Study Info
INDA Accessions: INRP000570
INSDC Accessions: PRJEB107912, ERP188770
- Title: Rumen Anaerobes of Small Ruminants
- Data Type : Whole Genome Sequencing
- Descriptive Title: Anaerobic Culturing and Whole Genome Analysis of Rumen Microbes from Small Ruminants
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Organism:
Scientific Name(Taxon Id): Bacillus amyloliquefaciens (1390) Common Name:
Scientific Name(Taxon Id): Bacillus inaquosorum (483913) Common Name:
Scientific Name(Taxon Id): Bacillus licheniformis (1402) Common Name:
Scientific Name(Taxon Id): Bacillus paralicheniformis (1648923) Common Name:
Scientific Name(Taxon Id): Bacillus stercoris (2054641) Common Name:
Scientific Name(Taxon Id): Bacillus subtilis (1423) Common Name:
Scientific Name(Taxon Id): Bacillus velezensis (492670) Common Name:
Scientific Name(Taxon Id): Clostridium butyricum (1492) Common Name:
Scientific Name(Taxon Id): Lacrimispora celerecrescens (29354) Common Name:
Scientific Name(Taxon Id): Lacrimispora indolis (69825) Common Name:
Scientific Name(Taxon Id): Lacrimispora saccharolytica (84030) Common Name:
Scientific Name(Taxon Id): Lacrimispora xylanolytica (29375) Common Name:
Scientific Name(Taxon Id): Metagenome (256318) Common Name:
Scientific Name(Taxon Id): Paenibacillus macerans (44252) Common Name:
Scientific Name(Taxon Id): Priestia aryabhattai (412384) Common Name:
Scientific Name(Taxon Id): Priestia sp. (2800375) Common Name:
Scientific Name(Taxon Id): Proteiniphilum saccharofermentans (1642647) Common Name:
Scientific Name(Taxon Id): Proteiniphilum sp. (1926877) Common Name:
Other Info
- Abstract: The rumen of small ruminants contains a highly diverse anaerobic microbial community that plays an important role in fermenting plant based diets into essential metabolic end products required for the host nutrition and energy supply. Rumen digesta from small ruminants such as goats and sheep was collected and processed under strict anaerobic culture conditions. Methods adapted from standard rumen microbiology techniques including Hungate anaerobic culturing were used to enrich obligate anaerobes and other key functional microbial groups within the rumen ecosystem
- Linked publications:
- Center Name: Prof. C.G. Joshi, Dr. Madhvi Joshi, Dr. Ramesh Pandit, Tejas Shah, Rakesh Tiwari, Priyank Chavda, Dr. Paresh Pandya, Dr. Vaibhav Bhatt, Sonal Patil, Gujarat Biotechnology Research Centre, Gandhinagar
- Number of Base(Total) Mbp: 69,515,731,441
- Size in bytes(Total): 37,994,316,820
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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