Study Info
INDA Accessions: INRP000140
INSDC Accessions: PRJEB74492, ERP159180
- Title: GBS of RIL population A
- Data Type : Whole Genome Sequencing
- Descriptive Title: New and improved genome assembly for Safflower using PacBio HiFi reads, Optical Mapping and Hi-C
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Organism:
Scientific Name(Taxon Id): Carthamus tinctorius (4222) Common Name: Safflower
Other Info
- Abstract: New and improved genome assembly of Safflower was generated using sequencing approaches such as 1. PacBio HiFi reads 2. Optical Mapping and 3. Hi-C. PacBio HiFi reads are a part of long-read sequencing technology, which was used for contruction of contig-level primary assembly. Optical mapping was used for scaffolding whereas Hi-C was used for construction of chromosome level assembly. Illumina reads were used for the polishing the genome assembly. A final assembly of 1.09 Gb comprising 12 chromosomes was constructed using the above technologies. The improved assembly showed high BUSCO completeness of 97.9 percent. The high quality of the safflower genome was confirmed by high mapping back frequency of 99.3 percent and 94.37 percent the Pacbio and illumina reads respectively.
- Linked publications:
- Center Name: Department of Botany, University of Delhi
- Number of Base(Total) Mbp: 143,517,199,382
- Size in bytes(Total): 88,379,011,745
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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