<?xml version="1.0" encoding="ISO-8859-1"?>
<msms_pipeline_analysis summary_xml="LPVM_fr10.pep.xml" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://regis-web.systemsbiology.net/pepXML /tools/bin/TPP/tpp-ntasman/schema/pepXML_v112.xsd" date="2016-11-4T10: 8:38" >
<msms_run_summary base_name="LPVM_fr10" raw_data_type="aph" raw_data="aph">
<search_summary search_id="1" base_name="LPVM_fr10" search_engine="Spectrum Mill - MS/MS Search" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" out_data_type="n/a" out_data="n/a" >
	<enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="2" min_number_termini="2" />
	<search_database local_path="SwissProt" type="AA" />
	<parameter name="user_max_parent_shift" value="177.0" />
	<parameter name="hide_html_links" value="1" />
	<parameter name="fragment_mass_tolerance" value="50" />
	<parameter name="maxSequenceTagLengthFilterDirection" value=">" />
	<parameter name="results_to_file" value="1" />
	<parameter name="user_min_parent_shift" value="-18.0" />
	<parameter name="enable_multiple_mods" value="1" />
	<parameter name="tolerance_units_precursor" value="ppm" />
	<parameter name="search_type" value="variable" />
	<parameter name="max_reported_hits" value="5" />
	<parameter name="parent_mass_convert" value="monoisotopic" />
	<parameter name="high_pi" value="10.0" />
	<parameter name="paramFile" value="Apurva\mstag.A_iTRAQ.params" />
	<parameter name="minMatchedPercent" value="10" />
	<parameter name="batchSize" value="81" />
	<parameter name="homology_gap_mode" value="0" />
	<parameter name="varMods" value="Oxidized-Methionine" />
	<parameter name="discriminant_scoring" value="Disable (same as Score)" />
	<parameter name="instrument_nameMSMS" value="2" />
	<parameter name="tolerance_units" value="ppm" />
	<parameter name="instrument_name" value="ESI-QTOF-AGILENT" />
	<parameter name="dissociationMethod" value="ALL" />
	<parameter name="maxSequenceTagLengthFilter" value="3" />
	<parameter name="parent_shift" value="130.0" />
	<parameter name="dataDir" value="Sandeep/iTRAQ/Longitudinal/LPVM_MPVM/Fr_10" />
	<parameter name="dna_frame_translation" value="6" />
	<parameter name="enzyme" value="Trypsin" />
	<parameter name="low_pi" value="3.0" />
	<parameter name="use_instrument_ion_types" value="1" />
	<parameter name="star_ions_off" value="1" />
	<parameter name="requestScript" value="batchTagPara.pl" />
	<parameter name="input_program_name" value="mstag" />
	<parameter name="max_ms_prod_charge" value="3" />
	<parameter name="msparams_dir" value="msparams_mill/" />
	<parameter name="unknome" value="1" />
	<parameter name="full_pi_range" value="1" />
	<parameter name="min_ions_to_search" value="3" />
	<parameter name="parent_shift_type" value="+/-" />
	<parameter name="validationState" value="spectrum-not-marked-sequence-not-validated" />
	<parameter name="species" value="HOMO SAPIENS" />
	<parameter name="seqdb_dir" value="C:\SeqDB\" />
	<parameter name="database" value="SwissProt" />
	<parameter name="missed_cleavages" value="2" />
	<parameter name="parent_mass_tolerance" value="20" />
	<parameter name="fixedMods" value="carbamidomethylation iTRAQ_116" />
	<parameter name="filterByFeature" value="maxSequenceTagLength" />
	<parameter name="removeResults" value="1" />
	<parameter name="full_mw_range" value="1" />
	<parameter name="mutation_matrix_off" value="0" />
</search_summary>
