Indian Crop Phenome Database
PST_100008
Printed on 25 Oct 2026
Indian Crop Phenome Database
| Project ID | PPJ_100007 |
| Title | Analysis of diversity in yield components (seed size and weight) at transcriptome and epigenome levels for association/genetic mapping of selected loci in rice and chickpea Component 1: Sub project II: Transcriptome and small RNA diversity analysis of developing seed in contrasting rice varieties |
| Type | Individual |
| Funding Agency | Department of Biotechnology (DBT), Ministry of Science & Technology, Govt. of India and Science and Engineering Research Board (SERB), Govt. of India |
| Grant Number | BT/AB/NIPGR/SEED BIOLOGY/2012, SB/WEA-02/2014, CRG/2018/000501 and SPG/2021/002899 |
| Release Date | 19 Apr 2023 |
| DOI / Publication | Cytological, transcriptome and miRNome temporal landscapes decode enhancement of rice grain size |
| Name | Pinky Agarwal |
| Designation | scientist |
| Organization | National Institute of Plant Genome Research (NIPGR), Delhi |
| Study ID | PST_100008 |
| Study Title | Grain development phenotypes from rice genotypes, SN and LGR (1000 grain weight, grain filling rate) |
| Description | -- |
| Crop | Oryza sativa |
| Meta-Trait | grain size |
| Data Type | Phenotypic |
| Location | New Delhi |
| Study Period | 01 Aug 2013 – 01 Sep 2013 |
| Growth Facility | Field |
| Experimental Design | Long-grained and short-grained indica rice, LGR [66], and Sonasal (SN), respectively, were grown in the kharif season in the field conditions at NIPGR, New Delhi, India. Freshly harvested seeds of 0, 1, 2, 3, 4, 7, 10, 13, 18, 21, and 29 DAP were collected in 30% ethanol. Images of husked and dehusked seeds of SN and LGR were captured at × 4 magnification under a stereozoom microscope (AZ100, Nikon; Japan). Grain length and width were quantified per seed by taking average of 100 seeds using WinSEEDLE™ software (Regent Instruments Inc.; Canada). One thousand-grain weight was measured in biological triplicates. Grain filling rate was estimated by measuring fresh weight of 15 seeds in triplicates from each DAP after removing stalks and awns. The measurements from each DAP constituting a stage were added to obtain the weight of 15 seeds/stage. |
| Tolerant Check | -- |
| Susceptible Check | -- |
| Uploaded By | Pinky Agarwal |
| Created | 06 Jun 2023 |
| Temperature Range | 32.000 – 36.000 °C |
| Light Intensity Range | 1500.000 – 2000.000 lux |
| Relative Humidity Range | 40.000 – 67.000 % |
| Other Conditions | -- |
| # | Name | Organization | Designation | |
|---|---|---|---|---|
| 1 | Antima Yadav | antimayadav35@gmail.com | -- | research_scholar |
| 2 | Aswathi PV | aswathipv4@gmail.com | -- | research_scholar |
| 3 | Arunima Mahto | arunimamahto@yahoo.com | -- | research_scholar |
| # | Trait Name | Developmental Stage | Tissue | Method |
|---|---|---|---|---|
| 1 | 1000-grain weight|TO_0000382 | dry seed stage|PO:0001040 | seed|PO:0009010 | 1000 grain (14%MC)weight measurement|1000 grain weight scale|Ordinal |
| 2 | Grain filling rate|Rice|CO_320:0001155 | S1 rice seed development|MCGS100297 | seed|PO:0009010 | Grain filling rate|| |
| 3 | Grain filling rate|Rice|CO_320:0001155 | S2 rice seed development|MCGS100298 | seed|PO:0009010 | Grain filling rate|| |
| 4 | Grain filling rate|Rice|CO_320:0001155 | S3 rice seed development|MCGS100299 | seed|PO:0009010 | Grain filling rate|| |
| 5 | Grain filling rate|Rice|CO_320:0001155 | S4 rice seed development|MCGS100300 | seed|PO:0009010 | Grain filling rate|| |
| 6 | Grain filling rate|Rice|CO_320:0001155 | S5 rice seed development|MCGS100301 | seed|PO:0009010 | Grain filling rate|| |
| # | File Accession | Genotypes | Accessions | File Size |
|---|---|---|---|---|
| 1 | PDT_100008 | 36 | 2 | 1.5 KB |