVL Nuclear valosin-containing protein-like yes yes 3 0.0048338 58.159 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 18965000 0 2894600 16070000 14786 180 15522 64914;64915;64916 54724;54725;54726 54726 3 0 1303500 3337700 VLVLAPTR LQRNQETIKKSRSPKVLVLAPTRELANQVA KKSRSPKVLVLAPTRELANQVAKDFKDITR K V L T R E 1 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 2 0 0 8 0 867.55419 Q9BQ39 Q9BQ39 214 221 DDX50 ATP-dependent RNA helicase DDX50 yes yes 2 0.01344 89.55 By MS/MS By MS/MS 4.67 3.09 1 1 1 2 1 10783000 0 3348500 7434800 14787 1876 15523 64917;64918;64919 54727;54728 54728 2 0 2187800 1442000 VLVLDTDYKK KIPAVFKIDALNENKVLVLDTDYKKYLLFC LNENKVLVLDTDYKKYLLFCMENSAEPEQS K V L K K Y 0 0 0 2 0 0 0 0 0 0 2 2 0 0 0 0 1 0 1 2 0 0 10 1 1192.6703 CON__P02754 CON__P02754 92 101 yes yes 2 0.0072339 99.802 By MS/MS 5.5 4.5 1 1 2 43695000 43695000 0 0 + 14788 43 15524 64920;64921 54729;54730 54730 2 46657000 0 0 VLVLSQDYGK FQEMLYIMDWMDEMKVLVLSQDYGKHLLGV MDEMKVLVLSQDYGKHLLGVEDLLQKHTLV K V L G K H 0 0 0 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 2 0 0 10 0 1120.6128 Q01082 Q01082 549 558 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.00025897 140.5 By matching By MS/MS By MS/MS 1.5 0.866 3 1 1 1 2 84434000 2873600 32991000 48569000 14789 1128 15525 64922;64923;64924;64925 54731;54732 54731 2 2873600 16126000 10390000 VLVLVPTR LERLIYKPRQAPVTRVLVLVPTRELGIQVH RQAPVTRVLVLVPTRELGIQVHSVTRQLAQ R V L T R E 0 1 0 0 0 0 0 0 0 0 2 0 0 0 1 0 1 0 0 3 0 0 8 0 895.58549 Q96GQ7 Q96GQ7 292 299 DDX27 Probable ATP-dependent RNA helicase DDX27 yes yes 2 0.0041239 102.71 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 51476000 0 13310000 38166000 14790 1793 15526 64926;64927;64928;64929 54733;54734;54735 54733 3 0 5993800 7975200 VLVNDAQK MAILQIMKELNKRGRVLVNDAQKVTEGQQE ELNKRGRVLVNDAQKVTEGQQERLERQHWT R V L Q K V 1 0 1 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 8 0 885.49198 Q13263 Q13263 312 319 TRIM28 Transcription intermediary factor 1-beta yes yes 2 0.022107 82.671 By MS/MS By matching 2.5 0.5 1 1 1 1 5387400 0 2131700 3255700 14791 1235 15527 64930;64931 54736 54736 1 0 959910 631460 VLVPATDR CGNYSGAAEYLYFFRVLVPATDRNALSSLW EYLYFFRVLVPATDRNALSSLWGKLASEIL R V L D R N 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 0 8 0 869.49707 P60228 P60228 156 163 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 2 0.011737 91.626 By MS/MS 5 0 1 1 3137200 0 3137200 0 14792 963 15528 64932 54737 54737 1 0 808670 0 VLVPGIPGHHAAIKPAPPQTEQVESK AITKVRTPVMNSEAKVLVPGIPGHHAAIKP AIKPAPPQTEQVESKRKSGGNEVSIEERLG K V L S K R 3 0 0 0 0 2 2 2 2 2 1 2 0 0 5 1 1 0 0 3 0 0 26 1 2699.4759 Q15061 Q15061 403 428 WDR43 WD repeat-containing protein 43 yes yes 4;5 1.7122E-05 66.372 By MS/MS By MS/MS 2.43 0.728 1 2 4 3 4 161940000 0 43922000 118010000 14793 1343 15529 64933;64934;64935;64936;64937;64938;64939 54738;54739;54740;54741 54740 4 0 18798000 23414000 VLVSGLPPSGSWQDLK RGGRNGPPTRRSDFRVLVSGLPPSGSWQDL LVSGLPPSGSWQDLKDHMREAGDVCYADVQ R V L L K D 0 0 0 1 0 1 0 2 0 0 3 1 0 0 2 3 0 1 0 2 0 0 16 0 1681.9039 Q13242 Q13242 113 128 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 2 3.4288E-05 147.58 By MS/MS By MS/MS 6.67 0.471 2 4 3 3 95937000 0 10667000 85270000 14794 1232 15530 64940;64941;64942;64943;64944;64945 54742;54743;54744;54745;54746;54747;54748;54749;54750;54751;54752;54753;54754;54755 54752 14 0 5718300 14840000 VLVSGLPPSGSWQDLKDHMR RGGRNGPPTRRSDFRVLVSGLPPSGSWQDL LPPSGSWQDLKDHMREAGDVCYADVQKDGV R V L M R E 0 1 0 2 0 1 0 2 1 0 3 1 1 0 2 3 0 1 0 2 0 0 20 1 2221.1314 Q13242 Q13242 113 132 SRSF9 Serine/arginine-rich splicing factor 9 yes yes 4 6.0921E-14 139.46 By matching By MS/MS 7 0 2 1 1 17514000 0 3242000 14272000 14795 1232 15531 64946;64947 54756;54757 54756 2 0 1861600 2532500 VLVWDLR SVSGDRLIVGTAGRRVLVWDLRNMGYVQQR IVGTAGRRVLVWDLRNMGYVQQRRESSLKY R V L L R N 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 2 0 0 7 0 899.52289 O43684 O43684 159 165 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 0.015134 111.28 By MS/MS By MS/MS 5.67 0.471 1 2 1 2 27891000 0 4169100 23722000 14796 209 15532 64948;64949;64950 54758;54759;54760 54759 3 0 1443200 3408400 VLVYELLLGK GLLRAEKKLRPHLAKVLVYELLLGKGFRGG PHLAKVLVYELLLGKGFRGGGGRWKALLGR K V L G K G 0 0 0 0 0 0 1 1 0 0 4 1 0 0 0 0 0 0 1 2 0 0 10 0 1145.706 Q96P11 Q96P11 73 82 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 0.061552 69.825 By MS/MS 4 0 1 1 2406200 0 0 2406200 14797 1815 15533 64951 54761 54761 1 0 0 393000 VLVYNNTSIVQDEILAHR RRILLAEVPTMAVEKVLVYNNTSIVQDEIL YNNTSIVQDEILAHRLGLIPIHADPRLFEY K V L H R L 1 1 2 1 0 1 1 0 1 2 2 0 0 0 0 1 1 0 1 3 0 0 18 0 2083.1062 O15160 O15160 92 109 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes yes 3 6.5321E-09 113.69 By MS/MS 5 0 1 1 14618000 0 0 14618000 14798 171 15534 64952 54762 54762 1 0 0 2039000 VLYAYGYYTGEPSK PRIASGLGLAWIVGRVLYAYGYYTGEPSKR RVLYAYGYYTGEPSKRSRGALGSIALLGLV R V L S K R 1 0 0 0 0 0 1 2 0 0 1 1 0 0 1 1 1 0 4 1 0 0 14 0 1609.7664 O14880 O14880 98 111 MGST3 Microsomal glutathione S-transferase 3 yes yes 2 0.00060709 79.693 By MS/MS 8 0 1 1 0 0 0 0 14799 149 15535 64953 54763 54763 1 0 0 0 VLYDAEISQIHQSVTDTNVILSMDNSR QSKVDLLNQEIEFLKVLYDAEISQIHQSVT SVTDTNVILSMDNSRNLDLDSIIAEVKAQY K V L S R N 1 1 2 3 0 2 1 0 1 3 2 0 1 0 0 4 2 0 1 3 0 0 27 0 3047.487 CON__P35908;CON__P35908v2;P35908 CON__P35908 321 347 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3;4 0 377.31 By MS/MS By MS/MS By MS/MS 3.98 2.69 15 8 10 8 5 3 4 5 3 2 22 6 35 1038200000 351740000 28097000 658340000 + 14800 65;66 15536;15537 64954;64955;64956;64957;64958;64959;64960;64961;64962;64963;64964;64965;64966;64967;64968;64969;64970;64971;64972;64973;64974;64975;64976;64977;64978;64979;64980;64981;64982;64983;64984;64985;64986;64987;64988;64989;64990;64991;64992;64993;64994;64995;64996;64997;64998;64999;65000;65001;65002;65003;65004;65005;65006;65007;65008;65009;65010;65011;65012;65013;65014;65015;65016 54764;54765;54766;54767;54768;54769;54770;54771;54772;54773;54774;54775;54776;54777;54778;54779;54780;54781;54782;54783;54784;54785;54786;54787;54788;54789;54790;54791;54792;54793;54794;54795;54796;54797;54798;54799;54800;54801;54802;54803;54804;54805;54806;54807;54808;54809;54810;54811;54812;54813;54814;54815;54816;54817;54818;54819 54794 53 56 311560000 12878000 124280000 VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR ILGGVDQIHIKPGAKVLYLGAASGTTVSHV VGPDGLVYAVEFSHRSGRDLINLAKKRTNI K V L H R S 3 1 0 2 0 0 1 4 2 1 3 0 0 1 1 4 2 0 2 6 0 0 33 0 3415.7412 P22087 P22087 163 195 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 4 0.00022777 39.899 By MS/MS 2.67 1.7 1 1 1 3 14718000 0 0 14718000 14801 627 15538 65017;65018;65019 54820;54821 54821 2 0 0 2887800 VLYLLSQLQQSQMAEK LQAELVRMEQQHQEKVLYLLSQLQQSQMAE LYLLSQLQQSQMAEKQLEESVSEKEQQLLS K V L E K Q 1 0 0 0 0 4 1 0 0 0 4 1 1 0 0 2 0 0 1 1 0 0 16 0 1877.9921 O95239 O95239 931 946 KIF4A Chromosome-associated kinesin KIF4A yes yes 2 6.7217E-19 193.22 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 23107000 0 4571100 18536000 14802 314 15539 65020;65021;65022;65023 54822;54823;54824 54824 3 0 2090600 4135100 VLYLPSFFTYAK EPMPPTLGTNVLGRKVLYLPSFFTYAKYIV GRKVLYLPSFFTYAKYIVQVDGKIGLFRGL K V L A K Y 1 0 0 0 0 0 0 0 0 0 2 1 0 2 1 1 1 0 2 1 0 0 12 0 1447.7751 Q9NZJ7 Q9NZJ7 126 137 MTCH1 Mitochondrial carrier homolog 1 yes yes 2 0.0083828 96.89 By matching By MS/MS 6.33 0.471 2 1 1 2 8271300 0 981840 7289500 14803 2105 15540 65024;65025;65026 54825 54825 1 0 339880 1103900 VLYQVEGFVDKNNDLLYR SLPHSCFRIQHYAGKVLYQVEGFVDKNNDL QVEGFVDKNNDLLYRDLSQAMWKASHALIK K V L Y R D 0 1 2 2 0 1 1 1 0 0 3 1 0 1 0 0 0 0 2 3 0 0 18 1 2184.1215 O43795 O43795 519 536 MYO1B Unconventional myosin-Ib yes yes 3 0.00019903 91.475 By MS/MS 2 0 1 1 3058900 0 3058900 0 14804 212 15541 65027 54826 54826 1 0 1377500 0 VLYSNMLGEENTYLWR SMQGLCKFGFYEVFKVLYSNMLGEENTYLW LYSNMLGEENTYLWRTSLYLAASASAEFFA K V L W R T 0 1 2 0 0 0 2 1 0 0 3 0 1 0 0 1 1 1 2 1 0 0 16 0 1986.9509 Q00325 Q00325 146 161 SLC25A3 Phosphate carrier protein, mitochondrial yes yes 2 1.6871E-35 209.19 By MS/MS 6 0 1 1 12838000 0 0 12838000 14805 1121 15542 65028 54827 54827 1 0 0 1920800 VMAHSSPQSILDDVAMVLDEEAEVFIVK IGEEEATLVDFVCSKVMAHSSPQSILDDVA VAMVLDEEAEVFIVKMWRLLIYETEAKKIG K V M V K M 3 0 0 3 0 1 3 0 1 2 2 1 2 1 1 3 0 0 0 5 0 0 28 0 3071.5195 P49756 P49756 798 825 RBM25 RNA-binding protein 25 yes yes 3 3.6764E-07 66.012 By MS/MS 2 0 1 1 2602000 0 0 2602000 14806 866 15543 65029 54828 54828 1 0 0 588000 VMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGR KEDPDGEHARRAMQKVMATTGGMGMGPGGP PNIPNEIIHALQAGRLGSTVFVANLDYKVG K V M G R L 3 1 4 0 0 1 1 8 1 6 2 0 4 0 6 1 3 0 0 1 0 0 42 0 4194.121 P52272 P52272 160 201 HNRNPM Heterogeneous nuclear ribonucleoprotein M yes yes 3;4;5 2.6061E-49 103.94 By MS/MS By MS/MS 2.73 0.772 1 4 8 2 1 14 191210000 0 815950 190390000 14807 902 15544;15545 65030;65031;65032;65033;65034;65035;65036;65037;65038;65039;65040;65041;65042;65043;65044 54829;54830;54831;54832;54833;54834;54835;54836;54837;54838;54839 54837 444;445;446;447 11 0 347840 37857000 VMATTGGTNLRDDIMR SQICIQVSKHMGGAKVMATTGGTNLRDDIM MATTGGTNLRDDIMRLDDTVHVVIATPGRI K V M M R L 1 2 1 2 0 0 0 2 0 1 1 0 2 0 0 0 3 0 0 1 0 0 16 1 1749.8502 P26196 P26196 196 211 DDX6 Probable ATP-dependent RNA helicase DDX6 yes yes 2 0.0039503 97.911 By MS/MS 4 0 1 1 2442300 0 2442300 0 14808 665 15546 65045 54840 54840 1 0 810510 0 VMDKYTFELSR ELPTNKDVCDPGNTKVMDKYTFELSRRTHL GNTKVMDKYTFELSRRTHLPEVFLSKVLEP K V M S R R 0 1 0 1 0 0 1 0 0 0 1 1 1 1 0 1 1 0 1 1 0 0 11 1 1387.6806 P02774 P02774 342 352 GC Vitamin D-binding protein yes yes 3 0.0018331 95.138 By MS/MS 9 0 1 1 8211500 8211500 0 0 14809 397 15547 65046 54841 54841 1 4609200 0 0 VMEETLSYLLGR KYFSMTEVDRLGIGKVMEETLSYLLGRKKR IGKVMEETLSYLLGRKKRPIHLSFDVDGLD K V M G R K 0 1 0 0 0 0 2 1 0 0 3 0 1 0 0 1 1 0 1 1 0 0 12 0 1409.7225 P05089 P05089 211 222 ARG1 Arginase-1 yes yes 2 1.0456E-07 130.66 By MS/MS By MS/MS 5.58 2.84 2 1 1 1 1 2 2 2 7 5 55834000 42414000 0 13419000 14810 422 15548 65047;65048;65049;65050;65051;65052;65053;65054;65055;65056;65057;65058 54842;54843;54844;54845;54846;54847 54844 5 33191000 0 2791900 VMEIVDADEK ASITSEVFNKFFKERVMEIVDADEKVRHSK FFKERVMEIVDADEKVRHSKLAESVEKAIE R V M E K V 1 0 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 2 0 0 10 0 1147.5431 Q9Y5B9 Q9Y5B9 202 211 SUPT16H FACT complex subunit SPT16 yes yes 2 0.00078205 113.62 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 65196000 0 6969300 58227000 14811 2296 15549 65059;65060;65061 54848;54849;54850 54848 3 0 3138400 12772000 VMEIVDADEKVR ASITSEVFNKFFKERVMEIVDADEKVRHSK KERVMEIVDADEKVRHSKLAESVEKAIEEK R V M V R H 1 1 0 2 0 0 2 0 0 1 0 1 1 0 0 0 0 0 0 3 0 0 12 1 1402.7126 Q9Y5B9 Q9Y5B9 202 213 SUPT16H FACT complex subunit SPT16 yes yes 2;3 4.151E-06 150.61 By MS/MS By MS/MS 1.75 0.433 1 3 2 2 60959000 0 21306000 39653000 14812 2296 15550 65062;65063;65064;65065 54851;54852;54853;54854 54854 4 0 9594200 8543900 VMEKPSPLLVGR ______________________________ ______________________________ M V M G R E 0 1 0 0 0 0 1 1 0 0 2 1 1 0 2 1 0 0 0 2 0 0 12 1 1324.7537 Q9UN86;Q13283 Q13283 2 13 G3BP2;G3BP1 Ras GTPase-activating protein-binding protein 2;Ras GTPase-activating protein-binding protein 1 no no 3 0.0011222 103.44 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 164270000 0 93990000 70280000 14813 1236;2203 15551 65066;65067;65068;65069 54855;54856;54857;54858 54857 4 0 31949000 12294000 VMENSSGTPDILTR MSRSNVQPTAAPGQKVMENSSGTPDILTRH KVMENSSGTPDILTRHFTIDDFEIGRPLGK K V M T R H 0 1 1 1 0 0 1 1 0 1 1 0 1 0 1 2 2 0 0 1 0 0 14 0 1518.7348 Q96GD4 Q96GD4 57 70 AURKB Aurora kinase B yes yes 2 2.8525E-17 190.26 By matching By MS/MS 6.33 0.471 2 1 1 2 29344000 0 6828200 22515000 14814 1790 15552 65070;65071;65072 54859 54859 1 0 2363700 3518100 VMEYINR QNLLILTAIKADRTRVMEYINRLDNYDAPD AIKADRTRVMEYINRLDNYDAPDIANIAIS R V M N R L 0 1 1 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 1 0 0 7 0 923.45349 Q00610 Q00610 1040 1046 CLTC Clathrin heavy chain 1 yes yes 2 0.0036074 129.96 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 60858000 0 19834000 41024000 14815 1125 15553 65073;65074;65075;65076;65077 54860;54861;54862;54863 54862 3 0 9337100 8797700 VMFEVWR KTLAESDEGKLHVLRVMFEVWRNHPQMIAV EGKLHVLRVMFEVWRNHPQMIAVLVDKMIR R V M W R N 0 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 1 0 2 0 0 7 0 965.47931 Q09161 Q09161 589 595 NCBP1 Nuclear cap-binding protein subunit 1 yes yes 2 0.011521 118.01 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 12832000 0 3102400 9729900 14816 1189 15554 65078;65079;65080 54864;54865 54865 2 0 1322500 1948300 VMGNQVFPEVTR ASLLSNMSRHPLLHRVMGNQVFPEVTRLLT LHRVMGNQVFPEVTRLLTSHTGNTSNSEDI R V M T R L 0 1 1 0 0 1 1 1 0 0 0 0 1 1 1 0 1 0 0 3 0 0 12 0 1375.6918 Q13835 Q13835 631 642 PKP1 Plakophilin-1 yes yes 2 0.00049179 125.97 By MS/MS By matching By matching 2 0.707 1 2 1 2 1 1 21166000 13052000 4214300 3899200 14817 1270 15555 65081;65082;65083;65084 54866 54866 1 15060000 1897800 756250 VMGTFSTVTSTVK AVQLCESVANKLEGKVMGTFSTVTSTVKQA GKVMGTFSTVTSTVKQALQESLVQILQPQR K V M V K Q 0 0 0 0 0 0 0 1 0 0 0 1 1 1 0 2 4 0 0 3 0 0 13 0 1356.6959 P08240 P08240 374 386 SRPR Signal recognition particle receptor subunit alpha yes yes 2 0.005965 97.734 By MS/MS 2.5 0.5 1 1 2 5512500 0 5512500 0 14818 470 15556 65085;65086 54867 54867 1 0 2386800 0 VMIPVPAGVEDGQTVR CVVCRGAGQAKQKKRVMIPVPAGVEDGQTV MIPVPAGVEDGQTVRMPVGKREIFITFRVQ R V M V R M 1 1 0 1 0 1 1 2 0 1 0 0 1 0 2 0 1 0 0 4 0 0 16 0 1666.8712 Q96EY1 Q96EY1 304 319 DNAJA3 DnaJ homolog subfamily A member 3, mitochondrial yes yes 2;3 2.1491E-06 161.93 By MS/MS By MS/MS 5.67 0.745 3 2 1 2 4 125770000 0 26635000 99134000 14819 1778 15557 65087;65088;65089;65090;65091;65092 54868;54869;54870;54871;54872;54873 54871 6 0 7200200 13987000 VMITHGVDVTAQDTTGHSALHLAAK AFHLAAAKGHVECLRVMITHGVDVTAQDTT AQDTTGHSALHLAAKNSHHECIRKLLQSKC R V M A K N 4 0 0 2 0 1 0 2 3 1 2 1 1 0 0 1 4 0 0 3 0 0 25 0 2572.3068 Q9P0K7 Q9P0K7 71 95 RAI14 Ankycorbin yes yes 5 0.072208 15.055 By MS/MS 2 0 1 1 8331000 0 0 8331000 14820 2115 15558 65093 54874 54874 1 0 0 1882600 VMLEDGR LRKEFSPFGSITSAKVMLEDGRSKGFGFVC FGSITSAKVMLEDGRSKGFGFVCFSSPEEA K V M G R S 0 1 0 1 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 1 0 0 7 0 818.39564 Q13310 Q13310 325 331 PABPC4 Polyadenylate-binding protein 4 yes yes 2 0.026313 95.793 By MS/MS 3 0 1 1 15846000 0 0 15846000 14821 1237 15559 65094 54875 54875 1 0 0 3073300 VMLESFIDTQK LRDYVIEDDVNMAIRVMLESFIDTQKFSVM MAIRVMLESFIDTQKFSVMRSMRKTFARYL R V M Q K F 0 0 0 1 0 1 1 0 0 1 1 1 1 1 0 1 1 0 0 1 0 0 11 0 1309.6588 P49736 P49736 797 807 MCM2 DNA replication licensing factor MCM2 yes yes 2 0.0018409 102.06 By MS/MS 2 0 1 1 0 0 0 0 14822 864 15560 65095 54876 54876 1 0 0 0 VMLGETNPADSKPGTIR VAMVWEGLNVVKTGRVMLGETNPADSKPGT LGETNPADSKPGTIRGDFCIQVGRNIIHGS R V M I R G 1 1 1 1 0 0 1 2 0 1 1 1 1 0 2 1 2 0 0 1 0 0 17 1 1784.9091 P22392;O60361;P15531 P15531 89 105 NME2;NME2P1;NME1 Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A no no 2;3 1.6633E-06 131.86 By MS/MS By MS/MS By MS/MS 8.4 1.02 2 4 2 2 1 4 5 73784000 1397600 24191000 48195000 14823 631;570 15561 65096;65097;65098;65099;65100;65101;65102;65103;65104;65105 54877;54878;54879;54880;54881;54882;54883;54884 54882 8 2546200 11579000 16068000 VMLIGTTSRPQLAEMR KDLTKALRLLTPGDRVMLIGTTSRPQLAEM MLIGTTSRPQLAEMRGLCRVYERILFMPRP R V M M R G 1 2 0 0 0 1 1 1 0 1 2 0 2 0 1 1 2 0 0 1 0 0 16 1 1801.9543 A6NCM1 A6NCM1 667 682 IQCA1L IQ and AAA domain-containing protein 1-like yes yes 2 0.014853 71.889 By MS/MS 8 0 1 1 1293100 1293100 0 0 14824 12 15562 65106 54885 54885 0;1 1 1110200 0 0 VMLLQQGLNDR LAEKVHMRAMSIAQRVMLLQQGLNDRSDAV IAQRVMLLQQGLNDRSDAVKQAMQKHLLQG R V M D R S 0 1 1 1 0 2 0 1 0 0 3 0 1 0 0 0 0 0 0 1 0 0 11 0 1285.6813 Q9BPX3 Q9BPX3 247 257 NCAPG Condensin complex subunit 3 yes yes 2 2.0823E-07 160.59 By MS/MS 2 0 1 1 11335000 0 0 11335000 14825 1873 15563 65107 54886 54886 1 0 0 2561400 VMLMASPSMEDLYHK AILDPPDADHLYSAKVMLMASPSMEDLYHK VMLMASPSMEDLYHKSCALAEDPQELRDGF K V M H K S 1 0 0 1 0 0 1 0 1 0 2 1 3 0 1 2 0 0 1 1 0 0 15 0 1750.8092 Q8IX12 Q8IX12 449 463 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 3 0.014442 55.186 By MS/MS 2 0 1 1 10528000 0 0 10528000 14826 1579 15564 65108 54887 54887 1 0 0 2379100 VMLTQFAEGR TLWGSFEISNVRLARVMLTQFAEGRLEDQL VRLARVMLTQFAEGRLEDQLDKYDHWADRF R V M G R L 1 1 0 0 0 1 1 1 0 0 1 0 1 1 0 0 1 0 0 1 0 0 10 0 1150.5805 Q96RR1 Q96RR1 454 463 PEO1 Twinkle protein, mitochondrial yes yes 2 0.014486 86.136 By MS/MS By matching 3.5 0.5 1 1 1 1 21467000 0 2765500 18701000 14827 1830 15565 65109;65110 54888 54888 1 0 1178900 3054600 VMLTVFK IQILQLMANSTQMKKVMLTVFKHNHGAYQF ANSTQMKKVMLTVFKHNHGAYQFFREALQF K V M F K H 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 2 0 0 7 0 836.483 Q86UY6 Q86UY6 171 177 NAA40 N-alpha-acetyltransferase 40 yes yes 2 0.034912 88.35 By matching By MS/MS 7 0 2 1 1 52366000 862560 0 51503000 14828 1550 15566 65111;65112 54889 54889 1 1859000 0 9138900 VMLYPSR FRSNLPAKAIGHRIRVMLYPSRI_______ KAIGHRIRVMLYPSRI______________ R V M S R I 0 1 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0 0 1 1 0 0 7 0 864.45276 P18077 P18077 103 109 RPL35A 60S ribosomal protein L35a yes yes 2 0.0047267 128.38 By MS/MS By MS/MS 8.67 0.471 1 2 2 1 118530000 0 64602000 53930000 14829 593 15567 65113;65114;65115 54890;54891;54892;54893 54892 4 0 49048000 17228000 VMLYPSRI FRSNLPAKAIGHRIRVMLYPSRI_______ AIGHRIRVMLYPSRI_______________ R V M R I - 0 1 0 0 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 1 0 0 8 1 977.53682 P18077 P18077 103 110 RPL35A 60S ribosomal protein L35a yes yes 2 0.0019034 120.65 By MS/MS 9 0 1 1 66297000 0 0 66297000 14830 593 15568 65116 54894 54894 1 0 0 21178000 VMMVALGR RNAWKHSRMFFGKNKVMMVALGRSPSDEYK MFFGKNKVMMVALGRSPSDEYKDNLHQVSK K V M G R S 1 1 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 0 0 2 0 0 8 0 875.47211 Q9UKD2 Q9UKD2 72 79 MRTO4 mRNA turnover protein 4 homolog yes yes 2 2.1017E-10 132.94 By MS/MS By MS/MS 7 0 2 1 1 11324000 0 11324000 0 14831 2177 15569 65117;65118 54895;54896 54896 2 0 6502200 0 VMPNAIVQSVGVSSGK LSNWTMEKVRREGVKVMPNAIVQSVGVSSG MPNAIVQSVGVSSGKLLIKLKDGRKVETDH K V M G K L 1 0 1 0 0 1 0 2 0 1 0 1 1 0 1 3 0 0 0 4 0 0 16 0 1571.8341 O95831 O95831 363 378 AIFM1 Apoptosis-inducing factor 1, mitochondrial yes yes 2 0.0098547 72.891 By MS/MS 3 0 1 1 4717100 0 0 4717100 14832 345 15570 65119 54897 54897 1 0 0 914900 VMQQQQQTTQQQLPQK FKEGKAQEPSAAIPKVMQQQQQTTQQQLPQ MQQQQQTTQQQLPQKVQAQVIQETIVPKEP K V M Q K V 0 0 0 0 0 9 0 0 0 0 1 1 1 0 1 0 2 0 0 1 0 0 16 0 1940.9738 Q15459 Q15459 116 131 SF3A1 Splicing factor 3A subunit 1 yes yes 2;3 4.8757E-05 113.69 By matching By MS/MS 1.6 0.49 2 3 1 4 16947000 3343200 0 13604000 14833 1369 15571 65120;65121;65122;65123;65124 54898;54899;54900 54899 3 4028200 0 2999200 VMQVLNADAIVVK PTANLDQKDKQFVAKVMQVLNADAIVVKLN AKVMQVLNADAIVVKLNSGDYKTIHLSSIR K V M V K L 2 0 1 1 0 1 0 0 0 1 1 1 1 0 0 0 0 0 0 4 0 0 13 0 1398.7905 Q7KZF4 Q7KZF4 347 359 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.00115 112.83 By matching By MS/MS By MS/MS 2.5 0.866 3 1 1 2 1 57573000 1182300 17507000 38883000 14834 1518 15572 65125;65126;65127;65128 54901;54902 54901 2 1424500 7653200 8786900 VMSDFAINQEQK ASAFSLPICEGLTQRVMSDFAINQEQKEAL TQRVMSDFAINQEQKEALSNLTALTSDSDT R V M Q K E 1 0 1 1 0 2 1 0 0 1 0 1 1 1 0 1 0 0 0 1 0 0 12 0 1408.6657 Q96EY7 Q96EY7 649 660 PTCD3 Pentatricopeptide repeat domain-containing protein 3, mitochondrial yes yes 2 0.054525 68.76 By MS/MS 3 0 1 1 1369700 0 1369700 0 14835 1780 15573 65129 54903 54903 0 0 583890 0 VMTIAPGLFGTPLLTSLPEK MTLPIARDLAPIGIRVMTIAPGLFGTPLLT PGLFGTPLLTSLPEKVCNFLASQVPFPSRL R V M E K V 1 0 0 0 0 0 1 2 0 1 4 1 1 1 3 1 3 0 0 1 0 0 20 0 2084.1591 Q99714 Q99714 193 212 HSD17B10 3-hydroxyacyl-CoA dehydrogenase type-2 yes yes 2;3 3.3578E-13 139.89 By matching By MS/MS 7 0 5 2 3 6654000 0 1292800 5361200 14836 1859 15574;15575 65130;65131;65132;65133;65134 54904;54905;54906 54906 672 3 0 742350 951300 VMTVNYNTHGELGEGAR QYLSQGNVVFKDSVKVMTVNYNTHGELGEG TVNYNTHGELGEGARKFVFFNIPQIQYKNP K V M A R K 1 1 2 0 0 0 2 3 1 0 1 0 1 0 0 0 2 0 1 2 0 0 17 0 1846.8632 P82663 P82663 29 45 MRPS25 28S ribosomal protein S25, mitochondrial yes yes 2;3 1.4492E-06 127.56 By MS/MS By MS/MS 7 0 3 1 2 28840000 0 3575500 25265000 14837 1097 15576 65135;65136;65137 54907;54908;54909 54909 3 0 2053100 4483100 VMVAPISGSVTTGTK SPTSSTTSTISPAQKVMVAPISGSVTTGTK VMVAPISGSVTTGTKMVLTTKVGSPATVTF K V M T K M 1 0 0 0 0 0 0 2 0 1 0 1 1 0 1 2 3 0 0 3 0 0 15 0 1446.7752 Q12830 Q12830 2075 2089 BPTF Nucleosome-remodeling factor subunit BPTF yes yes 2 0.0049775 83.617 By MS/MS 1 0 1 1 9009600 0 0 9009600 14838 1203 15577 65138 54910 54910 1 0 0 1941300 VMVDSLVEQEIQTSVATLDETEELPR PVCDTWEDTVWAYFRVMVDSLVEQEIQTSV QTSVATLDETEELPREYLGANWTLEKVFEE R V M P R E 1 1 0 2 0 2 5 0 0 1 3 0 1 0 1 2 3 0 0 4 0 0 26 0 2930.443 P57740 P57740 455 480 NUP107 Nuclear pore complex protein Nup107 yes yes 3 1.7915E-52 198.64 By MS/MS 1.5 0.5 1 1 2 21735000 0 0 21735000 14839 956 15578 65139;65140 54911 54911 1 0 0 4898900 VMVLDFVTPTPLGTR GGLAAAKEAAQYGKKVMVLDFVTPTPLGTR VMVLDFVTPTPLGTRWGLGGTCVNVGCIPK K V M T R W 0 1 0 1 0 0 0 1 0 0 2 0 1 1 2 0 3 0 0 3 0 0 15 0 1644.8909 Q16881 Q16881 188 202 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes yes 2 0.00035441 117.94 By MS/MS By MS/MS 4 0 2 1 1 10803000 0 5147700 5654800 14840 1402 15579 65141;65142 54912;54913 54913 2 0 1708300 923620 VMVQPINLIFR ______________________________ KVQKVMVQPINLIFRYLQNRSRIQVWLYEQ K V M F R Y 0 1 1 0 0 1 0 0 0 2 1 0 1 1 1 0 0 0 0 2 0 0 11 0 1328.7639 P62304 P62304 13 23 SNRPE Small nuclear ribonucleoprotein E yes yes 2 1.3993E-13 179.73 By MS/MS By MS/MS By MS/MS 8.46 2.41 1 2 1 3 6 2 4 7 1517200000 32566000 415790000 1068800000 14841 1018 15580;15581 65143;65144;65145;65146;65147;65148;65149;65150;65151;65152;65153;65154;65155 54914;54915;54916;54917;54918;54919;54920;54921;54922;54923;54924;54925;54926;54927;54928;54929;54930;54931;54932;54933;54934 54934 486 21 59329000 2075200000 815700000 VNALLPTETFIPVIR FWRALLSKAYDLLDKVNALLPTETFIPVIR VNALLPTETFIPVIRGLVGNPLPSVRRKAL K V N I R G 1 1 1 0 0 0 1 0 0 2 2 0 0 1 2 0 2 0 0 2 0 0 15 0 1681.9767 Q9H583 Q9H583 1591 1605 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.00033325 134.2 By MS/MS By MS/MS 1 0 2 1 1 15968000 0 4881800 11086000 14842 1984 15582 65156;65157 54935;54936 54936 2 0 2386100 2388700 VNATGPQFVSGVIVK NEKTANREECRTQEKVNATGPQFVSGVIVK VNATGPQFVSGVIVKIISTEPLPGRKQVRD K V N V K I 1 0 1 0 0 1 0 2 0 1 0 1 0 1 1 1 1 0 0 4 0 0 15 0 1514.8457 Q4G0J3 Q4G0J3 444 458 LARP7 La-related protein 7 yes yes 2 0.0063868 80.69 By MS/MS 3 0 1 1 5892300 0 5892300 0 14843 1418 15583 65158 54937 54937 1 0 2511900 0 VNCSFYFK MAEYLASIFGTEKDKVNCSFYFKIGACRHG FGTEKDKVNCSFYFKIGACRHGDRCSRLHN K V N F K I 0 0 1 0 1 0 0 0 0 0 0 1 0 2 0 1 0 0 1 1 0 0 8 0 1063.4797 P0DN76;Q01081;Q8WU68 P0DN76 16 23 U2AF1;U2AF1L4 Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit yes no 2 0.033452 77.058 By matching By MS/MS 6 0 2 1 1 11822000 1460100 0 10362000 14844 502 15584 65159;65160 54938 54938 1 1944100 0 1550200 VNDFLAEIFK EKGASRIDEKSSKAKVNDFLAEIFKKIGSK SSKAKVNDFLAEIFKKIGSKENTKEGLAEL K V N F K K 1 0 1 1 0 0 1 0 0 1 1 1 0 2 0 0 0 0 0 1 0 0 10 0 1194.6285 Q14008 Q14008 1829 1838 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.002006 107.15 By MS/MS 1 0 1 1 8642400 0 0 8642400 14845 1279 15585 65161 54939 54939 1 0 0 1862100 VNDFLAEIFKK EKGASRIDEKSSKAKVNDFLAEIFKKIGSK SKAKVNDFLAEIFKKIGSKENTKEGLAELY K V N K K I 1 0 1 1 0 0 1 0 0 1 1 2 0 2 0 0 0 0 0 1 0 0 11 1 1322.7234 Q14008 Q14008 1829 1839 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.023397 59.739 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 14030000 0 1278100 12752000 14846 1279 15586 65162;65163;65164 54940;54941;54942 54941 3 0 624720 2747700 VNDTIQIDLETGK THDARTIRYPDPLIKVNDTIQIDLETGKIT IKVNDTIQIDLETGKITDFIKFDTGNLCMV K V N G K I 0 0 1 2 0 1 1 1 0 2 1 1 0 0 0 0 2 0 0 1 0 0 13 0 1444.7409 P62701 P62701 156 168 RPS4X 40S ribosomal protein S4, X isoform yes yes 2 0.00030422 129.82 By MS/MS By MS/MS 6 0 2 1 1 67549000 0 14080000 53469000 14847 1029 15587 65165;65166 54943;54944 54943 1 0 4874100 7999500 VNEVNQFAAK KFEEFQTDMAAHEERVNEVNQFAAKLIQEQ AHEERVNEVNQFAAKLIQEQHPEEELIKTK R V N A K L 2 0 2 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 2 0 0 10 0 1118.572 Q13813 Q13813 205 214 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 0.00059562 133.68 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 41048000 0 18661000 22387000 14848 1268 15588 65167;65168;65169 54945;54946 54946 2 0 9121000 4844300 VNEYVDAR ADEDMWDETELGLYKVNEYVDARDTNMGAW TELGLYKVNEYVDARDTNMGAWFEAQVVRV K V N A R D 1 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 8 0 964.46141 Q96T88 Q96T88 137 144 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.035794 76.478 By MS/MS By matching 2.5 0.5 1 1 1 1 15831000 0 4013100 11818000 14849 1841 15589 65170;65171 54947 54947 1 0 1807200 2292100 VNFAHFPR FKLTELHLEHNDLVKVNFAHFPRLISLHSL EHNDLVKVNFAHFPRLISLHSLCLRRNKVA K V N P R L 1 1 1 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 1 0 0 8 0 986.50863 Q86UE6 Q86UE6 224 231 LRRTM1 Leucine-rich repeat transmembrane neuronal protein 1 yes yes 2 0.0033897 105.22 By MS/MS By matching By matching 5.29 1.28 1 1 1 3 1 4 1 2 224770000 218040000 1750000 4983500 14850 1547 15590 65172;65173;65174;65175;65176;65177;65178 54948;54949 54948 2 184320000 605780 816560 VNFAMNVGK KDPVQEAWAEDVDLRVNFAMNVGKARGFFK EDVDLRVNFAMNVGKARGFFKKGDVVIVLT R V N G K A 1 0 2 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 2 0 0 9 0 978.49569 P14618 P14618 490 498 PKM Pyruvate kinase PKM yes yes 2 0.00047804 133.6 By MS/MS By MS/MS 4 0.707 1 2 1 2 2 36560000 0 11084000 25476000 14851 559 15591 65179;65180;65181;65182 54950;54951 54950 2 0 3743200 3963500 VNFPENGFLSPDK YRRPYEKGRLIIEFKVNFPENGFLSPDKLS FKVNFPENGFLSPDKLSLLEKLLPERKEVE K V N D K L 0 0 2 1 0 0 1 1 0 0 1 1 0 2 2 1 0 0 0 1 0 0 13 0 1462.7092 P31689 P31689 326 338 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 2 0.00032725 140.07 By MS/MS 5 0 1 1 13296000 0 0 13296000 14852 720 15592 65183 54952 54952 1 0 0 1854500 VNFTVDQIR ______________________________ ______________________________ M V N I R A 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 2 0 0 9 0 1090.5771 P13639 P13639 2 10 EEF2 Elongation factor 2 yes yes 2 9.5671E-46 170.66 By MS/MS By MS/MS By MS/MS 6.3 3.23 1 2 3 1 1 2 5 2 3 71597000 25441000 31863000 14294000 14853 547 15593 65184;65185;65186;65187;65188;65189;65190;65191;65192;65193 54953;54954;54955;54956;54957;54958 54956 6 26163000 14905000 17796000 VNGIDYQLYFPITQDR KAEAIVYKHGSGRIKVNGIDYQLYFPITQD NGIDYQLYFPITQDREQLMFPFHFVDRLGK K V N D R E 0 1 1 2 0 2 0 1 0 2 1 0 0 1 1 0 1 0 2 1 0 0 16 0 1940.9632 P82933 P82933 295 310 MRPS9 28S ribosomal protein S9, mitochondrial yes yes 2 0.009335 73.624 By MS/MS 5 0 1 1 1493300 0 0 1493300 14854 1104 15594 65194 54959 54959 1 0 0 208280 VNGRPLEMIEPR ATAVAHCKRGNGLIKVNGRPLEMIEPRTLQ LIKVNGRPLEMIEPRTLQYKLLEPVLLLGK K V N P R T 0 2 1 0 0 0 2 1 0 1 1 0 1 0 2 0 0 0 0 1 0 0 12 1 1409.7449 P62249 P62249 34 45 RPS16 40S ribosomal protein S16 yes yes 3 0.0070876 78.157 By MS/MS By MS/MS 8 0 2 1 1 36480000 0 14930000 21550000 14855 1010 15595 65195;65196 54960;54961 54960 2 0 6792700 3303800 VNIAFNYDMPEDSDTYLHR LVATNLFGRGMDIERVNIAFNYDMPEDSDT FNYDMPEDSDTYLHRVARAGRFGTKGLAIT R V N H R V 1 1 2 3 0 0 1 0 1 1 1 0 1 1 1 1 1 0 2 1 0 0 19 0 2299.0215 Q13838 Q13838 356 374 DDX39B Spliceosome RNA helicase DDX39B yes yes 2;3 1.3104E-137 281.32 By MS/MS By MS/MS By MS/MS 4.67 0.471 2 4 1 1 4 77508000 7389200 5874100 64244000 14856 1271 15596 65197;65198;65199;65200;65201;65202 54962;54963;54964;54965;54966 54966 5 5919700 1514200 9497400 VNIIGEVVDQGSTNLK RGLSFSEATASNLVKVNIIGEVVDQGSTNL NIIGEVVDQGSTNLKIDHTGFSPHAAIYST K V N L K I 0 0 2 1 0 1 1 2 0 2 1 1 0 0 0 1 1 0 0 3 0 0 16 0 1684.8996 Q9UEY8 Q9UEY8 192 207 ADD3 Gamma-adducin yes yes 2 1.7187E-12 177.1 By MS/MS 3 0 1 1 7129200 0 0 7129200 14857 2138 15597 65203 54967 54967 1 0 0 1382700 VNIISVTNK FSKDGTLFAWGNGEKVNIISVTNKGLLHSF WGNGEKVNIISVTNKGLLHSFDLLKAVCLE K V N N K G 0 0 2 0 0 0 0 0 0 2 0 1 0 0 0 1 1 0 0 2 0 0 9 0 986.57605 Q9BY44 Q9BY44 59 67 EIF2A Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed yes yes 2 0.01377 90.709 By MS/MS 3.5 0.5 1 1 2 2938300 0 2938300 0 14858 1932 15598 65204;65205 54968;54969 54968 2 0 1252600 0 VNILEVASGAVLR LDQTGQHLFCVCGTRVNILEVASGAVLRSL TRVNILEVASGAVLRSLEQEDQEDITAFDL R V N L R S 2 1 1 0 0 0 1 1 0 1 2 0 0 0 0 1 0 0 0 3 0 0 13 0 1339.7823 Q12788 Q12788 47 59 TBL3 Transducin beta-like protein 3 yes yes 2 0.0013247 110.66 By MS/MS 3 0 1 1 5191900 0 5191900 0 14859 1197 15599 65206 54970 54970 1 0 2213300 0 VNILFDFVK VLTLSDDLERTIEERVNILFDFVKKKKEEG RTIEERVNILFDFVKKKKEEGVIDSSDKEI R V N V K K 0 0 1 1 0 0 0 0 0 1 1 1 0 2 0 0 0 0 0 2 0 0 9 0 1093.6172 P55010 P55010 240 248 EIF5 Eukaryotic translation initiation factor 5 yes yes 2 0.055875 69.812 By MS/MS 5.5 1.12 1 1 1 1 4 14518000 0 0 14518000 14860 933 15600 65207;65208;65209;65210 54971 54971 1 0 0 2337300 VNISNISIIIQELLQENIVR SWEALKKSINGLINKVNISNISIIIQELLQ ISIIIQELLQENIVRGRGLLSRSVLQAQSA K V N V R G 0 1 3 0 0 2 2 0 0 6 2 0 0 0 0 2 0 0 0 2 0 0 20 0 2307.3162 Q9HCG8 Q9HCG8 173 192 CWC22 Pre-mRNA-splicing factor CWC22 homolog yes yes 3 6.8886E-14 142.26 By MS/MS 2 0 1 1 851080 0 0 851080 14861 2012 15601 65211 54972 54972 1 0 0 192330 VNKPMELYYAPTK NGSFSLELVSEKYWKVNKPMELYYAPTKEH WKVNKPMELYYAPTKEHK____________ K V N T K E 1 0 1 0 0 0 1 0 0 0 1 2 1 0 2 0 1 0 2 1 0 0 13 1 1552.796 Q99496 Q99496 321 333 RNF2 E3 ubiquitin-protein ligase RING2 yes yes 3 0.028986 56.29 By MS/MS 5 0 1 1 20193000 0 0 20193000 14862 1846 15602 65212 54973 54973 1 0 0 2816500 VNLEVIKPWITK LKFAECLEKKVDMSKVNLEVIKPWITKRVT MSKVNLEVIKPWITKRVTEILGFEDDVVIE K V N T K R 0 0 1 0 0 0 1 0 0 2 1 2 0 0 1 0 1 1 0 2 0 0 12 1 1438.8548 Q8IYB3 Q8IYB3 43 54 SRRM1 Serine/arginine repetitive matrix protein 1 yes yes 2;3 0.00033071 119.34 By MS/MS By MS/MS 2.36 1.07 3 3 3 2 5 6 70368000 0 30384000 39984000 14863 1591 15603 65213;65214;65215;65216;65217;65218;65219;65220;65221;65222;65223 54974;54975;54976;54977;54978;54979;54980 54975 7 0 13787000 8432800 VNLNGVFDMTMK LSHTKILLEPESMSKVNLNGVFDMTMKIWK MSKVNLNGVFDMTMKIWKVLRYDETRTRCR K V N M K I 0 0 2 1 0 0 0 1 0 0 1 1 2 1 0 0 1 0 0 2 0 0 12 0 1367.6577 P03243;P03244 P03243 426 437 yes no 2 1.3235E-08 172.88 By MS/MS By MS/MS By MS/MS 3.62 2.17 6 4 3 4 4 2 1 2 2 12 12 682820000 3443700 248940000 430440000 14864 406 15604;15605 65224;65225;65226;65227;65228;65229;65230;65231;65232;65233;65234;65235;65236;65237;65238;65239;65240;65241;65242;65243;65244;65245;65246;65247;65248;65249 54981;54982;54983;54984;54985;54986;54987;54988;54989;54990;54991;54992;54993;54994;54995;54996;54997;54998;54999;55000;55001;55002 54985 135 22 3443700 82337000 82452000 VNMPAKPAPPTK PTSKDQVLAMLEKAKVNMPAKPAPPTKATS KAKVNMPAKPAPPTKATSKPMGGSAPAKFQ K V N T K A 2 0 1 0 0 0 0 0 0 0 0 2 1 0 4 0 1 0 0 1 0 0 12 1 1249.6853 Q14008 Q14008 1078 1089 CKAP5 Cytoskeleton-associated protein 5 yes yes 3 0.0053535 82.543 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 62417000 0 6639200 55778000 14865 1279 15606 65250;65251;65252 55003;55004;55005 55004 3 0 3245100 12105000 VNMPPAVDPAEFFVLMER RKTRHDPLAKSKIERVNMPPAVDPAEFFVL PPAVDPAEFFVLMERYQHYRQTVRALRMEF R V N E R Y 2 1 1 1 0 0 2 0 0 0 1 0 2 2 3 0 0 0 0 3 0 0 18 0 2061.0064 Q9BYN8 Q9BYN8 42 59 MRPS26 28S ribosomal protein S26, mitochondrial yes yes 2 0.0050977 71.548 By MS/MS 7 0 1 1 855540 0 0 855540 14866 1938 15607 65253 55006 55006 681 1 0 0 151810 VNNSSLIGLGYTQTLKPGIK AAKYQIDPDACFSAKVNNSSLIGLGYTQTL LIGLGYTQTLKPGIKLTLSALLDGKNVNAG K V N I K L 0 0 2 0 0 1 0 3 0 2 3 2 0 0 1 2 2 0 1 1 0 0 20 1 2102.1736 P21796 P21796 237 256 VDAC1 Voltage-dependent anion-selective channel protein 1 yes yes 3 1.7987E-05 80.975 By MS/MS By MS/MS 6 0 2 1 1 118220000 0 5508400 112710000 14867 625 15608 65254;65255 55007;55008 55007 2 0 1906800 16862000 VNNSSLIGVGYTQTLRPGVK AAKYQLDPTASISAKVNNSSLIGVGYTQTL LIGVGYTQTLRPGVKLTLSALVDGKSINAG K V N V K L 0 1 2 0 0 1 0 3 0 1 2 1 0 0 1 2 2 0 1 3 0 0 20 1 2102.1484 P45880 P45880 248 267 VDAC2 Voltage-dependent anion-selective channel protein 2 yes yes 2;3 3.3808E-38 206.63 By matching By MS/MS 6.22 2.3 1 1 2 2 1 2 1 8 203830000 0 1132100 202700000 14868 819 15609 65256;65257;65258;65259;65260;65261;65262;65263;65264 55009;55010;55011 55009 3 0 5727400 38729000 VNPALAELNLR GLTEARCKDISSALRVNPALAELNLRSNEL SALRVNPALAELNLRSNELGDVGVHCVLQG R V N L R S 2 1 2 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 11 0 1208.6877 P13489 P13489 54 64 RNH1 Ribonuclease inhibitor yes yes 2 1.2205E-09 168.74 By MS/MS By MS/MS 5 0 2 1 1 21898000 0 11169000 10729000 14869 546 15610 65265;65266 55012;55013 55012 2 0 2879000 1496400 VNPDLQVEVKPSIR MHLKGRRHRLQYKKKVNPDLQVEVKPSIRA KVNPDLQVEVKPSIRARKIQEEKMRKQMQK K V N I R A 0 1 1 1 0 1 1 0 0 1 1 1 0 0 2 1 0 0 0 3 0 0 14 1 1592.8886 Q96KR1 Q96KR1 614 627 ZFR Zinc finger RNA-binding protein yes yes 3 0.010684 65.172 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 23663000 0 5363000 18300000 14870 1806 15611 65267;65268;65269;65270 55014;55015 55015 2 0 2415000 3987000 VNPQISDEKDEDEKEEK DLAAKRRPEEKEPEKVNPQISDEKDEDEKE PQISDEKDEDEKEEKRRKTTPKEPTEKKMA K V N E K R 0 0 1 3 0 1 5 0 0 1 0 3 0 0 1 1 0 0 0 1 0 0 17 2 2030.928 P26358 P26358 307 323 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 3.3978E-06 111.06 By MS/MS 1 0 1 1 6836600 0 0 6836600 14871 667 15612 65271 55016 55016 1 0 0 1473000 VNQAIWLLCTGAR GTVRRQAVDVSPLRRVNQAIWLLCTGAREA RRVNQAIWLLCTGAREAAFRNIKTIAECLA R V N A R E 2 1 1 0 1 1 0 1 0 1 2 0 0 0 0 0 1 1 0 1 0 0 13 0 1500.7871 P46782 P46782 147 159 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2;3 1.0824E-44 217.78 By matching By MS/MS By MS/MS 6.75 0.433 1 3 1 1 2 132560000 2529900 22444000 107580000 14872 832 15613 65272;65273;65274;65275 55017;55018;55019 55018 3 3368600 12888000 19090000 VNQIGSVTESLQACK AKAVNEKSCNCLLLKVNQIGSVTESLQACK VNQIGSVTESLQACKLAQANGWGVMVSHRS K V N C K L 1 0 1 0 1 2 1 1 0 1 1 1 0 0 0 2 1 0 0 2 0 0 15 0 1632.8141 P06733 P06733 344 358 ENO1 Alpha-enolase yes yes 2 0.0002915 122.51 By MS/MS By MS/MS 6.4 2.58 2 1 1 1 2 3 44613000 10621000 0 33993000 14873 448 15614 65276;65277;65278;65279;65280 55020;55021;55022;55023 55022 4 7661800 0 15615000 VNQPASFAIR ARRLTVMSLQESGLKVNQPASFAIRLNGAK ESGLKVNQPASFAIRLNGAKGKIDAKVHSP K V N I R L 2 1 1 0 0 1 0 0 0 1 0 0 0 1 1 1 0 0 0 1 0 0 10 0 1101.5931 O75369 O75369 2302 2311 FLNB Filamin-B yes yes 2 9.448E-05 146.81 By MS/MS 1 0 1 1 6113000 0 6113000 0 14874 254 15615 65281 55024 55024 1 0 2987900 0 VNQPASFAVQLNGAR ARRLTVTSLQETGLKVNQPASFAVQLNGAR VNQPASFAVQLNGARGVIDARVHTPSGAVE K V N A R G 3 1 2 0 0 2 0 1 0 0 1 0 0 1 1 1 0 0 0 2 0 0 15 0 1570.8216 Q14315 Q14315 2423 2437 FLNC Filamin-C yes yes 2 7.3314E-05 156.48 By MS/MS By matching 1.5 0.5 1 1 1 1 6963600 0 4758900 2204700 14875 1298 15616 65282;65283 55025 55025 1 0 2326100 498210 VNQPASFAVSLNGAK ARRLTVSSLQESGLKVNQPASFAVSLNGAK VNQPASFAVSLNGAKGAIDAKVHSPSGALE K V N A K G 3 0 2 0 0 1 0 1 0 0 1 1 0 1 1 2 0 0 0 2 0 0 15 0 1501.7889 P21333 P21333 2347 2361 FLNA Filamin-A yes yes 2 0.0085911 77.593 By MS/MS 1 0 1 1 8791900 0 8791900 0 14876 623 15617 65284 55026 55026 1 0 4297400 0 VNQWTTNVVEQTLSQLTK AIESAIGGNAYQHSKVNQWTTNVVEQTLSQ WTTNVVEQTLSQLTKLGKPFKYIVTCVIMQ K V N T K L 0 0 2 0 0 3 1 0 0 0 2 1 0 0 0 1 4 1 0 3 0 0 18 0 2088.0851 P63172 P63172 39 56 DYNLT1 Dynein light chain Tctex-type 1 yes yes 2 1.1616E-05 107.14 By MS/MS 9 0 1 1 3073500 0 0 3073500 14877 1063 15618 65285 55027 55027 1 0 0 981810 VNSEQEHFLIVPFGLLYSEVTASSLVK LFGWSQLIYNHITTRVNSEQEHFLIVPFGL FGLLYSEVTASSLVKINLQGDIVDRGSTNL R V N V K I 1 0 1 0 0 1 3 1 1 1 4 1 0 2 1 4 1 0 1 4 0 0 27 0 3005.575 P35611 P35611 173 199 ADD1 Alpha-adducin yes yes 3 0.0015615 39.384 By MS/MS 2 0 1 1 9806300 0 0 9806300 14878 755 15619 65286 55028 55028 1 0 0 2216000 VNSFFSTFK VEGHLSFLEKDLRDKVNSFFSTFKEKESQD KDLRDKVNSFFSTFKEKESQDKTLSLPELE K V N F K E 0 0 1 0 0 0 0 0 0 0 0 1 0 3 0 2 1 0 0 1 0 0 9 0 1075.5338 P06727 P06727 351 359 APOA4 Apolipoprotein A-IV yes yes 2 0.0085699 90.657 By MS/MS 9 0 1 1 4119100 4119100 0 0 14879 446 15620 65287 55029 55029 1 2312100 0 0 VNSININQGSITFAGGPGR HVIETLTKTALSANRVNSININQGSITFAG NINQGSITFAGGPGRDGTIDFTPGSELLIT R V N G R D 1 1 3 0 0 1 0 4 0 3 0 0 0 1 1 2 1 0 0 1 0 0 19 0 1900.9755 O00159 O00159 1013 1031 MYO1C Unconventional myosin-Ic yes yes 2 6.3516E-31 200.76 By MS/MS By MS/MS 2 0 2 1 1 17617000 0 5586500 12030000 14880 106 15621 65288;65289 55030;55031 55030 2 0 2515700 2718600 VNSLAPGPISGTEGLR MTRHLAVEWGPQNIRVNSLAPGPISGTEGL NSLAPGPISGTEGLRRLGGPQASLSTKVTA R V N L R R 1 1 1 0 0 0 1 3 0 1 2 0 0 0 2 2 1 0 0 1 0 0 16 0 1566.8366 Q9NUI1 Q9NUI1 203 218 DECR2 Peroxisomal 2,4-dienoyl-CoA reductase yes yes 2 3.383E-05 128.68 By matching By MS/MS 6 0 2 1 1 9293900 0 1122700 8171100 14881 2058 15622 65290;65291 55032 55032 1 0 388650 1222500 VNSQSLSPYLFR DPSSLRDALSASVVKVNSQSLSPYLFRAFR VVKVNSQSLSPYLFRAFRSSLKRVEVLDEN K V N F R A 0 1 1 0 0 1 0 0 0 0 2 0 0 1 1 3 0 0 1 1 0 0 12 0 1409.7303 Q13103 Q13103 51 62 SPP2 Secreted phosphoprotein 24 yes yes 2 3.9745E-08 169.41 By MS/MS 9 0 1 1 5154100 5154100 0 0 14882 1219 15623 65292 55033 55033 1 2893000 0 0 VNTLIRPDGEK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV DVAKVNTLIRPDGEKKAYVRLAPDYDALDV K V N E K K 0 1 1 1 0 0 1 1 0 1 1 1 0 0 1 0 1 0 0 1 0 0 11 1 1240.6776 P62750 P62750 124 134 RPL23A 60S ribosomal protein L23a yes yes 2;3 9.6873E-89 251.64 By MS/MS By MS/MS 7.2 1.4 1 2 4 1 1 1 4 6 1033700000 0 231510000 802170000 14883 1031 15624 65293;65294;65295;65296;65297;65298;65299;65300;65301;65302 55034;55035;55036;55037;55038;55039;55040;55041;55042 55038 9 0 131400000 155210000 VNTLIRPDGEKK IKQAVKKLYDIDVAKVNTLIRPDGEKKAYV VAKVNTLIRPDGEKKAYVRLAPDYDALDVA K V N K K A 0 1 1 1 0 0 1 1 0 1 1 2 0 0 1 0 1 0 0 1 0 0 12 2 1368.7725 P62750 P62750 124 135 RPL23A 60S ribosomal protein L23a yes yes 2;3 3.1081E-05 163.83 By MS/MS By MS/MS 7 0 4 2 2 131720000 0 47059000 84657000 14884 1031 15625 65303;65304;65305;65306 55043;55044;55045;55046 55046 4 0 27022000 15022000 VNVDEVGGEALGR LTPEEKSAVTALWGKVNVDEVGGEALGRLL GKVNVDEVGGEALGRLLVVYPWTQRFFESF K V N G R L 1 1 1 1 0 0 2 3 0 0 1 0 0 0 0 0 0 0 0 3 0 0 13 0 1313.6575 P68871 P68871 19 31 HBB Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin yes yes 2 1.7785E-34 215.5 By MS/MS 5.44 3.02 1 1 1 1 1 1 1 1 1 9 344340000 344340000 0 0 14885 1081 15626 65307;65308;65309;65310;65311;65312;65313;65314;65315 55047;55048;55049;55050;55051;55052;55053;55054;55055 55054 9 285430000 0 0 VNVDPEDLIPK RCLDLYLCPRQRKMRVNVDPEDLIPKLPRP RKMRVNVDPEDLIPKLPRPRDLQPFPTCQA R V N P K L 0 0 1 2 0 0 1 0 0 1 1 1 0 0 2 0 0 0 0 2 0 0 11 0 1237.6554 Q14137 Q14137 381 391 BOP1 Ribosome biogenesis protein BOP1 yes yes 2 0.06214 70.908 By MS/MS 2 0 1 1 4845000 0 4845000 0 14886 1283 15627 65316 55056 55056 1 0 2181800 0 VNVEAPDVNLEGLGGK HMTLPKGDISISGPKVNVEAPDVNLEGLGG NVEAPDVNLEGLGGKLKGPDVKLPDMSVKT K V N G K L 1 0 2 1 0 0 2 3 0 0 2 1 0 0 1 0 0 0 0 3 0 0 16 0 1609.8312 Q09666 Q09666 664 679 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 3.4161E-05 127.71 By MS/MS By matching 1.5 0.5 1 1 1 1 8106200 0 4266900 3839300 14887 1190 15628 65317;65318 55057 55057 1 0 2085600 867600 VNVTVDYIRPASPATETVPAFSER FEAREFLRKKLIGKKVNVTVDYIRPASPAT PASPATETVPAFSERTCATVTIGGINIAEA K V N E R T 3 2 1 1 0 0 2 0 0 1 0 0 0 1 3 2 3 0 1 4 0 0 24 1 2618.334 Q7KZF4 Q7KZF4 415 438 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 1.087E-30 184.26 By MS/MS By MS/MS 2 0 2 1 1 24624000 0 9541100 15083000 14888 1518 15629 65319;65320 55058;55059 55059 2 0 4296500 3408500 VNWTPEINKEHLLQGLLPDVQVPTSVK EREINITSALAEKIKVNWTPEINKEHLLQG LQGLLPDVQVPTSVKDMRYCQVSFQDDHVS K V N V K D 0 0 2 1 0 2 2 1 1 1 4 2 0 0 3 1 2 1 0 4 0 0 27 1 3053.655 A6NHR9 A6NHR9 1093 1119 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 4 8.1294E-05 51.22 By MS/MS 1 0 1 1 10055000 0 0 10055000 14889 15 15630 65321 55060 55060 1 0 0 2166400 VNYDTTESK PNAQGDAFKTLFVARVNYDTTESKLRREFE TLFVARVNYDTTESKLRREFEVYGPIKRIH R V N S K L 0 0 1 1 0 0 1 0 0 0 0 1 0 0 0 1 2 0 1 1 0 0 9 0 1055.4771 P08621 P08621 110 118 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 2 0.00299 101.64 By MS/MS 5 0.816 1 1 1 3 2836600 0 2836600 0 14890 474 15631 65322;65323;65324 55061;55062 55062 2 0 838720 0 VNYGAYINDFK KAGATLDLLVENMGRVNYGAYINDFKGLVS NMGRVNYGAYINDFKGLVSNLTLSSNILTD R V N F K G 1 0 2 1 0 0 0 1 0 1 0 1 0 1 0 0 0 0 2 1 0 0 11 0 1302.6245 P16278 P16278 483 493 GLB1 Beta-galactosidase yes yes 2 0.027578 79.974 By MS/MS 3 0 1 1 5142300 0 0 5142300 14891 576 15632 65325 55063 55063 1 0 0 997350 VPAFLDLFMQSLFKPGAR KMFTSMDPPPVELIRVPAFLDLFMQSLFKP FLDLFMQSLFKPGARINQDHKHKYIHILAY R V P A R I 2 1 0 1 0 1 0 1 0 0 3 1 1 3 2 1 0 0 0 1 0 0 18 1 2036.0917 Q8IXH7 Q8IXH7 330 347 NELFCD Negative elongation factor C/D yes yes 3 0.0062599 56.121 By MS/MS 3.5 0.5 1 1 2 1829600 0 0 1829600 14892 1581 15633 65326;65327 55064 55064 1 0 0 326130 VPAGNWVLIEGVDQPIVK RLWISVARYHIEVNRVPAGNWVLIEGVDQP GNWVLIEGVDQPIVKTATITEPRGNEEAQI R V P V K T 1 0 1 1 0 1 1 2 0 2 1 1 0 0 2 0 0 1 0 4 0 0 18 0 1933.0673 Q15029 Q15029 544 561 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2;3 2.4138E-12 170.79 By MS/MS By MS/MS 2.78 0.786 4 3 2 3 6 120860000 0 29403000 91460000 14893 1335 15634 65328;65329;65330;65331;65332;65333;65334;65335;65336 55065;55066;55067;55068;55069;55070;55071;55072 55065 8 0 13203000 19785000 VPAINVNDSVTK GVHNLYKMMANGILKVPAINVNDSVTKSKF ILKVPAINVNDSVTKSKFDNLYGCRESLID K V P T K S 1 0 2 1 0 0 0 0 0 1 0 1 0 0 1 1 1 0 0 3 0 0 12 0 1255.6772 P23526 P23526 175 186 AHCY Adenosylhomocysteinase yes yes 2 2.0083E-45 219.5 By MS/MS By MS/MS By matching 5.5 0.5 2 2 1 2 1 26799000 10107000 12152000 4539600 14894 643 15635 65337;65338;65339;65340 55073;55074;55075 55074 3 8097300 3319800 679180 VPAPFKPITR INRSMDPKNMFAIWRVPAPFKPITRKSVGH FAIWRVPAPFKPITRKSVGHRMGGGKGAID R V P T R K 1 1 0 0 0 0 0 0 0 1 0 1 0 1 3 0 1 0 0 1 0 0 10 1 1124.6706 Q9NX20 Q9NX20 124 133 MRPL16 39S ribosomal protein L16, mitochondrial yes yes 2 0.053764 93.701 By matching By MS/MS 7 0 2 1 1 14129000 0 4093200 10036000 14895 2083 15636 65341;65342 55076 55076 1 0 2350300 1780800 VPAPVTMDSFFFGCELSGHTR SQESRTRAGGVGGLRVPAPVTMDSFFFGCE MDSFFFGCELSGHTRSFTFKVEEEDDAEHV R V P T R S 1 1 0 1 1 0 1 2 1 0 1 0 1 3 2 2 2 0 0 2 0 0 21 0 2354.0824 O75607 O75607 28 48 NPM3 Nucleoplasmin-3 yes yes 3 8.1756E-16 161.22 By MS/MS 7.5 0.5 1 1 2 25271000 0 0 25271000 14896 274 15637 65343;65344 55077 55077 1 0 0 4320600 VPDESEVVVER YLKSDNMIRITAVCKVPDESEVVVERDIIL AVCKVPDESEVVVERDIILDNPTLTLEVLN K V P E R D 0 1 0 1 0 0 3 0 0 0 0 0 0 0 1 1 0 0 0 4 0 0 11 0 1256.6248 Q08188 Q08188 578 588 TGM3 Protein-glutamine gamma-glutamyltransferase E;Protein-glutamine gamma-glutamyltransferase E 50 kDa catalytic chain;Protein-glutamine gamma-glutamyltransferase E 27 kDa non-catalytic chain yes yes 2 0.00014465 139.32 By MS/MS By matching 7.2 3.19 1 2 1 1 2 3 21630000 16321000 0 5309600 14897 1181 15638 65345;65346;65347;65348;65349 55078;55079 55078 2 15669000 0 7052900 VPDGMVGFIIGR MHQQQSRSVMTEEYKVPDGMVGFIIGRGGE EYKVPDGMVGFIIGRGGEQISRIQQESGCK K V P G R G 0 1 0 1 0 0 0 3 0 2 0 0 1 1 1 0 0 0 0 2 0 0 12 0 1259.6696 Q96AE4 Q96AE4 107 118 FUBP1 Far upstream element-binding protein 1 yes yes 2 0.047431 65.535 By MS/MS 3 0 1 1 0 0 0 0 14898 1750 15639 65350 55080 55080 1 0 0 0 VPDGMVGLIIGR PIHPPPRTSMTEEYRVPDGMVGLIIGRGGE EYRVPDGMVGLIIGRGGEQINKIQQDSGCK R V P G R G 0 1 0 1 0 0 0 3 0 2 1 0 1 0 1 0 0 0 0 2 0 0 12 0 1225.6853 Q92945 Q92945 151 162 KHSRP Far upstream element-binding protein 2 yes yes 2 0.00023937 131.11 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 16100000 0 0 16100000 14899 1733 15640 65351;65352;65353;65354 55081;55082;55083 55083 3 0 0 3267100 VPEESVLPLVQK LSSPSDTKAESPAEKVPEESVLPLVQKSTL AEKVPEESVLPLVQKSTLADYSAQKDLEPE K V P Q K S 0 0 0 0 0 1 2 0 0 0 2 1 0 0 2 1 0 0 0 3 0 0 12 0 1336.7602 Q9UKV3 Q9UKV3 495 506 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 1.4855E-12 183.27 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 13926000 0 2757200 11169000 14900 2184 15641 65355;65356;65357 55084;55085 55085 2 0 1347700 2434200 VPEILQLSDALR SEFREGVRKIAREQKVPEILQLSDALRDNI EQKVPEILQLSDALRDNILPELGVRFEDHE K V P L R D 1 1 0 1 0 1 1 0 0 1 3 0 0 0 1 1 0 0 0 1 0 0 12 0 1352.7664 P49589 P49589 607 618 CARS Cysteine--tRNA ligase, cytoplasmic yes yes 2 3.0259E-05 150.61 By MS/MS 2.5 0.5 1 1 2 4915600 0 0 4915600 14901 858 15642 65358;65359 55086;55087 55087 2 0 0 953400 VPELFANR DLYTLGCGEQGQLGRVPELFANRGGRQGLE EQGQLGRVPELFANRGGRQGLERLLVPKCV R V P N R G 1 1 1 0 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 8 0 944.50797 P18754 P18754 207 214 RCC1 Regulator of chromosome condensation yes yes 2 5.6115E-09 168.74 By MS/MS By MS/MS By MS/MS 4.22 1.4 1 2 2 3 1 1 4 4 330370000 15325000 94646000 220400000 14902 599 15643 65360;65361;65362;65363;65364;65365;65366;65367;65368 55088;55089;55090;55091;55092;55093;55094;55095;55096 55093 9 12277000 26317000 32853000 VPEPNENVGDAVQTK TPSSTPIPALSPPTKVPEPNENVGDAVQTK VPEPNENVGDAVQTKLIMLVDDFYYGRDGG K V P T K L 1 0 2 1 0 1 2 1 0 0 0 1 0 0 2 0 1 0 0 3 0 0 15 0 1595.7791 Q7Z3K3 Q7Z3K3 450 464 POGZ Pogo transposable element with ZNF domain yes yes 2 4.3214E-64 230.06 By matching By MS/MS By MS/MS 1.75 0.433 1 3 1 1 2 18084000 2922300 5422100 9739500 14903 1530 15644 65369;65370;65371;65372 55097;55098;55099 55098 3 3521000 2441700 2200900 VPETVSAATQTIK SQNNIGIQTMECSLRVPETVSAATQTIKNV LRVPETVSAATQTIKNVCEQGTSTVDQNFG R V P I K N 2 0 0 0 0 1 1 0 0 1 0 1 0 0 1 1 3 0 0 2 0 0 13 0 1343.7296 Q12888 Q12888 1163 1175 TP53BP1 Tumor suppressor p53-binding protein 1 yes yes 2 0.0011186 113.22 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 9607300 1108800 4831500 3667000 14904 1207 15645 65373;65374;65375 55100 55100 1 1108800 2361600 828660 VPEVPTAPATDAAPK PQESAHRRMEPPASKVPEVPTAPATDAAPK VPEVPTAPATDAAPKRVEIQMPKPAEAPTA K V P P K R 4 0 0 1 0 0 1 0 0 0 0 1 0 0 4 0 2 0 0 2 0 0 15 0 1462.7668 Q9UHD8 Q9UHD8 172 186 SEPT9 Septin-9 yes yes 2 0.0020704 90.614 By MS/MS 3 0 1 1 3959000 0 3959000 0 14905 2153 15646 65376 55101 55101 1 0 1687700 0 VPEWVDTVK VRALAAFLKKSGKLKVPEWVDTVKLAKHKE KSGKLKVPEWVDTVKLAKHKELAPYDENWF K V P V K L 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 1 1 0 3 0 0 9 0 1071.5601 P39019 P39019 30 38 RPS19 40S ribosomal protein S19 yes yes 2 0.00065644 133.58 By matching By MS/MS By MS/MS 7.67 0.471 1 2 1 1 1 98589000 3344100 62506000 32738000 14906 777 15647 65377;65378;65379 55102;55103 55102 2 7207300 28438000 5019100 VPFALFESFPEDFYVEGLPEGVPFR NEKCGEALGLKQAVKVPFALFESFPEDFYV EDFYVEGLPEGVPFRRPSTFGIPRLEKILR K V P F R R 1 1 0 1 0 0 4 2 0 0 2 0 0 5 4 1 0 0 1 3 0 0 25 0 2887.4109 P78347 P78347 757 781 GTF2I General transcription factor II-I yes yes 3 2.6132E-20 119.01 By MS/MS 2 0 1 1 9695600 0 0 9695600 14907 1085 15648 65380 55104 55104 1 0 0 2191000 VPFSLLR ______________________________ ______________________________ R V P L R G 0 1 0 0 0 0 0 0 0 0 2 0 0 1 1 1 0 0 0 1 0 0 7 0 830.50142 P04792 P04792 6 12 HSPB1 Heat shock protein beta-1 yes yes 2 1.1519E-07 170.96 By MS/MS By MS/MS 6.25 0.829 1 1 2 2 2 88594000 0 14104000 74491000 14908 417 15649 65381;65382;65383;65384 55105;55106;55107;55108;55109 55107 5 0 7963000 12903000 VPGFMYPVK NERFSRYFGGCPVIKVPGFMYPVKEHYLED GCPVIKVPGFMYPVKEHYLEDILAKLGKHQ K V P V K E 0 0 0 0 0 0 0 1 0 0 0 1 1 1 2 0 0 0 1 2 0 0 9 0 1036.5416 Q7L2E3 Q7L2E3 611 619 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 0.01988 82.305 By MS/MS 2 0.816 1 1 1 3 15828000 0 0 15828000 14909 1522 15650 65385;65386;65387 55110 55110 1 0 0 3452200 VPGISSIEQGMTGLK ITDGQAGFGNDTLSKVPGISSIEQGMTGLK VPGISSIEQGMTGLKIGGDLTAAVTKTVGT K V P L K I 0 0 0 0 0 1 1 3 0 2 1 1 1 0 1 2 1 0 0 1 0 0 15 0 1515.7967 Q7Z739 Q7Z739 181 195 YTHDF3 YTH domain-containing family protein 3 yes yes 2 0.026541 62.338 By MS/MS 3 0 1 1 0 0 0 0 14910 1535 15651 65388 55111 55111 1 0 0 0 VPGLPTPIENMILR LSEAWRCWKANIPWKVPGLPTPIENMILRY KVPGLPTPIENMILRYVKAKADWWTNTAHY K V P L R Y 0 1 1 0 0 0 1 1 0 2 2 0 1 0 3 0 1 0 0 1 0 0 14 0 1548.8698 Q6P2Q9 Q6P2Q9 728 741 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 3.1303E-11 176.48 By matching By MS/MS By MS/MS 1.67 0.745 3 2 1 1 2 3 196410000 402090 74190000 121810000 14911 1490 15652 65389;65390;65391;65392;65393;65394 55112;55113;55114;55115;55116 55112 5 402090 36049000 26298000 VPGLYVIDSIVR QSVEKFIQKCKPEYKVPGLYVIDSIVRQSR EYKVPGLYVIDSIVRQSRHQFGQEKDVFAP K V P V R Q 0 1 0 1 0 0 0 1 0 2 1 0 0 0 1 1 0 0 1 3 0 0 12 0 1329.7656 Q9UPN6;O95104 Q9UPN6 60 71 SCAF8;SCAF4 Protein SCAF8;Splicing factor, arginine/serine-rich 15 no no 2 0.02132 83.869 By MS/MS By MS/MS 7.2 0.748 1 2 2 2 3 9204100 0 2700400 6503700 14912 2216;309 15653 65395;65396;65397;65398;65399 55117;55118;55119 55118 3 0 1304400 1049600 VPGSQLTLGYMEEHGFTEPILVPK LRSRTFPSAEDVVARVPGSQLTLGYMEEHG YMEEHGFTEPILVPKKDGLGLAVPAPTFYV R V P P K K 0 0 0 0 0 1 3 3 1 1 3 1 1 1 3 1 2 0 1 2 0 0 24 0 2641.3462 O75151 O75151 108 131 PHF2 Lysine-specific demethylase PHF2 yes yes 3 0.00023632 61.111 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 65404000 0 2041500 63362000 14913 243 15654 65400;65401;65402;65403 55120;55121;55122 55121 3 0 870280 13656000 VPGVTAIELDEDTGTFR LAIGTHGSNIQQARKVPGVTAIELDEDTGT GVTAIELDEDTGTFRIYGESADAVKKARGF K V P F R I 1 1 0 2 0 0 2 2 0 1 1 0 0 1 1 0 3 0 0 2 0 0 17 0 1818.9 P51114 P51114 247 263 FXR1 Fragile X mental retardation syndrome-related protein 1 yes yes 2 6.0101E-05 109.22 By MS/MS 3 0 1 1 3905600 0 0 3905600 14914 887 15655 65404 55123 55123 0 0 0 757510 VPHPHPHPPPYPHFTR GLEGGGVASQDRGSRVPHPHPHPPPYPHFT PHPHPHPPPYPHFTRRY_____________ R V P T R R 0 1 0 0 0 0 0 0 4 0 0 0 0 1 7 0 1 0 1 1 0 0 16 0 1911.9645 Q14151 Q14151 936 951 SAFB2 Scaffold attachment factor B2 yes yes 4 0.0021091 68.919 By MS/MS By MS/MS 2.86 1.25 1 2 2 1 1 1 6 79891000 0 7579600 72312000 14915 1285 15656 65405;65406;65407;65408;65409;65410;65411 55124;55125;55126;55127;55128;55129;55130 55129 6 0 3413200 15140000 VPHWYHFSCFWK LRMAIMVQSPMFDGKVPHWYHFSCFWKVGH DGKVPHWYHFSCFWKVGHSIRHPDVEVDGF K V P W K V 0 0 0 0 1 0 0 0 2 0 0 1 0 2 1 1 0 2 1 1 0 0 12 0 1692.766 P09874 P09874 48 59 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;4 0.0090872 95.775 By MS/MS 2 0.707 1 2 1 4 24794000 0 0 24794000 14916 492 15657 65412;65413;65414;65415 55131;55132 55131 2 0 0 5532500 VPIIVPIMMLAIK QLIRASALRVLSSIRVPIIVPIMMLAIKEA IRVPIIVPIMMLAIKEASADLSPYVRKNAA R V P I K E 1 0 0 0 0 0 0 0 0 4 1 1 2 0 2 0 0 0 0 2 0 0 13 0 1436.8863 O00203;Q13367 O00203 144 156 AP3B1;AP3B2 AP-3 complex subunit beta-1;AP-3 complex subunit beta-2 yes no 2 0.00074343 117.89 By matching By MS/MS 2.4 1.02 1 2 1 1 1 4 30463000 0 983640 29479000 14917 111 15658 65416;65417;65418;65419;65420 55133;55134;55135 55135 3 0 442950 6239400 VPIPVKESIEEPSAK VREEEKLELQKLLERVPIPVKESIEEPSAK VPIPVKESIEEPSAKINVLLQAFISQLKLE R V P A K I 1 0 0 0 0 0 3 0 0 2 0 2 0 0 3 2 0 0 0 2 0 0 15 1 1621.8927 O75643 O75643 1044 1058 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 0.00012141 136.7 By MS/MS 1.75 0.829 2 1 1 4 31204000 0 31204000 0 14918 277 15659 65421;65422;65423;65424 55136;55137 55136 2 0 14687000 0 VPIPWVSGTSASTPVFGGILSLINEHR DVAALSDGYWVVSNRVPIPWVSGTSASTPV TPVFGGILSLINEHRILSGRPPLGFLNPRL R V P H R I 1 1 1 0 0 0 1 3 1 3 2 0 0 1 3 4 2 1 0 3 0 0 27 0 2833.5127 Q5IS74;O14773 Q5IS74 466 492 TPP1 Tripeptidyl-peptidase 1 yes no 3 1.3824E-20 100.29 By MS/MS 3.5 0.5 1 1 2 8345400 0 0 8345400 14919 144 15660 65425;65426 55138;55139 55139 2 0 0 1489800 VPLAGAAGGPGIGR MTVEGPPPKDTGIARVPLAGAAGGPGIGRA RVPLAGAAGGPGIGRAAGRGIPAGVPMPQA R V P G R A 3 1 0 0 0 0 0 5 0 1 1 0 0 0 2 0 0 0 0 1 0 0 14 0 1191.6724 P14678 P14678 95 108 SNRPB Small nuclear ribonucleoprotein-associated proteins B and B yes yes 2 0.011302 79.148 By matching By MS/MS 6.33 0.471 2 1 1 2 6967900 0 552100 6415800 14920 563 15661 65427;65428;65429 55140 55140 1 0 191120 1062100 VPLDEALQR QYLTGGLIEPDTPGRVPLDEALQRGTVDAR PDTPGRVPLDEALQRGTVDARTAQKLRDVG R V P Q R G 1 1 0 1 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 9 0 1039.5662 Q15149 Q15149 4543 4551 PLEC Plectin yes yes 2 0.0012418 109.01 By MS/MS By matching 2 0.816 1 1 1 2 1 29396000 0 22562000 6833900 14921 1348 15662 65430;65431;65432 55141 55141 1 0 10874000 1325400 VPLHQVPYAVK ETELTDQAWLPAGVRVPLHQVPYAVKGCFR AGVRVPLHQVPYAVKGCFRFLPPAQVTVVG R V P V K G 1 0 0 0 0 1 0 0 1 0 1 1 0 0 2 0 0 0 1 3 0 0 11 0 1249.7183 Q9H6R4 Q9H6R4 139 149 NOL6 Nucleolar protein 6 yes yes 2;3 0.0013109 111.17 By MS/MS 1.67 0.471 1 2 3 38119000 0 0 38119000 14922 1988 15663 65433;65434;65435 55142;55143 55143 2 0 0 8551300 VPLINELESAIHQLYK MRGYVQDLLECFSEKVPLINELESAIHQLY PLINELESAIHQLYKQRASRLVQRRQDDIK K V P Y K Q 1 0 1 0 0 1 2 0 1 2 3 1 0 0 1 1 0 0 1 1 0 0 16 0 1866.0251 Q9Y5B6 Q9Y5B6 462 477 PAXBP1 PAX3- and PAX7-binding protein 1 yes yes 3 0.0011169 78.191 By MS/MS 2.5 0.5 1 1 2 9177900 0 0 9177900 14923 2295 15664 65436;65437 55144;55145 55144 2 0 0 1978800 VPLQQNFQDNQFQGK QDSTSDLIPAPPLSKVPLQQNFQDNQFQGK VPLQQNFQDNQFQGKWYVVGLAGNAILRED K V P G K W 0 0 2 1 0 5 0 1 0 0 1 1 0 2 1 0 0 0 0 1 0 0 15 0 1789.8747 P80188 P80188 36 50 LCN2 Neutrophil gelatinase-associated lipocalin yes yes 2 2.9113E-46 226.73 By MS/MS 9.5 0.5 1 1 2 6168600 6168600 0 0 14924 1092 15665 65438;65439 55146;55147 55146 2 5962400 0 0 VPLSAYER RMAPALSGANLTSPRVPLSAYERVSGRTSP ANLTSPRVPLSAYERVSGRTSPPLLDRARS R V P E R V 1 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 8 0 933.49198 Q9UQ35 Q9UQ35 2385 2392 SRRM2 Serine/arginine repetitive matrix protein 2 yes yes 2 0.0041064 102.77 By matching By MS/MS By MS/MS 2.38 1.22 3 1 2 2 1 4 3 116570000 15140000 43432000 57996000 14925 2219 15666 65440;65441;65442;65443;65444;65445;65446;65447 55148;55149;55150;55151;55152 55151 5 15140000 18967000 11204000 VPLSEFDFSWSK RPEELGFLRYLKQSKVPLSEFDFSWSKISD QSKVPLSEFDFSWSKISDIQSQLEKLIEKN K V P S K I 0 0 0 1 0 0 1 0 0 0 1 1 0 2 1 3 0 1 0 1 0 0 12 0 1440.6925 Q9NVP1 Q9NVP1 546 557 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 4.4842E-08 168.74 By matching By MS/MS By MS/MS 2.5 1.12 2 2 2 2 1 3 4 107780000 1084700 17202000 89490000 14926 2069 15667 65448;65449;65450;65451;65452;65453;65454;65455 55153;55154;55155;55156;55157;55158 55154 6 1084700 7056800 17606000 VPMVVLQDILAVRPPQIK QDSWSEAGGILFKGKVPMVVLQDILAVRPP VVLQDILAVRPPQIKSLPATPQGKNMTPES K V P I K S 1 1 0 1 0 2 0 0 0 2 2 1 1 0 3 0 0 0 0 4 0 0 18 1 2015.1965 Q13111 Q13111 237 254 CHAF1A Chromatin assembly factor 1 subunit A yes yes 3 7.0817E-06 101.42 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 8882900 0 2532800 6350100 14927 1220 15668 65456;65457;65458;65459 55159;55160;55161;55162;55163 55162 5 0 1140600 1356600 VPNLPSFK PEIPRNINIGDISIKVPNLPSFK_______ IGDISIKVPNLPSFK_______________ K V P F K - 0 0 1 0 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 1 0 0 8 0 900.5069 Q92572 Q92572 186 193 AP3S1 AP-3 complex subunit sigma-1 yes yes 2 0.01394 89.046 By MS/MS By MS/MS 7 0 2 1 1 10149000 0 2655400 7493300 14928 1708 15669 65460;65461 55164;55165 55165 2 0 1524700 1329600 VPNSNPPEYEFFWGLR ITDEFVKQKYLDYARVPNSNPPEYEFFWGL PNSNPPEYEFFWGLRSYYETSKMKVLKFAC R V P L R S 0 1 2 0 0 0 2 1 0 0 1 0 0 2 3 1 0 1 1 1 0 0 16 0 1950.9264 Q9UNF1 Q9UNF1 431 446 MAGED2 Melanoma-associated antigen D2 yes yes 2 6.7679E-05 108.72 By MS/MS 3 0 1 1 2949400 0 0 2949400 14929 2206 15670 65462 55166 55166 1 0 0 572040 VPNSVLWLLR IDPSTLQMWANILKRVPNSVLWLLRFPAVG NILKRVPNSVLWLLRFPAVGEPNIQQYAQN R V P L R F 0 1 1 0 0 0 0 0 0 0 3 0 0 0 1 1 0 1 0 2 0 0 10 0 1195.7077 O15294 O15294 868 877 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit yes yes 2 7.3714E-11 167.24 By MS/MS By MS/MS 2 0 2 1 1 7621100 0 2158900 5462200 14930 175 15671 65463;65464 55167;55168 55168 2 0 972190 1234300 VPNVLTFDFMSK RCNLASVMLQLLAMKVPNVLTFDFMSKPSP AMKVPNVLTFDFMSKPSPDHIQAAIAQLDL K V P S K P 0 0 1 1 0 0 0 0 0 0 1 1 1 2 1 1 1 0 0 2 0 0 12 0 1396.7061 Q9H6R0 Q9H6R0 451 462 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 2 0.04749 73.781 By MS/MS 3 0 1 1 3503000 0 0 3503000 14931 1987 15672 65465 55169 55169 1 0 0 679410 VPPAINQFTQALDR IRLQRQRAILYKRLKVPPAINQFTQALDRQ KVPPAINQFTQALDRQTATQLLKLAHKYRP K V P D R Q 2 1 1 1 0 2 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 14 0 1568.8311 P62424 P62424 76 89 RPL7A 60S ribosomal protein L7a yes yes 2;3 5.9873E-45 218.11 By matching By MS/MS By MS/MS 4.53 2.12 2 2 2 2 1 4 4 1 9 7 498340000 2226700 142440000 353670000 14932 1026 15673 65466;65467;65468;65469;65470;65471;65472;65473;65474;65475;65476;65477;65478;65479;65480;65481;65482 55170;55171;55172;55173;55174;55175;55176;55177;55178;55179;55180;55181;55182;55183;55184;55185;55186;55187;55188;55189;55190 55186 21 2682800 51490000 54302000 VPPEFLVQR WIGREQILGDEARARVPPEFLVQRAVHANP DEARARVPPEFLVQRAVHANPPTLLLPVAH R V P Q R A 0 1 0 0 0 1 1 0 0 0 1 0 0 1 2 0 0 0 0 2 0 0 9 0 1083.6077 Q13724 Q13724 498 506 MOGS Mannosyl-oligosaccharide glucosidase yes yes 2 0.0058473 95.531 By MS/MS 2 0 1 1 4092900 0 4092900 0 14933 1266 15674 65483 55191 55191 1 0 1843100 0 VPPFVDLNVNSNEGK NNLNLPQVALSFGFKVPPFVDLNVNSNEGK VPPFVDLNVNSNEGKQKKRGGGGGFGYQKT K V P G K Q 0 0 3 1 0 0 1 1 0 0 1 1 0 1 2 1 0 0 0 3 0 0 15 0 1627.8206 Q9NVP1 Q9NVP1 617 631 DDX18 ATP-dependent RNA helicase DDX18 yes yes 2 3.6764E-22 190.53 By MS/MS By MS/MS 4.86 2.23 1 2 1 2 1 3 4 39286000 0 17480000 21806000 14934 2069 15675 65484;65485;65486;65487;65488;65489;65490 55192;55193;55194;55195;55196;55197 55197 6 0 7405100 4023300 VPPNHVGKPLLK FFSGIEKKLKETLAKVPPNHVGKPLLKKPM LAKVPPNHVGKPLLKKPMGPAHWEKIEAIN K V P L K K 0 0 1 0 0 0 0 1 1 0 2 2 0 0 3 0 0 0 0 2 0 0 12 1 1297.787 Q8NCA5 Q8NCA5 182 193 FAM98A Protein FAM98A yes yes 3 0.014442 69.721 By MS/MS 4 0 1 1 3840000 0 3840000 0 14935 1632 15676 65491 55198;55199 55198 2 0 1274300 0 VPPPPPIAR FQRDYYDRMYSYPARVPPPPPIARAVVPSK YSYPARVPPPPPIARAVVPSKRQRVSGNTS R V P A R A 1 1 0 0 0 0 0 0 0 1 0 0 0 0 5 0 0 0 0 1 0 0 9 0 942.56509 P07910 P07910 143 151 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 yes yes 2 0.00036838 124.37 By MS/MS By MS/MS By MS/MS 4.91 1.73 1 1 2 2 3 2 1 6 4 1174100000 40707000 595910000 537470000 14936 467 15677 65492;65493;65494;65495;65496;65497;65498;65499;65500;65501;65502 55200;55201;55202;55203;55204;55205;55206;55207;55208;55209;55210;55211;55212;55213;55214;55215;55216;55217;55218;55219;55220;55221;55222;55223;55224;55225;55226 55220 27 54201000 213290000 78554000 VPPPWLIAMQR LRISLGMPVGPNAHKVPPPWLIAMQRYGPP NAHKVPPPWLIAMQRYGPPPSYPNLKIPGL K V P Q R Y 1 1 0 0 0 1 0 0 0 1 1 0 1 0 3 0 0 1 0 1 0 0 11 0 1306.722 Q13435 Q13435 628 638 SF3B2 Splicing factor 3B subunit 2 yes yes 2;3 3.1276E-05 148.04 By MS/MS By MS/MS By MS/MS 2.69 1.32 2 5 3 2 1 1 6 6 69426000 2043000 21553000 45830000 14937 1248 15678 65503;65504;65505;65506;65507;65508;65509;65510;65511;65512;65513;65514;65515 55227;55228;55229;55230;55231;55232;55233;55234;55235;55236;55237;55238 55235 12 2461500 9579100 9435700 VPPSSFSR SRLNSPLSLPFVPGRVPPSSFSRFSQAVIL LPFVPGRVPPSSFSRFSQAVILSQLFPLES R V P S R F 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 3 0 0 0 1 0 0 8 0 875.45012 Q99935 Q99935 70 77 PROL1 Proline-rich protein 1;Opiorphin yes yes 2 0.023868 81.297 By MS/MS 9.5 0.5 1 1 2 4972300 4972300 0 0 14938 1869 15679 65516;65517 55239;55240 55239 2 7225100 0 0 VPPVQVSPLIK ______________________________ ______________________________ M V P I K L 0 0 0 0 0 1 0 0 0 1 1 1 0 0 3 1 0 0 0 3 0 0 11 0 1175.7278 P56385 P56385 2 12 ATP5I ATP synthase subunit e, mitochondrial yes yes 2 0.0082139 94.692 By MS/MS By MS/MS 10 0 2 1 1 4832700 0 1499900 3332800 14939 950 15680 65518;65519 55241;55242 55242 2 0 7588400 7289100 VPQAQPTKPALK KRNAAENMLEILGFKVPQAQPTKPALKSEE GFKVPQAQPTKPALKSEEKTPIKKPGDGRK K V P L K S 2 0 0 0 0 2 0 0 0 0 1 2 0 0 3 0 1 0 0 1 0 0 12 1 1276.7503 O95793 O95793 356 367 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2 4.9715E-07 166.19 By MS/MS 3.5 0.5 1 1 2 3151500 0 0 3151500 14940 341 15681 65520;65521 55243 55243 1 0 0 553880 VPQFSFSR EPVGLMTGSGVVGVKVPQFSFSRLAGADVV SGVVGVKVPQFSFSRLAGADVVLGVEMTST K V P S R L 0 1 0 0 0 1 0 0 0 0 0 0 0 2 1 2 0 0 0 1 0 0 8 0 966.49232 P27708 P27708 1263 1270 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 2 0.0012759 118.05 By matching By MS/MS 1 0 2 1 1 15944000 859180 15085000 0 14941 681 15682 65522;65523 55244 55244 1 859180 7373200 0 VPQLPITNFNR KQTPKQRLLGWIQNKVPQLPITNFNRDWQD IQNKVPQLPITNFNRDWQDGKALGALVDNC K V P N R D 0 1 2 0 0 1 0 0 0 1 1 0 0 1 2 0 1 0 0 1 0 0 11 0 1297.7143 Q14315 Q14315 173 183 FLNC Filamin-C yes yes 2 0.0065913 97.857 By MS/MS 1 0 1 1 13846000 0 13846000 0 14942 1298 15683 65524 55245 55245 1 0 6768000 0 VPQVSTPTLVEVSR EYKFQNALLVRYTKKVPQVSTPTLVEVSRN KVPQVSTPTLVEVSRNLGKVGSKCCKHPEA K V P S R N 0 1 0 0 0 1 1 0 0 0 1 0 0 0 2 2 2 0 0 4 0 0 14 0 1510.8355 CON__P02768-1;P02768;CON__P02769 CON__P02768-1 439 452 ALB Serum albumin no no 2;3 1.0882E-58 237.49 By MS/MS By MS/MS By MS/MS 6.11 3.01 2 1 5 2 1 3 3 2 2 6 13 9 5 1560100000 1378000000 140700000 41430000 + 14943 44;45 15684 65525;65526;65527;65528;65529;65530;65531;65532;65533;65534;65535;65536;65537;65538;65539;65540;65541;65542;65543;65544;65545;65546;65547;65548;65549;65550;65551 55246;55247;55248;55249;55250;55251;55252;55253;55254;55255;55256;55257;55258;55259;55260;55261;55262;55263;55264;55265;55266;55267;55268;55269;55270;55271;55272;55273;55274 55264 29 1311100000 290770000 20138000 VPSGFYVGSYVHGAMQSPSLHK KLGENMILKRAAWVKVPSGFYVGSYVHGAM GSYVHGAMQSPSLHKLVLGKYGALVICETS K V P H K L 1 0 0 0 0 1 0 3 2 0 1 1 1 1 2 4 0 0 2 3 0 0 22 0 2347.1419 P43897 P43897 207 228 TSFM Elongation factor Ts, mitochondrial yes yes 4 0.065102 20.426 By MS/MS 6 0 1 1 3169000 0 3169000 0 14944 818 15685 65552 55275 55275 1 0 1097000 0 VPSHLQAETLVGK VLTLLCDACQKVYLRVPSHLQAETLVGKVN LRVPSHLQAETLVGKVNLEECLKSASLIRS R V P G K V 1 0 0 0 0 1 1 1 1 0 2 1 0 0 1 1 1 0 0 2 0 0 13 0 1377.7616 Q08554 Q08554 37 49 DSC1 Desmocollin-1 yes yes 2;3 0.00051842 110.8 By MS/MS By matching 7.11 3.28 1 1 1 1 2 3 8 1 43119000 42438000 0 681700 14945 1185 15686 65553;65554;65555;65556;65557;65558;65559;65560;65561 55276;55277;55278;55279 55279 3 55163000 0 1490900 VPSLSVPWLQDR NTTDFVDEVRAIIPRVPSLSVPWLQDRIED IPRVPSLSVPWLQDRIEDSGENLETEPLES R V P D R I 0 1 0 1 0 1 0 0 0 0 2 0 0 0 2 2 0 1 0 2 0 0 12 0 1395.751 P78345 P78345 200 211 RPP38 Ribonuclease P protein subunit p38 yes yes 2 8.4341E-33 148.91 By MS/MS 6 0 1 1 0 0 0 0 14946 1084 15687 65562 55280 55280 1 0 0 0 VPSLTTVPQTQGQTTAQK RGLGATTKITTSHPRVPSLTTVPQTQGQTT LTTVPQTQGQTTAQKVSKKTGPRCSTAIAT R V P Q K V 1 0 0 0 0 4 0 1 0 0 1 1 0 0 2 1 5 0 0 2 0 0 18 0 1883.9953 Q9BW19 Q9BW19 69 86 KIFC1 Kinesin-like protein KIFC1 yes yes 2 2.8069E-16 174.72 By MS/MS By MS/MS 3 0 2 1 1 21628000 0 8420000 13208000 14947 1919 15688 65563;65564 55281;55282 55281 2 0 3589500 2561700 VPSNASWEQAMK EEAKQAFKELLKEKRVPSNASWEQAMKMII EKRVPSNASWEQAMKMIINDPRYSALAKLS R V P M K M 2 0 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 1 0 1 0 0 12 0 1346.6289 O75400 O75400 409 420 PRPF40A Pre-mRNA-processing factor 40 homolog A yes yes 2 1.2497E-05 156.48 By MS/MS By MS/MS 2.75 0.829 2 1 1 2 2 32102000 0 9627000 22475000 14948 258 15689 65565;65566;65567;65568 55283;55284 55284 2 0 4267100 4599900 VPSPPDEHQEAENAVSSGNR NHEKQESQDLRATAKVPSPPDEHQEAENAV DEHQEAENAVSSGNRDSKVPSEGKKSLYTD K V P N R D 2 1 2 1 0 1 3 1 1 0 0 0 0 0 3 3 0 0 0 2 0 0 20 0 2118.9566 Q9BXS6 Q9BXS6 133 152 NUSAP1 Nucleolar and spindle-associated protein 1 yes yes 3 5.6623E-14 138.3 By MS/MS 4 0 1 1 5613300 0 0 5613300 14949 1930 15690 65569 55285 55285 1 0 0 916840 VPSTEAEALASSLMGLFEK VTEGSFVYKGGKIYKVPSTEAEALASSLMG EAEALASSLMGLFEKRRFRKFLVYVANFDE K V P E K R 3 0 0 0 0 0 3 1 0 0 3 1 1 1 1 3 1 0 0 1 0 0 19 0 1978.9921 P50395 P50395 119 137 GDI2 Rab GDP dissociation inhibitor beta yes yes 3 0.013613 44.587 By MS/MS 4 0 1 1 916940 0 0 916940 14950 877 15691 65570 55286 55286 1 0 0 149770 VPSVPETELTDQAWLPAGVR RIDAFLREVNQRVVRVPSVPETELTDQAWL ETELTDQAWLPAGVRVPLHQVPYAVKGCFR R V P V R V 2 1 0 1 0 1 2 1 0 0 2 0 0 0 3 1 2 1 0 3 0 0 20 0 2164.1164 Q9H6R4 Q9H6R4 119 138 NOL6 Nucleolar protein 6 yes yes 2;3 8.3323E-36 198.14 By MS/MS By MS/MS 2 0 3 1 2 26285000 0 4746000 21539000 14951 1988 15692 65571;65572;65573 55287;55288;55289 55287 3 0 2137200 4867400 VPTAHLEDVLPLAEDITTILSK KEKSRLSHLIKFAQKVPTAHLEDVLPLAED DVLPLAEDITTILSKCCDSVSEDCIKELPE K V P S K C 2 0 0 2 0 0 2 0 1 2 4 1 0 0 2 1 3 0 0 2 0 0 22 0 2374.2995 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 243 264 yes no 3 1.261E-09 95.622 By MS/MS By MS/MS 4 0 2 1 1 6869800 2700400 0 4169400 + 14952 26 15693 65574;65575 55290;55291 55291 2 2106800 0 680990 VPTANVSVVDLTCR VIPELNGKLTGMAFRVPTANVSVVDLTCRL RVPTANVSVVDLTCRLEKPAKYDDIKKVVK R V P C R L 1 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 2 0 0 4 0 0 14 0 1529.7872 P04406 P04406 235 248 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2 9.9E-58 228.12 By MS/MS By MS/MS 7.5 1.5 2 2 1 1 4 2 57084000 27019000 0 30065000 14953 415 15694 65576;65577;65578;65579;65580;65581 55292;55293;55294;55295 55293 4 34418000 0 4617400 VPTLAVPAISLPDDVR ______________________________ PTLAVPAISLPDDVRRRLKDLERDSLTEKE R V P V R R 2 1 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 16 0 1661.9352 P26358 P26358 10 25 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 2 9.8291E-05 104.59 By MS/MS 1 0 1 1 5620800 0 0 5620800 14954 667 15695 65582 55296 55296 1 0 0 1211100 VPTLAVPAISLPDDVRR ______________________________ TLAVPAISLPDDVRRRLKDLERDSLTEKEC R V P R R R 2 2 0 2 0 0 0 0 0 1 2 0 0 0 3 1 1 0 0 3 0 0 17 1 1818.0363 P26358 P26358 10 26 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.00030576 88.536 By MS/MS 1 0 1 1 5407400 0 0 5407400 14955 667 15696 65583 55297 55297 1 0 0 1165100 VPTTEKPTVTVNFR SVAYANMCRCLMALKVPTTEKPTVTVNFRK KVPTTEKPTVTVNFRKLLLNRCQKEFEKDK K V P F R K 0 1 1 0 0 0 1 0 0 0 0 1 0 1 2 0 4 0 0 3 0 0 14 1 1587.8621 Q04637 Q04637 827 840 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 yes yes 3 0.02119 56.599 By MS/MS 2 0 1 1 3628200 0 3628200 0 14956 1159 15697 65584 55298 55298 1 0 1633800 0 VPTWGPLR SCVIVIRVLRDLCTRVPTWGPLRGWPLELL LRDLCTRVPTWGPLRGWPLELLCEKSIGTA R V P L R G 0 1 0 0 0 0 0 1 0 0 1 0 0 0 2 0 1 1 0 1 0 0 8 0 924.51814 Q12906 Q12906 240 247 ILF3 Interleukin enhancer-binding factor 3 yes yes 2 6.8444E-06 155.73 By matching By MS/MS By MS/MS 3 1.85 4 3 2 2 3 4 5 5 186840000 11331000 81783000 93726000 14957 1211 15698 65585;65586;65587;65588;65589;65590;65591;65592;65593;65594;65595;65596;65597;65598 55299;55300;55301;55302;55303;55304;55305;55306;55307;55308;55309;55310;55311;55312 55303 13 12687000 35275000 19164000 VPTWSDFPSWAMELLVEK SCVIIIRILRDLCQRVPTWSDFPSWAMELL WSDFPSWAMELLVEKAISSASSPQSPGDAL R V P E K A 1 0 0 1 0 0 2 0 0 0 2 1 1 1 2 2 1 2 0 2 0 0 18 0 2134.0445 Q96KR1 Q96KR1 936 953 ZFR Zinc finger RNA-binding protein yes yes 2 1.0438E-09 160.48 By MS/MS 2 0 1 1 8626400 0 0 8626400 14958 1806 15699 65599 55313 55313 1 0 0 1949400 VPVASPSAHNISSSGGAPDR ESNCEVPRPSTAPQRVPVASPSAHNISSSG PSAHNISSSGGAPDRTNFPRGVSSRSTFHA R V P D R T 3 1 1 1 0 0 0 2 1 1 0 0 0 0 3 5 0 0 0 2 0 0 20 0 1904.9341 Q7KZI7 Q7KZI7 565 584 MARK2 Serine/threonine-protein kinase MARK2 yes yes 3 7.3738E-08 104.45 By MS/MS By MS/MS 4.43 1.59 1 2 1 3 4 3 31097000 0 12372000 18725000 14959 1519 15700 65600;65601;65602;65603;65604;65605;65606 55314;55315;55316;55317 55314 3 0 4363300 3458100 VPVAVQGEDTVQSLTQGDGVAK LMVFVTNPDGSPAYRVPVAVQGEDTVQSLT EDTVQSLTQGDGVAKLSINTHPSQKPLSIT R V P A K L 2 0 0 2 0 3 1 3 0 0 1 1 0 0 1 1 2 0 0 5 0 0 22 0 2197.1226 P01024 P01024 387 408 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2;3 1.9132E-109 250.17 By MS/MS 9.33 0.471 2 1 3 14662000 14662000 0 0 14960 371 15701 65607;65608;65609 55318;55319;55320 55319 3 9245400 0 0 VPVDVAYQR QIATGGIIDPVHSHRVPVDVAYQRGYFSEE PVHSHRVPVDVAYQRGYFSEEMNRVLADPS R V P Q R G 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 0 1045.5556 P58107;Q15149 Q15149 3620 3628 EPPK1;PLEC Epiplakin;Plectin no no 2 0.00031653 109.86 By MS/MS By MS/MS By MS/MS 1 0 3 1 1 1 37744000 2309100 35435000 0 14961 1348;958 15702 65610;65611;65612 55321;55322;55323 55323 2 2309100 17320000 0 VPVDVAYR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE DPVHSHRVPVDVAYRRGYFDEEMNRVLADP R V P Y R R 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 8 0 917.49707 P58107;Q15149 Q15149 2961 2968 EPPK1;PLEC Epiplakin;Plectin no no 2 0.0011663 119.57 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 3 2 342370000 0 199740000 142630000 14962 1348;958 15703 65613;65614;65615;65616;65617 55324;55325;55326 55326 3 0 96929000 30479000 VPVDVAYRR QIATGGVIDPVHSHRVPVDVAYRRGYFDEE PVHSHRVPVDVAYRRGYFDEEMNRVLADPS R V P R R G 1 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3 0 0 9 1 1073.5982 P58107;Q15149 Q15149 2961 2969 EPPK1;PLEC Epiplakin;Plectin no no 2 0.0011463 133.6 By MS/MS 1 0 1 1 4201200 0 4201200 0 14963 1348;958 15704 65618 55327 55327 1 0 2053500 0 VPVFRPMDLMVEASPR EDGRYRDPTTVTTLRVPVFRPMDLMVEASP PVFRPMDLMVEASPRRIFANAHTYHINSIS R V P P R R 1 2 0 1 0 0 1 0 0 0 1 0 2 1 3 1 0 0 0 3 0 0 16 1 1842.9484 P63151 P63151 154 169 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform yes yes 3 0.00056129 88.385 By MS/MS 4.5 0.5 1 1 2 4663400 0 4663400 0 14964 1060 15705 65619;65620 55328;55329 55329 2 0 1416100 0 VPVNLLR HACFRLFLTMEINPKVPVNLLRAGRIFVFE LTMEINPKVPVNLLRAGRIFVFEPPPGVKA K V P L R A 0 1 1 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 2 0 0 7 0 809.51232 Q14204 Q14204 4134 4140 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 3.9819E-06 126.05 By MS/MS 1 0 1 1 0 0 0 0 14965 1292 15706 65621 55330 55330 1 0 0 0 VPVSVNLLSK LLPSLIGRHFYQRKKVPVSVNLLSKNLSRE YQRKKVPVSVNLLSKNLSREINDCIGGTVL K V P S K N 0 0 1 0 0 0 0 0 0 0 2 1 0 0 1 2 0 0 0 3 0 0 10 0 1054.6386 O76021 O76021 179 188 RSL1D1 Ribosomal L1 domain-containing protein 1 yes yes 2 0.00013947 143.7 By MS/MS By MS/MS 4.58 2.81 2 1 2 2 1 1 1 1 1 6 6 193410000 0 81797000 111610000 14966 295 15707 65622;65623;65624;65625;65626;65627;65628;65629;65630;65631;65632;65633 55331;55332;55333;55334;55335;55336;55337;55338 55332 8 0 29869000 22278000 VPVWEPQDWQQQLVNIR EGSDSEKGEGAEPLKVPVWEPQDWQQQLVN VWEPQDWQQQLVNIRAMRNKKDAPVDHLGT K V P I R A 0 1 1 1 0 4 1 0 0 1 1 0 0 0 2 0 0 2 0 3 0 0 17 0 2134.096 P78549 P78549 84 100 NTHL1 Endonuclease III-like protein 1 yes yes 2 1.2266E-27 204.17 By MS/MS 6 0 1 1 5365500 0 0 5365500 14967 1090 15708 65634 55339 55339 1 0 0 802730 VPWFDQQNGR RNGSSLAKIYTEAKKVPWFDQQNGRTYLKY TEAKKVPWFDQQNGRTYLKYSIKALVQNDT K V P G R T 0 1 1 1 0 2 0 1 0 0 0 0 0 1 1 0 0 1 0 1 0 0 10 0 1245.5891 Q92522 Q92522 77 86 H1FX Histone H1x yes yes 2 0.00064157 131.06 By MS/MS By matching 6 0 2 1 1 27863000 0 10488000 17374000 14968 1706 15709 65635;65636 55340 55340 1 0 3630700 2599400 VPYFNAPVYLENK CEDDIVCKCTTDENKVPYFNAPVYLENKEQ NKVPYFNAPVYLENKEQIGKVDEIFGQLRD K V P N K E 1 0 2 0 0 0 1 0 0 0 1 1 0 1 2 0 0 0 2 2 0 0 13 0 1552.7926 Q9NY12 Q9NY12 95 107 GAR1 H/ACA ribonucleoprotein complex subunit 1 yes yes 2;3 2.3898E-07 168.46 By MS/MS By MS/MS 7 0 4 2 2 79386000 0 11016000 68370000 14969 2093 15710 65637;65638;65639;65640 55341;55342;55343 55342 3 0 6325400 12132000 VPYPVFESNPEFLYVEGLPEGIPFR NLKFAQALGLTEAVKVPYPVFESNPEFLYV EFLYVEGLPEGIPFRSPTWFGIPRLERIVR K V P F R S 0 1 1 0 0 0 4 2 0 1 2 0 0 3 5 1 0 0 2 3 0 0 25 0 2894.4531 P78347 P78347 595 619 GTF2I General transcription factor II-I yes yes 2;3 4.4557E-29 153.74 By MS/MS 2 0 2 2 7694900 0 0 7694900 14970 1085 15711 65641;65642 55344;55345 55345 2 0 0 1738900 VQAINVSSR SSEGVKGAKSFFEAKVQAINVSSRFEEEIK SFFEAKVQAINVSSRFEEEIKAEQEERKKQ K V Q S R F 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 2 0 0 9 0 972.53524 Q96C19 Q96C19 198 206 EFHD2 EF-hand domain-containing protein D2 yes yes 2 4.4686E-07 155.1 By MS/MS By MS/MS 6 0 2 1 1 17485000 0 9408800 8076500 14971 1757 15712 65643;65644 55346;55347 55347 2 0 3257000 1208300 VQALEEANNDLENK TMQELNSRLASYLDKVQALEEANNDLENKI KVQALEEANNDLENKIQDWYDKKGPAAIQK K V Q N K I 2 0 3 1 0 1 3 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 14 0 1585.7584 P35527;CON__P35527 P35527 171 184 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 6.2502E-58 232 By MS/MS By MS/MS By MS/MS 5.43 2.96 5 5 5 5 3 5 4 4 5 5 20 8 18 8804200000 5691100000 68876000 3044300000 + 14972 750 15713 65645;65646;65647;65648;65649;65650;65651;65652;65653;65654;65655;65656;65657;65658;65659;65660;65661;65662;65663;65664;65665;65666;65667;65668;65669;65670;65671;65672;65673;65674;65675;65676;65677;65678;65679;65680;65681;65682;65683;65684;65685;65686;65687;65688;65689;65690 55348;55349;55350;55351;55352;55353;55354;55355;55356;55357;55358;55359;55360;55361;55362;55363;55364;55365;55366;55367;55368;55369;55370;55371;55372;55373;55374;55375;55376;55377;55378;55379;55380;55381;55382;55383;55384;55385;55386;55387;55388;55389;55390;55391;55392;55393;55394;55395;55396;55397;55398;55399;55400;55401 55367 54 5143800000 37662000 914680000 VQALEEANNDLENKIQDWYDK TMQELNSRLASYLDKVQALEEANNDLENKI ANNDLENKIQDWYDKKGPAAIQKNYSPYYN K V Q D K K 2 0 3 3 0 2 3 0 0 1 2 2 0 0 0 0 0 1 1 1 0 0 21 1 2534.1925 P35527;CON__P35527 P35527 171 191 KRT9 Keratin, type I cytoskeletal 9 yes no 2;3 2.9043E-47 215.75 By MS/MS By MS/MS 4.36 2.57 2 1 2 1 1 2 1 1 6 5 188650000 113240000 0 75412000 + 14973 750 15714 65691;65692;65693;65694;65695;65696;65697;65698;65699;65700;65701 55402;55403;55404;55405;55406;55407;55408;55409 55404 8 90077000 0 15819000 VQALEEANNDLENKIQDWYDKK TMQELNSRLASYLDKVQALEEANNDLENKI NNDLENKIQDWYDKKGPAAIQKNYSPYYNT K V Q K K G 2 0 3 3 0 2 3 0 0 1 2 3 0 0 0 0 0 1 1 1 0 0 22 2 2662.2875 P35527;CON__P35527 P35527 171 192 KRT9 Keratin, type I cytoskeletal 9 yes no 3;4 4.5576E-53 207.82 By MS/MS By MS/MS 5.26 2.72 4 3 2 2 4 2 2 4 13 10 488320000 313700000 0 174620000 + 14974 750 15715 65702;65703;65704;65705;65706;65707;65708;65709;65710;65711;65712;65713;65714;65715;65716;65717;65718;65719;65720;65721;65722;65723;65724 55410;55411;55412;55413;55414;55415;55416;55417;55418;55419;55420;55421;55422;55423;55424;55425 55416 16 253260000 0 36662000 VQALTTDISLIFAALK ADGFLPITLIASFHRVQALTTDISLIFAAL QALTTDISLIFAALKDSKVVEIVDEKVRRR R V Q L K D 3 0 0 1 0 1 0 0 0 2 3 1 0 1 0 1 2 0 0 1 0 0 16 0 1702.9869 Q6PKG0 Q6PKG0 447 462 LARP1 La-related protein 1 yes yes 2 0.019042 65.395 By MS/MS 1 0 1 1 1384600 0 0 1384600 14975 1497 15716 65725 55426 55426 1 0 0 298330 VQAQAEQGQQELK ALGTERTTLEGHLAKVQAQAEQGQQELKNL AKVQAQAEQGQQELKNLRACVLELEERLST K V Q L K N 2 0 0 0 0 5 2 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 13 0 1455.7318 Q9BW19 Q9BW19 195 207 KIFC1 Kinesin-like protein KIFC1 yes yes 2 4.0821E-07 164.1 By MS/MS By MS/MS 3 0 2 1 1 9566900 0 3366600 6200400 14976 1919 15717 65726;65727 55427;55428 55428 2 0 1435200 1202600 VQAQVIQETIVPK MQQQQQTTQQQLPQKVQAQVIQETIVPKEP QKVQAQVIQETIVPKEPPPEFEFIADPPSI K V Q P K E 1 0 0 0 0 3 1 0 0 2 0 1 0 0 1 0 1 0 0 3 0 0 13 0 1451.8348 Q15459 Q15459 132 144 SF3A1 Splicing factor 3A subunit 1 yes yes 2 0.0081063 91.701 By matching By MS/MS By matching 2.75 0.829 2 1 1 1 2 1 17279000 4750500 10098000 2430600 14977 1369 15718 65728;65729;65730;65731 55429 55429 1 5723800 4506000 397000 VQASLAANTFTITGHAETK MFTNQGTVIHFNNPKVQASLAANTFTITGH LAANTFTITGHAETKQLTEMLPSILNQLGA K V Q T K Q 4 0 1 0 0 1 1 1 1 1 1 1 0 1 0 1 4 0 0 1 0 0 19 0 1959.0062 P20290 P20290 123 141 BTF3 Transcription factor BTF3 yes yes 2;3 9.2262E-11 163.23 By matching By MS/MS 7.2 0.4 4 1 2 3 68097000 0 20553000 47544000 14978 614 15719 65732;65733;65734;65735;65736 55430;55431 55430 2 0 11802000 8154400 VQAVDAVAAELAAER KHEAIETDIVAYSGRVQAVDAVAAELAAER VQAVDAVAAELAAERYHDIKRIAARQHNVA R V Q E R Y 6 1 0 1 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 15 0 1511.7944 O15020 O15020 481 495 SPTBN2 Spectrin beta chain, non-erythrocytic 2 yes yes 2 0.0022147 89.629 By MS/MS 1 0 1 1 5525000 0 5525000 0 14979 160 15720 65737 55432 55432 1 0 2700500 0 VQAVVAVAR KHEAIETDIAAYEERVQAVVAVARELEAEN AAYEERVQAVVAVARELEAENYHDIKRITA R V Q A R E 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 9 0 911.55525 Q01082 Q01082 478 486 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.0036998 99.375 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 2 2 115610000 3579600 33136000 78891000 14980 1128 15721 65738;65739;65740;65741;65742 55433;55434 55433 2 3579600 16081000 16938000 VQDAYTLR HHPSEIAESHRFCDRVQDAYTLRCCPQVHG SHRFCDRVQDAYTLRCCPQVHGVVNDTIAF R V Q L R C 1 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 1 0 0 8 0 964.49779 P42357 P42357 391 398 HAL Histidine ammonia-lyase yes yes 2 0.0082256 95.909 By MS/MS By matching 5.25 4.26 2 1 1 3 1 23091000 12155000 0 10936000 14981 802 15722 65743;65744;65745;65746 55435;55436 55436 2 12125000 0 2356400 VQDDEVGDGTTSVTVLAAELLR GVDNPAAKVLVDMSRVQDDEVGDGTTSVTV DGTTSVTVLAAELLREAESLIAKKIHPQTI R V Q L R E 2 1 0 3 0 1 2 2 0 0 3 0 0 0 0 1 3 0 0 4 0 0 22 0 2287.1543 P78371 P78371 90 111 CCT2 T-complex protein 1 subunit beta yes yes 3 0.001812 55.228 By matching By MS/MS 4 0 2 1 1 5436300 921590 0 4514700 14982 1086 15723 65747;65748 55437 55437 1 719000 0 737400 VQDQDLPNTPHSK EVEENRIDVEILRMKVQDQDLPNTPHSKAV MKVQDQDLPNTPHSKAVYKILQGNENGNFI K V Q S K A 0 0 1 2 0 2 0 0 1 0 1 1 0 0 2 1 1 0 0 1 0 0 13 0 1477.7161 Q08554 Q08554 377 389 DSC1 Desmocollin-1 yes yes 2;3 0.0014249 101.93 By MS/MS 5.42 3.09 2 1 1 1 1 1 1 1 2 1 12 83982000 83982000 0 0 14983 1185 15724 65749;65750;65751;65752;65753;65754;65755;65756;65757;65758;65759;65760 55438;55439;55440;55441;55442;55443;55444;55445;55446 55439 9 85497000 0 0 VQDTSNTGLGEDIIHQLSK KESEDSDEENDFTEKVQDTSNTGLGEDIIH SNTGLGEDIIHQLSKSEEKELRKFRKIDYS K V Q S K S 0 0 1 2 0 2 1 2 1 2 2 1 0 0 0 2 2 0 0 1 0 0 19 0 2054.028 Q8IWA0 Q8IWA0 792 810 WDR75 WD repeat-containing protein 75 yes yes 2 0.011656 60.657 By MS/MS 1 0 1 1 3089800 0 0 3089800 14984 1574 15725 65761 55447 55447 1 0 0 665740 VQEFEHVNGR HVLTRIGVMSLIRKKVQEFEHVNGRWSMPE LIRKKVQEFEHVNGRWSMPELAEVEENKKM K V Q G R W 0 1 1 0 0 1 2 1 1 0 0 0 0 1 0 0 0 0 0 2 0 0 10 0 1213.584 Q14839 Q14839 1506 1515 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.0054326 78.098 By MS/MS 1 0 1 1 6452700 0 0 6452700 14985 1321 15726 65762 55448 55448 1 0 0 1390300 VQELPLAR RVMEEIRNLTVKDFRVQELPLARIKKIMKL LTVKDFRVQELPLARIKKIMKLDEDVKMIS R V Q A R I 1 1 0 0 0 1 1 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 8 0 924.53927 Q13952 Q13952 40 47 NFYC Nuclear transcription factor Y subunit gamma yes yes 2 0.011313 101.64 By MS/MS 6.5 1.5 1 1 2 8127400 0 0 8127400 14986 1278 15727 65763;65764 55449;55450 55450 2 0 0 1133600 VQELQDKLSPLAQELR VAPLGEEFREGARQKVQELQDKLSPLAQEL QELQDKLSPLAQELRDRARAHVETLRQQLA K V Q L R D 1 1 0 1 0 3 2 0 0 0 4 1 0 0 1 1 0 0 0 1 0 0 16 1 1866.0211 CON__P15497 CON__P15497 157 172 yes yes 3 8.0077E-06 148.44 By MS/MS By MS/MS By MS/MS 8.2 1.47 3 2 2 2 1 22731000 9819600 7000400 5910600 + 14987 59 15728 65765;65766;65767;65768;65769 55451;55452;55453;55454;55455 55451 5 20680000 22135000 1048800 VQENSAYICSR KVANYCRQVQQLLGKVQENSAYICSRRQRV LLGKVQENSAYICSRRQRVSFGVSEQQAVE K V Q S R R 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 2 0 0 1 1 0 0 11 0 1325.6034 Q9Y3T9 Q9Y3T9 577 587 NOC2L Nucleolar complex protein 2 homolog yes yes 2 0.012005 88.681 By MS/MS 3 0 1 1 3987600 0 0 3987600 14988 2277 15729 65770 55456 55456 1 0 0 773410 VQEQELTR QKANSSATETINKLKVQEQELTRLRIDYER ETINKLKVQEQELTRLRIDYERVSQERTVK K V Q T R L 0 1 0 0 0 2 2 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 8 0 1001.5142 P15924 P15924 1530 1537 DSP Desmoplakin yes yes 2 0.0016054 113.5 By MS/MS 6.67 4.03 1 1 1 3 4035000 4035000 0 0 14989 572 15730 65771;65772;65773 55457;55458;55459 55457 3 4062500 0 0 VQEQVHTLLSQDQAQAAR RSVGELPSTVESLQKVQEQVHTLLSQDQAQ QVHTLLSQDQAQAARLPPQDFLDRLSSLDN K V Q A R L 3 1 0 1 0 5 1 0 1 0 2 0 0 0 0 1 1 0 0 2 0 0 18 0 2021.029 Q07065 Q07065 506 523 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 6.627E-234 323.88 By MS/MS By MS/MS 3.14 0.639 1 4 2 3 4 150240000 0 82993000 67244000 14990 1176 15731 65774;65775;65776;65777;65778;65779;65780 55460;55461;55462;55463;55464;55465 55465 5 0 33687000 13030000 VQESTKGPDEAK GVMKTYRQREKQGSKVQESTKGPDEAKIKA GSKVQESTKGPDEAKIKALLERTGYTLDVT K V Q A K I 1 0 0 1 0 1 2 1 0 0 0 2 0 0 1 1 1 0 0 1 0 0 12 1 1287.6307 O43390 O43390 115 126 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2 0.040982 102.52 By MS/MS 3 0 1 1 888000 0 888000 0 14991 195 15732 65781 55466 55466 1 0 378560 0 VQFGVLSPDELKR PPSGDSACPLRTIKRVQFGVLSPDELKRMS KRVQFGVLSPDELKRMSVTEGGIKYPETTE R V Q K R M 0 1 0 1 0 1 1 1 0 0 2 1 0 1 1 1 0 0 0 2 0 0 13 1 1486.8144 P24928 P24928 21 33 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 3 0.023893 55.291 By MS/MS 1 0 1 1 4015900 0 4015900 0 14992 653 15733 65782 55467 55467 1 0 1962900 0 VQFLEQQNK QIKLLNNKFASFIDKVQFLEQQNKVLETKW ASFIDKVQFLEQQNKVLETKWNLLQQQTTT K V Q N K V 0 0 1 0 0 3 1 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 9 0 1132.5877 CON__P19013;P19013 CON__P19013 229 237 KRT4 Keratin, type II cytoskeletal 4 yes no 2 9.2284E-12 173.23 By MS/MS By matching 5.25 3.83 1 1 1 1 3 1 100470000 98574000 1898400 0 + 14993 61 15734 65783;65784;65785;65786 55468;55469;55470 55468 3 101080000 854860 0 VQFWDSATGTLVK FLSDGTIISVDSAGKVQFWDSATGTLVKSH GKVQFWDSATGTLVKSHLIANADVQSIAVA K V Q V K S 1 0 0 1 0 1 0 1 0 0 1 1 0 1 0 1 2 1 0 2 0 0 13 0 1450.7456 Q969X6 Q969X6 218 230 CIRH1A Cirhin yes yes 2 0.00046023 121.9 By MS/MS 3.5 0.5 1 1 2 19429000 0 19429000 0 14994 1746 15735 65787;65788 55471 55471 1 0 8107800 0 VQGFQVEYKDFPK GPLTRPSEQLDYLSRVQGFQVEYKDFPKNN SRVQGFQVEYKDFPKNNKNEFVSLINCSSQ R V Q P K N 0 0 0 1 0 2 1 1 0 0 0 2 0 2 1 0 0 0 1 2 0 0 13 1 1583.7984 O95793 O95793 499 511 STAU1 Double-stranded RNA-binding protein Staufen homolog 1 yes yes 2;3 0.0093298 112.13 By MS/MS 4 0 2 2 18022000 0 18022000 0 14995 341 15736 65789;65790 55472;55473 55472 2 0 5980700 0 VQGSDSDEEVVVATTR KEKVEFGVLVSFAYKVQGSDSDEEVVVATT QGSDSDEEVVVATTRIETMLGDVAVAVHPK K V Q T R I 1 1 0 2 0 1 2 1 0 0 0 0 0 0 0 2 2 0 0 4 0 0 16 0 1690.801 P26640 P26640 522 537 VARS Valine--tRNA ligase yes yes 2 5.6059E-17 110.29 By MS/MS 2 0 1 1 0 0 0 0 14996 673 15737 65791 55474 55474 1 0 0 0 VQHQDALQISDVVMASLLR LQSLLCATLQNVLRKVQHQDALQISDVVMA DALQISDVVMASLLRMFQSTAGSGGVQEDA K V Q L R M 2 1 0 2 0 3 0 0 1 1 3 0 1 0 0 2 0 0 0 3 0 0 19 0 2122.1205 Q14974 Q14974 595 613 KPNB1 Importin subunit beta-1 yes yes 2;3 9.6769E-09 139.65 By MS/MS By MS/MS 2.6 0.49 2 3 1 4 34779000 0 2399200 32380000 14997 1325 15738 65792;65793;65794;65795;65796 55475;55476;55477;55478 55478 4 0 1080400 6326200 VQHVIHYQVPR LLATDVAARGLDIPKVQHVIHYQVPRTSEI DIPKVQHVIHYQVPRTSEIYVHRSGRTARA K V Q P R T 0 1 0 0 0 2 0 0 2 1 0 0 0 0 1 0 0 0 1 3 0 0 11 0 1374.7521 Q9GZR7 Q9GZR7 656 666 DDX24 ATP-dependent RNA helicase DDX24 yes yes 2 0.060566 67.563 By MS/MS 2 0 1 1 0 0 0 0 14998 1952 15739 65797 55479 55479 1 0 0 0 VQIAVANAQELLQR GSGKLDPGLIMEQVKVQIAVANAQELLQRM KVQIAVANAQELLQRMTDKCFRKCIGKPGG K V Q Q R M 3 1 1 0 0 3 1 0 0 1 2 0 0 0 0 0 0 0 0 2 0 0 14 0 1551.8733 Q9Y5L4 Q9Y5L4 28 41 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes yes 2 3.8627E-13 185.18 By MS/MS By MS/MS By MS/MS 9.75 0.433 1 3 1 1 2 34810000 865270 13869000 20077000 14999 2298 15740 65798;65799;65800;65801 55480;55481;55482;55483 55482 4 1576400 70163000 13135000 VQIDTFK FTMRKHGGEKGVPFRVQIDTFKENENGEYT GEKGVPFRVQIDTFKENENGEYTEHLHSAS R V Q F K E 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 0 1 0 0 1 0 0 7 0 849.45962 Q12800;Q9NZI6 Q12800 211 217 TFCP2;TFCP2L1 Alpha-globin transcription factor CP2;Transcription factor CP2-like protein 1 yes no 2 0.043987 79.469 By MS/MS 4 0 1 1 3300400 0 0 3300400 15000 1200 15741 65802 55484 55484 1 0 0 539060 VQIFEYNENTR IAVGSDDSSPNAMAKVQIFEYNENTRKYAK AMAKVQIFEYNENTRKYAKAETLMTVTDPV K V Q T R K 0 1 2 0 0 1 2 0 0 1 0 0 0 1 0 0 1 0 1 1 0 0 11 0 1411.6732 Q96EE3 Q96EE3 197 207 SEH1L Nucleoporin SEH1 yes yes 2 6.1033E-06 152.34 By MS/MS 6 0 1 1 5642600 0 0 5642600 15001 1773 15742 65803 55485 55485 1 0 0 844190 VQIHDTRPVKPELALVYIEYLLTHPK TEHAQAKSNTASKGRVQIHDTRPVKPELAL ELALVYIEYLLTHPKNRECLLSAPRKKLNH R V Q P K N 1 1 0 1 0 1 2 0 2 2 4 2 0 0 3 0 2 0 2 3 0 0 26 2 3071.7172 Q86XI2 Q86XI2 747 772 NCAPG2 Condensin-2 complex subunit G2 yes yes 5 0.050687 23.89 By MS/MS 2 0 1 1 1248000 0 0 1248000 15002 1558 15743 65804 55486 55486 1 0 0 282010 VQISPDSGGLPER GGEQINKIQQDSGCKVQISPDSGGLPERSV CKVQISPDSGGLPERSVSLTGAPESVQKAK K V Q E R S 0 1 0 1 0 1 1 2 0 1 1 0 0 0 2 2 0 0 0 1 0 0 13 0 1353.6888 Q92945 Q92945 178 190 KHSRP Far upstream element-binding protein 2 yes yes 2 6.8806E-12 168.22 By MS/MS By MS/MS 2.5 0.957 1 2 2 1 3 3 77406000 0 34419000 42987000 15003 1733 15744 65805;65806;65807;65808;65809;65810 55487;55488;55489;55490;55491 55490 5 0 14531000 8482300 VQISQLHQEIQR QVSAQLHGDRMQETKVQISQLHQEIQRLQS ETKVQISQLHQEIQRLQSQTENLKKQNASL K V Q Q R L 0 1 0 0 0 4 1 0 1 2 1 0 0 0 0 1 0 0 0 1 0 0 12 0 1477.8001 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 328 339 KRT78 Keratin, type II cytoskeletal 78 yes no 2;3 2.6893E-08 171.09 By MS/MS By MS/MS 5.48 3.16 4 2 2 3 2 1 3 2 2 4 15 10 244400000 169180000 0 75217000 + 15004 94 15745 65811;65812;65813;65814;65815;65816;65817;65818;65819;65820;65821;65822;65823;65824;65825;65826;65827;65828;65829;65830;65831;65832;65833;65834;65835 55492;55493;55494;55495;55496;55497;55498;55499;55500;55501;55502;55503;55504;55505;55506;55507;55508;55509 55496 18 164420000 0 32074000 VQKVMVQPINLIFR ______________________________ KVQKVMVQPINLIFRYLQNRSRIQVWLYEQ K V Q F R Y 0 1 1 0 0 2 0 0 0 2 1 1 1 1 1 0 0 0 0 3 0 0 14 1 1683.9858 P62304 P62304 10 23 SNRPE Small nuclear ribonucleoprotein E yes yes 3 0.053423 44.511 By MS/MS 10 0 1 1 662510 0 662510 0 15005 1018 15746 65836 55510 55510 1 0 3351700 0 VQLISGPPAK KDLCFTWREFSDFIRVQLISGPPAKLLLID SDFIRVQLISGPPAKLLLIDWPELKESIPV R V Q A K L 1 0 0 0 0 1 0 1 0 1 1 1 0 0 2 1 0 0 0 1 0 0 10 0 1008.5968 A6NHR9 A6NHR9 1247 1256 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.0041356 99.802 By MS/MS By matching 1.5 0.5 1 1 1 1 12089000 0 10178000 1910700 15006 15 15747 65837;65838 55511 55511 1 0 4974800 431780 VQLPPEIQLAQR ______________________________ VSRVQLPPEIQLAQRLAGNEQVTRDRAVRK R V Q Q R L 1 1 0 0 0 3 1 0 0 1 2 0 0 0 2 0 0 0 0 1 0 0 12 0 1390.7932 P56182 P56182 5 16 RRP1 Ribosomal RNA processing protein 1 homolog A yes yes 2;3 0.0077945 81.525 By MS/MS By MS/MS 4.25 0.433 3 1 3 1 34555000 0 16707000 17848000 15007 948 15748 65839;65840;65841;65842 55512;55513;55514;55515 55512 4 0 5484800 2915100 VQLSLLQTELKEEIELLK TERAARVLGLETEHKVQLSLLQTELKEEIE SLLQTELKEEIELLKIENRNLYGKLQHETR K V Q L K I 0 0 0 0 0 2 4 0 0 1 6 2 0 0 0 1 1 0 0 1 0 0 18 1 2125.2246 O95613 O95613 679 696 PCNT Pericentrin yes yes 3 0.0082712 54.103 By MS/MS 1 0 1 1 2452300 0 0 2452300 15008 331 15749 65843 55516 55516 1 0 0 528390 VQMDMLQVLLR QTGRRDTKVVSMVGRVQMDMLQVLLREYKL MVGRVQMDMLQVLLREYKLRSYTLNAVSFH R V Q L R E 0 1 0 1 0 2 0 0 0 0 3 0 2 0 0 0 0 0 0 2 0 0 11 0 1344.7258 P28340 P28340 455 465 POLD1 DNA polymerase delta catalytic subunit yes yes 2 1.4905E-07 114.89 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 2164500 0 1275600 888830 15009 691 15750 65844;65845;65846 55517;55518 55518 0 0 574430 194990 VQMIMLAVGEVEDSIFK TGGYLTESGYVNLQRVQMIMLAVGEVEDSI MIMLAVGEVEDSIFKKRKDDEDSFRRRQKE R V Q F K K 1 0 0 1 0 1 2 1 0 2 1 1 2 1 0 1 0 0 0 3 0 0 17 0 1907.9737 Q9H0D6 Q9H0D6 389 405 XRN2 5-3 exoribonuclease 2 yes yes 2;3 6.1723E-13 97.551 By MS/MS 2 0 2 2 3925800 0 0 3925800 15010 1960 15751 65847;65848 55519;55520 55520 2 0 0 887160 VQMIMLAVGEVEDSIFKK TGGYLTESGYVNLQRVQMIMLAVGEVEDSI IMLAVGEVEDSIFKKRKDDEDSFRRRQKEK R V Q K K R 1 0 0 1 0 1 2 1 0 2 1 2 2 1 0 1 0 0 0 3 0 0 18 1 2036.0686 Q9H0D6 Q9H0D6 389 406 XRN2 5-3 exoribonuclease 2 yes yes 3 0.0006819 73.11 By MS/MS 2 0 1 1 7533100 0 0 7533100 15011 1960 15752 65849 55521 55521 1 0 0 1702300 VQMLLSDR KGNNPKGYLPSHYERVQMLLSDRFLGFFMV LPSHYERVQMLLSDRFLGFFMVPAQSSWNY R V Q D R F 0 1 0 1 0 1 0 0 0 0 2 0 1 0 0 1 0 0 0 1 0 0 8 0 960.50625 Q6P2Q9 Q6P2Q9 2259 2266 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 1.0738E-13 179.73 By MS/MS By MS/MS 1.75 0.829 2 1 1 2 2 63934000 0 31401000 32532000 15012 1490 15753 65850;65851;65852;65853 55522;55523 55523 2 0 15213000 6889300 VQNATLAVANITNADSATR KDSVTISVDGVVYYRVQNATLAVANITNAD TLAVANITNADSATRLLAQTTLRNVLGTKN R V Q T R L 5 1 3 1 0 1 0 0 0 1 1 0 0 0 0 1 3 0 0 2 0 0 19 0 1928.9916 P27105 P27105 126 144 STOM Erythrocyte band 7 integral membrane protein yes yes 2 7.9607E-52 220.21 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 27383000 0 7253500 20130000 15013 675 15754 65854;65855;65856;65857 55524;55525 55525 2 0 3535100 3365000 VQNTSLEAIVQNASSDNQGIQLSAVQAAR HEDICEDSDIDGDYRVQNTSLEAIVQNASS SDNQGIQLSAVQAARKLLSSDRNPPIDDLI R V Q A R K 5 1 3 1 0 5 1 1 0 2 2 0 0 0 0 4 1 0 0 3 0 0 29 0 3011.5272 O00629 O00629 68 96 KPNA4 Importin subunit alpha-3 yes yes 3 3.7082E-15 89.773 By MS/MS 4 0 1 1 8062700 0 0 8062700 15014 132 15755 65858 55526 55526 1 0 0 1316900 VQPEPEPEPGLLLEVEEPGTEEER PTLPPALPPPESPPKVQPEPEPEPGLLLEV GLLLEVEEPGTEEERGADTAPTLAPEALPS K V Q E R G 0 1 0 0 0 1 9 2 0 0 3 0 0 0 5 0 1 0 0 2 0 0 24 0 2701.297 Q8IZL8 Q8IZL8 995 1018 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 3 1.8445E-08 88.222 By MS/MS 1.5 0.5 1 1 2 10453000 0 0 10453000 15015 1596 15756 65859;65860 55527 55527 1 0 0 2334500 VQPVMAPDVPATPVAPTESQTVLDALQQR QAPTAPSVIPPAVERVQPVMAPDVPATPVA APTESQTVLDALQQRLNKYREAGIQARSGG R V Q Q R L 4 1 0 2 0 4 1 0 0 0 2 0 1 0 5 1 3 0 0 5 0 0 29 0 3057.5805 Q5T0F9 Q5T0F9 363 391 CC2D1B Coiled-coil and C2 domain-containing protein 1B yes yes 3 3.1007E-05 50.865 By MS/MS 2 0 1 1 2046300 0 2046300 0 15016 1447 15757 65861 55528 55528 1 0 921490 0 VQPYLDDFQK LRQEMSKDLEEVKAKVQPYLDDFQKKWQEE EVKAKVQPYLDDFQKKWQEEMELYRQKVEP K V Q Q K K 0 0 0 2 0 2 0 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 10 0 1251.6136 P02647 P02647 121 130 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.024104 80.684 By MS/MS 9 0 1 1 124600000 124600000 0 0 15017 389 15758 65862 55529 55529 1 69939000 0 0 VQPYLDDFQKK LRQEMSKDLEEVKAKVQPYLDDFQKKWQEE VKAKVQPYLDDFQKKWQEEMELYRQKVEPL K V Q K K W 0 0 0 2 0 2 0 0 0 0 1 2 0 1 1 0 0 0 1 1 0 0 11 1 1379.7085 P02647 P02647 121 131 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 0.001344 116.73 By MS/MS 9 0.707 1 2 1 4 89567000 89567000 0 0 15018 389 15759 65863;65864;65865;65866 55530;55531 55531 2 54234000 0 0 VQPYLDEFQK LRQEMHKDLEEVKQKVQPYLDEFQKKWHEE EVKQKVQPYLDEFQKKWHEEVEIYRQKVAP K V Q Q K K 0 0 0 1 0 2 1 0 0 0 1 1 0 1 1 0 0 0 1 1 0 0 10 0 1265.6292 CON__P15497 CON__P15497 120 129 yes yes 2 0.00015272 142.79 By MS/MS By MS/MS By MS/MS 7.71 1.28 1 3 1 1 1 2 2 3 1039500000 186710000 25907000 826880000 + 15019 59 15760 65867;65868;65869;65870;65871;65872;65873 55532;55533;55534;55535;55536;55537;55538 55535 7 298780000 14647000 406580000 VQPYLDEFQKK LRQEMHKDLEEVKQKVQPYLDEFQKKWHEE VKQKVQPYLDEFQKKWHEEVEIYRQKVAPL K V Q K K W 0 0 0 1 0 2 1 0 0 0 1 2 0 1 1 0 0 0 1 1 0 0 11 1 1393.7242 CON__P15497 CON__P15497 120 130 yes yes 2;3 0.001146 117.89 By MS/MS By MS/MS By MS/MS 8.53 1.36 6 1 2 6 6 4 5 598430000 270660000 67401000 260370000 + 15020 59 15761 65874;65875;65876;65877;65878;65879;65880;65881;65882;65883;65884;65885;65886;65887;65888 55539;55540;55541;55542;55543;55544;55545;55546;55547;55548;55549 55545 10 520580000 142910000 255510000 VQQLQISVDQHGDNLK AQRSKAEAEALYQTKVQQLQISVDQHGDNL QQLQISVDQHGDNLKNTKSEIAELNRMIQR K V Q L K N 0 0 1 2 0 4 0 1 1 1 2 1 0 0 0 1 0 0 0 2 0 0 16 0 1820.9381 CON__P19013;P19013 CON__P19013 408 423 KRT4 Keratin, type II cytoskeletal 4 yes no 2;3 1.5986E-90 251.75 By MS/MS 1 0 2 2 91837000 91837000 0 0 + 15021 61 15762 65889;65890 55550;55551 55551 2 91837000 0 0 VQQLVPK YTTVTPQIINSKWEKVQQLVPKRDHALLEE IINSKWEKVQQLVPKRDHALLEEQSKQQSN K V Q P K R 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 7 0 810.49634 O43707 O43707 626 632 ACTN4 Alpha-actinin-4 yes yes 2 0.041213 75.269 By MS/MS By MS/MS 2 0 2 1 1 15440000 0 12165000 3274400 15022 210 15763 65891;65892 55552;55553 55552 1 0 5478200 739960 VQQSSESSTSSPSQHEATPGAR HIKTLEEIKLEKALRVQQSSESSTSSPSQH STSSPSQHEATPGARRLLRITKRTGMKEEK R V Q A R R 2 1 0 0 0 3 2 1 1 0 0 0 0 0 2 7 2 0 0 1 0 0 22 0 2257.0207 O75152;A0A1B0GTU1 O75152 485 506 ZC3H11A Zinc finger CCCH domain-containing protein 11A yes no 3 8.3718E-07 79.568 By MS/MS By MS/MS 2.5 0.5 1 1 1 1 2296100 0 968460 1327600 15023 244 15764 65893;65894 55554;55555 55555 2 0 436110 257490 VQQTVQDLFGR IGEVILVGGMTRMPKVQQTVQDLFGRAPSK RMPKVQQTVQDLFGRAPSKAVNPDEAVAIG K V Q G R A 0 1 0 1 0 3 0 1 0 0 1 0 0 1 0 0 1 0 0 2 0 0 11 0 1289.6728 P38646 P38646 395 405 HSPA9 Stress-70 protein, mitochondrial yes yes 2 1.6152E-46 218.58 By MS/MS By MS/MS By matching 2.75 0.433 1 3 1 2 1 78564000 7986700 37011000 33567000 15024 774 15765 65895;65896;65897;65898 55556;55557;55558 55558 3 9214800 15862000 6510300 VQSDGQIVLVDDWIK TLVTPLQLLLFASKKVQSDGQIVLVDDWIK VQSDGQIVLVDDWIKLQISHEAAACITGLR K V Q I K L 0 0 0 3 0 2 0 1 0 2 1 1 0 0 0 1 0 1 0 3 0 0 15 0 1713.8938 Q08211 Q08211 1075 1089 DHX9 ATP-dependent RNA helicase A yes yes 2 0.00056092 107.14 By MS/MS By MS/MS 1.5 0.5 2 2 1 3 46962000 0 1988300 44973000 15025 1182 15766 65899;65900;65901;65902 55559;55560;55561;55562 55561 4 0 971840 10064000 VQSGSESVIQEYVDLR KAQLEPVASPAKKPKVQSGSESVIQEYVDL QSGSESVIQEYVDLRTHYSELTTLTSQYIK K V Q L R T 0 1 0 1 0 2 2 1 0 1 1 0 0 0 0 3 0 0 1 3 0 0 16 0 1807.8952 Q15149 Q15149 1442 1457 PLEC Plectin yes yes 2 4.409E-26 198.49 By MS/MS By MS/MS 1 0 2 1 1 20489000 0 6501000 13988000 15026 1348 15767 65903;65904 55563;55564 55563 2 0 3177600 3013900 VQSHILHLEHDLVHVTR AMVKRYLTSFPIDDRVQSHILHLEHDLVHV SHILHLEHDLVHVTRKNHARQAGVRGLGHQ R V Q T R K 0 1 0 1 0 1 1 0 4 1 3 0 0 0 0 1 1 0 0 3 0 0 17 0 2032.0966 P07199 P07199 567 583 CENPB Major centromere autoantigen B yes yes 4 0.0045961 58.158 By MS/MS 3 0 1 1 9705900 0 0 9705900 15027 455 15768 65905 55565 55565 1 0 0 1882500 VQSLQATFGTFESILR QREELGQGLQGVEQKVQSLQATFGTFESIL QSLQATFGTFESILRSSQHKQDLTEKAVKQ K V Q L R S 1 1 0 0 0 2 1 1 0 1 2 0 0 2 0 2 2 0 0 1 0 0 16 0 1795.9468 Q07065 Q07065 162 177 CKAP4 Cytoskeleton-associated protein 4 yes yes 2;3 2.0874E-18 187.44 By MS/MS By MS/MS 3 0.632 1 3 1 4 1 7635400 0 5717000 1918500 15028 1176 15769 65906;65907;65908;65909;65910 55566;55567;55568 55568 3 0 2399300 372090 VQSYEKEEDLLQAWSTFIR LALTLRPCAPILGAKVQSYEKEEDLLQAWS EKEEDLLQAWSTFIRIMDPDVITGYNIQNF K V Q I R I 1 1 0 1 0 2 3 0 0 1 2 1 0 1 0 2 1 1 1 1 0 0 19 1 2341.159 P28340 P28340 368 386 POLD1 DNA polymerase delta catalytic subunit yes yes 3 2.1712E-09 144.51 By MS/MS 2 0 1 1 801040 0 0 801040 15029 691 15770 65911 55569 55569 1 0 0 181020 VQTLSNQPLLK AAYNPGQAVPWNAVKVQTLSNQPLLKSPAP NAVKVQTLSNQPLLKSPAPPLLHVAALGQK K V Q L K S 0 0 1 0 0 2 0 0 0 0 3 1 0 0 1 1 1 0 0 1 0 0 11 0 1239.7187 Q8N163 Q8N163 113 123 CCAR2 Cell cycle and apoptosis regulator protein 2 yes yes 2 0.053687 72.928 By MS/MS 2 0 1 1 7990000 0 0 7990000 15030 1598 15771 65912 55570 55570 1 0 0 1805600 VQVALEELQDLK LELTDTGLLSGSEERVQVALEELQDLKGVW EERVQVALEELQDLKGVWSELSKVWEQIDQ R V Q L K G 1 0 0 1 0 2 2 0 0 0 3 1 0 0 0 0 0 0 0 2 0 0 12 0 1383.7609 Q14204 Q14204 1319 1330 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.007656 98.04 By MS/MS 1 0 1 1 3872500 0 3872500 0 15031 1292 15772 65913 55571 55571 1 0 1892800 0 VQVEYKGETK KHWPFMVVNDAGRPKVQVEYKGETKSFYPE AGRPKVQVEYKGETKSFYPEEVSSMVLTKM K V Q T K S 0 0 0 0 0 1 2 1 0 0 0 2 0 0 0 0 1 0 1 2 0 0 10 1 1179.6136 P54652;P11142 P11142 103 112 HSPA2;HSPA8 Heat shock-related 70 kDa protein 2;Heat shock cognate 71 kDa protein no no 2 0.0005387 148.52 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 53949000 0 15603000 38346000 15032 517;930 15773 65914;65915;65916;65917 55572;55573 55572 2 0 6651600 7464000 VQVSESGVHRPHVAGIHGR GPIPGIPVGTMWRFRVQVSESGVHRPHVAG ESGVHRPHVAGIHGRSNDGAYSLVLAGGYE R V Q G R S 1 2 0 0 0 1 1 3 3 1 0 0 0 0 1 2 0 0 0 4 0 0 19 1 2021.0667 Q96T88 Q96T88 434 452 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 3;4;5 2.3194E-09 117.4 By MS/MS By MS/MS 2.64 1.34 3 5 2 2 2 2 12 170090000 0 9237400 160850000 15033 1841 15774 65918;65919;65920;65921;65922;65923;65924;65925;65926;65927;65928;65929;65930;65931 55574;55575;55576;55577;55578;55579;55580;55581;55582;55583;55584 55583 10 0 4159700 31770000 VQVVGTYR ILDDDLVDKAKPGDRVQVVGTYRCLPGKKG KAKPGDRVQVVGTYRCLPGKKGGYTSGTFR R V Q Y R C 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 1 3 0 0 8 0 920.50797 P25205 P25205 235 242 MCM3 DNA replication licensing factor MCM3 yes yes 2 0.067477 75.243 By matching By MS/MS 2.5 0.5 1 1 1 1 14116000 6846500 0 7269300 15034 655 15775 65932;65933 55585 55585 0 8249200 0 1409900 VQWGVFVPR EPRPLYIQKGISREKVQWGVFVPRDVPESF GISREKVQWGVFVPRDVPESFTSEAYQWLN K V Q P R D 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 1 0 3 0 0 9 0 1086.5974 Q8IWA0 Q8IWA0 629 637 WDR75 WD repeat-containing protein 75 yes yes 2 0.00060882 127.84 By MS/MS 1 0 1 1 4314500 0 0 4314500 15035 1574 15776 65934 55586 55586 1 0 0 929630 VQYEGFRPGMYVR QLNRAEFEDQDDEARVQYEGFRPGMYVRIE ARVQYEGFRPGMYVRIEIENVPCEFVQNFD R V Q V R I 0 2 0 0 0 1 1 2 0 0 0 0 1 1 1 0 0 0 2 2 0 0 13 1 1600.782 Q14692 Q14692 875 887 BMS1 Ribosome biogenesis protein BMS1 homolog yes yes 3 7.4232E-05 128.85 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 21729000 0 4606600 17123000 15036 1315 15777 65935;65936;65937;65938 55587;55588 55587 2 0 2074400 3561100 VQYTETEPYHNYR EIERFWRGGQYENFRVQYTETEPYHNYRER FRVQYTETEPYHNYRERERERERENRQRER R V Q Y R E 0 1 1 0 0 1 2 0 1 0 0 0 0 0 1 0 2 0 3 1 0 0 13 0 1698.7638 Q86VM9 Q86VM9 390 402 ZC3H18 Zinc finger CCCH domain-containing protein 18 yes yes 3 0.0025374 84.169 By MS/MS 1.5 0.5 1 1 2 31380000 0 0 31380000 15037 1553 15778 65939;65940 55589;55590 55590 2 0 0 6933400 VRDDVAEYKR ERMAQRFYNLVLLPRVRDDVAEYKRLNFHL VLLPRVRDDVAEYKRLNFHLYMALKKALFK R V R K R L 1 2 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 10 2 1249.6415 Q13895 Q13895 258 267 BYSL Bystin yes yes 3 0.057819 54.471 By MS/MS 5 0 1 1 1364900 0 1364900 0 15038 1276 15779 65941 55591 55591 1 0 351830 0 VRDKLNNLVLFDK KSGGKAKKKKWSKGKVRDKLNNLVLFDKAT GKVRDKLNNLVLFDKATYDKLCKEVPNYKL K V R D K A 0 1 2 2 0 0 0 0 0 0 3 2 0 1 0 0 0 0 0 2 0 0 13 2 1572.8988 P62851 P62851 40 52 RPS25 40S ribosomal protein S25 yes yes 3 0.02783 61.657 By matching By MS/MS 7.5 0.5 1 1 1 1 9026100 1245600 7780500 0 15039 1039 15780 65942;65943 55592 55592 1 2684600 3539900 0 VREEEIEVDSR KRKKGEKRASSPFRRVREEEIEVDSRVADN PFRRVREEEIEVDSRVADNSFDAKRGAAGD R V R S R V 0 2 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 11 1 1359.663 Q14978 Q14978 628 638 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 3 0.00029293 111.52 By MS/MS 4.86 2.9 1 1 1 1 1 1 1 7 89724000 0 0 89724000 15040 1326 15781 65944;65945;65946;65947;65948;65949;65950 55593;55594;55595;55596 55593 4 0 0 19030000 VREEVPLELVEAHVK VASAAAKAALEEFSRVREEVPLELVEAHVK VREEVPLELVEAHVKKVQEAARASGKVDPT R V R V K K 1 1 0 0 0 0 4 0 1 0 2 1 0 0 1 0 0 0 0 4 0 0 15 1 1745.9676 Q92922 Q92922 725 739 SMARCC1 SWI/SNF complex subunit SMARCC1 yes yes 3 0.011726 59.513 By MS/MS 1.5 0.5 1 1 2 20820000 0 0 20820000 15041 1731 15782 65951;65952 55597 55597 1 0 0 4628000 VREMEEEAEK DGAIEDPELEAIKARVREMEEEAEKLKELQ AIKARVREMEEEAEKLKELQNEVEKQMNMS R V R E K L 1 1 0 0 0 0 5 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 10 1 1248.5656 Q86U42 Q86U42 126 135 PABPN1 Polyadenylate-binding protein 2 yes yes 3 0.060058 48.188 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 4824600 0 2209400 2615200 15042 1544 15783 65953;65954;65955;65956 55598;55599 55598 2 0 569530 405880 VREQLGPVTQEFWDNLEK KLLDNWDTLASTLSKVREQLGPVTQEFWDN QLGPVTQEFWDNLEKETASLRQEMHKDLEE K V R E K E 0 1 1 1 0 2 3 1 0 0 2 1 0 1 1 0 1 1 0 2 0 0 18 1 2187.096 CON__P15497 CON__P15497 83 100 yes yes 2;3 3.9752E-09 160.78 By MS/MS By MS/MS 7.5 0.5 1 1 1 1 18309000 5765200 0 12544000 + 15043 59 15784 65957;65958 55600;55601 55600 2 4949600 0 2225800 VREWYGYHFPELVK LLDQLDKDINTFSMRVREWYGYHFPELVKI RVREWYGYHFPELVKIINDNATYCRLAQFI R V R V K I 0 1 0 0 0 0 2 1 1 0 1 1 0 1 1 0 0 1 2 2 0 0 14 1 1821.9202 O00567 O00567 189 202 NOP56 Nucleolar protein 56 yes yes 4 0.052245 41.378 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 17745000 0 3660100 14085000 15044 130 15785 65959;65960;65961 55602;55603 55602 2 0 1560300 2669400 VREYELR VRGAKAEEILEKGLKVREYELRKNNFSDTG EILEKGLKVREYELRKNNFSDTGNFGFGIQ K V R L R K 0 2 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 1 963.51378 P62913 P62913 89 95 RPL11 60S ribosomal protein L11 yes yes 2 0.021855 131.06 By MS/MS 7 0 1 1 34521000 0 0 34521000 15045 1051 15786 65962 55604 55604 1 0 0 6125500 VRMNVLADALK ______________________________ ______________________________ M V R L K S 2 1 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 11 1 1228.6962 P62244 P62244 2 12 RPS15A 40S ribosomal protein S15a yes yes 3 0.03794 53.211 By MS/MS 9 0 2 2 0 0 0 0 15046 1009 15787;15788 65963;65964 55605;55606 55605 481 2 0 0 0 VRPAELEQFESTIGFK KILKISYKRSNFYIKVRPAELEQFESTIGF RPAELEQFESTIGFKLPNHRAAKRLWKVCV K V R F K L 1 1 0 0 0 1 3 1 0 1 1 1 0 2 1 1 1 0 0 1 0 0 16 1 1849.9574 O43491 O43491 459 474 EPB41L2 Band 4.1-like protein 2 yes yes 3 0.0015402 77.324 By MS/MS 2 0 1 1 1713700 0 1713700 0 15047 199 15789 65965 55607 55607 1 0 771720 0 VRPASSAASVYAGAGGSGSR TNYRSLGSVRTPSQRVRPASSAASVYAGAG SAASVYAGAGGSGSRISVSRSVWGGSVGSA R V R S R I 5 2 0 0 0 0 0 4 0 0 0 0 0 0 1 5 0 0 1 2 0 0 20 1 1806.8973 CON__P05784 CON__P05784 27 46 yes yes 2;3 1.8976E-35 204.13 By MS/MS 5 0 2 2 34626000 0 0 34626000 + 15048 48 15790 65966;65967 55608;55609 55609 2 0 0 4829700 VRPAYSLEPR PRDLERERDYPFYERVRPAYSLEPRVGAGA PFYERVRPAYSLEPRVGAGAGAAPFREVDE R V R P R V 1 2 0 0 0 0 1 0 0 0 1 0 0 0 2 1 0 0 1 1 0 0 10 1 1186.6459 Q96T37 Q96T37 339 348 RBM15 Putative RNA-binding protein 15 yes yes 2 0.055917 93.098 By MS/MS 2 0 1 1 7098100 0 0 7098100 15049 1838 15791 65968 55610 55610 1 0 0 1604000 VRPCVVYGGADIGQQIR VQIYEEARKFSYRSRVRPCVVYGGADIGQQ PCVVYGGADIGQQIRDLERGCHLLVATPGR R V R I R D 1 2 0 1 1 2 0 3 0 2 0 0 0 0 1 0 0 0 1 3 0 0 17 1 1886.9785 O00571;O15523 O00571 295 311 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2;3 2.0296E-91 255.08 By MS/MS 3 0 2 2 11361000 0 0 11361000 15050 131 15792 65969;65970 55611;55612 55611 2 0 0 2203400 VRPDYTAQNLDHGK WLWQHDEPCYWRLTRVRPDYTAQNLDHGKA RVRPDYTAQNLDHGKAWGILTFKGKTESEA R V R G K A 1 1 1 2 0 1 0 1 1 0 1 1 0 0 1 0 1 0 1 1 0 0 14 1 1612.7958 P82930 P82930 100 113 MRPS34 28S ribosomal protein S34, mitochondrial yes yes 3 0.00090816 91.845 By matching By MS/MS By MS/MS 6.5 0.5 2 2 1 1 2 24525000 1109300 5949000 17467000 15051 1102 15793 65971;65972;65973;65974 55613;55614 55613 2 1477000 3416000 3031400 VRPVLPGEPTPPPGLLLFPSGPGGPSDPPTR NQLQELKGNIRVFCRVRPVLPGEPTPPPGL LFPSGPGGPSDPPTRLSLSRSDERRGTLSG R V R T R L 0 2 0 1 0 0 1 5 0 0 4 0 0 1 11 2 2 0 0 2 0 0 31 1 3100.671 Q9BW19 Q9BW19 317 347 KIFC1 Kinesin-like protein KIFC1 yes yes 3 1.8535E-15 86.543 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 20685000 0 8776400 11909000 15052 1919 15794 65975;65976;65977 55615;55616 55615 2 0 3597500 2309800 VRQQAADLISR ICGTVLWRLNNKSAKVRQQAADLISRTAVV KSAKVRQQAADLISRTAVVMKTCQEEKLMG K V R S R T 2 2 0 1 0 2 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 11 1 1255.6997 O75533 O75533 947 957 SF3B1 Splicing factor 3B subunit 1 yes yes 2;3 0.025892 92.611 By MS/MS 2 0 2 2 5442700 0 5442700 0 15053 270 15795 65978;65979 55617;55618 55617 2 0 2450900 0 VRTDITYPAGFMDVISIDK VKKICMQRFIKIDGKVRTDITYPAGFMDVI ITYPAGFMDVISIDKTGENFRLIYDTKGRF K V R D K T 1 1 0 3 0 0 0 1 0 3 0 1 1 1 1 1 2 0 1 2 0 0 19 1 2140.0874 P62701 P62701 76 94 RPS4X 40S ribosomal protein S4, X isoform yes yes 3 0.00016348 79.568 By MS/MS 6 0 1 1 2709500 0 2709500 0 15054 1029 15796 65980 55619 55619 1 0 937930 0 VRTELADKVTK AQLQELQVKFNEGERVRTELADKVTKLQVE EGERVRTELADKVTKLQVELDNVTGLLSQS R V R T K L 1 1 0 1 0 0 1 0 0 0 1 2 0 0 0 0 2 0 0 2 0 0 11 2 1258.7245 P35579 P35579 1267 1277 MYH9 Myosin-9 yes yes 3 0.00023942 116.71 By MS/MS 1.5 0.5 1 1 2 14670000 0 14670000 0 15055 752 15797 65981;65982 55620 55620 1 0 7085000 0 VRVELSNGEK DAVRELDGRTLCGCRVRVELSNGEKRSRNR LCGCRVRVELSNGEKRSRNRGPPPSWGRRP R V R E K R 0 1 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 10 1 1129.6091 P84103 P84103 76 85 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 1.5926E-28 196.07 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 68204000 0 12189000 56014000 15056 1113 15798 65983;65984;65985;65986 55621;55622 55621 2 0 6843700 9911200 VRVELSNGEKR DAVRELDGRTLCGCRVRVELSNGEKRSRNR CGCRVRVELSNGEKRSRNRGPPPSWGRRPR R V R K R S 0 2 1 0 0 0 2 1 0 0 1 1 0 0 0 1 0 0 0 2 0 0 11 2 1285.7102 P84103 P84103 76 86 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 3 0.0088439 79.492 By MS/MS By matching 7 0 2 1 1 7095100 0 6228000 867120 15057 1113 15799 65987;65988 55623 55623 1 0 3576100 153860 VRVELSTGMPR DAVRGLDGKVICGSRVRVELSTGMPRRSRF CGSRVRVELSTGMPRRSRFDRPPARRPFDP R V R P R R 0 2 0 0 0 0 1 1 0 0 1 0 1 0 1 1 1 0 0 2 0 0 11 1 1243.6707 Q16629 Q16629 77 87 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2;3 8.4901E-46 221.59 By MS/MS By MS/MS 6.2 1.08 1 1 4 3 1 5 5 214910000 0 167810000 47098000 15058 1392 15800 65989;65990;65991;65992;65993;65994;65995;65996;65997;65998 55624;55625;55626;55627;55628 55625 5 0 59072000 7103700 VSALEVLPDR GFDCVYGLELNKDERVSALEVLPDRVATSR NKDERVSALEVLPDRVATSRISDAHLADTM R V S D R V 1 1 0 1 0 0 1 0 0 0 2 0 0 0 1 1 0 0 0 2 0 0 10 0 1097.6081 Q9Y657 Q9Y657 108 117 SPIN1 Spindlin-1 yes yes 2 0.00061823 115.7 By MS/MS 6.5 0.5 1 1 2 14576000 0 0 14576000 15059 2306 15801 65999;66000 55629 55629 1 0 0 2237800 VSAWELINSEYFSEGR NLLLSVKYGRFQGQRVSAWELINSEYFSEG SAWELINSEYFSEGRRRQLLRRYRQREVTL R V S G R R 1 1 1 0 0 0 3 1 0 1 1 0 0 1 0 3 0 1 1 1 0 0 16 0 1885.8846 P58107 P58107 831 846 EPPK1 Epiplakin yes yes 2 1.5647E-06 162.49 By MS/MS By MS/MS 1 0 2 1 1 5856700 0 822250 5034400 15060 958 15802 66001;66002 55630;55631 55631 2 0 401900 1084800 VSCLETVWVSR DSGLHKEERYDLKTKVSCLETVWVSRANVI LKTKVSCLETVWVSRANVIQRRGRAGRCQS K V S S R A 0 1 0 0 1 0 1 0 0 0 1 0 0 0 0 2 1 1 0 3 0 0 11 0 1334.6653 Q7L2E3 Q7L2E3 763 773 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 2 2.4007E-05 105.98 By MS/MS 2 0 1 1 0 0 0 0 15061 1522 15803 66003 55632 55632 1 0 0 0 VSDVIWNSLSR YPREGGVSSRELVKKVSDVIWNSLSRSYFK LVKKVSDVIWNSLSRSYFKDRAHIQSLFSF K V S S R S 0 1 1 1 0 0 0 0 0 1 1 0 0 0 0 3 0 1 0 2 0 0 11 0 1274.6619 O00255 O00255 121 131 MEN1 Menin yes yes 2 1.7506E-09 166.19 By matching By MS/MS By MS/MS 3 0 3 1 1 1 12272000 1071400 3472500 7728500 15062 113 15804 66004;66005;66006 55633;55634 55634 2 1236200 1480300 1499000 VSEADSSNADWVTK YGLVTYATYPKIWVKVSEADSSNADWVTKQ KVSEADSSNADWVTKQLNEINYEDHKLKSG K V S T K Q 2 0 1 2 0 0 1 0 0 0 0 1 0 0 0 3 1 1 0 2 0 0 14 0 1507.6791 P00751 P00751 324 337 CFB Complement factor B;Complement factor B Ba fragment;Complement factor B Bb fragment yes yes 2 0.00048242 136.53 By MS/MS 9 0 1 1 2355800 2355800 0 0 15063 365 15805 66007 55635 55635 1 1322300 0 0 VSEEAESQQQWDTSK EERKRRPPSPEPSTKVSEEAESQQQWDTSK VSEEAESQQQWDTSKGEQVSQNGLPAEQGS K V S S K G 1 0 0 1 0 3 3 0 0 0 0 1 0 0 0 3 1 1 0 1 0 0 15 0 1750.7646 Q01082 Q01082 2109 2123 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 4.2768E-73 242.97 By MS/MS By MS/MS 1 0 2 1 1 14140000 0 5634600 8505600 15064 1128 15806 66008;66009 55636;55637 55637 2 0 2754100 1832700 VSEEIEDIIK QEKLKAIEPNDYTGKVSEEIEDIIKKGETQ DYTGKVSEEIEDIIKKGETQTL________ K V S I K K 0 0 0 1 0 0 3 0 0 3 0 1 0 0 0 1 0 0 0 1 0 0 10 0 1173.6129 O75223 O75223 172 181 GGCT Gamma-glutamylcyclotransferase yes yes 2 0.0060728 95.608 By MS/MS 4 0.816 1 1 1 3 25536000 25536000 0 0 15065 248 15807 66010;66011;66012 55638;55639 55638 2 21935000 0 0 VSELKEELK ______________________________ NVKKLKVSELKEELKKRRLSDKGLKAELME K V S L K K 0 0 0 0 0 0 3 0 0 0 2 2 0 0 0 1 0 0 0 1 0 0 9 1 1073.5968 Q00839 Q00839 13 21 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 9.8746E-16 179.36 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 63584000 0 27851000 35732000 15066 1127 15808 66013;66014;66015 55640;55641;55642 55640 3 0 12542000 7957100 VSELKEELKK ______________________________ VKKLKVSELKEELKKRRLSDKGLKAELMER K V S K K R 0 0 0 0 0 0 3 0 0 0 2 3 0 0 0 1 0 0 0 1 0 0 10 2 1201.6918 Q00839 Q00839 13 22 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2;3 0.0023723 132.88 By MS/MS By MS/MS 2.36 1.23 3 4 2 1 1 4 7 119880000 0 52574000 67307000 15067 1127 15809 66016;66017;66018;66019;66020;66021;66022;66023;66024;66025;66026 55643;55644;55645;55646;55647 55643 5 0 23782000 14824000 VSEPLLWELFLQAGPVVNTHMPK RNQDATVYVGGLDEKVSEPLLWELFLQAGP LFLQAGPVVNTHMPKDRVTGQHQGYGFVEF K V S P K D 1 0 1 0 0 1 2 1 1 0 4 1 1 1 3 1 1 1 0 3 0 0 23 0 2604.3774 Q15427 Q15427 24 46 SF3B4 Splicing factor 3B subunit 4 yes yes 3 0.0064574 42.454 By MS/MS 4 0 1 1 29352000 0 0 29352000 15068 1365 15810 66027 55648 55648 1 0 0 4794100 VSEPVLSLPVR SALCFGCKFQFKPIRVSEPVLSLPVRRGSV KPIRVSEPVLSLPVRRGSVTVLSGYAADEI R V S V R R 0 1 0 0 0 0 1 0 0 0 2 0 0 0 2 2 0 0 0 3 0 0 11 0 1194.6972 Q6P6C2 Q6P6C2 239 249 ALKBH5 RNA demethylase ALKBH5 yes yes 2 0.0045089 102.55 By MS/MS By MS/MS 5 0 2 1 1 14084000 0 4705200 9378700 15069 1493 15811 66028;66029 55649;55650 55649 2 0 1212800 1308200 VSFELFADK TVFFDIAVDGEPLGRVSFELFADKVPKTAE GEPLGRVSFELFADKVPKTAENFRALSTGE R V S D K V 1 0 0 1 0 0 1 0 0 0 1 1 0 2 0 1 0 0 0 1 0 0 9 0 1054.5335 P62937 P62937 20 28 PPIA Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed yes yes 2 0.00299 101.64 By MS/MS By MS/MS By MS/MS 7.83 0.687 2 3 1 1 2 3 180480000 12532000 9807400 158140000 15070 1053 15812 66030;66031;66032;66033;66034;66035 55651;55652;55653;55654 55652 4 10759000 4554000 25110000 VSFLLPTLR SLEGNPFLTVNDNLKVSFLLPTLRKVNGKD VNDNLKVSFLLPTLRKVNGKDASSTYSQVE K V S L R K 0 1 0 0 0 0 0 0 0 0 3 0 0 1 1 1 1 0 0 1 0 0 9 0 1044.6332 Q9UFC0 Q9UFC0 112 120 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 yes yes 2 0.00095573 110.22 By MS/MS By MS/MS 2.6 1.02 1 1 2 1 2 3 16597000 0 6943500 9653600 15071 2139 15813 66036;66037;66038;66039;66040 55655;55656;55657;55658 55656 4 0 2568100 2027100 VSFLSALEEYTK EDLRQGLLPVLESFKVSFLSALEEYTKKLN SFKVSFLSALEEYTKKLNTQ__________ K V S T K K 1 0 0 0 0 0 2 0 0 0 2 1 0 1 0 2 1 0 1 1 0 0 12 0 1385.7078 P02647 P02647 251 262 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 7.5812E-12 174.98 By MS/MS 6.2 2.79 1 1 1 1 1 5 121580000 121580000 0 0 15072 389 15814 66041;66042;66043;66044;66045 55659;55660;55661;55662 55660 4 76278000 0 0 VSFLSALEEYTKK EDLRQGLLPVLESFKVSFLSALEEYTKKLN FKVSFLSALEEYTKKLNTQ___________ K V S K K L 1 0 0 0 0 0 2 0 0 0 2 2 0 1 0 2 1 0 1 1 0 0 13 1 1513.8028 P02647 P02647 251 263 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2;3 0.00051314 135.8 By MS/MS 9 0 2 2 14875000 14875000 0 0 15073 389 15815 66046;66047 55663;55664 55664 2 8349500 0 0 VSGISFPTTELLR SSLWRSSGAPETLQRVSGISFPTTELLRVW QRVSGISFPTTELLRVWEAWREEAELRDHR R V S L R V 0 1 0 0 0 0 1 1 0 1 2 0 0 1 1 2 2 0 0 1 0 0 13 0 1418.7769 Q9BW92 Q9BW92 276 288 TARS2 Threonine--tRNA ligase, mitochondrial yes yes 2 0.034083 73.781 By MS/MS 3 0 1 1 1532300 0 1532300 0 15074 1922 15816 66048 55665 55665 1 0 653220 0 VSGLEPATVDWAFDLTK KYDRNGLNVSIECKRVSGLEPATVDWAFDL GLEPATVDWAFDLTKTNMQTMYEQSEWGWK R V S T K T 2 0 0 2 0 0 1 1 0 0 2 1 0 1 1 1 2 1 0 2 0 0 17 0 1847.9305 Q86UY6 Q86UY6 62 78 NAA40 N-alpha-acetyltransferase 40 yes yes 2 4.4106E-05 103.97 By matching By MS/MS 6.33 0.471 2 1 1 2 12441000 0 520200 11920000 15075 1550 15817 66049;66050;66051 55666;55667 55666 2 0 180080 1968800 VSGPGVEPHGVLR TRVHVQPAVDTSGVKVSGPGVEPHGVLREV VKVSGPGVEPHGVLREVTTEFTVDARSLTA K V S L R E 0 1 0 0 0 0 1 3 1 0 1 0 0 0 2 1 0 0 0 3 0 0 13 0 1302.7044 Q14315 Q14315 1255 1267 FLNC Filamin-C yes yes 3 0.057732 41.092 By MS/MS 1.5 0.5 1 1 2 32842000 0 32842000 0 15076 1298 15818 66052;66053 55668 55668 1 0 15997000 0 VSGPLSGNSANHHADNPR SPIVAGGLRNIHDNKVSGPLSGNSANHHAD PLSGNSANHHADNPRHGSSEDYLHMVHRLS K V S P R H 2 1 3 1 0 0 0 2 2 0 1 0 0 0 2 3 0 0 0 1 0 0 18 0 1828.8565 Q6KC79 Q6KC79 223 240 NIPBL Nipped-B-like protein yes yes 4 0.063278 26.474 By MS/MS 1.5 0.5 1 1 2 2114100 0 0 2114100 15077 1480 15819 66054;66055 55669 55669 1 0 0 457820 VSGQGLHEGHTFEPAEFIIDTR VVISQSEIGDASRVRVSGQGLHEGHTFEPA EGHTFEPAEFIIDTRDAGYGGLSLSIEGPS R V S T R D 1 1 0 1 0 1 3 3 2 2 1 0 0 2 1 1 2 0 0 1 0 0 22 0 2439.1819 P21333 P21333 2052 2073 FLNA Filamin-A yes yes 3 1.7994E-12 110.26 By MS/MS 1 0 1 1 9255900 0 0 9255900 15078 623 15820 66056 55670 55670 1 0 0 1994300 VSGSINMLSLTQGLFR ITICRLIGIKDMYAKVSGSINMLSLTQGLF SGSINMLSLTQGLFRGLSRQETHQQLADKK K V S F R G 0 1 1 0 0 1 0 2 0 1 3 0 1 1 0 3 1 0 0 1 0 0 16 0 1721.9134 P82675 P82675 336 351 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 4.4957E-05 116.01 By MS/MS 5.5 0.5 1 1 2 7638900 0 7638900 0 15079 1099 15821 66057;66058 55671 55671 1 0 2113900 0 VSGTLDTPEK QTSTKGQVLRKKKKKVSGTLDTPEKTVDSQ KKKKKVSGTLDTPEKTVDSQGPTPVCTPTF K V S E K T 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 1 2 0 0 1 0 0 10 0 1045.5292 Q9BYG3 Q9BYG3 217 226 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein yes yes 2 0.0093495 89.047 By matching By MS/MS 5.5 0.5 1 1 1 1 8480800 3528200 4952600 0 15080 1936 15822 66059;66060 55672 55672 1 2826500 1714400 0 VSHIDVITAEMAK LESADKFYGVKFRNKVSHIDVITAEMAKDF NKVSHIDVITAEMAKDFVEDDTTHG_____ K V S A K D 2 0 0 1 0 0 1 0 1 2 0 1 1 0 0 1 1 0 0 2 0 0 13 0 1412.7334 Q9UQE7 Q9UQE7 1195 1207 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2;3 1.9797E-07 169.52 By MS/MS By MS/MS 2.71 3.01 3 3 1 2 5 147960000 0 11172000 136790000 15081 2222 15823 66061;66062;66063;66064;66065;66066;66067 55673;55674;55675;55676;55677;55678 55677 6 0 5186100 35292000 VSHLLGINVTDFTR NTDQASMPDNTAAQKVSHLLGINVTDFTRG KVSHLLGINVTDFTRGILTPRIKVGRDYVQ K V S T R G 0 1 1 1 0 0 0 1 1 1 2 0 0 1 0 1 2 0 0 2 0 0 14 0 1570.8467 P35579 P35579 374 387 MYH9 Myosin-9 yes yes 2;3 3.7154E-11 174.84 By matching By MS/MS By MS/MS 2.33 1.37 5 2 2 2 1 1 5 6 461390000 1593400 362250000 97549000 15082 752 15824 66068;66069;66070;66071;66072;66073;66074;66075;66076;66077;66078;66079 55679;55680;55681;55682;55683;55684;55685;55686;55687;55688 55687 10 1593400 173250000 20476000 VSIDPESNIISIWNNGK AADNKQRDKNMTCIKVSIDPESNIISIWNN IDPESNIISIWNNGKGIPVVEHKVEKVYVP K V S G K G 0 0 3 1 0 0 1 1 0 4 0 1 0 0 1 3 0 1 0 1 0 0 17 0 1884.9581 Q02880 Q02880 128 144 TOP2B DNA topoisomerase 2-beta yes yes 2 8.4674E-06 133.71 By MS/MS By MS/MS 1 0 2 1 1 14064000 0 1889800 12174000 15083 1150 15825 66080;66081 55689;55690 55690 2 0 923690 2623000 VSILAAIDEASK EDLRQGLLPVLESLKVSILAAIDEASKKLN SLKVSILAAIDEASKKLNAQ__________ K V S S K K 3 0 0 1 0 0 1 0 0 2 1 1 0 0 0 2 0 0 0 1 0 0 12 0 1215.6711 CON__P15497 CON__P15497 249 260 yes yes 2 0.00017587 133.81 By MS/MS By MS/MS By MS/MS 7.14 2.42 2 1 1 3 2 2 3 5 2 7 391030000 69341000 23381000 298310000 + 15084 59 15826 66082;66083;66084;66085;66086;66087;66088;66089;66090;66091;66092;66093;66094;66095 55691;55692;55693;55694;55695;55696;55697;55698;55699;55700 55698 10 129320000 38243000 94223000 VSILAAIDEASKK EDLRQGLLPVLESLKVSILAAIDEASKKLN LKVSILAAIDEASKKLNAQ___________ K V S K K L 3 0 0 1 0 0 1 0 0 2 1 2 0 0 0 2 0 0 0 1 0 0 13 1 1343.766 CON__P15497 CON__P15497 249 261 yes yes 2;3 0.00059429 128.01 By MS/MS By MS/MS By MS/MS 7.81 1.82 1 1 3 6 1 3 6 10 4 7 469220000 95705000 19094000 354420000 + 15085 59 15827 66096;66097;66098;66099;66100;66101;66102;66103;66104;66105;66106;66107;66108;66109;66110;66111;66112;66113;66114;66115;66116 55701;55702;55703;55704;55705;55706;55707;55708;55709;55710;55711;55712;55713;55714;55715;55716;55717;55718 55716 18 180780000 39981000 103840000 VSILESLDKWER STLRKRKMYEEFLSKVSILESLDKWERLTV LSKVSILESLDKWERLTVADALEPVQFEDG K V S E R L 0 1 0 1 0 0 2 0 0 1 2 1 0 0 0 2 0 1 0 1 0 0 12 1 1473.7827 P10644 P10644 253 264 PRKAR1A cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed yes yes 3 0.00023343 117.98 By MS/MS 5.5 0.5 1 1 2 1617100 0 0 1617100 15086 514 15828 66117;66118 55719 55719 1 0 0 231570 VSISEGDDKIEYR TKNLVPGESVYGEKRVSISEGDDKIEYRAW KRVSISEGDDKIEYRAWNPFRSKLAAAILG R V S Y R A 0 1 0 2 0 0 2 1 0 2 0 1 0 0 0 2 0 0 1 1 0 0 13 1 1509.7311 P22087 P22087 123 135 FBL rRNA 2-O-methyltransferase fibrillarin yes yes 2;3 5.6142E-24 202.56 By MS/MS By MS/MS 4.45 1.78 1 1 1 2 2 3 1 1 10 378740000 0 24531000 354200000 15087 627 15829 66119;66120;66121;66122;66123;66124;66125;66126;66127;66128;66129 55720;55721;55722;55723;55724;55725;55726;55727 55725 7 0 8491800 51875000 VSIVNQYGK MVGVGPKGEESMAARVSIVNQYGKCVYDKY ESMAARVSIVNQYGKCVYDKYVKPTEPVTD R V S G K C 0 0 1 0 0 1 0 1 0 1 0 1 0 0 0 1 0 0 1 2 0 0 9 0 1006.5447 Q9GZR2 Q9GZR2 265 273 REXO4 RNA exonuclease 4 yes yes 2 0.021571 90.37 By MS/MS By MS/MS 4 0 2 1 1 16607000 0 7571600 9035300 15088 1951 15830 66130;66131 55728;55729 55729 1 0 2512700 1475800 VSIYEAMR SGCLAGIYLEDTKEKVSIYEAMRRGLLRAT LEDTKEKVSIYEAMRRGLLRATTAALLLEA K V S M R R 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 1 1 0 0 8 0 967.4797 Q15149 Q15149 3506 3513 PLEC Plectin yes yes 2 0.00053418 128.57 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 36142000 0 14521000 21621000 15089 1348 15831 66132;66133;66134;66135 55730;55731 55730 2 0 7097600 4651800 VSLAGACGVGGYGSR SVSRSGGGGGGGFGRVSLAGACGVGGYGSR VSLAGACGVGGYGSRSLYNLGGSKRISIST R V S S R S 2 1 0 0 1 0 0 5 0 0 1 0 0 0 0 2 0 0 1 2 0 0 15 0 1409.6721 CON__P13647;P13647 CON__P13647 49 63 KRT5 Keratin, type II cytoskeletal 5 yes no 2 0.00010012 153.74 By MS/MS By MS/MS 6.22 3.33 2 1 1 1 1 1 2 6 3 115930000 97205000 0 18724000 + 15090 58 15832 66136;66137;66138;66139;66140;66141;66142;66143;66144 55732;55733;55734;55735;55736;55737;55738;55739;55740 55736 9 99072000 0 10669000 VSLDVNHFAPDELTVK SSGVSEIRHTADRWRVSLDVNHFAPDELTV SLDVNHFAPDELTVKTKDGVVEITGKHEER R V S V K T 1 0 1 2 0 0 1 0 1 0 2 1 0 1 1 1 1 0 0 3 0 0 16 0 1782.9152 P04792 P04792 97 112 HSPB1 Heat shock protein beta-1 yes yes 2;3 1.5642E-26 203.74 By MS/MS By MS/MS By MS/MS 7.1 0.943 3 4 2 1 3 2 5 486100000 17053000 42309000 426740000 15091 417 15833 66145;66146;66147;66148;66149;66150;66151;66152;66153;66154 55741;55742;55743;55744;55745;55746;55747 55747 7 12157000 24294000 73465000 VSLEDLYNGK RNGRRRGEDMMHPLKVSLEDLYNGKTTKLQ MHPLKVSLEDLYNGKTTKLQLSKNVLCSAC K V S G K T 0 0 1 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 10 0 1136.5714 O60884 O60884 122 131 DNAJA2 DnaJ homolog subfamily A member 2 yes yes 2 0.00092417 111.82 By MS/MS 5 0 1 1 8616000 0 8616000 0 15092 238 15834 66155 55748 55748 1 0 2220900 0 VSLEETAQLPSAPQGSR QEKGEAEALSRTLDKVSLEETAQLPSAPQG LEETAQLPSAPQGSRAAPTAASDQPDSAAT K V S S R A 2 1 0 0 0 2 2 1 0 0 2 0 0 0 2 3 1 0 0 1 0 0 17 0 1768.8955 Q9BRP8 Q9BRP8 116 132 WIBG Partner of Y14 and mago yes yes 2 0.0061446 73.927 By matching By MS/MS 5.5 0.5 1 1 1 1 11428000 0 3201000 8227500 15093 1891 15835 66156;66157 55749 55749 1 0 825120 1230900 VSLEPHQGPGTPESK IAEGTGITTRQQRKRVSLEPHQGPGTPESK VSLEPHQGPGTPESKKATSCFPRPMTPRDR R V S S K K 0 0 0 0 0 1 2 2 1 0 1 1 0 0 3 2 1 0 0 1 0 0 15 0 1561.7736 Q14980 Q14980 1990 2004 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2;3 3.0917E-12 183.94 By MS/MS By MS/MS 3.86 2.53 3 1 2 1 1 6 117180000 0 12539000 104640000 15094 1327 15836 66158;66159;66160;66161;66162;66163;66164 55750;55751;55752;55753;55754;55755 55752 6 0 6129100 19146000 VSLFSHLPQYSR PERQQVPTRKDYGSKVSLFSHLPQYSRQNS GSKVSLFSHLPQYSRQNSLTQFMSIPSSVI K V S S R Q 0 1 0 0 0 1 0 0 1 0 2 0 0 1 1 3 0 0 1 1 0 0 12 0 1432.7463 Q9UI10 Q9UI10 177 188 EIF2B4 Translation initiation factor eIF-2B subunit delta yes yes 3 0.039253 50.563 By MS/MS 4 0 1 1 3608800 0 3608800 0 15095 2160 15837 66165 55756 55756 1 0 1197600 0 VSLLETLLQTQK ESALCQMQLETEKERVSLLETLLQTQKELA KERVSLLETLLQTQKELADASQQLERLRQD R V S Q K E 0 0 0 0 0 2 1 0 0 0 4 1 0 0 0 1 2 0 0 1 0 0 12 0 1371.7973 Q9BV73 Q9BV73 928 939 CEP250 Centrosome-associated protein CEP250 yes yes 2 0.00040353 127.76 By MS/MS 1 0 1 1 1992600 0 1992600 0 15096 1911 15838 66166 55757 55757 1 0 973970 0 VSLLGPVTTPEHQLLK ENSNAFSTPQTPDIKVSLLGPVTTPEHQLL SLLGPVTTPEHQLLKTPSSSSLSQRVRSTL K V S L K T 0 0 0 0 0 1 1 1 1 0 4 1 0 0 2 1 2 0 0 2 0 0 16 0 1730.9931 Q9H0H5 Q9H0H5 572 587 RACGAP1 Rac GTPase-activating protein 1 yes yes 3 0.005052 61.622 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 21640000 0 13129000 8510900 15097 1963 15839 66167;66168;66169 55758;55759 55758 2 0 5635500 1650700 VSLLNEQFLPLIR EYISYSSQEEMDSNKVSLLNEQFLPLIRLL NKVSLLNEQFLPLIRLLESKYPRTLDVVLE K V S I R L 0 1 1 0 0 1 1 0 0 1 4 0 0 1 1 1 0 0 0 1 0 0 13 0 1540.8977 Q9H583 Q9H583 418 430 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 4.6414E-17 188.28 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 59194000 0 13370000 45823000 15098 1984 15840 66170;66171;66172;66173;66174 55760;55761;55762;55763 55762 4 0 6452300 9872400 VSLQVHPDR RREASDGEVRRGYHKVSLQVHPDRVGEGDK RRGYHKVSLQVHPDRVGEGDKEDATRRFQI K V S D R V 0 1 0 1 0 1 0 0 1 0 1 0 0 0 1 1 0 0 0 2 0 0 9 0 1049.5618 Q8WXX5 Q8WXX5 38 46 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.0015547 107.69 By matching By MS/MS 6 0 2 1 1 20165000 0 3504900 16660000 15099 1698 15841 66175;66176 55764 55764 1 0 1213300 2492600 VSMSPVLHTQNK TIIVAVKVSPVSYLRVSMSPVLHTQNKEAL YLRVSMSPVLHTQNKEALVAVPLGMTVTFT R V S N K E 0 0 1 0 0 1 0 0 1 0 1 1 1 0 1 2 1 0 0 2 0 0 12 0 1339.6918 Q8TEM1 Q8TEM1 1379 1390 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 0.00075065 105.2 By MS/MS 1 0 1 1 14945000 0 0 14945000 15100 1666 15842 66177 55765 55765 1 0 0 3220200 VSMSSQNDGFFAVHLK SGQIKSEVPLVDVTKVSMSSQNDGFFAVHL SMSSQNDGFFAVHLKEGSEAASKGDFLFSS K V S L K E 1 0 1 1 0 1 0 1 1 0 1 1 1 2 0 3 0 0 0 2 0 0 16 0 1765.8458 O43795 O43795 1037 1052 MYO1B Unconventional myosin-Ib yes yes 3 0.067272 29.618 By MS/MS 2 0 1 1 2245900 0 2245900 0 15101 212 15843 66178 55766 55766 1 0 1011300 0 VSNFKPGVYAVSVTGR AMMSPEDSWVSKWQRVSNFKPGVYAVSVTG SNFKPGVYAVSVTGRLPQGIVRELKSRGVA R V S G R L 1 1 1 0 0 0 0 2 0 0 0 1 0 1 1 2 1 0 1 4 0 0 16 1 1679.8995 P63272 P63272 77 92 SUPT4H1 Transcription elongation factor SPT4 yes yes 3 9.4256E-06 118.4 By MS/MS 9 0 1 1 16553000 0 0 16553000 15102 1070 15844 66179 55767 55767 1 0 0 5287900 VSNLQYLHSYLTYIK DQKQRDYILEGEPGKVSNLQYLHSYLTYIK VSNLQYLHSYLTYIKLSTAIKRNENMAKGL K V S I K L 0 0 1 0 0 1 0 0 1 1 3 1 0 0 0 2 1 0 3 1 0 0 15 0 1840.9723 Q9UHB9 Q9UHB9 373 387 SRP68 Signal recognition particle subunit SRP68 yes yes 3 0.00037646 90.725 By MS/MS 3 0 1 1 11692000 0 11692000 0 15103 2152 15845 66180 55768 55768 1 0 4984500 0 VSPEEAIK RVDKEKGYIDLSKRRVSPEEAIKCEDKFTK IDLSKRRVSPEEAIKCEDKFTKSKTVYSIL R V S I K C 1 0 0 0 0 0 2 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 8 0 871.4651 P05198 P05198 90 97 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 0.050687 72.789 By MS/MS 6 0 1 1 8931800 0 8931800 0 15104 428 15846 66181 55769 55769 1 0 3091900 0 VSPEEVTIYNHPGIQAELR PLSASIELILVEDVRVSPEEVTIYNHPGIQ EVTIYNHPGIQAELRIREGSGYFFLNTSTA R V S L R I 1 1 1 0 0 1 3 1 1 2 1 0 0 0 2 1 1 0 1 2 0 0 19 0 2151.096 Q8TEM1 Q8TEM1 897 915 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 3 6.1524E-05 92.474 By MS/MS 1 0 1 1 10320000 0 0 10320000 15105 1666 15847 66182 55770 55770 1 0 0 2223600 VSPSFSAELK RAKLDQQTLRNLLSKVSPSFSAELKQLNQQ NLLSKVSPSFSAELKQLNQQYEKLFHKWML K V S L K Q 1 0 0 0 0 0 1 0 0 0 1 1 0 1 1 3 0 0 0 1 0 0 10 0 1063.555 Q13416 Q13416 279 288 ORC2 Origin recognition complex subunit 2 yes yes 2 0.044781 74.173 By MS/MS 3 0 1 1 13107000 0 0 13107000 15106 1244 15848 66183 55771 55771 1 0 0 2542200 VSPVSYLR QEPFGANQTIIVAVKVSPVSYLRVSMSPVL TIIVAVKVSPVSYLRVSMSPVLHTQNKEAL K V S L R V 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 2 0 0 1 2 0 0 8 0 919.51272 Q8TEM1 Q8TEM1 1371 1378 NUP210 Nuclear pore membrane glycoprotein 210 yes yes 2 0.0036394 104.37 By MS/MS 1 0 1 1 11309000 0 0 11309000 15107 1666 15849 66184 55772 55772 1 0 0 2436700 VSQGSKDPAEGDGAQPEETPR NARGLLEFEHQRAPRVSQGSKDPAEGDGAQ DPAEGDGAQPEETPRDGDKPEETQGKAEKD R V S P R D 2 1 0 2 0 2 3 3 0 0 0 1 0 0 3 2 1 0 0 1 0 0 21 1 2153.9825 Q14697 Q14697 186 206 GANAB Neutral alpha-glucosidase AB yes yes 3 3.7811E-11 110.67 By MS/MS 2 0 1 1 4987000 0 4987000 0 15108 1317 15850 66185 55773 55773 1 0 2245700 0 VSQPIEGHAASFAQFK NRVVGAMQLYSVDRKVSQPIEGHAASFAQF SQPIEGHAASFAQFKMEGNAEESTLFCFAV K V S F K M 3 0 0 0 0 2 1 1 1 1 0 1 0 2 1 2 0 0 0 1 0 0 16 0 1715.8631 Q00610 Q00610 190 205 CLTC Clathrin heavy chain 1 yes yes 2;3 4.6042E-05 115.35 By matching By MS/MS 2 1.41 3 2 1 1 5 169170000 2708400 0 166460000 15109 1125 15851 66186;66187;66188;66189;66190;66191 55774;55775;55776 55775 2 2708400 0 36039000 VSQVIMEK HTEMITTLKKIRRFKVSQVIMEKSTMLYNK KKIRRFKVSQVIMEKSTMLYNKFKNMFLVG K V S E K S 0 0 0 0 0 1 1 0 0 1 0 1 1 0 0 1 0 0 0 2 0 0 8 0 932.5001 O75475 O75475 408 415 PSIP1 PC4 and SFRS1-interacting protein yes yes 2 0.0038232 103.74 By MS/MS 2.5 0.5 1 1 2 21683000 0 0 21683000 15110 262 15852 66192;66193 55777 55777 1 0 0 4224500 VSQWWER YKLTQRQVNITVQKKVSQWWERLTKQEKRP VNITVQKKVSQWWERLTKQEKRPLFLAPDF K V S E R L 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 7 0 989.47191 Q9P035 Q9P035 86 92 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 yes yes 2 0.013287 114.72 By MS/MS 1.5 0.5 1 1 2 7661300 0 0 7661300 15111 2112 15853 66194;66195 55778 55778 1 0 0 1659900 VSRDTLYEAVR ______________________________ MSSKVSRDTLYEAVREVLHGNQRKRRKFLE K V S V R E 1 2 0 1 0 0 1 0 0 0 1 0 0 0 0 1 1 0 1 2 0 0 11 1 1307.6834 P62906 P62906 5 15 RPL10A 60S ribosomal protein L10a yes yes 3 0.031932 59.116 By MS/MS By matching 7 0 2 1 1 14244000 0 8414800 5829400 15112 1049 15854 66196;66197 55779 55779 1 0 4831800 1034400 VSSAEGAAKEEPK ______________________________ RKVSSAEGAAKEEPKRRSARLSAKPPAKVE K V S P K R 3 0 0 0 0 0 3 1 0 0 0 2 0 0 1 2 0 0 0 1 0 0 13 1 1301.6463 P05114 P05114 6 18 HMGN1 Non-histone chromosomal protein HMG-14 yes yes 3 0.024407 58.831 By MS/MS 7.5 1.12 1 1 1 1 4 7887400 0 7887400 0 15113 425 15855 66198;66199;66200;66201 55780 55780 1 0 3783900 0 VSSFFNTLK VEDHLSFLEKDLRDKVSSFFNTLKEKESQA KDLRDKVSSFFNTLKEKESQAPALPAQEEM K V S L K E 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 2 1 0 0 1 0 0 9 0 1041.5495 CON__Q32PJ2 CON__Q32PJ2 351 359 yes yes 2 0.0027952 102.46 By MS/MS 5 0 1 1 6251400 6251400 0 0 + 15114 81 15856 66202 55781 55781 1 5008200 0 0 VSSLMWEVR LSTIKQRLENRFYRRVSSLMWEVRYIEHNT NRFYRRVSSLMWEVRYIEHNTRTFNEPGSP R V S V R Y 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 2 0 1 0 2 0 0 9 0 1105.559 Q8WWQ0 Q8WWQ0 1221 1229 PHIP PH-interacting protein yes yes 2 0.00072693 131.06 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 18586000 0 4335000 14251000 15115 1690 15857 66203;66204;66205;66206 55782;55783 55783 2 0 2118900 3031800 VSSPLPSPSAMTDAANSQAAAK YMNLASHIQPGTVNRVSSPLPSPSAMTDAA PSAMTDAANSQAAAKLALRKQLEKTLLEIP R V S A K L 6 0 1 1 0 1 0 0 0 0 1 1 1 0 3 5 1 0 0 1 0 0 22 0 2100.0157 Q8WXI9 Q8WXI9 332 353 GATAD2B Transcriptional repressor p66-beta yes yes 2 2.0705E-06 84.874 By MS/MS 6 0 1 1 4510900 0 0 4510900 15116 1697 15858 66207 55784 55784 1 0 0 674890 VSSQNLVAIPVYVK SFIPPDGNFRLISYRVSSQNLVAIPVYVKH RVSSQNLVAIPVYVKHSISFKENSSCGRFD R V S V K H 1 0 1 0 0 1 0 0 0 1 1 1 0 0 1 2 0 0 1 4 0 0 14 0 1515.8661 Q9Y2T2 Q9Y2T2 264 277 AP3M1 AP-3 complex subunit mu-1 yes yes 2 0.024265 72.321 By MS/MS By MS/MS 5.75 0.829 2 1 1 1 3 48790000 0 9569500 39221000 15117 2250 15859 66208;66209;66210;66211 55785;55786 55786 2 0 2466700 5621300 VSTDLLR ETTDIISRHLPGVCKVSTDLLREGAPIEPD RHLPGVCKVSTDLLREGAPIEPDPPVSHWK K V S L R E 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 1 0 0 7 0 802.45487 Q96HS1 Q96HS1 170 176 PGAM5 Serine/threonine-protein phosphatase PGAM5, mitochondrial yes yes 2 0.020755 101.21 By MS/MS By matching 6.33 0.471 2 1 1 2 29829000 0 9346900 20483000 15118 1796 15860 66212;66213;66214 55787 55787 1 0 3235600 3151200 VSTLGLYMEANR VRCYVHIMKEGLCSRVSTLGLYMEANRQVP CSRVSTLGLYMEANRQVPKLLSALCPEEPP R V S N R Q 1 1 1 0 0 0 1 1 0 0 2 0 1 0 0 1 1 0 1 1 0 0 12 0 1352.6758 Q9NR50 Q9NR50 313 324 EIF2B3 Translation initiation factor eIF-2B subunit gamma yes yes 2 0.061928 69.979 By MS/MS 4 0 1 1 1791200 0 1791200 0 15119 2040 15861 66215 55788 55788 1 0 594430 0 VSTLPAITLK AVPLIQGEYMIPCEKVSTLPAITLKLGGKG IPCEKVSTLPAITLKLGGKGYKLSPEDYTL K V S L K L 1 0 0 0 0 0 0 0 0 1 2 1 0 0 1 1 2 0 0 1 0 0 10 0 1041.6434 P07339 P07339 332 341 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2 0.0064959 94.692 By MS/MS By matching 6.5 3.69 1 1 1 1 2 5 1 53908000 51965000 0 1942600 15120 458 15862 66216;66217;66218;66219;66220;66221 55789;55790;55791;55792 55789 4 71589000 0 4248700 VSTPSDYTLSFLK LQLTAQSQVQMKKQKVSTPSDYTLSFLKRQ QKVSTPSDYTLSFLKRQRKGL_________ K V S L K R 0 0 0 1 0 0 0 0 0 0 2 1 0 1 1 3 2 0 1 1 0 0 13 0 1456.745 O00255 O00255 597 609 MEN1 Menin yes yes 2 0.042905 70.942 By MS/MS 3 0 1 1 13741000 0 0 13741000 15121 113 15863 66222 55793 55793 1 0 0 2665000 VSTTLNVAQAYYAR ERAFSFRTVEAKQEKVSTTLNVAQAYYARD KVSTTLNVAQAYYARDALAKNLYSRLFSWL K V S A R D 3 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 2 0 2 2 0 0 14 0 1555.7995 O43795 O43795 336 349 MYO1B Unconventional myosin-Ib yes yes 2 0.00078201 113.63 By MS/MS 2 0 1 1 4886400 0 4886400 0 15122 212 15864 66223 55794 55794 1 0 2200400 0 VSVADHSLHLSK HFYAGGQVYPGEASRVSVADHSLHLSKAKI ASRVSVADHSLHLSKAKISKPAPYWEGTAV R V S S K A 1 0 0 1 0 0 0 0 2 0 2 1 0 0 0 3 0 0 0 2 0 0 12 0 1291.6884 Q13162 Q13162 67 78 PRDX4 Peroxiredoxin-4 yes yes 3 0.036592 51.875 By matching By MS/MS 7 0 2 1 1 34760000 8094200 0 26666000 15123 1227 15865 66224;66225 55795 55795 1 17445000 0 4731800 VSVELTNSLFK LFRISEDKNPDYRKRVSVELTNSLFKHDPA YRKRVSVELTNSLFKHDPAAWEAAQSMIPI R V S F K H 0 0 1 0 0 0 1 0 0 0 2 1 0 1 0 2 1 0 0 2 0 0 11 0 1235.6762 P14923 P14923 664 674 JUP Junction plakoglobin yes yes 2 6.4781E-06 152.28 By MS/MS By MS/MS 5.3 2.41 1 2 1 1 1 2 1 1 7 3 98177000 80478000 0 17699000 15124 567 15866 66226;66227;66228;66229;66230;66231;66232;66233;66234;66235 55796;55797;55798;55799;55800;55801 55796 6 77455000 0 3355000 VSVEYTEK SDPIVFVVGAFAHGKVSVEYTEKMVSISNY GAFAHGKVSVEYTEKMVSISNYPLSAALTC K V S E K M 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 1 1 0 1 2 0 0 8 0 953.47058 Q92979 Q92979 208 215 EMG1 Ribosomal RNA small subunit methyltransferase NEP1 yes yes 2 0.00084705 124.08 By matching By MS/MS 7 0 2 1 1 41044000 0 1889000 39155000 15125 1736 15867 66236;66237 55802 55802 1 0 1084700 6947900 VSVFVPPR EKNVPLPVIAELPPKVSVFVPPRDGFFGNP IAELPPKVSVFVPPRDGFFGNPRKSKLICQ K V S P R D 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 3 0 0 8 0 899.52289 P01871;P0DOX6 P01871 113 120 IGHM Ig mu chain C region yes no 2 0.0016342 113.1 By MS/MS 9.5 0.5 1 1 2 15241000 15241000 0 0 15126 385 15868 66238;66239 55803;55804 55803 2 18328000 0 0 VSVGAPDLSLEASEGSIK LQGDLAVSGDIKCPKVSVGAPDLSLEASEG GAPDLSLEASEGSIKLPKMKLPQFGISTPG K V S I K L 2 0 0 1 0 0 2 2 0 1 2 1 0 0 1 4 0 0 0 2 0 0 18 0 1757.9047 Q09666 Q09666 5385 5402 AHNAK Neuroblast differentiation-associated protein AHNAK yes yes 2 0.050988 50.659 By MS/MS 2.5 1.12 1 1 1 1 4 22522000 0 0 22522000 15127 1190 15869 66240;66241;66242;66243 55805 55805 1 0 0 4351100 VSVGLLLVK FSTTEDYDHEITGLRVSVGLLLVKSVQVKL EITGLRVSVGLLLVKSVQVKLGDSWDVKLG R V S V K S 0 0 0 0 0 0 0 1 0 0 3 1 0 0 0 1 0 0 0 3 0 0 9 0 926.61645 Q96DA0 Q96DA0 79 87 ZG16B Zymogen granule protein 16 homolog B yes yes 2 0.00057182 116.9 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 45082000 45082000 0 0 15128 1763 15870 66244;66245;66246;66247;66248;66249;66250;66251;66252;66253 55806;55807 55806 2 51314000 0 0 VSVHVIEGDHR DLGADYNLSQVCDGKVSVHVIEGDHRTLLE CDGKVSVHVIEGDHRTLLEGSGLESIISII K V S H R T 0 1 0 1 0 0 1 1 2 1 0 0 0 0 0 1 0 0 0 3 0 0 11 0 1246.6418 P49327 P49327 2472 2482 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 0.010893 71.555 By MS/MS 2 0.816 1 1 1 3 5426400 0 0 5426400 15129 853 15871 66254;66255;66256 55808 55808 1 0 0 1149100 VSVINTVDTSHEDMIHDAQMDYYGTR ______________________________ EDMIHDAQMDYYGTRLATCSSDRSVKIFDV M V S T R L 1 1 1 4 0 1 1 1 2 2 0 0 2 0 0 2 3 0 2 3 0 0 26 0 2996.328 P55735 P55735 2 27 SEC13 Protein SEC13 homolog yes yes 3 1.0312E-39 185.14 By MS/MS By MS/MS 6 0 2 1 1 40791000 0 4805000 35986000 15130 942 15872 66257;66258 55809;55810 55810 2 0 1663300 5383900 VSVIQDFVK LTASLQCNSTAQTEKVSVIQDFVKMCLEAN TAQTEKVSVIQDFVKMCLEANIPLEKADHP K V S V K M 0 0 0 1 0 1 0 0 0 1 0 1 0 1 0 1 0 0 0 3 0 0 9 0 1033.5808 Q9UFW8 Q9UFW8 101 109 CGGBP1 CGG triplet repeat-binding protein 1 yes yes 2 0.0056883 95.815 By matching By MS/MS By MS/MS 7 0 3 1 1 1 18768000 1226700 7015400 10526000 15131 2141 15873 66259;66260;66261 55811;55812 55811 2 2643800 4028300 1867700 VSVLNVAVLENPSPFHSPFR ______________________________ VAVLENPSPFHSPFRFEISFECSEALADDL K V S F R F 1 1 2 0 0 0 1 0 1 0 2 0 0 2 3 3 0 0 0 4 0 0 20 0 2208.1691 Q9NVP2 Q9NVP2 4 23 ASF1B Histone chaperone ASF1B yes yes 3 0.0021945 56.529 By MS/MS 7.5 0.5 1 1 2 6889100 0 0 6889100 15132 2070 15874 66262;66263 55813 55813 1 0 0 1080600 VSVQLEASPAFLAVPEK TLKATVLNYLPKCIRVSVQLEASPAFLAVP VQLEASPAFLAVPEKEQETYCICGNGRQTV R V S E K E 3 0 0 0 0 1 2 0 0 0 2 1 0 1 2 2 0 0 0 3 0 0 17 0 1783.972 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 829 845 yes yes 2 0.0068361 72.681 By MS/MS By matching By MS/MS 7.5 0.5 2 2 1 1 2 21034000 3896200 1077300 16060000 + 15133 28 15875 66264;66265;66266;66267 55814;55815 55814 2 3345000 618600 2683700 VSVQLEASPAFLAVPVEK TLKATVLNYLPKCIRVSVQLEASPAFLAVP QLEASPAFLAVPVEKEQAPHCICANGRQTV R V S E K E 3 0 0 0 0 1 2 0 0 0 2 1 0 1 2 2 0 0 0 4 0 0 18 0 1883.0404 P01023 P01023 824 841 A2M Alpha-2-macroglobulin yes yes 2 0.0013059 84.753 By MS/MS 7.33 3.09 1 1 1 3 8551200 8551200 0 0 15134 370 15876 66268;66269;66270 55816;55817 55817 2 7196800 0 0 VSVSPVVHVR GRSFSQPEAGGSHHKVSVSPVVHVRGLCES GSHHKVSVSPVVHVRGLCESVVEADLVEAL K V S V R G 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 5 0 0 10 0 1077.6295 Q8WVV9 Q8WVV9 72 81 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like yes yes 2 5.3298E-05 149.65 By MS/MS 4 0 1 1 2074400 0 2074400 0 15135 1685 15877 66271 55818 55818 1 0 688430 0 VSWLGEEPVAGVWSEK ELAMVPHYGGINRVRVSWLGEEPVAGVWSE SWLGEEPVAGVWSEKGQVEVFALRRLLQVV R V S E K G 1 0 0 0 0 0 3 2 0 0 1 1 0 0 1 2 0 2 0 3 0 0 16 0 1771.8781 Q9BQ67 Q9BQ67 157 172 GRWD1 Glutamate-rich WD repeat-containing protein 1 yes yes 2 0.00030298 99.011 By MS/MS By MS/MS 4.75 0.829 2 1 1 1 3 68390000 0 3837100 64553000 15136 1878 15878 66272;66273;66274;66275 55819;55820 55820 2 0 1273400 10317000 VSWQDLKDFMR VRTENRLIVENLSSRVSWQDLKDFMRQAGE LSSRVSWQDLKDFMRQAGEVTFADAHRPKL R V S M R Q 0 1 0 2 0 1 0 0 0 0 1 1 1 1 0 1 0 1 0 1 0 0 11 1 1423.6918 Q13243 Q13243 119 129 SRSF5 Serine/arginine-rich splicing factor 5 yes yes 3 4.9452E-05 136.48 By MS/MS 5.5 0.5 1 1 2 4871700 0 4871700 0 15137 1233 15879 66276;66277 55821 55821 1 0 1641300 0 VSWTQALR ANVRSDVRTEEQKQRVSWTQALRTIVKNCY TEEQKQRVSWTQALRTIVKNCYKQHGREDL R V S L R T 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 1 1 1 0 1 0 0 8 0 959.51886 Q16656 Q16656 256 263 NRF1 Nuclear respiratory factor 1 yes yes 2 0.040996 75.189 By MS/MS 3 0 1 1 2793000 0 0 2793000 15138 1396 15880 66278 55822 55822 1 0 0 541710 VSYARPSSEVIK INTLNGLRLQSKTIKVSYARPSSEVIKDAN TIKVSYARPSSEVIKDANLYISGLPRTMTQ K V S I K D 1 1 0 0 0 0 1 0 0 1 0 1 0 0 1 3 0 0 1 2 0 0 12 1 1334.7194 Q15717 Q15717 93 104 ELAVL1 ELAV-like protein 1 yes yes 2 0.070029 95.822 By MS/MS 6 0 1 1 18152000 0 18152000 0 15139 1380 15881 66279 55823 55823 1 0 6283800 0 VSYFPTVPGVYIVSTK KVDIQTEDLEDGTCKVSYFPTVPGVYIVST SYFPTVPGVYIVSTKFADEHVPGSPFTVKI K V S T K F 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 2 2 0 2 4 0 0 16 0 1755.9447 O75369 O75369 2059 2074 FLNB Filamin-B yes yes 2 0.0098547 72.891 By MS/MS By MS/MS 1 0 2 1 1 8301800 0 4467200 3834700 15140 254 15882 66280;66281 55824;55825 55824 2 0 2183500 826240 VSYGIGDEEHDQEGR GYSGVGLLSRQCPLKVSYGIGDEEHDQEGR VSYGIGDEEHDQEGRVIVAEFDSFVLVTAY K V S G R V 0 1 0 2 0 1 3 3 1 1 0 0 0 0 0 1 0 0 1 1 0 0 15 0 1689.7231 P27695 P27695 142 156 APEX1 DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial yes yes 2;3 2.354E-17 187.85 By matching By MS/MS 5.75 0.433 1 3 1 3 63829000 0 4976200 58852000 15141 680 15883 66282;66283;66284;66285 55826;55827;55828 55828 3 0 1722600 8747600 VSYIPDEQIAQGPENGR IMKLNGHQLENHALKVSYIPDEQIAQGPEN YIPDEQIAQGPENGRRGGFGSRGQPRQGSP K V S G R R 1 1 1 1 0 2 2 2 0 2 0 0 0 0 2 1 0 0 1 1 0 0 17 0 1871.9014 Q9NZI8 Q9NZI8 151 167 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 yes yes 2 2.3295E-09 170.66 By MS/MS By MS/MS 3 0 2 1 1 25714000 0 5977200 19736000 15142 2104 15884 66286;66287 55829;55830 55830 2 0 2548100 3827900 VSYVQLK RDSQKNFVDPVTKKKVSYVQLKERCRIEPH VDPVTKKKVSYVQLKERCRIEPHTGLLLLS K V S L K E 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 1 0 0 1 2 0 0 7 0 835.48035 P15924 P15924 2181 2187 DSP Desmoplakin yes yes 2 0.069462 89.673 By MS/MS 1 0 1 1 0 0 0 0 15143 572 15885 66288 55831 55831 1 0 0 0 VTAAPQSVCALR FSPSQSLPASHAHLRVTAAPQSVCALRAVD HLRVTAAPQSVCALRAVDQSVLLMKPDAEL R V T L R A 3 1 0 0 1 1 0 0 0 0 1 0 0 0 1 1 1 0 0 2 0 0 12 0 1271.6656 P01023 P01023 587 598 A2M Alpha-2-macroglobulin yes yes 2 0.00012483 137.95 By MS/MS 9 0 1 1 7400800 7400800 0 0 15144 370 15886 66289 55832 55832 1 4154100 0 0 VTADVINAAEK ELQDCEGLIVRSATKVTADVINAAEKLQVV SATKVTADVINAAEKLQVVGRAGTGVDNVD K V T E K L 3 0 1 1 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 2 0 0 11 0 1129.5979 O43175 O43175 59 69 PHGDH D-3-phosphoglycerate dehydrogenase yes yes 2 0.00099547 114.4 By MS/MS By MS/MS 7 3 2 2 2 2 41622000 0 18616000 23006000 15145 190 15887 66290;66291;66292;66293 55833;55834;55835;55836 55835 4 0 6177800 17664000 VTAEVVLAHLGGGSTSR EDVKRTVDLSSHLAKVTAEVVLAHLGGGST AEVVLAHLGGGSTSRATSFLLALEPELEAR K V T S R A 2 1 0 0 0 0 1 3 1 0 2 0 0 0 0 2 2 0 0 3 0 0 17 0 1652.8846 P04843 P04843 49 65 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 yes yes 2;3 0.00033198 97.463 By MS/MS By MS/MS 3 0 3 1 2 27480000 0 7648800 19831000 15146 419 15888 66294;66295;66296 55837;55838;55839 55838 3 0 3260700 3846300 VTAQGPGLEPSGNIANK PFEVYVDKSQGDASKVTAQGPGLEPSGNIA AQGPGLEPSGNIANKTTYFEIFTAGAGTGE K V T N K T 2 0 2 0 0 1 1 3 0 1 1 1 0 0 2 1 1 0 0 1 0 0 17 0 1651.8529 P21333 P21333 384 400 FLNA Filamin-A yes yes 2 7.868E-06 127.17 By MS/MS By MS/MS 2 0.894 2 1 2 3 2 82195000 0 46289000 35906000 15147 623 15889 66297;66298;66299;66300;66301 55840;55841;55842;55843 55841 4 0 22384000 7643800 VTASGPGLSSYGVPASLPVDFAIDAR SPFKVKVLPTYDASKVTASGPGLSSYGVPA GVPASLPVDFAIDARDAGEGLLAVQITDQE K V T A R D 4 1 0 2 0 0 0 3 0 1 2 0 0 1 3 4 1 0 1 3 0 0 26 0 2546.3017 O75369 O75369 1520 1545 FLNB Filamin-B yes yes 2;3 6.6583E-06 69.435 By MS/MS 1 0 2 2 7006800 0 7006800 0 15148 254 15890 66302;66303 55844;55845 55844 2 0 3424800 0 VTATDLDEPDTLHTR FTVPENCRSGTSVGKVTATDLDEPDTLHTR VTATDLDEPDTLHTRLKYKILQQIPDHPKH K V T T R L 1 1 0 3 0 0 1 0 1 0 2 0 0 0 1 0 4 0 0 1 0 0 15 0 1682.8111 Q08554 Q08554 264 278 DSC1 Desmocollin-1 yes yes 2;3 3.2731E-197 304.57 By MS/MS By MS/MS 6 3.06 4 1 2 3 2 2 3 2 4 15 8 286780000 231180000 0 55604000 15149 1185 15891 66304;66305;66306;66307;66308;66309;66310;66311;66312;66313;66314;66315;66316;66317;66318;66319;66320;66321;66322;66323;66324;66325;66326 55846;55847;55848;55849;55850;55851;55852;55853;55854;55855;55856;55857;55858;55859;55860;55861;55862;55863;55864 55851 19 213670000 0 29275000 VTAVPVSAADSTEELAEVEEGVGVVGEDNDAAAR ______________________________ EGVGVVGEDNDAAARGAEAFGDSEEDGEDV R V T A R G 7 1 1 3 0 0 6 3 0 0 1 0 0 0 1 2 2 0 0 7 0 0 34 0 3355.5903 Q99549 Q99549 10 43 MPHOSPH8 M-phase phosphoprotein 8 yes yes 3 2.262E-25 91.418 By MS/MS 2 0 1 1 5317900 0 0 5317900 15150 1849 15892 66327 55865 55865 1 0 0 1201700 VTDDLVCLVYK VVLKYRHSDGNLCVKVTDDLVCLVYKTDQA LCVKVTDDLVCLVYKTDQAQDVKKIEKFHS K V T Y K T 0 0 0 2 1 0 0 0 0 0 2 1 0 0 0 0 1 0 1 3 0 0 11 0 1323.6744 P49458 P49458 42 52 SRP9 Signal recognition particle 9 kDa protein yes yes 2;3 0.00080981 116.3 By MS/MS By MS/MS By MS/MS 7.38 3 1 1 1 1 1 3 6 1 1 37649000 22474000 4457100 10718000 15151 857 15893 66328;66329;66330;66331;66332;66333;66334;66335 55866;55867;55868 55867 3 19804000 22549000 23441000 VTDLLGGLFSK SDNAFIRASRALTDKVTDLLGGLFSKTEMS LTDKVTDLLGGLFSKTEMSEVLTEILRVDP K V T S K T 0 0 0 1 0 0 0 2 0 0 3 1 0 1 0 1 1 0 0 1 0 0 11 0 1148.6441 O43615 O43615 283 293 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 yes yes 2 0.00032714 121.83 By MS/MS By MS/MS 5 0 2 1 1 9270800 2964600 0 6306200 15152 203 15894 66336;66337 55869;55870 55869 1 2375000 0 879610 VTDPVGDIVSFMHSFEEK FRFALRFIRPDPRSRVTDPVGDIVSFMHSF PVGDIVSFMHSFEEKYGRAHPVFYQGTYSQ R V T E K Y 0 0 0 2 0 0 2 1 1 1 0 1 1 2 1 2 1 0 0 3 0 0 18 0 2035.9561 Q96CS3 Q96CS3 129 146 FAF2 FAS-associated factor 2 yes yes 3 0.0029267 61.477 By MS/MS 4 0 1 1 3756200 0 0 3756200 15153 1760 15895 66338 55871 55871 1 0 0 613500 VTDSSVSVQLR KAKNRMEPGGLRRTRVTDSSVSVQLRE___ RRTRVTDSSVSVQLRE______________ R V T L R E 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 3 1 0 0 3 0 0 11 0 1189.6303 Q6ZVX7 Q6ZVX7 264 274 NCCRP1 F-box only protein 50 yes yes 2 0.011624 91.584 By MS/MS 1 0 1 1 0 0 0 0 15154 1510 15896 66339 55872 55872 1 0 0 0 VTEAEIVPMGK NSSDMSAHVTSPSGRVTEAEIVPMGKNSHC PSGRVTEAEIVPMGKNSHCVRFVPQEMGVH R V T G K N 1 0 0 0 0 0 2 1 0 1 0 1 1 0 1 0 1 0 0 2 0 0 11 0 1172.6111 O75369 O75369 2140 2150 FLNB Filamin-B yes yes 2 0.023441 82.287 By MS/MS 1 0 1 1 4882000 0 4882000 0 15155 254 15897 66340 55873 55873 1 0 2386200 0 VTEGLTDVILYHQPDDK PKSKTKEQILEEFSKVTEGLTDVILYHQPD EGLTDVILYHQPDDKKKNRGFCFLEYEDHK K V T D K K 0 0 0 3 0 1 1 1 1 1 2 1 0 0 1 0 2 0 1 2 0 0 17 0 1941.9684 O60506 O60506 266 282 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2;3 1.6288E-13 180.09 By matching By MS/MS By MS/MS 4.1 1.14 4 3 1 2 1 2 7 94490000 4037800 12519000 77933000 15156 227 15898 66341;66342;66343;66344;66345;66346;66347;66348;66349;66350 55874;55875;55876;55877;55878;55879 55877 6 4658700 5057100 13789000 VTEGLTDVILYHQPDDKKK PKSKTKEQILEEFSKVTEGLTDVILYHQPD LTDVILYHQPDDKKKNRGFCFLEYEDHKTA K V T K K N 0 0 0 3 0 1 1 1 1 1 2 3 0 0 1 0 2 0 1 2 0 0 19 2 2198.1583 O60506 O60506 266 284 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 4 0.0028661 60.618 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 19503000 0 10809000 8693800 15157 227 15899 66351;66352;66353 55880;55881 55880 2 0 4052000 1686200 VTEGLVDVILYHQPDDK PKNKTKENILEEFSKVTEGLVDVILYHQPD EGLVDVILYHQPDDKKKNRGFCFLEYEDHK K V T D K K 0 0 0 3 0 1 1 1 1 1 2 1 0 0 1 0 1 0 1 3 0 0 17 0 1939.9891 O43390 O43390 269 285 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 3 0.00058652 80.603 By MS/MS By MS/MS 2.25 0.829 1 1 2 1 3 78644000 0 6503400 72140000 15158 195 15900 66354;66355;66356;66357 55882;55883;55884;55885 55884 4 0 2772400 14519000 VTEGLVDVILYHQPDDKKK PKNKTKENILEEFSKVTEGLVDVILYHQPD LVDVILYHQPDDKKKNRGFCFLEYEDHKSA K V T K K N 0 0 0 3 0 1 1 1 1 1 2 3 0 0 1 0 1 0 1 3 0 0 19 2 2196.179 O43390 O43390 269 287 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 4 0.0004385 74.543 By MS/MS 2.5 0.5 1 1 2 10887000 0 10887000 0 15159 195 15901 66358;66359 55886 55886 1 0 4724000 0 VTELALTASDR REMKPVIFLDVFLPRVTELALTASDRQTKV FLPRVTELALTASDRQTKVAACELLHSMVM R V T D R Q 2 1 0 1 0 0 1 0 0 0 2 0 0 0 0 1 2 0 0 1 0 0 11 0 1174.6194 P78527 P78527 914 924 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 5.5228E-19 185.81 By MS/MS 1 0 1 1 12688000 0 12688000 0 15160 1089 15902 66360 55887 55887 1 0 6201500 0 VTELEDEVR MEKSVLGGQDQLRVRVTELEDEVRNLRKIN DQLRVRVTELEDEVRNLRKINRDLFDFSTR R V T V R N 0 1 0 1 0 0 3 0 0 0 1 0 0 0 0 0 1 0 0 2 0 0 9 0 1088.535 Q9BV38 Q9BV38 402 410 WDR18 WD repeat-containing protein 18 yes yes 2 2.0909E-23 188.76 By MS/MS By MS/MS 4.67 0.471 1 2 1 2 79360000 0 9078100 70282000 15161 1910 15903 66361;66362;66363 55888;55889 55889 2 0 2340100 9941700 VTELQQQPLCTSVNTIYDNAVQGLR LLLLFGVAGGLVACRVTELQQQPLCTSVNT TSVNTIYDNAVQGLRRHEILQWVLQTDSQQ R V T L R R 1 1 2 1 1 4 1 1 0 1 3 0 0 0 1 1 3 0 1 3 0 0 25 0 2846.4233 Q96AG4 Q96AG4 268 292 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 3 8.994E-13 97.974 By matching By MS/MS 6 0 2 1 1 15457000 0 3862800 11594000 15162 1751 15904 66364;66365 55890 55890 1 0 1337200 1734600 VTEQEWR EEQRKRLQELDAASKVTEQEWREKAKKDLE QELDAASKVTEQEWREKAKKDLEEWNQRQS K V T W R E 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 7 0 946.45084 P09497 P09497 123 129 CLTB Clathrin light chain B yes yes 2 0.012186 108.24 By MS/MS 6 0 1 1 0 0 0 0 15163 487 15905 66366 55891 55891 1 0 0 0 VTFALPDDAETEDTGVLNVKK QENEDNKQHKESLKRVTFALPDDAETEDTG DDAETEDTGVLNVKKNSDEVKSSFEKRQEK R V T K K N 2 0 1 3 0 0 2 1 0 0 2 2 0 1 1 0 3 0 0 3 0 0 21 1 2261.1427 O00566 O00566 331 351 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 3 5.931E-05 76.027 By MS/MS 2 0 1 1 2087100 0 2087100 0 15164 129 15906 66367 55892 55892 1 0 939830 0 VTGDTVYNMLR GRADELNNKHTIFGKVTGDTVYNMLRLSEV IFGKVTGDTVYNMLRLSEVDIDDDERPHNP K V T L R L 0 1 1 1 0 0 0 1 0 0 1 0 1 0 0 0 2 0 1 2 0 0 11 0 1267.6231 Q6UX04 Q6UX04 133 143 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes yes 2 1.2232E-26 201.07 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 31063000 0 11575000 19488000 15165 1505 15907 66368;66369;66370;66371 55893;55894;55895;55896 55894 4 0 3991300 3499300 VTGEADVEFATHEDAVAAMAK LNPMRVHIEIGPDGRVTGEADVEFATHEDA VEFATHEDAVAAMAKDKANMQHRYVELFLN R V T A K D 6 0 0 2 0 0 3 1 1 0 0 1 1 1 0 0 2 0 0 3 0 0 21 0 2160.9997 P55795 P55795 327 347 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 2 0.025417 48.527 By MS/MS 5 0.816 1 1 1 3 23232000 0 0 23232000 15166 944 15908 66372;66373;66374 55897 55897 1 0 0 3390900 VTGEADVEFATHEDAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEDA VEFATHEDAVAAMSKDKANMQHRYVELFLN R V T S K D 5 0 0 2 0 0 3 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2176.9947 P31943 P31943 327 347 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 3 0.016198 42.833 By MS/MS 4.5 0.5 1 1 2 17446000 0 0 17446000 15167 722 15909 66375;66376 55898 55898 328 1 0 0 2621700 VTGEADVEFATHEEAVAAMSK LNPVRVHIEIGPDGRVTGEADVEFATHEEA VEFATHEEAVAAMSKDRANMQHRYIELFLN R V T S K D 5 0 0 1 0 0 4 1 1 0 0 1 1 1 0 1 2 0 0 3 0 0 21 0 2191.0103 P52597 P52597 327 347 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 2;3 9.2505E-29 194.19 By MS/MS By MS/MS 4.75 0.433 1 3 1 3 69589000 0 6006000 63583000 15168 910 15910 66377;66378;66379;66380 55899;55900;55901;55902;55903 55903 5 0 1548200 9189000 VTGQHPEVPPAFWNNAFTLLSAVSLPR TRYHTMQAAVDAVARVTGQHPEVPPAFWNN WNNAFTLLSAVSLPRREPTVSSFYVKRAEL R V T P R R 3 1 2 0 0 1 1 1 1 0 3 0 0 2 4 2 2 1 0 3 0 0 27 0 2947.5345 Q9BVI4 Q9BVI4 195 221 NOC4L Nucleolar complex protein 4 homolog yes yes 3;4 7.666E-21 104.3 By MS/MS 4 0 2 2 14845000 0 0 14845000 15169 1914 15911 66381;66382 55904;55905 55904 2 0 0 2424600 VTGVPLSYLLSR LERLMVLVNAVEMARVTGVPLSYLLSRGQQ MARVTGVPLSYLLSRGQQVKVVSQLLRQAM R V T S R G 0 1 0 0 0 0 0 1 0 0 3 0 0 0 1 2 1 0 1 2 0 0 12 0 1303.75 P28340 P28340 538 549 POLD1 DNA polymerase delta catalytic subunit yes yes 2 0.020653 84.31 By MS/MS 2 0 1 1 3501300 0 3501300 0 15170 691 15912 66383 55906 55906 1 0 1576700 0 VTHAVVTVPAYFNDAQR LTKMKETAEAYLGKKVTHAVVTVPAYFNDA HAVVTVPAYFNDAQRQATKDAGTIAGLNVM K V T Q R Q 3 1 1 1 0 1 0 0 1 0 0 0 0 1 1 0 2 0 1 4 0 0 17 0 1886.9639 P11021 P11021 165 181 HSPA5 78 kDa glucose-regulated protein yes yes 3 0.001192 73.279 By MS/MS By MS/MS 3 0 2 1 1 61191000 0 30111000 31080000 15171 516 15913 66384;66385 55907;55908 55907 2 0 12836000 6028100 VTIAQGGVLPNIQAVLLPK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV QGGVLPNIQAVLLPKKTESHHKTK______ K V T P K K 2 0 1 0 0 2 0 2 0 2 3 1 0 0 2 0 1 0 0 3 0 0 19 0 1930.1615 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;Q16777;Q6FI13;Q93077;Q7L7L0;P04908 Q99878 101 119 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3 9.3053E-31 198.03 By MS/MS By MS/MS By MS/MS 6.18 2.84 6 5 5 4 4 4 6 19 7 6 13 29 24 47284000000 1130700000 22250000000 23903000000 15172 497;1399;1473;1740 15914 66386;66387;66388;66389;66390;66391;66392;66393;66394;66395;66396;66397;66398;66399;66400;66401;66402;66403;66404;66405;66406;66407;66408;66409;66410;66411;66412;66413;66414;66415;66416;66417;66418;66419;66420;66421;66422;66423;66424;66425;66426;66427;66428;66429;66430;66431;66432;66433;66434;66435;66436;66437;66438;66439;66440;66441;66442;66443;66444;66445;66446;66447;66448;66449;66450;66451 55909;55910;55911;55912;55913;55914;55915;55916;55917;55918;55919;55920;55921;55922;55923;55924;55925;55926;55927;55928;55929;55930;55931;55932;55933;55934;55935;55936;55937;55938;55939;55940;55941;55942;55943;55944;55945;55946;55947;55948;55949;55950;55951;55952;55953;55954;55955;55956;55957;55958;55959;55960;55961;55962;55963;55964;55965;55966;55967;55968;55969;55970;55971;55972;55973;55974;55975;55976;55977;55978;55979;55980;55981;55982;55983;55984;55985;55986;55987;55988;55989;55990;55991;55992;55993;55994;55995;55996;55997;55998;55999;56000;56001;56002;56003;56004;56005;56006;56007;56008;56009;56010;56011;56012;56013;56014;56015;56016;56017;56018;56019;56020;56021;56022;56023;56024;56025;56026;56027;56028;56029;56030;56031;56032;56033;56034;56035;56036;56037;56038;56039;56040;56041;56042;56043;56044;56045;56046;56047;56048;56049;56050;56051 55910 143 980320000 11144000000 4614300000 VTIAQGGVLPNIQAVLLPKK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV GGVLPNIQAVLLPKKTESHHKTK_______ K V T K K T 2 0 1 0 0 2 0 2 0 2 3 2 0 0 2 0 1 0 0 3 0 0 20 1 2058.2565 Q99878;Q96KK5;P0C0S8;Q9BTM1;P20671;Q16777;Q6FI13;Q93077;Q7L7L0;P04908 Q99878 101 120 HIST1H2AJ;HIST1H2AH;HIST1H2AG;H2AFJ;HIST1H2AD;HIST2H2AC;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A.J;Histone H2A type 1-D;Histone H2A type 2-C;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 2;3;4 2.1109E-17 172.57 By matching By MS/MS By MS/MS 8 0.632 2 6 2 1 3 6 381280000 901410 21269000 359110000 15173 497;1399;1473;1740 15915 66452;66453;66454;66455;66456;66457;66458;66459;66460;66461 56052;56053;56054;56055;56056;56057;56058;56059;56060;56061;56062;56063 56053 12 773890 10226000 59145000 VTIAQGGVLPNIQAVLLPKKTESHHK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV IQAVLLPKKTESHHKTK_____________ K V T H K T 2 0 1 0 0 2 1 2 2 2 3 3 0 0 2 1 2 0 0 3 0 0 26 2 2777.5916 Q99878;Q96KK5;P0C0S8;P20671;Q6FI13;Q93077;Q7L7L0;P04908 Q99878 101 126 HIST1H2AJ;HIST1H2AH;HIST1H2AG;HIST1H2AD;HIST2H2AA3;HIST1H2AC;HIST3H2A;HIST1H2AB Histone H2A type 1-J;Histone H2A type 1-H;Histone H2A type 1;Histone H2A type 1-D;Histone H2A type 2-A;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E no no 4;5 1.9839E-12 93.633 By MS/MS By MS/MS 8 0 7 4 3 70960000 0 38128000 32832000 15174 497;1473;1740 15916 66462;66463;66464;66465;66466;66467;66468 56064;56065;56066;56067;56068;56069 56066 6 0 17347000 5033500 VTIAQGGVLPNIQAVLLPKKTESHK LAIRNDEELNKLLGKVTIAQGGVLPNIQAV NIQAVLLPKKTESHKAKSK___________ K V T H K A 2 0 1 0 0 2 1 2 1 2 3 3 0 0 2 1 2 0 0 3 0 0 25 2 2640.5327 Q16777 Q16777 101 125 HIST2H2AC Histone H2A type 2-C yes yes 4 0.0051148 40.756 By MS/MS 8 0 1 1 2753500 0 2753500 0 15175 1399 15917 66469 56070 56070 1 0 1252700 0 VTIDPENNLISIWNNGK AADNKQRDPKMSCIRVTIDPENNLISIWNN IDPENNLISIWNNGKGIPVVEHKVEKMYVP R V T G K G 0 0 4 1 0 0 1 1 0 3 1 1 0 0 1 1 1 1 0 1 0 0 17 0 1925.9847 P11388 P11388 107 123 TOP2A DNA topoisomerase 2-alpha yes yes 2;3 2.8177E-19 186.36 By MS/MS By MS/MS 1.71 0.7 3 3 1 3 4 71117000 0 16838000 54279000 15176 524 15918 66470;66471;66472;66473;66474;66475;66476 56071;56072;56073;56074;56075 56073 5 0 7891500 11760000 VTIKPAPETEK AKAKDQLTCNKFDLKVTIKPAPETEKRPQD FDLKVTIKPAPETEKRPQDAKNTMILEICT K V T E K R 1 0 0 0 0 0 2 0 0 1 0 2 0 0 2 0 2 0 0 1 0 0 11 1 1211.6762 P01024 P01024 1365 1375 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 3 0.014438 70.728 By MS/MS 8.5 1.12 1 1 1 1 4 53268000 53268000 0 0 15177 371 15919 66477;66478;66479;66480 56076 56076 1 110470000 0 0 VTIMGIYSIK YCDRYLCDKVVPGNRVTIMGIYSIKKFGLT VPGNRVTIMGIYSIKKFGLTTSRGRDRVGV R V T I K K 0 0 0 0 0 0 0 1 0 3 0 1 1 0 0 1 1 0 1 1 0 0 10 0 1123.6311 P33992 P33992 263 272 MCM5 DNA replication licensing factor MCM5 yes yes 2 0.037078 76.17 By MS/MS 3 0 1 1 2465200 0 0 2465200 15178 732 15920 66481 56077 56077 1 0 0 478130 VTIMPKDIQLAR GLFEDTNLCAIHAKRVTIMPKDIQLARRIR AKRVTIMPKDIQLARRIRGERA________ R V T A R R 1 1 0 1 0 1 0 0 0 2 1 1 1 0 1 0 1 0 0 1 0 0 12 1 1383.7908 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 118 129 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2;3 2.8744E-24 196.88 By MS/MS By MS/MS 7.58 0.954 2 3 5 2 6 6 710600000 0 317780000 392820000 15179 1114;1512 15921;15922 66482;66483;66484;66485;66486;66487;66488;66489;66490;66491;66492;66493 56078;56079;56080;56081;56082;56083;56084;56085;56086;56087;56088;56089;56090;56091;56092;56093;56094;56095;56096 56093 529 19 0 150280000 68573000 VTLDPVQLESSLLR VPWIEDCKAKMSELRVTLDPVQLESSLLRS RVTLDPVQLESSLLRSKAMLNEVEKRRSLL R V T L R S 0 1 0 1 0 1 1 0 0 0 4 0 0 0 1 2 1 0 0 2 0 0 14 0 1568.8774 Q9UPN3 Q9UPN3 4936 4949 MACF1 Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 yes yes 2 0.03179 94.616 By MS/MS 1 0 1 1 1303100 0 1303100 0 15180 2214 15923 66494 56097 56097 0 0 636950 0 VTLDWAKPK AAKEAMEDGEIDGNKVTLDWAKPKGEGGFG EIDGNKVTLDWAKPKGEGGFGGRGGGRGGF K V T P K G 1 0 0 1 0 0 0 0 0 0 1 2 0 0 1 0 1 1 0 1 0 0 9 1 1056.5968 P19338 P19338 640 648 NCL Nucleolin yes yes 2 0.061094 91.853 By MS/MS 2.5 1.12 1 1 1 1 4 145870000 0 0 145870000 15181 604 15924 66495;66496;66497;66498 56098 56098 1 0 0 29117000 VTLGDTLTR VEVALPPPAEHEVKKVTLGDTLTRRSISQQ EHEVKKVTLGDTLTRRSISQQKSGVSITID K V T T R R 0 1 0 1 0 0 0 1 0 0 2 0 0 0 0 0 3 0 0 1 0 0 9 0 974.53966 Q9UKV3 Q9UKV3 971 979 ACIN1 Apoptotic chromatin condensation inducer in the nucleus yes yes 2 1.3563E-16 178.99 By MS/MS By MS/MS 2.33 1.11 2 1 2 1 4 2 83912000 0 34876000 49036000 15182 2184 15925 66499;66500;66501;66502;66503;66504 56099;56100;56101;56102;56103 56100 5 0 15187000 9970600 VTLGTQPTVLR FGLNIETGLLSDRKKVTLGTQPTVLRTFRS DRKKVTLGTQPTVLRTFRSLSTTNVFACSD K V T L R T 0 1 0 0 0 1 0 1 0 0 2 0 0 0 1 0 3 0 0 2 0 0 11 0 1183.6925 Q16531 Q16531 629 639 DDB1 DNA damage-binding protein 1 yes yes 2 0.00032336 132.13 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 41789000 0 12829000 28960000 15183 1387 15926 66505;66506;66507;66508 56104;56105;56106 56104 3 0 5776900 6297500 VTLILELLQHK DLESVQEVGGSYWQRVTLILELLQHKKKLR YWQRVTLILELLQHKKKLRSPQILVPTLFN R V T H K K 0 0 0 0 0 1 1 0 1 1 4 1 0 0 0 0 1 0 0 1 0 0 11 0 1305.802 Q9H583 Q9H583 1207 1217 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2;3 2.145E-05 149.72 By MS/MS 1.33 0.471 2 1 3 13035000 0 0 13035000 15184 1984 15927 66509;66510;66511 56107;56108 56108 2 0 0 2830100 VTLLTPAGATGSGGGTSGDSSK ______________________________ GATGSGGGTSGDSSKGEDKQDRNKEKKEAL R V T S K G 2 0 0 1 0 0 0 6 0 0 2 1 0 0 1 4 4 0 0 1 0 0 22 0 1919.9436 Q9BZI7 Q9BZI7 14 35 UPF3B Regulator of nonsense transcripts 3B yes yes 2 9.3729E-20 134.14 By MS/MS 3.5 0.5 1 1 2 4587000 0 4587000 0 15185 1943 15928 66512;66513 56109 56109 1 0 1669800 0 VTLMLLDQNNR KGPNDALLRWPFNQKVTLMLLDQNNREHVI FNQKVTLMLLDQNNREHVIDAFRPDVTSSS K V T N R E 0 1 2 1 0 1 0 0 0 0 3 0 1 0 0 0 1 0 0 1 0 0 11 0 1315.6918 Q12933 Q12933 430 440 TRAF2 TNF receptor-associated factor 2 yes yes 2 2.0985E-26 197.1 By MS/MS 4 0.816 1 1 1 3 21583000 0 0 21583000 15186 1213 15929 66514;66515;66516 56110;56111 56110 2 0 0 3553700 VTLMQLPTR IIAFWVPEDKDIPARVTLMQLPTRQEIRVR KDIPARVTLMQLPTRQEIRVRNLFNVVDCK R V T T R Q 0 1 0 0 0 1 0 0 0 0 2 0 1 0 1 0 2 0 0 1 0 0 9 0 1057.5954 P55884 P55884 493 501 EIF3B Eukaryotic translation initiation factor 3 subunit B yes yes 2 1.3089E-16 179.21 By MS/MS By MS/MS 3.2 1.17 2 1 1 1 3 2 16105000 0 8646100 7459100 15187 947 15930 66517;66518;66519;66520;66521 56112;56113;56114 56112 3 0 3692500 1476200 VTLNTLQAWSK LQPSSQNTKAHPSRRVTLNTLQAWSKTTPR PSRRVTLNTLQAWSKTTPRRINLTPLKTDT R V T S K T 1 0 1 0 0 1 0 0 0 0 2 1 0 0 0 1 2 1 0 1 0 0 11 0 1259.6874 Q13112 Q13112 484 494 CHAF1B Chromatin assembly factor 1 subunit B yes yes 2 1.7219E-09 166.33 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 31755000 0 15802000 15953000 15188 1221 15931 66522;66523;66524 56115;56116 56115 2 0 6353100 3094100 VTLPGLKEDSQILK KGPVNSCQGKNYNLKVTLPGLKEDSQILKI KVTLPGLKEDSQILKIRLLPGHPRRLKVKP K V T L K I 0 0 0 1 0 1 1 1 0 1 3 2 0 0 1 1 1 0 0 1 0 0 14 1 1539.8872 A6NHR9 A6NHR9 906 919 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 3 0.033469 51.643 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 16573000 0 6707400 9865200 15189 15 15932 66525;66526;66527 56117;56118 56118 2 0 3278500 2145000 VTLTSEEEAR VPCILGQNGISDLVKVTLTSEEEARLKKSA SDLVKVTLTSEEEARLKKSADTLWGIQKEL K V T A R L 1 1 0 0 0 0 3 0 0 0 1 0 0 0 0 1 2 0 0 1 0 0 10 0 1133.5564 P00338 P00338 306 315 LDHA L-lactate dehydrogenase A chain yes yes 2 0.00013389 144.09 By MS/MS By MS/MS 6.33 0.471 2 1 1 2 64898000 9095800 0 55803000 15190 356 15933 66528;66529;66530 56119;56120 56120 2 12111000 0 8517700 VTLVQTLEIQR IGEKLHRTELATQEKVTLVQTLEIQRQQSD TQEKVTLVQTLEIQRQQSDHDAERLREAIA K V T Q R Q 0 1 0 0 0 2 1 0 0 1 2 0 0 0 0 0 2 0 0 2 0 0 11 0 1298.7558 Q15149 Q15149 2565 2575 PLEC Plectin yes yes 2 7.3637E-27 203.29 By MS/MS By MS/MS 1 0 2 1 1 17376000 0 4774000 12602000 15191 1348 15934 66531;66532 56121;56122 56121 2 0 2333500 2715400 VTMLISGR PMTLTTLEGGNLEAKVTMLISGRCQEVKAV GGNLEAKVTMLISGRCQEVKAVLEKTDEPG K V T G R C 0 1 0 0 0 0 0 1 0 1 1 0 1 0 0 1 1 0 0 1 0 0 8 0 875.48987 P31025 P31025 71 78 LCN1 Lipocalin-1 yes yes 2 5.3345E-28 197.84 By MS/MS By matching By matching 6.15 3.07 2 2 1 1 2 2 2 2 2 4 18 1 1 4153800000 4137600000 6912000 9239700 15192 716 15935;15936 66533;66534;66535;66536;66537;66538;66539;66540;66541;66542;66543;66544;66545;66546;66547;66548;66549;66550;66551;66552 56123;56124;56125;56126;56127;56128;56129;56130;56131;56132;56133;56134;56135;56136;56137;56138 56134 314 16 5100700000 34969000 20208000 VTMQNLNDR GGFGGDGGLLSGNEKVTMQNLNDRLASYLD LSGNEKVTMQNLNDRLASYLDKVRALEESN K V T D R L 0 1 2 1 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 1 0 0 9 0 1089.5237 P13645;CON__P13645;Q7Z3Y7;CON__Q7Z3Y7;CON__Q148H6;Q7Z3Y8;CON__Q7Z3Y8;CON__Q7Z3Z0;Q7Z3Z0;Q7Z3Y9;CON__Q7Z3Y9;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779;CON__Q9Z2K1;CON__Q3ZAW8;CON__P02535-1 P13645 148 156 KRT10;KRT28;KRT27;KRT25;KRT26;KRT14;KRT16 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 28;Keratin, type I cytoskeletal 27;Keratin, type I cytoskeletal 25;Keratin, type I cytoskeletal 26;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 2 1.4305E-32 205.57 By MS/MS By MS/MS By MS/MS 5.53 2.91 5 4 5 4 3 5 6 4 4 5 15 14 16 16442000000 13046000000 729970000 2666600000 + 15193 56;35;53;36 15937;15938 66553;66554;66555;66556;66557;66558;66559;66560;66561;66562;66563;66564;66565;66566;66567;66568;66569;66570;66571;66572;66573;66574;66575;66576;66577;66578;66579;66580;66581;66582;66583;66584;66585;66586;66587;66588;66589;66590;66591;66592;66593;66594;66595;66596;66597 56139;56140;56141;56142;56143;56144;56145;56146;56147;56148;56149;56150;56151;56152;56153;56154;56155;56156;56157;56158;56159;56160;56161;56162;56163;56164;56165;56166;56167;56168;56169;56170;56171;56172;56173;56174;56175;56176;56177;56178;56179;56180;56181;56182;56183;56184;56185;56186;56187;56188;56189 56156 13;14 51 14145000000 494250000 1111000000 VTMQNLNDRLASYLDKVR GGFGGDGGLLSGNEKVTMQNLNDRLASYLD QNLNDRLASYLDKVRALEESNYELEGKIKE K V T V R A 1 2 2 2 0 1 0 0 0 0 3 1 1 0 0 1 1 0 1 2 0 0 18 2 2135.1157 P13645;CON__P13645;CON__P02533;P02533;CON__A2A4G1;CON__P08779;P08779 P13645 148 165 KRT10;KRT14;KRT16 Keratin, type I cytoskeletal 10;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 16 no no 3;4 2.2315E-09 150.59 By MS/MS 7.12 2.52 1 1 1 1 3 1 8 69487000 69487000 0 0 + 15194 56;35;53 15939;15940 66598;66599;66600;66601;66602;66603;66604;66605 56190;56191;56192;56193;56194;56195 56191 13 6 46135000 0 0 VTNGAFTGEISPGMIK KLDPKIAVAAQNCYKVTNGAFTGEISPGMI TNGAFTGEISPGMIKDCGATWVVLGHSERR K V T I K D 1 0 1 0 0 0 1 3 0 2 0 1 1 1 1 1 2 0 0 1 0 0 16 0 1620.8181 P60174 P60174 107 122 TPI1 Triosephosphate isomerase yes yes 2 3.7572E-05 120.53 By MS/MS By MS/MS 7 0 2 1 1 11559000 4248000 7311100 0 15195 962 15941 66606;66607 56196;56197 56197 2 9155300 4198100 0 VTNLLMLK VTEGEVISLGLPFGKVTNLLMLKGKNQAFI LGLPFGKVTNLLMLKGKNQAFIEMNTEEAA K V T L K G 0 0 1 0 0 0 0 0 0 0 3 1 1 0 0 0 1 0 0 1 0 0 8 0 930.55722 P26599;O95758 P26599 85 92 PTBP1;PTBP3 Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3 no no 2 0.0026694 107.67 By MS/MS By MS/MS By MS/MS 3.58 2.02 3 1 1 4 1 2 2 7 3 853420000 32133000 558980000 262300000 15196 671;337 15942 66608;66609;66610;66611;66612;66613;66614;66615;66616;66617;66618;66619 56198;56199;56200;56201;56202;56203;56204;56205;56206;56207;56208 56202 11 25328000 191020000 43501000 VTNQLQYLHK NPPPPEVSNPKKPGRVTNQLQYLHKVVMKA KKPGRVTNQLQYLHKVVMKALWKHQFAWPF R V T H K V 0 0 1 0 0 2 0 0 1 0 2 1 0 0 0 0 1 0 1 1 0 0 10 0 1242.6721 P25440 P25440 75 84 BRD2 Bromodomain-containing protein 2 yes yes 2;3 0.015297 85.676 By MS/MS 2 0.707 1 2 1 4 32757000 0 0 32757000 15197 658 15943 66620;66621;66622;66623 56209;56210 56210 2 0 0 7240400 VTNRDIICQIAYAR DKNKYNTPKYRMIVRVTNRDIICQIAYARI RVTNRDIICQIAYARIEGDMIVCAAYAHEL R V T A R I 2 2 1 1 1 1 0 0 0 3 0 0 0 0 0 0 1 0 1 1 0 0 14 1 1691.8777 P46777 P46777 55 68 RPL5 60S ribosomal protein L5 yes yes 3 0.0022101 81.619 By MS/MS 6 0 1 1 5090600 0 5090600 0 15198 828 15944 66624 56211 56211 1 0 1762200 0 VTPDIEESLLEPENEK EGFKNTLETSSLNFKVTPDIEESLLEPENE TPDIEESLLEPENEKILDILGETCKSEPVK K V T E K I 0 0 1 1 0 0 5 0 0 1 2 1 0 0 2 1 1 0 0 1 0 0 16 0 1840.8942 Q14151 Q14151 200 215 SAFB2 Scaffold attachment factor B2 yes yes 2 2.9892E-08 165.58 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 50966000 0 9321600 41644000 15199 1285 15945 66625;66626;66627 56212;56213;56214;56215 56213 4 0 4197600 9323000 VTPEPGAGPTQGLLR RGLLASDLNTDGDMRVTPEPGAGPTQGLLR VTPEPGAGPTQGLLRATEATAMAMGRGEGL R V T L R A 1 1 0 0 0 1 1 3 0 0 2 0 0 0 3 0 2 0 0 1 0 0 15 0 1491.8045 Q86YP4 Q86YP4 48 62 GATAD2A Transcriptional repressor p66-alpha yes yes 2 0.0039051 85.845 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 32050000 0 10806000 21244000 15200 1563 15946 66628;66629;66630 56216;56217 56216 2 0 4606600 3946600 VTPGSGALQGQSVSVWELLFYR HQLSEELRCALRDARVTPGSGALQGQSVSV LQGQSVSVWELLFYREVSEDRRQDLLSRYR R V T Y R E 1 1 0 0 0 2 1 3 0 0 3 0 0 1 1 3 1 1 1 3 0 0 22 0 2393.2379 P58107 P58107 2440 2461 EPPK1 Epiplakin yes no 2;3 1.0356E-23 167.69 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 1 5 17228000 0 463410 16764000 15201 958 15947 66631;66632;66633;66634;66635;66636 56218;56219;56220 56219 3 0 226510 3587300 VTPNEGLTVSFPFGK HKLEEGEVAMGRVVKVTPNEGLTVSFPFGK VTPNEGLTVSFPFGKIGTVSIFHMSDSYSE K V T G K I 0 0 1 0 0 0 1 2 0 0 1 1 0 2 2 1 2 0 0 2 0 0 15 0 1591.8246 Q14690 Q14690 1240 1254 PDCD11 Protein RRP5 homolog yes yes 2 0.00039014 116.01 By MS/MS 1 0 1 1 25115000 0 25115000 0 15202 1314 15948 66637 56221 56221 1 0 12276000 0 VTPQSLFILFGVYGDVQR AGNSVLLVSNLNPERVTPQSLFILFGVYGD QSLFILFGVYGDVQRVKILFNKKENALVQM R V T Q R V 0 1 0 1 0 2 0 2 0 1 2 0 0 2 1 1 1 0 1 3 0 0 18 0 2038.0888 P26599 P26599 349 366 PTBP1 Polypyrimidine tract-binding protein 1 yes yes 2;3 2.1029E-51 219.35 By MS/MS 2.71 1.03 1 2 2 2 7 90180000 0 0 90180000 15203 671 15949 66638;66639;66640;66641;66642;66643;66644 56222;56223;56224;56225;56226;56227 56226 5 0 0 15820000 VTPTRTEIIILATR TRELAEDGYSGVEVRVTPTRTEIIILATRT RVTPTRTEIIILATRTQNVLGEKGRRIREL R V T T R T 1 2 0 0 0 0 1 0 0 3 1 0 0 0 1 0 4 0 0 1 0 0 14 1 1582.9406 P23396 P23396 41 54 RPS3 40S ribosomal protein S3 yes yes 3 0.0023636 80.632 By MS/MS 6 0 1 1 6918600 0 6918600 0 15204 641 15950 66645 56228 56228 1 0 2395000 0 VTPVEVMPVFPDFK EDAQKSISQHYSKPRVTPVEVMPVFPDFKM RVTPVEVMPVFPDFKMWINPCAQVIFDSDP R V T F K M 0 0 0 1 0 0 1 0 0 0 0 1 1 2 3 0 1 0 0 4 0 0 14 0 1603.832 Q8N7H5 Q8N7H5 199 212 PAF1 RNA polymerase II-associated factor 1 homolog yes yes 2 0.0019002 103.43 By MS/MS 3.5 0.5 1 1 2 17950000 0 0 17950000 15205 1614 15951 66646;66647 56229 56229 1 0 0 3237200 VTQDELK ERDARTLLAKNLPYKVTQDELKEVFEDAAE LAKNLPYKVTQDELKEVFEDAAEIRLVSKD K V T L K E 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 0 1 0 0 1 0 0 7 0 831.4338 P19338 P19338 404 410 NCL Nucleolin yes yes 2 0.01682 108.24 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 31360000 0 9649600 21711000 15206 604 15952 66648;66649;66650 56230;56231 56230 2 0 4113600 4188500 VTQDELKEVFEDAAEIR ERDARTLLAKNLPYKVTQDELKEVFEDAAE QDELKEVFEDAAEIRLVSKDGKSKGIAYIE K V T I R L 2 1 0 2 0 1 4 0 0 1 1 1 0 1 0 0 1 0 0 2 0 0 17 1 1990.9848 P19338 P19338 404 420 NCL Nucleolin yes yes 2;3 3.4345E-91 251.68 By MS/MS By MS/MS 2.62 1 2 4 4 3 5 8 227540000 0 83949000 143590000 15207 604 15953 66651;66652;66653;66654;66655;66656;66657;66658;66659;66660;66661;66662;66663 56232;56233;56234;56235;56236;56237;56238;56239;56240;56241;56242;56243;56244;56245 56234 14 0 36857000 30507000 VTQEEIK ______________________________ ______________________________ R V T I K K 0 0 0 0 0 1 2 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 7 0 845.44945 O00422 O00422 7 13 SAP18 Histone deacetylase complex subunit SAP18 yes yes 2 0.039108 84.244 By MS/MS 7 0 1 1 1239300 0 0 1239300 15208 120 15954 66664 56246 56246 1 0 0 219900 VTQEIVTER SFPVPKSLQEANAEKVTQEIVTERSVSSRQ EANAEKVTQEIVTERSVSSRQAQKVATPLP K V T E R S 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 2 0 0 2 0 0 9 0 1073.5717 Q14126 Q14126 902 910 DSG2 Desmoglein-2 yes yes 2 0.026994 78.149 By matching By MS/MS 2.5 0.5 1 1 1 1 6548500 0 1641200 4907300 15209 1282 15955 66665;66666 56247 56247 1 0 739050 951780 VTSIQDWVQK FDKSCAVAEYGVYVKVTSIQDWVQKTIAEN GVYVKVTSIQDWVQKTIAEN__________ K V T Q K T 0 0 0 1 0 2 0 0 0 1 0 1 0 0 0 1 1 1 0 2 0 0 10 0 1202.6295 P00738 P00738 392 401 HP Haptoglobin;Haptoglobin alpha chain;Haptoglobin beta chain yes yes 2 0.0023992 105.78 By MS/MS 5.75 3.83 1 1 1 1 4 459800000 459800000 0 0 15210 364 15956 66667;66668;66669;66670 56248;56249;56250;56251 56250 4 486380000 0 0 VTSVQIHGTSEER SLKDGLFHEFKKFGKVTSVQIHGTSEERYG GKVTSVQIHGTSEERYGLVFFRQQEDQEKA K V T E R Y 0 1 0 0 0 1 2 1 1 1 0 0 0 0 0 2 2 0 0 2 0 0 13 0 1441.7161 Q96T58 Q96T58 365 377 SPEN Msx2-interacting protein yes yes 2;3 6.1389E-05 90.653 By MS/MS 1.5 0.5 1 1 2 1446200 0 0 1446200 15211 1839 15957 66671;66672 56252;56253 56252 2 0 0 326800 VTSVVFHPSQDLVFSASPDATIR SSEQILATLKGHTKKVTSVVFHPSQDLVFS SQDLVFSASPDATIRIWSVPNASCVQVVRA K V T I R I 2 1 0 2 0 1 0 0 1 1 1 0 0 2 2 4 2 0 0 4 0 0 23 0 2472.2649 Q9UMS4 Q9UMS4 267 289 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3;4 8.4525E-221 311.92 By MS/MS By MS/MS 3.78 0.629 3 5 1 4 5 393730000 0 225210000 168520000 15212 2199 15958 66673;66674;66675;66676;66677;66678;66679;66680;66681 56254;56255;56256;56257;56258;56259;56260;56261;56262 56260 9 0 74812000 28431000 VTTLPGHIQAVYVQNVVK LQEPHHTLEAMLRPRVTTLPGHIQAVYVQN LPGHIQAVYVQNVVKLYASILQQKEQAGEA R V T V K L 1 0 1 0 0 2 0 1 1 1 1 1 0 0 1 0 2 0 1 5 0 0 18 0 1965.1047 O14617 O14617 511 528 AP3D1 AP-3 complex subunit delta-1 yes yes 3 0.00085517 71.354 By MS/MS 2 0 1 1 16058000 0 0 16058000 15213 139 15959 66682 56263 56263 1 0 0 3628700 VTTSLEALPTGTVLTDK PQKTRQSPQTLKRSRVTTSLEALPTGTVLT TSLEALPTGTVLTDKSGRQWKLKSFQTRDN R V T D K S 1 0 0 1 0 0 1 1 0 0 3 1 0 0 1 1 5 0 0 2 0 0 17 0 1744.9458 Q8IV63 Q8IV63 145 161 VRK3 Inactive serine/threonine-protein kinase VRK3 yes yes 2 8.7467E-06 120.84 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 15086000 0 3404100 11682000 15214 1569 15960 66683;66684;66685 56264;56265 56265 2 0 1129700 1823800 VTTVTEIGKDVIGLR SGACYSPEFKGQICRVTTVTEIGKDVIGLR VTTVTEIGKDVIGLRISPLQFR________ R V T L R I 0 1 0 1 0 0 1 2 0 2 1 1 0 0 0 0 3 0 0 3 0 0 15 1 1599.9196 P53621 P53621 1203 1217 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 3 0.01239 58.723 By MS/MS 2 0 1 1 2919700 0 2919700 0 15215 922 15961 66686 56266 56266 1 0 1314800 0 VTVDTGVIPASEEK KESQRKFEEETVKSKVTVDTGVIPASEEKA KVTVDTGVIPASEEKAETPTAAEDDNEGDK K V T E K A 1 0 0 1 0 0 2 1 0 1 0 1 0 0 1 1 2 0 0 3 0 0 14 0 1443.7457 O60841 O60841 285 298 EIF5B Eukaryotic translation initiation factor 5B yes yes 2 0.00020534 151.79 By MS/MS By MS/MS 2.17 1.07 2 2 1 1 2 4 85836000 0 14484000 71352000 15216 236 15962 66687;66688;66689;66690;66691;66692 56267;56268;56269;56270 56267 4 0 6774000 15334000 VTVDTGVIPASEEKAETPTAAEDDNEGDKK KESQRKFEEETVKSKVTVDTGVIPASEEKA ETPTAAEDDNEGDKKKKDKKKKKGEKEEKE K V T K K K 4 0 1 4 0 0 5 2 0 1 0 3 0 0 2 1 4 0 0 3 0 0 30 2 3115.4681 O60841 O60841 285 314 EIF5B Eukaryotic translation initiation factor 5B yes yes 4 1.7982E-33 119.14 By MS/MS By MS/MS 2 0 2 1 1 39876000 0 5954800 33921000 15217 236 15963 66693;66694 56271;56272 56272 2 0 2681500 7665500 VTVFDLK FTCDGNSVISPVGNRVTVFDLKNNKSDTLP VISPVGNRVTVFDLKNNKSDTLPLATRYNV R V T L K N 0 0 0 1 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 2 0 0 7 0 820.46945 Q15269 Q15269 37 43 PWP2 Periodic tryptophan protein 2 homolog yes yes 2 0.041621 81.784 By MS/MS 2 0 1 1 6882300 0 6882300 0 15218 1352 15964 66695 56273 56273 1 0 3099200 0 VTVLFAGQHIAK TFSVWYVPEVTGTHKVTVLFAGQHIAKSPF THKVTVLFAGQHIAKSPFEVYVDKSQGDAS K V T A K S 2 0 0 0 0 1 0 1 1 1 1 1 0 1 0 0 1 0 0 2 0 0 12 0 1282.7398 P21333 P21333 356 367 FLNA Filamin-A yes yes 2;3 0.00087 119.62 By MS/MS By MS/MS 2 1.07 3 2 1 1 5 2 48165000 0 21942000 26223000 15219 623 15965 66696;66697;66698;66699;66700;66701;66702 56274;56275;56276 56274 3 0 10416000 5697300 VTVMASLR PLPEYHVRIAGFDERVTVMASLRRPKRIII IAGFDERVTVMASLRRPKRIIIRGHDEREH R V T L R R 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 2 0 0 8 0 875.48987 P78527 P78527 3726 3733 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 7.9973E-06 154.35 By MS/MS By MS/MS 1 0 2 1 1 22924000 0 5527600 17396000 15220 1089 15966 66703;66704 56277;56278 56278 2 0 2701800 3748200 VTVNPGLLVPLDVK SRSLTGCWSAGTISKVTVNPGLLVPLDVKL KVTVNPGLLVPLDVKLDPAVQQLKNQEKEE K V T V K L 0 0 1 1 0 0 0 1 0 0 3 1 0 0 2 0 1 0 0 4 0 0 14 0 1462.8759 Q6KB66;CON__Q6KB66-1 Q6KB66 58 71 KRT80 Keratin, type II cytoskeletal 80 yes no 2 0.00098847 110.08 By MS/MS By matching 6.11 3.11 1 1 2 1 1 1 2 7 2 17641000 16462000 0 1178600 + 15221 93 15967 66705;66706;66707;66708;66709;66710;66711;66712;66713 56279;56280;56281 56279 3 16269000 0 1167000 VTWDGHSGSMAR GKKIGEEEIQKPEEKVTWDGHSGSMARTQQ EEKVTWDGHSGSMARTQQAAQANITLQEQI K V T A R T 1 1 0 1 0 0 0 2 1 0 0 0 1 0 0 2 1 1 0 1 0 0 12 0 1302.5775 Q15459 Q15459 500 511 SF3A1 Splicing factor 3A subunit 1 yes yes 3 0.024757 58.04 By matching By MS/MS 2 0 2 1 1 13183000 4657700 0 8525300 15222 1369 15968 66714;66715 56282 56282 1 5612000 0 1926600 VTYTPMAPGSYLISIK SKVKMDCQECPEGYRVTYTPMAPGSYLISI TYTPMAPGSYLISIKYGGPYHIGGSPFKAK R V T I K Y 1 0 0 0 0 0 0 1 0 2 1 1 1 0 2 2 2 0 2 1 0 0 16 0 1739.9168 P21333 P21333 2485 2500 FLNA Filamin-A yes yes 2 0.0085141 74.78 By matching By MS/MS By MS/MS 1.75 0.829 2 1 1 1 1 2 24905000 720980 3957800 20226000 15223 623 15969 66716;66717;66718;66719 56283;56284 56284 2 720980 1782300 4309300 VTYVVLDEADR DMLAANSGRVTNLRRVTYVVLDEADRMFDM NLRRVTYVVLDEADRMFDMGFEPQVMRIVD R V T D R M 1 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 3 0 0 11 0 1278.6456 Q7L014 Q7L014 523 533 DDX46 Probable ATP-dependent RNA helicase DDX46 yes yes 2 0.00032741 123.75 By matching By MS/MS 1.33 0.471 2 1 1 2 18268000 0 1677600 16590000 15224 1520 15970 66720;66721;66722 56285;56286 56286 1 0 819990 3690700 VVAEPVELAQEFR LSGYVELRYDDEVKRVVAEPVELAQEFRKF KRVVAEPVELAQEFRKFDLNSPWEAFPVYR R V V F R K 2 1 0 0 0 1 3 0 0 0 1 0 0 1 1 0 0 0 0 3 0 0 13 0 1485.7827 O75489 O75489 219 231 NDUFS3 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial yes yes 2 0.00010814 152.62 By MS/MS 7 0 1 1 8515400 0 0 8515400 15225 266 15971 66723 56287 56287 1 0 0 1511000 VVAEVYDQER KAIQALNGRWFAGRKVVAEVYDQERFDNSD FAGRKVVAEVYDQERFDNSDLSA_______ K V V E R F 1 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 10 0 1206.5881 Q9UHX1 Q9UHX1 542 551 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 5.5479E-17 183.65 By matching By MS/MS 2.5 1.12 1 1 1 1 2 2 44595000 0 28968000 15627000 15226 2158 15972 66724;66725;66726;66727 56288;56289 56289 2 0 13383000 2805100 VVAGVANALAHK FGKEFTPPVQAAYQKVVAGVANALAHKYH_ YQKVVAGVANALAHKYH_____________ K V V H K Y 4 0 1 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 3 0 0 12 0 1148.6666 P68871;P02042 P68871 134 145 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 2 4.5748E-05 147.29 By MS/MS 5.22 2.9 1 1 1 1 1 1 1 1 1 9 247840000 247840000 0 0 15227 1081 15973 66728;66729;66730;66731;66732;66733;66734;66735;66736 56290;56291;56292;56293;56294;56295;56296;56297;56298 56297 9 226660000 0 0 VVAGVANALAHKYH FGKEFTPPVQAAYQKVVAGVANALAHKYH_ KVVAGVANALAHKYH_______________ K V V Y H - 4 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 0 0 1 3 0 0 14 1 1448.7888 P68871;P02042 P68871 134 147 HBB;HBD Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta yes no 2;3 0.00014944 142.92 By MS/MS 7.8 3.43 1 2 2 5 57785000 57785000 0 0 15228 1081 15974 66737;66738;66739;66740;66741 56299;56300;56301;56302;56303 56302 5 69270000 0 0 VVAHLYAR EADYLSSHLTEGPHRVVAHLYARQLTLEQL LTEGPHRVVAHLYARQLTLEQLHAVEISAV R V V A R Q 2 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 8 0 927.52904 Q9BRJ7 Q9BRJ7 108 115 NUDT16L1 Protein syndesmos yes yes 2 0.0026486 107.74 By matching By MS/MS 7 0 2 1 1 11145000 0 2610700 8534200 15229 1890 15975 66742;66743 56304 56304 1 0 1499100 1514300 VVALSMSPVDDTFISGSLDK HDNKYIRYFPGHSKRVVALSMSPVDDTFIS MSPVDDTFISGSLDKTIRLWDLRSPNCQGL R V V D K T 1 0 0 3 0 0 0 1 0 1 2 1 1 1 1 4 1 0 0 3 0 0 20 0 2080.0398 Q6UXN9 Q6UXN9 110 129 WDR82 WD repeat-containing protein 82 yes yes 2 9.1952E-11 118.51 By matching By MS/MS 6 0 3 1 2 18087000 0 1216500 16871000 15230 1506 15976;15977 66744;66745;66746 56305;56306 56306 645 2 0 421110 2524000 VVAQGTGSTTDLEAALSIAQTYALSQL LAVCSHMGGKAWGSRVVAQGTGSTTDLEAA EAALSIAQTYALSQL_______________ R V V Q L - 5 0 0 1 0 3 1 2 0 1 4 0 0 0 0 3 4 0 1 2 0 0 27 0 2707.3916 Q5JTZ9 Q5JTZ9 959 985 AARS2 Alanine--tRNA ligase, mitochondrial yes yes 3 0.047148 20.482 By MS/MS 2 0 1 1 1900300 0 0 1900300 15231 1440 15978 66747 56307 56307 1 0 0 429430 VVAQSTNSEEIIEGEYNTVMLAIGR IKVEQIEAGTPGRLRVVAQSTNSEEIIEGE IIEGEYNTVMLAIGRDACTRKIGLETVGVK R V V G R D 2 1 2 0 0 1 4 2 0 3 1 0 1 0 0 2 2 0 1 3 0 0 25 0 2722.3484 Q16881 Q16881 419 443 TXNRD1 Thioredoxin reductase 1, cytoplasmic yes yes 3 0.00013935 57.922 By MS/MS 4 0 1 1 3090400 0 0 3090400 15232 1402 15979 66748 56308 56308 1 0 0 504760 VVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALR LCPKREGAQNEVEKRVVASLLTLMDGIGSE LGATNRPHALDAALRRPGRFDKEIEIGVPN R V V L R R 5 2 1 2 0 1 2 4 1 1 7 0 1 0 1 3 2 0 0 5 0 0 38 1 3872.083 Q8NB90 Q8NB90 473 510 SPATA5 Spermatogenesis-associated protein 5 yes yes 4;5 1.5428E-39 101.11 By MS/MS 2 0 2 2 8297700 0 0 8297700 15233 1624 15980 66749;66750 56309;56310 56309 2 0 0 1875100 VVDALGNAIDGK GAIVDVPVGEELLGRVVDALGNAIDGKGPI LGRVVDALGNAIDGKGPIGSKTRRRVGLKA R V V G K G 2 0 1 2 0 0 0 2 0 1 1 1 0 0 0 0 0 0 0 2 0 0 12 0 1170.6245 P25705 P25705 150 161 ATP5A1 ATP synthase subunit alpha, mitochondrial yes yes 2 0.009819 94.616 By MS/MS 4 0 1 1 21289000 0 21289000 0 15234 661 15981 66751 56311 56311 1 0 7065000 0 VVDALNQGLPR KESGAINTSLFVLGKVVDALNQGLPRVPYR VLGKVVDALNQGLPRVPYRDSKLTRLLQDS K V V P R V 1 1 1 1 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 2 0 0 11 0 1180.6564 Q14807 Q14807 307 317 KIF22 Kinesin-like protein KIF22 yes yes 2 0.00036462 120.87 By MS/MS 3 0 1 1 10646000 0 0 10646000 15235 1320 15982 66752 56312 56312 1 0 0 2064700 VVDDEIYYFR MKKFKGLKRFSLSAKVVDDEIYYFRKPIVP SLSAKVVDDEIYYFRKPIVPQKEPSPLLEK K V V F R K 0 1 0 2 0 0 1 0 0 1 0 0 0 1 0 0 0 0 2 2 0 0 10 0 1317.6241 Q86U86 Q86U86 1283 1292 PBRM1 Protein polybromo-1 yes yes 2 0.053013 72.038 By MS/MS 1 0 1 1 17077000 0 0 17077000 15236 1545 15983 66753 56313 56313 1 0 0 3679600 VVDEINQGMDPINER LYLMALQELNRCPFRVVDEINQGMDPINER VVDEINQGMDPINERRVFEMVVNTACKENT R V V E R R 0 1 2 2 0 1 2 1 0 2 0 0 1 0 1 0 0 0 0 2 0 0 15 0 1727.8148 Q8IY18 Q8IY18 1017 1031 SMC5 Structural maintenance of chromosomes protein 5 yes yes 2 0.00030837 148.13 By MS/MS 2 0 1 1 7757900 0 0 7757900 15237 1588 15984 66754 56314 56314 1 0 0 1753100 VVDLEGSLK AGKDGPSLLVVEQVRVVDLEGSLKVVYPSK VVEQVRVVDLEGSLKVVYPSKADLATAPPH R V V L K V 0 0 0 1 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 2 0 0 9 0 958.53351 Q8N1G4 Q8N1G4 555 563 LRRC47 Leucine-rich repeat-containing protein 47 yes yes 2 0.00056558 117.04 By MS/MS By MS/MS 3 0 2 1 1 32278000 0 7952600 24325000 15238 1600 15985 66755;66756 56315;56316 56315 2 0 3390200 4717900 VVDLLAPYAK MEMSVEQEILVTGIKVVDLLAPYAKGGKIG VTGIKVVDLLAPYAKGGKIGLFGGAGVGKT K V V A K G 2 0 0 1 0 0 0 0 0 0 2 1 0 0 1 0 0 0 1 2 0 0 10 0 1087.6277 P06576 P06576 189 198 ATP5B ATP synthase subunit beta, mitochondrial yes yes 2 0.025017 80.165 By matching By MS/MS 7.17 2.19 1 2 1 2 3 3 18629000 0 9156100 9472500 15239 444 15986 66757;66758;66759;66760;66761;66762 56317;56318 56317 2 0 6536500 7658700 VVDLMAHMASK KLISWYDNEFGYSNRVVDLMAHMASKE___ YSNRVVDLMAHMASKE______________ R V V S K E 2 0 0 1 0 0 0 0 1 0 1 1 2 0 0 1 0 0 0 2 0 0 11 0 1200.5995 P04406 P04406 324 334 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2;3 0.0013867 110.53 By MS/MS By MS/MS 8.56 1.64 2 1 2 4 5 4 51994000 27135000 0 24860000 15240 415 15987 66763;66764;66765;66766;66767;66768;66769;66770;66771 56319;56320;56321 56321 3 33313000 0 15173000 VVDLMAHMASKE KLISWYDNEFGYSNRVVDLMAHMASKE___ SNRVVDLMAHMASKE_______________ R V V K E - 2 0 0 1 0 0 1 0 1 0 1 1 2 0 0 1 0 0 0 2 0 0 12 1 1329.6421 P04406 P04406 324 335 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 2;3 0.020564 91.549 By MS/MS By MS/MS By MS/MS 7 1.73 6 2 3 2 3 95580000 29933000 28668000 36980000 15241 415 15988 66772;66773;66774;66775;66776;66777;66778;66779 56322;56323;56324;56325;56326 56323 5 41278000 9923700 11706000 VVDLQAMLEK AHHALLQKLKEEKSRVVDLQAMLEKVQQQA EEKSRVVDLQAMLEKVQQQALHSQQQLEAE R V V E K V 1 0 0 1 0 1 1 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 10 0 1144.6162 O95613 O95613 2801 2810 PCNT Pericentrin yes yes 2 0.020459 82.749 By MS/MS 1 0 1 1 1680000 0 1680000 0 15242 331 15989 66780 56327 56327 1 0 821150 0 VVDNSALGNSPYHR TTGSLSAIQKMTRVRVVDNSALGNSPYHRA RVVDNSALGNSPYHRAPRCIHVYKKNGVGK R V V H R A 1 1 2 1 0 0 0 1 1 0 1 0 0 0 1 2 0 0 1 2 0 0 14 0 1527.743 Q6P1L8 Q6P1L8 40 53 MRPL14 39S ribosomal protein L14, mitochondrial yes yes 3 0.068934 35.037 By MS/MS 9 0 1 1 2231600 0 2231600 0 15243 1487 15990 66781 56328 56328 1 0 1786900 0 VVDPFSKK NKRLTKGGKKGAKKKVVDPFSKKDWYDVKA KKGAKKKVVDPFSKKDWYDVKAPAMFNIRN K V V K K D 0 0 0 1 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 2 0 0 8 1 918.51747 P61247 P61247 21 28 RPS3A 40S ribosomal protein S3a yes yes 2 0.032976 85.212 By matching By MS/MS 5.5 0.5 1 1 1 1 15355000 2251600 13104000 0 15244 988 15991 66782;66783 56329 56329 1 1803800 4536100 0 VVDRDSEEAEIIR DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY IKVVDRDSEEAEIIRKYVKNTHATTHNAYD K V V I R K 1 2 0 2 0 0 3 0 0 2 0 0 0 0 0 1 0 0 0 2 0 0 13 1 1529.7686 P09874 P09874 803 815 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.0798E-194 308.91 By MS/MS By MS/MS 3.07 1.91 3 5 2 2 1 2 3 12 717180000 0 87777000 629410000 15245 492 15992 66784;66785;66786;66787;66788;66789;66790;66791;66792;66793;66794;66795;66796;66797;66798 56330;56331;56332;56333;56334;56335;56336;56337;56338;56339;56340;56341;56342 56336 12 0 39677000 137440000 VVDRDSEEAEIIRK DPIDVNYEKLKTDIKVVDRDSEEAEIIRKY KVVDRDSEEAEIIRKYVKNTHATTHNAYDL K V V R K Y 1 2 0 2 0 0 3 0 0 2 0 1 0 0 0 1 0 0 0 2 0 0 14 2 1657.8635 P09874 P09874 803 816 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3;4 6.0292E-36 150.49 By MS/MS By MS/MS 1.67 0.471 3 6 2 7 221020000 0 71242000 149780000 15246 492 15993 66799;66800;66801;66802;66803;66804;66805;66806;66807 56343;56344;56345;56346;56347;56348 56348 6 0 32081000 33390000 VVDSMDALDK KRQRLPMPSPERLDKVVDSMDALDKVVQER ERLDKVVDSMDALDKVVQEREDALRLLQTG K V V D K V 1 0 0 3 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 2 0 0 10 0 1091.5169 Q9HD33 Q9HD33 135 144 MRPL47 39S ribosomal protein L47, mitochondrial yes yes 2 0.055671 71.349 By MS/MS 7 0 1 1 13115000 0 0 13115000 15247 2015 15994 66808 56349 56349 1 0 0 2327200 VVDYSQFQESDDADEDYGR ______________________________ SQFQESDDADEDYGRDSGPPTKKIRSSPRE K V V G R D 1 1 0 5 0 2 2 1 0 0 0 0 0 1 0 2 0 0 2 2 0 0 19 0 2236.9033 Q9H1E3 Q9H1E3 10 28 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 yes yes 2 3.3035E-41 215.87 By MS/MS 6.5 0.5 1 1 2 12989000 0 0 12989000 15248 1968 15995 66809;66810 56350 56350 1 0 0 2017700 VVEATNSVTAVR SNQQLEDLINQGREKVVEATNSVTAVRIQP REKVVEATNSVTAVRIQPLEDIISAVWKEN K V V V R I 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 2 0 0 4 0 0 12 0 1244.6725 P46100 P46100 2335 2346 ATRX Transcriptional regulator ATRX yes yes 2 1.4709E-05 155.15 By MS/MS By MS/MS 1 0 2 1 1 14242000 0 2986000 11255000 15249 825 15996 66811;66812 56351;56352 56352 2 0 1459500 2425200 VVEGTPLIDGR WFLIQVLFYLLPIGKVVEGTPLIDGRRLKY PIGKVVEGTPLIDGRRLKYRLNGFYAFILT K V V G R R 0 1 0 1 0 0 1 2 0 1 1 0 0 0 1 0 1 0 0 2 0 0 11 0 1154.6295 Q14739 Q14739 280 290 LBR Lamin-B receptor yes yes 2 0.036083 76.943 By MS/MS 4 0 1 1 0 0 0 0 15250 1318 15997 66813 56353 56353 1 0 0 0 VVEIVDEK TTDISLIFAALKDSKVVEIVDEKVRRREEP AALKDSKVVEIVDEKVRRREEPEKWPLPPI K V V E K V 0 0 0 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 3 0 0 8 0 929.50696 Q6PKG0 Q6PKG0 466 473 LARP1 La-related protein 1 yes yes 2 0.037345 83.206 By MS/MS 2 0 1 1 0 0 0 0 15251 1497 15998 66814 56354 56354 1 0 0 0 VVESGGPEILK SFMSQLLSSNNFLKKVVESGGPEILKGLEE FLKKVVESGGPEILKGLEERLLETVLGYIS K V V L K G 0 0 0 0 0 0 2 2 0 1 1 1 0 0 1 1 0 0 0 2 0 0 11 0 1126.6234 Q9H583 Q9H583 1534 1544 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.027118 80.231 By MS/MS 1 0 1 1 11839000 0 11839000 0 15252 1984 15999 66815 56355 56355 1 0 5786600 0 VVEVLAGHGHLYSR CLDTAVENMPSLKMKVVEVLAGHGHLYSRI KVVEVLAGHGHLYSRIPGLLSPHPLLQLSY K V V S R I 1 1 0 0 0 0 1 2 2 0 2 0 0 0 0 1 0 0 1 3 0 0 14 0 1535.8209 P49327 P49327 1242 1255 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 3 0.0016488 82.55 By MS/MS 1 0 1 1 17709000 0 0 17709000 15253 853 16000 66816 56356 56356 1 0 0 3815600 VVFAELACR HTIQICKLSGGQKARVVFAELACREPDVLI GGQKARVVFAELACREPDVLILDEPTNNLD R V V C R E 2 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 2 0 0 9 0 1063.5485 Q8NE71 Q8NE71 751 759 ABCF1 ATP-binding cassette sub-family F member 1 yes yes 2 0.00055135 126.28 By MS/MS 1.5 0.5 1 1 2 10410000 0 0 10410000 15254 1638 16001 66817;66818 56357 56357 1 0 0 2336900 VVFDEGLR V V L R 0 1 0 1 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 2 0 0 8 0 933.49198 REV__B2C4J3 yes yes 2 0.0072732 97.071 By MS/MS By MS/MS By MS/MS 4 3.74 4 2 2 3 4 5 2 832150000 221100000 497880000 113180000 + 15255 2323 16002 66819;66820;66821;66822;66823;66824;66825;66826;66827;66828;66829 56358;56359;56360;56361;56362 56362 5 225400000 240350000 32861000 VVFEQTK IGEKLDEREAGITEKVVFEQTKVIADNVKD REAGITEKVVFEQTKVIADNVKDWSKVVLA K V V T K V 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 7 0 849.45962 P60174 P60174 180 186 TPI1 Triosephosphate isomerase yes yes 2 0.01682 108.24 By MS/MS 8.5 1.5 1 1 2 3390700 3390700 0 0 15256 962 16003 66830;66831 56363;56364 56363 2 7097300 0 0 VVFQEFR VLEGIRICRQGFPNRVVFQEFRQRYEILTP CRQGFPNRVVFQEFRQRYEILTPNSIPKGF R V V F R Q 0 1 0 0 0 1 1 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 7 0 923.4865 P35579 P35579 712 718 MYH9 Myosin-9 yes yes 2 3.0981E-07 164.78 By matching By MS/MS By MS/MS 3.17 3.13 2 2 1 1 2 2 2 351140000 6801100 339560000 4773300 15257 752 16004 66832;66833;66834;66835;66836;66837 56365;56366;56367;56368;56369 56366 5 7246600 164920000 6984300 VVFWLHDSFPKPR VRGPEQCDIQHFVEKVVFWLHDSFPKPRRV EKVVFWLHDSFPKPRRVCKEPPYKVEESGY K V V P R R 0 1 0 1 0 0 0 0 1 0 1 1 0 2 2 1 0 1 0 2 0 0 13 1 1626.8671 Q03111 Q03111 51 63 MLLT1 Protein ENL yes yes 3;4 0.00089409 100.93 By MS/MS 3 0 2 2 10677000 0 0 10677000 15258 1154 16005 66838;66839 56370;56371 56371 2 0 0 2070900 VVGAMQLYSVDR QKWLLLTGISAQQNRVVGAMQLYSVDRKVS QNRVVGAMQLYSVDRKVSQPIEGHAASFAQ R V V D R K 1 1 0 1 0 1 0 1 0 0 1 0 1 0 0 1 0 0 1 3 0 0 12 0 1336.6809 Q00610;P53675 Q00610 177 188 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 3.0167E-25 198.72 By matching By MS/MS By MS/MS 2.17 1.46 3 1 1 1 1 2 3 131510000 2630600 18056000 110820000 15259 1125 16006 66840;66841;66842;66843;66844;66845 56372;56373;56374;56375 56374 4 2630600 8687800 23651000 VVGAMQLYSVDRK QKWLLLTGISAQQNRVVGAMQLYSVDRKVS NRVVGAMQLYSVDRKVSQPIEGHAASFAQF R V V R K V 1 1 0 1 0 1 0 1 0 0 1 1 1 0 0 1 0 0 1 3 0 0 13 1 1464.7759 Q00610;P53675 Q00610 177 189 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2;3 0.00046323 131.82 By MS/MS By MS/MS 1.4 0.49 3 2 1 4 52311000 0 6520900 45790000 15260 1125 16007 66846;66847;66848;66849;66850 56376;56377;56378;56379 56377 4 0 2936400 9929300 VVGAVIDQGLITR KRRRVLNRERRLRHRVVGAVIDQGLITRHH HRVVGAVIDQGLITRHHLKKRASSARANIT R V V T R H 1 1 0 1 0 1 0 2 0 2 1 0 0 0 0 0 1 0 0 3 0 0 13 0 1339.7823 E9PRG8 E9PRG8 36 48 C11orf98 Uncharacterized protein C11orf98 yes yes 2 2.7115E-26 206.48 By MS/MS By MS/MS 8 1.41 1 2 2 2 4 3 79732000 0 46344000 33388000 15261 103 16008 66851;66852;66853;66854;66855;66856;66857 56380;56381;56382;56383;56384;56385 56381 5 0 30064000 10077000 VVGTIDQLVK PSSLSDAVPQRADHRVVGTIDQLVKRVIEG RADHRVVGTIDQLVKRVIEGSLSPKERTLL R V V V K R 0 0 0 1 0 1 0 1 0 1 1 1 0 0 0 0 1 0 0 3 0 0 10 0 1070.6336 Q8IX01 Q8IX01 586 595 SUGP2 SURP and G-patch domain-containing protein 2 yes yes 2 0.034544 76.827 By MS/MS By matching 2 0.816 1 1 1 2 1 9284000 0 5780500 3503400 15262 1578 16009 66858;66859;66860 56386 56386 1 0 2629400 679500 VVHIIQAR LSLDINKLPGEKLGRVVHIIQAREPSLRDS PGEKLGRVVHIIQAREPSLRDSNPEEIEID R V V A R E 1 1 0 0 0 1 0 0 1 2 0 0 0 0 0 0 0 0 0 2 0 0 8 0 934.57123 P25440 P25440 665 672 BRD2 Bromodomain-containing protein 2 yes yes 2 0.023759 81.381 By MS/MS 2.5 0.5 1 1 2 8755600 0 0 8755600 15263 658 16010 66861;66862 56387 56387 1 0 0 1874900 VVHIMDFQR QGPRHMQKGRVETSRVVHIMDFQRGKNLRY RVETSRVVHIMDFQRGKNLRYQLLQLVEPF R V V Q R G 0 1 0 1 0 1 0 0 1 1 0 0 1 1 0 0 0 0 0 2 0 0 9 0 1143.5859 P43243 P43243 399 407 MATR3 Matrin-3 yes yes 2 2.4792E-07 159.04 By MS/MS 1.5 0.5 1 1 2 103690000 0 0 103690000 15264 812 16011 66863;66864 56388;56389 56389 2 0 0 23146000 VVHLLNDQHLGVVTAATSLITTLAQK RTSPDLVPMGDWTSRVVHLLNDQHLGVVTA VVTAATSLITTLAQKNPEEFKTSVSLAVSR R V V Q K N 3 0 1 1 0 2 0 1 2 1 5 1 0 0 0 1 4 0 0 4 0 0 26 0 2741.544 O94973 O94973 192 217 AP2A2 AP-2 complex subunit alpha-2 yes yes 4 1.7712E-12 91.114 By MS/MS 2 0 1 1 4742500 0 0 4742500 15265 306 16012 66865 56390 56390 1 0 0 1071700 VVHLSLRPIFLQPGR QAVRACILCVHPRTRVVHLSLRPIFLQPGR VVHLSLRPIFLQPGRPLTRLSCQNLGAVLD R V V G R P 0 2 0 0 0 1 0 1 1 1 3 0 0 1 2 1 0 0 0 2 0 0 15 1 1731.0308 Q14690 Q14690 340 354 PDCD11 Protein RRP5 homolog yes yes 4 0.0025345 73.415 By MS/MS 1 0 1 1 3037100 0 0 3037100 15266 1314 16013 66866 56391 56391 1 0 0 654380 VVIGMDVAASEFFR ELLKTAIGKAGYTDKVVIGMDVAASEFFRS KVVIGMDVAASEFFRSGKYDLDFKSPDDPS K V V F R S 2 1 0 1 0 0 1 1 0 1 0 0 1 2 0 1 0 0 0 3 0 0 14 0 1539.7755 P06733 P06733 240 253 ENO1 Alpha-enolase yes yes 2 0.0075703 71.555 By MS/MS 5 0 1 1 0 0 0 0 15267 448 16014 66867 56392 56392 1 0 0 0 VVIIGAGKPAAVVLQTK ADPEGHFETPIWIERVVIIGAGKPAAVVLQ IIGAGKPAAVVLQTKGSPESRLSFQHDPET R V V T K G 3 0 0 0 0 1 0 2 0 2 1 2 0 0 1 0 1 0 0 4 0 0 17 1 1663.0396 Q14697 Q14697 892 908 GANAB Neutral alpha-glucosidase AB yes yes 3 0.00070364 81.346 By MS/MS 2 0 1 1 7565200 0 0 7565200 15268 1317 16015 66868 56393 56393 1 0 0 1709600 VVIQEMLK YHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ DAGNSDRVVIQEMLKTVAQSQQLETNSQRD R V V L K T 0 0 0 0 0 1 1 0 0 1 1 1 1 0 0 0 0 0 0 2 0 0 8 0 958.55214 P40938 P40938 106 113 RFC3 Replication factor C subunit 3 yes yes 2 0.0092479 94.662 By MS/MS 5 0 1 1 20398000 0 0 20398000 15269 788 16016 66869 56394 56394 1 0 0 2845200 VVIQSNDDIASR MMDDLELIGLDYLWRVVIQSNDDIASRAID LWRVVIQSNDDIASRAIDLLKEIYTNLGPR R V V S R A 1 1 1 2 0 1 0 0 0 2 0 0 0 0 0 2 0 0 0 2 0 0 12 0 1315.6732 Q93008 Q93008 777 788 USP9X Probable ubiquitin carboxyl-terminal hydrolase FAF-X yes yes 2 9.7539E-05 140.17 By MS/MS By matching 1.5 0.5 1 1 1 1 5945300 0 3186600 2758700 15270 1737 16017 66870;66871 56395 56395 1 0 1557600 623410 VVIVDPETNKEMSVQEAYKK KQVQTSQKNTLRKRRVVIVDPETNKEMSVQ PETNKEMSVQEAYKKGLIDYETFKELCEQE R V V K K G 1 0 1 1 0 1 3 0 0 1 0 3 1 0 1 1 1 0 1 4 0 0 20 2 2306.1828 P15924 P15924 2466 2485 DSP Desmoplakin yes yes 3;4 7.0807E-06 90.972 By MS/MS By MS/MS 7 3.54 1 1 1 1 3 1 16743000 10303000 0 6440400 15271 572 16018 66872;66873;66874;66875 56396;56397 56397 2 8849200 0 1387700 VVLAYEPVWAIGTGK EQTKVIADNVKDWSKVVLAYEPVWAIGTGK VVLAYEPVWAIGTGKTATPQQAQEVHEKLR K V V G K T 2 0 0 0 0 0 1 2 0 1 1 1 0 0 1 0 1 1 1 3 0 0 15 0 1601.8817 P60174 P60174 198 212 TPI1 Triosephosphate isomerase yes yes 2;3 7.2514E-09 130.01 By MS/MS By MS/MS By MS/MS 7.23 2.26 1 3 3 2 2 2 4 5 4 195850000 14754000 29489000 151610000 15272 962 16019 66876;66877;66878;66879;66880;66881;66882;66883;66884;66885;66886;66887;66888 56398;56399;56400;56401;56402;56403;56404;56405;56406;56407;56408;56409;56410;56411 56402 14 16915000 16798000 29047000 VVLGEFGVR ______________________________ EEMRSRVVLGEFGVRNVHTTDFPGNYSGYD R V V V R N 0 1 0 0 0 0 1 2 0 0 1 0 0 1 0 0 0 0 0 3 0 0 9 0 974.55492 O15160 O15160 14 22 POLR1C DNA-directed RNA polymerases I and III subunit RPAC1 yes yes 2 0.029549 85.064 By MS/MS 5 0 1 1 0 0 0 0 15273 171 16020 66889 56412 56412 1 0 0 0 VVLIGDSGVGK ______________________________ YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE K V V G K S 0 0 0 1 0 0 0 3 0 1 1 1 0 0 0 1 0 0 0 3 0 0 11 0 1042.6023 Q15907;P62491 Q15907 14 24 RAB11B;RAB11A Ras-related protein Rab-11B;Ras-related protein Rab-11A yes no 2 0.0029934 106.42 By MS/MS By MS/MS 8.5 1.5 2 2 2 2 26353000 0 7823000 18530000 15274 1027 16021 66890;66891;66892;66893 56413;56414;56415 56414 3 0 10840000 11813000 VVLIGGKPDR TIKLFQECCPHSTDRVVLIGGKPDRVVECI HSTDRVVLIGGKPDRVVECIKIILDLISES R V V D R V 0 1 0 1 0 0 0 2 0 1 1 1 0 0 1 0 0 0 0 2 0 0 10 1 1052.6342 P61978 P61978 192 201 HNRNPK Heterogeneous nuclear ribonucleoprotein K yes yes 2 0.0032688 126.41 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 2 4 140210000 0 59511000 80699000 15275 1002 16022 66894;66895;66896;66897;66898;66899 56416;56417;56418 56416 2 0 20040000 13494000 VVLLTEVDK AQSQQLETNSQRDFKVVLLTEVDKLTKDAQ SQRDFKVVLLTEVDKLTKDAQHALRRTMEK K V V D K L 0 0 0 1 0 0 1 0 0 0 2 1 0 0 0 0 1 0 0 3 0 0 9 0 1014.5961 P40938 P40938 131 139 RFC3 Replication factor C subunit 3 yes yes 2 0.030726 77.072 By MS/MS 5 0 1 1 13244000 0 0 13244000 15276 788 16023 66900 56419 56419 1 0 0 1847300 VVLLTEVDKLTK AQSQQLETNSQRDFKVVLLTEVDKLTKDAQ DFKVVLLTEVDKLTKDAQHALRRTMEKYMS K V V T K D 0 0 0 1 0 0 1 0 0 0 3 2 0 0 0 0 2 0 0 3 0 0 12 1 1356.8228 P40938 P40938 131 142 RFC3 Replication factor C subunit 3 yes yes 3 0.0021957 95.018 By MS/MS By matching 6 0 2 1 1 4656700 0 3626900 1029800 15277 788 16024 66901;66902 56420 56420 1 0 1255500 154070 VVLLTGETSTDLK YMDWYEKFQDRLNKKVVLLTGETSTDLKLL KKVVLLTGETSTDLKLLGKGNIIISTPEKW K V V L K L 0 0 0 1 0 0 1 1 0 0 3 1 0 0 0 1 3 0 0 2 0 0 13 0 1374.7606 O75643 O75643 1405 1417 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 5.3692E-05 157.78 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 91639000 0 34273000 57366000 15278 277 16025 66903;66904;66905 56421;56422;56423 56421 3 0 16752000 12405000 VVLPIEAPIR FLEPGDLRLLDVDNRVVLPIEAPIRMMITS DVDNRVVLPIEAPIRMMITSQDVLHSWAVP R V V I R M 1 1 0 0 0 0 1 0 0 2 1 0 0 0 2 0 0 0 0 2 0 0 10 0 1105.6859 P00403 P00403 142 151 MT-CO2 Cytochrome c oxidase subunit 2 yes yes 2 0.00011152 145.63 By matching By MS/MS By MS/MS 7.25 0.433 3 1 1 2 1 35311000 541130 9009900 25760000 15279 359 16026 66906;66907;66908;66909 56424;56425;56426 56426 3 1166300 4699900 4571000 VVLSLHHPPDR LAQSDMAKRVANLLRVVLSLHHPPDRTSDS NLLRVVLSLHHPPDRTSDSTPDPQRVPLRL R V V D R T 0 1 0 1 0 0 0 0 2 0 2 0 0 0 2 1 0 0 0 2 0 0 11 0 1268.699 P52948 P52948 1757 1767 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 yes yes 3 0.013209 68.536 By MS/MS 2 0 1 1 5172600 0 0 5172600 15280 916 16027 66910 56427 56427 1 0 0 1168900 VVLSVSSGGQHTVLLVK AWSPVEMMGKQLENRVVLSVSSGGQHTVLL LSVSSGGQHTVLLVKDKEQS__________ R V V V K D 0 0 0 0 0 1 0 2 1 0 3 1 0 0 0 3 1 0 0 5 0 0 17 0 1722.004 P18754 P18754 400 416 RCC1 Regulator of chromosome condensation yes yes 2;3 2.2361E-13 178.15 By MS/MS By MS/MS 4.6 1.36 1 1 2 4 1 1 2 8 235440000 0 83687000 151750000 15281 599 16028 66911;66912;66913;66914;66915;66916;66917;66918;66919;66920 56428;56429;56430;56431;56432;56433;56434;56435 56429 8 0 21572000 22956000 VVLVLAGR ______________________________ KFMKPGKVVLVLAGRYSGRKAVIVKNIDDG K V V G R Y 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 3 0 0 8 0 825.54362 P61353 P61353 10 17 RPL27 60S ribosomal protein L27 yes yes 2 0.0011912 119.22 By MS/MS By MS/MS 7.3 1.95 1 1 2 1 2 1 2 5 5 245930000 0 33573000 212350000 15282 993 16029 66921;66922;66923;66924;66925;66926;66927;66928;66929;66930 56436;56437;56438;56439;56440;56441;56442;56443;56444 56440 9 0 29737000 48623000 VVLVNNILQNAQER DLDPYVKKLLNARRRVVLVNNILQNAQERL RVVLVNNILQNAQERLRRLNHSVAKETARR R V V E R L 1 1 3 0 0 2 1 0 0 1 2 0 0 0 0 0 0 0 0 3 0 0 14 0 1608.8948 O95295 O95295 92 105 SNAPIN SNARE-associated protein Snapin yes yes 2 0.0014031 107.06 By MS/MS 8 0 1 1 1588400 0 1588400 0 15283 318 16030 66931 56445 56445 1 0 722690 0 VVLYVLNR PSREGLKQVSTLGERVVLYVLNRIIYRKQE VSTLGERVVLYVLNRIIYRKQEMERNEIPF R V V N R I 0 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 3 0 0 8 0 974.5913 Q9Y6X4 Q9Y6X4 114 121 FAM169A Soluble lamin-associated protein of 75 kDa yes yes 2 6.9883E-05 149.06 By MS/MS 2.5 0.5 1 1 2 10203000 0 0 10203000 15284 2319 16031 66932;66933 56446 56446 1 0 0 2194200 VVNGKVEYFLK AEPEEFVVEKVLDRRVVNGKVEYFLKWKGF LDRRVVNGKVEYFLKWKGFTDADNTWEPEE R V V L K W 0 0 1 0 0 0 1 1 0 0 1 2 0 1 0 0 0 0 1 3 0 0 11 1 1294.7285 Q13185 Q13185 40 50 CBX3 Chromobox protein homolog 3 yes yes 2;3 0.020936 107.15 By MS/MS By matching 7 0 3 2 1 20042000 0 17395000 2647300 15285 1228 16032 66934;66935;66936 56447;56448 56448 2 0 9988400 469740 VVNHSPQPQNVVFDVQIPK STITSRVANTVIQTKVVNHSPQPQNVVFDV SPQPQNVVFDVQIPKGAFISNFSMTVDGTT K V V P K G 0 0 2 1 0 3 0 0 1 1 0 1 0 1 3 1 0 0 0 5 0 0 19 0 2144.1378 CON__Q9TRI1 CON__Q9TRI1 94 112 yes yes 3 0.01432 44.238 By matching By MS/MS By MS/MS 6.44 2.71 1 1 2 1 2 1 1 1 5 3 30639000 2892400 15366000 12380000 + 15286 99 16033 66937;66938;66939;66940;66941;66942;66943;66944;66945 56449;56450;56451;56452;56453;56454 56449 6 2892400 23759000 1962800 VVNLGVLAQK RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL PQQSKVVNLGVLAQKSDFCLKLEEGLVNNK K V V Q K S 1 0 1 0 0 1 0 1 0 0 2 1 0 0 0 0 0 0 0 3 0 0 10 0 1039.639 Q8NI36 Q8NI36 815 824 WDR36 WD repeat-containing protein 36 yes yes 2 0.00047348 136.16 By matching By MS/MS By MS/MS 1.4 0.49 3 2 1 2 2 33994000 1151300 17723000 15120000 15287 1648 16034 66946;66947;66948;66949;66950 56455;56456;56457;56458 56456 4 1151300 8119700 3298500 VVNMNQQSDTADLLGGYKPVDHK STIQYLAHITGHRLRVVNMNQQSDTADLLG DTADLLGGYKPVDHKLIWLPLREAFEELFA R V V H K L 1 0 2 3 0 2 0 2 1 0 2 2 1 0 1 1 1 0 1 3 0 0 23 1 2528.2329 Q9NU22 Q9NU22 700 722 MDN1 Midasin yes yes 4 0.0081707 40.723 By MS/MS 1 0 1 1 2989800 0 2989800 0 15288 2056 16035 66951 56459 56459 1 0 1461400 0 VVNPLFEK VAPAPAVVKKQEAKKVVNPLFEKRPKNFGI KKQEAKKVVNPLFEKRPKNFGIGQDIQPKR K V V E K R 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 0 0 0 0 2 0 0 8 0 944.53312 P62424 P62424 27 34 RPL7A 60S ribosomal protein L7a yes yes 2 0.0085361 95.531 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 340120000 0 125370000 214750000 15289 1026 16036 66952;66953;66954;66955 56460;56461;56462 56460 3 0 44441000 32257000 VVNQLLTEMDGLEAR LCPRRSDRETGASVRVVNQLLTEMDGLEAR VVNQLLTEMDGLEARQQVFIMAATNRPDII R V V A R Q 1 1 1 1 0 1 2 1 0 0 3 0 1 0 0 0 1 0 0 2 0 0 15 0 1686.8611 O15381 O15381 701 715 NVL Nuclear valosin-containing protein-like yes yes 2 0.0002874 126.12 By MS/MS 2 0 1 1 2524100 0 2524100 0 15290 180 16037 66956 56463 56463 1 0 1136600 0 VVNVANVGAVPSGQDNIHR IAAPQNFTPSVIFQKVVNVANVGAVPSGQD ANVGAVPSGQDNIHRFAAKTVHSGSLMLVT K V V H R F 2 1 3 1 0 1 0 2 1 1 0 0 0 0 1 1 0 0 0 5 0 0 19 0 1945.013 O00203 O00203 1026 1044 AP3B1 AP-3 complex subunit beta-1 yes yes 3 1.8324E-09 140.26 By MS/MS By MS/MS 2.6 1.36 1 2 1 1 1 4 80017000 0 4395600 75621000 15291 111 16038 66957;66958;66959;66960;66961 56464;56465 56465 2 0 1979400 15992000 VVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSR QLCLEAYYDNTIFHRVVPGFIVQGGDPTGT ESIYGAPFKDEFHSRLRFNRRGLVAMANAG R V V S R L 1 1 0 2 0 1 2 8 1 2 0 1 0 3 3 3 2 0 1 3 0 0 34 1 3464.6637 Q6UX04 Q6UX04 57 90 CWC27 Peptidyl-prolyl cis-trans isomerase CWC27 homolog yes yes 4 4.5906E-21 83.559 By MS/MS 3.5 0.5 1 1 2 21222000 0 0 21222000 15292 1505 16039 66962;66963 56466 56466 1 0 0 3812500 VVPIASLTPYQSK AGPSLSHTSGGTQSKVVPIASLTPYQSKWT SKVVPIASLTPYQSKWTICARVTNKSQIRT K V V S K W 1 0 0 0 0 1 0 0 0 1 1 1 0 0 2 2 1 0 1 2 0 0 13 0 1401.7868 P27694 P27694 184 196 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2 3.7457E-07 164.97 By MS/MS By MS/MS 3.71 1.03 1 2 2 2 4 3 97417000 0 46796000 50621000 15293 679 16040 66964;66965;66966;66967;66968;66969;66970 56467;56468;56469;56470;56471 56468 5 0 17018000 9212700 VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGR SQAPGQPGASQWGSRVVPNAANGWAGQPPP AGQAIGGYGPPPAGRGAPPPPPPFTSYIVS R V V G R G 6 1 2 0 0 5 0 10 0 1 0 0 1 0 9 0 1 3 2 3 0 0 44 0 4439.1447 Q96EP5 Q96EP5 210 253 DAZAP1 DAZ-associated protein 1 yes yes 4 0.00014647 27.01 By MS/MS 5.5 0.5 1 1 2 4595700 0 4595700 0 15294 1776 16041 66971;66972 56472;56473 56472 2 0 1339800 0 VVPSDLYPLVLGFLR ______________________________ VVPSDLYPLVLGFLRDNQLSEVANKFAKAT R V V L R D 0 1 0 1 0 0 0 1 0 0 4 0 0 1 2 1 0 0 1 3 0 0 15 0 1686.9709 Q14978 Q14978 9 23 NOLC1 Nucleolar and coiled-body phosphoprotein 1 yes yes 2;3 7.6839E-05 156.12 By MS/MS By MS/MS 2.83 1.82 2 5 2 2 1 3 9 280700000 0 2638100 278060000 15295 1326 16042 66973;66974;66975;66976;66977;66978;66979;66980;66981;66982;66983;66984 56474;56475;56476;56477;56478;56479;56480;56481;56482;56483;56484;56485;56486;56487;56488 56480 15 0 1188000 59928000 VVPSFLPVDQGGSLVGR MLHPWNNEGAPPEDKVVPSFLPVDQGGSLV PSFLPVDQGGSLVGRNGVGGMAKEATMKGS K V V G R N 0 1 0 1 0 1 0 3 0 0 2 0 0 1 2 2 0 0 0 4 0 0 17 0 1725.9414 Q14126 Q14126 668 684 DSG2 Desmoglein-2 yes yes 2 0.00010757 98.902 By MS/MS By MS/MS 5.33 2.62 1 1 1 2 1 8290300 0 3947800 4342500 15296 1282 16043 66985;66986;66987 56489;56490;56491 56489 3 0 1310100 1387200 VVQALDPFNSR VVYERVRTYSGPMNKVVQALDPFNSREVLS PMNKVVQALDPFNSREVLSPLKTTSSYQNL K V V S R E 1 1 1 1 0 1 0 0 0 0 1 0 0 1 1 1 0 0 0 2 0 0 11 0 1244.6513 Q8WVV4 Q8WVV4 62 72 POF1B Protein POF1B yes yes 2 0.044012 72.643 By MS/MS 7 0 1 1 0 0 0 0 15297 1684 16044 66988 56492 56492 1 0 0 0 VVQGDIGEANEDVTQIVEILHSGPSK KIEKLARDILIDPIRVVQGDIGEANEDVTQ DVTQIVEILHSGPSKWNWLTRRLVEFTSSG R V V S K W 1 0 1 2 0 2 3 3 1 3 1 1 0 0 1 2 1 0 0 4 0 0 26 0 2733.3821 Q86XP3 Q86XP3 459 484 DDX42 ATP-dependent RNA helicase DDX42 yes yes 3 1.8947E-08 82.486 By MS/MS 2 0 1 1 10817000 0 0 10817000 15298 1559 16045 66989 56493 56493 1 0 0 2444400 VVQHSNVVINLIGR LFLEWDARDKDSIRRVVQHSNVVINLIGRD RVVQHSNVVINLIGRDWETKNFDFEDVFVK R V V G R D 0 1 2 0 0 1 0 1 1 2 1 0 0 0 0 1 0 0 0 4 0 0 14 0 1546.8944 Q16795 Q16795 119 132 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 2;3 2.2238E-17 191.52 By matching By MS/MS 6 0 3 1 2 22133000 0 4161300 17972000 15299 1400 16046 66990;66991;66992 56494;56495 56494 1 0 1440500 2688700 VVQLHEYSEELEK RVIVGGSSEYKINNKVVQLHEYSEELEKLG NKVVQLHEYSEELEKLGILIKARNFLVFQG K V V E K L 0 0 0 0 0 1 4 0 1 0 2 1 0 0 0 1 0 0 1 2 0 0 13 0 1601.7937 Q14683 Q14683 111 123 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 1.0584E-72 247.29 By MS/MS 1.5 0.5 1 1 2 137430000 0 0 137430000 15300 1312 16047 66993;66994 56496;56497 56496 2 0 0 30400000 VVQMLGSLGGQINK LSSNEAISLEEIRIRVVQMLGSLGGQINKN RVVQMLGSLGGQINKNLLTVTSSDEMMKSY R V V N K N 0 0 1 0 0 2 0 3 0 1 2 1 1 0 0 1 0 0 0 2 0 0 14 0 1442.7915 P78527 P78527 855 868 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 6.5682E-05 158.79 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 38495000 2282000 10249000 25964000 15301 1089 16048 66995;66996;66997;66998 56498;56499 56499 2 2282000 5009400 5639100 VVQNDAYTAPALPSSIR SSSKLSMSKALPLTKVVQNDAYTAPALPSS QNDAYTAPALPSSIRTKALTNMSRTLVNKE K V V I R T 3 1 1 1 0 1 0 0 0 1 1 0 0 0 2 2 1 0 1 2 0 0 17 0 1800.937 Q9BY77 Q9BY77 230 246 POLDIP3 Polymerase delta-interacting protein 3 yes yes 2;3 9.3985E-06 117.92 By MS/MS 4 0 2 2 21665000 0 0 21665000 15302 1933 16049 66999;67000 56500;56501 56500 2 0 0 3538600 VVQNVFQFR LIQPKIEQPFKLVEKVVQNVFQFRRKYCHR FKLVEKVVQNVFQFRRKYCHRGLRMLFPEA K V V F R R 0 1 1 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 3 0 0 9 0 1135.6138 Q8WVM0 Q8WVM0 248 256 TFB1M Dimethyladenosine transferase 1, mitochondrial yes yes 2 0.00068939 130.04 By MS/MS By matching 6 0 2 1 1 7654900 0 3881200 3773700 15303 1683 16050 67001;67002 56502 56502 1 0 1343500 564580 VVQVSAGDSHTAALTDDGR EGSEMVPGKVELQEKVVQVSAGDSHTAALT SAGDSHTAALTDDGRVFLWGSFRDNNGVIG K V V G R V 3 1 0 3 0 1 0 2 1 0 1 0 0 0 0 2 2 0 0 3 0 0 19 0 1897.913 P18754 P18754 121 139 RCC1 Regulator of chromosome condensation yes yes 2;3 2.2969E-81 249.13 By MS/MS By MS/MS By MS/MS 4.53 1.67 1 1 2 2 5 2 2 1 2 12 398910000 19212000 50104000 329600000 15304 599 16051 67003;67004;67005;67006;67007;67008;67009;67010;67011;67012;67013;67014;67015;67016;67017 56503;56504;56505;56506;56507;56508;56509;56510;56511 56505 9 15392000 12915000 51822000 VVRPDSELGERPPEDNQSFQYDHEAFLGK APRVLRAKPTVRKERVVRPDSELGERPPED DNQSFQYDHEAFLGKEDSKTFDQLTPDESK R V V G K E 1 2 1 3 0 2 4 2 1 0 2 1 0 2 3 2 0 0 1 2 0 0 29 2 3358.5854 Q15293 Q15293 38 66 RCN1 Reticulocalbin-1 yes yes 5 3.7818E-07 64.779 By MS/MS 6 0.816 1 1 1 3 40597000 0 0 40597000 15305 1354 16052 67018;67019;67020 56512 56512 1 0 0 5991900 VVSEDFLQDVSASTK KMNKKMEEVKEANIRVVSEDFLQDVSASTK VVSEDFLQDVSASTKSLQELFLAHILSPWG R V V T K S 1 0 0 2 0 1 1 0 0 0 1 1 0 1 0 3 1 0 0 3 0 0 15 0 1623.7992 P09874 P09874 453 467 PARP1 Poly [ADP-ribose] polymerase 1 yes yes 2;3 1.6837E-34 211.26 By MS/MS By MS/MS By MS/MS 2.31 1.14 3 6 2 1 1 2 3 8 1431000000 15050000 317440000 1098500000 15306 492 16053 67021;67022;67023;67024;67025;67026;67027;67028;67029;67030;67031;67032;67033 56513;56514;56515;56516;56517;56518;56519;56520;56521;56522;56523;56524;56525;56526;56527;56528 56514 15 17912000 143540000 238010000 VVSETNDTKVLR QTIQKTTTRRIVDGKVVSETNDTKVLRH__ DGKVVSETNDTKVLRH______________ K V V L R H 0 1 1 1 0 0 1 0 0 0 1 1 0 0 0 1 2 0 0 3 0 0 12 1 1359.7358 P05783 P05783 418 429 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 0.068924 43.382 By MS/MS 5 0 1 1 855400 0 855400 0 15307 436 16054 67034 56529 56529 1 0 220500 0 VVSIIAELLSTK KFVVDGDTPLIENGKVVSIIAELLSTKTDM NGKVVSIIAELLSTKTDMVEKALLYRTVAT K V V T K T 1 0 0 0 0 0 1 0 0 2 2 1 0 0 0 2 1 0 0 2 0 0 12 0 1271.7701 O94832 O94832 296 307 MYO1D Unconventional myosin-Id yes yes 2 1.2497E-05 156.48 By MS/MS By MS/MS 2 0.707 1 2 1 1 3 11690000 0 3215000 8475200 15308 299 16055 67035;67036;67037;67038 56530;56531;56532 56532 3 0 1447800 1846800 VVSLSEYR ISAIDLINIESFSSRVVSLSEYRQSLHTYL IESFSSRVVSLSEYRQSLHTYLRSKMSQVA R V V Y R Q 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 8 0 951.50255 O00567 O00567 271 278 NOP56 Nucleolar protein 56 yes yes 2 7.0611E-10 173.88 By matching By MS/MS By MS/MS 4.12 1.05 3 2 2 1 1 4 3 198100000 11322000 14940000 171830000 15309 130 16056 67039;67040;67041;67042;67043;67044;67045;67046 56533;56534;56535;56536;56537;56538;56539 56537 7 13064000 4958100 31822000 VVSLSTPIIWR NKLIVKEYEVRSSGRVVSLSTPIIWRRGHE SSGRVVSLSTPIIWRRGHEPQSFIRRNQDL R V V W R R 0 1 0 0 0 0 0 0 0 2 1 0 0 0 1 2 1 1 0 2 0 0 11 0 1269.7445 Q9H0U9 Q9H0U9 348 358 TSPYL1 Testis-specific Y-encoded-like protein 1 yes yes 2 0.00016767 138.4 By MS/MS 4 0 1 1 6035800 0 6035800 0 15310 1965 16057 67047 56540 56540 1 0 2003100 0 VVSNLPAITMEEVAPVSVSDAALLAPEEIKEK SNFHFIPKPPVPEIKVVSNLPAITMEEVAP VSDAALLAPEEIKEKNKAGDIKTAAEKTAT K V V E K N 5 0 1 1 0 0 5 0 0 2 3 2 1 0 3 3 1 0 0 5 0 0 32 1 3348.7738 O00566 O00566 526 557 MPHOSPH10 U3 small nucleolar ribonucleoprotein protein MPP10 yes yes 3;4 1.4317E-06 54.997 By MS/MS By MS/MS 2.25 0.433 3 1 1 3 14492000 0 2953100 11539000 15311 129 16058 67048;67049;67050;67051 56541;56542;56543;56544 56542 4 0 1329800 2379500 VVSQYHELVVQAR DNVVKKVQAAQSEAKVVSQYHELVVQARDD AKVVSQYHELVVQARDDFKRELDSITPEVL K V V A R D 1 1 0 0 0 2 1 0 1 0 1 0 0 0 0 1 0 0 1 4 0 0 13 0 1526.8205 Q16891 Q16891 354 366 IMMT MICOS complex subunit MIC60 yes yes 3 0.017721 60.448 By MS/MS By MS/MS 4.25 2.77 1 2 1 2 2 34336000 0 0 34336000 15312 1403 16059 67052;67053;67054;67055 56545;56546;56547 56547 3 0 0 7053600 VVSQYSSLLSPMSVNAVMK RETLLNSATTSLNSKVVSQYSSLLSPMSVN YSSLLSPMSVNAVMKVIDPATATSVDLRDI K V V M K V 1 0 1 0 0 1 0 0 0 0 2 1 2 0 1 5 0 0 1 4 0 0 19 0 2039.0431 P50991 P50991 175 193 CCT4 T-complex protein 1 subunit delta yes yes 2 1.1765E-05 102.52 By MS/MS 4 0 1 1 10241000 0 10241000 0 15313 886 16060 67056 56548 56548 1 0 3398600 0 VVSSIEQK VAYKNVVGARRSSWRVVSSIEQKTEGAEKK ARRSSWRVVSSIEQKTEGAEKKQQMAREYR R V V Q K T 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 2 0 0 0 2 0 0 8 0 888.49165 P63104 P63104 61 68 YWHAZ 14-3-3 protein zeta/delta yes yes 2 0.065189 69.198 By matching By MS/MS 7 0 2 1 1 6123600 0 706780 5416800 15314 1059 16061 67057;67058 56549 56549 1 0 405840 961180 VVSSVLQFGNISFK HIMGFSHEEILSMLKVVSSVLQFGNISFKK KVVSSVLQFGNISFKKERNTDQASMPENTV K V V F K K 0 0 1 0 0 1 0 1 0 1 1 1 0 2 0 3 0 0 0 3 0 0 14 0 1523.8348 P35580 P35580 349 362 MYH10 Myosin-10 yes yes 2;3 5.9409E-45 218.18 By MS/MS By MS/MS 2 1.15 3 1 1 1 5 1 78920000 0 46704000 32215000 15315 753 16062 67059;67060;67061;67062;67063;67064 56550;56551;56552;56553;56554;56555 56550 6 0 22199000 6941300 VVSSVLQFGNISFKK HIMGFSHEEILSMLKVVSSVLQFGNISFKK VVSSVLQFGNISFKKERNTDQASMPENTVA K V V K K E 0 0 1 0 0 1 0 1 0 1 1 2 0 2 0 3 0 0 0 3 0 0 15 1 1651.9297 P35580 P35580 349 363 MYH10 Myosin-10 yes yes 3 0.019469 51.695 By MS/MS 1.5 0.5 1 1 2 7087000 0 7087000 0 15316 753 16063 67065;67066 56556 56556 1 0 3427300 0 VVSTHEQVLR SRQIRTKVMDVHDGKVVSTHEQVLRTKN__ VHDGKVVSTHEQVLRTKN____________ K V V L R T 0 1 0 0 0 1 1 0 1 0 1 0 0 0 0 1 1 0 0 3 0 0 10 0 1166.6408 CON__P02533;P02533 CON__P02533 460 469 KRT14 Keratin, type I cytoskeletal 14 yes no 2 0.0052309 97.431 By MS/MS 1.5 0.5 1 1 2 9358000 9358000 0 0 + 15317 35 16064 67067;67068 56557 56557 1 10457000 0 0 VVSVLTVLHQDWLNGK AKTKPREEQYNSTYRVVSVLTVLHQDWLNG VSVLTVLHQDWLNGKEYKCKVSNKALPAPI R V V G K E 0 0 1 1 0 1 0 1 1 0 3 1 0 0 0 1 1 1 0 4 0 0 16 0 1806.9992 P0DOX5;P01857;P01860;P01861 P0DOX5 304 319 IGHG1;IGHG3;IGHG4 Ig gamma-1 chain C region;Ig gamma-3 chain C region;Ig gamma-4 chain C region no no 2;3 2.7458E-175 302.58 By MS/MS By matching 6.31 2.49 2 2 2 2 1 2 2 12 1 123920000 123110000 807650 0 15318 381;383;384 16065 67069;67070;67071;67072;67073;67074;67075;67076;67077;67078;67079;67080;67081 56558;56559;56560;56561;56562;56563;56564;56565 56564 8 86692000 279580 0 VVSVLTVVHQDWLNGK AKTKPREEQFNSTFRVVSVLTVVHQDWLNG VSVLTVVHQDWLNGKEYKCKVSNKGLPAPI R V V G K E 0 0 1 1 0 1 0 1 1 0 2 1 0 0 0 1 1 1 0 5 0 0 16 0 1792.9836 P01859 P01859 181 196 IGHG2 Ig gamma-2 chain C region yes yes 2;3 4.7814E-74 238.98 By MS/MS 8.17 2.41 1 1 2 2 6 24296000 24296000 0 0 15319 382 16066 67082;67083;67084;67085;67086;67087 56566;56567;56568;56569;56570 56568 5 19890000 0 0 VVSWLVSSDNPQPEMAPPVHEPR EISDDNARLPCFNGRVVSWLVSSDNPQPEM DNPQPEMAPPVHEPRAELAPPAPPLPPLPP R V V P R A 1 1 1 1 0 1 2 0 1 0 1 0 1 0 5 3 0 1 0 4 0 0 23 0 2570.2588 O14641 O14641 85 107 DVL2 Segment polarity protein dishevelled homolog DVL-2 yes yes 3 0.016456 37.896 By MS/MS 2.5 0.5 1 1 2 6482000 0 0 6482000 15320 140 16067 67088;67089 56571 56571 0 0 0 1353900 VVTATLWGEDADKFDGSR EVAKRNIYLMDTSGKVVTATLWGEDADKFD ATLWGEDADKFDGSRQPVLAIKGARVSDFG K V V S R Q 2 1 0 3 0 0 1 2 0 0 1 1 0 1 0 1 2 1 0 2 0 0 18 1 1965.9432 P27694 P27694 355 372 RPA1 Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed yes yes 2;3 1.9537E-07 143.25 By MS/MS 3 0 2 2 18654000 0 0 18654000 15321 679 16068 67090;67091 56572;56573 56572 2 0 0 3617900 VVTDLISLIR HCTAFWLLVDLNRCRVVTDLISLIRQRFGF LNRCRVVTDLISLIRQRFGFSSGAFLGLYL R V V I R Q 0 1 0 1 0 0 0 0 0 2 2 0 0 0 0 1 1 0 0 2 0 0 10 0 1127.6914 P38432 P38432 37 46 COIL Coilin yes yes 2 0.00051552 133.23 By MS/MS By MS/MS By MS/MS 5.89 2.73 1 1 3 1 2 2 2 2 2 2 1 8 9 73788000 1744400 19553000 52490000 15322 772 16069 67092;67093;67094;67095;67096;67097;67098;67099;67100;67101;67102;67103;67104;67105;67106;67107;67108;67109 56574;56575;56576;56577;56578;56579;56580;56581;56582;56583;56584;56585;56586 56575 11 2012700 10809000 15597000 VVTDTDETELAR IEEKRGVFNVQMEPKVVTDTDETELARQME EPKVVTDTDETELARQMERLERENAEVDGD K V V A R Q 1 1 0 2 0 0 2 0 0 0 1 0 0 0 0 0 3 0 0 2 0 0 12 0 1347.6518 P05198 P05198 277 288 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 6.0495E-12 177.06 By matching By MS/MS By MS/MS 6.33 0.943 1 3 1 1 1 1 4 457510000 4333900 93357000 359820000 15323 428 16070 67110;67111;67112;67113;67114;67115 56587;56588;56589;56590;56591 56588 4 5770600 32317000 53492000 VVTGVANALAHR FGSEFSPELQASFQKVVTGVANALAHRYH_ FQKVVTGVANALAHRYH_____________ K V V H R Y 3 1 1 0 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 3 0 0 12 0 1206.6833 CON__Q3SX09 CON__Q3SX09 188 199 yes yes 2;3 2.0825E-45 219.19 By MS/MS By MS/MS By MS/MS 6.09 2.94 3 2 3 4 4 1 5 3 4 6 12 5 18 7773700000 1518000000 206530000 6049100000 + 15324 82 16071 67116;67117;67118;67119;67120;67121;67122;67123;67124;67125;67126;67127;67128;67129;67130;67131;67132;67133;67134;67135;67136;67137;67138;67139;67140;67141;67142;67143;67144;67145;67146;67147;67148;67149;67150 56592;56593;56594;56595;56596;56597;56598;56599;56600;56601;56602;56603;56604;56605;56606;56607;56608;56609;56610;56611;56612;56613;56614;56615;56616;56617;56618 56613 23 1876000000 948780000 7925400000 VVTGVANALAHRYH FGSEFSPELQASFQKVVTGVANALAHRYH_ KVVTGVANALAHRYH_______________ K V V Y H - 3 1 1 0 0 0 0 1 2 0 1 0 0 0 0 0 1 0 1 3 0 0 14 1 1506.8055 CON__Q3SX09 CON__Q3SX09 188 201 yes yes 3 0.00015255 116.24 By MS/MS By matching 10 0 2 1 1 10333000 8111800 0 2221500 + 15325 82 16072 67151;67152 56619 56619 1 14778000 0 4858700 VVTKPGHIINPIK TWNTQRAFQKLTTPKVVTKPGHIINPIKAE PKVVTKPGHIINPIKAEDVGYRSSSRSDLS K V V I K A 0 0 1 0 0 0 0 1 1 3 0 2 0 0 2 0 1 0 0 2 0 0 13 1 1414.866 Q9BVJ6 Q9BVJ6 721 733 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A yes yes 3 0.00059572 107.09 By MS/MS 2 0 1 1 17597000 0 0 17597000 15326 1915 16073 67153 56620 56620 1 0 0 3976500 VVTLWYRPPELLLGER FSLAKNSQPNRYTNRVVTLWYRPPELLLGE VTLWYRPPELLLGERDYGPPIDLWGAGCIM R V V E R D 0 2 0 0 0 0 2 1 0 0 4 0 0 0 2 0 1 1 1 2 0 0 16 1 1940.0884 P50750 P50750 189 204 CDK9 Cyclin-dependent kinase 9 yes yes 3 2.7788E-05 101.53 By MS/MS 4.5 0.5 1 1 2 5702700 0 0 5702700 15327 882 16074 67154;67155 56621 56621 1 0 0 834880 VVTSEDQVQEGTK YKQENEMLSSSRDQRVVTSEDQVQEGTKVL QRVVTSEDQVQEGTKVLKLKTKMADKENMK R V V T K V 0 0 0 1 0 2 2 1 0 0 0 1 0 0 0 1 2 0 0 3 0 0 13 0 1418.6889 Q8WWK9 Q8WWK9 58 70 CKAP2 Cytoskeleton-associated protein 2 yes yes 2 6.0324E-45 222.3 By MS/MS By MS/MS 3 0 2 1 1 12799000 0 2015300 10783000 15328 1688 16075 67156;67157 56622;56623 56623 2 0 859130 2091500 VVTTNYKPVANHQYNIEYER EESSKPVRLSQQLDKVVTTNYKPVANHQYN YKPVANHQYNIEYERKKKEDGKRARADKQH K V V E R K 1 1 3 0 0 1 2 0 1 1 0 1 0 0 1 0 2 0 3 3 0 0 20 1 2437.2026 P13984 P13984 148 167 GTF2F2 General transcription factor IIF subunit 2 yes yes 3;4 3.665E-08 107.57 By MS/MS 6 0 2 2 44885000 0 0 44885000 15329 554 16076 67158;67159 56624;56625 56624 2 0 0 6715300 VVVDPVVTEQPSTSSAAK GKTESSSVVRTRSNRVVVDPVVTEQPSTSS DPVVTEQPSTSSAAKTFITKANASAIPGKT R V V A K T 2 0 0 1 0 1 1 0 0 0 0 1 0 0 2 3 2 0 0 5 0 0 18 0 1812.9469 Q8WWQ0 Q8WWQ0 1511 1528 PHIP PH-interacting protein yes yes 2 2.5828E-40 212.59 By MS/MS By MS/MS 1 0 2 1 1 36424000 0 10370000 26054000 15330 1690 16077 67160;67161 56626;56627 56627 2 0 5068900 5613700 VVVEPPEGEEKVEK IECTQAPAPASEDEKVVVEPPEGEEKVEKA KVVVEPPEGEEKVEKAEVKERTEEPMETEP K V V E K A 0 0 0 0 0 0 5 1 0 0 0 2 0 0 2 0 0 0 0 4 0 0 14 1 1566.8141 Q14839 Q14839 1607 1620 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.062577 41.967 By MS/MS 1.5 0.5 1 1 2 25689000 0 0 25689000 15331 1321 16078 67162;67163 56628 56628 1 0 0 5569800 VVVLGLLPR KAIVQLVNERQPQARVVVLGLLPRGQHPNP RQPQARVVVLGLLPRGQHPNPLREKNRQVN R V V P R G 0 1 0 0 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 3 0 0 9 0 964.64334 Q15102 Q15102 133 141 PAFAH1B3 Platelet-activating factor acetylhydrolase IB subunit gamma yes yes 2 0.02067 81.784 By matching By MS/MS 7 0 2 1 1 3159900 568180 0 2591800 15332 1345 16079 67164;67165 56629 56629 1 1224600 0 459890 VVVLPFPSK SLDVSFLFQEPMEEKVVVLPFPSKEQRSAE EPMEEKVVVLPFPSKEQRSAECPGPAQKGY K V V S K E 0 0 0 0 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 3 0 0 9 0 984.6008 CON__Q58D62 CON__Q58D62 358 366 yes yes 2 0.0030141 101.54 By MS/MS By MS/MS 2.8 1.17 1 1 1 2 4 1 42315000 29888000 12426000 0 + 15333 89 16080 67166;67167;67168;67169;67170 56630;56631 56631 2 24922000 4123900 0 VVVPELSAGVASR SEIATERDLVAWSRRVVVPELSAGVASRQE RRVVVPELSAGVASRQEEWRTAKGEEEIKT R V V S R Q 2 1 0 0 0 0 1 1 0 0 1 0 0 0 1 2 0 0 0 4 0 0 13 0 1282.7245 Q8WWQ0 Q8WWQ0 723 735 PHIP PH-interacting protein yes yes 2 0.010841 87.298 By MS/MS By MS/MS 1 0 2 1 1 12523000 0 3842700 8680500 15334 1690 16081 67171;67172 56632;56633 56633 2 0 1878300 1870300 VVVQVLAEEPEAVLK EDAFRYMAQGKHIGKVVVQVLAEEPEAVLK VVVQVLAEEPEAVLKGAKPKLMSAISKTFC K V V L K G 2 0 0 0 0 1 3 0 0 0 2 1 0 0 1 0 0 0 0 5 0 0 15 0 1621.9291 P49327 P49327 1852 1866 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.0014617 94.767 By MS/MS 1 0 1 1 3692500 0 0 3692500 15335 853 16082 67173 56634 56634 1 0 0 795610 VVVSGLPPSGSWQDLK PRGRYGPPSRRSENRVVVSGLPPSGSWQDL VVSGLPPSGSWQDLKDHMREAGDVCYADVY R V V L K D 0 0 0 1 0 1 0 2 0 0 2 1 0 0 2 3 0 1 0 3 0 0 16 0 1667.8883 Q07955 Q07955 123 138 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 3.3223E-05 145.01 By MS/MS By MS/MS 6.4 0.49 3 2 2 3 122420000 0 12397000 110030000 15336 1179 16083 67174;67175;67176;67177;67178 56635;56636;56637;56638;56639;56640;56641;56642;56643;56644;56645;56646;56647;56648;56649;56650;56651;56652;56653;56654 56645 20 0 4291500 16841000 VVVSGLPPSGSWQDLKDHMR PRGRYGPPSRRSENRVVVSGLPPSGSWQDL LPPSGSWQDLKDHMREAGDVCYADVYRDGT R V V M R E 0 1 0 2 0 1 0 2 1 0 2 1 1 0 2 3 0 1 0 3 0 0 20 1 2207.1157 Q07955 Q07955 123 142 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 3;4 1.1502E-18 173.77 By MS/MS By MS/MS 6.14 0.35 6 1 3 4 114380000 0 67758000 46617000 15337 1179 16084;16085 67179;67180;67181;67182;67183;67184;67185 56655;56656;56657;56658;56659;56660;56661;56662;56663;56664;56665;56666;56667;56668;56669;56670;56671 56665 557 17 0 23455000 6999400 VVVTDDSDER LDVLNPETSEDENDRVVVTDDSDERRLKGA DENDRVVVTDDSDERRLKGAEDKSEEGEDN R V V E R R 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 3 0 0 10 0 1133.52 Q9BQG0 Q9BQG0 705 714 MYBBP1A Myb-binding protein 1A yes yes 2 0.018636 83.783 By MS/MS 2 0 1 1 2649600 0 2649600 0 15338 1885 16086 67186 56672 56672 1 0 1193100 0 VVVTDDSDERR LDVLNPETSEDENDRVVVTDDSDERRLKGA ENDRVVVTDDSDERRLKGAEDKSEEGEDNR R V V R R L 0 2 0 3 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 3 0 0 11 1 1289.6212 Q9BQG0 Q9BQG0 705 715 MYBBP1A Myb-binding protein 1A yes yes 2 0.010109 99.442 By MS/MS 2 0 1 1 885160 0 885160 0 15339 1885 16087 67187 56673 56673 1 0 398600 0 VVVVVPNEEDWK GQRRKLLLFKTFSRKVVVVVPNEEDWKKRL SRKVVVVVPNEEDWKKRLELRKEVEGDDVP K V V W K K 0 0 1 1 0 0 2 0 0 0 0 1 0 0 1 0 0 1 0 5 0 0 12 0 1411.7347 Q1KMD3 Q1KMD3 559 570 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2 0.006535 99.815 By MS/MS 2 0 1 1 11160000 0 0 11160000 15340 1404 16088 67188 56674 56674 1 0 0 2521900 VVWCAVGEQELR NLRKSEEEVAARRARVVWCAVGEQELRKCN RARVVWCAVGEQELRKCNQWSGLSEGSVTC R V V L R K 1 1 0 0 1 1 2 1 0 0 1 0 0 0 0 0 0 1 0 3 0 0 12 0 1444.7133 P02788 P02788 364 375 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 0.034539 77.192 By MS/MS 8.5 0.5 1 1 2 4103900 4103900 0 0 15341 400 16089 67189;67190 56675 56675 1 2768200 0 0 VVWVEESDKR AVGRVGSTSENITQKVVWVEESDKRSFLLD NITQKVVWVEESDKRSFLLDLLNATGKDSL K V V K R S 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 1 0 1 0 3 0 0 10 1 1245.6354 O00571 O00571 419 428 DDX3X ATP-dependent RNA helicase DDX3X yes yes 2;3 5.4847E-07 160.26 By MS/MS By MS/MS 3.17 1.28 2 1 4 3 2 3 9 126660000 0 44976000 81681000 15342 131 16090 67191;67192;67193;67194;67195;67196;67197;67198;67199;67200;67201;67202 56676;56677;56678;56679;56680;56681;56682;56683;56684 56681 9 0 18930000 15147000 VVYIFGPPVK FLARLIPRMCHNVNRVVYIFGPPVKEPPTD HNVNRVVYIFGPPVKEPPTDVTPTFLTTGV R V V V K E 0 0 0 0 0 0 0 1 0 1 0 1 0 1 2 0 0 0 1 3 0 0 10 0 1117.6536 P49915 P49915 560 569 GMPS GMP synthase [glutamine-hydrolyzing] yes yes 2 0.013043 86.953 By MS/MS 3 0 1 1 2565500 0 2565500 0 15343 873 16091 67203 56685 56685 1 0 1093700 0 VVYSAFLMATPR PLHRGGGQIIPTARRVVYSAFLMATPRLME ARRVVYSAFLMATPRLMEPYYFVEVQAPAD R V V P R L 2 1 0 0 0 0 0 0 0 0 1 0 1 1 1 1 1 0 1 2 0 0 12 0 1353.7115 Q15029 Q15029 815 826 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 5.2292E-05 145.89 By MS/MS By MS/MS 2 0 2 1 1 35973000 0 9373700 26599000 15344 1335 16092 67204;67205 56686;56687 56687 2 0 4221100 6010800 VVYSPGEPLAGTVR MGRVQLFEISLSHGRVVYSPGEPLAGTVRV RVVYSPGEPLAGTVRVRLGAPLPFRAIRVT R V V V R V 1 1 0 0 0 0 1 2 0 0 1 0 0 0 2 1 1 0 1 3 0 0 14 0 1443.7722 Q8N5I2 Q8N5I2 16 29 ARRDC1 Arrestin domain-containing protein 1 yes yes 2 0.00077943 113.69 By MS/MS 5 0 1 1 4421900 0 4421900 0 15345 1607 16093 67206 56688 56688 1 0 1139800 0 VWAEYALK RYIQPWESEFIDSQRVWAEYALKRQEAIAQ EFIDSQRVWAEYALKRQEAIAQNRRLTLED R V W L K R 2 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 8 0 978.51747 Q6P2Q9 Q6P2Q9 1385 1392 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.012217 91.041 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 79991000 3108100 27534000 49349000 15346 1490 16094 67207;67208;67209;67210 56689;56690 56690 2 3108100 13458000 10669000 VWAEYALKR RYIQPWESEFIDSQRVWAEYALKRQEAIAQ FIDSQRVWAEYALKRQEAIAQNRRLTLEDL R V W K R Q 2 1 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 1 0 0 9 1 1134.6186 Q6P2Q9 Q6P2Q9 1385 1393 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.030932 83.753 By MS/MS 1 0 1 1 3031600 0 3031600 0 15347 1490 16095 67211 56691 56691 1 0 1481800 0 VWAHYEEQPVEEVMPVLEEK SLLSAEEAAKQKKEKVWAHYEEQPVEEVMP EEQPVEEVMPVLEEKERSASYKPVFVTEIT K V W E K E 1 0 0 0 0 1 6 0 1 0 1 1 1 0 2 0 0 1 1 4 0 0 20 0 2440.1621 Q7KZF4 Q7KZF4 657 676 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 3 3.5455E-07 99.409 By MS/MS 2 0 1 1 19580000 0 0 19580000 15348 1518 16096 67212 56692 56692 1 0 0 4424700 VWDISGLR TEDLVVSASLDQTVRVWDISGLRKKNLSPG SLDQTVRVWDISGLRKKNLSPGAVESDVRG R V W L R K 0 1 0 1 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 1 0 0 8 0 944.50797 P53621 P53621 161 168 COPA Coatomer subunit alpha;Xenin;Proxenin yes yes 2 0.0026694 107.67 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 2 1 11801000 4667500 4568400 2565500 15349 922 16097 67213;67214;67215;67216 56693;56694 56694 2 5623800 2029500 579750 VWDISTVSSVNEAFGR LPFIYAFGGQKEGLRVWDISTVSSVNEAFG WDISTVSSVNEAFGRRERLVLGSARNSSIS R V W G R R 1 1 1 1 0 0 1 1 0 1 0 0 0 1 0 3 1 1 0 3 0 0 16 0 1765.8635 Q13610 Q13610 457 472 PWP1 Periodic tryptophan protein 1 homolog yes yes 2 3.4909E-05 125.54 By MS/MS 4 0 1 1 5486600 0 5486600 0 15350 1262 16098 67217 56695 56695 1 0 1820800 0 VWDVRPFAPK EGSYLLSNAMDNTVRVWDVRPFAPKERCVK DNTVRVWDVRPFAPKERCVKIFQGNVHNFE R V W P K E 1 1 0 1 0 0 0 0 0 0 0 1 0 1 2 0 0 1 0 2 0 0 10 1 1213.6608 Q96DI7 Q96DI7 261 270 SNRNP40 U5 small nuclear ribonucleoprotein 40 kDa protein yes yes 2;3 0.0043697 116.37 By MS/MS By MS/MS 5.4 0.49 3 2 2 3 66175000 0 12639000 53536000 15351 1767 16099 67218;67219;67220;67221;67222 56696;56697;56698 56698 3 0 4131000 7582700 VWETANNR SQAYFALASTDGHLRVWETANNRLHQEYVP STDGHLRVWETANNRLHQEYVPSAHLSGTC R V W N R L 1 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 8 0 988.47264 Q15061 Q15061 40 47 WDR43 WD repeat-containing protein 43 yes yes 2 0.0094571 94.407 By MS/MS By MS/MS 3 0 2 1 1 5430400 0 1574200 3856200 15352 1343 16100 67223;67224 56699;56700 56700 2 0 671070 747920 VWEVAAPYIEK APDIEAAHRLLLEQKVWEVAAPYIEKYRME LEQKVWEVAAPYIEKYRMEHIPESRPLSPT K V W E K Y 2 0 0 0 0 0 2 0 0 1 0 1 0 0 1 0 0 1 1 2 0 0 11 0 1303.6812 P42357 P42357 612 622 HAL Histidine ammonia-lyase yes yes 2 0.027578 79.974 By MS/MS 5 4 1 1 2 3531100 3531100 0 0 15353 802 16101 67225;67226 56701;56702 56702 2 1982000 0 0 VWFGDVEAETMYR AMLELTGQNFTPNLRVWFGDVEAETMYRCG LRVWFGDVEAETMYRCGESMLCVVPDISAF R V W Y R C 1 1 0 1 0 0 2 1 0 0 0 0 1 1 0 0 1 1 1 2 0 0 13 0 1601.7184 Q06330;Q9UBG7 Q06330 384 396 RBPJ;RBPJL Recombining binding protein suppressor of hairless;Recombining binding protein suppressor of hairless-like protein yes no 2 1.6995E-57 229.17 By MS/MS 4 0 1 1 10636000 0 0 10636000 15354 1170 16102 67227 56703 56703 1 0 0 1737200 VWGNVGTVEWADPIEDPDPEVMAK TAAQARRRLMSGKVKVWGNVGTVEWADPIE WADPIEDPDPEVMAKVKVLFVRNLANTVTE K V W A K V 2 0 1 3 0 0 3 2 0 1 0 1 1 0 3 0 1 2 0 4 0 0 24 0 2653.237 O60506 O60506 313 336 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 3 0.0055805 40.668 By MS/MS 3.5 0.5 1 1 2 7395900 0 0 7395900 15355 227 16103 67228;67229 56704 56704 1 0 0 1374200 VWHDKDKDTSSDPLLELR ADGTLITCVDSGILRVWHDKDKDTSSDPLL DKDKDTSSDPLLELRVGPGVCRMRQDPAHP R V W L R V 0 1 0 4 0 0 1 0 1 0 3 2 0 0 1 2 1 1 0 1 0 0 18 2 2153.0753 Q6RFH5 Q6RFH5 111 128 WDR74 WD repeat-containing protein 74 yes yes 3 0.054389 37.552 By MS/MS 5 0 1 1 6740700 0 0 6740700 15356 1499 16104 67230 56705 56705 1 0 0 940210 VWIKPGAEQSFLYGNHVLK HVTALDYLAPYAKYKVWIKPGAEQSFLYGN PGAEQSFLYGNHVLKSGLGRITENTSQYQG K V W L K S 1 0 1 0 0 1 1 2 1 1 2 2 0 1 1 1 0 1 1 2 0 0 19 1 2185.1684 Q9Y221 Q9Y221 97 115 NIP7 60S ribosome subunit biogenesis protein NIP7 homolog yes yes 2;3;4 0.00031729 68.069 By MS/MS By MS/MS 7.6 0.49 2 3 1 4 145960000 0 4818700 141140000 15357 2226 16105 67231;67232;67233;67234;67235 56706;56707;56708;56709;56710 56710 5 0 2766900 23885000 VWINTSDIILVGLR GVKRLCHIRGKLRKKVWINTSDIILVGLRD KVWINTSDIILVGLRDYQDNKADVILKYNA K V W L R D 0 1 1 1 0 0 0 1 0 3 2 0 0 0 0 1 1 1 0 2 0 0 14 0 1597.9192 P47813;O14602 P47813 69 82 EIF1AX;EIF1AY Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal yes no 2 0.00038958 145.34 By MS/MS By MS/MS 8.33 0.471 2 1 1 2 32203000 0 1451300 30751000 15358 138 16106 67236;67237;67238 56711;56712;56713 56711 3 0 660270 4836400 VWKPQLFER QIYANNDKLSKRLKKVWKPQLFEREFYSEI SKRLKKVWKPQLFEREFYSEILDKKFTVTV K V W E R E 0 1 0 0 0 1 1 0 0 0 1 1 0 1 1 0 0 1 0 1 0 0 9 1 1201.6608 Q13084 Q13084 104 112 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 3 0.019959 64.841 By matching By MS/MS 6 0 2 1 1 7399500 1258900 0 6140600 15359 1218 16107 67239;67240 56714 56714 1 1676300 0 918700 VWLDPNETNEIANANSR QKRLASSVLRCGKKKVWLDPNETNEIANAN LDPNETNEIANANSRQQIRKLIKDGLIIRK K V W S R Q 2 1 4 1 0 0 2 0 0 1 1 0 0 0 1 1 1 1 0 1 0 0 17 0 1941.9181 P84098 P84098 22 38 RPL19 60S ribosomal protein L19 yes yes 2;3 2.771E-93 259.47 By MS/MS By MS/MS 6.38 2.06 1 3 3 1 2 6 334460000 0 25058000 309400000 15360 1111 16108 67241;67242;67243;67244;67245;67246;67247;67248 56715;56716;56717;56718;56719;56720;56721;56722 56719 8 0 12368000 62344000 VWLFFMR VGKGPGCGFWAAGWRVWLFFMRGITPLLER GFWAAGWRVWLFFMRGITPLLERWLGNLLA R V W M R G 0 1 0 0 0 0 0 0 0 0 1 0 1 2 0 0 0 1 0 1 0 0 7 0 997.52078 Q6P2Q9 Q6P2Q9 636 642 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0029981 140.79 By MS/MS 1 0 1 1 7281200 0 0 7281200 15361 1490 16109 67249 56723 56723 1 0 0 1568900 VWQVTIGTR DGQTLFAGYTDNLVRVWQVTIGTR______ TDNLVRVWQVTIGTR_______________ R V W T R - 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 2 1 0 2 0 0 9 0 1058.5873 P63244 P63244 309 317 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 4.6022E-25 173.23 By MS/MS By MS/MS By MS/MS 7.71 1.75 3 1 1 2 1 2 4 173160000 12523000 61800000 98841000 15362 1068 16110 67250;67251;67252;67253;67254;67255;67256 56724;56725;56726;56727;56728;56729 56728 6 16674000 32407000 23464000 VWQYITLMR SKKVCNVAPIAGETKVWQYITLMRRIFLID IAGETKVWQYITLMRRIFLIDCPGVVYPSE K V W M R R 0 1 0 0 0 1 0 0 0 1 1 0 1 0 0 0 1 1 1 1 0 0 9 0 1208.6376 Q13823 Q13823 347 355 GNL2 Nucleolar GTP-binding protein 2 yes yes 2 0.00069791 130.27 By MS/MS By MS/MS 3 0.707 1 2 1 3 1 14780000 0 8448900 6331500 15363 1269 16111 67257;67258;67259;67260 56730;56731;56732 56732 3 0 3650500 1228000 VYACEVTHQGLSSPVTK SSTLTLSKADYEKHKVYACEVTHQGLSSPV ACEVTHQGLSSPVTKSFNRGEC________ K V Y T K S 1 0 0 0 1 1 1 1 1 0 1 1 0 0 1 2 2 0 1 3 0 0 17 0 1874.9196 P01834;P0DOX7 P01834 84 100 IGKC Ig kappa chain C region no no 2;3 2.9046E-175 293.8 By MS/MS 7.5 2.06 1 1 1 2 1 6 113900000 113900000 0 0 15364 380;504 16112 67261;67262;67263;67264;67265;67266 56733;56734;56735;56736 56736 4 79125000 0 0 VYAENAIR KVKKALLQKNVECARVYAENAIRKKNEGVN KNVECARVYAENAIRKKNEGVNWLRMASRV R V Y I R K 2 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 8 0 934.48723 Q9HD42 Q9HD42 47 54 CHMP1A Charged multivesicular body protein 1a yes yes 2 0.001517 114.72 By MS/MS By matching 7 0 2 1 1 34071000 0 12869000 21201000 15365 2016 16113 67267;67268 56737 56737 1 0 7389600 3762000 VYAEVNSLR ______________________________ AGSRARVYAEVNSLRSREYWDYEAHVPSWG R V Y L R S 1 1 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 1 2 0 0 9 0 1049.5506 P19784 P19784 12 20 CSNK2A2 Casein kinase II subunit alpha yes yes 2 0.0005802 116.73 By MS/MS 5 0 1 1 12080000 0 0 12080000 15366 612 16114 67269 56738 56738 1 0 0 1684900 VYALPEDLVEVKPK NAKYAVSMARRIGARVYALPEDLVEVKPKM RVYALPEDLVEVKPKMVMTVFACLMGRGMK R V Y P K M 1 0 0 1 0 0 2 0 0 0 2 2 0 0 2 0 0 0 1 3 0 0 14 1 1598.892 P13797 P13797 600 613 PLS3 Plastin-3 yes yes 3 0.01696 59.607 By MS/MS By MS/MS 3 0 2 1 1 15182000 0 5150400 10032000 15367 551 16115 67270;67271 56739;56740 56740 2 0 2195600 1945700 VYENYPTYDLTER SANLEEVTMKQICKKVYENYPTYDLTERKD KKVYENYPTYDLTERKDFIKTTVKELIS__ K V Y E R K 0 1 1 1 0 0 2 0 0 0 1 0 0 0 1 0 2 0 3 1 0 0 13 0 1661.7573 P35659 P35659 350 362 DEK Protein DEK yes yes 2 2.8822E-11 177.44 By MS/MS By MS/MS 5 1.1 2 2 1 2 3 232060000 0 8359400 223700000 15368 758 16116 67272;67273;67274;67275;67276 56741;56742;56743;56744 56742 4 0 2334700 34350000 VYFFGSGQPEK GGMFLATGSTDHIIRVYFFGSGQPEKISEL HIIRVYFFGSGQPEKISELEFHTDKVDSIQ R V Y E K I 0 0 0 0 0 1 1 2 0 0 0 1 0 2 1 1 0 0 1 1 0 0 11 0 1257.603 Q8WWQ0 Q8WWQ0 347 357 PHIP PH-interacting protein yes yes 2 0.015193 86.898 By MS/MS 1 0 1 1 4559200 0 4559200 0 15369 1690 16117 67277 56745 56745 1 0 2228500 0 VYFLPITPHYVTQVIR PNIATVQTSQGLADKVYFLPITPHYVTQVI YFLPITPHYVTQVIRNERPDGVLLTFGGQT K V Y I R N 0 1 0 0 0 1 0 0 1 2 1 0 0 1 2 0 2 0 2 3 0 0 16 0 1945.0826 P27708 P27708 450 465 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase yes yes 3 0.010563 54.501 By MS/MS 1 0 1 1 5731100 0 5731100 0 15370 681 16118 67278 56746 56746 1 0 2801300 0 VYIIQACR ALNNKNCQALRAKPKVYIIQACRGEQRDPG ALRAKPKVYIIQACRGEQRDPGETVGGDEI K V Y C R G 1 1 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 1 1 0 0 8 0 1021.5379 P31944 P31944 126 133 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 7.4741E-14 181.42 By MS/MS 10 0 1 1 6942600 6942600 0 0 15371 723 16119 67279 56747 56747 1 12648000 0 0 VYNENLVHMIEHAQK ENLELMSQHGCNAWKVYNENLVHMIEHAQK VYNENLVHMIEHAQKELQKLRKHIQDLNWQ K V Y Q K E 1 0 2 0 0 1 2 0 2 1 1 1 1 0 0 0 0 0 1 2 0 0 15 0 1823.8989 O75934 O75934 137 151 BCAS2 Pre-mRNA-splicing factor SPF27 yes yes 2 0.00015528 151.99 By MS/MS 6.5 0.5 1 1 2 19056000 0 0 19056000 15372 290 16120 67280;67281 56748 56748 1 0 0 3260300 VYNVTQHAVGIVVNK QKGMPHKCYHGKTGRVYNVTQHAVGIVVNK VYNVTQHAVGIVVNKQVKGKILAKRINVRI R V Y N K Q 1 0 2 0 0 1 0 1 1 1 0 1 0 0 0 0 1 0 1 5 0 0 15 0 1639.9046 P46778 P46778 64 78 RPL21 60S ribosomal protein L21 yes yes 2;3 2.1925E-45 218.62 By MS/MS By MS/MS By MS/MS 7.71 1.28 2 6 2 2 2 2 3 9 728810000 14683000 132000000 582130000 15373 829 16121 67282;67283;67284;67285;67286;67287;67288;67289;67290;67291;67292;67293;67294;67295 56749;56750;56751;56752;56753;56754;56755;56756;56757;56758;56759 56756 11 31645000 74642000 142710000 VYNYMNAVER LEEIKSRKQEEERGRVYNYMNAVERDLAAL EERGRVYNYMNAVERDLAALRQGMGLSRRS R V Y E R D 1 1 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 2 2 0 0 10 0 1257.5812 Q69YQ0 Q69YQ0 807 816 SPECC1L Cytospin-A yes yes 2 0.016206 91.087 By MS/MS 2 0 1 1 5674900 0 5674900 0 15374 1469 16122 67296 56760 56760 0 0 2555500 0 VYNYNHLMPTR KKKIAKRSKIKSFVKVYNYNHLMPTRYSVD SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD K V Y T R Y 0 1 2 0 0 0 0 0 1 0 1 0 1 0 1 0 1 0 2 1 0 0 11 0 1406.6765 P61353 P61353 74 84 RPL27 60S ribosomal protein L27 yes yes 2;3 2.4052E-13 175.73 By MS/MS By MS/MS 6.07 2.43 1 1 1 1 1 4 4 1 4 10 393450000 0 80298000 313150000 15375 993 16123 67297;67298;67299;67300;67301;67302;67303;67304;67305;67306;67307;67308;67309;67310 56761;56762;56763;56764;56765;56766;56767;56768 56766 7 0 39512000 52399000 VYSLFLDESR RKRKGTEVQVDDIKRVYSLFLDESRSTQYM DDIKRVYSLFLDESRSTQYMKEYQDAFLFN R V Y S R S 0 1 0 1 0 0 1 0 0 0 2 0 0 1 0 2 0 0 1 1 0 0 10 0 1227.6136 Q9Y230 Q9Y230 429 438 RUVBL2 RuvB-like 2 yes yes 2 8.4369E-05 147.51 By MS/MS By MS/MS 4.33 0.471 2 1 1 2 64277000 0 3748700 60529000 15376 2228 16124 67311;67312;67313 56769;56770 56770 2 0 1244100 9562300 VYSTALSSFLTK GPQAASCLDLNLVTRVYSTALSSFLTKRNS VTRVYSTALSSFLTKRNSPLTVPMFLSLFS R V Y T K R 1 0 0 0 0 0 0 0 0 0 2 1 0 1 0 3 2 0 1 1 0 0 12 0 1315.7024 Q9BQG0 Q9BQG0 977 988 MYBBP1A Myb-binding protein 1A yes yes 2 2.7424E-05 151.22 By matching By MS/MS By MS/MS 1.71 0.7 3 3 1 2 2 3 94642000 4874400 37217000 52550000 15377 1885 16125 67314;67315;67316;67317;67318;67319;67320 56771;56772;56773;56774 56774 4 5789700 17069000 11453000 VYSVLSDR GDKEDATRRFQILGKVYSVLSDREQRAVYD RFQILGKVYSVLSDREQRAVYDEQGTVDED K V Y D R E 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 2 0 0 8 0 937.4869 Q8WXX5 Q8WXX5 65 72 DNAJC9 DnaJ homolog subfamily C member 9 yes yes 2 0.00021523 138.55 By MS/MS 6 0 1 1 19897000 0 0 19897000 15378 1698 16126 67321 56775 56775 1 0 0 2976800 VYTDVNTHRPR ______________________________ SRARVYTDVNTHRPREYWDYESHVVEWGNQ R V Y P R E 0 2 1 1 0 0 0 0 1 0 0 0 0 0 1 0 2 0 1 2 0 0 11 1 1356.6898 P68400;Q8NEV1 P68400 11 21 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 3 0.011505 73.781 By matching By MS/MS By matching 5 0.816 1 1 1 1 1 1 1950700 660890 918080 371680 15379 1080 16127 67322;67323;67324 56776 56776 1 515610 236650 55608 VYTLSVSGDR PRTPCNAGTFSQPEKVYTLSVSGDRLIVGT SQPEKVYTLSVSGDRLIVGTAGRRVLVWDL K V Y D R L 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 2 1 0 1 2 0 0 10 0 1095.556 O43684 O43684 140 149 BUB3 Mitotic checkpoint protein BUB3 yes yes 2 7.2839E-11 167.33 By MS/MS By MS/MS 5.6 1.02 1 1 2 1 2 3 49655000 0 12797000 36859000 15380 209 16128 67325;67326;67327;67328;67329 56777;56778;56779;56780 56778 4 0 4372100 5488400 VYTVDLGR SLEVSQGPGLLNDTKVYTVDLGRTVTINCP GLLNDTKVYTVDLGRTVTINCPFKTENAQK K V Y G R T 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 2 0 0 8 0 921.49198 P01833 P01833 139 146 PIGR Polymeric immunoglobulin receptor;Secretory component yes yes 2 0.0053842 99.375 By MS/MS By matching 2.25 0.829 1 1 2 3 1 34346000 32778000 1568600 0 15381 379 16129 67330;67331;67332;67333 56781 56781 1 37093000 668690 0 VYVGNLGNNGNK ______________________________ DCKVYVGNLGNNGNKTELERAFGYYGPLRS K V Y N K T 0 0 4 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 1 2 0 0 12 0 1247.6258 P84103 P84103 12 23 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2 0.00012305 138.1 By MS/MS By MS/MS 8.6 1.36 2 1 2 3 2 192190000 0 89267000 102930000 15382 1113 16130 67334;67335;67336;67337;67338 56782;56783;56784 56782 3 0 64568000 32940000 VYVGNLGNNGNKTELER ______________________________ VGNLGNNGNKTELERAFGYYGPLRSVWVAR K V Y E R A 0 1 4 0 0 0 2 3 0 0 2 1 0 0 0 0 1 0 1 2 0 0 17 1 1875.9439 P84103 P84103 12 28 SRSF3 Serine/arginine-rich splicing factor 3 yes yes 2;3 8.3853E-10 168.41 By MS/MS By MS/MS 7 0 4 2 2 65246000 0 48934000 16312000 15383 1113 16131 67339;67340;67341;67342 56785;56786;56787 56785 3 0 28098000 2894400 VYVGNLGTGAGK ______________________________ ETKVYVGNLGTGAGKGELERAFSYYGPLRT K V Y G K G 1 0 1 0 0 0 0 4 0 0 1 1 0 0 0 0 1 0 1 2 0 0 12 0 1134.6033 Q16629 Q16629 13 24 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2 0.00011614 138.66 By matching By MS/MS By MS/MS 5.33 2.98 1 1 1 2 2 2 1 2 6 440800000 2489000 124610000 313710000 15384 1392 16132 67343;67344;67345;67346;67347;67348;67349;67350;67351 56788;56789;56790;56791;56792;56793 56789 6 4534400 42615000 104960000 VYVGNLGTGAGKGELER ______________________________ VGNLGTGAGKGELERAFSYYGPLRTVWIAR K V Y E R A 1 1 1 0 0 0 2 5 0 0 2 1 0 0 0 0 1 0 1 2 0 0 17 1 1718.8951 Q16629 Q16629 13 29 SRSF7 Serine/arginine-rich splicing factor 7 yes yes 2;3 1.1735E-35 207.12 By MS/MS By matching 7 1.73 3 1 3 1 84268000 0 78764000 5504500 15385 1392 16133 67352;67353;67354;67355 56794;56795;56796 56795 3 0 58127000 823530 VYVGSIYYELGEDTIR SMAAQRQRALAIMCRVYVGSIYYELGEDTI YVGSIYYELGEDTIRQAFAPFGPIKSIDMS R V Y I R Q 0 1 0 1 0 0 2 2 0 2 1 0 0 0 0 1 1 0 3 2 0 0 16 0 1875.9254 Q9UHX1 Q9UHX1 131 146 PUF60 Poly(U)-binding-splicing factor PUF60 yes yes 2 3.4998E-05 125.28 By MS/MS 3.5 0.5 1 1 2 14948000 0 0 14948000 15386 2158 16134 67356;67357 56797;56798 56798 2 0 0 2557900 VYVPALIFGQLLTSSNYDDDEK NNGKGIPVVEHKVEKVYVPALIFGQLLTSS FGQLLTSSNYDDDEKKVTGGRNGYGAKLCN K V Y E K K 1 0 1 3 0 1 1 1 0 1 3 1 0 1 1 2 1 0 2 2 0 0 22 0 2486.2217 Q02880 Q02880 156 177 TOP2B DNA topoisomerase 2-beta yes yes 3 0.036774 30.869 By MS/MS 2 0.816 1 1 1 3 5628300 0 0 5628300 15387 1150 16135 67358;67359;67360 56799 56799 1 0 0 1237600 VYVPALIFGQLLTSSNYDDDEKK NNGKGIPVVEHKVEKVYVPALIFGQLLTSS GQLLTSSNYDDDEKKVTGGRNGYGAKLCNI K V Y K K V 1 0 1 3 0 1 1 1 0 1 3 2 0 1 1 2 1 0 2 2 0 0 23 1 2614.3166 Q02880 Q02880 156 178 TOP2B DNA topoisomerase 2-beta yes yes 3 0.0021609 48.641 By MS/MS 1 0 1 1 19873000 0 0 19873000 15388 1150 16136 67361 56800 56800 1 0 0 4282000 WANFHLENSGWQK LEELMKLSPEELLLRWANFHLENSGWQKIN LRWANFHLENSGWQKINNFSADIKDSKAYF R W A Q K I 1 0 2 0 0 1 1 1 1 0 1 1 0 1 0 1 0 2 0 0 0 0 13 0 1615.7532 P13797 P13797 276 288 PLS3 Plastin-3 yes yes 3 0.0090658 68.83 By matching By MS/MS 3.33 0.471 2 1 1 2 10561000 2885900 7675000 0 15389 551 16137 67362;67363;67364 56801 56801 1 3329700 3108100 0 WAQPDTAPLPVPANIR SQCTSSSQLDETSHRWAQPDTAPLPVPANI AQPDTAPLPVPANIRFSIWISFFEIYNELL R W A I R F 3 1 1 1 0 1 0 0 0 1 1 0 0 0 4 0 1 1 0 1 0 0 16 0 1744.9261 O95235 O95235 283 298 KIF20A Kinesin-like protein KIF20A yes yes 2 0.020612 67.776 By MS/MS 2 0 1 1 2508000 0 2508000 0 15390 313 16138 67365 56802 56802 0 0 1129400 0 WARPPISMNFEVPFAPSGLK ISAEIELLPTNDKKKWARPPISMNFEVPFA ISMNFEVPFAPSGLKVRYLKVFEPKLNYSD K W A L K V 2 1 1 0 0 0 1 1 0 1 1 1 1 2 4 2 0 1 0 1 0 0 20 1 2243.1561 Q96CW1 Q96CW1 381 400 AP2M1 AP-2 complex subunit mu yes yes 3 2.1549E-06 96.391 By MS/MS By MS/MS 5 0 2 1 1 23313000 0 15666000 7647300 15391 1762 16139 67366;67367 56803;56804 56804 2 0 4038200 1066700 WATCATVKVTEATITGLIQGEEYSFRVSAQNEK ILGYIVEMQTKGSDKWATCATVKVTEATIT QGEEYSFRVSAQNEKGISDPRQLSVPVIAK K W A E K G 4 1 1 0 1 2 4 2 0 2 1 2 0 1 0 2 5 1 1 3 0 0 33 2 3686.825 Q8WZ42 Q8WZ42 23022 23054 TTN Titin yes yes 4 0.069626 18.27 By MS/MS 5 0.816 1 1 1 3 40380000 0 0 40380000 15392 1703 16140 67368;67369;67370 56805 56805 1 0 0 5780000 WCAVSEHEATK AVLGLCLAVPDKTVRWCAVSEHEATKCQSF KTVRWCAVSEHEATKCQSFRDHMKSVIPSD R W C T K C 2 0 0 0 1 0 2 0 1 0 0 1 0 0 0 1 1 1 0 1 0 0 11 0 1316.5819 P02787 P02787 27 37 TF Serotransferrin yes yes 3 0.024657 59.739 By MS/MS 9 0 1 1 8314000 8314000 0 0 15393 399 16141 67371 56806 56806 1 4666700 0 0 WDETPASQMGGSTPVLTPGK IGETPTPGASKRKSRWDETPASQMGGSTPV ASQMGGSTPVLTPGKTPIGTPAMNMATPTP R W D G K T 1 0 0 1 0 1 1 3 0 0 1 1 1 0 3 2 3 1 0 1 0 0 20 0 2057.9728 O75533 O75533 338 357 SF3B1 Splicing factor 3B subunit 1 yes yes 2 2.3649E-14 157.2 By MS/MS By MS/MS 2 0 2 1 1 16491000 0 3691400 12799000 15394 270 16142 67372;67373 56807;56808 56807 2 0 1662300 2892400 WDLGLNK KKLKESQTQDNITVRWDLGLNKKRIAYFTL TQDNITVRWDLGLNKKRIAYFTLPKTDSGN R W D N K K 0 0 1 1 0 0 0 1 0 0 2 1 0 0 0 0 0 1 0 0 0 0 7 0 844.4443 Q92900 Q92900 333 339 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.062189 74.396 By MS/MS 2 0 1 1 2490500 0 2490500 0 15395 1729 16143 67374 56809 56809 1 0 1121500 0 WDNLIYYALGGHK VGSKDMSTWVFGAERWDNLIYYALGGHKDA ERWDNLIYYALGGHKDAIVACFFESNSLDL R W D H K D 1 0 1 1 0 0 0 2 1 1 2 1 0 0 0 0 0 1 2 0 0 0 13 0 1548.7725 Q15269 Q15269 176 188 PWP2 Periodic tryptophan protein 2 homolog yes yes 3 0.028945 53.448 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 4841100 0 1049400 3791700 15396 1352 16144 67375;67376;67377 56810;56811 56810 2 0 472550 844150 WDPTANEDPEWILVEK GDGFVSLEEFLGDYRWDPTANEDPEWILVE DPTANEDPEWILVEKDRFVNDYDKDNDGRL R W D E K D 1 0 1 2 0 0 3 0 0 1 1 1 0 0 2 0 1 2 0 1 0 0 16 0 1940.9156 Q14257 Q14257 217 232 RCN2 Reticulocalbin-2 yes yes 2 0.012736 68.83 By MS/MS 4.5 0.5 1 1 2 9399500 0 0 9399500 15397 1296 16145 67378;67379 56812 56812 1 0 0 1369900 WDQTADQTPGATPK NGAAASQPPSKRKRRWDQTADQTPGATPKK RWDQTADQTPGATPKKLSSWDQAETPGHTP R W D P K K 2 0 0 2 0 2 0 1 0 0 0 1 0 0 2 0 3 1 0 0 0 0 14 0 1514.7001 O75533 O75533 200 213 SF3B1 Splicing factor 3B subunit 1 yes yes 2 0.00060801 143.24 By MS/MS 2 0 1 1 4762200 0 4762200 0 15398 270 16146 67380 56813 56813 1 0 2144500 0 WDVLIQQATQCLNR MRVMGLRRQRNYAGRWDVLIQQATQCLNRL RWDVLIQQATQCLNRLIQIAARKKRNYILD R W D N R L 1 1 1 1 1 3 0 0 0 1 2 0 0 0 0 0 1 1 0 1 0 0 14 0 1743.8726 Q9BUJ2 Q9BUJ2 477 490 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 2 0.00059957 141.1 By MS/MS 2 0 1 1 5941800 0 0 5941800 15399 1907 16147 67381 56814 56814 1 0 0 1342700 WEAEPVYVQR AWVPFDPAAQITKQKWEAEPVYVQRAKAYL ITKQKWEAEPVYVQRAKAYLEEECPATLRK K W E Q R A 1 1 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 1 1 2 0 0 10 0 1275.6248 P25311 P25311 168 177 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 0.0004895 135.83 By MS/MS By matching 3.4 2.2 2 3 1 1 1 1 1 9 1 59430000 58406000 1024500 0 15400 656 16148 67382;67383;67384;67385;67386;67387;67388;67389;67390;67391 56815;56816;56817;56818 56815 4 59470000 461360 0 WEAERDDWLHNR NAMANKDNASLKQLRWEAERDDWLHNRDAK QLRWEAERDDWLHNRDAKSIIKKKKHFKKK R W E N R D 1 2 1 2 0 0 2 0 1 0 1 0 0 0 0 0 0 2 0 0 0 0 12 1 1625.7335 Q03701 Q03701 1015 1026 CEBPZ CCAAT/enhancer-binding protein zeta yes yes 4 0.03107 54.772 By MS/MS 1.5 0.5 1 1 2 7979900 0 0 7979900 15401 1157 16149 67392;67393 56819 56819 1 0 0 1783400 WELLQQMNVGTR KVRFLEQQNQVLQTKWELLQQMNVGTRPIN QTKWELLQQMNVGTRPINLEPIFQGYIDSL K W E T R P 0 1 1 0 0 2 1 1 0 0 2 0 1 0 0 0 1 1 0 1 0 0 12 0 1473.7398 CON__P35908;CON__P35908v2;P35908 CON__P35908 216 227 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 2.6545E-25 199.67 By MS/MS By MS/MS 5.91 2.15 1 1 2 3 2 2 6 5 58198000 28098000 0 30100000 + 15402 65;66 16150;16151 67394;67395;67396;67397;67398;67399;67400;67401;67402;67403;67404 56820;56821;56822;56823;56824;56825 56823 54 6 21739000 0 5927900 WELLQQMNVGTRPINLEPIFQGYIDSLKR KVRFLEQQNQVLQTKWELLQQMNVGTRPIN NLEPIFQGYIDSLKRYLDGLTAERTSQNSE K W E K R Y 0 2 2 1 0 3 2 2 0 3 4 1 1 1 2 1 1 1 1 1 0 0 29 2 3457.818 CON__P35908;CON__P35908v2;P35908 CON__P35908 216 244 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 4 4.7544E-13 89.181 By MS/MS 2 0.707 1 2 1 4 48771000 0 0 48771000 + 15403 65;66 16152;16153 67405;67406;67407;67408 56826;56827;56828;56829 56829 54 4 0 0 10614000 WELLQQVDTSTR KVRFLEQQNQVLQTKWELLQQVDTSTRTHN QTKWELLQQVDTSTRTHNLEPYFESFINNL K W E T R T 0 1 0 1 0 2 1 0 0 0 2 0 0 0 0 1 2 1 0 1 0 0 12 0 1474.7416 P04264;CON__P04264 P04264 212 223 KRT1 Keratin, type II cytoskeletal 1 yes no 2 1.0916E-126 278.03 By MS/MS By MS/MS By MS/MS 5.21 2.79 5 3 4 4 4 5 4 3 3 3 16 10 12 10217000000 6534900000 508880000 3173600000 + 15404 413 16154 67409;67410;67411;67412;67413;67414;67415;67416;67417;67418;67419;67420;67421;67422;67423;67424;67425;67426;67427;67428;67429;67430;67431;67432;67433;67434;67435;67436;67437;67438;67439;67440;67441;67442;67443;67444;67445;67446 56830;56831;56832;56833;56834;56835;56836;56837;56838;56839;56840;56841;56842;56843;56844;56845;56846;56847;56848;56849;56850;56851;56852;56853;56854;56855;56856;56857;56858;56859;56860;56861;56862;56863;56864;56865;56866;56867;56868;56869;56870;56871;56872;56873;56874;56875;56876;56877;56878;56879;56880;56881;56882 56870 53 5675000000 238930000 732110000 WESGYNTR GYRGISLANWMCLAKWESGYNTRATNYNAG NWMCLAKWESGYNTRATNYNAGDRSTDYGI K W E T R A 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 1 1 1 1 0 0 0 8 0 1011.441 P61626 P61626 52 59 LYZ Lysozyme C yes yes 2 0.0018003 110.81 By MS/MS 5.5 2.87 1 1 1 1 1 1 1 1 1 1 10 1019400000 1019400000 0 0 15405 997 16155 67447;67448;67449;67450;67451;67452;67453;67454;67455;67456 56883;56884;56885;56886;56887;56888;56889;56890 56884 8 1169800000 0 0 WEWLVNQHR LQSKYIGTGHADTTKWEWLVNQHRDSYCSY HADTTKWEWLVNQHRDSYCSYMGHFDLLNY K W E H R D 0 1 1 0 0 1 1 0 1 0 1 0 0 0 0 0 0 2 0 1 0 0 9 0 1266.6258 Q9BWJ5 Q9BWJ5 29 37 SF3B5 Splicing factor 3B subunit 5 yes yes 2 4.2633E-07 155.51 By MS/MS 9 0 1 1 12232000 0 0 12232000 15406 1925 16156 67457 56891 56891 1 0 0 3907500 WFEENASQSTVK IKVLQSALAAIRHARWFEENASQSTVKVLI HARWFEENASQSTVKVLIRLLKDLRIRFPG R W F V K V 1 0 1 0 0 1 2 0 0 0 0 1 0 1 0 2 1 1 0 1 0 0 12 0 1424.6572 Q12905 Q12905 210 221 ILF2 Interleukin enhancer-binding factor 2 yes yes 2 2.9997E-05 150.66 By MS/MS By MS/MS By MS/MS 5 1.15 1 2 3 2 1 1 4 4 345870000 14186000 98735000 232950000 15407 1210 16157 67458;67459;67460;67461;67462;67463;67464;67465;67466 56892;56893;56894;56895;56896;56897 56894 6 11365000 27991000 33464000 WFGFLEAQQAFQSVGTK QEQLKQKKAPVHVKRWFGFLEAQQAFQSVG GFLEAQQAFQSVGTKWDVSTTKARVAPEKK R W F T K W 2 0 0 0 0 3 1 2 0 0 1 1 0 3 0 1 1 1 0 1 0 0 17 0 1942.9577 P07814 P07814 150 166 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 1.0842E-05 137.16 By MS/MS 1 0 1 1 2299400 0 0 2299400 15408 465 16158 67467 56898 56898 1 0 0 495450 WFNGQPIHAELSPVTDFR REEDAEKAVIDLNNRWFNGQPIHAELSPVT GQPIHAELSPVTDFREACCRQYEMGECTRG R W F F R E 1 1 1 1 0 1 1 1 1 1 1 0 0 2 2 1 1 1 0 1 0 0 18 0 2113.0381 P0DN76;Q01081 P0DN76 134 151 U2AF1 Splicing factor U2AF 35 kDa subunit yes no 2;3 2.996E-40 211.83 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 145540000 0 14365000 131180000 15409 502 16159 67468;67469;67470;67471 56899;56900;56901;56902;56903 56902 5 0 4972700 19819000 WFTSQVIR QKEGLMLDSHEELYKWFTSQVIRNLHVVFT SHEELYKWFTSQVIRNLHVVFTMNPSSEGL K W F I R N 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 1 1 1 0 1 0 0 8 0 1035.5502 Q14204 Q14204 3053 3060 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 yes yes 2 0.066349 73.616 By MS/MS 1 0 1 1 0 0 0 0 15410 1292 16160 67472 56904 56904 1 0 0 0 WFWLLPVK VRVIQLLKINNSKHRWFWLLPVKQSGVPLA INNSKHRWFWLLPVKQSGVPLAKGTLITHC R W F V K Q 0 0 0 0 0 0 0 0 0 0 2 1 0 1 1 0 0 2 0 1 0 0 8 0 1087.6219 Q9H583 Q9H583 160 167 HEATR1 HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed yes yes 2 0.017186 86.512 By MS/MS 1 0 1 1 11503000 0 0 11503000 15411 1984 16161 67473 56905 56905 1 0 0 2478500 WFYIASAFR PVPITNATLDQITGKWFYIASAFRNEEYNK DQITGKWFYIASAFRNEEYNKSVQEIQATF K W F F R N 2 1 0 0 0 0 0 0 0 1 0 0 0 2 0 1 0 1 1 0 0 0 9 0 1159.5815 P02763;P19652 P02763 43 51 ORM1;ORM2 Alpha-1-acid glycoprotein 1;Alpha-1-acid glycoprotein 2 no no 2 1.9375E-16 176.29 By MS/MS 9.5 0.5 1 1 2 34419000 34419000 0 0 15412 394;611 16162 67474;67475 56906 56906 1 20063000 0 0 WGDAGAEYVVESTGVFTTMEK NPITIFQERDPSKIKWGDAGAEYVVESTGV EYVVESTGVFTTMEKAGAHLQGGAKRVIIS K W G E K A 2 0 0 1 0 0 3 3 0 0 0 1 1 1 0 1 3 1 1 3 0 0 21 0 2276.0307 P04406 P04406 87 107 GAPDH Glyceraldehyde-3-phosphate dehydrogenase yes yes 3 0.0032824 52.464 By MS/MS 6 0 1 1 2676300 0 0 2676300 15413 415 16163 67476 56907 56907 1 0 0 400410 WGDEHIPGSPYR SYLLKDKGEYTLVVKWGDEHIPGSPYRVVV VVKWGDEHIPGSPYRVVVP___________ K W G Y R V 0 1 0 1 0 0 1 2 1 1 0 0 0 0 2 1 0 1 1 0 0 0 12 0 1412.6473 P21333 P21333 2632 2643 FLNA Filamin-A yes yes 3 0.042258 49.081 By MS/MS 1 0 1 1 13484000 0 0 13484000 15414 623 16164 67477 56908 56908 1 0 0 2905400 WGDYDSHDIER DSTTTQKYWIDIQLRWGDYDSHDIERYARA IQLRWGDYDSHDIERYARAKFLDYTTDNMS R W G E R Y 0 1 0 3 0 0 1 1 1 1 0 0 0 0 0 1 0 1 1 0 0 0 11 0 1391.5742 Q6P2Q9 Q6P2Q9 1668 1678 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 0.0026321 87.363 By MS/MS 1 0 2 2 39961000 0 0 39961000 15415 1490 16165 67478;67479 56909;56910 56910 2 0 0 8610200 WGRDDIENIAR WNKRDFNQFIKANEKWGRDDIENIAREVEG ANEKWGRDDIENIAREVEGKTPEEVIEYSA K W G A R E 1 2 1 2 0 0 1 1 0 2 0 0 0 0 0 0 0 1 0 0 0 0 11 1 1343.6582 O60264 O60264 860 870 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 yes yes 2;3 2.2442E-46 226.29 By MS/MS 1.5 0.5 2 2 4 58149000 0 0 58149000 15416 223 16166 67480;67481;67482;67483 56911;56912;56913 56913 3 0 0 13005000 WGTLTDCVVMR SFETTDDSLREHFEKWGTLTDCVVMRDPQT HFEKWGTLTDCVVMRDPQTKRSRGFGFVTY K W G M R D 0 1 0 1 1 0 0 1 0 0 1 0 1 0 0 0 2 1 0 2 0 0 11 0 1336.6268 P51991 P51991 58 68 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 yes yes 2 2.0064E-09 164.96 By matching By MS/MS 5.2 0.748 1 2 2 3 2 46091000 0 6276500 39814000 15417 900 16167 67484;67485;67486;67487;67488 56914;56915 56914 2 0 1793600 5620900 WHEEVEIYR VKQKVQPYLDEFQKKWHEEVEIYRQKVAPL DEFQKKWHEEVEIYRQKVAPLGEEFREGAR K W H Y R Q 0 1 0 0 0 0 3 0 1 1 0 0 0 0 0 0 0 1 1 1 0 0 9 0 1259.5935 CON__P15497 CON__P15497 131 139 yes yes 2;3 0.00046714 132.08 By MS/MS By matching By MS/MS 8 0.853 4 3 4 4 1 6 230660000 59542000 1090900 170030000 + 15418 59 16168 67489;67490;67491;67492;67493;67494;67495;67496;67497;67498;67499 56916;56917;56918;56919;56920;56921;56922;56923 56919 8 57139000 626380 32932000 WHPDKNPENKEEAER SPEDIKKAYRKLALKWHPDKNPENKEEAER WHPDKNPENKEEAERKFKQVAEAYEVLSDA K W H E R K 1 1 2 1 0 0 4 0 1 0 0 2 0 0 2 0 0 1 0 0 0 0 15 2 1877.8656 O75190;Q8WWF6;Q7Z6W7 O75190 30 44 DNAJB6;DNAJB3;DNAJB7 DnaJ homolog subfamily B member 6;DnaJ homolog subfamily B member 3;DnaJ homolog subfamily B member 7 yes no 3;4 0.0018983 78.285 By MS/MS 6.25 0.829 1 1 2 4 12282000 0 0 12282000 15419 247 16169 67500;67501;67502;67503 56924;56925;56926;56927 56927 3 0 0 1983000 WHQVETTPLREEK SDLKTHNVHVEIEQRWHQVETTPLREEKQV QRWHQVETTPLREEKQVPIAPVHLSSEDGG R W H E K Q 0 1 0 0 0 1 3 0 1 0 1 1 0 0 1 0 2 1 0 1 0 0 13 1 1651.8318 Q6WCQ1 Q6WCQ1 640 652 MPRIP Myosin phosphatase Rho-interacting protein yes yes 3 0.0018125 92.295 By MS/MS 2 0 1 1 5662000 0 0 5662000 15420 1507 16170 67504 56928 56928 1 0 0 1279500 WILDTDTFNEWMNEEDYEVNDDKNPVSR EDAPTPEKPRKVHAKWILDTDTFNEWMNEE EEDYEVNDDKNPVSRRKKISAKTLTDEVNS K W I S R R 0 1 4 5 0 0 4 0 0 1 1 1 1 1 1 1 2 2 1 2 0 0 28 1 3473.4994 Q8TAQ2 Q8TAQ2 241 268 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 3 1.597E-38 145.14 By MS/MS 2 0 1 1 1451900 0 0 1451900 15421 1653 16171 67505 56929 56929 1 0 0 328110 WISIMTER LYDAGVKRKGTDVPKWISIMTERSVPHLQK KGTDVPKWISIMTERSVPHLQKVFDRYKSY K W I E R S 0 1 0 0 0 0 1 0 0 2 0 0 1 0 0 1 1 1 0 0 0 0 8 0 1034.5219 P07355;A6NMY6 P07355 213 220 ANXA2;ANXA2P2 Annexin A2;Putative annexin A2-like protein yes no 2 3.7276E-10 129.4 By MS/MS By MS/MS By MS/MS 7 1.22 2 1 1 1 1 2 54023000 0 6471700 47551000 15422 459 16172 67506;67507;67508;67509 56930;56931;56932 56930 3 0 2240300 7175300 WISSGEYIQMSGR VLFTNARKFDGKDFRWISSGEYIQMSGRAG FRWISSGEYIQMSGRAGRRGMDDRGIVILM R W I G R A 0 1 0 0 0 1 1 2 0 2 0 0 1 0 0 3 0 1 1 0 0 0 13 0 1512.7031 P42285 P42285 511 523 SKIV2L2 Superkiller viralicidic activity 2-like 2 yes yes 2 0.0044621 101.93 By MS/MS By matching 2.5 0.5 1 1 1 1 7417300 0 4841200 2576100 15423 800 16173 67510;67511 56933 56933 1 0 2180000 499650 WIVNLIR MLADKLNMTPEEAERWIVNLIRNARLDAKI MTPEEAERWIVNLIRNARLDAKIDSKLGHV R W I I R N 0 1 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 1 0 1 0 0 7 0 912.55452 P60228 P60228 370 376 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 2 0.0063833 126.05 By matching By MS/MS By MS/MS 4.67 0.471 1 2 1 1 1 11078000 482600 5919100 4676400 15424 963 16174 67512;67513;67514 56934;56935 56934 2 376510 1525800 652270 WIYEDVER TVDELKDWIKFAQKRWIYEDVERQWKGHDL IKFAQKRWIYEDVERQWKGHDLNEDGLVSW R W I E R Q 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 1 1 1 0 0 8 0 1108.5189 O43852 O43852 104 111 CALU Calumenin yes yes 2 7.9973E-06 154.35 By MS/MS 5 0 1 1 7382000 0 0 7382000 15425 217 16175 67515 56936 56936 1 0 0 1029700 WKDSDEADLVLAK IGATDSSGELMFLMKWKDSDEADLVLAKEA MKWKDSDEADLVLAKEANMKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 1 0 1 0 1 0 0 13 1 1488.746 Q13185 Q13185 142 154 CBX3 Chromobox protein homolog 3 yes yes 2;3 0.00010312 122.46 By MS/MS 7.75 0.829 2 1 1 4 295280000 0 0 295280000 15426 1228 16176 67516;67517;67518;67519 56937;56938;56939 56938 3 0 0 53892000 WKDTDEADLVLAK IGATDSCGDLMFLMKWKDTDEADLVLAKEA MKWKDTDEADLVLAKEANVKCPQIVIAFYE K W K A K E 2 0 0 3 0 0 1 0 0 0 2 2 0 0 0 0 1 1 0 1 0 0 13 1 1502.7617 P45973 P45973 142 154 CBX5 Chromobox protein homolog 5 yes yes 2;3 0.0022045 134.75 By matching By MS/MS 6.8 0.4 1 4 2 3 203840000 0 3253100 200590000 15427 820 16177 67520;67521;67522;67523;67524 56940;56941;56942 56942 3 0 1867900 35359000 WLAGDVPAAR CPKAEVLWLMGAKSKWLAGDVPAARSILAL GAKSKWLAGDVPAARSILALAFQANPNSEE K W L A R S 3 1 0 1 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 10 0 1054.556 O94906 O94906 619 628 PRPF6 Pre-mRNA-processing factor 6 yes yes 2 0.026237 79.474 By MS/MS By MS/MS 2.33 0.471 2 1 2 1 25203000 0 10656000 14547000 15428 305 16178 67525;67526;67527 56943;56944 56944 2 0 4659500 3287300 WLAGLPLQLAHLGSR LRSCRFRYRSKVLSRWLAGLPLQLAHLGSR WLAGLPLQLAHLGSRNPELSTQLIDIIHTA R W L S R N 2 1 0 0 0 1 0 2 1 0 5 0 0 0 1 1 0 1 0 0 0 0 15 0 1630.9307 Q9NXF1 Q9NXF1 551 565 TEX10 Testis-expressed sequence 10 protein yes yes 3 0.00028788 94.023 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 16364000 0 4659600 11705000 15429 2089 16179 67528;67529;67530 56945;56946;56947 56947 3 0 2098300 2476500 WLDLKDNPLDPVLAK LVTLPVSFAQLKNLKWLDLKDNPLDPVLAK WLDLKDNPLDPVLAKVAGDCLDEKQCKQCA K W L A K V 1 0 1 3 0 0 0 0 0 0 4 2 0 0 2 0 0 1 0 1 0 0 15 1 1735.9509 Q96AG4 Q96AG4 112 126 LRRC59 Leucine-rich repeat-containing protein 59 yes yes 2;3 0.00028411 160.22 By MS/MS By MS/MS 6 0 4 2 2 77269000 0 12591000 64678000 15430 1751 16180 67531;67532;67533;67534 56948;56949 56949 2 0 4358400 9676600 WLEVEIAPDIR QTVTCFLKKYNVVKKWLEVEIAPDIRGRIP VVKKWLEVEIAPDIRGRIPLLLTSLSFKVL K W L I R G 1 1 0 1 0 0 2 0 0 2 1 0 0 0 1 0 0 1 0 1 0 0 11 0 1339.7136 Q14690 Q14690 1165 1175 PDCD11 Protein RRP5 homolog yes yes 2 0.0003282 129.38 By MS/MS 1.5 0.5 1 1 2 7562100 0 0 7562100 15431 1314 16181 67535;67536 56950;56951 56950 2 0 0 1656800 WLGNLLAR VWLFFMRGITPLLERWLGNLLARQFEGRHS ITPLLERWLGNLLARQFEGRHSKGVAKTVT R W L A R Q 1 1 1 0 0 0 0 1 0 0 3 0 0 0 0 0 0 1 0 0 0 0 8 0 941.54469 Q6P2Q9 Q6P2Q9 651 658 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0049003 100.07 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 34753000 984860 9171700 24596000 15432 1490 16182 67537;67538;67539;67540 56952;56953;56954 56954 3 984860 4483000 5320700 WLLLTGISAQQNR AGCQIINYRTDAKQKWLLLTGISAQQNRVV QKWLLLTGISAQQNRVVGAMQLYSVDRKVS K W L N R V 1 1 1 0 0 2 0 1 0 1 3 0 0 0 0 1 1 1 0 0 0 0 13 0 1498.8256 Q00610 Q00610 164 176 CLTC Clathrin heavy chain 1 yes yes 2;3 4.0965E-17 189.18 By MS/MS By MS/MS 2 1.07 3 2 1 1 3 4 54554000 0 11061000 43494000 15433 1125 16183 67541;67542;67543;67544;67545;67546;67547 56955;56956;56957;56958 56956 4 0 5048000 9433500 WLLWPMLFPVAPR QPLRVQHRALELTGRWLLWPMLFPVAPRDV GRWLLWPMLFPVAPRDVPLLPSDVKLKLYD R W L P R D 1 1 0 0 0 0 0 0 0 0 3 0 1 1 3 0 0 2 0 1 0 0 13 0 1624.8952 Q9HCE1 Q9HCE1 467 479 MOV10 Putative helicase MOV-10 yes yes 2 3.1199E-11 176.79 By MS/MS 3 0.816 1 1 1 3 9309700 0 0 9309700 15434 2011 16184 67548;67549;67550 56959;56960 56959 1 0 0 2054200 WLLYHELVLTTK VFIHPNSSLFEQQPRWLLYHELVLTTKEFM QPRWLLYHELVLTTKEFMRQVLEIESSWLL R W L T K E 0 0 0 0 0 0 1 0 1 0 4 1 0 0 0 0 2 1 1 1 0 0 12 0 1514.8497 O60231 O60231 983 994 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 yes yes 3 0.065582 39.006 By MS/MS 2 0 1 1 1790600 0 0 1790600 15435 221 16185 67551 56961 56961 1 0 0 404630 WLPAGDALLQMITIHLPSPVTAQK KDKEGKPLLKAVMRRWLPAGDALLQMITIH QMITIHLPSPVTAQKYRCELLYEGPPDDEA R W L Q K Y 3 0 0 1 0 2 0 1 1 2 4 1 1 0 3 1 2 1 0 1 0 0 24 0 2599.4196 P13639 P13639 343 366 EEF2 Elongation factor 2 yes yes 3;4 1.2067E-07 82.477 By MS/MS 2.4 1.02 1 2 1 1 5 33559000 0 0 33559000 15436 547 16186 67552;67553;67554;67555;67556 56962;56963;56964 56962 3 0 0 7323300 WLPYEAGQR KGKKKMSAAEAVKEKWLPYEAGQRFLEFQY EAVKEKWLPYEAGQRFLEFQYLTGGLVDPE K W L Q R F 1 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 9 0 1118.5509 P15924 P15924 2717 2725 DSP Desmoplakin yes yes 2 0.0093301 90.308 By matching By MS/MS By MS/MS 2 1.15 3 1 1 1 1 3 2 14749000 1846700 11188000 1713900 15437 572 16187 67557;67558;67559;67560;67561;67562 56965;56966 56965 2 1846700 5304200 279940 WLQDEMFHSDFQHHNK YIEQLKTQMSSCVAKWLQDEMFHSDFQHHN LQDEMFHSDFQHHNKALAVMVDHLESEKEG K W L N K A 0 0 1 2 0 2 1 0 3 0 1 1 1 2 0 1 0 1 0 0 0 0 16 0 2097.9115 Q14008 Q14008 1207 1222 CKAP5 Cytoskeleton-associated protein 5 yes yes 3;4 2.3504E-05 100.56 By MS/MS 1.33 0.471 2 1 3 73104000 0 0 73104000 15438 1279 16188 67563;67564;67565 56967;56968 56968 2 0 0 15898000 WLQDLQEENESLK AVLEEKEKDLANTGKWLQDLQEENESLKAH GKWLQDLQEENESLKAHVQEVAQHNLKEAS K W L L K A 0 0 1 1 0 2 3 0 0 0 3 1 0 0 0 1 0 1 0 0 0 0 13 0 1630.7839 Q86UP2 Q86UP2 896 908 KTN1 Kinectin yes yes 2 2.913E-07 167.12 By MS/MS 1.5 0.5 1 1 2 15473000 0 0 15473000 15439 1549 16189 67566;67567 56969 56969 1 0 0 3434700 WLQDNLTLR RLMRQDIDTQKIQERWLQDNLTLRKRNEEL QKIQERWLQDNLTLRKRNEELKEVEEERKQ R W L L R K 0 1 1 1 0 1 0 0 0 0 3 0 0 0 0 0 1 1 0 0 0 0 9 0 1157.6193 Q92878 Q92878 1017 1025 RAD50 DNA repair protein RAD50 yes yes 2 0.00053109 105.57 By MS/MS 1 0 1 1 0 0 0 0 15440 1726 16190 67568 56970 56970 1 0 0 0 WLQGSQELPR TCLARGFSPKDVLVRWLQGSQELPREKYLT DVLVRWLQGSQELPREKYLTWASRQEPSQG R W L P R E 0 1 0 0 0 2 1 1 0 0 2 0 0 0 1 1 0 1 0 0 0 0 10 0 1212.6251 P01876;P0DOX2;P01877 P01876 264 273 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region no no 2 0.00026673 131.06 By MS/MS By matching 5.14 3.44 1 1 2 1 1 1 6 1 126800000 125510000 1294300 0 15441 386;503 16191 67569;67570;67571;67572;67573;67574;67575 56971;56972;56973;56974 56973 4 103220000 551780 0 WLSAEIEDVKPAK ELKAIEVLRRHRTYRWLSAEIEDVKPAKTV YRWLSAEIEDVKPAKTVNI___________ R W L A K T 2 0 0 1 0 0 2 0 0 1 1 2 0 0 1 1 0 1 0 1 0 0 13 1 1484.7875 Q16795 Q16795 361 373 NDUFA9 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial yes yes 3 0.052261 47.189 By matching By MS/MS 6 0 2 1 1 7032900 819750 0 6213200 15442 1400 16192 67576;67577 56975 56975 1 1091500 0 929560 WLSCETQLPVSFR EPLPPQYFIRVVSDRWLSCETQLPVSFRHL DRWLSCETQLPVSFRHLILPEKYPPPTELL R W L F R H 0 1 0 0 1 1 1 0 0 0 2 0 0 1 1 2 1 1 0 1 0 0 13 0 1621.7923 O75643 O75643 1275 1287 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 2.3214E-17 192.12 By MS/MS 1.5 0.5 1 1 2 13513000 0 0 13513000 15443 277 16193 67578;67579 56976 56976 1 0 0 2925300 WLVEFAPAFFK TTKEYMREVTTIDPRWLVEFAPAFFKVSDP IDPRWLVEFAPAFFKVSDPTKLSKQKKQQR R W L F K V 2 0 0 0 0 0 1 0 0 0 1 1 0 3 1 0 0 1 0 1 0 0 11 0 1353.7121 Q14562 Q14562 1172 1182 DHX8 ATP-dependent RNA helicase DHX8 yes yes 2 0.0095616 92.062 By MS/MS 2 0 1 1 863310 0 863310 0 15444 1304 16194 67580 56977 56977 1 0 388760 0 WLVIDPVPAAVPTQVAGPK REPLTAQQLETTTERWLVIDPVPAAVPTQV DPVPAAVPTQVAGPKGKAPPVPAPARESGN R W L P K G 3 0 0 1 0 1 0 1 0 1 1 1 0 0 4 0 1 1 0 4 0 0 19 0 1957.1037 Q6P1N0 Q6P1N0 806 824 CC2D1A Coiled-coil and C2 domain-containing protein 1A yes yes 2 0.00011707 97.551 By MS/MS By MS/MS 2 0 2 1 1 5946600 0 3553800 2392800 15445 1488 16195 67581;67582 56978;56979 56978 2 0 1600300 540720 WMEANQHSLNILGQK GFAFVEFSHLQDATRWMEANQHSLNILGQK WMEANQHSLNILGQKVSMHYSDPKPKINED R W M Q K V 1 0 2 0 0 2 1 1 1 1 2 1 1 0 0 1 0 1 0 0 0 0 15 0 1767.8726 P98175 P98175 187 201 RBM10 RNA-binding protein 10 yes yes 2 1.088E-07 171.32 By MS/MS 2 0 1 1 7968200 0 0 7968200 15446 1117 16196 67583 56980 56980 1 0 0 1800700 WMEEQAQSLIDK SGRKHKENVKDYYQKWMEEQAQSLIDKTTA YQKWMEEQAQSLIDKTTAAFQQGKIPPTPF K W M D K T 1 0 0 1 0 2 2 0 0 1 1 1 1 0 0 1 0 1 0 0 0 0 12 0 1476.6919 P09234 P09234 41 52 SNRPC U1 small nuclear ribonucleoprotein C yes yes 2 0.001298 114.83 By MS/MS By MS/MS 7 0 2 1 1 28396000 0 3180900 25215000 15447 483 16197 67584;67585 56981;56982 56982 2 0 1826500 4474300 WMGIAFR ECGNDVELSFTKNGKWMGIAFRIQKEALGG LSFTKNGKWMGIAFRIQKEALGGQALYPHV K W M F R I 1 1 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 0 7 0 879.44253 Q9BUJ2 Q9BUJ2 351 357 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 2 0.012551 116.09 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 29283000 0 10604000 18679000 15448 1907 16198 67586;67587;67588;67589;67590 56983;56984;56985;56986;56987 56986 5 0 4387700 4013100 WMIQYNNLNLK VESAKRFLEKFKPGKWMIQYNNLNLKTPVP KPGKWMIQYNNLNLKTPVPSDIDISRSCKP K W M L K T 0 0 3 0 0 1 0 0 0 1 2 1 1 0 0 0 0 1 1 0 0 0 11 0 1435.7282 P11586 P11586 303 313 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 2.8075E-12 126.28 By MS/MS By MS/MS 2 0 2 1 1 8015800 0 2846700 5169100 15449 528 16199 67591;67592 56988;56989 56988 1 0 1281900 1168100 WMVAGLGNPGLPGTR AMSRCVLEPRPPGKRWMVAGLGNPGLPGTR WMVAGLGNPGLPGTRHSVGMAVLGQLARRL R W M T R H 1 1 1 0 0 0 0 4 0 0 2 0 1 0 2 0 1 1 0 1 0 0 15 0 1524.7871 Q86Y79 Q86Y79 31 45 PTRH1 Probable peptidyl-tRNA hydrolase yes yes 2 0.00097316 73.435 By MS/MS 7 0 1 1 0 0 0 0 15450 1561 16200 67593 56990 56990 1 0 0 0 WNFTTPR KEQRMKDEKGLKVLKWNFTTPRDEYIEQLK EKGLKVLKWNFTTPRDEYIEQLKTQMSSCV K W N P R D 0 1 1 0 0 0 0 0 0 0 0 0 0 1 1 0 2 1 0 0 0 0 7 0 920.45045 Q14008 Q14008 1183 1189 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.03524 88.029 By MS/MS 1 0 1 1 25286000 0 0 25286000 15451 1279 16201 67594 56991 56991 1 0 0 5448300 WNLDELPK GKKFGNPGEKLVKKKWNLDELPKFEKNFYQ EKLVKKKWNLDELPKFEKNFYQEHPDLARR K W N P K F 0 0 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 1 0 0 0 0 8 0 1013.5182 P17844 P17844 46 53 DDX5 Probable ATP-dependent RNA helicase DDX5 yes yes 2 0.065189 69.198 By MS/MS 3 0 1 1 20528000 0 0 20528000 15452 588 16202 67595 56992 56992 1 0 0 3981400 WNLLQQQTTTTSSK KVQFLEQQNKVLETKWNLLQQQTTTTSSKN KWNLLQQQTTTTSSKNLEPLFETYLSVLRK K W N S K N 0 0 1 0 0 3 0 0 0 0 2 1 0 0 0 2 4 1 0 0 0 0 14 0 1634.8264 CON__P19013;P19013 CON__P19013 243 256 KRT4 Keratin, type II cytoskeletal 4 yes no 2 1.9031E-11 179.94 By MS/MS 1 0 1 1 51446000 51446000 0 0 + 15453 61 16203 67596 56993 56993 1 51446000 0 0 WNTALIGLMTYFR LMASGSTTFTKIVNKWNTALIGLMTYFREA NKWNTALIGLMTYFREAVVNTQELLDLLVK K W N F R E 1 1 1 0 0 0 0 1 0 1 2 0 1 1 0 0 2 1 1 0 0 0 13 0 1584.8123 Q6P2Q9 Q6P2Q9 1263 1275 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 2.2051E-07 168.94 By MS/MS 1.5 0.5 1 1 2 4300200 0 0 4300200 15454 1490 16204 67597;67598 56994 56994 1 0 0 932050 WNVSRPSLLADSK MNSSCADILLFASYKWNVSRPSLLADSKDV YKWNVSRPSLLADSKDVMDSTTTQKYWIDI K W N S K D 1 1 1 1 0 0 0 0 0 0 2 1 0 0 1 3 0 1 0 1 0 0 13 1 1471.7783 Q6P2Q9 Q6P2Q9 1637 1649 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 0.0044687 108.24 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 32630000 0 8913400 23716000 15455 1490 16205 67599;67600;67601;67602 56995;56996;56997 56997 3 0 4356700 5142300 WPAAGFELPAFDPR NLGLPFATPEEFFLKWPAAGFELPAFDPRT KWPAAGFELPAFDPRTVSRSGPLCLPESRA K W P P R T 3 1 0 1 0 0 1 1 0 0 1 0 0 2 3 0 0 1 0 0 0 0 14 0 1572.7725 Q96T60 Q96T60 331 344 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase yes yes 2 0.00090688 110.86 By MS/MS 4 0 1 1 7334000 0 0 7334000 15456 1840 16206 67603 56998 56998 1 0 0 1197900 WPEVDDDSIEDLGEVKK QGDFTDDIIDVIQEKWPEVDDDSIEDLGEV EVDDDSIEDLGEVKK_______________ K W P K K - 0 0 0 4 0 0 3 1 0 1 1 2 0 0 1 1 0 1 0 2 0 0 17 1 1972.9266 O43583 O43583 182 198 DENR Density-regulated protein yes yes 3 0.001532 69.125 By MS/MS 6 0 1 1 9160200 0 0 9160200 15457 202 16207 67604 56999 56999 1 0 0 1370500 WPFWLSPR VERMIAILTENYGGKWPFWLSPRQVMVVPV TENYGGKWPFWLSPRQVMVVPVGPTCDEYA K W P P R Q 0 1 0 0 0 0 0 0 0 0 1 0 0 1 2 1 0 2 0 0 0 0 8 0 1087.5603 P26639;A2RTX5 P26639 612 619 TARS;TARSL2 Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic yes no 2 0.0026928 107.59 By matching By MS/MS 2.5 0.5 1 1 1 1 5811000 0 804430 5006600 15458 672 16208 67605;67606 57000 57000 1 0 362250 971040 WPTETDVSSAK ELPTEKEVALVKDVRWPTETDVSSAKNVVL KDVRWPTETDVSSAKNVVLPTETEVAPAKD R W P A K N 1 0 0 1 0 0 1 0 0 0 0 1 0 0 1 2 2 1 0 1 0 0 11 0 1219.5721 P27816 P27816 322 332 MAP4 Microtubule-associated protein 4 yes yes 2 0.060035 67.726 By MS/MS 2 0 1 1 0 0 0 0 15459 683 16209 67607 57001 57001 1 0 0 0 WPVAGQIR GTLQTRTQEGSLSARWPVAGQIRATQQQHD EGSLSARWPVAGQIRATQQQHDFTLTQTAD R W P I R A 1 1 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 1 0 1 0 0 8 0 925.51339 P78527 P78527 2629 2636 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.025152 80.294 By MS/MS 1 0 1 1 9714300 0 0 9714300 15460 1089 16210 67608 57002 57002 1 0 0 2093100 WQAVLAQTDVR EVERWRERVAQLLERWQAVLAQTDVRQREL LLERWQAVLAQTDVRQRELEQLGRQLRYYR R W Q V R Q 2 1 0 1 0 2 0 0 0 0 1 0 0 0 0 0 1 1 0 2 0 0 11 0 1285.6779 Q15149 Q15149 1325 1335 PLEC Plectin yes yes 2 2.1649E-26 196.79 By MS/MS By matching 1.5 0.5 1 1 1 1 10485000 0 9023100 1461700 15461 1348 16211 67609;67610 57003 57003 1 0 4410400 330320 WQDIQNDPR DYWLLAGIINHGYARWQDIQNDPRYAILNE NHGYARWQDIQNDPRYAILNEPFKGEMNRG R W Q P R Y 0 1 1 2 0 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 9 0 1170.5418 Q14839;Q8TDI0 Q14839 1749 1757 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 2 0.0083398 91.069 By MS/MS 1 0 1 1 9776800 0 9776800 0 15462 1321;1662 16212 67611 57004 57004 1 0 4778800 0 WQEEMELYR VKAKVQPYLDDFQKKWQEEMELYRQKVEPL DDFQKKWQEEMELYRQKVEPLRAELQEGAR K W Q Y R Q 0 1 0 0 0 1 3 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 9 0 1282.5652 P02647 P02647 132 140 APOA1 Apolipoprotein A-I;Proapolipoprotein A-I;Truncated apolipoprotein A-I yes yes 2 0.00066834 129.47 By MS/MS 5.33 2.62 1 1 1 3 34013000 34013000 0 0 15463 389 16213 67612;67613;67614 57005;57006 57005 2 21847000 0 0 WQFLTLR FITTDVNPYYDSFVRWQFLTLRERNKIKFG PYYDSFVRWQFLTLRERNKIKFGKRYTIYS R W Q L R E 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 1 1 0 0 0 0 7 0 962.53379 Q9P2J5 Q9P2J5 220 226 LARS Leucine--tRNA ligase, cytoplasmic yes yes 2 9.4173E-15 138.62 By MS/MS 2 0 1 1 0 0 0 0 15464 2124 16214 67615 57007 57007 1 0 0 0 WQHDLFDSGFGGGAGVETGGK NRPAPYSRPKQLPDKWQHDLFDSGFGGGAG DSGFGGGAGVETGGKLLVSNLDFGVSDADI K W Q G K L 1 0 0 2 0 1 1 7 1 0 1 1 0 2 0 1 1 1 0 1 0 0 21 0 2120.9552 Q86V81 Q86V81 87 107 ALYREF THO complex subunit 4 yes yes 2 6.8873E-141 272.24 By MS/MS 6.5 0.5 1 1 2 22747000 0 0 22747000 15465 1551 16215 67616;67617 57008 57008 1 0 0 3474100 WQIGEQEFEALMR SPGSPVGEGTGSPPKWQIGEQEFEALMRML PKWQIGEQEFEALMRMLDNLGYRTGYPYRY K W Q M R M 1 1 0 0 0 2 3 1 0 1 1 0 1 1 0 0 0 1 0 0 0 0 13 0 1635.7715 P35611 P35611 370 382 ADD1 Alpha-adducin yes yes 2 3.6273E-11 175.41 By MS/MS 2 0 1 1 4353700 0 0 4353700 15466 755 16216 67618 57009 57009 1 0 0 983860 WQLSVATEQPELEGPR ASVTEIQEKWHDSRRWQLSVATEQPELEGP QLSVATEQPELEGPREGYGGFRGQREGSRG R W Q P R E 1 1 0 0 0 2 3 1 0 0 2 0 0 0 2 1 1 1 0 1 0 0 16 0 1838.9163 Q9NR30 Q9NR30 703 718 DDX21 Nucleolar RNA helicase 2 yes yes 2 2.3441E-91 258.78 By MS/MS 2.5 0.5 1 1 2 13658000 0 13658000 0 15467 2038 16217 67619;67620 57010;57011 57010 2 0 6091700 0 WQMNPYDR KGKTTIKTGASVLNKWQMNPYDRGSAFAIG GASVLNKWQMNPYDRGSAFAIGSDGLCCQS K W Q D R G 0 1 1 1 0 1 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 8 0 1108.476 Q92499 Q92499 91 98 DDX1 ATP-dependent RNA helicase DDX1 yes yes 2 0.047152 73.665 By MS/MS 3 0 1 1 4525100 0 4525100 0 15468 1705 16218 67621 57012 57012 1 0 1929100 0 WQNNLLPSR VISPRFDVQLKDLEKWQNNLLPSRQFGFIV LKDLEKWQNNLLPSRQFGFIVLTTSAGIMD K W Q S R Q 0 1 2 0 0 1 0 0 0 0 2 0 0 0 1 1 0 1 0 0 0 0 9 0 1126.5883 P62244 P62244 89 97 RPS15A 40S ribosomal protein S15a yes yes 2 2.8788E-05 150.24 By MS/MS By MS/MS By MS/MS 8.29 0.7 1 3 3 3 2 2 254760000 16287000 99975000 138490000 15469 1009 16219 67622;67623;67624;67625;67626;67627;67628 57013;57014;57015;57016;57017;57018;57019;57020 57015 8 19538000 60034000 31889000 WQQGNVFSCSVMHEALHNHYTQK GSFFLYSKLTVDKSRWQQGNVFSCSVMHEA CSVMHEALHNHYTQKSLSLSPGK_______ R W Q Q K S 1 0 2 0 1 3 1 1 3 0 1 1 1 1 0 2 1 1 1 2 0 0 23 0 2800.2598 P0DOX5;P01857;P01859 P0DOX5 419 441 IGHG1;IGHG2 Ig gamma-1 chain C region;Ig gamma-2 chain C region no no 4;5 7.6451E-21 132.83 By MS/MS 9 0 2 2 29358000 29358000 0 0 15470 381;382 16220 67629;67630 57021;57022 57022 2 16479000 0 0 WQQHQGLLPPGMTIDLFR VPPSRLMALLGQALKWQQHQGLLPPGMTID HQGLLPPGMTIDLFRGKAAVKDVEEEKFPT K W Q F R G 0 1 0 1 0 3 0 2 1 1 3 0 1 1 2 0 1 1 0 0 0 0 18 0 2136.0939 Q2TAY7 Q2TAY7 171 188 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 2;3 2.4138E-12 170.79 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 21018000 0 11691000 9327200 15471 1407 16221 67631;67632;67633 57023;57024 57024 2 0 3605600 1523400 WQYLLMAAEPYETIAFK FMSAYEQRIEPPDRRWQYLLMAAEPYETIA YLLMAAEPYETIAFKVPSREIDKAEGKFWT R W Q F K V 3 0 0 0 0 1 2 0 0 1 2 1 1 1 1 0 1 1 2 0 0 0 17 0 2073.0281 Q15428 Q15428 166 182 SF3A2 Splicing factor 3A subunit 2 yes yes 2 5.0886E-05 102.62 By MS/MS 3.5 0.5 1 1 2 8317800 0 0 8317800 15472 1366 16222 67634;67635 57025 57025 1 0 0 1382200 WREEQMER SQVDRLQSEPESIRKWREEQMERLEALDAN EPESIRKWREEQMERLEALDANSRKQEAEW K W R E R L 0 2 0 0 0 1 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 8 1 1162.5189 P09496 P09496 113 120 CLTA Clathrin light chain A yes yes 2 0.0041266 128.57 By MS/MS 6 0 1 1 11376000 0 0 11376000 15473 486 16223 67636 57026 57026 1 0 0 1702000 WSEPNEEELIK FLEPEVLDPESVELKWSEPNEEELIKFMCG VELKWSEPNEEELIKFMCGEKQFSEERIRS K W S I K F 0 0 1 0 0 0 4 0 0 1 1 1 0 0 1 1 0 1 0 0 0 0 11 0 1372.6511 P39748 P39748 298 308 FEN1 Flap endonuclease 1 yes yes 2 0.062055 70.929 By MS/MS 4 0 1 1 7409500 0 0 7409500 15474 780 16224 67637 57027 57027 1 0 0 1210200 WSLLQQQK KVRFLEQQNKMLETKWSLLQQQKTARSNMD NKMLETKWSLLQQQKTARSNMDNMFESYIN K W S Q K T 0 0 0 0 0 3 0 0 0 0 2 1 0 0 0 1 0 1 0 0 0 0 8 0 1029.5607 CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552 CON__P05787 123 130 KRT8 Keratin, type II cytoskeletal 8 yes no 2 0.00027179 134.12 By MS/MS By MS/MS 4.56 1.5 1 1 3 1 2 1 6 3 1059700000 0 534550000 525110000 + 15475 49 16225 67638;67639;67640;67641;67642;67643;67644;67645;67646 57028;57029;57030;57031;57032;57033 57030 6 0 173920000 86030000 WSMPELAEVEENKK LIRKKVQEFEHVNGRWSMPELAEVEENKKM RWSMPELAEVEENKKMSQPGSPSPKTPTPS R W S K K M 1 0 1 0 0 0 4 0 0 0 1 2 1 0 1 1 0 1 0 1 0 0 14 1 1688.808 Q14839 Q14839 1516 1529 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 3 0.022051 53.403 By MS/MS 1.5 0.5 1 1 2 7135700 0 0 7135700 15476 1321 16226 67647;67648 57034 57034 1 0 0 1556800 WSPTHEQQLISGSLDNIVK SLSLTSHTGWVTSVKWSPTHEQQLISGSLD HEQQLISGSLDNIVKLWDTRSCKAPLYDLA K W S V K L 0 0 1 1 0 2 1 1 1 2 2 1 0 0 1 3 1 1 0 1 0 0 19 0 2151.096 Q9GZL7 Q9GZL7 350 368 WDR12 Ribosome biogenesis protein WDR12 yes yes 3 1.0271E-06 106.75 By MS/MS 5 0 1 1 22172000 0 22172000 0 15477 1949 16227 67649 57035 57035 1 0 5715200 0 WSQLLANSAAR QSKAIEARHASLMKRWSQLLANSAARKKKL LMKRWSQLLANSAARKKKLLEAQSHFRKVE R W S A R K 3 1 1 0 0 1 0 0 0 0 2 0 0 0 0 2 0 1 0 0 0 0 11 0 1215.636 Q13813 Q13813 2065 2075 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2 1.9796E-07 160.75 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 44116000 0 19763000 24352000 15478 1268 16228 67650;67651;67652 57036;57037 57036 2 0 9660000 5285000 WSTISENLFATTGYPGK QNKRPVHMDRACLFRWSTISENLFATTGYP TISENLFATTGYPGKMASQFQIHHLGHPQP R W S G K M 1 0 1 0 0 0 1 2 0 1 1 1 0 1 1 2 3 1 1 0 0 0 17 0 1870.9101 Q8NFH4 Q8NFH4 259 275 NUP37 Nucleoporin Nup37 yes yes 2 0.0055004 75.088 By MS/MS 6 0 1 1 6698300 0 0 6698300 15479 1642 16229 67653 57038 57038 1 0 0 1002100 WTELGALDILQMLGR VIIKGTQVYSPEKGRWTELGALDILQMLGR WTELGALDILQMLGRAGRPQYDTKGEGILI R W T G R A 1 1 0 1 0 1 1 2 0 1 4 0 1 0 0 0 1 1 0 0 0 0 15 0 1714.9076 O75643 O75643 841 855 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.5711E-89 254.53 By MS/MS 1.5 0.5 2 2 4 25050000 0 0 25050000 15480 277 16230 67654;67655;67656;67657 57039;57040;57041 57039 3 0 0 5425200 WTGMIIGPPR VSWGLEDDEDMTLTRWTGMIIGPPRTNYEN MTLTRWTGMIIGPPRTNYENRIYSLKVECG R W T P R T 0 1 0 0 0 0 0 2 0 2 0 0 1 0 2 0 1 1 0 0 0 0 10 0 1126.5957 Q15819;Q13404 Q15819 46 55 UBE2V2;UBE2V1 Ubiquitin-conjugating enzyme E2 variant 2;Ubiquitin-conjugating enzyme E2 variant 1 yes no 2 0.01955 83.265 By MS/MS 8 0 1 1 1927500 0 1927500 0 15481 1242 16231 67658 57042 57042 1 0 876950 0 WTIASLIPR ATSTTANMTVSPEGRWTIASLIPRHFQAGM VSPEGRWTIASLIPRHFQAGMQAYIDIKNC R W T P R H 1 1 0 0 0 0 0 0 0 2 1 0 0 0 1 1 1 1 0 0 0 0 9 0 1055.6128 CON__Q28107 CON__Q28107 306 314 yes yes 2 0.042528 73.665 By MS/MS 3 0 1 1 609030 0 0 609030 + 15482 77 16232 67659 57043 57043 1 0 0 118120 WTLLQEQGTK KVRFLEQQNKVLDTKWTLLQEQGTKTVRQN VLDTKWTLLQEQGTKTVRQNLEPLFEQYIN K W T T K T 0 0 0 0 0 2 1 1 0 0 2 1 0 0 0 0 2 1 0 0 0 0 10 0 1202.6295 P02538;CON__P02538;CON__P04259;CON__P13647;P13647;CON__P48668;P48668 CON__P48668 195 204 KRT6A;KRT5;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C no no 2 5.885E-50 226.04 By MS/MS By MS/MS By MS/MS 5.08 2.77 3 3 2 3 3 3 3 1 2 2 10 6 9 1926000000 1367200000 88771000 469990000 + 15483 68;37;47;58 16233 67660;67661;67662;67663;67664;67665;67666;67667;67668;67669;67670;67671;67672;67673;67674;67675;67676;67677;67678;67679;67680;67681;67682;67683;67684 57044;57045;57046;57047;57048;57049;57050;57051;57052;57053;57054;57055;57056;57057;57058;57059;57060;57061;57062;57063;57064;57065;57066;57067;57068 57054 25 1333300000 36283000 137580000 WTTLNSLQLHGLQLR SGDGTMRKNIDVWKKWTTLNSLQLHGLQLR WTTLNSLQLHGLQLRIATRGAEQLAEGGRM K W T L R I 0 1 1 0 0 2 0 1 1 0 5 0 0 0 0 1 2 1 0 0 0 0 15 0 1778.9792 Q08J23 Q08J23 287 301 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase yes yes 3 0.038048 43.548 By MS/MS 2.5 0.5 1 1 2 8638100 0 8638100 0 15484 1187 16234 67685;67686 57069 57069 1 0 3843900 0 WVAVLSQDYPTLAFHASLTNPFGK VLNKCDLVPTWATKRWVAVLSQDYPTLAFH PTLAFHASLTNPFGKGAFIQLLRQFGKLHT R W V G K G 3 0 1 1 0 1 0 1 1 0 3 1 0 2 2 2 2 1 1 2 0 0 24 0 2661.3591 Q13823 Q13823 268 291 GNL2 Nucleolar GTP-binding protein 2 yes yes 3 2.6509E-15 111.66 By MS/MS 2 0 1 1 2552600 0 0 2552600 15485 1269 16235 67687 57070 57070 1 0 0 576830 WVEISNEVR KVAFKDFSGDMCKLKWVEISNEVRKFRTLT DMCKLKWVEISNEVRKFRTLTELILDAQEH K W V V R K 0 1 1 0 0 0 2 0 0 1 0 0 0 0 0 1 0 1 0 2 0 0 9 0 1130.572 P17480 P17480 72 80 UBTF Nucleolar transcription factor 1 yes yes 2 1.6165E-07 160.75 By MS/MS By MS/MS 2 0 2 1 1 51320000 0 8200200 43119000 15486 584 16236 67688;67689 57071;57072 57072 2 0 3692700 9744100 WVGDLPNGR AASTTARKDIPVLPKWVGDLPNGRVCP___ IPVLPKWVGDLPNGRVCP____________ K W V G R V 0 1 1 1 0 0 0 2 0 0 1 0 0 0 1 0 0 1 0 1 0 0 9 0 1012.509 Q96DR8 Q96DR8 79 87 MUCL1 Mucin-like protein 1 yes yes 2 0.0023442 104.37 By MS/MS 3 1.41 1 1 1 1 1 5 152920000 152920000 0 0 15487 1768 16237 67690;67691;67692;67693;67694 57073;57074 57073 2 149480000 0 0 WVGGPEIELIAIATGGR EANHLLLQNNLPAVRWVGGPEIELIAIATG GGPEIELIAIATGGRIVPRFSELTAEKLGF R W V G R I 2 1 0 0 0 0 2 4 0 3 1 0 0 0 1 0 1 1 0 1 0 0 17 0 1737.9414 P48643 P48643 324 340 CCT5 T-complex protein 1 subunit epsilon yes yes 2 2.2438E-05 108.3 By MS/MS 4 0.816 1 1 1 3 5690200 0 0 5690200 15488 845 16238 67695;67696;67697 57075 57075 1 0 0 934420 WVHAEMVNK SATMLNASSSKEHVKWVHAEMVNKNSELKL SKEHVKWVHAEMVNKNSELKLIYVTPEKIA K W V N K N 1 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 2 0 0 9 0 1112.5437 P46063 P46063 172 180 RECQL ATP-dependent DNA helicase Q1 yes yes 2 0.014818 85.642 By MS/MS 3 0 1 1 7979500 0 0 7979500 15489 823 16239 67698 57076 57076 1 0 0 1547600 WVMWFGDGK SWWMTGRSRAAEGTRWVMWFGDGKFSVVCV AAEGTRWVMWFGDGKFSVVCVEKLMPLSSF R W V G K F 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 0 0 2 0 1 0 0 9 0 1124.5113 Q9Y6K1 Q9Y6K1 327 335 DNMT3A DNA (cytosine-5)-methyltransferase 3A yes yes 2 0.056614 69.598 By MS/MS 2 0 1 1 2023600 0 0 2023600 15490 2313 16240 67699 57077 57077 1 0 0 457290 WVPLQIDMKPEVPR DCQRGGQKKKGNKHKWVPLQIDMKPEVPRE KWVPLQIDMKPEVPREKLASRPTRPPEPRH K W V P R E 0 1 0 1 0 1 1 0 0 1 1 1 1 0 3 0 0 1 0 2 0 0 14 1 1706.9178 Q6PKG0 Q6PKG0 252 265 LARP1 La-related protein 1 yes yes 3 0.0017059 84.859 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 17758000 0 11460000 6297700 15491 1497 16241 67700;67701;67702 57078;57079 57079 2 0 5264900 1423200 WVTTASLLDYDTVAGADK NENQLIIFADDTYPRWVTTASLLDYDTVAG TASLLDYDTVAGADKFGNICVVRLPPNTND R W V D K F 3 0 0 3 0 0 0 1 0 0 2 1 0 0 0 1 3 1 1 2 0 0 18 0 1924.9418 Q15393 Q15393 1032 1049 SF3B3 Splicing factor 3B subunit 3 yes yes 2 1.5071E-08 137.68 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 20200000 0 3801100 16399000 15492 1361 16242 67703;67704;67705;67706 57080;57081;57082 57081 3 0 1737500 3637800 WWEEERYPEGIK NKKKKPKKEEEQKWKWWEEERYPEGIKWKF KWKWWEEERYPEGIKWKFLEHKGPVFAPPY K W W I K W 0 1 0 0 0 0 4 1 0 1 0 1 0 0 1 0 0 2 1 0 0 0 12 1 1620.7573 P11387 P11387 205 216 TOP1 DNA topoisomerase 1 yes yes 2;3 7.4327E-88 249.83 By MS/MS 2 0.816 2 2 2 6 134050000 0 0 134050000 15493 523 16243 67707;67708;67709;67710;67711;67712 57083;57084;57085 57084 3 0 0 29630000 WYQMGAYQPFFR VGGFFKNPEPELLVRWYQMGAYQPFFRAHA LVRWYQMGAYQPFFRAHAHLDTGRREPWLL R W Y F R A 1 1 0 0 0 2 0 1 0 0 0 0 1 2 1 0 0 1 2 0 0 0 12 0 1592.7235 Q14697 Q14697 663 674 GANAB Neutral alpha-glucosidase AB yes yes 2 6.4463E-08 166.17 By MS/MS By MS/MS 2 0 2 1 1 10692000 0 4577800 6114700 15494 1317 16244 67713;67714 57086;57087 57086 2 0 2061500 1381800 WYVDGVEVHNAK VVVDVSHEDPEVQFKWYVDGVEVHNAKTKP QFKWYVDGVEVHNAKTKPREEQYNSTFRVV K W Y A K T 1 0 1 1 0 0 1 1 1 0 0 1 0 0 0 0 0 1 1 3 0 0 12 0 1415.6834 P01860 P01860 207 218 IGHG3 Ig gamma-3 chain C region yes yes 2;3 0.00491 98.048 By MS/MS 9.33 0.471 2 1 3 24521000 24521000 0 0 15495 383 16245 67715;67716;67717 57088;57089 57088 2 15189000 0 0 YAAPEQNNDPQQSK SAPFFIPTIPGLVPRYAAPEQNNDPQQSKV RYAAPEQNNDPQQSKVVNLGVLAQKSDFCL R Y A S K V 2 0 2 1 0 3 1 0 0 0 0 1 0 0 2 1 0 0 1 0 0 0 14 0 1588.7118 Q8NI36 Q8NI36 801 814 WDR36 WD repeat-containing protein 36 yes yes 2 0.00083119 77.744 By MS/MS 2 0 1 1 0 0 0 0 15496 1648 16246 67718 57090 57090 1 0 0 0 YAAQLPALFR ATMELAVAVLRDLLRYAAQLPALFRDISMN RDLLRYAAQLPALFRDISMNHLPGLLTSLL R Y A F R D 3 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 1 0 0 0 10 0 1148.6342 Q8IZL8 Q8IZL8 161 170 PELP1 Proline-, glutamic acid- and leucine-rich protein 1 yes yes 2 6.3196E-14 143.11 By MS/MS By MS/MS 2 0 2 1 1 15780000 0 5181000 10599000 15497 1596 16247 67719;67720 57091;57092 57092 0 0 2333100 2395200 YAASSYLSLTPEQWK AGVETTTPSKQSNNKYAASSYLSLTPEQWK YAASSYLSLTPEQWKSHKSYSCQVTHEGST K Y A W K S 2 0 0 0 0 1 1 0 0 0 2 1 0 0 1 3 1 1 2 0 0 0 15 0 1742.8516 P0DOY3;P0DOY2;P0CF74;P0DOX8;P0CG04;A0M8Q6;B9A064 P0DOY3 66 80 IGLC6;IGLC1;IGLC7;IGLL5 Ig lambda-6 chain C region;Ig lambda-1 chain C regions;Ig lambda-7 chain C region;Immunoglobulin lambda-like polypeptide 5 yes no 2 7.4444E-173 300.89 By MS/MS 5.71 3.01 1 1 1 1 1 1 1 7 96749000 96749000 0 0 15498 498 16248 67721;67722;67723;67724;67725;67726;67727 57093;57094;57095;57096;57097;57098 57094 6 83054000 0 0 YAATSQVLLPSK ISSTRGFPSVLRGGKYAATSQVLLPSKDVM GGKYAATSQVLLPSKDVMQGTDEHVVCKVQ K Y A S K D 2 0 0 0 0 1 0 0 0 0 2 1 0 0 1 2 1 0 1 1 0 0 12 0 1276.7027 P01871;P0DOX6 P01871 65 76 IGHM Ig mu chain C region yes no 2 6.1607E-05 143.89 By MS/MS 9.5 0.5 1 1 2 11679000 11679000 0 0 15499 385 16249 67728;67729 57099;57100 57099 2 11871000 0 0 YADFAPSLLQVWK DVNCAVHLCSLFHQRYADFAPSLLQVWKKH QRYADFAPSLLQVWKKHFEARKEEKTPNIT R Y A W K K 2 0 0 1 0 1 0 0 0 0 2 1 0 1 1 1 0 1 1 1 0 0 13 0 1536.7977 Q9HAU5 Q9HAU5 233 245 UPF2 Regulator of nonsense transcripts 2 yes yes 2 0.038994 72.2 By MS/MS 2 0 1 1 2523300 0 2523300 0 15500 2003 16250 67730 57101 57101 1 0 1136300 0 YADLLLEK DVQRQQEREKELQHRYADLLLEKETLKSKF EKELQHRYADLLLEKETLKSKF________ R Y A E K E 1 0 0 1 0 0 1 0 0 0 3 1 0 0 0 0 0 0 1 0 0 0 8 0 963.5277 Q99459 Q99459 788 795 CDC5L Cell division cycle 5-like protein yes yes 2 0.03878 75.738 By MS/MS 2 0 1 1 7950200 0 7950200 0 15501 1843 16251 67731 57102 57102 1 0 3580100 0 YADQEVPR HYTPATDGPYTVAVKYADQEVPRSPFKIKV PYTVAVKYADQEVPRSPFKIKVLPAHDASK K Y A P R S 1 1 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 8 0 976.46141 Q14315 Q14315 1519 1526 FLNC Filamin-C yes yes 2 8.0495E-05 148.33 By MS/MS 1 0 1 1 3978200 0 3978200 0 15502 1298 16252 67732 57103 57103 1 0 1944500 0 YAFGQETNVPLNNFSADQVTR LIRECSDVQPKLWARYAFGQETNVPLNNFS TNVPLNNFSADQVTRALENVLSGKA_____ R Y A T R A 2 1 3 1 0 2 1 1 0 0 1 0 0 2 1 1 2 0 1 2 0 0 21 0 2370.124 O43678 O43678 69 89 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 yes yes 3 0.0048239 48.053 By MS/MS 10 0 1 1 988780 0 988780 0 15503 208 16253 67733 57104 57104 1 0 5002400 0 YAFSGVAFTGAK IKEKLSQGVTLVVDRYAFSGVAFTGAKENF VDRYAFSGVAFTGAKENFSLDWCKQPDVGL R Y A A K E 3 0 0 0 0 0 0 2 0 0 0 1 0 2 0 1 1 0 1 1 0 0 12 0 1217.6081 P23919 P23919 98 109 DTYMK Thymidylate kinase yes yes 2 0.007079 91.658 By MS/MS 7 0 1 1 0 0 0 0 15504 647 16254 67734 57105 57105 1 0 0 0 YAHVVLR KIAFAITAIKGVGRRYAHVVLRKADIDLTK AIKGVGRRYAHVVLRKADIDLTKRAGELTE R Y A L R K 1 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 2 0 0 7 0 856.49192 P62269 P62269 40 46 RPS18 40S ribosomal protein S18 yes yes 2 0.0159 109.88 By MS/MS 8.5 1.12 1 1 1 1 4 21244000 0 21244000 0 15505 1014 16255 67735;67736;67737;67738 57106;57107 57107 2 0 18335000 0 YAHWVVSQPPDTYLKPLMTELLK KKALVRSITCWTLSRYAHWVVSQPPDTYLK PPDTYLKPLMTELLKRILDSNKRVQEAACS R Y A L K R 1 0 0 1 0 1 1 0 1 0 4 2 1 0 3 1 2 1 2 2 0 0 23 1 2728.4298 Q92973 Q92973 473 495 TNPO1 Transportin-1 yes yes 4 0.012667 35.973 By MS/MS 3 0 1 1 4847800 0 0 4847800 15506 1734 16256 67739 57108 57108 1 0 0 940250 YAICSALAASALPALVMSK TWRRWHRRVNTTQKRYAICSALAASALPAL SALAASALPALVMSKGHRIEEVPELPLVVE R Y A S K G 6 0 0 0 1 0 0 0 0 1 3 1 1 0 1 3 0 0 1 1 0 0 19 0 1936.0162 P36578 P36578 122 140 RPL4 60S ribosomal protein L4 yes yes 2;3 1.3074E-08 115.78 By MS/MS By MS/MS 4.29 1.28 1 1 1 3 1 1 6 58209000 0 9776200 48432000 15507 762 16257 67740;67741;67742;67743;67744;67745;67746 57109;57110;57111;57112 57109 4 0 2520000 7582100 YAIHCIHAIFSSK VLHHKSKKGPPRQAKYAIHCIHAIFSSKET AKYAIHCIHAIFSSKETQFAQIFEPLHKSL K Y A S K E 2 0 0 0 1 0 0 0 2 3 0 1 0 1 0 2 0 0 1 0 0 0 13 0 1545.7762 Q9NTI5 Q9NTI5 728 740 PDS5B Sister chromatid cohesion protein PDS5 homolog B yes yes 2;3 0.0042468 102.52 By MS/MS 1.5 0.5 2 2 4 30731000 0 0 30731000 15508 2053 16258 67747;67748;67749;67750 57113;57114 57113 2 0 0 6714500 YAILNEPFK NHGYARWQDIQNDPRYAILNEPFKGEMNRG IQNDPRYAILNEPFKGEMNRGNFLEIKNKF R Y A F K G 1 0 1 0 0 0 1 0 0 1 1 1 0 1 1 0 0 0 1 0 0 0 9 0 1093.5808 Q14839 Q14839 1758 1766 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 0.00098008 110.12 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 28662000 0 6769700 21892000 15509 1321 16259 67751;67752;67753;67754 57115;57116 57116 2 0 3308900 4663800 YAILNEPFKGEMNR NHGYARWQDIQNDPRYAILNEPFKGEMNRG RYAILNEPFKGEMNRGNFLEIKNKFLARRF R Y A N R G 1 1 2 0 0 0 2 1 0 1 1 1 1 1 1 0 0 0 1 0 0 0 14 1 1680.8294 Q14839 Q14839 1758 1771 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2;3 3.5164E-16 186.87 By MS/MS By MS/MS 1 0 2 1 1 27071000 0 12216000 14855000 15510 1321 16260 67755;67756 57117;57118 57118 2 0 5971100 3200600 YALQMEQLNGILLHLESELAQTR LKASLENSLREVEARYALQMEQLNGILLHL NGILLHLESELAQTRAEGQRQAQEYEALLN R Y A T R A 2 1 1 0 0 3 3 1 1 1 6 0 1 0 0 1 1 0 1 0 0 0 23 0 2669.3847 P05783 P05783 331 353 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 6.2379E-16 120.75 By MS/MS 3.83 1.07 1 1 2 2 6 82159000 0 0 82159000 15511 436 16261;16262 67757;67758;67759;67760;67761;67762 57119;57120;57121 57120 159 3 0 0 13290000 YALTGDEVK RECLPLIIFLRNRLKYALTGDEVKKICMQR LRNRLKYALTGDEVKKICMQRFIKIDGKVR K Y A V K K 1 0 0 1 0 0 1 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 0 994.49713 P62701;Q8TD47;P22090 P62701 54 62 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.026205 78.377 By MS/MS By matching 5.67 0.471 1 2 2 1 243660000 0 33622000 210040000 15512 1029 16263 67763;67764;67765 57122 57122 1 0 11450000 31424000 YALTGDEVKK RECLPLIIFLRNRLKYALTGDEVKKICMQR RNRLKYALTGDEVKKICMQRFIKIDGKVRT K Y A K K I 1 0 0 1 0 0 1 1 0 0 1 2 0 0 0 0 1 0 1 1 0 0 10 1 1122.5921 P62701;Q8TD47;P22090 P62701 54 63 RPS4X;RPS4Y2;RPS4Y1 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1 yes no 2 0.0064727 101.25 By matching By MS/MS 6.67 0.471 1 2 2 1 44749000 0 22093000 22656000 15513 1029 16264 67766;67767;67768 57123 57123 1 0 8252200 4020100 YALYDASFETK PFKHFVGMLPEKDCRYALYDASFETKESRK KDCRYALYDASFETKESRKEELMFFLWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 1 0 1 1 0 2 0 0 0 11 0 1306.6081 P60981 P60981 82 92 DSTN Destrin yes yes 2 0.0064901 98.055 By MS/MS 9 0.816 1 1 1 3 14536000 0 0 14536000 15514 972 16265 67769;67770;67771 57124 57124 1 0 0 7076500 YALYDATYETK PYATFVKMLPDKDCRYALYDATYETKESKK KDCRYALYDATYETKESKKEDLVFIFWAPE R Y A T K E 2 0 0 1 0 0 1 0 0 0 1 1 0 0 0 0 2 0 3 0 0 0 11 0 1336.6187 P23528;Q9Y281 P23528 82 92 CFL1;CFL2 Cofilin-1;Cofilin-2 no no 2 2.0823E-07 160.59 By MS/MS By MS/MS By MS/MS 8.33 1.15 3 2 2 2 2 3 4 484700000 7894000 71322000 405480000 15515 645;2237 16266 67772;67773;67774;67775;67776;67777;67778;67779;67780 57125;57126;57127;57128;57129;57130;57131 57129 7 10362000 101210000 162380000 YANMWLEYYNLER ARELWDSIMTRGNAKYANMWLEYYNLERAH AKYANMWLEYYNLERAHGDTQHCRKALHRA K Y A E R A 1 1 2 0 0 0 2 0 0 0 2 0 1 0 0 0 0 1 3 0 0 0 13 0 1763.7977 Q15020 Q15020 507 519 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 2 0.03047 74.944 By MS/MS 2 0 1 1 2903400 0 0 2903400 15516 1331 16267 67781 57132 57132 1 0 0 656110 YANNSNYKNDVMIR HEFLEFEFRPDGKLRYANNSNYKNDVMIRK RYANNSNYKNDVMIRKEAYVHKSVMEELKR R Y A I R K 1 1 4 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 2 1 0 0 14 1 1700.7941 P61326;Q96A72 Q96A72 36 49 MAGOH;MAGOHB Protein mago nashi homolog;Protein mago nashi homolog 2 no no 3 8.6539E-05 130.1 By MS/MS By MS/MS 8 0 2 1 1 18916000 0 13972000 4944000 15517 992;1748 16268 67782;67783 57133;57134 57133 2 0 6356700 757960 YAPSEAGLHEMDIR QPTITDNKDGTVTVRYAPSEAGLHEMDIRY RYAPSEAGLHEMDIRYDNMHIPGSPLQFYV R Y A I R Y 2 1 0 1 0 0 2 1 1 1 1 0 1 0 1 1 0 0 1 0 0 0 14 0 1587.7351 P21333 P21333 1832 1845 FLNA Filamin-A yes yes 2;3 0.00031347 149.49 By matching By MS/MS By MS/MS 1.33 0.471 4 2 1 2 3 47678000 941860 16624000 30112000 15518 623 16269 67784;67785;67786;67787;67788;67789 57135;57136;57137 57137 3 941860 8125700 6573700 YAPSGFYIASGDVSGK ADIYTEHAHQVVVAKYAPSGFYIASGDVSG APSGFYIASGDVSGKLRIWDTTQKEHLLKY K Y A G K L 2 0 0 1 0 0 0 3 0 1 0 1 0 1 1 3 0 0 2 1 0 0 16 0 1617.7675 O75083 O75083 66 81 WDR1 WD repeat-containing protein 1 yes yes 2 0.0020773 89.629 By MS/MS 4 0 1 1 14015000 0 14015000 0 15519 241 16270 67790 57138 57138 1 0 4650900 0 YAPSYYHVMPK EIQESRKKRGCSSSKYAPSYYHVMPKQNST SSSKYAPSYYHVMPKQNSTLVGDKRSDPEQ K Y A P K Q 1 0 0 0 0 0 0 0 1 0 0 1 1 0 2 1 0 0 3 1 0 0 11 0 1354.638 Q6PL18 Q6PL18 1118 1128 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 3 0.044938 48.998 By matching By MS/MS 1.33 0.471 2 1 1 2 28977000 0 1739600 27238000 15520 1498 16271 67791;67792;67793 57139;57140 57139 2 0 850290 5979300 YAPTEAQLNAVDALIDSMSLAK DLRQYMFSSLKNSKKYAPTEAQLNAVDALI LNAVDALIDSMSLAKKDEKTDTLEDLFPTT K Y A A K K 5 0 1 2 0 1 1 0 0 1 3 1 1 0 1 2 1 0 1 1 0 0 22 0 2320.1621 P13010 P13010 444 465 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2;3 1.9842E-28 179.94 By MS/MS By MS/MS 2.45 0.988 2 4 3 2 3 8 109270000 0 2364000 106910000 15521 542 16272 67794;67795;67796;67797;67798;67799;67800;67801;67802;67803;67804 57141;57142;57143;57144;57145;57146;57147;57148 57147 8 0 1052000 21094000 YAQAGFEGFK FGSEEQLLPVEKLPKYAQAGFEGFKTLNRI EKLPKYAQAGFEGFKTLNRIQSKLYRAALE K Y A F K T 2 0 0 0 0 1 1 2 0 0 0 1 0 2 0 0 0 0 1 0 0 0 10 0 1116.524 O75643 O75643 470 479 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.00049145 135.79 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 134260000 3830200 45090000 85343000 15522 277 16273 67805;67806;67807;67808 57149;57150 57150 2 3830200 22039000 18443000 YAQDEHLITFFVPVFEPLPPQYFIR SEVILHHEYFLLKAKYAQDEHLITFFVPVF FVPVFEPLPPQYFIRVVSDRWLSCETQLPV K Y A I R V 1 1 0 1 0 2 2 0 1 2 2 0 0 4 4 0 1 0 2 2 0 0 25 0 3065.5691 O75643 O75643 1245 1269 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 1.132E-19 111.53 By MS/MS 1.5 0.5 1 1 2 9992200 0 0 9992200 15523 277 16274 67809;67810 57151 57151 1 0 0 2210900 YASGSSASLGGPESAVA TFSSSSYSSSGYGRRYASGSSASLGGPESA SGSSASLGGPESAVA_______________ R Y A V A - 4 0 0 0 0 0 1 3 0 0 1 0 0 0 1 5 0 0 1 1 0 0 17 0 1509.6947 Q15149 Q15149 4668 4684 PLEC Plectin yes yes 2 0.0015442 89.827 By MS/MS 1 0 1 1 5510300 0 5510300 0 15524 1348 16275 67811 57152 57152 1 0 2693300 0 YASSANLHLPK DKLNNELLAKFLEKKYASSANLHLPKLSIS LEKKYASSANLHLPKLSISETYDLKSVLGD K Y A P K L 2 0 1 0 0 0 0 0 1 0 2 1 0 0 1 2 0 0 1 0 0 0 11 0 1199.6299 CON__P34955 CON__P34955 302 312 yes yes 2;3 0.00020265 136.99 By MS/MS By MS/MS By matching 5.75 2.75 1 1 2 3 2 2 2 1 2 9 3 4 212980000 147330000 24358000 41296000 + 15525 64 16276 67812;67813;67814;67815;67816;67817;67818;67819;67820;67821;67822;67823;67824;67825;67826;67827 57153;57154;57155;57156;57157 57153 5 135160000 41151000 9212500 YAVDDVPFSIPAASEIADLSNIINK ______________________________ PAASEIADLSNIINKLLKDKNEFHKHVEFD K Y A N K L 4 0 2 3 0 0 1 0 0 4 1 1 0 1 2 3 0 0 1 2 0 0 25 0 2661.3538 Q9GZL7 Q9GZL7 15 39 WDR12 Ribosome biogenesis protein WDR12 yes yes 3 9.2146E-06 72.532 By MS/MS 4 0 1 1 4506700 0 0 4506700 15526 1949 16277 67828 57158 57158 1 0 0 736090 YAVLYQPLFDK IEAKFYEEVHDLERKYAVLYQPLFDKRFEI LERKYAVLYQPLFDKRFEIINAIYEPTEEE K Y A D K R 1 0 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 1 0 0 11 0 1355.7125 P55209 P55209 106 116 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 2 0.0033947 105.4 By MS/MS 4 0 1 1 15626000 0 0 15626000 15527 940 16278 67829 57159 57159 1 0 0 2552200 YAVLYQPLFDKR IEAKFYEEVHDLERKYAVLYQPLFDKRFEI ERKYAVLYQPLFDKRFEIINAIYEPTEEEC K Y A K R F 1 1 0 1 0 1 0 0 0 0 2 1 0 1 1 0 0 0 2 1 0 0 12 1 1511.8136 P55209 P55209 106 117 NAP1L1 Nucleosome assembly protein 1-like 1 yes yes 2;3 2.5919E-05 152.97 By matching By MS/MS By MS/MS 5 1 4 3 2 1 1 2 7 77440000 1961400 9715500 65763000 15528 940 16279 67830;67831;67832;67833;67834;67835;67836;67837;67838;67839 57160;57161;57162;57163;57164;57165 57163 6 1530200 2748700 10067000 YAVPSAGLR NFVLKAIRPQIDLKRYAVPSAGLRLFALHA QIDLKRYAVPSAGLRLFALHASQFSTCLLD R Y A L R L 2 1 0 0 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 1 0 0 9 0 932.50797 P78527 P78527 265 273 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.0041756 98.523 By matching By MS/MS By matching 1.33 0.471 2 1 1 1 1 11104000 1978800 6673700 2451200 15529 1089 16280 67840;67841;67842 57166 57166 1 1978800 3262000 553920 YAWQGVALLPFVDER DFYPEDFAIDLNGKKYAWQGVALLPFVDER YAWQGVALLPFVDERRLRAALEEVYPDLTP K Y A E R R 2 1 0 1 0 1 1 1 0 0 2 0 0 1 1 0 0 1 1 2 0 0 15 0 1762.9043 Q9H0D6 Q9H0D6 642 656 XRN2 5-3 exoribonuclease 2 yes yes 2 2.4348E-17 187.58 By MS/MS 2 0 1 1 4560500 0 0 4560500 15530 1960 16281 67843 57167 57167 1 0 0 1030600 YAYYDTER PGRTMGVMFTPLTVKYAYYDTERIGVDLIM FTPLTVKYAYYDTERIGVDLIMKTCFSPNR K Y A E R I 1 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 8 0 1079.456 O00303 O00303 239 246 EIF3F Eukaryotic translation initiation factor 3 subunit F yes yes 2 0.026232 79.451 By MS/MS 5 0 1 1 4291500 0 0 4291500 15531 118 16282 67844 57168 57168 1 0 0 598590 YCGQLQMIQEQISNLEAQITDVR KKAALEKSLEDTKNRYCGQLQMIQEQISNL QEQISNLEAQITDVRQEIECQNQEYSLLLS R Y C V R Q 1 1 1 1 1 5 2 1 0 3 2 0 1 0 0 1 1 0 1 1 0 0 23 0 2736.3211 P35527;CON__P35527 P35527 405 427 KRT9 Keratin, type I cytoskeletal 9 yes no 3 3.2382E-29 176.67 By MS/MS 2 0.816 1 1 1 3 9540400 0 0 9540400 + 15532 750 16283 67845;67846;67847 57169 57169 1 0 0 2069200 YCVQLSQIQAQISALEEQLQQIR LKQSLEASLAETEGRYCVQLSQIQAQISAL QAQISALEEQLQQIRAETECQNTEYQQLLD R Y C I R A 2 1 0 0 1 7 2 0 0 3 3 0 0 0 0 2 0 0 1 1 0 0 23 0 2745.412 P13645;CON__P13645 P13645 400 422 KRT10 Keratin, type I cytoskeletal 10 yes no 2;3 7.434E-25 169.7 By MS/MS 2 0.632 1 3 1 5 44379000 0 0 44379000 + 15533 56 16284 67848;67849;67850;67851;67852 57170;57171;57172 57172 3 0 0 9779900 YCYLQNEVFGLFQK NQLKDMLANFRGSEKYCYLQNEVFGLFQKL KYCYLQNEVFGLFQKLENINGVTDGYLNSL K Y C Q K L 0 0 1 0 1 2 1 1 0 0 2 1 0 2 0 0 0 0 2 1 0 0 14 0 1807.8603 P15924 P15924 739 752 DSP Desmoplakin yes yes 2 0.0054458 87.789 By MS/MS 1 0 1 1 2943900 0 0 2943900 15534 572 16285 67853 57173 57173 1 0 0 634310 YDAFGEDSSSAMGVENR KISRMLAAKTVLAIRYDAFGEDSSSAMGVE AFGEDSSSAMGVENRAKLEARLRTLEDRGI R Y D N R A 2 1 1 2 0 0 2 2 0 0 0 0 1 1 0 3 0 0 1 1 0 0 17 0 1833.7476 Q9Y2X3 Q9Y2X3 372 388 NOP58 Nucleolar protein 58 yes yes 2;3 2.5009E-130 274.05 By MS/MS By MS/MS 3.33 1.15 1 1 2 4 1 1 8 111090000 5155300 0 105930000 15535 2254 16286;16287 67854;67855;67856;67857;67858;67859;67860;67861;67862 57174;57175;57176;57177;57178 57176 728 5 4022000 0 18138000 YDAFLASESLIK KLNKNKKLVKKLAKKYDAFLASESLIKQIP AKKYDAFLASESLIKQIPRILGPGLNKAGK K Y D I K Q 2 0 0 1 0 0 1 0 0 1 2 1 0 1 0 2 0 0 1 0 0 0 12 0 1355.6973 P62906 P62906 107 118 RPL10A 60S ribosomal protein L10a yes yes 2 0.00017587 133.81 By MS/MS By MS/MS 7 0.707 1 2 1 2 2 187330000 0 61407000 125930000 15536 1049 16288 67863;67864;67865;67866 57179;57180 57179 2 0 34846000 22232000 YDDMAAAMK SELVQKAKLAEQAERYDDMAAAMKAVTEQG AEQAERYDDMAAAMKAVTEQGHELSNEERN R Y D M K A 3 0 0 2 0 0 0 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 9 0 1014.4151 P31946;P61981 P31946 21 29 YWHAB;YWHAG 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed no no 2 0.016447 84.568 By matching By MS/MS 6.5 0.5 2 2 2 2 75263000 0 12758000 62506000 15537 724;1003 16289 67867;67868;67869;67870 57181;57182 57182 2 0 6589600 10450000 YDDYPENGVVQMNSR TSRPALEEDVIYHVKYDDYPENGVVQMNSR YDDYPENGVVQMNSRDVRARARTIIKWQDL K Y D S R D 0 1 2 2 0 1 1 1 0 0 0 0 1 0 1 1 0 0 2 2 0 0 15 0 1785.7628 Q96T88 Q96T88 188 202 UHRF1 E3 ubiquitin-protein ligase UHRF1 yes yes 2 0.00051562 142.08 By MS/MS 2 0 1 1 5141500 0 0 5141500 15538 1841 16290 67871 57183 57183 1 0 0 1161900 YDDYSSSR PPTRGPPPSYGGSSRYDDYSSSRDGYGGSR SYGGSSRYDDYSSSRDGYGGSRDSYSSSRS R Y D S R D 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 3 0 0 2 0 0 0 8 0 991.3883 P38159;Q96E39 P38159 310 317 RBMX;RBMXL1 RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1 no no 2 6.4946E-05 149.4 By MS/MS By MS/MS 4.67 1.49 1 1 2 2 2 1 6 3 23015000 0 21055000 1959900 15539 771;1772 16291 67872;67873;67874;67875;67876;67877;67878;67879;67880 57184;57185;57186 57185 3 0 6417900 291540 YDEELEGERPHSFR VDDLAQQKPRSILSKYDEELEGERPHSFRL KYDEELEGERPHSFRLEQGGTADGLREREL K Y D F R L 0 2 0 1 0 0 4 1 1 0 1 0 0 1 1 1 0 0 1 0 0 0 14 1 1762.7911 O43290 O43290 337 350 SART1 U4/U6.U5 tri-snRNP-associated protein 1 yes yes 3;4 2.8796E-05 154.07 By MS/MS 2 0.707 1 2 1 4 33579000 0 0 33579000 15540 193 16292 67881;67882;67883;67884 57187;57188 57187 2 0 0 7485400 YDEMVESMK EDLVYQAKLAEQAERYDEMVESMKKVAGMD AEQAERYDEMVESMKKVAGMDVELTVEERN R Y D M K K 0 0 0 1 0 0 2 0 0 0 0 1 2 0 0 1 0 0 1 1 0 0 9 0 1130.4624 P62258 P62258 20 28 YWHAE 14-3-3 protein epsilon yes yes 2 0.0017404 106.91 By MS/MS 6.5 0.5 1 1 2 33151000 0 0 33151000 15541 1011 16293 67885;67886 57189 57189 1 0 0 5078400 YDERPGPSPLPHR ADVNIRHSGRDDTSRYDERPGPSPLPHRDR SRYDERPGPSPLPHRDRDRDRERERRERSR R Y D H R D 0 2 0 1 0 0 1 1 1 0 1 0 0 0 4 1 0 0 1 0 0 0 13 1 1519.7532 P08621 P08621 219 231 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa yes yes 3 6.7602E-05 130.31 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 2 3 56752000 0 17944000 38808000 15542 474 16294 67887;67888;67889;67890;67891 57190;57191;57192 57190 3 0 5759300 6678300 YDGIILPGK HRISKEEAMRWFQQKYDGIILPGK______ RWFQQKYDGIILPGK_______________ K Y D G K - 0 0 0 1 0 0 0 2 0 2 1 1 0 0 1 0 0 0 1 0 0 0 9 0 974.54368 P62913 P62913 170 178 RPL11 60S ribosomal protein L11 yes yes 2 0.0010401 109.86 By matching By MS/MS By MS/MS 7 0 3 1 1 1 521750000 7356100 248800000 265590000 15543 1051 16295 67892;67893;67894 57193;57194 57193 2 15854000 142860000 47127000 YDLTVPFAR IYDLKDQGGELLSLRYDLTVPFARYLAMNK ELLSLRYDLTVPFARYLAMNKLTNIKRYHI R Y D A R Y 1 1 0 1 0 0 0 0 0 0 1 0 0 1 1 0 1 0 1 1 0 0 9 0 1080.5604 P12081;P49590 P12081 129 137 HARS;HARS2 Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial yes no 2 3.2175E-07 157.58 By MS/MS 4 0 1 1 13610000 0 13610000 0 15544 532 16296 67895 57195 57195 1 0 4516800 0 YDMSGAR ______________________________ PRSLEEEKYDMSGARLALILCVTKAREGSE K Y D A R L 1 1 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 7 0 798.33304 P31944 P31944 12 18 CASP14 Caspase-14;Caspase-14 subunit p17, mature form;Caspase-14 subunit p10, mature form;Caspase-14 subunit p20, intermediate form;Caspase-14 subunit p8, intermediate form yes yes 2 0.05484 81.381 By MS/MS 1.5 0.5 1 1 2 1408100 1408100 0 0 15545 723 16297 67896;67897 57196 57196 0 1490400 0 0 YDPPLEDGAMPSAR YNRDGDSYRSPWSNKYDPPLEDGAMPSARL KYDPPLEDGAMPSARLRKLEVEANNAFDQY K Y D A R L 2 1 0 2 0 0 1 1 0 0 1 0 1 0 3 1 0 0 1 0 0 0 14 0 1517.682 P47756 P47756 79 92 CAPZB F-actin-capping protein subunit beta yes yes 2 0.0061066 86.814 By MS/MS 6 0 1 1 3812200 0 0 3812200 15546 837 16298 67898 57197 57197 1 0 0 570340 YDPTIEDSYR SALTVQFVQGIFVEKYDPTIEDSYRKQVEV IFVEKYDPTIEDSYRKQVEVDAQQCMLEIL K Y D Y R K 0 1 0 2 0 0 1 0 0 1 0 0 0 0 1 1 1 0 2 0 0 0 10 0 1257.5513 P61224;P62834;A6NIZ1 P61224 32 41 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A;Ras-related protein Rap-1b-like protein yes no 2 0.0010717 110.41 By MS/MS 9.5 0.5 1 1 2 4823400 0 0 4823400 15547 986 16299 67899;67900 57198 57198 1 0 0 7202800 YDPTIEDSYRK SALTVQFVQGIFVEKYDPTIEDSYRKQVEV FVEKYDPTIEDSYRKQVEVDAQQCMLEILD K Y D R K Q 0 1 0 2 0 0 1 0 0 1 0 1 0 0 1 1 1 0 2 0 0 0 11 1 1385.6463 P61224;P62834 P61224 32 42 RAP1B;RAP1A Ras-related protein Rap-1b;Ras-related protein Rap-1A yes no 3 0.036025 52.391 By MS/MS 7 0 1 1 4869300 0 0 4869300 15548 986 16300 67901 57199 57199 1 0 0 864020 YDTALNLLK SDFCLKLEEGLVNNKYDTALNLLKESGPSG GLVNNKYDTALNLLKESGPSGIETELRSLS K Y D L K E 1 0 1 1 0 0 0 0 0 0 3 1 0 0 0 0 1 0 1 0 0 0 9 0 1049.5757 Q8NI36 Q8NI36 840 848 WDR36 WD repeat-containing protein 36 yes yes 2 0.0049743 97.093 By MS/MS By matching 3 0.816 1 1 1 2 1 4944500 0 4157000 787550 15549 1648 16301 67902;67903;67904 57200 57200 1 0 1848000 128630 YDTLAQMLTLGNIR IMYYAREPGKINHMRYDTLAQMLTLGNIRA RYDTLAQMLTLGNIRAGNKMIVMETCAGLV R Y D I R A 1 1 1 1 0 1 0 1 0 1 3 0 1 0 0 0 2 0 1 0 0 0 14 0 1607.8341 Q9UJA5 Q9UJA5 185 198 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 yes yes 2;3 0.001209 108.47 By MS/MS 4.67 0.471 1 2 3 61530000 0 61530000 0 15550 2168 16302 67905;67906;67907 57201;57202 57202 2 0 19587000 0 YDTVLDILR CNSMVLFDHVGCLKKYDTVLDILRDFFELR VGCLKKYDTVLDILRDFFELRLKYYGLRKE K Y D L R D 0 1 0 2 0 0 0 0 0 1 2 0 0 0 0 0 1 0 1 1 0 0 9 0 1106.5972 P11388 P11388 1012 1020 TOP2A DNA topoisomerase 2-alpha yes yes 2 2.6407E-11 170.66 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 35076000 0 3614700 31462000 15551 524 16303 67908;67909;67910;67911;67912 57203;57204;57205;57206 57205 4 0 1701200 6865300 YDVENCLANK YAVLPTGDVIGDSAKYDVENCLANKVDLSF GDSAKYDVENCLANKVDLSFSPSQSLPASH K Y D N K V 1 0 2 1 1 0 1 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 10 0 1224.5445 P01023 P01023 558 567 A2M Alpha-2-macroglobulin yes yes 2 0.04977 72.879 By MS/MS 9 0 1 1 3481500 3481500 0 0 15552 370 16304 67913 57207 57207 1 1954200 0 0 YDVYLINPQGK TRKLKQRKSGRSAGKYDVYLINPQGKAFRS SAGKYDVYLINPQGKAFRSKVELIAYFEKV K Y D G K A 0 0 1 1 0 1 0 1 0 1 1 1 0 0 1 0 0 0 2 1 0 0 11 0 1308.6714 P51608 P51608 120 130 MECP2 Methyl-CpG-binding protein 2 yes yes 2 0.022156 83.005 By MS/MS 3.5 0.5 1 1 2 14986000 0 0 14986000 15553 896 16305 67914;67915 57208 57208 1 0 0 2812100 YDWDLLAAR ITWNRKKLGEFFQTKYDWDLLAARSIWAFG EFFQTKYDWDLLAARSIWAFGPDATGPNIL K Y D A R S 2 1 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 9 0 1121.5506 Q15029 Q15029 722 730 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 8.5024E-18 184.89 By MS/MS By MS/MS 2.75 0.829 2 1 1 1 3 57312000 0 7004300 50308000 15554 1335 16306 67916;67917;67918;67919 57209;57210 57210 2 0 3154100 11042000 YEAAILEKQKLQEEAEIMER ELAAIQKELETLGAKYEAAILEKQKLQEEA LEKQKLQEEAEIMERRLIAADKLISGLGSE K Y E E R R 3 1 0 0 0 2 6 0 0 2 2 2 1 0 0 0 0 0 1 0 0 0 20 2 2420.2257 Q8IVF4 Q8IVF4 3296 3315 DNAH10 Dynein heavy chain 10, axonemal yes yes 5 0.062763 24.011 By MS/MS 2 0 1 1 2430300 0 0 2430300 15555 1570 16307 67920 57211 57211 0 0 0 549210 YEALKEPMVAR DAENIKKKQEALVARYEALKEPMVARKQKL LVARYEALKEPMVARKQKLADSLRLQQLFR R Y E A R K 2 1 0 0 0 0 2 0 0 0 1 1 1 0 1 0 0 0 1 1 0 0 11 1 1305.6751 Q13813 Q13813 766 776 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 2;3 0.0027905 97.565 By MS/MS 1 0 2 2 77372000 0 0 77372000 15556 1268 16308 67921;67922 57212;57213 57212 2 0 0 16671000 YEDAYQYQNIFGPLVK EKPGVDEEPQHVLLRYEDAYQYQNIFGPLV EDAYQYQNIFGPLVKLEADYDKKLKESQTQ R Y E V K L 1 0 1 1 0 2 1 1 0 1 1 1 0 1 1 0 0 0 3 1 0 0 16 0 1946.9414 Q92900 Q92900 296 311 UPF1 Regulator of nonsense transcripts 1 yes yes 2 4.1046E-05 118.4 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 14959000 0 5285400 9673400 15557 1729 16309 67923;67924;67925 57214;57215 57215 2 0 2380100 2118600 YEDEINK ELNNMQDLVEDYKKKYEDEINKRTAAENDF LVEDYKKKYEDEINKRTAAENDFVTLKKDV K Y E N K R 0 0 1 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 7 0 909.40798 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__H-INV:HIT000016045;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;Q01546;P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5;CON__Q7Z794;Q7Z794 CON__P35908 274 280 KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT76;KRT1;KRT2;KRT77 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 2 0.0011389 150.02 By MS/MS By MS/MS 5.77 2.86 1 1 2 1 1 1 1 2 2 1 11 2 133290000 126140000 0 7147900 + 15558 65;66;413;49;68;37;47;58;69;71;1135;54;95;86 16310 67926;67927;67928;67929;67930;67931;67932;67933;67934;67935;67936;67937;67938 57216;57217;57218;57219;57220;57221;57222;57223;57224;57225;57226;57227;57228;57229 57217 14 115500000 0 3240000 YEDEINKR ELNNMQDLVEDYKKKYEDEINKRTAAENDF VEDYKKKYEDEINKRTAAENDFVTLKKDVD K Y E K R T 0 1 1 1 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 8 1 1065.5091 P02538;CON__P02538;CON__Q8VED5;CON__P04259;CON__P05787;P05787;CON__H-INV:HIT000016045;CON__P12035;P12035;CON__P13647;P13647;CON__P48668;P48668;CON__P50446;CON__Q01546;Q01546;P04264;CON__P04264;CON__P35908;CON__P35908v2;P35908;CON__Q3TTY5;CON__Q7Z794;Q7Z794 CON__P35908 274 281 KRT6A;KRT8;KRT3;KRT5;KRT6C;KRT76;KRT1;KRT2;KRT77 Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 1;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b no no 2 6.4095E-20 190.88 By MS/MS By MS/MS By MS/MS 5.47 2.47 1 1 2 2 1 2 2 2 2 1 8 6 166100000 405080 20622000 145070000 + 15559 65;66;413;49;68;37;47;58;69;71;1135;54;95;86 16311 67939;67940;67941;67942;67943;67944;67945;67946;67947;67948;67949;67950;67951;67952;67953 57230;57231;57232;57233;57234;57235;57236;57237;57238;57239;57240;57241 57237 11 227370 7827700 27638000 YEDFSNLGTTHLLR SPVSRIGLFIKAGSRYEDFSNLGTTHLLRL RYEDFSNLGTTHLLRLTSSLTTKGASSFKI R Y E L R L 0 1 1 1 0 0 1 1 1 0 3 0 0 1 0 1 2 0 1 0 0 0 14 0 1664.8158 P22695 P22695 71 84 UQCRC2 Cytochrome b-c1 complex subunit 2, mitochondrial yes yes 3 0.0032415 75.589 By MS/MS By MS/MS 5 0 2 1 1 9554300 0 2681000 6873400 15560 635 16312 67954;67955 57242;57243 57243 2 0 691070 958710 YEDQELTGK RREKEMLERLEKQKRYEDQELTGKNLPAFR LEKQKRYEDQELTGKNLPAFRLVDTPEGLP R Y E G K N 0 0 0 1 0 1 2 1 0 0 1 1 0 0 0 0 1 0 1 0 0 0 9 0 1081.4928 Q9UIG0 Q9UIG0 580 588 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.0029715 101.72 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 7078100 0 3870500 3207500 15561 2164 16313 67956;67957 57244;57245 57244 2 0 1743000 691110 YEDYDYR RDSYYDRGYDRGYDRYEDYDYRYRRRSPSP GYDRGYDRYEDYDYRYRRRSPSPYYSRYRS R Y E Y R Y 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 7 0 1022.3981 Q13595 Q13595 249 255 TRA2A Transformer-2 protein homolog alpha yes yes 2 0.013287 114.72 By matching By MS/MS 6 0.707 1 2 1 1 3 42260000 0 1434200 40825000 15562 1260 16314 67958;67959;67960;67961 57246;57247 57247 2 0 496460 5947400 YEEEEEQSR DELEEEARKADRESRYEEEEEQSRSMSRKR ADRESRYEEEEEQSRSMSRKRKASVHSSGR R Y E S R S 0 1 0 0 0 1 5 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 9 0 1197.4786 Q9Y5B9 Q9Y5B9 1006 1014 SUPT16H FACT complex subunit SPT16 yes yes 2 0.0007631 112.84 By MS/MS 6.75 2.28 1 1 1 1 4 2051200 0 0 2051200 15563 2296 16315 67962;67963;67964;67965 57248;57249;57250 57249 3 0 0 377940 YEELQITAGR AQKSKAEAESLYQSKYEELQITAGRHGDSV LYQSKYEELQITAGRHGDSVRNSKIEISEL K Y E G R H 1 1 0 0 0 1 2 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1178.5932 P04264;CON__P04264 P04264 377 386 KRT1 Keratin, type II cytoskeletal 1 no no 2 4.6313E-50 226.46 By MS/MS By MS/MS By MS/MS 5.55 2.81 4 4 4 4 4 5 5 4 4 4 20 12 10 17670000000 13075000000 806080000 3789200000 + 15564 413 16316 67966;67967;67968;67969;67970;67971;67972;67973;67974;67975;67976;67977;67978;67979;67980;67981;67982;67983;67984;67985;67986;67987;67988;67989;67990;67991;67992;67993;67994;67995;67996;67997;67998;67999;68000;68001;68002;68003;68004;68005;68006;68007 57251;57252;57253;57254;57255;57256;57257;57258;57259;57260;57261;57262;57263;57264;57265;57266;57267;57268;57269;57270;57271;57272;57273;57274;57275;57276;57277;57278;57279;57280;57281;57282;57283;57284;57285;57286;57287;57288;57289;57290;57291;57292;57293;57294;57295;57296;57297;57298;57299;57300;57301;57302;57303;57304;57305;57306;57307;57308;57309;57310;57311;57312;57313;57314;57315;57316;57317;57318;57319;57320;57321;57322;57323;57324;57325 57257 75 12905000000 677480000 1486400000 YEELQQTAGR ANRSRTEAESWYQTKYEELQQTAGRHGDDL WYQTKYEELQQTAGRHGDDLRNTKHEISEM K Y E G R H 1 1 0 0 0 2 2 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1193.5677 CON__P13647;P13647 CON__P13647 365 374 KRT5 Keratin, type II cytoskeletal 5 no no 2 1.2609E-49 223.83 By MS/MS By MS/MS By MS/MS 4.9 2.76 3 2 3 2 2 2 3 1 2 1 8 4 9 1133300000 992520000 14794000 126030000 + 15565 58 16317 68008;68009;68010;68011;68012;68013;68014;68015;68016;68017;68018;68019;68020;68021;68022;68023;68024;68025;68026;68027;68028 57326;57327;57328;57329;57330;57331;57332;57333;57334;57335;57336;57337;57338;57339;57340;57341;57342;57343;57344;57345;57346 57342 21 968020000 7161000 60592000 YEELQSLAGK ANRSRAEAESMYQIKYEELQSLAGKHGDDL MYQIKYEELQSLAGKHGDDLRRTKTEISEM K Y E G K H 1 0 0 0 0 1 2 1 0 0 2 1 0 0 0 1 0 0 1 0 0 0 10 0 1136.5714 CON__P05787;P05787;CON__H-INV:HIT000292931 CON__P05787 286 295 KRT8 Keratin, type II cytoskeletal 8 yes no 2 7.2839E-11 167.33 By MS/MS By MS/MS By MS/MS 3.92 2.13 3 1 1 3 1 2 2 2 5 6 2030500000 47394000 677360000 1305800000 + 15566 49 16318 68029;68030;68031;68032;68033;68034;68035;68036;68037;68038;68039;68040;68041 57347;57348;57349;57350;57351;57352;57353;57354;57355;57356;57357;57358;57359 57349 13 37276000 218600000 224650000 YEELQVTAGR AQRSRAEAESWYQTKYEELQVTAGRHGDDL WYQTKYEELQVTAGRHGDDLRNTKQEIAEI K Y E G R H 1 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 10 0 1164.5775 P02538;CON__P02538;CON__P04259;CON__P48668;P48668;CON__P50446 CON__P48668 360 369 KRT6A;KRT6C Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6C no no 2 5.5479E-17 183.65 By MS/MS By MS/MS By MS/MS 5.53 2.79 1 2 2 2 2 1 2 2 1 2 10 1 6 567270000 485380000 9133100 72760000 + 15567 68;37;47;69 16319 68042;68043;68044;68045;68046;68047;68048;68049;68050;68051;68052;68053;68054;68055;68056;68057;68058 57360;57361;57362;57363;57364;57365;57366;57367;57368;57369;57370;57371;57372;57373;57374;57375;57376 57363 17 492290000 3030900 28900000 YEELQVTVGR AQRSKEEAEALYHSKYEELQVTVGRHGDSL LYHSKYEELQVTVGRHGDSLKEIKIEISEL K Y E G R H 0 1 0 0 0 1 2 1 0 0 1 0 0 0 0 0 1 0 1 2 0 0 10 0 1192.6088 CON__P35908;CON__P35908v2;P35908 CON__P35908 381 390 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 1.2609E-49 223.83 By MS/MS By MS/MS By MS/MS 5.74 3.06 4 3 2 2 3 3 3 3 4 4 12 9 10 5068200000 3536800000 139640000 1391800000 + 15568 65;66 16320 68059;68060;68061;68062;68063;68064;68065;68066;68067;68068;68069;68070;68071;68072;68073;68074;68075;68076;68077;68078;68079;68080;68081;68082;68083;68084;68085;68086;68087;68088;68089 57377;57378;57379;57380;57381;57382;57383;57384;57385;57386;57387;57388;57389;57390;57391;57392;57393;57394;57395;57396;57397;57398;57399;57400;57401;57402;57403;57404;57405;57406;57407;57408;57409;57410;57411;57412;57413;57414;57415;57416;57417;57418;57419;57420;57421;57422;57423;57424 57403 48 3407700000 105720000 455750000 YEESLADSDNK ACTQLVDNLVEHILKYEESLADSDNKGVNS HILKYEESLADSDNKGVNSGRLVACITTLF K Y E N K G 1 0 1 2 0 0 2 0 0 0 1 1 0 0 0 2 0 0 1 0 0 0 11 0 1269.5361 Q6KC79 Q6KC79 1985 1995 NIPBL Nipped-B-like protein yes yes 2 0.0098069 91.584 By MS/MS 1 0 1 1 4278800 0 0 4278800 15569 1480 16321 68090 57425 57425 1 0 0 921930 YEGFFGLYR LMYKNSFDCFKKVLRYEGFFGLYRGLLPQL FKKVLRYEGFFGLYRGLLPQLLGVAPEKAI R Y E Y R G 0 1 0 0 0 0 1 2 0 0 1 0 0 2 0 0 0 0 2 0 0 0 9 0 1150.5447 Q9UJS0;O75746 Q9UJS0 384 392 SLC25A13;SLC25A12 Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1 yes no 2 0.00019971 140.98 By MS/MS 3 0 1 1 4625800 0 0 4625800 15570 2170 16322 68091 57426 57426 1 0 0 897180 YEILTPNAIPK QGFPNRIVFQEFRQRYEILTPNAIPKGFMD FRQRYEILTPNAIPKGFMDGKQACERMIRA R Y E P K G 1 0 1 0 0 0 1 0 0 2 1 1 0 0 2 0 1 0 1 0 0 0 11 0 1257.6969 P35580;Q7Z406 P35580 728 738 MYH10;MYH14 Myosin-10;Myosin-14 no no 2 0.021613 83.309 By MS/MS By matching 2 0.816 1 1 1 2 1 21399000 0 20778000 620680 15571 753;1531 16323 68092;68093;68094 57427 57427 1 0 10075000 120380 YEILTPNSIPK QGFPNRVVFQEFRQRYEILTPNSIPKGFMD FRQRYEILTPNSIPKGFMDGKQACVLMIKA R Y E P K G 0 0 1 0 0 0 1 0 0 2 1 1 0 0 2 1 1 0 1 0 0 0 11 0 1273.6918 P35579 P35579 721 731 MYH9 Myosin-9 yes yes 2 0.00032729 122.94 By MS/MS 1.5 0.5 1 1 2 109060000 0 109060000 0 15572 752 16324 68095;68096 57428;57429;57430 57429 3 0 52937000 0 YEITEQR PRHQEGEIFDTEKEKYEITEQRKIDQKAVD IFDTEKEKYEITEQRKIDQKAVDSQILPKI K Y E Q R K 0 1 0 0 0 1 2 0 0 1 0 0 0 0 0 0 1 0 1 0 0 0 7 0 937.45051 Q02878 Q02878 240 246 RPL6 60S ribosomal protein L6 yes yes 2 0.0086919 122.79 By MS/MS By MS/MS 6 0 2 1 1 43066000 0 15856000 27210000 15573 1149 16325 68097;68098 57431;57432 57432 1 0 5488800 4070900 YEIVDTLGEGAFGK EGHLICQSGDVLRARYEIVDTLGEGAFGKV RYEIVDTLGEGAFGKVVECIDHGMDGMHVA R Y E G K V 1 0 0 1 0 0 2 3 0 1 1 1 0 1 0 0 1 0 1 1 0 0 14 0 1497.7351 Q9HAZ1;P49759 Q9HAZ1 159 172 CLK4;CLK1 Dual specificity protein kinase CLK4;Dual specificity protein kinase CLK1 yes no 2 0.00061969 141.88 By MS/MS 4 0 1 1 9313600 0 0 9313600 15574 2005 16326 68099 57433 57433 1 0 0 1521200 YEKDIAAYR DKQPYEQKAAKLKEKYEKDIAAYRAKGKSE AKLKEKYEKDIAAYRAKGKSEAGKKGPGRP K Y E Y R A 2 1 0 1 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 9 1 1127.5611 P09429;P26583 P26583 155 163 HMGB1;HMGB2 High mobility group protein B1;High mobility group protein B2 no no 2 0.004241 117.4 By MS/MS By matching 6.67 0.471 1 2 2 1 23768000 0 10488000 13280000 15575 670;484 16327 68100;68101;68102 57434;57435 57435 2 0 4890200 2356500 YELGRPAANTK RKTGGKRKPYHKKRKYELGRPAANTKIGPR KKRKYELGRPAANTKIGPRRIHTVRVRGGN K Y E T K I 2 1 1 0 0 0 1 1 0 0 1 1 0 0 1 0 1 0 1 0 0 0 11 1 1218.6357 P62241 P62241 27 37 RPS8 40S ribosomal protein S8 yes yes 2;3 0.00035895 145.46 By MS/MS By matching 6.5 0.5 2 2 3 1 60811000 0 56579000 4232000 15576 1008 16328 68103;68104;68105;68106 57436;57437;57438 57438 3 0 31719000 633160 YELISETGGSHDK KNPVMELNEKRRGLKYELISETGGSHDKRF LKYELISETGGSHDKRFVMEVEVDGQKFQG K Y E D K R 0 0 0 1 0 0 2 2 1 1 1 1 0 0 0 2 1 0 1 0 0 0 13 0 1434.6627 Q12906;Q96SI9 Q12906 541 553 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2;3 0.018085 77.64 By matching By MS/MS 2.75 0.829 2 1 1 1 3 22497000 0 2051700 20446000 15577 1211;1834 16329 68107;68108;68109;68110 57439;57440 57440 1 0 923930 3790200 YELISETGGSHDKR KNPVMELNEKRRGLKYELISETGGSHDKRF KYELISETGGSHDKRFVMEVEVDGQKFQGA K Y E K R F 0 1 0 1 0 0 2 2 1 1 1 1 0 0 0 2 1 0 1 0 0 0 14 1 1590.7638 Q12906;Q96SI9 Q12906 541 554 ILF3;STRBP Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein no no 2;3 2.3213E-06 162.93 By MS/MS By MS/MS 3.2 1.94 2 4 5 1 2 1 8 7 277900000 0 105730000 172170000 15578 1211;1834 16330 68111;68112;68113;68114;68115;68116;68117;68118;68119;68120;68121;68122;68123;68124;68125 57441;57442;57443;57444;57445;57446;57447;57448;57449;57450;57451;57452;57453;57454 57443 13 0 45920000 35353000 YELQLANPK WNYNFMGVRHDPNMKYELQLANPKEFYHEV HDPNMKYELQLANPKEFYHEVHRPSHFLNF K Y E P K E 1 0 1 0 0 1 1 0 0 0 2 1 0 0 1 0 0 0 1 0 0 0 9 0 1074.571 Q6P2Q9 Q6P2Q9 2294 2302 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.00045939 119.29 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 43369000 0 18295000 25074000 15579 1490 16331 68126;68127;68128 57455;57456 57455 2 0 8942200 5421900 YELQQLEGSSDR SEILSKKQNELKNVKYELQQLEGSSDRILE NVKYELQQLEGSSDRILELDQELIKAEREL K Y E D R I 0 1 0 1 0 2 2 1 0 0 2 0 0 0 0 2 0 0 1 0 0 0 12 0 1423.6579 Q92878 Q92878 462 473 RAD50 DNA repair protein RAD50 yes yes 2 0.018081 86.014 By matching By MS/MS 1.5 0.5 1 1 1 1 12128000 0 1910200 10218000 15580 1726 16332 68129;68130 57457 57457 1 0 933680 2309000 YENEVALR QIDNARLAADDFRLKYENEVALRQSVEADI ADDFRLKYENEVALRQSVEADINGLRRVLD K Y E L R Q 1 1 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 8 0 992.49271 P13645;CON__P13645 P13645 238 245 KRT10 Keratin, type I cytoskeletal 10 yes no 2 2.383E-07 163.67 By MS/MS By MS/MS By MS/MS 5.76 3.02 4 2 2 2 3 3 3 3 3 4 13 6 10 4727400000 3726600000 77503000 923280000 + 15581 56 16333 68131;68132;68133;68134;68135;68136;68137;68138;68139;68140;68141;68142;68143;68144;68145;68146;68147;68148;68149;68150;68151;68152;68153;68154;68155;68156;68157;68158;68159 57458;57459;57460;57461;57462;57463;57464;57465;57466;57467;57468;57469;57470;57471;57472;57473;57474;57475;57476;57477;57478;57479;57480;57481;57482;57483;57484;57485;57486;57487;57488;57489 57469 32 3554600000 71059000 355920000 YENYELTLK SDLQSGIIKNTASLKYENYELTLKSDTNGK NTASLKYENYELTLKSDTNGKYKNFATSNK K Y E L K S 0 0 1 0 0 0 2 0 0 0 2 1 0 0 0 0 1 0 2 0 0 0 9 0 1171.5761 P04114 P04114 1563 1571 APOB Apolipoprotein B-100;Apolipoprotein B-48 yes yes 2 0.00091072 110.41 By MS/MS By matching By matching 4.25 1.3 2 1 1 1 1 2 14930000 5643500 1745000 7541100 + 15582 411 16334 68160;68161;68162;68163 57490 57490 1 6511300 743910 1091900 YEQGFITDPVVLSPK CTPEFQANEVRKVKKYEQGFITDPVVLSPK YEQGFITDPVVLSPKDRVRDVFEAKARHGF K Y E P K D 0 0 0 1 0 1 1 1 0 1 1 1 0 1 2 1 1 0 1 2 0 0 15 0 1691.877 P12268 P12268 110 124 IMPDH2 Inosine-5-monophosphate dehydrogenase 2 yes yes 2 0.015942 71.548 By MS/MS 4 0 1 1 6882100 0 6882100 0 15583 535 16335 68164 57491 57491 1 0 2283900 0 YESLTDPSK RELISNASDALDKIRYESLTDPSKLDSGKE ALDKIRYESLTDPSKLDSGKELKIDIIPNP R Y E S K L 0 0 0 1 0 0 1 0 0 0 1 1 0 0 1 2 1 0 1 0 0 0 9 0 1038.487 P07900;Q58FF6;P08238;Q58FF7;Q58FF8 P08238 56 64 HSP90AA1;HSP90AB4P;HSP90AB1;HSP90AB3P;HSP90AB2P Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2 no no 2 0.0010753 109.71 By MS/MS By MS/MS 2.67 0.471 1 2 2 1 29670000 0 6132000 23538000 15584 466;469;1431 16336 68165;68166;68167 57492;57493 57493 2 0 2688900 4565300 YESSALPSGQLTSLSEYASR ATEQEVKEDIAKLLRYESSALPSGQLTSLS LPSGQLTSLSEYASRMRAGTRNIYYLCAPN R Y E S R M 2 1 0 0 0 1 2 1 0 0 3 0 0 0 1 6 1 0 2 0 0 0 20 0 2145.0226 Q12931 Q12931 470 489 TRAP1 Heat shock protein 75 kDa, mitochondrial yes yes 2 3.8462E-14 153.24 By matching By MS/MS 3 0 2 1 1 12420000 1382500 0 11038000 15585 1212 16337 68168;68169 57494 57494 1 1595100 0 2140800 YESSSYTDQFSR VEKQASRDLEQPTYRYESSSYTDQFSRNYE TYRYESSSYTDQFSRNYEHRLRYEDRVPMY R Y E S R N 0 1 0 1 0 1 1 0 0 0 0 0 0 1 0 4 1 0 2 0 0 0 12 0 1468.6107 Q07157 Q07157 1061 1072 TJP1 Tight junction protein ZO-1 yes yes 2 3.647E-25 197.06 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 13132000 0 4982400 8149200 15586 1177 16338 68170;68171;68172 57495;57496 57496 2 0 2380800 1755900 YETELAMR QIDNARLAADDFRVKYETELAMRQSVENDI ADDFRVKYETELAMRQSVENDIHGLRKVID K Y E M R Q 1 1 0 0 0 0 2 0 0 0 1 0 1 0 0 0 1 0 1 0 0 0 8 0 1011.4695 CON__P05784;P05783 P05783 168 175 KRT18 Keratin, type I cytoskeletal 18 no no 2 0.00021916 138.24 By MS/MS By MS/MS 3.4 1.02 1 2 1 1 2 3 216530000 0 1627400 214900000 + 15587 436;48 16339 68173;68174;68175;68176;68177 57497;57498;57499;57500 57498 4 0 708960 31320000 YETELNLR QIDNARLAADDFRTKYETELNLRMSVEADI ADDFRTKYETELNLRMSVEADINGLRRVLD K Y E L R M 0 1 1 0 0 0 2 0 0 0 2 0 0 0 0 0 1 0 1 0 0 0 8 0 1036.5189 CON__P02533;P02533;CON__Q6IFX2 CON__P02533 204 211 KRT14 Keratin, type I cytoskeletal 14 no no 2 0.0015256 114.6 By MS/MS 2.5 1.5 1 1 2 26389000 26389000 0 0 + 15588 35;91 16340 68178;68179 57501;57502 57501 2 23783000 0 0 YETSSTSAGDRYDSLLGR EGSNKKETQTDSISRYETSSTSAGDRYDSL SSTSAGDRYDSLLGRSGSYSYLEERKPYSS R Y E G R S 1 2 0 2 0 0 1 2 0 0 2 0 0 0 0 4 2 0 2 0 0 0 18 1 1976.9076 O14974 O14974 890 907 PPP1R12A Protein phosphatase 1 regulatory subunit 12A yes yes 3 1.6379E-09 151.48 By MS/MS 2 0 1 1 3881200 0 3881200 0 15589 156 16341 68180 57503 57503 1 0 1747700 0 YETVIMPVFGIATPFHIATIK KEPHIREMKIYIDKKYETVIMPVFGIATPF PVFGIATPFHIATIKNISMSVEGDYTYLRI K Y E I K N 2 0 0 0 0 0 1 1 1 4 0 1 1 2 2 0 3 0 1 2 0 0 21 0 2347.265 Q9Y5B9 Q9Y5B9 535 555 SUPT16H FACT complex subunit SPT16 yes yes 2;3 1.059E-11 117.55 By MS/MS By MS/MS 1.83 0.687 2 3 1 1 5 66924000 0 8280600 58644000 15590 2296 16342 68181;68182;68183;68184;68185;68186 57504;57505;57506;57507;57508 57504 5 0 3728900 12713000 YEVTSGGGGTSR TLGRMIRAESGPDLRYEVTSGGGGTSRMYY DLRYEVTSGGGGTSRMYYSRRGVITDQNSD R Y E S R M 0 1 0 0 0 0 1 4 0 0 0 0 0 0 0 2 2 0 1 1 0 0 12 0 1169.5313 P15924 P15924 28 39 DSP Desmoplakin yes yes 2 0.00024748 130.94 By MS/MS 1.5 0.5 1 1 2 3823100 3823100 0 0 15591 572 16343 68187;68188 57509 57509 1 3973500 0 0 YFDLGLPNR IKEKLILPHVDIQLKYFDLGLPNRDQTDDQ VDIQLKYFDLGLPNRDQTDDQVTIDSALAT K Y F N R D 0 1 1 1 0 0 0 1 0 0 2 0 0 1 1 0 0 0 1 0 0 0 9 0 1093.5556 P48735 P48735 81 89 IDH2 Isocitrate dehydrogenase [NADP], mitochondrial yes yes 2 0.0029901 101.64 By MS/MS 5 0 1 1 2502200 0 0 2502200 15592 849 16344 68189 57510 57510 1 0 0 349010 YFEITDESPYVHYLNTFSSK TSIIYLCGKGDSSIRYFEITDESPYVHYLN DESPYVHYLNTFSSKEPQRGMGYMPKRGLD R Y F S K E 0 0 1 1 0 0 2 0 1 1 1 1 0 2 1 3 2 0 3 1 0 0 20 0 2439.1271 Q9ULV4 Q9ULV4 292 311 CORO1C Coronin-1C yes yes 2;3 1.3866E-45 209.39 By MS/MS 4.8 0.748 2 2 1 5 101200000 0 0 101200000 15593 2192 16345 68190;68191;68192;68193;68194 57511;57512;57513;57514 57512 4 0 0 15609000 YFGVLQR HSLMAAERVKAWTSRYFGVLQRSLYVACTA RVKAWTSRYFGVLQRSLYVACTALALQLVM R Y F Q R S 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 7 0 881.47594 Q8IXM6 Q8IXM6 92 98 NRM Nurim yes yes 2 0.021952 99.511 By matching By MS/MS By matching 6.67 0.471 1 2 1 1 1 17891000 2008400 5503100 10379000 15594 1585 16346 68195;68196;68197 57515 57515 1 2674200 3159900 1841700 YFHVVIAGPQDSPFEGGTFK PVPGIKAEPDESNARYFHVVIAGPQDSPFE IAGPQDSPFEGGTFKLELFLPEEYPMAAPK R Y F F K L 1 0 0 1 0 1 1 3 1 1 0 1 0 3 2 1 1 0 1 2 0 0 20 0 2195.0688 P61088 P61088 34 53 UBE2N Ubiquitin-conjugating enzyme E2 N yes yes 3 0.00010159 75.239 By matching By MS/MS 8 0 2 1 1 7588500 0 916910 6671600 15595 978 16347 68198;68199 57516 57516 1 0 417160 1022800 YFIDSTNLK DLPGGGLHRCLACARYFIDSTNLKTHFRSK CLACARYFIDSTNLKTHFRSKDHKKRLKQL R Y F L K T 0 0 1 1 0 0 0 0 0 1 1 1 0 1 0 1 1 0 1 0 0 0 9 0 1099.555 O00488 O00488 69 77 ZNF593 Zinc finger protein 593 yes yes 2 0.0030001 101.6 By MS/MS 8 0 1 1 5692400 0 5692400 0 15596 125 16348 68200 57517 57517 1 0 2589800 0 YFIHYSGWNK EAKCVKVAIKDKQVKYFIHYSGWNKKSAVR DKQVKYFIHYSGWNKKSAVRPRRSEKSLKT K Y F N K K 0 0 1 0 0 0 0 1 1 1 0 1 0 1 0 1 0 1 2 0 0 0 10 0 1313.6193 Q9UBU8 Q9UBU8 42 51 MORF4L1 Mortality factor 4-like protein 1 yes yes 2 0.0072007 93.166 By MS/MS 5 0 1 1 6894300 0 0 6894300 15597 2135 16349 68201 57518 57518 1 0 0 961640 YFILPDSLPLDTLLVDVEPK PVQLETLSIRGNNIRYFILPDSLPLDTLLV DSLPLDTLLVDVEPKVKSKKREAVAGRGRG R Y F P K V 0 0 0 3 0 0 1 0 0 1 5 1 0 1 3 1 1 0 1 2 0 0 20 0 2286.2399 P62314 P62314 67 86 SNRPD1 Small nuclear ribonucleoprotein Sm D1 yes yes 2;3 0.0012235 70.412 By MS/MS 1 0 2 2 5860500 0 0 5860500 15598 1022 16350 68202;68203 57519;57520 57519 2 0 0 1262700 YFLHDDRDDGVDYWAK KEEEWDPEYTPKSKKYFLHDDRDDGVDYWA FLHDDRDDGVDYWAKRGRGRGTFQRGRGRF K Y F A K R 1 1 0 5 0 0 0 1 1 0 1 1 0 1 0 0 0 1 2 1 0 0 16 1 2013.8857 Q9NYF8 Q9NYF8 846 861 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 2;3;4 1.3592E-11 176.91 By MS/MS 2 0.632 1 3 1 5 76442000 0 0 76442000 15599 2097 16351 68204;68205;68206;68207;68208 57521;57522;57523 57522 3 0 0 17158000 YFLHQSHEER YYFDRDDVALKNFAKYFLHQSHEEREHAEK KNFAKYFLHQSHEEREHAEKLMKLQNQRGG K Y F E R E 0 1 0 0 0 1 2 0 2 0 1 0 0 1 0 1 0 0 1 0 0 0 10 0 1344.6211 P02794 P02794 55 64 FTH1 Ferritin heavy chain;Ferritin heavy chain, N-terminally processed yes yes 2;3 0.00051448 128.36 By MS/MS 7.75 0.829 2 1 1 4 23126000 0 0 23126000 15600 403 16352 68209;68210;68211;68212 57524;57525 57524 2 0 0 4383100 YFNEGTVLAHYADVLGLLLR IYQSVKNEGRATIGRYFNEGTVLAHYADVL TVLAHYADVLGLLLRLRQICCHTYLLTNAV R Y F L R L 2 1 1 1 0 0 1 2 1 0 5 0 0 1 0 0 1 0 2 2 0 0 20 0 2263.2001 Q14527 Q14527 692 711 HLTF Helicase-like transcription factor yes yes 3 0.00051861 66.325 By MS/MS 2 0 1 1 3804900 0 0 3804900 15601 1303 16353 68213 57526 57526 1 0 0 859820 YFNSYTLTGR GPESDAQYQFTGIKKYFNSYTLTGRMNCVL TGIKKYFNSYTLTGRMNCVLATYGSIALIV K Y F G R M 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 1 2 0 2 0 0 0 10 0 1220.5826 Q96IX5 Q96IX5 18 27 USMG5 Up-regulated during skeletal muscle growth protein 5 yes yes 2 3.6608E-23 195.06 By MS/MS By MS/MS 10 0 2 1 1 23599000 0 2334700 21265000 15602 1799 16354 68214;68215 57527;57528 57528 2 0 11812000 46508000 YFPTQALNFAFK GVLSFWRGNLANVIRYFPTQALNFAFKDKY VIRYFPTQALNFAFKDKYKQIFLGGVDKRT R Y F F K D 2 0 1 0 0 1 0 0 0 0 1 1 0 3 1 0 1 0 1 0 0 0 12 0 1445.7343 P05141;Q9H0C2;P12235;P12236 P05141 81 92 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 2 0.00097035 118.5 By MS/MS By MS/MS By MS/MS 4.85 2.77 3 1 1 1 2 3 1 1 3 7 3 107930000 11441000 50583000 45901000 15603 427;533;534 16355 68216;68217;68218;68219;68220;68221;68222;68223;68224;68225;68226;68227;68228 57529;57530;57531;57532;57533;57534;57535;57536;57537;57538;57539 57535 11 19679000 18702000 9510300 YFPTQALNFAFKDK GVLSFWRGNLANVIRYFPTQALNFAFKDKY RYFPTQALNFAFKDKYKQIFLGGVDKRTQF R Y F D K Y 2 0 1 1 0 1 0 0 0 0 1 2 0 3 1 0 1 0 1 0 0 0 14 1 1688.8562 P05141;Q9H0C2;P12235;P12236 P05141 81 94 SLC25A5;SLC25A31;SLC25A4;SLC25A6 ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 1;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed no no 3 0.012989 63.128 By MS/MS 6 0 1 1 4182300 0 4182300 0 15604 427;533;534 16356 68229 57540 57540 1 0 1447800 0 YFQIGTIVDNPADFYHSR PKRFYKKNDRDGFPKYFQIGTIVDNPADFY IGTIVDNPADFYHSRIPKKQRKRTIVEELL K Y F S R I 1 1 1 2 0 1 0 1 1 2 0 0 0 2 1 1 1 0 2 1 0 0 18 0 2142.0171 Q5QJE6 Q5QJE6 687 704 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 yes yes 2;3 2.9642E-09 154.07 By MS/MS By MS/MS 3.67 1.49 2 1 1 1 1 1 5 28228000 0 3075500 25153000 15605 1442 16357 68230;68231;68232;68233;68234;68235 57541;57542;57543;57544 57544 3 0 1384900 4537700 YFQINQDEEEEEDED WLRVVANSKESYELRYFQINQDEEEEEDED YFQINQDEEEEEDED_______________ R Y F E D - 0 0 1 3 0 2 6 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 15 0 1930.7228 P35268 P35268 114 128 RPL22 60S ribosomal protein L22 yes yes 2 0.016571 71.03 By MS/MS 8 0 1 1 2596700 2596700 0 0 15606 747 16358 68236 57545 57545 1 2229300 0 0 YFSMTEVDR VDPGEHYILKTLGIKYFSMTEVDRLGIGKV KTLGIKYFSMTEVDRLGIGKVMEETLSYLL K Y F D R L 0 1 0 1 0 0 1 0 0 0 0 0 1 1 0 1 1 0 1 1 0 0 9 0 1146.5016 P05089 P05089 197 205 ARG1 Arginase-1 yes yes 2 0.0070215 93.429 By MS/MS 9.5 0.5 1 1 2 7070100 7070100 0 0 15607 422 16359 68237;68238 57546 57546 1 5006800 0 0 YFSSMAEFLK NPQAAEKKVAEANQKYFSSMAEFLKVKGEK EANQKYFSSMAEFLKVKGEKSGLMST____ K Y F L K V 1 0 0 0 0 0 1 0 0 0 1 1 1 2 0 2 0 0 1 0 0 0 10 0 1221.574 Q8WWY3 Q8WWY3 479 488 PRPF31 U4/U6 small nuclear ribonucleoprotein Prp31 yes yes 2 0.018345 83.948 By matching By MS/MS By MS/MS 4 0 3 1 1 1 17097000 1203300 7464900 8428900 15608 1691 16360 68239;68240;68241 57547;57548 57548 2 938790 2477300 1376700 YFSTTEDYDHEITGLR GPTWAGKMYGPGGGKYFSTTEDYDHEITGL FSTTEDYDHEITGLRVSVGLLLVKSVQVKL K Y F L R V 0 1 0 2 0 0 2 1 1 1 1 0 0 1 0 1 3 0 2 0 0 0 16 0 1945.8694 Q96DA0 Q96DA0 63 78 ZG16B Zymogen granule protein 16 homolog B yes yes 3 8.5787E-06 136.81 By MS/MS 1 0 1 1 6853300 6853300 0 0 15609 1763 16361 68242 57549 57549 1 6853300 0 0 YFWGNLPGMNR VMIDAKEVSAAHRARYFWGNLPGMNRPLAS HRARYFWGNLPGMNRPLASTVNDKLELQEC R Y F N R P 0 1 2 0 0 0 0 2 0 0 1 0 1 1 1 0 0 1 1 0 0 0 11 0 1353.6288 Q9Y6K1;Q9UBC3 Q9Y6K1 793 803 DNMT3A;DNMT3B DNA (cytosine-5)-methyltransferase 3A;DNA (cytosine-5)-methyltransferase 3B yes no 2 0.01821 85.212 By MS/MS 3 0 1 1 967690 0 967690 0 15610 2313 16362 68243 57550 57550 1 0 412530 0 YFYLLENLAWVK QLKGLEDTKSPQFNRYFYLLENLAWVKSYN FNRYFYLLENLAWVKSYNICFELEDCNEIF R Y F V K S 1 0 1 0 0 0 1 0 0 0 3 1 0 1 0 0 0 1 2 1 0 0 12 0 1557.8232 Q29RF7 Q29RF7 138 149 PDS5A Sister chromatid cohesion protein PDS5 homolog A yes yes 2 0.0097713 94.692 By MS/MS 1.5 0.5 1 1 2 6825000 0 0 6825000 15611 1405 16363 68244;68245 57551 57551 1 0 0 1509500 YFYVSAEQVVQGMK VHPEIINENGNPSYKYFYVSAEQVVQGMKE KYFYVSAEQVVQGMKEAQERLTGDAFRKKH K Y F M K E 1 0 0 0 0 2 1 1 0 0 0 1 1 1 0 1 0 0 2 3 0 0 14 0 1647.7967 O95881 O95881 139 152 TXNDC12 Thioredoxin domain-containing protein 12 yes yes 2 0.0041545 90.827 By MS/MS By matching 8 0 2 1 1 4861000 0 1916200 2944800 15612 347 16364 68246;68247 57552 57552 1 0 871820 451460 YGAATFTR SSTQDTVVALHALSKYGAATFTRTGKAAQV ALHALSKYGAATFTRTGKAAQVTIQSSGTF K Y G T R T 2 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 2 0 1 0 0 0 8 0 885.43447 P01023 P01023 1264 1271 A2M Alpha-2-macroglobulin no no 2 8.2782E-06 154.01 By MS/MS By matching 9.67 0.471 1 2 2 1 17009000 16491000 518260 0 15613 370 16365 68248;68249;68250 57553;57554 57553 2 16424000 2621900 0 YGAATFTSAR SSTQDTVVALHALSRYGAATFTSARKAAQV HALSRYGAATFTSARKAAQVTIQSSGTFST R Y G A R K 3 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 2 0 1 0 0 0 10 0 1043.5036 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 1268 1277 yes yes 2 5.1413E-07 157.91 By MS/MS 6.33 3.09 1 1 1 3 34151000 34151000 0 0 + 15614 28 16366 68251;68252;68253 57555;57556;57557 57557 3 29371000 0 0 YGAFLLR RMLKRFRQEKAVWIKYGAFLLRRSQAAASH QEKAVWIKYGAFLLRRSQAAASHRVLQRAL K Y G L R R 1 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 1 0 0 0 7 0 838.47012 Q14690 Q14690 1731 1737 PDCD11 Protein RRP5 homolog yes yes 2 0.0029862 130.84 By matching By MS/MS By MS/MS 1 0 3 1 1 1 18308000 924320 6826900 10557000 15615 1314 16367 68254;68255;68256 57558;57559 57559 2 924320 3336900 2274700 YGAHNYHPLPVALER QGPPTSDDIFEREYKYGAHNYHPLPVALER YGAHNYHPLPVALERGKGIYLWDVEGRKYF K Y G E R G 2 1 1 0 0 0 1 1 2 0 2 0 0 0 2 0 0 0 2 1 0 0 15 0 1735.8794 P04181 P04181 50 64 OAT Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form yes yes 3 0.0021503 75.01 By MS/MS 5 0 1 1 15051000 0 0 15051000 15616 412 16368 68257 57560 57560 1 0 0 2099300 YGAIRDIDLK PPDIRTKDIEDVFYKYGAIRDIDLKNRRGG DVFYKYGAIRDIDLKNRRGGPPFAFVEFED K Y G L K N 1 1 0 2 0 0 0 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 10 1 1162.6346 Q07955 Q07955 39 48 SRSF1 Serine/arginine-rich splicing factor 1 yes yes 2 0.0019539 120.33 By MS/MS 6 0 1 1 4550600 0 4550600 0 15617 1179 16369 68258 57561 57561 1 0 1575300 0 YGDGGSSFQSTTGHCVHMR GRDLNYCFSGMSDHRYGDGGSSFQSTTGHC GSSFQSTTGHCVHMRGLPYRATENDIYNFF R Y G M R G 0 1 0 1 1 1 0 4 2 0 0 0 1 1 0 3 2 0 1 1 0 0 19 0 2082.8636 P55795 P55795 276 294 HNRNPH2 Heterogeneous nuclear ribonucleoprotein H2 yes yes 3 1.7192E-13 171.08 By MS/MS 4.5 0.5 1 1 2 9334100 0 0 9334100 15618 944 16370 68259;68260 57562 57562 1 0 0 1375600 YGDGGSTFQSTTGHCVHMR GRDLNYCFSGMSDHRYGDGGSTFQSTTGHC GSTFQSTTGHCVHMRGLPYRATENDIYNFF R Y G M R G 0 1 0 1 1 1 0 4 2 0 0 0 1 1 0 2 3 0 1 1 0 0 19 0 2096.8793 P31943 P31943 276 294 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2;3;4 3.5881E-11 162.41 By matching By MS/MS By MS/MS 4.75 1.01 1 4 5 1 1 1 2 9 195240000 5796800 9576900 179870000 15619 722 16371 68261;68262;68263;68264;68265;68266;68267;68268;68269;68270;68271;68272 57563;57564;57565;57566;57567;57568 57564 6 4522500 2690500 26532000 YGDGIQLTR DCLMRAELIVQPELKYGDGIQLTRSRELDE VQPELKYGDGIQLTRSRELDECFAQANDQM K Y G T R S 0 1 0 1 0 1 0 2 0 1 1 0 0 0 0 0 1 0 1 0 0 0 9 0 1021.5193 P15924 P15924 95 103 DSP Desmoplakin yes yes 2 9.3233E-12 149.65 By MS/MS By MS/MS By MS/MS 4.75 4.02 4 1 1 2 5 1 2 70308000 23410000 18316000 28582000 15620 572 16372 68273;68274;68275;68276;68277;68278;68279;68280 57569;57570;57571;57572;57573;57574;57575 57570 7 24685000 8952600 7774800 YGDSEFTVQSTTGHCVHMR GRDLSYCLSGMYDHRYGDSEFTVQSTTGHC EFTVQSTTGHCVHMRGLPYKATENDIYNFF R Y G M R G 0 1 0 1 1 1 1 2 2 0 0 0 1 1 0 2 3 0 1 2 0 0 19 0 2210.9473 P52597 P52597 276 294 HNRNPF Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed yes yes 3;4 1.9868E-09 141.86 By matching By MS/MS 5.6 0.8 3 1 1 1 4 88358000 0 6581100 81777000 15621 910 16373 68281;68282;68283;68284;68285 57576;57577;57578 57576 3 0 1696400 11606000 YGDSGEQIAGFVK LNQKMEVQRRPWLVKYGDSGEQIAGFVKEF VKYGDSGEQIAGFVKEFSHIAFLTIKGAGH K Y G V K E 1 0 0 1 0 1 1 3 0 1 0 1 0 1 0 1 0 0 1 1 0 0 13 0 1369.6514 P10619 P10619 430 442 CTSA Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain yes yes 2 0.0053139 99.568 By MS/MS By matching 7.33 0.471 2 1 1 2 52376000 0 3971600 48404000 15622 513 16374 68286;68287;68288 57579 57579 1 0 2280500 8441500 YGDSLYR NLVDNVAKDYVRLMKYGDSLYRCKQLKRAA KDYVRLMKYGDSLYRCKQLKRAALGRMCTV K Y G Y R C 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 872.40283 Q9BZE4 Q9BZE4 119 125 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.0062434 126.24 By MS/MS By MS/MS 3 0 2 1 1 15974000 0 4660700 11313000 15623 1941 16375 68289;68290 57580;57581 57580 2 0 1986900 2194200 YGEDGLAGESVEFQNLATLKPSNK DATVRNSINQVVQLRYGEDGLAGESVEFQN SVEFQNLATLKPSNKAFEKKFRFDYTNERA R Y G N K A 2 0 2 1 0 1 3 3 0 0 3 2 0 1 1 2 1 0 1 1 0 0 24 1 2566.2551 P24928 P24928 891 914 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 3 3.6452E-10 91.883 By MS/MS 1 0 1 1 9115500 0 0 9115500 15624 653 16376 68291 57582 57582 1 0 0 1964100 YGEPGEVFINK PADITEDEFKRLFAKYGEPGEVFINKGKGF LFAKYGEPGEVFINKGKGFGFIKLESRALA K Y G N K G 0 0 1 0 0 0 2 2 0 1 0 1 0 1 1 0 0 0 1 1 0 0 11 0 1251.6136 P23246 P23246 320 330 SFPQ Splicing factor, proline- and glutamine-rich yes yes 2 4.9173E-10 172.25 By MS/MS By MS/MS By MS/MS 3.12 1.05 3 2 2 1 1 4 3 787880000 21971000 192500000 573420000 15625 638 16377 68292;68293;68294;68295;68296;68297;68298;68299 57583;57584;57585;57586;57587;57588;57589 57584 7 26472000 84032000 119250000 YGEPSEVFINR PTDITEEDFKRLFERYGEPSEVFINRDRGF LFERYGEPSEVFINRDRGFGFIRLESRTLA R Y G N R D 0 1 1 0 0 0 2 1 0 1 0 0 0 1 1 1 0 0 1 1 0 0 11 0 1309.6303 Q8WXF1 Q8WXF1 105 115 PSPC1 Paraspeckle component 1 yes yes 2 1.3821E-35 208.37 By MS/MS By MS/MS 3.67 0.471 1 2 1 2 117950000 0 22714000 95239000 15626 1695 16378 68300;68301;68302 57590;57591;57592 57590 3 0 7538100 17682000 YGEYEWVHKPR TLKLRSLQKGTFDSKYGEYEWVHKPREMDT FDSKYGEYEWVHKPREMDTSRRKFHL____ K Y G P R E 0 1 0 0 0 0 2 1 1 0 0 1 0 0 1 0 0 1 2 1 0 0 11 1 1462.6993 Q9H9Y2 Q9H9Y2 328 338 RPF1 Ribosome production factor 1 yes yes 3 0.0064462 79.693 By MS/MS 5 0 1 1 15324000 0 0 15324000 15627 1999 16379 68303 57593 57593 1 0 0 2137500 YGEYFPGTGDLR AFYTTDRVMTVSFHKYGEYFPGTGDLRDIG FHKYGEYFPGTGDLRDIGAGKGKYYAVNYP K Y G L R D 0 1 0 1 0 0 1 3 0 0 1 0 0 1 1 0 1 0 2 0 0 0 12 0 1373.6252 Q13547;Q92769 Q13547 201 212 HDAC1;HDAC2 Histone deacetylase 1;Histone deacetylase 2 no no 2 0.0012778 115.06 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 1 4 79514000 0 8364400 71150000 15628 1257;1721 16380 68304;68305;68306;68307;68308 57594;57595;57596;57597 57596 4 0 2775800 12022000 YGFLWPGLNVPLMK KRKDLNRGQIIGEGRYGFLWPGLNVPLMKN RYGFLWPGLNVPLMKNGAVQTIAQRSKEEQ R Y G M K N 0 0 1 0 0 0 0 2 0 0 3 1 1 1 2 0 0 1 1 1 0 0 14 0 1633.8691 P82675 P82675 137 150 MRPS5 28S ribosomal protein S5, mitochondrial yes yes 2 0.063845 61.65 By MS/MS 5 0.816 1 1 1 3 4990900 0 4990900 0 15629 1099 16381 68309;68310;68311 57598 57598 1 0 1465900 0 YGFYTHVFR MGIVSWGEGCDRDGKYGFYTHVFRLKKWIQ CDRDGKYGFYTHVFRLKKWIQKVIDRLGS_ K Y G F R L 0 1 0 0 0 0 0 1 1 0 0 0 0 2 0 0 1 0 2 1 0 0 9 0 1188.5716 CON__P00735;P00734 CON__P00735 603 611 F2 Prothrombin;Activation peptide fragment 1;Activation peptide fragment 2;Thrombin light chain;Thrombin heavy chain yes no 2 0.00085891 110.81 By MS/MS By MS/MS 6.33 3.4 1 1 1 1 2 2 4 28147000 6234500 0 21913000 + 15630 31 16382 68312;68313;68314;68315;68316;68317 57599;57600;57601 57599 3 9568400 0 11556000 YGGAPQALTLK LRDFLTPPLLSVRFRYGGAPQALTLKLPVT VRFRYGGAPQALTLKLPVTINKFFQPTEMA R Y G L K L 2 0 0 0 0 1 0 2 0 0 2 1 0 0 1 0 1 0 1 0 0 0 11 0 1117.6132 O95782 O95782 846 856 AP2A1 AP-2 complex subunit alpha-1 yes yes 2 0.024804 81.525 By MS/MS 2 0 1 1 10349000 0 0 10349000 15631 339 16383 68318 57602 57602 1 0 0 2338800 YGGDEIPFSPYR AYVPDVTGRYTILIKYGGDEIPFSPYRVRA LIKYGGDEIPFSPYRVRAVPTGDASKCTVT K Y G Y R V 0 1 0 1 0 0 1 2 0 1 0 0 0 1 2 1 0 0 2 0 0 0 12 0 1399.6408 P21333 P21333 1622 1633 FLNA Filamin-A yes yes 2 7.0288E-12 175.73 By matching By MS/MS By MS/MS 1.6 0.8 3 1 1 1 3 1 37086000 1398000 18321000 17366000 15632 623 16384 68319;68320;68321;68322;68323 57603;57604 57604 2 1398000 8767800 3741800 YGGDEIPYSPFR SYLPDMSGRYTITIKYGGDEIPYSPFRIHA TIKYGGDEIPYSPFRIHALPTGDASKCLVT K Y G F R I 0 1 0 1 0 0 1 2 0 1 0 0 0 1 2 1 0 0 2 0 0 0 12 0 1399.6408 Q14315 Q14315 1616 1627 FLNC Filamin-C yes yes 2 0.00069519 121.83 By MS/MS By MS/MS 1 0 2 1 1 13246000 0 9635100 3610600 15633 1298 16385 68324;68325 57605;57606 57605 1 0 4709500 777970 YGGISTASVDFEQPTR EKYGIPEPPEPKRRKYGGISTASVDFEQPT GGISTASVDFEQPTRDGLGSDNIGSRMLQA K Y G T R D 1 1 0 1 0 1 1 2 0 1 0 0 0 1 1 2 2 0 1 1 0 0 16 0 1726.8162 P98175 P98175 838 853 RBM10 RNA-binding protein 10 yes yes 2 2.6457E-13 184.03 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 17819000 0 5661300 12158000 15634 1117 16386 68326;68327;68328 57607;57608 57608 2 0 2549400 2689100 YGGPPPDSVYSGQQPSVGTEIFVGK ERTGYTLDVTTGQRKYGGPPPDSVYSGQQP SGQQPSVGTEIFVGKIPRDLFEDELVPLFE K Y G G K I 0 0 0 1 0 2 1 5 0 1 0 1 0 1 4 3 1 0 2 3 0 0 25 0 2565.2387 O60506 O60506 144 168 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q yes yes 2;3 1.7945E-51 199.65 By MS/MS By MS/MS 3.8 1.17 3 1 1 3 2 55724000 0 34094000 21630000 15635 227 16387 68329;68330;68331;68332;68333 57609;57610;57611;57612;57613;57614 57614 6 0 12447000 4195300 YGGPPPDSVYSGVQPGIGTEVFVGK ERTGYTLDVTTGQRKYGGPPPDSVYSGVQP SGVQPGIGTEVFVGKIPRDLYEDELVPLFE K Y G G K I 0 0 0 1 0 1 1 6 0 1 0 1 0 1 4 2 1 0 2 4 0 0 25 0 2506.238 O43390 O43390 147 171 HNRNPR Heterogeneous nuclear ribonucleoprotein R yes yes 2;3 9.413E-119 250.41 By matching By MS/MS By MS/MS 3.38 0.857 1 4 2 1 1 6 1 120070000 2689900 74847000 42538000 15636 195 16388 68334;68335;68336;68337;68338;68339;68340;68341 57615;57616;57617;57618;57619;57620;57621 57620 7 3103500 28052000 8250300 YGGPQHIVGSPFK TYTPMAPGNYLIAIKYGGPQHIVGSPFKAK IKYGGPQHIVGSPFKAKVTGPRLSGGHSLH K Y G F K A 0 0 0 0 0 1 0 3 1 1 0 1 0 1 2 1 0 0 1 1 0 0 13 0 1385.7092 Q14315 Q14315 2577 2589 FLNC Filamin-C yes yes 3 0.059185 40.552 By MS/MS 1 0 1 1 9061600 0 9061600 0 15637 1298 16389 68342 57622 57622 1 0 4429200 0 YGGPYHIGGSPFK TYTPMAPGSYLISIKYGGPYHIGGSPFKAK IKYGGPYHIGGSPFKAKVTGPRLVSNHSLH K Y G F K A 0 0 0 0 0 0 0 4 1 1 0 1 0 1 2 1 0 0 2 0 0 0 13 0 1378.667 P21333 P21333 2501 2513 FLNA Filamin-A yes yes 2;3 0.0034144 104.82 By matching By MS/MS 1 0 3 1 2 30780000 1111600 0 29669000 15638 623 16390 68343;68344;68345 57623;57624 57624 2 1111600 0 6392600 YGGQPLFSEKFPTLWSGAR DTYTSDLHFQVSKDRYGGQPLFSEKFPTLW PLFSEKFPTLWSGARSTYGVTKGKVCFEAK R Y G A R S 1 1 0 0 0 1 1 3 0 0 2 1 0 2 2 2 1 1 1 0 0 0 19 1 2140.0742 Q1KMD3 Q1KMD3 264 282 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 3 1.6123E-06 105.77 By MS/MS 2 0 1 1 3472700 0 3472700 0 15639 1404 16391 68346 57625 57625 1 0 1563800 0 YGGQPVPNFPSK TYIPLCPGAYTVTIKYGGQPVPNFPSKLQV TIKYGGQPVPNFPSKLQVEPAVDTSGVQCY K Y G S K L 0 0 1 0 0 1 0 2 0 0 0 1 0 1 3 1 0 0 1 1 0 0 12 0 1289.6404 P21333 P21333 1235 1246 FLNA Filamin-A yes yes 2 0.017831 86.18 By MS/MS By MS/MS 1 0 2 1 1 37494000 0 16715000 20779000 15640 623 16392 68347;68348 57626;57627 57626 2 0 8170100 4477200 YGGTFQNVSVQLPITLNK VSDFTEAPVLNIQFRYGGTFQNVSVQLPIT TFQNVSVQLPITLNKFFQPTEMASQDFFQR R Y G N K F 0 0 2 0 0 2 0 2 0 1 2 1 0 1 1 1 2 0 1 2 0 0 18 0 1978.0524 O94973 O94973 808 825 AP2A2 AP-2 complex subunit alpha-2 yes yes 2 2.4861E-09 155.66 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 13160000 0 5817200 7342700 15641 306 16393 68349;68350;68351 57628;57629 57628 2 0 2619600 1605300 YGIKPEWMMIHR NKDPKFAEMEERFYRYGIKPEWMMIHRILN FYRYGIKPEWMMIHRILNHSVDKKGHVHYL R Y G H R I 0 1 0 0 0 0 1 1 1 2 0 1 2 0 1 0 0 1 1 0 0 0 12 1 1559.7741 Q14839;Q8TDI0 Q14839 615 626 CHD4;CHD5 Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5 no no 3 0.002639 91.961 By MS/MS 1.5 0.5 1 1 2 20183000 0 0 20183000 15642 1321;1662 16394 68352;68353 57630 57630 1 0 0 4370400 YGLFPANYVELR EMIDDGWWRGVCKGRYGLFPANYVELRQ__ KGRYGLFPANYVELRQ______________ R Y G L R Q 1 1 1 0 0 0 1 1 0 0 2 0 0 1 1 0 0 0 2 1 0 0 12 0 1440.7402 Q14247 Q14247 538 549 CTTN Src substrate cortactin yes yes 2 0.00040353 127.76 By MS/MS By MS/MS 3 0 2 1 1 7816300 0 2367200 5449100 15643 1295 16395 68354;68355 57631;57632 57632 2 0 1009100 1056900 YGLIFHSTFIGR KALFRALKTRGNTPKYGLIFHSTFIGRAAA TPKYGLIFHSTFIGRAAAKNKGRISRYLAN K Y G G R A 0 1 0 0 0 0 0 2 1 2 1 0 0 2 0 1 1 0 1 0 0 0 12 0 1409.7456 O00567 O00567 348 359 NOP56 Nucleolar protein 56 yes yes 2;3 0.002182 108.43 By MS/MS By MS/MS 3.75 1.2 1 3 2 1 1 1 7 105700000 0 14549000 91151000 15644 130 16396 68356;68357;68358;68359;68360;68361;68362;68363 57633;57634;57635;57636;57637;57638 57637 6 0 6202100 17112000 YGLIGLNGIGK ELLSDTKLELNSGRRYGLIGLNGIGKSMLL SGRRYGLIGLNGIGKSMLLSAIGKREVPIP R Y G G K S 0 0 1 0 0 0 0 4 0 2 2 1 0 0 0 0 0 0 1 0 0 0 11 0 1103.6339 Q9UG63 Q9UG63 114 124 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.066675 69.825 By MS/MS 3 0 1 1 4605500 0 4605500 0 15645 2142 16397 68364 57639 57639 1 0 1963300 0 YGLIYHASLVGQTSPK KALFRALKSRRDTPKYGLIYHASLVGQTSP GLIYHASLVGQTSPKHKGKISRMLAAKTVL K Y G P K H 1 0 0 0 0 1 0 2 1 1 2 1 0 0 1 2 1 0 2 1 0 0 16 0 1732.9148 Q9Y2X3 Q9Y2X3 338 353 NOP58 Nucleolar protein 58 yes yes 2;3 7.6073E-13 181.66 By MS/MS By MS/MS 3.89 0.737 3 4 2 3 6 208690000 0 52910000 155780000 15646 2254 16398 68365;68366;68367;68368;68369;68370;68371;68372;68373 57640;57641;57642;57643;57644;57645;57646;57647 57643 8 0 18167000 26654000 YGLVFFR GKVTSVQIHGTSEERYGLVFFRQQEDQEKA IHGTSEERYGLVFFRQQEDQEKALTASKGK R Y G F R Q 0 1 0 0 0 0 0 1 0 0 1 0 0 2 0 0 0 0 1 1 0 0 7 0 900.48577 Q96T58 Q96T58 378 384 SPEN Msx2-interacting protein yes yes 2 0.0029862 130.84 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 10271000 0 574940 9696200 15647 1839 16399 68374;68375;68376;68377 57648;57649 57649 2 0 281020 2066900 YGLVTYATYPK VNLIEKVASYGVKPRYGLVTYATYPKIWVK VKPRYGLVTYATYPKIWVKVSEADSSNADW R Y G P K I 1 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 2 0 3 1 0 0 11 0 1274.6547 P00751 P00751 309 319 CFB Complement factor B;Complement factor B Ba fragment;Complement factor B Bb fragment yes yes 2 0.015683 86.624 By MS/MS 9.5 0.5 1 1 2 4944100 4944100 0 0 15648 365 16400 68378;68379 57650 57650 1 4360700 0 0 YGMPPQDAFTTQWLVR FNARQRKAFLNAIMRYGMPPQDAFTTQWLV GMPPQDAFTTQWLVRDLRGKSEKEFKAYVS R Y G V R D 1 1 0 1 0 2 0 1 0 0 1 0 1 1 2 0 2 1 1 1 0 0 16 0 1908.9193 Q14839 Q14839 1431 1446 CHD4 Chromodomain-helicase-DNA-binding protein 4 yes yes 2 3.9338E-05 145.91 By MS/MS By MS/MS 1.2 0.4 4 1 2 3 29368000 0 6173400 23194000 15649 1321 16401;16402 68380;68381;68382;68383;68384 57651;57652;57653;57654;57655;57656;57657 57653 598 7 0 3017500 5053000 YGNQLVR QEFYQDDELGKKQFKYGNQLVRLAHREQVA ELGKKQFKYGNQLVRLAHREQVALYVDLDD K Y G V R L 0 1 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 7 0 848.45045 P33993 P33993 33 39 MCM7 DNA replication licensing factor MCM7 yes yes 2 0.044296 74.396 By MS/MS 3 0 1 1 1145800 0 1145800 0 15650 733 16403 68385 57658 57658 0 0 488440 0 YGPIADVSIVYDQQSR SLYTTERDLREVFSKYGPIADVSIVYDQQS GPIADVSIVYDQQSRRSRGFAFVYFENVDD K Y G S R R 1 1 0 2 0 2 0 1 0 2 0 0 0 0 1 2 0 0 2 2 0 0 16 0 1809.8897 P62995 P62995 141 156 TRA2B Transformer-2 protein homolog beta yes yes 2;3 2.1509E-59 228.74 By MS/MS By MS/MS 4.79 1.74 1 1 1 2 3 4 2 5 9 268300000 0 102130000 166170000 15651 1055 16404 68386;68387;68388;68389;68390;68391;68392;68393;68394;68395;68396;68397;68398;68399 57659;57660;57661;57662;57663;57664;57665;57666;57667;57668;57669;57670 57662 12 0 33726000 25117000 YGPIADVSIVYDQQSRR SLYTTERDLREVFSKYGPIADVSIVYDQQS PIADVSIVYDQQSRRSRGFAFVYFENVDDA K Y G R R S 1 2 0 2 0 2 0 1 0 2 0 0 0 0 1 2 0 0 2 2 0 0 17 1 1965.9908 P62995 P62995 141 157 TRA2B Transformer-2 protein homolog beta yes yes 2;3 1.5067E-60 229.29 By MS/MS 6 0 2 2 33469000 0 33469000 0 15652 1055 16405 68400;68401 57671;57672 57672 2 0 11586000 0 YGPIVDVYVPLDFYTR ADDTRSEDLRREFGRYGPIVDVYVPLDFYT GPIVDVYVPLDFYTRRPRGFAYVQFEDVRD R Y G T R R 0 1 0 2 0 0 0 1 0 1 1 0 0 1 2 0 1 0 3 3 0 0 16 0 1915.972 O75494 O75494 33 48 SRSF10 Serine/arginine-rich splicing factor 10 yes yes 2 9.4004E-05 105.17 By MS/MS By MS/MS 4.33 1.25 1 1 1 1 2 19000000 0 6314600 12686000 15653 267 16406 68402;68403;68404 57673;57674 57673 2 0 2185900 2282300 YGPLLDLPELPFPELER GSCPNFAVVCSFLERYGPLLDLPELPFPEL PLLDLPELPFPELERVLQAPPPDVGNGEVP R Y G E R V 0 1 0 1 0 0 3 1 0 0 5 0 0 1 4 0 0 0 1 0 0 0 17 0 1997.051 Q96T23 Q96T23 33 49 RSF1 Remodeling and spacing factor 1 yes yes 2;3 4.6568E-09 166.7 By matching By MS/MS 2.2 1.17 2 1 1 1 1 4 31828000 0 402870 31425000 15654 1837 16407 68405;68406;68407;68408;68409 57675;57676;57677;57678 57675 4 0 181420 6286500 YGPLSGVNVVYDQR SLYTTERDLREVFSRYGPLSGVNVVYDQRT RYGPLSGVNVVYDQRTGRSRGFAFVYFERI R Y G Q R T 0 1 1 1 0 1 0 2 0 0 1 0 0 0 1 1 0 0 2 3 0 0 14 0 1565.7838 Q13595 Q13595 142 155 TRA2A Transformer-2 protein homolog alpha yes yes 2;3 2.8525E-17 190.26 By MS/MS By MS/MS By MS/MS 5.27 1.42 1 1 2 6 1 1 4 6 294820000 7351600 127060000 160400000 15655 1260 16408 68410;68411;68412;68413;68414;68415;68416;68417;68418;68419;68420 57679;57680;57681;57682;57683;57684;57685;57686;57687 57682 9 9788700 42464000 23957000 YGPPPSYPNLK NAHKVPPPWLIAMQRYGPPPSYPNLKIPGL AMQRYGPPPSYPNLKIPGLNSPIPESCSFG R Y G L K I 0 0 1 0 0 0 0 1 0 0 1 1 0 0 4 1 0 0 2 0 0 0 11 0 1231.6237 Q13435 Q13435 639 649 SF3B2 Splicing factor 3B subunit 2 yes yes 2 0.019997 84.213 By MS/MS By matching 2.67 0.471 1 2 2 1 15417000 0 11273000 4144000 15656 1248 16409 68421;68422;68423 57688;57689;57690 57689 3 0 4998500 803730 YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK RMGPPVGGHRRGPSRYGPQYGHPPPPPPPP ADSPVLMVYGLDQSKMNCDRVFNVFCLYGN R Y G S K M 1 0 0 2 0 2 1 4 2 0 2 1 1 0 11 2 0 0 4 2 0 0 35 0 3783.8032 P14866 P14866 359 393 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 3;4 6.7053E-64 148.6 By MS/MS By MS/MS 3.73 1.69 2 1 4 4 1 2 1 8 7 888920000 0 385930000 503000000 15657 565 16410;16411 68424;68425;68426;68427;68428;68429;68430;68431;68432;68433;68434;68435;68436;68437;68438 57691;57692;57693;57694;57695;57696;57697;57698;57699;57700;57701;57702;57703;57704;57705 57695 252 15 0 135260000 91427000 YGQFSGLNPGGR CSFQILKPADKNKGKYGQFSGLNPGGRPIT KGKYGQFSGLNPGGRPITPPRNSAKAKK__ K Y G G R P 0 1 1 0 0 1 0 4 0 0 1 0 0 1 1 1 0 0 1 0 0 0 12 0 1251.5996 P62136 P62136 306 317 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2 0.0012061 115.86 By matching By MS/MS 6 0 2 1 1 17751000 0 2510900 15240000 15658 1006 16412 68439;68440 57706 57706 1 0 869200 2280100 YGQFSGLNPGGRPITPPR CSFQILKPADKNKGKYGQFSGLNPGGRPIT FSGLNPGGRPITPPRNSAKAKK________ K Y G P R N 0 2 1 0 0 1 0 4 0 1 1 0 0 1 4 1 1 0 1 0 0 0 18 1 1912.9908 P62136 P62136 306 323 PPP1CA Serine/threonine-protein phosphatase PP1-alpha catalytic subunit yes yes 2;3 3.7307E-09 125.52 By MS/MS By MS/MS 6 0 3 1 2 55370000 0 17577000 37794000 15659 1006 16413 68441;68442;68443 57707;57708;57709;57710 57707 4 0 6084400 5654400 YGQHPPDAVDEPQMLTNEK KCIQCGQYLDDPDLKYGQHPPDAVDEPQML PPDAVDEPQMLTNEKLSIFDANESGFESYE K Y G E K L 1 0 1 2 0 2 2 1 1 0 1 1 1 0 3 0 1 0 1 1 0 0 19 0 2167.9844 P26358 P26358 367 385 DNMT1 DNA (cytosine-5)-methyltransferase 1 yes yes 3 0.00010388 85.496 By MS/MS 1 0 1 1 15060000 0 0 15060000 15660 667 16414 68444 57711 57711 1 0 0 3245000 YGQISEVVVVK SFDTNEQSLEQVFSKYGQISEVVVVKDRET VFSKYGQISEVVVVKDRETQRSRGFGFVTF K Y G V K D 0 0 0 0 0 1 1 1 0 1 0 1 0 0 0 1 0 0 1 4 0 0 11 0 1219.6812 Q14011 Q14011 29 39 CIRBP Cold-inducible RNA-binding protein yes yes 2 0.049264 73.985 By matching By MS/MS 7 0 2 1 1 55288000 0 19743000 35544000 15661 1280 16415 68445;68446 57712 57712 1 0 11337000 6307100 YGRDDIDNIAR WTKRDFNQFIKANEKYGRDDIDNIAREVEG ANEKYGRDDIDNIAREVEGKSPEEVMEYSA K Y G A R E 1 2 1 3 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 11 1 1306.6266 P28370 P28370 875 885 SMARCA1 Probable global transcription activator SNF2L1 yes yes 3 0.044988 53.388 By matching By MS/MS 1.5 0.5 1 1 1 1 12355000 0 775810 11579000 15662 693 16416 68447;68448 57713 57713 1 0 379210 2616600 YGSALASAGDPGHPNHPLHASQNSAR NWMVSIMDSTEAQLRYGSALASAGDPGHPN GHPNHPLHASQNSARRERMTAREEASLRTL R Y G A R R 5 1 2 1 0 1 0 3 3 0 2 0 0 0 3 4 0 0 1 0 0 0 26 0 2611.2276 O95071 O95071 1855 1880 UBR5 E3 ubiquitin-protein ligase UBR5 yes yes 4;5 1.6005E-16 100.62 By matching By MS/MS 1.25 0.433 3 1 1 3 13296000 0 824410 12472000 15663 308 16417 68449;68450;68451;68452 57714;57715;57716 57715 3 0 402960 2701900 YGSDIVPFSK DETEVLKEDIIQGFRYGSDIVPFSKVDEEQ IQGFRYGSDIVPFSKVDEEQMKYKSEGKCF R Y G S K V 0 0 0 1 0 0 0 1 0 1 0 1 0 1 1 2 0 0 1 1 0 0 10 0 1111.555 P13010 P13010 316 325 XRCC5 X-ray repair cross-complementing protein 5 yes yes 2 0.00090154 112.11 By matching By MS/MS By MS/MS 3.75 2.82 1 3 2 1 1 3 3 2 143130000 5906900 59099000 78127000 15664 542 16418 68453;68454;68455;68456;68457;68458;68459;68460 57717;57718;57719;57720;57721 57719 5 5713200 29084000 15420000 YGSGGGSKGGSISGGGYGSGGGK ISGGGYGSGGGSGGRYGSGGGSKGGSISGG GGSISGGGYGSGGGKHSSGGGSRGGSSSGG R Y G G K H 0 0 0 0 0 0 0 13 0 1 0 2 0 0 0 5 0 0 2 0 0 0 23 1 1889.8504 CON__P35908;CON__P35908v2;P35908 CON__P35908 579 601 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2;3 2.047E-21 152.88 By MS/MS 4.83 3.02 2 2 1 1 1 1 1 1 1 1 12 122870000 122870000 0 0 + 15665 65;66 16419 68461;68462;68463;68464;68465;68466;68467;68468;68469;68470;68471;68472 57722;57723;57724;57725;57726;57727;57728;57729;57730;57731;57732;57733;57734 57726 13 145750000 0 0 YGSGSGQQSVTGVTSVDDSNSYWR LNTRHNVRLHSHDVRYGSGSGQQSVTGVTS VTGVTSVDDSNSYWRIRGKSATVCERGTPI R Y G W R I 0 1 1 2 0 2 0 4 0 0 0 0 0 0 0 6 2 1 2 3 0 0 24 0 2536.1102 Q99470 Q99470 48 71 SDF2 Stromal cell-derived factor 2 yes yes 3 9.1693E-13 109.23 By MS/MS 7 0 1 1 4757600 0 0 4757600 15666 1844 16420 68473 57735 57735 1 0 0 844200 YGTCPHGGYGLGLER GIDPTPYYWYTDQRKYGTCPHGGYGLGLER YGTCPHGGYGLGLERFLTWILNRYHIRDVC K Y G E R F 0 1 0 0 1 0 1 5 1 0 2 0 0 0 1 0 1 0 2 0 0 0 15 0 1635.7464 O43776 O43776 508 522 NARS Asparagine--tRNA ligase, cytoplasmic yes yes 3 0.0047471 66.387 By MS/MS By MS/MS 3.5 0.5 1 1 1 1 12076000 0 4002100 8073400 15667 211 16421 68474;68475 57736;57737 57736 2 0 1328200 1565900 YGVFPLR KTLAVSGLGVVGRDKYGVFPLRGKILNVRE LGVVGRDKYGVFPLRGKILNVREASHKQIM K Y G L R G 0 1 0 0 0 0 0 1 0 0 1 0 0 1 1 0 0 0 1 1 0 0 7 0 850.47012 P11388;Q02880 P11388 481 487 TOP2A;TOP2B DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta no no 2 0.013315 114.67 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 36454000 0 8054800 28399000 15668 524;1150 16422 68476;68477;68478;68479;68480 57738;57739;57740;57741;57742 57738 5 0 3810200 6129100 YGVIIVGNPK LNDPRRLNVALTRARYGVIIVGNPKALSKQ LTRARYGVIIVGNPKALSKQPLWNHLLNYY R Y G P K A 0 0 1 0 0 0 0 2 0 2 0 1 0 0 1 0 0 0 1 2 0 0 10 0 1058.6124 Q92900 Q92900 879 888 UPF1 Regulator of nonsense transcripts 1 yes yes 2 0.0028066 104.37 By MS/MS 2 0 1 1 2517900 0 2517900 0 15669 1729 16423 68481 57743 57743 1 0 1133800 0 YGVNPGPIVGTTR VTELTNEDLLDQLVKYGVNPGPIVGTTRKL VKYGVNPGPIVGTTRKLYEKKLLKLREQGT K Y G T R K 0 1 1 0 0 0 0 3 0 1 0 0 0 0 2 0 2 0 1 2 0 0 13 0 1329.7041 P42166;P42167 P42166 127 139 TMPO Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin no no 2 0.00026528 132.25 By matching By MS/MS By MS/MS 4.2 0.98 1 3 1 1 2 2 261400000 5895600 38222000 217280000 15670 798;799 16424 68482;68483;68484;68485;68486 57744;57745;57746;57747 57747 4 4599600 12771000 37237000 YHAASAEEQATIER MIQTLEAVKRKQFEKYHAASAEEQATIERN KYHAASAEEQATIERNPYTIFHQALKNCEP K Y H E R N 4 1 0 0 0 1 3 0 1 1 0 0 0 0 0 1 1 0 1 0 0 0 14 0 1574.7325 Q9Y2R9 Q9Y2R9 126 139 MRPS7 28S ribosomal protein S7, mitochondrial yes yes 2;3 0.0013951 107.11 By MS/MS 6.67 0.471 1 2 3 27276000 0 0 27276000 15671 2248 16425 68487;68488;68489 57748;57749 57748 2 0 0 4744700 YHALLIPSCPGALTDLASSGSLAR AYASPAKLESIDGARYHALLIPSCPGALTD PGALTDLASSGSLARILQHFHSESKPICAV R Y H A R I 4 1 0 1 1 0 0 2 1 1 5 0 0 0 2 4 1 0 1 0 0 0 24 0 2469.2686 Q8NB37 Q8NB37 86 109 PDDC1 Parkinson disease 7 domain-containing protein 1 yes yes 3 0.00023315 61.222 By matching By MS/MS 7 0.816 1 1 1 1 2 26677000 0 822470 25854000 15672 1623 16426 68490;68491;68492 57750 57750 1 0 284710 4081600 YHDMPDVIDFLVLR DPDTGKLTGGSFTMKYHDMPDVIDFLVLRQ KYHDMPDVIDFLVLRQQFDDAKYRRWNIGD K Y H L R Q 0 1 0 3 0 0 0 0 1 1 2 0 1 1 1 0 0 0 1 2 0 0 14 0 1731.8654 Q8WWQ0;Q9NSI6 Q8WWQ0 1042 1055 PHIP;BRWD1 PH-interacting protein;Bromodomain and WD repeat-containing protein 1 yes no 2;3 0.00031909 116.77 By MS/MS 1.33 0.471 2 1 3 17580000 0 0 17580000 15673 1690 16427 68493;68494;68495 57751;57752;57753 57753 3 0 0 3800600 YHEQLSTQSLIELFESFK NIRQNLQICVQVASKYHEQLSTQSLIELFE QLSTQSLIELFESFKSFEGLFYFLGSIVNF K Y H F K S 0 0 0 0 0 2 3 0 1 1 3 1 0 2 0 3 1 0 1 0 0 0 18 0 2198.0895 Q00610 Q00610 689 706 CLTC Clathrin heavy chain 1 yes yes 3 3.2141E-09 146.76 By MS/MS 2.5 1.12 1 1 1 1 4 31857000 0 0 31857000 15674 1125 16428 68496;68497;68498;68499 57754;57755 57755 2 0 0 6953100 YHFFLYK ELKDLPKRIPKDSARYHFFLYKHSHEGDYL RIPKDSARYHFFLYKHSHEGDYLESIVFIY R Y H Y K H 0 0 0 0 0 0 0 0 1 0 1 1 0 2 0 0 0 0 2 0 0 0 7 0 1016.512 Q12792;Q6IBS0 Q12792 236 242 TWF1;TWF2 Twinfilin-1;Twinfilin-2 no no 2 0.038272 85.061 By MS/MS By MS/MS 5.5 0.5 2 2 2 2 15513000 0 8729500 6783100 15675 1199;1477 16429 68500;68501;68502;68503 57756;57757 57757 2 0 2884900 982130 YHFLILLFSK FVISLDPPIKQGQTRYHFLILLFSKDEDIS QGQTRYHFLILLFSKDEDISLTLNMNEEEV R Y H S K D 0 0 0 0 0 0 0 0 1 1 3 1 0 2 0 1 0 0 1 0 0 0 10 0 1279.7329 Q08945 Q08945 270 279 SSRP1 FACT complex subunit SSRP1 yes yes 2 0.067159 68.371 By MS/MS 3.5 0.5 1 1 2 4656700 0 0 4656700 15676 1186 16430 68504;68505 57758 57758 1 0 0 863250 YHIEVNR SQICTVGRLWISVARYHIEVNRVPAGNWVL RLWISVARYHIEVNRVPAGNWVLIEGVDQP R Y H N R V 0 1 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 1 1 0 0 7 0 929.47191 Q15029 Q15029 537 543 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 2 0.0027364 137.83 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 15240000 1875900 5836900 7526800 15677 1335 16431 68506;68507;68508;68509 57759;57760 57760 2 2260200 2628400 1643900 YHNVGLSK TFKEEEPVKKIMEKKYHNVGLSKCEIKVAM KKIMEKKYHNVGLSKCEIKVAMSKEQYQQQ K Y H S K C 0 0 1 0 0 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 0 0 8 0 916.47667 Q14103 Q14103 244 251 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 yes yes 2 0.0015331 114.5 By MS/MS 5.5 1.12 1 1 1 1 4 9114600 0 9114600 0 15678 1281 16432 68510;68511;68512;68513 57761;57762 57761 2 0 2872400 0 YHPDKNPNEGEK TQEELKKAYRKLALKYHPDKNPNEGEKFKQ ALKYHPDKNPNEGEKFKQISQAYEVLSDAK K Y H E K F 0 0 2 1 0 0 2 1 1 0 0 2 0 0 2 0 0 0 1 0 0 0 12 1 1426.6477 P31689 P31689 33 44 DNAJA1 DnaJ homolog subfamily A member 1 yes yes 3 0.059876 46.378 By MS/MS 4.5 0.5 1 1 2 1274300 0 1274300 0 15679 720 16433 68514;68515 57763 57763 1 0 346930 0 YHPFLYDR KAHVEGDGVVEGIIRYHPFLYDRETYPDDP VVEGIIRYHPFLYDRETYPDDPCFPSKLKD R Y H D R E 0 1 0 1 0 0 0 0 1 0 1 0 0 1 1 0 0 0 2 0 0 0 8 0 1109.5294 A6NHR9 A6NHR9 429 436 SMCHD1 Structural maintenance of chromosomes flexible hinge domain-containing protein 1 yes yes 2 0.053315 72.138 By MS/MS By MS/MS 1 0 2 1 1 29222000 0 4385800 24836000 15680 15 16434 68516;68517 57764;57765 57764 2 0 2143700 5351400 YHSDFNR DAYWPEAKRAALDERYHSDFNRQDRFHDFD KRAALDERYHSDFNRQDRFHDFDHRDRGRY R Y H N R Q 0 1 1 1 0 0 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 7 0 937.40423 Q15424 Q15424 736 742 SAFB Scaffold attachment factor B1 yes yes 2 0.071154 72.234 By MS/MS 2 0 1 1 874230 0 874230 0 15681 1364 16435 68518 57766 57766 1 0 393680 0 YHSDFNRQDR DAYWPEAKRAALDERYHSDFNRQDRFHDFD ALDERYHSDFNRQDRFHDFDHRDRGRYPDH R Y H D R F 0 2 1 2 0 1 0 0 1 0 0 0 0 1 0 1 0 0 1 0 0 0 10 1 1336.5909 Q15424 Q15424 736 745 SAFB Scaffold attachment factor B1 yes yes 3 0.042927 59.067 By MS/MS 2 0 1 1 0 0 0 0 15682 1364 16436 68519 57767 57767 1 0 0 0 YHTINGHNAEVR TFDDHDPVDKIVLQKYHTINGHNAEVRKAL LQKYHTINGHNAEVRKALSRQEMQEVQSSR K Y H V R K 1 1 2 0 0 0 1 1 2 1 0 0 0 0 0 0 1 0 1 1 0 0 12 0 1409.68 P22626 P22626 174 185 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 2;3 3.8407E-12 180.07 By MS/MS By MS/MS 4.85 1.9 2 1 2 2 3 6 4 9 11 672170000 0 340230000 331940000 15683 632 16437 68520;68521;68522;68523;68524;68525;68526;68527;68528;68529;68530;68531;68532;68533;68534;68535;68536;68537;68538;68539 57768;57769;57770;57771;57772;57773;57774;57775;57776;57777;57778;57779;57780;57781;57782;57783;57784;57785;57786;57787;57788 57785 21 0 121720000 49706000 YHTINGHNAEVRK TFDDHDPVDKIVLQKYHTINGHNAEVRKAL QKYHTINGHNAEVRKALSRQEMQEVQSSRS K Y H R K A 1 1 2 0 0 0 1 1 2 1 0 1 0 0 0 0 1 0 1 1 0 0 13 1 1537.775 P22626 P22626 174 186 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 yes yes 3 0.0014893 90.412 By MS/MS 5.6 1.02 1 1 2 1 5 37178000 0 37178000 0 15684 632 16438 68540;68541;68542;68543;68544 57789;57790 57790 2 0 13344000 0 YHTMQAAVDAVAR LLSQFREYLDYDDTRYHTMQAAVDAVARVT TRYHTMQAAVDAVARVTGQHPEVPPAFWNN R Y H A R V 4 1 0 1 0 1 0 0 1 0 0 0 1 0 0 0 1 0 1 2 0 0 13 0 1431.6929 Q9BVI4 Q9BVI4 182 194 NOC4L Nucleolar complex protein 4 homolog yes yes 2 0.00038456 125.74 By MS/MS 4 0 1 1 19098000 0 0 19098000 15685 1914 16439 68545 57791 57791 1 0 0 3119400 YHTSQSGDEMTSLSEYVSR HEDSTNRRRLSELLRYHTSQSGDEMTSLSE QSGDEMTSLSEYVSRMKETQKSIYYITGES R Y H S R M 0 1 0 1 0 1 2 1 1 0 1 0 1 0 0 5 2 0 2 1 0 0 19 0 2175.9379 P08238 P08238 457 475 HSP90AB1 Heat shock protein HSP 90-beta yes yes 2;3 1.8345E-52 226.19 By MS/MS By MS/MS 3 0 3 1 2 25244000 8542800 0 16702000 15686 469 16440 68546;68547;68548 57792;57793 57793 2 9856400 0 3239300 YHTVNGHNCEVR TFDDHDSVDKIVIQKYHTVNGHNCEVRKAL IQKYHTVNGHNCEVRKALSKQEMASASSSQ K Y H V R K 0 1 2 0 1 0 1 1 2 0 0 0 0 0 0 0 1 0 1 2 0 0 12 0 1484.6579 P09651 P09651 167 178 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed yes yes 3 0.010581 71.085 By matching By MS/MS 6.33 0.471 2 1 1 2 7698600 0 2517700 5180800 15687 490 16441 68549;68550;68551 57794 57794 1 0 871540 790510 YHVLVNLGK RKEIDLLLGQTDDTRYHVLVNLGKKITDYG QTDDTRYHVLVNLGKKITDYGGDKEIQNMD R Y H G K K 0 0 1 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 1 2 0 0 9 0 1041.5971 O75643 O75643 169 177 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 3.01E-07 157.99 By matching By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 95256000 3881600 28642000 62733000 15688 277 16442 68552;68553;68554;68555 57795;57796;57797 57795 3 3881600 14000000 13548000 YHVMANHNSLPILK CHHCGKQLRSLAGMKYHVMANHNSLPILKA KYHVMANHNSLPILKAGDEIDEPSERERLR K Y H L K A 1 0 2 0 0 0 0 0 2 1 2 1 1 0 1 1 0 0 1 1 0 0 14 0 1635.8555 Q96ME7 Q96ME7 214 227 ZNF512 Zinc finger protein 512 yes yes 3 0.0093831 64.224 By matching By MS/MS 3.33 0.471 2 1 1 2 24160000 0 3244200 20916000 15689 1809 16443 68556;68557;68558 57798;57799 57799 2 0 1383000 3683800 YHVVSGADDYTVK GHTKAVHTVDFTADKYHVVSGADDYTVKLW DKYHVVSGADDYTVKLWDIPNSKEILTFKE K Y H V K L 1 0 0 2 0 0 0 1 1 0 0 1 0 0 0 1 1 0 2 3 0 0 13 0 1452.6885 Q8TED0 Q8TED0 135 147 UTP15 U3 small nucleolar RNA-associated protein 15 homolog yes yes 2 0.00030257 136.96 By MS/MS 4 0 1 1 8828400 0 0 8828400 15690 1665 16444 68559 57800 57800 1 0 0 1442000 YHYELLNYIDLPVLAIHGK KKKLMVFFSSCMSVKYHYELLNYIDLPVLA LLNYIDLPVLAIHGKQKQNKRTTTFFQFCN K Y H G K Q 1 0 1 1 0 0 1 1 2 2 4 1 0 0 1 0 0 0 3 1 0 0 19 0 2270.2099 Q9NVP1 Q9NVP1 440 458 DDX18 ATP-dependent RNA helicase DDX18 yes yes 3;4 2.0532E-09 117.67 By MS/MS By MS/MS 2.89 1.2 1 3 2 2 1 1 8 52583000 0 1138700 51444000 15691 2069 16445 68560;68561;68562;68563;68564;68565;68566;68567;68568 57801;57802;57803;57804 57803 3 0 512790 9959500 YIAENGTDPINNQPLSEEQLIDIK SPVSNHVYERRLIEKYIAENGTDPINNQPL INNQPLSEEQLIDIKVAHPIRPKPPSATSI K Y I I K V 1 0 3 2 0 2 3 1 0 4 2 1 0 0 2 1 1 0 1 0 0 0 24 0 2713.3447 Q9UMS4 Q9UMS4 33 56 PRPF19 Pre-mRNA-processing factor 19 yes yes 2;3 8.0613E-22 157.42 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 53524000 0 4655400 48869000 15692 2199 16446 68569;68570;68571;68572 57805;57806;57807 57807 3 0 1544900 8111100 YIAEPSMHSMPAVTLSPNGK KSLRVWEWDIPVDFKYIAEPSMHSMPAVTL SMHSMPAVTLSPNGKWLACQSMDNQILIFG K Y I G K W 2 0 1 0 0 0 1 1 1 1 1 1 2 0 3 3 1 0 1 1 0 0 20 0 2129.0285 O60508 O60508 455 474 CDC40 Pre-mRNA-processing factor 17 yes yes 3 0.00051861 66.325 By MS/MS By matching 3.5 0.5 1 1 1 1 6860300 0 3480800 3379500 15693 228 16447 68573;68574 57808 57808 1 0 1483900 551990 YIASVQGSTPSPR ______________________________ ERYIASVQGSTPSPRQKSMKGFYFAKLYYE R Y I P R Q 1 1 0 0 0 1 0 1 0 1 0 0 0 0 2 3 1 0 1 1 0 0 13 0 1361.6939 P49792 P49792 11 23 RANBP2 E3 SUMO-protein ligase RanBP2 yes yes 2 1.6096E-07 170.47 By MS/MS By MS/MS 3.5 3.77 2 1 1 1 3 35028000 0 5516500 29511000 15694 871 16448 68575;68576;68577;68578 57809;57810;57811;57812 57811 3 0 2696400 11123000 YICDNQDTISSK GDLLECADDRADLAKYICDNQDTISSKLKE LAKYICDNQDTISSKLKECCDKPLLEKSHC K Y I S K L 0 0 1 2 1 1 0 0 0 2 0 1 0 0 0 2 1 0 1 0 0 0 12 0 1442.6348 CON__P02769 CON__P02769 286 297 yes yes 2 1.8958E-12 182.71 By MS/MS By MS/MS By MS/MS 5.5 2.82 1 1 2 2 2 1 1 1 1 2 9 2 3 924120000 896130000 6011800 21981000 + 15695 45 16449 68579;68580;68581;68582;68583;68584;68585;68586;68587;68588;68589;68590;68591;68592 57813;57814;57815;57816;57817;57818;57819;57820;57821;57822;57823 57817 11 575080000 15141000 7136600 YICENQDSISSK GDLLECADDRADLAKYICENQDSISSKLKE LAKYICENQDSISSKLKECCEKPLLEKSHC K Y I S K L 0 0 1 1 1 1 1 0 0 2 0 1 0 0 0 3 0 0 1 0 0 0 12 0 1442.6348 CON__P02768-1;P02768 CON__P02768-1 287 298 ALB Serum albumin yes no 2 1.105E-13 185.14 By MS/MS 5.91 3 1 1 1 1 1 1 1 3 1 11 816630000 816630000 0 0 + 15696 44 16450 68593;68594;68595;68596;68597;68598;68599;68600;68601;68602;68603 57824;57825;57826;57827;57828;57829;57830 57825 7 500840000 0 0 YIDQEELNK SGKDKKKKTKKIKEKYIDQEELNKTKPIWT KKIKEKYIDQEELNKTKPIWTRNPDDITQE K Y I N K T 0 0 1 1 0 1 2 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0 9 0 1150.5506 P07900;Q14568;P08238;Q58FF8 P08238 276 284 HSP90AA1;HSP90AA2P;HSP90AB1;HSP90AB2P Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 no no 2 0.00051599 125.31 By MS/MS By MS/MS 3.67 0.943 2 1 1 2 68545000 16706000 0 51839000 15697 466;469;1431 16451 68604;68605;68606 57831;57832;57833 57832 3 19275000 0 9683200 YIEGLSAESNSISK PPKTQRLLHSEAYLKYIEGLSAESNSISKW KYIEGLSAESNSISKWDQTLAARRRDVHLS K Y I S K W 1 0 1 0 0 0 2 1 0 2 1 1 0 0 0 4 0 0 1 0 0 0 14 0 1496.7359 Q86U86 Q86U86 1613 1626 PBRM1 Protein polybromo-1 yes yes 2 0.00041681 124.39 By MS/MS By MS/MS 1.75 0.829 2 1 1 1 3 28556000 0 5567700 22988000 15698 1545 16452 68607;68608;68609;68610 57834;57835 57835 2 0 2721400 4897700 YIEIFPSR ANQALLKHREEIGNRYIEIFPSRRNEVRTH REEIGNRYIEIFPSRRNEVRTHVGSYKGKK R Y I S R R 0 1 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 8 0 1023.5389 Q12849 Q12849 318 325 GRSF1 G-rich sequence factor 1 yes yes 2 0.0015256 114.6 By MS/MS By MS/MS 4.5 0.5 2 2 2 2 21438000 0 9174400 12263000 15699 1204 16453 68611;68612;68613;68614 57836;57837;57838 57837 3 0 2526600 1835500 YIEIFPSRR ANQALLKHREEIGNRYIEIFPSRRNEVRTH EEIGNRYIEIFPSRRNEVRTHVGSYKGKKI R Y I R R N 0 2 0 0 0 0 1 0 0 2 0 0 0 1 1 1 0 0 1 0 0 0 9 1 1179.64 Q12849 Q12849 318 326 GRSF1 G-rich sequence factor 1 yes yes 2 0.032382 83.206 By MS/MS 5 0 1 1 3495100 0 3495100 0 15700 1204 16454 68615 57839 57839 1 0 900940 0 YIEIYVQK VHDLVLYLYRNNLQKYIEIYVQKVNPSRLP YRNNLQKYIEIYVQKVNPSRLPVVIGGLLD K Y I Q K V 0 0 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 2 1 0 0 8 0 1054.5699 Q00610;P53675 Q00610 799 806 CLTC;CLTCL1 Clathrin heavy chain 1;Clathrin heavy chain 2 yes no 2 0.00029531 132.29 By MS/MS By MS/MS 3.6 3.26 1 2 1 1 1 4 96306000 0 13068000 83238000 15701 1125 16455 68616;68617;68618;68619;68620 57840;57841;57842;57843 57842 4 0 5884700 18087000 YIELFLNSTPGGGSGMGGSGMGGYGR AVAAMSKDKNNMQHRYIELFLNSTPGGGSG GGSGMGGSGMGGYGRDGMDNQGGYGSVGRM R Y I G R D 0 1 1 0 0 0 1 10 0 1 2 0 2 1 1 3 1 0 2 0 0 0 26 0 2521.1366 P31942 P31942 262 287 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 yes yes 2;3 4.2313E-102 239.86 By MS/MS By MS/MS By MS/MS 6.08 0.266 12 1 1 6 6 222800000 2716500 118240000 101840000 15702 721 16456;16457;16458 68621;68622;68623;68624;68625;68626;68627;68628;68629;68630;68631;68632;68633 57844;57845;57846;57847;57848;57849;57850;57851;57852;57853;57854 57853 323;324 11 3617000 40931000 15276000 YIELLTR PSGVILQEAADVHARYIELLTRSGDYYRFL EAADVHARYIELLTRSGDYYRFLSEMLKSL R Y I T R S 0 1 0 0 0 0 1 0 0 1 2 0 0 0 0 0 1 0 1 0 0 0 7 0 906.51747 P15924 P15924 1003 1009 DSP Desmoplakin yes yes 2 0.017273 107.43 By MS/MS By MS/MS By MS/MS 5.29 3.22 3 1 1 1 1 1 2 1 1 2 7 1 6 165170000 88324000 18733000 58115000 15703 572 16459 68634;68635;68636;68637;68638;68639;68640;68641;68642;68643;68644;68645;68646;68647 57855;57856;57857;57858;57859;57860;57861 57856 7 86663000 9156500 18051000 YIETDPANR SQEEEKTEALTSAKRYIETDPANRDRRTPI LTSAKRYIETDPANRDRRTPITVVKQGFEP R Y I N R D 1 1 1 1 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 9 0 1077.5091 P06396 P06396 730 738 GSN Gelsolin no no 2 0.058001 69.198 By MS/MS By matching 3.5 0.5 1 1 1 1 2310300 0 1502500 807780 + 15704 440 16460 68648;68649 57862 57862 1 0 640540 131940 YIETTPLTIK YLEMEFKEAITAIMKYIETTPLTIKGKSVK TAIMKYIETTPLTIKGKSVKICVPGKKKAQ K Y I I K G 0 0 0 0 0 0 1 0 0 2 1 1 0 0 1 0 3 0 1 0 0 0 10 0 1177.6594 Q14966 Q14966 731 740 ZNF638 Zinc finger protein 638 yes yes 2 0.021831 81.972 By MS/MS 1 0 1 1 4625500 0 4625500 0 15705 1324 16461 68650 57863 57863 1 0 2260900 0 YIFDNVAK TTEELKTWIKRVQKRYIFDNVAKVWKDYDR IKRVQKRYIFDNVAKVWKDYDRDKDDKISW R Y I A K V 1 0 1 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 1 0 0 8 0 968.49673 Q15293 Q15293 115 122 RCN1 Reticulocalbin-1 yes yes 2 0.056718 71.296 By MS/MS 5 0 1 1 41341000 0 0 41341000 15706 1354 16462 68651 57864 57864 1 0 0 5766300 YIFHSFIER MSHVAEQEEMFRSPKYIFHSFIERLWAYLT MFRSPKYIFHSFIERLWAYLTIQQLLEQMV K Y I E R L 0 1 0 0 0 0 1 0 1 2 0 0 0 2 0 1 0 0 1 0 0 0 9 0 1210.6135 CON__Q3T052 CON__Q3T052 539 547 yes yes 3 0.0013194 93.111 By MS/MS By matching 3 0 2 1 1 5397700 4188500 0 1209200 + 15707 85 16463 68652;68653 57865 57865 1 4832600 0 234540 YIFPTLDKPSVVSLQNLIVR LMTDVLVFLQEKDQKYIFPTLDKPSVVSLQ LDKPSVVSLQNLIVRDIANQEKGMFLISAA K Y I V R D 0 1 1 1 0 1 0 0 0 2 3 1 0 1 2 2 1 0 1 3 0 0 20 1 2301.3097 Q92974 Q92974 510 529 ARHGEF2 Rho guanine nucleotide exchange factor 2 yes yes 3 6.2623E-14 125.18 By MS/MS 2 0 1 1 3383200 0 3383200 0 15708 1735 16464 68654 57866 57866 1 0 1523500 0 YIFTMLSSLAR FGTRLHGGKDSASPRYIFTMLSSLARLLFP ASPRYIFTMLSSLARLLFPPKDDHTLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 2 1 0 1 0 0 0 11 0 1300.6849 P11388 P11388 805 815 TOP2A DNA topoisomerase 2-alpha yes yes 2 1.6273E-35 206.78 By MS/MS By MS/MS 1.67 0.745 3 2 1 2 4 180820000 0 32404000 148420000 15709 524 16465;16466 68655;68656;68657;68658;68659;68660 57867;57868;57869;57870;57871;57872;57873 57870 229 7 0 14888000 32264000 YIFTMLSTLAR FGTRLHGGKDAASPRYIFTMLSTLARLLFP ASPRYIFTMLSTLARLLFPAVDDNLLKFLY R Y I A R L 1 1 0 0 0 0 0 0 0 1 2 0 1 1 0 1 2 0 1 0 0 0 11 0 1314.7006 Q02880 Q02880 826 836 TOP2B DNA topoisomerase 2-beta yes yes 2 4.0498E-08 163.32 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 48782000 0 10189000 38593000 15710 1150 16467 68661;68662;68663;68664;68665 57874;57875;57876;57877 57875 4 0 4720300 8388900 YIGEVGDIVVGR ERVNKLICVKALKTRYIGEVGDIVVGRITE KTRYIGEVGDIVVGRITEVQQKRWKVETNS R Y I G R I 0 1 0 1 0 0 1 3 0 2 0 0 0 0 0 0 0 0 1 3 0 0 12 0 1275.6823 Q13868 Q13868 76 87 EXOSC2 Exosome complex component RRP4 yes yes 2 0.00067418 122.26 By MS/MS By MS/MS 6 0 2 1 1 17382000 0 3650200 13731000 15711 1273 16468 68666;68667 57878;57879 57878 2 0 1263600 2054400 YIHLENLLAR QTDPMIMLKQTQPERYIHLENLLARSYFDP TQPERYIHLENLLARSYFDPREAYPDGSSK R Y I A R S 1 1 1 0 0 0 1 0 1 1 3 0 0 0 0 0 0 0 1 0 0 0 10 0 1240.6928 Q2TAY7 Q2TAY7 114 123 SMU1 WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed yes yes 3 1.1116E-07 156.83 By MS/MS By MS/MS 3.62 1.73 1 1 2 2 1 1 4 4 86951000 0 46008000 40943000 15712 1407 16469 68668;68669;68670;68671;68672;68673;68674;68675 57880;57881;57882;57883;57884;57885;57886 57882 7 0 14916000 7169000 YIHSANVLHR DHICYFLYQILRGLKYIHSANVLHRDLKPS LRGLKYIHSANVLHRDLKPSNLLLNTTCDL K Y I H R D 1 1 1 0 0 0 0 0 2 1 1 0 0 0 0 1 0 0 1 1 0 0 10 0 1208.6414 P28482;P27361;P31152;Q16659 P28482 139 148 MAPK1;MAPK3;MAPK4;MAPK6 Mitogen-activated protein kinase 1;Mitogen-activated protein kinase 3;Mitogen-activated protein kinase 4;Mitogen-activated protein kinase 6 yes no 3 0.016994 60.064 By MS/MS 6 0 1 1 0 0 0 0 15713 694 16470 68676 57887 57887 1 0 0 0 YILAATLDNTLK DNPPVSFVKFSPNGKYILAATLDNTLKLWD NGKYILAATLDNTLKLWDYSKGKCLKTYTG K Y I L K L 2 0 1 1 0 0 0 0 0 1 3 1 0 0 0 0 2 0 1 0 0 0 12 0 1334.7446 P61964 P61964 228 239 WDR5 WD repeat-containing protein 5 yes yes 2 1.521E-05 154.85 By MS/MS By MS/MS 5.8 0.748 2 2 1 2 3 57291000 0 18226000 39065000 15714 1001 16471 68677;68678;68679;68680;68681 57888;57889;57890;57891 57889 4 0 5954900 5635400 YILPDEPAIIVHPNWAAK RKRQEEIERQRRERRYILPDEPAIIVHPNW PDEPAIIVHPNWAAKSGKFDCSIMSLSVLL R Y I A K S 3 0 1 1 0 0 1 0 1 3 1 1 0 0 3 0 0 1 1 1 0 0 18 0 2046.0938 Q8IX12 Q8IX12 721 738 CCAR1 Cell division cycle and apoptosis regulator protein 1 yes yes 2;3 0.00075564 85.288 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 27206000 0 9304300 17902000 15715 1579 16472 68682;68683;68684;68685;68686;68687;68688 57892;57893;57894 57892 3 0 4228100 3651900 YILVTGGVISGIGK ______________________________ KYILVTGGVISGIGKGIIASSVGTILKSCG K Y I G K G 0 0 0 0 0 0 0 4 0 3 1 1 0 0 0 1 1 0 1 2 0 0 14 0 1375.8075 P17812;Q9NRF8 P17812 3 16 CTPS1;CTPS2 CTP synthase 1;CTP synthase 2 yes no 2 0.033669 67.153 By MS/MS 2.5 0.5 1 1 2 6336000 0 0 6336000 15716 587 16473 68689;68690 57895 57895 0 0 0 1314300 YIMLNPSSR TWLVSWTENIQGSIKYIMLNPSSRIKGEKD IQGSIKYIMLNPSSRIKGEKDWQKYETARR K Y I S R I 0 1 1 0 0 0 0 0 0 1 1 0 1 0 1 2 0 0 1 0 0 0 9 0 1079.5434 P11387 P11387 426 434 TOP1 DNA topoisomerase 1 yes yes 2 8.809E-05 143.89 By MS/MS By MS/MS 2.29 1.03 2 2 2 1 3 4 198650000 0 62212000 136440000 15717 523 16474 68691;68692;68693;68694;68695;68696;68697 57896;57897;57898;57899;57900 57899 5 0 27396000 28304000 YIMQYIAAITNPSQR VISGESGAGKTEASKYIMQYIAAITNPSQR YIMQYIAAITNPSQRAEVERVKNMLLKSNC K Y I Q R A 2 1 1 0 0 2 0 0 0 3 0 0 1 0 1 1 1 0 2 0 0 0 15 0 1767.8978 O94832 O94832 114 128 MYO1D Unconventional myosin-Id yes yes 3 0.00010058 107.74 By MS/MS By matching 2.5 0.5 1 1 1 1 3293200 0 2314400 978800 15718 299 16475 68698;68699 57901 57901 1 0 1042200 189840 YINENLIVNTDELGR SVISGYRLACKEAVRYINENLIVNTDELGR YINENLIVNTDELGRDCLINAAKTSMSSKI R Y I G R D 0 1 3 1 0 0 2 1 0 2 2 0 0 0 0 0 1 0 1 1 0 0 15 0 1761.8897 P17987 P17987 131 145 TCP1 T-complex protein 1 subunit alpha yes yes 2 0.00050296 143.22 By MS/MS 4 0 1 1 7523400 0 0 7523400 15719 591 16476 68700 57902 57902 1 0 0 1228800 YIPIQYVLSR RCEKDERFFSDKIAKYIPIQYVLSRYPSYG DKIAKYIPIQYVLSRYPSYGLNYYQQKPVA K Y I S R Y 0 1 0 0 0 1 0 0 0 2 1 0 0 0 1 1 0 0 2 1 0 0 10 0 1250.7023 CON__P02668 CON__P02668 25 34 yes yes 2 0.0010717 110.41 By MS/MS By MS/MS 5.81 2.98 2 1 1 2 1 2 1 2 2 2 9 7 247420000 195490000 0 51932000 + 15720 42 16477 68701;68702;68703;68704;68705;68706;68707;68708;68709;68710;68711;68712;68713;68714;68715;68716 57903;57904;57905;57906;57907;57908;57909;57910;57911;57912;57913;57914;57915 57908 13 209630000 0 25969000 YIPPHLR SSDNQSGGSTASKGRYIPPHLRNREATKGF GSTASKGRYIPPHLRNREATKGFYDKDSSG R Y I L R N 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 0 0 0 1 0 0 0 7 0 894.50757 O00571;O15523 O00571 38 44 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y yes no 2 0.040144 83.229 By MS/MS By MS/MS 3 0 2 1 1 21363000 0 8300700 13063000 15721 131 16478 68717;68718 57916;57917 57916 2 0 3538600 2533500 YIQDFQR LSKKYKELPEKKKMKYIQDFQREKQEFERN LPEKKKMKYIQDFQREKQEFERNLARFRED K Y I Q R E 0 1 0 1 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 7 0 968.47158 P17480 P17480 161 167 UBTF Nucleolar transcription factor 1 yes yes 2 0.0041753 129.16 By matching By MS/MS By MS/MS 2.25 0.433 3 1 1 1 2 146340000 60341000 32252000 53747000 15722 584 16479 68719;68720;68721;68722 57918;57919;57920 57918 3 72704000 14523000 10914000 YIQELWR ______________________________ ______________________________ K Y I W R K 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 7 0 1006.5236 P61313 P61313 6 12 RPL15 60S ribosomal protein L15 yes yes 2 0.0041753 129.16 By MS/MS By MS/MS 4.9 2.43 1 1 2 1 2 2 1 5 5 357460000 0 78294000 279160000 15723 991 16480 68723;68724;68725;68726;68727;68728;68729;68730;68731;68732 57921;57922;57923;57924;57925;57926;57927;57928;57929;57930 57926 9 0 41343000 49009000 YIQNLQGLFALPFGR EVTLSNPKGSQEGTKYIQNLQGLFALPFGR YIQNLQGLFALPFGRTAKPAHIAKVKMKFR K Y I G R T 1 1 1 0 0 2 0 2 0 1 3 0 0 2 1 0 0 0 1 0 0 0 15 0 1735.941 Q14669 Q14669 1669 1683 TRIP12 E3 ubiquitin-protein ligase TRIP12 yes yes 2 0.00030051 132.78 By matching By MS/MS 2 0.816 1 1 1 1 2 4742400 0 538820 4203600 15724 1308 16481 68733;68734;68735 57931;57932 57931 2 0 242640 880220 YIQPWESEFIDSQR GMSHEEDQLIPNLYRYIQPWESEFIDSQRV RYIQPWESEFIDSQRVWAEYALKRQEAIAQ R Y I Q R V 0 1 0 1 0 2 2 0 0 2 0 0 0 1 1 2 0 1 1 0 0 0 14 0 1796.837 Q6P2Q9 Q6P2Q9 1371 1384 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 2.0267E-05 162.38 By MS/MS By MS/MS 1.33 0.471 4 2 2 4 71558000 0 24649000 46909000 15725 1490 16482 68736;68737;68738;68739;68740;68741 57933;57934;57935;57936;57937 57933 5 0 12048000 10187000 YIQQTKPLTLER SQTGWPRGVTQFGNKYIQQTKPLTLERTIN GNKYIQQTKPLTLERTINLYPLTNYTFGTK K Y I E R T 0 1 0 0 0 2 1 0 0 1 2 1 0 0 1 0 2 0 1 0 0 0 12 1 1488.83 O43809 O43809 24 35 NUDT21 Cleavage and polyadenylation specificity factor subunit 5 yes yes 2;3 2.9697E-11 180.07 By MS/MS By MS/MS 6.8 0.4 1 4 2 3 303270000 0 131650000 171610000 15726 213 16483 68742;68743;68744;68745;68746 57938;57939;57940;57941;57942;57943;57944 57940 7 0 75596000 30214000 YISFEER CAGCTNPISGLGGTKYISFEERQWHNDCFN ISGLGGTKYISFEERQWHNDCFNCKKCSLS K Y I E R Q 0 1 0 0 0 0 2 0 0 1 0 0 0 1 0 1 0 0 1 0 0 0 7 0 942.4447 Q14192 Q14192 236 242 FHL2 Four and a half LIM domains protein 2 yes yes 2 0.0027937 138.48 By MS/MS 6 0 1 1 8531300 0 0 8531300 15727 1288 16484 68747 57945 57945 1 0 0 1276400 YISGSIHYSR DYSRDSFLKDGQPFRYISGSIHYSRVPRFY GQPFRYISGSIHYSRVPRFYWKDRLLKMKM R Y I S R V 0 1 0 0 0 0 0 1 1 2 0 0 0 0 0 3 0 0 2 0 0 0 10 0 1181.5829 P16278 P16278 50 59 GLB1 Beta-galactosidase yes yes 2 0.024095 80.688 By MS/MS 3.5 0.5 1 1 2 10705000 0 0 10705000 15728 576 16485 68748;68749 57946 57946 1 0 0 1968700 YISPDQLADLYK GKYDLDFKSPDDPSRYISPDQLADLYKSFI PSRYISPDQLADLYKSFIKDYPVVSIEDPF R Y I Y K S 1 0 0 2 0 1 0 0 0 1 2 1 0 0 1 1 0 0 2 0 0 0 12 0 1424.7187 P06733 P06733 270 281 ENO1 Alpha-enolase yes yes 2 1.9225E-05 152.97 By MS/MS By MS/MS By MS/MS 6.06 2.54 1 1 2 3 2 2 2 1 2 4 4 8 231640000 46289000 53406000 131950000 15729 448 16486 68750;68751;68752;68753;68754;68755;68756;68757;68758;68759;68760;68761;68762;68763;68764;68765 57947;57948;57949;57950;57951;57952;57953;57954;57955;57956;57957;57958;57959;57960;57961;57962;57963 57959 17 37563000 36358000 26352000 YISSQIERPIR GENGPVLEVICSRMRYISSQIERPIRIVAL SRMRYISSQIERPIRIVALSSSLSNAKDVA R Y I I R I 0 2 0 0 0 1 1 0 0 3 0 0 0 0 1 2 0 0 1 0 0 0 11 1 1360.7463 O75643 O75643 1476 1486 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 5.1552E-13 182.64 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 255660000 0 40729000 214930000 15730 277 16487 68766;68767;68768;68769 57964;57965;57966 57964 3 0 19908000 46356000 YITDWQNVFR NKAGVNFSEFTGVWKYITDWQNVFRTYDRD TGVWKYITDWQNVFRTYDRDNSGMIDKNEL K Y I F R T 0 1 1 1 0 1 0 0 0 1 0 0 0 1 0 0 1 1 1 1 0 0 10 0 1340.6513 O75340 O75340 91 100 PDCD6 Programmed cell death protein 6 yes yes 2 0.00011152 145.63 By matching By MS/MS 6.67 0.471 1 2 2 1 5602000 0 1150400 4451600 15731 250 16488 68770;68771;68772 57967 57967 1 0 504050 789910 YIVQVSPLGIR TQGPTVFAGNIGDNRYIVQVSPLGIRLLEG GDNRYIVQVSPLGIRLLEGVNQLHFIPVDL R Y I I R L 0 1 0 0 0 1 0 1 0 2 1 0 0 0 1 1 0 0 1 2 0 0 11 0 1243.7289 Q10570 Q10570 617 627 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 yes yes 2 0.031062 78.334 By matching By MS/MS 1.33 0.471 2 1 1 2 11011000 1245200 9766100 0 15732 1194 16489 68773;68774;68775 57968 57968 1 1245200 4526800 0 YKAEDEVQR LSKEEIERMVQEAEKYKAEDEVQRERVSAK VQEAEKYKAEDEVQRERVSAKNALESYAFN K Y K Q R E 1 1 0 1 0 1 2 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 9 1 1136.5462 P0DMV9;P0DMV8 P0DMV9 525 533 HSPA1B;HSPA1A Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 1A no no 2 0.0043731 117.04 By MS/MS By MS/MS 4.67 1.49 2 1 1 1 1 5 1 89569000 0 38761000 50808000 15733 501 16490 68776;68777;68778;68779;68780;68781 57969;57970 57970 2 0 16249000 9854300 YKAPFHQLR RRISIKKALDTKIGRYKAPFHQLRISYGTN DTKIGRYKAPFHQLRISYGTNKGKNYTEEE R Y K L R I 1 1 0 0 0 1 0 0 1 0 1 1 0 1 1 0 0 0 1 0 0 0 9 1 1158.6298 O60264;P28370 O60264 928 936 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 0.025306 100.45 By MS/MS 1.5 0.5 1 1 2 7633800 0 0 7633800 15734 223;693 16491 68782;68783 57971 57971 1 0 0 1701700 YKAQMEQLNGVLLHLESELAQTR QNINLENSLGDVEARYKAQMEQLNGVLLHL NGVLLHLESELAQTRAEGQRQAQEYEALLN R Y K T R A 2 1 1 0 0 3 3 1 1 0 5 1 1 0 0 1 1 0 1 1 0 0 23 1 2670.3799 CON__P05784 CON__P05784 324 346 yes yes 3 0.00063786 61.511 By MS/MS 4 0 1 1 2495700 0 0 2495700 + 15735 48 16492 68784 57972 57972 24 1 0 0 407630 YKDAIHFYNK KAYARIGNSYFKEEKYKDAIHFYNKSLAEH FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ K Y K N K S 1 0 1 1 0 0 0 0 1 1 0 2 0 1 0 0 0 0 2 0 0 0 10 1 1297.6455 P31948 P31948 316 325 STIP1 Stress-induced-phosphoprotein 1 yes yes 3 0.061009 47.844 By MS/MS 4 0 1 1 2888500 0 2888500 0 15736 726 16493 68785 57973 57973 1 0 958600 0 YKDDPVDLR EMKSPREPGYKAEGKYKDDPVDLRLDIERR YKAEGKYKDDPVDLRLDIERRKKHKERDLK K Y K L R L 0 1 0 3 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 1 0 0 9 1 1119.556 Q9Y2W1 Q9Y2W1 710 718 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 2 0.018434 104.2 By matching By MS/MS By MS/MS 2 0.632 1 3 1 2 1 2 38191000 13418000 7546600 17226000 15737 2252 16494 68786;68787;68788;68789;68790 57974;57975 57974 2 15689000 3398300 3773700 YKDLVPDNSK LGLAVRLEYGDNAEKYKDLVPDNSKTADNA DNAEKYKDLVPDNSKTADNATKNAEPLINL K Y K S K T 0 0 1 2 0 0 0 0 0 0 1 2 0 0 1 1 0 0 1 1 0 0 10 1 1177.5979 Q9Y224 Q9Y224 99 108 C14orf166 UPF0568 protein C14orf166 yes yes 2 0.051236 94.409 By MS/MS By matching 7 0 2 1 1 11611000 0 4117400 7493800 15738 2227 16495 68791;68792 57976 57976 1 0 2364300 1329700 YKEETIEK ERKAKSRQVGKEKGKYKEETIEKMQE____ VGKEKGKYKEETIEKMQE____________ K Y K E K M 0 0 0 0 0 0 3 0 0 1 0 2 0 0 0 0 1 0 1 0 0 0 8 1 1038.5233 P61254 P61254 135 142 RPL26 60S ribosomal protein L26 yes yes 2 0.0013745 141.48 By MS/MS 8 1.41 1 1 1 1 1 5 109250000 0 0 109250000 15739 989 16496 68793;68794;68795;68796;68797 57977 57977 1 0 0 19633000 YKEVAELTR ESPDVRGRLSGIEERYKEVAELTRLRKQAL SGIEERYKEVAELTRLRKQALQDTLALYKM R Y K T R L 1 1 0 0 0 0 2 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 9 1 1107.5924 Q01082 Q01082 831 839 SPTBN1 Spectrin beta chain, non-erythrocytic 1 yes yes 2 0.021325 102.62 By MS/MS 1 0 1 1 27307000 0 0 27307000 15740 1128 16497 68798 57978 57978 1 0 0 5883800 YKPESEELTAER CPAVRLITLEEEMTKYKPESEELTAERITE MTKYKPESEELTAERITEFCHRFLEGKIKP K Y K E R I 1 1 0 0 0 0 4 0 0 0 1 1 0 0 1 1 1 0 1 0 0 0 12 1 1450.694 P07237 P07237 327 338 P4HB Protein disulfide-isomerase yes yes 2 0.049846 99.973 By MS/MS 4 0 1 1 5237600 0 0 5237600 15741 456 16498 68799 57979 57979 1 0 0 855470 YLAEFATGNDR ESKVFYYKMKGDYHRYLAEFATGNDRKEAA DYHRYLAEFATGNDRKEAAENSLVAYKAAS R Y L D R K 2 1 1 1 0 0 1 1 0 0 1 0 0 1 0 0 1 0 1 0 0 0 11 0 1255.5833 P62258 P62258 131 141 YWHAE 14-3-3 protein epsilon yes yes 2 7.4442E-06 152.11 By matching By MS/MS 6 0.816 1 1 1 1 2 46814000 1556000 0 45258000 15742 1011 16499 68800;68801;68802 57980 57980 1 1246500 0 7000800 YLAEFATGNDRK ESKVFYYKMKGDYHRYLAEFATGNDRKEAA YHRYLAEFATGNDRKEAAENSLVAYKAASD R Y L R K E 2 1 1 1 0 0 1 1 0 0 1 1 0 1 0 0 1 0 1 0 0 0 12 1 1383.6783 P62258 P62258 131 142 YWHAE 14-3-3 protein epsilon yes yes 2;3 7.9597E-12 179.1 By MS/MS By MS/MS 6.25 0.433 3 1 1 3 106110000 0 15391000 90722000 15743 1011 16500 68803;68804;68805;68806 57981;57982;57983;57984 57981 4 0 5327800 13719000 YLAEVAAGDDKK ESKVFYLKMKGDYYRYLAEVAAGDDKKGIV YYRYLAEVAAGDDKKGIVDQSQQAYQEAFE R Y L K K G 3 0 0 2 0 0 1 1 0 0 1 2 0 0 0 0 0 0 1 1 0 0 12 1 1278.6456 P63104 P63104 128 139 YWHAZ 14-3-3 protein zeta/delta yes yes 2;3 1.5138E-05 158.79 By MS/MS By MS/MS 7.33 1.33 3 3 1 1 1 2 7 222880000 0 11874000 211000000 15744 1059 16501 68807;68808;68809;68810;68811;68812;68813;68814;68815 57985;57986;57987;57988;57989;57990 57989 6 0 5510500 36997000 YLAEVATGEKR ESKVFYLKMKGDYYRYLAEVATGEKRATVV DYYRYLAEVATGEKRATVVESSEKAYSEAH R Y L K R A 2 1 0 0 0 0 2 1 0 0 1 1 0 0 0 0 1 0 1 1 0 0 11 1 1235.651 P61981 P61981 133 143 YWHAG 14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed yes yes 2 0.044573 76.221 By MS/MS 7 0 1 1 0 0 0 0 15745 1003 16502 68816 57991 57991 1 0 0 0 YLAIAPPIIK IIIGQESITYHNGDKYLAIAPPIIKQSTIV HNGDKYLAIAPPIIKQSTIVCHNRVDPNGS K Y L I K Q 2 0 0 0 0 0 0 0 0 3 1 1 0 0 2 0 0 0 1 0 0 0 10 0 1097.6849 Q16531 Q16531 245 254 DDB1 DNA damage-binding protein 1 yes yes 2 0.051291 72.485 By matching By MS/MS 2.4 1.5 2 1 1 1 1 4 32818000 561210 0 32257000 15746 1387 16503 68817;68818;68819;68820;68821 57992 57992 1 561210 0 6933000 YLAIHGMETLK LAHYQSKKHANKVKRYLAIHGMETLKGETK KVKRYLAIHGMETLKGETKKLDSDQKSSRS R Y L L K G 1 0 0 0 0 0 1 1 1 1 2 1 1 0 0 0 1 0 1 0 0 0 11 0 1274.6693 Q9UL40 Q9UL40 104 114 ZNF346 Zinc finger protein 346 yes yes 2 0.057397 72.042 By MS/MS 6 0 1 1 9734400 0 0 9734400 15747 2187 16504 68822 57993 57993 1 0 0 1456400 YLANIEQQHGNSGR NPLCDLTPIFKDYEKYLANIEQQHGNSGRN KYLANIEQQHGNSGRNSESESNKVAAETQS K Y L G R N 1 1 2 0 0 2 1 2 1 1 1 0 0 0 0 1 0 0 1 0 0 0 14 0 1585.7597 Q9UKX7 Q9UKX7 193 206 NUP50 Nuclear pore complex protein Nup50 yes yes 3 0.052589 41.051 By matching By MS/MS 4 0 2 1 1 23406000 16729000 0 6676900 15748 2185 16505 68823;68824 57994 57994 1 13052000 0 1090500 YLAPSGPSGTLK EFRSGKVAFRDCEGRYLAPSGPSGTLKAGK EGRYLAPSGPSGTLKAGKATKVGKDELFAL R Y L L K A 1 0 0 0 0 0 0 2 0 0 2 1 0 0 2 2 1 0 1 0 0 0 12 0 1189.6343 Q16658 Q16658 230 241 FSCN1 Fascin yes yes 2 0.059754 70.552 By MS/MS 4 0 1 1 7110000 0 7110000 0 15749 1397 16506 68825 57995 57995 1 0 2359500 0 YLASGSGDTTVR HSEAVISVAFSPTGKYLASGSGDTTVRFWD TGKYLASGSGDTTVRFWDLSTETPHFTCKG K Y L V R F 1 1 0 1 0 0 0 2 0 0 1 0 0 0 0 2 2 0 1 1 0 0 12 0 1225.5939 Q9NVX2 Q9NVX2 128 139 NLE1 Notchless protein homolog 1 yes yes 2 8.7127E-25 147.75 By MS/MS By MS/MS 4 0 2 1 1 0 0 0 0 15750 2073 16507 68826;68827 57996;57997 57997 2 0 0 0 YLDEADRDKER LGNEWSKLPPEEKQRYLDEADRDKERYMKE EKQRYLDEADRDKERYMKELEQYQKTEAYK R Y L E R Y 1 2 0 3 0 0 2 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 11 2 1408.6583 Q9NP66 Q9NP66 152 162 HMG20A High mobility group protein 20A yes yes 3 0.0014771 101.93 By MS/MS 4.5 0.5 1 1 2 3933000 0 0 3933000 15751 2018 16508 68828;68829 57998;57999 57999 2 0 0 557870 YLDFSSIITEVR QASDTSVVLSMDNNRYLDFSSIITEVRARY NNRYLDFSSIITEVRARYEEIARSSKAEAE R Y L V R A 0 1 0 1 0 0 1 0 0 2 1 0 0 1 0 2 1 0 1 1 0 0 12 0 1441.7453 CON__Q8N1N4-2;CON__Q7RTT2;Q8N1N4 CON__Q8N1N4-2 275 286 KRT78 Keratin, type II cytoskeletal 78 yes no 2 4.6874E-06 161.17 By MS/MS By matching By MS/MS 5.27 2.63 1 1 1 2 1 1 1 1 2 4 1 6 56617000 30699000 3308300 22609000 + 15752 94 16509 68830;68831;68832;68833;68834;68835;68836;68837;68838;68839;68840 58000;58001;58002;58003;58004;58005;58006;58007 58001 8 23427000 1489800 4181000 YLDGLTAER NLEPIFQGYIDSLKRYLDGLTAERTSQNSE IDSLKRYLDGLTAERTSQNSELNNMQDLVE R Y L E R T 1 1 0 1 0 0 1 1 0 0 2 0 0 0 0 0 1 0 1 0 0 0 9 0 1036.5189 CON__P35908;CON__P35908v2;P35908 CON__P35908 245 253 KRT2 Keratin, type II cytoskeletal 2 epidermal no no 2 6.4031E-13 174.52 By MS/MS By MS/MS By MS/MS 5.72 2.97 5 3 4 4 4 4 5 4 4 6 20 9 14 7902700000 5052500000 325380000 2524800000 + 15753 65;66 16510 68841;68842;68843;68844;68845;68846;68847;68848;68849;68850;68851;68852;68853;68854;68855;68856;68857;68858;68859;68860;68861;68862;68863;68864;68865;68866;68867;68868;68869;68870;68871;68872;68873;68874;68875;68876;68877;68878;68879;68880;68881;68882;68883 58008;58009;58010;58011;58012;58013;58014;58015;58016;58017;58018;58019;58020;58021;58022;58023;58024;58025;58026;58027;58028;58029;58030;58031;58032;58033;58034;58035;58036;58037;58038;58039;58040;58041;58042;58043;58044;58045;58046 58035 39 4503900000 343180000 1003000000 YLDLILNDFVR LHFGLKDKETRYRQRYLDLILNDFVRQKFI YRQRYLDLILNDFVRQKFIIRSKIITYIRS R Y L V R Q 0 1 1 2 0 0 0 0 0 1 3 0 0 1 0 0 0 0 1 1 0 0 11 0 1379.7449 Q15046 Q15046 231 241 KARS Lysine--tRNA ligase yes yes 2 0.0055877 99.815 By MS/MS 3 0 1 1 4418000 0 0 4418000 15754 1336 16511 68884 58047 58047 1 0 0 856880 YLDWAYR LLAVIGADSVTLKNKYLDWAYRSGGYKKAR DSVTLKNKYLDWAYRSGGYKKARAVFKSLQ K Y L Y R S 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 2 0 0 0 7 0 985.46577 Q9NYH9 Q9NYH9 480 486 UTP6 U3 small nucleolar RNA-associated protein 6 homolog yes yes 2 0.018483 105.27 By matching By MS/MS By MS/MS 2.86 0.99 1 1 3 2 3 2 2 40921000 18013000 7872000 15036000 15755 2098 16512 68885;68886;68887;68888;68889;68890;68891 58048;58049;58050 58050 3 21067000 2834800 2858900 YLENQTFR VVMVHEPKQKVDLTRYLENQTFRFDYAFDD QKVDLTRYLENQTFRFDYAFDDSAPNEMVY R Y L F R F 0 1 1 0 0 1 1 0 0 0 1 0 0 1 0 0 1 0 1 0 0 0 8 0 1069.5193 O00139 O00139 268 275 KIF2A Kinesin-like protein KIF2A yes yes 2 0.00084705 124.08 By MS/MS By MS/MS 3 0 2 1 1 31573000 0 7819600 23753000 15756 104 16513 68892;68893 58051;58052 58052 2 0 3333500 4606900 YLEPLYNDYRK ALYMRLTGTAIDCYKYLEPLYNDYRKIKSQ DCYKYLEPLYNDYRKIKSQNRNGEFELMHV K Y L R K I 0 1 1 1 0 0 1 0 0 0 2 1 0 0 1 0 0 0 3 0 0 0 11 1 1472.73 Q8NAV1 Q8NAV1 119 129 PRPF38A Pre-mRNA-splicing factor 38A yes yes 2;3 0.0029345 96.331 By MS/MS By MS/MS 5.33 0.471 2 1 2 1 9813400 0 4129100 5684300 15757 1622 16514 68894;68895;68896 58053;58054 58053 2 0 1184600 792850 YLESEEYQER LSSVPISPYKDEPWKYLESEEYQERYGSRP DEPWKYLESEEYQERYGSRPVWADYRRNHK K Y L E R Y 0 1 0 0 0 1 4 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 10 0 1344.5834 Q9Y676 Q9Y676 58 67 MRPS18B 28S ribosomal protein S18b, mitochondrial yes yes 2 4.1162E-07 159.11 By matching By MS/MS 6 0 2 1 1 7681500 0 922550 6759000 15758 2307 16515 68897;68898 58055 58055 1 0 319360 1011200 YLFIFSVANMR QNLIEELRKCVDTYKYLFIFSVANMRNSKL DTYKYLFIFSVANMRNSKLKDIRNAWKHSR K Y L M R N 1 1 1 0 0 0 0 0 0 1 1 0 1 2 0 1 0 0 1 1 0 0 11 0 1359.7009 Q9UKD2 Q9UKD2 39 49 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.00032747 124.23 By matching By MS/MS 6.33 0.471 2 1 1 2 9255500 0 375690 8879800 15759 2177 16516 68899;68900;68901 58056 58056 1 0 130050 1375200 YLFTLIR PLDDLDREDEVRLLKYLFTLIRAGMTEEAQ EDEVRLLKYLFTLIRAGMTEEAQRLCKRCG K Y L I R A 0 1 0 0 0 0 0 0 0 1 2 0 0 1 0 0 1 0 1 0 0 0 7 0 924.54329 P57740 P57740 349 355 NUP107 Nuclear pore complex protein Nup107 yes yes 2 0.0014 149.06 By MS/MS 2 0 1 1 7312000 0 0 7312000 15760 956 16517 68902 58057 58057 1 0 0 1652400 YLGEEYVK TVCLAKLHDRNTYEKYLGEEYVKAVGNLRK DRNTYEKYLGEEYVKAVGNLRKCSTSSLLE K Y L V K A 0 0 0 0 0 0 2 1 0 0 1 1 0 0 0 0 0 0 2 1 0 0 8 0 999.49131 P02787 P02787 669 676 TF Serotransferrin yes yes 2 0.016621 86.953 By MS/MS 9 0 1 1 123890000 123890000 0 0 15761 399 16518 68903 58058 58058 1 69541000 0 0 YLGGSMDLSTFDFR SPSGKKFRSKPQLARYLGGSMDLSTFDFRT RYLGGSMDLSTFDFRTGKMLMSKMNKSRQR R Y L F R T 0 1 0 2 0 0 0 2 0 0 2 0 1 2 0 2 1 0 1 0 0 0 14 0 1607.729 O95983 O95983 52 65 MBD3 Methyl-CpG-binding domain protein 3 yes yes 2 3.6627E-07 166.69 By matching By MS/MS 6 0 2 1 1 4822000 0 920210 3901800 15762 351 16519 68904;68905 58059 58059 1 0 318550 583750 YLGLLENLR QPGRFDEVLIRHQVKYLGLLENLRVRRAGF IRHQVKYLGLLENLRVRRAGFAYRRKYEAF K Y L L R V 0 1 1 0 0 0 1 1 0 0 4 0 0 0 0 0 0 0 1 0 0 0 9 0 1089.6182 O00159 O00159 648 656 MYO1C Unconventional myosin-Ic yes yes 2 5.5912E-05 147.34 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 18993000 0 8178800 10814000 15763 106 16520 68906;68907;68908 58060;58061 58061 2 0 3710000 2443800 YLGPQYVAGITNLK TECLARLHGKTTYEKYLGPQYVAGITNLKK KYLGPQYVAGITNLKKCSTSPLLEACEFLR K Y L L K K 1 0 1 0 0 1 0 2 0 1 2 1 0 0 1 0 1 0 2 1 0 0 14 0 1535.8348 P02788 P02788 681 694 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2 2.4274E-11 178.46 By MS/MS 5.56 3.02 1 1 1 1 1 1 1 1 1 9 192240000 192240000 0 0 15764 400 16521 68909;68910;68911;68912;68913;68914;68915;68916;68917 58062;58063;58064;58065;58066;58067;58068;58069;58070;58071;58072;58073;58074 58074 13 221620000 0 0 YLGPQYVAGITNLKK TECLARLHGKTTYEKYLGPQYVAGITNLKK YLGPQYVAGITNLKKCSTSPLLEACEFLRK K Y L K K C 1 0 1 0 0 1 0 2 0 1 2 2 0 0 1 0 1 0 2 1 0 0 15 1 1663.9297 P02788 P02788 681 695 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C yes yes 2;3 6.8445E-05 118.48 By MS/MS 5.71 2.86 2 2 2 2 1 2 3 3 2 2 21 163440000 163440000 0 0 15765 400 16522 68918;68919;68920;68921;68922;68923;68924;68925;68926;68927;68928;68929;68930;68931;68932;68933;68934;68935;68936;68937;68938 58075;58076;58077;58078;58079;58080;58081;58082;58083;58084;58085;58086 58085 12 196030000 0 0 YLGQDYEQLR RARELGLGRHENAIKYLGQDYEQLRVRCLQ ENAIKYLGQDYEQLRVRCLQSGTLFRDEAF K Y L L R V 0 1 0 1 0 2 1 1 0 0 2 0 0 0 0 0 0 0 2 0 0 0 10 0 1283.6146 P07384 P07384 37 46 CAPN1 Calpain-1 catalytic subunit yes yes 2 0.0083854 90.601 By MS/MS 3.5 0.5 1 1 2 8646800 0 0 8646800 15766 460 16523 68939;68940 58087 58087 1 0 0 1560100 YLGYLEQLLR VEQKHIQKEDVPSERYLGYLEQLLRLKKYK VPSERYLGYLEQLLRLKKYKVPQLEIVPNS R Y L L R L 0 1 0 0 0 1 1 1 0 0 4 0 0 0 0 0 0 0 2 0 0 0 10 0 1266.6972 CON__P02662 CON__P02662 91 100 yes yes 2 0.00052978 128.69 By MS/MS By MS/MS 5.64 2.35 1 1 2 1 1 2 2 1 7 4 56758000 42135000 0 14623000 + 15767 39 16524 68941;68942;68943;68944;68945;68946;68947;68948;68949;68950;68951 58088;58089;58090;58091;58092;58093;58094;58095;58096;58097 58096 10 35011000 0 2302600 YLIANATNPESK ELRSICTTVLELLDKYLIANATNPESKVFY LDKYLIANATNPESKVFYLKMKGDYFRYLA K Y L S K V 2 0 2 0 0 0 1 0 0 1 1 1 0 0 1 1 1 0 1 0 0 0 12 0 1319.6721 P27348 P27348 104 115 YWHAQ 14-3-3 protein theta yes yes 2 0.0010417 117.7 By MS/MS By MS/MS 6.67 0.471 1 2 1 2 45649000 0 3610900 42038000 15768 676 16525 68952;68953;68954 58098;58099;58100 58098 3 0 2073400 7189500 YLIGELVSSK WENIATILEAKCALKYLIGELVSSKIQVSK KCALKYLIGELVSSKIQVSKLESSLKQSKT K Y L S K I 0 0 0 0 0 0 1 1 0 1 2 1 0 0 0 2 0 0 1 1 0 0 10 0 1107.6176 O95239;Q2VIQ3 O95239 869 878 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B yes no 2 0.041934 72.643 By MS/MS 1 0 1 1 0 0 0 0 15769 314 16526 68955 58101 58101 1 0 0 0 YLILPVHSNIPMMDQK VQQRLQEALGMHESKYLILPVHSNIPMMDQ LILPVHSNIPMMDQKAIFQQPPVGVRKIVL K Y L Q K A 0 0 1 1 0 1 0 0 1 2 2 1 2 0 2 1 0 0 1 1 0 0 16 0 1897.9794 Q7L2E3 Q7L2E3 699 714 DHX30 Putative ATP-dependent RNA helicase DHX30 yes yes 3 0.00063077 85.493 By MS/MS By MS/MS 2.4 1.02 1 2 1 1 1 4 45746000 0 10782000 34964000 15770 1522 16527 68956;68957;68958;68959;68960 58102;58103 58102 2 0 4855200 7617000 YLINGVNANNTR EITVTRQVVIGGRNKYLINGVNANNTRVQD RNKYLINGVNANNTRVQDLFCSVGLNVNNP K Y L T R V 1 1 4 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 1 1 0 0 12 0 1347.6895 O95347 O95347 115 126 SMC2 Structural maintenance of chromosomes protein 2 yes yes 2 0.0016359 111.06 By MS/MS 2 0 1 1 5133200 0 0 5133200 15771 321 16528 68961 58104 58104 1 0 0 1160000 YLIPNATQPESK ELQDICNDVLELLDKYLIPNATQPESKVFY LDKYLIPNATQPESKVFYLKMKGDYFRYLS K Y L S K V 1 0 1 0 0 1 1 0 0 1 1 1 0 0 2 1 1 0 1 0 0 0 12 0 1359.7034 P31946 P31946 106 117 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2 0.0085247 96.665 By MS/MS By MS/MS 7 0 2 1 1 58694000 0 11764000 46930000 15772 724 16529 68962;68963 58105;58106 58106 2 0 6755200 8327400 YLKDVTLQK TAQAIKGMHIRKATKYLKDVTLQKQCVPFR IRKATKYLKDVTLQKQCVPFRRYNGGVGRC K Y L Q K Q 0 0 0 1 0 1 0 0 0 0 2 2 0 0 0 0 1 0 1 1 0 0 9 1 1106.6336 P18621 P18621 47 55 RPL17 60S ribosomal protein L17 yes yes 2 0.011637 107.9 By MS/MS By matching 7 0 2 1 1 22701000 0 19403000 3298500 15773 597 16530 68964;68965 58107 58107 1 0 11141000 585290 YLLGDMEGR STIVCHNRVDPNGSRYLLGDMEGRLFMLLL DPNGSRYLLGDMEGRLFMLLLEKEEQMDGT R Y L G R L 0 1 0 1 0 0 1 2 0 0 2 0 1 0 0 0 0 0 1 0 0 0 9 0 1052.4961 Q16531 Q16531 271 279 DDB1 DNA damage-binding protein 1 yes yes 2 0.0027835 102.51 By MS/MS 2 0.816 1 1 1 3 21382000 0 0 21382000 15774 1387 16531 68966;68967;68968 58108 58108 1 0 0 4669200 YLLLNPK STWEKELHKIVFDPRYLLLNPKERKQVFDQ HKIVFDPRYLLLNPKERKQVFDQYVKTRAE R Y L P K E 0 0 1 0 0 0 0 0 0 0 3 1 0 0 1 0 0 0 1 0 0 0 7 0 859.51674 O14776 O14776 694 700 TCERG1 Transcription elongation regulator 1 yes yes 2 0.039331 84.025 By MS/MS 2 0 1 1 7759800 0 7759800 0 15775 145 16532 68969 58109 58109 1 0 3494400 0 YLLPLILGGR IMAGIAFGFHQLYKKYLLPLILGGREDRKQ QLYKKYLLPLILGGREDRKQLERMEAGLSE K Y L G R E 0 1 0 0 0 0 0 2 0 1 4 0 0 0 1 0 0 0 1 0 0 0 10 0 1113.691 O75381 O75381 130 139 PEX14 Peroxisomal membrane protein PEX14 yes yes 2 0.00045597 127.12 By MS/MS By MS/MS 4.75 0.829 2 1 1 2 2 5946000 0 3292300 2653700 15776 255 16533 68970;68971;68972;68973 58110;58111 58111 2 0 948950 417180 YLLSQSSPAPLTAAEEELR FGTVKEDVSLHGYKKYLLSQSSPAPLTAAE QSSPAPLTAAEEELRQIKINEVQTDVGVDT K Y L L R Q 3 1 0 0 0 1 3 0 0 0 4 0 0 0 2 3 1 0 1 0 0 0 19 0 2074.0582 Q12792 Q12792 137 155 TWF1 Twinfilin-1 yes yes 2 5.5587E-09 148.72 By MS/MS 6 0 1 1 1688400 0 1688400 0 15777 1199 16534 68974 58112 58112 1 0 584460 0 YLMEEDEDAYKK HRKHIMGQNVADYMRYLMEEDEDAYKKQFS YMRYLMEEDEDAYKKQFSQYIKNSVTPDMM R Y L K K Q 1 0 0 2 0 0 3 0 0 0 1 2 1 0 0 0 0 0 2 0 0 0 12 1 1532.6705 P46777 P46777 210 221 RPL5 60S ribosomal protein L5 yes yes 2;3 0.0028854 108.67 By MS/MS By MS/MS 5.5 0.707 1 2 5 2 6 246870000 0 10505000 236360000 15778 828 16535;16536 68975;68976;68977;68978;68979;68980;68981;68982 58113;58114;58115;58116;58117;58118 58118 406 6 0 3636400 35021000 YLNEQLYSGPSSAAQR LRARMAQRLDGARFRYLNEQLYSGPSSAAQ LNEQLYSGPSSAAQRLFQEDPEAFLLYHRG R Y L Q R L 2 1 1 0 0 2 1 1 0 0 2 0 0 0 1 3 0 0 2 0 0 0 16 0 1782.8537 O43159 O43159 253 268 RRP8 Ribosomal RNA-processing protein 8 yes yes 2 3.9389E-74 240.8 By MS/MS By MS/MS 3.5 0.5 2 2 2 2 54348000 0 18810000 35538000 15779 188 16537 68983;68984;68985;68986 58119;58120;58121 58121 3 0 6365100 5987400 YLNFFTK TIEMNEPVQLTFALRYLNFFTKATPLSSTV VQLTFALRYLNFFTKATPLSSTVTLSMSAD R Y L T K A 0 0 1 0 0 0 0 0 0 0 1 1 0 2 0 0 1 0 1 0 0 0 7 0 931.48035 P12004 P12004 211 217 PCNA Proliferating cell nuclear antigen yes yes 2 0.010692 119.56 By MS/MS By MS/MS By MS/MS 6.4 0.49 3 2 2 1 2 80033000 10433000 13156000 56443000 15780 531 16538 68987;68988;68989;68990;68991 58122;58123;58124 58123 3 16544000 4554300 8468200 YLNTNPVGGLLEYAR SMMPNKVRKIGELVRYLNTNPVGGLLEYAR YLNTNPVGGLLEYARSHGFAAEFKLVDQSG R Y L A R S 1 1 2 0 0 0 1 2 0 0 3 0 0 0 1 0 1 0 2 1 0 0 15 0 1678.8679 P55265 P55265 722 736 ADAR Double-stranded RNA-specific adenosine deaminase yes yes 2 1.1653E-11 180.2 By MS/MS By MS/MS 2.62 1.32 2 2 2 1 1 4 4 170280000 0 78191000 92084000 15781 941 16539 68992;68993;68994;68995;68996;68997;68998;68999 58125;58126;58127;58128;58129;58130;58131 58130 7 0 32498000 18815000 YLPHSAGR ISLQDYIAVKEKYAKYLPHSAGRYAAKRFR VKEKYAKYLPHSAGRYAAKRFRKAQCPIVE K Y L G R Y 1 1 0 0 0 0 0 1 1 0 1 0 0 0 1 1 0 0 1 0 0 0 8 0 899.46135 P46782 P46782 48 55 RPS5 40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed yes yes 2 0.0025038 108.24 By MS/MS By MS/MS 7 0 2 1 1 15348000 0 9111100 6236700 15782 832 16540 69000;69001 58132;58133 58132 2 0 5231700 1106700 YLPISHPR VTARVIGGRDMKTFKYLPISHPRFVRTIPE RDMKTFKYLPISHPRFVRTIPELSVRPSEL K Y L P R F 0 1 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 1 0 0 0 8 0 981.5396 Q14690 Q14690 1103 1110 PDCD11 Protein RRP5 homolog yes yes 2 0.010396 93.262 By MS/MS 1 0 1 1 4617900 0 4617900 0 15783 1314 16541 69002 58134 58134 1 0 2257200 0 YLPPATQVVLISATLPHEILEMTNK MLNKGFKEQIYDVYRYLPPATQVVLISATL ISATLPHEILEMTNKFMTDPIRILVKRDEL R Y L N K F 2 0 1 0 0 1 2 0 1 2 4 1 1 0 3 1 3 0 1 2 0 0 25 0 2777.5037 P38919 P38919 207 231 EIF4A3 Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed yes yes 3 3.3779E-16 101.5 By MS/MS By MS/MS 3.75 1.64 1 1 2 1 3 89685000 0 5547000 84138000 15784 775 16542;16543 69003;69004;69005;69006 58135;58136;58137;58138;58139 58138 386 5 0 1429900 13414000 YLQDSTFATSPHLESLLK ELELKWQHWHEECERYLQDSTFATSPHLES DSTFATSPHLESLLKIMLGDEAALLEQKEL R Y L L K I 1 0 0 1 0 1 1 0 1 0 4 1 0 1 1 3 2 0 1 0 0 0 18 0 2049.0419 Q9BW27 Q9BW27 268 285 NUP85 Nuclear pore complex protein Nup85 yes yes 2;3 2.8036E-08 116.98 By MS/MS By MS/MS 3 0 3 1 2 49347000 0 3234100 46113000 15785 1920 16544 69007;69008;69009 58140;58141;58142 58142 3 0 1378700 8943700 YLQQELPVR AGRSQDGSHLLKSARYLQQELPVRIAHRIK LLKSARYLQQELPVRIAHRIKGFRCLPFII R Y L V R I 0 1 0 0 0 2 1 0 0 0 2 0 0 0 1 0 0 0 1 1 0 0 9 0 1144.6241 O14874 O14874 93 101 BCKDK [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial yes yes 2 0.0022538 104.75 By MS/MS 5.5 0.5 1 1 2 7344900 0 7344900 0 15786 148 16545 69010;69011 58143 58143 1 0 2011000 0 YLQSLLAEVER SSRFMKVGYERDFLRYLQSLLAEVERRIRR DFLRYLQSLLAEVERRIRRGHARLALSQNQ R Y L E R R 1 1 0 0 0 1 2 0 0 0 3 0 0 0 0 1 0 0 1 1 0 0 11 0 1319.7085 O95232 O95232 88 98 LUC7L3 Luc7-like protein 3 yes yes 2 2.2204E-07 160.36 By MS/MS By MS/MS 4.29 1.03 2 2 2 1 3 4 112740000 0 15658000 97079000 15787 312 16546 69012;69013;69014;69015;69016;69017;69018 58144;58145;58146;58147;58148 58147 5 0 5198100 16130000 YLRPPNTSLFVR ______________________________ MSRYLRPPNTSLFVRNVADDTRSEDLRREF R Y L V R N 0 2 1 0 0 0 0 0 0 0 2 0 0 1 2 1 1 0 1 1 0 0 12 1 1461.8092 O75494 O75494 4 15 SRSF10 Serine/arginine-rich splicing factor 10 yes yes 2;3 1.6329E-57 233.84 By MS/MS By MS/MS 5.77 1.05 2 3 4 4 5 8 726590000 0 202980000 523610000 15788 267 16547 69019;69020;69021;69022;69023;69024;69025;69026;69027;69028;69029;69030;69031 58149;58150;58151;58152;58153;58154;58155;58156;58157;58158;58159;58160;58161;58162;58163;58164;58165;58166 58166 18 0 98411000 86048000 YLSEVASGDNK ESKVFYLKMKGDYFRYLSEVASGDNKQTTV DYFRYLSEVASGDNKQTTVSNSQQAYQEAF R Y L N K Q 1 0 1 1 0 0 1 1 0 0 1 1 0 0 0 2 0 0 1 1 0 0 11 0 1181.5564 P31946 P31946 130 140 YWHAB 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed yes yes 2 0.0072023 96.665 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 115430000 0 16123000 99303000 15789 724 16548 69032;69033;69034;69035 58167;58168;58169;58170 58170 4 0 8310800 16794000 YLSSQVDR Y L D R 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 8 0 966.47706 REV__P29144 yes yes 2 0.0015301 114.54 By MS/MS 7 0 1 1 78528000 78528000 0 0 + 15790 2329 16549 69036 58171 58171 1 169240000 0 0 YLTAEAFGFK EAVQIQFGLINCGNKYLTAEAFGFKVNASA NCGNKYLTAEAFGFKVNASASSLKKKQIWT K Y L F K V 2 0 0 0 0 0 1 1 0 0 1 1 0 2 0 0 1 0 1 0 0 0 10 0 1145.5757 Q16658 Q16658 23 32 FSCN1 Fascin yes yes 2 0.023023 81.296 By matching By MS/MS 10 0 2 1 1 4149800 0 1470400 2679400 15791 1397 16550 69037;69038 58172 58172 1 0 7438900 5860100 YLTAEETDK PPAIQSLINLLADNRYLTAEETDKIINYLR LLADNRYLTAEETDKIINYLRERKERLMRS R Y L D K I 1 0 0 1 0 0 2 0 0 0 1 1 0 0 0 0 2 0 1 0 0 0 9 0 1068.4975 Q9HCD5 Q9HCD5 354 362 NCOA5 Nuclear receptor coactivator 5 yes yes 2 0.025722 78.516 By MS/MS 5 0 1 1 13520000 0 0 13520000 15792 2010 16551 69039 58173 58173 1 0 0 1885800 YLTAEETDKIINYLR PPAIQSLINLLADNRYLTAEETDKIINYLR YLTAEETDKIINYLRERKERLMRSSTDSLP R Y L L R E 1 1 1 1 0 0 2 0 0 2 2 1 0 0 0 0 2 0 2 0 0 0 15 1 1840.9571 Q9HCD5 Q9HCD5 354 368 NCOA5 Nuclear receptor coactivator 5 yes yes 3 7.0373E-06 160.84 By MS/MS By MS/MS 4 0.816 1 1 1 1 2 14217000 0 2042900 12174000 15793 2010 16552 69040;69041;69042 58174;58175 58175 2 0 677950 2061100 YLTEHPDPNNENIVGYNNK FFRFTADEARDLIQRYLTEHPDPNNENIVG HPDPNNENIVGYNNKKCWPRDARMRLMKHD R Y L N K K 0 0 5 1 0 0 2 1 1 1 1 1 0 0 2 0 1 0 2 1 0 0 19 0 2230.0291 Q6P2Q9 Q6P2Q9 1113 1131 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2;3 1.0106E-51 218.11 By MS/MS By MS/MS 1 0 2 1 1 27022000 0 17399000 9623200 15794 1490 16553 69043;69044 58176;58177 58177 2 0 8504200 2073500 YLTEHPDPNNENIVGYNNKK FFRFTADEARDLIQRYLTEHPDPNNENIVG PDPNNENIVGYNNKKCWPRDARMRLMKHDV R Y L K K C 0 0 5 1 0 0 2 1 1 1 1 2 0 0 2 0 1 0 2 1 0 0 20 1 2358.124 Q6P2Q9 Q6P2Q9 1113 1132 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 3;4 4.1654E-15 157.11 By MS/MS By MS/MS 1 0 4 2 2 62207000 0 27457000 34750000 15795 1490 16554 69045;69046;69047;69048 58178;58179;58180;58181 58181 4 0 13421000 7487400 YLTESYGTGQDIDDR ESGAGKTENTKFVLRYLTESYGTGQDIDDR YLTESYGTGQDIDDRIVEANPLLEAFGNAK R Y L D R I 0 1 0 3 0 1 1 2 0 1 1 0 0 0 0 1 2 0 2 0 0 0 15 0 1731.7588 Q9UM54 Q9UM54 167 181 MYO6 Unconventional myosin-VI yes yes 2 3.4696E-25 201.6 By MS/MS 2 0 1 1 3175300 0 3175300 0 15796 2198 16555 69049 58182 58182 1 0 1429900 0 YLTQVATGQPHEGSSYSSR ASVQHVEAELSAQIRYLTQVATGQPHEGSS VATGQPHEGSSYSSRKDCQMALKRVDYARL R Y L S R K 1 1 0 0 0 2 1 2 1 0 1 0 0 0 1 4 2 0 2 1 0 0 19 0 2066.9657 Q9P086 Q9P086 69 87 MED11 Mediator of RNA polymerase II transcription subunit 11 yes yes 3 0.00011742 82.482 By MS/MS 9 0 1 1 6199200 0 0 6199200 15797 2113 16556 69050 58183 58183 1 0 0 1980300 YLTSFPIDDR PSFGEAMAYFAMVKRYLTSFPIDDRVQSHI AMVKRYLTSFPIDDRVQSHILHLEHDLVHV R Y L D R V 0 1 0 2 0 0 0 0 0 1 1 0 0 1 1 1 1 0 1 0 0 0 10 0 1225.5979 P07199 P07199 557 566 CENPB Major centromere autoantigen B yes yes 2 0.0033111 102.61 By matching By MS/MS 2.5 0.5 1 1 1 1 8117500 0 3115000 5002500 15798 455 16557 69051;69052 58184 58184 1 0 1402700 970240 YLTTAVITNK QYLNAIQTMCPHILRYLTTAVITNKDVRKR PHILRYLTTAVITNKDVRKRRQVLKDLVKV R Y L N K D 1 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 3 0 1 1 0 0 10 0 1122.6285 P60228 P60228 256 265 EIF3E Eukaryotic translation initiation factor 3 subunit E yes yes 2 0.05528 71.451 By MS/MS 5 0 1 1 10553000 0 10553000 0 15799 963 16558 69053 58185 58185 1 0 2720200 0 YLTVAAIFR DSKNMMAACDPRHGRYLTVAAIFRGRMSMK DPRHGRYLTVAAIFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 1 1 0 0 9 0 1052.6019 Q13885;Q9BVA1 Q13885 310 318 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain yes no 1;2 3.0608E-23 185.42 By MS/MS By MS/MS 5.4 1.28 3 3 2 1 1 3 7 112240000 0 41584000 70656000 15800 1274 16559 69054;69055;69056;69057;69058;69059;69060;69061;69062;69063 58186;58187;58188;58189;58190;58191;58192 58187 6 0 11623000 10789000 YLTVAAVFR DAKNMMAACDPRHGRYLTVAAVFRGRMSMK DPRHGRYLTVAAVFRGRMSMKEVDEQMLNV R Y L F R G 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 1 2 0 0 9 0 1038.5862 P07437;P68371;P04350 P68371 310 318 TUBB;TUBB4B;TUBB4A Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-4A chain no no 2 4.3412E-32 203.41 By MS/MS By MS/MS By MS/MS 5.48 2.59 2 1 2 3 3 2 2 3 2 1 3 9 9 2169800000 35012000 968170000 1166600000 15801 1079;462;414 16560 69064;69065;69066;69067;69068;69069;69070;69071;69072;69073;69074;69075;69076;69077;69078;69079;69080;69081;69082;69083;69084 58193;58194;58195;58196;58197;58198;58199;58200;58201;58202;58203;58204;58205;58206;58207;58208;58209;58210;58211;58212;58213;58214;58215;58216;58217;58218;58219;58220;58221;58222;58223 58201 31 27778000 313880000 185330000 YLTVATVFR DAKNMMAACDPRHGRYLTVATVFRGRMSMK DPRHGRYLTVATVFRGRMSMKEVDEQMLAI R Y L F R G 1 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 2 0 1 2 0 0 9 0 1068.5968 Q13509;Q9BUF5 Q13509 310 318 TUBB3;TUBB6 Tubulin beta-3 chain;Tubulin beta-6 chain no no 2 2.4438E-23 187.55 By MS/MS By MS/MS 5.44 1.64 1 2 2 2 2 5 4 129740000 0 59986000 69757000 15802 1254;1905 16561 69085;69086;69087;69088;69089;69090;69091;69092;69093 58224;58225;58226;58227;58228;58229;58230 58228 7 0 17473000 10783000 YLTVQNTVR EVLLPLGSEPELREKYLTVQNTVRFGRILE PELREKYLTVQNTVRFGRILEDLDSLGVLI K Y L V R F 0 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 2 0 1 2 0 0 9 0 1092.5928 Q9Y305 Q9Y305 104 112 ACOT9 Acyl-coenzyme A thioesterase 9, mitochondrial yes yes 2 0.00017473 141.39 By matching By MS/MS 3.5 1.12 1 1 1 1 1 3 81288000 8702900 0 72585000 15803 2256 16562 69094;69095;69096;69097 58231 58231 1 10486000 0 10735000 YLTWASR LVRWLQGSQELPREKYLTWASRQEPSQGTT SQELPREKYLTWASRQEPSQGTTTFAVTSI K Y L S R Q 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 1 1 0 0 0 7 0 895.4552 P01876;P0DOX2;P01877 P01876 276 282 IGHA1;IGHA2 Ig alpha-1 chain C region;Ig alpha-2 chain C region no no 2 0.0028633 139.27 By MS/MS 7 3.54 1 1 1 1 4 63842000 63842000 0 0 15804 386;503 16563 69098;69099;69100;69101 58232;58233 58233 1 65283000 0 0 YLVIDEAHR MLIKEKSVFKKFNWRYLVIDEAHRIKNEKS KKFNWRYLVIDEAHRIKNEKSKLSEIVREF R Y L H R I 1 1 0 1 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 9 0 1114.5771 O60264;P28370 O60264 304 312 SMARCA5;SMARCA1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1 no no 2 1.4317E-07 161.11 By matching By MS/MS By matching 2 0.707 1 2 1 2 1 1 839100000 253080000 87291000 498740000 15805 223;693 16564 69102;69103;69104;69105 58234 58234 1 277350000 39309000 96731000 YLVLDEADR VDMMERGKIGLDFCKYLVLDEADRMLDMGF GLDFCKYLVLDEADRMLDMGFEPQIRRIVE K Y L D R M 1 1 0 2 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 1 0 0 9 0 1092.5451 O00571;O15523;Q9NQI0 O00571 343 351 DDX3X;DDX3Y;DDX4 ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4 yes no 2 0.00098008 110.12 By MS/MS By MS/MS 3 0 2 1 1 88367000 0 16041000 72326000 15806 131 16565 69106;69107 58235;58236 58235 2 0 6838300 14028000 YLVMDEADR DHLENTKGFNLRALKYLVMDEADRILNMDF NLRALKYLVMDEADRILNMDFETEVDKILK K Y L D R I 1 1 0 2 0 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 0 0 9 0 1110.5016 Q9H0S4 Q9H0S4 170 178 DDX47 Probable ATP-dependent RNA helicase DDX47 yes yes 2 0.00029418 110.31 By MS/MS 5 0 1 1 0 0 0 0 15807 1964 16566 69108 58237 58237 1 0 0 0 YLVPDLVQEYIEK STKIRRALRRGQSIRYLVPDLVQEYIEKHN IRYLVPDLVQEYIEKHNLYSSESEDRNAGV R Y L E K H 0 0 0 1 0 1 2 0 0 1 2 1 0 0 1 0 0 0 2 2 0 0 13 0 1607.8447 Q9HAN9 Q9HAN9 238 250 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 yes yes 2 0.0042441 102.53 By matching By MS/MS 6 0 2 1 1 11876000 0 793460 11082000 15808 2002 16567 69109;69110 58238 58238 1 0 274670 1658000 YLVQDTDEFILPTGANK TGMNPLSPYLNVDPRYLVQDTDEFILPTGA VQDTDEFILPTGANKTRGRFELAFFTIGGC R Y L N K T 1 0 1 2 0 1 1 1 0 1 2 1 0 1 1 0 2 0 1 1 0 0 17 0 1922.9626 O14925;Q5SRD1 O14925 52 68 TIMM23;TIMM23B Mitochondrial import inner membrane translocase subunit Tim23;Putative mitochondrial import inner membrane translocase subunit Tim23B yes no 2 0.0010769 93.011 By MS/MS 7 0 1 1 4755700 0 0 4755700 15809 152 16568 69111 58239 58239 1 0 0 843870 YLYEIAR MCTAFHDNEETFLKKYLYEIARRHPYFYAP NEETFLKKYLYEIARRHPYFYAPELLFFAK K Y L A R R 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 7 0 926.48617 CON__P02768-1;P02768;CON__P02769 CON__P02768-1 162 168 ALB Serum albumin no no 2 0.0021746 146.21 By MS/MS By MS/MS By MS/MS 5.81 3.11 3 2 3 2 2 2 3 2 2 5 12 6 8 4053300000 3571400000 230810000 251100000 + 15810 44;45 16569 69112;69113;69114;69115;69116;69117;69118;69119;69120;69121;69122;69123;69124;69125;69126;69127;69128;69129;69130;69131;69132;69133;69134;69135;69136;69137 58240;58241;58242;58243;58244;58245;58246;58247;58248;58249;58250;58251;58252;58253;58254;58255;58256;58257;58258;58259;58260;58261;58262;58263;58264;58265;58266;58267 58248 28 3471700000 472140000 109760000 YLYHGNTNPELAFESAK NPRTKKADNVVNIARYLYHGNTNPELAFES YHGNTNPELAFESAKILCCISCNSNIQIKL R Y L A K I 2 0 2 0 0 0 2 1 1 0 2 1 0 1 1 1 1 0 2 0 0 0 17 0 1952.9268 Q92621 Q92621 902 918 NUP205 Nuclear pore complex protein Nup205 yes yes 2;3 1.75E-48 226.19 By MS/MS 1.33 0.471 2 1 3 39935000 0 0 39935000 15811 1714 16570 69138;69139;69140 58268;58269 58269 2 0 0 8666200 YLYTLVITDK KKNKDNVKFKVRCSRYLYTLVITDKEKAEK VRCSRYLYTLVITDKEKAEKLKQSLPPGLA R Y L D K E 0 0 0 1 0 0 0 0 0 1 2 1 0 0 0 0 2 0 2 1 0 0 10 0 1227.6751 P63173 P63173 41 50 RPL38 60S ribosomal protein L38 yes yes 2 0.0041356 99.802 By MS/MS By MS/MS 9.5 0.5 1 1 1 1 49800000 0 0 49800000 15812 1064 16571 69141;69142 58270;58271 58271 2 0 0 15908000 YLYTLVITDKEK KKNKDNVKFKVRCSRYLYTLVITDKEKAEK CSRYLYTLVITDKEKAEKLKQSLPPGLAVK R Y L E K A 0 0 0 1 0 0 1 0 0 1 2 2 0 0 0 0 2 0 2 1 0 0 12 1 1484.8126 P63173 P63173 41 52 RPL38 60S ribosomal protein L38 yes yes 2 0.0080716 117.67 By MS/MS 9.5 0.5 1 1 2 86043000 0 0 86043000 15813 1064 16572 69143;69144 58272 58272 1 0 0 45982000 YLYVDKNFINNPLAQADWAAK ______________________________ NFINNPLAQADWAAKKLVWVPSDKSGFEPA K Y L A K K 4 0 3 2 0 1 0 0 0 1 2 2 0 1 1 0 0 1 2 1 0 0 21 1 2453.2379 P35579 P35579 9 29 MYH9 Myosin-9 yes yes 3 2.5905E-14 128.05 By MS/MS By MS/MS 2.2 1.17 2 1 1 1 4 1 52711000 0 45043000 7668000 15814 752 16573 69145;69146;69147;69148;69149 58273;58274;58275 58273 3 0 21073000 1652200 YMACCLLYR EPANQMVKCDPRHGKYMACCLLYRGDVVPK DPRHGKYMACCLLYRGDVVPKDVNAAIATI K Y M Y R G 1 1 0 0 2 0 0 0 0 0 2 0 1 0 0 0 0 0 2 0 0 0 9 0 1248.5454 A6NHL2;P68363;P68366;Q71U36;Q9BQE3 P68363 312 320 TUBAL3;TUBA1B;TUBA4A;TUBA1A;TUBA1C Tubulin alpha chain-like 3;Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain no no 2 2.011E-05 151.17 By MS/MS By MS/MS 4.4 1.02 1 2 1 1 1 4 58948000 7985800 0 50962000 15815 1077;1515;1883;1078;13 16574 69150;69151;69152;69153;69154 58276;58277;58278 58277 3 6230300 0 7611300 YMDAWNTVSR LDNSEQKCIAMCMDRYMDAWNTVSRAYNSR MCMDRYMDAWNTVSRAYNSRLQRERANM__ R Y M S R A 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 1 1 1 1 1 0 0 10 0 1241.5499 Q9Y5L4 Q9Y5L4 73 82 TIMM13 Mitochondrial import inner membrane translocase subunit Tim13 yes yes 2 0.00039478 125.82 By MS/MS 10 0 1 1 3448200 0 3448200 0 15816 2298 16575 69155 58279 58279 1 0 17445000 0 YMDINFDFKGDPIGGHINNYLLEK NAKTNRNDNSSRFGKYMDINFDFKGDPIGG GDPIGGHINNYLLEKSRVIVQQPGERSFHS K Y M E K S 0 0 3 3 0 0 1 3 1 3 2 2 1 2 1 0 0 0 2 0 0 0 24 1 2812.3531 O94832 O94832 165 188 MYO1D Unconventional myosin-Id yes yes 4 0.0060096 40.142 By MS/MS 2 0 1 1 4871100 0 0 4871100 15817 299 16576 69156 58280 58280 1 0 0 1100800 YMDLLWR PHLVRMAKVDQNRVRYMDLLWRYYEKNRSF KVDQNRVRYMDLLWRYYEKNRSFSNAARVL R Y M W R Y 0 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 1 1 0 0 0 7 0 995.48987 O75694 O75694 1077 1083 NUP155 Nuclear pore complex protein Nup155 yes yes 2 0.0041753 129.16 By MS/MS 1.5 0.5 1 1 2 6514500 0 0 6514500 15818 281 16577 69157;69158 58281;58282 58282 2 0 0 1456600 YMEAFKPFLGIGLK AVSTLVEVLGGEFLKYMEAFKPFLGIGLKN KYMEAFKPFLGIGLKNYAEYQVCLAAVGLV K Y M L K N 1 0 0 0 0 0 1 2 0 1 2 2 1 2 1 0 0 0 1 0 0 0 14 1 1612.8687 Q14974 Q14974 646 659 KPNB1 Importin subunit beta-1 yes yes 3 0.065725 41.092 By MS/MS By MS/MS 2.33 0.471 2 1 1 2 23828000 0 5270000 18558000 15819 1325 16578 69159;69160;69161 58283;58284;58285 58283 3 0 2373200 3748500 YMEVSGNLR DQINSDHRTRAMQDRYMEVSGNLRDLYDDK RAMQDRYMEVSGNLRDLYDDKDGLRKEELN R Y M L R D 0 1 1 0 0 0 1 1 0 0 1 0 1 0 0 1 0 0 1 1 0 0 9 0 1067.507 Q12874 Q12874 50 58 SF3A3 Splicing factor 3A subunit 3 yes yes 2 0.00071907 132.57 By matching By MS/MS By MS/MS 3.75 0.433 1 3 1 1 2 48337000 6507100 8493900 33336000 15820 1206 16579 69162;69163;69164;69165 58286;58287;58288 58288 3 5076700 2818800 5882300 YMIGVTYGGDDIPLSPYR DGTYAVTYIPDKTGRYMIGVTYGGDDIPLS GVTYGGDDIPLSPYRIRATQTGDASKCLAT R Y M Y R I 0 1 0 2 0 0 0 3 0 2 1 0 1 0 2 1 1 0 3 1 0 0 18 0 2015.9663 O75369 O75369 1588 1605 FLNB Filamin-B yes yes 2 2.2578E-05 103.88 By MS/MS 1 0 1 1 1024400 0 1024400 0 15821 254 16580 69166 58289 58289 1 0 500730 0 YMIVDEGHR YIIKDKHILAKIRWKYMIVDEGHRMKNHHC AKIRWKYMIVDEGHRMKNHHCKLTQVLNTH K Y M H R M 0 1 0 1 0 0 1 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 9 0 1118.5179 P51531;P51532 P51532 877 885 SMARCA2;SMARCA4 Probable global transcription activator SNF2L2;Transcription activator BRG1 no no 2 0.0054438 96.253 By MS/MS 1 0 1 1 2942600 0 2942600 0 15822 894;893 16581 69167 58290 58290 1 0 1438300 0 YMLLPNQVWDSIIQQATK GAQTDQTVQEHLIEKYMLLPNQVWDSIIQQ LPNQVWDSIIQQATKNVDILKDPETVKQLG K Y M T K N 1 0 1 1 0 3 0 0 0 2 2 1 1 0 1 1 1 1 1 1 0 0 18 0 2147.1085 O14980 O14980 657 674 XPO1 Exportin-1 yes yes 2 2.5179E-08 141.38 By MS/MS 1.5 0.5 1 1 2 9870900 0 0 9870900 15823 158 16582 69168;69169 58291 58291 1 0 0 2218800 YMPAVTSTPTVNQHETSTSK LQLSAASVGNCPTKKYMPAVTSTPTVNQHE TSTPTVNQHETSTSKSVFEPEDSSIVDNEL K Y M S K S 1 0 1 0 0 1 1 0 1 0 0 1 1 0 2 3 5 0 1 2 0 0 20 0 2178.0263 Q15154 Q15154 788 807 PCM1 Pericentriolar material 1 protein yes yes 3 4.0422E-14 130.11 By MS/MS 1.5 0.5 1 1 2 26440000 0 0 26440000 15824 1349 16583 69170;69171 58292 58292 1 0 0 5760500 YMPPEEGPYK CKLEPGGGAEAQAVRYMPPEEGPYKVDITY AQAVRYMPPEEGPYKVDITYDGHPVPGSPF R Y M Y K V 0 0 0 0 0 0 2 1 0 0 0 1 1 0 3 0 0 0 2 0 0 0 10 0 1209.5376 Q14315 Q14315 1028 1037 FLNC Filamin-C yes yes 2 0.057574 70.856 By MS/MS 1 0 1 1 3812900 0 3812900 0 15825 1298 16584 69172 58293 58293 1 0 1863700 0 YMPQNPHIIATK CEIKINHEGEVNRARYMPQNPHIIATKTPS RARYMPQNPHIIATKTPSSDVLVFDYTKHP R Y M T K T 1 0 1 0 0 1 0 0 1 2 0 1 1 0 2 0 1 0 1 0 0 0 12 0 1411.7282 Q16576 Q16576 131 142 RBBP7 Histone-binding protein RBBP7 yes yes 3 0.027227 56.493 By MS/MS 5 0 1 1 23234000 0 23234000 0 15826 1390 16585 69173 58294 58294 1 0 5989000 0 YMSPEQISSQDYGK LKNDGKRTRSKGTLRYMSPEQISSQDYGKE RYMSPEQISSQDYGKEVDLYALGLILAELL R Y M G K E 0 0 0 1 0 2 1 1 0 1 0 1 1 0 1 3 0 0 2 0 0 0 14 0 1631.7137 P19525 P19525 454 467 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2 0.00048101 136.48 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 33872000 0 9506000 24366000 15827 609 16586 69174;69175;69176 58295;58296;58297 58296 2 0 3595900 4725900 YMTDGMLLR SIRFEDCSSAKTILKYMTDGMLLREAMNDP AKTILKYMTDGMLLREAMNDPLLERYGVII K Y M L R E 0 1 0 1 0 0 0 1 0 0 2 0 2 0 0 0 1 0 1 0 0 0 9 0 1098.5202 O43143;O60231;Q14562 O43143 235 243 DHX15;DHX16;DHX8 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15;Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16;ATP-dependent RNA helicase DHX8 no no 2 6.3533E-11 165.11 By MS/MS By MS/MS 4 1.63 2 2 2 1 1 1 4 5 88083000 0 31230000 56852000 15828 186;1304;221 16587;16588 69177;69178;69179;69180;69181;69182;69183;69184;69185 58298;58299;58300;58301;58302 58299 80 5 0 13138000 10643000 YMTQFADQNFSDFLFR VQMCEQTDNQSRLQRYMTQFADQNFSDFLF MTQFADQNFSDFLFRWYLEKGKRGKLLSQP R Y M F R W 1 1 1 2 0 2 0 0 0 0 1 0 1 4 0 1 1 0 1 0 0 0 16 0 2028.904 Q8WUM0 Q8WUM0 888 903 NUP133 Nuclear pore complex protein Nup133 yes yes 2 6.5168E-91 256.63 By MS/MS 2 0 1 1 2071100 0 0 2071100 15829 1675 16589 69186 58303 58303 1 0 0 468040 YMVENHGEDYK KKGNTLSRDLIDYVRYMVENHGEDYKAMAR DYVRYMVENHGEDYKAMARDEKNYYQDTPK R Y M Y K A 0 0 1 1 0 0 2 1 1 0 0 1 1 0 0 0 0 0 2 1 0 0 11 0 1383.5765 Q9Y3C1 Q9Y3C1 121 131 NOP16 Nucleolar protein 16 yes yes 2;3 0.00086884 115.7 By matching By MS/MS 7 0 3 1 2 43280000 541290 0 42739000 15830 2268 16590 69187;69188;69189 58304;58305 58304 2 1166600 0 7583700 YMWDSQSGR KLFGYEMAEFKVTIKYMWDSQSGRFQQMGD FKVTIKYMWDSQSGRFQQMGDDLPESASES K Y M G R F 0 1 0 1 0 1 0 1 0 0 0 0 1 0 0 2 0 1 1 0 0 0 9 0 1128.4658 Q9UKD2 Q9UKD2 206 214 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0005485 117.4 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 68157000 0 16807000 51350000 15831 2177 16591 69190;69191;69192;69193 58306;58307;58308 58308 3 0 8269500 8378300 YNANFVTFMEGK GKRTFDLEEKLHTNKYNANFVTFMEGKDFN TNKYNANFVTFMEGKDFNVEYIQRGGLRDP K Y N G K D 1 0 2 0 0 0 1 1 0 0 0 1 1 2 0 0 1 0 1 1 0 0 12 0 1419.6493 Q9Y2K7 Q9Y2K7 49 60 KDM2A Lysine-specific demethylase 2A yes yes 2 0.043465 74.841 By MS/MS 2.5 0.5 1 1 2 5301000 0 0 5301000 15832 2241 16592 69194;69195 58309 58309 1 0 0 1144400 YNEQHVPGSPFTAR SYLPVLPGDYSILVKYNEQHVPGSPFTARV KYNEQHVPGSPFTARVTGDDSMRMSHLKVG K Y N A R V 1 1 1 0 0 1 1 1 1 0 0 0 0 1 2 1 1 0 1 1 0 0 14 0 1601.7587 P21333 P21333 1938 1951 FLNA Filamin-A yes yes 2;3 0.00062903 94.532 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 83274000 0 34007000 49267000 15833 623 16593 69196;69197;69198;69199 58310;58311;58312 58312 3 0 16622000 10659000 YNFPVEVEVPMER KNLLIFENLIDLKRRYNFPVEVEVPMERKK RRYNFPVEVEVPMERKKKYIEIRKEAREAA R Y N E R K 0 1 1 0 0 0 3 0 0 0 0 0 1 1 2 0 0 0 1 3 0 0 13 0 1607.7654 P78527 P78527 1988 2000 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.00046023 121.9 By MS/MS 1 0 1 1 13070000 0 0 13070000 15834 1089 16594 69200 58313 58313 1 0 0 2816100 YNGVFQECCQAEDK HPYFYAPELLYYANKYNGVFQECCQAEDKG KYNGVFQECCQAEDKGACLLPKIETMREKV K Y N D K G 1 0 1 1 2 2 2 1 0 0 0 1 0 1 0 0 0 0 1 1 0 0 14 0 1746.6978 CON__P02769 CON__P02769 184 197 yes yes 2 2.2472E-05 162.21 By MS/MS 4.5 0.5 1 1 2 19455000 19455000 0 0 + 15835 45 16595 69201;69202 58314 58314 1 15237000 0 0 YNILGTNAIMDK TTWAIKHAASNPSKKYNILGTNAIMDKMRV SKKYNILGTNAIMDKMRVMGLRRQRNYAGR K Y N D K M 1 0 2 1 0 0 0 1 0 2 1 1 1 0 0 0 1 0 1 0 0 0 12 0 1351.6806 Q9BUJ2 Q9BUJ2 450 461 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 yes yes 2 0.0010576 117.52 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 67694000 0 23395000 44299000 15836 1907 16596 69203;69204;69205;69206;69207 58315;58316;58317;58318;58319 58316 5 0 9641200 9350000 YNILGTNTIMDK KTTWVTKHAAENPGKYNILGTNTIMDKMMV PGKYNILGTNTIMDKMMVAGFKKQMADTGK K Y N D K M 0 0 2 1 0 0 0 1 0 2 1 1 1 0 0 0 2 0 1 0 0 0 12 0 1381.6912 Q00839 Q00839 525 536 HNRNPU Heterogeneous nuclear ribonucleoprotein U yes yes 2 5.5234E-12 177.78 By MS/MS By MS/MS By MS/MS 3.23 2.02 4 7 3 2 3 2 1 2 12 8 896580000 29130000 381090000 486360000 15837 1127 16597;16598 69208;69209;69210;69211;69212;69213;69214;69215;69216;69217;69218;69219;69220;69221;69222;69223;69224;69225;69226;69227;69228;69229 58320;58321;58322;58323;58324;58325;58326;58327;58328;58329;58330;58331;58332;58333;58334;58335;58336;58337 58322 537 17 34898000 165150000 104910000 YNIMLVR TGGKVADMALHYANKYNIMLVRLNSKWDLR MALHYANKYNIMLVRLNSKWDLRRLCKTVG K Y N V R L 0 1 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 1 1 0 0 7 0 907.49496 P50990 P50990 308 314 CCT8 T-complex protein 1 subunit theta yes yes 2 0.0072219 124.86 By matching By MS/MS By MS/MS 4 0 3 1 1 1 9386800 1558900 3500400 4327500 15838 885 16599 69230;69231;69232 58338;58339 58338 2 1216200 1161700 706820 YNIPHGPVVGSTR YADLSDTELTTLLRRYNIPHGPVVGSTRRL RRYNIPHGPVVGSTRRLYEKKIFEYETQRR R Y N T R R 0 1 1 0 0 0 0 2 1 1 0 0 0 0 2 1 1 0 1 2 0 0 13 0 1395.7259 P50402 P50402 19 31 EMD Emerin yes yes 2;3 9.4696E-06 158.01 By matching By MS/MS 6 0.577 1 4 1 2 4 148850000 0 19557000 129290000 15839 878 16600 69233;69234;69235;69236;69237;69238 58340;58341;58342;58343 58341 4 0 6769900 19392000 YNLGLDLR TMERSARQIMRTAMKYNLGLDLRTAAYVNA IMRTAMKYNLGLDLRTAAYVNAIEKVFKVY K Y N L R T 0 1 1 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 1 0 0 0 8 0 962.51853 P00367;P49448 P00367 528 535 GLUD1;GLUD2 Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial yes no 2 0.023612 96.19 By MS/MS 4 0 1 1 0 0 0 0 15840 357 16601 69239 58344 58344 1 0 0 0 YNLIVVGR HFQHLTPIKAAWHPRYNLIVVGRYPDPNFK KAAWHPRYNLIVVGRYPDPNFKSCTPYELR R Y N G R Y 0 1 1 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 2 0 0 8 0 932.54435 Q92466 Q92466 348 355 DDB2 DNA damage-binding protein 2 yes yes 2 0.0010414 121.29 By MS/MS 5 0 1 1 5660800 0 0 5660800 15841 1704 16602 69240 58345 58345 1 0 0 789580 YNLKPIPLKR VPVKKNASTVVVSDKYNLKPIPLKRQSNVA VVSDKYNLKPIPLKRQSNVAAPGDATPPAE K Y N K R Q 0 1 1 0 0 0 0 0 0 1 2 2 0 0 2 0 0 0 1 0 0 0 10 2 1240.7656 Q96QC0 Q96QC0 236 245 PPP1R10 Serine/threonine-protein phosphatase 1 regulatory subunit 10 yes yes 3 0.054957 55.235 By MS/MS 1.5 0.5 1 1 2 4292800 0 0 4292800 15842 1823 16603 69241;69242 58346 58346 1 0 0 960170 YNNPAMLHNIDQEMLK NQKDGMVSFHDNPEKYNNPAMLHNIDQEML NNPAMLHNIDQEMLKCIELDERLKAMDQEI K Y N L K C 1 0 3 1 0 1 1 0 1 1 2 1 2 0 1 0 0 0 1 0 0 0 16 0 1929.9077 Q9UNS2 Q9UNS2 367 382 COPS3 COP9 signalosome complex subunit 3 yes yes 2 0.012817 57.348 By MS/MS By MS/MS 5.64 2.77 1 1 1 1 1 1 2 1 1 1 6 5 217920000 109790000 0 108130000 15843 2211 16604 69243;69244;69245;69246;69247;69248;69249;69250;69251;69252;69253 58347;58348;58349;58350;58351 58347 707;708 5 91485000 0 26961000 YNPDSGLEVLAVQR GIKYVVDTGMVKAKKYNPDSGLEVLAVQRV KYNPDSGLEVLAVQRVSKTQAWQRTGRAGR K Y N Q R V 1 1 1 1 0 1 1 1 0 0 2 0 0 0 1 1 0 0 1 2 0 0 14 0 1559.7944 Q9H6R0 Q9H6R0 380 393 DHX33 Putative ATP-dependent RNA helicase DHX33 yes yes 2 0.036809 67.153 By MS/MS 3 0 1 1 1947000 0 1947000 0 15844 1987 16605 69254 58352 58352 1 0 830000 0 YNPENLATLER QMRANVGKLLKGIDRYNPENLATLERYVET GIDRYNPENLATLERYVETQAKENAYDLEA R Y N E R Y 1 1 2 0 0 0 2 0 0 0 2 0 0 0 1 0 1 0 1 0 0 0 11 0 1318.6517 Q9UBQ5 Q9UBQ5 21 31 EIF3K Eukaryotic translation initiation factor 3 subunit K yes yes 2 0.026181 80.755 By matching By MS/MS 7 0 2 1 1 12620000 0 2578500 10042000 15845 2133 16606 69255;69256 58353 58353 1 0 1480600 1781800 YNPPDHDVVAMAR EFAADVRLMFSNCYKYNPPDHDVVAMARKL YKYNPPDHDVVAMARKLQDVFEFRYAKMPD K Y N A R K 2 1 1 2 0 0 0 0 1 0 0 0 1 0 2 0 0 0 1 2 0 0 13 0 1483.6878 P25440 P25440 428 440 BRD2 Bromodomain-containing protein 2 yes yes 2;3 0.007185 94.297 By MS/MS By MS/MS 2.71 0.7 3 3 1 3 4 74040000 0 9058600 64981000 15846 658 16607 69257;69258;69259;69260;69261;69262;69263 58354;58355;58356;58357;58358 58358 4 0 3787500 14056000 YNPPDHEVVAMAR GFAADVRLMFSNCYKYNPPDHEVVAMARKL YKYNPPDHEVVAMARKLQDVFEMRFAKMPD K Y N A R K 2 1 1 1 0 0 1 0 1 0 0 0 1 0 2 0 0 0 1 2 0 0 13 0 1497.7034 Q15059;O60885 Q15059 390 402 BRD3;BRD4 Bromodomain-containing protein 3;Bromodomain-containing protein 4 no no 2;3 0.0012439 101.66 By MS/MS By MS/MS 2.12 0.781 2 3 3 2 6 120610000 0 12838000 107770000 15847 1342;239 16608 69264;69265;69266;69267;69268;69269;69270;69271 58359;58360;58361;58362;58363;58364;58365;58366 58363 8 0 5683700 23100000 YNPTWHCIVGR EKDIAAYIKKEFDKKYNPTWHCIVGRNFGS FDKKYNPTWHCIVGRNFGSYVTHETKHFIY K Y N G R N 0 1 1 0 1 0 0 1 1 1 0 0 0 0 1 0 1 1 1 1 0 0 11 0 1401.6612 Q96FJ2;P63167 Q96FJ2 50 60 DYNLL2;DYNLL1 Dynein light chain 2, cytoplasmic;Dynein light chain 1, cytoplasmic yes no 2;3 0.00029601 133.23 By MS/MS By MS/MS 9.5 0.5 2 2 1 3 59084000 0 3746500 55338000 15848 1062 16609 69272;69273;69274;69275 58367;58368;58369;58370 58369 4 0 18954000 29913000 YNPYTTRPNR GDVAMSDAQDGPRVRYNPYTTRPNRRGDTW GPRVRYNPYTTRPNRRGDTWHDRDRIHVTV R Y N N R R 0 2 2 0 0 0 0 0 0 0 0 0 0 0 2 0 2 0 2 0 0 0 10 1 1280.6262 Q9UBU9 Q9UBU9 72 81 NXF1 Nuclear RNA export factor 1 yes yes 3 0.0013373 96.143 By MS/MS By MS/MS 3.33 0.471 2 1 1 2 9541300 0 2613600 6927700 15849 2136 16610 69276;69277;69278 58371;58372 58371 2 0 1114200 1329300 YNTIETFNELFDAHK SSTDLGRTASHYYIKYNTIETFNELFDAHK YNTIETFNELFDAHKTEGDIFAIVSKAEEF K Y N H K T 1 0 2 1 0 0 2 0 1 1 1 1 0 2 0 0 2 0 1 0 0 0 15 0 1840.8632 Q8N3C0 Q8N3C0 992 1006 ASCC3 Activating signal cointegrator 1 complex subunit 3 yes yes 3 0.00015574 98.943 By MS/MS 1.5 0.5 1 1 2 2316000 0 2316000 0 15850 1602 16611 69279;69280 58373 58373 1 0 1116400 0 YNVLGAETVLNQMR TQWALKYAKENPEKRYNVLGAETVLNQMRM RYNVLGAETVLNQMRMKGLEEPEMDPKSRD R Y N M R M 1 1 2 0 0 1 1 1 0 0 2 0 1 0 0 0 1 0 1 2 0 0 14 0 1606.8137 Q1KMD3 Q1KMD3 481 494 HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 yes yes 2;3 5.5804E-73 247.08 By matching By MS/MS By MS/MS 2.46 0.746 1 6 5 1 1 5 7 176840000 607920 81602000 94629000 15851 1404 16612;16613 69281;69282;69283;69284;69285;69286;69287;69288;69289;69290;69291;69292;69293 58374;58375;58376;58377;58378;58379;58380;58381;58382;58383 58380 627 10 607920 36360000 20413000 YNVPLNR SEISENTDASGKIEKYNVPLNRLKMMFEKG DASGKIEKYNVPLNRLKMMFEKGEPTQTKI K Y N N R L 0 1 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 7 0 874.4661 Q9UHB6 Q9UHB6 190 196 LIMA1 LIM domain and actin-binding protein 1 yes yes 2 0.045407 78.445 By MS/MS 2.5 0.5 1 1 2 12251000 0 12251000 0 15852 2150 16614 69294;69295 58384 58384 1 0 5360600 0 YNVYGYTGQGVFSNVVR EGYYRVNIGEVLDKRYNVYGYTGQGVFSNV VYGYTGQGVFSNVVRARDNARANQEVAVKI R Y N V R A 0 1 2 0 0 1 0 3 0 0 0 0 0 1 0 1 1 0 3 4 0 0 17 0 1921.9323 Q13523 Q13523 687 703 PRPF4B Serine/threonine-protein kinase PRP4 homolog yes yes 2 1.6189E-92 256.96 By matching By MS/MS By MS/MS 2 0 3 1 1 1 20431000 1295300 9764500 9370700 15853 1255 16615 69296;69297;69298 58385;58386 58385 2 1560700 4397100 2117600 YNYLKPR RYSALFLGVAYGATRYNYLKPRAEEERRIA GVAYGATRYNYLKPRAEEERRIAAEEKKKQ R Y N P R A 0 1 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 2 0 0 0 7 1 952.51305 P56385 P56385 30 36 ATP5I ATP synthase subunit e, mitochondrial yes yes 2 0.045903 126.68 By MS/MS 10 0 1 1 2782400 0 0 2782400 15854 950 16616 69299 58387 58387 1 0 0 6085400 YPASTVQILGAEK ARLIAHAGSLTNLAKYPASTVQILGAEKAL AKYPASTVQILGAEKALFRALKTRGNTPKY K Y P E K A 2 0 0 0 0 1 1 1 0 1 1 1 0 0 1 1 1 0 1 1 0 0 13 0 1375.7347 O00567 O00567 321 333 NOP56 Nucleolar protein 56 yes yes 2 9.0082E-34 208.17 By MS/MS By MS/MS By MS/MS 2.89 1.29 2 1 3 2 1 1 3 5 506550000 14694000 168140000 323710000 15855 130 16617 69300;69301;69302;69303;69304;69305;69306;69307;69308 58388;58389;58390;58391;58392;58393;58394;58395 58390 7 16953000 67352000 61081000 YPDPLIK KGIPHLVTHDARTIRYPDPLIKVNDTIQID THDARTIRYPDPLIKVNDTIQIDLETGKIT R Y P I K V 0 0 0 1 0 0 0 0 0 1 1 1 0 0 2 0 0 0 1 0 0 0 7 0 844.46945 P62701;Q8TD47 P62701 149 155 RPS4X;RPS4Y2 40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2 yes no 2 0.032281 90.706 By matching By MS/MS 6.33 0.471 2 1 1 2 117220000 0 21764000 95453000 15856 1029 16618 69309;69310;69311 58396 58396 1 0 7533800 14990000 YPEAQSVASDILR RFKILKAECLAMLGRYPEAQSVASDILRMD GRYPEAQSVASDILRMDSTNADALYVRGLC R Y P L R M 2 1 0 1 0 1 1 0 0 1 1 0 0 0 1 2 0 0 1 1 0 0 13 0 1447.7307 Q99615 Q99615 192 204 DNAJC7 DnaJ homolog subfamily C member 7 yes yes 2 0.0019383 108.9 By MS/MS 4 0 1 1 5222300 0 5222300 0 15857 1854 16619 69312 58397;58398 58398 2 0 1733100 0 YPEDKITPENLPQILLQLK ASFGLSARDLDELSRYPEDKITPENLPQIL KITPENLPQILLQLKRRRTEEGPTLSYGRD R Y P L K R 0 0 1 1 0 2 2 0 0 2 4 2 0 0 3 0 1 0 1 0 0 0 19 1 2251.2464 P43243 P43243 128 146 MATR3 Matrin-3 yes yes 3 3.8599E-09 112.01 By MS/MS By MS/MS 1.67 0.471 1 2 1 2 14811000 0 8595200 6215400 15858 812 16620 69313;69314;69315 58399;58400;58401;58402 58402 4 0 3870500 1366100 YPEDKITPENLPQILLQLKR ASFGLSARDLDELSRYPEDKITPENLPQIL ITPENLPQILLQLKRRRTEEGPTLSYGRDG R Y P K R R 0 1 1 1 0 2 2 0 0 2 4 2 0 0 3 0 1 0 1 0 0 0 20 2 2407.3475 P43243 P43243 128 147 MATR3 Matrin-3 yes yes 4 0.0053775 52.784 By MS/MS 2 0 1 1 4313700 0 4313700 0 15859 812 16621 69316 58403 58403 1 0 1942500 0 YPEETLSLMTK EARLKFPRLLQIIERYPEETLSLMTKEISS IIERYPEETLSLMTKEISSVPCWQFISWIS R Y P T K E 0 0 0 0 0 0 2 0 0 0 2 1 1 0 1 1 2 0 1 0 0 0 11 0 1310.6428 P78527 P78527 3475 3485 PRKDC DNA-dependent protein kinase catalytic subunit yes yes 2 0.049681 73.885 By MS/MS 1 0 1 1 10395000 0 10395000 0 15860 1089 16622 69317 58404 58404 1 0 5081000 0 YPENFFLLR QSLETICLLLAYKIKYPENFFLLRGNHECA LAYKIKYPENFFLLRGNHECASINRIYGFY K Y P L R G 0 1 1 0 0 0 1 0 0 0 2 0 0 2 1 0 0 0 1 0 0 0 9 0 1197.6182 P62140;P62136;P36873 P62136 114 122 PPP1CB;PPP1CA;PPP1CC Serine/threonine-protein phosphatase PP1-beta catalytic subunit;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit no no 2 6.8356E-12 173.59 By MS/MS By MS/MS 6 0.707 1 2 1 1 3 49019000 0 3698700 45320000 15861 1006;1007;763 16623 69318;69319;69320;69321 58405;58406;58407 58407 3 0 1280400 6853800 YPESLRPAFPR IRKKAVLIMYKVFLKYPESLRPAFPRLKEK VFLKYPESLRPAFPRLKEKLEDPDPGVQSA K Y P P R L 1 2 0 0 0 0 1 0 0 0 1 0 0 1 3 1 0 0 1 0 0 0 11 1 1331.6986 O14617 O14617 177 187 AP3D1 AP-3 complex subunit delta-1 yes yes 3 0.021936 65.056 By MS/MS 2 0.816 1 1 1 3 26062000 0 0 26062000 15862 139 16624 69322;69323;69324 58408 58408 1 0 0 5567100 YPFILPHQQVDK QREGPFYPTLRLLHKYPFILPHQQVDKGAI LHKYPFILPHQQVDKGAIKFVLSGANIMCP K Y P D K G 0 0 0 1 0 2 0 0 1 1 1 1 0 1 2 0 0 0 1 1 0 0 12 0 1483.7823 Q9ULC4 Q9ULC4 88 99 MCTS1 Malignant T-cell-amplified sequence 1 yes yes 2;3 5.3865E-06 160.75 By matching By MS/MS 7.25 0.433 3 1 1 3 50969000 0 6682900 44287000 15863 2188 16625 69325;69326;69327;69328 58409;58410 58410 2 0 3837400 7692400 YPHIKDGEDLKDHSTESK RSRLRSPPEALVQGRYPHIKDGEDLKDHST IKDGEDLKDHSTESKKMENCLGESRHEVEK R Y P S K K 0 0 0 3 0 0 2 1 2 1 1 3 0 0 1 2 1 0 1 0 0 0 18 2 2097.9967 Q9UHB6 Q9UHB6 142 159 LIMA1 LIM domain and actin-binding protein 1 yes yes 4 0.066988 31.883 By MS/MS 1.5 0.5 1 1 2 4572400 0 0 4572400 15864 2150 16626 69329;69330 58411 58411 1 0 0 1021200 YPIEHGIITNWDDMEK VGDEAQSKRGILTLKYPIEHGIITNWDDME PIEHGIITNWDDMEKIWHHTFYNELRVAPE K Y P E K I 0 0 1 2 0 0 2 1 1 3 0 1 1 0 1 0 1 1 1 0 0 0 16 0 1959.9037 P68032;P63267;P68133;P62736 P68032 71 86 ACTC1;ACTG2;ACTA1;ACTA2 Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle yes no 2;3 1.2318E-35 211.38 By MS/MS By MS/MS By MS/MS 4.71 2.08 3 4 4 3 12 6 2 2 2 4 9 25 2143600000 14291000 505920000 1623400000 15865 1075 16627;16628 69331;69332;69333;69334;69335;69336;69337;69338;69339;69340;69341;69342;69343;69344;69345;69346;69347;69348;69349;69350;69351;69352;69353;69354;69355;69356;69357;69358;69359;69360;69361;69362;69363;69364;69365;69366;69367;69368 58412;58413;58414;58415;58416;58417;58418;58419;58420;58421;58422;58423;58424;58425;58426;58427;58428;58429;58430;58431;58432;58433;58434;58435;58436;58437;58438;58439;58440;58441;58442;58443;58444;58445 58412 517 34 11639000 140230000 247950000 YPIEHGIVTNWDDMEK VGDEAQSKRGILTLKYPIEHGIVTNWDDME PIEHGIVTNWDDMEKIWHHTFYNELRVAPE K Y P E K I 0 0 1 2 0 0 2 1 1 2 0 1 1 0 1 0 1 1 1 1 0 0 16 0 1945.888 P60709;P63261 P60709 69 84 ACTB;ACTG1 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed no no 2;3 1.0801E-174 302.28 By MS/MS 4.67 0.471 1 2 3 63538000 0 0 63538000 15866 966;1069 16629 69369;69370;69371 58446;58447 58447 2 0 0 8923200 YPIFFFGTHETAFLGPK IDDIADGAVKPPPNKYPIFFFGTHETAFLG IFFFGTHETAFLGPKDLFPYDKCKDKYGKP K Y P P K D 1 0 0 0 0 0 1 2 1 1 1 1 0 4 2 0 2 0 1 0 0 0 17 0 1970.9931 Q7Z4V5;Q9Y3E1 Q7Z4V5 40 56 HDGFRP2;HDGFRP3 Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor-related protein 3 no no 2;3 4.9503E-05 98.508 By MS/MS 5.12 1.9 1 1 1 1 2 1 1 8 116350000 0 0 116350000 15867 1533;2273 16630 69372;69373;69374;69375;69376;69377;69378;69379 58448;58449;58450;58451;58452;58453 58448 6 0 0 21228000 YPLVFSPQMVGFYIK NKAAPPTAGSMAIEKYPLVFSPQMVGFYIK YPLVFSPQMVGFYIKQKKTRSKGRNEQFPV K Y P I K Q 0 0 0 0 0 1 0 1 0 1 1 1 1 2 2 1 0 0 2 2 0 0 15 0 1787.9321 O75691 O75691 467 481 UTP20 Small subunit processome component 20 homolog yes yes 2 0.019824 68.355 By MS/MS 1 0 1 1 4344500 0 0 4344500 15868 280 16631 69380 58454 58454 1 0 0 936080 YPMAVGLNK ______________________________ ______________________________ R Y P N K G 1 0 1 0 0 0 0 1 0 0 1 1 1 0 1 0 0 0 1 1 0 0 9 0 991.51609 Q9Y3U8 Q9Y3U8 5 13 RPL36 60S ribosomal protein L36 yes yes 2 9.6185E-05 143.02 By MS/MS By MS/MS 8 0.816 2 2 2 3 3 316090000 0 190030000 126060000 15869 2278 16632 69381;69382;69383;69384;69385;69386 58455;58456;58457;58458;58459;58460 58456 6 0 92775000 27128000 YPNIELSYEVVDKDSIR LTDSQIADVARFCNRYPNIELSYEVVDKDS NIELSYEVVDKDSIRSGGPVVVLVQLEREE R Y P I R S 0 1 1 2 0 0 2 0 0 2 1 1 0 0 1 2 0 0 2 2 0 0 17 1 2039.0211 O75643 O75643 2014 2030 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 3 2.5251E-06 110.74 By MS/MS 1 0 1 1 9941300 0 0 9941300 15870 277 16633 69387 58461 58461 1 0 0 2142000 YPPFPSDYLALQLPEPSPLRPK SGVPSPYLSSLASSRYPPFPSDYLALQLPE YLALQLPEPSPLRPKREKRPRLPRKLKMAV R Y P P K R 1 1 0 1 0 1 1 0 0 0 4 1 0 1 7 2 0 0 2 0 0 0 22 1 2524.3366 Q8NBZ0 Q8NBZ0 138 159 INO80E INO80 complex subunit E yes yes 3 0.0055317 45.992 By matching By MS/MS 6.33 0.471 2 1 1 2 7768100 0 1655200 6112800 15871 1629 16634 69388;69389;69390 58462 58462 1 0 572980 934540 YPPPTELLDLQPLPVSALR TQLPVSFRHLILPEKYPPPTELLDLQPLPV TELLDLQPLPVSALRNSAFESLYQDKFPFF K Y P L R N 1 1 0 1 0 1 1 0 0 0 5 0 0 0 5 1 1 0 1 1 0 0 19 0 2118.1725 O75643 O75643 1295 1313 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2;3 1.0813E-16 175.6 By MS/MS By MS/MS 1.25 0.433 6 2 4 4 82125000 0 29121000 53004000 15872 277 16635 69391;69392;69393;69394;69395;69396;69397;69398 58463;58464;58465;58466;58467;58468;58469;58470;58471;58472;58473;58474 58474 12 0 13989000 11421000 YPQLLPGIR ILDDGGDLTNLIHTKYPQLLPGIRGISEET NLIHTKYPQLLPGIRGISEETTTGVHNLYK K Y P I R G 0 1 0 0 0 1 0 1 0 1 2 0 0 0 2 0 0 0 1 0 0 0 9 0 1055.6128 P23526 P23526 143 151 AHCY Adenosylhomocysteinase yes yes 2 0.0023814 104.21 By MS/MS 5 0 1 1 3477600 0 3477600 0 15873 643 16636 69399 58475 58475 1 0 896410 0 YPSLELER SGASVVAIRKYIIHKYPSLELERRGYLLKQ RKYIIHKYPSLELERRGYLLKQALKRELNR K Y P E R R 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 1 0 0 1 0 0 0 8 0 1005.5131 Q5SSJ5 Q5SSJ5 191 198 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2 0.00021081 138.9 By MS/MS By MS/MS 2.67 0.471 1 2 1 2 34075000 0 0 34075000 15874 1445 16637 69400;69401;69402 58476;58477;58478 58478 3 0 0 6721700 YPSPFFVFGEK HKSSVNCPFSSQDMKYPSPFFVFGEKIRTR QDMKYPSPFFVFGEKIRTRAISAKGMTLVT K Y P E K I 0 0 0 0 0 0 1 1 0 0 0 1 0 3 2 1 0 0 1 1 0 0 11 0 1316.6441 Q08211 Q08211 1038 1048 DHX9 ATP-dependent RNA helicase A yes yes 2 6.1187E-07 154.01 By MS/MS By MS/MS By MS/MS 3 1.79 2 3 2 1 1 1 1 3 6 148670000 2696800 57484000 88485000 15875 1182 16638 69403;69404;69405;69406;69407;69408;69409;69410;69411;69412 58479;58480;58481;58482;58483;58484;58485;58486;58487;58488;58489;58490;58491 58483 13 3249400 26146000 19151000 YPSYGLNYYQQK DKIAKYIPIQYVLSRYPSYGLNYYQQKPVA LSRYPSYGLNYYQQKPVALINNQFLPYPYY R Y P Q K P 0 0 1 0 0 2 0 1 0 0 1 1 0 0 1 1 0 0 4 0 0 0 12 0 1522.7092 CON__P02668 CON__P02668 35 46 yes yes 2 2.1298E-148 290.58 By MS/MS 6.6 3.14 1 1 1 1 1 5 44893000 44893000 0 0 + 15876 42 16639 69413;69414;69415;69416;69417 58492;58493;58494;58495 58493 4 49033000 0 0 YPTFIDALR DNKPNYKLDHIIKERYPTFIDALRDLDDAL HIIKERYPTFIDALRDLDDALSMCFLFSTF R Y P L R D 1 1 0 1 0 0 0 0 0 1 1 0 0 1 1 0 1 0 1 0 0 0 9 0 1094.576 O00541 O00541 124 132 PES1 Pescadillo homolog yes yes 2 0.0074545 92.653 By matching By MS/MS 2 0.816 1 1 1 2 1 23365000 2307200 0 21058000 15877 127 16640 69418;69419;69420 58496 58496 1 2407200 0 4084300 YPVWLWK ______________________________ ______________________________ K Y P W K R 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 2 1 1 0 0 7 0 990.53272 Q13084 Q13084 6 12 MRPL28 39S ribosomal protein L28, mitochondrial yes yes 2 0.072036 72.021 By MS/MS 6 0 1 1 2932800 0 0 2932800 15878 1218 16641 69421 58497 58497 1 0 0 438780 YPYVGILHVR VVQDHYVDWEQDMERYPYVGILHVRDSLIP QDMERYPYVGILHVRDSLIPPQSRRRMKRV R Y P V R D 0 1 0 0 0 0 0 1 1 1 1 0 0 0 1 0 0 0 2 2 0 0 10 0 1215.6764 Q8NC56 Q8NC56 436 445 LEMD2 LEM domain-containing protein 2 yes yes 2;3 4.8885E-05 140.98 By MS/MS By MS/MS 3.75 0.433 1 3 1 3 26815000 0 1846300 24969000 15879 1631 16642 69422;69423;69424;69425 58498;58499;58500;58501 58500 4 0 612730 4122000 YQAVTATLEEK KFAYLGRLAHEVGWKYQAVTATLEEKRKEK VGWKYQAVTATLEEKRKEKAKIHYRKKKQL K Y Q E K R 2 0 0 0 0 1 2 0 0 0 1 1 0 0 0 0 2 0 1 1 0 0 11 0 1251.6347 P40429;Q6NVV1 P40429 149 159 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 3.5013E-05 147.4 By matching By MS/MS By MS/MS 5.43 2.92 2 1 1 1 2 2 2 1 2 1 5 8 609060000 2258300 122950000 483850000 15880 784 16643 69426;69427;69428;69429;69430;69431;69432;69433;69434;69435;69436;69437;69438;69439 58502;58503;58504;58505;58506;58507;58508;58509;58510;58511;58512;58513;58514 58502 13 2258300 77107000 104030000 YQAVTATLEEKR KFAYLGRLAHEVGWKYQAVTATLEEKRKEK GWKYQAVTATLEEKRKEKAKIHYRKKKQLM K Y Q K R K 2 1 0 0 0 1 2 0 0 0 1 1 0 0 0 0 2 0 1 1 0 0 12 1 1407.7358 P40429;Q6NVV1 P40429 149 160 RPL13A;RPL13AP3 60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3 yes no 2 0.0063148 93.096 By MS/MS 7 0 1 1 0 0 0 0 15881 784 16644 69440 58515 58515 1 0 0 0 YQDIIHSIHLAR QGIRESQLKERLEKRYQDIIHSIHLARKPN EKRYQDIIHSIHLARKPNLGLKSCDGNQEL R Y Q A R K 1 1 0 1 0 1 0 0 2 3 1 0 0 0 0 1 0 0 1 0 0 0 12 0 1464.7837 Q9UIG0 Q9UIG0 1025 1036 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 3 0.019782 62.14 By MS/MS 1.5 0.5 1 1 2 52405000 0 0 52405000 15882 2164 16645 69441;69442 58516;58517 58516 2 0 0 11441000 YQDTPGVEHIPVVQIDLSVPLKVPGLPMSDQYVK NNPFYIKSSPSPQKRYQDTPGVEHIPVVQI PLKVPGLPMSDQYVKLEEERRHRQKLEKDK R Y Q V K L 0 0 0 3 0 3 1 2 1 2 3 2 1 0 5 2 1 0 2 6 0 0 34 1 3760.975 O14617 O14617 693 726 AP3D1 AP-3 complex subunit delta-1 yes yes 4 0.0054881 31.137 By MS/MS 2 0 1 1 1037700 0 0 1037700 15883 139 16646 69443 58518 58518 1 0 0 234510 YQEAQEEIMK VIENMNKEKAFLFEKYQEAQEEIMKLKDTL FLFEKYQEAQEEIMKLKDTLKSQMTQEASD K Y Q M K L 1 0 0 0 0 2 3 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 10 0 1267.5755 Q9P0K7 Q9P0K7 601 610 RAI14 Ankycorbin yes yes 2 0.021107 86.744 By MS/MS 2 0 1 1 0 0 0 0 15884 2115 16647 69444 58519 58519 1 0 0 0 YQELINDIAR LKKLTELGTVDPKNKYQELINDIARDIRNQ DPKNKYQELINDIARDIRNQRRYRQRRKAE K Y Q A R D 1 1 1 1 0 1 1 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 10 0 1233.6354 P46940 P46940 1478 1487 IQGAP1 Ras GTPase-activating-like protein IQGAP1 yes yes 2 0.0015995 108.57 By MS/MS By MS/MS 1.8 0.748 2 2 1 2 3 38699000 0 13326000 25374000 15885 835 16648 69445;69446;69447;69448;69449 58520;58521;58522;58523 58521 4 0 6000700 5531500 YQELPNSGPPHDR EELNTYRQKQGVVLKYQELPNSGPPHDRRF LKYQELPNSGPPHDRRFTFQVIIDGREFPE K Y Q D R R 0 1 1 1 0 1 1 1 1 0 1 0 0 0 3 1 0 0 1 0 0 0 13 0 1508.7008 P19525 P19525 27 39 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 2;3 0.00032553 139.86 By MS/MS 3 0 2 2 21273000 0 0 21273000 15886 609 16649 69450;69451 58524;58525 58525 2 0 0 4125900 YQELPNSGPPHDRR EELNTYRQKQGVVLKYQELPNSGPPHDRRF KYQELPNSGPPHDRRFTFQVIIDGREFPEG K Y Q R R F 0 2 1 1 0 1 1 1 1 0 1 0 0 0 3 1 0 0 1 0 0 0 14 1 1664.8019 P19525 P19525 27 40 EIF2AK2 Interferon-induced, double-stranded RNA-activated protein kinase yes yes 3 0.0070012 69.716 By MS/MS 3.5 0.5 1 1 2 2577600 0 2577600 0 15887 609 16650 69452;69453 58526;58527 58526 1 0 1031900 0 YQELQITAGR AQRSKDEAEALYQTKYQELQITAGRHGDDL LYQTKYQELQITAGRHGDDLKNSKMEIAEL K Y Q G R H 1 1 0 0 0 2 1 1 0 1 1 0 0 0 0 0 1 0 1 0 0 0 10 0 1177.6091 CON__Q7Z794;Q7Z794 CON__Q7Z794 361 370 KRT77 Keratin, type II cytoskeletal 1b yes no 2 6.2443E-07 156.62 By MS/MS By matching 6 3 1 1 1 1 1 1 1 1 7 1 83809000 76231000 0 7578000 + 15888 95 16651 69454;69455;69456;69457;69458;69459;69460;69461 58528;58529;58530;58531;58532;58533 58533 6 82427000 0 1712500 YQEVTNNLEFAK KGERLNQDQLDAVSKYQEVTNNLEFAKELQ VSKYQEVTNNLEFAKELQRSFMALSQDIQK K Y Q A K E 1 0 2 0 0 1 2 0 0 0 1 1 0 1 0 0 1 0 1 1 0 0 12 0 1454.7042 Q14444 Q14444 99 110 CAPRIN1 Caprin-1 yes yes 2 6.4297E-08 166.19 By matching By MS/MS By MS/MS 3.78 1.75 3 2 1 1 1 1 1 6 2 220120000 4105900 109240000 106780000 15889 1301 16652 69462;69463;69464;69465;69466;69467;69468;69469;69470 58534;58535;58536;58537;58538 58534 5 4947100 43827000 22003000 YQGDGIVEDEEETMENNEEKKDR NFKKSGSSPKWTHDKYQGDGIVEDEEETME DEEETMENNEEKKDRRKEEKE_________ K Y Q D R R 0 1 2 3 0 1 7 2 0 1 0 2 1 0 0 0 1 0 1 1 0 0 23 2 2756.1719 Q9NYF8 Q9NYF8 892 914 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 4 3.8101E-20 129.84 By MS/MS 2 0 1 1 8488500 0 0 8488500 15890 2097 16653 69471 58539 58539 1 0 0 1918200 YQGTILSIDDNLQR KNKVTKEQYNMLGGKYQGTILSIDDNLQRT KYQGTILSIDDNLQRTCTGTININIQSFGN K Y Q Q R T 0 1 1 2 0 2 0 1 0 2 2 0 0 0 0 1 1 0 1 0 0 0 14 0 1634.8264 Q02413 Q02413 460 473 DSG1 Desmoglein-1 yes yes 2 1.5673E-11 180.88 By MS/MS By matching By matching 6.1 3.18 2 1 1 1 1 1 1 2 7 2 1 98363000 85177000 3421200 9764600 15891 1146 16654 69472;69473;69474;69475;69476;69477;69478;69479;69480;69481 58540;58541;58542;58543;58544;58545;58546 58542 7 73358000 6083500 2103900 YQGVNLYIK LKRKFEQLKQERISRYQGVNLYIKNLDDTI QERISRYQGVNLYIKNLDDTIDDEKLRKEF R Y Q I K N 0 0 1 0 0 1 0 1 0 1 1 1 0 0 0 0 0 0 2 1 0 0 9 0 1096.5917 Q13310 Q13310 291 299 PABPC4 Polyadenylate-binding protein 4 yes yes 2 0.00073214 113.5 By MS/MS By matching 5.86 2.1 1 1 1 2 1 1 4 3 132630000 0 119770000 12860000 15892 1237 16655 69482;69483;69484;69485;69486;69487;69488 58547;58548;58549 58547 3 0 48108000 11248000 YQGVNLYVK LKRKFEQMKQDRITRYQGVNLYVKNLDDGI QDRITRYQGVNLYVKNLDDGIDDERLRKEF R Y Q V K N 0 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 2 2 0 0 9 0 1082.576 P11940;Q4VXU2 P11940 291 299 PABPC1;PABPC1L Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like yes no 2 8.3766E-05 144.35 By MS/MS By MS/MS 3.29 1.39 1 1 2 1 2 5 2 327330000 0 239660000 87673000 15893 530 16656 69489;69490;69491;69492;69493;69494;69495 58550;58551;58552;58553;58554;58555 58552 6 0 96181000 16609000 YQILPLHSQIPR MQKHLEMNPHFGSHRYQILPLHSQIPREEQ SHRYQILPLHSQIPREEQRKVFDPVPVGVT R Y Q P R E 0 1 0 0 0 2 0 0 1 2 2 0 0 0 2 1 0 0 1 0 0 0 12 0 1463.8249 Q08211 Q08211 681 692 DHX9 ATP-dependent RNA helicase A yes yes 2;3 3.3899E-05 136.63 By matching By MS/MS By MS/MS 2.08 0.954 4 4 3 1 1 5 6 428360000 2276100 185700000 240380000 15894 1182 16657 69496;69497;69498;69499;69500;69501;69502;69503;69504;69505;69506;69507 58556;58557;58558;58559;58560;58561;58562;58563;58564;58565;58566;58567;58568;58569;58570 58566 15 2276100 84177000 52948000 YQIPLSADQLFTQSVLDK EPNETTDLEKSLLIRYQIPLSADQLFTQSV PLSADQLFTQSVLDKSLTKSNYQSRLHDLL R Y Q D K S 1 0 0 2 0 3 0 0 0 1 3 1 0 1 1 2 1 0 1 1 0 0 18 0 2065.0732 P42694 P42694 432 449 HELZ Probable helicase with zinc finger domain yes yes 2 1.0388E-06 82.362 By MS/MS 1 0 1 1 0 0 0 0 15895 805 16658 69508 58571 58571 1 0 0 0 YQKSTELLIR HRYRPGTVALREIRRYQKSTELLIRKLPFQ REIRRYQKSTELLIRKLPFQRLVREIAQDF R Y Q I R K 0 1 0 0 0 1 1 0 0 1 2 1 0 0 0 1 1 0 1 0 0 0 10 1 1249.703 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 55 64 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2;3 6.2297E-06 154.49 By MS/MS By MS/MS 7.69 1.14 2 4 4 2 1 7 6 899990000 0 229530000 670460000 15896 1114;1512 16659 69509;69510;69511;69512;69513;69514;69515;69516;69517;69518;69519;69520;69521 58572;58573;58574;58575;58576;58577;58578;58579;58580;58581 58580 10 0 113910000 116970000 YQLAVTK VFGRLFDLCHPIHKKYQLAVTKVFGRFITA LCHPIHKKYQLAVTKVFGRFITAIVVASEK K Y Q T K V 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 1 1 0 0 7 0 821.4647 Q8NDV3 Q8NDV3 530 536 SMC1B Structural maintenance of chromosomes protein 1B yes yes 2 0.044347 79.116 By MS/MS 1 0 1 1 7578600 0 0 7578600 15897 1636 16660 69522 58582 58582 1 0 0 1632900 YQLDPTASISAK WTSGTNCTRFGIAAKYQLDPTASISAKVNN AAKYQLDPTASISAKVNNSSLIGVGYTQTL K Y Q A K V 2 0 0 1 0 1 0 0 0 1 1 1 0 0 1 2 1 0 1 0 0 0 12 0 1292.6612 P45880 P45880 236 247 VDAC2 Voltage-dependent anion-selective channel protein 2 yes yes 2 0.022033 83.397 By MS/MS 6 0 1 1 68917000 0 0 68917000 15898 819 16661 69523 58583 58583 1 0 0 10311000 YQLEIPENFTTR IGCRTIVYWGIGRNRYQLEIPENFTTRNLP RNRYQLEIPENFTTRNLPEEYELKSTKKGC R Y Q T R N 0 1 1 0 0 1 2 0 0 1 1 0 0 1 1 0 2 0 1 0 0 0 12 0 1509.7464 P52701 P52701 977 988 MSH6 DNA mismatch repair protein Msh6 yes yes 2 0.037994 76.282 By matching By MS/MS 1.5 0.5 1 1 1 1 10146000 0 1777100 8368500 15899 911 16662 69524;69525 58584 58584 1 0 868640 1891100 YQLLQLVEPFGVISNHLILNK RVVHIMDFQRGKNLRYQLLQLVEPFGVISN VEPFGVISNHLILNKINEAFIEMATTEDAQ R Y Q N K I 0 0 2 0 0 2 1 1 1 2 5 1 0 1 1 1 0 0 1 2 0 0 21 0 2437.3733 P43243 P43243 413 433 MATR3 Matrin-3 yes yes 2;3 2.5895E-15 162.37 By MS/MS By MS/MS 2.25 0.968 2 3 2 1 2 6 557140000 0 7372900 549760000 15900 812 16663 69526;69527;69528;69529;69530;69531;69532;69533 58585;58586;58587;58588;58589;58590 58589 6 0 3288900 119780000 YQNLLPLFVGHNMLLVSEEPK VFPNQVLKPFLEDSKYQNLLPLFVGHNMLL LFVGHNMLLVSEEPKVKEMVRILRTVPFLP K Y Q P K V 0 0 2 0 0 1 2 1 1 0 5 1 1 1 2 1 0 0 1 2 0 0 21 0 2440.2825 Q7Z7H8 Q7Z7H8 140 160 MRPL10 39S ribosomal protein L10, mitochondrial yes yes 3 7.0794E-06 80.98 By MS/MS 6.5 0.5 1 1 2 11766000 0 0 11766000 15901 1536 16664 69534;69535 58591 58591 1 0 0 2021100 YQQQYLQPLPLTHYELVTDAFGHR PDRRLRVDFADTEHRYQQQYLQPLPLTHYE PLTHYELVTDAFGHRAPDPLRGARDRTPPL R Y Q H R A 1 1 0 1 0 4 1 1 2 0 4 0 0 1 2 0 2 0 3 1 0 0 24 0 2916.4559 Q96T37 Q96T37 533 556 RBM15 Putative RNA-binding protein 15 yes yes 4 3.5322E-22 152.81 By MS/MS 3 0.816 1 1 1 3 46007000 0 0 46007000 15902 1838 16665 69536;69537;69538 58592;58593 58593 2 0 0 9685900 YQTLSLK KIRELGSLPQEAFEKYQTLSLKQLFRKLEQ LPQEAFEKYQTLSLKQLFRKLEQCNTELKK K Y Q L K Q 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 1 0 1 0 0 0 7 0 851.47527 Q9UQE7 Q9UQE7 957 963 SMC3 Structural maintenance of chromosomes protein 3 yes yes 2 0.055398 76.035 By MS/MS 2 0 1 1 11626000 0 0 11626000 15903 2222 16666 69539 58594 58594 1 0 0 2627300 YQTQPVTLGEVEQVQSGK TRNRIDTRQRRMNARYQTQPVTLGEVEQVQ QPVTLGEVEQVQSGKLIPFSPAVNTSVSTV R Y Q G K L 0 0 0 0 0 4 2 2 0 0 1 1 0 0 1 1 2 0 1 3 0 0 18 0 1990.0007 O95425 O95425 850 867 SVIL Supervillin yes yes 2 2.6751E-16 175.21 By MS/MS By MS/MS 1.5 0.5 1 1 1 1 8482000 0 3903300 4578700 15904 325 16667 69540;69541 58595;58596 58595 2 0 1907900 1034700 YQYGGLNSGRPVTPPR MCSFQILKPSEKKAKYQYGGLNSGRPVTPP QYGGLNSGRPVTPPRTANPPKKR_______ K Y Q P R T 0 2 1 0 0 1 0 3 0 0 1 0 0 0 3 1 1 0 2 1 0 0 16 1 1760.8958 P62140 P62140 304 319 PPP1CB Serine/threonine-protein phosphatase PP1-beta catalytic subunit yes yes 2 0.057353 76.326 By MS/MS 6 0 1 1 18560000 0 0 18560000 15905 1007 16668 69542 58597 58597 1 0 0 2776700 YRDAIAEIR ENMMNAIFKGVFVHRYRDAIAEIRAICIEE GVFVHRYRDAIAEIRAICIEEIGIWMKMYS R Y R I R A 2 2 0 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 9 1 1105.588 Q8N3U4;Q8WVM7 Q8N3U4 297 305 STAG2;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.004132 117.7 By MS/MS 2 0 1 1 7185500 0 0 7185500 15906 1603 16669 69543 58598 58598 1 0 0 1623800 YRELGNIIQK ECLMQAIDAVKPGVRYRELGNIIQKHAQAN KPGVRYRELGNIIQKHAQANGFSVVRSYCG R Y R Q K H 0 1 1 0 0 1 1 1 0 2 1 1 0 0 0 0 0 0 1 0 0 0 10 1 1232.6877 P53582 P53582 269 278 METAP1 Methionine aminopeptidase 1 yes yes 3 0.032071 58.889 By MS/MS 5 0 1 1 15047000 0 15047000 0 15907 920 16670 69544 58599 58599 1 0 3878600 0 YRENIASLMDK DNLKDPKYVRDSKIRYRENIASLMDKCFPE SKIRYRENIASLMDKCFPEKNKPGEIAKYM R Y R D K C 1 1 1 1 0 0 1 0 0 1 1 1 1 0 0 1 0 0 1 0 0 0 11 1 1338.6602 Q99986 Q99986 278 288 VRK1 Serine/threonine-protein kinase VRK1 yes yes 2;3 0.00024791 147.91 By MS/MS By MS/MS 4.4 0.8 1 1 3 1 4 54433000 0 4797100 49636000 15908 1871 16671 69545;69546;69547;69548;69549 58600;58601;58602 58601 3 0 1236500 7018600 YRPGTVALR RKSAPATGGVKKPHRYRPGTVALREIRRYQ VKKPHRYRPGTVALREIRRYQKSTELLIRK R Y R L R E 1 2 0 0 0 0 0 1 0 0 1 0 0 0 1 0 1 0 1 1 0 0 9 1 1031.5876 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 42 50 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 2 1.6275E-15 175.51 By matching By MS/MS By MS/MS 5.96 2.69 2 2 2 2 1 3 4 4 4 1 1 11 13 17077000000 4423100 5049600000 12023000000 15909 1114;1512 16672 69550;69551;69552;69553;69554;69555;69556;69557;69558;69559;69560;69561;69562;69563;69564;69565;69566;69567;69568;69569;69570;69571;69572;69573;69574 58603;58604;58605;58606;58607;58608;58609;58610;58611;58612;58613;58614;58615;58616;58617;58618;58619;58620;58621;58622;58623;58624;58625;58626;58627;58628;58629;58630;58631;58632;58633 58612 31 2482700 2473800000 2833800000 YRPGTVALREIR RKSAPATGGVKKPHRYRPGTVALREIRRYQ PHRYRPGTVALREIRRYQKSTELLIRKLPF R Y R I R R 1 3 0 0 0 0 1 1 0 1 1 0 0 0 1 0 1 0 1 1 0 0 12 2 1429.8154 P84243;Q16695;P68431;Q6NXT2;Q71DI3 Q71DI3 42 53 H3F3A;HIST3H3;HIST1H3A;H3F3C;HIST2H3A Histone H3.3;Histone H3.1t;Histone H3.1;Histone H3.3C;Histone H3.2 no no 3 0.0030393 94.688 By MS/MS By MS/MS 7.6 1.02 1 1 2 1 3 2 71933000 0 32997000 38936000 15910 1114;1512 16673 69575;69576;69577;69578;69579 58634;58635 58634 1 0 15389000 6769000 YRPLFDYFLK EILERFPGAYLKGKKYRPLFDYFLKCKENG LKGKKYRPLFDYFLKCKENGAFTVLVDNYV K Y R L K C 0 1 0 1 0 0 0 0 0 0 2 1 0 2 1 0 0 0 2 0 0 0 10 1 1360.718 P41252 P41252 289 298 IARS Isoleucine--tRNA ligase, cytoplasmic yes yes 3 0.014955 68.893 By MS/MS 2 0 1 1 1716600 0 0 1716600 15911 796 16674 69580 58636 58636 1 0 0 387920 YRPQTLNDLISHQDILSTIQK QPAATKIRNLPWVEKYRPQTLNDLISHQDI NDLISHQDILSTIQKFINEDRLPHLLLYGP K Y R Q K F 0 1 1 2 0 3 0 0 1 3 3 1 0 0 1 2 2 0 1 0 0 0 21 1 2482.318 P40937 P40937 26 46 RFC5 Replication factor C subunit 5 yes yes 3;4 2.7924E-14 126.26 By MS/MS By MS/MS 6 0 4 2 2 68622000 0 28623000 39999000 15912 787 16675 69581;69582;69583;69584 58637;58638;58639;58640 58640 4 0 9908200 5984200 YRPYDGAASAYAQNYR ASLYYQDVYSLYEPRYRPYDGAASAYAQNY RPYDGAASAYAQNYRYPEPERPSSRASHSS R Y R Y R Y 4 2 1 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 4 0 0 0 16 1 1864.8493 O15027 O15027 1199 1214 SEC16A Protein transport protein Sec16A yes yes 2;3 5.9686E-05 126.1 By MS/MS By MS/MS 1.25 0.433 3 1 1 3 29467000 0 3805900 25662000 15913 161 16676 69585;69586;69587;69588 58641;58642;58643 58641 3 0 1860300 5593200 YRTEAHQDVVGR SLKQLYTVTMDVHSRYRTEAHQDVVGRFNE HSRYRTEAHQDVVGRFNERFILSLASCKKC R Y R G R F 1 2 0 1 0 1 1 1 1 0 0 0 0 0 0 0 1 0 1 2 0 0 12 1 1429.7062 Q9H0A0 Q9H0A0 171 182 NAT10 N-acetyltransferase 10 yes yes 3 0.014317 69.864 By MS/MS By MS/MS 1.67 0.471 1 2 2 1 4516700 0 3593600 923100 15914 1959 16677 69589;69590;69591 58644;58645 58644 2 0 1632000 208600 YRVPDVLVADPPIAR MTRFRIDELEPRRPRYRVPDVLVADPPIAR YRVPDVLVADPPIARLSVSGRDENSVELTM R Y R A R L 2 2 0 2 0 0 0 0 0 1 1 0 0 0 3 0 0 0 1 3 0 0 15 1 1679.9359 Q14697 Q14697 113 127 GANAB Neutral alpha-glucosidase AB yes yes 3 0.0037903 71.08 By MS/MS By MS/MS 2 0 2 1 1 12436000 0 6268200 6168300 15915 1317 16678 69592;69593 58646;58647 58646 2 0 2822600 1393900 YSAVLDAVIASAGLLR QNVKQLYALVCETQRYSAVLDAVIASAGLL SAVLDAVIASAGLLRAEKKLRPHLAKVLVY R Y S L R A 4 1 0 1 0 0 0 1 0 1 3 0 0 0 0 2 0 0 1 2 0 0 16 0 1617.909 Q96P11 Q96P11 46 61 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase yes yes 2 0.011843 70.089 By MS/MS 4 0 1 1 1736000 0 0 1736000 15916 1815 16679 69594 58648 58648 1 0 0 283540 YSDADIEPFLK NTKEGLAELYEYKKKYSDADIEPFLKNSSQ YKKKYSDADIEPFLKNSSQFFQSYVERGLR K Y S L K N 1 0 0 2 0 0 1 0 0 1 1 1 0 1 1 1 0 0 1 0 0 0 11 0 1296.6238 Q14008 Q14008 1860 1870 CKAP5 Cytoskeleton-associated protein 5 yes yes 2 0.00032712 121.73 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 37068000 0 6516400 30551000 15917 1279 16680 69595;69596;69597 58649;58650 58649 2 0 3185100 6617200 YSDMIVAAIQAEK PKRAKASKKSTDHPKYSDMIVAAIQAEKNR PKYSDMIVAAIQAEKNRAGSSRQSIQKYIK K Y S E K N 3 0 0 1 0 1 1 0 0 2 0 1 1 0 0 1 0 0 1 1 0 0 13 0 1437.7174 P07305 P07305 28 40 H1F0 Histone H1.0;Histone H1.0, N-terminally processed yes yes 2;3 0.0006519 119.03 By MS/MS By MS/MS 4.92 1.89 1 1 1 1 1 5 2 2 10 212030000 0 15363000 196660000 15918 457 16681;16682 69598;69599;69600;69601;69602;69603;69604;69605;69606;69607;69608;69609 58651;58652;58653;58654;58655;58656;58657;58658 58655 172 8 0 5318100 31111000 YSEKEDKYEEEIK NVTNNLKSLEAASEKYSEKEDKYEEEIKLL EKYSEKEDKYEEEIKLLSDKLKEAETRAEF K Y S I K L 0 0 0 1 0 0 5 0 0 1 0 3 0 0 0 1 0 0 2 0 0 0 13 2 1688.7781 P67936 P67936 178 190 TPM4 Tropomyosin alpha-4 chain yes yes 3 0.025936 62.68 By MS/MS By matching 6 0 2 1 1 12723000 0 5099200 7623700 15919 1074 16683 69610;69611 58659 58659 1 0 1765200 1140600 YSESLLGVPIAYDNIK KRTGIREQLDAELLRYSESLLGVPIAYDNI SESLLGVPIAYDNIKVVGELGDIYDDQGHI R Y S I K V 1 0 1 1 0 0 1 1 0 2 2 1 0 0 1 2 0 0 2 1 0 0 16 0 1780.9247 Q3B726 Q3B726 82 97 TWISTNB DNA-directed RNA polymerase I subunit RPA43 yes yes 2 0.0044713 82.505 By MS/MS 5 0 1 1 7246700 0 0 7246700 15920 1410 16684 69612 58660 58660 1 0 0 1010800 YSEVFEAINITNNEK NQDDYQLVRKLGRGKYSEVFEAINITNNEK YSEVFEAINITNNEKVVVKILKPVKKKKIK K Y S E K V 1 0 3 0 0 0 3 0 0 2 0 1 0 1 0 1 1 0 1 1 0 0 15 0 1769.8472 P68400;Q8NEV1 P68400 50 64 CSNK2A1;CSNK2A3 Casein kinase II subunit alpha;Casein kinase II subunit alpha 3 yes no 2 0.00031532 133.42 By MS/MS 5 0 1 1 8041300 0 0 8041300 15921 1080 16685 69613 58661 58661 1 0 0 1121600 YSFIQALVR KLLDIEGLYSKVRSRYSFIQALVRRIRGLL SKVRSRYSFIQALVRRIRGLLRISRN____ R Y S V R R 1 1 0 0 0 1 0 0 0 1 1 0 0 1 0 1 0 0 1 1 0 0 9 0 1095.6077 Q92621 Q92621 1993 2001 NUP205 Nuclear pore complex protein Nup205 yes yes 2 0.00058217 127.12 By MS/MS 1 0 1 1 11107000 0 0 11107000 15922 1714 16686 69614 58662 58662 1 0 0 2393200 YSFLQFDPAPR CGNQAAIMELDDTLKYSFLQFDPAPRRGEP DTLKYSFLQFDPAPRRGEPHVTRRTPDYFL K Y S P R R 1 1 0 1 0 1 0 0 0 0 1 0 0 2 2 1 0 0 1 0 0 0 11 0 1339.6561 P67775;P62714 P67775 284 294 PPP2CA;PPP2CB Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform yes no 2 4.1995E-10 172.59 By matching By MS/MS 6 0 2 1 1 29132000 0 8543400 20588000 15923 1030 16687 69615;69616 58663 58663 1 0 2957400 3080200 YSGAYGASVSDEELK DRMKESSPSGSKSQRYSGAYGASVSDEELK YSGAYGASVSDEELKRRVAEELALEQAKKE R Y S L K R 2 0 0 1 0 0 2 2 0 0 1 1 0 0 0 3 0 0 2 1 0 0 15 0 1574.71 Q9NX63 Q9NX63 49 63 CHCHD3 MICOS complex subunit MIC19 yes yes 2 0.00052454 142.47 By MS/MS 7 0 1 1 15709000 0 0 15709000 15924 2087 16688 69617 58664 58664 1 0 0 2787400 YSGELSGIR RRRGQVREVRKEEQRYSGELSGIRAGVKKS RKEEQRYSGELSGIRAGVKKSIKLK_____ R Y S I R A 0 1 0 0 0 0 1 2 0 1 1 0 0 0 0 2 0 0 1 0 0 0 9 0 980.49271 Q9NQZ2 Q9NQZ2 461 469 UTP3 Something about silencing protein 10 yes yes 2 0.00056269 117.1 By matching By MS/MS By MS/MS 3.4 1.02 1 2 1 1 1 2 2 45170000 13987000 7099300 24084000 15925 2037 16689 69618;69619;69620;69621;69622 58665;58666 58666 2 16853000 2638700 4353500 YSGGNYRDNYDN RSRDYNGRNQGGYDRYSGGNYRDNYDN___ YDRYSGGNYRDNYDN_______________ R Y S D N - 0 1 3 2 0 0 0 2 0 0 0 0 0 0 0 1 0 0 3 0 0 0 12 1 1436.5593 P98179 P98179 146 157 RBM3 RNA-binding protein 3 yes yes 2 2.1985E-07 170.89 By MS/MS 8 0 1 1 2912400 2912400 0 0 15926 1118 16690 69623 58667 58667 1 2500400 0 0 YSGPEDDAAISLAFSK KEYFADMKRHRIQFKYSGPEDDAAISLAFS SGPEDDAAISLAFSKKQIDDRKEWLTNFME K Y S S K K 3 0 0 2 0 0 1 1 0 1 1 1 0 1 1 3 0 0 1 0 0 0 16 0 1669.7835 P11388 P11388 640 655 TOP2A DNA topoisomerase 2-alpha yes yes 2 3.3474E-05 132.99 By MS/MS By MS/MS 1.5 0.5 2 2 2 2 98985000 0 14777000 84207000 15927 524 16691 69624;69625;69626;69627 58668;58669;58670;58671;58672 58672 5 0 7000100 18340000 YSGSYNDYLR LDYRRLPDAHSDYARYSGSYNDYLRAAQMH SDYARYSGSYNDYLRAAQMHSGYQRRM___ R Y S L R A 0 1 1 1 0 0 0 1 0 0 1 0 0 0 0 2 0 0 3 0 0 0 10 0 1236.5411 Q96PK6 Q96PK6 648 657 RBM14 RNA-binding protein 14 yes yes 2 0.00050318 128.12 By MS/MS By MS/MS 5.29 3.57 1 1 2 2 1 3 4 117840000 0 9318500 108520000 15928 1818 16692 69628;69629;69630;69631;69632;69633;69634 58673;58674;58675;58676;58677;58678 58673 5 0 25609000 22465000 YSGTLNLDR ENQTPEFFQDVCKPKYSGTLNLDRVTREAC DVCKPKYSGTLNLDRVTREACPELDYFVVF K Y S D R V 0 1 1 1 0 0 0 1 0 0 2 0 0 0 0 1 1 0 1 0 0 0 9 0 1037.5142 P49327 P49327 1996 2004 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase yes yes 2 0.0075741 92.439 By MS/MS By MS/MS 1.33 0.471 2 1 2 1 3782900 0 3782900 0 15929 853 16693 69635;69636;69637 58679;58680 58679 2 0 1800500 0 YSGVNQSMLFDK NGDVEVRRSCRIRSRYSGVNQSMLFDKLIT RSRYSGVNQSMLFDKLITNTAEAVLQKMDD R Y S D K L 0 0 1 1 0 1 0 1 0 0 1 1 1 1 0 2 0 0 1 1 0 0 12 0 1387.6442 Q6PL18 Q6PL18 164 175 ATAD2 ATPase family AAA domain-containing protein 2 yes yes 2 0.00035213 128.81 By MS/MS 1 0 1 1 9516400 0 0 9516400 15930 1498 16694 69638 58681 58681 1 0 0 2050500 YSHLQPGDHLTDITLK HKFHVDISLTDFIQKYSHLQPGDHLTDITL SHLQPGDHLTDITLKVAGRIHAKRASGGKL K Y S L K V 0 0 0 2 0 1 0 1 2 1 3 1 0 0 1 1 2 0 1 0 0 0 16 0 1836.937 Q15046 Q15046 112 127 KARS Lysine--tRNA ligase yes yes 4 0.061086 29.618 By MS/MS 3 0 1 1 2940800 0 2940800 0 15931 1336 16695 69639 58682 58682 1 0 1253700 0 YSIEQLTTYWLQPGDDFEEAIR IKDNCANELDLLAQKYSIEQLTTYWLQPGD TYWLQPGDDFEEAIRVYAKVALRPDCKYKI K Y S I R V 1 1 0 2 0 2 3 1 0 2 2 0 0 1 1 1 2 1 2 0 0 0 22 0 2673.2599 P03243;P03244 P03243 152 173 yes no 2;3 0 335.91 By MS/MS 1.5 0.5 3 3 6 151460000 0 0 151460000 15932 406 16696 69640;69641;69642;69643;69644;69645 58683;58684;58685;58686 58685 4 0 0 33713000 YSILQQTPR ATDRDEPDTMHTRLKYSILQQTPRSPGLFS MHTRLKYSILQQTPRSPGLFSVHPSTGVIT K Y S P R S 0 1 0 0 0 2 0 0 0 1 1 0 0 0 1 1 1 0 1 0 0 0 9 0 1104.5928 Q14574 Q14574 282 290 DSC3 Desmocollin-3 yes yes 2 3.0237E-23 185.55 By MS/MS By matching 9.67 0.471 1 2 2 1 16931000 15295000 0 1636700 15933 1306 16697 69646;69647;69648 58687;58688 58687 2 18358000 0 3579600 YSLDPENPTK ______________________________ ______________________________ R Y S T K S 0 0 1 1 0 0 1 0 0 0 1 1 0 0 2 1 1 0 1 0 0 0 10 0 1162.5506 P18621 P18621 4 13 RPL17 60S ribosomal protein L17 yes yes 2 0.00013389 144.09 By MS/MS By MS/MS 6.5 0.5 2 2 2 2 257780000 0 57330000 200450000 15934 597 16698 69649;69650;69651;69652 58689;58690;58691;58692;58693 58693 5 0 32637000 35252000 YSLLPFWYTLLYQAHR PSQHNDIIRDALGQRYSLLPFWYTLLYQAH SLLPFWYTLLYQAHREGIPVMRPLWVQYPQ R Y S H R E 1 1 0 0 0 1 0 0 1 0 4 0 0 1 1 1 1 1 3 0 0 0 16 0 2070.0727 Q14697 Q14697 705 720 GANAB Neutral alpha-glucosidase AB yes yes 3 2.3212E-09 170.79 By MS/MS 1.5 0.5 1 1 2 5118800 0 0 5118800 15935 1317 16699 69653;69654 58694 58694 1 0 0 1149900 YSLQSANASSLSSGQLK SYGLGSEQRSQAPARYSLQSANASSLSSGQ LQSANASSLSSGQLKSPSLSQSQASRVLGQ R Y S L K S 2 0 1 0 0 2 0 1 0 0 3 1 0 0 0 6 0 0 1 0 0 0 17 0 1739.869 Q9H2P0 Q9H2P0 392 408 ADNP Activity-dependent neuroprotector homeobox protein yes yes 2 5.9665E-09 164.48 By MS/MS By MS/MS 2.8 0.748 2 2 1 3 2 30627000 0 11382000 19245000 15936 1975 16700 69655;69656;69657;69658;69659 58695;58696;58697 58696 3 0 4720700 4193200 YSLTYIYTGLSK LLLGPAVPQENQDGRYSLTYIYTGLSKHVE DGRYSLTYIYTGLSKHVEDVPAFQALGSLN R Y S S K H 0 0 0 0 0 0 0 1 0 1 2 1 0 0 0 2 2 0 3 0 0 0 12 0 1407.7286 P25311 P25311 28 39 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2 7.5812E-12 174.98 By MS/MS By matching By matching 5.55 3.23 1 2 1 1 1 1 1 1 2 9 1 1 319170000 316680000 703000 1786300 15937 656 16701 69660;69661;69662;69663;69664;69665;69666;69667;69668;69669;69670 58698;58699;58700;58701;58702;58703;58704;58705 58704 8 348620000 3556600 403670 YSLVEAK GAGSIAGASASPKEKYSLVEAKRKKLISPE ASASPKEKYSLVEAKRKKLISPESTVMLLE K Y S A K R 1 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 1 1 0 0 7 0 808.43307 P15924 P15924 2029 2035 DSP Desmoplakin yes yes 2 0.071548 72.138 By MS/MS 1 0 1 1 4842200 0 4842200 0 15938 572 16702 69671 58706 58706 1 0 2366800 0 YSLVSEQLEPAATSTYR SLRSLRLGPGGLDDRYSLVSEQLEPAATST LVSEQLEPAATSTYRAFAYERQASSSSSRA R Y S Y R A 2 1 0 0 0 1 2 0 0 0 2 0 0 0 1 3 2 0 2 1 0 0 17 0 1913.9371 Q9Y446 Q9Y446 195 211 PKP3 Plakophilin-3 yes yes 2 9.2087E-14 182.35 By matching By MS/MS 3 0 2 1 1 9265200 2740700 0 6524500 15939 2282 16703 69672;69673 58707 58707 1 3162100 0 1265400 YSNDLYELQASR GTRLLVFGGMVEYGKYSNDLYELQASRWEW YGKYSNDLYELQASRWEWKRLKAKTPKNGP K Y S S R W 1 1 1 1 0 1 1 0 0 0 2 0 0 0 0 2 0 0 2 0 0 0 12 0 1457.6787 P51610 P51610 106 117 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 yes yes 2 5.0215E-12 178.46 By matching By MS/MS 2 0 2 1 1 13393000 7681800 0 5711300 15940 897 16704 69674;69675 58708 58708 1 9255600 0 1290600 YSNEDTLSVALPYFWEHFDK HLPKSTFVLDEFKRKYSNEDTLSVALPYFW TLSVALPYFWEHFDKDGWSLWYSEYRFPEE K Y S D K D 1 0 1 2 0 0 2 0 1 0 2 1 0 2 1 2 1 1 2 1 0 0 20 0 2460.1274 P26641 P26641 297 316 EEF1G Elongation factor 1-gamma yes yes 3 0.0015714 59.163 By matching By MS/MS 4 0 2 1 1 10513000 1263700 0 9248900 15941 674 16705 69676;69677 58709 58709 1 985950 0 1510600 YSNMEQSLFTR HHQLPPVIKNMAFQKYSNMEQSLFTRFVRV AFQKYSNMEQSLFTRFVRVGVPTVDLDAQG K Y S T R F 0 1 1 0 0 1 1 0 0 0 1 0 1 1 0 2 1 0 1 0 0 0 11 0 1374.6238 O60306 O60306 1112 1122 AQR Intron-binding protein aquarius yes yes 2 0.00012369 140.16 By MS/MS 1.5 0.5 1 1 2 10777000 0 0 10777000 15942 225 16706 69678;69679 58710 58710 1 0 0 2378600 YSPSQNSPIHHIPSR PERSGSGSVGNGSSRYSPSQNSPIHHIPSR YSPSQNSPIHHIPSRRSPAKTIAPQNAPRD R Y S S R R 0 1 1 0 0 1 0 0 2 2 0 0 0 0 3 4 0 0 1 0 0 0 15 0 1718.8489 Q9NYF8 Q9NYF8 284 298 BCLAF1 Bcl-2-associated transcription factor 1 yes yes 3 0.0074383 62.378 By MS/MS 2 0.816 1 1 1 3 28722000 0 0 28722000 15943 2097 16707 69680;69681;69682 58711 58711 1 0 0 6028900 YSPTSPTYSPTSPK TYSPTSPVYTPTSPKYSPTSPTYSPTSPKY KYSPTSPTYSPTSPKYSPTSPTYSPTSPKG K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 4 3 0 2 0 0 0 14 0 1511.7144 P24928 P24928 1909 1922 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes no 2 3.2446E-07 167.6 By MS/MS 1 0 1 1 8151400 0 0 8151400 15944 653 16708 69683 58712 58712 1 0 0 1756300 YSPTSPTYSPTTPK KYSPTSPKYSPTSPKYSPTSPTYSPTTPKY KYSPTSPTYSPTTPKYSPTSPTYSPTSPVY K Y S P K Y 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4 3 4 0 2 0 0 0 14 0 1525.73 P24928 P24928 1874 1887 POLR2A DNA-directed RNA polymerase II subunit RPB1 yes yes 2 0.00080025 113.22 By MS/MS 1 0 1 1 6318200 0 0 6318200 15945 653 16709 69684 58713 58713 1 0 0 1361400 YSPTTSHVGA LLLSGGADNKLYSYRYSPTTSHVGA_____ LYSYRYSPTTSHVGA_______________ R Y S G A - 1 0 0 0 0 0 0 1 1 0 0 0 0 0 1 2 2 0 1 1 0 0 10 0 1018.472 Q9GZL7 Q9GZL7 414 423 WDR12 Ribosome biogenesis protein WDR12 yes yes 2 0.031276 77.674 By MS/MS 4.5 0.5 1 1 2 8983700 8983700 0 0 15946 1949 16710 69685;69686 58714 58714 1 7028800 0 0 YSQFINFPIYVWSSK SDYLELDTIKNLVKKYSQFINFPIYVWSSK YSQFINFPIYVWSSKTETVEEPMEEEEAAK K Y S S K T 0 0 1 0 0 1 0 0 0 2 0 1 0 2 1 3 0 1 2 1 0 0 15 0 1877.9352 P14625 P14625 271 285 HSP90B1 Endoplasmin yes yes 2 0.0064934 80.469 By MS/MS 2 0 1 1 5114400 0 5114400 0 15947 560 16711 69687 58715 58715 1 0 2303100 0 YSQKEDKYEEEIK NVTNNLKSLEAQAEKYSQKEDKYEEEIKIL EKYSQKEDKYEEEIKILTDKLKEAETRAEF K Y S I K I 0 0 0 1 0 1 4 0 0 1 0 3 0 0 0 1 0 0 2 0 0 0 13 2 1687.7941 P06753 P06753 215 227 TPM3 Tropomyosin alpha-3 chain yes yes 3 0.0039206 85.457 By matching By MS/MS 6 0 2 1 1 17292000 0 5849300 11442000 15948 450 16712 69688;69689 58716 58716 1 0 2024800 1711900 YSQLVVETIR SKKRKNSKKKNQPGKYSQLVVETIRRLGER NQPGKYSQLVVETIRRLGERNGSSLAKIYT K Y S I R R 0 1 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 10 0 1206.6608 Q92522 Q92522 48 57 H1FX Histone H1x yes yes 2 2.4279E-22 190.02 By MS/MS By MS/MS By MS/MS 6.29 1.39 1 1 2 1 2 2 2 3 312450000 9723000 78722000 224000000 15949 1706 16713 69690;69691;69692;69693;69694;69695;69696 58717;58718;58719;58720 58718 4 15139000 27577000 33448000 YSQLVVETIRR SKKRKNSKKKNQPGKYSQLVVETIRRLGER QPGKYSQLVVETIRRLGERNGSSLAKIYTE K Y S R R L 0 2 0 0 0 1 1 0 0 1 1 0 0 0 0 1 1 0 1 2 0 0 11 1 1362.7619 Q92522 Q92522 48 58 H1FX Histone H1x yes yes 2 6.9842E-10 172.69 By MS/MS 6 0 1 1 18108000 0 18108000 0 15950 1706 16714 69697 58721 58721 1 0 6268300 0 YSQNIYIQNR LHNLSYQLEAELPEKYSQNIYIQNRNIQTD ELPEKYSQNIYIQNRNIQTDNNKSIGCFGS K Y S N R N 0 1 2 0 0 2 0 0 0 2 0 0 0 0 0 1 0 0 2 0 0 0 10 0 1297.6415 Q99959 Q99959 626 635 PKP2 Plakophilin-2 yes yes 2 0.00023946 122.52 By matching By MS/MS 2.33 0.471 2 1 1 2 24573000 4001600 0 20571000 15951 1870 16715 69698;69699;69700 58722 58722 1 4821500 0 4141700 YSQSDLEQTK RQVQSQAHGLQMRLKYSQSDLEQTKTRHLA QMRLKYSQSDLEQTKTRHLALNLQEKSKLE K Y S T K T 0 0 0 1 0 2 1 0 0 0 1 1 0 0 0 2 1 0 1 0 0 0 10 0 1197.5513 Q14683 Q14683 714 723 SMC1A Structural maintenance of chromosomes protein 1A yes yes 2 1.7286E-07 161.92 By MS/MS 1.5 0.5 1 1 2 7436000 0 7436000 0 15952 1312 16716 69701;69702 58723;58724 58724 2 0 3456400 0 YSQTGNYELAVALSR FFNSAVQKAAPGSQRYSQTGNYELAVALSR YSQTGNYELAVALSRWVFKEEGVLRVGPVS R Y S S R W 2 1 1 0 0 1 1 1 0 0 2 0 0 0 0 2 1 0 2 1 0 0 15 0 1670.8264 P39656 P39656 283 297 DDOST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit yes yes 2 0.00028742 126.1 By MS/MS 5 0 1 1 2930800 0 2930800 0 15953 779 16717 69703 58725 58725 1 0 755460 0 YSQVLANGLDNK PDWFLNRQKDVKDGKYSQVLANGLDNKLRE DGKYSQVLANGLDNKLREDLERLKKIRAHR K Y S N K L 1 0 2 1 0 1 0 1 0 0 2 1 0 0 0 1 0 0 1 1 0 0 12 0 1320.6674 P62269 P62269 95 106 RPS18 40S ribosomal protein S18 yes yes 2 2.1822E-34 207.34 By MS/MS By MS/MS By MS/MS 8 1.2 1 1 3 1 1 1 4 2 223650000 14815000 193490000 15346000 15954 1014 16718 69704;69705;69706;69707;69708;69709;69710 58726;58727;58728;58729;58730;58731;58732;58733 58730 8 12720000 90848000 11163000 YSQYLDR RALVENCLVPDLWIRYSQYLDRQLKVKDLV LVPDLWIRYSQYLDRQLKVKDLVLSVHNRA R Y S D R Q 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 2 0 0 0 7 0 943.43995 Q15020 Q15020 350 356 SART3 Squamous cell carcinoma antigen recognized by T-cells 3 yes yes 2 0.0038444 113.7 By MS/MS 2 0 1 1 0 0 0 0 15955 1331 16719 69711 58734 58734 1 0 0 0 YSSEVATESPLDFTK GDSFLNEDLNQLIKRYSSEVATESPLDFTK YSSEVATESPLDFTKYLKTSLH________ R Y S T K Y 1 0 0 1 0 0 2 0 0 0 1 1 0 1 1 3 2 0 1 1 0 0 15 0 1672.7832 Q8WTT2 Q8WTT2 779 793 NOC3L Nucleolar complex protein 3 homolog yes yes 2 0.00049643 110.31 By MS/MS By matching 2.5 0.5 1 1 1 1 18933000 0 9550100 9382800 15956 1670 16720 69712;69713 58735 58735 1 0 4300500 1819800 YSVDIPLDK SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD HLMPTRYSVDIPLDKTVVNKDVFRDPALKR R Y S D K T 0 0 0 2 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 0 0 9 0 1048.5441 P61353 P61353 85 93 RPL27 60S ribosomal protein L27 yes yes 2 0.00063913 133.86 By MS/MS By MS/MS By MS/MS 7 1.7 1 1 1 2 3 1 1 5 3 442020000 8834500 106250000 326930000 15957 993 16721 69714;69715;69716;69717;69718;69719;69720;69721;69722 58736;58737;58738;58739 58737 4 7584700 49881000 58178000 YSVDIPLDKTVVNK SFVKVYNYNHLMPTRYSVDIPLDKTVVNKD RYSVDIPLDKTVVNKDVFRDPALKRKARRE R Y S N K D 0 0 1 2 0 0 0 0 0 1 1 2 0 0 1 1 1 0 1 3 0 0 14 1 1589.8665 P61353 P61353 85 98 RPL27 60S ribosomal protein L27 yes yes 2 0.009389 108.43 By MS/MS 8 0 1 1 3286500 0 0 3286500 15958 993 16722 69723 58740 58740 1 0 0 503860 YSVLLPTYNER RSRRELEVRSPRQNKYSVLLPTYNERENLP RQNKYSVLLPTYNERENLPLIVWLLVKSFS K Y S E R E 0 1 1 0 0 0 1 0 0 0 2 0 0 0 1 1 1 0 2 1 0 0 11 0 1353.6929 O60762 O60762 27 37 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 yes yes 2 6.3378E-10 171.56 By MS/MS By MS/MS 7 0 2 1 1 54589000 0 7057900 47531000 15959 231 16723 69724;69725 58741;58742 58742 2 0 4052700 8434000 YSVQLLTPANLLAK ALNHLGEIGTKTTLRYSVQLLTPANLLAKI RYSVQLLTPANLLAKINGKDSIEKEHVEEI R Y S A K I 2 0 1 0 0 1 0 0 0 0 4 1 0 0 1 1 1 0 1 1 0 0 14 0 1529.8817 Q9Y265 Q9Y265 405 418 RUVBL1 RuvB-like 1 yes yes 2 0.0022182 101.12 By matching By MS/MS By MS/MS 4.4 0.49 3 2 1 2 2 101520000 3574200 25191000 72753000 15960 2234 16724 69726;69727;69728;69729;69730 58743;58744;58745;58746 58743 4 2788500 7934400 11625000 YSVWIGGSILASLSTFQQMWISK PSTMKIKIIAPPERKYSVWIGGSILASLST ILASLSTFQQMWISKQEYDESGPSIVHRKC K Y S S K Q 1 0 0 0 0 2 0 2 0 3 2 1 1 1 0 5 1 2 1 1 0 0 23 0 2601.3301 P60709;P63261;P68032;P63267;P62736;Q562R1 P60709 337 359 ACTB;ACTG1;ACTC1;ACTG2;ACTA2;ACTBL2 Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha cardiac muscle 1;Actin, gamma-enteric smooth muscle;Actin, aortic smooth muscle;Beta-actin-like protein 2 no no 3 0.002008 50.255 By MS/MS 5 0 1 1 1937000 0 0 1937000 15961 966;1069;1075;1430 16725 69731 58747 58747 1 0 0 270180 YSYLQQDLPDNPER AYPSLILSDNLRQVRYSYLQQDLPDNPERF RYSYLQQDLPDNPERFNLFPCVLGSPCFIA R Y S E R F 0 1 1 2 0 2 1 0 0 0 2 0 0 0 2 1 0 0 2 0 0 0 14 0 1736.8006 P14373 P14373 340 353 TRIM27 Zinc finger protein RFP yes yes 2 4.1835E-05 160.67 By MS/MS 4 0 1 1 12552000 0 0 12552000 15962 557 16726 69732 58748 58748 1 0 0 2050100 YTACLCDDNPK YLISSIPLQGAFNYKYTACLCDDNPKTFYW FNYKYTACLCDDNPKTFYWDFYTNRTVQIA K Y T P K T 1 0 1 2 2 0 0 0 0 0 1 1 0 0 1 0 1 0 1 0 0 0 11 0 1355.5486 P12273 P12273 86 96 PIP Prolactin-inducible protein yes yes 2 9.9319E-05 123.63 By MS/MS 7 1.41 1 1 1 1 1 5 21359000 21359000 0 0 15963 537 16727 69733;69734;69735;69736;69737 58749;58750 58749 1 18913000 0 0 YTEGVQSLNWTK SLDPIKEWLNSCDLKYTEGVQSLNWTKIMK DLKYTEGVQSLNWTKIMKTIVDDPEGFFEQ K Y T T K I 0 0 1 0 0 1 1 1 0 0 1 1 0 0 0 1 2 1 1 1 0 0 12 0 1424.6936 Q9Y5B9 Q9Y5B9 893 904 SUPT16H FACT complex subunit SPT16 yes yes 2 1.3245E-17 185.29 By matching By MS/MS By MS/MS 2 0.632 1 3 1 1 1 3 159050000 1713400 35634000 121700000 15964 2296 16728 69738;69739;69740;69741;69742 58751;58752;58753;58754 58751 4 2064400 16047000 26511000 YTEHSTVGLAQQWDQLDQLGMR DLGAAMEEALILDNKYTEHSTVGLAQQWDQ GLAQQWDQLDQLGMRMQHNLEQQIQARNTT K Y T M R M 1 1 0 2 0 4 1 2 1 0 3 0 1 0 0 1 2 1 1 1 0 0 22 0 2575.2125 Q13813 Q13813 2282 2303 SPTAN1 Spectrin alpha chain, non-erythrocytic 1 yes yes 3 0.00014705 72.801 By MS/MS 1 0 1 1 6216000 0 6216000 0 15965 1268 16729 69743 58755 58755 587 1 0 3038300 0 YTEMDYAR FTNRTKEEVNEWFTKYTEMDYARAGNKAAF VNEWFTKYTEMDYARAGNKAAFTVSLDPGP K Y T A R A 1 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 1 0 2 0 0 0 8 0 1047.4331 Q9UKD2 Q9UKD2 119 126 MRTO4 mRNA turnover protein 4 homolog yes yes 2 0.0079178 96.285 By MS/MS By MS/MS 6.67 0.471 1 2 2 1 47297000 0 12163000 35134000 15966 2177 16730 69744;69745;69746 58756;58757 58757 2 0 5565800 6234300 YTEVFPPTPVRPAFSFYETLR PLTVSAVQGAHPVLRYTEVFPPTPVRPAFS PTPVRPAFSFYETLRERSSLLPRLDKPCPA R Y T L R E 1 2 0 0 0 0 2 0 0 0 1 0 0 3 4 1 3 0 2 2 0 0 21 1 2516.274 Q9H6R4 Q9H6R4 695 715 NOL6 Nucleolar protein 6 yes yes 3 0.00068051 65.521 By MS/MS 2 0 1 1 1732600 0 1732600 0 15967 1988 16731 69747 58758 58758 1 0 780210 0 YTHAANTVVYSSNK KRTLYSKKYGVDLIRYTHAANTVVYSSNKI RYTHAANTVVYSSNKIDDTIRYLSLHDNKY R Y T N K I 2 0 2 0 0 0 0 0 1 0 0 1 0 0 0 2 2 0 2 2 0 0 14 0 1553.7474 Q6UXN9 Q6UXN9 71 84 WDR82 WD repeat-containing protein 82 yes yes 3 8.9031E-05 145.83 By MS/MS By MS/MS 6 0 2 1 1 12518000 0 4615300 7902500 15968 1506 16732 69748;69749 58759;58760 58760 2 0 1597700 1182300 YTIAALLSPYSYSTTAVVTNPK HAEVVFTANDSGPRRYTIAALLSPYSYSTT SPYSYSTTAVVTNPKE______________ R Y T P K E 3 0 1 0 0 0 0 0 0 1 2 1 0 0 2 3 4 0 3 2 0 0 22 0 2359.2311 P02766 P02766 125 146 TTR Transthyretin yes yes 2;3 7.3045E-19 125.28 By MS/MS 9 0 2 2 4015400 4015400 0 0 15969 396 16733 69750;69751 58761;58762 58761 2 2253800 0 0 YTIAALLSPYSYSTTAVVTNPKE HAEVVFTANDSGPRRYTIAALLSPYSYSTT PYSYSTTAVVTNPKE_______________ R Y T K E - 3 0 1 0 0 0 1 0 0 1 2 1 0 0 2 3 4 0 3 2 0 0 23 1 2488.2737 P02766 P02766 125 147 TTR Transthyretin yes yes 2;3 2.9182E-10 100.43 By MS/MS 9 0 2 2 1023600 1023600 0 0 15970 396 16734 69752;69753 58763;58764 58764 2 574560 0 0 YTIENPR MWSEGNGSHTIRDLKYTIENPRHFVDSHHQ SHTIRDLKYTIENPRHFVDSHHQKPVNAII K Y T P R H 0 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 0 7 0 891.44503 Q7KZF4 Q7KZF4 178 184 SND1 Staphylococcal nuclease domain-containing protein 1 yes yes 2 0.019131 104.11 By matching By MS/MS By matching 2.33 0.471 2 1 1 1 1 13374000 4990500 6686700 1696900 15971 1518 16735 69754;69755;69756 58765 58765 1 6012900 3011100 329120 YTIHSQLEHLQSK ______________________________ DRYTIHSQLEHLQSKYIGTGHADTTKWEWL R Y T S K Y 0 0 0 0 0 2 1 0 2 1 2 1 0 0 0 2 1 0 1 0 0 0 13 0 1582.8104 Q9BWJ5 Q9BWJ5 5 17 SF3B5 Splicing factor 3B subunit 5 yes yes 2;3 3.0947E-12 184.44 By MS/MS By MS/MS 9.67 0.471 2 4 2 4 104300000 0 21244000 83060000 15972 1925 16736 69757;69758;69759;69760;69761;69762 58766;58767;58768;58769;58770 58768 5 0 107480000 86973000 YTLNVLEDLGDGQK NQTLTLALVWQLMRRYTLNVLEDLGDGQKA RYTLNVLEDLGDGQKANDDIIVNWVNRTLS R Y T Q K A 0 0 1 2 0 1 1 2 0 0 3 1 0 0 0 0 1 0 1 1 0 0 14 0 1563.7781 P13797 P13797 505 518 PLS3 Plastin-3 yes yes 2 4.6145E-17 186.74 By MS/MS 3 0 1 1 6547500 0 0 6547500 15973 551 16737 69763 58771 58771 1 0 0 1269900 YTLTLLAQDQGLQPLSAK MLLTNATLDREQWPKYTLTLLAQDQGLQPL TLLAQDQGLQPLSAKKQLSIQISDINDNAP K Y T A K K 2 0 0 1 0 3 0 1 0 0 5 1 0 0 1 1 2 0 1 0 0 0 18 0 1959.0677 Q9NPG4 Q9NPG4 426 443 PCDH12 Protocadherin-12 yes yes 2 0.0014897 80.979 By matching By MS/MS By MS/MS 1.6 0.49 2 3 1 2 2 7015100 262170 3807300 2945700 15974 2028 16738 69764;69765;69766;69767;69768 58772;58773;58774;58775 58773 3 315880 1752600 649410 YTPLKENWMK SGKEETRKIPVPANRYTPLKENWMKIFTPI VPANRYTPLKENWMKIFTPIVEHLGLQIRF R Y T M K I 0 0 1 0 0 0 1 0 0 0 1 2 1 0 1 0 1 1 1 0 0 0 10 1 1308.6536 Q9NRX1 Q9NRX1 85 94 PNO1 RNA-binding protein PNO1 yes yes 3 0.0013764 95.775 By MS/MS By matching 6 0 2 1 1 11289000 0 6385700 4903000 15975 2047 16739 69769;69770 58776 58776 1 0 2210500 733540 YTPSGQAGAAASESLFVSNHAY YVKRALANSLACQGKYTPSGQAGAAASESL GAAASESLFVSNHAY_______________ K Y T A Y - 5 0 1 0 0 1 1 2 1 0 1 0 0 1 1 4 1 0 2 1 0 0 22 0 2227.0182 P04075 P04075 343 364 ALDOA Fructose-bisphosphate aldolase A yes yes 2;3 2.2926E-128 264.92 By MS/MS By MS/MS By MS/MS 5.17 0.687 1 3 2 3 2 1 90169000 79971000 3724700 6472900 15976 409 16740 69771;69772;69773;69774;69775;69776 58777;58778;58779;58780;58781 58777 5 63920000 1289400 902860 YTPSQQGVAFNSGAK PVRAADKLAPAQYIRYTPSQQGVAFNSGAK YTPSQQGVAFNSGAKQRVIRMVEMQKDPME R Y T A K Q 2 0 1 0 0 2 0 2 0 0 0 1 0 1 1 2 1 0 1 1 0 0 15 0 1553.7474 Q13573 Q13573 179 193 SNW1 SNW domain-containing protein 1 yes yes 2 0.00029245 133.79 By MS/MS By MS/MS 3.75 0.829 2 1 1 3 1 66949000 0 40798000 26151000 15977 1259 16741 69777;69778;69779;69780 58782;58783;58784 58782 3 0 15926000 5072000 YTPVQQGPVGVNVTYGGDPIPK DVDIIDHHDNTYTVKYTPVQQGPVGVNVTY PVGVNVTYGGDPIPKSPFSVAVSPSLDLSK K Y T P K S 0 0 1 1 0 2 0 4 0 1 0 1 0 0 4 0 2 0 2 4 0 0 22 0 2285.1692 P21333 P21333 937 958 FLNA Filamin-A yes yes 2 1.9984E-24 173.28 By MS/MS By MS/MS 1.33 0.471 2 1 1 2 30081000 0 15270000 14811000 15978 623 16742 69781;69782;69783 58785;58786 58785 2 0 7463900 3215800 YTRPGLPTFSQEVLHK RKVLQDLVPDDRKLKYTRPGLPTFSQEVLH TRPGLPTFSQEVLHKWKTDIKKYHRIQCPN K Y T H K W 0 1 0 0 0 1 1 1 1 0 2 1 0 1 2 1 2 0 1 1 0 0 16 1 1871.9894 Q96ME7 Q96ME7 380 395 ZNF512 Zinc finger protein 512 yes yes 3 0.0019159 75.018 By MS/MS 4 0.816 1 1 1 3 24321000 0 0 24321000 15979 1809 16743 69784;69785;69786 58787;58788 58787 2 0 0 4234200 YTRPPNTSLFIR ______________________________ MSRYTRPPNTSLFIRNVADATRPEDLRREF R Y T I R N 0 2 1 0 0 0 0 0 0 1 1 0 0 1 2 1 2 0 1 0 0 0 12 1 1463.7885 Q8WXF0 Q8WXF0 4 15 SRSF12 Serine/arginine-rich splicing factor 12 yes yes 3 0.00027802 115.8 By MS/MS By matching 5.33 0.943 1 2 2 1 39165000 0 31383000 7782400 15980 1694 16744 69787;69788;69789 58789 58789 1 0 10535000 1164300 YTSLMLR ESGQLISCSMDDTVRYTSLMLRDYSGQGVV CSMDDTVRYTSLMLRDYSGQGVVKLDVQPK R Y T L R D 0 1 0 0 0 0 0 0 0 0 2 0 1 0 0 1 1 0 1 0 0 0 7 0 882.46332 O75083 O75083 390 396 WDR1 WD repeat-containing protein 1 yes yes 2 0.0027018 137.44 By MS/MS 4 0 1 1 10082000 0 10082000 0 15981 241 16745 69790 58790 58790 1 0 3345800 0 YTVPGYR SAILSQADARQVVLKYTVPGYRNSLEFFTV DARQVVLKYTVPGYRNSLEFFTVLAQRRGM K Y T Y R N 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 2 1 0 0 7 0 854.42865 Q9BVP2 Q9BVP2 353 359 GNL3 Guanine nucleotide-binding protein-like 3 yes yes 2 0.041132 82.263 By MS/MS 4 0 1 1 4816700 0 4816700 0 15982 1917 16746 69791 58791 58791 1 0 1598500 0 YTVQDESHSEWVSCVR RDKTIKLWNTLGVCKYTVQDESHSEWVSCV TVQDESHSEWVSCVRFSPNSSNPIIVSCGW K Y T V R F 0 1 0 1 1 1 2 0 1 0 0 0 0 0 0 3 1 1 1 3 0 0 16 0 1980.8636 P63244 P63244 140 155 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed yes yes 2 1.6805E-74 245.69 By MS/MS 6 0 1 1 7327600 0 0 7327600 15983 1068 16747 69792 58792 58792 1 0 0 1096300 YVASYLLAALGGNSSPSAK ______________________________ YLLAALGGNSSPSAKDIKKILDSVGIEADD R Y V A K D 4 0 1 0 0 0 0 2 0 0 3 1 0 0 1 4 0 0 2 1 0 0 19 0 1867.968 P05387 P05387 3 21 RPLP2 60S acidic ribosomal protein P2 yes yes 2;3 2.4088E-96 252.08 By MS/MS By MS/MS By MS/MS 8.37 1.18 1 4 5 5 4 2 9 8 1628700000 24509000 332660000 1271500000 15984 431 16748 69793;69794;69795;69796;69797;69798;69799;69800;69801;69802;69803;69804;69805;69806;69807;69808;69809;69810;69811 58793;58794;58795;58796;58797;58798;58799;58800;58801;58802;58803;58804;58805;58806;58807;58808;58809;58810;58811 58807 19 14176000 232680000 364900000 YVATLGVEVHPLVFHTNR TTFVKRHLTGEFEKKYVATLGVEVHPLVFH TLGVEVHPLVFHTNRGPIKFNVWDTAGQEK K Y V N R G 1 1 1 0 0 0 1 1 2 0 2 0 0 1 1 0 2 0 1 4 0 0 18 0 2051.0952 P62826 P62826 39 56 RAN GTP-binding nuclear protein Ran yes yes 2;3;4 2.5691E-261 331.1 By matching By MS/MS 6.25 0.661 1 4 3 1 7 235170000 0 1190400 233980000 15985 1035 16749 69812;69813;69814;69815;69816;69817;69818;69819 58812;58813;58814;58815;58816;58817 58817 6 0 412090 40159000 YVDIAIPCNNK NLPTIALCNTDSPLRYVDIAIPCNNKGAHS SPLRYVDIAIPCNNKGAHSVGLMWWMLARE R Y V N K G 1 0 2 1 1 0 0 0 0 2 0 1 0 0 1 0 0 0 1 1 0 0 11 0 1305.6387 P08865 P08865 156 166 RPSA 40S ribosomal protein SA yes yes 2 1.3251E-09 119.21 By MS/MS 6 0 1 1 0 0 0 0 15986 480 16750 69820 58818 58818 1 0 0 0 YVDSEGHLYTVPIR ______________________________ KYVDSEGHLYTVPIREQGNIYKPNNKAMAD K Y V I R E 0 1 0 1 0 0 1 1 1 1 1 0 0 0 1 1 1 0 2 2 0 0 14 0 1647.8257 Q03135 Q03135 6 19 CAV1 Caveolin-1 yes yes 2;3 0.00044664 121.08 By MS/MS 7 0 2 2 23831000 0 0 23831000 15987 1155 16751 69821;69822 58819;58820 58820 2 0 0 4228700 YVDVLNPSGTQR PVNMYSRRAAGTRARYVDVLNPSGTQRSEP RARYVDVLNPSGTQRSEPALAPADFVAPLA R Y V Q R S 0 1 1 1 0 1 0 1 0 0 1 0 0 0 1 1 1 0 1 2 0 0 12 0 1347.6783 O15027 O15027 2193 2204 SEC16A Protein transport protein Sec16A yes yes 2 0.0066909 99.568 By MS/MS By matching 1.5 0.5 1 1 1 1 10375000 0 6182500 4192100 15988 161 16752 69823;69824 58821 58821 1 0 3021900 947330 YVELFLNSTAGASGGAYEHR AVAAMSKDKANMQHRYVELFLNSTAGASGG LNSTAGASGGAYEHRYVELFLNSTAGASGG R Y V H R Y 3 1 1 0 0 0 2 3 1 0 2 0 0 1 0 2 1 0 2 1 0 0 20 0 2141.0178 P31943 P31943 356 375 HNRNPH1 Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed yes yes 2;3 2.3339E-22 179.1 By MS/MS By MS/MS 5.33 1.05 2 4 1 2 5 4 160630000 0 86060000 74571000 15989 722 16753 69825;69826;69827;69828;69829;69830;69831;69832;69833 58822;58823;58824;58825;58826;58827;58828;58829;58830;58831;58832;58833;58834 58824 13 0 24343000 11198000 YVFTDISYSIPHR VLAEDKILEGTETTKYVFTDISYSIPHRER TKYVFTDISYSIPHRERFIVVREPSGTLRK K Y V H R E 0 1 0 1 0 0 0 0 1 2 0 0 0 1 1 2 1 0 2 1 0 0 13 0 1596.7936 P82650 P82650 156 168 MRPS22 28S ribosomal protein S22, mitochondrial yes yes 2;3 7.7352E-05 123.84 By MS/MS By MS/MS 5.5 0.764 1 1 4 4 2 29866000 0 12198000 17668000 15990 1096 16754 69834;69835;69836;69837;69838;69839 58835;58836;58837 58836 3 0 4048500 2643300 YVGGQEHFAHLLILR TTYLNVQRENGTISRYVGGQEHFAHLLILR YVGGQEHFAHLLILRDTKTYMLAFDVNDEK R Y V L R D 1 1 0 0 0 1 1 2 2 1 3 0 0 1 0 0 0 0 1 1 0 0 15 0 1751.9471 P02763 P02763 109 123 ORM1 Alpha-1-acid glycoprotein 1 yes yes 3 0.00026896 94.728 By MS/MS 9 0 1 1 56100000 56100000 0 0 15991 394 16755 69840 58838 58838 1 31489000 0 0 YVGVSSDSVGGFR RLREERKKAKKNKDKYVGVSSDSVGGFRYS DKYVGVSSDSVGGFRYSERYDPEPKSKWDE K Y V F R Y 0 1 0 1 0 0 0 3 0 0 0 0 0 1 0 3 0 0 1 3 0 0 13 0 1328.6361 Q14677 Q14677 159 171 CLINT1 Clathrin interactor 1 yes yes 2 0.0002845 134.68 By MS/MS By MS/MS 3.33 0.471 2 1 2 1 17880000 0 7447400 10432000 15992 1311 16756 69841;69842;69843 58839;58840 58839 2 0 3036500 2023400 YVGWTMHDK MKMYSDAFLNDSYLKYVGWTMHDKQGEVRL NDSYLKYVGWTMHDKQGEVRLKCLTALQGL K Y V D K Q 0 0 0 1 0 0 0 1 1 0 0 1 1 0 0 0 1 1 1 1 0 0 9 0 1135.5121 Q8N3U4 Q8N3U4 331 339 STAG2 Cohesin subunit SA-2 yes yes 2 0.062506 67.897 By MS/MS 1.5 0.5 1 1 2 21924000 0 0 21924000 15993 1603 16757 69844;69845 58841 58841 1 0 0 4828400 YVHLFPK GELIRMPKMGKTIHKYVHLFPKLELSVHLQ KMGKTIHKYVHLFPKLELSVHLQPITRSTL K Y V P K L 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 0 0 0 1 1 0 0 7 0 902.50142 O75643 O75643 1177 1183 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase yes yes 2 0.043058 80.377 By MS/MS 1 0 1 1 29138000 0 29138000 0 15994 277 16758 69846 58842 58842 1 0 14242000 0 YVIHTVGPIAYGEPSASQAAELR TGKAKITGGYRLPAKYVIHTVGPIAYGEPS IAYGEPSASQAAELRSCYLSSLDLLLEHRL K Y V L R S 4 1 0 0 0 1 2 2 1 2 1 0 0 0 2 2 1 0 2 2 0 0 23 0 2428.2387 Q9BQ69 Q9BQ69 222 244 MACROD1 O-acetyl-ADP-ribose deacetylase MACROD1 yes yes 3 6.7818E-25 170.14 By matching By MS/MS 7 0 2 1 1 17053000 0 1565300 15488000 15995 1879 16759 69847;69848 58843 58843 1 0 898810 2748300 YVIYIER KGQQIGKVVQVYRKKYVIYIERVQREKANG VVQVYRKKYVIYIERVQREKANGTTVHVGI K Y V E R V 0 1 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 2 1 0 0 7 0 954.51747 P61254;Q9UNX3 P61254 78 84 RPL26;RPL26L1 60S ribosomal protein L26;60S ribosomal protein L26-like 1 yes no 2 0.0087019 122.78 By MS/MS By MS/MS By MS/MS 6.33 0.745 1 2 3 1 3 2 185880000 5368000 29812000 150700000 15996 989 16760 69849;69850;69851;69852;69853;69854 58844;58845;58846;58847 58845 3 11569000 16255000 26569000 YVKPTEPVTDYR RVSIVNQYGKCVYDKYVKPTEPVTDYRTAV YDKYVKPTEPVTDYRTAVSGIRPENLKQGE K Y V Y R T 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 0 2 0 2 2 0 0 12 1 1466.7405 Q9GZR2 Q9GZR2 279 290 REXO4 RNA exonuclease 4 yes yes 2;3 0.0013337 109.29 By MS/MS By MS/MS 4.25 0.433 3 1 1 3 61344000 0 12702000 48642000 15997 1951 16761 69855;69856;69857;69858 58848;58849;58850 58849 3 0 4215300 7787700 YVLENHPGTNSNYQMHLLK AMNEPKTCSTTALKKYVLENHPGTNSNYQM NHPGTNSNYQMHLLKKTLQKCEKNGWMEQI K Y V L K K 0 0 3 0 0 1 1 1 2 0 3 1 1 0 1 1 1 0 2 1 0 0 19 0 2257.095 Q5SSJ5 Q5SSJ5 367 385 HP1BP3 Heterochromatin protein 1-binding protein 3 yes yes 2;3;4 1.0575E-09 155.57 By MS/MS By MS/MS 4.22 1.4 4 2 1 1 1 2 7 229760000 0 22669000 207100000 15998 1445 16762 69859;69860;69861;69862;69863;69864;69865;69866;69867 58851;58852;58853;58854 58854 4 0 9352700 39570000 YVLGMQELFR GSMAPWCSVSSGPSRYVLGMQELFRGHSKT SGPSRYVLGMQELFRGHSKTREFLAHSAKV R Y V F R G 0 1 0 0 0 1 1 1 0 0 2 0 1 1 0 0 0 0 1 1 0 0 10 0 1254.6431 Q96J01 Q96J01 34 43 THOC3 THO complex subunit 3 yes yes 2 1.0627E-10 163.99 By matching By MS/MS By MS/MS 5.25 0.829 1 1 2 1 1 2 32579000 1689000 4731400 26159000 15999 1800 16763 69868;69869;69870;69871 58855;58856;58857 58856 3 1317700 1637900 3761300 YVLINWVGEDVPDAR YGFCSVKDSQAALPKYVLINWVGEDVPDAR YVLINWVGEDVPDARKCACASHVAKVAEFF K Y V A R K 1 1 1 2 0 0 1 1 0 1 1 0 0 0 1 0 0 1 1 3 0 0 15 0 1744.8784 Q16643 Q16643 80 94 DBN1 Drebrin yes yes 2 0.00029129 122.7 By matching By MS/MS 2.33 0.471 2 1 1 2 28633000 1069300 0 27563000 16000 1395 16764 69872;69873;69874 58858;58859 58858 2 1288400 0 6016800 YVLINWVGEDVPDARK YGFCSVKDSQAALPKYVLINWVGEDVPDAR VLINWVGEDVPDARKCACASHVAKVAEFFQ K Y V R K C 1 1 1 2 0 0 1 1 0 1 1 1 0 0 1 0 0 1 1 3 0 0 16 1 1872.9734 Q16643 Q16643 80 95 DBN1 Drebrin yes yes 3 0.032028 41.912 By MS/MS 1.5 0.5 1 1 2 3129300 0 3129300 0 16001 1395 16765 69875;69876 58860 58860 1 0 1453600 0 YVMGNNPADLLAVDSR VATDLDTGRPSTTVRYVMGNNPADLLAVDS VMGNNPADLLAVDSRTGKLTLKNKVTKEQY R Y V S R T 2 1 2 2 0 0 0 1 0 0 2 0 1 0 1 1 0 0 1 2 0 0 16 0 1733.8407 Q02413 Q02413 423 438 DSG1 Desmoglein-1 yes yes 2 1.3853E-12 179.35 By MS/MS By MS/MS By MS/MS 6.5 3.03 2 1 2 1 2 2 2 2 3 5 17 2 3 140060000 127230000 769690 12068000 16002 1146 16766;16767 69877;69878;69879;69880;69881;69882;69883;69884;69885;69886;69887;69888;69889;69890;69891;69892;69893;69894;69895;69896;69897;69898 58861;58862;58863;58864;58865;58866;58867;58868;58869;58870;58871;58872;58873;58874;58875;58876;58877;58878;58879;58880;58881;58882;58883 58864 551 23 128810000 3894000 5770500 YVMTTTTLER TENMPIKINLIAPPRYVMTTTTLERTEGLS IAPPRYVMTTTTLERTEGLSVLSQAMAVIK R Y V E R T 0 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 4 0 1 1 0 0 10 0 1213.6013 P05198 P05198 235 244 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 yes yes 2 1.0047E-10 164.57 By MS/MS By MS/MS By MS/MS 6 1.29 1 2 6 1 2 1 5 6 394630000 9066000 130190000 255370000 16003 428 16768;16769 69899;69900;69901;69902;69903;69904;69905;69906;69907;69908;69909;69910 58884;58885;58886;58887;58888;58889;58890;58891;58892;58893 58890 153 10 12071000 45100000 38046000 YVQELAAVR GRQFLEVELDQAREKYVQELAAVRADAETR DQAREKYVQELAAVRADAETRLAEVQREAQ K Y V V R A 2 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 9 0 1047.5713 Q14980 Q14980 1476 1484 NUMA1 Nuclear mitotic apparatus protein 1 yes yes 2 0.0054438 96.253 By MS/MS By MS/MS By MS/MS 1.25 0.433 3 1 1 1 2 88352000 4743600 20244000 63364000 16004 1327 16770 69911;69912;69913;69914 58894;58895;58896 58894 3 4743600 9894800 13673000 YVQLPADEVDTQLLQDAAR MLSVKNCFIRGSVVRYVQLPADEVDTQLLQ PADEVDTQLLQDAARKEALQQKQ_______ R Y V A R K 3 1 0 3 0 3 1 0 0 0 3 0 0 0 1 0 1 0 1 2 0 0 19 0 2144.075 Q9Y333 Q9Y333 69 87 LSM2 U6 snRNA-associated Sm-like protein LSm2 yes yes 2;3 5.8853E-14 174.39 By MS/MS By MS/MS 9.67 0.471 2 4 2 4 86680000 0 8343400 78337000 16005 2258 16771 69915;69916;69917;69918;69919;69920 58897;58898;58899;58900;58901 58899 5 0 42211000 51394000 YVTSAPMPEPQAPGR FVQWMQRGQPLSPEKYVTSAPMPEPQAPGR YVTSAPMPEPQAPGRYFAHSILTVSEEEWN K Y V G R Y 2 1 0 0 0 1 1 1 0 0 0 0 1 0 4 1 1 0 1 1 0 0 15 0 1599.7715 P01871;P0DOX6 P01871 377 391 IGHM Ig mu chain C region yes no 2 0.00033325 134.2 By MS/MS 9.5 0.5 1 1 2 22099000 22099000 0 0 16006 385 16772 69921;69922 58902;58903 58902 2 17505000 0 0 YVVFYNNWVYLQNR Y V N R 0 1 3 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 3 3 0 0 14 0 1876.9261 REV__O94910 yes yes 3 0.067702 35.737 By MS/MS By matching 7.25 0.433 3 1 2 2 215470000 0 40178000 175290000 + 16007 2325 16773 69923;69924;69925;69926 58904 58904 1 0 23071000 31007000 YVVVTGITPTPLGEGK LLSALERLKHRPDGKYVVVTGITPTPLGEG VVVTGITPTPLGEGKSTTTIGLVQALGAHL K Y V G K S 0 0 0 0 0 0 1 3 0 1 1 1 0 0 2 0 3 0 1 3 0 0 16 0 1629.8978 P11586 P11586 371 386 MTHFD1 C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed yes yes 2 3.5941E-05 122.55 By MS/MS By MS/MS 2 0 2 1 1 16795000 0 7457100 9338200 16008 528 16774 69927;69928 58905;58906 58906 2 0 3358000 2110200 YWDLMNLSEK LELEMGDDYILDLQKYWDLMNLSEKHDKIP LDLQKYWDLMNLSEKHDKIPEIWEGHNIAD K Y W E K H 0 0 1 1 0 0 1 0 0 0 2 1 1 0 0 1 0 1 1 0 0 0 10 0 1297.6013 Q9BZE4 Q9BZE4 416 425 GTPBP4 Nucleolar GTP-binding protein 1 yes yes 2 0.0038429 100.76 By MS/MS By MS/MS 3 0.707 1 2 1 1 3 26772000 0 1728100 25044000 16009 1941 16775 69929;69930;69931;69932 58907;58908 58908 2 0 736690 4864500 YWDVPPPGFEHITPMQYK LIRSPRHEKKKKVRKYWDVPPPGFEHITPM VPPPGFEHITPMQYKAMQAAGQIPATALLP K Y W Y K A 0 0 0 1 0 1 1 1 1 1 0 1 1 1 4 0 1 1 2 1 0 0 18 0 2204.0401 P26368 P26368 91 108 U2AF2 Splicing factor U2AF 65 kDa subunit yes yes 3 6.763E-05 96.208 By MS/MS By MS/MS 4.33 0.471 2 1 2 1 25649000 0 7186800 18462000 16010 668 16776 69933;69934;69935 58909;58910 58910 1 0 2295300 3015500 YWEMMPPTILIDLLK VRSTGILGVCKITSKYWEMMPPTILIDLLK YWEMMPPTILIDLLKKVTGELAFDTSSADV K Y W L K K 0 0 0 1 0 0 1 0 0 2 3 1 2 0 2 0 1 1 1 0 0 0 15 0 1861.9722 Q86XI2 Q86XI2 407 421 NCAPG2 Condensin-2 complex subunit G2 yes yes 2 0.038587 62.924 By MS/MS 2.5 0.5 1 1 2 2529500 0 0 2529500 16011 1558 16777 69936;69937 58911 58911 1 0 0 567190 YWIDIQLR LADSKDVMDSTTTQKYWIDIQLRWGDYDSH DSTTTQKYWIDIQLRWGDYDSHDIERYARA K Y W L R W 0 1 0 1 0 1 0 0 0 2 1 0 0 0 0 0 0 1 1 0 0 0 8 0 1105.592 Q6P2Q9 Q6P2Q9 1660 1667 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.001517 114.72 By MS/MS 1 0 1 1 6026400 0 0 6026400 16012 1490 16778 69938 58912 58912 1 0 0 1298500 YWLFSDEVPGLFIEK VMRRTPIGTDRNHNRYWLFSDEVPGLFIEK YWLFSDEVPGLFIEKGWVHDSIDYRFNHHC R Y W E K G 0 0 0 1 0 0 2 1 0 1 2 1 0 2 1 1 0 1 1 1 0 0 15 0 1841.924 Q9UIG0 Q9UIG0 912 926 BAZ1B Tyrosine-protein kinase BAZ1B yes yes 2 0.00056197 107.09 By MS/MS 1.5 0.5 1 1 2 9781000 0 0 9781000 16013 2164 16779 69939;69940 58913;58914 58914 2 0 0 2153300 YWSQQIEESTTVVTTQSAEVGAAETTLTELRR QYDELARKNREELDKYWSQQIEESTTVVTT AEVGAAETTLTELRRTVQSLEIDLDSMRNL K Y W R R T 3 2 0 0 0 3 5 1 0 1 2 0 0 0 0 3 7 1 1 3 0 0 32 1 3583.7642 P05783 P05783 270 301 KRT18 Keratin, type I cytoskeletal 18 yes yes 3 3.9245E-20 97.063 By MS/MS 4.5 0.5 1 1 2 5299500 0 0 5299500 16014 436 16780 69941;69942 58915 58915 1 0 0 822550 YYAVNFPMR PGTGDLRDIGAGKGKYYAVNFPMRDGIDDE GAGKGKYYAVNFPMRDGIDDESYGQIFKPI K Y Y M R D 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 2 1 0 0 9 0 1159.5485 Q92769 Q92769 222 230 HDAC2 Histone deacetylase 2 yes yes 2 0.00042334 124.37 By MS/MS By MS/MS 4.17 1.07 2 2 1 1 2 4 22686000 0 10280000 12406000 16015 1721 16781 69943;69944;69945;69946;69947;69948 58916;58917;58918 58917 3 0 3527200 2043200 YYAVNYPLR PGTGDLRDIGAGKGKYYAVNYPLRDGIDDE GAGKGKYYAVNYPLRDGIDDESYEAIFKPV K Y Y L R D 1 1 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 3 1 0 0 9 0 1157.5869 Q13547 Q13547 221 229 HDAC1 Histone deacetylase 1 yes yes 2 0.00036838 121.29 By matching By MS/MS By MS/MS 3.83 0.687 2 3 1 2 2 2 61945000 6762800 16094000 39088000 16016 1257 16782 69949;69950;69951;69952;69953;69954 58919;58920;58921 58920 3 7093300 5155600 6796800 YYDSRPGGYGYGYGR SYSRGGGDQGYGSGRYYDSRPGGYGYGYGR YYDSRPGGYGYGYGRSRDYNGRNQGGYDRY R Y Y G R S 0 2 0 1 0 0 0 5 0 0 0 0 0 0 1 1 0 0 5 0 0 0 15 1 1729.7485 P98179 P98179 117 131 RBM3 RNA-binding protein 3 yes yes 2;3 4.8847E-89 257.8 By MS/MS By MS/MS 7.67 1.07 2 5 5 2 1 10 5 565620000 0 425020000 140600000 16017 1118 16783 69955;69956;69957;69958;69959;69960;69961;69962;69963;69964;69965;69966;69967;69968;69969 58922;58923;58924;58925;58926;58927;58928;58929;58930;58931;58932;58933;58934;58935;58936 58925 15 0 211850000 22894000 YYEAADTVTQFDNVR ______________________________ YYEAADTVTQFDNVRLWLGKNYKKYIQAEP K Y Y V R L 2 1 1 2 0 1 1 0 0 0 0 0 0 1 0 0 2 0 2 2 0 0 15 0 1790.8111 Q8TAQ2 Q8TAQ2 14 28 SMARCC2 SWI/SNF complex subunit SMARCC2 yes yes 2 1.7622E-34 210.98 By MS/MS 2 0 1 1 13696000 0 0 13696000 16018 1653 16784 69970 58937 58937 1 0 0 3094900 YYEGYYAAGPGYGGR LQPEPGYGYAPNQGRYYEGYYAAGPGYGGR YYEGYYAAGPGYGGRNDSDPTYGQQGHPNT R Y Y G R N 2 1 0 0 0 0 1 5 0 0 0 0 0 0 1 0 0 0 5 0 0 0 15 0 1642.7052 Q93052 Q93052 296 310 LPP Lipoma-preferred partner yes yes 2 0.0025399 88.681 By MS/MS 3 0 1 1 4397300 0 0 4397300 16019 1739 16785 69971 58938 58938 1 0 0 852880 YYGGGSEGGR MVKMAAAGGGGGGGRYYGGGSEGGRAPKRL GGGGRYYGGGSEGGRAPKRLKTDNAGDQHG R Y Y G R A 0 1 0 0 0 0 1 5 0 0 0 0 0 0 0 1 0 0 2 0 0 0 10 0 1001.4203 P14866 P14866 47 56 HNRNPL Heterogeneous nuclear ribonucleoprotein L yes yes 2 0.011833 87.639 By MS/MS 3.5 1.12 1 1 1 1 4 3518800 0 3518800 0 16020 565 16786 69972;69973;69974;69975 58939 58939 1 0 1378700 0 YYGINDPVADK TDPDDPLADQNIKDRYYGINDPVADKLLKR IKDRYYGINDPVADKLLKRASTMPRLDPPE R Y Y D K L 1 0 1 2 0 0 0 1 0 1 0 1 0 0 1 0 0 0 2 1 0 0 11 0 1253.5928 Q9NW64 Q9NW64 202 212 RBM22 Pre-mRNA-splicing factor RBM22 yes yes 2 0.0046982 102.06 By MS/MS By MS/MS 4.5 0.5 1 1 1 1 14613000 0 4809700 9802900 16021 2076 16787 69976;69977 58940;58941 58940 2 0 1239800 1601100 YYGQNGQQILSASQDGTLQSFSTVHEK LRFRMGHSAPLTNIRYYGQNGQQILSASQD SQDGTLQSFSTVHEKFNKSLGHGLINKKRV R Y Y E K F 1 0 1 1 0 5 1 3 1 1 2 1 0 1 0 4 2 0 2 1 0 0 27 0 2985.4104 Q8NI36 Q8NI36 387 413 WDR36 WD repeat-containing protein 36 yes yes 3 4.8005E-73 214.44 By MS/MS By matching 2 0.816 1 1 1 2 1 11098000 0 8183700 2914600 16022 1648 16788 69978;69979;69980 58942 58942 1 0 3725300 565290 YYGYTGAFR DEQGENKCVPNSNERYYGYTGAFRCLAENA PNSNERYYGYTGAFRCLAENAGDVAFVKDV R Y Y F R C 1 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0 1 0 3 0 0 0 9 0 1096.4978 P02788;CON__Q29443;CON__Q0IIK2 P02788 544 552 LTF Lactotransferrin;Lactoferricin-H;Kaliocin-1;Lactoferroxin-A;Lactoferroxin-B;Lactoferroxin-C no no 2 9.5367E-05 143.11 By MS/MS By MS/MS By MS/MS 5.73 3.23 1 2 2 2 1 1 1 1 4 8 5 2 531300000 487390000 28813000 15096000 + 16023 400;74 16789 69981;69982;69983;69984;69985;69986;69987;69988;69989;69990;69991;69992;69993;69994;69995 58943;58944;58945;58946;58947;58948;58949;58950;58951;58952 58951 10 603510000 52775000 5925400 YYIAASYVK LMQKCRNKVMKNYGRYYIAASYVKYLESAG MKNYGRYYIAASYVKYLESAGARVVPVRLD R Y Y V K Y 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 3 1 0 0 9 0 1076.5542 Q92820 Q92820 54 62 GGH Gamma-glutamyl hydrolase yes yes 2 0.019656 82.452 By MS/MS By matching 9.25 0.829 1 1 2 3 1 14111000 11296000 0 2814700 16024 1724 16790 69996;69997;69998;69999 58953 58953 1 12306000 0 6155900 YYITIIDAPGHR GITIDISLWKFETTKYYITIIDAPGHRDFI TTKYYITIIDAPGHRDFIKNMITGTSQADC K Y Y H R D 1 1 0 1 0 0 0 1 1 3 0 0 0 0 1 0 1 0 2 0 0 0 12 0 1417.7354 Q05639 Q05639 85 96 EEF1A2 Elongation factor 1-alpha 2 yes yes 3 0.0080226 74.76 By MS/MS 4 0 1 1 3948100 0 0 3948100 16025 1165 16791 70000 58954 58954 1 0 0 644860 YYKNIGLGFK KRVLLGETGKEKLPRYYKNIGLGFKTPKEA EKLPRYYKNIGLGFKTPKEAIEGTYIDKKC R Y Y F K T 0 0 1 0 0 0 0 2 0 1 1 2 0 1 0 0 0 0 2 0 0 0 10 1 1201.6495 P62280 P62280 36 45 RPS11 40S ribosomal protein S11 yes yes 3 0.065234 46.334 By matching By MS/MS 7 0 2 1 1 4557600 0 1503600 3054000 16026 1017 16792 70001;70002 58955 58955 1 0 863370 541910 YYLHDDREGEGSDK REEEWDPEYTPKSKKYYLHDDREGEGSDKW KYYLHDDREGEGSDKWVSRGRGRGAFPRGR K Y Y D K W 0 1 0 3 0 0 2 2 1 0 1 1 0 0 0 1 0 0 2 0 0 0 14 1 1682.7172 Q9Y2W1 Q9Y2W1 880 893 THRAP3 Thyroid hormone receptor-associated protein 3 yes yes 3 0.02233 56.139 By MS/MS 1.5 0.5 1 1 2 4257400 0 0 4257400 16027 2252 16793 70003;70004 58956 58956 1 0 0 930880 YYNDYGDIIK VEMNTAADIFKQYMKYYNDYGDIIKETMSK KQYMKYYNDYGDIIKETMSKTRQIDKIQCA K Y Y I K E 0 0 1 2 0 0 0 1 0 2 0 1 0 0 0 0 0 0 3 0 0 0 10 0 1262.5819 Q8N3U4;Q8WVM7 Q8N3U4 892 901 STAG2;STAG1 Cohesin subunit SA-2;Cohesin subunit SA-1 yes no 2 0.015297 85.676 By MS/MS 2 0.816 1 1 1 3 52111000 0 0 52111000 16028 1603 16794 70005;70006;70007 58957;58958 58958 2 0 0 11475000 YYNKVPVEK EYVVEFDFLGKDSIRYYNKVPVEKRVFKNL GKDSIRYYNKVPVEKRVFKNLQLFMENKQP R Y Y E K R 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 2 2 0 0 9 1 1138.6023 P11387 P11387 537 545 TOP1 DNA topoisomerase 1 yes yes 2 0.0033434 119.86 By matching By MS/MS By MS/MS 1.8 0.748 2 2 1 1 1 3 16541000 3523500 3646400 9370700 16029 523 16795 70008;70009;70010;70011;70012 58959;58960 58960 2 3523500 1642000 1916800 YYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVK DDHPGMEVVLHEDKKYYPTAEEVYGPEVET EDTQPLTEPIIKPVKTKKFTLMEQTLPVTV K Y Y V K T 1 0 0 1 0 2 7 1 0 3 1 2 0 0 5 0 4 0 3 4 0 0 34 1 3903.9557 Q15029 Q15029 65 98 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component yes yes 3;4 2.2374E-39 112.9 By MS/MS 2 0 2 2 26732000 0 0 26732000 16030 1335 16796 70013;70014 58961;58962 58961 2 0 0 6041000 YYPTEDVPR KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG LRKMPRYYPTEDVPRKLLSHGKKPFSQHVR R Y Y P R K 0 1 0 1 0 0 1 0 0 0 0 0 0 0 2 0 1 0 2 1 0 0 9 0 1138.5295 Q02878 Q02878 115 123 RPL6 60S ribosomal protein L6 yes yes 2 0.00045939 119.29 By MS/MS By MS/MS By MS/MS 4.13 2 2 2 2 2 2 3 2 1 7 7 669970000 12918000 314700000 342350000 16031 1149 16797 70015;70016;70017;70018;70019;70020;70021;70022;70023;70024;70025;70026;70027;70028;70029 58963;58964;58965;58966;58967;58968;58969;58970;58971;58972;58973;58974;58975;58976;58977 58969 15 17201000 108560000 53204000 YYPTEDVPRK KNGGTRVVKLRKMPRYYPTEDVPRKLLSHG RKMPRYYPTEDVPRKLLSHGKKPFSQHVRK R Y Y R K L 0 1 0 1 0 0 1 0 0 0 0 1 0 0 2 0 1 0 2 1 0 0 10 1 1266.6245 Q02878 Q02878 115 124 RPL6 60S ribosomal protein L6 yes yes 2;3 0.0014944 91.069 By MS/MS By MS/MS 5.6 0.49 2 3 3 2 34635000 0 21602000 13033000 16032 1149 16798 70030;70031;70032;70033;70034 58978;58979;58980;58981;58982 58982 5 0 7260100 1885500 YYSLWIPEQAR PCLVPCCQQLSRFNRYYSLWIPEQAREAWL RFNRYYSLWIPEQAREAWLLQAQGSPSPPA R Y Y A R E 1 1 0 0 0 1 1 0 0 1 1 0 0 0 1 1 0 1 2 0 0 0 11 0 1424.7089 O60287 O60287 858 868 URB1 Nucleolar pre-ribosomal-associated protein 1 yes yes 2 0.0056708 99.653 By MS/MS 1 0 1 1 2990900 0 2990900 0 16033 224 16799 70035 58983 58983 1 0 1461900 0 YYTGNYDQYVK GVCTNIIHMHNKKLKYYTGNYDQYVKTRLE KKLKYYTGNYDQYVKTRLELEENQMKRFHW K Y Y V K T 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 1 0 4 1 0 0 11 0 1412.6248 Q9UG63 Q9UG63 305 315 ABCF2 ATP-binding cassette sub-family F member 2 yes yes 2 0.06689 77.677 By MS/MS 3 0 1 1 13805000 0 0 13805000 16034 2142 16800 70036 58984 58984 0 0 0 2677500 YYTGVVNNNEMVALQR SVLFGSLRGHVVGLRYYTGVVNNNEMVALQ YTGVVNNNEMVALQRDPNNPYDKNAIKVNN R Y Y Q R D 1 1 3 0 0 1 1 1 0 0 1 0 1 0 0 0 1 0 2 3 0 0 16 0 1869.9043 Q14527 Q14527 72 87 HLTF Helicase-like transcription factor yes yes 2 3.2149E-08 164.9 By MS/MS 2 0 1 1 1771200 0 1771200 0 16035 1303 16801 70037 58985 58985 1 0 797590 0 YYTLFGR LQPGAKCVCGKNPAKYYTLFGRSY______ VCGKNPAKYYTLFGRSY_____________ K Y Y G R S 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 2 0 0 0 7 0 918.45995 P07814 P07814 1504 1510 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase yes yes 2 0.04277 55.441 By MS/MS 2 0 1 1 1782100 0 1782100 0 16036 465 16802 70038 58986 58986 0 0 802490 0 YYTPTISR AHGYGAFLTLSILDRYYTPTISRERAVELL TLSILDRYYTPTISRERAVELLRKCLEELQ R Y Y S R E 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 1 2 0 2 0 0 0 8 0 999.50255 P49721 P49721 146 153 PSMB2 Proteasome subunit beta type-2 yes yes 2 0.058239 70.919 By MS/MS By matching 7 0 2 1 1 8619700 0 3053700 5566000 16037 863 16803 70039;70040 58987 58987 1 0 1753500 987650 YYTVFDR PSGPLWILGDVFIGRYYTVFDRDNNRVGFA LGDVFIGRYYTVFDRDNNRVGFAEAARL__ R Y Y D R D 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 0 0 7 0 962.44978 P07339 P07339 393 399 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain yes yes 2 0.019593 103.29 By MS/MS By MS/MS 6.8 3.12 1 2 1 1 4 1 12932000 8791400 0 4140400 16038 458 16804 70041;70042;70043;70044;70045 58988;58989;58990 58989 3 11268000 0 734680 YYTYLIMNK NFLLRMDRAHEAKIRYYTYLIMNKGRLLKA HEAKIRYYTYLIMNKGRLLKAGRQVREPGQ R Y Y N K G 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 1 0 3 0 0 0 9 0 1207.5947 P01024 P01024 489 497 C3 Complement C3;Complement C3 beta chain;C3-beta-c;Complement C3 alpha chain;C3a anaphylatoxin;Acylation stimulating protein;Complement C3b alpha chain;Complement C3c alpha chain fragment 1;Complement C3dg fragment;Complement C3g fragment;Complement C3d fragment;Complement C3f fragment;Complement C3c alpha chain fragment 2 yes yes 2 0.028639 77.674 By MS/MS 9.5 0.5 1 1 2 16238000 16238000 0 0 16039 371 16805 70046;70047 58991 58991 1 11794000 0 0 YYVLNALK GQPVKVRVSYQKLLKYYVLNALKHRPPKAQ SYQKLLKYYVLNALKHRPPKAQKKRYLFRS K Y Y L K H 1 0 1 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 2 1 0 0 8 0 982.54877 Q6P2Q9 Q6P2Q9 453 460 PRPF8 Pre-mRNA-processing-splicing factor 8 yes yes 2 0.0039561 103.29 By matching By MS/MS By MS/MS 1 0 3 1 1 1 51768000 2468400 23342000 25958000 16040 1490 16806 70048;70049;70050 58992;58993 58992 2 2468400 11409000 5593000 YYVTIIDAPGHR GITIDISLWKFETSKYYVTIIDAPGHRDFI TSKYYVTIIDAPGHRDFIKNMITGTSQADC K Y Y H R D 1 1 0 1 0 0 0 1 1 2 0 0 0 0 1 0 1 0 2 1 0 0 12 0 1403.7197 Q5VTE0;P68104 Q5VTE0 85 96 EEF1A1P5;EEF1A1 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 yes no 2;3 3.2888E-46 226.59 By MS/MS By MS/MS By MS/MS 5.92 2.5 2 1 3 5 6 6 4 2 4 4 7 13 17 1051300000 30757000 229360000 791190000 16041 1076 16807 70051;70052;70053;70054;70055;70056;70057;70058;70059;70060;70061;70062;70063;70064;70065;70066;70067;70068;70069;70070;70071;70072;70073;70074;70075;70076;70077;70078;70079;70080;70081;70082;70083;70084;70085;70086;70087 58994;58995;58996;58997;58998;58999;59000;59001;59002;59003;59004;59005;59006;59007;59008;59009;59010;59011;59012;59013;59014;59015;59016;59017;59018;59019;59020;59021;59022;59023;59024;59025;59026;59027;59028;59029 59016 35 23836000 125010000 232530000 YYYDGKDYIEFNK GCEIENNRSSGAFWKYYYDGKDYIEFNKEI WKYYYDGKDYIEFNKEIPAWVPFDPAAQIT K Y Y N K E 0 0 1 2 0 0 1 1 0 1 0 2 0 1 0 0 0 0 4 0 0 0 13 1 1716.7672 P25311 P25311 137 149 AZGP1 Zinc-alpha-2-glycoprotein yes yes 2;3 7.1108E-05 162.93 By MS/MS 5.56 2.95 2 2 1 2 2 2 1 2 2 2 18 227890000 227890000 0 0 16042 656 16808 70088;70089;70090;70091;70092;70093;70094;70095;70096;70097;70098;70099;70100;70101;70102;70103;70104;70105 59030;59031;59032;59033;59034;59035;59036;59037;59038;59039;59040;59041 59038 11 198550000 0 0