Study Info
INDA Accessions: INRP000616
INSDC Accessions: PRJNA633006, SRP261762
- Title: WGS of A. thaliana seedlings
- Data Type : Whole Genome Sequencing
- Descriptive Title: Indian Himalayan Arabidopsis thaliana population reflect deep history and source of eastern edge of the species range
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Organism:
Scientific Name(Taxon Id): Arabidopsis thaliana (3702) Common Name:
Scientific Name(Taxon Id): Arabidopsis thaliana (3702) Common Name: thale cress
Other Info
- Abstract: Whole-genome sequencing was performed for 38 Arabidopsis thaliana accessions collected from eight populations across an elevation gradient in the western Himalayan region of India. The dataset was generated to investigate genetic diversity, population structure, demographic history, and adaptive evolution of Himalayan populations in comparison with global A. thaliana populations. High-quality paired-end sequencing reads were produced using the Illumina platform and aligned to the Arabidopsis thaliana TAIR10 reference genome for variant discovery and population genomic analyses. These data provide genomic resources for understanding the evolutionary history and environmental adaptation of A. thaliana populations from the Indian Himalayas.
- Linked publications:
- Center Name: Sumit Kumar Bag and Sribash Roy, CSIR-National Botanical Research Institute, Lucknow
- Number of Base(Total) Mbp: 398,416,919,618
- Size in bytes(Total): 257,454,636,233
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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