Study Info
INDA Accessions: INRP000708
INSDC Accessions: PRJEB123122, ERP203119
- Title: Whole Genome Sequencing Based Characterization of the Eukaryotic Mycobiome in Faecal Samples
- Data Type : Whole Genome Sequencing
- Descriptive Title: Whole Genome Sequencing Based Characterization of the Eukaryotic Mycobiome in Faecal Samples from Ovis aries, Capra hircus, Lactating Capra hircus and Bos taurus
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Organism:
Scientific Name(Taxon Id): Apiotrichum loubieri (82519) Common Name:
Scientific Name(Taxon Id): Arachniotus flavoluteus (1636503) Common Name:
Scientific Name(Taxon Id): Arthrographis arxii (1537659) Common Name:
Scientific Name(Taxon Id): Aspergillus austwickii (2059439) Common Name:
Scientific Name(Taxon Id): Aspergillus egyptiacus (41743) Common Name:
Scientific Name(Taxon Id): Aspergillus fumigatus (746128) Common Name:
Scientific Name(Taxon Id): Aspergillus latus (41734) Common Name:
Scientific Name(Taxon Id): Aspergillus montevidensis (1173306) Common Name:
Scientific Name(Taxon Id): Aspergillus nidulans (162425) Common Name:
Scientific Name(Taxon Id): Aspergillus quadrilineatus (41735) Common Name:
Scientific Name(Taxon Id): Aspergillus tamarii (41984) Common Name:
Scientific Name(Taxon Id): Aspergillus tennesseensis (1220210) Common Name:
Scientific Name(Taxon Id): Aspergillus terreus (33178) Common Name:
Scientific Name(Taxon Id): Aspergillus tubingensis (5068) Common Name:
Scientific Name(Taxon Id): Cladosporium endophyticum (2259870) Common Name:
Scientific Name(Taxon Id): Ephemerocybe marculenta (915347) Common Name:
Scientific Name(Taxon Id): Epicoccum thailandicum (2010948) Common Name:
Scientific Name(Taxon Id): Gymnascella dankaliensis (166389) Common Name:
Scientific Name(Taxon Id): Lichtheimia ornata (688661) Common Name:
Scientific Name(Taxon Id): Penicillium georgiense (446515) Common Name:
Scientific Name(Taxon Id): Petasospora fabianii (36022) Common Name:
Scientific Name(Taxon Id): Scedosporium apiospermum (563466) Common Name:
Scientific Name(Taxon Id): Scopulariopsis brevicaulis (561152) Common Name:
Other Info
- Abstract: This study investigates fungal isolates obtained from faecal samples of Ovis aries, lactating Capra hircus, and kids Capra hircus. Using a whole-genome sequencing approach targeting eukaryotic organisms, the research aims to characterize the fungal community composition, identify functional gene repertoires, and evaluate their metabolic potential. Emphasis is placed on the analysis of functional pathways and biomolecules to elucidate functional capabilities and ecological roles of the fungal populations present in these hosts.
- Linked publications:
- Center Name: Rakesh Tiwari, Purva Gohil, Tejas Shah, Nimesh Patel, Priyank Chavda, Minal Bhure, Chitra Nehra, Fenil Parmar, Devanshi Patel, Pranitha Pandit, Niteen Patil, Ashutosh Patel, Subhash Kachhawaha, Ram Kumawat, Snehal Bagatharia, Madhvi Joshi, Chaitanya Joshi, Ramesh Pandit, Gujarat Biotechnology Research Centre
- Number of Base(Total) Mbp: 33,329,981,289
- Size in bytes(Total): 19,654,161,130
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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